BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific
exonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
         (600 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040578|gb|ACT57374.1| single-stranded-DNA-specific exonuclease protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 600

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 600/600 (100%), Positives = 600/600 (100%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF
Sbjct: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS
Sbjct: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID
Sbjct: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS
Sbjct: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM
Sbjct: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT
Sbjct: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD
Sbjct: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID
Sbjct: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET
Sbjct: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK
Sbjct: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600


>gi|315122680|ref|YP_004063169.1| single-stranded-DNA-specific exonuclease protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496082|gb|ADR52681.1| single-stranded-DNA-specific exonuclease protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 596

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 489/596 (82%), Positives = 543/596 (91%), Gaps = 1/596 (0%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           MN QAFLGVE SISGFRW+SLLGQE INRALAITQKHAIPD+VARVLV R+VSID A++F
Sbjct: 1   MNYQAFLGVERSISGFRWLSLLGQEEINRALAITQKHAIPDLVARVLVGRHVSIDCAEEF 60

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           LNPSIR LMP+PL LTDCDKAARRIVQAIYNSEKI I GDYDVDGAASVALMMRF S+  
Sbjct: 61  LNPSIRSLMPNPLTLTDCDKAARRIVQAIYNSEKIAILGDYDVDGAASVALMMRFFSYYG 120

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           V++NMYIPDRI+DGYGPNP LM+K I+EGAQLIITVDCGSTS++ALQ+++NQGIDVIVID
Sbjct: 121 VDSNMYIPDRILDGYGPNPDLMKKIIDEGAQLIITVDCGSTSHEALQFSSNQGIDVIVID 180

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLL 239
           HHQ+K+EE PAYALVNPNR DDLSGQGHLCAAGVVFLVLV+I RIL+QDNK+P   FDLL
Sbjct: 181 HHQMKTEETPAYALVNPNRSDDLSGQGHLCAAGVVFLVLVMICRILQQDNKIPIKYFDLL 240

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           SLLDLVALATVCDVVPLI LNRAYV KGL+V+R+QGNPGLKALIER+N+S+PITA+NLG+
Sbjct: 241 SLLDLVALATVCDVVPLIDLNRAYVTKGLLVSRKQGNPGLKALIERINLSAPITADNLGF 300

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           MIGP INAGGRIGE+NLGSRLLISDD QELE +AMKLDVLNQNRRLMESAMLEQAE +VL
Sbjct: 301 MIGPCINAGGRIGEANLGSRLLISDDPQELEAIAMKLDVLNQNRRLMESAMLEQAEVEVL 360

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
            Q + +QQAS+IVV GD+WHPGIVGLLAARLKEKF RPSFAISF+E GKGIGSGRSIEGF
Sbjct: 361 AQYEHMQQASIIVVAGDQWHPGIVGLLAARLKEKFDRPSFAISFDESGKGIGSGRSIEGF 420

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           DIGKMVSFA EEGIL+KGGGHAMAAGLTVERVNF RL DFFQ FA+  + +L++ PV KI
Sbjct: 421 DIGKMVSFAFEEGILLKGGGHAMAAGLTVERVNFNRLRDFFQAFANKRMSSLVSMPVLKI 480

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG LNASAVNI LI+MLESAGPYG+GNP PVFAFP+HKL+++R+V L HLQMTF+SQDSE
Sbjct: 481 DGALNASAVNIKLIEMLESAGPYGSGNPRPVFAFPSHKLENVRIVKLNHLQMTFKSQDSE 540

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
            LQ IAFRVYGTPLGEFLMQS GK MHV GHLCVN+WRGSKR QLRVLDA+PVE H
Sbjct: 541 VLQGIAFRVYGTPLGEFLMQSHGKWMHVIGHLCVNHWRGSKRAQLRVLDAAPVENH 596


>gi|222085813|ref|YP_002544343.1| single-stranded-DNA-specific exonuclease protein [Agrobacterium
           radiobacter K84]
 gi|221723261|gb|ACM26417.1| single-stranded-DNA-specific exonuclease protein [Agrobacterium
           radiobacter K84]
          Length = 604

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 346/590 (58%), Positives = 440/590 (74%), Gaps = 1/590 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S+SG RWVS L Q G NRALA+ Q H +PD++ARVL  R V +D A  FL+P
Sbjct: 14  RAFLGVERSVSGNRWVSRLDQAGQNRALAMAQTHGLPDLIARVLAGRGVGVDEAMAFLDP 73

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP +LTDC+KAA R+++A+   E + IFGDYDVDGAAS AL+ RFL+H  V A
Sbjct: 74  TIRSLMPDPYLLTDCEKAAGRLLRAVKTGETVAIFGDYDVDGAASSALLYRFLTHFGVPA 133

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           ++YIPDRI +GYGPNP+ + + I+ GA LI+TVDCGSTS+++L+ A  + IDV+VIDHHQ
Sbjct: 134 SIYIPDRIFEGYGPNPAAINQLIDNGATLIVTVDCGSTSFESLEAAKARNIDVVVIDHHQ 193

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V  E    +ALVNPNR DDLSGQGHLCAAGVVFLVLV   R LR+   V     DLL+ L
Sbjct: 194 VAHELPHCHALVNPNREDDLSGQGHLCAAGVVFLVLVAALRQLREAGDVRVRTIDLLTWL 253

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR QGNPGL AL  +  +  P++  + G++IG
Sbjct: 254 DIVALATVCDVVPLKGLNRAYVVKGLIAARHQGNPGLAALFRKAGLGGPVSPYHFGFLIG 313

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LG+RLL   D+ E E++A KLD LN+ R+ ME+AML++AEA+ L + 
Sbjct: 314 PRINAGGRIGDAALGARLLTLADTSEAEIIAEKLDELNRERQAMEAAMLQEAEAEALAEY 373

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            +   ASVIV   + WHPGIVGL+A+RLK+KF RP+FAI+F+  GKG GSGRSI GFD+G
Sbjct: 374 GNGDGASVIVTARENWHPGIVGLIASRLKDKFRRPAFAIAFDPMGKGTGSGRSINGFDMG 433

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AV+ G+LVKGGGHAMAAGLTVER N G+L  FF + A   VP L+     KIDG 
Sbjct: 434 RMVRAAVDAGLLVKGGGHAMAAGLTVERGNLGKLRAFFTEKAERQVPGLVANETLKIDGA 493

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L AS   + LID LE+AGPYG+G+P P+FA P+H+L+  R+V  +H+++T E+QD   L 
Sbjct: 494 LGASGATVDLIDQLETAGPYGSGHPQPIFALPSHRLRDSRLVGQSHIKITLEAQDGGRLD 553

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAFR   TPLGE LM SRG ++HV G L  ++W+G++R QLRV DA+  
Sbjct: 554 GIAFRAAETPLGELLMSSRGSQVHVAGTLGADHWQGNRRVQLRVTDAAKA 603


>gi|240850783|ref|YP_002972183.1| single-stranded-DNA-specific exonuclease [Bartonella grahamii
           as4aup]
 gi|240267906|gb|ACS51494.1| single-stranded-DNA-specific exonuclease [Bartonella grahamii
           as4aup]
          Length = 594

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 285/590 (48%), Positives = 387/590 (65%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            + FL VE S  G  W+  L  +GIN A AI+QK   PD +ARVL  R+V    A  F+N
Sbjct: 4   SRYFLNVESSACGQAWLDALDVQGINNARAISQKFGFPDQLARVLSARDVDEAEAVAFIN 63

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R LMPDP    D   AA RIV+A+ N E++ +FGDYDVDGA S AL+ RF  +  + 
Sbjct: 64  PTLRTLMPDPESFRDMQCAAERIVKALLNQEQVAVFGDYDVDGACSSALIARFFRYFGIE 123

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             +YIPDRI++GYGPN   M   + EGA+LIITVDCG+ S DA++ A   G DV+++DHH
Sbjct: 124 VKIYIPDRIIEGYGPNEQAMRMLVQEGARLIITVDCGANSPDAVKAARLAGADVVILDHH 183

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
           Q+      A ALVNPNR DD S QGHLCAAGVVF+ L  ++ +LR+        DLLS+L
Sbjct: 184 QMSEIHQEAIALVNPNRPDDFSKQGHLCAAGVVFVTLAWVHHLLRKKQFQGQLPDLLSML 243

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALAT+CDVVPL G+NRA+V+KGL VAR   NPG+ AL +   I  P+ + + G+++G
Sbjct: 244 DLVALATICDVVPLQGVNRAFVIKGLQVARSMHNPGITALTKVARIGEPLNSFHFGFLLG 303

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG+  LG+RLL  ++  E + +A +LD LNQ R+ ME+  L QAE+ + +  
Sbjct: 304 PRINAGGRIGDQALGARLLSCENKDEADRIAEQLDRLNQERQEMENIQLAQAESYIASLY 363

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D +    +V+    WHPGI+G+LA+RLKE+F  P FAI+ +EDG G+GSGRSI G D+G
Sbjct: 364 QDQEIPLSLVISHKEWHPGIIGILASRLKERFFCPVFAIALKEDGNGVGSGRSINGIDLG 423

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            +V  AV   +L KGGGH+MAAG+T++         + ++     V  L       IDG 
Sbjct: 424 ALVREAVTLNLLEKGGGHSMAAGITIQSTKIEIFRKWLEEKVSLRVSELHAKKSLSIDGS 483

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L+AS VN AL ++LE AGP+G GN  PVF  P+H+L ++  V   HL++   + + + LQ
Sbjct: 484 LSASGVNEALFELLEKAGPFGTGNATPVFVLPSHRLVNLSEVGKGHLRLIVSNVEGKKLQ 543

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAFR  GT LG+FL ++ G+ +H+ GHL +NYW G+   QLRV+DA+ V
Sbjct: 544 GIAFRAVGTSLGDFLFENIGEMIHLAGHLSLNYWNGTTNPQLRVIDAAAV 593


>gi|121601735|ref|YP_989185.1| single-stranded-DNA-specific exonuclease RecJ [Bartonella
           bacilliformis KC583]
 gi|120613912|gb|ABM44513.1| single-stranded-DNA-specific exonuclease RecJ [Bartonella
           bacilliformis KC583]
          Length = 594

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 291/587 (49%), Positives = 388/587 (66%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66
           L V+ S  G  WV  L  +GIN+A AI+QK  +PD +ARVL  R+V       F+NP++R
Sbjct: 8   LDVKSSACGQAWVDSLDIQGINKARAISQKFGLPDQLARVLSARDVDESEVISFINPALR 67

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            LMP+P   TD   AA R+V+AI N E + IFGDYDVDGA S AL+ RF  +  +    Y
Sbjct: 68  TLMPNPEHFTDMQCAAERLVKAIMNQENVAIFGDYDVDGACSSALLARFFRYFGIETKTY 127

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDRIV+GYGPN   M+  + EGA LIITVDCG+ S +A++ A   G DV+V+DHHQ+  
Sbjct: 128 IPDRIVEGYGPNAQAMKALVQEGASLIITVDCGANSPEAIKVARLLGADVVVLDHHQMGD 187

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A ALVNPNR DD S QGHLCAAGVVF+ L  +  +LR+        DLL++LDLVA
Sbjct: 188 LHQEAVALVNPNRPDDFSEQGHLCAAGVVFITLAWVNHLLREKKWEGDIPDLLAMLDLVA 247

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           LAT+CDVVPL G+NRA+VVKGL VAR   NPG+ AL +   I  P+ + +LG+++GP IN
Sbjct: 248 LATICDVVPLKGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGFLLGPRIN 307

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGRIG+  LG+RLL  D+  E + +A +LD LNQ R+ MES  L QAEA + +   D +
Sbjct: 308 AGGRIGDQALGARLLSCDNRDEADRIAKQLDQLNQERQEMESVQLAQAEAYIHSIYQDEE 367

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
               IVV    WHPGIVG+LA+RLKE+F  P FAI+ + DGKGIGSGRSI+G D+G++V 
Sbjct: 368 MPLSIVVAHQEWHPGIVGILASRLKERFFCPVFAIALKADGKGIGSGRSIDGIDLGELVR 427

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            AV   +L KGGGH+MAAGLT++        ++ ++    +V  L       IDG ++AS
Sbjct: 428 EAVSLNLLEKGGGHSMAAGLTIQSTKINAFQEWLKEKVSLMVSQLRAEQCLNIDGFISAS 487

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
             N  L DM+E AGP+G+GN  PVF  P+H+L ++  V   HL++T    + + LQ IAF
Sbjct: 488 GANKDLFDMIEKAGPFGSGNATPVFVLPSHRLVNLHEVGKGHLRLTVSDIEGKKLQGIAF 547

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           R   T LG+FL+++  K +H+ G+L +NYW G+   QLRV+DA+ V+
Sbjct: 548 RAVETSLGDFLVKNIDKTIHLAGNLSLNYWNGTITPQLRVIDAAAVD 594


>gi|241204470|ref|YP_002975566.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858360|gb|ACS56027.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 600

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 341/591 (57%), Positives = 436/591 (73%), Gaps = 1/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S    RWV+ L Q G NRALA++Q H +PD++ARVL  R V++D A +FL+P
Sbjct: 10  RAFLGVEKSALDNRWVARLDQAGQNRALAMSQIHGLPDLIARVLAGRGVTVDEAIEFLDP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP  LTDC+KAA R+++AI   E + IFGDYDVDGAAS ALM RFLSH  V A
Sbjct: 70  TIRSLMPDPHKLTDCEKAANRLLRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGVRA 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDR+ +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL  A  + IDV+VIDHHQ
Sbjct: 130 TIYIPDRVFEGYGPNPAAINQLIDNGAELIVTVDCGSTSHEALAAAAARNIDVVVIDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V  E  P +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  L
Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILAIDLLQWL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++IG
Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E +++A +LD LN+ R+ ME+ ML++AEA+ L + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEADVIAQRLDELNRERQAMEAIMLQEAEAEALAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D + ASVIV   ++WHPGIVGL+AARLKEKF RP+FAI+F+  G+G GSGRSI GFD+G
Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AV+EG+LVKGGGHAMAAGLTVER + GRL  FF + A   V +L+     KIDG 
Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERTDLGRLRTFFTEKAERTVASLVANETLKIDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + LID LE+AGPYG+G+  P+FA P H+L+  R+V   H+++T E+ D   L 
Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAIPAHRLRDARLVGEKHVKVTLEAMDGSRLD 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            IAFR   TPLG  L+ SRG  +HV G L  ++++G++R QLRV DA+P +
Sbjct: 550 GIAFRAADTPLGNLLINSRGANLHVAGSLGADHYQGARRIQLRVCDAAPAK 600


>gi|163868609|ref|YP_001609818.1| single-stranded-DNA-specific exonuclease [Bartonella tribocorum CIP
           105476]
 gi|161018265|emb|CAK01823.1| single-stranded-DNA-specific exonuclease [Bartonella tribocorum CIP
           105476]
          Length = 594

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 283/590 (47%), Positives = 387/590 (65%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            + FL VE S  G  W+  L  +GIN A AI+QK   PD +ARVL  R V    A  F++
Sbjct: 4   SRYFLNVESSACGQAWLDALDVQGINNARAISQKFGFPDQLARVLSARGVDETEAVAFID 63

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R+LMPDP    D   AA RIV+A+ N E++ +FGDYDVDGA + AL+ RF  +  + 
Sbjct: 64  PTLRMLMPDPESFRDMQCAAERIVKALLNQEQVAVFGDYDVDGACASALIARFFRYFGIE 123

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             +YIPDRIV+GYGPN   M   + EGA+LIITVDCG+ S DA++ A   G DV+++DHH
Sbjct: 124 VKIYIPDRIVEGYGPNEQAMRMLVQEGARLIITVDCGANSPDAVKAARLAGADVVILDHH 183

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
           Q+      A ALVNPNR DD S QG+LCAAGVVF+ L  ++ +LR+        DLLS+L
Sbjct: 184 QMSEIHQEAIALVNPNRPDDFSEQGYLCAAGVVFVTLAWVHHLLRKKQFEGPLPDLLSML 243

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALAT+CDVVPL G+NRA+VVKGL VAR   N G+ AL +   I  P+ + +LG+++G
Sbjct: 244 DLVALATICDVVPLQGVNRAFVVKGLHVARSMHNLGIAALTKVARIGEPLNSFHLGFLLG 303

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG+  LG+RLL  ++  E + +A +LD LNQ R+ ME   L QAE+ + +  
Sbjct: 304 PRINAGGRIGDQALGARLLSCENKDEADRIAEQLDQLNQERQEMEKIQLAQAESYIASLY 363

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D +    +V+    WHPGI+G+LA+RLKE+F  P FAI+ +EDG G+GSGRSI G D+G
Sbjct: 364 QDQEPPLSLVISHQEWHPGIIGILASRLKERFFCPVFAIALKEDGNGVGSGRSIHGIDLG 423

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            +V  AV   +L KGGGH+MAAG+T++         + ++    +V  L      +IDG 
Sbjct: 424 ALVREAVTLNLLEKGGGHSMAAGITIQSTKIEFFRKWLEEKVSVMVSQLHAKKSLRIDGS 483

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L+AS  N AL ++LE AGP+G GN  PVF  P+H+L ++  V   HL++   + + + LQ
Sbjct: 484 LSASGANQALFELLEKAGPFGTGNATPVFVLPSHRLMNLSEVGKGHLRLIISNGEGKKLQ 543

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAFR  GT LG+FL ++ G+ +H+ GHL +NYW G+   QLRV+DA+ V
Sbjct: 544 GIAFRAVGTALGDFLSRNIGEMIHLAGHLSLNYWNGTINPQLRVIDAAAV 593


>gi|319898876|ref|YP_004158969.1| single-stranded-DNA-specific exonuclease [Bartonella clarridgeiae
           73]
 gi|319402840|emb|CBI76391.1| single-stranded-DNA-specific exonuclease [Bartonella clarridgeiae
           73]
          Length = 594

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 291/585 (49%), Positives = 387/585 (66%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
            L VE S  G  WV  L  E +N A AI+QK  +PD +ARVL  R+V    A  F+NP++
Sbjct: 7   LLNVESSAWGQAWVDALDIERVNNARAISQKFGLPDQLARVLAARDVDESEAITFINPTL 66

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           R+LMP+P    D   AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL +  +   +
Sbjct: 67  RVLMPNPKDFIDMHCAAERLVKAIINREKIAVFGDYDVDGACSAALLARFLHYFGIIVKI 126

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           YIPDRI++GYGPN   M+  + EGA LIITVDCG+ S DAL+ A   G DVIV+DHHQ++
Sbjct: 127 YIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPDALRAAKFAGADVIVLDHHQME 186

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
           +    A ALVNPNR DDLS QGHLCAAGVVF+ L+ + R+LR+        DLLS+LDLV
Sbjct: 187 NVHEEAVALVNPNRPDDLSEQGHLCAAGVVFITLIWVNRLLREKKWGGALPDLLSMLDLV 246

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
           ALAT+CD+VPL G+NRA+VVKGL VAR   NPG+ AL +  +I  P+ + +LG+++GP I
Sbjct: 247 ALATICDIVPLKGVNRAFVVKGLQVARSMRNPGIAALAKVAHIGEPLNSFHLGFLLGPRI 306

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NAGGRIG   LG+ LL  +D  E + +A +LD LN+ R+ ME   L QAE  + +   D 
Sbjct: 307 NAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEMIQLAQAEVYIDSIYQDE 366

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
              S  V+    WHPGI+G+LAARLKE+F  P  AI+ +EDG GIGSGRSI G D+G +V
Sbjct: 367 AMPSSFVIAHKEWHPGIIGILAARLKERFFCPVLAIALKEDGSGIGSGRSISGIDLGALV 426

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             AV   +L KGGGH+MAAG T++        ++ ++    +V  L       IDG L+A
Sbjct: 427 HEAVTLNLLEKGGGHSMAAGFTIQSTKIEAFREWLEEKVSLMVSQLRAEKSLSIDGFLSA 486

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
           S  N  L DM+E AGP+G+GN  PVF FP+H+L ++  V   HL++     + + L+ IA
Sbjct: 487 SGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISDIEGKKLKGIA 546

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           F   GT LG+FL ++ GK++H+ G+L +N+WRGS   QLRV+DA+
Sbjct: 547 FGAVGTSLGKFLSKNIGKKIHLAGNLSLNHWRGSISPQLRVIDAA 591


>gi|319408572|emb|CBI82225.1| single-stranded-DNA-specific exonuclease [Bartonella
           schoenbuchensis R1]
          Length = 593

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 291/586 (49%), Positives = 382/586 (65%), Gaps = 1/586 (0%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66
           L V+ S     WV  L  +GIN A AI+QK   PD +ARVL  RNV    A  F+NP++R
Sbjct: 8   LNVKSSACDQAWVDPLDIQGINNARAISQKFGFPDQLARVLAARNVDESEAVSFINPTLR 67

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+P+P   TD   AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL +  +   +Y
Sbjct: 68  NLLPNPESFTDMQCAAERLVKAIMNREKIAVFGDYDVDGACSSALLARFLRYFGITVKIY 127

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDRIV+GYGPN   M+    EGA LIITVDCG+ S DA++ A   G DV+V+DHHQ+  
Sbjct: 128 IPDRIVEGYGPNEQAMKMLAQEGASLIITVDCGANSPDAIKAARFAGADVVVLDHHQMSD 187

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A ALVNPNR DD S QGHLCAAG+VF+ LV +  +LR+        DLLS+LDLVA
Sbjct: 188 VHQEAVALVNPNRPDDFSEQGHLCAAGIVFVTLVWVNHLLRKQKWTETVPDLLSMLDLVA 247

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           LATVCDVVPL G+NRA+VVKGL VAR   N G+ AL +   I  PI + +LG+++GP IN
Sbjct: 248 LATVCDVVPLRGVNRAFVVKGLQVARSMHNAGIAALAKVARIGEPINSFHLGFLLGPRIN 307

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGRIG+  LG+RLL  D+  E + +A +L+ LNQ R+ ME+  L QAEA + +   D +
Sbjct: 308 AGGRIGDQALGARLLSCDNRDEADKMAEQLNKLNQERQEMEAIQLAQAEAYIDSVHHDKE 367

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S+ VV    WHPGIVG+LA+RLKE+F  P F I+ + DG G GSGRSI G D+G +V 
Sbjct: 368 MSSL-VVACQEWHPGIVGILASRLKERFFCPVFVIALKADGSGTGSGRSISGVDLGALVH 426

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            AV   +L KGGGH+MAAG+T++        ++ ++    +V  L       IDG L+AS
Sbjct: 427 EAVTLNLLEKGGGHSMAAGITIQSTKVEAFREWLEEKVSLVVSQLRAKKSLSIDGFLSAS 486

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
             N  L DM+E AGP+G+ N  PVF  P+H+L S+  V   HL++     + + LQ IAF
Sbjct: 487 GANKDLFDMIEKAGPFGSENATPVFVLPSHRLVSVCEVGKGHLRLFVSDLEGKKLQGIAF 546

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              GT LG FL ++ G+ +HV G+L +NYW G+ + QLRV+DA+ V
Sbjct: 547 HAVGTSLGNFLSENVGETIHVAGNLSLNYWNGTIKPQLRVIDAATV 592


>gi|319407211|emb|CBI80850.1| single-stranded-DNA-specific exonuclease [Bartonella sp. 1-1C]
          Length = 594

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 289/589 (49%), Positives = 387/589 (65%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +  L ++ S     W+  L  +  N A AI+QK  +P+ +ARVL  RNV    A  F+NP
Sbjct: 5   RYLLNIQSSACNQVWIDALDIDRTNNARAISQKFGLPEQLARVLAARNVDESEAMVFINP 64

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R+LMP+P   TD D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL    +  
Sbjct: 65  TLRVLMPNPKKFTDMDCAAERLVKAIINQEKIAVFGDYDVDGACSAALLARFLHCFGIIV 124

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI++GYGPN   M+  + EGA LIITVDCG+ S +A++ A   G DVIV+DHHQ
Sbjct: 125 KIYIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPNAIRAARLAGADVIVLDHHQ 184

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           +++    A ALVNPNR DD S QGHLCAAGVVF+ L+ + R+LR+        DLLS+LD
Sbjct: 185 MENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLREKKWKGALPDLLSMLD 244

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALAT+CDVVPL G+NRA+VVKGL VAR   NPG+ AL +   I  P+ + +LG+++GP
Sbjct: 245 LVALATICDVVPLQGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGFLLGP 304

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG   LG+ LL  +D  E + +A +LD LN+ R+ ME + L QAEA + +   
Sbjct: 305 RINAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEISQLAQAEAYIDSIYQ 364

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           +    S  V+    WHPGI+G+LAARLKE+F  P   I+ +EDG GIGSGRSI G D+G 
Sbjct: 365 ERTIPSSFVIAHKGWHPGIIGILAARLKERFFCPVLIIALKEDGSGIGSGRSISGIDLGA 424

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  AV   +L KGGGH+MAAG T++        ++ ++    IV  L       IDG L
Sbjct: 425 LVHEAVTLNLLEKGGGHSMAAGFTIQSDKIEAFREWLEEKISLIVSQLRAEKSLSIDGFL 484

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +AS  N  L DM+E AGP+G+GN  PVF FP+H+L ++  V   HL++   + + E LQ 
Sbjct: 485 SASGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISNIEGEKLQG 544

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF   GT LG+FL ++ GK +H+ G+L +N+WRGS   QLRV+DA+ V
Sbjct: 545 IAFGAVGTTLGKFLSENIGKTIHLAGNLSLNHWRGSISPQLRVIDAAAV 593


>gi|86357505|ref|YP_469397.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           CFN 42]
 gi|86281607|gb|ABC90670.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           CFN 42]
          Length = 600

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 343/593 (57%), Positives = 433/593 (73%), Gaps = 1/593 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
             +AFLGVE S    RWV+ L Q G NRALA+ Q H +PD++ARVL  R V +D A +FL
Sbjct: 8   VPRAFLGVEKSALDNRWVARLDQAGQNRALAMAQVHGLPDLIARVLAGRGVRVDEAIEFL 67

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+IR LMPDP  LTDC+KAA R+V+AI   E + IFGDYDVDGAAS ALM RFLSH  V
Sbjct: 68  DPTIRSLMPDPHTLTDCEKAATRLVRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGV 127

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
            AN+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL  A  + IDV+VIDH
Sbjct: 128 KANIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDH 187

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLS 240
           HQV  E  P +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR      +   DLL 
Sbjct: 188 HQVTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRIMALDLLQ 247

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LD+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++
Sbjct: 248 WLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFL 307

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LGSRLL  DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L 
Sbjct: 308 IGPRINAGGRIGDAALGSRLLTLDDAGEAEVIAQRLDELNRERQAMEAMMLQEAEAEALA 367

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +  D + AS+IV   ++WHPGIVGL+AARLKEKF RP+FAI+F+  G+G GSGRSI GFD
Sbjct: 368 EYGDGEGASIIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFD 427

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G+MV  AVEEGILVKGGGHAMAAGLTVER + GRL  FF + A   V +L+     KID
Sbjct: 428 MGRMVRAAVEEGILVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVASLVANETLKID 487

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G + AS   + LID LE+AGPYG+G+  P+FA P H+++  R+V   H+++T E+ D   
Sbjct: 488 GAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSR 547

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           L  IAFR   T LG  L+ SRG  +HV G L   +++G++R QLRV DA+P +
Sbjct: 548 LDGIAFRAADTGLGNLLINSRGASLHVAGSLGAEHYQGARRIQLRVCDAAPAK 600


>gi|319404201|emb|CBI77794.1| single-stranded-DNA-specific exonuclease [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 594

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 289/589 (49%), Positives = 386/589 (65%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +  L ++ S     W+  L  +  N A AI+QK  +PD +ARVL  RNV    A  F+NP
Sbjct: 5   RYLLNIQSSACNQAWIDALDMDRTNNARAISQKFGLPDQLARVLAARNVDESEAVVFINP 64

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R LMP+P   TD D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL    +  
Sbjct: 65  TLRALMPNPKKFTDMDCAAERLVRAIINQEKITVFGDYDVDGACSAALLARFLHCFGIIV 124

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI++GYGPN   M+  + EGA LIITVDCG+ S +A++ A   G DVIV+DHHQ
Sbjct: 125 KIYIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPNAIRAARLAGADVIVLDHHQ 184

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           +++    A ALVNPNR DD S QGHLCAAGVVF+ L+ + R+LR+        DLLS+LD
Sbjct: 185 MENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLREKKWKGALPDLLSMLD 244

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALAT+CDVVPL G+NRA+VVKGL VAR   NPG+ AL +   I  P+ + +LG+++GP
Sbjct: 245 LVALATICDVVPLQGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGFLLGP 304

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG   LG+ LL  +D  E + +A +LD LN+ R+ ME + L QAEA + +   
Sbjct: 305 RINAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEISQLAQAEAYIDSIYQ 364

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           +    S  V+    WHPGI+G+LAARLKE+F  P   I+ +EDG GIGSGRSI G D+G 
Sbjct: 365 ERTIPSSFVIAHKGWHPGIIGILAARLKERFFCPVLIIALKEDGSGIGSGRSISGIDLGA 424

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  AV   +L KGGGH+MAAG T++        ++ ++    IV  L       IDG L
Sbjct: 425 LVHEAVALNLLEKGGGHSMAAGFTIQSDKIEAFREWLEEKISLIVSQLRAEKSLNIDGFL 484

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +AS  N  L DM+E AGP+G+GN  PVF FP+H+L ++  V   HL++   + + E LQ 
Sbjct: 485 SASGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISNIEGEKLQG 544

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF   GT LG+FL ++ GK +H+ G+L +N+WRG+   QLRV+DA+ V
Sbjct: 545 IAFGAVGTALGKFLSENIGKTIHLAGNLSLNHWRGNISPQLRVIDAAAV 593


>gi|49475553|ref|YP_033594.1| single-stranded-DNA-specific exonuclease [Bartonella henselae str.
           Houston-1]
 gi|49238359|emb|CAF27583.1| Single-stranded-DNA-specific exonuclease [Bartonella henselae str.
           Houston-1]
          Length = 594

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 292/590 (49%), Positives = 387/590 (65%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            + FL V+ S  G  W+  L  +GIN A AI+QK   PD +ARVL  R+V    A  F+N
Sbjct: 4   SRYFLNVQSSACGQAWLDALDIQGINNARAISQKFGFPDQLARVLSARDVDESEAVAFIN 63

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R LMPDP   TD   AA RIV+AI   EK+ +FGDYDVDGA S AL+ RFL +  V 
Sbjct: 64  PTLRTLMPDPKSFTDMQYAAERIVKAILKQEKVAVFGDYDVDGACSSALIARFLRYFGVE 123

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             +YIPDRIV+GYGPN   M   + +GA LIITVDCG+ S DA++ A   G DV+V+DHH
Sbjct: 124 VKIYIPDRIVEGYGPNEQAMRMLVQQGAHLIITVDCGANSPDAVKAARLAGADVVVLDHH 183

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
           Q+      A ALVNPNR DD SGQGHLCAAGVVF+ L  ++ +LR+   V    DLLS+L
Sbjct: 184 QMSEVHQEAVALVNPNRPDDFSGQGHLCAAGVVFVTLAWVHHLLRKKKFVEELPDLLSML 243

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALAT+CDVVPL G+NRA+VVKGL VA    NPG+ AL +   I  P+ + +LG+++G
Sbjct: 244 DLVALATICDVVPLQGVNRAFVVKGLQVAHSMHNPGIAALTKVARIGEPLNSFHLGFLLG 303

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG+  LG+RLL  +D  E + +A +L+ LNQ R+ ME+  L QAE+ + +  
Sbjct: 304 PRINAGGRIGDQALGARLLSCEDKGEADRIAEQLNQLNQERQEMEAIQLAQAESYIDSLY 363

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D ++   +V+    WHPGI+GLLA+RLKE+F  P FAI+ +E+G GIGSGRSI G D+G
Sbjct: 364 QDREKPLSLVIAHQEWHPGIIGLLASRLKERFFCPVFAIALKENGSGIGSGRSISGIDLG 423

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            +V  AV   +L KGGGH+MAAG+T++         + ++     V  L       IDG 
Sbjct: 424 ALVREAVTLNLLEKGGGHSMAAGITIQSTKIEIFRKWLEERVSLNVSQLHAEKSLNIDGC 483

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L+AS  N AL DM+E AGP+G+GN  PVF  P+H+L ++  V   HL+    + + + LQ
Sbjct: 484 LSASGANKALFDMIEKAGPFGSGNTTPVFVLPSHRLMNLCEVGKGHLRFIMSNMEGKKLQ 543

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAFR  GT LG FL  + G+ +HV G++ +NYW G+   QLRV+DA+ V
Sbjct: 544 GIAFRAVGTSLGYFLSGNVGEMIHVAGNISLNYWNGNISPQLRVIDAAAV 593


>gi|190891568|ref|YP_001978110.1| single-stranded-DNA-specific exonuclease [Rhizobium etli CIAT 652]
 gi|190696847|gb|ACE90932.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           CIAT 652]
          Length = 600

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 342/591 (57%), Positives = 433/591 (73%), Gaps = 1/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S    RWV+ L Q G NRALA++Q H +PD++ARVL  R V +D A +FL+P
Sbjct: 10  RAFLGVEKSALDNRWVARLDQAGQNRALAMSQVHGLPDLIARVLAGRGVPVDEAIEFLDP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP  LTDC+KAA R+V AI   E + IFGDYDVDGAAS ALM RFLSH  V A
Sbjct: 70  TIRSLMPDPHTLTDCEKAATRLVSAIERGENVAIFGDYDVDGAASSALMFRFLSHFGVKA 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           N+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL  A  + IDV+VIDHHQ
Sbjct: 130 NIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V  E  P +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  L
Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILALDLLQWL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++IG
Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEAELIAQRLDELNRERQAMEAMMLQEAEAEALAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D + ASVIV   ++WHPGIVGL+AARLKEKF RP+FAI+F+  G+G GSGRSI GFD+G
Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AV+EG+LVKGGGHAMAAGLTVER + GRL  FF + A   V  L+     KIDG 
Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLVANETLKIDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + LID LE+AGPYG+G+  P+FA P H+++  R+V   H+++T E+ D   L 
Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLD 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            IAFR   T LG  L+ SRG  +HV G L  ++++G++R Q+RV DA+P +
Sbjct: 550 GIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQMRVCDAAPAK 600


>gi|327190809|gb|EGE57877.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           CNPAF512]
          Length = 600

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 341/591 (57%), Positives = 433/591 (73%), Gaps = 1/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S    RWV+ L Q G NRALA++Q + +PD++ARVL  R V +D A +FL+P
Sbjct: 10  RAFLGVEKSALDNRWVARLDQAGQNRALAMSQVYGLPDLIARVLAGRGVPVDEAIEFLDP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP  LTDC+KAA R++ AI   E + IFGDYDVDGAAS ALM RFLSH  V A
Sbjct: 70  TIRSLMPDPHTLTDCEKAATRLMSAIERGENVAIFGDYDVDGAASSALMFRFLSHFGVKA 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           N+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL  A  + IDV+VIDHHQ
Sbjct: 130 NIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALASAAARNIDVVVIDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V  E  P +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  L
Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILALDLLQWL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++IG
Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEAEIIAQRLDELNRERQAMEAVMLQEAEAEALAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D + ASVIV   ++WHPGIVGLLAARLKEKF RP+FAI+F+  G+G GSGRSI GFD+G
Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLLAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AV+EG+LVKGGGHAMAAGLTVER + GRL  FF + A   V  L+     KIDG 
Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLVANETLKIDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + LID LE+AGPYG+G+  P+FA P H+++  R+V   H+++T E+ D   L 
Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGTRLD 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            IAFR   T LG  L+ SRG  +HV G L  ++++G++R Q+RV DA+P +
Sbjct: 550 GIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQMRVCDAAPAK 600


>gi|154253388|ref|YP_001414212.1| single-stranded-DNA-specific exonuclease RecJ [Parvibaculum
           lavamentivorans DS-1]
 gi|154157338|gb|ABS64555.1| single-stranded-DNA-specific exonuclease RecJ [Parvibaculum
           lavamentivorans DS-1]
          Length = 603

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 264/595 (44%), Positives = 370/595 (62%), Gaps = 7/595 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            +AFLGVE S +G  W+S L       ALAI Q+  +P+IVARVL  R V+ +    +L 
Sbjct: 6   TRAFLGVERSATGRAWLSRL--ADDRLALAIAQREGLPEIVARVLAGRGVAPEDCAAYLA 63

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           PS++ LMPDP ++TD +KAA R+ QAI   EKI +FGDYDVDGA S AL+ RF       
Sbjct: 64  PSLKTLMPDPRVVTDMEKAATRVAQAIMAGEKIAVFGDYDVDGATSSALLQRFFRAAGSE 123

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             +YIPDRI +GYGPN   + +  +EG  L+ITVDCG+ ++ AL  A + G+  IV+DHH
Sbjct: 124 LRIYIPDRIREGYGPNAPALLRLKDEGIDLVITVDCGTMAHKALGLAADAGLPSIVVDHH 183

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240
           Q +    PAYALVNPNRLDD SG G L A GV FL +V   R LR+          DL+ 
Sbjct: 184 QAEPALPPAYALVNPNRLDDESGLGQLAAVGVAFLFVVATNRALREAGWYATRPEPDLMQ 243

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LDLVAL T+CDVVPL+GLNRA+V +GL V  R+ N GL AL +   ++      + G++
Sbjct: 244 WLDLVALGTICDVVPLLGLNRAFVAQGLRVMARRQNIGLAALGDVARLNGAPVPYHCGFL 303

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP +NAGGR+G+++LG+RLL ++D +E   +A +L+V+N  R+ +E+ +LE+A  +V  
Sbjct: 304 LGPRVNAGGRVGKADLGARLLTTEDVEEARAIAEELNVMNGERQAIEAQVLEEALTQVDE 363

Query: 361 QC---DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
           +           +I+  G  WHPG++G++A+RLK+K+ RPS  ++F+  G+G GSGRS+ 
Sbjct: 364 RLSAARANTLPPIIIASGHGWHPGVIGIVASRLKDKYERPSLVLAFDGKGEGKGSGRSLT 423

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
           G D+G+ V+ A+E G+LV GGGHAMAAGLT+   N   L  F  K   + V A       
Sbjct: 424 GVDLGRAVTAALEAGLLVNGGGHAMAAGLTLREDNLEALEAFLAKRLADDVSAASEARAL 483

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
           K+DG L+A      L ++L+ AGPYGAGN  P FA P+ ++    +V   H+++    +D
Sbjct: 484 KLDGALSARGATRELYELLQQAGPYGAGNAEPRFAVPSVRVVKADIVGKDHVRVILSGED 543

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              ++AIAFR   TPLG  LM      +HV G L  + W+G +  QL + DA P 
Sbjct: 544 GGRIKAIAFRAATTPLGAVLMDKGSGLLHVAGRLSADDWQGRRAVQLTIEDAVPT 598


>gi|319405639|emb|CBI79262.1| single-stranded-DNA-specific exonuclease [Bartonella sp. AR 15-3]
          Length = 594

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 291/589 (49%), Positives = 388/589 (65%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +  L V+ S     WV  L  + IN A AI+QK  +PD +ARVL  R+V    A  F+NP
Sbjct: 5   RYLLNVQSSACDQAWVDALDMDRINNARAISQKFGLPDQLARVLAARDVDEAEAVAFINP 64

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R+LMPDP  +TD D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL    +  
Sbjct: 65  TLRILMPDPKKITDVDCAAERLVKAIINQEKIAVFGDYDVDGACSAALLARFLHCFGIIV 124

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI++GYGPN   M   + EGA LIITVDCG+ S DA++ A   G DVIV+DHHQ
Sbjct: 125 KIYIPDRIIEGYGPNEQAMRGLVQEGASLIITVDCGANSPDAIRAARLAGADVIVLDHHQ 184

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           +++    A ALVNPNR DD S QGHLCAAGVVF+ L+ + R+LR+        DLLS+LD
Sbjct: 185 MENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLRKKKWGGALPDLLSMLD 244

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALAT+CDVVPL G+NRA+V KGL VAR   NPG+ AL +  +I  P+ + +LG+++GP
Sbjct: 245 LVALATICDVVPLQGVNRAFVNKGLQVARSMYNPGIAALAKVAHIGEPLNSFHLGFLLGP 304

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG   LG+ LL  +D  E + +A +LD LN+ R+ ME   L QAE+ + +   
Sbjct: 305 RINAGGRIGNQALGAYLLSCNDRDEADRIAQELDRLNKERQEMEMIQLAQAESYLDSIYQ 364

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           +    S  V+    WHPGI+G+LAARLKE+F  P   I+ +EDG GIGSGRSI G ++G 
Sbjct: 365 EKTIPSPFVIAHKEWHPGIIGILAARLKERFFCPVLVIALKEDGSGIGSGRSISGINLGA 424

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  AV   +L KGGGH+MAAG T++        ++ ++    +V  L       IDG L
Sbjct: 425 LVREAVTLNLLEKGGGHSMAAGFTIQSTKIEAFREWLEEKVSLMVSQLRAKKSLSIDGFL 484

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +AS  N  L DM+E AGP+G+GN  PVFAFP+H+L  +  V   HL++   + + E LQ 
Sbjct: 485 SASGANKDLFDMIEKAGPFGSGNAIPVFAFPSHRLVKLYEVGKGHLRLIISNIEGEKLQG 544

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF   GTPLG+FL ++ GK +H+ G+L +N+WRG+   QLRV+DA+ V
Sbjct: 545 IAFGAVGTPLGQFLFENIGKTIHLAGNLSLNHWRGNISPQLRVIDAAAV 593


>gi|49474261|ref|YP_032303.1| single-stranded-DNA-specific exonuclease [Bartonella quintana str.
           Toulouse]
 gi|49239765|emb|CAF26152.1| Single-stranded-DNA-specific exonuclease [Bartonella quintana str.
           Toulouse]
          Length = 594

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 291/587 (49%), Positives = 389/587 (66%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           FL V+ S  G  W+  L  +GIN A AI+QK   PD +ARVL  R+V    A  F+NP++
Sbjct: 7   FLNVQSSACGQAWLDALDLKGINNARAISQKFGFPDALARVLSARDVDESEAVAFINPTL 66

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           R LMPDP    D   AA RIV+AI N EK+ +FGDYDVDGA S AL+ RFL +  +   +
Sbjct: 67  RTLMPDPESFMDMQCAAERIVKAILNQEKVAVFGDYDVDGACSSALIARFLRYFEIEVKI 126

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           YIPDRI++GYGPN   M   + +GA LIITVDCG+ S DA++ A  +G DV+V+DHHQ+ 
Sbjct: 127 YIPDRIIEGYGPNEQAMRMLVQKGAHLIITVDCGANSPDAVRAARLEGADVVVLDHHQMT 186

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A ALVNPNR DD SGQGHLCAAGVVF+ L  +  +LR+        DLLS+LDLV
Sbjct: 187 EVHQEAVALVNPNRPDDFSGQGHLCAAGVVFVTLAWVNHLLRKKKFGEKLPDLLSMLDLV 246

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
           ALAT+CDVVPL G+NRA+VVKGL VAR   N G+ AL +   I  P+ + +LG+++GP I
Sbjct: 247 ALATICDVVPLQGVNRAFVVKGLQVARSMHNFGIAALTKVARIDEPLNSFHLGFLLGPRI 306

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NAGGRIG+  LG+RLL  +D  E + +A +LD LNQ R+ ME   L QAE+ + +   + 
Sbjct: 307 NAGGRIGDQALGARLLCCEDKDEADKIAERLDRLNQERQEMEGVQLAQAESYIDSLYQER 366

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +    IV+    WHPGI+G+LA+RLKE+F  P F+I+ +EDG G+GSGRSI+G D+G +V
Sbjct: 367 ETPMSIVIAHQEWHPGIIGILASRLKERFFCPVFSIALKEDGSGVGSGRSIDGIDLGALV 426

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             AV   +L KGGGH+MAAG+T++        ++ +K    +V  L       IDG L+A
Sbjct: 427 REAVMLNLLEKGGGHSMAAGITIQSTKIEIFREWLEKKVSLMVSRLRAKKSLSIDGCLSA 486

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
           S  N AL DM+E AGP+G+GN  PVF  P+H+L ++  V   HL++   + + + LQ IA
Sbjct: 487 SGANKALFDMIEKAGPFGSGNTTPVFVLPSHRLINLCEVGKGHLRLVISNMEGKKLQGIA 546

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           FR  GTPLG FL ++ G+ +HV G+L +NYW G+   QLRV+DA+ V
Sbjct: 547 FRAMGTPLGYFLSENIGEMIHVAGNLSLNYWNGTINPQLRVIDAAAV 593


>gi|218463397|ref|ZP_03503488.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           Kim 5]
          Length = 600

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 341/591 (57%), Positives = 430/591 (72%), Gaps = 1/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S    RWV+ L Q G NRALA++Q H +PD++ARVL  R V +D A +FL+P
Sbjct: 10  RAFLGVEKSALDNRWVARLDQAGQNRALAMSQVHGLPDLIARVLAGRGVPVDEAIEFLDP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP  LTDC+KAA R+++AI   E + IFGDYDVDGAAS ALM RFLSH  V  
Sbjct: 70  TIRSLMPDPHTLTDCEKAATRLMRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGVKT 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           N+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL  A  + IDV+VIDHHQ
Sbjct: 130 NIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V  E  P +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  L
Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKGILAIDLLQWL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++IG
Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E EM+A +LD LN+ R+ M++ ML++AEA+ L + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEAEMIAQRLDELNRERQAMDAVMLQEAEAEALAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D + ASVIV   ++WHPGIVGL+AARLKEKF RP+FAI+F+  G+G GSGRSI GFD+G
Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           KMV  AV+EG+LV GGGHAMAAGLTVER + GRL  FF + A   V  L      KIDG 
Sbjct: 430 KMVRAAVDEGLLVTGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLAANETLKIDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + LID LE+AGPYG+G+  P+FA P H+++  R+V   H+++T E+ D   L 
Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLD 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            IAFR   T LG  L+ SRG  +HV G L   +++G++R QLRV DA+P +
Sbjct: 550 GIAFRAADTALGNLLVNSRGASLHVAGTLGAEHYQGARRLQLRVCDAAPAK 600


>gi|325292975|ref|YP_004278839.1| single-stranded-DNA-specific exonuclease [Agrobacterium sp. H13-3]
 gi|325060828|gb|ADY64519.1| single-stranded-DNA-specific exonuclease [Agrobacterium sp. H13-3]
          Length = 602

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 338/588 (57%), Positives = 432/588 (73%), Gaps = 1/588 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFL VE S +  RWVS L Q   NRALA++Q HAIP+++ARVL  R V +D A  FL+P
Sbjct: 12  RAFLSVERSATEQRWVSRLDQAAQNRALAMSQIHAIPELIARVLAGRGVGVDEALAFLDP 71

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP +LTDC+KAA R+V+AI   EK+ IFGDYDVDGAAS ALM RFL+H  +  
Sbjct: 72  TIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIFGDYDVDGAASSALMYRFLAHFGLTP 131

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP+ M++    GA LI+TVDCGSTS+++L  A + G DV+VIDHHQ
Sbjct: 132 KIYIPDRIFEGYGPNPAAMQQLAANGATLILTVDCGSTSHESLNAAKDAGTDVVVIDHHQ 191

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR-QDNKVPLNFDLLSLL 242
           V SE  PA ALVNPNR DDLSGQGHLCAAGVVFLVLV   R+L+ + N+     DLL+LL
Sbjct: 192 VGSELPPAVALVNPNREDDLSGQGHLCAAGVVFLVLVATLRLLKDRRNRQAFTIDLLALL 251

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR   N GL AL  +  +  P+T  + G++IG
Sbjct: 252 DIVALATVCDVVPLKGLNRAYVVKGLIAARHMNNAGLAALFRKAGLGGPVTPYHFGFLIG 311

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DDS + +++A KLD LN+ R+ ME+ ML +AEA+ L + 
Sbjct: 312 PRINAGGRIGDAALGSRLLTLDDSSQADVIAEKLDELNRERQAMEAVMLAEAEAEALYEY 371

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D   A VIV   + WHPGIVGLLA+RLK++F RP+FAI+F+  GKG GSGRSI GFD+G
Sbjct: 372 GDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMG 431

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AV+ G+LVKGGGHAMAAGLTVER N G+L  FF++ A   V  L+ + V KIDG 
Sbjct: 432 RMVRAAVDAGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVSELVESSVLKIDGA 491

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + L+D LE AGPYG+G+  P+FA P H+L+ +R+V  +H+++T E+ D   L 
Sbjct: 492 IGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTSHVKITLEAMDGSRLD 551

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            IAFR    PLG+ L+ +RG+ +HV G +  + W+G +R QLRVLDA+
Sbjct: 552 GIAFRAAEAPLGQMLLNARGRSIHVAGTVGADLWQGQRRVQLRVLDAA 599


>gi|15888900|ref|NP_354581.1| single-stranded-DNA-specific exonuclease [Agrobacterium tumefaciens
           str. C58]
 gi|15156672|gb|AAK87366.1| single-stranded-DNA-specific exonuclease [Agrobacterium tumefaciens
           str. C58]
          Length = 602

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 342/588 (58%), Positives = 435/588 (73%), Gaps = 1/588 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFL VE S +  RWVS L Q G NRALA++Q HAIP+++ARVL  R V +D A  FL+P
Sbjct: 12  RAFLSVERSATEQRWVSRLDQAGQNRALAMSQIHAIPELIARVLAGRGVGVDDALAFLDP 71

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP +LTDC+KAA R+V+AI   EK+ IFGDYDVDGAAS AL  RFL+H  +  
Sbjct: 72  TIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIFGDYDVDGAASSALTYRFLAHFGLTP 131

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP+ M++    GA LI+TVDCGSTS+++LQ A + G DV+VIDHHQ
Sbjct: 132 EIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTSHESLQAAKDAGTDVVVIDHHQ 191

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR-QDNKVPLNFDLLSLL 242
           V +E  PA ALVNPNR DDLSGQGHLCAAGVVFLV+V   R+L+ + N+     DLLSLL
Sbjct: 192 VGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVMVATLRLLKDRRNRQAFTLDLLSLL 251

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR   N GL AL ++  +  P+T  + G++IG
Sbjct: 252 DIVALATVCDVVPLKGLNRAYVVKGLIAARHMNNAGLAALFKKAGLGGPVTPYHFGFLIG 311

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E E++A KLD LN+ R+ ME+AML +AEA+ L + 
Sbjct: 312 PRINAGGRIGDAALGSRLLTIDDTTEAEVIAEKLDELNRERQAMEAAMLAEAEAEALYEY 371

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D   A VIV   + WHPGIVGLLA+RLK++F RP+FAI+F+  GKG GSGRSI GFD+G
Sbjct: 372 GDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMG 431

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AVE G+LVKGGGHAMAAGLTVER N G+L  FF++ A   V  L+ + V KIDG 
Sbjct: 432 RMVRAAVETGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVESSVLKIDGA 491

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + L+D LE AGPYG+G+  P+FA P H+L+ +R+V  AH+++T E+ D   L 
Sbjct: 492 IGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTAHVKITLEAMDGSRLD 551

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            IAFR    PLG+ L+ +RG+ +HV G +  + W+G +R QLRVLDA+
Sbjct: 552 GIAFRAAEAPLGQMLLNARGRNIHVAGTVGADLWQGQRRVQLRVLDAA 599


>gi|116251859|ref|YP_767697.1| single-stranded-DNA-specific exonuclease [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256507|emb|CAK07591.1| putative single-stranded-DNA-specific exonuclease [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 586

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 337/586 (57%), Positives = 431/586 (73%), Gaps = 1/586 (0%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68
           +E S    RWV+ L Q G NRALA++Q H +PD++ARVL  R V++D A +FL+P+IR L
Sbjct: 1   MEKSALDNRWVARLDQAGQNRALAMSQIHGLPDLIARVLAGRGVTVDEAIEFLDPTIRSL 60

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           MPDP  LTDC+KAA R+++AI   E + IFGDYDVDGAAS ALM RFLSH  V A +YIP
Sbjct: 61  MPDPHKLTDCEKAATRLLRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGVRATIYIP 120

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           DR+ +GYGPNP+ + + ++ GAQLI+TVDCGSTS++AL  A  + IDV+VIDHHQV  E 
Sbjct: 121 DRVFEGYGPNPAAINQLVDNGAQLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQVTHEL 180

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVAL 247
            P +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  LD+VAL
Sbjct: 181 PPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILAIDLLQWLDIVAL 240

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
           ATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL+ +  ++ P+T  + G++IGP INA
Sbjct: 241 ATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALLRKAGLAGPVTPYHFGFLIGPRINA 300

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIG++ LGSRLL  DD+ E +++A +LD LN+ R+ ME+ ML++AEA+ L +  D + 
Sbjct: 301 GGRIGDAALGSRLLTLDDAGEADVIAQRLDELNRERQAMEAIMLQEAEAEALAEYGDGEG 360

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
           ASVIV   ++WHPGIVGL+AARLKEKF RP+FAI+F+  G+G GSGRSI GFD+G+MV  
Sbjct: 361 ASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMGRMVRA 420

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           AV+EG+LVKGGGHAMAAGLTVER N GRL  FF + A   V  L+     KIDG + AS 
Sbjct: 421 AVDEGLLVKGGGHAMAAGLTVERANLGRLRTFFTEKAERTVAGLVANETLKIDGAIGASG 480

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
             + LID LE+AGPYG+G+  P+FA P H+L+  R+V   H+++T E+ D   L  IAFR
Sbjct: 481 ATLELIDRLEAAGPYGSGHAQPLFAVPAHRLRDARLVGEKHVKVTLEAMDGSRLDGIAFR 540

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              TPLG  L+ SRG  +HV G L  ++++G++R QLRV DA+P +
Sbjct: 541 AADTPLGNLLINSRGASLHVAGSLGADHYQGARRIQLRVCDAAPAK 586


>gi|209549146|ref|YP_002281063.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534902|gb|ACI54837.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 600

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 340/591 (57%), Positives = 433/591 (73%), Gaps = 1/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S    RWV+ L Q G NRALA++Q H +PD++ARVL  R V+ D A +FL+P
Sbjct: 10  RAFLGVEKSALDNRWVARLDQAGQNRALAMSQIHGMPDLIARVLAGRGVTADEAIEFLDP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP ILTDC++AA R+V AI   E + IFGDYDVDGAAS ALM RFL+H  V A
Sbjct: 70  TIRGLMPDPHILTDCERAATRLVSAIERGENVAIFGDYDVDGAASSALMFRFLTHFGVKA 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           N+YIPDR+ +GYGPNP+ M + I+ GA+LI+TVDCGSTS++AL+ A  + IDV+VIDHHQ
Sbjct: 130 NIYIPDRVFEGYGPNPAAMNQLIDNGARLIVTVDCGSTSHEALEAAAARSIDVVVIDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V  E    +ALVNPNR DDLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  L
Sbjct: 190 VTHELPHCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRASGNKGILALDLLQWL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++IG
Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDTGEAEVIAQRLDELNRERQAMEAIMLQEAEAEALAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D + ASVIV   ++WHPGIVGL+AARLKEKF RP+FAI+F+  G+G GSGRSI GFD+G
Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +MV  AV+EG+LVKGGGHAMAAGLTVER + GRL  FF + +   V  L+     KIDG 
Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKSARTVANLVANETLKIDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + AS   + LID LE+AGPYG+G+  P+FA P H+++  R+V   H+++T E+ D   L 
Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTMEAMDGSRLD 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            IAFR   T LG  L+ SRG  +HV G L   +++G++R QLRV DA+P +
Sbjct: 550 GIAFRAADTALGNLLINSRGASLHVAGALGAEHYQGARRIQLRVCDAAPAK 600


>gi|288957790|ref|YP_003448131.1| single-stranded-DNA-specific exonuclease [Azospirillum sp. B510]
 gi|288910098|dbj|BAI71587.1| single-stranded-DNA-specific exonuclease [Azospirillum sp. B510]
          Length = 616

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 251/599 (41%), Positives = 357/599 (59%), Gaps = 11/599 (1%)

Query: 1   MND-QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD 59
           M +  AFL V  S+SG RW +    E   +A A+TQ   +P+IV RVL  R V+ +  + 
Sbjct: 19  MTEPAAFLNVANSLSGKRWQARPCDE--RQAQALTQGRGLPEIVGRVLAARGVTEESCET 76

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FLNP+++ L+PDP    D D AA RI +AI + E + +FGDYDVDGA S AL+ RF    
Sbjct: 77  FLNPTLKALLPDPSRFRDMDPAAERIARAIRDGEPVAVFGDYDVDGATSAALLRRFFRAL 136

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
             +  +Y+PDRI +GYGPN + + +   EG +L++TVDCG +++ AL+ A    ++V+V+
Sbjct: 137 GADIRVYVPDRIKEGYGPNAAALLRLKGEGVRLVVTVDCGISAFAALEAAAEAELEVVVL 196

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FD 237
           DHH  +    PA ALVNPNRLD+      LCAAGV F+ +V + R LR           +
Sbjct: 197 DHHAAEPRLPPAVALVNPNRLDEDGAYRTLCAAGVTFITIVAVNRALRTSGFYRDRAEPN 256

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
           L+  LDLVAL TVCDVVPL GLNRA V +GL V  R+ NPGL AL +   +     A + 
Sbjct: 257 LMEWLDLVALGTVCDVVPLTGLNRALVAQGLKVMARRANPGLAALSDVAGVKEKPDAYHA 316

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           GY++GP +NAGGR+G S+LG+RLL +DD  E   LA +L+  N  RR +E A+L++A  +
Sbjct: 317 GYVLGPRVNAGGRVGASDLGARLLSTDDPVEAMELAQRLEGHNAERRAVEQAVLDEALER 376

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----KGIGSG 413
           V T+     +  ++ V G  WHPG++G++AARLKE++ RP+  ++ EE       G  SG
Sbjct: 377 VATEAGR--ETDLVFVTGAGWHPGVIGIVAARLKERYSRPACVVALEETADGTLIGKASG 434

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RS+ G D+G  V  A +EG+L+ GGGH MAAG TV       L DF        V A   
Sbjct: 435 RSVRGVDLGAAVIAARQEGLLLAGGGHRMAAGFTVAGDKIDALRDFLHGRISEQVAAAPL 494

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
            P+ ++DG L+    ++ L+ ML+  GPYG GN  P FA  + ++    VV   H++   
Sbjct: 495 VPMLELDGALSVGGASVGLVTMLDKLGPYGTGNSEPRFAIADARVVRADVVGANHVRCIL 554

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +  D   L+AIAFR   + +G+ L+  RG   H+ G L ++ W GS+  QL + DA+P 
Sbjct: 555 QGNDGARLKAIAFRALDSDMGQALLTGRGTPFHLAGVLRIDRWNGSEGVQLLIDDAAPA 613


>gi|222148683|ref|YP_002549640.1| single-stranded-DNA-specific exonuclease [Agrobacterium vitis S4]
 gi|221735669|gb|ACM36632.1| single-stranded-DNA-specific exonuclease [Agrobacterium vitis S4]
          Length = 600

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 336/591 (56%), Positives = 430/591 (72%), Gaps = 1/591 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           ++AFL VE S+SG RWVS L Q G+NR+LAI Q H IPD+VARVL  R V++  A+ FL+
Sbjct: 9   ERAFLNVETSVSGQRWVSRLDQAGLNRSLAIAQVHGIPDLVARVLAGRGVAVADAQAFLD 68

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  LTD DKAA R+V AI  SE++ IFGDYDVDGAAS AL+ RFL+H  + 
Sbjct: 69  PTIRDLMPDPSSLTDGDKAADRLVAAIMRSERVAIFGDYDVDGAASSALLWRFLAHFGIE 128

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           A +YIPDRI +GYGPN   + + I  GAQLI+TVDCGSTS++AL+ A  +G+DV+VIDHH
Sbjct: 129 AEIYIPDRIFEGYGPNAVAIGQLIERGAQLIVTVDCGSTSHEALEEARRRGVDVVVIDHH 188

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSL 241
           Q+  +     ALVNPNR DDLSGQGHLCAAGVVF+VLV   R LR+         DLL+ 
Sbjct: 189 QMGQDLPACLALVNPNRSDDLSGQGHLCAAGVVFMVLVGTLRKLREAGHGAARSLDLLAW 248

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL++   I  P+T  + G+++
Sbjct: 249 LDLVALATVCDVVPLKGLNRAYVVKGLIAARHQQNAGLAALLKIAGIGGPVTPYHFGFLV 308

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LGSRLL  DD+ E + +A +LD LN+ R+ ME+ ML +AEA+ + +
Sbjct: 309 GPRINAGGRIGDAALGSRLLTLDDAAEADEIAAQLDDLNRQRQAMEAQMLAEAEAEAMAE 368

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
               + A+VI+   + WHPGIVGLLAARLKE+F RP+FAI+F+  GKG GSGRSI GFD+
Sbjct: 369 YGTGENAAVILTAREGWHPGIVGLLAARLKERFQRPAFAIAFDGSGKGTGSGRSIAGFDM 428

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           GKMV  AV+ G+LVKGGGHAMAAGLTVER N G+L  FF + A   V AL      KIDG
Sbjct: 429 GKMVRAAVDNGLLVKGGGHAMAAGLTVERGNLGKLRAFFDEQAQEKVMALSAIRALKIDG 488

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            + AS   +ALID+LE+AGPYG+G+  P+FA P H+++  R++  +H+++T E+ D   +
Sbjct: 489 AVGASGATLALIDLLETAGPYGSGHSQPIFAIPAHRIRDSRLIGTSHVKVTLEAPDGSRI 548

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             IAFR   TPLG+ L+  RG  +HV G L    W+G++R Q+R+LDA+P 
Sbjct: 549 DGIAFRAKETPLGDLLLGRRGDAVHVAGCLGAELWQGTRRIQIRILDAAPA 599


>gi|312115910|ref|YP_004013506.1| single-stranded-DNA-specific exonuclease RecJ [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221039|gb|ADP72407.1| single-stranded-DNA-specific exonuclease RecJ [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 609

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 273/595 (45%), Positives = 363/595 (61%), Gaps = 3/595 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
            AFLGVE S  G +W+  L  +  + A AI Q+H +P+IV R+L  R VS+D   D LNP
Sbjct: 15  SAFLGVERSARGLKWIERLAPQDAHIAAAIAQRHNLPEIVGRILAARGVSLDEVADVLNP 74

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L PDP   TD DKAA RI +AI   E+I IFGDYDVDGA+S AL+ RFL+   ++A
Sbjct: 75  TLRALCPDPSTFTDMDKAADRIARAIETGERIAIFGDYDVDGASSSALLKRFLAWHGLDA 134

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   + + I +GAQLI+TVDCGSTS++AL  A  +G++V+V+DHHQ
Sbjct: 135 RIYIPDRITEGYGPNGPAIAQLIEDGAQLIVTVDCGSTSFEALDVAAKRGVEVVVVDHHQ 194

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSL 241
           V  E   A+A+VNPNR D LSGQGHLCAAGV FL+ V   R LR           DLL  
Sbjct: 195 VNEELPVAHAVVNPNRQDCLSGQGHLCAAGVTFLLCVAAQRRLRAKGAYAKSPAPDLLGW 254

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LD+VALATVCDVVPL G+NRA+VV+GL V R + NPGL+AL +   ++ P +   LG+++
Sbjct: 255 LDIVALATVCDVVPLSGVNRAFVVQGLKVLRNRRNPGLRALADAAGVNKPPSPYTLGFVL 314

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG+++LG+RLL S+D  E   +A  LD LN+ RR +E   +E+A A     
Sbjct: 315 GPRINAGGRIGDASLGARLLASEDDIETRRIAETLDRLNRERREIEIKTVEEAAAWADRT 374

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFD 420
             +   A +I+     WH G+VGL A+RL E+F RP    S ++D G+  GS RS+ G D
Sbjct: 375 LMEDPSAPIIIAGSPSWHKGLVGLAASRLTERFQRPCLIFSQDDDAGESTGSARSVSGVD 434

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           IG  V  AVE G+  KGGGH MAAG+TV+      L  F +             P   ID
Sbjct: 435 IGAAVRGAVEAGVAKKGGGHTMAAGITVDTARLHELAAFLRAALDPAYRVASAAPELAID 494

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           GVL   A  +     LE+AGPYG GNP P F+  + +   I+ ++  HL++  +  D   
Sbjct: 495 GVLKPRAATLDFCAQLEAAGPYGQGNPAPRFSLASVRPTMIKEISGGHLRLALQDVDGSQ 554

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           + A+AFR   T +G  L   R    HV G +  + W G  R +  + D +P    
Sbjct: 555 ISAVAFRAAQTEIGAALAAGRDLACHVAGRIERDEWGGKSRIEFHIEDVAPANAR 609


>gi|83312829|ref|YP_423093.1| single-stranded DNA-specific exonuclease [Magnetospirillum
           magneticum AMB-1]
 gi|82947670|dbj|BAE52534.1| Single-stranded DNA-specific exonuclease [Magnetospirillum
           magneticum AMB-1]
          Length = 597

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 253/588 (43%), Positives = 366/588 (62%), Gaps = 8/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGVE S+SG RW++  G E    A A+ Q+ A+P++V RVL +R + +D A+ FLNP+
Sbjct: 13  AFLGVERSLSGRRWLARPGDE--RLAQALAQRLALPELVGRVLASRGIGLDEAESFLNPT 70

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L   DKA  R+V A+   E I IFGDYDVDGA S AL+   L+     A 
Sbjct: 71  LRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIFGDYDVDGATSSALLRNALADMGAKAR 130

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   + +  +EG  +++TVDCG+T++DAL+ AT  G+D+IV+DHH  
Sbjct: 131 VYIPDRIKEGYGPNAPALLRLRDEGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHHVG 190

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242
           ++    A A++NPNRLD+ S  GHL A GV FL+ V + R L+           DL+  L
Sbjct: 191 EAALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWYQSRPAPDLMRWL 250

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVAL TVCDVVPL+G+NRA VV+GL V  ++ N GL AL +   +     +  LGY++G
Sbjct: 251 DLVALGTVCDVVPLVGVNRALVVQGLKVMAKRANVGLAALADVAGVKERPDSYTLGYVLG 310

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +NAGGR+GE+ LG+RL+ +D+  E   +A +LD  N++R+ +E+ +L  A  +V T+ 
Sbjct: 311 PRVNAGGRVGEAELGTRLMSTDNPAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVETRP 370

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
           DD     ++V  G+ WHPG++G++A RLKE++GR +  ++  E  +G GSGRS+ G D+G
Sbjct: 371 DD--GRPLLVAAGENWHPGVIGIVAGRLKERYGRVACVVA-LEGDQGKGSGRSVPGLDLG 427

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             +  A + G+L  GGGHAMAAG TV R     L DF  +     +      P+ ++DG 
Sbjct: 428 SAIIAARQAGLLRAGGGHAMAAGFTVARDKLTALSDFLAERLQAQL-EGDLVPLLELDGA 486

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L+A A  I L++ L   GP+G+GNP P FA    ++    VV   H+++       + L+
Sbjct: 487 LDAGAAGIELVETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTGAGGKRLK 546

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           AIAFR   + +G  L+ S G   H+ G L V+ W+G+   QL V DA+
Sbjct: 547 AIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVDDAA 594


>gi|46201274|ref|ZP_00055375.2| COG0608: Single-stranded DNA-specific exonuclease [Magnetospirillum
           magnetotacticum MS-1]
          Length = 596

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 252/588 (42%), Positives = 370/588 (62%), Gaps = 8/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGVE S+SG RW++  G E    A+ + Q+  +P++V RVL +R + +D A+ FLNP+
Sbjct: 12  AFLGVERSLSGRRWLARPGDE--RLAVTLAQRLGLPELVGRVLASRGIGLDEAESFLNPT 69

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L   DKA  R+V+A+  +E I IFGDYDVDGA S AL+   L+     A 
Sbjct: 70  LRDLLPDPGHLKGMDKAVERLVKAVTGAETIGIFGDYDVDGATSSALLKNALADMGAKAR 129

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   + +   EG  ++ITVDCG+T+++ALQ AT  G+D+IV+DHH  
Sbjct: 130 VYIPDRIKEGYGPNAPALLRLKAEGVGVVITVDCGTTAFEALQTATQAGLDMIVVDHHVG 189

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242
           ++    A A++NPNRLD+ S  GHL A GV FL+ V + R L+           DL+  L
Sbjct: 190 EAALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWYQSRPAPDLMRWL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVAL TVCDVVPL+G+NRA VV+GL V  ++GN GL AL +   +     +  LGY++G
Sbjct: 250 DLVALGTVCDVVPLVGVNRALVVQGLKVMAKRGNVGLAALADVAGVKERPDSYTLGYVLG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +NAGGR+GE+ LG+RL+ ++D+ E   +A +LD  N++R+ +E+ +L  A  +V T+ 
Sbjct: 310 PRVNAGGRVGEAELGTRLMSTEDAAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVETRP 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
           DD     +++  G+ WHPG++G++A RLKE++GR +  ++  E G+G GSGRS+ G D+G
Sbjct: 370 DD--GRPLLMAAGENWHPGVIGIVAGRLKERYGRVACVVA-LEGGQGKGSGRSVPGLDLG 426

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             +  A + G+L+ GGGHAMAAG TV R     L DF  +     +      P+ ++DG 
Sbjct: 427 SAIIAARQAGLLLAGGGHAMAAGFTVARDKLNDLSDFLAERLQAQL-EGDLVPLLELDGA 485

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L+A A  I L++ L   GP+G+GNP P FA    ++    VV   H+++       + L+
Sbjct: 486 LDAGAAGIELVETLAQVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLMLTGAGGKRLK 545

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           AIAFR   + +G  L+ S G   H+ G L V+ W+G+   QL + DA+
Sbjct: 546 AIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIIDDAA 593


>gi|304391919|ref|ZP_07373861.1| single-stranded-DNA-specific exonuclease RecJ [Ahrensia sp. R2A130]
 gi|303296148|gb|EFL90506.1| single-stranded-DNA-specific exonuclease RecJ [Ahrensia sp. R2A130]
          Length = 597

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 290/593 (48%), Positives = 393/593 (66%), Gaps = 2/593 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           D+ FL VE SISG RW   + +    +A A+ ++H+IP++VARVL  R+V+ D A  FL+
Sbjct: 5   DRPFLDVESSISGQRWEERMSRTQAGQAEAMRERHSIPELVARVLAARDVTADEALGFLD 64

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P +R LMPDP +LT  D AA R+V AI   E + +FGDYDVDGA S AL+  FL +  V 
Sbjct: 65  PKLRDLMPDPSLLTGMDAAADRLVSAIAAKEPVAVFGDYDVDGATSSALLAAFLRNFDVP 124

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             +YIPDRI +GYGPN + + +    GA+L++TVDCGSTS+DAL  A + G+D +V+DHH
Sbjct: 125 VEIYIPDRIFEGYGPNENAIRELAERGAKLLVTVDCGSTSHDALAVAKSLGLDAVVLDHH 184

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD--LLS 240
           QV  E     ALVNPNR DDLSGQGHLCAAGVVFL LV   R +RQ  K+P +    L+ 
Sbjct: 185 QVGDELPDVIALVNPNRQDDLSGQGHLCAAGVVFLTLVATQRAMRQQGKLPTDKPVDLMQ 244

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LDLVAL TVCDVVPL GLNRA+V +G+ V ++Q N GL AL        P    +LG++
Sbjct: 245 SLDLVALGTVCDVVPLKGLNRAFVTRGIEVMQKQRNVGLAALARVARQDGPAAPWHLGFV 304

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRIG++ LG+RLL + D  E E +A +LD LN  R+ +E+AML QA  +   
Sbjct: 305 LGPRINAGGRIGDAALGARLLTTSDPTEAEEIAQQLDTLNGERQNIETAMLAQAIDEAEA 364

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +    +  SV+V E D WH G+VGLLA+RLK++F RP+FAI+F+  G+G GSGRSI G D
Sbjct: 365 EIGFSEGPSVLVTESDTWHAGVVGLLASRLKDRFNRPTFAIAFDGRGRGQGSGRSIPGCD 424

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G+ V  AV+EG+L+KGGGHAMAAG+T+ER   G    F ++   + V     +   +ID
Sbjct: 425 LGRTVRAAVDEGLLLKGGGHAMAAGITIERDKLGDFRAFMEERLCDDVATARLSRSVRID 484

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L+A    + + D L +AGP+GAG+  P+ AFP H L+   VV   H++ +  S D   
Sbjct: 485 GALSARGATVEMFDQLAAAGPFGAGHSQPLLAFPRHTLRFSDVVGKGHVRFSIGSADGAE 544

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           L+ I+FR   TPLG+ L+  RGK MH  G L  +++RG++R QLR++D +  +
Sbjct: 545 LRGISFRAVDTPLGDALLDGRGKVMHFAGTLSADFFRGTRRVQLRLVDVALAQ 597


>gi|182678538|ref|YP_001832684.1| single-stranded-DNA-specific exonuclease RecJ [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634421|gb|ACB95195.1| single-stranded-DNA-specific exonuclease RecJ [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 610

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 275/601 (45%), Positives = 376/601 (62%), Gaps = 7/601 (1%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
           + + FL VE S+ G  W   L   G  +ALA+ Q H   D+++RVL  R ++ +  + +L
Sbjct: 9   SSRPFLNVERSVQGRVWRDRLDASGQAQALALAQIHGHGDLLSRVLAGRGITPEDCEAYL 68

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +PS+R LMPDP IL D DKAA R+ +AI   EKI IFGDYDVDGA+S AL+  + + C  
Sbjct: 69  DPSLRRLMPDPTILLDMDKAAVRMARAIMAGEKIAIFGDYDVDGASSSALLADYFTACGT 128

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   ++     GA+L++TVDCG+TS++ L  A   G+D IV+DH
Sbjct: 129 PFQIHIPDRIFEGYGPNVDAIQALAAGGAKLLVTVDCGTTSHNPLGEAAKLGLDPIVLDH 188

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238
           HQ    ++P   +VNPNR DDLSG G LCAAGVVF++LV + R LR+           DL
Sbjct: 189 HQAP-ADLPEAIIVNPNRQDDLSGLGQLCAAGVVFMLLVALNRRLREQGFFTAERREPDL 247

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           L+ LDLVALATV DV PL GLNRA+V KGL V + +   GL+AL +         A +LG
Sbjct: 248 LAFLDLVALATVADVAPLTGLNRAFVTKGLAVMQMRQRAGLRALFDCAGAREAPKAGHLG 307

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           ++IGP INAGGRIG++ LG+RLLI  D  + E +A +LD LN+ R+++E+  LEQA  + 
Sbjct: 308 FLIGPRINAGGRIGDAALGARLLIERDQIKAEEIARRLDTLNRERQVIEAETLEQALLQA 367

Query: 359 LTQ---CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
             +    DD +  + IV   + WHPGIVGL+A RLK+K+  P+FA++F E G G GSGRS
Sbjct: 368 EAEQGLQDDAKAGAAIVTASEDWHPGIVGLVATRLKDKYRCPAFAVAFNESGIGTGSGRS 427

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           I G D+G  V  AVE G+L+KGGGHAMAAG+T+ R +      F ++     V A  +  
Sbjct: 428 IAGVDLGHAVREAVEAGLLIKGGGHAMAAGITLVRDHLAAFRAFLEEKLTEAVTAGRSGD 487

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535
              +D  L AS  N AL+  LE AGP+GAGNP PVF  P H+L    VV   H++   E+
Sbjct: 488 ALFVDAALTASGANPALMASLEKAGPFGAGNPEPVFVLPAHRLMDASVVGNGHVRFRAEA 547

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
            D   ++ IAFR    PLG+ L+  RG +MH  G L ++ + G +R Q+R+ D +P+   
Sbjct: 548 GDGARIEGIAFRSAAEPLGDALLAGRGTKMHFAGTLMLDRFGGRERVQMRLTDLAPLATQ 607

Query: 596 H 596
            
Sbjct: 608 K 608


>gi|260434121|ref|ZP_05788092.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417949|gb|EEX11208.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 580

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 247/589 (41%), Positives = 344/589 (58%), Gaps = 10/589 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FL VE S++G RWV    +     A  + Q+  +P  + +VL  R V+   A+ FL P 
Sbjct: 2   SFLSVEHSLTGRRWVGPPPEMD-RAAEMLAQQTDLPRPLCQVLARRGVTPAEAESFLAPK 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D + AA R +QA+   ++I IF DYDVDG +S AL++ +L    +NA 
Sbjct: 61  LRDLLPDPRELKDMETAAARFLQAVRQKQRIAIFADYDVDGGSSAALLIVWLRQMGLNAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN   M +       LII VDCG+ S+DA+  A   G DVIV+DHH  
Sbjct: 121 LYVPDRIDEGYGPNAPAMAQLAA-THDLIICVDCGTLSHDAIAAAQ--GADVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+     +LCAA VVFL+LV   R LR         DL+++LDL
Sbjct: 178 GETLPDCVAVVNPNRQDESGDLAYLCAAAVVFLMLVEAGRQLRAAG--TKGPDLMAMLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G+NRA V +GL V  R+  PGL AL +   + +   + +LG+++GP 
Sbjct: 236 VALATVADVAPLVGVNRALVQQGLKVMARRQRPGLVALSDVARMDTAPNSYHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +D   E E LA +LD LN  RR +E+A+   A A+   +  D
Sbjct: 296 VNAGGRIGQADLGARLLSTDSPAEAEALAKRLDALNTERRDIENAVRAAALAQAEDRGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   GD WHPG+VG++A+RLKE   RP+  I F +  +G GSGRS+ G D+G  
Sbjct: 356 ---APLVWAAGDGWHPGVVGIVASRLKETANRPAIVIGF-DGDEGKGSGRSVSGVDLGAA 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+LVKGGGH MAAGLTV R           +               K+DGVL 
Sbjct: 412 IHRLASEGLLVKGGGHKMAAGLTVMRDQLEPAMARLSELLAKQGAGEGGPADLKLDGVLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  +ALI+ +E AGP+GAG P P FA P+ +++  + V   HL+++        + AI
Sbjct: 472 PGAATVALIEQIEQAGPFGAGAPAPRFALPDLQIRFAKRVGETHLKLSLSDGMGGGIDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           AF  +  P+G+ L    G R H  G L VN W G +  QLR+ DA+  +
Sbjct: 532 AFGAFDGPMGDRLANHGGARFHFAGRLEVNTWGGRQSVQLRLEDAAEAK 580


>gi|306844173|ref|ZP_07476766.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO1]
 gi|306275448|gb|EFM57185.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO1]
          Length = 594

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 317/590 (53%), Positives = 401/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIERRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSAPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G+ +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGRSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|254714329|ref|ZP_05176140.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M644/93/1]
 gi|254717228|ref|ZP_05179039.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M13/05/1]
 gi|261219046|ref|ZP_05933327.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M13/05/1]
 gi|261322106|ref|ZP_05961303.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M644/93/1]
 gi|260924135|gb|EEX90703.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M13/05/1]
 gi|261294796|gb|EEX98292.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M644/93/1]
          Length = 594

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 318/590 (53%), Positives = 401/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +  D   ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISDGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|83593743|ref|YP_427495.1| RecJ exonuclease [Rhodospirillum rubrum ATCC 11170]
 gi|83576657|gb|ABC23208.1| RecJ exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 606

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 250/593 (42%), Positives = 361/593 (60%), Gaps = 9/593 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           D AFLGVE S  G RWV   G E   +ALAI+Q+  +P++V RVL  R V ++ A  FL 
Sbjct: 17  DAAFLGVERSRGGRRWVLRPGDE--RQALAISQRLGVPEVVGRVLTGRGVQVEEADGFLT 74

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R L+PDP  L D DKA  R+ +A+ + E I IFGDYDVDGA S ALM RF       
Sbjct: 75  PTLRALLPDPGHLLDMDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLGAR 134

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDR+++GYGPN   +E    +GA++++TVDCG +++DAL+ A   G+DV+V DHH
Sbjct: 135 VLIHIPDRVLEGYGPNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHH 194

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDL 238
           + ++E   A A+VNP RLD+ S   HL A GV FL+ V I R LR             DL
Sbjct: 195 EARTELPAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDL 254

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           ++LLDLVAL TVCD+VPLIG+NRA V +GL V  ++ NPG+ AL E   +   + A +LG
Sbjct: 255 MALLDLVALGTVCDMVPLIGVNRALVQQGLKVIAKRTNPGIAALAEVSGVRDRVDAFHLG 314

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +M+GP +NAGGR+G++ +G+ LL S+D  E    A +LD  N  R+ +E+A+L QA  +V
Sbjct: 315 FMLGPRVNAGGRVGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQV 374

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
             +        ++   G  WHPG+VG++A+RLKE++G P+ A++  + G   GSGRS+ G
Sbjct: 375 --EAAPANDLPLVFASGTDWHPGVVGIVASRLKERYGLPACAVA-LDGGLAKGSGRSVGG 431

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+G++V  A E G+L  GGGHAMAAG ++          F  +   + V AL       
Sbjct: 432 VDLGRVVIAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLD 491

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           +DGVL+    N  L+  L  AGPYG+GNP P FA  N ++  + VV + H++        
Sbjct: 492 LDGVLDVRGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSG 551

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            +L+A+AF+   + +G  L+ + G  +HV G L ++ ++G +   L V D +P
Sbjct: 552 GSLKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVDDVAP 604


>gi|110633344|ref|YP_673552.1| exonuclease RecJ [Mesorhizobium sp. BNC1]
 gi|110284328|gb|ABG62387.1| exonuclease RecJ [Chelativorans sp. BNC1]
          Length = 594

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 307/587 (52%), Positives = 395/587 (67%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           + FLGV  S  G  W   L   G N AL I Q H +P+IVARVL  R V+++ A+ FL P
Sbjct: 6   RYFLGVRQSARGVSWEHRLDSRGENVALGIAQSHGVPEIVARVLAGRGVALEEAERFLTP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           SIR L+PDP  LTD +KAARRI  A++  E++ IFGDYDVDGA S A++ RFL+H  V A
Sbjct: 66  SIRDLLPDPAGLTDMEKAARRIADAVHAGERVAIFGDYDVDGAVSSAILKRFLAHYGVTA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDR+ +GYGPNP  M + I  GA+LI+TVDCG+ S  ++  A   G +V+V+DHHQ
Sbjct: 126 EIYIPDRLFEGYGPNPDAMRELIRRGAKLIVTVDCGTNSAPSIAAANEMGAEVVVLDHHQ 185

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           V  +   A A+VNPNR DDLSGQGHLCAAGVVFL LV   RILR++ +     DLLS+LD
Sbjct: 186 VGGDLPEAVAIVNPNREDDLSGQGHLCAAGVVFLALVQTTRILREELRATPPPDLLSMLD 245

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATVCDVVPL+G+NRA+V KGL+ AR+   PGL AL     I  P+   +LG+++GP
Sbjct: 246 LVALATVCDVVPLVGVNRAFVAKGLLAARQMRTPGLSALARVARIGEPLNCHHLGFLLGP 305

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG + LGS LL + +  E E +A  LD LNQ R+ ME+AML +A A+   +  
Sbjct: 306 RINAGGRIGNAALGSLLLATVEPGEAESIAATLDRLNQERQAMETAMLAEARAEADAELM 365

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                +V+V   D WHPGIVGL+A+RLK+   RP+FAI+F+ +G G GSGRSI GFD+G+
Sbjct: 366 SGDGPAVLVTASDTWHPGIVGLIASRLKDHARRPTFAIAFDMNGMGTGSGRSITGFDLGR 425

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  AV EG+LVKGGGHAMAAG+TVER   G L  FF++ A   V  L  +   +ID  L
Sbjct: 426 LVRDAVSEGLLVKGGGHAMAAGITVERKKLGALRAFFEEKAAGAVSLLRQSESLRIDAAL 485

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +A    + L++ LE+AGPYG+G+P PV A P H+L   ++V   H++    S     LQA
Sbjct: 486 SAEGATLELLETLEAAGPYGSGHPAPVLALPRHRLADAKLVGNGHIRADLRSLSGARLQA 545

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAFR   T LG FL  SRG  +HV G L VN+W GS+  Q R+ DA+
Sbjct: 546 IAFRAAETDLGNFLFASRGASVHVAGTLAVNHWNGSRSVQFRITDAA 592


>gi|17987011|ref|NP_539645.1| single-stranded-DNA-specific exonuclease RECJ [Brucella melitensis
           bv. 1 str. 16M]
 gi|23502146|ref|NP_698273.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis 1330]
 gi|161619221|ref|YP_001593108.1| single-stranded-DNA-specific exonuclease RecJ [Brucella canis ATCC
           23365]
 gi|163843533|ref|YP_001627937.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis ATCC
           23445]
 gi|225852764|ref|YP_002732997.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           ATCC 23457]
 gi|254702006|ref|ZP_05163834.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 5
           str. 513]
 gi|254710333|ref|ZP_05172144.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis B2/94]
 gi|256031827|ref|ZP_05445441.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis M292/94/1]
 gi|256044911|ref|ZP_05447815.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256113827|ref|ZP_05454620.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           bv. 3 str. Ether]
 gi|256160006|ref|ZP_05457715.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M490/95/1]
 gi|256255227|ref|ZP_05460763.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti B1/94]
 gi|256263751|ref|ZP_05466283.1| phosphoesterase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369691|ref|YP_003107201.1| single-stranded-DNA-specific exonuclease RecJ [Brucella microti CCM
           4915]
 gi|260565488|ref|ZP_05835972.1| phosphoesterase [Brucella melitensis bv. 1 str. 16M]
 gi|260566210|ref|ZP_05836680.1| phosphoesterase [Brucella suis bv. 4 str. 40]
 gi|261222424|ref|ZP_05936705.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti B1/94]
 gi|261317897|ref|ZP_05957094.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis B2/94]
 gi|261752573|ref|ZP_05996282.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 5
           str. 513]
 gi|265988926|ref|ZP_06101483.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis M292/94/1]
 gi|265991339|ref|ZP_06103896.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265995176|ref|ZP_06107733.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           bv. 3 str. Ether]
 gi|265998391|ref|ZP_06110948.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M490/95/1]
 gi|17982663|gb|AAL51909.1| single-stranded-DNA-specific exonuclease recj [Brucella melitensis
           bv. 1 str. 16M]
 gi|23348109|gb|AAN30188.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis 1330]
 gi|161336032|gb|ABX62337.1| single-stranded-DNA-specific exonuclease RecJ [Brucella canis ATCC
           23365]
 gi|163674256|gb|ABY38367.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis ATCC
           23445]
 gi|225641129|gb|ACO01043.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           ATCC 23457]
 gi|255999853|gb|ACU48252.1| single-stranded-DNA-specific exonuclease RecJ [Brucella microti CCM
           4915]
 gi|260151556|gb|EEW86650.1| phosphoesterase [Brucella melitensis bv. 1 str. 16M]
 gi|260155728|gb|EEW90808.1| phosphoesterase [Brucella suis bv. 4 str. 40]
 gi|260921008|gb|EEX87661.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti B1/94]
 gi|261297120|gb|EEY00617.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis B2/94]
 gi|261742326|gb|EEY30252.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 5
           str. 513]
 gi|262552859|gb|EEZ08849.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti
           M490/95/1]
 gi|262766289|gb|EEZ12078.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           bv. 3 str. Ether]
 gi|263002123|gb|EEZ14698.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263093809|gb|EEZ17814.1| phosphoesterase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661123|gb|EEZ31384.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis M292/94/1]
 gi|326409291|gb|ADZ66356.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           M28]
 gi|326539002|gb|ADZ87217.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis
           M5-90]
          Length = 594

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 317/590 (53%), Positives = 400/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|254704547|ref|ZP_05166375.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 3
           str. 686]
 gi|261755231|ref|ZP_05998940.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 3
           str. 686]
 gi|261744984|gb|EEY32910.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 3
           str. 686]
          Length = 594

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 317/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPVFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|254719319|ref|ZP_05181130.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. 83/13]
 gi|265984321|ref|ZP_06097056.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. 83/13]
 gi|306839094|ref|ZP_07471911.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NF
           2653]
 gi|264662913|gb|EEZ33174.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. 83/13]
 gi|306405641|gb|EFM61903.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NF
           2653]
          Length = 594

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 316/590 (53%), Positives = 400/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R L+PDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLLPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAVKGASLIVTVDCGTNSAPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARIARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|225627737|ref|ZP_03785774.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti str.
           Cudo]
 gi|260168961|ref|ZP_05755772.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. F5/99]
 gi|261758454|ref|ZP_06002163.1| phosphoesterase [Brucella sp. F5/99]
 gi|225617742|gb|EEH14787.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti str.
           Cudo]
 gi|261738438|gb|EEY26434.1| phosphoesterase [Brucella sp. F5/99]
          Length = 594

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 316/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +L Y+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLRYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|297717882|gb|ADI50084.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Odyssella
           thessalonicensis L13]
          Length = 591

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 335/580 (57%), Gaps = 9/580 (1%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           S+ G RWV    +     AL + Q H I    A +L+ R ++   A  FL P++R LMPD
Sbjct: 19  SVGGRRWVF--DEVNPREALQLAQNHQISTFAATILLKRGINFQNAASFLQPTLRELMPD 76

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L D      R+V+AI + E I +FGDYDVDGA + AL+ R+     ++  +YIP RI
Sbjct: 77  PSHLKDLSVGVDRVVKAIQSQETIAVFGDYDVDGATATALLKRYFRDIGISLRVYIPQRI 136

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGP    M++   EG   ++ VDCG+T++  L+ A   G+DVIV+DHH  ++   PA
Sbjct: 137 EEGYGPTVPAMQQLAKEGTTTLLMVDCGTTAFTPLEAAVQLGMDVIVLDHHVSQASLPPA 196

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALAT 249
            A++NPNR+D+ S   +LCAAGV F+ LV ++R LR +         DL   LDLVAL T
Sbjct: 197 TAIINPNRIDENSPLTNLCAAGVSFIFLVALHRQLRLEGWFAQRPEPDLRQYLDLVALGT 256

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309
           VCDV+ L GLNRA+V +GL V  R+ N GL+ L +   +    +A +LG+++GP INAGG
Sbjct: 257 VCDVMTLTGLNRAFVAQGLKVMARRSNHGLRCLADLAGMDDTPSAYHLGFLLGPRINAGG 316

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G +  GSRLL + D  E + LA +LD+ N+ R+ +E+ +LE+A  ++ TQ   + +  
Sbjct: 317 RVGRAEYGSRLLSTLDELEAQQLARELDLYNKERQAIETLVLEEAIHQIETQG--LHRQP 374

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +I+V  + WHPG++G++A RLKE++ RP+  +   +   G GSGRSI G ++G  +  A 
Sbjct: 375 LILVGQEGWHPGVIGIVAGRLKERYNRPACVVG-FDADIGKGSGRSIAGVNLGAAMHAAC 433

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             G+L  GGGH MAAG TV R  F    +F +    + +      P  +IDG+L  S   
Sbjct: 434 HHGLLTAGGGHLMAAGFTVMRDQFDNFYNFLKDNLKHQL--ETLEPTLEIDGILTPSGAT 491

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
           + L+  L+   P+G GNP P F     K+     V + H++ T E +D   L+A+AFR  
Sbjct: 492 LDLVHELKRLEPFGNGNPTPKFCIHKAKVTYAEPVGVNHIRCTLEGEDGTRLKAMAFRAL 551

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            TPLG+ +M    K + V G L V+ W G       + D 
Sbjct: 552 ETPLGDAIMARSNKSIQVAGTLKVDTWNGRCSVTCFIDDV 591


>gi|306840265|ref|ZP_07473039.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO2]
 gi|306289792|gb|EFM60974.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO2]
          Length = 594

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 317/590 (53%), Positives = 400/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSAPSITAARQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVLRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|75675837|ref|YP_318258.1| RecJ exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74420707|gb|ABA04906.1| exonuclease RecJ [Nitrobacter winogradskyi Nb-255]
          Length = 613

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 276/591 (46%), Positives = 365/591 (61%), Gaps = 3/591 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
             AFLGV  S +G  W   L   G  RALAI Q+H +P+++ARV+  R V ID   DFL+
Sbjct: 13  PDAFLGVSHSATGRLWRDRLDPRGAARALAIAQRHQLPEMLARVIAGRGVDIDAVTDFLD 72

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  +T  + AA+RI  A    E + IFGDYDVDGA S AL+   L HC ++
Sbjct: 73  PTIRRLMPDPFTVTQMETAAQRIADAAMRGETVAIFGDYDVDGATSAALLAWHLRHCGLD 132

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   ++     GA L++TVDCG+TS + L  A  +G+ V+VIDHH
Sbjct: 133 PLIHIPDRIFEGYGPNVDAVDALAGRGATLLVTVDCGTTSIEPLAVARQRGMSVVVIDHH 192

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239
           Q   +     ALVNPNR DDLSG GHL A G+VF+ LV + R LRQ           +LL
Sbjct: 193 QCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVFITLVALNRELRQRGFWSRERPEPNLL 252

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
            +L  VAL TV DV PL GLNRA+V KGL+  RR+ + G  AL++   +S P  A +LG+
Sbjct: 253 DMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVARLSGPPEAWHLGF 312

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ L
Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNAERRVIEQTAEAQAEAEAL 372

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  + SVIV   + WHPG+VGL+A+RLK+KF RP+F ++ E  G G GSGRSI G 
Sbjct: 373 ASLGLEDKGSVIVTASEGWHPGVVGLVASRLKDKFARPAFVVALEPGGIGTGSGRSIGGV 432

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+GK V  AV +G+L+KGGGHAMAAG+T+ +        + +      V          I
Sbjct: 433 DLGKAVRRAVTDGVLLKGGGHAMAAGVTLRKEQLAEFRAYMETALAADVARSRHVRKLFI 492

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A A     +  L  AGP+GAGNP PV A P+H+L     +  AHL++ F S D  
Sbjct: 493 DGAVSARAATPEFVATLNRAGPFGAGNPEPVVALPSHQLIHADEIGQAHLRLRFRSGDGA 552

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +  IAFR  G PLG  L + RG+ +HV G L V+ W+G++R QLRV+D +
Sbjct: 553 IVNGIAFRAVGQPLGNALARMRGQPLHVAGSLAVDRWQGAERVQLRVVDVA 603


>gi|294852605|ref|ZP_06793278.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NVSL
           07-0026]
 gi|294821194|gb|EFG38193.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NVSL
           07-0026]
          Length = 594

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 314/590 (53%), Positives = 397/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I  +VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISYLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++  LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLHNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+   +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNVFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|254461162|ref|ZP_05074578.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales
           bacterium HTCC2083]
 gi|206677751|gb|EDZ42238.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 580

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 243/588 (41%), Positives = 340/588 (57%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
            FL VE S++G RWV    +    +  AI Q   +P  +  VL  R V+   A  FL P+
Sbjct: 3   PFLNVERSLTGRRWVGPDLKV-ARQGEAIAQATGLPAPLCNVLAKRGVTPQDADAFLAPT 61

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+P+P  L D +KA  RI+ A+   +KI IF DYDVDG  S AL++ +L H   +A 
Sbjct: 62  LKDLLPNPRSLRDMEKATARILAAVKARQKIAIFADYDVDGGTSAALIIDWLRHFDQSAT 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M         LII VDCG+ S+  +  A   G DV+V+DHH  
Sbjct: 122 LYIPDRIDEGYGPNDEAMAMLAA-AHDLIICVDCGTLSHGPITAAV--GADVVVLDHHLG 178

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                PA+A+VNPNR D+     HLCAAGVVFL+LV   R LR DN      +LL++LDL
Sbjct: 179 GETLPPAHAVVNPNRADETGDLAHLCAAGVVFLMLVEAGRQLRIDN--ATGPNLLNMLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VAL TV DV PLIG+NRA V +GL V  R+   G+ AL +   + +  ++ +LG+++GP 
Sbjct: 237 VALGTVADVAPLIGVNRALVRQGLTVMARRERTGITALADVSRMDTAPSSYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL + D  E + +A +LD+LN  RR +E+ +   A  +   +  D
Sbjct: 297 VNAGGRIGKADLGARLLATRDPHEAKAMAERLDMLNTERREIENNVRAAALEQAEERGFD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                ++   G+ WH G+VG++A+RLK+   RP+  I F+ D    GSGRSI G D+G  
Sbjct: 357 E---PLVWAAGEGWHAGVVGIVASRLKDAAHRPAIVIGFDGDAG-KGSGRSISGVDLGAA 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG++ KGGGH MAAGL++ R           +               ++DG+L 
Sbjct: 413 IQKLAHEGLIEKGGGHKMAAGLSLSRAQLEPAMARLSELMAKQGAGDAGPADLRLDGMLM 472

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  I LI+ LE AGP+GAG P P FAFP+ +L+  + V   HL+++F       + AI
Sbjct: 473 PGAAQIELIEQLEKAGPFGAGAPAPRFAFPDVELKFTKRVGETHLKISFGDGLGARIDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F    TPLG  L +  GKR H+ G L VN W G +  QLR+ DA+P 
Sbjct: 533 CFGAMDTPLGPALEKHGGKRFHLAGRLEVNSWGGRQNPQLRLEDAAPA 580


>gi|192291166|ref|YP_001991771.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris TIE-1]
 gi|192284915|gb|ACF01296.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris TIE-1]
          Length = 613

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 273/593 (46%), Positives = 364/593 (61%), Gaps = 3/593 (0%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGV  S +G  W   L      +A A+ Q++ +P+++ARVL  R V ID  +DFL+P+
Sbjct: 15  AFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLDPT 74

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR LMPDP  LT  +  A+RI  A    EK+ IFGDYDVDGA S AL+   L HC ++  
Sbjct: 75  IRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPL 134

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           ++IPDRI +GYGPN   +     +GA L+ITVDCG+TS + L  A   G+ V+VIDHHQ 
Sbjct: 135 IHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQC 194

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241
             E     AL+NPNR DDLSG GHL A G+V + LV + R LR            +LL +
Sbjct: 195 GDELPDVDALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWTTERPEPNLLDM 254

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           L  VAL TV DV PL+GLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+M+
Sbjct: 255 LHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSRLNGPPEAWHLGFML 314

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR +E     QAEA+ +  
Sbjct: 315 GPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEAMAS 374

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                + +VIV   + WHPG+VGL+A+RLKEKFGRPSFAI+ E  G G GSGRSI G D+
Sbjct: 375 LGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDL 434

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           GK V  AV +G+L+KGGGHAMAAG+T+ +        + +      V          IDG
Sbjct: 435 GKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDG 494

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            ++A  V   L   L  AGP+GAGNP P+ A P H+L     V  AHL++ F++ D   +
Sbjct: 495 AVSARGVTTELAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIV 554

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
             IAFR  G  LG  L ++RG+ +HV G L V+ W+G++R QLRV+D +  + 
Sbjct: 555 NGIAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDA 607


>gi|307946821|ref|ZP_07662156.1| single-stranded-DNA-specific exonuclease RecJ [Roseibium sp.
           TrichSKD4]
 gi|307770485|gb|EFO29711.1| single-stranded-DNA-specific exonuclease RecJ [Roseibium sp.
           TrichSKD4]
          Length = 606

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 282/592 (47%), Positives = 387/592 (65%), Gaps = 3/592 (0%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           +  +  LGV+ S +   W   L ++    A+AI+Q+  +PD++ARV+  R V  + A+ F
Sbjct: 9   IPGRLVLGVQKSFNQNAWRDRLSEDEQRHAMAISQRLGVPDVLARVMAARGVLPESAEAF 68

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L PSI+ LMPDP  L D D A  R+  AI + + I IFGDYDVDGA S A++ R+L    
Sbjct: 69  LAPSIKTLMPDPSNLVDMDSAVSRVADAIQSGKNIAIFGDYDVDGATSSAVLARYLRWTG 128

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           ++  ++IPDRI++GYGPN   +E     GA L++TVDCGSTS+DA + A + G++V+VID
Sbjct: 129 IDPVIHIPDRIIEGYGPNGPALEHLKAGGADLLVTVDCGSTSFDAFEVARSVGLNVVVID 188

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDL 238
           HHQV        ALVNPNR DDLSGQ HL A GV FL +V + R LRQ          DL
Sbjct: 189 HHQVGETLPKVAALVNPNRQDDLSGQEHLAAVGVTFLFVVGLNRELRQRGFFNGKAAPDL 248

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           L+LLDLVAL TVCDVVPL GLNRAYV++GL V  ++ NPGL  L++   +   +   +LG
Sbjct: 249 LALLDLVALGTVCDVVPLKGLNRAYVMRGLEVMHQRRNPGLAFLVDVARVVGKVAPYHLG 308

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +++GP INAGGRIG++ LG+RLL S+D      +A +LD LN  R+ ME+ MLEQA+A+ 
Sbjct: 309 FLLGPRINAGGRIGDAALGARLLTSEDHVTAREIAARLDELNTERQAMEAVMLEQADAQA 368

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
            T   + +  +V++   D WHPGIVGL+A+RLK+   RPSFAI+++E GKG GSGRSI G
Sbjct: 369 -TLAIEAKDPAVLLTGSDDWHPGIVGLIASRLKDAHRRPSFAIAYDETGKGTGSGRSIPG 427

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+GK+V  AV+EG+L KGGGHAMAAGLTV +     L ++F       V     +   K
Sbjct: 428 VDLGKVVRKAVDEGLLEKGGGHAMAAGLTVLKDKVEALTEYFDTHLRADVEQTNASRDLK 487

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           IDG L A+  N+ L++MLE AGPYGAG+  PVF FP H++    VV   H++ +  S D 
Sbjct: 488 IDGALTATGANLDLMNMLEKAGPYGAGHSEPVFVFPTHRVSFADVVGKGHVRASLASSDG 547

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             ++AI+F+    P G+ L++ RG+ +HV G L V+ W+G+ R QLR+LD +
Sbjct: 548 AKIKAISFKAEDKPHGKALLEKRGQSVHVAGSLSVDTWQGTPRVQLRILDVA 599


>gi|256061347|ref|ZP_05451491.1| single-stranded-DNA-specific exonuclease RecJ [Brucella neotomae
           5K33]
 gi|261325349|ref|ZP_05964546.1| single-stranded-DNA-specific exonuclease RecJ [Brucella neotomae
           5K33]
 gi|261301329|gb|EEY04826.1| single-stranded-DNA-specific exonuclease RecJ [Brucella neotomae
           5K33]
          Length = 594

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 316/590 (53%), Positives = 398/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS+  A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVQGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGP P  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QYSIYIPDRIFEGYGPYPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|209885147|ref|YP_002289004.1| single-stranded-DNA-specific exonuclease RecJ [Oligotropha
           carboxidovorans OM5]
 gi|209873343|gb|ACI93139.1| single-stranded-DNA-specific exonuclease RecJ [Oligotropha
           carboxidovorans OM5]
          Length = 613

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 270/602 (44%), Positives = 374/602 (62%), Gaps = 3/602 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
              AFLGV+ S +G  W   L   G  +ALAI Q+H +P+++AR++  R + ID  +DFL
Sbjct: 12  TPHAFLGVKRSATGKLWRDRLDVRGAAQALAIAQRHQLPEMLARIIAGRGIDIDAVEDFL 71

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+IR L+PDP  +T  + AA+R+  A+   E + IFGDYDVDGA S AL+   L HC +
Sbjct: 72  DPTIRKLLPDPSTVTQMEAAAKRLADAVMRGEMVAIFGDYDVDGATSSALLAWHLRHCGL 131

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           +  ++IPDRI +GYGPN   +    + GA+L++TVDCG+TS + L  A   G+DV+VIDH
Sbjct: 132 DPLIHIPDRIFEGYGPNVDAIRMLSSRGAKLLVTVDCGTTSLEPLAEARKLGMDVVVIDH 191

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238
           HQ   E     A+VNPNR DDLSG GHL A G+VF+ LV + R LR  N         +L
Sbjct: 192 HQCNDELPTVNAIVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRVRNFWTAERPEPNL 251

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           L +L  VAL TV DV PL+GLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG
Sbjct: 252 LDMLHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLG 311

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +M+GP INAGGRIG ++LG +LL+  D  E   +A +LD LN  RRL+E A  +QAEA+ 
Sbjct: 312 FMLGPRINAGGRIGRADLGVQLLLEGDVSEAARIAAELDRLNVERRLIEQAAEQQAEAEA 371

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
           L       + +VIV   + WHPG+VGL+A+RLKEKF RP+FA++ E  G G GSGRSI G
Sbjct: 372 LAALGLEDKGAVIVTAAEGWHPGVVGLVASRLKEKFSRPAFAVALEPGGIGTGSGRSIAG 431

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+GK V  AV EG+L+KGGGHAMAAG+T+++        + +      V          
Sbjct: 432 VDLGKAVRGAVSEGLLMKGGGHAMAAGVTLKKDRLAEFRAYLEGVLAEDVARARHLDELF 491

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           +DG ++A AV    +  L  AGP+G GNP P+ A P+H+L     V  AHL++  +S D 
Sbjct: 492 VDGAVSARAVTTDFVATLNRAGPFGTGNPEPMMALPSHQLVYADEVGGAHLRVRLKSGDG 551

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
             +  IAFR  G  LG  L  +RG+ +HV G L ++ W+G++R Q R+ D +  E    A
Sbjct: 552 AFVNGIAFRAVGQKLGNALTDNRGQVVHVAGSLSIDRWQGAERVQFRICDVAVPEREPVA 611

Query: 599 KK 600
            +
Sbjct: 612 IR 613


>gi|62290177|ref|YP_221970.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           1 str. 9-941]
 gi|82700099|ref|YP_414673.1| phosphoesterase [Brucella melitensis biovar Abortus 2308]
 gi|189024412|ref|YP_001935180.1| phosphoesterase, RecJ-like protein [Brucella abortus S19]
 gi|237815686|ref|ZP_04594683.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus
           str. 2308 A]
 gi|254689482|ref|ZP_05152736.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 6 str.
           870]
 gi|254697619|ref|ZP_05159447.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730510|ref|ZP_05189088.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 4 str.
           292]
 gi|256257730|ref|ZP_05463266.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 9 str.
           C68]
 gi|260546721|ref|ZP_05822460.1| phosphoesterase [Brucella abortus NCTC 8038]
 gi|260755005|ref|ZP_05867353.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           6 str. 870]
 gi|260758221|ref|ZP_05870569.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           4 str. 292]
 gi|260762048|ref|ZP_05874391.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260884016|ref|ZP_05895630.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           9 str. C68]
 gi|297248569|ref|ZP_06932287.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           5 str. B3196]
 gi|62196309|gb|AAX74609.1| RecJ, single-stranded-DNA-specific exonuclease RecJ [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616200|emb|CAJ11246.1| Phosphoesterase, RecJ-like:Phosphoesterase, DHHA1:Bacterial RecJ
           exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|189019984|gb|ACD72706.1| Phosphoesterase, RecJ-like protein [Brucella abortus S19]
 gi|237788984|gb|EEP63195.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus
           str. 2308 A]
 gi|260095771|gb|EEW79648.1| phosphoesterase [Brucella abortus NCTC 8038]
 gi|260668539|gb|EEX55479.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           4 str. 292]
 gi|260672480|gb|EEX59301.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260675113|gb|EEX61934.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           6 str. 870]
 gi|260873544|gb|EEX80613.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           9 str. C68]
 gi|297175738|gb|EFH35085.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           5 str. B3196]
          Length = 594

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 316/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W  S   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNASVSPQIQILDAA 591


>gi|316934340|ref|YP_004109322.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris DX-1]
 gi|315602054|gb|ADU44589.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris DX-1]
          Length = 613

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 273/593 (46%), Positives = 365/593 (61%), Gaps = 3/593 (0%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGV  S +G  W   L      +A A+ Q++ +P+++ARVL  R V ID  +DFL+P+
Sbjct: 15  AFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLDPT 74

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR LMPDP  LT  +  A+RI  A    EK+ IFGDYDVDGA S AL+   L HC ++  
Sbjct: 75  IRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPL 134

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           ++IPDRI +GYGPN   +     +GA L+ITVDCG+TS + L  A   G+ V+VIDHHQ 
Sbjct: 135 IHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQC 194

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSL 241
             E     AL+NPNR DDLSG GHL A G+V + LV + R LR            +LL +
Sbjct: 195 GDELPEVEALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWSTERPEPNLLDM 254

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           L  VAL TV DV PLIGLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+M+
Sbjct: 255 LHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGFML 314

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR +E     QAEA+ L  
Sbjct: 315 GPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEALAS 374

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                + +VIV   + WHPG+VGL+A+RLKEKFGRPSFAI+ E  G G GSGRSI G D+
Sbjct: 375 LGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDL 434

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           GK V  AV +G+L+KGGGHAMAAG+T+ +        + +    + V          +DG
Sbjct: 435 GKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLASDVAKSRHVNELYVDG 494

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            ++A  V   L   L  AGP+GAGNP P+ A P H+L     V  +HL++ F++ D   +
Sbjct: 495 AVSARGVTPELAATLNRAGPFGAGNPEPIVALPAHQLVYADEVGQSHLRLRFKAGDGAIV 554

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
             IAFR  G  LG  L ++RG+ +HV G L V+ W+G++R QLRV+D +  + 
Sbjct: 555 NGIAFRSVGQKLGNALAENRGQTLHVAGCLSVDRWQGAERVQLRVIDVAVPDA 607


>gi|254706557|ref|ZP_05168385.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis M163/99/10]
 gi|261314016|ref|ZP_05953213.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis M163/99/10]
 gi|261303042|gb|EEY06539.1| single-stranded-DNA-specific exonuclease RecJ [Brucella
           pinnipedialis M163/99/10]
          Length = 594

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 316/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R  S++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGGSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591


>gi|39935574|ref|NP_947850.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris CGA009]
 gi|39649427|emb|CAE27949.1| putative single-strand DNA-specific exonuclease [Rhodopseudomonas
           palustris CGA009]
          Length = 645

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 273/593 (46%), Positives = 363/593 (61%), Gaps = 3/593 (0%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGV  S +G  W   L      +A A+ Q++ +P+++ARVL  R V ID  +DFL P+
Sbjct: 47  AFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLEPT 106

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR LMPDP  LT  +  A+RI  A    EK+ IFGDYDVDGA S AL+   L HC ++  
Sbjct: 107 IRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPL 166

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           ++IPDRI +GYGPN   +     +GA L+ITVDCG+TS + L  A   G+ V+VIDHHQ 
Sbjct: 167 IHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQC 226

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241
             E     AL+NPNR DDLSG GHL A G+V + LV + R LR            +LL +
Sbjct: 227 GDELPDVDALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWTTERPEPNLLDM 286

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           L  VAL TV DV PL+GLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+M+
Sbjct: 287 LHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSRLNGPPEAWHLGFML 346

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR +E     QAEA+ +  
Sbjct: 347 GPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEAMAS 406

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                + +VIV   + WHPG+VGL+A+RLKEKFGRPSFAI+ E  G G GSGRSI G D+
Sbjct: 407 LGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDL 466

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           GK V  AV +G+L+KGGGHAMAAG+T+ +        + +      V          IDG
Sbjct: 467 GKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDG 526

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            ++A  V   L   L  AGP+GAGNP P+ A P H+L     V  AHL++ F++ D   +
Sbjct: 527 AVSARGVTTDLAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIV 586

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
             IAFR  G  LG  L ++RG+ +HV G L V+ W+G++R QLRV+D +  + 
Sbjct: 587 NGIAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDA 639


>gi|300023047|ref|YP_003755658.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524868|gb|ADJ23337.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 616

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 286/592 (48%), Positives = 374/592 (63%), Gaps = 6/592 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGV  S  GF+W   L  E  + A AI Q H +P+++ R+L  RNV +D    FL+P+
Sbjct: 19  AFLGVRSSARGFQWRERLRPELKSLATAIGQHHGLPEMIGRILAARNVGLDAVPGFLDPT 78

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ LMPDP +L D DKAA R+  AI   +++ IFGDYDVDGA S AL+ RFLSH  V + 
Sbjct: 79  LKSLMPDPSVLRDMDKAAARLADAIEGKQRVAIFGDYDVDGACSSALLHRFLSHHDVPSR 138

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDR+ +GYGPN   +E  +NEGA+LI+TVDCG+TS++ L  A   G DV+V+DHHQ 
Sbjct: 139 IYIPDRLFEGYGPNVGAIETLVNEGAKLIVTVDCGTTSFEPLAAARKLGADVVVVDHHQA 198

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLL 242
                   A+VNPNR DD+SGQG LCAAGVVFLVLV + R LR+          DLL+ L
Sbjct: 199 DERLPDVEAVVNPNRQDDISGQGMLCAAGVVFLVLVAVMRELRRRGFYTSVREPDLLASL 258

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALATV DVVPL+ LNRAYV KGL V R + N GL AL +   +++P T  +LG+++G
Sbjct: 259 DLVALATVADVVPLVALNRAYVKKGLAVMRARENVGLTALADVAGLTTPPTPYHLGFILG 318

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG + LG+ LL + D+ E + +A  L+ LN+ RR +E+ MLE+A A    Q 
Sbjct: 319 PRINAGGRIGNAALGATLLSTSDTVEAQKIAELLNRLNKERRDVEAIMLEEALAIADQQV 378

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEG 418
            D    ++++V  + WH GIVGL+A+RL E+F RP+  I++E       +G GS RSI G
Sbjct: 379 ADDPARAMVIVASETWHKGIVGLVASRLVERFRRPACVIAWEAEASRPNEGTGSLRSIPG 438

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+G  V  AV  G+LVKGGGHAMAAGLTV R N   L   FQ                 
Sbjct: 439 VDLGAAVRAAVSAGLLVKGGGHAMAAGLTVGRNNLAALEAHFQTQLRTATVTANEAAGLD 498

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           ID  L AS     L+DM+E   P+G GNP+P F FP H+++  +VV  AH ++  E  D 
Sbjct: 499 IDAALVASGATTELMDMIERVSPFGQGNPDPRFVFPAHRVKFAKVVGDAHARVLIEGGDG 558

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             L AIAFR  G PLG+ LM   G  +HV GHL  + W G  R +L++ DA+
Sbjct: 559 ARLDAIAFRAAGQPLGDLLMSGGGMPLHVAGHLRRDTWGGRDRVELQIEDAA 610


>gi|330814098|ref|YP_004358337.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487193|gb|AEA81598.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 584

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 225/589 (38%), Positives = 348/589 (59%), Gaps = 11/589 (1%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68
           ++ S+S   W+     E   +    TQ+  + +++ R+L  RNV  D + DFLNP I+  
Sbjct: 2   IKNSVSDRNWILSKFDEN--KVKKATQELGVSEVLCRLLAIRNVEADQSLDFLNPKIKNS 59

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           MP+P +L   D+A + I++ I     I I+GDYDVDGA+S +++ RFL + + N  ++IP
Sbjct: 60  MPNPFLLKSMDEAVKLIIKHIKEESHICIYGDYDVDGASSTSILARFLRNFTNNFFIFIP 119

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           DRI DGYGPN  + E   ++G +LIITVDCG+TS++ ++YA ++ IDV+VIDHHQ     
Sbjct: 120 DRIQDGYGPNLKIFEDIASKGVKLIITVDCGTTSFEPIEYAKSKNIDVVVIDHHQSTETL 179

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDL 244
             A A+VNPNR D+ S   +LCAAGV FLVL  I   LR+++          +LL+ LDL
Sbjct: 180 PIANAIVNPNRFDETSNLTYLCAAGVAFLVLSGIVTRLREEDFFKKKNIQEPNLLNYLDL 239

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VAL TVCDVVPL GLNRA+V +GL V +++ N G+K L +  NI+S I+  +LGY+IGP 
Sbjct: 240 VALGTVCDVVPLQGLNRAFVFQGLKVLQKRNNLGIKTLSDVANINSKISTYHLGYIIGPK 299

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG+++ G+ LL+++D +    ++ +L+ LN+ R+ +E  +LE+A      +   
Sbjct: 300 INAGGRIGKADHGANLLLTEDPEIAFKISKELNQLNEKRKNIEGIILEEAINIAKHK--- 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                V+VV  + WH GI+G++A+RLK+ F +P+F I+  E   G GS RS+ GFDIG  
Sbjct: 357 -DNNPVLVVSSNTWHEGIIGIIASRLKDHFNKPTFVIN-FEGDYGKGSARSLPGFDIGSA 414

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           V  A +  I+ KGGGH MAAG ++ +        F     +             ID VL 
Sbjct: 415 VVKAKQSEIITKGGGHKMAAGFSINQDKADEFEIFLIDLFNKSGCQSSKEKDLYIDSVLA 474

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
           +SAVN    + ++   P+G+ N  P F   N  +    ++  +H++   ++ ++  +  I
Sbjct: 475 SSAVNEKFFNEIDKLAPFGSANREPRFVIENVSITKSLILKESHIKAFCKTSNNSKINLI 534

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           +F    TP+G +L+ ++ K+  + G L +N W G +  Q  + D +   
Sbjct: 535 SFNSVNTPIGSYLLNAKNKKYDIAGRLSLNEWNGKREVQFLLDDLAIST 583


>gi|254466495|ref|ZP_05079906.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales
           bacterium Y4I]
 gi|206687403|gb|EDZ47885.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales
           bacterium Y4I]
          Length = 580

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 242/588 (41%), Positives = 344/588 (58%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S+SG RWV   G E    +  + Q+  +P  V +VL  R V    AK FL P 
Sbjct: 3   SFLGVEQSLSGRRWVG-PGVEVDRASEMMAQQTGLPRSVCQVLARRGVPAMEAKGFLEPK 61

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R +QA+   ++I +F DYDVDG +S AL++ +L    + A 
Sbjct: 62  LKELLPDPREMKDMEAAAARFLQAVQRKQRIAVFADYDVDGGSSAALLLVWLRQMGLEAT 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M++       LII VDCG+ S++ +  A  +G DVIV+DHH  
Sbjct: 122 LYIPDRIDEGYGPNVPAMQELAA-AHDLIICVDCGTLSHEPI--AAAKGADVIVLDHHLG 178

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV   R +R+        DL++LLDL
Sbjct: 179 GETLPDCVAVVNPNRQDESGDLGYFCAAGVVFLMLVEAGRQMREAG--AKGPDLMALLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG NRA V +GL V   +  PGL AL +   + S  +  +LG+++GP 
Sbjct: 237 VALATVADVAPLIGANRALVRQGLKVMAARKRPGLVALSDVSRMDSAPSTYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +D+  E   LA +LD LN  RR +E+A+   A  +   +  +
Sbjct: 297 VNAGGRIGKADLGARLLSTDNPHEAAALAERLDQLNTERRDIENAVRAAALDQAEARGLE 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I F+ + +G GSGRS+ G D+G  
Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAVVIGFDGE-EGKGSGRSVSGVDLGAS 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+LVKGGGH MAAGLTV R       +   +               K+DG L 
Sbjct: 413 IQRLAAEGLLVKGGGHKMAAGLTVMRDKLEPAMERLSELLAKQGAGQGGPADLKLDGALM 472

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI  +E AGP+GAG P P +A P+ +++  + V  +HL+++        + AI
Sbjct: 473 PGAATVELIGQIEQAGPFGAGAPAPRYALPDLQVRFAKKVGESHLKLSLSDGMGGGVDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F  + T LG  L++  G R H  G L +N W G +  QLR+ DA+  
Sbjct: 533 CFGAFDTALGPRLLEHGGARFHFAGRLEINTWGGRQSPQLRLEDAAEA 580


>gi|90424310|ref|YP_532680.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris BisB18]
 gi|90106324|gb|ABD88361.1| exonuclease RecJ [Rhodopseudomonas palustris BisB18]
          Length = 613

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 278/590 (47%), Positives = 371/590 (62%), Gaps = 3/590 (0%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGV  S +G  W   L   G  RALAI Q++ +P+++ARVL  RNV ID  +DFL+P+
Sbjct: 15  AFLGVARSATGRVWRDRLDPRGAARALAIAQRYQLPEMLARVLAGRNVEIDAVEDFLDPT 74

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR L+PDP  +T  + AA+R+  A+  +E + IFGDYDVDGA S AL+   L HC ++  
Sbjct: 75  IRRLLPDPYSVTQMEAAAKRLADAVLGAETVAIFGDYDVDGATSAALLAWHLRHCGLDPL 134

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           ++IPDRI +GYGPN   +    + GA L+ITVDCG+TS + L  A   G+ V+VIDHHQ 
Sbjct: 135 IHIPDRIFEGYGPNVDAVRMLASRGATLLITVDCGTTSLEPLAEAKRLGMSVVVIDHHQC 194

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241
             E     ALVNPNR DDLSG GHL A G+VF+ LV + R LR            +LL++
Sbjct: 195 GDELPVVDALVNPNRPDDLSGLGHLAAVGLVFVTLVALNRELRARGFWTLERPQPELLNM 254

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           L  VAL TV DV PL GLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+++
Sbjct: 255 LHHVALGTVADVAPLTGLNRAFVAKGLIAMRRRDHVGHTALMDIARLNGPPDAFHLGFLL 314

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ L  
Sbjct: 315 GPRINAGGRIGRADLGVRLLLESDISEAAKIAAELDRLNAERRVIEQMAEAQAEAEALAA 374

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                + SVIV   + WHPG+VGL+A+RLKEKF RP+FAI+ E  G G GSGRSI G D+
Sbjct: 375 LGFEDKGSVIVTASEGWHPGVVGLVASRLKEKFSRPAFAIALEPGGIGTGSGRSIPGVDL 434

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           GK V  AV +G+L+KGGGHAMAAG+T+ +        + +      V          IDG
Sbjct: 435 GKAVRQAVSDGLLLKGGGHAMAAGVTLRKEKLAEFRAYIEAALAADVARSRHANELFIDG 494

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            ++A AV   L+  L  AGP+G+GNP PV A P+H+L     V  AHL++ F+S D   +
Sbjct: 495 AVSARAVTPDLVATLNRAGPFGSGNPEPVLALPSHQLVYADEVGQAHLRLRFKSGDGAIV 554

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
             IAFR  G  LG  L ++RG+ +HV G L V+ W+G++R QLRV D + 
Sbjct: 555 NGIAFRSVGQKLGNALQENRGQPLHVAGCLTVDRWQGNERVQLRVTDVAV 604


>gi|150396665|ref|YP_001327132.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium
           medicae WSM419]
 gi|150028180|gb|ABR60297.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium
           medicae WSM419]
          Length = 600

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 333/590 (56%), Positives = 435/590 (73%), Gaps = 1/590 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S+SG RWVS L Q G NRALAI+Q H   +++ARVL  R V +D A  FL+P
Sbjct: 10  RAFLGVERSVSGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGLDDAGAFLDP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R LMPDP ILTDC KAA R+  AI   EKI++FGDYDVDGAAS ALM+RFL H  +  
Sbjct: 70  TLRALMPDPDILTDCRKAAERLADAIRRREKIVVFGDYDVDGAASAALMVRFLRHFDLTT 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP  +E+ I+ GA+LI+TVDCGSTS+++   A  +G DV+V+DHHQ
Sbjct: 130 EIYIPDRIFEGYGPNPQAIEQLIDRGAELIVTVDCGSTSHESFAVAAERGTDVVVVDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242
           V S   P +ALVNPNR DDLSGQGHLCAAGVV+LVLV   R+LR        +FDLLSLL
Sbjct: 190 VGSTLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLKGDSRVASFDLLSLL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLV+LATVCDVVPL GLNRAYVVKGL+ AR  GN GL AL+ +  I  P+T  +LG+++G
Sbjct: 250 DLVSLATVCDVVPLKGLNRAYVVKGLIAARHMGNAGLAALLRKAAIGGPVTPYHLGFLLG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD+ E E++A +LD LN++R+ ME+AML +AEA+VL + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAAEAEIIAGQLDELNRDRQAMEAAMLAEAEAEVLAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
              + ASVI+   + WHPGIVGL+AAR+KEKF RP+FAI+F+ +G+G GSGRSI GFD+G
Sbjct: 370 GTGEGASVIITARENWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           ++V  AV+ G+L+KGGGHAMAAGLTVER   G+L  FF++ A   V  L+     K+DG 
Sbjct: 430 RLVRAAVDSGLLIKGGGHAMAAGLTVERGKLGQLRQFFEERAETAVRDLVAVQTLKVDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + A+   + L+D+L+ AGPYG+G+P P+FAFP H+L+  R V   H+++T E QD   ++
Sbjct: 490 MAAAGATLDLVDLLDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGRRIE 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAFR   TPLG FL+ +RG  +H  G +  + W+G+++ QLR+ DA+  
Sbjct: 550 GIAFRATETPLGAFLLGNRGATVHAAGSVSADLWQGTRKVQLRLTDAAKA 599


>gi|254693969|ref|ZP_05155797.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214260|ref|ZP_05928541.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           3 str. Tulya]
 gi|260915867|gb|EEX82728.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv.
           3 str. Tulya]
          Length = 594

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 315/590 (53%), Positives = 398/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLGV+ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  L D D AA RI  AI   E + IF DYDVDGA S ALM RFL H  V
Sbjct: 63  DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFSDYDVDGACSSALMARFLKHYGV 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+
Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  AVE+G+LVKGGGHAMAAG+T+ER N G L  + ++ A +IV  L       ID
Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   +AL + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G  +HV G+L +N+W  S   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNASVSPQIQILDAA 591


>gi|153009250|ref|YP_001370465.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561138|gb|ABS14636.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum
           anthropi ATCC 49188]
          Length = 594

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 311/590 (52%), Positives = 401/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLG++ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGIKQSATGQKWVDRLGLREANTALAIAQHHGISDLVARVLAGRGVSVENAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  LTD + AA RI  AI   E + IFGDYDVDGA S ALM RFL H  +
Sbjct: 63  DPTLRNLMPDPATLTDMENAASRIADAILRRETVAIFGDYDVDGACSSALMARFLKHYGI 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M   + +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRDLVAKGATLIVTVDCGTNSASSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR+  K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVTKILRERGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           LLDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+   +LGY+
Sbjct: 242 LLDLVALATVCDVVPLTGVNRAFVVKGLVVARSQSNVGLAALARVARIGEPLNVFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DDS   + +A++LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDSATADRIAVELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSIMGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  A+E G+LVKGGGHAMAAG+T+ER N G L  + ++ + +IV  L       ID
Sbjct: 422 LGKLVRGAMERGLLVKGGGHAMAAGITIERANLGALRAYLEEESAHIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   ++L + L+ AGPYG+ +P P+ A P+H L  +R V   H+++     D + 
Sbjct: 482 GALAASGATVSLYEALQKAGPYGSAHPQPILALPHHILADVRGVGRDHVRVALRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G+ +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGQSVHVAGNLSLNHWNGSVTPQIQILDAA 591


>gi|84515364|ref|ZP_01002726.1| probable single-stranded DNA-specific exonuclease [Loktanella
           vestfoldensis SKA53]
 gi|84510647|gb|EAQ07102.1| probable single-stranded DNA-specific exonuclease [Loktanella
           vestfoldensis SKA53]
          Length = 586

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 255/590 (43%), Positives = 349/590 (59%), Gaps = 10/590 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           D AFLGV  S++G RWV    QE    A A+ Q   +P  + R L  R V    A  FL 
Sbjct: 6   DHAFLGVAASLTGRRWVGPNAQED-RAAEAMVQATNLPPALCRTLARRGVPSQEAALFLA 64

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R L+PDP  L D +KAA R +QA+   E+I +F DYDVDG AS AL++ +L    + 
Sbjct: 65  PTLRDLLPDPRSLRDMEKAATRFLQAVAGRERIAVFADYDVDGGASAALLIVWLRQRGLR 124

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           A +YIPDRI +GYGPN   M +       LII VDCG+ S+  +  A     DVIV+DHH
Sbjct: 125 ATLYIPDRIDEGYGPNEPAMAELAA-AHDLIICVDCGTLSHGPIAAAVRA--DVIVLDHH 181

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
                   AYA+VNPNR D+     HLCAAGVVFL+LV   R LR         DL+++L
Sbjct: 182 LGGETLPAAYAVVNPNRQDESGDLAHLCAAGVVFLMLVEANRQLRDAG--KAGPDLMAML 239

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALATV DV PL+G+NRA+V +GL+V  R+   GL AL +   + +  TA +LG+++G
Sbjct: 240 DLVALATVADVAPLVGVNRAFVRQGLVVMARRARVGLTALADVSGLDAAPTAYHLGFLLG 299

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +NAGGRIG+++LG+RLL SDD  E   LA  LD LN +RR +E A+ + A A+ L + 
Sbjct: 300 PRVNAGGRIGKADLGARLLASDDPAEARDLADMLDQLNTDRRAVEQAVRDVAIAQALARG 359

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D     ++   G+ WHPG+VG++AARLKE   RP+  I   EDG G GSGRS+ G D+G
Sbjct: 360 TDG---PLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIGL-EDGIGKGSGRSVSGIDLG 415

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             +     EG+L+KGGGH MAAGL+V +           +       + +     ++DG+
Sbjct: 416 AAIQRLASEGLLLKGGGHKMAAGLSVAQDRLEPAMARLAELLDKQGASALGPADLRLDGI 475

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L   A  + L+ +L+ AGP+GAG P P FAFP+ ++   + V   HL+++F       + 
Sbjct: 476 LMPGAATVDLVTLLDDAGPFGAGAPAPRFAFPDCQILFAKQVGETHLKISFGDGLGARID 535

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AI F     PLG  L+Q  G R H+ G + VN W+G +  QLR+ DA+P 
Sbjct: 536 AICFGAMDGPLGPALLQHNGTRFHLAGRIEVNVWQGRQSVQLRLEDAAPA 585


>gi|85717365|ref|ZP_01048317.1| RecJ exonuclease [Nitrobacter sp. Nb-311A]
 gi|85695840|gb|EAQ33746.1| RecJ exonuclease [Nitrobacter sp. Nb-311A]
          Length = 613

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 276/592 (46%), Positives = 368/592 (62%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
             AFLGV  S +G  W   L Q G  RALAI Q+H +P+++ARV+  R V ID   DFL+
Sbjct: 13  PDAFLGVSHSATGRLWRDRLDQRGAARALAIAQRHQLPEMLARVIAGRGVEIDAIADFLD 72

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  +T  + AA+R+  A    E + IFGDYDVDGA S AL+   L HC ++
Sbjct: 73  PTIRRLMPDPSTVTQMETAAKRLADAAMRGETVAIFGDYDVDGATSAALLAWHLRHCGLD 132

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   ++   + GA L++TVDCG+TS + L  A  +G+ V+VIDHH
Sbjct: 133 PLIHIPDRIFEGYGPNVDAIDALADRGATLLVTVDCGTTSIEPLSVARQRGMSVVVIDHH 192

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239
           Q   +     ALVNPNR DDLSG GHL A G+V + LV + R LR+           +LL
Sbjct: 193 QCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVLVTLVALNRELRKRGFWSSERPEPNLL 252

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
            +L  VAL TV DV PL GLNRA+V KGL+  RR+ + G  AL++   +S P  A +LG+
Sbjct: 253 DMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVARLSGPPEAWHLGF 312

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E A   QAEA+ L
Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNAERRVIEQAAEAQAEAEAL 372

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  + SVIV   + WHPG+VGL+A+RLK+KF RP+F ++ E  G G GSGRSI G 
Sbjct: 373 ASLGLEDKGSVIVTASEGWHPGVVGLVASRLKDKFSRPAFVVALEPGGIGTGSGRSIGGV 432

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+GK V  AV +G+L+KGGGHAMAAG+T+ +        + +      V          I
Sbjct: 433 DLGKAVRRAVTDGVLLKGGGHAMAAGVTLRKEQLAEFRAYMENTLAADVARSRHVRELFI 492

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A       + ML  AGP+GAGNP P+ A P+H+L     V  AHL++ F+S D  
Sbjct: 493 DGAVSARTATPEFVTMLNRAGPFGAGNPEPMVALPSHQLIHADEVGQAHLRLRFKSGDGA 552

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            +  IAFR  G PLG  L Q RG+ +HV G L V+ W+G++R QLRV+D + 
Sbjct: 553 IVNGIAFRAVGQPLGNALAQMRGQPLHVAGSLAVDRWQGAERVQLRVVDVAV 604


>gi|86750079|ref|YP_486575.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris HaA2]
 gi|86573107|gb|ABD07664.1| exonuclease RecJ [Rhodopseudomonas palustris HaA2]
          Length = 613

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 270/591 (45%), Positives = 361/591 (61%), Gaps = 3/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
            AFLGV  S +G  W   L   G  +A AI Q++ +P+++ARV+  R + ID   DFL+P
Sbjct: 14  SAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGRGIEIDAVADFLDP 73

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP  +T  +  A RI  A    EK+ IFGDYDVDGA S AL+   L HC ++ 
Sbjct: 74  TIRKLMPDPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAALLAWHLRHCGLDP 133

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            ++IPDRI +GYGPN   +    ++GA L+ITVDCG+TS + L  A   G+ V+VIDHHQ
Sbjct: 134 LIHIPDRIFEGYGPNVDAIRMLADKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQ 193

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLS 240
              E     AL+NPNR DDLSG GHL A G+V + LV + R LR            +LL 
Sbjct: 194 TADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRGFWTLERPEPNLLD 253

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +L  VAL TV DV PLIGLNRA+V KGL+  RR+ + G  AL++   ++ P    +LG+M
Sbjct: 254 MLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEVWHLGFM 313

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ + 
Sbjct: 314 LGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQHAEAQAEAEAIA 373

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                 + +VIV   + WHPG+VGL+A+RLKEKFGRP+FAI+ E  G G GSGRSI G D
Sbjct: 374 ALGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVD 433

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G+ V  AV EGIL+KGGGHAMAAG+T+ +        + +      V          ID
Sbjct: 434 LGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAADVAKSRHVNELSID 493

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G ++A  +       L  AGP+GAGNP PV A P H+L     V  AHL++ F+S D   
Sbjct: 494 GAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQAHLRLRFKSGDGAI 553

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +  IAFR  G  LG+ L ++RG  +HV G L ++ W+G++R Q RV+D + 
Sbjct: 554 VNGIAFRSVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVIDVAV 604


>gi|209964606|ref|YP_002297521.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Rhodospirillum centenum SW]
 gi|209958072|gb|ACI98708.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Rhodospirillum centenum SW]
          Length = 601

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 249/595 (41%), Positives = 348/595 (58%), Gaps = 10/595 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           + AFLGV  S++G RW +    E    AL   Q   +P+IV R+L  R V++D   DFL 
Sbjct: 8   ESAFLGVHSSVTGRRWRARPVDE--RLALTFAQSRGLPEIVGRLLAARGVTLDAVDDFLA 65

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           PS+R  +PDP +L D D AA RI  A+   E I +FGDYDVDGA S AL+ RFL    V 
Sbjct: 66  PSLRTQLPDPSVLRDMDAAAGRIAHAVRTGEGIAVFGDYDVDGATSSALLARFLRALGVE 125

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   + +  ++G +L++TVDCG+T++D L  A   G+DV+V+DHH
Sbjct: 126 PRIHIPDRIAEGYGPNLPALLRLRDQGVRLVVTVDCGTTAFDVLDGAAEAGLDVVVVDHH 185

Query: 183 QVKSEEIPAYALVNPNRLDDLS--GQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDL 238
           + +       ALVNPNRLD+      G L A GV FL++V + R LR+D          L
Sbjct: 186 KAEPRLPRTVALVNPNRLDEPPGGPLGTLAAVGVTFLLVVAVNRALRRDGFYSGRAEPAL 245

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           L  LDLVAL TVCDVVPL GLNR +V +GL VA R+ NPG++AL +   ++      + G
Sbjct: 246 LDWLDLVALGTVCDVVPLTGLNRVFVAQGLKVAGRRANPGIRALADVAGVTDRFDTYHAG 305

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +++GP +NAGGR+G S+LGSR+L +DD  E   LA +L  LN  RR +E+ +LE+A A V
Sbjct: 306 FIVGPRVNAGGRVGRSDLGSRILSTDDPAEALELARQLHDLNAERRELEAVVLEEALALV 365

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
             +        +++  G+ WHPG++G++A+RLKE+F RP+  ++  E G G  SGRS+ G
Sbjct: 366 --EGVAGDSPELVLAAGEGWHPGVIGIVASRLKERFNRPACVVA-LEGGLGKASGRSVRG 422

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITTPVF 477
            D+G  V  A + G+L+ GGGHAMAAG TVE      L  F ++     +       P  
Sbjct: 423 VDLGAAVIAARQAGLLLAGGGHAMAAGFTVEAARLDDLRAFLRERIGAQLAEAGPLVPTL 482

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
            +DG +        L+  LE   PYG GNP P FA  + ++    VV   H++      D
Sbjct: 483 SLDGAIAVRGAGTDLLQHLERLAPYGTGNPEPRFAVTDARIVRADVVGANHVRCILTGPD 542

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              L+ IAFR     LGE L++S G  +H+ G L  + W G +  QL + DA+P 
Sbjct: 543 GARLKGIAFRALDGALGEALLRSGGMPLHLAGTLRADRWNGQEGVQLFIDDAAPA 597


>gi|99082006|ref|YP_614160.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. TM1040]
 gi|99038286|gb|ABF64898.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. TM1040]
          Length = 603

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 242/588 (41%), Positives = 347/588 (59%), Gaps = 9/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G RWV   G +    +  + Q+  +P  V +VL  R V    A  FL P 
Sbjct: 25  SFLGVETSLTGRRWVG-PGVDQARASEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQ 83

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R +QA+   E+I IF DYDVDG +S AL++ +L      A 
Sbjct: 84  LKDLLPDPRRMKDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQQAT 143

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN + M     +   LII VDCG+ S+  +  A  +G DV+V+DHH  
Sbjct: 144 LYIPDRIDEGYGPNDAAMAALARDH-DLIICVDCGTLSHGPI--AAAKGADVVVLDHHLG 200

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV + R  R    +    DL+++LDL
Sbjct: 201 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQARDKG-LGAGPDLMAMLDL 259

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG NRA V +GL V  R+  PGL AL +   + +  +  +LG+++GP 
Sbjct: 260 VALATVADVAPLIGANRALVRQGLKVMGRRQRPGLVALADVSRMDAAPSTYHLGFLLGPR 319

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +DD  E   L+ +LD LN  RR +E+A+   A  +   +  D
Sbjct: 320 VNAGGRIGKADLGARLLSTDDPHEAAALSERLDQLNTERRDIENAVRAAALEQAEARGFD 379

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I  + + +G GSGRS+ G D+G  
Sbjct: 380 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLDGE-EGKGSGRSVSGIDLGAS 435

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV R           +         +     K+DG+L 
Sbjct: 436 IQKVAMEGLLLKGGGHKMAAGLTVARGQLEPAMARLAELLDKQGAGDLGPADLKLDGMLM 495

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A ++ LI+ +E AGP+GAG P P + FP+  ++  + V  +HL+++F       + AI
Sbjct: 496 PGAASVELIEQIEQAGPFGAGAPAPRYGFPDVAVRFAKRVGESHLKVSFTDGMGGNIDAI 555

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF  + T LG  L++  G R HV+G L VN W G +  QLR+ DA+  
Sbjct: 556 AFGAFDTNLGPRLLEHGGARFHVSGRLEVNTWGGRQSAQLRLEDAAEA 603


>gi|91976971|ref|YP_569630.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris BisB5]
 gi|91683427|gb|ABE39729.1| exonuclease RecJ [Rhodopseudomonas palustris BisB5]
          Length = 633

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 271/591 (45%), Positives = 362/591 (61%), Gaps = 3/591 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
            AFLGV  S +G  W   L   G  +A AI Q++ +P+++ARV+  R V ID   DFL+P
Sbjct: 34  SAFLGVTRSATGKLWRDRLDPRGTAKAQAIAQRYQLPEMLARVIAGRGVEIDAVPDFLDP 93

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR LMPDP  +T  +  A+RI  A    E + IFGDYDVDGA S AL+   L HC ++ 
Sbjct: 94  TIRKLMPDPSSVTQMEAGAQRIADAAMKRETVAIFGDYDVDGATSAALLTWHLRHCGLDP 153

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            ++IPDRI +GYGPN   +     +GA L+ITVDCG+TS + L  A   G+ V+VIDHHQ
Sbjct: 154 LIHIPDRIFEGYGPNVDAIRGLSEKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQ 213

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLS 240
              E     AL+NPNR DDLSG GHL A G+V + LV + R LR            +LL 
Sbjct: 214 CGDELPEVEALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRGFWTVELPEPNLLD 273

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +L  VAL TV DV PLIGLNRA+V KGL+  RR+ + G  AL++   ++ P    +LG+M
Sbjct: 274 MLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPDVFHLGFM 333

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ + 
Sbjct: 334 LGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQMAEAQAEAEAMA 393

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                 + +VIV   + WHPG+VGL+A+RLKEKFGRP+FAI+ E  G G GSGRSI G D
Sbjct: 394 SLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVD 453

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G+ V  AV EG+L+KGGGHAMAAG+T+ +        + +      V          ID
Sbjct: 454 LGRAVRRAVSEGLLMKGGGHAMAAGVTLRKERLAEFRGWLETALAADVAKSRHINELLID 513

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G ++A  V       L  AGP+GAGNP PV A P H+L     V  AHL++ F+S D   
Sbjct: 514 GAVSARGVTTEFAATLNRAGPFGAGNPEPVIALPAHQLIYADEVGQAHLRLRFKSGDGAI 573

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +  IAFR  G  LG+ L ++RG+ +HV G L ++ W+G++R QLRV+D + 
Sbjct: 574 VNGIAFRSVGQKLGQALTENRGQSLHVAGSLSIDRWQGAERVQLRVIDVAV 624


>gi|239832155|ref|ZP_04680484.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum
           intermedium LMG 3301]
 gi|239824422|gb|EEQ95990.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum
           intermedium LMG 3301]
          Length = 594

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 311/590 (52%), Positives = 401/590 (67%), Gaps = 2/590 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++ FLG++ S +G +WV  LG    N ALAI Q H I D+VARVL  R VS++ A +F+
Sbjct: 3   TERFFLGIKQSATGQKWVDRLGLREANTALAIAQHHGITDLVARVLAGRGVSVEGAPEFV 62

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R LMPDP  LTD D AA RI  AI   E + IFGDYDVDGA S ALM RFL H  +
Sbjct: 63  DPTLRNLMPDPATLTDMDNAAGRIADAILRRETVAIFGDYDVDGACSSALMSRFLKHYGI 122

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             ++YIPDRI +GYGPNP  M   + +GA LI+TVDCG+ S  ++  A   G DV+V+DH
Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRDLVAKGATLIVTVDCGTNSAPSITAAKQAGADVVVLDH 182

Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HQV       A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR+  K P   DLLS
Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISLQGHLCAAGVVFLTLVQVTKILRERGKGP-GPDLLS 241

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           LLDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL     I  P+   +LGY+
Sbjct: 242 LLDLVALATVCDVVPLTGVNRAFVVKGLLVARSQSNVGLAALARVSRIGEPLNVFHLGYL 301

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL  DD    + +A++LD LNQ R+ ME+ ML +AEA+   
Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPATADRIAVELDRLNQERQAMEAEMLMEAEAEASL 361

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +      ASVIV   DRWHPGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D
Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSIMGLD 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK+V  A++ G+LVKGGGHAMAAG+T+ER N G L  + ++ + +IV  L       ID
Sbjct: 422 LGKLVRGAMDRGLLVKGGGHAMAAGITIERGNLGALRAYLEEESAHIVSRLRENQSLSID 481

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L AS   ++L + L+ AGPYG+ +P P+ A P+H L  +R V   H+++T    D + 
Sbjct: 482 GALAASGATVSLYEALQKAGPYGSAHPQPILALPHHILADVRGVGRDHVRVTLRGADGKR 541

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR     LG FL  + G+ +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGQSVHVAGNLSLNHWNGSVTPQIQILDAA 591


>gi|259416462|ref|ZP_05740382.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter sp.
           TrichCH4B]
 gi|259347901|gb|EEW59678.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter sp.
           TrichCH4B]
          Length = 580

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 240/585 (41%), Positives = 340/585 (58%), Gaps = 9/585 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G  W+   G E       + Q+  +P  V +VL  R V    A  FL P 
Sbjct: 2   SFLGVETSLTGRSWIG-PGVEQARAGEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQ 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R +QA+   E+I IF DYDVDG +S AL++ +L      A 
Sbjct: 61  LKELLPDPRRMKDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQQAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M     +   LI+ VDCG+ S+  +  A  +G DV+V+DHH  
Sbjct: 121 LYIPDRIDEGYGPNDEAMAALARDH-DLIVCVDCGTLSHGPI--AAAKGADVVVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV + R  R+   +    DL+++LDL
Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQAREKG-LGAGPDLMAMLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG NRA V +GL V  R+   GL AL +   + S  +  +LG+++GP 
Sbjct: 237 VALATVADVAPLIGANRALVRQGLKVMGRRQRAGLVALADVSRMDSAPSTYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +D+  E   LA +LD LN  RR +E+A+   A  +   +  D
Sbjct: 297 VNAGGRIGKADLGARLLSTDNPHEAAALAERLDQLNTERRDIENAVRAAALEQAEERGFD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I   +  +G GSGRS+ G D+G  
Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGL-DGDEGKGSGRSVSGIDLGAS 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV R           +         +     K+DG+L 
Sbjct: 413 IQKVAMEGLLLKGGGHKMAAGLTVARDQLEPAMARLAELLDKQGAGDLGPADLKLDGMLM 472

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI+ +E AGP+GAG P P + FP+  ++  + V  +HL+++F       + AI
Sbjct: 473 PGAATVELIEQIEQAGPFGAGAPAPRYGFPDLAVRFAKRVGESHLKVSFTDGMGGNIDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AF  + T LG  L++  G R HV G L VN W G +  QLR+ DA
Sbjct: 533 AFGAFDTNLGPRLLEHGGARFHVAGRLEVNTWGGRQSAQLRLEDA 577


>gi|114764216|ref|ZP_01443454.1| single-stranded-DNA-specific exonuclease RecJ [Pelagibaca
           bermudensis HTCC2601]
 gi|114543368|gb|EAU46384.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp.
           HTCC2601]
          Length = 581

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 246/590 (41%), Positives = 349/590 (59%), Gaps = 10/590 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           ++LGVE S++G RWV   G E   +A A+ Q+  +P  + +VL    V       +L P+
Sbjct: 2   SYLGVEASLTGRRWVG-PGVEQERQAEALAQQSNLPRGLCQVLARLGVEAPEVAGYLAPT 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D + AA R++ A+   E+I +F DYDVDG  S AL++ +L    + A 
Sbjct: 61  LRDLLPDPRSLRDMETAATRVLAAVKRRERIAVFADYDVDGGTSAALLLDWLHQLGLGAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   MEK  + G  LII VDCG+ S+  +  A  +G DV+V+DHH  
Sbjct: 121 LYIPDRIDEGYGPNEPAMEKLAS-GHDLIICVDCGTLSHGPI--AAAKGADVVVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+     HLCAA VVFL+LV   R +R+  +     DL+++LDL
Sbjct: 178 GETLPDCVAVVNPNRQDEDGALAHLCAAAVVFLMLVECGRQMREAGQ--RGPDLMAMLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL G+NRA V +GL V  R+  PGL AL +   + +  ++ +LGY++GP 
Sbjct: 236 VALATVADVAPLKGVNRALVRQGLAVMARRARPGLVALSDVARLDTAPSSYHLGYVLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG++++G+RLL S D  E E LA +LD LN  RR +E A+   A A+   +  D
Sbjct: 296 VNAGGRIGQADIGARLLASRDRHESEALAARLDQLNTERREVEEAVRAAALAQAEARGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE   RP+  I   +  +G GSGRS+ G D+G  
Sbjct: 356 ---APLVWAAGEGWHPGVVGIVASRLKELTNRPAVVIGL-DGDEGKGSGRSVSGVDLGAS 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     +G+L+KGGGH MAAGLTV R       +   +               K+DG+L 
Sbjct: 412 IQRLAADGLLLKGGGHKMAAGLTVARDGLEAAMERLSELLAKQGAGQGGAADLKLDGLLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A NI L + +E AGP+GAG P P FA P+ ++   + V   HL+++F       + AI
Sbjct: 472 PGAANIELCEQMEQAGPFGAGAPAPRFAMPDVQVGFAKQVGSGHLKVSFGDGLGAKIDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            F  +  PLG+ L   RG+R HV G L +N W G +  Q+R+ DA+P EG
Sbjct: 532 CFGAFDGPLGQALCDHRGRRFHVAGRLEINEWNGRRSVQMRLEDAAPAEG 581


>gi|114704297|ref|ZP_01437205.1| single-stranded-DNA-specific exonuclease protein [Fulvimarina
           pelagi HTCC2506]
 gi|114539082|gb|EAU42202.1| single-stranded-DNA-specific exonuclease protein [Fulvimarina
           pelagi HTCC2506]
          Length = 612

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 285/589 (48%), Positives = 375/589 (63%), Gaps = 2/589 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
             QAFLGVE S+SG RW + L   G   ALA++QK  I +IVARVL  R V  + A  FL
Sbjct: 22  TGQAFLGVERSLSGRRWRAALDARGEGLALAMSQKQGIDEIVARVLAARGVPGEEAHRFL 81

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP +LTD D AA RI  AI   E++ IFGDYDVDGA+S ALM R+L H  +
Sbjct: 82  APRLRDLMPDPSVLTDMDAAADRIASAIQKRERVAIFGDYDVDGASSSALMWRYLDHFGI 141

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
            A +YIPDR+ +GYGP+   M +  +  A LIITVDCG+ S+D ++ A   G DV+V+DH
Sbjct: 142 GARIYIPDRVTEGYGPSVVAMRELAS-EASLIITVDCGTASFDPIEAAKAAGADVVVLDH 200

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241
           HQ   +   A ALVNPNR DD++G GHLCAAGVVF+ LV I R LR+        D+L  
Sbjct: 201 HQTGPDIPSATALVNPNRQDDVAGLGHLCAAGVVFMTLVAINRALRKRG-YSDLPDILCW 259

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LD+VALATVCDVVPL GLNRA+VV+GL V R   N GL AL     +S PI   +LG+++
Sbjct: 260 LDIVALATVCDVVPLTGLNRAFVVQGLKVMRTMKNVGLAALTRIARLSGPIEPHHLGFLL 319

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LGSRLL   D  E E LA +LD LNQ R+ ME  ML  AE  +L +
Sbjct: 320 GPRINAGGRIGDAALGSRLLCLTDGAEAEALAARLDGLNQERQAMEQVMLRDAEEAILRE 379

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
               +   V+V     WH GIVGL+AARLKE+F RP+FAI+F+  GKG GSGRSI G D+
Sbjct: 380 IGTGEGPPVLVTSSGEWHLGIVGLIAARLKERFRRPAFAIAFDGSGKGSGSGRSIAGVDL 439

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G++V  AV   ++ KGGGHAMAAG+T+ R        F ++ A + V          IDG
Sbjct: 440 GRLVRDAVSHEVIEKGGGHAMAAGITIRRERLSDFRAFIEERALDAVARTRANESLDIDG 499

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            ++AS +   L   +E+AGP+G G+  PVFA  N ++ +  +V  AH++ T         
Sbjct: 500 AISASGLLPDLYRAIEAAGPFGQGHETPVFALGNLRVLNADIVGHAHVRATVGGPSGGRA 559

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             IAF+   TP+GE L++   + +H+ G L ++ +RG ++ +LRV+D +
Sbjct: 560 DVIAFKQAETPIGERLLKRSDRPVHIAGSLSLDRFRGQEQVRLRVIDVA 608


>gi|254512010|ref|ZP_05124077.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacteraceae
           bacterium KLH11]
 gi|221535721|gb|EEE38709.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacteraceae
           bacterium KLH11]
          Length = 580

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 249/588 (42%), Positives = 346/588 (58%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGVE S+SG RWV   G E    A  + Q+  +P  V +VL  R V    A  FL P 
Sbjct: 2   AFLGVEQSLSGRRWVG-PGVEVERAAEMMVQQTDLPRAVCQVLARRGVPAMEATGFLEPR 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP ++ D ++AA R ++A+ N ++I +F DYDVDG +S AL++ +L    V A 
Sbjct: 61  LKELLPDPRLMKDMEQAATRFLEAVRNRQRIAVFADYDVDGGSSAALLLVWLRQMGVQAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN   M++       LII VDCG+ S++ +  A  +G DVIV+DHH  
Sbjct: 121 LYVPDRIDEGYGPNIPAMQELAA-AHDLIICVDCGTLSHEPI--AAAKGADVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAA VVFL+LV   R +R         DL++LLDL
Sbjct: 178 GETLPDCVAVVNPNRQDESGDLGYFCAAAVVFLMLVEAGRQVRAAG--AKGPDLMALLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG NRA V +GL V  R+  PGL AL +   + S  ++ +LG+++GP 
Sbjct: 236 VALATVADVAPLIGANRALVRQGLKVMARRQRPGLVALSDVSRMDSAPSSYHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +D   E E L+ +LD LN  RR +E+A+   A A+   +  D
Sbjct: 296 VNAGGRIGQADLGARLLSTDSITEAEALSQRLDALNTERREIENAVRAAALAQAEERGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE   RP+  I F +  +G GSGRSI G D+G  
Sbjct: 356 ---APLVWAAGEGWHPGVVGIVASRLKEAANRPAIVIGF-DGDEGKGSGRSISGVDLGAS 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+LVKGGGH MAAGLTV R           +               K+DG L 
Sbjct: 412 IQRLASEGLLVKGGGHKMAAGLTVMRDQLEPAMARLSELLAKQGAGQSGPADLKLDGTLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            +A  + LI+ +E AGP+GAG P P +A P+ +++  + V   HL+++     S  L AI
Sbjct: 472 PAAATVDLIEQIEQAGPFGAGAPAPRYALPDLQVRFAKRVGETHLKLSLSDGMSGGLDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF  +  PLG+ L    G R H  G L VN W G +  QLR+ DA+  
Sbjct: 532 AFGAFDGPLGDRLSNHGGARFHFAGRLEVNSWGGRQSVQLRLEDAAEA 579


>gi|260426541|ref|ZP_05780520.1| single-stranded-DNA-specific exonuclease RecJ [Citreicella sp.
           SE45]
 gi|260421033|gb|EEX14284.1| single-stranded-DNA-specific exonuclease RecJ [Citreicella sp.
           SE45]
          Length = 579

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 242/588 (41%), Positives = 340/588 (57%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           ++LGVE S++G RWV   G E   +A A+ Q+   P  +  VL    V       +L P 
Sbjct: 2   SYLGVESSLNGRRWVG-PGVEQERQAEAMAQQTGQPRALCAVLARLGVEPAEVPGYLEPK 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D + AA R ++A+   E+I +F DYDVDG +S AL++ +L      A 
Sbjct: 61  LRELLPDPRGLRDMETAAARFLEAVKRRERIAVFADYDVDGGSSAALLIDWLHQMGREAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M++       LI+ VDCG+ S++ +  A    +  +V+DHH  
Sbjct: 121 LYIPDRIDEGYGPNVPAMQQLAG-AHDLIVCVDCGTLSHEPIAAAAGADV--VVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+     HLCAA VVFL+LV   R LR+        DL+S+LDL
Sbjct: 178 GETLPDCVAVVNPNRQDEDGTLAHLCAAAVVFLMLVECGRQLREAG--ARGPDLMSMLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG+NRA V +GL V  R+  PGL AL +   + +  ++ +LGY++GP 
Sbjct: 236 VALATVADVAPLIGVNRALVRQGLAVMARRQRPGLVALSDVARLDTAPSSYHLGYVLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG++++G+RLL S D  E E LA +LD LN  RR +E A+   A A+   +  D
Sbjct: 296 VNAGGRIGQADIGARLLASRDRHEAEALAERLDRLNTERREVEEAVRASALAQAEARGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   GD WHPG+VG++A+RLKE   RP+  I   + G+G GSGRS+ G D+G  
Sbjct: 356 ---APLVWAAGDGWHPGVVGIVASRLKEMTNRPAVVIGL-DGGEGKGSGRSVSGVDLGAS 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           V   V EG+L+KGGGH MAAGLTV             +               ++DG+L 
Sbjct: 412 VQRLVAEGLLLKGGGHKMAAGLTVAEAQLEAAMARLAELLAKQGAGKGGAADLRLDGMLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + L +MLE AGP+GAG P+P FAFP+ ++   + V   HL+++        L AI
Sbjct: 472 PGAATVELCEMLERAGPFGAGAPSPRFAFPDVQVSFAKQVGSGHLKLSLGDGLGARLDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F  +  PLG+ L   +G+R  + G L +N W G +  QLR+ DA+P 
Sbjct: 532 CFGAFEGPLGQALTDHKGQRFQMAGRLEINEWNGRRAVQLRLEDAAPA 579


>gi|323136274|ref|ZP_08071356.1| single-stranded-DNA-specific exonuclease RecJ [Methylocystis sp.
           ATCC 49242]
 gi|322398348|gb|EFY00868.1| single-stranded-DNA-specific exonuclease RecJ [Methylocystis sp.
           ATCC 49242]
          Length = 597

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 277/590 (46%), Positives = 355/590 (60%), Gaps = 6/590 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFLGVE S+ G  W + L   G   ALA+ Q H + D++ARVL  R VS+     +L+P+
Sbjct: 7   AFLGVERSVLGRPWRARLDASGEALALALAQTHGLDDMLARVLAGRGVSVAEVDRYLDPT 66

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123
           IR LMPDP  + D D A  R+ +AI   E+I IFGDYDVDGA S AL++ +         
Sbjct: 67  IRTLMPDPSTVRDMDAAVDRLARAIETGEQIAIFGDYDVDGACSSALLIDYWRAAEAPEP 126

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            ++IPDRI +GYGPN   +      GA L++TVDCG+TS++    A   G+DVIV+DHHQ
Sbjct: 127 LLHIPDRIFEGYGPNAEAIRNLAGRGATLLVTVDCGTTSHEPFAVARELGLDVIVLDHHQ 186

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLS 240
                +P   +VNPNR DDLSGQG LCAAGVVFL L  + R LR  +    +    DLLS
Sbjct: 187 APE-HLPDAIVVNPNRQDDLSGQGGLCAAGVVFLALAGLLRTLRTRDWWGDHRPAPDLLS 245

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LDLVALATV DV PL GLNRA+V KGL V R +   GL AL++   +  P  A +LG+ 
Sbjct: 246 SLDLVALATVADVAPLSGLNRAFVAKGLSVMRNRSRTGLAALMDAARMDGPPRAYHLGFA 305

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRIG++ LG+ LL   D  E   +A +LD LN  R+ +E   LE A A    
Sbjct: 306 LGPRINAGGRIGDAGLGACLLTLSDPVEASRIARELDRLNAERQAIEREALEAAVALAEE 365

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           Q     + S +VVEG  WHPG+VGL+AARLKEKF  PSFAI+F  +    GSGRS+ G D
Sbjct: 366 QFVKTNRLSCLVVEGSDWHPGVVGLIAARLKEKFNLPSFAIAFNGE-TCSGSGRSLSGVD 424

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           IGK V  AVE G+ VKGGGHAMAAG+TV       L +F        V A        ID
Sbjct: 425 IGKTVRRAVELGLAVKGGGHAMAAGITVLADRVAALREFLNDALAEQVEAARGADALVID 484

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
             L+   VN+ L+  +E AGP+G GNP P+F  P  ++    VV   H++    S D  +
Sbjct: 485 AALSGRGVNLDLLRRVERAGPFGQGNPEPLFVLPEQRIVDAAVVGTGHVRARLRSGDGAS 544

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + AIAFR  G+PLGE L+  RG+R HV   L  N +RG +R + R+ D +
Sbjct: 545 VDAIAFRAVGSPLGEALLGGRGERFHVAARLSTNQFRGVERVETRIADLA 594


>gi|90419170|ref|ZP_01227080.1| single-stranded-DNA-specific exonuclease recJ [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336107|gb|EAS49848.1| single-stranded-DNA-specific exonuclease recJ [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 597

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 280/590 (47%), Positives = 387/590 (65%), Gaps = 1/590 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           + FL V+ SI G RW++ L +     AL + Q   +PDIV+RVL  R ++   A  FL+P
Sbjct: 6   RTFLDVDRSIGGRRWLNALDERAEGAALKMAQSLGLPDIVSRVLAARGIAEADATGFLDP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
            IR LMPDP  LT  D AA R+  AI   E + IFGDYDVDGAAS AL+ R+L H  ++A
Sbjct: 66  RIRDLMPDPSRLTAMDAAAERLADAIGRRESVAIFGDYDVDGAASSALLWRYLKHFGIDA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            + IPDRI +GYGPNP+ M +   +GA LI+TVDCG+ S++A++ A  +G+DV+V+DHHQ
Sbjct: 126 AIRIPDRITEGYGPNPAAMRELAADGATLIVTVDCGTGSFEAIEAARAEGVDVVVLDHHQ 185

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLL 242
              E   A  LVNPNR DDLSG GHLCAAGVVF+ LV + R LR+         D+  LL
Sbjct: 186 TGPELPDANVLVNPNRQDDLSGLGHLCAAGVVFMTLVAVSRELRRRGMAQSKLPDVFGLL 245

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALATVCDVVPL+GLNRA+VV+GL VA  Q N GL AL     +S P+   + G+M+G
Sbjct: 246 DLVALATVCDVVPLVGLNRAFVVQGLKVAHAQRNGGLAALGRVSRLSGPMETHHFGFMLG 305

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  DD    + +A +L  LN+ R+ ME  ML +A+A+V  + 
Sbjct: 306 PRINAGGRIGDAALGSRLLCLDDDAACDEVAARLSALNEERQAMEQTMLAEADAEVAAEI 365

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
              +  +V+VV  + WHPGIVGL++ARLKE++ RP+FAI+F+  G+G GSGRSI GFD+G
Sbjct: 366 GSGEGPAVLVVGSNDWHPGIVGLISARLKERYRRPAFAIAFDGSGRGTGSGRSIGGFDLG 425

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           ++V  AV EG+LVKGGGHAMAAG+T+++   G    F ++ A   V AL      K+DG 
Sbjct: 426 RLVREAVIEGLLVKGGGHAMAAGVTIQKDRLGDFRGFLEERAAAAVSALREGDSLKVDGT 485

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           ++A+ +   L   +  AGP+G+G+ +P+FA   H++ S  +V   H++ T    D   + 
Sbjct: 486 VSAAGLTPDLYATIMRAGPFGSGHASPIFALARHRIDSSSIVGNGHVRATLRGADGARVS 545

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AIAF+   T +G+ L+ SR + +H  G L ++ +RG +  + R+LD +  
Sbjct: 546 AIAFKTADTEVGQRLLSSRDRPIHAVGTLSLDRFRGREEVRFRLLDLAEA 595


>gi|118588879|ref|ZP_01546286.1| single-stranded-DNA-specific exonuclease [Stappia aggregata IAM
           12614]
 gi|118438208|gb|EAV44842.1| single-stranded-DNA-specific exonuclease [Stappia aggregata IAM
           12614]
          Length = 605

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 282/589 (47%), Positives = 375/589 (63%), Gaps = 3/589 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +  LGV  S +   W   L    +  A+AI+Q H +PD++ARV+  R V  D A  FL+P
Sbjct: 11  RLVLGVARSANDNAWRERLSAADLRTAMAISQVHGLPDVLARVMAARGVLADEATGFLDP 70

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           S++LLMPDP  L D D A  R+  A+    KI IFGDYDVDGA S A+  ++L    ++ 
Sbjct: 71  SLKLLMPDPSSLVDMDAAVARVADAVQAGRKIAIFGDYDVDGATSSAIFAKYLQWLGLDP 130

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            ++IPDRI++GYGPN   +E     GA L++T+DCGSTS++A + A    +DV+VIDHHQ
Sbjct: 131 VIHIPDRIIEGYGPNGPAIEHLRQGGADLLVTLDCGSTSFEAFETARQLDLDVVVIDHHQ 190

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSL 241
           V        ALVNPNR DDLSGQGHL A GV FL LV + R LR+          DL++L
Sbjct: 191 VGETLPAVEALVNPNRQDDLSGQGHLAAVGVTFLFLVGLNRELRRRGVFQGAQQPDLMAL 250

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVAL TVCDVVPL GLNRAYV +GL V  ++ N GL AL +   +S      +LG++I
Sbjct: 251 LDLVALGTVCDVVPLQGLNRAYVTRGLAVMHQRRNYGLTALADTARVSGKPAPYHLGFLI 310

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LG+RLL ++D  E   +A +LD LN  R+ ME+ MLEQA+A+    
Sbjct: 311 GPRINAGGRIGDAALGARLLTTEDPHEARAIAERLDQLNTERQAMEAVMLEQADAEA-EM 369

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
               +  +V++   D WHPGIVGL+A+RLKE + RPSFAI+F+E GKG GSGRSI G D+
Sbjct: 370 AIQARDPAVLLTGSDDWHPGIVGLIASRLKEAYRRPSFAIAFDETGKGTGSGRSIPGVDL 429

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           GK V  AV+ G+L KGGGHAMAAGLTV       L  +F     + V         KID 
Sbjct: 430 GKAVRGAVDLGLLEKGGGHAMAAGLTVLSEKRADLEAYFNDVLKDDVETASANRELKIDA 489

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L A+  N+ L+++LE AGPYGAG+  PVFAFP H++    VV   H++ +  S D   L
Sbjct: 490 ALTATGANLDLLELLEKAGPYGAGHAEPVFAFPAHRISFADVVGKGHVRASITSGDGTAL 549

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +AI F+    P G+ L+Q RG+ +HV G L ++ W+G+ + QLR+LD +
Sbjct: 550 KAICFKADDKPHGQMLLQGRGQSLHVAGTLSIDTWQGTPKVQLRILDVA 598


>gi|158423475|ref|YP_001524767.1| RecJ exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158330364|dbj|BAF87849.1| RecJ exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 606

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 277/596 (46%), Positives = 369/596 (61%), Gaps = 5/596 (0%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           + ++ FL V  S +G  W   L       ALAI Q+H +PD+VAR+L  R V ID    F
Sbjct: 11  LTNRPFLSVARSATGRTWRDRLDVRASQMALAIAQRHFVPDLVARILAGRGVDIDDVPAF 70

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L+P+I+ L+PDP  LTD   A  R+  A+   E++ +FGDYDVDGA S AL++  L    
Sbjct: 71  LDPTIKALLPDPDTLTDMGGAVERVAAAVTRGEQVAVFGDYDVDGATSTALLVDVLRAAG 130

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           ++   +IPDRI +GYGPN + +E+    G  L+ITVDCG+TS + L  A   G+DV+VID
Sbjct: 131 LDPFFHIPDRIFEGYGPNVNAIEQLAARGVTLLITVDCGTTSTEPLAAARRLGLDVVVID 190

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFD 237
           HHQ       A A+VNPNR DDLSG GHLCA G+VF+ +V + R LR+           D
Sbjct: 191 HHQAGEHLPDANAIVNPNREDDLSGLGHLCAVGLVFVTVVGLVRKLREMGHWTGDRPAPD 250

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
           LL+ LDLVAL TV DVVPL GLNRA+V KGL+  RR+  PGL AL++   +  P    +L
Sbjct: 251 LLAALDLVALGTVADVVPLKGLNRAFVTKGLIALRRRQRPGLTALMDVSRLDGPPRPWHL 310

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML-EQAEA 356
           G+++GP INAGGRIG++ LG+RLL++ D  E   +A +LD LN  R+ +E  +L +    
Sbjct: 311 GFLLGPRINAGGRIGDATLGTRLLLTQDPAEARAIAAELDRLNTERQAVEQGILADAEAE 370

Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI 416
                      AS +VV G  WHPG+VGL+A+RLKE+F RP+FAI+F  +  G GSGRSI
Sbjct: 371 AQAAMGIAGDGASTVVVSGQGWHPGVVGLVASRLKERFNRPAFAIAFTGE-TGTGSGRSI 429

Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
           +G D+GK V  AVE G+LVKGGGHAMAAGLTVE+   G L  F +      V        
Sbjct: 430 QGVDLGKAVRAAVEAGLLVKGGGHAMAAGLTVEKARLGDLRAFLENALAPDVAKAAGEGT 489

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536
             IDG L AS    AL+D +  AGP+GAGNP PVFAFP+H+L         H++    + 
Sbjct: 490 LTIDGALTASGATPALLDQVAKAGPFGAGNPEPVFAFPSHRLTYAETFGNGHVRARLVAG 549

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           D  TL+A+AFR    PLG  ++ +RG+ +HV G L +++W+G  R  LRV D + V
Sbjct: 550 DGTTLKAVAFRCAEEPLGRAILNARGRNLHVAGGLDMDHWQGEARVSLRVRDVAEV 605


>gi|240139513|ref|YP_002963988.1| putative single-strand DNA-specific exonuclease RecJ
           [Methylobacterium extorquens AM1]
 gi|240009485|gb|ACS40711.1| putative single-strand DNA-specific exonuclease RecJ
           [Methylobacterium extorquens AM1]
          Length = 611

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 263/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            + FL V  S  G  W    G  G+   A+ +TQ + +PD++ARVLV R V    A  +L
Sbjct: 18  PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP +L D + A  R+  A+   E + IFGDYDVDGA+S AL+  +L    V
Sbjct: 78  APRLRDLMPDPSVLVDMEAAVERLAYAVRARETVAIFGDYDVDGASSAALLADYLRALGV 137

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++ VDCG+  ++ L  A   G+DVIV+DH
Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTTLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239
           H    E     ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D          L 
Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDGVFATSAEPRLT 257

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++   +S P  A +LG+
Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG++ LG+RLL + D  E   +A +LD LN+ R+ +E+  + +AEA++ 
Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTADPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                     V++     WHPGIVGL+AARLKE+FGRP+FA + + DG  +GSGRS+ G 
Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  V  AVE G+ VKGGGHAMAAG+T+         +         V          I
Sbjct: 438 DLGGAVRSAVEAGLAVKGGGHAMAAGVTLPPGGLAAFGESLTHDLVETVGRARAAEALLI 497

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A      L+ +++ AGP+G G P PV A P H++    +V   H++    S D +
Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRIVDAGIVGNGHVRARLVSGDGQ 557

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + AIAFR    PLG  L+   G+  HV G L  + WRG++R Q+R+ D +P
Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609


>gi|13471056|ref|NP_102625.1| single-strand DNA-specific exonuclease [Mesorhizobium loti
           MAFF303099]
 gi|14021800|dbj|BAB48411.1| single-strand DNA-specific exonuclease [Mesorhizobium loti
           MAFF303099]
          Length = 592

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 307/587 (52%), Positives = 387/587 (65%), Gaps = 1/587 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           + FL +  S +G  W   L +     ALAI Q H +PDIVARVL  R V+ D  + FL P
Sbjct: 5   RLFLDIRQSATGLSWEHRLTERQDMVALAIAQGHGVPDIVARVLAGRGVTADETERFLEP 64

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR L+P+P  LTD DKAA RI  A+   EK+ IFGDYDVDGAAS AL+ RFL+H S+ +
Sbjct: 65  TIRDLLPNPASLTDMDKAATRIAAAVMAREKVAIFGDYDVDGAASSALLKRFLAHFSIPS 124

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP  M + ++ GA LI+TVDCG+ S  ++  A   G DV+V+DHHQ
Sbjct: 125 EIYIPDRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAISVDAANEAGADVVVLDHHQ 184

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           V      A A+VNPNR DDLSGQGHLCAAGVVFL LV   +ILR  + V    DLLSLLD
Sbjct: 185 VGGALPAAIAVVNPNRDDDLSGQGHLCAAGVVFLALVQTAKILRGLSDVAP-PDLLSLLD 243

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATVCDVVPL G+NRA+VVKGL +AR+Q N GL AL     I  PI+  +L Y+IGP
Sbjct: 244 LVALATVCDVVPLTGVNRAFVVKGLQMARQQKNEGLAALARVSRIGEPISTFHLAYLIGP 303

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG++ LGSRLL +DD  E   +A  LD LNQ R+LME  ML  A A+   +  
Sbjct: 304 RINAGGRIGDAALGSRLLATDDPVEARTIAETLDRLNQERQLMEQEMLAAARAEADAELA 363

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                +++V   + WHPGIVGLLA+RLK+   RP+FAI+F   G G GSGRS+ GFD+G+
Sbjct: 364 GGSGPAIVVTASNNWHPGIVGLLASRLKDHARRPAFAIAFNAVGIGTGSGRSVSGFDLGR 423

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  A + G++VKGGGH MAAG+TVER   G L  FF++ A   V  L       IDG L
Sbjct: 424 LVREAADAGLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQDEESLAIDGAL 483

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
            A    ++L+D LE AGP+GAG+  PVF  P H+L   R V   H++   +S     + A
Sbjct: 484 AAEGATLSLLDALEKAGPFGAGHVAPVFVLPRHRLADARPVGTNHIRCELQSDAGGRIPA 543

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAFR   T LGEFL ++RGK +HV G L  NYW G++  Q R++DA+
Sbjct: 544 IAFRAVDTVLGEFLFKNRGKSVHVAGSLSGNYWNGNRTVQFRIVDAA 590


>gi|310816884|ref|YP_003964848.1| single-stranded-DNA-specific exonuclease RecJ [Ketogulonicigenium
           vulgare Y25]
 gi|308755619|gb|ADO43548.1| single-stranded-DNA-specific exonuclease RecJ [Ketogulonicigenium
           vulgare Y25]
          Length = 581

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 258/588 (43%), Positives = 345/588 (58%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGV  S++G  WV    +       A++Q+  +   +A +L  R +  D A+ FL P 
Sbjct: 2   SFLGVTDSVTGRAWVGPDLETD-RLTEALSQQLGLSRPLAALLAQRGIDADGAEGFLTPR 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R LMPDP  L D +KAA R+V A+   ++I IFGDYDVDG AS AL++ +L +  + A 
Sbjct: 61  LRDLMPDPRSLRDMEKAAARLVLAVQTRQRIAIFGDYDVDGGASSALLIDWLRNFGLQAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M         LII VDCG+ S++AL  AT    DVIV+DHH  
Sbjct: 121 LYIPDRIDEGYGPNVPAMADLAARH-DLIICVDCGTLSHEALGAATAA--DVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                PA A+VNPNR D+     +LCAAGVVFL LV   R LR         DL SLLDL
Sbjct: 178 GETLPPALAVVNPNRQDESGDLTYLCAAGVVFLALVEANRQLRAGGL--QGPDLTSLLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+GLNRA V +GL V  R+  PGL AL +   I S  ++ +LGY++GP 
Sbjct: 236 VALATVADVAPLVGLNRALVRQGLAVMGRRARPGLVALADVARIDSAPSSYHLGYILGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG ++LG+RLL + D  E   +A +LD LN  RR +ESA+ + A A+   +  +
Sbjct: 296 VNAGGRIGRADLGARLLATTDPHEAAAMAAQLDALNTERRAIESAVRDAAIAQAEARGLE 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++    + WHPG+VG++AAR+KE   RPS  I F + G G GSGRS+ G D+G  
Sbjct: 356 ---APLVWAASEGWHPGVVGIVAARIKEATNRPSVVIGF-DGGIGKGSGRSVSGVDLGAA 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV R N         +               +ID +L 
Sbjct: 412 IQRVAAEGLLLKGGGHKMAAGLTVTRENLEPAMARLSELLARQGAGAGGPSDLRIDALLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  +A+I+ LE AGP+GA  P P FA P+  +Q ++ V   HL++T        L AI
Sbjct: 472 PGAATVAMIEQLEQAGPFGASAPAPRFALPDVVVQYVKPVGSDHLKVTLGDGLGARLDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF    +PLG  L  S  +R+HV G L VN+W+G    QLR+ DA+  
Sbjct: 532 AFNAAQSPLGHLLTHSGSQRVHVVGRLEVNHWQGRASAQLRIEDAAKA 579


>gi|84502743|ref|ZP_01000862.1| probable single-stranded DNA-specific exonuclease [Oceanicola
           batsensis HTCC2597]
 gi|84389138|gb|EAQ01936.1| probable single-stranded DNA-specific exonuclease [Oceanicola
           batsensis HTCC2597]
          Length = 582

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 243/588 (41%), Positives = 336/588 (57%), Gaps = 10/588 (1%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           FL V  S++G RWV     E    A A+ Q       + +VL  R V+ + A  FL P++
Sbjct: 3   FLNVASSLTGRRWVG-PSVELDRAAEALAQARGFDRAICQVLARRGVTAEAADLFLAPAL 61

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           R L+PDP  L D + AA R +QA+   E+I IF DYDVDG +S AL++ +L      A +
Sbjct: 62  RDLLPDPRRLRDMEPAAARFLQAVKRRERIAIFADYDVDGGSSAALLIDWLRQMGREATL 121

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           Y+PDRI +GYGPN   M+        LI+ VDCG+ S+D +      G DV+++DHH   
Sbjct: 122 YVPDRIDEGYGPNVPAMQAL-GRTHDLIVCVDCGTLSHDPVA---AAGCDVVILDHHLGG 177

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  A VNPNR D+     HLCAA VVFL+LV   R  R +       DL+++LDLV
Sbjct: 178 ETLPDCVACVNPNRQDEDGALAHLCAAAVVFLMLVEANRQARAEG-ATSLPDLMAMLDLV 236

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
           ALATV DV PL G+NRA+V +GL +  R+  PGL AL +   + S  TA +LGY++GP I
Sbjct: 237 ALATVADVAPLTGVNRAFVRQGLAIMARRERPGLAALADVARMDSAPTAYHLGYLLGPRI 296

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NAGGRIG+++LG+RLL + D  E + LA +L+ LN  RR +E+A+   A A+   +  D 
Sbjct: 297 NAGGRIGKADLGARLLAATDRHEAQALADRLNELNAERREIEAAVTAAAMAQAEERGLD- 355

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
             A ++   G+ WHPG+VG++A+RLKE   RP+  I   +  +G GSGRS+ G D+G  V
Sbjct: 356 --APLVWASGEGWHPGVVGIVASRLKEATNRPAVVIGL-DGDEGKGSGRSVAGVDLGASV 412

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                EG+L+KGGGH MAAGLTV R       +                   ++DG+L  
Sbjct: 413 QRLAAEGLLIKGGGHRMAAGLTVARDAIPEAMERLGALLAKQGAGTGGAADLRLDGLLMP 472

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
            A  + LI  +E+AGP+GAG P P F FP+  +   + V  +HL++ F       L AIA
Sbjct: 473 GAATVPLIQQIETAGPFGAGAPAPRFVFPDVAVSFAKRVGESHLKLRFGDGMGAALDAIA 532

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           F  Y  PLG  L    G R+H+ G L +N W G +  QLR+ DA+P +
Sbjct: 533 FGAYEGPLGTALSDRSGARVHLAGRLELNSWGGRQSVQLRIEDAAPAD 580


>gi|254475596|ref|ZP_05088982.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. R11]
 gi|214029839|gb|EEB70674.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. R11]
          Length = 580

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 231/588 (39%), Positives = 339/588 (57%), Gaps = 9/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G RW+          A  + Q+  +P  V +VL  R V    A+ FL P 
Sbjct: 2   SFLGVETSLTGRRWIGPDLD-TARAAEMMEQQIGLPPAVCQVLARRGVPAHEAQGFLTPQ 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R +QA+   ++I +F DYDVDG +S AL++ +L    + A 
Sbjct: 61  LKELLPDPRRMKDMEIAAARFLQAVEKRQRIAVFADYDVDGGSSAALLLVWLQQAGLGAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN   M     +   LI+ VDCG+ S+  +  A   G DVIV+DHH  
Sbjct: 121 LYVPDRIDEGYGPNDEAMAALARDH-DLIVCVDCGTLSHGPI--AAAMGADVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV + R +R    +    DL++LLDL
Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQMRDKG-LGTGPDLMALLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+  NRA V +GL V   +  PGL AL +   + S  +  +LG+++GP 
Sbjct: 237 VALATVADVAPLVDANRALVRQGLKVMAARQRPGLVALADVSRMDSAPSTYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL + +  E E +A +LD LN  RR +E+A+   A  +   +  D
Sbjct: 297 VNAGGRIGKADLGARLLATTNPAEAEAIAARLDELNTERREIENAVRAAALEQAEARGFD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I   +  +G GSGRS+ G D+G  
Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGL-DGDEGKGSGRSVSGIDLGAS 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+ VKGGGH MAAGLTV R       +   +         +     K+DG+L 
Sbjct: 413 IQRVAAEGLFVKGGGHKMAAGLTVSRDKLEPAMERLAELLAKQGAGDLGPADLKLDGMLM 472

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI+ ++ AGP+GAG P P + FP+ +++  + +  +HL+++     S  + AI
Sbjct: 473 PGAATVPLIEQIDQAGPFGAGAPAPRYGFPDLQVRFAKRIGESHLKLSLSDGLSSGIDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F  + T LG  L+   G R H  G L +N W G +  QLR+ DA+  
Sbjct: 533 CFGAFDTALGPRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA 580


>gi|319783896|ref|YP_004143372.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169784|gb|ADV13322.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 594

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 309/587 (52%), Positives = 390/587 (66%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           + FL V  S+SG  W   L +     ALAI Q + +PDIVARVL  R V+ +  + FL+P
Sbjct: 6   RLFLDVRQSVSGVSWEHRLTERQDMIALAIAQGYGVPDIVARVLAGRGVTAEQTERFLDP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR L+PDP  LTD D+AA RI  A+   EK+ IFGDYDVDGAAS AL+ RFL+H SV +
Sbjct: 66  TIRDLLPDPASLTDMDRAAARIAAAVMAREKVAIFGDYDVDGAASSALLKRFLTHFSVPS 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP  M + ++ GA LI+TVDCG+ S  ++  A   G DV+V+DHHQ
Sbjct: 126 EIYIPDRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAASIDAANEAGADVVVLDHHQ 185

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           V      A A+VNPNR DDLSGQGHLCAAGVVFL LV   RILR         DLLSLLD
Sbjct: 186 VGGALPAAIAVVNPNRDDDLSGQGHLCAAGVVFLALVQTARILRSRMADATPPDLLSLLD 245

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           +VALATVCDVVPL G+NRA+VVKGL +AR+Q N GL AL     I  PI+  +L Y+IGP
Sbjct: 246 IVALATVCDVVPLTGVNRAFVVKGLQMARQQKNEGLAALARVSRIGEPISTFHLAYLIGP 305

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG++ LGSRLL +DD  E   +A  LD LNQ R+LME  ML  A A+   +  
Sbjct: 306 RINAGGRIGDAALGSRLLATDDPVEARTIAETLDRLNQERQLMEQEMLAAARAEADAELA 365

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                +++V   + WHPGIVGLLA+RLK+   RP+FAI+F  +G G GSGRS+ GFD+G+
Sbjct: 366 GGNGPAIVVTASNSWHPGIVGLLASRLKDHARRPAFAIAFNANGIGTGSGRSVSGFDLGR 425

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  A   G++VKGGGH MAAG+TVER   G L  FF++ A   V  L       IDG L
Sbjct: 426 LVREAAIAGLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQGEESLAIDGAL 485

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
            A    ++L+D LE AGP+GAG+  PVFA P H+L   R V   H+++  +S+    +QA
Sbjct: 486 AAEGATLSLLDALEQAGPFGAGHVAPVFALPRHRLADARPVGTNHIRVELQSESGGRIQA 545

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAFR   T LGEFL ++RGK +HV G L  NYW G++  Q R+ DA+
Sbjct: 546 IAFRAVDTALGEFLFKNRGKTIHVAGSLSGNYWNGNRTVQFRITDAA 592


>gi|254486182|ref|ZP_05099387.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           GAI101]
 gi|214043051|gb|EEB83689.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           GAI101]
          Length = 579

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 247/588 (42%), Positives = 347/588 (59%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGV+ S++G RWV   G E    +  + Q+ ++P  + +VL  R V    A+ FL PS
Sbjct: 2   SFLGVDASLTGRRWVG-PGVEVERASEVLGQQTSLPPALCQVLARRGVGPAEAEGFLAPS 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D +KAA R + A+   ++I +F DYDVDG +S AL++ +L     +A 
Sbjct: 61  LRDLLPDPRSLRDMEKAATRFLAAVKARQRIAVFADYDVDGGSSAALLLVWLRDMGCSAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN   M         LI+ VDCG+ S+  +  A   G +VIV+DHH  
Sbjct: 121 LYVPDRIDEGYGPNDEAMAALAA-KHDLIVCVDCGTLSHGPIAAAV--GAEVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A+A+VNPNR D+     HLCAAGVVFL+LV   R LR+        DL++LLDL
Sbjct: 178 AETLPDAHAVVNPNRQDEDGALAHLCAAGVVFLMLVEAGRQLREAG--AKGPDLMALLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG+NRA+V +GL V  R+   GL AL +   + +  ++ +LG+++GP 
Sbjct: 236 VALATVADVAPLIGVNRAFVRQGLRVMARRDRLGLAALADAARMDTAPSSYHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG+++LG+RLL   D  E   LA +LD LN  RR +E+A+   A  +   +  D
Sbjct: 296 INAGGRIGQADLGARLLACSDPHEAAALAERLDTLNTERRDVEAAVRAAALDQAEVRGFD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   GD WHPG+VG++A+RLKE   RPS  I F EDG G GSGRS+ G D+G  
Sbjct: 356 ---APLVWASGDGWHPGVVGIVASRLKEASNRPSIVIGF-EDGIGKGSGRSVSGIDLGAP 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV             +        L      ++DG+L 
Sbjct: 412 IQRLAAEGLLIKGGGHKMAAGLTVAEDKLEAAMARLSELLAKQGAHLGGAADLRLDGMLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            +A  + L + +E AGP+GAG P P +AF + +++    V  +HL+++F       L AI
Sbjct: 472 PAAATVELAEQIEQAGPFGAGAPAPRYAFADMQIRYANRVGESHLKISFGDGSGTKLDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF  +  P+G  L    G R H+ G L +N WRG +  QLR+ DA+P 
Sbjct: 532 AFGAFDGPMGPALENHGGARFHLAGRLDINSWRGRQSVQLRLEDAAPA 579


>gi|254449696|ref|ZP_05063133.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter
           antarcticus 238]
 gi|198264102|gb|EDY88372.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter
           antarcticus 238]
          Length = 588

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 250/589 (42%), Positives = 340/589 (57%), Gaps = 10/589 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFL V  S +G RWV     E    A A+ Q  A+P  V R LV R ++   A  FL P+
Sbjct: 10  AFLDVAQSTTGRRWVG-PSVEDDRLAEAMAQDTALPLPVCRTLVRRGITAQDAASFLAPT 68

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R LMPDP  L D + AA RIV A  + +KI IF DYDVDG  S AL++ +L    V   
Sbjct: 69  LRDLMPDPRSLRDMEPAAARIVAAANSGQKIAIFADYDVDGGTSAALLIDWLRGFGVTPT 128

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN   M     +   LII VDCG+ S+  ++    +G DV+V+DHH  
Sbjct: 129 LYVPDRIDEGYGPNDDAMSTLARDH-DLIICVDCGTLSHGPIE--AAKGADVVVLDHHLG 185

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                PA A+VNPNR D+     HLCAAGVVFLVLV   R LR         DL+SLLDL
Sbjct: 186 GETLPPALAVVNPNRQDEAGDLAHLCAAGVVFLVLVEANRQLRDAG--SKTPDLMSLLDL 243

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VAL TV DV PLIG+NRA+V +GL V  R+   GL  L +   + +  ++ +LG+++GP 
Sbjct: 244 VALGTVADVAPLIGVNRAFVRQGLTVMARRQRVGLVTLADVARMDTAPSSYHLGFLLGPR 303

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG+++LG+RLL + D ++ + +A +LD LN  RR +E+ + E A  +   +  D
Sbjct: 304 INAGGRIGKADLGARLLATIDPRQAQSMAERLDELNTERREIENQVREMAIEQAEQRGTD 363

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                ++   G+ WHPG+VG++AARLKE   RP+  I   +   G GSGRS+ G D+G  
Sbjct: 364 ---RPLVWAAGEGWHPGVVGIVAARLKEASNRPAIVIGL-DGDIGKGSGRSVFGIDLGAA 419

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV R       D   +         I     ++DG+L 
Sbjct: 420 IQRCAAEGLLIKGGGHKMAAGLTVARDKVDAAMDRLSELLAKQGANDIGPADLRVDGLLM 479

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI+++E AGP+GAG P P F FP+  +   +VV   HL++TF    S  + AI
Sbjct: 480 PGAATVDLINIMEQAGPFGAGAPAPRFVFPDCAINFTKVVGANHLKVTFGDGISARIDAI 539

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            F     P+G  L    G R H+ G L +N W+G +  QLR+ DA+P  
Sbjct: 540 CFGAMDGPIGPMLRDHGGARFHLAGRLEINTWQGRQSPQLRLEDAAPAT 588


>gi|254441408|ref|ZP_05054901.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter
           antarcticus 307]
 gi|198251486|gb|EDY75801.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter
           antarcticus 307]
          Length = 589

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 253/589 (42%), Positives = 341/589 (57%), Gaps = 10/589 (1%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFL V  S +G RWV     E    A A+ Q  A+P  V R LV R V    A  FL P
Sbjct: 10  RAFLDVAQSATGRRWVG-PSVEDDRLAEAMAQDTALPLPVCRTLVRRGVVAQDAAAFLAP 68

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R LMPDP  L D + AA RIV A +  ++I IF DYDVDG  S AL++ +L    V  
Sbjct: 69  TLRDLMPDPRSLRDMEPAAARIVAAAHGRQRIAIFADYDVDGGTSAALLIDWLRGFGVTP 128

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +Y+PDRI +GYGPN + M     +   LII VDCG+ S+  +  A  +G DV+V+DHH 
Sbjct: 129 TLYVPDRIDEGYGPNDNAMFALARDH-DLIICVDCGTLSHGPI--AAAKGADVVVLDHHL 185

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+     HLCAAGVVFLVLV   R LR         DL++LLD
Sbjct: 186 GGEMLPPALAVVNPNRQDETGDLAHLCAAGVVFLVLVEANRQLRDAG--SKTPDLMALLD 243

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVAL TV DV PLIG+NRA+V +GL V  R+   GL AL +   + +  ++ +LG+++GP
Sbjct: 244 LVALGTVADVAPLIGVNRAFVRQGLTVMARRQRVGLVALADVARMDTAPSSYHLGFLLGP 303

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL S D  E + +A +LD LN  RR +E+ + E A  +   +  
Sbjct: 304 RVNAGGRIGKADLGARLLASTDPHEAQSMAQRLDELNTERREIENQVREMAIEQAEQRGT 363

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           D     ++   G+ WHPG+VG++AARLKE   RP+  I   +   G GSGRS+ G D+G 
Sbjct: 364 D---RPLVWAAGEGWHPGVVGIVAARLKEASNRPAIVIGL-DGDTGKGSGRSVSGIDLGA 419

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTV R       +   +         I     K+DGVL
Sbjct: 420 AIQRCTAEGLLIKGGGHKMAAGLTVARDKVDAAMERLSELLAKQGAGDIGPADLKVDGVL 479

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
              A  + LI+++E AGP+GAG P P F FP+  +   +VV   HL++TF    S  + A
Sbjct: 480 MPGAATVDLIEIMEQAGPFGAGAPAPRFVFPDCTINFTKVVGANHLKVTFGDGISGRVDA 539

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           I F     P+G  L    G R H+ G L +N W+G +  QLR+ DA+P 
Sbjct: 540 ICFGAMDGPIGPMLRDHGGARFHLAGRLEINTWQGRQSPQLRLEDAAPA 588


>gi|254561927|ref|YP_003069022.1| single-strand DNA-specific exonuclease RecJ [Methylobacterium
           extorquens DM4]
 gi|254269205|emb|CAX25171.1| putative single-strand DNA-specific exonuclease RecJ
           [Methylobacterium extorquens DM4]
          Length = 611

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 263/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            + FL V  S  G  W    G  G+   A+ +TQ + +PD++ARVLV R V    A  +L
Sbjct: 18  PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP +L D + A  R+  A+   E + IFGDYDVDGA+S AL+  +L    V
Sbjct: 78  APRLRDLMPDPSVLVDMEAAVERLAHAVRGREAVAIFGDYDVDGASSAALLADYLRALGV 137

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++ VDCG+  ++ L  A   G+DVIV+DH
Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTMLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239
           H    E     ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D          L 
Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDGVFATSAEPRLT 257

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++   +S P  A +LG+
Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIGE+ LG+RLL + D  E   +A +LD LN+ R+ +E+  + +AEA++ 
Sbjct: 318 LVGPRINAGGRIGEAGLGARLLTTADPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                     V++     WHPGIVGL+AARLKE+FGRP+FA + + DG  +GSGRS+ G 
Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  V  AVE G+ +KGGGHAMAAG+T+         +         V          I
Sbjct: 438 DLGGAVRGAVEAGLAIKGGGHAMAAGVTLPPGGLAAFGESLTHDLVEAVGRARAAEALLI 497

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A      L+ +++ AGP+G G P PV A P H++    +V   H++    S D +
Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRIVDAGIVGNGHVRARLVSGDGQ 557

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + AIAFR    PLG  L+   G+  HV G L  + WRG++R Q+R+ D +P
Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609


>gi|163852181|ref|YP_001640224.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           extorquens PA1]
 gi|163663786|gb|ABY31153.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           extorquens PA1]
          Length = 611

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 264/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            + FL V  S  G  W    G  G+   A+ +TQ + +PD++ARVLV R V    A  +L
Sbjct: 18  PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP +L D + A  R+  A+   E + IFGDYDVDGA+S AL+  +L    V
Sbjct: 78  APRLRDLMPDPSVLVDMEAAVERLAYAVRAREAVAIFGDYDVDGASSAALLAGYLRALGV 137

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++ VDCG+  ++ L  A   G+DVIV+DH
Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTMLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239
           H    E     ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D          L 
Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDGVFATSTEPRLT 257

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++   +S P  A +LG+
Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG++ LG+RLL + D  E   +A +LD LN+ R+ +E+  + +AEA++ 
Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTTDPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                     V++     WHPGIVGL+AARLKE+FGRP+FA + + DG  +GSGRS+ G 
Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  V  AVE G+ VKGGGHAMAAG+T+         D         V          I
Sbjct: 438 DLGGAVRGAVEAGLAVKGGGHAMAAGVTLPPGGLAAFGDSLTHDLVEAVGRARAAEALLI 497

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A      L+ +++ AGP+G G P PV A P H++    +V   H++    S D +
Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRIVDAGIVGNGHVRARLVSGDGQ 557

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + AIAFR    PLG  L+   G+  HV G L  + WRG++R Q+R+ D +P
Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609


>gi|188582130|ref|YP_001925575.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           populi BJ001]
 gi|179345628|gb|ACB81040.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           populi BJ001]
          Length = 611

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 262/592 (44%), Positives = 359/592 (60%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            + FL V  S+ G  W    G  G    A  +TQ + +PD++ARVLV R V    A+ +L
Sbjct: 18  PRPFLDVTASVLGRPWCERCGDPGQQALATTMTQAYGLPDLLARVLVGRGVGPAEAEAYL 77

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P +R LMPDP +L D + A  R+  A+ + E + IFGDYDVDGA+S AL+  +L    V
Sbjct: 78  SPRLRDLMPDPSVLVDMEAAVDRLAHAVRSREAVAIFGDYDVDGASSAALLADYLRALGV 137

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++ VDCG+  ++ L  A   G+DVIV+DH
Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTALRGEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239
           H    E     ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR +          L 
Sbjct: 198 HGAPEELPATRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRGEGVFASAAEPRLT 257

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LDLVALATV DVVPL+GLNRA+V++GL V R +G PGL AL++   +S P  A +LG+
Sbjct: 258 DFLDLVALATVADVVPLVGLNRAFVMQGLAVMRARGRPGLAALLDAAGLSEPPEAWHLGF 317

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG++ LG+RLL + DS E   +A +LD LN+ R+ +E+  + +AEA++ 
Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTADSMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
            +        V++     WHPGIVGL+AARLKE+FGRP+FA + + DG  +GSGRS+ G 
Sbjct: 378 ARLAGDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  V  AV  G+ VKGGGHAMAAG+T+         +   +     V          I
Sbjct: 438 DLGGAVRDAVAAGLAVKGGGHAMAAGVTLPPGGLAAFGESLARDLTEAVGQARAAEALLI 497

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A      L+ +++ AGP+G G P PV A P H++    VV   H++    S D +
Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRVVDAGVVGNGHVRARLVSGDGQ 557

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + AIAFR    PLG  L+   G+  HV G L  + WRG++R Q+R+ D +P
Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609


>gi|154248669|ref|YP_001419627.1| single-stranded-DNA-specific exonuclease RecJ [Xanthobacter
           autotrophicus Py2]
 gi|154162754|gb|ABS69970.1| single-stranded-DNA-specific exonuclease RecJ [Xanthobacter
           autotrophicus Py2]
          Length = 626

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 276/593 (46%), Positives = 371/593 (62%), Gaps = 4/593 (0%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           + ++ FL V  S +G  W   L   G   ALA+ Q+  I +++ARVL  R+V +D  + +
Sbjct: 32  LPNRLFLDVARSATGRTWRERLDVRGAQTALAMAQRTGISELLARVLAGRDVPLDGVEQY 91

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L+PSIR L+PDP  LTD   A  R+ +A+ + E++ +FGDYDVDGA + ALM+  L    
Sbjct: 92  LDPSIRTLLPDPDTLTDMGAAVARLSRAVTSGEQVAVFGDYDVDGACATALMVGVLRAAG 151

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           ++   +IPDRI +GYGPN   +E+    G  L++TVDCG+TS + L  A   G+D +VID
Sbjct: 152 LDPLFHIPDRIFEGYGPNVPAIEQLAARGVTLLVTVDCGTTSMEPLAAARRLGMDTVVID 211

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFD 237
           HHQ       A A+VNPNR DDLSG GH+CAAG+ F+  V + R LRQ+          D
Sbjct: 212 HHQSGERLPDAAAIVNPNREDDLSGLGHVCAAGLAFITAVGLVRALRQNGHFNTARPAPD 271

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
           LL  LDLVALATV DVVPL GLNRA+V KGL+  RR+G  GL AL++   +  P    +L
Sbjct: 272 LLDTLDLVALATVADVVPLKGLNRAFVTKGLLAMRRRGRIGLTALMDAARLDGPPRPFHL 331

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G++IGP INAGGRIGE+ LG++LL++ D  E   +A +LD LN  R+ +E A+L  AEA+
Sbjct: 332 GFLIGPRINAGGRIGEATLGAKLLLTQDPAEARQIAAELDRLNGERQEVERAILAAAEAE 391

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
                    + SVIVV GD WHPG+VGL+A+RLKE+F RP+FAI+F  +  G GSGRS+ 
Sbjct: 392 AEAALGLSDEGSVIVVSGDGWHPGVVGLVASRLKERFQRPAFAIAFNGE-TGTGSGRSLP 450

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
           G DIG+ V  A+E G+LVKGGGHAMAAGLTVER   G L   F++     V         
Sbjct: 451 GVDIGRAVRAALEAGLLVKGGGHAMAAGLTVERARLGALRAAFEERLAADVARARAEGTL 510

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
            IDG L A      L++M+  AGP+GAGN  PVFAFP H++  +      H++    S D
Sbjct: 511 SIDGALTARGATTDLVEMVSRAGPFGAGNGEPVFAFPGHRISYVESFGAGHVRARISSPD 570

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             TL+A AFR    PLG  L+ +RG+ +HV G L ++ W+G  R  LR+ D +
Sbjct: 571 GTTLKATAFRCAEEPLGRALLAARGRPLHVAGSLELDTWQGETRVALRMRDVA 623


>gi|126727763|ref|ZP_01743594.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales
           bacterium HTCC2150]
 gi|126703019|gb|EBA02121.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales
           bacterium HTCC2150]
          Length = 582

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 235/585 (40%), Positives = 341/585 (58%), Gaps = 10/585 (1%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68
           VE S++G RWV L     +  A A+ Q+  +   ++R+L  R V+ D +  FL PS+R L
Sbjct: 5   VENSLTGRRWVGLGTD-TVRAAEALAQQTGLSLPLSRILARRGVAADESTSFLAPSLRDL 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           MPDP  + D +KAA R + A+  ++KI IF DYDVDG +S AL++ +L    + A +Y+P
Sbjct: 64  MPDPRSMLDMEKAAGRFLAAVKANQKIAIFADYDVDGGSSAALLVWWLRDFGIQATVYVP 123

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           DRI +GYGPN + M +       L+I VDCG+ S+  +     +G DVIV+DHH      
Sbjct: 124 DRIDEGYGPNDAAMAELAA-THDLVICVDCGTLSHGPI--QATKGADVIVLDHHLGGETL 180

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             A A+VNPNR D+     HLCAAGVVFL+LV   R  R       + DL++LLDLVALA
Sbjct: 181 PDALAVVNPNRQDETGDLAHLCAAGVVFLMLVEANRQRRVLG--EKSPDLMALLDLVALA 238

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
           TV DV PLIG+NRA+V +GL +   +  PGL AL +   + S  T+ +LG+++GP +NAG
Sbjct: 239 TVADVAPLIGVNRAFVRQGLKIMAARQRPGLVALADVARMDSAPTSYHLGFLLGPRVNAG 298

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRIG ++LG+RLL +D+  E   +A +LD LN  RR +E+ + E A  +  ++      A
Sbjct: 299 GRIGAADLGARLLSTDNPHEAGAMAERLDQLNSERRAIENQVREGALEQAQSRDLA---A 355

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            +I    D WHPG+VG++A+RLKE   RPS  I F E  +G GSGRS+ G D+G  +   
Sbjct: 356 PLIWAADDGWHPGVVGIVASRLKESTNRPSVVIGF-EGDEGKGSGRSVSGVDLGASIQKL 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
           V EG+L KGGGH MAAGL++ R       +   +         +       D +L  +A 
Sbjct: 415 VAEGLLTKGGGHKMAAGLSLTRAQLEPAMERLGELLAKQGAGELGPRDLHYDSILMPTAA 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
              LI+ +E+AGP+GA    P F FP+ ++   + V  +HL+ +F  +    L  IAF  
Sbjct: 475 TTDLIEQIENAGPFGASAAAPRFVFPDQRITFAKPVGESHLRFSFGDETGTRLDGIAFGA 534

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           + + +G  L  +     H+ G L +N W G ++ QLR+ DA+P +
Sbjct: 535 FDSEIGNSLQNAGHNLFHLAGRLELNTWGGRQKVQLRLEDAAPAD 579


>gi|114570056|ref|YP_756736.1| single-stranded-DNA-specific exonuclease RecJ [Maricaulis maris
           MCS10]
 gi|114340518|gb|ABI65798.1| exonuclease RecJ [Maricaulis maris MCS10]
          Length = 603

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 233/595 (39%), Positives = 337/595 (56%), Gaps = 10/595 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
               LGV  S+SG RW      +G      + ++ +IPD +ARV+  R V+ D A  FL+
Sbjct: 12  SSPLLGVSRSLSGKRWRLREADDG--AVAMMARQQSIPDALARVMAARGVAPDQAAAFLS 69

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P +R   PDP    D DKAA  +  AI     + +F DYDVDGA S A ++R+  H    
Sbjct: 70  PRLRDSFPDPSDFADMDKAAGLVWDAIEAERPMAVFADYDVDGATSAAQLIRYFRHFDRT 129

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           A +Y+PDR+ +GYGP+ +  +     GA+L+ITVDCG+ +  AL +A + G+DVIVIDHH
Sbjct: 130 AEIYVPDRVEEGYGPSGTAFDTLKARGAELVITVDCGAAARIALTHAASIGLDVIVIDHH 189

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLS 240
            +  +  PA ALVNPNR DD SG GHL AAGV F+ L  + R  R+   +  +    LL 
Sbjct: 190 LMDDDMPPAAALVNPNRPDDRSGCGHLAAAGVTFVFLAALNREGRRRGTITPDNEPSLLD 249

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            +DL AL T+CDVVPL G+NRA   +GL       + GL+ L E   +    +  + G++
Sbjct: 250 WIDLAALGTICDVVPLTGVNRAITAQGLKAMSGWRHLGLRCLAETSGVDGEASTYHAGFL 309

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGR+G ++LG+ LL ++D      +A +LD LN  RR +E+ +LE A A++  
Sbjct: 310 IGPRINAGGRVGRADLGATLLTTEDETLARRIAGELDGLNSERRAIEADVLEAASAQLDG 369

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---KGIGSGRSIE 417
           Q  D    ++++  G+ WHPG++G++A RLKE+F +P   I  + +     G GSGRS+ 
Sbjct: 370 QSAD---RAILIAAGEGWHPGVIGVVAGRLKERFDKPVIVIGIDREARPPVGKGSGRSVP 426

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
           G ++G  ++ A E G+L  GGGHAMA GL+++      L  F  +     + A       
Sbjct: 427 GVNLGGAIAAAREAGLLTSGGGHAMAGGLSMDPDRITELVAFLDERLAPELAAAADDMAL 486

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
           K DGVL AS V++ L  MLE A P+G GN  P FA P+ ++   + V   H++ T    D
Sbjct: 487 KADGVLTASGVSLDLARMLERAAPFGQGNAEPRFALPDMRVSFAKRVGTDHVRFTLSDPD 546

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              +  I FR   TP+GE L+ +     H  G L ++ W+G +R QL + D S  
Sbjct: 547 GRRVDGICFRCADTPIGEALLAAGPGLFHAFGRLKLDAWQGRERVQLHLEDLSTA 601


>gi|328544275|ref|YP_004304384.1| Single-stranded-DNA-specific exonuclease RecJ [polymorphum gilvum
           SL003B-26A1]
 gi|326414017|gb|ADZ71080.1| Single-stranded-DNA-specific exonuclease RecJ [Polymorphum gilvum
           SL003B-26A1]
          Length = 602

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 286/591 (48%), Positives = 376/591 (63%), Gaps = 3/591 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
             +  LGV  S SG  W           ALAI Q+  +PD++ARVL  R+V+   A+ FL
Sbjct: 6   TARPVLGVTRSASGQVWRERQTPAQGLAALAIAQRLDLPDVLARVLAARDVTAADAEGFL 65

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+++ LMPDP  L D D+A  R+  A+    +I IFGDYDVDGA S A++ R+L    +
Sbjct: 66  DPTLKALMPDPSRLVDMDRAVARVADAVEAGTRIAIFGDYDVDGATSSAVLARYLRRLGL 125

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           +  ++IPDRI++GYGPN   +E     GA L++TVDCGSTS++A   A   G+DV+VIDH
Sbjct: 126 DPAIHIPDRIIEGYGPNGPAIEALRAAGAGLLVTVDCGSTSFEAFDVARRLGLDVVVIDH 185

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLL 239
           HQ   E     ALVNPNR DDLSGQGHL A GV FL LV + R LR+          DLL
Sbjct: 186 HQCGVELPAVSALVNPNRQDDLSGQGHLAAVGVTFLFLVGLNRELRRRGTFRRGGEPDLL 245

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
            LLDLVAL TVCDVVPL GLNRAYV KGL+    + NPGL +L +   +     A +LG+
Sbjct: 246 GLLDLVALGTVCDVVPLKGLNRAYVAKGLIAMHGRLNPGLASLADVARVGGKPAAYHLGF 305

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG++ LG+RLL  DD QE   LA  LD LN  R+ ME+ MLE+ +A+ +
Sbjct: 306 LLGPRINAGGRIGDAALGARLLTCDDPQEARGLAETLDRLNAERQAMEAVMLEEGDAQAV 365

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
            Q  D    +V+V     WHPGIVGL+A+RLKE   RP+FAI+++E GKG GSGRSI G 
Sbjct: 366 VQI-DTHDPAVLVTGSPGWHPGIVGLIASRLKEAHRRPAFAIAYDETGKGTGSGRSISGV 424

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G+ V  AV+EG+L KGGGHAMAAGLTV R     L  +F +   + V     T   KI
Sbjct: 425 DLGRAVRRAVDEGLLEKGGGHAMAAGLTVRREREADLVAYFNETLKDDVEVASATRELKI 484

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           D  L A+   + L+ +L+ AGPYGAG+P PVF FP H++    VV   H++ T  + D  
Sbjct: 485 DAALTAAGATLELMSLLDKAGPYGAGHPEPVFVFPAHRISYADVVGKGHVRATIAAPDGS 544

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +L+ I+F+    P GE L+ +RG+ MHV G L V+ W+G+ R QLR+LD +
Sbjct: 545 SLKGISFKAAERPHGEALLAARGRPMHVAGSLSVDTWQGAPRVQLRILDVA 595


>gi|163742989|ref|ZP_02150372.1| single-stranded-DNA-specific exonuclease RecJ [Phaeobacter
           gallaeciensis 2.10]
 gi|161383672|gb|EDQ08058.1| single-stranded-DNA-specific exonuclease RecJ [Phaeobacter
           gallaeciensis 2.10]
          Length = 580

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 240/588 (40%), Positives = 344/588 (58%), Gaps = 9/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S+SG RW+     E    A  + Q+ A+P  V +VL  R V    A  FL P 
Sbjct: 2   SFLGVETSLSGRRWIG-PDVEVARAAEMMEQQTALPAAVCQVLARRGVPSHEASGFLTPQ 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R +QA+   E+I +F DYDVDG +S AL++ +L+   ++A 
Sbjct: 61  LKELLPDPRRMKDMEPAAARFLQAVERRERIAVFADYDVDGGSSAALLLVWLNQVGLSAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN + M         LI+ VDCG+ S+  +  A  +G DVIV+DHH  
Sbjct: 121 LYVPDRIDEGYGPNDAAMAALAR-EHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV + R +R    +    DL++LLDL
Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKG-LGTGPDLMALLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLI  NRA V +GL V   +  PGL AL +   + S  +  +LG+++GP 
Sbjct: 237 VALATVADVAPLIEANRALVRQGLKVMATRQRPGLVALADVSRMDSAPSTYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL + D  E E +A +LD LN  RR +E+A+   A  +   +  D
Sbjct: 297 VNAGGRIGKADLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAALEQAEARGLD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I   +  +G GSGRS+ G D+G  
Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAIVIGL-DGDEGKGSGRSVSGIDLGAS 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +  A  EG+L+KGGGH MAAGLTV R           +         +     K+DG+L 
Sbjct: 413 IQRAAAEGLLIKGGGHKMAAGLTVAREQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLM 472

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI+ +E AGP+GAG P P + FP+ +++  + V  +HL+++     S  + AI
Sbjct: 473 PGAATVPLIEQIEQAGPFGAGAPAPRYGFPDLQVRFAKRVGESHLKLSLSDGLSSGIDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F  + T LG  L+   G R H  G L +N W G +  QLR+ DA+  
Sbjct: 533 CFGAFDTALGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA 580


>gi|89055493|ref|YP_510944.1| single-stranded-DNA-specific exonuclease RecJ [Jannaschia sp. CCS1]
 gi|88865042|gb|ABD55919.1| exonuclease RecJ [Jannaschia sp. CCS1]
          Length = 582

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 243/589 (41%), Positives = 340/589 (57%), Gaps = 11/589 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G RW+     +    A  + Q+  +   VA +L  R V  D    FL P+
Sbjct: 4   SFLGVEASLTGRRWIG-PSDDVERLAQTLIQRADLDPAVAAILARRGVQPDDVASFLAPA 62

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP+ L D   AA R+V+A    ++I IF DYDVDG +S AL++ +L      A 
Sbjct: 63  LRDLLPDPMSLKDMAPAATRLVEAARKGKRIAIFADYDVDGGSSAALLIWWLRALGRQAT 122

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M      G  LII VDCG+ S+  +  A  +G DV+V+DHH  
Sbjct: 123 LYIPDRIDEGYGPNDEAMAALAR-GHDLIICVDCGTLSHGPI--AAAKGADVMVLDHHLA 179

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
            +E     A+VNPNR D+    GHLCAAGVVFLVLV   R +R+        DL+ LLDL
Sbjct: 180 TAELPECVAVVNPNRQDEDGASGHLCAAGVVFLVLVDANRRMREAG--EQGPDLMGLLDL 237

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG+NRA VV+GL V  R+  PGL AL +   +    T+ +LG+++GP 
Sbjct: 238 VALATVADVAPLIGVNRALVVQGLKVMARRQRPGLVALSDVGRLDRAPTSYHLGFVLGPR 297

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG ++LG+R L +DD  E   LA +LD LN +RR +E  + E A  +   +  +
Sbjct: 298 VNAGGRIGAADLGARCLSTDDMAEAVKLAAQLDTLNTDRREIEQRVREAALVQAEARGLE 357

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++    D WHPG+VG++A+RLK+   RP+  I F+ D    GSGRS+ G D+G  
Sbjct: 358 ---APLVWAAEDGWHPGVVGIVASRLKDHTRRPAIVIGFDGDDG-KGSGRSMAGVDLGAS 413

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG++ KGGGH MAAGL++ R       +   +               ++DG + 
Sbjct: 414 IQKLAAEGLIQKGGGHKMAAGLSLSRAQLEPAMERLTELLAKQGAGTGGPADLRLDGTIM 473

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            SA    LI+ +E+AGPYGAG P P FA P  +++  R V   HL++T       T+ AI
Sbjct: 474 TSAATPELIEKIEAAGPYGAGAPAPRFALPALRIRHTRPVGETHLKLTLGDGGPVTIDAI 533

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            F    + L E L    G+ +HV G + +N+W+G  R QLR+ DA+  +
Sbjct: 534 CFDAVRSGLDE-LQAHNGRSVHVAGRVELNHWQGRTRVQLRLDDAAWAD 581


>gi|255037797|ref|YP_003088418.1| single-stranded-DNA-specific exonuclease RecJ [Dyadobacter
           fermentans DSM 18053]
 gi|254950553|gb|ACT95253.1| single-stranded-DNA-specific exonuclease RecJ [Dyadobacter
           fermentans DSM 18053]
          Length = 570

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/579 (30%), Positives = 281/579 (48%), Gaps = 18/579 (3%)

Query: 16  FRWVSLLG--QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
            RW+       E    A ++ +   +   +A +LV R +   D ++DF  P IR L  DP
Sbjct: 4   KRWIHHPPFTSEQEQVAQSLAESLKVSPSLATLLVQRGILDFDQSRDFFRPDIRHLH-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  R+++AI ++EKI+++GDYDVDG  SVAL   FL     N + YIPDR  
Sbjct: 63  FLMADMEKAVERLIKAIDSNEKILVYGDYDVDGTTSVALFYGFLKRIYPNLDYYIPDRYE 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   +E     G  LI+T+DCG  S D +  A  +GID I+ DHH+   E  PA 
Sbjct: 123 EGYGVSWQGVEWAHANGYTLIVTLDCGVKSVDKVTAALEKGIDFIICDHHRPGDELPPAA 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D L     L   GV F +L           +V     L   LDL+ ++   D
Sbjct: 183 AVLDPKREDCLYPYKELTGCGVGFKLLQAFCVK-----QVLDPETLYDYLDLLVVSIASD 237

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +VP+ G NR     GL     Q   G+KALI+   ++  +   N+ + +GP INA GRI 
Sbjct: 238 IVPITGENRVLAFYGLQRLNAQPRTGIKALIQISGMTGALDITNVVFGLGPRINAAGRIK 297

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +    RLL+S+  +E    A +++  N  RR  +S++ EQA   +         A   V
Sbjct: 298 HAKEAVRLLLSEIEEEAISFAEEINKHNSERRNFDSSITEQALFMIENDEW-FSNAKSTV 356

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WH G++G++A+R  EK+ RP+  ++    GK  GS RS+ GFD+ + +       
Sbjct: 357 LYKEDWHKGVIGIVASRCIEKYHRPTIILT-HSHGKAAGSARSVPGFDVYEAIEEC--AD 413

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH  AAGLT+   N       F +   + +      P+  +D +L   A+    
Sbjct: 414 LLEQYGGHTFAAGLTLPLDNVEAFKMRFNEIVSSRIQPDQLVPMINVDMLLELEAITPKF 473

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
            ++L   GP+G GN  PVF   N  L     ++   H++   +  +S    A+ F +   
Sbjct: 474 YNILRQMGPFGPGNMTPVFESRNMTLVGRPMLMKEKHIKFDVKQNNSAVFTAVGFGMGHF 533

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +     G+   +   L  N++R  K  QL + D  
Sbjct: 534 ----YPDIVNGRPFSICYCLEENHFRDKKTLQLSLKDIK 568


>gi|163746061|ref|ZP_02153420.1| single-stranded-DNA-specific exonuclease RecJ [Oceanibulbus
           indolifex HEL-45]
 gi|161380806|gb|EDQ05216.1| single-stranded-DNA-specific exonuclease RecJ [Oceanibulbus
           indolifex HEL-45]
          Length = 579

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 248/586 (42%), Positives = 340/586 (58%), Gaps = 10/586 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G RW+     E       + Q+  +PD V +VL  R V    A  FL P+
Sbjct: 2   SFLGVETSLTGRRWIG-PDVELTRATELLVQRAGLPDPVCQVLARRGVVDTEAAGFLAPA 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D + AA R ++A++  E+I IF DYDVDG +S AL++ +L      A 
Sbjct: 61  LRDLLPDPRSLRDMEAAATRFLEALHKRERIAIFADYDVDGGSSAALLLVWLRDMGHRAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M         LI+ VDCG+ S+  +  A  +G DVIV+DHH  
Sbjct: 121 LYIPDRIDEGYGPNDEAMSALAA-EHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A+VNPNR D+     HLCAA VVFL+LV   R LR+        DL+S+LDL
Sbjct: 178 GETLPDALAVVNPNRQDEDGTLAHLCAAAVVFLMLVEAGRQLRE--TSRKGPDLMSMLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           V LATV DV PLIG+NRA+V +GL V  R+  PGL AL +   + +  TA +LG+++GP 
Sbjct: 236 VGLATVADVAPLIGVNRAFVRQGLKVMARRARPGLAALADVARMDTAPTAYHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG+++LG+RLL + D  E   LA +LD LN +RR +E+A+   A A+   +  D
Sbjct: 296 INAGGRIGQADLGARLLATADPNEAAALAERLDQLNTDRREVEAAVRASAMAQAEDRGFD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                +    G  WHPG+VG++A+RLKE   RPS  I   EDG G GSGRSI G D+G  
Sbjct: 356 G---PLAWAAGPGWHPGVVGIVASRLKEASNRPSIVIGV-EDGIGKGSGRSISGIDLGAP 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV             +        L       + G++ 
Sbjct: 412 IQRLAAEGLLMKGGGHKMAAGLTVAEDKIEAAMKRLGELLSKQGAHLAGPADLNLCGMMM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + L +M++ AGP+GAG P P +AF + +++  + V   HL+++F       L+AI
Sbjct: 472 PGAATVELAEMVDQAGPFGAGAPAPRYAFADMQIRFAKRVGENHLKVSFGDGLGANLEAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           AF  Y  PLG  L    G R H+ G L +N +RG +  QLR+ DA+
Sbjct: 532 AFGAYDGPLGPALENHGGARFHLAGRLDINNFRGRRSVQLRLEDAA 577


>gi|114797921|ref|YP_760668.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomonas neptunium
           ATCC 15444]
 gi|114738095|gb|ABI76220.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomonas neptunium
           ATCC 15444]
          Length = 597

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 222/590 (37%), Positives = 326/590 (55%), Gaps = 9/590 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
            FLGVE S  G RW   L          +    A  D+VAR+L  R V+ + A  +L P+
Sbjct: 11  PFLGVERSAGGRRW--RLADVDETMVRRLMPAAAGSDLVARLLAGRGVTPETAPSYLAPT 68

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L PDP +  D DKAA  I+ AI   +++ +F DYDVDG  S A++ R+         
Sbjct: 69  LRDLFPDPSLFADMDKAAGIILDAIVAGKRVCVFADYDVDGGTSSAILARYFRAWGRELG 128

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDR+ +GYGP+P        +G  L+ITVDCG+ +  AL  A +  + V+V+DHH +
Sbjct: 129 LYVPDRLEEGYGPSPEAFRWLKAQGYDLVITVDCGAAAVRALDEAVSIDLPVVVLDHHLM 188

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242
                   ALVNPNR D  SGQGHL AAGVVF+    + R+ RQ N  P     D+L  L
Sbjct: 189 SGHLPETAALVNPNRPDCTSGQGHLAAAGVVFVFAAAMNRLARQRNIAPPAGLPDILPYL 248

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DL AL T+CD+ PL G+NRA+V +GL +  R  N GL+AL +   I    +  +  +++G
Sbjct: 249 DLCALGTLCDMSPLTGVNRAFVRQGLTIMSRGENVGLRALADVSGIGEIDSVYHATFLLG 308

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +NAGGR+G+  L ++LL +DD  E   LA +L  LN  RR +E+A+ ++A A+     
Sbjct: 309 PRLNAGGRVGDPWLAAKLLATDDRGEAIALAERLHTLNDERRAVEAAIQDEATAQAERAL 368

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE--DGKGIGSGRSIEGFD 420
                  +I+  G+ WHPG++G++A RLK++F  P+  I + E       GSGRS+ G +
Sbjct: 369 AANPDRGIIIAAGEGWHPGVIGIVAGRLKDRFHLPTIIIGWGEGLGPVAKGSGRSVTGVN 428

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +S A  EGI++ GGGHAMA GL++E        D+                   ID
Sbjct: 429 LGDAISAAAREGIILSGGGHAMAGGLSLEPHQIAAFDDWMVAHMAQFTAERDAALDLHID 488

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
            VL+  +    L D++ + GP+G G P PVFA  +     +R +   HL+ T E+     
Sbjct: 489 AVLSPGSATTDLYDLIAALGPFGMGAPEPVFAMTDVMPTGVRRIGANHLRFTAENNTGR- 547

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           ++ IA+RV   P+G+ L    G+R+ + G L  + W G +R QL +LDA+
Sbjct: 548 IECIAWRVADEPMGDLLR--TGQRVGLAGRLKSDQWNGRRRVQLEILDAA 595


>gi|114771174|ref|ZP_01448594.1| single-stranded-DNA-specific exonuclease RecJ [alpha
           proteobacterium HTCC2255]
 gi|114548099|gb|EAU50986.1| single-stranded-DNA-specific exonuclease RecJ [alpha
           proteobacterium HTCC2255]
          Length = 582

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 231/588 (39%), Positives = 335/588 (56%), Gaps = 10/588 (1%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            +  FL VE SISG RW          +A  I Q+      +A VL    V  +  K+++
Sbjct: 1   MNDIFLDVESSISGRRWTGPNISVD-RQAEMILQETNFSSAMANVLARLGVEANQVKNYI 59

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            PS+R LMP+PL + D +KAA RI  A+ N E+I IF DYDVDGA S AL+  +L+    
Sbjct: 60  KPSLRDLMPNPLKILDMEKAASRINIAVNNHERIAIFADYDVDGATSGALLHDWLTQLGN 119

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              +Y+PDRI +GYGPN   ME   N    LII VDCG+ S++ +        D+I++DH
Sbjct: 120 IPTLYVPDRIEEGYGPNIVAMETLAN-VHDLIICVDCGTLSHETIN--KITNTDIIILDH 176

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241
           H        AYA+VNPNR D+     +LCAAGVVFL LV    I R +N      DLL++
Sbjct: 177 HLGGETLPNAYAVVNPNRQDEKGDLYYLCAAGVVFLTLVAANSIRRNNN--KSTPDLLNM 234

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVAL TV DV PLIG NRA V +GL V  ++   G+ AL +   +++  +  +LGY++
Sbjct: 235 LDLVALGTVADVAPLIGFNRALVRQGLKVMAKRERIGITALSDIAKMNNAPSPYHLGYLL 294

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGR+G+++LG RLL   +  E   +A KL+ LN  RR +E+ +  QA  +V   
Sbjct: 295 GPRINAGGRVGKADLGIRLLTCKNFDEANSIADKLNQLNDERRSIEATVQIQALEQVEKM 354

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                 +++    G+ WHPG+VG++A+R+KE   +P+  I  +E  +G GSGRSI G D+
Sbjct: 355 ---DSNSALAWAAGEGWHPGVVGIVASRIKEITNKPTVVIGLDEH-EGKGSGRSISGIDL 410

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  ++    E ++++GGGH MAAGL++ER           +   N       T   ++DG
Sbjct: 411 GSSIATLQRENLIIRGGGHKMAAGLSLEREKLEIAMSRLNELLANQGSKSFQTRELQLDG 470

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L+  A+ I L++ LE+AGP+GAG P P FA P  ++   +    +HL++        ++
Sbjct: 471 ALSLPAITIELLEQLETAGPFGAGAPGPKFALPFMRITFAKRAGESHLRLRLVDDSGASI 530

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            AIAF  + + LG+ L   +G+  HV G L ++ W G  R +L + DA
Sbjct: 531 DAIAFGAFKSDLGKTLENHKGQIFHVAGRLEIDTWNGRMRPKLNLEDA 578


>gi|163738625|ref|ZP_02146039.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Phaeobacter
           gallaeciensis BS107]
 gi|161387953|gb|EDQ12308.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Phaeobacter
           gallaeciensis BS107]
          Length = 580

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 240/588 (40%), Positives = 344/588 (58%), Gaps = 9/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S+SG RW+     E    A  + Q+ A+P  V +VL  R V    A  FL P 
Sbjct: 2   SFLGVETSLSGRRWIG-PDVEVARAAEMMEQQTALPAAVCQVLARRGVPSHEASGFLTPQ 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R +QA+   E+I +F DYDVDG +S AL++ +L+   ++A 
Sbjct: 61  LKELLPDPRRMKDMEPAAARFLQAVERCERIAVFADYDVDGGSSAALLLVWLNQVGLSAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN + M         LI+ VDCG+ S+  +  A  +G DVIV+DHH  
Sbjct: 121 LYVPDRIDEGYGPNDAAMAALAR-EHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV + R +R    +    DL++LLDL
Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKG-LGTGPDLMALLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLI  NRA V +GL V   +  PGL AL +   + S  +  +LG+++GP 
Sbjct: 237 VALATVADVAPLIEANRALVRQGLKVMATRQRPGLVALADVSRMDSAPSTYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL + D  E E +A +LD LN  RR +E+A+   A  +   +  D
Sbjct: 297 VNAGGRIGKADLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAALEQAEARGLD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I   +  +G GSGRS+ G D+G  
Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAIVIGL-DGDEGKGSGRSVSGIDLGAS 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +  A  EG+L+KGGGH MAAGLTV R           +         +     K+DG+L 
Sbjct: 413 IQRAAAEGLLIKGGGHKMAAGLTVARDQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLM 472

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI+ +E AGP+GAG P P + FP+ +++  + V  +HL+++     S  + AI
Sbjct: 473 PGAATVPLIEQIEQAGPFGAGAPAPRYGFPDLQVRFAKRVGESHLKLSLSDGLSSGIDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F  + T LG  L+   G R H  G L +N W G +  QLR+ DA+  
Sbjct: 533 CFGAFDTALGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA 580


>gi|83951463|ref|ZP_00960195.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius
           nubinhibens ISM]
 gi|83836469|gb|EAP75766.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius
           nubinhibens ISM]
          Length = 579

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 234/586 (39%), Positives = 342/586 (58%), Gaps = 10/586 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLG+  S++G RW+    +     A A+ Q   +P  + ++L  R V    A+ FL P 
Sbjct: 2   SFLGIAQSLTGRRWIGPTTEID-RLAEAMAQTTDLPRALCQILARRGVEPQEAESFLTPQ 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR L+PDP  L D + AA+R + A+   E+I IF DYDVDG +S AL++ +L      A 
Sbjct: 61  IRDLLPDPRGLKDMEAAAQRFLLAVQRGERIAIFADYDVDGGSSAALLIDWLRQMGRAAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN + M +  +    LII VDCG+ S+  +  A  +  DV+++DHH  
Sbjct: 121 LYVPDRIDEGYGPNDAAMAELAS-THDLIICVDCGTLSHGPV--AAAKDADVVILDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A+VNPNR D+     HLCAA VVFL+LV   R LR+  +     DL+++LDL
Sbjct: 178 GETLPEAVAVVNPNRQDEDGALAHLCAAAVVFLMLVEAGRQLREAGQ--KGPDLMAMLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PLIG+NRA+V +GL V  R+  PGL AL +   +  P  A +LG+++GP 
Sbjct: 236 VALATVADVAPLIGVNRAFVRQGLRVMARRERPGLVALADAARLDRPPAAYHLGFVLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +D+  E   LA +L+ LN+ RR +E+ +   A  +   +  D
Sbjct: 296 VNAGGRIGQADLGARLLSTDNPAEARALADRLEELNRERRDVEAQVRAAALDQAEARGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   GD WHPG+VG++A+RLKE   RP+  I   +  +G GSGRSI G D+G  
Sbjct: 356 ---APLVWAAGDGWHPGVVGIVASRLKEAANRPAIVIG-FDGDEGKGSGRSISGVDLGAS 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV R           +               ++DG+L 
Sbjct: 412 IQKLAAEGLLIKGGGHKMAAGLTVARDQLDAAMARLSELLDKQGAGAAGAADLRLDGLLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A    LID ++ AGP+GAG   P + F + ++   + +  +HL++ F      +L+AI
Sbjct: 472 PGAATPELIDQIDGAGPFGAGASAPRYVFSDMQISFAKRIGESHLKLRFGDGMGASLEAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +F  +  PLG  L +  G R H+ G L +N+W G +  QLR+ DA+
Sbjct: 532 SFAAFDGPLGPVLSEHGGARFHLAGRLEINHWGGRQSVQLRLEDAA 577


>gi|73667504|ref|YP_303520.1| RecJ exonuclease [Ehrlichia canis str. Jake]
 gi|72394645|gb|AAZ68922.1| exonuclease RecJ [Ehrlichia canis str. Jake]
          Length = 584

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 229/579 (39%), Positives = 335/579 (57%), Gaps = 15/579 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           ++G  W        +   L I QK  + +I ARVL  R +SI+   DFL P+++  +PDP
Sbjct: 14  VTGALW--KPHNVNLRDILTIKQKFCLSEIAARVLSTRKISIEEIHDFLYPTLKASLPDP 71

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI +AIYN EKI++FGDYDVDGA S AL+ ++L+   V   +YIPDRI 
Sbjct: 72  FHLLDMDKAVNRICEAIYNKEKIVVFGDYDVDGATSSALIKQYLTQIGVPTTIYIPDRIC 131

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN   + K    G  L ITVDCG+ +++ +  A +  +DVIVIDHH   +    A 
Sbjct: 132 EGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGMNTLPDAI 191

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250
           A++NPNRLD+ S   +L   GV FL+L+ + + L++      N   +L++ LDLVAL TV
Sbjct: 192 AVINPNRLDENSPYTYLAGVGVSFLMLIALNKTLKEKGFFTNNTEPNLINYLDLVALGTV 251

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P+IGLNRA+V +GL +   + N GLK L + + +        LG+ IGP INAGGR
Sbjct: 252 CDVMPIIGLNRAFVKQGLKIIATRQNIGLKVLSDVIGLEEKPNVYQLGFSIGPHINAGGR 311

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G ++LG+RLL S++ +E   ++ KL   N  R+ +E     +A  +  T          
Sbjct: 312 VGNASLGARLLSSNNEEEALEISEKLQNFNLERKELEHQSFNEAVEQAETLMSTNTN--- 368

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +++    WHPGI+G++A RLK+KF  PS  IS   +G G  S RSI   D+G  +  A  
Sbjct: 369 LIIVAGNWHPGIIGIVAGRLKDKFFLPSIVIS-LNNGIGKASARSIPDVDLGAAILSAKL 427

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           EGI+ +GGGHAMAAG ++       L +F  +  HNI        VFK+DGV+ ASA+N+
Sbjct: 428 EGIITEGGGHAMAAGFSINEDKIKTLYEFLSQRFHNINK----QKVFKVDGVITASAINL 483

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   L+   P+G GNP P F   N K+++  ++  +H++      +   ++ I FR   
Sbjct: 484 TLWKELQFLEPFGIGNPEPKFILTNIKIKNPEIIGDSHIRC-LIYDNKTFIKGICFRCVD 542

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T LG  L++     + + G + VNYWRG++  Q  + DA
Sbjct: 543 TELGLALLERTA--VMLLGKISVNYWRGNENIQFIIEDA 579


>gi|299133805|ref|ZP_07026999.1| single-stranded-DNA-specific exonuclease RecJ [Afipia sp. 1NLS2]
 gi|298591641|gb|EFI51842.1| single-stranded-DNA-specific exonuclease RecJ [Afipia sp. 1NLS2]
          Length = 613

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 273/602 (45%), Positives = 375/602 (62%), Gaps = 3/602 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
              AFLGV  S +G  W   L   G  +ALAI Q++ +P+++AR++  R + ID  +DFL
Sbjct: 12  TPHAFLGVARSATGKLWRDRLDARGAAQALAIVQRYQLPEMLARIIAGRGIDIDAVEDFL 71

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+IR L+PDP  +T  + AA+RI  A    E + IFGDYDVDGA S AL+   L HC +
Sbjct: 72  DPTIRKLLPDPSTVTQMEAAAKRIADAATRGEMVAIFGDYDVDGATSAALLAWHLRHCGL 131

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           +  ++IPDRI +GYGPN   +      GA+L++TVDCG+TS + L  A   G+DV+VIDH
Sbjct: 132 DPLIHIPDRIFEGYGPNVEAIRSLSLRGAKLLVTVDCGTTSLEPLAEARKLGMDVVVIDH 191

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238
           HQ   E     ALVNPNR DDLSG GHL A G+VF+ LV + R LR  N         +L
Sbjct: 192 HQCGDELPVVNALVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRVRNFWTAERPEPNL 251

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           L +L  VAL TV DV PL+GLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG
Sbjct: 252 LDMLHHVALGTVADVAPLLGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLG 311

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RRL+E A  +QAEA+ 
Sbjct: 312 FMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNVERRLIEQAAEQQAEAEA 371

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
           L       + SVIV   + WHPG+VGL+A+RLKEKF RP+FA++ E  G G GSGRSI G
Sbjct: 372 LASLGLEDKGSVIVTASEGWHPGVVGLVASRLKEKFSRPAFAVALEPGGIGTGSGRSIAG 431

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+GK V  AV EG+L+KGGGHAMAAG+T+++        + ++     V          
Sbjct: 432 VDLGKAVREAVSEGLLMKGGGHAMAAGVTLKKDRLAEFRAYLEQRLAEDVAKARHVDELF 491

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           IDG ++A AV    ++ L  AGP+G GNP P+ A P+H+L     V  AH+++  +S D 
Sbjct: 492 IDGAVSARAVTTDFVETLNRAGPFGTGNPEPMIALPSHQLVYADEVGGAHMRVRLKSGDG 551

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
             +  IAFR  G  LG  L ++RG+ +HV G L ++ W+G++R QLR+ D +  E    +
Sbjct: 552 AMVNGIAFRSVGQKLGNALAENRGQVVHVAGSLSIDRWQGAERVQLRISDIAVPEREPVS 611

Query: 599 KK 600
            +
Sbjct: 612 IR 613


>gi|126729046|ref|ZP_01744860.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata
           E-37]
 gi|126710036|gb|EBA09088.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata
           E-37]
          Length = 581

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 241/588 (40%), Positives = 342/588 (58%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           A+LGV+ S+SG RWV     E   +A  + Q+  +   +  +L    V  + A+ +L P 
Sbjct: 2   AYLGVKNSLSGRRWVG-PDVETERQAELLAQQTGLARPLCAILARLGVPPEEAQPYLEPR 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D + AA R ++A+   E+I +F DYDVDG +S AL++ +L      A 
Sbjct: 61  LRDLLPDPRSLKDMETAATRFLKAVSGRERIAVFADYDVDGGSSAALLIDWLRQMGRPAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPNP+ M     +   LI+ VDCG+ S+DA+  A  +G DV+V+DHH  
Sbjct: 121 LYVPDRIDEGYGPNPTAMAALARDH-DLIVCVDCGTLSHDAI--AAAKGADVVVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+     HLCAA VVFL+LV   R LR+        DL+ +LDL
Sbjct: 178 GETLPACVAVVNPNRQDEDGELAHLCAAAVVFLMLVEAGRQLREAG--ARGPDLMKMLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL G+NRA V +GL V  R+   GL AL +   +     + +LG+++GP 
Sbjct: 236 VALATVADVAPLRGVNRALVQQGLKVMGRRERVGLVALSDVARLERAPESYHLGFVLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL SD+  E + +A +L+ LN  RR +E+A+   A A+   +  D
Sbjct: 296 VNAGGRIGQADLGARLLASDNPAEAQAMAERLEALNAERREIEAAVRAAALAQAEARGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A +I   G+ WHPG+VG++A+RLKE  GRPS  I  +   +G GSGRS+ G D+G  
Sbjct: 356 ---APLIWAAGEGWHPGVVGIVASRLKEHTGRPSIVIGLDGA-EGKGSGRSVAGVDLGAS 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           V     EG+L+KGGGH MAAGLTV R           +               ++DGVL 
Sbjct: 412 VQRLAAEGLLIKGGGHRMAAGLTVARDRLEEAMARLSELLEKQGAGSGGASDLRVDGVLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + L++ LE AGP+G G P P F  P+ +L   +VV   HL++T        L+AI
Sbjct: 472 PGAAQVDLVEDLERAGPFGQGAPGPRFVVPDVRLSFAKVVGAGHLKITCGDGLGARLEAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F     PLG+ L+  +G+R H+ G L VN W+G    Q+R+ DA+P 
Sbjct: 532 CFNAMDGPLGQTLLNHQGRRFHLAGKLDVNTWQGRHTVQMRLDDAAPA 579


>gi|88607079|ref|YP_505704.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma
           phagocytophilum HZ]
 gi|88598142|gb|ABD43612.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma
           phagocytophilum HZ]
          Length = 585

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 215/580 (37%), Positives = 328/580 (56%), Gaps = 13/580 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           +SG  W            L I QK  + +IVA VL  + + +D  +DFL P+++LL+PDP
Sbjct: 15  VSGAVWKV--HNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDFLFPTLKLLLPDP 72

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D  KA  RI++AIY  E+I+IFGDYDVDGA S A++ R+       A +YIPDR+ 
Sbjct: 73  FHLLDMGKAVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIGATAEVYIPDRLK 132

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPNP  + K   +G  L ITVDCG+ +++ +  A   G+DVIV+DHH        A 
Sbjct: 133 EGYGPNPEALIKLRKKGCSLCITVDCGTVAHEPISVARAAGLDVIVVDHHIGSPTLPDAT 192

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATV 250
           A++NPNRLD+ S   +L   G  F++L+ + + LRQ          +L++ LDLVAL TV
Sbjct: 193 AIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNLMNYLDLVALGTV 252

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P++ LNRA+V +GL V   +GN GL+ L + + I    +  +LG+ IGP INAGGR
Sbjct: 253 CDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLGFCIGPHINAGGR 312

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           IG S+LG+RLL S+D+ E   +   L  LN  R+ +E+  L +A A+     D+ +    
Sbjct: 313 IGNSSLGARLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQAELLVDEGKN--- 369

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I++    WH G++G++A R+KE+F  P+  IS  +   G  S RS+ G DIG  V  A  
Sbjct: 370 IIMVTGNWHVGVIGIIAGRIKERFFLPTIVIS-LDGDMGKASARSVAGIDIGAAVLSAKF 428

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E ++ +GGGH MAAG +V R     L      F       +         G+L+ + ++ 
Sbjct: 429 EKLIPEGGGHEMAAGFSVHRSQIEPLYK----FFLERFKDVNIQKALHASGILSTAGISS 484

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
           AL   L+   P+G GNP P F   N ++++  ++  +H++   +     +++ + F+  G
Sbjct: 485 ALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCFKCVG 544

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T L   L+Q  G  +H+ G + +N WRG++  Q  + D +
Sbjct: 545 TELALGLLQG-GIAVHLLGKVSMNQWRGNEYVQFIIDDLA 583


>gi|148263783|ref|YP_001230489.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter
           uraniireducens Rf4]
 gi|146397283|gb|ABQ25916.1| exonuclease RecJ [Geobacter uraniireducens Rf4]
          Length = 573

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/580 (32%), Positives = 287/580 (49%), Gaps = 18/580 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74
            RW              + +      ++AR+LVNR  +    A  FL  S+     DP +
Sbjct: 7   KRWKVR--DCDPVDVERLVKGGVASPLLARLLVNRAVIEPAAASRFLTSSLAQFH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   ++A  R+  A+   EK+ + GDYDVDG  SVAL++ F     ++A  YIPDR+VDG
Sbjct: 64  LLGMERAVDRLAAAVKKGEKVCVHGDYDVDGITSVALLLSFFRSIGLDAIYYIPDRLVDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   + +    GAQ+++TVDCG T+       +  GID+IV DHH        AYA+
Sbjct: 124 YGLSADGVARAATLGAQVMVTVDCGITAVAEATLCSAAGIDLIVTDHHMPGDSLPEAYAV 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252
           +NP +         L   GV F +++ +   LR++         +L   LDLVAL TV D
Sbjct: 184 INPLQPGCTFPFKSLAGVGVAFNLMIALRSRLREEGFFAGKEEPNLREYLDLVALGTVAD 243

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           VVPL   NR  V  GL        PG++AL +   ++  +    +G+ + P +NA GR+ 
Sbjct: 244 VVPLTDENRILVKHGLRELTNSQRPGVQALKDVAGVNGDVGCGAVGFRLAPRLNAAGRLE 303

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            + +G  LL+  D ++ E LA  LD  N  R+ +E  +L  A A V  +   ++    IV
Sbjct: 304 NAAMGVELLLCGDRKKAEPLAAALDASNAERQAVEREILNDALAMV-KETPALRNRKSIV 362

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A+RL + F RP+  I+ ++ G G GSGRSI  F +   ++      
Sbjct: 363 LASEAWHPGVIGIVASRLVDMFHRPTILIALKD-GNGKGSGRSIANFHLHDALNVCF--D 419

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L+K GGH  AAGL++           F + A  ++ A   TP+  IDG L AS +   L
Sbjct: 420 HLIKFGGHKHAAGLSIAEETLEAFVARFDEVAAGLLTAEDLTPLLLIDGELEASEITSEL 479

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +D LE+  P+G GNP PVF   + ++   R +   HL+M   +    +  AI F + G  
Sbjct: 480 VDGLETMKPFGMGNPEPVFLLRDAEVSDCRTLKETHLKMRL-NAGCRSFDAIGFSLAGR- 537

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  ++G R+ V     +N W G    QL + D    
Sbjct: 538 ------AAQGDRLDVVFTPAINVWNGRSSLQLTIKDLRKA 571


>gi|126738787|ref|ZP_01754483.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           SK209-2-6]
 gi|126719968|gb|EBA16675.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           SK209-2-6]
          Length = 581

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 237/588 (40%), Positives = 342/588 (58%), Gaps = 9/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G RW    G +    A  + Q+  +P  + +VL  R V    A  FL P 
Sbjct: 3   SFLGVETSLTGRRWTG-PGVDLERAAEHMQQQTGLPAPLCQVLARRGVPPHEAMGFLTPQ 61

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R ++A+   ++I IF DYDVDG +S AL++ +L    + + 
Sbjct: 62  LKELLPDPRRMKDMEAAAARFLEAVEKRQRIAIFADYDVDGGSSAALLIVWLRAMGLQST 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN + M     +   LII VDCG+ S+  +  A  +G DV+V+DHH  
Sbjct: 122 LYIPDRIDEGYGPNEAAMAGLARDH-DLIICVDCGTLSHGPI--AAAKGADVVVLDHHLG 178

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV   R  R    +    DLLSLLDL
Sbjct: 179 GETLPDCVAVVNPNRQDEEGDLGYFCAAGVVFLMLVETRRQARGKG-LGAGPDLLSLLDL 237

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL G NRA V +GL V   +  PGL AL +   + +  +A +LG+++GP 
Sbjct: 238 VALATVADVAPLTGANRALVRQGLKVMAGRQRPGLVALADVSRMDTAPSAYHLGFLLGPR 297

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +D+  E   LA +LD LN  RR +E+A+   A  +   +  D
Sbjct: 298 VNAGGRIGKADLGARLLATDNPHEAAALAERLDQLNSERRDIENAVRAAALEQAEARGFD 357

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I   + G+G GSGRS+ G D+G  
Sbjct: 358 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLND-GEGKGSGRSVTGIDLGAA 413

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLT+   N     +   +         +     K++G+L 
Sbjct: 414 IQRTAAEGLLLKGGGHKMAAGLTLAEENLEPAMERLAELLAKQGAGDLGPSDLKLEGMLM 473

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LI+ +E AGP+GAG P P +A P+ +++  + V  +HL+++        + AI
Sbjct: 474 PGAATVDLIEQIEQAGPFGAGAPAPRYALPSLEVRFAKQVGESHLKLSLSDGLGGKIDAI 533

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            F  + TPLG  L+   G R H  G L VN W G +  QLR+ DA+  
Sbjct: 534 CFGAFDTPLGSRLLNHGGARFHFAGRLEVNTWGGRQSAQLRLEDAAEA 581


>gi|89069140|ref|ZP_01156513.1| probable single-stranded DNA-specific exonuclease [Oceanicola
           granulosus HTCC2516]
 gi|89045313|gb|EAR51379.1| probable single-stranded DNA-specific exonuclease [Oceanicola
           granulosus HTCC2516]
          Length = 591

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 248/589 (42%), Positives = 342/589 (58%), Gaps = 10/589 (1%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFL V  S++G RWV            A+ Q   + D VARVLV  NV+ + A  +L+P
Sbjct: 13  EAFLSVATSVTGRRWVGPAPGAD-RLTEALVQATGLADPVARVLVRLNVAPETATAYLSP 71

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L+PDPL L D   AA R +QA+  +E+I IF DYDVDG AS AL++ +L      A
Sbjct: 72  ALRDLLPDPLTLRDMHAAAARFLQAVARNERIAIFADYDVDGGASAALLLTWLRAMGRRA 131

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M         LI+ VDCG+ S++ +  A   G DV+++DHH 
Sbjct: 132 TLYIPDRIDEGYGPNVPAMRALAR-EHDLIVCVDCGTLSHEPVAAAE--GADVVILDHHL 188

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A+VNPNR D+    GHLCAA VVFL+LV   R LR+        +LL  LD
Sbjct: 189 GGETLPAALAVVNPNRQDEDGALGHLCAAAVVFLMLVEAGRQLREQG--AKGPNLLEFLD 246

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PLIG+NRA V +GL V  ++  PGL AL +   + +  T+  LGY+ GP
Sbjct: 247 LVALATVADVAPLIGVNRALVRQGLAVMAQRRRPGLVALADVARLDTAPTSYTLGYVFGP 306

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG ++LG+RLL +DD  E   LA +LD LN  RR +E+A+ + A  +   +  
Sbjct: 307 RVNAGGRIGAADLGARLLATDDPHEAAALAQRLDALNTERREIEAAVRDAALEQAEGRGL 366

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           D     ++   G+ WHPG+VG++AARLKE  GRP+  I   +  +G GSGRS+ G D+G 
Sbjct: 367 DG---PLVWAAGEGWHPGVVGIVAARLKEATGRPAVVIGL-DGDEGKGSGRSVGGIDLGA 422

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTV R           +         +     ++DG+L
Sbjct: 423 AIHKVAGEGLLLKGGGHRMAAGLTVARDRLEPAMTRLSELLARQGAGRLGPADLRLDGLL 482

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
              A  + L + LE  GP+G G P P FAFP  ++   R V   HL++ F+      + A
Sbjct: 483 MPGAATVELCESLERCGPFGQGAPAPRFAFPGVRITQAREVGTGHLKVRFDDGFGGGIDA 542

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF     P+G+ L+Q  G R H+ G L +N W+G +R Q+++ DA+P 
Sbjct: 543 IAFNALEGPMGQCLVQHGGARFHLAGRLEINVWQGRQRVQVKLEDAAPA 591


>gi|84687257|ref|ZP_01015137.1| single-stranded-DNA-specific exonuclease RecJ [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664690|gb|EAQ11174.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales
           bacterium HTCC2654]
          Length = 582

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 237/586 (40%), Positives = 340/586 (58%), Gaps = 8/586 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFL V+ S++G RW    G E   +A A+ Q   +P  V  VL  R V  D A  FL P+
Sbjct: 3   AFLDVDNSLTGRRWTG-PGVELERQAEALVQATGLPAPVCAVLARRGVQADEAAGFLAPT 61

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR  +PDP  + D D+AA R++ A+  +E++ +F DYDVDG +S AL++ ++     +  
Sbjct: 62  IRDTLPDPRSMRDMDRAAARLLAAVDKNERVAVFADYDVDGGSSAALLIDWMRRMGRDIT 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   ME        LI+ VDCG+ S++ +  A  +G +V+V+DHH  
Sbjct: 122 LYIPDRIDEGYGPNVPAMEALAE-THSLIVCVDCGTLSHEPIAAANAKGAEVVVLDHHLG 180

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                PA A+VNPNR D++   G+LCAAGVVFL+LV   R LR+        DL+ +LDL
Sbjct: 181 GETLPPALAVVNPNRQDEVDAPGYLCAAGVVFLMLVEAGRQLREAG--RRGPDLMGMLDL 238

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G NRA V +GL +  ++G PG+ AL +   ++      +LG+++GP 
Sbjct: 239 VALATVADVAPLVGANRALVTQGLKIMAQRGRPGMVALADVARMNEAPRPYHLGFLMGPR 298

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL   D  E   LA +LD LN  RR +E  +   A  +   +  D
Sbjct: 299 VNAGGRIGKADLGARLLACTDPAEAGALAARLDQLNTERREIEEQVRLAALDQAEARGLD 358

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++    D WHPG+VG++A+RLK+   RP+  I F +  +G GSGRS+ G D+G  
Sbjct: 359 ---APLVWAAADGWHPGVVGIVASRLKDAAHRPAIVIGF-DGDEGKGSGRSVSGVDLGAS 414

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG++ KGGGH MAAGL++ R           +                +DG+L 
Sbjct: 415 IQKLAAEGLIEKGGGHKMAAGLSLSRAQLEPAMARLSELLARQGAGAGGPRDLAVDGILM 474

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
             A  + LID +E+AGP+GAG P P FAFP+ ++   + V   HL+++F       + AI
Sbjct: 475 PGAATVDLIDEIEAAGPFGAGAPAPRFAFPDVQISFAKRVGDRHLKVSFGDGLGAKIDAI 534

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           AF  Y  PLG  L    G R H+ G L +N+W+G    QLR+ DA+
Sbjct: 535 AFGAYDGPLGPALEGHGGARFHLAGRLEINHWQGRSIPQLRLEDAA 580


>gi|227821964|ref|YP_002825935.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium fredii
           NGR234]
 gi|227340964|gb|ACP25182.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium fredii
           NGR234]
          Length = 600

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 339/591 (57%), Positives = 436/591 (73%), Gaps = 1/591 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           ++AFLGVE SISG RWVS L Q G NRALAI+Q H   +++ARVL  R V +D A  FL+
Sbjct: 9   ERAFLGVERSISGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGLDDAAQFLD 68

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R LMPDP +LTDC KAA R+  AI + EK+ IFGDYDVDGAAS ALM+RFL H  + 
Sbjct: 69  PTLRALMPDPDVLTDCRKAAERLAHAIRHGEKVAIFGDYDVDGAASSALMLRFLRHFDIR 128

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           A +YIPDRI +GYGPNP  +E+ I  GA LI++VDCGSTS+++L  A  +G+DV+VIDHH
Sbjct: 129 AEIYIPDRIFEGYGPNPQAIEQLIENGAGLIVSVDCGSTSHESLAVAAERGVDVVVIDHH 188

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN-KVPLNFDLLSL 241
           QV +   P +ALVNPNR DDLSGQGHLCAAGVV+LVLV   R+LR        +FDLL+L
Sbjct: 189 QVGATLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLAGVPRAASFDLLAL 248

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVALATVCDVVPL GLNRAYVVKGL+ AR  GN GL AL+ +  I  P+T  +LG++I
Sbjct: 249 LDLVALATVCDVVPLKGLNRAYVVKGLIAARHMGNNGLAALLRKAAIGGPVTPYHLGFLI 308

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LGSRLL  DD+   E++A +LD LN+ R+ ME+AML +AEA+VL +
Sbjct: 309 GPRINAGGRIGDAALGSRLLTLDDATAAEVIASQLDELNRERQAMEAAMLAEAEAEVLAE 368

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
               + A+VI+   + WHPGIVGL+AAR+KEKF RP+FAI+F+ +G+G GSGRSI GFD+
Sbjct: 369 YGTGEGATVIITARENWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSIPGFDM 428

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G++V  AV++G+LVKGGGHAMAAGLTVER   GRL  FF++ A + V  L+     K+DG
Sbjct: 429 GRLVRAAVDDGLLVKGGGHAMAAGLTVERAKLGRLRQFFEERAESAVRDLVAVETLKLDG 488

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L A+   + L+D+L+ AGPYG+ +P PVFAFP H+L+  R V   H+++T E  D   +
Sbjct: 489 ALAAAGATLDLVDLLDQAGPYGSAHPQPVFAFPQHRLRDSRQVGANHIKVTLEGHDGSRV 548

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             IAFR   TPLG+FL+ SRG  +HV G +  + W+G++R QLRV DA+  
Sbjct: 549 DGIAFRATETPLGDFLLGSRGSTVHVAGSVSADLWQGTRRVQLRVTDAAKA 599


>gi|149914303|ref|ZP_01902834.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           AzwK-3b]
 gi|149811822|gb|EDM71655.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           AzwK-3b]
          Length = 580

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 242/589 (41%), Positives = 346/589 (58%), Gaps = 10/589 (1%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
             +LG+  S++G RW+   G E   RA A+ Q   +P  + + L    V    A+ +L P
Sbjct: 2   DTYLGIAQSLTGRRWIG-PGAEVERRAEAMAQSTGLPRPLCQTLARLGVPETEAEPYLEP 60

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           S+R L+PDP  L D + AA R + A+   E+I IF DYDVDG +S AL++ +L    + A
Sbjct: 61  SLRDLLPDPRSLRDMETAAGRFIAAVRARERIAIFADYDVDGGSSAALLIDWLRQMGLAA 120

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M +       LII VDCG+ S+DA+  A   G DV+++DHH 
Sbjct: 121 TLYIPDRIDEGYGPNEPAMAELAA-AHDLIICVDCGTLSHDAIAAAR--GADVVILDHHL 177

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+     HLCAA VVFL+LV   R LR+        DL+++LD
Sbjct: 178 GGETLPPALAVVNPNRQDETGDLAHLCAAAVVFLMLVEAGRQLRERG--ETRPDLMAMLD 235

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PL G+NRA+V +GL +   +  PGL AL +   + +  +A +LG+++GP
Sbjct: 236 LVALATVADVAPLRGVNRAFVRQGLRIMAHRDRPGLVALSDVARLDTAPSAYHLGFVMGP 295

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL + D  E   LA +LD LN  RR +E+ +   A A+   +  
Sbjct: 296 RVNAGGRIGKADLGARLLATRDISEARSLAERLDQLNSERRDIEAGVRAAALAQAEARGL 355

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           D   A ++   G+ WHPG+VG++A+RLKE   RP+  I   +  +G GSGRSI G D+G 
Sbjct: 356 D---APLVWAAGEGWHPGVVGIVASRLKELTNRPAIVIGM-DGDEGKGSGRSISGVDLGA 411

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTV R       +   +               ++DGVL
Sbjct: 412 SIQRLAAEGLLIKGGGHRMAAGLTVARDRLEAAMERLSELLDRQGSGAAGPADLRLDGVL 471

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
              A  + L++ +E+AGP+GAG P P + FP+ ++   + V  AHL++ F    S  L A
Sbjct: 472 MPGAATVELVERIEAAGPFGAGAPGPRYVFPDMQIGFAKRVGDAHLKLRFGDGLSGQLDA 531

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF  + +PLG+ LM   G R H+ G + +N W G +  QL++ DA+P 
Sbjct: 532 IAFGAFDSPLGQALMSHGGARFHLAGRIGINEWGGRRSPQLQLEDAAPA 580


>gi|85705202|ref|ZP_01036301.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. 217]
 gi|85670075|gb|EAQ24937.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. 217]
          Length = 582

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 241/592 (40%), Positives = 346/592 (58%), Gaps = 11/592 (1%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
              AFLGVE S++G RW+   G E    A A+ Q   +P  + + L    V+ + A+ +L
Sbjct: 1   MGPAFLGVEQSLTGRRWIG-PGVETDRLAEAMAQTTTLPRPLCQTLARLGVAEEDAEAYL 59

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P++R L+PDP  L D ++AA R ++A+   E+I +F DYDVDG  S AL++ +L     
Sbjct: 60  SPALRDLLPDPRSLRDMERAAARFLKAVKTGERIAVFADYDVDGGTSAALLIDWLRQMQA 119

Query: 122 N-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
               +YIPDRI +GYGPN   M         LI+ VDCG+ S++A+  A  +G DV+V+D
Sbjct: 120 PTPTLYIPDRIDEGYGPNVPAMTDLAARH-DLILCVDCGTLSHEAI--AAAKGADVVVLD 176

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HH       PA A+VNPNR D+     HLCAAGVVFL+LV   R LR         DL++
Sbjct: 177 HHLGGETLPPALAVVNPNRQDESGDLAHLCAAGVVFLMLVEAGRQLRAGG--TQGPDLMA 234

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           LLDLVALATV DV PLIG+NRA+V +GL +  R+  PGL AL +   + +   A +LG++
Sbjct: 235 LLDLVALATVADVAPLIGVNRAFVRQGLRIMARRDRPGLVALADVARMDTAPNAYHLGFL 294

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP +NAGGRIG+++LG+RLL  D++ E   LA +LD LN  RR +E+ +   A A+   
Sbjct: 295 LGPRVNAGGRIGKADLGARLLACDNASEARALAERLDHLNTERRDVEALVRAAALAQAEE 354

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +  D   A ++   G+ WHPG+VG++A+RLKE   RP+  I   +  +G GSGRS+ G D
Sbjct: 355 RGLD---APLVWAAGEGWHPGVVGIVASRLKEVSNRPAIVIGL-DGDEGKGSGRSVSGVD 410

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +     EG+L+KGGGH MAAGLTV R           +               ++D
Sbjct: 411 LGVAIQRLASEGLLIKGGGHKMAAGLTVARERLEAAMARLSELLAKQGAGQNGPADLRLD 470

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G+L   A  + L+  ++SAGP+GAG P P + FP+ ++   + ++ AHL++ F      +
Sbjct: 471 GLLMPGAATVDLVAQIDSAGPFGAGAPGPRYVFPDCQITFAKALSGAHLKLRFGDGMGAS 530

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           L AI F     PLG  L+   G R H+ G L +N W G +  QLR+ DA+P 
Sbjct: 531 LDAICFGALDGPLGPALLAHGGARFHLAGRLDINSWGGRQTVQLRLEDAAPA 582


>gi|88658434|ref|YP_507899.1| single-stranded-DNA-specific exonuclease RecJ [Ehrlichia
           chaffeensis str. Arkansas]
 gi|88599891|gb|ABD45360.1| single-stranded-DNA-specific exonuclease RecJ [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 589

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 231/579 (39%), Positives = 335/579 (57%), Gaps = 15/579 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           ++G  W            L ITQK  I +IVARVL  R V+I+   DFL P++R  +PDP
Sbjct: 14  VTGALW--KPYNVNFRDVLTITQKLGISEIVARVLSTRKVNIEEINDFLYPTLRSSLPDP 71

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA +RI  AIYN E+I+IFGDYDVDGA S AL+ ++L+   V   +YIPDRI 
Sbjct: 72  FHLLDMDKAIQRICHAIYNKERIVIFGDYDVDGATSSALIKQYLTQIGVPTTIYIPDRIC 131

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN   + K    G  L ITVDCG+ +++ +  A +  +DVIVIDHH   +    A 
Sbjct: 132 EGYGPNTQALLKLQEIGHSLCITVDCGTIAHEPISVAKSVNLDVIVIDHHMGLNTLPDAI 191

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250
           A++NPNRLD+ S   +L   GV FL+LV + + L++      N   +L++ LDLVAL TV
Sbjct: 192 AVINPNRLDENSPYTYLAGVGVSFLMLVALNKTLKEKGFFTNNNEPNLINYLDLVALGTV 251

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P+IGLNRA+V +GL +   + N GLK L + + +        LG+ IGP INAGGR
Sbjct: 252 CDVMPIIGLNRAFVKQGLKIMATRQNIGLKVLSDVIGLEDKPNTYQLGFNIGPHINAGGR 311

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G ++LG+RLL S+  +E   ++ KL   N  R+ +E     +A  +             
Sbjct: 312 VGNASLGARLLSSNSEEEALEISEKLQNFNLERKELEHRSFNEAVEQAEALISTNTN--- 368

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +++    WHPGI+G++A RLK+KF  PS  IS  + G G  S RSI   D+G  +  A  
Sbjct: 369 LIIVAGNWHPGIIGIVAGRLKDKFFLPSIVIS-LDKGIGKASARSIPDVDLGAAILSAKL 427

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           EGI+ +GGGHAMAAG +++      L +F  +  HNI        VFK+DG++ A+AVN+
Sbjct: 428 EGIITEGGGHAMAAGFSIQEDKIKTLNEFLSQRFHNINK----QKVFKVDGIITAAAVNL 483

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   L+   P+G GNP P F   N K+++  ++  +H++      +   ++ I FR   
Sbjct: 484 TLWKELQFLEPFGIGNPEPRFILTNIKIKNPEIIGDSHIRC-LIHDNKTFIKGICFRCTD 542

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T LG  L++     + + G + VNYW+G++  Q  + DA
Sbjct: 543 TELGLALLERTA--IMLLGKISVNYWKGNENIQFIIEDA 579


>gi|52081241|ref|YP_080032.1| RecJ exonuclease [Bacillus licheniformis ATCC 14580]
 gi|52786621|ref|YP_092450.1| YrvE [Bacillus licheniformis ATCC 14580]
 gi|52004452|gb|AAU24394.1| RecJ exonuclease [Bacillus licheniformis ATCC 14580]
 gi|52349123|gb|AAU41757.1| YrvE [Bacillus licheniformis ATCC 14580]
          Length = 782

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/593 (31%), Positives = 281/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW          +   +  +  I  + A +LV R     D A  FL  +      D
Sbjct: 3   ASKMRWDVQT--PDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L D +KA RRI QAI + EKIMI+GDYD DG  S  ++++ L  CS  A+ YIPDR 
Sbjct: 60  PYLLKDMEKAVRRIKQAISDQEKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN +        G  LIITVD G       + A   GID+I+ DHH+       A
Sbjct: 120 KEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLIITDHHEPGPVLPDA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P +         L   GV F +   +   L +D           LLDL A+ T+ 
Sbjct: 180 YAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPED-----------LLDLCAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGR 310
           D+VPL   NR    +G+   R+   PGLKAL +           E +G+ I P +NA GR
Sbjct: 229 DLVPLHDENRQIAKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL ++D +E E LA  ++ LN+ R+ + + M E+A   +  +  D     V
Sbjct: 289 IEQADPAVYLLNTEDEREAEELAEDINALNKERQKIVNQMTEEAVQMIEEEGLDQ---PV 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L E+F RP+  +   EE G   GS RSI+GFD+ + +S   
Sbjct: 346 IVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQNLSEC- 404

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L +   + A  ++      PV  +D       ++
Sbjct: 405 -RDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDIS 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G GNP P     + K+   R +     HL++     D   L  I F 
Sbjct: 464 VDSIAEMNLLAPFGTGNPKPFVLVSDVKIDDARKIGANKNHLKLVLAD-DGNKLDCIGFY 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G ++ + G L +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGDIEEG----IVPGAKISIVGELSINEWNNRKKPQLMIKDAAVNEWQLFDLR 571


>gi|149202133|ref|ZP_01879106.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp.
           TM1035]
 gi|149144231|gb|EDM32262.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp.
           TM1035]
          Length = 582

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 244/592 (41%), Positives = 348/592 (58%), Gaps = 11/592 (1%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
              AFLGVE S++  RWV   G E    A A+ Q  A+P  + + L    V  D A+ +L
Sbjct: 1   MQSAFLGVESSLTSRRWVG-PGVEADRLAEAMAQATALPRPLCQTLARLGVPEDAAEAYL 59

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P++R L+PDP  L D ++AA R ++A+   E+I IF DYDVDG  S AL++ +L     
Sbjct: 60  TPTLRDLLPDPRALRDMEQAAARFLKALRGGERIAIFADYDVDGGTSAALLIDWLRQMRA 119

Query: 122 N-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
               +YIPDRI +GYGPN   M         LI+ VDCG+ S++A+  AT  G DV+V+D
Sbjct: 120 PSPTLYIPDRIDEGYGPNVPAMSDLAARH-DLIVCVDCGTLSHEAIAAAT--GADVVVLD 176

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HH       PA+A+VNPNR D+     HLCAAGVVFL+LV   R LR         DL++
Sbjct: 177 HHLGGETLPPAHAVVNPNRQDESGDLAHLCAAGVVFLMLVEAGRQLRDSG--AQGPDLMA 234

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATV DV PLIG+NRA+V +GL V   +  PGL AL +   + +   A +LG++
Sbjct: 235 MLDLVALATVADVAPLIGVNRAFVRQGLRVMATRARPGLVALADVARMDTAPNAYHLGFL 294

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP +NAGGRIG+++LG+RLL  D+  E   +A +LD LN  RR +E+ + + A A+   
Sbjct: 295 LGPRVNAGGRIGKADLGARLLACDNPAEARAMAERLDQLNTERREVEAQVRDAALAQAEA 354

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +  D   A ++   G+ WHPG+VG++A+RLKE+  RP+  I   +  +G GSGRS+ G D
Sbjct: 355 RGLD---APLVWAAGEGWHPGVVGIVASRLKERANRPAIVIGL-DGDEGKGSGRSVSGVD 410

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +     EG+L+KGGGH MAAGLTV R           +        +      ++D
Sbjct: 411 LGAAIQRLASEGLLIKGGGHKMAAGLTVARERLEAAMARLSELLAKQGAGVGGAADLRLD 470

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G+L   A  + L++ +E+AGP+GAG P P + FP+ ++   + ++ AHL++ F      +
Sbjct: 471 GLLMPGAAAVELVEQIEAAGPFGAGAPGPRYVFPDCQITFAKALSGAHLKLRFGDGMGAS 530

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           L AIAF     PLG  L+   G R H+ G L +N W G +  QLR+ DA+P 
Sbjct: 531 LDAIAFGALDGPLGPALLNHGGARFHLAGRLDLNSWGGRQTVQLRLEDAAPA 582


>gi|319644792|ref|ZP_07999025.1| YrvE protein [Bacillus sp. BT1B_CT2]
 gi|317392601|gb|EFV73395.1| YrvE protein [Bacillus sp. BT1B_CT2]
          Length = 782

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/593 (31%), Positives = 282/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW          +   +  +  I  + A +LV R     D A  FL  +      D
Sbjct: 3   ASKMRWDVQT--PDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L D +KA RRI QAI + EKIMI+GDYD DG  S  ++++ L  CS  A+ YIPDR 
Sbjct: 60  PYLLKDMEKAVRRIKQAISDQEKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN +        G  LIITVD G       + A   GID+I+ DHH+       A
Sbjct: 120 KEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLIITDHHEPGPVLPDA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P +         L   GV F +   +   L +D           LLDL A+ T+ 
Sbjct: 180 YAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPED-----------LLDLCAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGR 310
           D+VPL   NR    +G+   R+   PGLKAL +           E +G+ I P +NA GR
Sbjct: 229 DLVPLHDENRQIAKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL ++D +E E LA  ++ LN+ R+ + + M E+A   +  +  D     V
Sbjct: 289 IEQADPAVNLLNTEDEREAEELAEDINALNKERQKIVNQMTEEAVQMIEEEGLDQ---PV 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L E+F RP+  +  +E+ G   GS RSI+GFD+ + +S   
Sbjct: 346 IVVARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQNLSEC- 404

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L +   + A  ++      PV  +D       ++
Sbjct: 405 -RDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDIS 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G GNP P     + K+   R +     HL++     D   L  I F 
Sbjct: 464 VDSIAEMNLLAPFGTGNPKPFVLVSDVKIDDARKIGANKNHLKLVLAD-DGNKLDCIGFY 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G ++ + G L +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGDIEEG----IVPGAKISIVGELSINEWNNRKKPQLMIKDAAVNEWQLFDLR 571


>gi|157803729|ref|YP_001492278.1| transcription termination factor Rho [Rickettsia canadensis str.
           McKiel]
 gi|157784992|gb|ABV73493.1| transcription termination factor Rho [Rickettsia canadensis str.
           McKiel]
          Length = 585

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 222/595 (37%), Positives = 334/595 (56%), Gaps = 19/595 (3%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           M  +A      SI+G  W   +  E I   + + +   I D++AR++  R  ++   ++F
Sbjct: 1   MKPRA------SINGKIWQQKVINEDI--VMELCRSFKISDLLARIVSLRVNNLAEVENF 52

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L P I+ L+PDP  L D  KA  R V+AI N++KI IF DYDVDGA S AL+       +
Sbjct: 53  LIPKIKNLLPDPFHLLDMAKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLN 112

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           +  ++Y+PDRI +GYGP P  ++K  +   +L+ITVDCG+ +++AL+YA +  +DVIVID
Sbjct: 113 IICDIYVPDRIAEGYGPTPFAIQKIKDNSTELLITVDCGTMAHEALKYAKDISLDVIVID 172

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDL 238
           HH        A A++NPNR+D+ S   HL A GV FL    I   L+Q N        +L
Sbjct: 173 HHIATEILPDAVAIINPNRIDEKSEYKHLAAVGVAFLFATAILSNLKQQNYFTKSPQPNL 232

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           ++ LDLVAL TVCD+V L G+NRA+V  GL V +++ N G+K L + V ++      +LG
Sbjct: 233 INYLDLVALGTVCDMVKLTGINRAFVASGLKVMQQRQNIGIKTLYDIVGLNEIPKCYHLG 292

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +++GP INAGGR+G+S+LG+ LL +  S E   LA +L+  N  R+L+E  M+E+A    
Sbjct: 293 FILGPRINAGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKLIELLMIEEAMEIA 352

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
            TQ    Q +S++ +  + WHPG++G++A RLKEKF +P   ++  + G G  S RSI G
Sbjct: 353 WTQ----QDSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALND-GIGKASCRSITG 407

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D G  +  A   G+L+ GGGH MAAG TV       L +F        +  L      +
Sbjct: 408 IDFGAEIINAKNHGLLIAGGGHTMAAGFTVTAEKLQELQEFLNNAFRTSINKLENYKQVE 467

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF----E 534
            D  L+ +++N+ L++ L S  P+G GN  P+F F N  +    +V   H++       +
Sbjct: 468 YDLDLSLNSINLHLMEELSSIEPFGQGNHEPIFKFDNLFVLKAYIVGSKHIKALLVHNTQ 527

Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              S+ L AIAF   GT   E L+  + K +   G L  + W+ +   QL + D 
Sbjct: 528 GSGSKALSAIAFNSVGTAFEEVLLSPKAKNIAAIGTLRTSNWQDNYTIQLIIKDI 582


>gi|146340534|ref|YP_001205582.1| putative single-stranded-DNA-specific exonuclease recJ
           [Bradyrhizobium sp. ORS278]
 gi|146193340|emb|CAL77356.1| putative single-stranded-DNA-specific exonuclease recJ
           [Bradyrhizobium sp. ORS278]
          Length = 613

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 281/592 (47%), Positives = 375/592 (63%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            QAFLGV  S++   W   L   G  RALAI Q++ +P+++ARVL  R+V++D  +DFL+
Sbjct: 13  PQAFLGVRLSLTNKLWRDRLDTRGAARALAIVQRYQLPEMLARVLAGRDVALDAVQDFLD 72

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  +T  + AA+RI  A    EK+ IFGDYDVDGA S AL+   L HC ++
Sbjct: 73  PTIRKLMPDPFTVTQMEAAAQRIADAAVKGEKVAIFGDYDVDGATSAALLAWHLRHCGLD 132

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   +    N+GA L++TVDCG+TS + L  A   G+ V+VIDHH
Sbjct: 133 PLIHIPDRIFEGYGPNTDAIRALANKGATLLVTVDCGTTSLEPLAEARRLGMSVVVIDHH 192

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239
           Q   E     ALVNPNR DDLSG G+L A G+ F+ LV + R LR            DLL
Sbjct: 193 QCGEELPEVEALVNPNRPDDLSGLGYLAAVGLTFVTLVAVNRELRSRGFWSGTRPEPDLL 252

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           S+L  VAL TV DV PLI LNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+
Sbjct: 253 SMLHHVALGTVADVAPLIALNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGF 312

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ L
Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQQAEAQAEAEAL 372

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  + +VIV   + WHPG+VGL+A+RLKEKF RP+FAI+ E  G G GSGRSI G 
Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFARPAFAIALEPGGIGTGSGRSIPGV 432

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+GK V  AVE+G+L+KGGGHAMAAG+T+ +        + +      V          I
Sbjct: 433 DLGKAVRHAVEQGLLMKGGGHAMAAGVTLRKERLAEFRAYLENALAADVAEARHVNEILI 492

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A A    L++ L  AGP+G+GNP P+ A P+H+L     V  AHL++ F+S D  
Sbjct: 493 DGAISARAATPELVNTLNRAGPFGSGNPEPIVALPSHQLVYADEVGQAHLKLRFKSGDGA 552

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T+ AIAFR  G  LG  L+Q RG+ +HV G L V+ ++G +R QLRVLD + 
Sbjct: 553 TVNAIAFRSVGQRLGNALVQHRGQVLHVAGTLTVDRYQGVERVQLRVLDVAV 604


>gi|125973861|ref|YP_001037771.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum ATCC 27405]
 gi|256004315|ref|ZP_05429297.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum DSM 2360]
 gi|281418022|ref|ZP_06249042.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum JW20]
 gi|125714086|gb|ABN52578.1| exonuclease RecJ [Clostridium thermocellum ATCC 27405]
 gi|255991749|gb|EEU01849.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum DSM 2360]
 gi|281409424|gb|EFB39682.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum JW20]
 gi|316939941|gb|ADU73975.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum DSM 1313]
          Length = 827

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/577 (33%), Positives = 306/577 (53%), Gaps = 23/577 (3%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRI 85
             +   +++K  I  ++A + ++R V      KDFLNPS+  L  DP  L D +KA  RI
Sbjct: 14  DEKVEKLSKKAGISKLLAGIFLSRGVDDPDYIKDFLNPSLDKLH-DPFELRDMEKAVDRI 72

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
           V+A+  +EKI+I+GDYDVDG  S +++  F    + +   YIPDR+ +GYG + +  EK 
Sbjct: 73  VKALRQNEKILIYGDYDVDGITSTSILYDFFRRQNADVCYYIPDRLNEGYGISMAAAEKM 132

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVDCG T+++ ++Y T+  ID+I+ DHH+ +     A A+VNP+R D    
Sbjct: 133 PEMDVDLVITVDCGITAFEEVKYITDNNIDIIITDHHECRESVPDALAVVNPHRFDCAYP 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
              L   GV + +L  + + +               LDLVAL TV DVVPL+G NR  V 
Sbjct: 193 FKELAGVGVAYKLLEALSKKMNIPGFE------RQYLDLVALGTVADVVPLLGENRIIVK 246

Query: 266 KGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324
            GL +  +  N GL++LI+   I +  I    +G+++ P INA GRIG+++   RLL +D
Sbjct: 247 YGLPMIEKTSNVGLRSLIKVAGIENKEINTFLVGFVLAPRINAAGRIGDASRAVRLLTTD 306

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384
           + +E   +A +LD  N  R+  E  ++E+A   + T   D+Q+  VIVV G+RWH G++G
Sbjct: 307 NEEEALEIAKELDEQNIFRKQNELEIMEEAVNIIET-GIDLQREKVIVVAGERWHHGVIG 365

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444
           ++++++ E++ RPS  IS + +G   GS RSIEGF++    +      +L K GGH  AA
Sbjct: 366 IVSSKITERYYRPSVLISVDGEG-AKGSARSIEGFNL--FEALVHCGKVLEKYGGHEQAA 422

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GL ++  N         ++A +++      P  KID  +    + +     L+   P+G 
Sbjct: 423 GLALKPENIDEFRRMINEYADSVLDEDDLVPRMKIDVRITKEDMTLENCKELKLLEPFGE 482

Query: 505 GNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
            NP PVF + N K+  IR V     H ++ F   +   + AI F   G  L +    S  
Sbjct: 483 SNPPPVFRYDNLKVHEIRPVGQDSRHAKIRF-DDNGTLIDAICFN--GGGLTDCYELS-- 537

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASP---VEGHH 596
             + V   + +N W G +  QL + D  P   VE  +
Sbjct: 538 DIVDVVCSMEINLWNGRENVQLNIKDIRPGLAVERQN 574


>gi|120437681|ref|YP_863367.1| single-stranded-DNA-specific exonuclease RecJ [Gramella forsetii
           KT0803]
 gi|117579831|emb|CAL68300.1| single-stranded-DNA-specific exonuclease RecJ [Gramella forsetii
           KT0803]
          Length = 564

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 170/579 (29%), Positives = 276/579 (47%), Gaps = 24/579 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           RW     +       ++ +K  I   VA++LV R +S    AK F  P ++ L  DP ++
Sbjct: 2   RWTLKP-KPDPITVNSLAEKLGIGIPVAKLLVQRGISSFKEAKKFFRPDLKDLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI +AI N E IM++GDYDVDG  SVALM  FL     N   YIPDR  +GY
Sbjct: 60  KDMDKAVDRIEKAIENEENIMVYGDYDVDGTTSVALMSSFLKFRYPNVTTYIPDRYEEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + + + YA  +GID ++ DHH+  SE   A A++
Sbjct: 120 GVSYKGIDYAADNDISLIIALDCGIKAIEKVAYAKEKGIDFVICDHHRPGSEIPNAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  I +   +         LL  LDLVA A   D+VP
Sbjct: 180 DPKREDCSYPYDELCGCGVGFKLIQAITQKNNE-----PEEVLLPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G+K+L   +     ++  ++ +++ P INA GR+    
Sbjct: 235 ITGENRILAYHGLHVINVAPRKGIKSL---LGDRKNVSITDVVFIVAPRINAAGRMKHGL 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL  +D    +  A ++++ N +RR  +  + E+A+ +++      +     VV  
Sbjct: 292 HAVNLLSEEDEAISKKYAEEIEIYNTDRRSADKTITEEAKQQII--NSKEEDRITTVVYD 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   + +   S RS++G+D+ + +    E   + 
Sbjct: 350 ENWHKGVIGIVASRLTETWYRPTLVFTKSGE-RLAASARSVKGYDVYEALEGCKEH--IE 406

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +      F++     +   + TP   ID  L+   +      +
Sbjct: 407 QFGGHKYAAGLTLLESEYLNFKKKFEEVVSETIDRNLLTPEIGIDAELDLKDITPKFYRI 466

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551
           L+   P+G GN +PVF           + V     HL+   + + S+ T   I F +   
Sbjct: 467 LKQFAPFGPGNMSPVFISRGLTDTGYGKCVGEDKTHLKCQVKQEGSKATFDVIGFNLGE- 525

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              +  +   GK+      L  N W G+ + QL++ D  
Sbjct: 526 ---KLDLIKDGKKFDAVYSLDENTWNGNTKIQLKLKDIR 561


>gi|294084054|ref|YP_003550812.1| single-stranded DNA-specific exonuclease [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663627|gb|ADE38728.1| Single-stranded DNA-specific exonuclease [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 605

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 226/600 (37%), Positives = 334/600 (55%), Gaps = 14/600 (2%)

Query: 1   MNDQAFLGVECSISGFRWV----SLLGQEGINRALAITQKH-AIPDIVARVLVNRNVSID 55
           M   A LG+  S S  RW     SL   +       + +    +P  +AR+L +R +S  
Sbjct: 1   MTPDACLGITQSASDARWDHISASLNAHDTDRYTAGLQEHFADMPLPIARILASRGISAI 60

Query: 56  YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115
             +  ++P +R L+PDP    D DKA  RI  ++   + I IFGDYDVDGA++ AL +  
Sbjct: 61  EVETLIDPRLRDLLPDPSRFKDMDKAVARIADSVEAGDAIGIFGDYDVDGASAAALFVNV 120

Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175
           +    +   ++IPDR  +GYGPN + + +   +GA L++TVDCG +++  L    + G+D
Sbjct: 121 MRALHIETFVHIPDRFKEGYGPNANALTRLQEKGASLLLTVDCGISAHAPLAAVADSGMD 180

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           VIVIDHH    E   A++++NPNRLD+    GHLCAAGV F+VLV + R LRQ       
Sbjct: 181 VIVIDHHIAGPELPRAHSVINPNRLDEDGRYGHLCAAGVCFIVLVGVLRALRQRGFFEDR 240

Query: 236 --FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293
              DLL  LDLVALATVCDVVPL  LNRA+V +GL +   + N GL  L +   ++S   
Sbjct: 241 KAPDLLQQLDLVALATVCDVVPLTDLNRAFVAQGLKIMANRHNHGLARLADVAGMNSAPN 300

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
              LG++IGP INA GRIG S LG +LL      E   LA +LD +N+ RR +E  +   
Sbjct: 301 PYALGFLIGPRINAAGRIGVSELGVKLLSCQREDEAIGLAARLDEMNKERRSIEDDIRAH 360

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           A  +   Q        V+VV  + WH G++G++A RLK++F +P+  I+F  DG G GS 
Sbjct: 361 AMDRASAQS----DNHVLVVGDEAWHEGVIGIVAGRLKDRFAKPACVIAFSPDGLGKGSA 416

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RSI GF IG  +  A + G+L  GGGH MAAG ++ +        F  +   + +   I 
Sbjct: 417 RSIPGFAIGNAIIAAHQMGLLEGGGGHDMAAGFSIMKDKLAAFQAFMNQRLLDDLKGEIP 476

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531
               K+  +L+ +     + D L+  GP+G+GNP P F  P+ ++++IR+V    AH+  
Sbjct: 477 KVSHKVSALLSVAGCQPEVSDWLDKLGPFGSGNPEPRFVLPDCRIKNIRLVGDAGAHVSC 536

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +      L AIAF+  G P+G+ L Q + G+ +H+ G L  + +RG +  Q+ + D +
Sbjct: 537 RLDDGSGTALNAIAFQAGGAPIGQLLQQAADGRYLHILGKLRRDRYRGGRAMQIEIEDVA 596


>gi|329850707|ref|ZP_08265552.1| single-stranded-DNA-specific exonuclease RecJ [Asticcacaulis
           biprosthecum C19]
 gi|328841022|gb|EGF90593.1| single-stranded-DNA-specific exonuclease RecJ [Asticcacaulis
           biprosthecum C19]
          Length = 618

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 225/608 (37%), Positives = 337/608 (55%), Gaps = 18/608 (2%)

Query: 2   NDQAFLGVECSISGFRWVSLL--GQEGINRALAITQKHAI-----P---DIVARVLVNRN 51
             + +LGV  S++G  W   L   +        ITQ+  +     P   D +AR +  R 
Sbjct: 12  VSEPYLGVTASLTGRGWSERLAAQKVAPETLREITQRLGLMNVAEPAFLDPLARFIAGRG 71

Query: 52  VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL 111
           ++ D    F++P+++ L PDP    D D+A   +++A+    KI +F DYDVDGA S A 
Sbjct: 72  ITPDSLDTFIHPTLKALFPDPSSFMDMDRAVEAMLEALQAKAKICVFADYDVDGATSAAQ 131

Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171
           ++R+  H   +  +Y+PDR+ +GYGP+ +  +    +GA L+ITVDCG+ ++ AL +A  
Sbjct: 132 LVRWFRHMGHDLTVYVPDRVTEGYGPSNAAFDTLKRQGADLVITVDCGAMAHRALDHAAE 191

Query: 172 QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK 231
            G+DV+VIDHH ++ +   A A+VNPNR    S QG+L AAGVVF+VL  + R   +   
Sbjct: 192 IGLDVVVIDHHLMREDPPRALAVVNPNRPGCTSAQGNLAAAGVVFVVLAALNREAEKRGL 251

Query: 232 V--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS 289
                  DL+  LDL AL  +CDV  L G NRA   +GL +  ++ NPG+ AL++    +
Sbjct: 252 FAGRGRPDLMQWLDLSALGAICDVTALTGFNRALAAQGLKIMSQRKNPGINALMDIAGSA 311

Query: 290 SP----ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
           S     ++  + G++IGP INAGGR+G S+LG RLL +DD  E   LA +LD LN+ RR 
Sbjct: 312 SEAGKLMSTFHSGFVIGPRINAGGRVGRSDLGVRLLSTDDPVEAASLAQELDELNRLRRD 371

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
           +E+ +LEQA      Q        VIVV    WHPG++G++A RL+E++ RP   I  + 
Sbjct: 372 VETQVLEQAARVAEDQGLWPSDDPVIVVAHQDWHPGVIGIVAGRLRERWHRPVIIIGVDP 431

Query: 406 -DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
             G G GSGRS  G ++G+ V  A E G+L+ GGGHAMAAGL+VER     L  F   + 
Sbjct: 432 VSGMGKGSGRSQAGVNLGEAVGAAFESGLLLSGGGHAMAAGLSVERDRIADLRRFLNDYI 491

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
           H  V         +ID  L+  A +  L D  +   P+G GNP P+ AF + ++   + +
Sbjct: 492 HTHVAEADQVETVEIDAALSLKAASRDLFDRFDLLAPFGQGNPEPLLAFTDVRVAFAQAM 551

Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584
              H++          ++AI +R  GT LG+ L++  GK +HV   L  + + G +  QL
Sbjct: 552 KGGHVRCELLDDSGAKVKAIIWRAEGTALGDALLRPSGK-VHVLARLKADDYMGRRGIQL 610

Query: 585 RVLDASPV 592
            + D + V
Sbjct: 611 EIEDIALV 618


>gi|283856427|ref|YP_162966.2| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775429|gb|AAV89855.2| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 586

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 246/590 (41%), Positives = 348/590 (58%), Gaps = 15/590 (2%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67
           GV  S  G  W       G       + ++ + D++ R+L+ R    +    + +P I+ 
Sbjct: 7   GVSSSALGQAWQWRGQNSGF------SGENPLEDLIDRILITRGCPRESLSAYRDPKIKN 60

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
            MPDP +L D D+AA R+ +AIY  E I+IFGDYDVDGA S ALM+  L    VNA  YI
Sbjct: 61  FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDR+ +GYGP    M K   EGA L++TVDCG+ +Y+AL+ A   G+DV+V+DHHQ + +
Sbjct: 121 PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ 180

Query: 188 EIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243
              A+A+VNPNRLD+   +  GHL A GV FL+   + R LRQD          L++LLD
Sbjct: 181 LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVAL TV DV  L GLNRA+V +GL V   +  PG+ AL++   +S P T  +LG+++GP
Sbjct: 241 LVALGTVADVAALHGLNRAFVAQGLKVMAARHRPGIAALLDVAGVSRPPTTYDLGFILGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGR+G+S+LG RLL S D  E E LA+ L+  N  RR +E  + E AE     Q  
Sbjct: 301 RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQTVTEAAEGLCEEQV- 359

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
              +  V+VV G+ WHPG++G++A RLK+K+ RP   I  +E+G G GSGRS+ G D+G 
Sbjct: 360 ---ERPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            V  A + G+LV GGGHAMAAGL++++        F  +     V          ID VL
Sbjct: 417 AVLSAKQAGLLVNGGGHAMAAGLSIKKDQIEDFSTFISERVQKDVETARANKALLIDEVL 476

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +A  VN++LI+ LE+ GPYGAG P+P            R++   HL + F+ QD ++ +A
Sbjct: 477 SAGGVNLSLIEALEAGGPYGAGWPSPHIVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKA 536

Query: 544 IAFRVYGTPLGEFLMQS-RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF    TP+ + ++ + R +++ V G + +N W G K  QL + D +  
Sbjct: 537 IAFNAVETPITQMVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA 586


>gi|260752349|ref|YP_003225242.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258551712|gb|ACV74658.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 586

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 246/590 (41%), Positives = 348/590 (58%), Gaps = 15/590 (2%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67
           GV  S  G  W       G       + ++ + D++ R+L+ R    +    + +P I+ 
Sbjct: 7   GVSSSALGQAWQWRGQNSGF------SGENPLEDLIDRILITRGCPRESLSAYRDPKIKN 60

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
            MPDP +L D D+AA R+ +AIY  E I+IFGDYDVDGA S ALM+  L    VNA  YI
Sbjct: 61  FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDR+ +GYGP    M K   EGA L++TVDCG+ +Y+AL+ A   G+DV+V+DHHQ + +
Sbjct: 121 PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ 180

Query: 188 EIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243
              A+A+VNPNRLD+   +  GHL A GV FL+   + R LRQD          L++LLD
Sbjct: 181 LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVAL TV DV  L GLNRA+V +GL V   +  PG+ AL++   +S P T  +LG+++GP
Sbjct: 241 LVALGTVADVAALHGLNRAFVAQGLKVMAARHRPGIAALLDVAGVSRPPTTYDLGFILGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGR+G+S+LG RLL S D  E E LA+ L+  N  RR +E  + E AE     Q  
Sbjct: 301 RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQIVTEAAEGLCEEQV- 359

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
              +  V+VV G+ WHPG++G++A RLK+K+ RP   I  +E+G G GSGRS+ G D+G 
Sbjct: 360 ---ERPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            V  A + G+LV GGGHAMAAGL++++        F  +     V          ID VL
Sbjct: 417 AVLSAKQAGLLVNGGGHAMAAGLSIKKDQIEDFSTFISERVQKDVETARANKALLIDEVL 476

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +A  VN++LI+ LE+ GPYGAG P+P            R++   HL + F+ QD ++ +A
Sbjct: 477 SAGGVNLSLIEALEAGGPYGAGWPSPHIVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKA 536

Query: 544 IAFRVYGTPLGEFLMQS-RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF    TP+ + ++ + R +++ V G + +N W G K  QL + D +  
Sbjct: 537 IAFNAVETPITQMVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA 586


>gi|241762072|ref|ZP_04760156.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373538|gb|EER63125.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 586

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 246/590 (41%), Positives = 348/590 (58%), Gaps = 15/590 (2%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67
           GV  S  G  W       G       + ++ + D++ R+L+ R    +    + +P I+ 
Sbjct: 7   GVSSSALGQAWQWRGQNSGF------SGENPLEDLIDRILITRGCPRESLSAYRDPKIKN 60

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
            MPDP +L D D+AA R+ +AIY  E I+IFGDYDVDGA S ALM+  L    VNA  YI
Sbjct: 61  FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDR+ +GYGP    M K   EGA L++TVDCG+ +Y+AL+ A   G+DV+V+DHHQ + +
Sbjct: 121 PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ 180

Query: 188 EIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243
              A+A+VNPNRLD+   +  GHL A GV FL+   + R LRQD          L++LLD
Sbjct: 181 LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVAL TV DV  L GLNRA+V +GL V   +  PG+ AL++   +S P T  +LG+++GP
Sbjct: 241 LVALGTVADVAALHGLNRAFVAQGLKVMAARYRPGIAALLDVAGVSRPPTTYDLGFILGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGR+G+S+LG RLL S D  E E LA+ L+  N  RR +E  + E AE     Q  
Sbjct: 301 RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQTVTEAAEGLCEEQV- 359

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
              +  V+VV G+ WHPG++G++A RLK+K+ RP   I  +E+G G GSGRS+ G D+G 
Sbjct: 360 ---ERPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            V  A + G+LV GGGHAMAAGL++++        F  +     V          ID VL
Sbjct: 417 AVLSAKQAGLLVNGGGHAMAAGLSIKKNQIEDFATFISERVQKDVETARANKALLIDEVL 476

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +A  VN++LI+ LE+ GPYGAG P+P            R++   HL + F+ QD ++ +A
Sbjct: 477 SAGGVNLSLIEALEAGGPYGAGWPSPHVVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKA 536

Query: 544 IAFRVYGTPLGEFLMQS-RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           IAF    TP+ + ++ + R +++ V G + +N W G K  QL + D +  
Sbjct: 537 IAFNAVETPITQIVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA 586


>gi|15965474|ref|NP_385827.1| single-stranded-DNA-specific exonuclease protein [Sinorhizobium
           meliloti 1021]
 gi|307302595|ref|ZP_07582351.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium
           meliloti BL225C]
 gi|307318442|ref|ZP_07597876.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium
           meliloti AK83]
 gi|15074655|emb|CAC46300.1| Probable single-stranded-DNA-specific exonuclease [Sinorhizobium
           meliloti 1021]
 gi|306895782|gb|EFN26534.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium
           meliloti AK83]
 gi|306902959|gb|EFN33550.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium
           meliloti BL225C]
          Length = 600

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 335/590 (56%), Positives = 430/590 (72%), Gaps = 1/590 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S+SG RWVS L Q G NRALAI+Q H   +++ARVL  R V +D A  FL P
Sbjct: 10  RAFLGVERSVSGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGLDDAAAFLEP 69

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R LMPDP  LTD  KAA R+  AI   EK++IFGDYDVDGAAS ALM RFL H  + A
Sbjct: 70  TLRALMPDPDTLTDGRKAAERLADAIRRREKVVIFGDYDVDGAASSALMARFLRHFDITA 129

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP  +++ I+ G++LI+TVDCGSTS++AL  A  +  DV+VIDHHQ
Sbjct: 130 EIYIPDRIFEGYGPNPQAIDQLIDRGSELIVTVDCGSTSHEALAVAAERRTDVVVIDHHQ 189

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLL 242
           V S   P +ALVNPNR DDLSGQGHLCAAGVV+LVLV   R+LR        +FDLLSLL
Sbjct: 190 VGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLRGDPRAASFDLLSLL 249

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALATVCDVVPL GLNRAYVVKGL+ AR  GN GL AL+ +  I  P+T  +LG+++G
Sbjct: 250 DLVALATVCDVVPLKGLNRAYVVKGLLAARHMGNAGLAALLRKAAIGGPVTPYHLGFLLG 309

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG++ LGSRLL  D +   E +A +LD LN++R+ ME+AML +AEA+VL + 
Sbjct: 310 PRINAGGRIGDAALGSRLLTLDVAAAAEAIASQLDELNRDRQAMEAAMLAEAEAEVLAEY 369

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
              + ASVIV     WHPGIVGL+AAR+KEKF RP+FAI+F+ +G+G GSGRSI GFD+G
Sbjct: 370 GTGEGASVIVTARQNWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSINGFDMG 429

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           ++V  AV+ G+LVKGGGHAMAAGLTVER   G+L  FF++ A   +  L+     K+DG 
Sbjct: 430 RLVRAAVDNGLLVKGGGHAMAAGLTVERGKLGQLRQFFEERAETAIRDLVAVQTLKVDGA 489

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L A+   + L+D+L+ AGPYG+G+P P+FAFP H+L+  R V   H+++T E QD   ++
Sbjct: 490 LAAAGATLDLVDLLDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGSRME 549

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAFR   TPLG+FL+ +RG  +HV G +  + W+G+++ QLRV DA+  
Sbjct: 550 GIAFRAAETPLGDFLLGNRGATVHVAGSVSADLWQGTRKVQLRVTDAAKA 599


>gi|92117830|ref|YP_577559.1| single-stranded-DNA-specific exonuclease RecJ [Nitrobacter
           hamburgensis X14]
 gi|91800724|gb|ABE63099.1| exonuclease RecJ [Nitrobacter hamburgensis X14]
          Length = 613

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 278/591 (47%), Positives = 367/591 (62%), Gaps = 3/591 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
             AFLGV  S +G  W   L   G  RALAI Q+H +P+++ARV+  R V +D   DFL+
Sbjct: 13  PDAFLGVSHSATGRLWRDRLDARGAARALAIAQRHQLPEMLARVIAGRGVEVDAVADFLD 72

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  +T  + AA+R+  A    E + IFGDYDVDGA S AL+   L HC ++
Sbjct: 73  PTIRRLMPDPFTVTQMEAAAKRLADAAMRGETVAIFGDYDVDGATSAALLAWHLRHCGLD 132

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   +      GA L++TVDCG+TS + L  A  QG+ V+VIDHH
Sbjct: 133 PLIHIPDRIFEGYGPNVEAINALAARGATLLVTVDCGTTSIEPLAVAKQQGMSVVVIDHH 192

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLL 239
           Q   +     ALVNPNR DDLSG GHL A G+V + LV + R LRQ           DLL
Sbjct: 193 QCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVLVTLVALNRELRQRGFWTDERPEPDLL 252

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           ++L  VAL TV DV PL GLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+
Sbjct: 253 NMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEAWHLGF 312

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E A   QAEA+ L
Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNVERRVIEQAAEAQAEAEAL 372

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  + +VIV   + WHPG+VGL+A+RLK+KF RP+F ++ E  G G GSGRSI G 
Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKDKFSRPAFVVALEPGGIGTGSGRSIGGV 432

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+GK V  AV +G+L+KGGGHAMAAG+T+ +        + +K     V          I
Sbjct: 433 DLGKAVRQAVTDGVLLKGGGHAMAAGVTLRKERLAEFRAYMEKALAADVARSRHVRELFI 492

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A AV    +  L  AGP+GAGNP PV A P+H+L     V  AHL++ F+S D  
Sbjct: 493 DGAVSARAVTPEFVATLNRAGPFGAGNPEPVVALPSHQLIYADEVGQAHLRLRFKSGDGA 552

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +  IAFR  G PLG  L Q RG+ +HV G L V+ W+G++R QLRV D +
Sbjct: 553 IVNGIAFRAIGQPLGNVLTQMRGQPLHVAGSLAVDRWQGAERVQLRVSDVA 603


>gi|255264521|ref|ZP_05343863.1| single-stranded-DNA-specific exonuclease RecJ [Thalassiobium sp.
           R2A62]
 gi|255106856|gb|EET49530.1| single-stranded-DNA-specific exonuclease RecJ [Thalassiobium sp.
           R2A62]
          Length = 582

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 256/592 (43%), Positives = 354/592 (59%), Gaps = 10/592 (1%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           M D  FLGV  S++G RWV     +    A A+ Q   +P  + R LV R V    A  F
Sbjct: 1   MVDNGFLGVAASVTGRRWVGPTADQD-RLAQAMAQDSDLPLPICRTLVRRGVPAPEASAF 59

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L P++R LMPDP  L D ++AA R VQA+   EKI IF DYDVDG AS AL++ +L   +
Sbjct: 60  LTPALRDLMPDPRSLLDMERAALRCVQALKKREKIAIFADYDVDGGASAALLLAWLRAMN 119

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
            +A +YIPDRI +GYGPN + M+K  ++   LI+ VDCG+ S+  ++ A +   DV+V+D
Sbjct: 120 HDATLYIPDRIDEGYGPNDAAMKKLADQH-DLIVCVDCGTLSHGPIEAAQSA--DVVVLD 176

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HH       PA+++VNPNR D+     HLCAAGVVF++LV   R +RQD+      DL+S
Sbjct: 177 HHLGGETLPPAHSVVNPNRQDETGDLAHLCAAGVVFMMLVEANRQMRQDDV--KGPDLMS 234

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATV DV PLIGLNRA+V  GL V  ++   GL AL +   + +  T+ +LG++
Sbjct: 235 MLDLVALATVADVAPLIGLNRAFVRTGLQVMAQRKRIGLVALADVARMDAAPTSYHLGFL 294

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP +NAGGRIG +++G+RLL S D  E   LA +LD LN  RR +E  +   A  ++  
Sbjct: 295 LGPRVNAGGRIGAADMGARLLASTDMNEARALAERLDQLNSERREIEGQVRAAATDQMEQ 354

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +    Q A ++   GD WHPG+VG++A+R+KE+  RPS  I   +  +G GSGRS+ G D
Sbjct: 355 R---DQSAPLVWAAGDGWHPGVVGIIASRIKEQTNRPSIVIGL-DGDEGKGSGRSVSGID 410

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +     EG+L+KGGGH MAAGLTV R           +         +     K+D
Sbjct: 411 LGAAIQRVAAEGLLIKGGGHKMAAGLTVARAQLEPAMARLSELLGKQGAGELGPSDLKLD 470

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           GVL  SA    LI  LE AGP+GAG   P FAFP+ ++   + V  +HL++TF       
Sbjct: 471 GVLMPSAATPELIAQLEQAGPFGAGASAPRFAFPDVQINFAKRVGDSHLKITFGDGMGAR 530

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           ++AI+F  +  PLG  L +  G R H+ G L +N W+G  R QLR+ DA+P 
Sbjct: 531 IEAISFGAFDGPLGPTLEKHGGARFHLAGRLEINSWQGRDRVQLRLEDAAPA 582


>gi|303238658|ref|ZP_07325191.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio
           cellulolyticus CD2]
 gi|302593777|gb|EFL63492.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio
           cellulolyticus CD2]
          Length = 829

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 208/582 (35%), Positives = 315/582 (54%), Gaps = 21/582 (3%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73
              WV     E   + L I+++  I  ++A+V ++R +  +   K+FLNPS+  L  DP 
Sbjct: 4   NKLWVINKIPE--EKILKISKQCGISALLAKVFLSRGIEDEDYIKEFLNPSMNDLF-DPF 60

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D +KA  RI+ A+   EKI+IFGDYDVDG  S +++  FL     N   YIPDR  +
Sbjct: 61  LLRDMEKAVERIINAVEKKEKIIIFGDYDVDGITSTSILFDFLKKVGANVGYYIPDRKEE 120

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++K I++GA LIITVDCG T+++ +++     +D+I+ DHH+ K E   AYA
Sbjct: 121 GYGLSIIAVDKVIDDGASLIITVDCGITAFEEVRHIIESHVDIIITDHHECKEELPEAYA 180

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           L+NP R D       L   GVVF ++  +   +   ++       ++ LDLVAL TV DV
Sbjct: 181 LINPCRHDCSYPFKELAGVGVVFKLVKALCIKMGLTDES------VNYLDLVALGTVADV 234

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VPLI  NR  V  GL       N GLKALI+        IT+  +G+++ P INA GRIG
Sbjct: 235 VPLIEENRVIVKYGLQKIENTLNTGLKALIDVSGSKDKQITSYVIGFVLAPRINAAGRIG 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++   RLL +D+  E   +A +L   N  R+  E  +L +  A +  Q  D+ +  VIV
Sbjct: 295 DASRAVRLLTTDNEDEAAQIAKELSEQNTYRQETEHNILCEVMAGI-EQYVDLDKEKVIV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V G  WH GI+G++A+++ E + RP   I+  EDG G GSGRSIE F++    +      
Sbjct: 354 VWGKGWHHGIIGIVASKITESYNRPCILIT-VEDGMGKGSGRSIEEFNL--FKALMDSSS 410

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L K GGH +AAGLT++  N          +A++I+      P  KID  ++   ++   
Sbjct: 411 LLEKFGGHELAAGLTIKEDNIQEFKTKINAYANSILNDSDLVPKVKIDIEVSKEDISEES 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGT 551
           +  L+   P+GAGNP+PVFA+ N  ++ IR V    H+++TF  ++++   AI F     
Sbjct: 471 VRQLDLMSPFGAGNPSPVFAYRNLVIKDIRAVGNNKHIKITFRDKETD-FDAIGF--SRG 527

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            L E   +S    +     L +N W   +  QL + D    E
Sbjct: 528 YLAEVYSES--DILDAACSLEINSWNNRESVQLNIKDLKVCE 567


>gi|115524940|ref|YP_781851.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas
           palustris BisA53]
 gi|115518887|gb|ABJ06871.1| exonuclease RecJ [Rhodopseudomonas palustris BisA53]
          Length = 613

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 281/593 (47%), Positives = 370/593 (62%), Gaps = 3/593 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
              AFLGV  S +G  W   L   G  RALAI Q++ +P+++ARVL  RNV ID   DFL
Sbjct: 12  TPLAFLGVTRSATGRIWRDRLDIRGTARALAIAQRYQLPEMLARVLAGRNVEIDAVADFL 71

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+IR L+PDP  +T+ + AA+RI  A    E++ IFGDYDVDGA S AL+   L HC +
Sbjct: 72  DPTIRNLLPDPHTVTEMEAAAKRIADAALRGEQVAIFGDYDVDGATSAALLAWHLRHCGL 131

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           +  ++IPDRI +GYGPN   +     +GA L++TVDCG+TS + L  A   G+ V+VIDH
Sbjct: 132 DPLIHIPDRIFEGYGPNVEAVRGLAQKGATLLVTVDCGTTSLEPLAEAAKLGMAVVVIDH 191

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238
           HQ   E     ALVNPNR DDLSG GHL A G+VF+ LV + R LRQ           +L
Sbjct: 192 HQCGEELPIVEALVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRQRGFWTTERPEPNL 251

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           L +L  VAL TV DV PLIGLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG
Sbjct: 252 LDMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLG 311

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           +M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ 
Sbjct: 312 FMLGPRINAGGRIGRADLGVRLLLEGDISEAAKIAAELDRLNSERRVIEQMAEAQAEAEA 371

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
           L       + +VIV   + WHPG+VGL+A+RLKEKFGRP+FAI+ E  G G GSGRSI G
Sbjct: 372 LASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGLGTGSGRSIPG 431

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+GK V  AV +G+LVKGGGHAMAAG+T+ +        + +      V          
Sbjct: 432 VDLGKAVRQAVIDGVLVKGGGHAMAAGVTLRKDKLAEFRGYIEAALSTDVARARHANELF 491

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           IDG ++A  V      ML  AGP+G+GNP PV A P+H+L     V  AHL++ F+S D 
Sbjct: 492 IDGAVSARGVTPDFAAMLNRAGPFGSGNPEPVIALPSHQLVYADEVGQAHLRLRFKSGDG 551

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
             +  IAFR  G  LG  L ++RG+ +HV G L ++ W+GS+R QLRV D + 
Sbjct: 552 AIVNGIAFRAIGQKLGNALAENRGQLLHVAGSLAIDRWQGSERVQLRVTDVAV 604


>gi|83954144|ref|ZP_00962864.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp.
           NAS-14.1]
 gi|83841181|gb|EAP80351.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp.
           NAS-14.1]
          Length = 579

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 244/588 (41%), Positives = 347/588 (59%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGV+ S++G RWV   G E       + Q+ ++P  + +VL  R V+ + A+ FL PS
Sbjct: 2   SFLGVDASLTGRRWVG-PGVEVERATEVLVQQTSLPLALCQVLARRGVAAEEAEAFLAPS 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D +KAA R + A+   ++I +F DYDVDG +S AL++ +L      A 
Sbjct: 61  LRDLLPDPRSLRDMEKAATRFLAAVKARQRIAVFADYDVDGGSSAALLLVWLREMGCAAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN + M   +     LI+ VDCG+ S+  +  A    +  +++DHH  
Sbjct: 121 LYVPDRIDEGYGPNDAAM-AELAAAHDLIVCVDCGTLSHGPVAAAVGADV--VILDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A+VNPNR D+     HLCAA VVFL+LV   R LR+        DL++LLDL
Sbjct: 178 GETLPDALAVVNPNRQDEDGALAHLCAAAVVFLMLVEAGRQLREAG--ARGPDLMALLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           V LATV DV PLIG+NRA+V +GL V  R+   GL AL +   + +   A +LG+++GP 
Sbjct: 236 VGLATVADVAPLIGVNRAFVRQGLRVMARRDRLGLAALADVARMDTAPAAYHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG+++LG+RLL  DD  E + LA KLD+LN  RR +E+A+   A  +   +  D
Sbjct: 296 INAGGRIGQADLGARLLACDDPHEAQSLAEKLDLLNTERRDVETAVRAAALDQAEARGFD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G  WHPG+VG++A+RLKE   RPS  I F EDG G GSGRS+ G D+G  
Sbjct: 356 ---APLVWASGAGWHPGVVGIVASRLKEASNRPSIVIGF-EDGIGKGSGRSVSGIDLGAP 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV             +        L      K+DG+L 
Sbjct: 412 IQRLAAEGLLIKGGGHKMAAGLTVAEDKLDAAMARLSELLAKQGAHLAGAADLKLDGMLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            +A  + L   +E AGP+GAG P P +AF + +++  + V  +HL+++F   ++  + AI
Sbjct: 472 PAAATVELAQQVEQAGPFGAGAPAPRYAFADMQIRFAKRVGESHLKISFGDGNNTKMDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF  +  PLG  L    G R H+ G L +N WRG +  QLR+ DA+P 
Sbjct: 532 AFGAFDGPLGPALENHGGARFHLAGRLDINTWRGRQSVQLRLEDAAPA 579


>gi|83942968|ref|ZP_00955428.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp.
           EE-36]
 gi|83845976|gb|EAP83853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp.
           EE-36]
          Length = 579

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 243/588 (41%), Positives = 346/588 (58%), Gaps = 10/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGV+ S++G RWV   G E       + Q+ ++P  + +VL  R V+ + A+ FL PS
Sbjct: 2   SFLGVDASLTGRRWVG-PGVEVERATEVLVQQTSLPLALCQVLARRGVAAEEAEAFLAPS 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D +KAA R + A+   ++I +F DYDVDG +S AL++ +L      A 
Sbjct: 61  LRDLLPDPRSLRDMEKAATRFLAAVKARQRIAVFADYDVDGGSSAALLLVWLREMGCAAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +Y+PDRI +GYGPN + M +       LI+ VDCG+ S+  +  A    +  +++DHH  
Sbjct: 121 LYVPDRIDEGYGPNDAAMAELAA-SHDLIVCVDCGTLSHGPVAAAVGADV--VILDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A+VNPNR D+     HLCAA VVFL+LV   R LR+        DL++LLDL
Sbjct: 178 GETLPDALAVVNPNRQDEDGALAHLCAAAVVFLMLVEAGRQLREAG--ARGPDLMALLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           V LATV DV PLIG+NRA+V +GL V  R+   GL AL +   + +   A +LG+++GP 
Sbjct: 236 VGLATVADVAPLIGVNRAFVRQGLRVMARRDRLGLAALADVARMDTAPAAYHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG+++LG+RLL  DD  E + LA KLD+LN  RR +E+A+   A  +   +  D
Sbjct: 296 INAGGRIGQADLGARLLACDDPHEAQSLAEKLDLLNTERRDVETAVRAAALDQAEARGFD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G  WHPG+VG++A+RLKE   RPS  I F EDG G GSGRS+ G D+G  
Sbjct: 356 ---APLVWASGAGWHPGVVGIVASRLKEASNRPSIVIGF-EDGIGKGSGRSVSGIDLGAP 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV             +        L      K+DG+L 
Sbjct: 412 IQRLAAEGLLIKGGGHKMAAGLTVAEDKLDAAMARLSELLAKQGAHLAGAADLKLDGMLM 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            +   + L   +E AGP+GAG P P +AF + +++  + V  +HL+++F   ++  + AI
Sbjct: 472 PATATVELAQQVEQAGPFGAGAPAPRYAFADMQIRFAKRVGESHLKISFGDGNNTKMDAI 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF  +  PLG  L    G R H+ G L +N WRG +  QLR+ DA+P 
Sbjct: 532 AFGAFDGPLGPALENHGGARFHLAGRLDINTWRGRQSVQLRLEDAAPA 579


>gi|311069247|ref|YP_003974170.1| putative single-strand DNA-specific exonuclease [Bacillus
           atrophaeus 1942]
 gi|310869764|gb|ADP33239.1| putative single-strand DNA-specific exonuclease [Bacillus
           atrophaeus 1942]
          Length = 786

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 186/593 (31%), Positives = 283/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW      +   +  ++T++  I  +VA +LV R     + A+ FLN        D
Sbjct: 3   ASKMRWEIQRPDQD--KVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  +    +A  RI +AI   E IMI+GDYD DG  S ++M++ L   S + + YIPDR 
Sbjct: 60  PFEMKGMKEAVERIKEAISQQEPIMIYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN         +G  LIITVD G  +    + A   G+DVI+ DHH+        
Sbjct: 120 KEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKELGLDVIITDHHEPGPVLPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+V+P +         L   GV F +   +   L +D           LLDL A+ T+ 
Sbjct: 180 CAIVHPKQPGCAYPFKELAGVGVAFKLAHALLGALPED-----------LLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     G+   R    PGLKALI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLLATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+++D  E + LA ++D LN+ R+ + S M ++A   V  Q       S 
Sbjct: 289 IEQADPAVHLLMTEDEFEADELATEIDQLNKERQKIVSKMTDEAIEMVEQQGL---NGSA 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L ++F RP+  +  +E+ G   GS RSI+GFD+    S + 
Sbjct: 346 IVVAKSGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDL--FKSLSS 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L D   + A   +      PV +ID V +   + 
Sbjct: 404 CTDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G  NP P     N  L+ +R +     H++MT + Q S  L  + F 
Sbjct: 464 VESISEINLLSPFGMQNPKPHVMVENALLEDVRRIGANKNHIKMTVKDQ-SAKLDCVGFH 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G R+ + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELETG----IVPGSRISLVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571


>gi|296445858|ref|ZP_06887810.1| single-stranded-DNA-specific exonuclease RecJ [Methylosinus
           trichosporium OB3b]
 gi|296256686|gb|EFH03761.1| single-stranded-DNA-specific exonuclease RecJ [Methylosinus
           trichosporium OB3b]
          Length = 607

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 259/595 (43%), Positives = 358/595 (60%), Gaps = 6/595 (1%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           FLGVE S+SG  W   L      RA+AI+Q   + D++ARVL  R V+ + A  FL+PS+
Sbjct: 14  FLGVERSLSGRVWRPRLAAAEEGRAIAISQVLGLGDLLARVLAGRGVTQESAPAFLDPSL 73

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           R LMPDPL+L D D A  R+ +A+   E++ +FGDYDVDGAAS AL++ FL         
Sbjct: 74  RALMPDPLLLQDMDAAVDRLARAVETGEQVAVFGDYDVDGAASSALLVEFLQAAGCPPPF 133

Query: 126 -YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            +IPDRI++GYGPN   + +    GA L++T+DCG+TS++AL +A   G+D IVIDHHQ 
Sbjct: 134 LHIPDRILEGYGPNVEAISELRRRGASLLVTLDCGTTSHEALAHARALGLDAIVIDHHQA 193

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241
               +P   +VNPNR DDLSG GHLCAAGV F+ LV + R LR  +         +LL+ 
Sbjct: 194 PER-LPEAIVVNPNRADDLSGLGHLCAAGVAFMTLVALSRELRVRDFWTGVRPEPELLAA 252

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVALATV DV  L GLNRA+V KGL V + +   GL AL++   +  P    +LG+ +
Sbjct: 253 LDLVALATVADVAALHGLNRAFVTKGLAVMKGRRRVGLAALLDAARVDGPPRPMHLGFAL 312

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LG+RLL   D  E   +A +LD LN  R+ +E A LE+AEA+   Q
Sbjct: 313 GPRINAGGRIGDAALGARLLTLRDPIEAARIAAELDRLNGERQALERATLEEAEAEADRQ 372

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                + S +VV G  WHPGIVG++A+RLK+KF  P+F I  +      GSGR+  G D+
Sbjct: 373 LMRSNRLSCLVVAGADWHPGIVGIVASRLKDKFKIPAFVIGQKGQS-CSGSGRASTGVDL 431

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G+ V  AVE G++ KGGGH  AAG+T+          F        V     +    +DG
Sbjct: 432 GRAVRRAVEAGVIEKGGGHRAAAGVTLAPPRIDAFRVFMNDALEEEVERARASDALLVDG 491

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L A   +  L+  LE AGP+G+GNP P+F FP+H++    VV   H+++  +S D   L
Sbjct: 492 ALTARGADADLVRALERAGPFGSGNPEPLFVFPDHRIVDAGVVGSDHVRVRLQSGDGARL 551

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
            A+AFR  G  +GE L++ RG  +HV   +    +RG +R + R++D +  +   
Sbjct: 552 DAVAFRAVGNEIGEALLRGRGDLLHVAARIGTRVYRGVERMETRIVDLARADRRL 606


>gi|148255389|ref|YP_001239974.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1]
 gi|146407562|gb|ABQ36068.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1]
          Length = 613

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 279/592 (47%), Positives = 370/592 (62%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            QAFLGV  S++   W   L   G  RALA+ Q++ +P+++ARVL  R+V ID   DFL+
Sbjct: 13  PQAFLGVRLSLTNKLWRDRLDARGAARALAMVQRYQLPEMLARVLAGRDVDIDAVNDFLD 72

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  +T  + AA+RI  A    EK+ IFGDYDVDGA S AL+   L HC ++
Sbjct: 73  PTIRKLMPDPFTVTQMEAAAKRIADAAVRGEKVAIFGDYDVDGATSAALLAWHLRHCGLD 132

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   +     +GA L++TVDCG+TS + L  A   G+ V+VIDHH
Sbjct: 133 PLIHIPDRIFEGYGPNVEAIRALAGKGATLLVTVDCGTTSLEPLAEARRLGMSVVVIDHH 192

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239
           Q   E     ALVNPNR DDLSG G+L A G+  + LV + R LR            DLL
Sbjct: 193 QCGEELPEVEALVNPNRPDDLSGLGYLAAVGLTLVTLVAVNRELRGRGFWSGTRPEPDLL 252

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           S+L  VAL TV DV PLI LNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+
Sbjct: 253 SMLHHVALGTVADVAPLIALNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGF 312

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           M+GP INAGGRIG ++LG RLL+  D  E   +A +LD LN  RR++E     QAEA+ L
Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERRIIEQHAEAQAEAEAL 372

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  + +VIV   + WHPG+VGL+A+RLKEKF RP+FAI+ E  G G GSGRSI G 
Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFARPAFAIALEPGGIGTGSGRSIPGV 432

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+GK V  AVE+G+L+KGGGHAMAAG+T+ +        + +      V          I
Sbjct: 433 DLGKAVRHAVEQGLLIKGGGHAMAAGVTLRKERLAEFRAYLESALAADVAEARHVNEILI 492

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A A    L+  L  AGP+G+GNP P+ A P+H+L     V  AHL++ F+S D  
Sbjct: 493 DGAISARAATPELVATLNRAGPFGSGNPEPIVALPSHQLVYADEVGQAHLKLRFKSGDGA 552

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T+ AIAFR  G  LG  L+Q RG+ +HV G L V+ ++G +R QLRVLD + 
Sbjct: 553 TVNAIAFRSVGQKLGNALVQHRGQVLHVAGTLTVDRYQGVERVQLRVLDVAV 604


>gi|56417161|ref|YP_154235.1| single-stranded-DNA-specific exonuclease [Anaplasma marginale str.
           St. Maries]
 gi|222475526|ref|YP_002563943.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma
           marginale str. Florida]
 gi|255003512|ref|ZP_05278476.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma
           marginale str. Puerto Rico]
 gi|255004634|ref|ZP_05279435.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma
           marginale str. Virginia]
 gi|56388393|gb|AAV86980.1| single-stranded-DNA-specific exonuclease [Anaplasma marginale str.
           St. Maries]
 gi|222419664|gb|ACM49687.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma
           marginale str. Florida]
          Length = 586

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 231/580 (39%), Positives = 327/580 (56%), Gaps = 14/580 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           + G  W   + +        I Q+  I ++VARVL  R + I+  ++FL P++RLL+PDP
Sbjct: 17  VGGATW--RVCEVPCRDVTTIMQRFGICEVVARVLATRGIPIEEMENFLFPTLRLLLPDP 74

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI  AI N E I IFGDYDVDGA S A++ R+L    V+  +YIPDR+ 
Sbjct: 75  FHLLDMDKAVARIHDAIRNGESIAIFGDYDVDGATSSAMLCRYLRGLEVHTKIYIPDRVE 134

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN + M K   EG  L ITVDCG+ +Y+ +  A +  +DVIV+DHH   +    A 
Sbjct: 135 EGYGPNSAAMLKLREEGYSLCITVDCGTLAYEPILAARSVNLDVIVVDHHIGINTLPKAV 194

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250
           A+VNPNRLD+ S   +L A G  FL+LV + + LR+          DL++ LDLVAL TV
Sbjct: 195 AVVNPNRLDESSEHTYLSAVGTSFLLLVALQKTLREAGVFAHRSEPDLMNYLDLVALGTV 254

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P+I LNRA V  GL V   + N GL+ L + + I   I+  +LG+ IGP INAGGR
Sbjct: 255 CDVMPMIKLNRAMVRHGLKVISARSNVGLRVLGDAIGIEEKISVYHLGFSIGPHINAGGR 314

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G ++LG+ LL SDD  E E ++  L  LN  R+ +E   LE+A  +             
Sbjct: 315 VGNASLGASLLSSDDESECERISYMLLSLNAERKELEKRSLEEALHQAERLVAAGNN--- 371

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +++    WH G++G++A+RLKE+F  PS  +S      G  S RS+ G DIG  V  A  
Sbjct: 372 VIMVAGTWHVGVIGIVASRLKERFHLPSIVVSLSG-NLGKASARSVSGIDIGAAVLAAKL 430

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E ++ +GGGHAMAAG +V       L      F            V    G+L A AVN 
Sbjct: 431 EQLIPEGGGHAMAAGFSVCADKLEALY----SFFLERFKHSDIQKVSYACGILTAGAVNF 486

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   L+   P+G GNP P F   N +++   V+  +H++    S D+  ++ + F+  G
Sbjct: 487 PLWRELQMLEPFGPGNPEPRFILKNVEIRKPEVMGGSHVRC-LISGDNALVKGVCFKCIG 545

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T LG  L+Q RG+ +H+ G + VN WRG++  Q  + DA+
Sbjct: 546 TELGTTLLQ-RGRCVHLLGKISVNQWRGNEYVQFVIDDAA 584


>gi|148559790|ref|YP_001259184.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ovis ATCC
           25840]
 gi|148371047|gb|ABQ61026.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ovis ATCC
           25840]
          Length = 575

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 309/571 (54%), Positives = 387/571 (67%), Gaps = 2/571 (0%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
            LG    N ALAI Q H I D+VARVL  R VS++ A +F++P++R LMPDP  L D D 
Sbjct: 3   RLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFVDPTLRNLMPDPATLNDMDN 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           AA RI  AI   E + IFGDYDVDGA S ALM RFL H  V  ++YIPDRI +GYGPNP 
Sbjct: 63  AAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGVQHSIYIPDRIFEGYGPNPD 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-KSEEIPAYALVNPNR 199
            M +   +GA LI+TVDCG+ S  ++  A   G DV+V+DHHQV       A A+VNPNR
Sbjct: 123 AMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDHHQVGGDLPEDAVAIVNPNR 182

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
            DD+S QGHLCAAGVVFL LV + +ILR   K P   DLLS+LDLVALATVCDVVPL G+
Sbjct: 183 EDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLSMLDLVALATVCDVVPLKGV 241

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           NRA+VVKGL+VAR Q N GL AL     I  P+ A +LGY+IGP INAGGRIG++ LG+R
Sbjct: 242 NRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYLIGPRINAGGRIGDAGLGAR 301

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL  DD    + +AM+LD LNQ R+ ME+ ML +AEA+   +      ASVIV   DRWH
Sbjct: 302 LLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASLEISGGAGASVIVTASDRWH 361

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
           PGIVGLLA+RLKEK  RP+FAI+F  +G G GSGRSI G D+GK+V  AVE+G+LVKGGG
Sbjct: 362 PGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLDLGKLVRGAVEKGLLVKGGG 421

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAG+T+ER N G L  + ++ A +IV  L       IDG L AS   +AL + L+ A
Sbjct: 422 HAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSIDGALAASGATVALYEALQKA 481

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           GPYG+ +P P+ A P+H L  +R V   H+++T    D + + AIAFR     LG FL  
Sbjct: 482 GPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKRVNAIAFRAAEGDLGRFLFN 541

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + G  +HV G+L +N+W GS   Q+++LDA+
Sbjct: 542 NIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 572


>gi|298207151|ref|YP_003715330.1| single-stranded-DNA-specific exonuclease recJ [Croceibacter
           atlanticus HTCC2559]
 gi|83849786|gb|EAP87654.1| single-stranded-DNA-specific exonuclease recJ [Croceibacter
           atlanticus HTCC2559]
          Length = 568

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 171/582 (29%), Positives = 276/582 (47%), Gaps = 26/582 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW     +    +  A++   ++P+ +A +LV R ++  D AK F  PS+  L  +P +L
Sbjct: 2   RWTLKP-KPDYTKVTALSAALSVPENIAALLVQRGITNYDEAKSFFRPSLSELH-NPFLL 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI +AI  SE I+++GDYDVDG  SVALM  FL   + N   YIPDR  +GY
Sbjct: 60  KDMDVAVTRIEKAIKESENILVYGDYDVDGTTSVALMSSFLKTKTPNVATYIPDRYDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YA  +G+D I+ DHH+   +   A A++
Sbjct: 120 GVSYKGIDFAADNDITLIIALDCGIKAIDKVAYAKEKGVDFIICDHHRPGKQIPDAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  I              DLL  LDLVA A   D+VP
Sbjct: 180 DPKRDDCNYPYKELCGCGVGFKLIQAINEQSG-----GTINDLLGYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL +       G  A+I++V     +T  ++ ++I P INA GR+   N
Sbjct: 235 MTGENRILAYHGLHIINTAPRMGFYAIIKQVK-KETLTITDVVFIIAPRINAAGRMKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   D       A +++  N++RR  + ++ E+A  ++       +     VV  
Sbjct: 294 HAVTLLTETDINLAAKYAQEIETFNKDRREADKSITEEALLQINDNS--EKDCKTTVVYH 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   + K   S RS++GFD+   +        + 
Sbjct: 352 ESWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYNALEAC--SKHIE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+   ++      F+K     +   + TP   ID  L+ + +      +
Sbjct: 409 QFGGHKYAAGLTLLEKDYENFKAEFEKVVSETIDERLLTPEINIDSELDLADITPKFFRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLA--HLQMTFESQ-----DSETLQAIAFR 547
           L+   P+G GN +P F   N +     + V     HL++  +       D   + AI F 
Sbjct: 469 LKQFAPFGPGNMHPTFMTKNVRDTGYGKCVGQDNAHLKLAVQPNNVPKSDKRGIGAIGFN 528

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +      +  + +  K   +   +  N W G+   QL++ D 
Sbjct: 529 LGN----KCELTTDRKTFDIVYSIDENEWNGNVSLQLKLKDL 566


>gi|218530939|ref|YP_002421755.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           chloromethanicum CM4]
 gi|218523242|gb|ACK83827.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           chloromethanicum CM4]
          Length = 611

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 263/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            + FL V  S  G  W    G  G+   A+ +TQ + +PD++ARVLV R V    A  +L
Sbjct: 18  PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP +L D + A  R+  A+   E + IFGDYDVDGA+S AL+  +L    V
Sbjct: 78  APRLRDLMPDPSVLVDMEAAVERLAHAVRAREAVAIFGDYDVDGASSAALLADYLRALGV 137

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++ VDCG+  ++ L  A   G+DVIV+DH
Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTTLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239
           H    E     ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D          L 
Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDRVFATSAEPRLT 257

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++   +S P  A +LG+
Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG++ LG+RLL + D  E   +A +LD LN+ R+ +E+  + +AEA++ 
Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTADPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                     V++     WHPGIVGL+AARLKE+FGRP+FA + + DG  +GSGRS+ G 
Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  V  AVE G+ VKGGGHAMAAG+T+         +         V          I
Sbjct: 438 DLGGAVRSAVEAGLAVKGGGHAMAAGVTLPPGGLAAFGESLTHDLVEAVGRARAAEALLI 497

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A      L+ +++ AGP+G G P PV A P H++    +V   H++    S D +
Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRVVDAGIVGNGHVRARLVSGDGQ 557

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + AIAFR    PLG  L+   G+  HV G L  + WRG++R Q+R+ D +P
Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609


>gi|157827557|ref|YP_001496621.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii
           OSU 85-389]
 gi|157802861|gb|ABV79584.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii
           OSU 85-389]
          Length = 585

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 335/586 (57%), Gaps = 13/586 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W      E I   + + +   I D++AR++  R   I  A+DFL P I+ L+
Sbjct: 4   QASINGKIWQRRSVNEEI--VIELCRSFKISDLLARMISLRIDDIAKAEDFLMPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D  KA  R ++AI + +KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMQKAVDRAIKAILSKQKICIFADYDVDGATSSALLKNVFKDLNIVCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP PS M+K  + G +L+ITVDCG+ +++AL+YA + G+DVIVIDHH       
Sbjct: 122 RIAEGYGPTPSAMQKIKDNGTELLITVDCGAMAHEALKYAKDAGLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVAL 247
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N        +L+  LDLVAL
Sbjct: 182 EAVAIVNPNRVDETSECKHLAAVGVAFLFATGILSDLKRQNYFEKTLPPNLMKYLDLVAL 241

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCD+V LIGLNRA+V  GL +  ++ N G+K L +   ++      +LG+++GP INA
Sbjct: 242 GTVCDMVKLIGLNRAFVSSGLKIMHQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPHINA 301

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGR+G+S+LG+ LL ++ S E   LA +L+  N  R+++E  M+E+A     TQ    Q 
Sbjct: 302 GGRVGKSSLGANLLSTNCSNEALKLAEELEKHNNERKVIEMLMIEEAMEMAKTQ----QD 357

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            S++ +  + WHPG++G++A RLKEKF +P   I+  + G G  S RSI G D G  +  
Sbjct: 358 NSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIIN 416

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A  + +L+ GGGHAMAAG TV       L +F        +  L      + D  L+ S+
Sbjct: 417 AKVKNLLITGGGHAMAAGFTVAAEKIQELQEFLNNAFRISLNRLENYKQAEYDLDLSLSS 476

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF----ESQDSETLQA 543
           V++ L++ L +  P+G GN  P+F F N  +    +V   H++  F    +S  S+ LQA
Sbjct: 477 VHLPLMEELSTLEPFGQGNYEPIFKFDNLFVLKADIVGSKHIRCLFAPNKKSSSSKALQA 536

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           IAF   GT   E L+  +   + V G L  N W+ +   QL + D 
Sbjct: 537 IAFNSLGTSFEEVLLSPKAHNISVLGTLKTNNWQNNYTIQLIIKDV 582


>gi|91205110|ref|YP_537465.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii
           RML369-C]
 gi|91068654|gb|ABE04376.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii
           RML369-C]
          Length = 585

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 335/586 (57%), Gaps = 13/586 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W      E I   + + +   I D++AR++  R   I  A+DFL P I+ L+
Sbjct: 4   QASINGKIWQRRSVNEEI--VIELCRSFKISDLLARMISLRIDDIAKAEDFLMPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D  KA  R ++AI + +KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMQKAVDRAIKAILSKQKICIFADYDVDGATSSALLKNVFKDLNIVCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP PS M+K  + G +L+ITVDCG+ +++AL+YA + G+DVIVIDHH       
Sbjct: 122 RIAEGYGPTPSAMQKIKDNGTELLITVDCGAMAHEALKYAKDAGLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVAL 247
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N        +L+  LDLVAL
Sbjct: 182 EAVAIVNPNRVDETSECKHLAAVGVAFLFATGILSDLKRQNYFEKTLPPNLMKYLDLVAL 241

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCD+V LIGLNRA+V  GL +  ++ N G+K L +   ++      +LG+++GP INA
Sbjct: 242 GTVCDMVKLIGLNRAFVSSGLKIMHQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRINA 301

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGR+G+S+LG+ LL ++ S E   LA +L+  N  R+++E  M+E+A     TQ    Q 
Sbjct: 302 GGRVGKSSLGANLLSTNCSNEALKLAEELEKHNNERKVIEMLMIEEAMEMAKTQ----QD 357

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            S++ +  + WHPG++G++A RLKEKF +P   I+  + G G  S RSI G D G  +  
Sbjct: 358 NSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIIN 416

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A  + +L+ GGGHAMAAG TV       L +F        +  L      + D  L+ S+
Sbjct: 417 AKVKNLLITGGGHAMAAGFTVAAEKIQELQEFLNNAFRISLNRLENYKQAEYDLDLSLSS 476

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF----ESQDSETLQA 543
           V++ L++ L +  P+G GN  P+F F N  +    +V   H++  F    +S  S+ LQA
Sbjct: 477 VHLPLMEELSTLEPFGQGNYEPIFKFDNLFVLKADIVGSKHIRCLFAPNKKSSSSKALQA 536

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           IAF   GT   E L+  +   + V G L  N W+ +   QL + D 
Sbjct: 537 IAFNSLGTSFEEVLLSPKAHNISVLGTLKTNNWQNNYTIQLIIKDV 582


>gi|291485171|dbj|BAI86246.1| hypothetical protein BSNT_04007 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 786

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/593 (31%), Positives = 284/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW      +   +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  +    +AA RI QAI   EKIMI+GDYD DG  S ++M+  L   S   + YIPDR 
Sbjct: 60  PFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN        + G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 KEGYGPNEQAFRSIKDRGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P +         L   GV F +   +   L              LLDL A+ T+ 
Sbjct: 180 HAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     GL   RR    GLK LI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+S+DS E E LA ++D LN+ R+ M S M ++A   V  Q  D      
Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L ++F RP+  +  +E+ G   GS RSI GF++    S + 
Sbjct: 346 IVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T++  +   L     + A N +      PV ++D V +   + 
Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCSIEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G  NP P     N  L+ +R +     H++MT  ++ S+ L  + F 
Sbjct: 464 VESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQ-LDCVGFN 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G R+ + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELQEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571


>gi|321312290|ref|YP_004204577.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus subtilis
           BSn5]
 gi|320018564|gb|ADV93550.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus subtilis
           BSn5]
          Length = 786

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/593 (31%), Positives = 284/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW      +   +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  +    +AA RI QAI   EKIMI+GDYD DG  S ++M+  L   S   + YIPDR 
Sbjct: 60  PFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN        + G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 KEGYGPNEQAFRSIKDRGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P +         L   GV F +   +   L              LLDL A+ T+ 
Sbjct: 180 HAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     GL   RR    GLK LI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+S+DS E E LA ++D LN+ R+ M S M ++A   V  Q  D      
Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L ++F RP+  +  +E+ G   GS RSI GF++    S + 
Sbjct: 346 IVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T++  +   L     + A N +      PV ++D V +   + 
Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCSVEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G  NP P     N  L+ +R +     H++MT  ++ S+ L  + F 
Sbjct: 464 VESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQ-LDCVGFN 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G R+ + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELQEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571


>gi|190571037|ref|YP_001975395.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019558|ref|ZP_03335364.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357309|emb|CAQ54738.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212994980|gb|EEB55622.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 579

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/587 (39%), Positives = 341/587 (58%), Gaps = 16/587 (2%)

Query: 6   FLGVEC-SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
            L +E  SI+   W     +        + Q+  +P+I+AR+LV R V+I+ A DFL+P 
Sbjct: 2   LLDIEKRSITNALWKLQ--EADQREIFTLIQRFELPEILARILVARGVNIENAHDFLHPL 59

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR L+PDP  L D DKA   I++AI N+E I IFGDYDVDGA S AL+ R+L     ++ 
Sbjct: 60  IRSLLPDPFHLLDMDKAVSHIIKAINNNENIAIFGDYDVDGATSSALINRYLRAIGTHSI 119

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDR+ +GYG N   + +    G  L I+VDCG+ +Y  ++ A   G+D+IV+DHH  
Sbjct: 120 IYIPDRVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKVFGLDIIVVDHHLG 179

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242
             +   A A+VNPNRLD+ S   +L A GV FL++V + RILR+          DL  LL
Sbjct: 180 TEKLPSAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNRILREQGFFTNKKEPDLFDLL 239

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVAL TVCDV+ + GLNRA+V++GL V   + N GL+ L + + I    +   LG+ IG
Sbjct: 240 DLVALGTVCDVMQITGLNRAFVLQGLKVMSARKNVGLRVLFDALGILEKPSVSRLGFSIG 299

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIGE++LG+RLL +DD  +   +A+KL  LN  R+++E+  + +A  +     
Sbjct: 300 PCINAGGRIGEASLGARLLSTDDDDDAHSIALKLIDLNNARKMLENEAILEATTQAENFA 359

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
                    ++    WH GI+G++A+RLKE+F  P+  IS   +G G  S RSI G DIG
Sbjct: 360 HLGVN---FIMVSGNWHQGIIGIIASRLKEQFHLPTIVIS-LNNGIGKASCRSISGVDIG 415

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             V  A    ++++GGGH+MAAG +++      L DFF +   N         + K DG+
Sbjct: 416 AAVLSAKFTNLIIEGGGHSMAAGFSIKEDKISDLHDFFTERFANSTND----KIIKADGI 471

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + A A+N++L + L+   P+GAGNP P F     K++   V+ + H++      D+  ++
Sbjct: 472 VTAKAINLSLWNQLQRLEPFGAGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVK 530

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAFR   T LG  +MQ   K   + G + +NYW G++  Q  + D 
Sbjct: 531 AIAFRCANTELGSAIMQGNVKA--ILGKISMNYWNGNEFVQFLIEDV 575


>gi|294678579|ref|YP_003579194.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           capsulatus SB 1003]
 gi|294477399|gb|ADE86787.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           capsulatus SB 1003]
          Length = 577

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 245/587 (41%), Positives = 339/587 (57%), Gaps = 15/587 (2%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FL V+ S++G RWV    +     A A+ Q   +P  +ARVLV R V+ + A  FL P+
Sbjct: 3   SFLNVDTSLTGRRWVGPSLEAD-RLAEAMAQATHLPLPLARVLVARGVTPEAAAGFLEPT 61

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D +KAA R ++A+ + EKI IF DYDVDG +S AL++ FL    V   
Sbjct: 62  LRDLLPDPHRLKDMEKAAARFLRALRSREKIAIFADYDVDGGSSAALLICFLRAFGVTPT 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M+  +     LI+ VDCG+ S+  +  A    +  +++DHH  
Sbjct: 122 LYIPDRIDEGYGPNVPAMQA-LGREHGLIVCVDCGTLSHAPVAAAAPADV--VILDHHLG 178

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                PA A VNPNR D+    GHLCAA VVFL+LV   R LR +       DL+++LDL
Sbjct: 179 GETLPPAVACVNPNRQDEPGDLGHLCAASVVFLMLVEANRQLRAEGV--KGPDLMAMLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G+NRA V +GL V  R+  PGL AL +   +    TA +LG+++GP 
Sbjct: 237 VALATVADVAPLLGVNRALVRQGLKVMARRERPGLVALSDVARLDKAPTAYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG ++LG+RLL +D + E   LA +LD LN  RR +E+ + + A  +   +  D
Sbjct: 297 VNAGGRIGAADLGARLLSTDSAAEAAALAERLDRLNSERREIENRVRDAALTQAEARGLD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                ++   G+ WHPG+VG++AARLKE   RP+  I   E G G GS RS+ G D+G  
Sbjct: 357 G---PLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIG-LEGGLGKGSARSVAGVDLGAA 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC-DFFQKFAHNIVPALITTPVFKIDGVL 483
           V     EG+L+KGGGH MAAGLT+ R    R                       ++DG+L
Sbjct: 413 VQRVAAEGLLLKGGGHRMAAGLTLPRAVEPRWKAAECSPGRARHGGPADL----RLDGLL 468

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
              A   ALI+ L+ AGPYG   P+P FAFP   + + R +  +HL+++F       L A
Sbjct: 469 MPGAATPALIEDLDRAGPYGQAAPSPRFAFPAMAILNARRIGESHLRLSFGDGLGAKLDA 528

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAF  +  PLG  L      R H+ G L ++ W G  + QLR+ DA+
Sbjct: 529 IAFGAFDGPLGPALSAGGAGRFHLAGKLELDSWGGRSKVQLRLDDAA 575


>gi|296532974|ref|ZP_06895629.1| single-stranded-DNA-specific exonuclease RecJ [Roseomonas
           cervicalis ATCC 49957]
 gi|296266697|gb|EFH12667.1| single-stranded-DNA-specific exonuclease RecJ [Roseomonas
           cervicalis ATCC 49957]
          Length = 599

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 243/599 (40%), Positives = 335/599 (55%), Gaps = 14/599 (2%)

Query: 1   MND---QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA 57
           M D   +A LGV  S+ G RWV    Q      +AI Q+  +P+++ ++L  R V+ + A
Sbjct: 8   MTDPAGEAVLGVTRSVLGRRWVWR--QADTRIGMAIAQRLDLPELLGQLLAARGVTPEQA 65

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
             FL P++R L+PDP +L D D+AA R+ QA+   E + +FGDYDVDGA++ ALM+RFL 
Sbjct: 66  ALFLEPTLRALLPDPSVLVDMDRAAERLAQAVRAREPVAVFGDYDVDGASAGALMLRFLR 125

Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177
                   Y+PDR+ +GYGPNP  +    + GA L++ VDCG  ++ AL+ A  +  DV+
Sbjct: 126 DLGCPVRHYVPDRLKEGYGPNPGAIAALCDGGATLLVCVDCGIAAHAALEAARGR-ADVV 184

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLN 235
           V+DHH+ +       A VNPNRLD  SG  HLCAA V F+  V   R LR+         
Sbjct: 185 VLDHHKAEGPVPVVAAAVNPNRLDCGSGLKHLCAAAVSFMAAVATLRALRRSGFFEGREP 244

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
            DL  LLDLVALATVCDV+PL GLNRA+V +GL V  R   PG+ AL+E        +A 
Sbjct: 245 PDLRDLLDLVALATVCDVMPLTGLNRAFVTQGLKVMARGERPGIAALLEVAQAREAPSAY 304

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
            LG+++GP INA GRIGE +LG RLL  DD  E  ++A +LD +N+ R+ +ES +L  A 
Sbjct: 305 TLGFLLGPRINASGRIGEPDLGLRLLACDDPVEARIMAERLDAVNRRRQEVESEVLAAAF 364

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
           A+   Q        V+++ G+ WHPG+VG++A R+KEKF RP+   +   DG   GSGRS
Sbjct: 365 AQAEAQAGAGH--PVLLICGEGWHPGVVGIVAGRVKEKFNRPTCV-AGISDGLAKGSGRS 421

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           + G D+G  V  A + G+L  GGGHAMAAG +           F  +        L  + 
Sbjct: 422 VPGIDLGAAVIAARQSGLLETGGGHAMAAGFSFRLERQEEFHAFLNERLS-HAADLPGSA 480

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTF 533
              +DG L   A    L   +   GP+GAGN  PVF FP  ++     V      ++   
Sbjct: 481 DLVVDGTLRVPAATAELATQVARLGPFGAGNEEPVFIFPRVRVVRADRVGKEGNTVRAFL 540

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           E +    L+AI FR    PL E L+ SRG  +H+ G L   +W G+    L V D +P 
Sbjct: 541 EGEGGGRLKAICFRAKEGPLAELLLNSRGVPVHLAGALRAEHWNGNVSAGLHVQDGAPA 599


>gi|296331693|ref|ZP_06874162.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675348|ref|YP_003867020.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151288|gb|EFG92168.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413592|gb|ADM38711.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 786

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/593 (31%), Positives = 281/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW      +   +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  +    +A  RI QAI   E+IMI+GDYD DG  S ++M+  L   S   + YIPDR 
Sbjct: 60  PFEMKGMKEAVDRIKQAISQQEQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN          G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 KEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPNV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P +         L   GV F +   +   L              LLDL A+ T+ 
Sbjct: 180 HAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     GL   RR    GLK L++           E +G+ I P +NA GR
Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELVKLSGGDIGEANEETVGFQIAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+S+DS E E LA ++D LN+ R+ M S M ++A   V  Q  D      
Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L ++F RP+  +  +E+ G   GS RSI GF++    S + 
Sbjct: 346 IVVAKSGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L +   + A N +      PV ++D V     + 
Sbjct: 404 CRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIADNTLTEEDFIPVQEVDLVCGVEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G  NP P     N  L+ +R +     H++MT  ++ S+ L  + F 
Sbjct: 464 VESITEMNLLSPFGMLNPKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQ-LDCVGFN 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G R+ + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELEEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571


>gi|86144179|ref|ZP_01062516.1| single-stranded-DNA-specific exonuclease RecJ [Leeuwenhoekiella
           blandensis MED217]
 gi|85829441|gb|EAQ47906.1| single-stranded-DNA-specific exonuclease RecJ [Leeuwenhoekiella
           blandensis MED217]
          Length = 563

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/578 (30%), Positives = 275/578 (47%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +  A  ++ AIP+ +A++L+ R V   D AK F  PS+  L  DP ++
Sbjct: 2   RWTLKPIPE-TEKINAFAKQLAIPEKIAQLLIQRGVDTYDKAKAFFRPSLEDLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI  AI  +E I+++GDYDVDG  SVALM  +L         YIPDR  +GY
Sbjct: 60  KDMDKAVARINSAIAQNENILVYGDYDVDGTTSVALMSSYLKTLHPQVATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G + + ++   +    LI+ +DCG  + + + YA   GID I+ DHH+  +E   A A++
Sbjct: 120 GVSYTGIDYAHDNDITLIVALDCGVKAIEKVAYAKKLGIDFIICDHHRPGAEIPEAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  + +             L+  LDLVA A   D+VP
Sbjct: 180 DPKREDCDYPYKELCGCGVGFKLIQAMEQEKGL-----PVKTLVPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G++ALIE VN    +T  ++ ++I P INA GRI    
Sbjct: 235 ITGENRVLAFYGLDVINTLPRTGIQALIENVNKDE-LTITDVVFIIAPRINAAGRIKHGL 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   D +  + +A  ++  N  R+ ++  + ++A  ++  + +  +     VV  
Sbjct: 294 HAVELLTEQDYERAQEMASGIEGFNAERKDLDKVITQEALLQI--ETNKEENRKTTVVFQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   + K   S RS++GFD+   +    E   + 
Sbjct: 352 ENWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYDALEQCSEH--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +      F++   + +   +  P   ID  L    +      +
Sbjct: 409 QFGGHKYAAGLTLGEHQYEGFKQKFEEVVSSSIDERLLIPEITIDAELELDDITPKFYRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
           L    PYG GN  PVF   N       + V     HL+ +     S+T+ AI F +    
Sbjct: 469 LRQFAPYGPGNMTPVFMSKNLTDTGYGKCVGADETHLKCSVTQNGSQTIGAIGFGLG--- 525

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  +    K       L +N W G+K  QL++ D  
Sbjct: 526 -SKCDLIQHKKPFKAAYSLDINEWNGTKSIQLKLRDIQ 562


>gi|170749204|ref|YP_001755464.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655726|gb|ACB24781.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           radiotolerans JCM 2831]
          Length = 605

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 264/594 (44%), Positives = 358/594 (60%), Gaps = 4/594 (0%)

Query: 5   AFLGVECSISGFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
            FLGV  S++G RW    G     N+   + Q H +P+++ARVL  R +  + A   L P
Sbjct: 12  PFLGVAASVTGRRWQERCGGAAVQNQIAKMVQAHGLPELLARVLAGRGIVPEAAPRHLAP 71

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
            +R LMPDP  L D + A RR+V+A+   E + +FGDYDVDGAAS AL+  +L +  + A
Sbjct: 72  RLRDLMPDPDTLLDMEAAVRRLVRAVKRGETVAVFGDYDVDGAASAALLAGYLRNLGLRA 131

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            ++IPDRI +GYGPN + +     EGA L++ VDCG++ +  L+ A   G+DVIV+DHH 
Sbjct: 132 PIHIPDRITEGYGPNVAAITALAAEGATLLVCVDCGTSGHAPLEEAEKFGLDVIVLDHHA 191

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLS 240
                 PA A+VNPNRLDDLSG GHLCAAG+VFL LV + R LRQ+     +     L  
Sbjct: 192 ASEILPPARAVVNPNRLDDLSGLGHLCAAGIVFLTLVALNRALRQEGFFGSHRPEPQLTD 251

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LDLVALATV DVVPL GLNRA+V +GL V R +G  GL AL++  ++  P  A +LG++
Sbjct: 252 ALDLVALATVADVVPLTGLNRAFVTQGLTVMRHRGRTGLAALLDAASLGEPPEAWHLGFV 311

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRIG+S LG+RLL + D  E   +A  LD LN+ R+ +E+  + +AEA++  
Sbjct: 312 LGPRINAGGRIGDSALGARLLTTADPGEAARIAADLDRLNRERQAIEAQAVLEAEAEMDR 371

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                   +V+V     WHPGIVGL+A+RLKE+F RP+FA +   DG   GSGRSI G D
Sbjct: 372 ALTLDPDRTVLVTASADWHPGIVGLIASRLKERFNRPAFAFAIRPDGTATGSGRSIPGAD 431

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  V   VE  +  KGGGHAMAAG+TV   +  R            V          ID
Sbjct: 432 LGLAVRACVEARLASKGGGHAMAAGVTVRADDIPRFEAHLAMLLGASVAVARAADALLID 491

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G L+A       + +L+ AGP+G G P P+FA   H+L    VV  +H++    S+D + 
Sbjct: 492 GGLSAGGATAETVRLLQRAGPFGQGAPEPIFALGRHRLVDAGVVGSSHVRARLRSRDGQV 551

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           + AI FR    PLG  L+   G+ MHV G L  + WRG++R QLR++D +P E 
Sbjct: 552 VGAICFRAAERPLGLALLNGIGREMHVAGTLSCDRWRGAERAQLRIVDLAPSES 605


>gi|269958438|ref|YP_003328225.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma centrale
           str. Israel]
 gi|269848267|gb|ACZ48911.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma centrale
           str. Israel]
          Length = 586

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 231/580 (39%), Positives = 327/580 (56%), Gaps = 14/580 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           + G  W   + +        I Q+  I ++VARVL  R + I+  ++FL P++RLL+PDP
Sbjct: 17  VGGATW--RVSEVPCRDVTTIMQRFGICEVVARVLATRGIPIEEMENFLFPTLRLLLPDP 74

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI  AI N E I IFGDYDVDGA S A++ R+L    V+  +YIPDR+ 
Sbjct: 75  FHLLDMDKAVARIHDAIRNGESIAIFGDYDVDGATSSAMLCRYLRGLEVHTKIYIPDRVE 134

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN + M K   EG  L ITVDCG+ +Y+ +  A +  +DVIV+DHH   +    A 
Sbjct: 135 EGYGPNSAAMLKLREEGYSLCITVDCGTLAYEPILAARSVNLDVIVVDHHIGINTLPKAV 194

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250
           A+VNPNRLD+ S   +L A G  FL+LV + + LR+          DL++ LDLVAL TV
Sbjct: 195 AVVNPNRLDESSEHTYLSAVGTSFLLLVALQKTLREAGVFAHRSEPDLMNYLDLVALGTV 254

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P+I LNRA V  GL V   + N GL+ L + + I   I+  +LG+ IGP INAGGR
Sbjct: 255 CDVMPMIKLNRAMVRHGLKVISARSNVGLRVLGDAIGIEEKISVYHLGFSIGPHINAGGR 314

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G ++LG+ LL SDD  E E ++  L  LN  R+ +E   LE+A  +             
Sbjct: 315 VGNASLGASLLSSDDESECERISYMLLSLNAERKELEKRSLEEALHQAERLVAAGNN--- 371

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +++    WH G++G++A+RLKE+F  PS  +S      G  S RS+ G DIG  V  A  
Sbjct: 372 VIMVAGTWHVGVIGIVASRLKERFHLPSIVVSLSG-NLGKASARSVSGIDIGAAVLAAKL 430

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E ++ +GGGHAMAAG +V       L      F            V    G+L A AVN 
Sbjct: 431 EQLIPEGGGHAMAAGFSVCADKLEALY----SFFLERFKHSDIQKVSYACGILTAGAVNF 486

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   L+   P+G GNP P F   N +++   V+  +H++    S D+  ++ + F+  G
Sbjct: 487 PLWRELQMLEPFGPGNPEPRFILKNVEIRKPEVMGGSHVRC-LISGDNALVKGVCFKCIG 545

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T LG  L+Q RG+ +H+ G + VN WRG++  Q  + DA+
Sbjct: 546 TELGTTLLQ-RGRCVHLLGKISVNQWRGNEYVQFVMDDAA 584


>gi|58617623|ref|YP_196822.1| single-stranded-DNA-specific exonuclease recJ [Ehrlichia
           ruminantium str. Gardel]
 gi|58417235|emb|CAI28348.1| Single-stranded-DNA-specific exonuclease recJ [Ehrlichia
           ruminantium str. Gardel]
          Length = 590

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 224/591 (37%), Positives = 341/591 (57%), Gaps = 20/591 (3%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           + +  ++GV    +G  W        +   L I QK  + +IVAR+L  R ++I+   +F
Sbjct: 11  LENSGYIGV----TGALW--KPYDVNLRDILTIKQKFYLSEIVARILSARKINIEEISNF 64

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L P+++  +P+P  + D DKA  RI  AI+N E I+IFGDYDVDGA S AL+ ++LS   
Sbjct: 65  LYPTLKSSLPNPFHMLDMDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIG 124

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           V   +YIPDRI +GYGPN   + K    G  L ITVDCG+ +++ +  A +  +DVIVID
Sbjct: 125 VPTTIYIPDRICEGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVID 184

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDL 238
           HH   +    A A++NPNRLD+ S   +L   GV FL+LV +++ L++      N   +L
Sbjct: 185 HHIGINTLPDAVAVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFFKNNQEPNL 244

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
           ++ LDLVAL TVCDV+P+IGLNR +V +GL +   + N GLK L + + +        LG
Sbjct: 245 INYLDLVALGTVCDVMPIIGLNRTFVKQGLKIMTTRQNLGLKTLSDVIGLEEKPNIYQLG 304

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + IGP INAGGR+G ++LG+RLL +++ +E   ++ KL   N  R+ +E+    +A  ++
Sbjct: 305 FNIGPHINAGGRVGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQI 364

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
                       I++    WHPGI+G++A RLK+KF  PS  IS  E+G G  S RSI  
Sbjct: 365 EATIISSN----IIIATGNWHPGIIGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPD 419

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            D+G  +  A   GI+++GGGHAMAAG +++      L +F  +  HNI        VFK
Sbjct: 420 VDLGAAILEAKALGIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINT----RKVFK 475

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           +DG++ A A+N+ L   L+   P+G GNP P F   N ++++  V+  +H++      + 
Sbjct: 476 VDGIVTAEAINLKLWKELQFLEPFGIGNPEPRFILTNIRIKNPEVIGESHIRC-LIYDNK 534

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             ++ I FR  GT LG  L++     +   G + +NYWRG++  Q  + DA
Sbjct: 535 TFIKGICFRCIGTELGTTLLECTTTTLL--GKISINYWRGNENIQFIIEDA 583


>gi|15604385|ref|NP_220901.1| single-stranded-DNA-specific exonuclease RECJ (recJ) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861077|emb|CAA14977.1| SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) [Rickettsia
           prowazekii]
 gi|292572140|gb|ADE30055.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia
           prowazekii Rp22]
          Length = 586

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/585 (37%), Positives = 330/585 (56%), Gaps = 14/585 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           SI+G  W     +E I     + +   I D +AR++  R  +++  ++FL P I+ L+PD
Sbjct: 6   SINGKIWKQKPIKEDI--VTELCRSFKISDFLARIVSLRVNNLEEVENFLIPKIKNLLPD 63

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L D DKA  RI+QAI NS++I IF DYDVDGA S AL+  FL   ++  ++Y+PDRI
Sbjct: 64  PFHLLDMDKAVDRIIQAIVNSQQICIFADYDVDGATSAALLKHFLRDLNIICDIYVPDRI 123

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGP P  M+K    G +L+ITVDCG+ ++DAL+YA +  +DVIVIDHH        A
Sbjct: 124 YEGYGPTPLAMQKIKGNGTELLITVDCGAMAHDALKYAKDVKLDVIVIDHHISTEILPDA 183

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALA 248
            A+VNPNR+D+ S   +L A GV FL    I   L++ N         +L+  LDLVAL 
Sbjct: 184 VAIVNPNRIDETSEYKYLAAVGVTFLFATAILSNLKKRNYFSQSIPTPNLMKYLDLVALG 243

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
           TVCD++ L GLNRA+V  GL V +++ N G+K L +   +       +LG+++GP INAG
Sbjct: 244 TVCDMMKLTGLNRAFVTAGLKVMQQRQNIGIKTLYDIAGLDEIPQCYHLGFILGPRINAG 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+G+SNLG+ LL ++   E   LA +L+  N  R+++E  M+ +A    LTQ    + +
Sbjct: 304 GRVGKSNLGANLLATNCHNEANKLANELEKHNNERKVIELLMINEAIDIALTQ----KDS 359

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S++ V  + WHPG++G++A +LKEKF +P   ++   +G G  S RSI G D    +  A
Sbjct: 360 SLLFVVKEGWHPGVIGIVAGKLKEKFDKPVVVVA-LNNGIGKASCRSILGIDFSAEIINA 418

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +++ GGGHAMAAG T        L DF        +  L +    + D  L  + V
Sbjct: 419 KSKDLIISGGGHAMAAGFTATASKLQELQDFLNDAFSISINKLASYKHAEYDIDLTVNGV 478

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544
           N  L++ L++  P+G GN  P+F F +  +    +V   H++           ++ L AI
Sbjct: 479 NFRLMEELKTLEPFGPGNYEPIFKFDDLFILKADIVGSKHIKCMLAPDKQYFGNKALSAI 538

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            F   GTP  + L+ SR + +   G L +N W+ +   QL + D 
Sbjct: 539 VFDAVGTPFEDILLSSRARHISAIGTLKMNNWKYNYTIQLIIKDI 583


>gi|157828569|ref|YP_001494811.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933283|ref|YP_001650072.1| RecJ [Rickettsia rickettsii str. Iowa]
 gi|157801050|gb|ABV76303.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908370|gb|ABY72666.1| RecJ [Rickettsia rickettsii str. Iowa]
          Length = 587

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/585 (37%), Positives = 329/585 (56%), Gaps = 14/585 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+PD
Sbjct: 6   SINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLLPD 63

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L D +KA  R V AI N++KI IF DYDVDGA S AL+       ++  ++Y+PDRI
Sbjct: 64  PFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPDRI 123

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH        A
Sbjct: 124 AEGYGPTPFAMQKIKDHGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHITTEILPDA 183

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVALA 248
            A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVAL 
Sbjct: 184 VAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVALG 243

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
           TVCD++ L GLNRA+V  GL V +++ N G+K L +   +       +LG+++GP INAG
Sbjct: 244 TVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRINAG 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q +
Sbjct: 304 GRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----QDS 359

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           SV+ +  + WHPG++G++A +LKEKF +P   I+  + G G  S RSI G D G  +  A
Sbjct: 360 SVLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIINA 418

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  ++V
Sbjct: 419 KSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVNSV 478

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544
           N  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L AI
Sbjct: 479 NFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAI 538

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 539 AFNSVGTAFEDVLLSPKTKNIAAIGTLKTNNWQDNYTIQLIIKDI 583


>gi|57239581|ref|YP_180717.1| single-stranded-DNA-specific exonuclease recJ [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161660|emb|CAH58590.1| putative single-stranded-DNA-specific exonuclease RecJ [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 585

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/579 (38%), Positives = 336/579 (58%), Gaps = 16/579 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           ++G  W        +   L I QK  + +IVAR+L  R ++I+   +FL P+++  +P+P
Sbjct: 14  VTGALW--KPYDVNLRDILTIKQKFYLSEIVARILSARKINIEEISNFLYPTLKSSLPNP 71

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             + D DKA  RI  AI+N E I+IFGDYDVDGA S AL+ ++LS   V   +YIPDRI 
Sbjct: 72  FHMLDMDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIGVPTTIYIPDRIC 131

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN   + K    G  L ITVDCG+ +++ +  A +  +DVIVIDHH   +    A 
Sbjct: 132 EGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLPDAV 191

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250
           A++NPNRLD+ S   +L   GV FL+LV +++ L++      N   +L++ LDLVAL TV
Sbjct: 192 AVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFFKNNQEPNLINYLDLVALGTV 251

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P+IGLNR +V +GL +   + N GLK L + + +        LG+ IGP INAGGR
Sbjct: 252 CDVMPIIGLNRTFVKQGLKIMTTRQNLGLKTLSDVIGLEEKPNIYQLGFNIGPHINAGGR 311

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G ++LG+RLL +++ +E   ++ KL   N  R+ +E+    +A  ++            
Sbjct: 312 VGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQIEATIISSN---- 367

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I++    WHPGI+G++A RLK+KF  PS  IS  E+G G  S RSI   D+G  +  A  
Sbjct: 368 IIIATGNWHPGIIGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPDVDLGAAILEAKA 426

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            GI+++GGGHAMAAG +++      L +F  +  HNI        VFK+DG++ A A+N+
Sbjct: 427 LGIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINT----RKVFKVDGIVTAEAINL 482

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   L+   P+G GNP P F   N ++++  V+  +H++      +   ++ I FR  G
Sbjct: 483 KLWKELQFLEPFGIGNPEPRFILTNIRIKNSEVIGESHIRC-LIYDNKTFIKGICFRCIG 541

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T LG  L++     +   G + +NYWRG++  Q  + DA
Sbjct: 542 TELGTTLLECTTTTLL--GKISINYWRGNENIQFIIEDA 578


>gi|332977810|gb|EGK14567.1| single-stranded-DNA-specific exonuclease RecJ [Desmospora sp. 8437]
          Length = 791

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/591 (30%), Positives = 301/591 (50%), Gaps = 27/591 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S  RW  +  +E  ++   +  +  I  + AR+L++R V   + A+ FL  S+  L   P
Sbjct: 14  SKTRWQLVEAEE--SQVRELAGELGIHPLTARLLIHRGVSDPEQARRFLQVSLSELY-SP 70

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++   ++A  RI  A+   EKI+I+GDYD DG +S +L+M+       + + YIP+R  
Sbjct: 71  FLMDGIEEAVDRIRTALDRREKILIYGDYDADGVSSTSLLMKVFRGLDADVDYYIPNRFT 130

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N + + K    G QL+I+VD G ++    ++A   G+D+I+ DHH+  +      
Sbjct: 131 EGYGLNENALRKAKEAGVQLMISVDTGISAVKEAKFARELGLDLIITDHHEPPAVLPEGV 190

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP + D       L   GV F +   +   + +            LLDLVAL T+ D
Sbjct: 191 AVINPKKPDCSYPCKLLAGVGVAFKLAHALLGRVPE-----------ELLDLVALGTIAD 239

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +VPL+  NR     GL    R+ NPGL AL++   I   +TA ++G+ +GP INAGGR+ 
Sbjct: 240 LVPLMDENRVIAALGLKEINRRRNPGLSALMDVAGIQGEVTAGHVGFSLGPRINAGGRLD 299

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +     LL+++D ++  +LA +LD +N+ R+ +   +  +A A+V  +    +    IV
Sbjct: 300 TAATAVELLLTEDPEQARVLAEELDGMNRERQKLVEEIAAEACAQV--ESAPEKHRRFIV 357

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    W+ G++G++A+RL EK+ RP+  +  +E+ G   GS RSI G D+ + ++     
Sbjct: 358 VAAPGWNVGVIGIVASRLVEKYYRPTIVLGIDEETGMAKGSARSIAGLDLYRALTTC--G 415

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L + GGH MAAG+++ R N         + A   +      P+ +++  L+   VN+ 
Sbjct: 416 DLLPQFGGHEMAAGMSLPRENIEEFHRRLDQIAGEWLREEDYIPLSRVEADLSIGEVNLD 475

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           LI  LE   P G GNP P F      L  ++V+     HL+M  E +  ++L+A+ FR+ 
Sbjct: 476 LIKELERLEPCGMGNPTPRFQLRGAGLSRLQVMGREKNHLKMVLEVE-GDSLEAVGFRM- 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           G    E    +R +   + G L +N W   +  Q  + D        F  +
Sbjct: 534 GELAAEIAPSARPE---LLGELSINEWNHRRSPQFLIRDIRVPHLQVFDWR 581


>gi|310643546|ref|YP_003948304.1| single-stranded-DNA-specific exonuclease recj [Paenibacillus
           polymyxa SC2]
 gi|309248496|gb|ADO58063.1| Single-stranded-DNA-specific exonuclease RecJ [Paenibacillus
           polymyxa SC2]
          Length = 798

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 304/592 (51%), Gaps = 26/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S +RW     +  +  A  +T++  I  +++R+LVNR V+    A  FL  S+  +  DP
Sbjct: 4   SQYRW--KTPEVNLEAAQPLTEELGISPLLSRLLVNRGVTTAGEANRFLYGSVDDVH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L    +A  RI QA+   E I+I+GDYD DG +S +LM++ +     + ++YIP R  
Sbjct: 61  FLLLGMKEAVPRIRQALERGEHILIYGDYDADGVSSTSLMIQLMRFLKASYDIYIPHRSN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++    +G  L+ITVD G ++ + + YAT+ GIDVIV DHH+  +    AY
Sbjct: 121 EGYGLHNHALDWAHQQGVTLVITVDTGISAVEQIAYATSLGIDVIVTDHHEPPAVLPEAY 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
            L+NP   D       L   GV   +   +   + +              ++ A+ TV D
Sbjct: 181 TLINPKLPDCPYPFKGLAGVGVALKLAQALLSEVPE-----------EWFEIAAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311
           ++PL G NR  V +G+   R    PG++AL+    +        N+ + + P INA GR+
Sbjct: 230 LMPLHGENRTIVRRGIQSMRNSAFPGIRALLHVAGVEISTVTSVNIAFALAPRINASGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL ++  +E + LA  LD+LN+ R+ +   ++EQAE ++ ++ +  +  SVI
Sbjct: 290 DHAGRAVSLLTTEKEEEADQLAHALDLLNRERQQVVERIVEQAEQQLASKLNGDKLPSVI 349

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G+ W+ G+VG++A++L +++ RP+  +  + E G   GS RSI   DI   ++   E
Sbjct: 350 VLAGEGWNVGVVGIVASKLLDRYYRPTIILGIDTETGMCKGSARSIPALDIYSALTDCHE 409

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH  AAG+T+ R +     +   ++A +I+      P+ + D V     +++
Sbjct: 410 --LMEHFGGHPSAAGMTLSRDHLELFEERLNRYAGSILTPEDFIPIAEADMVCRLDEISL 467

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            +++ LE   P+G GNP+P F     +L+  R +     H+++  E Q+  +L AIAFR 
Sbjct: 468 QVVEELELLQPFGMGNPSPRFVLQGLQLREARKMGREKNHVKLLLE-QNGLSLDAIAFRR 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               L +FL Q     + + G L +N W G +  QL + D        F  +
Sbjct: 527 GD--LADFLQQQTD--IDLLGELSINEWNGKRSLQLMMQDIRVQAPQIFDYR 574


>gi|58584384|ref|YP_197957.1| single-stranded DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418700|gb|AAW70715.1| Single-stranded DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 579

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 231/587 (39%), Positives = 332/587 (56%), Gaps = 16/587 (2%)

Query: 6   FLGVEC-SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
            LG+E   I+   W     +      L +TQ+  +P+I+AR L  R V+I+ A +FL P 
Sbjct: 2   LLGIEKRGITNALWKLQ--EADQREVLTLTQRFELPEILARTLAIRGVNIENAGNFLYPL 59

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR L+PDP  L D DKA  RI+QAI N E I IFGDYDVDGA S AL+ R+L    +++ 
Sbjct: 60  IRSLLPDPFHLLDMDKAVFRIIQAINNDENIAIFGDYDVDGATSSALISRYLRAIGIHSI 119

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDR+ +GYG N + + +   +G  L I+VDCG+ +Y  ++ A   G+DVIVIDHH  
Sbjct: 120 IYIPDRVDEGYGLNSNALLQLKKKGIDLCISVDCGTLAYQPIEDAKGFGLDVIVIDHHLG 179

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242
             +   A A+VNPNRLD+ S    L A GV FL+ V + + LR+ +        DL  LL
Sbjct: 180 TEKLPSAIAVVNPNRLDESSPYNSLAAVGVSFLLTVALNKSLREQDFFAGKKEPDLFDLL 239

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVAL TVCDV+ + GLNRA+V +GL V   + N GL+ L + + I        L + IG
Sbjct: 240 DLVALGTVCDVMQITGLNRAFVSQGLKVMSARKNVGLRVLFDALGILERPNVSRLSFNIG 299

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIGE+ LG+RLL +DD +E + +A+KL  LN  R++ME+  L +A  +V    
Sbjct: 300 PCINAGGRIGEALLGARLLSTDDKKEADSIALKLIDLNNARKMMENEALLEAIIQVEKST 359

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
                    ++    WH G++G++A+RLKEKF  P+  IS      G  S RSI G DIG
Sbjct: 360 QSGAN---FIMVSGNWHQGVIGIIASRLKEKFHLPTIVISLNNR-IGKASCRSIPGVDIG 415

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             V  A    ++++GGGH+MAAG  +       L DF  +               K+DG+
Sbjct: 416 AAVLSAKCMNLIIEGGGHSMAAGFLINEDKMSDLHDFLTERFAYSTND----KALKVDGI 471

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           + A A+N++L + L+   P+G GNP P F     K++   +V + H++      D   ++
Sbjct: 472 VTAKAINLSLWNQLQRLEPFGVGNPEPRFIIQGAKIRKPEIVGVDHIKCFIVDDD-VMVR 530

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAFR   T LG  +M+   +   + G + +NYW G++  Q  + D 
Sbjct: 531 AIAFRSANTHLGSAIMEGNIEA--ILGKISMNYWNGNEFVQFLIEDV 575


>gi|157964581|ref|YP_001499405.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia massiliae
           MTU5]
 gi|157844357|gb|ABV84858.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia massiliae
           MTU5]
          Length = 608

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/587 (37%), Positives = 333/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 25  QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 82

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D +KA  R V AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 83  PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 142

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 143 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 202

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 203 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMKYLDLVA 262

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL + +++ N G+K L +   ++      +LG+++GP IN
Sbjct: 263 LGTVCDMMKLTGLNRAFVASGLKIMQQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRIN 322

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 323 AGGRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQ----Q 378

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A +LKEKF +P   I+  + G G  S RSI G D G  + 
Sbjct: 379 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 437

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 438 NAKSKDLLIAGGGHAMAAGFTVTADKLQELQNFFNNAFRISINKLENYKHAEYDIELTVN 497

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
           +VN  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 498 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 557

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+ S+ K +   G L  N W+G+   QL + D 
Sbjct: 558 AIAFNSVGTAFEDVLLSSKAKNIAAIGTLKTNNWQGNYTIQLIIKDI 604


>gi|58579570|ref|YP_197782.1| single-stranded-DNA-specific exonuclease recJ [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58418196|emb|CAI27400.1| Single-stranded-DNA-specific exonuclease recJ [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 590

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/579 (38%), Positives = 336/579 (58%), Gaps = 16/579 (2%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           ++G  W        +   L I QK  + +IVAR+L  R ++I+   +FL P+++  +P+P
Sbjct: 19  VTGALW--KPYDVNLRDILTIKQKFYLSEIVARILSARKINIEEISNFLYPTLKSSLPNP 76

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             + D DKA  RI  AI+N E I+IFGDYDVDGA S AL+ ++LS   V   +YIPDRI 
Sbjct: 77  FHMLDMDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIGVPTTIYIPDRIC 136

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN   + K    G  L ITVDCG+ +++ +  A +  +DVIVIDHH   +    A 
Sbjct: 137 EGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLPDAV 196

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250
           A++NPNRLD+ S   +L   GV FL+LV +++ L++      N   +L++ LDLVAL TV
Sbjct: 197 AVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFFKNNQEPNLINYLDLVALGTV 256

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+P+IGLNR +V +GL +   + N GLK L + + +        LG+ IGP INAGGR
Sbjct: 257 CDVMPIIGLNRTFVKQGLKIMTTRQNLGLKTLSDVIGLEEKPNIYQLGFNIGPHINAGGR 316

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G ++LG+RLL +++ +E   ++ KL   N  R+ +E+    +A  ++            
Sbjct: 317 VGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQIEATIISSN---- 372

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I++    WHPGI+G++A RLK+KF  PS  IS  E+G G  S RSI   D+G  +  A  
Sbjct: 373 IIIATGNWHPGIIGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPDVDLGAAILEAKA 431

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            GI+++GGGHAMAAG +++      L +F  +  HNI        VFK+DG++ A A+N+
Sbjct: 432 LGIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINT----RKVFKVDGIVTAEAINL 487

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   L+   P+G GNP P F   N ++++  V+  +H++      +   ++ I FR  G
Sbjct: 488 KLWKELQFLEPFGIGNPEPRFILTNIRIKNSEVIGESHIRC-LIYDNKTFIKGICFRCIG 546

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T LG  L++     +   G + +NYWRG++  Q  + DA
Sbjct: 547 TELGTTLLECTTTTLL--GKISINYWRGNENIQFIIEDA 583


>gi|308174463|ref|YP_003921168.1| single-strand DNA-specific exonuclease [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607327|emb|CBI43698.1| putative single-strand DNA-specific exonuclease [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554383|gb|AEB24875.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           amyloliquefaciens TA208]
          Length = 785

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/593 (31%), Positives = 278/593 (46%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW     Q    +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQ--QPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L    +A  RI  A+   E IMI+GDYD DG  S ++M+  L   S N + YIPDR 
Sbjct: 60  PYELKGMREAVDRIKLAVSRGEPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN          G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 TEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKELGLDVIITDHHEPGPELPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P +         L   GV F +   +   L +           ++LDL A+ TV 
Sbjct: 180 FAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPE-----------AMLDLAAIGTVA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     G+   R    PGLKALI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLIASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL++DD  E E LA  +D LN+ R+ M   M E+A   V  Q       S 
Sbjct: 289 IEQADPAVHLLMTDDQFEAEELASDIDRLNKERQKMVKTMTEEAVEMVQQQGG---NPSA 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L E+F RP+  +  + E G   GS RSI GF++    S + 
Sbjct: 346 IVVAKAGWNPGVVGIVASKLAERFYRPAVVLGMDEEQGIAKGSARSIRGFNL--FTSLSQ 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T++  +   L D   + A   +      PV ++D V     + 
Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  L    P+G  NP P     N  L  +R++     H++MT ++ DS  L  + F 
Sbjct: 464 VESITELNMLSPFGMLNPKPHVMVENAVLDEVRLIGANKNHVKMTVKN-DSAALDCVGFN 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G  + + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELEAG----IVPGSTISIVGEMSINEWNNRKKPQLMIKDAAVPEWQLFDIR 571


>gi|16079816|ref|NP_390640.1| single-strand DNA-specific exonuclease [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310700|ref|ZP_03592547.1| hypothetical protein Bsubs1_15096 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315024|ref|ZP_03596829.1| hypothetical protein BsubsN3_15007 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319945|ref|ZP_03601239.1| hypothetical protein BsubsJ_14918 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324226|ref|ZP_03605520.1| hypothetical protein BsubsS_15062 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81342119|sp|O32044|RECJ_BACSU RecName: Full=Single-stranded-DNA-specific exonuclease recJ
 gi|2635226|emb|CAB14721.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 786

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 189/593 (31%), Positives = 281/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW      +   +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  +    +AA RI QAI   EKIMI+GDYD DG  S ++M+  L   S   + YIPDR 
Sbjct: 60  PFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN          G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 KEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+V+P +         L   GV F +   +   L              LLDL A+ T+ 
Sbjct: 180 RAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     GL   RR    GLK LI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+S+DS E E LA ++D LN+ R+ M S M ++A   V  Q  D      
Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L ++F RP+  +  +E+ G   GS RSI GF++    S + 
Sbjct: 346 IVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T++  +   L     + A N +      PV ++D V     + 
Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCGVEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  +    P+G  NP P     N  L+ +R +     H++MT  ++ S+ L  + F 
Sbjct: 464 VESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQ-LDCVGFN 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G R+ + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELQEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571


>gi|118580215|ref|YP_901465.1| single-stranded-DNA-specific exonuclease RecJ [Pelobacter
           propionicus DSM 2379]
 gi|118502925|gb|ABK99407.1| exonuclease RecJ [Pelobacter propionicus DSM 2379]
          Length = 568

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/581 (32%), Positives = 286/581 (49%), Gaps = 19/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
            +W+       +    A+  + AI  + A +L  R +S   A D FL+PS+  ++ DP  
Sbjct: 4   KQWIVRTAPVELP---AMAGEKAILPLTAAILAGRGISEPDAMDAFLSPSLADML-DPSR 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +     A  R+++A    EKI ++GDYDVDG     L++ FL     + + +IP+R  DG
Sbjct: 60  MKGMADAVARLLEARRRQEKITVYGDYDVDGITGTTLLVSFLRQTGFDCDYFIPNRFDDG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +++ IN GA LI++VDCG T+ +   +   +G ++I++DHH  K     A A+
Sbjct: 120 YGLNGEALDRIINAGAALILSVDCGITAVEEALFCRQRGAELIIVDHHAPKETLPDACAV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCD 252
           +NP +         L   GV F +LV +   LR       +   DL   LDLVAL T+ D
Sbjct: 180 LNPLQSGCDYAFKCLAGVGVAFNLLVALRAALRDQGSFGSDSGPDLRQWLDLVALGTIAD 239

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           VVPLIG NR YV  GL +      PG++AL +   +   +++  +G+ + P +NA GR+ 
Sbjct: 240 VVPLIGQNRIYVTHGLRLLAAPCKPGIQALKKVAGVGGAVSSGQVGFRLAPRLNAAGRME 299

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL+ DD      +A +LD  N  R+ +E A+L++A + V  Q  +      IV
Sbjct: 300 SAVPGVELLLGDDPPHCLAIAEELDAANGERQAIERAILQEAISLV-EQGGNYPDRRSIV 358

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG++A+RL E+F RP+  I+ +E G+G GSGRSI GF +   +       
Sbjct: 359 LASPSWHQGVVGIVASRLAERFHRPTILIALDEQGQGKGSGRSIPGFHLLDALKVC--SP 416

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH  A G+++           F+  A  ++      P   ID       V   L
Sbjct: 417 LLERFGGHRHAVGVSLSGERVDDFSATFEAEARRLLGNGELMPRLDIDAEAEPREVTKEL 476

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
              L+   P+G GNP P+    +  +   RVV   HL++     D     AIAFR+    
Sbjct: 477 ALELKRLEPFGMGNPEPLLMMRSLTVLEQRVVGEDHLRLRLSRDDH-VFNAIAFRMASRT 535

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           + E         + +     +N W GS   QLRV D  P E
Sbjct: 536 VSE--------TIDIAFFPEMNQWNGSSTLQLRVKDLRPTE 568


>gi|15892684|ref|NP_360398.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia conorii
           str. Malish 7]
 gi|15619857|gb|AAL03299.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia conorii
           str. Malish 7]
          Length = 587

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 222/587 (37%), Positives = 331/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 4   QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D +KA  R V AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+K L +   +       +LG+++GP IN
Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRHNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A +LKEKF +P   I+  + G G  S RSI G D G  + 
Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
           +VN  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 477 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+  + K + V G L  N W+ +   QL + D 
Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAVIGTLKTNNWQDNYTIQLIIKDI 583


>gi|295132117|ref|YP_003582793.1| single-stranded-DNA-specific exonuclease RecJ [Zunongwangia
           profunda SM-A87]
 gi|294980132|gb|ADF50597.1| single-stranded-DNA-specific exonuclease RecJ [Zunongwangia
           profunda SM-A87]
          Length = 567

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/581 (28%), Positives = 270/581 (46%), Gaps = 22/581 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW         +   ++ Q   +   +AR+L  R + S + AK F  P+++ L  DP ++
Sbjct: 4   RWTIKP-NPNPDIVNSLMQSLGVGKPIARLLAQRGINSFEEAKKFFRPNLKDLH-DPYLM 61

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI +A+   E IM++GDYDVDG  SVALM  +L     N   YIPDR  +GY
Sbjct: 62  RDMDKAVARIEKALAEEENIMVYGDYDVDGTTSVALMSSYLKTRYPNVATYIPDRYNEGY 121

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YA  +GID ++ DHH+   +   A A++
Sbjct: 122 GVSYQGIDFAADNDISLIIALDCGIKAIDKVAYAREKGIDFVICDHHRPGEKIPEAAAVL 181

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +               LL  LDLVA A   D+VP
Sbjct: 182 DPKREDCEYPYKELCGCGVGFKLIQALAEKRGDS-----IQVLLPYLDLVATAIGADIVP 236

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G KA++ ++     IT  ++ ++I P INA GR+    
Sbjct: 237 ITGENRILAYHGLHVINVAPRQGFKAILSQLK-KETITITDVVFVIAPRINAAGRMKHGL 295

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL  +  ++ +  A +++  N +R+  + ++  +A  ++  +  + Q+    VV  
Sbjct: 296 HAVELLTEEKEEQAQQFASEIEYHNSHRKDTDKSITAEALVQI--EELEEQERLSTVVYA 353

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           D WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 354 DHWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEACQEH--IE 410

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT++   +      F++     +   + TP   ID  +    +      +
Sbjct: 411 QFGGHMYAAGLTIKEEEYDNFKRKFEEVVAETIDRKLLTPEISIDAEIELDEITPKFWRI 470

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLA--HLQMTFES-QDSETLQAIAFRVYGT 551
           L+   P+G GN +P+F   N       + V     HL+       ++ +   I F +   
Sbjct: 471 LKQFAPFGPGNMSPLFMSRNLTDSGFGKCVGNEHTHLKCKVSQLNNTASFDVIGFNLGE- 529

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              +  +    K       +  N W G+   QL++ D   V
Sbjct: 530 ---KLELIQNKKSFSAVYAVDENEWNGNVSLQLKLKDLKEV 567


>gi|27379488|ref|NP_771017.1| single-stranded-DNA-specific exonuclease [Bradyrhizobium japonicum
           USDA 110]
 gi|27352640|dbj|BAC49642.1| single-stranded-DNA-specific exonuclease [Bradyrhizobium japonicum
           USDA 110]
          Length = 633

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 284/596 (47%), Positives = 374/596 (62%), Gaps = 4/596 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            QAFLGV  S++   W   L   G  +ALAI Q+H +P+++ARVL  R V ID   DFL+
Sbjct: 33  PQAFLGVTRSLTDKLWRDRLDARGAAQALAIVQRHQLPELLARVLAGRGVDIDAVPDFLD 92

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+IR LMPDP  +T+ + AA+RI  A    EK+ IFGDYDVDGA S AL+   L HC ++
Sbjct: 93  PTIRKLMPDPFTVTEMEAAAKRIADAAAKGEKVAIFGDYDVDGATSAALLAWHLRHCGLD 152

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI +GYGPN   +     +GA L++TVDCG+TS + L  A   G+ V+VIDHH
Sbjct: 153 PLIHIPDRIFEGYGPNTEAVRGLAAKGATLLVTVDCGTTSIEPLAEAKRLGMSVVVIDHH 212

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLL 239
           Q  +E     ALVNPNRLDDLSG GHL A G+V + LV + R LRQ           DLL
Sbjct: 213 QAGTELPLVDALVNPNRLDDLSGLGHLAAVGLVLVTLVAVNRELRQRGFWNAEMPEPDLL 272

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
            +L  VAL TV DV PLIGLNRA+V KGL+  RR+ + G  AL++   ++ P  A +LG+
Sbjct: 273 GMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGF 332

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           M+GP +NAGGRIG ++LG RLL+  DS E   +A +LD LN  RR++E A   QAEA+ L
Sbjct: 333 MLGPRVNAGGRIGRADLGVRLLLEGDSVEAARIAAELDRLNTERRVIEQAAEAQAEAEAL 392

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  +  VIV   + WHPG+VGL+A+RLKEKF RP+FAI+ E  G G GSGRSI G 
Sbjct: 393 ASIGLEDKLGVIVTASEGWHPGVVGLVASRLKEKFSRPAFAIALEPGGIGTGSGRSIAGV 452

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           DIGK V  AV +GIL+KGGGHAMAAG+T+ +        + +      V          I
Sbjct: 453 DIGKAVRQAVTDGILLKGGGHAMAAGVTLRKEKLAEFRAYLENALARDVAEARHVNELYI 512

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG ++A AV   L   L  AGP+G+GNP  V A P H+L     V  AHL++ F+S D  
Sbjct: 513 DGAVSARAVTTELAATLNRAGPFGSGNPEAVLALPAHQLVYADEVGQAHLRLRFKSGDGA 572

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEG 594
            +  IAFR  G  LG  L+ +RG+++HV G L V+ ++G++R Q RV+D + P +G
Sbjct: 573 IVNGIAFRSVGQKLGNALVANRGQQLHVAGSLSVDRYQGAERVQFRVIDVALPDQG 628


>gi|34581633|ref|ZP_00143113.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia sibirica
           246]
 gi|28263018|gb|EAA26522.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia sibirica
           246]
          Length = 587

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 221/587 (37%), Positives = 330/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 4   QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D +KA  R V AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+K L +   +       +LG+++GP IN
Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A +LKEKF +P   I+  + G G  S RSI G D G  + 
Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVAAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
           +VN  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 477 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583


>gi|295706718|ref|YP_003599793.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium
           DSM 319]
 gi|294804377|gb|ADF41443.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium
           DSM 319]
          Length = 780

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/593 (30%), Positives = 296/593 (49%), Gaps = 29/593 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S  RW      E         +   I  +VA +L+NR ++  + A++FL+        DP
Sbjct: 4   SKKRWNVQECDE--QLVNEFVENLNITPLVASLLLNRGMTTVEAAREFLHVD-AQTFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI ++EKIMI+GDYD DG +S ++M+  L     + + YIP+R  
Sbjct: 61  FLLHDMDKAVARIQQAIDHNEKIMIYGDYDADGVSSTSVMLSALQQLGADVDFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +K    G QL+ITVD G ++ +   YA     D+I+ DHH+       AY
Sbjct: 121 EGYGPNKAAFDKISAGGYQLVITVDTGISAVEETAYARELNFDLIITDHHEPGPVLPDAY 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV F +   +   L +            LL+L  + T+ D
Sbjct: 181 AIIHPKLPGSTYPFKELAGVGVAFKLAHALLGELPE-----------HLLELAVIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRI 311
           +VPL+  NR    KGL   +     G++AL+    +      E+ +G+ + P INA GR+
Sbjct: 230 LVPLVDENRLIARKGLDYLKLTKRTGIEALLSVCGVKREEINEDTIGFAMAPRINAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            +++    LL++ +++E + LA ++D LN+ R+ + + + E+A   V       +  SV+
Sbjct: 290 QDADPAVHLLMTTNAEEAKGLAKEIDALNKVRQQIVNDITEEAVEFVENMYPPDEN-SVL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFDIGKMVSFAVE 430
           +VEG+ W+ G+VG++A+RL EKF RP+  +S + +     GS RSIEGFD+   +S    
Sbjct: 349 IVEGEGWNAGVVGIVASRLVEKFYRPTIVLSIDSENRIAKGSARSIEGFDLFANLSKC-- 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAG+T+   +   L     + A N++      P+  +D V     + +
Sbjct: 407 RDILPHFGGHPMAAGMTLNSDDVEELRTRLNEQASNVLTEQDFIPITSVDTVCTTEEITL 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             I+ + +  P+G  NP P     +    S+R +     HL++ FE  D  ++ A+ F  
Sbjct: 467 ENIEQMSALAPFGMHNPKPKVLIKDVHTTSMRKIGANKNHLKLVFEDSD-VSVDAVGFG- 524

Query: 549 YGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               LG  L +     ++ + G L +N W   ++ QL V D S  E   F  +
Sbjct: 525 ----LGYILDEVSPIAKVSLVGELSINEWNNMRKPQLMVEDISVDEWQMFDYR 573


>gi|328912788|gb|AEB64384.1| putative single-strand DNA-specific exonuclease [Bacillus
           amyloliquefaciens LL3]
          Length = 785

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/593 (31%), Positives = 277/593 (46%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW     Q    +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQ--QPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L    +A  RI  A+   E IMI+GDYD DG  S ++M   L   S N + YIPDR 
Sbjct: 60  PYELKGMREAVDRIKLAVSRGEPIMIYGDYDADGVTSTSVMQTALRQLSANVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN          G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 TEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKELGLDVIITDHHEPGPELPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P +         L   GV F +   +   L +           ++LDL A+ TV 
Sbjct: 180 FAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPE-----------AMLDLAAIGTVA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     G+   R    PGLKALI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLIASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL++DD  E E LA  +D LN+ R+ M   M E+A   V  Q       S 
Sbjct: 289 IEQADPAVHLLMTDDQFEAEELASDIDRLNKERQKMVKTMTEEAVEMVQQQGG---NPSA 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L E+F RP+  +  + E G   GS RSI GF++    S + 
Sbjct: 346 IVVAKAGWNPGVVGIVASKLAERFYRPAVVLGMDEEQGIAKGSARSIRGFNL--FTSLSQ 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T++  +   L D   + A   +      PV ++D V     + 
Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDIT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I  L    P+G  NP P     N  L  +R++     H++MT ++ DS  L  + F 
Sbjct: 464 VESITELNMLSPFGMLNPKPHVMVENAVLDEVRLIGANKNHVKMTVKN-DSAALDCVGFN 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 G       G  + + G + +N W   K+ QL + DA+  E   F  +
Sbjct: 523 KGELEAG----IVPGSTISIVGEMSINEWNNRKKPQLMIKDAAVPEWQLFDIR 571


>gi|312131175|ref|YP_003998515.1| exonuclease recj [Leadbetterella byssophila DSM 17132]
 gi|311907721|gb|ADQ18162.1| exonuclease RecJ [Leadbetterella byssophila DSM 17132]
          Length = 567

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/578 (28%), Positives = 269/578 (46%), Gaps = 14/578 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W      E       + Q+  +   +A +L  R + + D AK F  PS++ L  DP +
Sbjct: 3   KHWSYKPLPEDGE-VAELQQQLNVSSAMATLLWQRGIYTFDAAKHFFRPSLKDLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA  R+  A+   EKI+I+GDYDVDG  +VA++  FL    VN   Y PDR  +G
Sbjct: 61  MRDMDKAVDRVSAALNADEKILIYGDYDVDGTTAVAMVYGFLKKKHVNLLYYNPDRYTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++    +G  LII++DCG  S D + YA + GID I+ DHH+   E   A A+
Sbjct: 121 YGVSKQGIDYAKEQGVSLIISLDCGIKSADKVAYARSLGIDFIICDHHEPGEELPEAVAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D +     L   GV F +L  + +            +L   LDL  ++   D+V
Sbjct: 181 LDPKRKDCIYPYKELTGNGVGFKLLSALCQTRG-----WEWAELEEYLDLCMVSIASDIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL          LKAL+        +  E++ + IGP INA GRI  +
Sbjct: 236 PITGENRILAFYGLQKLNASPRISLKALMNVAGTQGEMNIESVVFTIGPRINAAGRIRHA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D  E   LA  +   N  R+ +++ + E+A   +       ++A   V+ 
Sbjct: 296 RAAVELLLSEDEDEAMELAYAIQKHNTERKGLDARITEEALDLIKRDPWLYEEAWSTVLY 355

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+R  E F RP+   +   +    GS RS+ GFD+   +    E   L
Sbjct: 356 KEDWHKGVIGIVASRCIENFYRPTIIFTKAGEDYAAGSARSVAGFDLYGAIEACSEH--L 413

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGH  AAG+T+           F       +      PV  +D  ++ S +      
Sbjct: 414 IQFGGHMHAAGMTISIDKIEDFRKAFDGEVKARLLEEQRIPVITVDLEVHLSELTPKFHK 473

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +++   P+G  N  P+F   N + ++ +V+   HL++    QD  +  AI F +      
Sbjct: 474 VMKQMSPFGPENMQPIFVSHNLRARTAQVLKEKHLKLEVV-QDGFSFPAIGFGLAPEFYR 532

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           E    + G+   +   L  N++RG+   QL + D    
Sbjct: 533 EL---ASGRPFSMAYSLEENHFRGNTTQQLFIRDIKLA 567


>gi|58698831|ref|ZP_00373706.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630248|ref|YP_002727039.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia sp. wRi]
 gi|58534647|gb|EAL58771.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592229|gb|ACN95248.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia sp. wRi]
          Length = 579

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 231/582 (39%), Positives = 340/582 (58%), Gaps = 15/582 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+   W     +    + L +TQ+  +P+I+AR+LV R V+I+ A DFL P IR L+
Sbjct: 7   KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D DKA  RI++AI N E + IFGDYDVDGA S AL+ R+L    +++ +YIPD
Sbjct: 65  PDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYG +   + +    G  L I+VDCG+ +Y  ++ A   G+D+IV+DHH    +  
Sbjct: 125 RVDEGYGLSTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247
            A A+VNPNRLD+ S   +L A GV FL++V + + LR+          DL  LLDLVAL
Sbjct: 185 SAVAIVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDV+ + GLNRA V +GL V   + N GL+ L + + I    +   LG+ IGP INA
Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIGE++LG+RLL +DD +E   +A+KL  LN  R+++E+  L +A A+          
Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
               ++    WH GI+G++A+RLKE+F  P+  IS   +G G  S RSI G DIG  V  
Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIGAAVLS 420

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A    ++++GGGH+MAAG +++      L DFF +   N +         K D ++ A A
Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N++L + L+  GP+G GNP P F     K++   V+ + H++      D+  ++AIAFR
Sbjct: 477 INLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVKAIAFR 535

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              T LG  +MQ   K   + G + +NYW G++  Q  + D 
Sbjct: 536 SANTHLGSAIMQGNVKA--ILGKISMNYWNGNEFVQFLIEDV 575


>gi|197105103|ref|YP_002130480.1| single-stranded-DNA-specific exonuclease RecJ [Phenylobacterium
           zucineum HLK1]
 gi|196478523|gb|ACG78051.1| single-stranded-DNA-specific exonuclease RecJ [Phenylobacterium
           zucineum HLK1]
          Length = 598

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 223/587 (37%), Positives = 337/587 (57%), Gaps = 7/587 (1%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           +LGV  S+SG RW        + R   ++    + + +AR L +R V     + FLNP++
Sbjct: 10  YLGVTRSLSGRRWRERAACPDLTRRHQLS--LGLSEPLARALASRGVGEGEGETFLNPTL 67

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           + L PDP   +D D+AA  +V A+ N  +I++F DYDVDGA+S AL++R+     +   +
Sbjct: 68  KALFPDPSCFSDMDRAAEILVDALENRRRIVVFADYDVDGASSAALLVRWFRAMGLEIAI 127

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV- 184
           Y+PDR+ +GYGP+P+   +  +EGA+L++TVDCG+ ++DAL  A   G+ V+VIDHH + 
Sbjct: 128 YVPDRLTEGYGPSPAAFRRLKDEGAELVVTVDCGAAAHDALACAGEIGLPVVVIDHHLMR 187

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
             E  P  ALVNPNR D +SGQGHL AAGV F++L  + R  R+    P   DL + LDL
Sbjct: 188 PGEIPPIAALVNPNRPDCVSGQGHLAAAGVTFVLLAALNREARRRGLAPE-PDLRAWLDL 246

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
            A+  +CDV  L G NRA   +GL V     NPGL AL++        +  ++G+++GP 
Sbjct: 247 AAMGAICDVTRLTGFNRALAAQGLKVMSGWKNPGLAALMQVAKGQGAASTFHVGFLLGPR 306

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGRIG S+LG+RLL +DD  E   LA +LD LN +R+ +E+ ++E A   +  Q  +
Sbjct: 307 INAGGRIGRSDLGARLLSTDDPDEAAALAAELDGLNASRKEVEAQVMEAAIRHI-EQESN 365

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGK 423
              A  ++V  D WHPG++G++A RL+E++ +P   +        G GSGRS  G ++G+
Sbjct: 366 AADAPCLLVAQDDWHPGVIGIVAGRLRERYRKPCIVVGIDRAANVGKGSGRSQPGVNLGR 425

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            V  A EEG+L+ GGGHAMAAGL+V       L DF      +           +ID ++
Sbjct: 426 AVQAAFEEGLLLAGGGHAMAAGLSVRPDAIPELRDFLNARLADEQAQAAAEDGLEIDALV 485

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
            A   + AL    +   P+G GNP P FA  + +++    +   H++ T        L+A
Sbjct: 486 TARGCDRALWRDFQRLAPFGPGNPEPTFAAADMRIERPMALKGGHVRCTLTDSSGGKLKA 545

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +A+R+  T  G  L+Q  G  +HV G L  + W+G +  +L + D +
Sbjct: 546 VAWRMADTEAGRRLLQEGGA-VHVAGRLKPDDWQGREGVELEIEDVA 591


>gi|258543197|ref|YP_003188630.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634275|dbj|BAI00251.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637335|dbj|BAI03304.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640387|dbj|BAI06349.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643444|dbj|BAI09399.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646499|dbj|BAI12447.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649552|dbj|BAI15493.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652538|dbj|BAI18472.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655596|dbj|BAI21523.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 610

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 230/599 (38%), Positives = 333/599 (55%), Gaps = 12/599 (2%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRAL---AITQKHAIPDIVARVLVNRNVSIDYAK 58
           +  A LGVE S+ G RW    G E         A+ Q+  IP+IV R+L  R ++ D A 
Sbjct: 16  SSPAVLGVEASLIGRRWAWRAGAEDPALMRLGAALAQQLGIPEIVGRLLAMRQITPDQAS 75

Query: 59  DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118
            FL P +R LMPDP  LTD DKAA R+ +A+ N E I IFGDYDVDGA + A++  F   
Sbjct: 76  HFLEPKLRALMPDPSSLTDMDKAADRMAKAVQNREVIGIFGDYDVDGACASAILASFFEE 135

Query: 119 CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178
                + +IPDR+ +GYGPN + ++  + +GA ++I VDCG+ S D L   T++  DVIV
Sbjct: 136 LGCTVHTHIPDRMTEGYGPNVAALDNLVAQGASILICVDCGTASADILSQVTDK-ADVIV 194

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LN 235
           +DHH+ +    P  A VNPNR D  SG  H+CAA + FL  V   R LR+ +        
Sbjct: 195 LDHHKSEDALPPILATVNPNRPDCSSGLHHICAAALAFLAAVATTRDLRRADWFTADQPP 254

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
            DL+  LDLVALATVCDV+PL GLNRA+V +GL +  R+   GL AL+E   ++    A 
Sbjct: 255 PDLMRQLDLVALATVCDVMPLHGLNRAFVTQGLKIMARRQRTGLNALMEIAGVTKAPDAF 314

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           + G+ +GP INAGGRI E+ LG RLL   DS E   +A +LD +N+ R+ +E+ +L++A 
Sbjct: 315 SCGFALGPRINAGGRIAEAALGLRLLRCPDSFEARQMAERLDAVNRRRQGVEADILDRAM 374

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
            +   Q       +VI++ G  WHPG+VG++A R+KE+F RP+   + +EDG   GSGRS
Sbjct: 375 QQAEAQ--KEAGHAVILLAGKDWHPGVVGIVAGRIKERFNRPALVGAEQEDGTIKGSGRS 432

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           + G D+G ++  A + G+L  GGGHAMAAG ++          F               P
Sbjct: 433 VPGLDLGTVIIAARQAGMLKTGGGHAMAAGFSLTADKLEDFHTFLDTRLAQAATLPEKVP 492

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF 533
              +D V++ S     L   + +  P+GAGNP P+ A P   +     +      L++  
Sbjct: 493 -LTVDAVVSISGATAELAQDMGALAPFGAGNPEPLLAIPRVTVIRADRIGRDGNTLRLLL 551

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +++  L+A+ FR +  PL   L  +    +H+ G+L    W G       + DA+  
Sbjct: 552 KGENNGRLKALLFRAHENPLAAKLEDTTRPALHLAGYLRAESWNGRTDATFFIQDAAAA 610


>gi|239947713|ref|ZP_04699466.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921989|gb|EER22013.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 599

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/587 (37%), Positives = 334/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 16  QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 73

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D +KA  R V+AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 74  PDPFHLLDMEKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLNIICDIYVPD 133

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 134 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 193

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL +  I   L++ N         +L+  LDLVA
Sbjct: 194 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFVTAILSNLKKQNYFTQPMLQPNLMKYLDLVA 253

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+KAL +   ++      +LG+++GP IN
Sbjct: 254 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKALYDMAGLNEIPKCYHLGFILGPRIN 313

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 314 AGGRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQ----Q 369

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A RLKEKF +P   I+  + G G  S RSI G D G  + 
Sbjct: 370 DSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 428

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 429 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVN 488

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
           +VN  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 489 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCILVPNKRGFGNKALS 548

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 549 AIAFNSVGTSFEDVLLSPKAKNITAIGTLKTNNWQDNYTIQLIIKDI 595


>gi|325286103|ref|YP_004261893.1| single-stranded-DNA-specific exonuclease RecJ [Cellulophaga lytica
           DSM 7489]
 gi|324321557|gb|ADY29022.1| single-stranded-DNA-specific exonuclease RecJ [Cellulophaga lytica
           DSM 7489]
          Length = 562

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/578 (29%), Positives = 275/578 (47%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW     +    +   +     + +IVA++L+ R ++  + AK +  P +  L  DP +L
Sbjct: 2   RWTIKP-KPDAAKVAELQNALQVDEIVAKLLLQRGITTFEEAKKYFRPQLSDLH-DPYLL 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI QAI N E IM+FGDYDVDG  SVAL+  +L     N   YIPDR  +GY
Sbjct: 60  KDMDLAIARIEQAIANEENIMVFGDYDVDGTTSVALVSSYLQSYYPNVTTYIPDRYKEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G + + ++   +    LII +DCG  + D + YA  +G+D I+ DHH+  +    A A++
Sbjct: 120 GVSYAGIDYADDNDISLIIALDCGVKAVDKVAYAKEKGVDFIICDHHRPGATLPNAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +  R D       LC  GV F ++  +     Q        DL+  LDLVA A   D+VP
Sbjct: 180 DAKRNDCNYPYDELCGCGVGFKLIQALGSKRGQ-----TIEDLVPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G KA+I ++     +T  ++ ++I P INA GR+    
Sbjct: 235 ITGENRVLAYYGLQVINSTPRAGFKAIINQIKKDV-LTITDVVFVIAPRINAAGRMVHGL 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   + ++ E  A  ++  N +RR ++  + ++A  ++       ++    VV  
Sbjct: 294 HAVNLLTETNLEQAEEFAAAIEQYNADRRELDQEITKEALVQITDN--KEEKHFTSVVYN 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   + K   S RS++GFD+   +        + 
Sbjct: 352 ENWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYNALEAC--ADHIE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +      F+K     +   + TP   ID  LN + ++  L+ +
Sbjct: 409 QFGGHKYAAGLTLSEAQYDGFKKEFEKVVTKTIDPNLLTPEITIDAELNFNEISPKLMRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++   P+G GN +PVF   N +     + V    AHL++      S  + AI F +    
Sbjct: 469 IKQMEPFGPGNMSPVFMAENLQDTGYAKGVGQEEAHLKLAAVQNGSNPIGAIGFNLGN-- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  +    K       L  N W+G    QL++ D  
Sbjct: 527 --KLPLVQNKKPFSAVFSLDENEWQGVVSLQLKLRDIR 562


>gi|254294222|ref|YP_003060245.1| single-stranded-DNA-specific exonuclease RecJ [Hirschia baltica
           ATCC 49814]
 gi|254042753|gb|ACT59548.1| single-stranded-DNA-specific exonuclease RecJ [Hirschia baltica
           ATCC 49814]
          Length = 609

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 224/591 (37%), Positives = 358/591 (60%), Gaps = 8/591 (1%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
              AFLGVE S++G RW          +A  I+++ + PD++ ++L  R V++D A  + 
Sbjct: 18  TGPAFLGVEHSLTGRRWRVRP--VDDEKATEISRRLSKPDLIGKLLAGRGVTLDEADTYF 75

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+++ L PDP    D D A   I++A+ +  K  +  DYDVDG  S A++ ++      
Sbjct: 76  SPTLKALFPDPSSFADMDAACEVILEALVSGRKCAVLADYDVDGGTSAAILTKYFKAWDR 135

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              +Y+PDR+ +GYGP+    E    +GA+L++TVDCG+ + +AL+ A + G+DV+V+DH
Sbjct: 136 ELILYVPDRLTEGYGPSVEAFESLKEQGAELVMTVDCGAAAVEALEAAHSLGLDVVVLDH 195

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLL 239
           H ++SE  PA A+VNPNR D  SG GH+ AAGVVF++   + R+ RQ +  P     D +
Sbjct: 196 HLMQSEPPPAAAVVNPNRPDCKSGCGHMAAAGVVFVLTAGLNRLARQKSVAPAGGLPDPM 255

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LDL AL T+CD+ PL G+NRA+V  GL V +R  N GL AL +   + +P +  +  +
Sbjct: 256 KWLDLCALGTLCDMAPLKGVNRAFVNAGLKVLQRMDNVGLAALSQVSGVEAPKSVYHATF 315

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP +NAGGRIG+  + ++LL ++D +E   LA +L  LN+ R+ +E+ +L++A     
Sbjct: 316 LLGPRLNAGGRIGDPWIAAKLLATEDRKEALALAERLQALNEARKEIEAEILDEATRIAE 375

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED--GKGIGSGRSIE 417
           ++  +   A  IVV G+ WHPG++G++A RLKEKF RP+  I + E+      GSGRS+ 
Sbjct: 376 SRLVEKPDAGAIVVGGEGWHPGVIGIVAGRLKEKFHRPTIVIGWGEELGPVAKGSGRSVA 435

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
           G ++G +++ A +EGI++ GGGHAMAAGL++E        D+ ++        L    V 
Sbjct: 436 GVNLGNLIAKASKEGIILSGGGHAMAAGLSLEPSQLEAFRDYMEESTAEAKKELEQARVL 495

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
           ++DG+L+ ++ +  L+  ++ AGPYGAG+P P+FA  N +  ++R V + HL      +D
Sbjct: 496 ELDGLLSPASADGELLLSVDGAGPYGAGSPEPIFAMANVRSHNVRRVGVDHLSFEILGED 555

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
              L+AIAFR     LG+ ++   G+ MH+ G L  + WRG+ + Q  V D
Sbjct: 556 GGKLRAIAFRAADADLGQAIL--SGQMMHLAGKLKPDEWRGAGKVQFEVSD 604


>gi|42520197|ref|NP_966112.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42409935|gb|AAS14046.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 579

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 232/582 (39%), Positives = 340/582 (58%), Gaps = 15/582 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+   W     +    + L +TQ+  +P+I+AR+LV R V+I+ A DFL P IR L+
Sbjct: 7   KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D DKA  RI++AI N E + IFGDYDVDGA S AL+ R+L    +++ +YIPD
Sbjct: 65  PDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYG N   + +    G  L I+VDCG+ +Y  ++ A   G+D+IV+DHH    +  
Sbjct: 125 RVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247
            A A+VNPNRLD+ S   +L A GV FL++V + + LR+          DL  LLDLVAL
Sbjct: 185 SAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDV+ + GLNRA V +GL V   + N GL+ L + + I    +   LG+ IGP INA
Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIGE++LG+RLL +DD +E   +A+KL  LN  R+++E+  L +A A+          
Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
               ++    WH GI+G++A+RLKE+F  P+  IS   +G G  S RSI G DIG  V  
Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIGAAVLS 420

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A    ++++GGGH+MAAG +++      L DFF +   N +         K D ++ A A
Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N++L + L+  GP+G GNP P F     K++   V+ + H++      D+  ++AIAFR
Sbjct: 477 INLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVRAIAFR 535

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              T LG  +MQ   K   + G + +NYW G++  Q  + D 
Sbjct: 536 SANTHLGSAIMQGNVKA--ILGKISMNYWNGNEFVQFLIEDV 575


>gi|89889907|ref|ZP_01201418.1| single-stranded DNA-specific exonuclease [Flavobacteria bacterium
           BBFL7]
 gi|89518180|gb|EAS20836.1| single-stranded DNA-specific exonuclease [Flavobacteria bacterium
           BBFL7]
          Length = 565

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/580 (29%), Positives = 275/580 (47%), Gaps = 23/580 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           RW     Q  I     + Q+  I   +A +LV R V     AK F  P +  L  DP ++
Sbjct: 2   RWTLKP-QPDIATQEKLAQELGIDSFLAGLLVQRGVDAFAKAKSFFRPDLNELH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A +RI +AI N+E I+++GDYDVDG  SVALM  FL         YIPDR  +GY
Sbjct: 60  KDMDVAVQRIQKAIGNNENILVYGDYDVDGTTSVALMSTFLLSFYDRVATYIPDRYGEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YA  +GID I+ DHH+   +   A A++
Sbjct: 120 GVSYQGIDYAADNDFSLIIALDCGVKAIDKVAYAAEKGIDFIICDHHRPGKKLPNAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F +                   L+  LDLVA A   D+VP
Sbjct: 180 DPKRDDCTYPFDELCGCGVGFKLCQAFVEA-----NDWEFEMLIPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           ++G NR     GL V       G KA+I ++   + +T  ++ ++I P INA GR+  + 
Sbjct: 235 IVGENRILAYHGLNVINTSPRAGFKAIIHQLKKDT-LTITDVVFIIAPRINAAGRMKHAL 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               L+++DD +E + +A +++  N +RR  + ++ E+A+ +++    + ++    VV  
Sbjct: 294 HAVELMVTDDFKEAQRIAAEIEEYNADRREADRSITEEAKQQIINN--NEEERFTTVVFQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D     S RS+ GFD+   +        + 
Sbjct: 352 ENWHKGVIGIVASRLIETYYRPTLVFTKSGD-YLAASARSVSGFDVYNALEQC--SDYIE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT++  N+    D F++     +     TP  KID +L    ++     +
Sbjct: 409 QFGGHKYAAGLTLKPENYSLFKDRFEEVVCATIEKQHLTPEIKIDAMLPLENISPKFYRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNL--AHLQMTF--ESQDSETLQAIAFRVYG 550
           L+   PYG GN  PVF           + V     HL++       D   + AI F +  
Sbjct: 469 LQQMAPYGPGNMRPVFMTEKVMDTGYGKCVGKSEDHLKVKVVKNKNDRNGMDAIGFNLG- 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G+  +     +  +   +  N W G+   QL + D  
Sbjct: 528 ---GKSDLVKNKVKFDIAYTISENEWNGNISLQLLLKDIK 564


>gi|157825818|ref|YP_001493538.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia akari
           str. Hartford]
 gi|157799776|gb|ABV75030.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia akari
           str. Hartford]
          Length = 587

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/587 (37%), Positives = 329/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 4   QTSINGKIWQQKLIHEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D  KA  R V+AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMKKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNVFRDLNIICDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  ++  +L+ITVDCG+ +Y+A++YA +  +DVIVIDHH       
Sbjct: 122 RIAEGYGPTPFAMQKIKDKDTELLITVDCGAMAYEAIKYAKDLNLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSHLKKQNYFTQTMLQPNLMKYLDLVA 241

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+K L +   ++      +LG+++GP IN
Sbjct: 242 LGTVCDMMTLTGLNRAFVSSGLKVMQQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRIN 301

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 302 AGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKVIELLMIEEATEIALTQ----Q 357

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A RLKEKF +P   ++  + G G  S RSI G D G  + 
Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALND-GIGKASCRSILGIDFGAEII 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L   
Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINTLENYKHAEYDIDLTVD 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
            VN  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 477 GVNFHLMEELNTLEPFGQGNHEPIFKFDDLFVLKAYIVGSKHIKCMLVPNKRSFGNKALS 536

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 537 AIAFNSVGTSFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583


>gi|294501371|ref|YP_003565071.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium
           QM B1551]
 gi|294351308|gb|ADE71637.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium
           QM B1551]
          Length = 780

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 181/593 (30%), Positives = 294/593 (49%), Gaps = 29/593 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S  RW      E         +   I  +VA +L+NR ++  + A++FL+        DP
Sbjct: 4   SKKRWNVQECDE--QLVNEFVENLNITPLVASLLLNRGMTTVEAAREFLHVD-AQTFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI ++EKIMI+GDYD DG +S ++M+  L     + + YIP+R  
Sbjct: 61  FLLHDMDKAVARIQQAIDHNEKIMIYGDYDADGVSSTSVMLSALQQLGADVDFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +K    G QL+ITVD G ++ +   YA     D+I+ DHH+       AY
Sbjct: 121 EGYGPNKEAFDKISAGGYQLVITVDTGISAVEETAYARELNFDLIITDHHEPGPVLPDAY 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV F +   +   L +            LL+L  + T+ D
Sbjct: 181 AIIHPKLPGSTYPFKELAGVGVAFKLAHALLGELPE-----------HLLELAVIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRI 311
           +VPL+  NR    KGL   +     G++AL+    +      E+ +G+ + P INA GR+
Sbjct: 230 LVPLVDENRLIARKGLDYLKLTKRTGIEALLSVCGVKREEINEDTIGFAMAPRINAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            +++    LL++ +++E + LA ++D LN+ R+ + + + E+A   V +     +  SV+
Sbjct: 290 QDADPAVHLLMTTNAEEAKGLAKEIDALNKERQQIVNDITEEAVEFVESMYPPDEN-SVL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFDIGKMVSFAVE 430
           +VEG+ W+ G+VG++A+RL EKF RP+  +S + +     GS RSIEGFD+   +S    
Sbjct: 349 IVEGEGWNAGVVGIVASRLVEKFYRPTIVLSIDSENRIAKGSARSIEGFDLFANLSKC-- 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAG+T+   +   L     + A N++      P+  +D V     + +
Sbjct: 407 RDILPHFGGHPMAAGMTLNSDDVEELRRRLNEQASNVLTEQDFIPITSVDTVCTTEEITL 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             I+ + +  P+G  NP P     +    S+R +     HL++ FE     ++ A+ F  
Sbjct: 467 ENIEQMSALAPFGMHNPKPKVLIKDVHTTSMRKIGANKNHLKLVFED-SGVSVDAVGFG- 524

Query: 549 YGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               LG  L +     ++ + G L +N W    + QL V D S  E   F  +
Sbjct: 525 ----LGYILDEVSPIAKVSLVGELSINEWNNMHKPQLMVEDISVDEWQMFDYR 573


>gi|229586785|ref|YP_002845286.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia africae
           ESF-5]
 gi|228021835|gb|ACP53543.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia africae
           ESF-5]
          Length = 587

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/587 (37%), Positives = 330/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 4   QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           P+P  L D +KA  R V AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PNPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+K L +   +       +LG+++GP IN
Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEATKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A +LKEKF +P   I+  + G G  S RSI G D G  + 
Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
           +VN  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 477 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583


>gi|241116890|ref|XP_002401658.1| single-stranded DNA specific exonuclease RecJ, putative [Ixodes
           scapularis]
 gi|215493202|gb|EEC02843.1| single-stranded DNA specific exonuclease RecJ, putative [Ixodes
           scapularis]
          Length = 581

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 223/585 (38%), Positives = 333/585 (56%), Gaps = 14/585 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+PD
Sbjct: 1   SINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLLPD 58

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L D +KA  R V+AI N++KI IF DYDVDGA S AL+       ++  ++Y+PDRI
Sbjct: 59  PFHLLDMEKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLNIICDIYVPDRI 118

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH        A
Sbjct: 119 AEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILPDA 178

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVALA 248
            A+VNPNR+D+ S   HL A GV FL +  I   L++ N         +L+  LDLVAL 
Sbjct: 179 VAIVNPNRIDEKSEYKHLAAVGVAFLFVTAILSNLKKQNYFTQPMLQPNLMKYLDLVALG 238

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
           TVCD++ L GLNRA+V  GL V +++ N G+KAL +   ++      +LG+++GP INAG
Sbjct: 239 TVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKALYDMAGLNEIPKCYHLGFILGPRINAG 298

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q +
Sbjct: 299 GRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQ----QDS 354

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S++ +  + WHPG++G++A RLKEKF +P   I+  + G G  S RSI G D G  +  A
Sbjct: 355 SLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIINA 413

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  ++V
Sbjct: 414 KSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVNSV 473

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544
           N  L++ L +  P+G GN  P+F F +  +    +V   H++           ++ L AI
Sbjct: 474 NFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCILVPNKRGFGNKALSAI 533

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 534 AFNSVGTSFEDVLLSPKAKNITAIGTLKTNNWQDNYTIQLIIKDI 578


>gi|323490005|ref|ZP_08095226.1| single-stranded-DNA-specific exonuclease recJ [Planococcus
           donghaensis MPA1U2]
 gi|323396301|gb|EGA89126.1| single-stranded-DNA-specific exonuclease recJ [Planococcus
           donghaensis MPA1U2]
          Length = 780

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/592 (33%), Positives = 303/592 (51%), Gaps = 27/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S  RW      E   +   I  +  I  ++A++LV R + + + A+ F+   +   M DP
Sbjct: 4   SKKRWRLTTPDE--QQVQDIQNELNISSVLAKILVTRGLNTAEAARSFMKMDVSG-MHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D D A  RI QAI N EKI+++GDYD DG  S  +MM  L     + +  IP+R  
Sbjct: 61  YLMKDMDIAIARIRQAIDNQEKIVVYGDYDADGVTSTTVMMTALQDLGADVSFMIPNRFK 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  L ++  + G +LI+TVD G +  + + +A N G+DVI+ DHH +  +   A 
Sbjct: 121 HGYGPNTDLFQQAFDNGTKLIVTVDNGISGIEQVDFANNLGMDVIISDHHDIGEQLPNAL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +     G L   GV F +   +Y  +              L++L A+ TV D
Sbjct: 181 AIVHPRHPEGHYPFGELAGVGVAFKMAHALYEEVPD-----------HLIELTAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +VPL G NR +V +GL       +P + AL E   I    IT E +G+M GP INA GR+
Sbjct: 230 LVPLHGENRLFVKEGLAALIDSPSPAIGALCEVAGIKQQDITEETIGFMFGPRINAIGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            +++   ++ +++D  E   LA  LDVLN+ R+ +   + E+A  +V  Q        V+
Sbjct: 290 QDADPAVQMFLTEDPAEARSLASGLDVLNKERQAIVKQITEEAMLQV-EQRYPEGVPRVL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV  + W+PG+VG++A++L EKF RPS  +S   E+GK  GS RSI+GF +      A  
Sbjct: 349 VVAQEGWNPGVVGIVASKLTEKFYRPSIVLSLNPENGKAKGSARSIDGFHLY--NELAKN 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAG+T+E  +   L +   + A   + A    PV  ID  L    ++I
Sbjct: 407 RDILPHFGGHPMAAGMTLEASDVDELRERLIRQAETSLTAEDLLPVVDIDIPLRLDEIDI 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             I+ + S  P+G G   P F   +  + SIR +     HL+M   +Q + TL A+ F +
Sbjct: 467 TAIESMRSLAPFGMGFAKPKFYLESVHVSSIRKIGAAQNHLKMEL-TQHAVTLDAVGFGL 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               +G+ L  +   ++ V G L VN W G K+ QL V D    +   F  +
Sbjct: 526 G--SVGDEL--TPDVKIDVIGDLQVNEWNGRKKPQLMVEDVRTDQWQLFDIR 573


>gi|260459842|ref|ZP_05808096.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium
           opportunistum WSM2075]
 gi|259034644|gb|EEW35901.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium
           opportunistum WSM2075]
          Length = 593

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 305/587 (51%), Positives = 381/587 (64%), Gaps = 1/587 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           + FL V  S +G  W   L +     ALAI Q H +PDIVARVL  R V+ D  + FL+P
Sbjct: 6   RLFLDVRQSATGLAWEHRLTERQDMIALAIAQGHGVPDIVARVLAGRGVTADETERFLDP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           +IR L+PDP  LTD D+AA RI  A+   EK+ IFGDYDVDGAAS AL+ RFL+H SV +
Sbjct: 66  TIRDLLPDPASLTDMDRAAARIAAAVMAKEKVAIFGDYDVDGAASSALLKRFLTHFSVPS 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPNP  M + ++ GA LI+TVDCG+ S  ++  A   G DV+V+DHHQ
Sbjct: 126 EIYIPDRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAVSVDAANAAGADVVVLDHHQ 185

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           V      A A+VNPNR DDLSGQGHLCAAGVVFL LV   R+LR     P    L   LD
Sbjct: 186 VGGALPAAIAVVNPNRDDDLSGQGHLCAAGVVFLALVQTARVLRGLTDAPPPDLLSL-LD 244

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           L ALATVCDVVPL G+NRA+VVKGL VAR+Q N GL AL     I  PI+  +L Y+IGP
Sbjct: 245 LAALATVCDVVPLTGVNRAFVVKGLQVARQQKNEGLAALARVSRIGEPISTFHLAYLIGP 304

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRIG++ LGSRLL +DD  E   +A  LD LNQ R+LME  ML  A A+   +  
Sbjct: 305 RINAGGRIGDAALGSRLLATDDPVEARTIAETLDRLNQERQLMEQEMLAAARAEADAELA 364

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                +++V   + WHPGIVGLLA+RLK+   RP+FAI+F   G G GSGRS+ GFD+G+
Sbjct: 365 GGSGPAIVVTASNNWHPGIVGLLASRLKDHARRPAFAIAFNAVGIGTGSGRSVSGFDLGR 424

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +V  A   G++VKGGGH MAAG+TVER   G L  FF++ A   V  L       IDG L
Sbjct: 425 LVREAATAGLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQDEESLAIDGAL 484

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
            A    + L+D LE AGP+GAG+  PVF  P H+L   R V   H++   +S     +QA
Sbjct: 485 AAEGATLGLLDALEKAGPFGAGHVAPVFVLPRHRLADARSVGTNHIRCELQSDSGGRIQA 544

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAFR   T LGEFL ++RGK +HV G L  N+W G++  Q R++DA+
Sbjct: 545 IAFRAVDTVLGEFLFKNRGKTVHVAGSLSGNHWNGNRTVQFRIIDAA 591


>gi|238650226|ref|YP_002916077.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia peacockii
           str. Rustic]
 gi|238624324|gb|ACR47030.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia peacockii
           str. Rustic]
          Length = 587

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/587 (37%), Positives = 329/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 4   QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D +KA  R V AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+K L +   +       +LG+++GP IN
Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVIQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A +LKEKF +P   I+  + G G  S RSI G D G  + 
Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
           +VN  L++ L +  P+G  N  P+F F +  +    +V   H++           ++ L 
Sbjct: 477 SVNFPLMEELNTLEPFGQENHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   + L+  + K +   G L  N W+ +   QL + D 
Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583


>gi|312110096|ref|YP_003988412.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           Y4.1MC1]
 gi|311215197|gb|ADP73801.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           Y4.1MC1]
          Length = 785

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/589 (31%), Positives = 301/589 (51%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E I     + ++  I  ++A +LV+R V + + A  FL P ++    DP +L
Sbjct: 7   RWDVKRPDENI--VKHLVEQLRIDPLIATLLVHRGVRTAEEANAFLYP-LKQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A  RI +AI + E I+++GDYD DG +S  +M+  L       + YIP+R  +GY
Sbjct: 64  DGMERAVVRIQRAIQDGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        ++G  LIITVD G  +   +  A   G+DVI+ DHH+V      AY ++
Sbjct: 124 GPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPTLPEAYEII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLD+ A+ T+ D+V 
Sbjct: 184 HPKKPGSTYPFRELAGVGVAFKVAHALLGEVP-----------RYLLDVAAIGTIADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R+    GL+AL  +  I    I  + +G++I P +NA GR+GE+
Sbjct: 233 LTGENRVLVAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +   RLL+++D +E + LA ++D LN+ R+ + + + E+A   +  Q    +   V+VV 
Sbjct: 293 DPAVRLLMTEDEEEAKRLAKEMDDLNRERQQLVAEIAEEAAQIIQEQFPPSENK-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A+RL E+F RP+  +S + E G   GS RSI GFD+    S +    I
Sbjct: 352 KEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDM--FSSLSTCRDI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH MAAG+T+   + G L       A +++     TP+  ID V + S + +A+ 
Sbjct: 410 LLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + LE   P+G GN  P+F   N  ++++R V    +HL+  F +Q+   + ++ F     
Sbjct: 470 EQLEKFAPFGVGNAKPLFLMENVSVETMRRVGADQSHLKAVF-AQNGAAIDSVGFGFGYL 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   ++ V G L +N W   ++ QL + D +  E   F  +
Sbjct: 529 ----RDEIAPDAKVSVVGELVINEWNHLRKPQLMIYDMAVHECQLFDIR 573


>gi|194017157|ref|ZP_03055769.1| recombination protein J [Bacillus pumilus ATCC 7061]
 gi|194011025|gb|EDW20595.1| recombination protein J [Bacillus pumilus ATCC 7061]
          Length = 774

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 182/593 (30%), Positives = 285/593 (48%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
           +S  RW          +  ++++   I  + A +LV R +   + A+ FL         D
Sbjct: 3   LSKMRWEY--EHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L    +A  RI +AI   E I+IFGDYD DG  S ++++  L   S   + YIPDR 
Sbjct: 60  PFLLKGMKEAVERINKAIEEQESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN         +GA L+ITVD G  + +  + A   G+D+I+ DHH+   E   A
Sbjct: 120 KEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEIGLDLIITDHHEPSEELPEA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+V+P +         L   GV F V   +   L              LLDL A+ T+ 
Sbjct: 180 LAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLP-----------TQLLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           D+VPL   NR    KGLM  R+   PGLKAL++    +      E +G+ I P +NA GR
Sbjct: 229 DLVPLHDENRWLAKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+++D  E E LA  +  LN+ R+ + S + E+A   V    DD    S 
Sbjct: 289 IEQADPAVHLLMTEDKDEAEELARFVQELNKERQKIVSTITEEAIQMVEETGDDQ---SA 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L + F RP+  +  +E+ +   GS RSI GFD+   +S   
Sbjct: 346 IVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFHLSKC- 404

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L +   ++A+  +      P+ ++D V     + 
Sbjct: 405 -RDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I+ +    P+G  NP P     + +L+ IR +     H++M+ + +D + L  + F 
Sbjct: 464 VEAIEEVGMLSPFGMQNPKPFIMIEDVRLEEIRTIGANQNHIKMSLKDED-QLLDCVGFH 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                         G R+ V G + +N W   K+ QL + DA   E   F  +
Sbjct: 523 QGQLK----EEVVTGSRISVIGEMSINEWNNRKKPQLMLKDARVDEWQLFDLR 571


>gi|260575454|ref|ZP_05843453.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sp. SW2]
 gi|259022374|gb|EEW25671.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sp. SW2]
          Length = 581

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 247/590 (41%), Positives = 344/590 (58%), Gaps = 11/590 (1%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           M ++AFL VE S +G RWV    ++    A A+ Q   +P  +   LV R V+   A  +
Sbjct: 1   MTNRAFLNVEASATGRRWVGPGTEQD-RLAEAMAQVTHLPLALCHTLVKRGVAPGEAAAY 59

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L PS+R L+PDPL L D  KAA R VQA+   ++I +F DYDVDG AS AL++ +L    
Sbjct: 60  LAPSLRDLLPDPLSLRDMGKAAARFVQAVKARQRIAVFADYDVDGGASAALLLVWLRAMG 119

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
             A +YIPDRI +GYGPN   M   +     +II VDCG+ S++ +  A     DV+V+D
Sbjct: 120 QGATLYIPDRIDEGYGPNAPAM-AALAAAHDVIICVDCGTLSHEPIAAAKAA--DVLVLD 176

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HH       PA A+VNPNR D+    GHLCAA VVFL+LV   R LR +       DL++
Sbjct: 177 HHLGAETLPPALAVVNPNRQDEDGSLGHLCAASVVFLLLVEANRQLRAEG--TPGPDLMA 234

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           +LDLVALATV DV PL+G+NRA+V +GL V  R+   GLKAL +   +    T   LG++
Sbjct: 235 MLDLVALATVADVAPLLGVNRAFVRQGLRVMARRERIGLKALADVARMDQAPTPYALGFL 294

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRIG ++LG+RLL +DD  E   LA +LDVLN  RR +E+A+   A A+   
Sbjct: 295 LGPRINAGGRIGAADLGARLLATDDPHEAAALAERLDVLNTERREIEAAVRASALAQAEA 354

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +  D     ++   G+ WHPG+VG++AARLKE   RP+  I   +  +G GSGRS+ G D
Sbjct: 355 RGFDG---PLVWAAGEGWHPGVVGIVAARLKEGANRPAVVIG-FDGDEGKGSGRSVSGVD 410

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +     EG++ +GGGH MAAGL++ R       +                   +ID
Sbjct: 411 LGAAIQRLASEGLIGRGGGHKMAAGLSLSRAQLEPAMERLGALLAKQGAGQGGPADLRID 470

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
           G+L   A  +AL++ LE+AGPYGA +P P FAF + +  S R +  +HL+++F       
Sbjct: 471 GLLMPGAATMALVEQLEAAGPYGAASPAPRFAFAD-QAVSARRMGESHLRLSFSDGLGAR 529

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           L+A+AF  +  PLG  L      R H+ G L +N + G  + QLR+ DA+
Sbjct: 530 LEAVAFGAFDGPLGPMLENPGAARFHLAGRLEINSYGGRNKVQLRLEDAA 579


>gi|83858254|ref|ZP_00951776.1| single-stranded-DNA-specific exonuclease RecJ [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853077|gb|EAP90929.1| single-stranded-DNA-specific exonuclease RecJ [Oceanicaulis
           alexandrii HTCC2633]
          Length = 592

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 226/595 (37%), Positives = 332/595 (55%), Gaps = 6/595 (1%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
             +   GV  S+ G  W      +      AI +   + D + R++  R ++ + A  FL
Sbjct: 1   MSEPLFGVRQSLGGRSWRLKAADDN--AIQAICRATGVSDALGRLMAARGLTAEDAPAFL 58

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R   PDP  L   D+AARRI  A+   ++I +F DYDVDGA S A +  +L     
Sbjct: 59  APKLRDSFPDPSTLKGMDEAARRIWDALDAGDRIALFADYDVDGATSAAQLGGWLRTLGA 118

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           +  +Y+PDRI +GYGPN   ++    +GA+L+IT+DCG+ S   L  A   G+ V+VIDH
Sbjct: 119 DPIIYVPDRIEEGYGPNAPALKSLKEQGARLVITLDCGAASVGPLTAAHEMGLPVVVIDH 178

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLL 239
           H +  E  PA ALVNPN+  D+SG GHL AAGV F++L  + R  R+          ++L
Sbjct: 179 HLMDGEIPPADALVNPNQPGDVSGCGHLAAAGVTFVLLAALNREGRRRGAFKGQAEPNVL 238

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
              DL AL T+CDVV L G+NRA V +GL V      PG+ AL     +  P +  + G+
Sbjct: 239 DFADLAALGTICDVVSLTGVNRAIVAQGLKVMSAWSRPGMAALAAAAGVQGPASPYHAGF 298

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGR+G+S+LG+RL+++ D +E   +A  LD LN  RR +E+ +L+QA+A+V 
Sbjct: 299 LLGPRINAGGRVGQSDLGARLMMTQDPKEAAHIAQTLDALNAERRAIETEVLDQAQAQVE 358

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEG 418
               +     +++  G+ WHPG++G++A R+KE+F RP+  I    E G G GSGRS  G
Sbjct: 359 ALKLE-DDTPILIASGEHWHPGVIGIVAGRIKERFNRPAIVIGVDPETGLGKGSGRSCTG 417

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            ++G  V+ A EEG+LV GGGHAMA GLTV+    G L D+          A      + 
Sbjct: 418 VNLGAAVAAAREEGLLVAGGGHAMACGLTVDVNRIGELTDYLTARLKQEWIAAEEARTYS 477

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           +D V++ SAV+    + L +A PYG GNP P FAF + +    + V   H++ TFES   
Sbjct: 478 VDAVISPSAVSFEFCEALSAAEPYGMGNPEPRFAFSSLRRTYAQRVGTDHVRFTFESPGG 537

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             L  I+FR    P+G+ L+       HV G L     R  ++ +L + D +  +
Sbjct: 538 GRLTGISFRSADQPMGQALLNGPDGLWHVAGKLRAEDNRYGRKAELHLEDLAKAD 592


>gi|329114086|ref|ZP_08242850.1| Single-stranded-DNA-specific exonuclease RecJ [Acetobacter pomorum
           DM001]
 gi|326696625|gb|EGE48302.1| Single-stranded-DNA-specific exonuclease RecJ [Acetobacter pomorum
           DM001]
          Length = 611

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 229/599 (38%), Positives = 330/599 (55%), Gaps = 12/599 (2%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRAL---AITQKHAIPDIVARVLVNRNVSIDYAK 58
           +  A LGVE S  G RWV   G E         A+ Q+  IP+IV R+L  R ++ D A 
Sbjct: 17  STPAVLGVEASFVGRRWVWRAGAEDPALMRLGAALAQQLGIPEIVGRLLAMRQITPDQAP 76

Query: 59  DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118
            FL P +R LMPDP  LTD DK A R+ +A+ N E I IFGDYDVDGA + A++  F   
Sbjct: 77  HFLEPKLRALMPDPSTLTDMDKVAARMAKAVQNREVIGIFGDYDVDGACASAILASFFEE 136

Query: 119 CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178
                + +IPDR+ +GYGPN + ++  + +GA ++I VDCG+ S D L   T++  DVIV
Sbjct: 137 LGCTVHTHIPDRMTEGYGPNVAALDNLVAQGASILICVDCGTASADILCQMTDK-ADVIV 195

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LN 235
           +DHH+ +    P  A VNPNR D  SG  H+CAA + FL  V   R LR+ +        
Sbjct: 196 LDHHKSEDALPPILATVNPNRPDCPSGLHHICAAALAFLAAVATTRDLRRADWFTANQPP 255

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
            DL+  LDLVALATVCDV+PL GLNRA+V +GL +  R+   GL AL+E   ++    A 
Sbjct: 256 PDLMRQLDLVALATVCDVMPLHGLNRAFVTQGLKIMARRQRTGLNALMEIAGVTKAPDAF 315

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           + G+ +GP INAGGRI E+ LG RLL   D+ E   +A +LD +N+ R+ +E+ +L+ A 
Sbjct: 316 SCGFALGPRINAGGRIAEAALGLRLLRCPDNFEARQMAERLDAVNRRRQGVEADILDLAM 375

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
            +   Q       +VI++ G  WHPG+VG++A R+KE+F RP+   + +EDG   GSGRS
Sbjct: 376 QQAEAQ--KKAGHAVIMLAGKDWHPGVVGIVAGRIKERFNRPALVGAEQEDGTIKGSGRS 433

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           + G D+G ++  A + G+L  GGGHAMAAG ++          F               P
Sbjct: 434 VPGLDLGTVIIAARQAGMLKTGGGHAMAAGFSLTADKLEEFHTFLDTRLAQAATLPEKVP 493

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF 533
              +D V+  S     L   + +  P+GAGNP P+ A P   +     +      L++  
Sbjct: 494 -LTVDAVVAISGATAELAQDMGALAPFGAGNPEPLLAIPRVTVIRADRIGRDGNTLRLLL 552

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +++  L+A+ FR +  PL   L  +    +H+ G+L    W G       + DA+  
Sbjct: 553 KGENNGRLKALLFRAHENPLAAKLEDTTRPALHLAGYLRAESWNGRTDATFFIQDAAAA 611


>gi|325105083|ref|YP_004274737.1| exonuclease RecJ [Pedobacter saltans DSM 12145]
 gi|324973931|gb|ADY52915.1| exonuclease RecJ [Pedobacter saltans DSM 12145]
          Length = 577

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/578 (29%), Positives = 275/578 (47%), Gaps = 19/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
            RW   L          + Q+  I DI+A +L NR ++    AK F  P ++ L  DP +
Sbjct: 14  KRWAEHLI-TNFEAVDKLAQELNISDILAHMLYNRGITSFSEAKAFFRPELQHLH-DPFL 71

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   ++A  RI +AI  +E I+++GDYDVDG  SVAL+  F      N + YIPDR ++G
Sbjct: 72  MNGMEEAVARIEEAIRENENILVYGDYDVDGTTSVALVYSFFKEIYPNISYYIPDRYIEG 131

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++   +    LII +DCG  + D ++YA ++GID I+ DHH    E   A A+
Sbjct: 132 YGISSQGIDFAADNDVSLIIALDCGIKAVDKVEYAKSKGIDFIICDHHLPGEEIPAAVAV 191

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P RLD       L   G+ F +                   +   LDLVA++   D+V
Sbjct: 192 LDPKRLDCNYPYKELSGCGLGFKLAQAYAEK-----NDVPFEKVCEYLDLVAVSIASDIV 246

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL         GLKALIE    +   T  ++ + IGP INA GRI ++
Sbjct: 247 PITGENRVLAYYGLQKLNNNPCNGLKALIELSGKTDRFTISDIVFSIGPRINAAGRIDDA 306

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLI+  +Q  E     +++ N  R+  ++ + EQA   + +   ++      VV 
Sbjct: 307 KHSVRLLIASSTQLAEDAGFIINLKNTERKEYDTNITEQALNMIGS-SPEMIGRKSTVVY 365

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G++G++A+RL EK+ +P+  ++ + +G   GS RS+ G+D+ +         +L
Sbjct: 366 DKNWHKGVIGIVASRLTEKYYKPTVVLT-DSNGHVAGSARSVLGYDLYEA--LCECSDLL 422

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAGLT++  N  +  + F+    + +   +      ++  +  S +      
Sbjct: 423 EQFGGHKYAAGLTMKPENVNKFIERFETVVASSITEEMLVQQISVEKCIGLSDITPKFFR 482

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +L    P+G  N  P+F            +V   HL+M+   +DS   + I F      L
Sbjct: 483 ILNQFAPFGPQNMVPIFMTREVYSYGYGSIVGNNHLKMSVRQKDSSVFECIGFG-----L 537

Query: 554 GEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           G++L Q +RG    +   +  N W+  +  QL +    
Sbjct: 538 GDYLEQINRGTPFDICYTIEENVWKDRRSIQLNIKGIK 575


>gi|254502532|ref|ZP_05114683.1| single-stranded-DNA-specific exonuclease RecJ [Labrenzia alexandrii
           DFL-11]
 gi|222438603|gb|EEE45282.1| single-stranded-DNA-specific exonuclease RecJ [Labrenzia alexandrii
           DFL-11]
          Length = 606

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 278/590 (47%), Positives = 374/590 (63%), Gaps = 3/590 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            +  LGV  S +   W   L       A+AI+Q+H +PD+++RV+  R V+   A  FL 
Sbjct: 11  GRLVLGVARSANDNAWRERLSAAETRAAMAISQQHGLPDVLSRVMAARGVAAADASAFLE 70

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           PS++ LMPDP  L D D A  R+  A+   +KI IFGDYDVDGA S A++  +L    ++
Sbjct: 71  PSLKTLMPDPSSLVDMDAAVARVADAVQTGKKIAIFGDYDVDGATSSAVLANYLQWLGLD 130

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             ++IPDRI++GYGPN   +E     GA+L+IT+DCGSTS++A + A    +DV+VIDHH
Sbjct: 131 PVIHIPDRIIEGYGPNGPAIENLQAGGAELLITLDCGSTSFEAFETAKKLNLDVVVIDHH 190

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240
           QV        ALVNPNR DDLSGQGHL A GV FL +V + R LRQ          DL++
Sbjct: 191 QVGETLPEVRALVNPNRQDDLSGQGHLAAVGVTFLFIVGLNRELRQRGAFSGRQAPDLMA 250

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           LLDLVAL TVCDVVPL GLNRAYV +GL V  ++ N GL AL +   +S      +LG++
Sbjct: 251 LLDLVALGTVCDVVPLQGLNRAYVTRGLAVMHQRQNHGLTALSDTARVSGKPAPYHLGFL 310

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL + D  E   +A +LD LN  R+ ME+ MLEQA A+   
Sbjct: 311 IGPRINAGGRIGDAALGARLLTTADPHEARAIAERLDQLNTERQAMEAVMLEQAGAEAAI 370

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
             +     +V++   + WHPGIVGL+A+RLKE   RP+FAI+++E GKG GSGRSI G D
Sbjct: 371 AIEHR-DPAVLLTGSNDWHPGIVGLIASRLKEAHRRPAFAIAYDETGKGTGSGRSINGVD 429

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +GK V  AV++G+L KGGGHAMAAGLTV +     L  FF     + V A       KID
Sbjct: 430 LGKAVRKAVDDGLLEKGGGHAMAAGLTVRQEKAADLEAFFNDVLKDDVEAATAHRELKID 489

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
             L A+  N+ L++MLE AGPYGAG+  PVFAFP H++    VV   H++ T  + D   
Sbjct: 490 AALTATGANLDLMNMLEKAGPYGAGHSEPVFAFPAHRISFADVVGKGHVRATLAAGDGTA 549

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           L+ I F+    P G+ L++ RG+ +HV G L ++ W+G+ + QLR+LD +
Sbjct: 550 LKGICFKAEDKPHGQMLLEGRGRNLHVAGTLSIDTWQGTPKVQLRILDVA 599


>gi|212638568|ref|YP_002315088.1| Single-stranded DNA-specific exonuclease RecJ [Anoxybacillus
           flavithermus WK1]
 gi|212560048|gb|ACJ33103.1| Single-stranded DNA-specific exonuclease RecJ [Anoxybacillus
           flavithermus WK1]
          Length = 789

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 182/593 (30%), Positives = 292/593 (49%), Gaps = 31/593 (5%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
            S  RW     Q    +   I Q   I  +VA +LV+R   +++ A+ F     +     
Sbjct: 6   ASKTRWNIQ--QVNEQQVQMIAQALHITPLVASLLVSRGYHTVEAARSFFER--KQSFHS 61

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L D +KA  RI +AI N E I++FGDYD DG +S  +M+  L     N + YIP+R 
Sbjct: 62  PFLLNDMEKAVERIEKAITNDEHILVFGDYDADGVSSTVVMVSALREKGANVSFYIPNRF 121

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN         +G  LIITVD G ++      A   GID+I+ DHH+       A
Sbjct: 122 TEGYGPNEQAFRLAKQQGVSLIITVDTGISALHEANVAKQLGIDLIITDHHEPGPVLPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA ++P    +     HL   GV F +   +   +               LD+VA+ T+ 
Sbjct: 182 YATIHPKISPN-YPFKHLAGVGVAFKLAHALIGRVP-----------YEWLDVVAIGTIA 229

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+VPL   N      G+   R+    GL+AL ++  +S     E+ + +MIGP +NA GR
Sbjct: 230 DLVPLQDENHLLARLGIEQFRQTNRLGLQALCKQCGVSHTAVTEDTIAFMIGPRVNAAGR 289

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  ++   +LL++ D+ E +MLA ++D +N+ R+ + + + E+A   V     D     V
Sbjct: 290 LDCADPAVQLLLTTDAHEADMLAEQIDAMNRERQQLVNEITEEAIQLVEQHYRD---DRV 346

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +VV  + W+ G++G++A+RL EKF RP+  +S  +E G   GS RSIEGFD+    + + 
Sbjct: 347 LVVAKEGWNVGVIGIVASRLVEKFYRPTIVLSIDQEKGIAKGSARSIEGFDL--FANLSN 404

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L     + A   +      P+  ID   + S V+
Sbjct: 405 CRDILPHFGGHPMAAGMTLSFHDVDELRRRLNEAAEQQLTDEHFIPITHIDLCCSISDVS 464

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           + LI+ +    P+G GNP P   F + +L ++R +     HL++   +++ +TL+AI F 
Sbjct: 465 LELIEQMNRLAPFGMGNPKPRVLFQHVQLDTLRKIGTDQNHLKLLL-AEEGKTLEAIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       +   R+ + G L +N W   ++ QL + D +  E   F  +
Sbjct: 524 FGNIG----DEIAPNVRLSIVGELAINEWNNFRKPQLMIQDIAVNEWQLFDMR 572


>gi|295399344|ref|ZP_06809326.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978810|gb|EFG54406.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 785

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 183/589 (31%), Positives = 301/589 (51%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E I     + ++  I  ++A +LV+R V + + A  FL P ++    DP +L
Sbjct: 7   RWDVKRPDENI--VKHLVEQLRIDPLIATLLVHRGVRTAEEANVFLYP-LKQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A  RI +AI + E I+++GDYD DG +S  +M+  L       + YIP+R  +GY
Sbjct: 64  DGMERAVVRIQRAIQDGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        ++G  LIITVD G  +   +  A   G+DVI+ DHH+V      AY ++
Sbjct: 124 GPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPTLPEAYEII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLD+ A+ T+ D+V 
Sbjct: 184 HPKKPGSTYPFRELAGVGVAFKVAHALLGEVP-----------RYLLDVAAIGTIADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R+    GL+AL  +  I    I  + +G++I P +NA GR+GE+
Sbjct: 233 LTGENRVLVAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +   RLL+++D +E + LA ++D LN+ R+ + + + E+A   +  Q    +   V+VV 
Sbjct: 293 DPAVRLLMTEDEEEAKRLAKEMDDLNRERQQLVAEIAEEAAQIIQEQFPPSENK-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A+RL E+F RP+  +S + E G   GS RSI GFD+    S +    I
Sbjct: 352 KEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDM--FSSLSTCRDI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH MAAG+T+   + G L       A +++     TP+  ID V + S + +A+ 
Sbjct: 410 LLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + LE   P+G GN  P+F   N  ++++R V    +HL+  F +Q+   + ++ F     
Sbjct: 470 EQLEKFAPFGVGNAKPLFLMENVSVETMRRVGADQSHLKAVF-AQNGAAIDSVGFGFGYL 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   ++ V G L +N W   ++ QL + D +  E   F  +
Sbjct: 529 ----RDEIAPDAKVSVVGELVINEWNHLRKPQLMIYDMAVHECQLFDIR 573


>gi|308070367|ref|YP_003871972.1| Single-stranded-DNA-specific exonuclease recJ [Paenibacillus
           polymyxa E681]
 gi|305859646|gb|ADM71434.1| Single-stranded-DNA-specific exonuclease recJ [Paenibacillus
           polymyxa E681]
          Length = 798

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/592 (30%), Positives = 299/592 (50%), Gaps = 26/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S +RW     +  +  A  +T++  I  +++R+LVNR V+    A  FL  S+  +  DP
Sbjct: 4   SQYRW--KTPEANLEAAQLLTEELGISPLLSRLLVNRGVTTAGEANRFLYGSVDDVH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L    +A  RI QA+   E I+I+GDYD DG +S +LM++ +     + ++YIP R  
Sbjct: 61  FLLLGMKEAVPRIRQALERGEHILIYGDYDADGVSSTSLMIQLMRFLKASYDIYIPHRSN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++    +G  L+ITVD G ++ + + YAT+ GIDVIV DHH+  +    AY
Sbjct: 121 EGYGLHNHALDWAHQQGVTLVITVDTGISAVEQIAYATSLGIDVIVTDHHEPPAVLPEAY 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
            L+NP           L   GV   +   +   + +              ++ A+ TV D
Sbjct: 181 TLINPKLPGCPYPFKGLAGVGVALKLAQALLGEVPE-----------EWFEIAAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311
           ++PL G NR  V KG+   R    PG++AL+    +        N+ + + P INA GR+
Sbjct: 230 LMPLHGENRTMVRKGIQSMRNSAFPGIRALLHVAGVDISTVTSVNIAFALAPRINASGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL ++  +E + LA  LD+LN+ R+ +   ++EQAE ++ ++ +  +  SVI
Sbjct: 290 DHAGRAVSLLTTEKEEEADQLAHALDLLNRERQQVVERIVEQAEQQLASKLNGGKLPSVI 349

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G+ W+ G+VG++A++L +++ RP+  +  + E G   GS RSI   DI         
Sbjct: 350 VLAGEGWNVGVVGIVASKLLDRYYRPTIILGIDAETGTCKGSARSIPALDIYSA--LTDS 407

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH  AAG+T+ R N     +   ++A +I+      PV + D V     V++
Sbjct: 408 HELMEHFGGHPSAAGMTLSRDNLELFEEQLNRYAGSILTPEDLIPVAEADMVCRMDEVSL 467

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            +++ LE   P+G GNP+P F     +L+  R +     H+++  E Q+   L AIAFR 
Sbjct: 468 QVVEELELLQPFGMGNPSPRFVLQGLQLREARKMGREKNHVKLLLE-QNGLPLDAIAFRR 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               L +FL Q     + + G L +N W G +  QL + D        F  +
Sbjct: 527 GD--LADFLQQQT--EIDLLGELSINEWNGKRSLQLMMQDIRVQAPQIFDYR 574


>gi|305665887|ref|YP_003862174.1| single-stranded-DNA-specific exonuclease recJ [Maribacter sp.
           HTCC2170]
 gi|88710662|gb|EAR02894.1| single-stranded-DNA-specific exonuclease recJ [Maribacter sp.
           HTCC2170]
          Length = 562

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/578 (29%), Positives = 279/578 (48%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +   ++    +  +V  +L+ R ++  D AK F  P +  L  DP ++
Sbjct: 2   RWTLKPKPEQK-QIEELSSALKVDGLVGTLLIQRGITTYDQAKKFFRPELTDLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI +AI N E I+++GDYDVDG  SVAL+  +L     N   YIPDR  +GY
Sbjct: 60  KDMDLAVARIEKAIANDENILVYGDYDVDGTTSVALVSSYLLQGYPNVATYIPDRYDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LI+ +DCG  + D + YA ++GID I+ DHH+   +   A A++
Sbjct: 120 GVSYKGIDFAEDNDFALIVALDCGVKAIDKVTYANDKGIDFIICDHHRPGDQLPDAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +       NK     DL+  LDLVA A   D+VP
Sbjct: 180 DPKREDCDYPYDELCGCGVGFKLIQALAS-----NKGETIDDLVMYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V   +   G KA+I ++   + +T  ++ ++I P INA GR+    
Sbjct: 235 MTGENRVLAYFGLKVINAEPRIGFKAIINQIK-KNELTITDVVFIIAPRINAAGRMKHGQ 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL+ ++ ++ E++A +++  N +RR ++  +  +A  ++       ++    VV  
Sbjct: 294 HAVNLLVEENLEQAEVIAKEIEQFNFDRRNLDQEITAEALVRIKEN--KEEERFTSVVYK 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           D WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 DSWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALQACSEH--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +      F++   + +   + TP   +D  ++ S +   L  +
Sbjct: 409 QFGGHKYAAGLTLLPEQYEPFKAKFEQVVADTIEPHLLTPEINVDNSISLSDITPKLYRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVV--NLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +    P+G GN  PVF   N K     + V     HL++      S ++  I F +    
Sbjct: 469 IRQFAPFGPGNMTPVFMAENLKDSGYAKGVGEGEKHLKLAVTQNGSRSIGGIGFNLGD-- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  +    K       +  N W GS R QL++ D  
Sbjct: 527 --KMAIVKNTKPFDAVFSIDENEWNGSVRLQLKLRDIK 562


>gi|157693166|ref|YP_001487628.1| recombination protein J [Bacillus pumilus SAFR-032]
 gi|157681924|gb|ABV63068.1| recombination protein J [Bacillus pumilus SAFR-032]
          Length = 774

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 181/593 (30%), Positives = 284/593 (47%), Gaps = 29/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
           +S  RW          +  ++++   I  + A +LV R +   + A+ FL         D
Sbjct: 3   LSKMRWEY--EHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L    +A  RI +AI   E I+IFGDYD DG  S ++++  L   S   + YIPDR 
Sbjct: 60  PFLLKGMKEAVERINKAIEEQESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN         +GA L+ITVD G  + +  + A   G+D+I+ DHH+   E   A
Sbjct: 120 KEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEIGLDLIITDHHEPSEELPEA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+V+P +         L   GV F V   +   L              LLDL A+ T+ 
Sbjct: 180 LAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLP-----------TQLLDLAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           D+VPL   NR    KGLM  R+    GLKAL++    +      E +G+ I P +NA GR
Sbjct: 229 DLVPLHDENRWLAKKGLMQLRQSNRLGLKALLKEAGATLEEANEETVGFQIAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+++D  E E LA  +  LN+ R+ + S + E+A   V    DD    S 
Sbjct: 289 IEQADPAVHLLMTEDKDEAEELARFVQELNKERQKIVSTITEEAIQMVEETGDDQ---SA 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L + F RP+  +  +E+ +   GS RSI GFD+   +S   
Sbjct: 346 IVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFHLSKC- 404

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L +   ++A+  +      P+ ++D V     + 
Sbjct: 405 -RDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELT 463

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  I+ +    P+G  NP P     + +L+ IR +     H++M+ + +D + L  + F 
Sbjct: 464 VEAIEEMGMLSPFGMQNPKPFIMIEDARLEEIRTIGANQNHIKMSLKDED-KLLDCVGFH 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                         G R+ V G + +N W   K+ QL + DA   E   F  +
Sbjct: 523 QGQLK----EEVVTGSRISVIGEMSINEWNNRKKPQLMLKDARVDEWQLFDLR 571


>gi|110640034|ref|YP_680244.1| single-strand DNA specific exonuclease [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282715|gb|ABG60901.1| exonuclease RecJ [Cytophaga hutchinsonii ATCC 33406]
          Length = 574

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/577 (27%), Positives = 284/577 (49%), Gaps = 17/577 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW++        +A ++ +   I   ++ +LV RN+ + + AK+F  PS+  L  DP +
Sbjct: 6   KRWITKTLPAQ-EKARSLAEALNINAYISAMLVQRNIETFEEAKNFFRPSLSQLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA  R++QAI  +E+I+I+GDYDVDG  SV++   FL +   N   YIPDR  +G
Sbjct: 64  MRDMEKAVTRLMQAIAGNERILIYGDYDVDGTTSVSVFYGFLKNYYTNIEYYIPDRYKEG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + +E   +  A LI+++DCG  + + + YA + GID I+ DHH   +E   A A+
Sbjct: 124 YGVSKAGIEYARDTNATLIVSLDCGIRAVEMVAYANSFGIDFIICDHHNPGNELPDAVAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P + +       L   GV F +L  +            +  L   +DL+A++   D+V
Sbjct: 184 LDPKQNNCSYPYKELSGCGVGFKLLQALCTRAG-----YSSELLFEQIDLLAISICSDIV 238

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL        PG++A+++   +   I    + + IGP INA GRI  +
Sbjct: 239 PITGENRILTYFGLQKLNESPRPGIQAIVDVSGLKKAIDVNTVVFTIGPRINAAGRIDHA 298

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++++  +    A  ++  N  RR  +  +  +A   + +  +    +S  V+ 
Sbjct: 299 FAAVELLLAENKTDAANFAANINDHNLVRREFDETITGEALGMIQSNANAATASST-VLY 357

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+R  E + RP+  ++ + +GK  GS RS+  +D+ + +       +L
Sbjct: 358 KNDWHKGVIGIVASRCIEHYHRPTIILT-QSNGKVAGSARSVPDYDLYEAIDKC--SDLL 414

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGH  AAGLT+E  N       F++     +      P+  ID  L  + ++    +
Sbjct: 415 IQFGGHKYAAGLTMEEKNIEAFRTKFEEVVSATIRKEQLIPMISIDLELPLNQIDSRFFN 474

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           ++   GP+G  N  P+F   N       R++   HL++    QDS T  AI ++++    
Sbjct: 475 IVRQMGPFGPQNMQPIFVSRNVMDDGTSRILKDKHLKLNIRQQDSVTYPAIGWQMHAF-- 532

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +      +   +   L  N + G K  QL + D  
Sbjct: 533 --YDRIKNKEPFDICYSLEENEFNGKKTIQLMIRDIQ 567


>gi|302383023|ref|YP_003818846.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193651|gb|ADL01223.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 605

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/589 (37%), Positives = 321/589 (54%), Gaps = 7/589 (1%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           FL V  S+SG  W     +  + RA    Q   + + +AR L  R V  +   DFL P++
Sbjct: 14  FLDVARSLSGRAWRQRPAEASVIRAH--MQGLGLDEPLARALAARGVKPEQGADFLEPTL 71

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           + L PDP    D D AA  IV AI + E I +F DYDVDGA+S AL++R+      +  +
Sbjct: 72  KALFPDPSSFMDMDLAAEAIVSAIQSGESIHVFADYDVDGASSAALLVRWFRALGRDLPI 131

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           Y+PDR+ +GYGP+P   ++    GA+L+ITVDCG+ + +A+ +A   G+ V+VIDHH ++
Sbjct: 132 YVPDRLTEGYGPSPMAFDRLKASGAELVITVDCGAAANEAIAHACGIGLKVVVIDHHMMR 191

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243
            E     A+VNPNR  D SGQG+L AAGVVF++L  + R  R+          D+   LD
Sbjct: 192 EEPPRCLAVVNPNRPGDTSGQGNLAAAGVVFVLLAALNREARKRGLFVETPEPDIRQWLD 251

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIG 302
           L AL  +CDV  L G NRA    GL V     NPGLKAL+             + G+++G
Sbjct: 252 LAALGAICDVTGLTGFNRALTGLGLRVMSGWRNPGLKALLAVAGAEPGPAKSNHAGFILG 311

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG ++LG+RLL +DD  E   LA +LD LN  RR +E  + E A  +V    
Sbjct: 312 PRINAGGRIGRADLGARLLSTDDPLEARALAEELDALNVARREVEREVTETATRRVEATG 371

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDI 421
                ++V+VV G+ WHPG+VG++A RL+E++ +P   I  +     G GSGRS  G ++
Sbjct: 372 QHADGSAVVVVSGEDWHPGVVGIVAGRLRERWRKPVIVIGVDAVAHVGKGSGRSQPGMNL 431

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G+ +  A  EG+L+ GGGHAMAAGLT+       L DF                  ++D 
Sbjct: 432 GRAIQSAWREGLLLAGGGHAMAAGLTIRPDGIDALRDFLNATMAGEQADADALDWVEVDA 491

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
           +++  A + AL +  E   P+G  NP P+FA    + +    +N  H++      D  ++
Sbjct: 492 LIDPGAASRALFEGFERLAPFGPANPEPLFALSGVQSREPVQMNGGHVRCRLVGADGASV 551

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +AIA+R    P G  L+  +G  + V G L  + W G K  Q  + D +
Sbjct: 552 KAIAWRCADLPSGRALLAGQGG-LSVVGRLKADDWNGRKGVQFEIEDVA 599


>gi|159044818|ref|YP_001533612.1| single-stranded-DNA-specific exonuclease [Dinoroseobacter shibae
           DFL 12]
 gi|157912578|gb|ABV94011.1| single-stranded-DNA-specific exonuclease [Dinoroseobacter shibae
           DFL 12]
          Length = 585

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 247/595 (41%), Positives = 344/595 (57%), Gaps = 11/595 (1%)

Query: 1   MNDQ-AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD 59
           M D  AFLGVE S++G RW+ L   +    A  + Q   +PD V R L  R V+ + A+D
Sbjct: 1   MTDGPAFLGVESSLTGRRWIGLSPDQD-RAAERLVQITGLPDAVCRTLARRGVAPEEAED 59

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FL P++R L+PDP  L D ++AA R+  AI  +E+I IF DYDVDG +S AL++ +L   
Sbjct: 60  FLAPTLRALLPDPRSLRDMERAAARVNAAIARNERIAIFADYDVDGGSSAALLIDWLRAQ 119

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
              A +Y+PDRI +GYGPN   ME   +    LII VDCG+ S+D +  A   G DV+++
Sbjct: 120 GRTATLYVPDRIDEGYGPNIPAMEALAD-AHDLIICVDCGTLSHDPVAAAQ--GTDVVIL 176

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
           DHH  +     A+A+VNPNR D+     HLCAA VVFL+LV   R  R   +     DL+
Sbjct: 177 DHHLAEECLPAAHAVVNPNRQDEDGSLSHLCAAAVVFLLLVEANRQQRAAGQ--PGQDLM 234

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           +LLDLVALATV DV PL G+NRA+V +GL V  R+  PGL AL +   +    ++ +LG+
Sbjct: 235 ALLDLVALATVADVAPLSGVNRAFVRQGLTVMGRRERPGLTALSDSAGLDRAPSSYHLGF 294

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG ++LG+RLL + D  E   LA +L+ LN  RR +E+ +   A  +  
Sbjct: 295 VLGPRINAGGRIGAADLGARLLATRDPHEAAALAERLEKLNAERRDIEAQVRASALEQAE 354

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
           T+      A +    G+ WHPG+VG++A+RLKE   RP+  I   E  +G GSGRS+ G 
Sbjct: 355 TRGL---NAPLAWAAGEGWHPGVVGIVASRLKETANRPAIVIGL-EGDEGKGSGRSVPGI 410

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  +     EG+L+KGGGH MAAGLTV R           +         +      +
Sbjct: 411 DLGAAIQRLAHEGLLLKGGGHKMAAGLTVRRDLLEPAMARLSELLAAQGADRLGPKGLHV 470

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DGVL+  A+   LI  +E AGP+GA  P P FA P+  ++  + V  +HL+ +F      
Sbjct: 471 DGVLSPRAITTELITRIEDAGPFGASAPAPRFALPSVTIRYAKPVGESHLRFSFAGPCGT 530

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            +  IAF  + TP+G  L QS     H+ G L +N W G  + QLR+ DA+  E 
Sbjct: 531 RMDGIAFGAFDTPIGPALSQSARGTFHLAGRLEINSWGGQHKAQLRLDDAAAAEA 585


>gi|67459155|ref|YP_246779.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia felis
           URRWXCal2]
 gi|67004688|gb|AAY61614.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia felis
           URRWXCal2]
          Length = 587

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/587 (37%), Positives = 329/587 (56%), Gaps = 14/587 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+G  W   L  E I     + +   I D++AR++  R  +++  ++FL P I+ L+
Sbjct: 4   QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D  KA  R V+AI N++KI IF DYDVDGA S AL+       ++  ++Y+PD
Sbjct: 62  PDPFHLLDMKKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNVFRDLNILCDIYVPD 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           RI +GYGP P  M+K  + G +L+ITVDCG+ +++AL+YA +  +DVIVIDHH       
Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDLNLDVIVIDHHIATEILP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246
            A A+VNPNR+D+ S   HL A GV FL    I   L++ N         +L+  LDLVA
Sbjct: 182 DAVAIVNPNRIDEKSECKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMKYLDLVA 241

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCD++ L GLNRA+V  GL V +++ N G+K L +   ++      +LG+++GP IN
Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAELNEIPKCYHLGFILGPRIN 301

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+G+S+LG+ LL +  S E   LA +L+  N  R+++E  M+E+A    LTQ    Q
Sbjct: 302 AGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKVIELLMIEEATEIALTQ----Q 357

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            +S++ +  + WHPG++G++A RLKEKF +P   ++  + G G  S RSI G D G  + 
Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALND-GIGKASCRSILGIDFGAEII 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A  + +L+ GGGHAMAAG TV       L +FF       +  L      + D  L  +
Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVN 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542
            VN  L+  L +  P+G GN  P+F F +  +    +V   H++           ++ L 
Sbjct: 477 GVNFPLMKELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLAPNKRGFGNKALS 536

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AIAF   GT   E L+  + K +   G L  N W+ +   QL + D 
Sbjct: 537 AIAFNSVGTSFEEVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIRDI 583


>gi|239827849|ref|YP_002950473.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           WCH70]
 gi|239808142|gb|ACS25207.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           WCH70]
          Length = 785

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 299/589 (50%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E I     + ++  +  ++A++LV+R V +++ A  FL P ++    DP +L
Sbjct: 7   RWDVKRPDENI--VTHLVEQSHMDPLIAKLLVHRGVRTVEEANAFLYP-LKQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A  RI +AI + E I+++GDYD DG +S  +M+  L       + YIP+R  +GY
Sbjct: 64  DGMERAIERIQRAIQHGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +       +G  LIITVD G  +   +  A   G+DVI+ DHH+V      AY ++
Sbjct: 124 GPNENAFRWAKEQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPALPEAYEII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +           L       LD+VA+ T+ D+V 
Sbjct: 184 HPKKPGSTYPFRELAGVGVAFKVAHAL-----------LGDVPRHFLDVVAIGTIADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R     GL+AL ++  I    I  + +G++I P +NA GR+GE+
Sbjct: 233 LTGENRLLVAQGLEQLRNTKRIGLRALCKQCGIEAKEINEQTVGFVIAPRMNAVGRLGEA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLL+++  +E + LA ++D LN+ R+ + + + E+A   V  Q    +   V+V+ 
Sbjct: 293 TPAVRLLMTEKEEEAQRLAKEMDDLNRERQQLVAKIAEEAAQIVNEQFPPSENK-VLVIA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A+RL E+F RP+  +S + E G   GS RSI GFD+    S +    I
Sbjct: 352 KEGWNPGVIGIVASRLVEQFYRPTIVLSIDSEKGIAKGSARSIHGFDM--FSSLSTCRDI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A +++ A   TP+  ID V + S + +++ 
Sbjct: 410 LPHFGGHPMAAGMTLSVDHIDELRQRLNALADDMLTADDFTPITPIDAVCSVSDLTLSVA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + LE   P+G  N  P+F   N  +++IR +    +HL+  F +Q+   + ++ F     
Sbjct: 470 EQLEKFAPFGVDNAKPLFLMENVSVETIRRIGADQSHLKAVF-AQNGAAIDSVGFGFGYL 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   ++ V G L VN W   ++ QL + D +  E   +  +
Sbjct: 529 ----CDEIAPDAKVSVVGELMVNEWNNLRKPQLMICDVAVHECQLYDIR 573


>gi|58039949|ref|YP_191913.1| single-stranded-DNA-specific exonuclease RecJ [Gluconobacter
           oxydans 621H]
 gi|58002363|gb|AAW61257.1| Single-stranded-DNA-specific exonuclease RecJ [Gluconobacter
           oxydans 621H]
          Length = 599

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/600 (37%), Positives = 326/600 (54%), Gaps = 14/600 (2%)

Query: 2   NDQAFLGVECSISGFRWVSLLG---QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK 58
           +  A LGV  S    RW+       +     ALA+ Q+  IP+++AR+L  R V+   A 
Sbjct: 5   DTGAVLGVTRSAGHRRWIWRDPRLAEADNRLALALAQQAGIPELLARILSARGVAPPDAS 64

Query: 59  DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118
            FLNP +R  MPDP  L D D+AA R+ QA+ N E + +FGDYDVDGA   AL+   L  
Sbjct: 65  SFLNPRLRDAMPDPSCLQDMDRAAERLAQAVRNREHVGLFGDYDVDGACGTALVCDTLRE 124

Query: 119 CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178
                + +IPDR+ +GYGPN + +E  +++GA L++ +DCG+ + D L   T++  D+IV
Sbjct: 125 LGCTVSTHIPDRLTEGYGPNTAALENLLSQGATLLVCIDCGTAAIDILNGLTDR-ADIIV 183

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--- 235
           +DHH+     +P   +VNPNRLD  SG G +CA  V FL +V   R LR+ N    +   
Sbjct: 184 LDHHKPDGAALPKGIVVNPNRLDCTSGLGSICATAVAFLTMVATIRHLRRCNWFDEDQVI 243

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
            DLL  LDL ALAT+CDV+PL GLNRA V++GL V  R    GL  L     +    +A 
Sbjct: 244 PDLLKRLDLTALATICDVMPLTGLNRALVMQGLRVMSRGERLGLATLSSVAGVKEEASAM 303

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
             G+ +GP INAGGRI +++LG +LL+SDD  E   LA +LD +N+ R+ +ES +L+ A 
Sbjct: 304 ACGFALGPRINAGGRIAQADLGLKLLLSDDVVEARALAEQLDRVNRQRQTVESTILDSAM 363

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
            +   Q       +VI + G+ WHPG+VG++A RLKE++ RP+   +  + G   GS RS
Sbjct: 364 EQAQQQL--DAGHAVIFLHGETWHPGVVGIVAGRLKERYNRPALVAALTD-GVIKGSARS 420

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           + G D+G  +  A + G+L+ GGGHAMAAG ++          +        +  L    
Sbjct: 421 VPGLDLGTAIIAARQNGLLLSGGGHAMAAGFSLSADRADEFHSWLDSQLSGALT-LPKQD 479

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTF 533
             K+DG++  +  ++A+ D L    P+G GN  PV A  N +      +      L++  
Sbjct: 480 ALKLDGIMTLAGASVAVADQLARLEPFGPGNEEPVLAISNVRCVKSERIGKDGNTLRVIL 539

Query: 534 ESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +D  T L+ + FR    P    L       +HV G L    W+  K     + DA+P 
Sbjct: 540 QGEDGGTRLRGLVFRAADKPFAALLEDRSMPLVHVAGTLRAETWQERKNLSFFISDAAPA 599


>gi|146298353|ref|YP_001192944.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacterium
           johnsoniae UW101]
 gi|146152771|gb|ABQ03625.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacterium
           johnsoniae UW101]
          Length = 568

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 177/580 (30%), Positives = 288/580 (49%), Gaps = 24/580 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW     +   ++   + Q   + D VA +L+ R + + + AK+F  PS+  L  DP ++
Sbjct: 2   RWTLKP-KPSEDKIKHLAQALNVEDFVATLLIQRGIETFEDAKNFFRPSLEHLH-DPYLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI +AI N E IM+FGDYDVDG  +V+L+  +L     +   YIPDR  +GY
Sbjct: 60  KDMDKAVARIERAIENQENIMVFGDYDVDGTTAVSLVSSYLKSHYPHIATYIPDRYDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   + G  LII +DCG  S D + YA  + ID IV DHH+       A A++
Sbjct: 120 GISYKGIDYADDNGISLIIALDCGIKSIDHIAYAKAKNIDFIVCDHHRPGEILPDAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  + +     N+     DL+  LDLVA A   D+VP
Sbjct: 180 DPKREDCSYPYDELCGCGVGFKLIQALGQ-----NRNETIEDLVPYLDLVATAIAADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V   +  PG+KAL+ +      +   ++ ++I P INA GRI   N
Sbjct: 235 ITGENRVLAYFGLKVINSEPRPGIKALVHQAK-KKVLDITDVVFIISPRINAAGRIKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   D ++ +  A +++  N +R+ ++  + ++A  ++L    + ++    VV  
Sbjct: 294 HAVELLTEFDLEQAQQFASEIEQYNADRKDLDKKITKEAFQQILQN--NEEERFSTVVFQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   L 
Sbjct: 352 EDWHKGVIGIVASRLIETYYRPTLVFTKSGD-KYAASARSVKGFDVYNALDACSEH--LE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAG+T++  N+    D F+K     +   + TP  +ID  ++ S +   LI +
Sbjct: 409 QFGGHMYAAGMTLKAENYQLFKDAFEKCVQETIQPEMRTPEIEIDAEIDFSDITPKLIRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551
           L+   P+G  N  PVF   + K     + +     HL++  +       + AI F     
Sbjct: 469 LKQFEPFGPQNMTPVFMTKDIKDTGYAKTLGAEEEHLRLFVKQSLGTDGIAAIGFG---- 524

Query: 552 PLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            LG+ L  ++ +    +   +  N W G+   QL + D  
Sbjct: 525 -LGKKLNIAQNQNPFQLAYTIAENEWNGNISTQLMLKDIR 563


>gi|327439551|dbj|BAK15916.1| single-stranded DNA-specific exonuclease [Solibacillus silvestris
           StLB046]
          Length = 773

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 180/592 (30%), Positives = 286/592 (48%), Gaps = 27/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72
           S   W     ++        +++  I  I A++L+ R  + I+ AK  L         DP
Sbjct: 4   SQKVWTI--TKQDEQLVKQFSEQLNISTIAAKILIARGCTLIEEAKPLLKID-ETQYHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++   + A  RI QA+ N EKI+++GDYD DG  S  +++  L     + +  IPDR +
Sbjct: 61  YLMAGMEDAVMRIEQALDNGEKILVYGDYDADGITSTTVLLNALLDLGADVSFVIPDRFI 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  L +K   +G  LIITVD G +  + ++ A   G+DVI+ DHH+  +    A 
Sbjct: 121 HGYGPNEELFKKAYEDGVNLIITVDNGISGIEQVKMARELGMDVIITDHHEAGNILPDAN 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
            +++P   +     G L   GV F +   +Y  L              L + VA+ T+ D
Sbjct: 181 VIIHPRVPEGHYPFGELAGVGVAFKLAHALYGELPD-----------HLFEYVAVGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VPL+G NR  V +GL   ++  NP +KA+ +        I  E +G+  GP +NA GR+
Sbjct: 230 LVPLVGENRYLVQRGLQALKQSPNPWVKAICDASGANKKDINEETVGFYFGPRLNAIGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G +  G   L+S+D  +   LA +L+  N  R+ +   +  +A A +  +   ++ + V+
Sbjct: 290 GSAEPGVHFLMSEDPLQANTLATQLNDKNTERKKIVEDITNEAMAMI-EEDASLKDSLVL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+PG+VG++A+RL EK+ RP+  +S   E G   GS RSIEGF +      A  
Sbjct: 349 VVAGEGWNPGVVGIVASRLVEKYYRPTIILSLNLEKGIAKGSARSIEGFHL--FNELAKN 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAG+T+   +   L     + A   +         +ID  +  S + +
Sbjct: 407 RDILPHFGGHPMAAGMTLPIEHVASLRTRLNEQAKLCLTEEQLVQNMQIDVPIELSEITV 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             I+ L    P+G   P PVF   + K++S+R +     HL+M  E     TL AI F  
Sbjct: 467 EAIEELRQLAPFGTEFPKPVFGIQDVKVKSMRKIGSGENHLKMELEDPY-RTLDAIGFNK 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S G  + + G L +N W+G+K+ Q  + D S  E   +  +
Sbjct: 526 GFLH----DEISYGVALSLVGDLQINEWQGNKKPQFMIQDVSVNEWQLYDYR 573


>gi|124009844|ref|ZP_01694512.1| single-stranded-DNA-specific exonuclease RecJ [Microscilla marina
           ATCC 23134]
 gi|123984165|gb|EAY24526.1| single-stranded-DNA-specific exonuclease RecJ [Microscilla marina
           ATCC 23134]
          Length = 569

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/579 (28%), Positives = 286/579 (49%), Gaps = 19/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW+             +     I + +A +LV R++ + D AKDF  PS++  + DP +
Sbjct: 3   KRWIFKET-PDPQLVNQLASSLEISESMATLLVQRDIKTFDAAKDFFRPSLKNHLHDPFL 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA  R+ +AI + EK+MI+GDYDVDG  SVAL+  FL +     + YIPDR ++G
Sbjct: 62  MQDMEKAVIRLEKAIEHKEKMMIYGDYDVDGTTSVALVYGFLQNYHSLLDYYIPDRYLEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++    +G  L+I +DCG  S + + YA  QG+D I+ DHH    E   A+A+
Sbjct: 122 YGISKISIDWAKEQGITLVIALDCGIKSVELMDYANEQGVDYIICDHHMPGQEIPRAHAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L   GV F ++         D        L   LDL+ ++  CD+V
Sbjct: 182 LDPKRKDCAYPFKELSGCGVGFKLMQAYCLRNNID-----LEKLYPFLDLLVISIACDIV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIG 312
           P+IG NR     GL    +    G+KALI+       + +   N+ + +GP INA GRI 
Sbjct: 237 PIIGENRVMAFYGLRQLNQTQRTGIKALIDVAKFSDDTVLDISNVVFGLGPRINAAGRIQ 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +     LL+S++ +E + +A  ++  N  RR ++S++ E+A + +  + + ++++   V
Sbjct: 297 HAKKAVMLLVSNNKKEADYVAELINKDNLQRRDLDSSITEEALSMI--EQNRLEKSKTTV 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WH G++G++A+R  E + RP+  ++    GK  GS RS+ GFD+ + +       
Sbjct: 355 LFKENWHKGVIGIVASRCIETYHRPTVILTQHN-GKATGSARSVPGFDLYEAIDAC--AD 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH  AAGLT+           F+      +     TP+ +ID  +    +    
Sbjct: 412 LLEQFGGHTHAAGLTLTLDKIEPFRQKFENIVAKQIDEEQLTPLIEIDAKIELKDITGKF 471

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGT 551
             +L+   P+G  N  PVF   +      +++   H++     + S+    AI F +   
Sbjct: 472 YRILQQFAPFGPANMRPVFVSEHLYADYPKLLKEKHVKFRTRQEGSDAFFDAIGFGMPE- 530

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +   + G+R  +  ++  N +RG    QL++ D  
Sbjct: 531 ---HYERIASGERFALCYNIDENRYRGQTSLQLKIKDIK 566


>gi|298291363|ref|YP_003693302.1| single-stranded-DNA-specific exonuclease RecJ [Starkeya novella DSM
           506]
 gi|296927874|gb|ADH88683.1| single-stranded-DNA-specific exonuclease RecJ [Starkeya novella DSM
           506]
          Length = 606

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 271/591 (45%), Positives = 367/591 (62%), Gaps = 4/591 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            +AFLGV  S +G  W   L   G    LAI Q+  +P+I+ARVL  R V ID  + +L+
Sbjct: 12  PRAFLGVARSATGRFWRERLDLRGAQATLAIVQRTGVPEILARVLAGRGVGIDEVEAWLD 71

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P+++ L+PDP  LTD      R+  A+   EK+ +FGDYDVDGA S AL++  L    ++
Sbjct: 72  PTVKRLLPDPDTLTDMGPCVARLADAVTTGEKVAVFGDYDVDGATSTALLVEVLRAGGLD 131

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
              YIPDRI +GYGPN   +E     GA L++ VDCG+ S++    A   G+DV+VIDHH
Sbjct: 132 PAFYIPDRIFEGYGPNIPAIEGLAAGGASLLVPVDCGTMSFEPFARARELGLDVVVIDHH 191

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239
           Q         ALVNPNR+DDLSG GHLCA G+VF+V V + R L Q           +LL
Sbjct: 192 QAGETLPEVAALVNPNRVDDLSGLGHLCAVGLVFVVAVGLLRELEQRGWWNAARPKPNLL 251

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           + LDLVAL TV DVVPL+GLNRAYV KGL+  R++  PGL AL++   +S P  A +LG+
Sbjct: 252 ADLDLVALGTVADVVPLLGLNRAYVTKGLLQLRKRERPGLTALMDAARLSGPPKAWHLGF 311

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG++ LG+RLL++ D  E   +A +LD LN  R+ +E A++ QAEA+  
Sbjct: 312 LLGPRINAGGRIGDAALGTRLLLTRDPIEAAAIAAELDRLNAERQQVERAIVAQAEAEAE 371

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
                  + +VI+  G  WHPG+VGL+AARLKEKFGRP+FAI+F  +    GS RSI G 
Sbjct: 372 AALGRAGEGAVILSSGQGWHPGVVGLVAARLKEKFGRPAFAIAFTGESG-AGSARSIPGV 430

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G+ V  AVE GILVKGGGHAMAAGLTV R   G L    ++     V          I
Sbjct: 431 DVGRAVRAAVELGILVKGGGHAMAAGLTVAREKLGELRAHLEEVLAVSVEEARAVDETVI 490

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG L+A+     L++++E AGP+GAGNP P+FAFP H++      N   +++     D  
Sbjct: 491 DGALSAAGATPDLVELIEKAGPFGAGNPQPIFAFPAHRIVYAEPGNSDQVRVRLRGSDGT 550

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            L  +AFR   TPLG+ L+ +RG++ HV G L ++ W+G  +  LR+ D +
Sbjct: 551 VLSGVAFRAANTPLGQALIAARGQQAHVAGMLELDSWQGRTQVNLRICDVA 601


>gi|260061414|ref|YP_003194494.1| putative single-stranded-DNA-specific exonuclease [Robiginitalea
           biformata HTCC2501]
 gi|88785546|gb|EAR16715.1| putative single-stranded-DNA-specific exonuclease [Robiginitalea
           biformata HTCC2501]
          Length = 571

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/578 (30%), Positives = 284/578 (49%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RWV    + G   A  +  +  I  ++A +LV R +   + A+ F  P +  L  DP+ +
Sbjct: 6   RWVFKP-EPGREAASRLAGELGIDPLLAGLLVQRGIRDFESARRFFRPELSHLH-DPMQM 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D ++A  R+  A+   E+I+++GDYDVDG  SVALM  +L   S     YIPDR  +GY
Sbjct: 64  QDMEQAVDRLEVALTRGERILVYGDYDVDGTTSVALMAAYLREYSDAVATYIPDRYREGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   +E   + G  LI+ +DCG  + +  +YA ++GID+I+ DHH+       A A++
Sbjct: 124 GLSRQGIEFADDNGMGLIVALDCGVKAIEQARYARSKGIDLIICDHHRPGETLPEAVAVL 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  ++     D       +LL  LDLVA A   D+VP
Sbjct: 184 DPKRDDCPYPYKELCGCGVGFKLIQALHERRGLD-----PAELLPYLDLVATAIGADIVP 238

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR  V  GL V      PG++AL+  ++  +     +L + + P INA GR+    
Sbjct: 239 ITGENRVMVHYGLQVINGGARPGIRALLRGLDRKNY-QVSDLVFRVAPRINAAGRMQHGE 297

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              RLL   D      LA +++ LN  RR  E A+ ++A   V ++  + + ++V  V  
Sbjct: 298 DAVRLLTETDPARAGALADEIESLNSQRRETEQAITDEALEMVRSEGGEARMSTV--VFK 355

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS+ GFD+ + +        + 
Sbjct: 356 EDWHKGVIGIVASRLIETYYRPTLVFTRSGD-KLAASARSVRGFDLYEALEAC--SDCIE 412

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+E   F    D F+K     +     TP  +ID  ++ S ++  L+ +
Sbjct: 413 QFGGHTYAAGLTLEASRFQDFKDRFEKVVSERITEDSLTPEIQIDLKIHLSQIHPKLVRI 472

Query: 496 LESAGPYGAGNPNPVF-AFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTP 552
           L   GP+G GNP PVF A P       R V     HL++      S  +  I F +    
Sbjct: 473 LSQFGPFGPGNPAPVFVAGPLVDTGYARTVGEGGAHLKLAVTQDGSGPIGGIGFGLGDR- 531

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +   G+  +    +  N+W+G    QL++ D  
Sbjct: 532 ---LDLIQGGREFYAVFSIEENHWQGRTSTQLKIRDIR 566


>gi|77919486|ref|YP_357301.1| single-stranded-DNA-specific exonuclease RecJ [Pelobacter
           carbinolicus DSM 2380]
 gi|77545569|gb|ABA89131.1| exonuclease RecJ [Pelobacter carbinolicus DSM 2380]
          Length = 574

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 194/578 (33%), Positives = 286/578 (49%), Gaps = 18/578 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W+     E ++   A+ Q   +  + +  L+ R + S+D  + FL   +   MPDP ++ 
Sbjct: 9   WLERDVSEQLDAV-ALQQCLGLSRLASEALLRRGLGSLDEVQAFLQAKLSS-MPDPCLMA 66

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  R+ QA+ N EKI + GDYDVDG +  AL++  L       + +IP R+ DGYG
Sbjct: 67  DMDKAVERLAQAVCNREKIAVHGDYDVDGISGTALLVETLRAFGARVSYHIPLRLKDGYG 126

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            + + +E     GA L +TVDCG +++     A   G+D+I+ DHHQV      A A+VN
Sbjct: 127 VSAAALEDCATHGATLAVTVDCGVSAHAQAMRAAELGLDLIITDHHQVPETLPAALAIVN 186

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVV 254
           P+R D      +L   GV FL+LV + + LR           DL   LDLVAL T+ D+V
Sbjct: 187 PSRPDCGYPFKNLAGVGVAFLLLVALRKHLRDLGHWKTVCEPDLRYGLDLVALGTIADIV 246

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL GLNRA    GL +    G  GL+AL +   +        +G+ + P INA GR+ + 
Sbjct: 247 PLKGLNRALTKAGLELLSHSGRAGLQALKKVAGVDKVTCGS-IGFRLAPRINAAGRLEDG 305

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            +G  LL+ +  Q+    A  LD +N +R+ +E   LEQA+ +   +         IV+ 
Sbjct: 306 AVGVELLLQESVQDAMATAEMLDRVNSDRQAIEQQTLEQADERWRQRSSGA--THSIVLA 363

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            +RWHPG++G++A+RL EK+ RP+  I+  E G G GSGRSI+G  + + +S       L
Sbjct: 364 DERWHPGVIGIVASRLVEKYHRPTILIALNE-GVGKGSGRSIKGLHLYQALSDCQAF--L 420

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGH  AAGLT++          F+K A   +           DG ++   +++  ID
Sbjct: 421 QGFGGHEYAAGLTIDAGRVEAFARDFEKLARQTLSPEDLRFRQFHDGEVSLEEIDLDSID 480

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            L    P+G GNP PV+      LQS++ V   HL+     Q    L  IAF +      
Sbjct: 481 ELSRLAPFGPGNPQPVYLARGVHLQSVQRVGDKHLRF-IACQGGHGLPCIAFGMAERQAQ 539

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               Q       +      N WR     QL+V D  PV
Sbjct: 540 LAGPQ------DILFTPQRNEWRERVSVQLQVRDIRPV 571


>gi|284036115|ref|YP_003386045.1| single-stranded-DNA-specific exonuclease RecJ [Spirosoma linguale
           DSM 74]
 gi|283815408|gb|ADB37246.1| single-stranded-DNA-specific exonuclease RecJ [Spirosoma linguale
           DSM 74]
          Length = 584

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 176/589 (29%), Positives = 276/589 (46%), Gaps = 27/589 (4%)

Query: 16  FRWVSLLGQEGINR---ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
            RW++    +   +      +T    +   +A +LV R V + + A+ F  P I  L  +
Sbjct: 10  KRWITKPLPDSAEQRSAIETLTSSLGVSPFLAALLVQRGVQTYEEARTFFRPEINHLH-N 68

Query: 72  PLILTDCDKAARRIVQAI--YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           P  + D DKA  R+  A+     EKI+I+GDYDVDG  SVAL+  FL       + YIPD
Sbjct: 69  PFEMKDMDKAIMRLQMAMLPERQEKILIYGDYDVDGTTSVALVYGFLKSYHPAIDYYIPD 128

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R  +GYG +   ++     G  LII +DCG  S D +  A   G+D I+ DHH+   +  
Sbjct: 129 RYKEGYGISKQGIQWAAENGFSLIIALDCGIKSIDRVAEAKALGVDFIICDHHRPGDQIP 188

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
            A A+++P R D       L   GV F +L         D       +L   LDLVA++ 
Sbjct: 189 DAAAVLDPKRDDCAYPYKELSGCGVGFKLLQAFCLHKGID-----LNELYPSLDLVAVSI 243

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309
             D+VPL G NR     GL         GLKALI+    S  +   NL + +GP INA G
Sbjct: 244 ASDIVPLTGENRVLAHYGLKHLNASPRTGLKALIKIAGFSRELDITNLVFGLGPRINAAG 303

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           RI  +    +LL+++  +E +  AM ++  N +RR  +S+M EQA   +      +Q  S
Sbjct: 304 RIQHAKAAVQLLLAESEEEADEFAMAINKHNNSRREFDSSMTEQALEMIRGNESLLQAKS 363

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
             V+    WH G++G++A+R  E F RP+  ++ + + K  GS RS+ GFD+ + +    
Sbjct: 364 T-VLFDASWHKGVIGIVASRCIEHFHRPTIILT-QSNDKAAGSARSVPGFDVYEAIEEC- 420

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +L + GGH  AAG+T+   N       F++   + +     TP+  ID  L+ S ++
Sbjct: 421 -ADLLEQFGGHTFAAGMTMSVDNIDAFRKKFEEVVASRIKEEHLTPLIDIDLPLDFSEIS 479

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLAHLQMTFESQD------SETLQ 542
             L  ++   GP+G  N  P F   +   +    ++   HL++     D       +T  
Sbjct: 480 DKLYRIVRQMGPFGPHNLQPTFMTEDVYLVSEPIIMKEKHLKINVRQGDTTARRSGQTFT 539

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           AI F +         + S GK   +   +  N++ G+   QL + D   
Sbjct: 540 AIGFGMAHI----ADLLSPGKPFSICYQVDQNHFNGNVSLQLMLKDIKV 584


>gi|189500724|ref|YP_001960194.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium
           phaeobacteroides BS1]
 gi|189496165|gb|ACE04713.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium
           phaeobacteroides BS1]
          Length = 568

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/578 (29%), Positives = 277/578 (47%), Gaps = 19/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +RW  L   E    A A++++  +   +AR L NR ++  + AK+F  PS+  L P P +
Sbjct: 4   YRWNILATDE--TAAAALSREINVSMPLARALSNRGIAGFEEAKEFFRPSLEQL-PSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D  KA  R+  A+   EKI+I+GDYDVDG A  AL+  FL     +   YI DR  +G
Sbjct: 61  FRDMQKAVARVRTAVAEKEKILIYGDYDVDGTAGTALLCLFLQSLGADVFYYINDRFSEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + S +     +   L+ITVDCG ++   ++    +GIDVIV DHH+      PA+A+
Sbjct: 121 YGLSESGVSHACEQKTSLVITVDCGISAGREIEQLRKEGIDVIVCDHHEPGEL-PPAFAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV   ++  +   L               LD+VA+AT  D+V
Sbjct: 180 LNPKVPGCGYPFRELCGCGVALKLVHALSESLG-----SAEEAWQQYLDIVAVATSADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
           PL   NR Y+ KG+ + ++    G++ ++  ++I    +   ++ + I P INA GR+  
Sbjct: 235 PLEKENRVYMHKGMDLLQKSPRAGIQEMLTLMDIEPKALGTGHIAFGIAPRINAAGRMQT 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +      LI+    E ++ A +LD LN+ RR ++S M + A+A V          S IV+
Sbjct: 295 ARTAVEWLIAGSRDEAKVHAEELDRLNRERREIDSGMFKSADAMVDGYFASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL +++  P+  +   + G   GS RS++G +I +++        
Sbjct: 353 YNEAWHLGVLGIVASRLLDQYYLPTVIMGGSD-GLVKGSVRSVQGLNIYEVLQQCERF-- 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAG+T++  N       F       +         +ID  L    V    +
Sbjct: 410 LENFGGHDAAAGITLKPENIAGFRRKFDTICSEKLTMEHRQKELQIDSSLLPGEVTGRFL 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           D+L   GP+G GN  P+F   N +L    R++   H++   +      L  IAF      
Sbjct: 470 DVLRQFGPFGQGNREPLFFSANMRLSGLPRLLKGKHVKFAVKDVSGRILDVIAFGRED-- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L +   +   +   L  N W G K  QL++ D +
Sbjct: 528 IYRELERGSRRMFSMVYALDENEWNGRKSMQLKLKDMA 565


>gi|322419800|ref|YP_004199023.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M18]
 gi|320126187|gb|ADW13747.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M18]
          Length = 572

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 180/581 (30%), Positives = 281/581 (48%), Gaps = 20/581 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPD 71
           I+   W +          LA   +  +P ++AR+L NR VS    A+ +LNP +  L  D
Sbjct: 4   ITHRCWQARSADADTVAGLA---RCGVPPLLARLLANRGVSGPADAEAYLNPVLSGLH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P++L     A  R+++A+   E++ + GDYDVDG  S AL++ F     ++   YIP R+
Sbjct: 60  PMLLKGMAPAVDRLLKALSQGERVCVHGDYDVDGVTSCALLIGFFRKIGLDCFHYIPKRL 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +   +      GA +++TVDCG T+    +     GID+IV DHH    E   A
Sbjct: 120 TEGYGLSEQGVTAAARGGAGVLVTVDCGITAVAEARLCQEAGIDLIVTDHHTPADELPDA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALAT 249
            A++NP +         L   GV F +++ +   LR D         DL   LDLVAL T
Sbjct: 180 LAIINPLQPSCPFPFKALAGVGVAFHLVIALRARLRADGHFARGGEPDLKEYLDLVALGT 239

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309
           + DVVPL+G+NR  V  GL        PG++AL +   IS  +    +G+ + P INA G
Sbjct: 240 IADVVPLLGVNRVLVSCGLKQLSAGCRPGVEALKQVAGISGEVGCGAVGFRLAPRINAAG 299

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++ +G  LL+  D      +A +LD  N  R+ +E A  E+A + +  +        
Sbjct: 300 RLEDAAVGLELLLCKDPVRARDIATELDEANAERQSLERATFEEARSML--EQGACSGRK 357

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            IV+  + WHPG++G++A+R+ E F RP    +  E G G GSGRSI  F +   +    
Sbjct: 358 SIVLGSELWHPGVIGIVASRIVELFHRPVILFA-FEGGTGRGSGRSISRFHLLDAIKGC- 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
               L++ GGH+ AAGL++ R    R    F++ A   + A    P    D  L    ++
Sbjct: 416 -ADHLLRFGGHSHAAGLSIARDELERFALRFEEAAQQTLDAEALVPTLAYDLELAPCDID 474

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
             L+  +E   P+G GNP P+F      ++  RV+   H+++    Q   +  AIAF + 
Sbjct: 475 QDLVQEIERMKPFGMGNPEPLFVLKGAVVEESRVLKGGHVKLRV-GQGGISFDAIAFGLA 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              + +        R+ +     +N W G    QL V D  
Sbjct: 534 EKGIPK-------GRVDLLFSPGINVWNGRSSLQLTVKDLR 567


>gi|163794637|ref|ZP_02188607.1| Single-stranded DNA-specific exonuclease [alpha proteobacterium
           BAL199]
 gi|159179910|gb|EDP64435.1| Single-stranded DNA-specific exonuclease [alpha proteobacterium
           BAL199]
          Length = 592

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 243/597 (40%), Positives = 342/597 (57%), Gaps = 9/597 (1%)

Query: 2   NDQAFLGVECSISGFRWVSL--LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD 59
                LGVE S++G RW++    G E     LAI Q+H +P+IV R++  R + +D  + 
Sbjct: 1   MTTPILGVERSVTGKRWIARGGAGVEIERLGLAIAQRHGVPEIVGRLIAQRGIELDGVER 60

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FL P+++  +PDP +L D D AA R+  A+   + I +F DYDVDGA S ALM R+L   
Sbjct: 61  FLEPTLKAELPDPSVLKDMDAAAGRLSDAVQGGQPIGLFADYDVDGATSAALMTRYLRAV 120

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
              + +++PDRI +GYGPN   +E    +GA +++ +DCG  + + L  A   GID++V+
Sbjct: 121 GATSLLHVPDRIDEGYGPNLPAIEGLAGQGAGVVVCLDCGILAVETLGEARAAGIDMMVV 180

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFD 237
           DHH    E   A A+VNPNRLD+  G G L A GV FLVLV + R LR+          D
Sbjct: 181 DHHLAGPELPSAVAVVNPNRLDEPGGYGQLAACGVTFLVLVALNRELRRRGWFKQRPEPD 240

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
           L  LLDLVAL TVCDVVPL GLNRA+V +G+ V   +GNPGL AL +   +       +L
Sbjct: 241 LRVLLDLVALGTVCDVVPLAGLNRAFVAQGIRVMAGRGNPGLAALGDIAKLDRRPDPYHL 300

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+++GP INAGGR+G ++LG+RLL +DD+ E   LA +LD  N  RR +E+         
Sbjct: 301 GFVLGPRINAGGRVGRADLGARLLATDDAAEAATLAAELDRYNGERRTIEAE----VLEA 356

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
            + Q +     + +VV G+ WHPG+VG++A+RLK++F RP+  I   EDG G GSGRS+ 
Sbjct: 357 AIAQAEAQADGAALVVVGEGWHPGVVGIVASRLKDRFHRPACVIG-VEDGIGKGSGRSVA 415

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
           G  +G  +  A + G+L+KGGGHAMAAG TV          F  +     +     T   
Sbjct: 416 GVQLGAAIIAAQQAGVLIKGGGHAMAAGFTVAADRVEAFKAFLCERVAAELADGDRTATL 475

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
            +D  L  S     L+  +   GP+G GN  P FAFP  ++    VV   H++ T    D
Sbjct: 476 SVDAALAPSGATGDLVRTVGRIGPFGTGNAEPRFAFPAVRVVGAGVVGENHVRCTLTGSD 535

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
              ++AIAFR     LG+ L+++     HV GHL  + +RG  + QL V DA+P  G
Sbjct: 536 GARVKAIAFRALDGDLGQSLLKAGSTPFHVVGHLRADDFRGGDQVQLIVDDAAPATG 592


>gi|163754680|ref|ZP_02161802.1| single-strand DNA specific exonuclease [Kordia algicida OT-1]
 gi|161325621|gb|EDP96948.1| single-strand DNA specific exonuclease [Kordia algicida OT-1]
          Length = 562

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/578 (29%), Positives = 277/578 (47%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +   + +   + +IVA +L+ R + + + AK+F  PSI  +  DP ++
Sbjct: 2   RWTLKPKPE-TAKIQHLQEVLQVDEIVATLLLQRGIETFEEAKNFFRPSIEQIH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI +AI N E IM++GDYDVDG  SVAL+  +L         YIPDR  +GY
Sbjct: 60  KDMDVAVARIDKAIENGENIMVYGDYDVDGTTSVALVSSYLKTIYPQIATYIPDRYEEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LIIT+DCG  + D + YAT +GID+++ DHH+  +E   A A++
Sbjct: 120 GLSFQGIDYASDNDISLIITLDCGIKAIDKVAYATEKGIDIVICDHHRPGNELPKAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +     +        DL   LDLVA A   D+VP
Sbjct: 180 DPKRDDCAYPYDELCGCGVGFKLIQALASKRGK-----TVTDLFPYLDLVATAIAADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L G NR     G+ V  +    G+KA+I ++      T  ++ +++ P INA GRI +  
Sbjct: 235 LTGENRTLAYFGMKVINKSPRAGIKAIISQLKKKE-FTITDVVFVVAPRINAAGRISQGL 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL  ++ +  +  A  ++  N  RR ++  + ++A  ++  +  + Q+    VV  
Sbjct: 294 HAVELLTENNLEVAKQYAASIEKYNSERRTLDQEITKEAFQQI--EKLEEQERFTTVVYD 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 ENWHKGVIGIVASRLIETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEQCKEH--IT 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT++  N+    D F++   N +   + TP   ID  +    +      +
Sbjct: 409 QFGGHKYAAGLTLKEENYQAFKDAFEEVVKNTIDKNLLTPEILIDKEITLKEITPKFYRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQS-IRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
           L+   P+G  N +P+F     K     + V     HL++    + S  +  I F +    
Sbjct: 469 LKQFAPFGPQNMSPIFMSTQLKDTGFAKCVGAEKDHLKLCAVQRKSPRINGIGFNLGD-- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +       K       +  N W G    QLR+ D  
Sbjct: 527 --KLSKVQDKKTFDAVYSIDENTWEGKTTLQLRLRDIR 562


>gi|227537505|ref|ZP_03967554.1| single-strand DNA specific exonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227242642|gb|EEI92657.1| single-strand DNA specific exonuclease [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 566

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/578 (28%), Positives = 274/578 (47%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RWV     E  N+ + ++ +  I  +++ +L+ R + + D A+ F  PS+  L  DP +
Sbjct: 3   KRWVLKSKSEH-NKVIKLSDELGISTVLSELLIAREIETFDQARTFFRPSLEELH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  RI +AI N+EKI+I+GDYDVDG  +VA++  F          YIPDR  +G
Sbjct: 61  MKDMDIAISRIEKAIGNNEKILIYGDYDVDGTTAVAVVYNFFREFHSRIEFYIPDRYAEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  + +D I+ DHH        A A+
Sbjct: 121 YGISMQGVDYAAENGFSLIIALDCGIKANDKIDYANARNVDFIIGDHHLPGDVLPNAIAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L   G+ F ++    +    D            LDLVA++   D+V
Sbjct: 181 LDPKREDCPYPYKELSGCGIGFKIIQAFIQKNGMD-----IQQCYQFLDLVAVSIASDIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR     GL         GL+ALI    N +   T  ++ + IGP INA GRI  
Sbjct: 236 PITGENRILTHFGLQKLNTNPCCGLQALINLSSNKTGTFTVNDIVFQIGPRINAAGRIDH 295

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +    +LLIS   QE +  +  +D  N  R+  +  + E+A A +  + ++++     V+
Sbjct: 296 AKDAVKLLISKSLQEAKDFSESIDDQNNVRKDFDLRITEEALALI-DESENLKARKSTVL 354

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK+ RP+  ++    G   GS RS+ GFD+ + +S      +
Sbjct: 355 FKSDWHKGVIGIVASRLTEKYYRPTIILTQTN-GHVAGSARSVIGFDLYEALSEC--SDL 411

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT++  N       F+   + ++   +      I+  +  + +     
Sbjct: 412 LDQFGGHKYAAGLTMKLENVTSFQQKFEDVVNTLIKPEMLQQEVLIELTIPLTEITSRFF 471

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            +L+   P+G  N  P+F      +  +  +V   H++MT   +DS   + I F +    
Sbjct: 472 KILKQFEPFGPQNDAPIFLTKKVVVIGNAYLVGTNHIKMTIRQEDSAAFECIGFGLAE-- 529

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  + GK   +   +  N WRG K  QL +    
Sbjct: 530 --HIAHINSGKPFDICYVIEENNWRGKKNLQLNIKAIR 565


>gi|222056528|ref|YP_002538890.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp.
           FRC-32]
 gi|221565817|gb|ACM21789.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp.
           FRC-32]
          Length = 574

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 182/578 (31%), Positives = 279/578 (48%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74
            RW     +        +        ++AR+L+NR       A  F   S+  L  DP +
Sbjct: 7   KRWELRKSEPDD--VERLVSAGVATPLLARLLLNRVPCDCKAAASFFTSSLAELH-DPYM 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   + A  R+++A    EKI I GDYDVDG  SV L++ F     ++A   IPDR+VDG
Sbjct: 64  LLGMESAVERLLRAAVGKEKICIHGDYDVDGITSVVLLLTFFQTIGIDACYIIPDRLVDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++K       +++TVDCG T+    +     GID+I+ DHH        A A+
Sbjct: 124 YGLSADAVDKAARLKTDVMVTVDCGITALAEAKLCAEAGIDLIITDHHTPGEALPDACAV 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252
           +NPN+         L   GV F +++ +   LR +         +L   LDLVAL T+ D
Sbjct: 184 INPNQKGCNYPFKALAGVGVAFNLVIALRSRLRAEGFFSGRAEPNLREYLDLVALGTIAD 243

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           VVPLI  NR     GLM   +   PG++AL     I+  +    +G+ + P +NA GR+ 
Sbjct: 244 VVPLIDQNRILAKYGLMELSQSHRPGIQALKRVAGITGDVGCGAVGFRLAPRLNAAGRLE 303

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            + +   LL+  D +  E LA  LD  N  R+ +E  +L  A   V       +    IV
Sbjct: 304 NAAMAVELLLCKDLKSAEPLAAALDASNAERQAVEREILNDALQMVRDDA-AFKGRKSIV 362

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WH G++G++A+RL + + RP+  I+ ++ G G GSGRSI GF + + ++   E  
Sbjct: 363 LASEEWHSGVIGIVASRLVDLYHRPTILIALKD-GNGKGSGRSIAGFHLHEALTACAEH- 420

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LVK GGH  AAGL +         + F + A  ++      PV  ID  L A  + + L
Sbjct: 421 -LVKFGGHKHAAGLAIAEETLQAFVERFNEIADGLLTPEDLIPVLLIDAELKAEDLTLDL 479

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +  LE   P+G GNP PVF   + ++   R+V   HL++  + + ++  +AIAF + G  
Sbjct: 480 VSELERMKPFGMGNPEPVFLLQDAEVLESRIVKDTHLKLRLQVE-AKKFEAIAFSMAGR- 537

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  S G+R+ +     +N W G    QL V D  
Sbjct: 538 ------VSVGERIDLAFSPAINNWNGRSSLQLTVKDLR 569


>gi|312888553|ref|ZP_07748122.1| exonuclease RecJ [Mucilaginibacter paludis DSM 18603]
 gi|311298867|gb|EFQ75967.1| exonuclease RecJ [Mucilaginibacter paludis DSM 18603]
          Length = 572

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/582 (29%), Positives = 280/582 (48%), Gaps = 19/582 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW     + G    + ++ +  I  +++ +L++R +S  + A+ F  P I  L  DP +
Sbjct: 3   KRWSIK-RKPGEAEIIKLSAELNIDPVLSTLLLHRQISNLEQARYFFRPDINHLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA  RI QA    EKIMI+GDYDVDG  SVAL+  F  +   N + YIPDR  +G
Sbjct: 61  MKDMEKAILRIEQAFAAGEKIMIYGDYDVDGTTSVALVYSFFKNYYPNLDYYIPDRYKEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  S D + YA   GID I+ DHH        A A+
Sbjct: 121 YGISTQGIDFAHQHGISLIIALDCGIKSVDKIAYANTLGIDFIICDHHTPGEIIPDATAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P RLD       L   G+ F ++    +             L+S L+LVA++  CD+V
Sbjct: 181 LDPKRLDCEYPYKELSGCGIGFKLIQAYAQK-----NNIPFEQLMSYLELVAISIACDIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            + G NR     GL+        G+K L+     +   T  ++ + IGP INA GRI ++
Sbjct: 236 HITGENRVLAHYGLIKINSNPCIGVKTLMLAAGRTENYTVSDIVFTIGPRINAAGRIDDA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LLI+   +        +++ N  R+  + ++ + A + + +    + + S  VV 
Sbjct: 296 KHAVELLIACTDEVATAKGSIINLKNIERKEHDLSITDAALSMIDSDPVMVARKST-VVF 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G++G++A+RL EK+ RP+  ++ + +G   GS RS+ GFD+ +         +L
Sbjct: 355 NADWHKGVIGIVASRLTEKYYRPTIVLT-KSNGHVAGSARSVYGFDLYEA--LCGCSDLL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGH  AAGLT+   N       F++  +  +   +     +ID  L    ++     
Sbjct: 412 IQFGGHKYAAGLTMAPENVEAFSQRFEEVVNATITDEMLVQEIRIDAELKFKQIDAKFFR 471

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +L   GP+G  N +PVF   N  +  +  +V   H++MT    DS +   IAF +     
Sbjct: 472 ILSQFGPFGPENMSPVFLTKNVYVSGNATLVGANHIKMTVIQNDSASFDCIAFNM----- 526

Query: 554 GEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           GE+L + S+G    +   +  N WR  +  QL +      E 
Sbjct: 527 GEYLPKISKGIPFDICYTIEENVWRERRSIQLNIKGIKTYEA 568


>gi|300770902|ref|ZP_07080779.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762175|gb|EFK58994.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 573

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/578 (28%), Positives = 274/578 (47%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RWV     E  N+ + ++ +  I  +++ +L+ R + + D A+ F  PS+  L  DP +
Sbjct: 10  KRWVLKSKSEH-NKVIKLSDELGISTVLSELLIAREIETFDQARTFFRPSLEALH-DPFL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  RI +AI N+EKI+I+GDYDVDG  +VA++  F          YIPDR  +G
Sbjct: 68  MKDMDIAISRIEKAIGNNEKILIYGDYDVDGTTAVAVVYNFFREFHSRIEFYIPDRYAEG 127

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  + +D I+ DHH        A A+
Sbjct: 128 YGISMQGVDYAAENGFSLIIALDCGIKANDKIDYANARNVDFIIGDHHLPGDVLPNAVAV 187

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L   G+ F ++    +    D            LDLVA++   D+V
Sbjct: 188 LDPKREDCPYPYKELSGCGIGFKIIQAFIQKNGMD-----IQQCYQFLDLVAVSIASDIV 242

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR     GL         GL+ALI    N +   T  ++ + IGP INA GRI  
Sbjct: 243 PITGENRILTHFGLQKLNTNPCCGLQALINLSSNKTGTFTVNDIVFQIGPRINAAGRIDH 302

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +    +LLIS   QE +  +  +D  N  R+  +  + E+A A +  + ++++     V+
Sbjct: 303 AKDAVKLLISKSLQEAKDFSESIDDQNNVRKDFDLRITEEALALI-DESENLKARKSTVL 361

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK+ RP+  ++    G   GS RS+ GFD+ + +S      +
Sbjct: 362 FKSDWHKGVIGIVASRLTEKYYRPTIILTQTN-GHVAGSARSVIGFDLYEALSEC--SDL 418

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT++  N       F+   + ++   +      I+  +  + +     
Sbjct: 419 LDQFGGHKYAAGLTMKLENVTSFQQKFEDVVNTLIKPEMLQQEVLIELTIPLTEITSRFF 478

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            +L+   P+G  N  P+F      +  +  +V   H++MT   +DS   + I F +    
Sbjct: 479 KILKQFEPFGPQNDAPIFLTKKVVVIGNAYLVGTNHIKMTIRQEDSAAFECIGFGLAE-- 536

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  + GK   +   +  N WRG K  QL +    
Sbjct: 537 --HIAHINSGKPFDICYVIEENNWRGKKNLQLNIKAIR 572


>gi|326798144|ref|YP_004315963.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium sp.
           21]
 gi|326548908|gb|ADZ77293.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium sp.
           21]
          Length = 566

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/578 (29%), Positives = 283/578 (48%), Gaps = 19/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RWV        +   ++++   I  ++AR+LV R V   + A+ F  PS+  L  +P +
Sbjct: 3   KRWVERNT-VDTDVVTSLSKALNIHKVLARLLVQRGVFDFEQARKFFRPSLDDLH-NPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A RRI QAI   E I+++GDYDVDG  +V+++  FL     +   YIPDR  +G
Sbjct: 61  MKDMDLAIRRIEQAIGMKENILVYGDYDVDGTTAVSVLYSFLKRFYNHIGYYIPDRYKEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++        LII +DCG  S D ++YA  +GID I+ DHH   +E   A A+
Sbjct: 121 YGISFQGIDYAAENNYSLIIALDCGIKSVDKIEYAAQKGIDFIIGDHHTPGNELPKATAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L   G+ F ++    +  + +       ++   LDLVA++   D+V
Sbjct: 181 LDPKRKDCNYPYKELSGCGIAFKIIHAFAKTNQLEE-----AEVFQYLDLVAVSIASDIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL       + GL+AL++    +  +   ++ + IGP INA GRI  +
Sbjct: 236 PITGENRVLAYYGLKKLNNNPSFGLRALVDLSTKAGEMNLTDVIFQIGPRINAAGRIDHA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               +LLIS   +E +     +DV N  R+  ++ +  +A  +++ + + + +    VV 
Sbjct: 296 KDAVKLLISKSLEEAKNCCGLIDVQNMQRKDFDARITAEAL-EIIQKSETLIKRKTTVVY 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+RL EK+ RP+  ++ + +G   GS RS+ GFD+ + +S      +L
Sbjct: 355 QEDWHKGVIGIVASRLTEKYYRPTIVLT-KSNGHVAGSARSVAGFDLYEALSEC--SDLL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAGLT++  N   L   F+      +   +  P   ID  ++ + +      
Sbjct: 412 EQFGGHKYAAGLTMKAENVPALQSKFEAVVAQSIAPELLEPEISIDAKIHLADITPKFFR 471

Query: 495 MLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +L+   P+G  N  PVF   N   +   ++V   HL+M    + +     I F      L
Sbjct: 472 VLKQFAPFGPENNAPVFIAKNVYSVGEAQLVGANHLKMYITQEGAPAFDCIGFG-----L 526

Query: 554 GEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           GE++   ++G        +  N WR  K  QL +    
Sbjct: 527 GEYITHINKGIPFTACFSIEENVWRDKKNIQLNLKGIR 564


>gi|220920253|ref|YP_002495554.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           nodulans ORS 2060]
 gi|219944859|gb|ACL55251.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium
           nodulans ORS 2060]
          Length = 597

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 274/589 (46%), Positives = 364/589 (61%), Gaps = 3/589 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            +  L V  S+ G  W     + G   A   I Q H +P+++ARVL  R V+      FL
Sbjct: 8   PRPLLDVHRSVLGRPWRDRCAEAGPQAAAVTIAQSHGLPEVLARVLAGRGVAPGEVPGFL 67

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP IL D + AA R+  A+   EK+ IFGDYDVDGAAS AL+   L    V
Sbjct: 68  EPRLRDLMPDPSILVDMEAAADRLAHAVLRREKVAIFGDYDVDGAASAALLAGTLRDLGV 127

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++TVDCG+  +  L  A   G+DV+V+DH
Sbjct: 128 PFRLHIPDRITEGYGPNGEAIRMLAGEGASLLVTVDCGTAGHGPLAEAARLGLDVLVLDH 187

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241
           H       PA A+VNPNRLDDLSG GHLCAAGVVFL LV + R LR+D       DL++ 
Sbjct: 188 HGAPETLPPARAVVNPNRLDDLSGLGHLCAAGVVFLTLVALKRRLRRDGV--EVPDLMAG 245

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVALATV DVVPL+GLNRA+V +GL V R +G  GL AL++   ++ P  A +LG+++
Sbjct: 246 LDLVALATVADVVPLLGLNRAFVRQGLAVMRGRGRRGLAALLDAAGLAEPPQAWHLGFLV 305

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LG+RLL+ +D  E   +A +LD LN+ R+ +E+A + +AEA    +
Sbjct: 306 GPRINAGGRIGDATLGARLLLCEDPIEAAGIAAQLDQLNRERQAIEAAAVAEAEALAALR 365

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
            +      VIV     WHPG+VGL+AARLKE+FGRP+FA +  EDG   GSGRSI G D+
Sbjct: 366 LERDPDQPVIVAGSPDWHPGVVGLIAARLKERFGRPAFAFALREDGTATGSGRSIIGADL 425

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G+ V  AVE G+  KGGGHAMAAG+T+  V+  R  D   +     V          +DG
Sbjct: 426 GRAVRRAVEAGLAAKGGGHAMAAGVTLAAVDLDRFRDGLSQELAAAVGDARAAQALLVDG 485

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
           VL+A  V   L+  +E AGP+G G P PVFA   H++   R+V   H++     +D  T+
Sbjct: 486 VLSAGGVQPDLVAAVERAGPFGQGAPEPVFALARHRIADARIVGTGHVKAQLRGRDGVTV 545

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            AIAFR    PLG+ L++S G+ +H  G L  + WRG +R QLR+ DA+
Sbjct: 546 GAIAFRAAEGPLGQLLLRSIGRDIHAAGTLSRDRWRGGERVQLRLCDAA 594


>gi|288802718|ref|ZP_06408156.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           melaninogenica D18]
 gi|288334868|gb|EFC73305.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           melaninogenica D18]
          Length = 574

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/585 (27%), Positives = 283/585 (48%), Gaps = 22/585 (3%)

Query: 16  FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W         +N A  + +K  I  I+A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYTPPADTQVNAAKDLGEKLGISPILASLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+ + E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA  QGID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDFAKETGVKLIIILDCGIKAIEEITYAKEQGIDFIICDHHVPDEVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     +LC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDSYPFKNLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLKA+++   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILTFHGLKQLNQNPSLGLKAIVDICGLNSRELSMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  +       A  +D  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKKSVDLLVEREYSLALDQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  ++    GS RS+ GFD+   +       
Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT++  +       FQ +    +       +  ID V++   +   L
Sbjct: 413 LLLNFGGHTYAAGLTMKWADVKEFRKRFQAYVEEHIEPEQREAILDIDAVIDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GNP P+F   +     + +VV     H+++     + +  +  IAF  
Sbjct: 473 HTDLKRFAPFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++     QL++ D  P E
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTE 572


>gi|311031522|ref|ZP_07709612.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. m3-13]
          Length = 781

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 182/593 (30%), Positives = 298/593 (50%), Gaps = 27/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW     +        + +   I  ++A +LVNR     D AK+FL  + +    D
Sbjct: 3   ASKSRWNV--SESNKELVDQLAESLDIAPLIASLLVNRGFDTIDAAKEFLYTNDQEFH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P ++ D DK   R+ QAI   EKI++FGDYD DG +S  +M+  L       + YIP+R 
Sbjct: 60  PFLMEDMDKLVERVNQAIAKEEKILVFGDYDADGVSSTTVMVTALQEVGALVDFYIPNRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN +  ++    G  +IITVD G ++    + A   G+D+I+ DHH+   E   A
Sbjct: 120 TEGYGPNENAFKQAKENGYSVIITVDTGISALYEAKVAKELGLDLIITDHHEPGPELPDA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P +         L   GV + V   +     +            LLD+ A+ T+ 
Sbjct: 180 YAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPE-----------HLLDVAAIGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+VPL+G NR    KG+   ++    GLKAL+++  +    +T E +G+ IGP INA GR
Sbjct: 229 DLVPLVGENRLLASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  ++    LL+++D +E +MLA +++  N+ R+ + + + E+A  +V  +    +    
Sbjct: 289 LDNADPAVHLLMTNDQEEAKMLAEEMESYNKERQQIVTQITEEAIQQV-EEKYPPEDNGF 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           I+VEG+ W+ G++G++A+RL ++F RP+  +S  E+ G   GS RSI GFD+ + +S   
Sbjct: 348 IIVEGNNWNAGVIGIVASRLVDRFYRPTIVLSLDEDKGLAKGSARSIVGFDLFENLSEC- 406

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T++  +   L     + A  I+     TP+ ++D       V 
Sbjct: 407 -RDILPHFGGHPMAAGMTLKIEDVNELRQRMNQKALEILTKEDFTPITEVDIECTVGEVT 465

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547
           +A I+ LE   P+G  NP P     +   Q IR +     HL++  E Q+  +L  + F 
Sbjct: 466 LATIEQLEMLAPFGVANPKPKVLVKDVLPQQIRQIGNKSNHLKLVIE-QEGSSLDCVGFG 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              T    +   S G  + V G L +N W   ++ QL + D    +   F  +
Sbjct: 525 FGET----YHHVSPGASLDVLGELSINEWNNFRKPQLFLKDIRVTDWQLFDIR 573


>gi|189502726|ref|YP_001958443.1| hypothetical protein Aasi_1422 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498167|gb|ACE06714.1| hypothetical protein Aasi_1422 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 566

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 178/579 (30%), Positives = 282/579 (48%), Gaps = 17/579 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RWV     E      ++     +   +A +LV + V+  + AKD+  PS+  L  DP I
Sbjct: 3   KRWVFQTMPE-PTVVASLANAIGVDSSIAALLVQKGVTDFNQAKDYFRPSLADLH-DPFI 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA  R+++AI N E+I+I+GDYDVDG  SV+L+  FL         YIPDR  +G
Sbjct: 61  MKDMDKAVGRLLRAIENQEEILIYGDYDVDGVTSVSLVYGFLKQYHSKLQFYIPDRYKEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +   I  G  LIIT+DCG  + + +Q A   GIDVIV DHH+      PAYA+
Sbjct: 121 YGVSKQAINWAIETGISLIITLDCGIKATECIQQAQIAGIDVIVCDHHEPGEGLPPAYAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P +         L   GV F +L           +      L   LDLVA++  CD+V
Sbjct: 181 LDPKQKTCPYPFKELSGCGVGFKLLQAFV-----LKQNISLDILYRYLDLVAISIACDLV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL   NR     GL       + G++A+I+  N+   +    L + +GP +NA GR+   
Sbjct: 236 PLTDENRILAYHGLKRLNNSPSFGIQAIIQVANLPWTLGISQLVFGLGPRLNAAGRVDHG 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +L   LL+++DS     LA +++  N  RR ++S +  +A  +++   D    A   V+ 
Sbjct: 296 SLAVNLLLAEDSVTASSLARQIEDKNGFRRYLDSTITAEAL-QLMKASDASLIAKTTVLF 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+R  E + RP+  ++     K  GS RS+ G++I + ++   E  +L
Sbjct: 355 KEDWHKGVIGIVASRCIEHYYRPTIILTASG-NKATGSARSVAGYNIYEAITECAE--LL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGHA AAGLT+   N     + F++   + +   +  PV KID +L    V     +
Sbjct: 412 EQYGGHAHAAGLTLPLENIISFQERFEQVVSSTISQELLIPVQKIDLLLPLEKVTNKFYN 471

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPL 553
           +L    P+G GN  PVFA         R++   HL++T  E      + AI F +     
Sbjct: 472 ILNQMAPFGNGNMRPVFATELVIATKYRILKENHLKLTVQEPASGICIDAIGFGLAKYAH 531

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               +    K   +   +  N ++G    QL +    P+
Sbjct: 532 ----LVCDRKPFKIAYTIERNNYQGQVNLQLNIKGLQPI 566


>gi|332291722|ref|YP_004430331.1| single-stranded-DNA-specific exonuclease RecJ [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169808|gb|AEE19063.1| single-stranded-DNA-specific exonuclease RecJ [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 563

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/579 (28%), Positives = 272/579 (46%), Gaps = 22/579 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +   + ++  + + ++R+L+ R++   + AK F  PS+  L  DP ++
Sbjct: 2   RWTLKPKPE-AQKVTNLAKELGVEEPISRLLIQRDIDTFEKAKQFFRPSLDDLY-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI QAI   E I++FGDYDVDG  SVALM  +L         YIPDR  +GY
Sbjct: 60  KDMDVAVARIEQAIAQGENILVFGDYDVDGTTSVALMSSYLDTIHPQVATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + + + YA  +GID I+ DHH+   +   A A++
Sbjct: 120 GVSYMGIDFAADNDMTLIIALDCGVKAIEKVAYAKEKGIDFIICDHHRPGDQLPDAVAIL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  I    +Q+       +LL  LDLVA A   D+VP
Sbjct: 180 DPKREDCSYPYDELCGCGVGFKLISAIALSRKQN-----FEELLPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G +A+I++V     +T  ++ ++IGP INA GR+   N
Sbjct: 235 ITGENRILAYHGLNVINHAPRAGFEAIIKQVK-KQTLTITDVVFIIGPRINAAGRMVHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   +       A +++  N +R+  + ++ +QA  +++      +     VV  
Sbjct: 294 HAVTLLRETNLDAAIKFASEIEQYNSDRKEADKSITQQALDQIIE--SKEEGNKTTVVFQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 EDWHKGVIGIVASRLIETYYRPTLVFTRSGD-KYAASARSVKGFDVYNALHECAEH--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +    + F++         +  P   ID  ++ + +      +
Sbjct: 409 QFGGHKYAAGLTLAPEQYEAFKEKFEQVVAASCDERLLVPEIAIDSEIDLADITPKFHRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMTFESQD-SETLQAIAFRVYGT 551
           L+   P+G  N +P F   N       + V     HL+ T    +  + +  I F +   
Sbjct: 469 LKQFAPFGPQNMSPTFMTQNLIDTGYGKKVGADQTHLKATVIQNNRGQRIGCIGFNLGD- 527

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              ++ +    K       L  N W G+   QLR+ D  
Sbjct: 528 ---KYELIEDKKIFKAAYSLDENEWNGNVSLQLRLKDIQ 563


>gi|302345680|ref|YP_003814033.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           melaninogenica ATCC 25845]
 gi|302150163|gb|ADK96425.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           melaninogenica ATCC 25845]
          Length = 574

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/585 (27%), Positives = 282/585 (48%), Gaps = 22/585 (3%)

Query: 16  FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W         +N A  + +K  I  I+A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYTPPADTQVNAAKDLGEKLGISPILASLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+ + E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA  QGID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDFAKETGVKLIIILDCGIKAIEEITYAKEQGIDFIICDHHVPDEVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD      LC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDTYPFKDLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLKA+++   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSLGLKAIVDICGLNGRELSMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  +       A  +D  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKKSVDLLVEREYSLALDQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  ++    GS RS+ GFD+   +       
Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT++  +       FQ +    +       +  ID V++   +   L
Sbjct: 413 LLLNFGGHTYAAGLTMKWADVKEFRKRFQAYVEEHIEPEQREAILDIDAVIDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GNP P+F   +     + +VV     H+++     + +  +  IAF  
Sbjct: 473 HTDLKRFAPFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++     QL++ D  P E
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTE 572


>gi|95929295|ref|ZP_01312039.1| single-stranded-DNA-specific exonuclease RecJ [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134793|gb|EAT16448.1| single-stranded-DNA-specific exonuclease RecJ [Desulfuromonas
           acetoxidans DSM 684]
          Length = 576

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 188/579 (32%), Positives = 304/579 (52%), Gaps = 16/579 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W               + +     +V ++L  R +S  + A+ FL  S+  L PDP+ 
Sbjct: 7   RSWKER-QSAKPVDWQQWSARLGCAPLVCQLLSQRGISTLEEAQAFLTASLSQL-PDPMA 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   + A  R+VQA+   E I + GDYDVDG +  AL+ + L    VN   +IP R+ DG
Sbjct: 65  LRGMESAVDRLVQAVKAGEPIAVHGDYDVDGISGTALLTQCLRWFGVNVTYHIPLRMRDG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   + + + +G +L+++VDCG +++   Q A + GI++I+ DHHQ       + + 
Sbjct: 125 YGLSEVALRRTLEQGIRLVVSVDCGISAHAEAQLAADLGIELIITDHHQPPETLPVSLSC 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDV 253
           +NP   D       L   GV F+V++ +   LR+   +P    DL  +LDLVAL TV D+
Sbjct: 185 INPWLPDCSYPDKRLSGVGVAFMVMIALRARLRETGNLPDPEPDLRYVLDLVALGTVADL 244

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           VPL G+NRA V  GL +  +Q   GL AL++   + + +TA  +GY + P +NA GR+ +
Sbjct: 245 VPLQGVNRALVSSGLRLMAQQPRVGLAALVKVAEVRA-VTAGVVGYQLAPRLNAAGRLED 303

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + LG  LL+ + SQ    +A +L+  N  RR +E  +L+QA  ++     D   A  IV+
Sbjct: 304 ATLGVDLLLDEVSQSAMPVAEQLNQFNHQRRQIEQQVLDQAIERIERDLTD--DALTIVL 361

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             +RWH G++G++A+RL E++ RP+  I+  E+G+G GS RSI+GF + +      E   
Sbjct: 362 ADERWHAGVIGIVASRLVERYHRPTVLIA-LEEGQGKGSARSIKGFHLYQAFEACQE--P 418

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++     R  + F+++A + +  ++   V + D  L    ++  L 
Sbjct: 419 LSGFGGHEFAAGLSIDAACVSRFTEQFERYAQSHLNPVMLGAVREYDAELVLEEIDETLY 478

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           D L++  P+G GNP PVF      +     V   HL+ + + QD  ++  IAF +     
Sbjct: 479 DELQALAPFGMGNPEPVFVVRQVHVHRPSCVAEKHLRFSLQ-QDGYSVPCIAFGMA---- 533

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +   +  G+ + V   + +N WRG K  QL V D  P 
Sbjct: 534 -QRQDEVVGQAVDVLFQVGMNTWRGQKSLQLIVKDIMPS 571


>gi|89100792|ref|ZP_01173645.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. NRRL
           B-14911]
 gi|89084495|gb|EAR63643.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. NRRL
           B-14911]
          Length = 788

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 183/592 (30%), Positives = 294/592 (49%), Gaps = 27/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S  RW+    Q   ++A  +  +  I  IVA +LVNR + + + A+DFL  +      DP
Sbjct: 4   SKTRWIVR--QSDKDKADTLISELKISPIVASLLVNRGLDTPESAQDFLYGN-NGEFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L   D A  RI +AI  +E I+I+GDYD DG  S ++MM  L     N + YIP+R  
Sbjct: 61  FLLAGMDAAVSRINKAINENEPILIYGDYDADGVTSTSVMMITLRSLGANVDFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN          G +L+ITVD G ++      A   G+D+I+ DHH+       A 
Sbjct: 121 EGYGPNEGAFRHAAEIGTKLLITVDTGISAVHEASIAKELGMDLIITDHHEPGPVLPEAL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P     L     L   GV F V   +   + +            LL++ A+ TV D
Sbjct: 181 AIIHPKLEGSLYPFRELAGVGVAFKVAHALLGNIPE-----------ELLEIAAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311
           +V L G NR  V +G+   +     GL AL +  N+    +  E +G+M+ P +NA GR+
Sbjct: 230 LVSLKGENRLLVQRGIKKLKVTKRAGLLALFKLANVEQAAVDEETIGFMLAPRLNAAGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             ++    LL++DD +E  M+A ++D +N+ R+ + S + E+A  +V  +    +  +V+
Sbjct: 290 DSADPAVHLLLTDDREEAAMIAEEIDSMNKERQSIVSQIAEEAIKEVEEKYPAGEN-AVL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+  + W+ G++G++A+RL +KF RP+  +SF+ E G   GS RSI GFD+ K +S    
Sbjct: 349 VIGKEGWNAGVIGIVASRLVDKFYRPAIVLSFDKEKGTAKGSARSIAGFDLYKNLSAC-- 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAG+T+   + G L +     A   +      PV  +D  ++   V++
Sbjct: 407 RDILPHFGGHPMAAGMTLGLGDVGELRERLNGLAKEQLSDEDFIPVASLDAEVSLEDVSL 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             I+ ++   P+G  NP P     +  + S+R +     HL+M    + S  L  I F +
Sbjct: 467 PAIEQMQLLSPFGMDNPKPRVLIKDAPIASMRKIGSGQNHLKMAL-GEGSSALDGIGFGL 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                  F   S   R+ V G L +N W   ++ Q+ + D S  E   F  +
Sbjct: 526 GEL----FHHISADSRISVIGELSINEWNNIRKPQIFLHDLSVAEWQLFDLR 573


>gi|323702156|ref|ZP_08113823.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532843|gb|EGB22715.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum
           nigrificans DSM 574]
          Length = 889

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/579 (29%), Positives = 284/579 (49%), Gaps = 21/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W        +     I+ +  +  I+A++L+NR + ++D A+ FL   +  L   P +
Sbjct: 5   KKWRVKSPNPALQHI--ISTELGVSHILAQLLINRGIYTVDQARAFLGSELNRLF-SPWL 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA  RI+ A    E I+++GDYDVDG     +++  L       + +IP R+ +G
Sbjct: 62  MKDMEKAVERILLAREKGEYILVYGDYDVDGITGTTILVLALRKLGCQVDYFIPHRLEEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E+ + +G  L++TVDCG +    +  A    +D+++ DHH+      PA A+
Sbjct: 122 YGLNKEALERAVEQGVTLVVTVDCGISGAAEVAAARELSLDIVITDHHEPPDILPPAVAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R D       L   GV   ++  +++      +     +    LDLV L TV D+V
Sbjct: 182 VNPKRNDCHYPFKELAGVGVALKLIQGLFQRAGLGQR-----EWEEYLDLVCLGTVADIV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V  GL        PGL+ALI+   I S  +    LG+ + P +NA GR+G+
Sbjct: 237 PLQGENRIIVKHGLDKISNTCRPGLQALIKISGIRSESLGTRELGFGLAPRLNAAGRMGD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + LG  LL++ D    E LA  L+  NQ R+ +E+ +L +A A +      + +  V+V+
Sbjct: 297 ATLGVELLLASDPTCAEELATTLNKGNQERQQVEAKVLSEAMALLEAHPT-MAEDKVLVL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WHPG++G++A+RL ++F RP   IS  EDGKG GS RSI GF++ + +     +  
Sbjct: 356 SSANWHPGVIGIVASRLVDRFYRPVLMIS-LEDGKGKGSARSIPGFNLYQAMVNC--QDY 412

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGHAMAAG +++            K+A  ++   + TP   +D ++  + +++  +
Sbjct: 413 LQQFGGHAMAAGFSIDADKIDDFRLAINKYADEVLTEELLTPNLDLDAMVQLTDLSLDTV 472

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             L+   P+G  NP P+       + + R V     HL++     D   L  I F +   
Sbjct: 473 QELDQLSPFGHCNPGPILGCCEATVINCREVGKNGGHLKLRVR-GDHVILDGIGFNMASY 531

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 M +    + +     +N W G    QL V +  
Sbjct: 532 S----EMLATNDTIDMAFVPSINVWHGRASVQLEVKEFK 566


>gi|150024966|ref|YP_001295792.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771507|emb|CAL42976.1| Single-stranded-DNA-specific exonuclease RecJ [Flavobacterium
           psychrophilum JIP02/86]
          Length = 562

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/577 (29%), Positives = 282/577 (48%), Gaps = 21/577 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW     +    +   + +   I D VA +L+ R + + D AK F  PS+  L  +P ++
Sbjct: 2   RWTIKP-KPAEEKVKHLVEVLNIKDFVASLLIQRGIETYDQAKTFFRPSLDDLH-NPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA RRI +AI N+E IM+FGDYDVDG  +V+L+  +L     N   YIPDR  +GY
Sbjct: 60  KDMDKAVRRIEKAIANNENIMVFGDYDVDGTTAVSLVSSYLKSYYKNVATYIPDRYDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  S + + YA  + ID I+ DHH+       A A++
Sbjct: 120 GISYKGIDYADDNNITLIIALDCGIKSVEHVAYAKAKNIDFIICDHHRPGVFLPEAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +      +N+     D +  LDLVA A   D+VP
Sbjct: 180 DPKRPDCFYPYDELCGCGVGFKLIQAL-----GENRNQTITDFIPYLDLVATAIAADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V      PG+KALI+ +     +T  ++ ++I P INA GRI   N
Sbjct: 235 ITGENRVLAKFGLEVINTNPRPGIKALIQNIK-KETLTITDVVFIIAPRINAAGRIKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              +LL   +  + E  A ++++ N +R+ ++  + ++A  ++  + +  +     VV  
Sbjct: 294 YAVQLLTEFNLPQAEEFATQIEIFNADRKDLDKQITKEALQQI--ENNKEENNFTTVVYQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E   +P+   +   D K   S RS++ FD+   +        L 
Sbjct: 352 EDWHKGVIGIVASRLIETHYKPTIVFTKSGD-KLAASARSVKDFDVYNALEE--SAAFLE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAG+T++  N+ +  + F++   N +   +  P   ID  L  S +N  L+ +
Sbjct: 409 QFGGHMYAAGMTLKEENYKKFKNKFEEVVKNSIQPDLLIPEIAIDAELKLSDINEKLVRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552
           L+   P+G  N  PVF   N       + +     HL++  +  +SE   AI F +    
Sbjct: 469 LKQFEPFGPENMTPVFISKNINDTGYAKTLGKDEEHLRLFVKQNNSEGFAAIGFNLANKK 528

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                +    K      ++  N W G+   QLR+ D 
Sbjct: 529 A----LTENQKPFDAVYYIDENIWNGNVTLQLRLRDI 561


>gi|16125635|ref|NP_420199.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter
           crescentus CB15]
 gi|221234387|ref|YP_002516823.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter
           crescentus NA1000]
 gi|13422741|gb|AAK23367.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter
           crescentus CB15]
 gi|220963559|gb|ACL94915.1| single-stranded-DNA-specific exonuclease recJ [Caulobacter
           crescentus NA1000]
          Length = 606

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 227/593 (38%), Positives = 343/593 (57%), Gaps = 8/593 (1%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           ++  AFLGVE S+SG  W        +     I Q+H + + +A+ LV+R V++++A+ +
Sbjct: 9   ISSSAFLGVERSLSGRAWRERP--ADLAVVREIQQRHGLIEPLAKALVSRGVTLEHAEHY 66

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L P+++ L PDP + TD D+AA  ++ A+      M+F DYDVDGA S A ++R+  H  
Sbjct: 67  LRPTLKALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMG 126

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           V   +YIPDR+ +GYGP+P+   K  + GA+L++T+DCG+ +YDA+  A   G++V+VID
Sbjct: 127 VELPIYIPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVID 186

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFD 237
           HH ++ +   A A+VNPNR    SGQG L AAGV F++L  + R  R+           D
Sbjct: 187 HHLMREDPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLFTEDRPQPD 246

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
               LDLVAL  VCDV  L+G NRA    GL       NPGLKAL E    S   +    
Sbjct: 247 PRQWLDLVALGEVCDVTQLVGFNRALTALGLRAMGAWANPGLKALFEVGKGSGEPSVFTA 306

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+++GP INAGGR+G S+LG+RLL +DD  E   LA +LD LN  R+ +E+A++E+A A 
Sbjct: 307 GFILGPRINAGGRVGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAM 366

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSI 416
           +    +    A VIVV GD WHPG++G++A RL+E++ +P   I        G GSGRS 
Sbjct: 367 LERGSNFNPDAPVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQ 426

Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
            G ++G+ +  A E G+L+ GGGHAMAAGL++          F ++     + A+     
Sbjct: 427 SGVNLGRAIQAAFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVEA- 485

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536
            ++D ++   A N AL+D  +   P+G GNP P+FA    + + +  +   H++M     
Sbjct: 486 VEVDALVQPRAANRALLDDFQRLAPFGPGNPEPLFALSQVRPERVSALKGGHVRMDLVGP 545

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + ++AI++R   TPLG+ L+ + G  + V G L  + + G    QL + DA
Sbjct: 546 TGDRIKAISWRSAETPLGQRLL-AGGGPLDVVGKLKPDDYMGRNGVQLEIEDA 597


>gi|170741326|ref|YP_001769981.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium sp.
           4-46]
 gi|168195600|gb|ACA17547.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium sp.
           4-46]
          Length = 597

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 276/592 (46%), Positives = 364/592 (61%), Gaps = 3/592 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            +  L V  S+ G  W          +A A I Q H +P+++ARVL  R V+      FL
Sbjct: 8   PRPLLDVHRSVLGRPWRERCADGPPQQAAATIAQSHGLPEVLARVLAGRGVAPRDVPLFL 67

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P +R LMPDP +L D + AA R+  A+   EK+ IFGDYDVDGAAS AL+   L    V
Sbjct: 68  EPRLRDLMPDPAVLLDMEAAADRLAHAVLRREKVAIFGDYDVDGAASAALLAGALRDLGV 127

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA+L++TVDCG+  +  L  A   G+DVIV+DH
Sbjct: 128 PYRLHIPDRITEGYGPNVEAVRVLAGEGARLLVTVDCGTAGHAPLAEAARLGLDVIVLDH 187

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241
           H       PA A+VNPNRLDDLSG GHLCAAGVVFL LV + R LR+D       DL++ 
Sbjct: 188 HGAPESLPPARAVVNPNRLDDLSGLGHLCAAGVVFLTLVALKRRLRRDGV--DLPDLMTG 245

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVALATV DVVPL GLNRA+V +GL V R +G  GL AL++   +  P  A +LG+++
Sbjct: 246 LDLVALATVADVVPLAGLNRAFVRQGLAVMRGRGRLGLAALLDAAGLGEPPQAWHLGFLV 305

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG++ LG+RLL+ +D  E   +A +LD LN+ R+ +E+A + +AEA    +
Sbjct: 306 GPRINAGGRIGDATLGARLLLCEDPIEAAGIAAQLDQLNRERQAIEAAAVAEAEALTALR 365

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
            +     +VIV     WHPG+VGL+AARLKE+FGRP+FA +  +DG   GSGRSI G D+
Sbjct: 366 LEREPDQAVIVTGSPDWHPGVVGLIAARLKERFGRPAFAFALRQDGSATGSGRSIVGADL 425

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G+ V  AVE G+  KGGGHAMAAG+T+  V+  R  D   +     V          IDG
Sbjct: 426 GRAVRRAVECGLAAKGGGHAMAAGVTIAAVDLDRFRDALARDLAASVGEARAAEALLIDG 485

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L+A  V   LI  LE AGP+G G P PVFA   H++   R+V   H+++    +D  T+
Sbjct: 486 TLSAGGVQPDLIAALERAGPFGQGAPEPVFALARHRVADARMVGTGHVKVQLRGRDGVTV 545

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            AIAFR    PLG FL++  G+ +H  G L  + WRGS+R QLR+ DA+   
Sbjct: 546 PAIAFRAAEGPLGRFLLRGIGRDIHAAGTLARDRWRGSERVQLRLCDAAEAT 597


>gi|220932058|ref|YP_002508966.1| single-stranded-DNA-specific exonuclease RecJ [Halothermothrix
           orenii H 168]
 gi|219993368|gb|ACL69971.1| single-stranded-DNA-specific exonuclease RecJ [Halothermothrix
           orenii H 168]
          Length = 814

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 183/587 (31%), Positives = 317/587 (54%), Gaps = 29/587 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W  +  +   +        + +  ++  +L +R ++  D    FL+  I+ L   P +
Sbjct: 3   KKWQFIKQKLDGSL-------NDLEPVLQSILYSRGITDRDEINRFLSCRIQDLH-SPFL 54

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVD 133
           + D  KA  RI+ AI + EKI+++GDYDVDG  S AL+  +         + Y+P+R+ +
Sbjct: 55  MKDMGKAVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKE 114

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N   ++K IN+   L++TVDCG +  + ++YAT +G++VIV DHHQ   +  PA A
Sbjct: 115 GYGLNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIA 174

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P+R DD     +L   GV F +   + + ++       +  LL L+D+V+L ++ D+
Sbjct: 175 VLDPHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEI---SDFLLRLIDIVSLGSIADI 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VPL+G NR  V +GL       N GL+ L++++++    + A ++GY++ P +NA GR+ 
Sbjct: 232 VPLLGENRIIVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRME 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG  LL +D   + + +A +L  LN++R+  E  + E A   +  +  D+ +   IV
Sbjct: 292 DPSLGIELLTTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMI-EKTVDLNKDKGIV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A+RL EK+ RP   IS  EDG G GS RSIEG +I K + F     
Sbjct: 351 LASPDWHHGVIGIVASRLVEKYYRPVIMIS-LEDGIGKGSCRSIEGLNIYKALDFC--SS 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L+  GGH  AAGL + + +  +  D F  +  +++      PV K+D +L    +N+  
Sbjct: 408 YLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNF 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              L+   PYG GNP P F   N +   +R V     HL+ T +      L+ I F    
Sbjct: 468 YKTLKQLEPYGVGNPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKG----LKGIGF---- 519

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
              G+ L++ + K++ +  +L +N W G++  +L++LD +  E  ++
Sbjct: 520 -DFGDKLIEFKNKKVDLAFYLTLNTWNGAEEVELQLLDVNVKESINY 565


>gi|194334478|ref|YP_002016338.1| single-stranded-DNA-specific exonuclease RecJ [Prosthecochloris
           aestuarii DSM 271]
 gi|194312296|gb|ACF46691.1| single-stranded-DNA-specific exonuclease RecJ [Prosthecochloris
           aestuarii DSM 271]
          Length = 570

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/583 (28%), Positives = 272/583 (46%), Gaps = 19/583 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           FRW              ++++  +   +AR L NR +   D AK F  P    ++P P +
Sbjct: 4   FRWTIR--DSDDEACERLSREINVSLPIARALCNRGICDFDQAKAFFRPDPA-VIPSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D   A  R+++A+   E I+++GDYDVDG    AL+M FL       + YI DR  +G
Sbjct: 61  FRDMQCAVERVMKALEQGEHILLYGDYDVDGTTGTALLMLFLRSQGAEVSYYINDRFTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + +   +  GA L+ITVDCG  +   ++    QGIDVIV DHH+  +    A A+
Sbjct: 121 YGLSDAGVGCAVERGAGLVITVDCGIRAVKEVEAFNVQGIDVIVCDHHEPGTLPA-ASAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV F ++  +   + +D       +    LDLVA+AT+ D+V
Sbjct: 180 LNPKVPGCSYPFRELCGCGVAFKLVQALIEQMGRD-----AAEWEQYLDLVAVATLADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L   NR Y+ +GL   +      ++ LI  +      ++A  + + I P INA GR+  
Sbjct: 235 ALKEENRIYMHQGLQRLKAAPRMSIQELISCMGARLESLSAGVIAFGIAPRINAAGRMQN 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +      L+SD   E    A +LD LN  RR +++ +L+ AE  V          S +V+
Sbjct: 295 AATAVEWLMSDSRDECRKHAEELDRLNGERREIDAGILKLAEGMVNGYFASY--CSSLVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL+EK+  P+  +   + G   GS RS+ G ++ +++      G+
Sbjct: 353 YHEDWHLGVLGIVASRLQEKYYLPTVVLGGSD-GLIKGSVRSVGGLNVMEVLQEC--SGL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGH  AAG+T++  N       F   +   +          ID  L    V+   I
Sbjct: 410 LEKFGGHEAAAGVTLKPENLQLFRKRFDALSAERLSYEQRQKEVIIDTQLQLDEVSPKFI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++L    P+G GNP PVF     ++    R++   H++ + ++        I F      
Sbjct: 470 NVLSQFAPFGFGNPEPVFLSRGLRISGYPRLLKGRHVKFSVKTGSGRIFDVIGFSRED-- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           +   L +   +   +   L  N W G K  Q+++ D +  +  
Sbjct: 528 IYRALERGSKQVFSMVYTLEENEWNGRKTIQMKLKDMAVEKSQ 570


>gi|15613803|ref|NP_242106.1| single-strand DNA-specific exonuclease [Bacillus halodurans C-125]
 gi|10173856|dbj|BAB04959.1| single-strand DNA-specific exonuclease [Bacillus halodurans C-125]
          Length = 784

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 186/592 (31%), Positives = 291/592 (49%), Gaps = 27/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S  RW     ++   R   + +   I  IVA++LV R +   + AK FL      L+ DP
Sbjct: 4   SKARWNV--AEQLDERIRPLLEHLHIEPIVAKLLVIRGIDTVEEAKTFLQVD-ESLLHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L   ++   R+ QAI   EKI+I+GDYD DG +S ++M+  L       + YIP+R  
Sbjct: 61  YELDGMEQVVARVRQAIKAEEKILIYGDYDADGVSSTSVMVYTLRELGAQFDYYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN + +     EG QL+ITVD G  +    + A   G+D IV DHH+       A 
Sbjct: 121 EGYGPNENALRWAKEEGYQLVITVDTGIAAVHEAEVAKEIGLDFIVTDHHEPPPVLPDAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP +        HL   GV F +   +   +              LLDLVA+ T+ D
Sbjct: 181 AIINPKKPGCSYPCKHLAGVGVAFKLAHALLERVP-----------YDLLDLVAIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VPL   NR    +GL        PG++AL +        + AE++G+ IGP INA GR+
Sbjct: 230 LVPLTDENRWLAKEGLKAIETTTKPGIQALKKVCGFHEDNVQAEHVGFGIGPRINAAGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LLI+D  +  + LA ++D+LN+ R+ + S +  +A   V  +    +   V+
Sbjct: 290 DSAKPAVELLITDQVETGQQLAEQIDLLNKERQAIVSEIAAEAINLV-KELYPPEDNHVL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G  W+PG++G++A+RL E F RP+  +S++E+ G   GS RSIEGFD+      +  
Sbjct: 349 VVGGHGWNPGVIGIVASRLVETFYRPTIVLSYDEEKGIAKGSARSIEGFDM--FHELSKN 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L   GGH MAAGLT+   +   L       A   +      P+ +ID   +   +++
Sbjct: 407 RELLPHFGGHPMAAGLTMSLQDVDELRKRMNAQAREALRPEDFIPITRIDVQASVDEISV 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           + I+ + +  PYG GNP P     + K++ +R +     HL++TF+ Q+  TL  + F +
Sbjct: 467 STIEKMNALAPYGVGNPEPKVMLTDVKIEGMRKIGAASNHLKVTFQ-QNGTTLDGVGFHL 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S   R+   G L +N W G  + QL + D +  E   F  +
Sbjct: 526 GHLS----DEISPTARVSAVGVLSINEWNGHVKPQLMIEDLAVNEWQLFDWR 573


>gi|260887826|ref|ZP_05899089.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           sputigena ATCC 35185]
 gi|330838607|ref|YP_004413187.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           sputigena ATCC 35185]
 gi|260862432|gb|EEX76932.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           sputigena ATCC 35185]
 gi|329746371|gb|AEB99727.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           sputigena ATCC 35185]
          Length = 656

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 180/584 (30%), Positives = 311/584 (53%), Gaps = 26/584 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
             W  L   +   RA+  +Q+       A +L++R ++  + A+ FL+P  +    DP +
Sbjct: 3   KEWSLLP--DTSARAVEFSQRIGTTPFTAALLLHRGITSDEEARAFLHPE-KQPFHDPFL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA  RI QAI   E+I+++GDYDVDG  + +L+ R L      A+ +IP R  DG
Sbjct: 60  MRDMEKAVSRIEQAIEAQERIVVYGDYDVDGITATSLLCRNLRQLGAAADYFIPHRQKDG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +++ I  GA+LI+TVDCG ++ +    A ++ +D+I+ DHH    E   A A+
Sbjct: 120 YGLHKETLDEIIAGGARLIVTVDCGISAVEEAAAAKDK-VDLIITDHHLPGKELPKALAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P+R D      ++   GV F +   +++ +R              LD+VAL TV DVV
Sbjct: 179 IDPHRADCSYPDKNIAGVGVAFKLCQALWQKMRGKAFTGD-------LDIVALGTVADVV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL+G NR  V +GL V ++   PG++AL+         ITA ++G+++ P +NA GR+  
Sbjct: 232 PLLGENRKIVQQGLRVLKKSKRPGIQALLAVTELQEKEITAGHIGFVLAPRLNAAGRLAS 291

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G  LL+++D +E + +A +LD  N+ R+ +E  +L+ AE ++  +  D+++A V+V+
Sbjct: 292 ALRGVELLLTEDGEEAQAIAEELDAANRERQAVEQEILQVAEKQI--EEIDVKRAHVLVL 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WHPG++G++A+R+ E++ RP+  I+ EEDG G GS RSI GF + + +S   E   
Sbjct: 350 HGEGWHPGVIGIVASRIVERYYRPTVIIA-EEDGIGKGSCRSIRGFHMFEALSACGEH-- 406

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGHA AAGL++   +     +  + +A  ++      P+  I+  L    +   L+
Sbjct: 407 LLGFGGHAQAAGLSLRSADVASFREAMEAYAAKVLTEEDFVPILDIELELAPEKITEQLM 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             ++   PYG GNP P+F+    +    R +     HL+   +  D  ++  +A+     
Sbjct: 467 TEIKLLEPYGMGNPKPLFSTHGVRGSYARQIGKEGQHLKFELDGLD-ASIDVLAWG---- 521

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             GE       +R+ +      + WR  +  QL + D  P    
Sbjct: 522 -KGEEAPLVNRERIDIAYFPEYHVWREKRSLQLMLEDFRPARAE 564


>gi|317128218|ref|YP_004094500.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473166|gb|ADU29769.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           cellulosilyticus DSM 2522]
          Length = 781

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 192/589 (32%), Positives = 290/589 (49%), Gaps = 29/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW      E   + + +  +  I  I AR LV R       A+ FL+     ++ DP +L
Sbjct: 7   RWKITEANEN--QVMELANQLNISMIAARFLVQRGYDDVHKAQSFLHMD-ASMIHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA +RI  AI  +E I++FGDYD DG  S +LM   L     N   Y+P+R  +GY
Sbjct: 64  KDMEKAVKRIHTAIKENENILVFGDYDADGVTSTSLMYLTLKQLGANVGFYVPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN         E   LIITVD G  +    + A   G+D+I+ DHH+       AYA++
Sbjct: 124 GPNEQAFRHAKEENVSLIITVDTGIAANHEAEVAKELGVDLIITDHHEPPPTIPDAYAVI 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP + D      +L   GV F V   +   +               +DLVA+ ++ D+VP
Sbjct: 184 NPKQDDCFYPNKNLAGVGVAFKVAHALLNRVP-----------TEYIDLVAIGSIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           LI  NR    +G+    R+  PGLKAL+E  NI+   +  E++G+MIGP +NA GR+  +
Sbjct: 233 LIDENRFLAAEGIHSLTREQRPGLKALMEHCNINPLELNEEHIGFMIGPRLNAAGRLDSA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +   +LL+S+D  E   LA+ +D LN+ R+ + + M ++AE +V          SV++V 
Sbjct: 293 DPAIQLLLSEDDIEAYELAIMIDDLNKERQTIVNEMAKEAEEQV---LAKDTVPSVLIVG 349

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
              W+ G++G++A+RL EKF RP+  +S +E  G   GS RSIEGFD+ + +S   E   
Sbjct: 350 QAGWNAGVIGIVASRLVEKFYRPTIVLSLDESTGLAKGSARSIEGFDLFQALSQCREW-- 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAGLT++  N   L +     A   V          +D  +  S V    I
Sbjct: 408 LPHFGGHPMAAGLTMKIENINLLQEKMCNIAETTVAEENWIKSLAVDLPVKVSEVTTEAI 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             L+   P+G GNP P     N +L   + +     HL+++ + ++S  L  IAFR+   
Sbjct: 468 THLQEMAPFGVGNPAPKALIENVELAMTKKIGAKEDHLKLSLKDEES-VLDGIAFRMGNI 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G L +N W G  + Q+ + D    E   F  +
Sbjct: 527 ----ADELSPIAKLSVVGQLSINEWNGHVKPQMIIEDIKVDEWQLFDLR 571


>gi|86137916|ref|ZP_01056492.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           MED193]
 gi|85825508|gb|EAQ45707.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           MED193]
          Length = 581

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 226/599 (37%), Positives = 330/599 (55%), Gaps = 31/599 (5%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLGVE S++G RW+ L        A  + Q+  +P  + +VL  R V    A+ FL P 
Sbjct: 2   SFLGVENSLTGRRWLGLGID-LERAAEHMAQQTGLPSPLCQVLARRGVPAHEAQGFLTPH 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++ L+PDP  + D + AA R ++A+   ++I IF DYDVDG +S AL++ +L    + A 
Sbjct: 61  LKDLLPDPRRMKDMELAAARFLEAVQTRQRIAIFADYDVDGGSSAALLLVWLRAMGLQAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M         LI+ VDCG+ S+  +  A  +G DV+V+DHH  
Sbjct: 121 LYIPDRIDEGYGPNEEAMAGLAQ-AHDLIVCVDCGTLSHGPI--AAAKGADVVVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A+VNPNR D+    G+ CAAGVVFL+LV + R  R+   +    DL+ LLDL
Sbjct: 178 GETLPECVAVVNPNRQDEDGELGYFCAAGVVFLMLVEVRRQAREKG-LSTGPDLMGLLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G NRA V +GL V   +  PGL AL +   + +  +  +LG+++GP 
Sbjct: 237 VALATVADVAPLVGANRALVRQGLKVLGARQRPGLVALADVSRMDAAPSTYHLGFLLGPR 296

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG+++LG+RLL +++  E   LA +LD LN  RR +E+A+   A  +   +  D
Sbjct: 297 VNAGGRIGKADLGARLLATENPHEAAALAERLDQLNTERRDIENAVRAAAMEQAEARGFD 356

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              A ++   G+ WHPG+VG++A+RLKE  GRP+  I     G+G GSGRS+ G D+G  
Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAVVIGLHN-GEGKGSGRSVSGIDLGIA 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTV         +             +     K+DG+L 
Sbjct: 413 IQRTAAEGLLIKGGGHKMAAGLTVAEDKLEAAMERLGDLLAKQGAGSLGPADLKLDGMLM 472

Query: 485 ASAVNIALIDMLES-----------AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
             A NI LI+ +E                        ++FP+  ++  + +   HL+++ 
Sbjct: 473 PGAANIDLIEQIEQAGPFGAGAAAP-----------RYSFPDLAIRFAKRIGETHLKLSL 521

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  L AI F  + T LG  L++  G R H  G L +N W G +  QLR+ DA+  
Sbjct: 522 TDGVGGNLDAICFGAFDTALGPRLLEHGGARFHFAGRLEINSWGGRQSPQLRLEDAAEA 580


>gi|86131037|ref|ZP_01049636.1| single-stranded-DNA-specific exonuclease RecJ [Dokdonia donghaensis
           MED134]
 gi|85818448|gb|EAQ39608.1| single-stranded-DNA-specific exonuclease RecJ [Dokdonia donghaensis
           MED134]
          Length = 563

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 167/579 (28%), Positives = 275/579 (47%), Gaps = 22/579 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +   + Q+  +   +A +L+ R++   + AK+F  PS+  L  DP ++
Sbjct: 2   RWTLKPKPE-AQKVAKLAQELGVEAPIATLLIQRDIDTYEKAKNFFRPSLDALH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI QAI   E I++FGDYDVDG  SVALM  +L         YIPDR  +GY
Sbjct: 60  KDMDKAVARIEQAIAQGENILVFGDYDVDGTTSVALMSSYLDTIHPQVATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + + + YA  +GID I+ DHH+   +   A A++
Sbjct: 120 GVSYMGIDFAADNDMTLIIALDCGVKAIEKVAYAKEKGIDFIICDHHRPGDQLPDAVAIL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  I    +Q+       +LL  LDLVA A   D+VP
Sbjct: 180 DPKREDCPYPYDELCGCGVGFKLISAIALSRKQN-----FEELLPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V  +    G +A+I++V     +T  ++ ++IGP INA GR+   N
Sbjct: 235 ITGENRILAYHGLNVINQAPRAGFEAIIKQVK-KETLTITDVVFIIGPRINAAGRMVHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   D       A +++  N +R+  + ++ +QA  +++   ++  + +V  V  
Sbjct: 294 HAVTLLRETDLATATKFASEIEQYNSDRKEADKSITQQALDQIIENQEEGNKTTV--VFQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 EDWHKGVIGIVASRLIETYYRPTLVFTRSGD-KYAASARSVKGFDVYNALHECAEH--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +      F++         +  P   ID  +N + +      +
Sbjct: 409 QFGGHKYAAGLTLLPEQYEAFKAKFEEVVAASCDERLLVPEISIDSEINLADITPKFHRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQ-MTFESQDSETLQAIAFRVYGT 551
           ++   P+G  N +P F   N       + V     HL+    ++     +  I F +   
Sbjct: 469 IKQFAPFGPRNMSPTFMTKNLTDTGYGKKVGADQTHLKAAVVQNSRGSQIGCIGFNLGD- 527

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              ++ + +  K       +  N W G+   QLR+ D  
Sbjct: 528 ---KYDLITNKKPFMAAYAIDENEWNGNVSLQLRLKDIK 563


>gi|332519367|ref|ZP_08395834.1| single-stranded-DNA-specific exonuclease RecJ [Lacinutrix algicola
           5H-3-7-4]
 gi|332045215|gb|EGI81408.1| single-stranded-DNA-specific exonuclease RecJ [Lacinutrix algicola
           5H-3-7-4]
          Length = 563

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/578 (28%), Positives = 274/578 (47%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW     +  +     +     + + VA +L  R + + + AKDF  P+++ L  DP ++
Sbjct: 2   RWTLKP-KPNLETVQFLQHALQVEEPVATLLAQRGIETYEQAKDFFRPNLKHLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  KA +RI  AI N+E I+++GDYDVDG  +V+LM  +L     N   YIPDR  +GY
Sbjct: 60  KDMLKAVKRIEVAIANNENILVYGDYDVDGTTAVSLMSSYLKSEYPNVATYIPDRYGEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YA  + ID I+ DHH+   +   A A++
Sbjct: 120 GISFQGIDFAEDNNFTLIIALDCGIKAIDKIAYAEEKNIDFIICDHHRPGDKVPNAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P + D       LC  GV F ++  +     +        DL   LDLVA A   D+VP
Sbjct: 180 DPKQSDCNYPYKELCGCGVGFKLIQALASKKGK-----TVEDLQEYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G KA+I ++     +T  ++ ++I P INA GR+    
Sbjct: 235 ITGENRILAYFGLQVINSAPRAGFKAIINQIK-KETLTITDVVFVIAPRINAAGRMKHGQ 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   + Q  ++ A +++  N +RR  +  +  +A  ++  + ++ +     VV  
Sbjct: 294 YAVDLLTETNVQTAQVYAQEIENFNTDRREADKQITIEALQQI--ENNNEKDRLTSVVYQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++G++A+RL E + RP+   +     K   S RS++GFD+   +    E   + 
Sbjct: 352 QDWHKGVIGIVASRLIETYYRPTLVFTKSG-NKLAASARSVKGFDVYNALEACAEH--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT++  N+      F++     +   + TP   ID  +  + ++     +
Sbjct: 409 QFGGHKYAAGLTLKEENYEAFKQKFEEVVQATIDKKLLTPEITIDRQIELNDISDKFYRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552
           L    P+G GN +PVF   N +     + V     HL++T +   S  +  I F +    
Sbjct: 469 LSQFAPFGPGNMSPVFMTNNLQDTGYGKCVGEDDKHLRITVKQPGSNAIVCIGFGLGD-- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  +    KR      +  N W+G+   QL++ D  
Sbjct: 527 --KLNLIKNNKRFKAVYSIDENEWQGNVSLQLKLRDLK 562


>gi|288555360|ref|YP_003427295.1| single-strand DNA-specific exonuclease [Bacillus pseudofirmus OF4]
 gi|288546520|gb|ADC50403.1| single-strand DNA-specific exonuclease [Bacillus pseudofirmus OF4]
          Length = 789

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 186/589 (31%), Positives = 299/589 (50%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +A  +  +  + ++VA++LVNR + + + A+ FL     +   DP +L
Sbjct: 7   RWKIQEQDEH--KAGRLVSELGVDELVAQLLVNRGIETPEAARTFLYTK-EMTYHDPYLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              DKA  RI +AI N EKI+IFGDYD DG +S ++M+  L+      + YIP+R  +GY
Sbjct: 64  KGMDKAVARIKEAIANQEKILIFGDYDADGVSSTSVMIYTLNELGAVFDYYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN   + +   EG  L++TVD G ++      A    +D IV DHH+       AYA+V
Sbjct: 124 GPNEPALRRAKEEGYSLVVTVDTGISAVHEANVAKEIDLDFIVTDHHEAPPVLPEAYAIV 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP + D       L   GV F V   +   + +            LLD+V + T+ D+VP
Sbjct: 184 NPKQPDCTYPFKGLAGVGVAFKVSQALLGRIPK-----------ELLDIVVIGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314
           LI  NR    +GL        PGL+AL++   I    +T +++G+ IGP INA GR+  +
Sbjct: 233 LIDENRLMAKEGLKALESTSKPGLRALMKVCGIGQDALTGDHVGFGIGPRINAAGRLDSA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    L+I++DS E E LA ++D LN+ R+ + + + E+A   V ++    +   V+++ 
Sbjct: 293 DPAVELMITNDSNEAEHLAAEIDSLNKQRQSIVNTITEEAVEVVESKYPPDEND-VLIIA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           G  W+ G++G++A+RL E+F RP+  +S +E+ G   GS RSIEGFD+      +    I
Sbjct: 352 GAGWNAGVIGIVASRLVERFYRPTIVLSIDEEKGLAKGSARSIEGFDM--FKELSKSRDI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAGLT++  +   L +     A  ++      P+ KID       +++ +I
Sbjct: 410 LPHFGGHPMAAGLTMKEPDLNLLRERLNNQAKEVLTEEDFKPLTKIDLSTTVDRISLTVI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             LE+  P+G  NP P        +  +R +     HL+M+F  Q+  +L  I F +   
Sbjct: 470 KQLEALAPFGVNNPTPKVMLEGVHIDQMRRIGSESNHLKMSFV-QNGASLDGIGFHLGHL 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S+  ++   G L +N W G  + Q+ + D +  E   F  +
Sbjct: 529 H----DEISQTAKLSAIGTLSINEWNGHVKPQMMLEDLAVKEWQLFDWR 573


>gi|302391501|ref|YP_003827321.1| single-stranded-DNA-specific exonuclease RecJ [Acetohalobium
           arabaticum DSM 5501]
 gi|302203578|gb|ADL12256.1| single-stranded-DNA-specific exonuclease RecJ [Acetohalobium
           arabaticum DSM 5501]
          Length = 1210

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 186/595 (31%), Positives = 310/595 (52%), Gaps = 21/595 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           I    W  L           ++    I  ++A +L +R ++     ++FL   +  L   
Sbjct: 2   ILDREWKLL--NRSTEEEPNLSDSLNISSVLAEILSSRGLNSKQKVENFLEVELDGLH-S 58

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L   ++A  RI  A+ + E I I+GDYDVDG  S  L++ +  H  V    +IP+R+
Sbjct: 59  PFLLEGIEQAVDRISTAMESQEIIGIYGDYDVDGITSTGLLINYFQHLGVEPKYHIPNRL 118

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N   +E     G +L+ITVDCG + Y  ++YA   GIDVI+ DHH+V +   PA
Sbjct: 119 EEGYGLNKDAIESLAQSGVELLITVDCGISDYQEVKYANQLGIDVIITDHHEVPARIPPA 178

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++N  + +       LC AGV + +++ +     +D +V         LDL+A+  V 
Sbjct: 179 EAVINAKQSNCNYPFSQLCGAGVAYKLILALA---DKDQQVNQKEIKEYYLDLLAMGIVA 235

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           D+VPL+  NR  V  GL + +   N GL ALIE V+   + I   ++GY++ P +NA GR
Sbjct: 236 DIVPLVDENRIMVKYGLELLQNPNNLGLSALIEAVDLTETEINTGHIGYILAPRLNAAGR 295

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           IG  +L   LLI+DD  +   +A +L+ +N  RR +E+ + ++AE  V  +  D++Q   
Sbjct: 296 IGNPDLALELLITDDPSQAADIAAELEEINHRRRDIEADIRQEAELMV--EGMDLEQTKA 353

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +V+  + WH G+VG++A+ ++EK+ RP+  I+ E+DG G GS RSI+GF+I + V     
Sbjct: 354 LVLASENWHSGVVGIVASDIQEKYYRPTIMIAIEDDGIGRGSARSIKGFNIYQAVK--NS 411

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E +L K GGH  AAGL++ + +  +  D   ++A + +     TP  K+D  +  S ++ 
Sbjct: 412 EDLLPKFGGHEQAAGLSIAKEDIAQFRDEINQYADDRLSDKDLTPRLKLDCEVELSELSK 471

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            L+  ++   P+G GNP P  A     +     V     HL++    +   T++ I F +
Sbjct: 472 ELVQEIDYLAPFGFGNPRPKLAVREVTVADFATVGSNGEHLKLAVTDEAGTTVECIGFNM 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE----GHHFAK 599
            G       + S+ + + +   + +N W+G    QL++ D +  E       FAK
Sbjct: 532 AGF---RQKLISQQEEIDLACTVEINNWQGKSELQLKLKDINFPEVSFIDQLFAK 583


>gi|293394607|ref|ZP_06638901.1| recombination protein J [Serratia odorifera DSM 4582]
 gi|291422916|gb|EFE96151.1| recombination protein J [Serratia odorifera DSM 4582]
          Length = 577

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/565 (32%), Positives = 277/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+   R V  +     L  S++ ++P   +L   D A   + QA+ +  +IMI
Sbjct: 21  NLHPLLRRLYAQRGVQGEQE---LERSVKGMLP-WQLLDGIDAAVDILQQALADGRRIMI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N     +P+R  DGYG +P ++E+    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALTVLALRSMGGNNVQYLVPNRFEDGYGLSPEVVEQAATRGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A  +G+ V+V DHH        A A+VNPN  +       L   GV F
Sbjct: 137 DNGISSHAGVEVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLRECAFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMLALRARLRDSGWFEQRAMAMPNLAELLDLVALGTVADVVPLDANNRILVYQGLNRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +  
Sbjct: 257 AGKCRPGVRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           MLA  LD LNQ RR +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 MLANDLDALNQTRREIEQGMQVEALQLCDQLERTSTTLPYGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +   V   DG L    + +   ++L   GP+G   P
Sbjct: 437 LEEARFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELTLETAELLREGGPWGQAFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + 
Sbjct: 497 EPTFDGR-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG++  QL +    P
Sbjct: 552 LAYKLDVNEFRGNRSVQLLIQHIWP 576


>gi|56421115|ref|YP_148433.1| single-strand DNA-specific exonuclease [Geobacillus kaustophilus
           HTA426]
 gi|56380957|dbj|BAD76865.1| single-strand DNA-specific exonuclease [Geobacillus kaustophilus
           HTA426]
          Length = 773

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 288/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E       + ++  +  ++AR+LV R V +   A  FLNP +R    DP +L
Sbjct: 7   RWEVERLDE--QAVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNP-LRQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A +R+ +AI   E+++++GDYD DG  S ++M+  L     +   YIP+R  +GY
Sbjct: 64  DGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +        G  +I+TVD G  +   +  A   G+DVIV DHH+       A+A++
Sbjct: 124 GPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGMDVIVTDHHEPGPVLPEAHAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLDLVA+ T+ D+VP
Sbjct: 184 HPKQPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L+G NR +V  GL   R     GL+AL  +  I  + I  + +G++I P +NA GR+G +
Sbjct: 233 LVGENRLFVAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL++DD  E   LA ++D LN+ R+ + + + E+A   V  Q    +   V+VV 
Sbjct: 293 DPAVALLMTDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHR-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           G+ W+ G+VG++A++L E+F RP+  +S   E G   GS RSI GFD+    S +    +
Sbjct: 352 GEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDL--FASLSQCRDL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A   +     TP   ID   + + + ++  
Sbjct: 410 LPHFGGHPMAAGMTLSLDDVEELRQRLNDIAAETLSEDDFTPPTFIDASCSIAELTLSAA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             LE   P+G GNP P+       ++++R V     H++  F SQD   + AI F +   
Sbjct: 470 RSLERFAPFGVGNPRPLVLIEGASVETMRRVGANGAHMKAVF-SQDGAAIDAIGFGLG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   R+   G L VN W G  + QL + D +  +   F  +
Sbjct: 527 --PLCEEIAPDARISAVGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVR 573


>gi|163786824|ref|ZP_02181272.1| single-strand DNA specific exonuclease [Flavobacteriales bacterium
           ALC-1]
 gi|159878684|gb|EDP72740.1| single-strand DNA specific exonuclease [Flavobacteriales bacterium
           ALC-1]
          Length = 563

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 174/578 (30%), Positives = 279/578 (48%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW      E + +   + +   + DIVA +L+ R +   + AK F  PS   L  DP ++
Sbjct: 2   RWTLKPKPEAL-KVEVLKKALQVDDIVATLLLQRGLDTYETAKTFFRPSFEDLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI +AI + E I+++GDYDVDG  SVALM  +L     +   YIPDR  +GY
Sbjct: 60  KDMDSAVTRIEKAIKDGENILVYGDYDVDGTTSVALMSSYLKTRIDSVATYIPDRYDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   + G  LII +DCG  + D + YA  +GID I+ DHH+   +   A A++
Sbjct: 120 GVSYKGIDFADDNGFSLIIALDCGVKAIDKVAYAKEKGIDFIICDHHRPGDQLPDAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +       N+     DL+  LDLVA A   D+VP
Sbjct: 180 DPKREDCEYPFKELCGCGVGFKLITALAS-----NQGQTVQDLVEYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           ++  NRA    GL V   +  PG+KA+I  V     +T  ++ ++I P INA GR+   N
Sbjct: 235 IVEENRALAYFGLQVINTKPRPGMKAIIAEVKKDE-LTITDVVFIIAPRINAAGRMKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   D       A+ +D  N +RR  +  +  +A  ++  + ++ Q+    VV  
Sbjct: 294 HAVTLLTETDFNLAAEYAVDIDQFNTDRRETDKRITAEALIQI--EENNEQEGFTTVVYK 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 EDWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEACSEY--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+   N+      F+      +   +  P  K+D  +  S +N  L+ +
Sbjct: 409 QFGGHKYAAGLTLLPENYEAFKAKFESVVKETIDPKLLIPEIKVDLEIELSQINDKLMRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552
           L+   P+G GN +P F   N K     + V     H++ T     ++ +  I F +    
Sbjct: 469 LKQFAPFGPGNMSPTFMSQNIKDTGYGKCVGEDDKHIRFTATQSFNDKIVCIGFGLGD-- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  +    +       +  N+W G+   QL++ D  
Sbjct: 527 --KLDIIKNKRPFSAAYSIDENHWNGNISLQLKLKDIK 562


>gi|193215962|ref|YP_001997161.1| single-stranded-DNA-specific exonuclease RecJ [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089439|gb|ACF14714.1| single-stranded-DNA-specific exonuclease RecJ [Chloroherpeton
           thalassium ATCC 35110]
          Length = 567

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/577 (28%), Positives = 281/577 (48%), Gaps = 20/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           F W     +       A+++   +   +A  L+ R VS    AK F  P++ +L   P +
Sbjct: 4   FNWTLYRPEA--ASVKALSESINVSAPIATALLGRGVSNFQEAKAFFRPNLDMLH-SPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA+ R++QA+ N EKI+I+GDYDVDG    A+++ FL     N   Y+ DR  +G
Sbjct: 61  MKDMKKASGRVLQAVRNGEKILIYGDYDVDGTTGTAMLVLFLKKLGANVAYYVNDRHSEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + S + K  +E   L+I+VDCG ++ + +++    GID I+ DHH+  S+   AYA+
Sbjct: 121 YGISSSGIAKAKDEQTDLVISVDCGISAVEPVRFCNEHGIDFIICDHHE-PSDLPDAYAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP   D       LC  GV F ++  +  ++          ++ + LD VALA   D+V
Sbjct: 180 LNPKLPDSGYPYRELCGCGVAFKLIQAVASLVEI-----APAEVYAYLDYVALAIAADIV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  + +GL   + +    L  + +   +  S +++  + + I P INA GR+  
Sbjct: 235 NLTGENRVMMAEGLKTIQCRPRQCLAVMSKVCGLDLSNVSSSQIVFSIAPRINAAGRLNH 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +      +I++D  E   LA +L+ +N+ RR +++   ++AE     +   +  AS IV+
Sbjct: 295 ARQAIEWMIAEDEHEAVALAEELEFVNRERREIDTETFKEAEQLA--EVYALNYASSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             D WH G++G++A+R+ EK+ RP+  ++  + G   GS RS++G ++ + +    E   
Sbjct: 353 YKDSWHVGVIGIVASRILEKYYRPTLILTAAD-GVLKGSARSVQGVNVYEALQACEEF-- 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGH  AAGLT+   N       F +         +  P  K+D  +    +     
Sbjct: 410 LLQFGGHEHAAGLTLAPSNLESFRKAFDRAVEEQFTIEMRVPEIKVDAEVVLEQITPNFF 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            +L    P+G  NP PVF   N KL S  +++   HL+ +           + F +    
Sbjct: 470 KVLSQFAPFGPKNPRPVFLTRNVKLCSLPQLLKEKHLKFSICDALGRRFDVVGFNMPEYF 529

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                +Q+  +R+ +   L  N W      Q+R+ D 
Sbjct: 530 KP---LQTPDRRISLVYSLTENVWNRRTSIQIRLRDL 563


>gi|90580581|ref|ZP_01236386.1| putative single-stranded-DNA-specific exonuclease RecJ [Vibrio
           angustum S14]
 gi|90438239|gb|EAS63425.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium angustum S14]
          Length = 574

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/562 (32%), Positives = 281/562 (50%), Gaps = 20/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP I+ R+  +R +  D     L  S + L+ +   L     A + +V A+  + +I+I 
Sbjct: 19  IPPILQRIYASRGIKND---AELERSAKGLL-NYNQLHGMTSAVQLLVDALSQNTRIIIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ I  GA+LI+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGCKNVDYLVPNRFDDGYGLSPEVVEQAIERGAELIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A  +G+ V+V DHH        A A+VNPN  +       LC  GV F 
Sbjct: 135 NGVSSIAGVAVAKEKGLTVLVTDHHLPGDCLPIADAIVNPNLNECGFPSKALCGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LRQ            +L  LLDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 195 LMLALRAELRQRGWFEQQGIAMPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++ALIE  N     +   +LG+ +GP INA GR+ + + G  LL+ D+ Q    
Sbjct: 255 GKCRPGIQALIEVANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCDNIQSARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390
           +A +LD LNQ R+ +E  M ++A A       + Q     +V     WH G++G+LA+R+
Sbjct: 315 MASELDGLNQTRKEIEQGMKDEALAICERLKFNQQDMPYGLVLFQRDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           K+K+ RP  A +   +G+  GS RSI G  +   +        G+++K GGHAMAAGLT+
Sbjct: 375 KDKYHRPVIAFADAGNGEIKGSCRSIPGLHMRDALDLVDTQNPGMILKFGGHAMAAGLTI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
                      F     N++       V   DG L    +N+ + ++L + GP+G   P 
Sbjct: 435 PEDKLDAFSKAFDAVVRNVLDEEALKGVLMTDGELGCHELNLDVAEILRAGGPWGQQFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   ++V   HL+M  E       + AIAF V      +    +  +++ +
Sbjct: 495 PTFDGT-FRLLHQKLVGGKHLKMMVEPLGGGTVIDAIAFNVDVKRWPD----ASVQQVEL 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589
              L VN +RG++  QL V D 
Sbjct: 550 VYRLDVNEYRGNRSVQLMVEDL 571


>gi|319952857|ref|YP_004164124.1| exonuclease recj [Cellulophaga algicola DSM 14237]
 gi|319421517|gb|ADV48626.1| exonuclease RecJ [Cellulophaga algicola DSM 14237]
          Length = 562

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/578 (27%), Positives = 267/578 (46%), Gaps = 21/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E   +   +     + D+VA++L+ R + + + AK F  P +  L  DP ++
Sbjct: 2   RWTIKAKPEE-EKIKELASALNVEDLVAQLLLQRGISTFEEAKLFFRPQLSDLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI  AI   E I++FGDYDVDG  +VALM  +L     N   YIPDR  +GY
Sbjct: 60  KDMDIAVARIETAINEGENILVFGDYDVDGTTAVALMSSYLLSFYPNVATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YA  +G+D I+ DHH+  +    A A++
Sbjct: 120 GVSYKGIDFAEDNNFSLIIALDCGVKAVDKVAYAKEKGVDFIICDHHRPGATLPDAIAIL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +     +        DL+  LDLVA A   D+VP
Sbjct: 180 DPKRSDCTYPYDELCGCGVGFKLIQALGSRQGE-----TIEDLIPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G KA+I ++   + +T  ++ ++I P INA GR+    
Sbjct: 235 ITGENRVLAYYGLKVINSDPRAGFKAIINQIK-KTILTITDVVFVIAPRINAAGRMVHGQ 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   +  + E  A +++  N +RR ++  + ++A  +++    + ++    VV  
Sbjct: 294 HAVNLLTETNQAQAEKFAGEIEKYNSDRRGLDQEITKEALTQIIEN--EEEEGFTSVVYK 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL E + RP+   +   D K   S RS++GFD+   +        + 
Sbjct: 352 ETWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEGC--ADYIE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +      F+K     +   +  P   +D  +    +   L+ +
Sbjct: 409 QFGGHKYAAGLTLLEEQYQNFKHQFEKVVSETIDPNLLIPEIAVDLRIEIKDITPKLMRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552
           +    P+G  N  PVF   N +     + V     HL+          +  I F +    
Sbjct: 469 INQFEPFGPENMTPVFMAENIQDSGYAKGVGEEGKHLKFAVTQNGYGPIGGIGFSLGD-- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  + +  K       +  N W+G+   QL++ D  
Sbjct: 527 --KLPLLTGRKPFSAVFSIDENEWQGNVSLQLKLRDIK 562


>gi|325860540|ref|ZP_08173644.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola
           CRIS 18C-A]
 gi|327313685|ref|YP_004329122.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola
           F0289]
 gi|325481925|gb|EGC84954.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola
           CRIS 18C-A]
 gi|326945082|gb|AEA20967.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola
           F0289]
          Length = 574

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/585 (27%), Positives = 284/585 (48%), Gaps = 22/585 (3%)

Query: 16  FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W  +    E  + A  + +K  I  I+A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNHTPPTAEQESAAGELGEKLGISPILAALLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+ + E+++++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDAAVDRLNDAMGHKERVLVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  +   + YA  QGID I+ DHH       PA A
Sbjct: 122 GYGVSRKGIDFAKETGVRLIIILDCGIKAVKEIAYAKEQGIDFIICDHHVPDETMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD      LC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDAYPFKDLCGCGVGFKFMQAFAK-----NNNIPFSRLIPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLKA+I+   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  +       A  +D  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKKSVDLLVEREYGMAFRQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  ++    GS RS+ GFD+   V       
Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAVKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAG+T++  +    C  FQ +    +       +  ID V++   +   L
Sbjct: 413 LLLNFGGHTYAAGMTMKWTDVKEFCRRFQTYVEEHIEPEQREAILDIDAVIDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G GNP P+F   +     + +VV     H+++     + +  +  IAF  
Sbjct: 473 HNDLKRFAPFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++     QL++ D  P +
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTD 572


>gi|86134620|ref|ZP_01053202.1| single-stranded-DNA-specific exonuclease  RecJ [Polaribacter sp.
           MED152]
 gi|85821483|gb|EAQ42630.1| single-stranded-DNA-specific exonuclease RecJ [Polaribacter sp.
           MED152]
          Length = 561

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/579 (29%), Positives = 282/579 (48%), Gaps = 24/579 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW          +  ++ ++  +   +AR+L  R++ + + AK F  PS+  +  DP ++
Sbjct: 2   RWTLKPT-PDSEKVKSLAKELQVSPTIARILCQRDINTFNEAKLFFRPSLEDVH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  RI +AI   E I+++GDYDVDG  +V+L+  +L   S N   YIPDR  +GY
Sbjct: 60  KDMDLAVARIDKAIAKQENILVYGDYDVDGTTAVSLVASYLRTLSPNIATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G + + ++   +    LII +DCG  + D + YAT +GID I+ DHH+   E   A A++
Sbjct: 120 GVSYAGIDFAEDNDFALIIALDCGIKAIDKVAYATQKGIDFIICDHHKPGDEIPKAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           N  R D       LC  GV F ++  +    +Q          +  LDLVA A   D+VP
Sbjct: 180 NAKREDCSYPFDELCGCGVGFKLIQALGVSRQQ-----TIEKFVPYLDLVATAIAADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     G+ V       G+KAL+ +      +T  ++ ++I P INA GR+   N
Sbjct: 235 MNGENRVLAYYGIQVINNNPRNGIKALVHQTKKKE-LTITDVVFIIAPRINAAGRMKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   D       A  +++ N +R+ ++  + ++A  +++    + +     VV  
Sbjct: 294 YAVELLTEMDFDSAVQFAADIEIFNADRKDLDKKITDEALIQIIDN--NEEDKFTSVVYQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL EK+ RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 EDWHKGVIGIVASRLIEKYYRPTLVFTKSGD-KLAASARSVKGFDVYNALLACSEF--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+   N+ +  + F++     +   + TP   +D  +  S +   L  +
Sbjct: 409 QFGGHKYAAGLTLLPENYNKFKNKFEEVVSKTIDKKLLTPEITVDAEIELSEITPKLFRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQM-TFESQDSETLQAIAFRVYGT 551
           LE   P+G  N  PVF   + +     + V    +HL++  F+  + +T  AI F     
Sbjct: 469 LEQMAPFGPQNMKPVFKTSSVRDNGYGKKVGADQSHLKLNVFQGDNKQTFGAIGFG---- 524

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            LG+ L +++     +   L  N W G K  QL + D  
Sbjct: 525 -LGDKLEEAQND-FDIVYTLDENIWNGHKSIQLVLKDLK 561


>gi|150390115|ref|YP_001320164.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus
           metalliredigens QYMF]
 gi|149949977|gb|ABR48505.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus
           metalliredigens QYMF]
          Length = 841

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 179/583 (30%), Positives = 297/583 (50%), Gaps = 22/583 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74
             W              ++++  +    A++L NR  +    AK F++ S+  L  DP +
Sbjct: 4   KIWTYK--DYNEIEIKKMSEELGVLPFTAQILTNRKVIDTREAKRFIDSSLEQLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  KA  RI +AI  +EKI I+GDYDVDG +S ++M+++      + + YIPDR+ +G
Sbjct: 61  LKDMKKAVDRIQEAIQKNEKIWIYGDYDVDGVSSTSIMLQYFKTIDFSVDYYIPDRVQEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   + G  LIITVDCG TS++ +  A +  ID+I+ DHH+ +     AYA+
Sbjct: 121 YGINQEAIQLIKSRGGNLIITVDCGITSFEEIALANSLSIDMIITDHHECQGAVPEAYAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       +C  G+   ++  +        K      +   +D+VA+ATV D+V
Sbjct: 181 INPKQHDCSYPFDSICGCGLALKLIQAL------TPKEEFKSTIYLYIDIVAIATVADIV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL+  NR +V  GL       N G++AL+E        + A ++G+ +GP INA GRIG 
Sbjct: 235 PLVDENRIFVKNGLQYMPDTKNLGVQALLEVCKLKDRKLNAGHIGFSLGPRINAAGRIGS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++ G +LL S D  E++ LA  L+  NQNR+ +E  +L++A   + +         V+V+
Sbjct: 295 ADSGVKLLTSSDPAEVQQLAHFLNEENQNRQEIEVKILDEAINMIESSGQ-FNIDKVLVL 353

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+R+ E++ +P   ++  E  K  GS RSI   ++ + ++    + +
Sbjct: 354 AKEGWHHGVIGIVASRIVERYHKPVIILA-IEGDKAKGSARSIPKLNLFEAMNQC--KDL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
            +K GGH  AAGLT++  N            +  +           DG+L+   V  +LI
Sbjct: 411 FLKIGGHEQAAGLTLKSENIEAFRMKINDIVNQTLSPEDFIAQIHCDGLLSLDVVEDSLI 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           D L +  PYG GNP+P F   +  +  IR V     HL++   S+ S+ + AI F     
Sbjct: 471 DELGNLEPYGMGNPSPKFIGYDFTIVDIRAVGVDGKHLKLKLGSK-SKQVDAIGFNFGDY 529

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                    +G ++H+      N +RG K  QL++ D   V+ 
Sbjct: 530 S----DHIEQGDKIHLVYTPEFNEFRGQKNIQLQIKDIKTVKP 568


>gi|297529256|ref|YP_003670531.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           C56-T3]
 gi|297252508|gb|ADI25954.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           C56-T3]
          Length = 788

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 289/589 (49%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E       + ++  +  ++AR+LV R V +   A  FLNP +R    DP +L
Sbjct: 7   RWEVERLDE--QTVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNP-LRQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A +R+ +AI   E+++++GDYD DG  S ++M+  L     +   YIP+R  +GY
Sbjct: 64  DGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +        G  +I+TVD G  +   +  A   G+DVIV DHH+       A+A++
Sbjct: 124 GPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGLDVIVTDHHEPGPVLPEAHAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLDLVA+ T+ D+VP
Sbjct: 184 HPKQPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L+G NR +V  GL   R     GL+AL  +  I+ + I  + +G++I P +NA GR+G +
Sbjct: 233 LVGENRLFVAHGLEALRATERIGLRALFRQCRINAAAINEQTVGFVIAPRLNAAGRLGGA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL++DD  E   LA ++D LN+ R+ + + + E+A   V  Q    +   V+VV 
Sbjct: 293 DPAVALLMTDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHR-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           G+ W+ G+VG++A++L E+F RP+  +S  +E G   GS RSI GFD+    S +    +
Sbjct: 352 GEGWNAGVVGIVASKLVEQFYRPAVVLSIDQEKGIAKGSARSIHGFDL--FASLSQCRDL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A   +     TP   ID   + + + +   
Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLDAA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             LE   P+G GNP P+       ++++R V     H++  F SQD   + AI F +   
Sbjct: 470 RGLERFAPFGVGNPRPLVLIEGASVETMRRVGANGAHMKAVF-SQDGAAIDAIGFGLG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   R+   G L VN W G  + QL + D +  +   F  +
Sbjct: 527 --PLCEEIAPDARISAVGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVR 573


>gi|304384433|ref|ZP_07366838.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella marshii
           DSM 16973]
 gi|304334485|gb|EFM00773.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella marshii
           DSM 16973]
          Length = 582

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/588 (28%), Positives = 280/588 (47%), Gaps = 22/588 (3%)

Query: 15  GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
            F+W       E    A  + +K  +  ++A +L++R ++ +  AK +  P +  L+ +P
Sbjct: 2   NFKWNYTPPSTEQQQAAKELGEKLGMSPVLASLLIDRGITTESAAKRYFRPQLADLI-NP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D D A  R+  A+   E+IM++GDYDVDG  SVAL+ +FL     N   YIPDR  
Sbjct: 61  FLMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTSVALVYKFLRQFYSNIEYYIPDRYE 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++    +  +LII +DCG  + D + YA  QGID I+ DHH    +  PA 
Sbjct: 121 EGYGVSIKGIDYAKEKEVKLIIILDCGIKAIDEIAYAKEQGIDFIICDHHVPDEQLPPAA 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP R DD     +L   GV F  +    +     N       L+ LLD  A++   D
Sbjct: 181 AILNPKRKDDTYPFKYLSGCGVGFKFMQAFVK-----NNGIPFSRLIPLLDFCAVSIAAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +VP++  NR     GL    +  + GLKA+IE  N++   ++  ++ + IGP INA GR+
Sbjct: 236 IVPVVDENRILAYHGLKQLNQNPSVGLKAIIEICNLNGRNLSMSDIVFKIGPRINASGRM 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+  D  +    A  +D  N+ R+ ++  M E+A   ++ + ++ +  S I
Sbjct: 296 ENGKESVDLLVEKDYTQALQAARHIDEYNEQRKDIDKQMTEEA-NLIVEKLENQKHRSSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + W  G++G++A+RL E + RP+  I+  ++     S RSI GFDI   +      
Sbjct: 355 VLYDENWKKGVIGIVASRLTEIYYRPTIVIT-RDENMATASARSIAGFDIYSAIKSC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAG+T++  +       FQ +    +          ID +L+   +   
Sbjct: 412 DLLQNFGGHTYAAGMTMKWSDVKEFARRFQTYVDEHIRPEQKEATLHIDALLDFKDITKR 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
           L   L+   P+G GNP P+F   N     + +VV     H+++     + +  +  IAF 
Sbjct: 472 LHHDLKRFAPFGPGNPKPLFCTNNVYDFGTSKVVGREQEHIKLELVDAKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
              +           +   +   +  N ++     QL++ D  P E  
Sbjct: 532 QSRS----ARYIKSKRSFDIAYTIEENAFK-RGGLQLQIEDIRPRENE 574


>gi|315499810|ref|YP_004088613.1| single-stranded-DNA-specific exonuclease recj [Asticcacaulis
           excentricus CB 48]
 gi|315417822|gb|ADU14462.1| single-stranded-DNA-specific exonuclease RecJ [Asticcacaulis
           excentricus CB 48]
          Length = 622

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 225/604 (37%), Positives = 333/604 (55%), Gaps = 19/604 (3%)

Query: 5   AFLGVECSISGFRWVSLLGQE--GINRALAITQKHAIP--------DIVARVLVNRNVSI 54
            FLGVE S++G  WV     +  G +    ITQ+ A+         + VAR +  R V+ 
Sbjct: 15  PFLGVETSVTGRLWVDRRDSQRVGAHELRQITQQIALKGPMEEAFVEPVARSIAARGVTA 74

Query: 55  DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR 114
               D+L P+++ L PDP    D  +A   I+ A+   +KI +F DYDVDGA S A ++R
Sbjct: 75  ATLDDYLRPTLKALFPDPDGFMDMPQAVAAILDALQARQKIYVFADYDVDGATSAAQLVR 134

Query: 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI 174
           +  H     ++Y+PDR+++GYGP+    ++   EGA L+ITVDCG++++ AL YA   G+
Sbjct: 135 WFRHMGHELSVYVPDRMLEGYGPSEKAFDRLKAEGADLVITVDCGASAHRALDYAARIGL 194

Query: 175 DVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-- 232
           +V+VIDHH ++ +     A+VNPNR    S QG+L AAGVVF+VL  + R          
Sbjct: 195 EVVVIDHHIMREDPPKCRAVVNPNRPGCTSAQGNLAAAGVVFVVLAALNREAETRGLFAE 254

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP- 291
               DL   LDL AL  +CDV  L G NRA   +GL V  R  NPG++AL++        
Sbjct: 255 RPRPDLTQWLDLAALGAICDVTALSGFNRALASQGLKVMSRLNNPGIRALMQVAGGEPKD 314

Query: 292 ----ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347
               +   + G+++GP INAGGRIG ++LG RLL +DD+ E   LA +LD LN+ RR +E
Sbjct: 315 AATALGVFHSGFVLGPRINAGGRIGRADLGVRLLSTDDADEAAALAQELDELNKTRRDVE 374

Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-D 406
           +A+ EQA A   T+     +  VI+V  + WHPG++G++A RL+E++ +P   I  +   
Sbjct: 375 AAVQEQALALAETKGLVTAEDHVIIVAHEDWHPGVIGIVAGRLRERWHKPVIVIGIDPVT 434

Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466
           G G GSGRS  G ++G+ V+ A E G+L+ GGGHAMAAGL++E      L  F      N
Sbjct: 435 GIGKGSGRSQAGINLGQAVTAAFESGLLLSGGGHAMAAGLSIEAARIPELRTFLNSHIAN 494

Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526
                      +ID  L+A A    L++  E   P+G GNP P+F  P  ++     +  
Sbjct: 495 ATVEADRKDRLEIDAALSAGACTRVLLECFEIMAPFGPGNPEPMFVLPGMRVGYASALKG 554

Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
            H++     +  + L+AIA+R   T +G  L+   G  +HV G L  + + G K  Q  +
Sbjct: 555 GHVRCDLIDEGGKRLKAIAWRAQDTAVGAALLNPVGA-IHVAGRLKPDDYMGRKGVQFEI 613

Query: 587 LDAS 590
            D +
Sbjct: 614 EDIA 617


>gi|134298599|ref|YP_001112095.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum
           reducens MI-1]
 gi|134051299|gb|ABO49270.1| exonuclease RecJ [Desulfotomaculum reducens MI-1]
          Length = 885

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/579 (29%), Positives = 283/579 (48%), Gaps = 21/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W        + + L+   +  I  I A++L+NR + ++D A+ FL   +   M  P +
Sbjct: 5   KKWRVKAPNPALQQILSF--ELGISKIFAQLLINRGIYTVDQARAFLGSELDK-MFSPWL 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI+ A    E+I+++GDYDVDG     +++  L      A+ +IP R+ +G
Sbjct: 62  MQDMKKAVERILGARDKGEQILVYGDYDVDGITGTTVLVLALRRLGCKADYFIPHRLEEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E+ +  G  L++TVDCG +  + ++ A   G++V++ DHH+   +   A A+
Sbjct: 122 YGLNKVALERAVERGVSLVVTVDCGISGAEEVEVAKALGLEVVITDHHEPPVQLPAAVAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R         L   GV   ++  ++       +          LDLV L TV D+V
Sbjct: 182 LDPKRSGCSYPFKELAGVGVALKLIQGLFEQAGLSQRN-----WEEYLDLVCLGTVADIV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V  GL        PGL+ALI+   I    +    LG+ + P +NA GR+G+
Sbjct: 237 PLQGENRILVKHGLPQISNSKRPGLQALIKVSGIKAEVLGTRELGFGLAPRLNAAGRMGD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + LG  LL+++D    E +A +LD  N  R+ +ES +L +A A + T   +I Q  V+V+
Sbjct: 297 AGLGVELLLAEDLLVAEEMAEELDRGNHERQQVESKVLSEALALLETDS-EISQGKVLVL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WHPG++G++A+RL ++F RP F IS  E+GKG GS RSI GF++ + +     +  
Sbjct: 356 ASENWHPGVIGIVASRLVDRFYRPVFMIS-LEEGKGKGSARSIPGFNLYQAMVSC--QDH 412

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGHAMAAG ++               A   +     TP   +D ++N + +++  +
Sbjct: 413 LEQFGGHAMAAGFSIHVDKINEFRKTINAMAEEFLSEEHLTPNLDLDALINLNDLSMDTV 472

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             L    P G  NP P+       + + R V     HL+M    +D   L  I F +   
Sbjct: 473 QELNQLSPLGHCNPGPILGCCQATVINCREVGKNGGHLKMRVR-EDHTVLDGIGFNLASY 531

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 M +    + +     +N W G    QL V +  
Sbjct: 532 S----EMLAANDTVDMAFIPSINVWNGRTSVQLEVKELK 566


>gi|217979197|ref|YP_002363344.1| single-stranded-DNA-specific exonuclease RecJ [Methylocella
           silvestris BL2]
 gi|217504573|gb|ACK51982.1| single-stranded-DNA-specific exonuclease RecJ [Methylocella
           silvestris BL2]
          Length = 603

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 271/594 (45%), Positives = 365/594 (61%), Gaps = 5/594 (0%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            ++FLGVE S  G  W   L   G  RA AITQ     DI+AR+L  R V  +   ++L+
Sbjct: 9   PRSFLGVEHSALGVSWRDRLDAGGQARAAAITQLRGHGDILARILAGRGVGPETCDEYLD 68

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R L+PDP  + D + AA RI  A+  S K+ IFGDYDVDGAAS AL+  + + C V 
Sbjct: 69  PTLRRLLPDPFCIKDMEPAAERIAAAVEGSRKLAIFGDYDVDGAASSALLADYFTACGVE 128

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           A +YIPDRI +GYGPN   +      G  L+ITVDCG+ S+  L  AT  G++ IV+DHH
Sbjct: 129 AFVYIPDRIFEGYGPNIGAIRNLAAAGCHLLITVDCGTMSHGPLAEATALGLEPIVLDHH 188

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240
           Q     +P   +VNPNR DDLSG G LCAAGVVFL L+ + R LR+          DLLS
Sbjct: 189 QAPEN-LPDALIVNPNRQDDLSGLGALCAAGVVFLTLIAVNRRLREKGFFNLRPEPDLLS 247

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LDLV+LATV DV PL GLNRA+V KGL V R++  PGL AL +   +  P T  +LG++
Sbjct: 248 GLDLVSLATVADVAPLGGLNRAFVTKGLAVMRQRLRPGLSALFDVAKLEGPPTPYHLGFL 307

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LG+RLL   D  E + +A +LD LN+ R+++ES  L++AEA+ + 
Sbjct: 308 IGPRINAGGRIGDAALGARLLSIADPIEAKRIAEELDRLNRERQVIESGTLDEAEAQAIA 367

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                  A+ IVV  D WHPG+VGL+A+RLKE+  +P+FAI+      G+GSGRS+ G D
Sbjct: 368 -GGLSPDAAAIVVASDGWHPGVVGLVASRLKERQRKPAFAIA-FSADLGVGSGRSVPGVD 425

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G +V  AVE GILVKGGGHAMAAG+T+ +        F +    +            +D
Sbjct: 426 LGAVVRAAVEAGILVKGGGHAMAAGITIAKDRLEDFRGFLESKLADKRTEGGDAHALLVD 485

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
             + A+     L+  LE AGPYGAGN  PVFA P H+L  +  V   HLQ+  ++ D  T
Sbjct: 486 AAVTAAGATATLVKSLERAGPYGAGNSEPVFALPAHRLMRVNEVGNGHLQLRAQAGDGST 545

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           +  IAFR    PL + L  + G  +H+ G L ++ W G++R +LR++D +P  G
Sbjct: 546 IDGIAFRAAAQPLEKALRAAVGSSVHLAGALALDSWGGTERVRLRLIDLAPASG 599


>gi|117925055|ref|YP_865672.1| exonuclease RecJ [Magnetococcus sp. MC-1]
 gi|117608811|gb|ABK44266.1| exonuclease RecJ [Magnetococcus sp. MC-1]
          Length = 592

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/593 (34%), Positives = 315/593 (53%), Gaps = 17/593 (2%)

Query: 10  ECSISGFRWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRL 67
           + S++G  W       EG NR     Q   +   +A +L +R +      + FL P ++ 
Sbjct: 6   KSSLTGKLWTLRCQPDEGHNRV---VQALGLSHYLAPLLASRKLCGAGETRQFLAPRLKD 62

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
           L  DP  L D   A  R+ +A+   EKI +FGDYDVDGA S AL+MR+     V   +YI
Sbjct: 63  L-ADPYDLLDMRVAVERLAEALERGEKIAVFGDYDVDGATSSALLMRYFHELGVALRVYI 121

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R+ +GYGP+   M     EG  L+ITVDCG T+++ LQ A   G+ VI+ DHHQ + +
Sbjct: 122 PNRLTEGYGPSVGAMRTLAEEGVSLVITVDCGITAFEPLQEAKALGLAVIITDHHQAREQ 181

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDL 244
              A A++NPNR D+      L   GV F +++ + R+LR+            L  LLDL
Sbjct: 182 LPEALAVINPNRQDEPFPYKELAGVGVAFYLVMALNRLLRERGWFNKGRQEPVLKPLLDL 241

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMI 301
           VA+ TV DV  + GLNRA V  GL V   + NPGL AL++ V I      +T+ ++G+ +
Sbjct: 242 VAVGTVADVAGMRGLNRALVTTGLHVLSERSNPGLAALMQVVGIGEEVKELTSTHIGFQL 301

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP +NAGGR+G+  LG +LL   D  +   +A  LD  N+ R+ +E  +L+QA  +V  +
Sbjct: 302 GPRLNAGGRLGQGALGYQLLSCHDQAQALPIAQTLDASNKERQEIERTLLKQAMDQVEAE 361

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFD 420
              I +  + VV G+ WH G++G++A+RL +K+ +P+  I+ + E G G GSGRSI G +
Sbjct: 362 NQPILRRGL-VVAGEGWHAGVIGIVASRLCDKYSKPALVIAIDAETGVGKGSGRSIPGIN 420

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +   +        L   GGH +AAGLT++R       + F+        A    P   +D
Sbjct: 421 LLAAIEA--GAAHLEHFGGHKVAAGLTIQREKIPAFMEAFEDHLTRHYQASAFFPRLTVD 478

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSE 539
             L    ++ A+   ++S  P+G GNP P+F  P   L+ I+V+   HL M+    +  +
Sbjct: 479 AELPLDELDFAVARQIQSFSPFGPGNPEPIFILPRVSLRGIKVLKERHLAMSIVCPRTHQ 538

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            ++AI FR+   P+ + +         V G L +  WRG ++ +L++ D    
Sbjct: 539 QIEAIGFRMAPGPIVDAIQAGDVAVWDVAGKLTIETWRGREKMKLQLSDVRAA 591


>gi|51473709|ref|YP_067466.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia typhi
           str. Wilmington]
 gi|51460021|gb|AAU03984.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia typhi
           str. Wilmington]
          Length = 586

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 222/585 (37%), Positives = 333/585 (56%), Gaps = 14/585 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           SI+G  W     +E I     + +   I D++AR++  R  ++   ++FL P I+ L+PD
Sbjct: 6   SINGKIWKQKQIKEDI--VTELCRSFKISDLLARIVSLRVNNLAEVENFLIPKIKNLLPD 63

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L D DKA  RIVQAI ++++I IF DYDVDGA S AL+   L   ++  ++Y+PDRI
Sbjct: 64  PFHLLDMDKAVDRIVQAIVHNQQICIFADYDVDGATSAALLKHLLRDLNIICDIYVPDRI 123

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGP P  ++K  + G +L+ITVDCG+ ++DAL+YA +  +DVIVIDHH   +    A
Sbjct: 124 YEGYGPTPLAIQKIKDNGTELLITVDCGAMAHDALKYAKDVKLDVIVIDHHISTAILPDA 183

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALA 248
            A+VNPNR+D+ S   +L A GV FL    I   L++ N         +L+  LDLVAL 
Sbjct: 184 VAIVNPNRIDETSEYKYLAAVGVTFLFATAILSNLKKRNYFSQSIPTPNLMQYLDLVALG 243

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
           TVCD++ L GLNRA+V  GL V +++ N G+K L +   I+      +LG+++GP INAG
Sbjct: 244 TVCDMMKLTGLNRAFVATGLKVMQQRQNIGIKTLYDIAGINEIPQCYHLGFILGPRINAG 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+G+SNLG+ LL +    E   LA +L+  N  R+++E  M+++A    LTQ    + +
Sbjct: 304 GRVGKSNLGANLLATSCHNEASKLANELEKYNNERKVIELLMIDEAIDIALTQ----KDS 359

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S++ V  + WHPG++G++A RLKEKF +P   ++   +G G  S RSI G D    +  A
Sbjct: 360 SLLFVVKEGWHPGVIGIVAGRLKEKFDKPVAVVA-LNNGIGKASCRSILGIDFSAEIINA 418

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +++ GGGHAMAAG TV       L DF        +  L      + D  L  ++V
Sbjct: 419 KSKDLIIAGGGHAMAAGFTVTAGKLEELQDFLNNAFSISINKLANYKHAEYDIDLTVNSV 478

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544
           N  L++ L+   P+G+GN  P+F F +  +    +V   H++           ++ L AI
Sbjct: 479 NFYLMEELKILEPFGSGNHEPIFKFDDLFILKADIVGSKHIKCMLAPDKRGFGNKVLSAI 538

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AF   GTP  + L+ SR K +   G L  N W+ +   QL + D 
Sbjct: 539 AFDAVGTPFEDILLSSRAKHISAIGTLKTNNWKDNYTIQLIIKDL 583


>gi|91215420|ref|ZP_01252391.1| single-stranded-DNA-specific exonuclease RecJ [Psychroflexus
           torquis ATCC 700755]
 gi|91186372|gb|EAS72744.1| single-stranded-DNA-specific exonuclease RecJ [Psychroflexus
           torquis ATCC 700755]
          Length = 564

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 158/578 (27%), Positives = 276/578 (47%), Gaps = 22/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW     +  I +A  + +   +   +A +L+ R V + + AK F  PS+  L  DP ++
Sbjct: 2   RWTV-TQEADIQKAEHLQKAIGVSLPIAELLIKRGVETFEKAKTFFRPSLDDLH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              +KA   I++ + +++ +M+FGDYDVDG  SVALM  +L     +   YIPDR  +GY
Sbjct: 60  KGMEKATSHILETLESNKPVMVFGDYDVDGTTSVALMTTYLKKLGFDVVSYIPDRYDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++    +G  LII +DCG  + D + YA + G++ I+ DHH+  +    A A++
Sbjct: 120 GISYQGIDYAKAQGIDLIIALDCGIKAIDKIDYAKSIGVNFIICDHHRPGASIPDAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P + D       LC  GV F ++  +   L +         + + LDLVA A   D+VP
Sbjct: 180 DPKQTDCHYPFDELCGCGVGFKLVQALQAKLDR-----PQQQIYTYLDLVATAIGSDIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL +   +  P  KA++E       +T  ++ +MIGP INA GR+    
Sbjct: 235 ITGENRVLAHFGLKLINSRRRPAFKAILENTK-KRELTITDVVFMIGPRINAAGRMKHGL 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L + LL   + +++++LA  +++ N +R+  + ++ ++A   +  Q    +  S  VV  
Sbjct: 294 LATELLCETNYEKVKVLAKDIELYNSSRKETDKSITKEALDMIKEQ--KEEGRSTTVVYQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++G++A+RL E + RP+   +   + K   S RS++GFD+   +        + 
Sbjct: 352 PHWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYDALES--SSEFIE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+E  +F      F+    + +   +  P    D  +    +   LI +
Sbjct: 409 QFGGHKYAAGLTLEEKHFENFKRKFEDVVKSTIDPELLIPEILYDSEITFKDITPKLIRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLA--HLQMTFESQDSETLQAIAFRVYGTP 552
           L+   P+G  N  P F   N      ++ +     HL+    +Q      AI F +    
Sbjct: 469 LKQFAPFGPRNMTPTFVSRNVSTTGFVKTLGEDGLHLKTNL-TQSETVFTAIGFGLGDKK 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  + ++  +   +  N W G+   QL + D  
Sbjct: 528 N----LMKKDEKFDIVYTIEENEWDGNITLQLNLKDIK 561


>gi|282877609|ref|ZP_06286424.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccalis
           ATCC 35310]
 gi|281300181|gb|EFA92535.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccalis
           ATCC 35310]
          Length = 578

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/585 (29%), Positives = 286/585 (48%), Gaps = 22/585 (3%)

Query: 16  FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W       E    A  + +K  I  ++A++L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYVPPTSEETKAANELGEKLNISPLLAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDLAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + D + YA + GID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDHAQETGVKLIIILDCGIKAIDEIAYAKSLGIDFIICDHHVPDEVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HL   GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDSYPFKHLSGCGVGFKFMQAFAK-----NNSIPFSRLIPLLDFCAVSISADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+   NR     GL    +  + GLKA+I+  N++   I+  ++ + IGP INA GR+ 
Sbjct: 237 VPVTDENRILAFHGLKQLNQNPSVGLKAIIDICNLNGRDISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  +D  N+ R+ ++  M E+A   ++ + +  +  S IV
Sbjct: 297 NGKESVDLLVEKDFASALRQAKHIDEYNEQRKDIDKQMTEEA-NLIVAKLESQKHHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++ + +    GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLTRDGE-FATGSARSVTGFDVYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +LV  GGH  AAGLT+   +  +  + FQK+    +    T P+  ID +++   +   L
Sbjct: 413 LLVNFGGHTYAAGLTLRWDDIKKFRERFQKYVDLHIEPEQTEPILDIDAIIDFKDITKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFA-FPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GN  P+F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 HADLKKFSPFGPGNSKPLFGTLGVFDYGTSKVVGREQEHIKLELVDSKSSNIVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +    ++   RG    +   L  N ++     QL++ D  P+E
Sbjct: 533 SAS--ARYIKSKRG--FDIAYTLEDNVFK-RNAVQLQIEDIRPIE 572


>gi|167462059|ref|ZP_02327148.1| YrvE [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 813

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 185/595 (31%), Positives = 290/595 (48%), Gaps = 30/595 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72
           S  RW    G    +    + + H +  + AR+L  R ++  + A+ FL+ S +    DP
Sbjct: 4   SKARWQ--TGCAESSVVQKLAEAHHLDTLTARLLALRGITTPEAAESFLH-SRQDGFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  KA  RI  A+ + E I I+GDYD DG  S +L+M  L       + YIP R+ 
Sbjct: 61  FLMKDMKKAVDRIRLAVEHKEFIRIYGDYDADGVTSTSLVMFLLRKIKARFDYYIPHRVR 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +EK   +G  LIITVD G ++ + + Y    G+DVIV DHH+         
Sbjct: 121 EGYGLNRQAVEKAAEDGVDLIITVDTGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           ALVNP + D      HL   GV F +   +   + +            LL+LVA+ TV D
Sbjct: 181 ALVNPKQADCPYPFKHLAGVGVAFKLAHALLDRVPE-----------ELLELVAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           ++P  G NR  V  GL   ++   PG++AL++   I    +T+ +LG+ +GP +NA GR+
Sbjct: 230 LMPFHGENRTIVKMGLKRMQQSAFPGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G +N    LLI+ DS     LA  LD LNQ R+ +   + E+A A    Q         +
Sbjct: 290 GSANNSVELLITGDSGRANELAQLLDELNQERQRIVREINEEALAIAAEQVQKGNT--FL 347

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV    W+ G++G++A+++ E + RP+   S   E G   GS RSIE FD+ + ++   E
Sbjct: 348 VVAKPDWNEGVIGIVASKIVETYYRPTIVFSMNDESGLAKGSARSIESFDMYENLTACRE 407

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L   GGH  AAG+T+++ +   L       A  ++      PV + D   +   V +
Sbjct: 408 --LLEHFGGHRSAAGMTIKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAACHLKDVPL 465

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET---LQAIA 545
             I+ L+   P+GA NP+P F   N +L  +R++     H+++       E+   ++A+ 
Sbjct: 466 GWIEQLQKLEPFGASNPSPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGESTVQIEALG 525

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           F           + S   R+ V G L +N W G +R QL + D    E   F  +
Sbjct: 526 FGKAHLS----ELISPTARLDVLGELGINEWNGIRRPQLTLKDLRITEIQLFDWR 576


>gi|325570352|ref|ZP_08146167.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156680|gb|EGC68856.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus ATCC 12755]
          Length = 766

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/591 (30%), Positives = 288/591 (48%), Gaps = 31/591 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            F WV     E       + Q   IP+ +  +L  RN+ + +    FL+  ++ L  DP 
Sbjct: 5   NFHWVLPQDSEATPVFKELIQARKIPERIGALLWQRNIRTAEALDAFLSTDLQYLH-DPF 63

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +  D DKA  RI +AI N E+I+I+GDYD DG  S  ++   L      A  Y+P+R  D
Sbjct: 64  LFHDMDKAVERIHEAILNGERILIYGDYDADGITSTTVLKETLELLGAEAEYYLPNRFSD 123

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN ++ +  I  G QLIITVD G + ++A+ YA  QG+DVIV DHH++ +E   A+A
Sbjct: 124 GYGPNITVYKDKIAAGTQLIITVDNGVSGHEAIAYAQGQGVDVIVTDHHELPAELPEAFA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +     G L   GV F V   +   +            + LLDLVA+ T+ D+
Sbjct: 184 IVHPRHPEGNYPFGDLAGVGVAFKVACALLEEVP-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL + ++    GL  L+         +   ++G+ +GP +NA GR+ 
Sbjct: 233 VSLTDENRLLVSNGLKMIQQTDRLGLNELLTVSGLKKRTVNETDIGFAVGPRLNAIGRLE 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N   RLL + D +E   LA  LD +NQ R+     ++++A+ K+           V +
Sbjct: 293 DPNPAVRLLTTFDEEEAVTLAKTLDTINQQRKTFVEEIMKEAQEKI------DPANHVHL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V GD WH G++G++A R+ +  G+P   ++ +E+G   GSGRS+   ++      A  + 
Sbjct: 347 VVGDNWHEGVLGIVAGRIMQSTGQPVIVLTKKENGLAKGSGRSVAALNL--FEMLATMKD 404

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GL++   +   L     ++       L       ID  L  + V+I  
Sbjct: 405 MFTSFGGHHAAVGLSIPIDHLDMLQAQMNRYVEENGIDLSQGIPLAIDEELPLAEVSINF 464

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           I+ L    P+G  NP P F F N   Q+ R +     HL++    + +  L  I F    
Sbjct: 465 IESLNVLAPFGTDNPLPKFLFSNLSTQNARQIGTENQHLKLVMTDESNLQLDVIGFG--- 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
              G+  ++    R+ + G L +N W G+K+ QL + D + VEG   F  +
Sbjct: 522 --FGKDSVEFENDRLSIVGQLSINEWNGNKKPQLMLDDFA-VEGLQLFDYR 569


>gi|261418404|ref|YP_003252086.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           Y412MC61]
 gi|319767637|ref|YP_004133138.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           Y412MC52]
 gi|261374861|gb|ACX77604.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           Y412MC61]
 gi|317112503|gb|ADU94995.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           Y412MC52]
          Length = 788

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 287/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E       + ++  +  ++AR+LV R V +   A  FLNP +     DP +L
Sbjct: 7   RWEVERLDE--QAVRRLAEEAGVTPLLARLLVRRGVRTASEAVAFLNP-LEQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A +R+ +AI   E+++++GDYD DG  S ++M+  L     +   YIP+R  +GY
Sbjct: 64  DGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +        G  +I+TVD G  +   +  A   G+DVIV DHH+       A+A++
Sbjct: 124 GPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGMDVIVTDHHEPGPVLPEAHAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLDLVA+ T+ D+VP
Sbjct: 184 HPKQPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L+G NR +V  GL   R     GL+AL  +  I  + I  + +G++I P +NA GR+G +
Sbjct: 233 LVGENRLFVAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL++DD  E   LA ++D LN+ R+ + + + E+A   V  Q    +   V+VV 
Sbjct: 293 DPAVALLMTDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHR-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           G+ W+ G+VG++A++L E+F RP+  +S   E G   GS RSI GFD+    S +    +
Sbjct: 352 GEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDL--FASLSQCRDL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A   +     TP   ID   + + + ++  
Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLSAA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             LE   P+G GNP P+       ++++R V     H++  F SQD   + AI F +   
Sbjct: 470 RGLERFAPFGVGNPRPLVLIEGASVETMRRVGANGAHMKAVF-SQDGAAIDAIGFGLG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   R+   G L VN W G  + QL + D +  +   F  +
Sbjct: 527 --PLCEEIAPDARISAVGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVR 573


>gi|260591573|ref|ZP_05857031.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella veroralis
           F0319]
 gi|260536482|gb|EEX19099.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella veroralis
           F0319]
          Length = 573

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/585 (27%), Positives = 278/585 (47%), Gaps = 22/585 (3%)

Query: 16  FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W       E  N A  +  K  +   +A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYTPPTTEQSNAAKELGDKLGMSPTLASLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+ + E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA   GID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDYAAETGVKLIIILDCGIKAIEEITYAKQLGIDFIICDHHVPDETMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD      LC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDSYPFKSLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+I  NR     GL    +  + GLKA+I+   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVIDENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  +       A  +D  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKKSVDLLVEREYSLALNQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  ++    GS RS+ GFD+   +       
Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT++  +       FQ +    +       +  ID V++   +   L
Sbjct: 413 LLLNFGGHTYAAGLTMKWSDVKEFRKRFQAYVEEHIEPEQREAILDIDAVIDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G  NP P+F   +     + +VV     H+++     + +  +  IAF  
Sbjct: 473 HSDLKRFAPFGPANPKPIFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++     QL++ D  P E
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTE 572


>gi|261880324|ref|ZP_06006751.1| recombination protein J [Prevotella bergensis DSM 17361]
 gi|270333014|gb|EFA43800.1| recombination protein J [Prevotella bergensis DSM 17361]
          Length = 584

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/587 (28%), Positives = 280/587 (47%), Gaps = 22/587 (3%)

Query: 16  FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W         I +A  + +K  I  I+A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWKYDPPTSNNIQQAKELGEKLNINPILAGLLIKRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+IM++GDYDVDG  +VAL+ +FL     N   YIP R  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVYKFLQQFYSNIEYYIPSRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++       +LII +DCG  + + + YA + GID I+ DHH    E  PA A
Sbjct: 122 GYGVSKKGIDYAKENDVKLIIILDCGIKAIEEIGYAKSIGIDFIICDHHVPDEEIPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD      L   GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRTDDTYPFKQLSGCGVGFKFMQAFAK-----NNGIPFSRLIPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLK++I+   +S   I+  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSVGLKSIIDICGLSGREISMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A ++D  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKESVELLVEKDFSMALEEARRIDEYNEQRKDIDKQMTEEA-NQIVAKLESQEHHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G+VG++A+RL E + RP+  ++  +     GS RS+ GFDI   +       
Sbjct: 356 LYDEHWKKGVVGIVASRLTEMYFRPTVVLT-RDGDFATGSARSVMGFDIYSAIKHC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+  GGH  AAGLT++  +    C+ F  +    +    T     ID  ++   ++  L
Sbjct: 413 ILINFGGHTYAAGLTLKWEDIHEFCNRFHNYVEEHIEPEQTEAYLDIDAEIDFKDISKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRV 548
            + L+   P+G GN  PVF         + +VV     H+++     +S T +  IAF  
Sbjct: 473 HNDLKRFSPFGPGNTKPVFCTKGVYDYGTSKVVGRFQEHIKLELVDSNSSTVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             +           +   +   +  N ++   + QL++ D  P E  
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIENNVFK-RNQVQLQIEDIRPAESE 574


>gi|218439815|ref|YP_002378144.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7424]
 gi|218172543|gb|ACK71276.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7424]
          Length = 654

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/583 (28%), Positives = 283/583 (48%), Gaps = 20/583 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           +   RW+       I     + Q   +  ++A+VLVNR ++    A+ +L P    L+P 
Sbjct: 3   LPNQRWIISSPDPKI--VEQLVQTTGLLPLMAQVLVNREINTPELAQVYLEPE-SQLLPQ 59

Query: 72  P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P     D   +   +  AI + +KI+I GDYD DG  S AL++R L H   + +  IP R
Sbjct: 60  PLEEFPDLGVSVELLQDAIASQDKIVICGDYDADGMTSTALLLRALKHLGADVDYAIPSR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N  ++E   + G  LI+TVD G ++Y+ +  A + G+ VI+ DHH +  +  P
Sbjct: 120 MKEGYGINTRIVEDCASSGVGLILTVDNGISAYEPIARAIDLGLSVIITDHHDLPEKLPP 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  L + S    L   GV +++ V   + L     +        LL+L  L T+
Sbjct: 180 ADAILNPKLLPESSPYRGLAGVGVAYILAVTTAQNLGLLKGLT-----DQLLELFTLGTI 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307
            D+ PL+G+NR ++ +GL    +    G++ALI+          +  +++G+ +GP INA
Sbjct: 235 ADLAPLVGVNRRWLKRGLRKLPKSQLAGIQALIQMAGVSEEQKQLQPDDIGFKLGPRINA 294

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+  L   LL +D+       AM+ + +NQ R+ +   + E+A   + T   + QQ
Sbjct: 295 IGRIGDPQLVIELLTTDEEGLALERAMQCEQINQKRQQLCKKIEEEAINLIETLPVNWQQ 354

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+V+    WH G++G++A+RL E++G P F  ++EE+      G +    +     + 
Sbjct: 355 DRVLVIVQPHWHHGVIGIVASRLVERYGAPVFIGTYEEEEPEKIRGSARGIEEFHVFEAL 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +L K GGH  A G ++   N     +   +FAH  +      P+ KID   +   
Sbjct: 415 EFCDDLLGKYGGHKAAGGFSLPIQNLEAFKERLSRFAHQCLKPEYLKPLIKIDAQTDFKQ 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +   L   +++  P+G GN  PVF   N KL   R+V   HL++    +D   ++AIA+R
Sbjct: 475 LTPYLYQQIDNLQPWGIGNDFPVFWTANVKLIEQRIVGQKHLKLVLAQEDGTEIKAIAWR 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                            + +   L  N+W G+   +L ++   
Sbjct: 535 WADYF-------PLPTCLDIAYKLKENHWNGNTTIELEIIGIR 570


>gi|189425065|ref|YP_001952242.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter lovleyi
           SZ]
 gi|189421324|gb|ACD95722.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter lovleyi
           SZ]
          Length = 586

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/601 (28%), Positives = 293/601 (48%), Gaps = 17/601 (2%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKD 59
           M   A  G+  S    +W+    Q       A++    +  + A +L +R ++  +    
Sbjct: 1   MKSPASRGISVSTMHKQWILK--QTDPATVAALSAATGLSAVTASILSSRGLTEPEQVAS 58

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FL+P++  ++ DP ++   ++A  R+V A    E + I+GDYDVDG ++ AL++  L   
Sbjct: 59  FLSPTLAAML-DPFLMAGMEQAVVRLVAARAAKETVCIYGDYDVDGISATALLVSGLRAM 117

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
            +N   +IP+R+ DGYG N   +      G +L I+VDCG T+ +      + G+D+I+ 
Sbjct: 118 GLNVTYHIPNRMEDGYGLNGDALRLIKERGIELAISVDCGVTAIEEAILCRSIGLDLIIT 177

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDL 238
           DHHQ   +   A A++NP+R D       L   GV F +LV +   LR       N  DL
Sbjct: 178 DHHQPLDQLPDAIAVINPHRRDCSYPFKGLAGVGVAFNLLVALRSRLRDQGAFGDNGPDL 237

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
              LDLVAL T+ D+VPL+  NR     GL         GL AL +   I   +++  +G
Sbjct: 238 RQWLDLVALGTIADLVPLVEQNRLLTSAGLQRMGDGCRIGLAALKQVAGIKGEVSSGQVG 297

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + + P +NA GR+  +  G  LL+++D Q+   L+ +LD  N  RR +E  + ++A A++
Sbjct: 298 FQLAPRLNAVGRLESAVPGVELLLTEDPQQAAALSAELDGANLERRQVERRIFDEAIAQI 357

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
             Q   +Q  + IV+    WH G+VG++A+RL E++ RP+  ++  +D  G GSGRSI G
Sbjct: 358 EAQG-GLQDRNSIVLSSPDWHQGVVGIVASRLVERYYRPTLLVAERDDASGKGSGRSISG 416

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
           F + + +        L + GGH  AAG+TVE        D F++ A   +      P   
Sbjct: 417 FHLLEALHEC--ADFLQRYGGHRAAAGVTVEPGQMAAFADAFEQAALTRLGDQELIPELV 474

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           +D  +    +  AL+  L+  GP+G GN  PV      ++   R     HL +  + +D 
Sbjct: 475 LDVEVAPRDLTSALVAELQRLGPFGMGNTTPVLLLRQMQVLDCRCFGEGHLNLRLQ-RDG 533

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
              +A+ + +    +           + +   + +  W G ++ +L + D    E +H A
Sbjct: 534 LQFKALGWGMAERTVPAL--------VDLACTVKLETWNGREQLRLELKDFRTSEDYHAA 585

Query: 599 K 599
           +
Sbjct: 586 Q 586


>gi|189184334|ref|YP_001938119.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181105|dbj|BAG40885.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi
           str. Ikeda]
          Length = 587

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 230/586 (39%), Positives = 335/586 (57%), Gaps = 14/586 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           E S+ G  W      E I     I QKH + D +A++L  +N+ ++    FL P+I+  +
Sbjct: 6   EQSVLGNYWNKTEFDEYI--IETIRQKHGVSDFLAKLLYAQNIDLEQISYFLTPTIKEAL 63

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D DKA  R++ AI   E I IFGDYDVDGA S AL+  +     +   +YIP+
Sbjct: 64  PDPFHLLDMDKAVNRVIHAINQQEHICIFGDYDVDGATSSALLKNYFCELGIEPIIYIPE 123

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYGP+ S ++K  + G  LIITVDCG+++Y+AL  A  Q IDVIVIDHH    +  
Sbjct: 124 RLTEGYGPSVSAIKKLKSAGISLIITVDCGTSAYEALAEAKAQHIDVIVIDHHLSVEQLP 183

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247
            A A++NPNRLD+ S   +L A GV FL LV +   LR+ N         L+  LDLVAL
Sbjct: 184 DAVAIINPNRLDETSKYNYLAAVGVSFLFLVALRSALRKLNYFADKSEPSLVKYLDLVAL 243

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDV+ LIGLNRA+V KGL +  +  N G+KAL              LG+++GP INA
Sbjct: 244 GTVCDVMALIGLNRAFVTKGLEIMAQHQNVGIKALGYLSEAEFSSDCYYLGFVLGPRINA 303

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIG+S+LGS+LL +    E   +A +L+  N  R+L+E  MLE+A      Q      
Sbjct: 304 GGRIGKSDLGSKLLSTKCQIEAYNIASELENYNSERKLIEKVMLEEAVTIAREQA----D 359

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            +VIVV   +WHPG++G++A+RLK+ F +P   IS ++   G  S RSI+G DIG  ++ 
Sbjct: 360 NNVIVVANHKWHPGVIGIIASRLKDLFHKPIVVISLDDT-LGRASCRSIKGIDIGSKIAE 418

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A  +G+L+ GGGHAMAAG T++R   G L +F  +     +  L    +      L+ ++
Sbjct: 419 AKLKGLLITGGGHAMAAGFTIKRDLIGDLKNFLNQELALDMKNLTGHNIRNYAIDLSIAS 478

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS----ETLQA 543
           +NI  +  ++   P+G GNP P+F   N KL+    ++  H+       ++    +T +A
Sbjct: 479 LNINTVHEIQKLAPFGNGNPEPIFKLTNIKLKYASQLSNKHVHCVLSEWENINAVKTTKA 538

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           IAF    T L + L+ +  K + + G++ VN WRG +  Q  ++D 
Sbjct: 539 IAFN-PRTQLFDALLSTYTKPIDLIGNIKVNRWRGREEIQFVIMDL 583


>gi|296132723|ref|YP_003639970.1| single-stranded-DNA-specific exonuclease RecJ [Thermincola sp. JR]
 gi|296031301|gb|ADG82069.1| single-stranded-DNA-specific exonuclease RecJ [Thermincola potens
           JR]
          Length = 1233

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/579 (30%), Positives = 277/579 (47%), Gaps = 23/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W        I     + ++  I  I A++L NR + S++ A+ FL  S+  L  DPL 
Sbjct: 6   KIWSFHNNNTFIQEL--LARRLGISKITAQILANRGICSVEEARTFLFGSLEDLY-DPLQ 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   ++A +RI QAI  +++I+++GDYDVDG  S  L++  L       + YIP R+ +G
Sbjct: 63  MHGMEEAVQRIKQAIKENQRILVYGDYDVDGITSTVLLLDTLEFLGAACDFYIPHRLTEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + ++    +G  L+ITVDCG +S D + +A + G+++I+ DHH+       AYA+
Sbjct: 123 YGLNINSLKTIKEQGFNLVITVDCGISSADEVSWARDNGLEIIITDHHEPPEHIPQAYAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP +         L   GV F +   + R   ++  VP       LLDLVAL TV D+V
Sbjct: 183 INPKQAWCTYPFKELAGVGVAFKLAQALLRAHEKEYLVP------KLLDLVALGTVADMV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL+G NR    +GL +       GL ALIE        I +E + + + P +NA GRI  
Sbjct: 237 PLVGENRITTKQGLQLINAGHREGLAALIEVAGLADQSIDSEQIAFALAPRLNAVGRIDH 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G RLL   + +    +A  LD  N+ R+ +E+ +  +A   +  + + +     +V+
Sbjct: 297 AAKGVRLLREKNREMAVSIAKALDRANKERQAIENLIFTEAVEII--ESNSLLDNKALVL 354

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH GIVG++A++L  ++ RP   +S   +    GS RSI GF++   +     E  
Sbjct: 355 ARPDWHLGIVGIVASKLVNRYCRPVILLSVNGE-VAKGSARSIPGFNLFAALQSC--EAF 411

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGH+ AAGLT+   +       F +     + A        IDG ++   V   L 
Sbjct: 412 LKKYGGHSQAAGLTLNVDDISAFTAAFNEIVDQQITAEHMAEALPIDGEISFKDVTFDLY 471

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + L +  P+G GNP P+FA     +   R V     HL+M   ++    ++AI F +   
Sbjct: 472 NQLVALEPFGFGNPTPLFACRQADIIDCRKVGSDGKHLKMKIMNE-KLLMEAIGFNLSAC 530

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       ++ +   L  N W G    QL V    
Sbjct: 531 QNS----IDFADKIDIVFELKKNDWNGRSNLQLNVRAIK 565


>gi|289423185|ref|ZP_06425000.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus
           anaerobius 653-L]
 gi|289156516|gb|EFD05166.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus
           anaerobius 653-L]
          Length = 815

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 184/586 (31%), Positives = 306/586 (52%), Gaps = 23/586 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+      G ++   +T+K  I D + ++L+NR + + +    +++P +  L  DP +
Sbjct: 2   KNWIVKSL--GRSKGNEVTKKFNINDNIGQILINRGIETEEQLDLYMHPDLTSLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D+A  RI +AI N+EKI IFGDYDVDG +S +++  +          YIP+R+ +G
Sbjct: 59  LKDMDRAVDRIKRAISNNEKICIFGDYDVDGVSSTSILCLYFESIGYQVEFYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +    G  LII+VDCG TS + ++ A   GIDVI+ DHH+ + +   AYA+
Sbjct: 119 YGLNDEAIRQIGQMGTDLIISVDCGITSVNEVETARKLGIDVIITDHHEPQEKLPQAYAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       +C  GV F ++  +              ++   L++VALAT+CDV+
Sbjct: 179 IDPKREDCRYPFKGICGCGVAFKLIHAL------SGDRDFYNNINRYLEIVALATICDVM 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313
           P++  NR  V  GL +  R  N G++ L+   +I  + + + +LG+ IGP INA GR+G 
Sbjct: 233 PVLDENRIIVKNGLEIMGRGNNIGMRELLGVCSILDTKMKSSHLGFAIGPRINASGRLGF 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  S D Q+  +LA  +++ N+ R+++E+ +L +AEA +       Q+  VIV+
Sbjct: 293 SRLGVELFTSKDPQKARLLAESMNLKNEERQMVEAKILMEAEAMIDRDS-KYQEEKVIVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH GI+G++A++L EK+ +P+  +   EDG   GS RSI+GFD+ K +S    + +
Sbjct: 352 AGHGWHHGIIGIVASKLTEKYYKPTVLL-CIEDGVATGSARSIKGFDLFKAMSEC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           ++K GGH  AAGLT+   N   L +     A   +          I+  L   A+++ L+
Sbjct: 409 MMKFGGHEQAAGLTMAEGNIQALRERINAIADYELKKEDLIENINIEFELEEDAISLDLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             L    P+G  NP P F   ++K++   ++     HL+++ E +   T   I F +   
Sbjct: 469 KDLHILEPFGIKNPTPYFMVRDYKVKKAYLIGKDKNHLKLSIEKE--YTYDCIGFNMGHL 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
                   S   R+ +   L  N ++G    Q+ + D    +    
Sbjct: 527 ----MDKFSVDDRVDIVFQLDENTFKGRTTVQMLIKDIRLSKPDKI 568


>gi|167646973|ref|YP_001684636.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter sp. K31]
 gi|167349403|gb|ABZ72138.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter sp. K31]
          Length = 605

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 226/589 (38%), Positives = 338/589 (57%), Gaps = 8/589 (1%)

Query: 6   FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           FL V  S+SG  W    G   + R+    Q H + + +AR L +R V +D A+ +L P++
Sbjct: 14  FLDVSRSLSGRAWRERPGDAAVARSH--QQLHGLSEPLARALASRGVGVDDAEHYLRPTL 71

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           + L PDP   TD D+AA  ++ A+ +    M+F DYDVDGA S A ++R+  +  V   +
Sbjct: 72  KALFPDPSSFTDMDRAAEILIDALESGRSTMVFADYDVDGATSAAQLVRWFRYMGVELPI 131

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           YIPDR+ +GYGP+P+  +   + GA L++T+DCG+ +YDA+  A   G++V+VIDHH ++
Sbjct: 132 YIPDRLTEGYGPSPAAFKTIRDTGADLVVTLDCGAAAYDAIASAATIGLEVVVIDHHLMR 191

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLL 242
            +   A A+VNPNR    SGQG L AAGV F++L  + R  R+           DL   L
Sbjct: 192 EDPPAAAAVVNPNRPGCQSGQGVLAAAGVTFVLLAALNREARRRGLFTDERPQPDLRQWL 251

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVA+  VCDV  L+G NRA    GL      GNPGLKAL E    S P +  + G+++G
Sbjct: 252 DLVAMGEVCDVTQLVGFNRALTTLGLRTMSSWGNPGLKALFEVGKGSGPASVFHAGFILG 311

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGRIG S+LG+RLL +DD +E  MLA +LD LN  R+ +E+ ++E+A A +    
Sbjct: 312 PRINAGGRIGRSDLGARLLSTDDPEEARMLAEELDGLNTERKAVEAGVVEEAAAVLERGS 371

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDI 421
           +    A VIVV G+ WHPG++G++A RL+E++ +P   I        G GSGRS  G ++
Sbjct: 372 NFNPDAPVIVVAGEGWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQPGVNL 431

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  +  A E G+L+ GGGHAMAAGL++   +      F ++     +   +      ID 
Sbjct: 432 GAAIQAAFEAGLLMAGGGHAMAAGLSIRPDSIPEFRAFLEERLAGEM-EAVGVEGVDIDA 490

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
           ++   A N AL    +   P+G GNP P+FA    + + +  +   H+++       + +
Sbjct: 491 LVQPRAANRALWTEFQQLAPFGPGNPEPMFALAGVRPERMMAMKGGHVRVDLVGPSGDRI 550

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +AI++R   TPLG+ LM   G  +HV G L  + + G +  QL + DA+
Sbjct: 551 KAISWRSVETPLGQRLMAGGGA-LHVVGRLKPDDYMGREGVQLEIEDAA 598


>gi|226311467|ref|YP_002771361.1| hypothetical protein BBR47_18800 [Brevibacillus brevis NBRC 100599]
 gi|226094415|dbj|BAH42857.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 782

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/589 (31%), Positives = 285/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E    A +I     +  +V+++LV R +     A+DFL      L  DP +L
Sbjct: 7   RWKLATYDE--QLAASIAADCQLTPLVSKLLVIRGIDTSQKARDFLQAG-PELFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              +++  RI QAI   E I I+GDYD DG +S +LM+  L       + YIP+R  +GY
Sbjct: 64  DGMEQSVHRIQQAIQRQEPICIYGDYDADGVSSTSLMVHLLRQLGAVFDYYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   +      G +LIITVD G ++ + + YA   G+DVIV DHH+  +    A+A++
Sbjct: 124 GLHKDALAHLHQSGYKLIITVDTGISAVEQVAYANQLGLDVIVTDHHEPPAVIPEAFAVI 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP +         L   GV F V   + +              L L DL AL T+ D+VP
Sbjct: 184 NPKKPGCSYPFDMLAGVGVAFKVGHALLKE-----------PPLHLADLAALGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+  NR     GL       N GL+ALI       + ++A ++G+ +GP +NA GR+  +
Sbjct: 233 LVDENRILARAGLKRLNHTRNLGLQALIRVCGLADTELSAGHVGFALGPRLNASGRLETA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               +LL + D  E E  A  LD LN+ R+ + +AM E+A   V       Q  +V+V+ 
Sbjct: 293 ESAVKLLTTSDMDEAEKCAQALDDLNRERQEIVAAMTEEAVQMVNELYPPDQN-NVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+ G+VG++A+RL E F RP+  +    E G   GS RSI GFD+ + ++   E   
Sbjct: 352 KEGWNVGVVGIVASRLVELFYRPTIVLGIDPEKGTAKGSARSIAGFDMYEGLTACKEW-- 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   N   L     + A   + +   TP+ K+D  ++   +++   
Sbjct: 410 LPHYGGHTMAAGMTLPVENLDLLRQKLNELAGEWLSSEDFTPMTKVDVAMSMEEISLTAA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + LE   PYG GNP P+      + Q +R +     HL+ T  ++   +L AI F     
Sbjct: 470 EQLEQLAPYGMGNPTPLVLLEEVETQGMRTIGRDDNHLKCTL-NKAGTSLDAIGFNWAHV 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   +   R HV G L VN W G+++ QL + D S      F  +
Sbjct: 529 ----TKRVTPKARFHVLGELSVNEWNGNRKPQLTIRDLSVGHQQVFDWR 573


>gi|148284293|ref|YP_001248383.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi
           str. Boryong]
 gi|146739732|emb|CAM79563.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi
           str. Boryong]
          Length = 586

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 334/586 (56%), Gaps = 14/586 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           E S+ G  W      E I     I QKH + D +A++L  +N+ ++    FL P+I+  +
Sbjct: 6   EKSVLGNYWNKTEFDEYI--IETIRQKHGVSDFLAKLLYAQNIDLEQISYFLTPTIKDAL 63

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D DKA  R++ AI   E I IFGDYDVDGA S AL+  +     +   +YIP+
Sbjct: 64  PDPFHLLDMDKAVNRVIHAINQQEHICIFGDYDVDGATSSALLKNYFCELGIEPIIYIPE 123

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYGP+ S ++K  + G  LIITVDCG+++Y+AL  A  Q IDVIVIDHH    +  
Sbjct: 124 RLTEGYGPSVSAIKKLKSAGISLIITVDCGTSAYEALAEAKAQHIDVIVIDHHLSVEQLP 183

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247
            A A++NPNRLD+ S   +L A GV FL LV +   LR+ +         L+  LDLVAL
Sbjct: 184 DAVAIINPNRLDETSKYNYLAAVGVSFLFLVALRSALRKLHYFTDKSEPSLVKYLDLVAL 243

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDV+ LIGLNRA+V KGL +  +  N G+KAL              LG+++GP INA
Sbjct: 244 GTVCDVMALIGLNRAFVAKGLEIMAQHQNVGIKALGYMSEAEFSSDCYYLGFVLGPRINA 303

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIG+S+LGS+LL +    E   +A +L+  N  R+L+E  MLE+A      Q      
Sbjct: 304 GGRIGKSDLGSKLLSTKCQIEAYNIASELENYNSERKLIEKVMLEEAVTIAREQA----D 359

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            +VIVV   +WHPG++G++A+RLK+ F +P   IS ++   G  S RSI+G DIG  ++ 
Sbjct: 360 NNVIVVANHKWHPGVIGIIASRLKDLFHKPIVVISLDDT-LGRASCRSIKGIDIGSKIAE 418

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A  +G+L+ GGGHAMAAG T++R   G L +F  +     +  L    +      L+ ++
Sbjct: 419 AKLKGLLITGGGHAMAAGFTIKRDLIGDLKNFLNQELALDIKNLTGHNIRNYAIDLSIAS 478

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS----ETLQA 543
           +NI  +  ++   P+G GNP P+F   N KL+    ++  H+        +    +T +A
Sbjct: 479 LNINTVHEIQKLAPFGNGNPEPIFKLTNIKLKYASQLSNKHVHCVLSEWGNINAVKTTKA 538

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           IAF    T L + L+ +  K + + G++ VN WRG +  Q  ++D 
Sbjct: 539 IAFN-PRTQLFDALLSTYTKPIDIIGNIKVNRWRGREEIQFAIMDL 583


>gi|85859325|ref|YP_461527.1| single-stranded DNA-specific exonuclease [Syntrophus aciditrophicus
           SB]
 gi|85722416|gb|ABC77359.1| single-stranded DNA-specific exonuclease [Syntrophus aciditrophicus
           SB]
          Length = 586

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 176/577 (30%), Positives = 296/577 (51%), Gaps = 17/577 (2%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
            WV             + ++  I  I++ +L +R++ + D A+ +L PS+  L  +P ++
Sbjct: 18  NWVM--SDVNKEAQYLLVKELGIHWIMSSILASRDIQTPDDARKYLYPSLHDLH-NPFLM 74

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D      R++QA+Y  EKI+++GDYD DG  SVA++++FL     + + YIPDRI +GY
Sbjct: 75  KDMQLGVNRLIQAVYQGEKIVVYGDYDADGITSVAVLVKFLRDIQADVSYYIPDRIDEGY 134

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +++   + A LIITVDCG +  D + YA + G+D I++DHH+V      A A +
Sbjct: 135 GLNRKAIDRIKEKSASLIITVDCGISDCDEILYARSLGLDTIILDHHEVSDSLPTAVASI 194

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDV 253
           NP R D      HL A G+VF  L+ +   LR++         +L   LDLVAL T+ D+
Sbjct: 195 NPKRPDCPFPLKHLAAVGIVFNFLIALRGNLRKEGFWHGKPYPNLKEYLDLVALGTIGDI 254

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
            P++  NR +V  GL +       G++AL E   + +  +  E   + + P INA GR+G
Sbjct: 255 CPMVDENRIFVRVGLELLTEGKRVGIRALKEICGVDTQAVDTEKASFSLIPRINAAGRVG 314

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             +    LL++DD  +   LA+KLD  N+ RR +E  +LE+    +     D  + ++ V
Sbjct: 315 LPDDAVELLLADDMGKARDLAVKLDSYNRRRRALEKNILEEIIEDLEKTISDRNRTAL-V 373

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  ++WHPG++G++A+++ +++ RP+  IS ++ G G GSGRSI  F+I + +     E 
Sbjct: 374 MASEKWHPGVIGIVASKIADRYDRPAILISLKD-GIGKGSGRSIANFNIYQGLREC--ED 430

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L+  GGH  AAG+++   +  +  +   +     V          I+   + + +   L
Sbjct: 431 YLISYGGHRYAAGISIMEEDIEQFAETLDEIVRENVLQSDFISATFIEAQCHLNDITHEL 490

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +  +E   P+G+ NP PV    N    S  VV   HL+M   S+   +   I F      
Sbjct: 491 LAQMELLAPFGSKNPEPVLCVRNVNAFSPAVVGNNHLRMRV-SEAGVSRNTIWFSQ---- 545

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            G F+ +     + +     +N W G+   QL++ D 
Sbjct: 546 -GHFIRELNDSCLDIAFTPQINTWNGASDIQLKMKDI 581


>gi|300728171|ref|ZP_07061542.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bryantii
           B14]
 gi|299774597|gb|EFI71218.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bryantii
           B14]
          Length = 573

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/585 (29%), Positives = 282/585 (48%), Gaps = 22/585 (3%)

Query: 16  FRWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W       E    A A+ +K  +  I+A++L+ R +S +  AK F  P +  L+ +P 
Sbjct: 3   FKWKYTTPTSEQDEAAKALGEKLNMSTILAQLLIRRGISTESAAKRFFRPQLGDLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N   YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIEYYIPDRYNE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA + GID I+ DHH        A A
Sbjct: 122 GYGVSKQGIDYAYENGVKLIIILDCGIKAIEEIAYAKSLGIDFIICDHHVPDDVMPEAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD  A+A   D+
Sbjct: 182 ILNPKRTDDSFPFKHLCGCGVGFKFMQGWAK-----NNGIPFSQLIPLLDFCAVAIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLKA+I+   ++   IT  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSVGLKAIIDICGLNGRNITMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D      +A  ++  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKESVDLLVEKDFSSAIQMAKHINEYNEQRKDIDKQMTEEA-NQIVGRLESQKHQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  I+   +    GS RS+ GFDI   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVITKFGE-FATGSARSVTGFDIYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT++  +       FQ++  + +          ID VL+   +   L
Sbjct: 413 LLINFGGHTYAAGLTMKWEDVKEFRKRFQEYVESHIEPEQIEATLDIDAVLDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GNP P+F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 HTDLKKFAPFGPGNPKPLFCTIGVYDYGTSKVVGRQQEHIKLELVDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++   + QL++ D  P E
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-KNQVQLQIEDIRPTE 572


>gi|149369293|ref|ZP_01889145.1| single-strand DNA specific exonuclease [unidentified eubacterium
           SCB49]
 gi|149356720|gb|EDM45275.1| single-strand DNA specific exonuclease [unidentified eubacterium
           SCB49]
          Length = 562

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/578 (29%), Positives = 278/578 (48%), Gaps = 22/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW  L  +    +   +++   + + +A +L  R ++  D AK F  PS++ L  DP ++
Sbjct: 2   RWNILP-KSNSEKTQELSKALGVDNTIANLLFQRGITTFDEAKYFFRPSLKDLH-DPYLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A  RI +AI N E I+++GDYDVDG  SVALM  +L     N   YIPDR  +GY
Sbjct: 60  EDMLVAVERIEKAIENKENILVYGDYDVDGTTSVALMSSYLRTYYPNIATYIPDRYEEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YA+ + ID I+ DHH+   E   A A++
Sbjct: 120 GVSYKGIDFAADNNFSLIIALDCGVKAIDKVAYASEKNIDFIICDHHRPGPELPKAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +     Q     L +  L     VA A   D+VP
Sbjct: 180 DPKREDCAYPYKELCGCGVGFKLIQALGARRGQTIDDLLLYLDL-----VATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL V       G KA+++++     +T  ++ ++IGP INA GR+   N
Sbjct: 235 ITGENRILAYYGLKVINSNPRTGYKAILKQIK-KEVLTITDVVFIIGPRINAAGRMKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL+  D  +  + A +++  N +RR  +  + ++A A++  + +  ++    VV  
Sbjct: 294 HAVTLLVETDINKAAIWAAEIEQFNLDRREADKRITKEALAQI--KTNKEEERKTTVVYQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++G++A+RL E + RP+   +   D K   S RS+ GFD+   +    E   + 
Sbjct: 352 KDWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVIGFDVYNALQECSEF--IT 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+E  NF    + F++     +   +  P   +   +  + +      +
Sbjct: 409 QFGGHKYAAGLTLEEKNFENFKNKFEEVVSRTIDPKLLQPELSVTMEIELADITPKFYRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
           L+   P+G GNP+PVF   N  +    + V     HL++T +   S+ +  I F +    
Sbjct: 469 LKQFAPFGPGNPSPVFMTQNLSETGYGKCVGEDKTHLRITVKQGMSQYV-CIGFGLGDKK 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +   G+       +  N W+G+   QLR+ D  
Sbjct: 528 A----IACSGRPFKAAYVIDENEWQGNVSLQLRLKDIK 561


>gi|149184834|ref|ZP_01863152.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. SD-21]
 gi|148832154|gb|EDL50587.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. SD-21]
          Length = 594

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 232/592 (39%), Positives = 347/592 (58%), Gaps = 18/592 (3%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKH--AIPDIVARVLVNRNVSIDYAKDFLNPS 64
            GV  S++G  W    G         + Q H      IV ++L+ R V+ D  +  L+P+
Sbjct: 10  FGVSQSLTGRAWRWRGGNMD------LGQGHFGDADAIVRQILLARGVAQDDLQRHLSPT 63

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R  +PDP   +D + AA RI QA+ ++E+I I+GDYDVDGA S AL++R L    V A+
Sbjct: 64  LRDFLPDPSEFSDMETAADRIAQAVLSNERITIYGDYDVDGATSSALLIRLLRDLGVEAD 123

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            YIPDR+++GYGP+   + K    G+ LI+TVDCG+ +++AL  A++ G+DVIV+DHH+ 
Sbjct: 124 YYIPDRLLEGYGPSGEALVKLAQAGSSLIVTVDCGAMAHEALAMASDAGVDVIVVDHHKC 183

Query: 185 KSEEIPAYALVNPNRLDDL---SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLL 239
             E   A ALVNPNRLD+    +  GHL A GV FL+ + + R LR +     +   DL 
Sbjct: 184 SPELPRAAALVNPNRLDENDLAAAHGHLAAVGVAFLLAIALVRTLRGNGYFENHKEPDLF 243

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           +LLD+VAL TV DV  L GLNRA+V +GL +  R+ N G+ ALI+   +       +LG+
Sbjct: 244 ALLDVVALGTVADVAALHGLNRAFVAQGLKIMGRRDNIGMAALIDASRLKRAPACSDLGF 303

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
            +GP INAGGR+GES LG RLL + D++E + +A +L  LN+ RR +E+ + + AE ++ 
Sbjct: 304 ALGPRINAGGRVGESTLGVRLLTTQDAEEAQQIAAQLSALNEERRAIEAEVQQAAEEQLA 363

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
            Q       +V VV    WHPG++G++A R+KEK G+PS  I+ +E+G+G GSGRSI G 
Sbjct: 364 AQ----HNRAVHVVAARGWHPGVIGIVAGRIKEKSGKPSLVIALDENGEGKGSGRSIPGV 419

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+G  +  A EEG+L+KGGGHAMAAGLTV         D+        V          +
Sbjct: 420 DLGAAIIRAREEGLLIKGGGHAMAAGLTVAEDKLEAFSDWLDAHLEGPVSRASENREMLL 479

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           D  +    +   L++ L+  GPYG G P P  A    +L    +V   H+++    +D  
Sbjct: 480 DLAVAPGGLTPDLVEALDRGGPYGVGWPGPRVAVGPVRLVKCDIVGTDHVRLIASGEDGR 539

Query: 540 TLQAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + + IAFR   + +G+ L+  SRG+R+ + G + ++ W    + +L + DA+
Sbjct: 540 SFKGIAFRAAESDMGQALLHGSRGRRLWLAGRVKIDDWGSRPQAELHLEDAA 591


>gi|297584748|ref|YP_003700528.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           selenitireducens MLS10]
 gi|297143205|gb|ADH99962.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           selenitireducens MLS10]
          Length = 785

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 184/593 (31%), Positives = 291/593 (49%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNR-NVSIDYAKDFLNPSIRLLMPDP 72
           S  +W+     E   +   + +   + +I AR  V R   + +    FL+   R L+ DP
Sbjct: 4   SKSKWLVPDWSED--QVGELAEATGLSNIAARFFVQRRKTTKEEVMSFLHMDHRSLL-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D D+A  RI +AI   E+I+IFGDYD DG  S A+    L       + YIP+R  
Sbjct: 61  FLLYDMDRAVDRIRRAIEKQERILIFGDYDADGVTSTAITYLTLKRLGAEVSYYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN     +   E   LIITVD G +     + A   G+D+I+ DHH+       A+
Sbjct: 121 EGYGPNEGAFRQAAEESVSLIITVDTGISGVHEAEVAKECGMDLIITDHHEPPPVLPDAF 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+VNP +        +L  AGV F +   +   + +D           L DLVA+ T+ D
Sbjct: 181 AVVNPKQEHCSYPNPNLAGAGVAFKLAHALTGEIPED-----------LFDLVAIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L G NR     G+   R+    G+KAL++      S +  E +G+MIGP +NA GR+
Sbjct: 230 LVSLEGENRYLAKAGIEAIRQGPRAGVKALLDIAGAEVSELNEETIGFMIGPRLNAAGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             ++  + LLI+++  E + LA  +D LN+ R+ +   + E+A  +V  Q       SVI
Sbjct: 290 DSADPAAALLITENPHEAKDLAELIDGLNKERQSIVKEIAEEAIEQVEAQGV----PSVI 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +V  + W+PG++G++A+RL E++ RP   +SF +E  +  GS RSIEGFD+    S +  
Sbjct: 346 IVGAEGWNPGVIGIVASRLVERYYRPVIVLSFDQEKEQAKGSARSIEGFDM--FQSLSTC 403

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAGLT+   +   L +   + A+  +         K+D  ++   V +
Sbjct: 404 RDILPHFGGHPMAAGLTMSLSDVEELRERLIRLANESMSDDDWIRKLKVDLPVSIEEVTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFR 547
             I+ L++  PYG GNP P     +  + S+R +     HL+++  ++     L AIAF 
Sbjct: 464 NAIEDLQAMAPYGIGNPAPKVMLEDVGIVSMRRIGATGDHLKLSVNNKGSGIELDAIAFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       S+   + + G L +N W G ++ Q  V D    +   F  +
Sbjct: 524 KGDA----ADEISKLSPLSLVGKLGINEWNGKRKPQFLVEDMQISDWQLFDFR 572


>gi|126662540|ref|ZP_01733539.1| single-strand DNA specific exonuclease [Flavobacteria bacterium
           BAL38]
 gi|126625919|gb|EAZ96608.1| single-strand DNA specific exonuclease [Flavobacteria bacterium
           BAL38]
          Length = 576

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 169/587 (28%), Positives = 281/587 (47%), Gaps = 29/587 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW     +    +  AI     + +I+A +LV R V + + AK F  P++  L  +P ++
Sbjct: 2   RWNLKS-KPNQEKVQAIQSALQVDEIIATLLVQRGVETFEQAKTFFRPTLADLH-NPYLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI +AI N+E I++FGDYDVDG  +V+L+  +L     N   YIPDR  +GY
Sbjct: 60  KDMDKAVVRIEKAISNNENILVFGDYDVDGTTAVSLVSSYLRSFYPNVATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  S D + YA  + ID I+ DHH+       A A++
Sbjct: 120 GISYMGIDYAEDNDISLIIALDCGIKSIDHVNYAKAKNIDFIICDHHRPGPVLPDAIAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  GV F ++  +      +N+     DL+  LDLVA A   D+VP
Sbjct: 180 DPKRDDCSYPYDELCGCGVGFKLVQALA-----ENRNQTIADLVLYLDLVATAIAADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---------SSPITAENLGYMIGPSIN 306
           + G NR     GL V      PG+KAL++ V              +T  ++ +++ P IN
Sbjct: 235 ITGENRVLAKFGLEVINSNPRPGIKALVQNVKTRANGERSEAKKVLTITDVVFIVAPRIN 294

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GRI   N    LL   D ++ E  A +++  N +R+ ++  + ++A  ++  + ++ Q
Sbjct: 295 AAGRIKHGNEAVALLTEYDLEQAEQFASEIEQHNSDRKELDKQITKEALLQI--EENNEQ 352

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
                VV  + WH G++G++A+RL E + RP+   +   D K   S RS++ FD+   + 
Sbjct: 353 NRFSTVVYQENWHKGVIGIVASRLVENYYRPTIVFTKSGD-KLAASARSVKDFDVYNALE 411

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
              E   L + GGH  AAG+T++  N+    + F+K     +   +  P    D  ++ S
Sbjct: 412 ACAEH--LEQFGGHMYAAGMTLKEENYDNFKNAFEKVVQETIHPDLLMPEIAYDAEIDLS 469

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSETLQA 543
            ++  L+ +L+   P+G  N  P+F           + +     HL+   +  +SE   A
Sbjct: 470 EIHPKLMRVLKQFEPFGPENMTPLFLAKGLTDSGYAKTLGADNEHLKAFVKQGNSENFGA 529

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F +      +  + +   +      L  N W+     QL++ D  
Sbjct: 530 IGFGLGN----KLDIVTNKNKFDAIFSLEENEWKDIITLQLQLRDIR 572


>gi|258515504|ref|YP_003191726.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779209|gb|ACV63103.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 907

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/579 (29%), Positives = 298/579 (51%), Gaps = 21/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W              IT++  +  I+A+++VNR + +++  K+F+   +  L  +P I
Sbjct: 5   KIWHIKENDLATQSI--ITKELGVSPILAQLMVNRGLGTVEQIKNFMEYDLSSL-NNPYI 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  KA  RI++A+  SEKI+I+GDYDVDG    AL++  L   + + N YIP RI +G
Sbjct: 62  LQDMQKAVNRIIEAVNRSEKILIYGDYDVDGITGTALLVGALRRLTDHVNYYIPHRIKEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ-GIDVIVIDHHQVKSEEIPAYA 193
           YG +   +EK   +G  LIITVDCG +  +A+ ++      D+I+ DHH+       A A
Sbjct: 122 YGLHKEAVEKAAGQGYSLIITVDCGISGKEAVDWSVQNTKTDIIITDHHEPPPVLPAALA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R D       L   GV   ++  +Y           +      LD+V L T+ DV
Sbjct: 182 VINPKRKDCEYPFKELAGIGVALKLVQAVYAAANMS-----SETWKEYLDIVCLGTIADV 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           VPL+G NR  V  GL    +    GL ALI+   +   IT+  +G+++ P +NA GR+G+
Sbjct: 237 VPLLGENRILVKYGLPYLTKTSKKGLIALIKASGLRGDITSGQVGFVLAPRLNAAGRLGD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             +   LL+++D  +   +A+ LD  N+ R+ +E A L++A   +  +    +Q+ V+V+
Sbjct: 297 PFMAVELLLTEDEAQANQIAVVLDEKNRKRKSVEDAALKEAIQMIEREI-SFKQSKVLVL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WHPG++GL+A+RL E++ +P  AI+ + + +G GS RSI GF++ + +        
Sbjct: 356 ASEEWHPGVIGLVASRLVERYYKPVLAIALDGE-QGKGSARSIPGFNLYQALEHC--GKN 412

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG +++R +          +A  ++   +  PV  +DG+ + + +   +I
Sbjct: 413 LSGYGGHTMAAGFSLKRESLDNFIREINVYADEVISEDLLVPVMNLDGIFSLNDITEQVI 472

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551
             +E   P+G  NP P+   P  ++ + + V     HL++    ++   +  I F +   
Sbjct: 473 AEIEKLAPFGQANPGPLLCCPEIQVVNFKGVGKEGEHLKIKIRKENG-FIDGIGFNLASY 531

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 M +  +R+++     +N W+G +   LR+ D  
Sbjct: 532 S----EMLATAERVNLAFVPEINEWQGKRHISLRIKDIQ 566


>gi|332883950|gb|EGK04230.1| single-stranded-DNA-specific exonuclease RecJ [Dysgonomonas mossii
           DSM 22836]
          Length = 575

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/581 (29%), Positives = 295/581 (50%), Gaps = 21/581 (3%)

Query: 16  FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           ++W    L  +   +   + +K  I  ++ ++L+ R +S  + A+ F +PS+R L  DP 
Sbjct: 3   YKWNYEALTTQQKEQRDELAKKLGISPVLCQLLIQRGISSAEEARKFFHPSLRDLH-DPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D DKA +RI +A+   ++I+I+GDYDVDG  +VAL+ +FL   + N + YIPDR  +
Sbjct: 62  LLPDMDKAIKRIEKALGQKQRILIYGDYDVDGTTAVALVYKFLRKFTTNLDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA ++GID I+ DHH        A A
Sbjct: 122 GYGISEQGIDYAEETGVKLIIALDCGIKANEKIDYAKSKGIDFIIGDHHMPDDVLPDAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++  RLD      HL   GV F ++  + +  + D       ++  LLDLVA++   D+
Sbjct: 182 VIDAKRLDSTYPYEHLSGCGVGFKLVQALAQSNKID-----FSEITDLLDLVAVSVASDI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312
           VP+ G NR     GL       + GLK +I+   ++   IT  ++ + IGP INA GR+ 
Sbjct: 237 VPITGENRVLTYFGLKQINSNPSLGLKGIIDICGLTYKNITVNDIIFKIGPRINASGRMM 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL+S   ++    +M +D  N +RR ++  + E+A   +  +  D+++   IV
Sbjct: 297 KGKEAVDLLLSSTIEDAREKSMNIDHYNDDRRELDKRITEEAIQFI-DENVDMKEKKSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WH G++G++A+RL EK+ RP+  ++ +  G   GS RS+ GFD+ K +     + 
Sbjct: 356 IYNETWHKGVIGIVASRLTEKYLRPAVVLT-KSQGLITGSARSVMGFDVYKAIEAC--KD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL   GGH  AAGL+++  N       F+  +  ++   +  P  ++D  L+   +N   
Sbjct: 413 ILENFGGHTYAAGLSLKEENLKEFKSRFEALSLEMIAPEMMRPQIRVDAELSFKEINQKF 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLA--HLQM-TFESQDSETLQAIAFRV 548
            + L +  P+G  N NP+F   N     + ++V     HL++   +   S  +  IAFR 
Sbjct: 473 TEDLAAFAPFGPENLNPIFVTCNVMDYGTSKLVGKDNVHLKLEMIDDTLSTPVNGIAFRQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             +          GK   +   L  N   G    QL V D 
Sbjct: 533 QDSS----DKVKSGKPFDICYTLEENTHNGKTNIQLYVKDI 569


>gi|325280371|ref|YP_004252913.1| single-stranded-DNA-specific exonuclease RecJ [Odoribacter
           splanchnicus DSM 20712]
 gi|324312180|gb|ADY32733.1| single-stranded-DNA-specific exonuclease RecJ [Odoribacter
           splanchnicus DSM 20712]
          Length = 574

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/586 (27%), Positives = 267/586 (45%), Gaps = 23/586 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RWV         +   +++K     ++A +L+ R ++  + A+ F  PS+ +L  DP +
Sbjct: 3   KRWVI-NTPPEATKIEELSKKLNCHPVIANLLLQRGITSSEQAQSFFYPSLNMLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV--NANMYIPDRIV 132
           + D DKA  R+ +AI   EKI+I+GDYDVDG  +V+L+ ++L H     N   YIPDR  
Sbjct: 61  MKDMDKAVERLDRAIAQDEKILIYGDYDVDGTTAVSLLYKYLKHHCNSDNLEYYIPDRYT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G  L++  DCG  + + ++YA ++ +D+I+ DHH        A 
Sbjct: 121 EGYGVSIKGIDYAAENGFSLMLITDCGIKAVEKVKYANSRQVDIIICDHHTPGDTLPEAI 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D       L   GV F ++                 +L  LLDL+ ++   D
Sbjct: 181 AVLDPQRPDCPYPYKWLSGCGVSFKLVQAHS-----LKHNLPMSELYKLLDLLCVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +VP+ G NR     GL       + GLK +I+   I   IT  ++ + IGP INA GR+ 
Sbjct: 236 IVPITGENRILAYFGLQQLNSNPSLGLKTIIKISGIDKEITINDIVFRIGPRINAAGRVE 295

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL +D+      +A  ++  N  R+ ++  + E+A   +  Q +        V
Sbjct: 296 SGRKSVELLTADEKCSAAGIASDINTFNDQRKKLDHDITEEAIRHI-NQSELEPSKKTTV 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A+RL E F RP+  ++ E +G   GS RS+EGFD+   +S   E  
Sbjct: 355 LFNANWHKGVIGIVASRLTESFYRPTIILT-ESNGLATGSARSVEGFDLYYAISQCSEF- 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L   GGH  AAGLT++  N       F++     +   + TP   ID  +  + +   L
Sbjct: 413 -LENYGGHKYAAGLTLKIENIEPFKQKFERIVRETIDDEMLTPQINIDAKIKLTDITPDL 471

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLA--HLQMTFESQDSETLQ--AIAFR 547
             ML+   P+G  N  PVF           + V     HL++              I F 
Sbjct: 472 YHMLQKFAPFGPNNTIPVFMTEKVTNFIGTKRVGRNNEHLKLVIVDDTRACNDRSGIGFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           +       +   + G    +   L  N + G    Q+ V D    E
Sbjct: 532 MGHL----YDKVNSGGFFDICYTLQENEFMGKNDIQMIVKDIRLRE 573


>gi|313204813|ref|YP_004043470.1| exonuclease recj [Paludibacter propionicigenes WB4]
 gi|312444129|gb|ADQ80485.1| exonuclease RecJ [Paludibacter propionicigenes WB4]
          Length = 574

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 286/583 (49%), Gaps = 21/583 (3%)

Query: 18  WVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           W+     E        + ++ +I  I++++LV R++ + + A+ F  P +  L  DP ++
Sbjct: 5   WIYRTLTEQQRETQNKLAEELSISPILSQLLVQRDILTFEEARSFFRPDLSNLH-DPFLM 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A  R+ +A+  +EKI+I+GDYDVDG  SVAL+ +FL     N   YIPDR  +GY
Sbjct: 64  ADMHNAVNRLTKAMQKNEKILIYGDYDVDGTTSVALVYKFLKQFYRNVAFYIPDRYNEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +   +LII +DCG  + + ++YA  +G+D I+ DHH   +   PA A++
Sbjct: 124 GISIQGIDFAADNDFKLIIALDCGIKAVEKVRYALEKGVDFIICDHHTPDAVLPPAVAVL 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D      HL   GV F ++         D        L  LLDL+AL+   D+VP
Sbjct: 184 DPKRADCTYPYKHLSGCGVGFKLMQAFAITNNID-----FSQLTPLLDLLALSIASDIVP 238

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           + G NR     GL       + GL+ ++E        IT  ++ + IGP INA GR+  +
Sbjct: 239 ITGENRILAFYGLKQINSNPSIGLQGILEVCGLKDKEITISDIVFKIGPRINASGRMKLA 298

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL+S D   ++  +  ++  N +R+ ++  + ++A A +      + + S+ VV 
Sbjct: 299 SEAVELLVSSDYLFVKEKSDTINEYNNDRKDLDKNITDEAIALIGADKRYLDRKSI-VVH 357

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G++G++A+RL E++ +PS  ++   +G   GS RS+ GFDI K +       +L
Sbjct: 358 KPDWHKGVIGIVASRLSEEYYKPSIVLT-NSNGFASGSARSVSGFDIYKAIDSC--RDLL 414

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGH  AAGL+++  N     + F+KF    +    T P   ID VL    +      
Sbjct: 415 ENFGGHMYAAGLSMKEENIPAFTERFEKFVAENILKEQTYPQIDIDAVLEFKDITPKFFR 474

Query: 495 MLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNL--AHLQMTFESQDS-ETLQAIAFRVYG 550
           +L+  GP+G GN  P+F   N     + R+V     HL++      S   +  IAFR++ 
Sbjct: 475 VLKQFGPFGPGNMKPIFVSKNVLDYGTSRLVGKEQEHLKLELVDSSSENVMNGIAFRMHE 534

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                  +      + +   +  N + G+   QL + D   VE
Sbjct: 535 YNDHLKALN----PLDICYTIEENSFNGNTSIQLMIRDIKVVE 573


>gi|77412804|ref|ZP_00789009.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae 515]
 gi|77161100|gb|EAO72206.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae 515]
          Length = 732

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/590 (31%), Positives = 288/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L+       +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALNMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ LI   NI    +  E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +       Q   V V
Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  DI    +F     
Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH+ AAG+T+E    G L      +       +       ID  L    +++  
Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + K+   RV+     HL++  E QD + L  +AF + G
Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           + L EF    + + + +   L VN W G+   QL + DA       F  +
Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568


>gi|315607973|ref|ZP_07882966.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae
           ATCC 33574]
 gi|315250442|gb|EFU30438.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae
           ATCC 33574]
          Length = 573

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/583 (27%), Positives = 282/583 (48%), Gaps = 22/583 (3%)

Query: 16  FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W          +A   + +K  +   +A++L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYQTPTPDERQAADELGEKLNMSPTLAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N   YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIGYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA + GID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDYAKETGVKLIIILDCGIKAVEEITYAKSLGIDFIICDHHVPDEVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD   +A   D+
Sbjct: 182 ILNPKRPDDSYPFKHLCGCGVGFKFMQGFAK-----NNDIAFSRLIPLLDFCTVAIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLK++I+   ++   I+  ++ + IGP INA GR+ 
Sbjct: 237 VPVMDENRILAFHGLKQLNQNPSIGLKSIIDICGLNGREISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  +      +A  ++  N+ R+ ++  M E+A  +++++ +  +  S IV
Sbjct: 297 NGRESVDLLVEREFPVALRMATHINEYNEQRKDIDKQMTEEA-NQIVSRLESQRHRSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDMATGSARSVTGFDVYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+  GGH  AAGLT++  +     D FQKF    +    T     ID +++   +N  L
Sbjct: 413 ILINFGGHTYAAGLTMKWEHVKEFRDRFQKFVEEHIEPEQTEATLNIDAMIDFKDINKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GN  P+F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 HTDLKRFAPFGPGNSKPLFCTCGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
             +           +   +   +  N ++ ++  QL++ D  P
Sbjct: 533 SAS----ARYIKSKRSFDIVYTIEDNVFKHNQ-VQLQIEDIRP 570


>gi|213963155|ref|ZP_03391413.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           sputigena Capno]
 gi|213954239|gb|EEB65563.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           sputigena Capno]
          Length = 564

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 168/581 (28%), Positives = 280/581 (48%), Gaps = 23/581 (3%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
            + W            + + Q+  I + +A +L  R ++    AKDF  P++  L  +P 
Sbjct: 2   NYTWNFKPLPPQ-ATVIQLQQELNISEPLAILLAQRGITTFQQAKDFFRPTLSQLH-NPF 59

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++     A  R+  A+ N+E I+I+GDYDVDG ++V+LM R+LS  +     Y+PDR  +
Sbjct: 60  LMKGMQAAVTRLDHALKNNETILIYGDYDVDGTSAVSLMERYLSTFTSKLFTYVPDRYSE 119

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++    +G  LII +DCG  + D +QYA  +GID I+ DHH+   +   A A
Sbjct: 120 GYGISFQGIDYAEAQGCTLIIALDCGIKAIDKVQYAKEKGIDCIIADHHRPSDQVPDAVA 179

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P + D       LC  G+ F +    +  L          +L+ LLDLVA+AT  D+
Sbjct: 180 VLDPQQADCPYPYKELCGCGLGFKLAQAYHEYL-----QRPFSELMPLLDLVAVATAADI 234

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           VP+ G NR  +  GL V  +Q + G+KAL         IT  ++ +   P INA GRI  
Sbjct: 235 VPMNGENRTLMYFGLEVINQQPSAGVKALF--GEHQGAITVSDVVFKAAPRINAAGRIEH 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D+++  + A ++D LN +R+ ++S + EQA  ++  + +  Q     VV
Sbjct: 293 GKYAVALLTEPDAEKALLKAQEIDELNTHRKELDSYIAEQALGQI--ESNGEQNRYTSVV 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+   +   D K   S RS++GFDI + +    +   
Sbjct: 351 LNEEWHKGVIGIVASRLIEHYYRPTIVFTKSGD-KYAASARSVQGFDIYEALEQCSQY-- 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT+    +    + F+      +   + TP   ID  L  S +     
Sbjct: 408 LEQFGGHKYAAGLTLLPEQYPLFKEAFETVVKQTINPELRTPKLSIDTALPLSKLTQKFY 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFE-SQDSETLQAIAFRVY 549
           ++L+   P+G  N  P+F   N       + +     HL++      ++    A+ F + 
Sbjct: 468 NILKQFEPFGPQNLPPLFYAENVVDTGFAKHIGKTNEHLKLCLREVGNTAYFDAVGFGLA 527

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  + + G    +   +  N W G    QL+V D  
Sbjct: 528 H----KLPLITSGTPFSIVYSVEENVWNGKVSLQLQVRDIR 564


>gi|77411730|ref|ZP_00788068.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae CJB111]
 gi|77162238|gb|EAO73211.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae CJB111]
          Length = 732

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ LI   NI    +  E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +       Q   V V
Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  DI    +F     
Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH+ AAG+T+E    G L      +       +       ID  L    +++  
Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + K+   RV+     HL++  E QD + L  +AF + G
Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNSAHLKLKLE-QDGQALDLVAFNM-G 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           + L EF    + + + +   L VN W G+   QL + DA       F  +
Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568


>gi|319745216|gb|EFV97535.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae ATCC 13813]
          Length = 732

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ LI   NI    +  E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +       Q   V V
Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  DI    +F     
Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH+ AAG+T+E    G L      +       +       ID  L    +++  
Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + K+   RV+     HL++  E QD + L  +AF + G
Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           + L EF    + + + +   L VN W G+   QL + DA       F  +
Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568


>gi|22537366|ref|NP_688217.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae 2603V/R]
 gi|25011329|ref|NP_735724.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae NEM316]
 gi|22534239|gb|AAN00090.1|AE014247_5 single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae 2603V/R]
 gi|24412867|emb|CAD46939.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 732

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAITYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ LI   NI    +  E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +       Q   V V
Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  DI    +F     
Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH+ AAG+T+E    G L      +       +       ID  L    +++  
Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + K+   RV+     HL++  E QD + L  +AF + G
Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           + L EF    + + + +   L VN W G+   QL + DA       F  +
Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568


>gi|325269072|ref|ZP_08135693.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           multiformis DSM 16608]
 gi|324988693|gb|EGC20655.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           multiformis DSM 16608]
          Length = 574

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/586 (27%), Positives = 282/586 (48%), Gaps = 22/586 (3%)

Query: 15  GFRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
            F+W       E  + A  + +K  I  I+A +L+ R ++ +  AK F  P +  L+ +P
Sbjct: 2   NFKWNYTPPTAEQEHTAAELGEKLGINPILAGLLIRRGITTESAAKRFFRPQLADLI-NP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D D A  R+  A+ + E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FLMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYD 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G +LII +DCG  + + + YA  QGID I+ DHH       PA 
Sbjct: 121 EGYGVSRKGIDFAKETGVRLIIILDCGIKAIEEIAYAKEQGIDFIICDHHVPDESMPPAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP R DD      LC  GV F  +    +     N       L+ LLD  A++   D
Sbjct: 181 AILNPKRPDDSYPFKDLCGCGVGFKFMQAFAK-----NNNIPFSRLIPLLDFCAVSIAAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +VP++  NR     GL    +  + GLKA+I+   ++   ++  ++ + IGP INA GR+
Sbjct: 236 LVPVVDENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRM 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+  +       A  +D  N+ R+ ++  M E+A  +++ + +  +  S I
Sbjct: 296 ENGKKSVDLLVEREYGMAFRQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + W  G++G++A+RL E + RP+  ++  ++    GS RS+ GFD+   +      
Sbjct: 355 VLYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+  GGH  AAGLT++  +       FQ +    +       +  ID V++   +   
Sbjct: 412 DLLLNFGGHTYAAGLTMKWSDVKEFRRRFQDYVETHIEPEQREAILDIDAVIDFKDITKK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
           L + L+   P+G GN  PVF   +     + +VV     H+++     + +  +  IAF 
Sbjct: 472 LHNDLKRFAPFGPGNTKPVFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              +           +   +   +  N ++     QL++ D  P +
Sbjct: 532 QSAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTD 572


>gi|189463814|ref|ZP_03012599.1| hypothetical protein BACINT_00147 [Bacteroides intestinalis DSM
           17393]
 gi|189438764|gb|EDV07749.1| hypothetical protein BACINT_00147 [Bacteroides intestinalis DSM
           17393]
          Length = 571

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/582 (28%), Positives = 277/582 (47%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E +  +  + Q+  I  I++ +LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPITPEQVETSQKLAQELGISPILSGLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSTKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAAAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 183 LNAKRLDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAFHGLKQLNSNPSVGLKAIIDVCGLTEKDITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSMALEKANQINQYNETRKDLDKTMTEEA-NQIVADLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F++F    +    T+ V  ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTERFEEFVSQNILPEQTSAVINIDAEIDFRDISPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   PYG  NP P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPYGPDNPKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIQP 570


>gi|85059969|ref|YP_455671.1| ssDNA exonuclease RecJ [Sodalis glossinidius str. 'morsitans']
 gi|84780489|dbj|BAE75266.1| single-stranded-DNA-specific exonuclease [Sodalis glossinidius str.
           'morsitans']
          Length = 578

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/568 (32%), Positives = 288/568 (50%), Gaps = 20/568 (3%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +  IP ++ R+ V R V    A   L   +R L+     LT  ++A   +++A+ +  +I
Sbjct: 20  EADIPPLLKRLYVQRGVC---AVGELERGVRGLLAY-HTLTGIEQAVDLLIRALADQRRI 75

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           M+ GD+D DGA S AL +  L        +  +P+R  DGYG +P ++E+    GAQLI+
Sbjct: 76  MVVGDFDADGATSTALTVLALRQMGAQTIDFLVPNRFEDGYGLSPEVVEQAAARGAQLIL 135

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S+  +  A  +GI V++ DHH        A A+VNPN  D       L   GV
Sbjct: 136 TVDNGISSHAGVTLAHEKGIPVLITDHHLPGDTLPAAEAIVNPNLRDCTFASKSLAGVGV 195

Query: 215 VFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            F +++ +   L               L  LLDLVAL TV DVVPL   NR  V +GL  
Sbjct: 196 AFYLMLALRARLNDSGWFTQRGIAAPKLAELLDLVALGTVADVVPLDANNRILVHQGLSR 255

Query: 271 ARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            R  +  PG++AL E  N   + + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +
Sbjct: 256 IRAGRCRPGIRALAEVANRDITRLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLPQ 315

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLA 387
             MLA +LD LNQ RR +E  M  +A A   +   D Q       +  ++WH G+VG+LA
Sbjct: 316 ARMLAAELDALNQTRREIEHGMEAEALALCQSMARDEQAMPFGLAIYHEQWHQGVVGILA 375

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAG 445
           +R+KE+F RP  A +   +G   GSGRS+ G  +  ++        G+++K GGHAMAAG
Sbjct: 376 SRIKERFHRPVIAFAPAGEGVLKGSGRSVAGLHMRDLLERLDTLHPGMILKFGGHAMAAG 435

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+E   F R    F +     +   +   V   DG L    +++   ++L   GP+G G
Sbjct: 436 LTLEHAQFERFRQRFAELVDEWLDPAMLEGVIWSDGELAGQELSLTTAELLRDGGPWGQG 495

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
            P+P+F     ++ + R+V   HL++  E       L  IAF +      +    +    
Sbjct: 496 FPDPLFDGR-FRVLNQRLVGEKHLKLLLEPVAGGPMLDGIAFNIDSRLWPD----NSVHT 550

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +   L VN +RG++  QL +    P+
Sbjct: 551 VELAYRLEVNEFRGNRSLQLLIQHIWPL 578


>gi|325298689|ref|YP_004258606.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           salanitronis DSM 18170]
 gi|324318242|gb|ADY36133.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           salanitronis DSM 18170]
          Length = 574

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/585 (28%), Positives = 278/585 (47%), Gaps = 22/585 (3%)

Query: 15  GFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
            ++W      QE    A A+ ++  I  ++ R+L+ R ++    AK F  P +  L  DP
Sbjct: 2   NYKWNYQPPTQEEREAAKALAKEIGISPVLCRLLLERGITSAAEAKRFFRPQLNELH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  +A  R+ +A+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FLMKDMSRAVERLNKAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G +L+I +DCG  + + + YA  +GID I+ DHH       PA 
Sbjct: 121 EGYGVSKKGVDYAYETGVKLVIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDEVLPPAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP R D      HL   GV F  +          N       L  LLDLVA++   D
Sbjct: 181 AILNPKRHDASYPYSHLSGCGVGFKFMQAFA-----LNNGIEFQQLTPLLDLVAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLKA+I+        +T  ++ + IGP INA GRI
Sbjct: 236 IVPVMGENRVLAYHGLKQLNTNPSIGLKAIIDVCGLSDRELTMSDIIFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LLI  D       A +++  N+ R+ ++  M E+A  K++ Q  ++ Q   I
Sbjct: 296 QNGKEAVDLLIEKDFPLALQKARQINQYNETRKDLDKNMTEEA-NKIVDQLANLSQRRSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WH G++G++A+RL E + RP+  ++   +    GS RS+ GFD+ K + +    
Sbjct: 355 VIYNEAWHKGVIGIVASRLTEIYYRPAVVLTRTNE-LATGSARSVSGFDVYKAIEYC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+++    +    T+    ID  L+   +   
Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFARRFEEYVTRHILPEQTSATIDIDAQLDFRDITSK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
               L+   P+G  NP PVF   N     + +VV     H+++     + +  +  IAF 
Sbjct: 472 FFFDLKKFNPFGPENPKPVFCTMNVFDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +       +  ++   +  N  +     QL++ D  P 
Sbjct: 532 QS----SQARFIKTKQSFNICYTIEENTHK-RGDVQLQIEDIKPS 571


>gi|126653977|ref|ZP_01725814.1| YrvE [Bacillus sp. B14905]
 gi|126589534|gb|EAZ83676.1| YrvE [Bacillus sp. B14905]
          Length = 773

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/593 (30%), Positives = 297/593 (50%), Gaps = 27/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +S  RW     +  +N   A+     +  I A++L  R   +   A+  LN +   +  D
Sbjct: 3   LSKKRWQV--ERPDVNLVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANVH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P ++    +A  RI QA+ N EKI+++GDYD DG  S  +M+  L +   + +  IP+R 
Sbjct: 60  PFLMHGMTEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLNLGADVSFKIPNRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           + GYGP+ +L  +   EG QLIITVD G +  + ++ A   G+DVIV DHH+   E  PA
Sbjct: 120 IHGYGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +++P   +     G L   GV F +   +Y  L              LL+ VA+ TV 
Sbjct: 180 DIILHPRIPEGHYPFGELAGVGVAFKLAHALYGELP-----------THLLEYVAIGTVA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL+  NR  V +G+   RR  +P ++A+ +  +     I  E +G+  GP  NA GR
Sbjct: 229 DLVPLVDENRYLVKRGIEEMRRSLSPWVQAMCDIASTEQAKINEETIGFYFGPRFNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G+++ G  LL+++DS +   LA +L+  N  R+ +  ++ ++A A +  +   I  + V
Sbjct: 289 LGDASPGVELLMAEDSAKATALAKQLNACNTERKDIVKSITDEAIALIEAE-KKISDSLV 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +VV G+ W+ G+VG++A+RL E++ RP+  +S   + G   GS RSIEGF +      A 
Sbjct: 348 LVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIEGFHLY--NELAK 405

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L       A   +     TPV  ID  L+   ++
Sbjct: 406 NRDILPHFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEQLTPVVHIDIPLSLDEIS 465

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
              I+ + + GPYG   P PV+   + ++ S+R +     H++M   +   + L ++ F 
Sbjct: 466 ADAIEEISTLGPYGTDFPKPVYVLEDVEISSMRKIGAAENHIKMEL-TNGYDKLDSVGF- 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             G    E    + G ++   G L +N W+G K+ Q  + D    E   F  +
Sbjct: 524 HKGHLHDEL---TYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIR 573


>gi|330828612|ref|YP_004391564.1| Single-stranded-DNA-specific exonuclease RecJ [Aeromonas veronii
           B565]
 gi|328803748|gb|AEB48947.1| Single-stranded-DNA-specific exonuclease RecJ [Aeromonas veronii
           B565]
          Length = 576

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 281/564 (49%), Gaps = 19/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ ++  +R V        L  S   L+P P  L   ++A   + +A+   ++I+I 
Sbjct: 20  LHPLLRQIFASRGVEDPAL---LERSASQLLP-PQRLYGMEQAVPLLAEALTAQKRILIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      + +  +P+R   GYG  P ++E  +  GA+ +ITVD
Sbjct: 76  GDFDCDGATSSALCVLALRAMGGRHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A   G+ V+V DHH    E   A A+VNPN+         L   GV F 
Sbjct: 136 NGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGCDFPSKSLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LRQ            ++   LDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 196 LMAALNTHLRQLGWFERQGLRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRA 255

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL++        +TA +LG+ +GP +NA GR+ + +LG   L+ DD      
Sbjct: 256 GRCRPGIQALVDVSGRDGRRLTAADLGFALGPRLNAVGRLDDMSLGVACLLCDDLNLARQ 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA ++D LNQ R+ +E  M ++A A +   +  D +  S IV+  + WH G+VGL+A+++
Sbjct: 316 LAAEMDSLNQERKEIEQGMQQEALATLEQVRFRDGEVPSGIVLHRNEWHQGVVGLVASKV 375

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEK+ RP  A +   + +  GSGRSI G  +   +        G++ K GGHAMAAGLT+
Sbjct: 376 KEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTL 435

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
            + N       F+     +V   + T V   DG L    +N+ L +++ ++GP+G   P 
Sbjct: 436 PKANIEAFGRAFEAVISELVTPELLTGVLLTDGELLPDELNLELAELIRASGPWGQAFPE 495

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           P+F      L   R+V   HL+M   +     + AIAF V      +  +    KR+ + 
Sbjct: 496 PLFDGEFV-LVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWPDATV----KRVRLV 550

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN WRG++  QL V      
Sbjct: 551 YRLDVNEWRGNRSVQLLVEHLEAA 574


>gi|218960658|ref|YP_001740433.1| putative ssDNA exonuclease, 5'--> 3'-specific [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729315|emb|CAO80226.1| putative ssDNA exonuclease, 5'--> 3'-specific [Candidatus
           Cloacamonas acidaminovorans]
          Length = 574

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/582 (30%), Positives = 295/582 (50%), Gaps = 20/582 (3%)

Query: 15  GFRWVSL--LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
             +W+     G+E       ++ +  +P +VA +L  + + +++ A++F  PS+  L  D
Sbjct: 3   NKKWLIPSPPGKEINPEIEKLSAEFKLPRLVAELLYRKGIKTVNSAQEFFKPSMDNLY-D 61

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +  D +KA +RI++AI + EKI I+GDYDVDG  + AL+   L     N + YIP R+
Sbjct: 62  PYLFPDMEKAVQRILRAIDSKEKITIYGDYDVDGTTATALLYLGLKRIGANIDFYIPHRM 121

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           +DGYG +   ++     G+ LII+VDCG  + + +    + G+++I+ DHH  K E  PA
Sbjct: 122 IDGYGLSLGSLDALRENGSSLIISVDCGVNAIEEINAINSMGMEIIITDHHNPKDELPPA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A++NP          HL   GV + +L+ IY  L  D       + L  +DLVA+ T+ 
Sbjct: 182 FAIINPKLPGTKYPYEHLAGVGVAYKLLMAIYNNLGID----SAENKLKYMDLVAVGTIA 237

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR +   GL     + N GL AL++   ++   +   ++ + I P INA GR
Sbjct: 238 DIVPLTSENRIFASIGLQHLIEKKNLGLNALVQISGLNQKNLDTTDIVFGIAPRINAAGR 297

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G +++   LLIS D  +   LA  ++  N  R+  +    ++A   +  +  D+QQ S 
Sbjct: 298 MGSASVSVELLISTDEAKSMELAEIIEHQNSLRQQEDQKTFQEACDIIEKKYKDLQQTSC 357

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV  D WHPG++G++A++L EK+ RP   ISF++ G G GSGRS+  FD+    +    
Sbjct: 358 MVVSSDDWHPGVIGIVASKLVEKYYRPVIMISFKD-GFGSGSGRSVADFDL--FEALKQT 414

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E  L   GGH  A GLT+ +    R  +   +F    +      P  +ID  +    +N 
Sbjct: 415 EHNLHSFGGHKYAVGLTIYQEYLDRFENELTRFVSENLRLEQIQPPLQIDAEIELYNINN 474

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVY 549
            L+D LE   P+G  N  PVF   N  + S    V   HL++            I F + 
Sbjct: 475 TLLDALEHFAPFGPDNTRPVFMTRNVTIASYPYNVGRNHLKLKVVK------DGIYFNLI 528

Query: 550 GTPLGEFL-MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           G  LG++L +  +  ++ +   L  N +  +   Q ++ D  
Sbjct: 529 GYNLGDYLPLLKKNGKLDIAYTLEYNRFGNNLTIQGKLKDLQ 570


>gi|77407833|ref|ZP_00784586.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae COH1]
 gi|77173580|gb|EAO76696.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae COH1]
          Length = 732

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ LI   NI    +  E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +       Q   V V
Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  DI    +F     
Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH+ AAG+T+E    G L      +       +       ID  L    +++  
Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + K+   RV+     HL++  E QD + L  +AF + G
Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           + L EF    + + + +   L VN W G+   QL + DA       F  +
Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568


>gi|188995866|ref|YP_001930118.1| single-stranded-DNA-specific exonuclease [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595546|dbj|BAG34521.1| single-stranded-DNA-specific exonuclease [Porphyromonas gingivalis
           ATCC 33277]
          Length = 584

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/590 (29%), Positives = 271/590 (45%), Gaps = 27/590 (4%)

Query: 15  GFRWVSLLGQEGINRALAI-TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
            + W              I  ++  +  +V  +L  R + S++ AK F  P +  L  DP
Sbjct: 2   NYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPD 129
            ++ D DKA  R+ +A+   EKIMI+GDYDVDG  +VAL+ ++L          + YIPD
Sbjct: 61  FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD 120

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R  +GYG +   ++   + G +LII +DCG  + + + YA +  ID I+ DHH       
Sbjct: 121 RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP 180

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
            A A+++  R D+     HL   GV F  +    R             LL LLDLVA++ 
Sbjct: 181 DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYARS-----NNLPESKLLPLLDLVAVSI 235

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAG 308
             D+VP++G NR     GL    ++   GL+A+I+        I   ++ + IGP INA 
Sbjct: 236 ASDIVPIMGENRILAYYGLRQLNKRPCLGLQAIIDVCGLKKRRIDMNDIVFKIGPRINAS 295

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+        LL+S D+ E +     +D  N  RR ++  + EQA   +          
Sbjct: 296 GRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELS--DVDK 353

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            ++V+    WH G++G++A+R+ E++ RP+  ++   D    GS RS+ GFD+ K +   
Sbjct: 354 KILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVYKAIEHC 412

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +LV  GGH  A+GLT++  N          +A   V   +  P   +D  ++   V
Sbjct: 413 --KDLLVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEV 470

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNL--AHLQMTFESQDSET--LQA 543
           N  L+D L+  GP+G  N  PVF           R V     HL++       E   +  
Sbjct: 471 NYKLLDNLKRMGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGSGERHPVSG 530

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           IAF   G        + +     +   +  N + G+K  QL V D  P E
Sbjct: 531 IAFNQAGHC-----NEIKNGSFRLCYTIEENEFNGNKSLQLLVRDIKPEE 575


>gi|34539926|ref|NP_904405.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           gingivalis W83]
 gi|34396237|gb|AAQ65304.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           gingivalis W83]
          Length = 584

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/590 (29%), Positives = 271/590 (45%), Gaps = 27/590 (4%)

Query: 15  GFRWVSLLGQEGINRALAI-TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
            + W              I  ++  +  +V  +L  R + S++ AK F  P +  L  DP
Sbjct: 2   NYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPD 129
            ++ D DKA  R+ +A+   EKIMI+GDYDVDG  +VAL+ ++L          + YIPD
Sbjct: 61  FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD 120

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R  +GYG +   ++   + G +LII +DCG  + + + YA +  ID I+ DHH       
Sbjct: 121 RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP 180

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
            A A+++  R D+     HL   GV F  +    R             LL LLDLVA++ 
Sbjct: 181 DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYARS-----NNLPESKLLPLLDLVAVSI 235

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAG 308
             D+VP++G NR     GL    ++   GL+A+I+        I   ++ + IGP INA 
Sbjct: 236 ASDIVPIMGENRILAYYGLRQLNKRPCLGLQAIIDVCGLKKRRIDMNDIVFKIGPRINAS 295

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+        LL+S D+ E +     +D  N  RR ++  + EQA   +          
Sbjct: 296 GRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELS--DVDK 353

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            ++V+    WH G++G++A+R+ E++ RP+  ++   D    GS RS+ GFD+ K +   
Sbjct: 354 KILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVYKAIEHC 412

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +LV  GGH  A+GLT++  N          +A   V   +  P   +D  ++   V
Sbjct: 413 --KDLLVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEV 470

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNL--AHLQMTFESQDSET--LQA 543
           N  L+D L+  GP+G  N  PVF           R V     HL++       E   +  
Sbjct: 471 NYKLLDNLKRMGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGSGERHPVSG 530

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           IAF   G        + +     +   +  N + G+K  QL V D  P E
Sbjct: 531 IAFNQAGHC-----DEIKNGSFRLCYTIEENEFNGNKSLQLLVRDIKPEE 575


>gi|147677378|ref|YP_001211593.1| hypothetical protein PTH_1043 [Pelotomaculum thermopropionicum SI]
 gi|146273475|dbj|BAF59224.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 946

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 175/578 (30%), Positives = 289/578 (50%), Gaps = 21/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W        + +     +K  I  + A++L+NR + +++  + F+   +  L   P +
Sbjct: 53  KIWRVKTPAPVLCQI--FARKLDISPVTAQLLINRGIYTVEQGRAFIGSELSRLHR-PEL 109

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D A  RI+QA+   EKI+I+GDYD DG  + AL+++       +A+ YIP R+ +G
Sbjct: 110 LRDMDTAVARILQAVEAGEKILIYGDYDADGITATALLIKVFRRLGADADYYIPGRLEEG 169

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++K + +G  L++TVDCG ++    ++A   G+D+I+ DHH+   E   A A+
Sbjct: 170 YGVHLEPLQKALQKGTGLVVTVDCGISALAEAEWARANGLDLIITDHHEPPPEIPNACAV 229

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D       L   G+   +   +                L  LDL  L TV D+V
Sbjct: 230 INPKRPDCSYPFKELAGVGLALKLAQALLERTGAGE-----KAWLDYLDLACLGTVADIV 284

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR  V  GL      G+PGL+AL+    I    ++   +GY + P +NA GRIG 
Sbjct: 285 PVQGENRILVKHGLPRLAGTGSPGLQALMAVSGIKGDNLSPREVGYALAPRLNAAGRIGT 344

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             +G RLL++DD +E   LA +L+  NQ R+ +ES + E+A + +      + +A V V+
Sbjct: 345 PQMGVRLLMTDDLEEARHLAGELNRYNQVRQKIESKVFEEALSLLEAD-PGLAEAPVPVL 403

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK  RP   IS E +  G GS RSI GF++ K +S   E   
Sbjct: 404 ASPGWHAGVIGIVASRLAEKLYRPVLLISLEGE-LGRGSARSIPGFNVYKALSHCHEY-- 460

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHA+AAG  VE      L      +A   V A    P  ++DG++    V+  L+
Sbjct: 461 LLEYGGHALAAGFKVEGGMVEDLRKKINGYARTAVEAEKLIPYLELDGIVEVGQVSEELV 520

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G  NP+P+       +   RV+     HL++    ++   +  I F +   
Sbjct: 521 NEIKLLSPFGPSNPDPLLCCLEAFVLESRVIGKGSSHLKLRLRGKN-TVMDGIGFNLG-- 577

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                 + +  +++ +     +N + G +  QL V D 
Sbjct: 578 --AYAEVLATAEKVDLAFVPGINEYNGRRSLQLEVKDL 613


>gi|330447416|ref|ZP_08311065.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491607|dbj|GAA05562.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 574

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/562 (32%), Positives = 281/562 (50%), Gaps = 20/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP I+ R+  +R ++ D     L    + L+ +   L   + A + +  A+ N+ +I+I 
Sbjct: 19  IPPILQRIYASRGINND---AELERGAKGLL-NYNQLYGMESAVQLLSDALANNTRIIIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGCQNVDYLVPNRFDDGYGLSPEVVEQAQARGAELIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A  +GI V+V DHH        A A+VNPN  +       LC  GV F 
Sbjct: 135 NGVSSISGVAAAKEKGIKVLVTDHHLPGDTLPIADAIVNPNLNECGFPSKALCGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR +           +L  LLDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 195 LMLALRAELRNNGWFEQQGIAMPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++ALIE  N     +   +LG+ +GP INA GR+ + + G  LL+ D+ Q    
Sbjct: 255 GKCRPGIQALIEVANRDPSRLVTSDLGFALGPRINAAGRLDDMSFGVELLLCDNIQAARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390
           +A +LD LNQ R+ +E  M ++A A       + Q     +V     WH G++G+LA+R+
Sbjct: 315 MASELDGLNQTRKEIEQGMKDEALAICERLKFNQQNMPYGLVLFQRDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           K+K+ RP  A +   +G+  GS RSI G  +   +        G+++K GGHAMAAGLT+
Sbjct: 375 KDKYHRPVIAFADAGNGEIKGSCRSIAGLHMRDALDLVDTQNPGMILKFGGHAMAAGLTI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
                      F     +++       V   DG L +  +N+ + ++L + GP+G   P 
Sbjct: 435 PEDKLDAFSKAFDAVVRSVLDEDALKGVLLTDGELGSHELNLEVAEILRAGGPWGQQFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   ++V   HL+M  E       + AIAF V      +    +  +++ +
Sbjct: 495 PSFDGT-FRLLHQKLVGGKHLKMMVEPLNGGSVIDAIAFNVDVKRWPD----ASVQQIEL 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589
              L VN +RG++  QL V   
Sbjct: 550 VYRLDVNEYRGNRSVQLMVEHL 571


>gi|76786929|ref|YP_329907.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae A909]
 gi|77405405|ref|ZP_00782499.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae H36B]
 gi|76561986|gb|ABA44570.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae A909]
 gi|77175987|gb|EAO78762.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           agalactiae H36B]
          Length = 732

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNESVYKYFIEQQGVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ LI   NI    +  E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +       Q   V V
Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  DI    +F     
Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH+ AAG+T+E    G L      +       +       ID  L    +++  
Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMGQKKTLTIDSELRFDELSLDT 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + K+   RV+     HL++  E QD + L  +AF + G
Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           + L EF    + + + +   L VN W G+   QL + DA       F  +
Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568


>gi|169829358|ref|YP_001699516.1| single-stranded-DNA-specific exonuclease recJ [Lysinibacillus
           sphaericus C3-41]
 gi|168993846|gb|ACA41386.1| Single-stranded-DNA-specific exonuclease recJ [Lysinibacillus
           sphaericus C3-41]
          Length = 773

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/593 (30%), Positives = 297/593 (50%), Gaps = 27/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +S  RW     +  +    A+     +  I A++L  R   +   A+  LN +   +  D
Sbjct: 3   LSKKRWQV--ERPDVELVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANVH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P ++    +A  RI QA+ N EKI+++GDYD DG  S  +M+  L     N +  IP+R 
Sbjct: 60  PFLMHGMAEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLDLGANVSFKIPNRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           + GYGP+ +L  +   EG QLIITVD G +  + ++ A   G+DVIV DHH+   E  PA
Sbjct: 120 IHGYGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +++P   +     G L   GV F +   +Y  L              L++ VA+ TV 
Sbjct: 180 DIILHPRLPEGHYPFGELAGVGVAFKLAHALYGELP-----------THLIEYVAIGTVA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL+  NR  V +G+   RR  +P ++A+ +  +     I+ E +G+  GP +NA GR
Sbjct: 229 DLVPLVDENRYLVKRGIEEMRRSLSPWVQAMCDIASTEQAKISEETIGFYFGPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +GE++ G  LL+++DS +   LA +L+  N  R+ +   + E+A A + ++   I  + V
Sbjct: 289 LGEASPGVELLMAEDSVKATALAKQLNASNTERKDIVKNITEEAIALIESE-KKISDSLV 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +VV G+ W+ G+VG++A+RL E++ RP+  +S   + G   GS RSI+GF +      A 
Sbjct: 348 LVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIDGFHLY--NELAK 405

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L       A   +     TPV  ID  L+   ++
Sbjct: 406 NRDILPHFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEHLTPVVHIDIPLSLDEIS 465

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
              I+ + S GP+G   P PV+   + ++ S+R +     H++M   +   + L ++ F 
Sbjct: 466 ADAIEEIASLGPFGTDFPKPVYVLEDVEISSMRKIGAAENHIKMEL-TNGCDKLDSVGF- 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             G    E    + G ++   G L +N W+G K+ Q  + D    E   F  +
Sbjct: 524 HKGHLHDEL---TYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIR 573


>gi|255011348|ref|ZP_05283474.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fragilis
           3_1_12]
 gi|313149162|ref|ZP_07811355.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides fragilis
           3_1_12]
 gi|313137929|gb|EFR55289.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides fragilis
           3_1_12]
          Length = 572

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 168/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W      QE    + A+ Q+  I  ++ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITQEQAETSRALAQELGISPVLGQLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+  A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLDL A++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++ +M E+A  K++ + + +     IV+
Sbjct: 298 GKEAVDLLIEKDFSTALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLVDRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F+ F    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|303229401|ref|ZP_07316191.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515937|gb|EFL57889.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 664

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 191/580 (32%), Positives = 300/580 (51%), Gaps = 24/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
            RW  +           + ++  +  IVAR++VNRN+  D    FL  +++ L+ DP  L
Sbjct: 4   KRWHIMPRNVEKEN--TLIRELGVNPIVARLMVNRNIDSDEGHRFLEGTLKDLL-DPFTL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D + A   I++ I   + I+++GDYDVDG  + +L+ RFL       + YIP+R  +GY
Sbjct: 61  KDMETAVALILETIEAEKSIVVYGDYDVDGITATSLLYRFLVKMGARVSYYIPERQSEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++  I++GA L+ITVDCG +SYD ++   ++ ID+I+ DHH    +  PA A++
Sbjct: 121 GLNLEALDHIISDGASLVITVDCGISSYDIVEAVCDR-IDIIITDHHTAPPQIPPARAVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           N  + D      +L   GV F +   ++  LRQ          L  LD+VAL TV DVVP
Sbjct: 180 NHKQPDCPYRDKNLSGVGVAFKLCQALW--LRQCG-----EWYLDDLDIVALGTVADVVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V  GL       N G+  LI+        ITA ++G+ + P +NA GR+  +
Sbjct: 233 LVGENRIIVQAGLKKMNELPNLGIDKLIDVAGLHDKTITAGHIGFTLAPRLNAAGRVTHA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++DD    E +A +L   N  R+ +E ++ E+A A V  Q        V VV 
Sbjct: 293 TRAVELLVTDDVDLAETIAQELQETNMERQEIERSIHEEARANVAAQGHLA--GYVTVVA 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ WHPG++G++A+RL E+F +P+  IS  ++G G GS RSIEGF+I   + F   E IL
Sbjct: 351 GENWHPGVIGIVASRLVEEFYKPTLVIS-IDNGVGKGSCRSIEGFNIYNALKFC--EDIL 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGHA AAG +++      L     ++    V      PV  ID  L    +++ ++D
Sbjct: 408 IQFGGHAAAAGFSIDASRIDELRQRLTEYCKAHVSPDEYIPVVSIDATLPVDDIDVDIVD 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            + +  PYG GN  P+F   + K+Q I ++     H ++   + +  ++ AIA+      
Sbjct: 468 RVSALEPYGMGNSTPIFGVMDAKVQDIMLMGQLKNHCKVILATANG-SVDAIAWNRPDL- 525

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              F    +G  + V   L  N W+G    QL + D  P+
Sbjct: 526 ---FRHIFQGMNVKVAFTLQKNEWQGFVSPQLMIQDIEPI 562


>gi|320540118|ref|ZP_08039773.1| ssDNA exonuclease, 5' --> 3'-specific [Serratia symbiotica str.
           Tucson]
 gi|320029784|gb|EFW11808.1| ssDNA exonuclease, 5' --> 3'-specific [Serratia symbiotica str.
           Tucson]
          Length = 576

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/565 (31%), Positives = 277/565 (49%), Gaps = 19/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L  S++ ++P    L+  D A   + QA+ +   IM+
Sbjct: 21  NLPPLLRRLYALRGVQGEQE---LERSVKGMLP-WQQLSGIDTAVGILEQALVDCRSIMV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
            GD+D DGA S AL +  L     + +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 77  LGDFDADGATSTALTVLALRSMGGSVDYLVPNRFEDGYGLSPEVVEQAAARGAELIVTVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A   G+ V+V DHHQ       A A+VNPN          L   GV F 
Sbjct: 137 NGVSSHAGVDVAHANGMQVLVTDHHQPGETLPAAEAIVNPNLRGCEFPSKSLAGVGVAFY 196

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 197 LMLALRARLRDSGWFAQRALATPNLAELLDLVALGTVADVVPLDTNNRILVYQGLHRIRA 256

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E        + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +  M
Sbjct: 257 GKCRPGIRALLEVAKRDARQLVASDLGFALGPRLNAAGRLDDMSVGVALLLSDDIAQARM 316

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA  LD LNQ RR +E  M  +A       +    +    + +    WH G+VG+LA+R+
Sbjct: 317 LANDLDTLNQTRREIEQGMQIEALHLCDQLERTSTELPYGLAMYHPEWHQGVVGILASRI 376

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++  GGHAMAAGL++
Sbjct: 377 KERFHRPVIAFAPVGDGILKGSGRSVAGLHMRDALERLDMLSPGLMMTFGGHAMAAGLSL 436

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +   V   DG L+   +++   ++L   GP+G   P 
Sbjct: 437 EEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELSMQELSLTTAELLRDGGPWGQAFPE 496

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + +
Sbjct: 497 PTFDGR-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVEL 551

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  QL +    P 
Sbjct: 552 AYKLDINEFRGNRNVQLLIQHLWPH 576


>gi|152976827|ref|YP_001376344.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025579|gb|ABS23349.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cytotoxicus
           NVH 391-98]
          Length = 779

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + + R +  +    DF N +      DP +L
Sbjct: 7   RWKEKTYNE--ELVRELASKLQLSPLVVSLFLGRGLDTEDKIMDFFN-TAEQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ QAI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVKQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN          G  LIITVD G  +    Q A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHQAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+++ P INA GR+ ++
Sbjct: 233 LHGENRLIVQRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFLLAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A  +V  +    +   V+V+ 
Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIIEVECKYPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S + E     GS RSIEGFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDSEKQIAKGSARSIEGFDL--FANLSDCRDL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A+ ++      P+  ID V     V ++ I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQANAVLVEEDFIPITTIDAVCKVEDVTLSAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  +  L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPCIAVKDADLESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G + +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|299535667|ref|ZP_07048988.1| single-stranded-DNA-specific exonuclease recJ [Lysinibacillus
           fusiformis ZC1]
 gi|298728867|gb|EFI69421.1| single-stranded-DNA-specific exonuclease recJ [Lysinibacillus
           fusiformis ZC1]
          Length = 776

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/593 (30%), Positives = 291/593 (49%), Gaps = 27/593 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +S  RW     +       A+     +  I A++L  R   +   A+  LN +   +  D
Sbjct: 3   LSKKRWQV--ERPDATLVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANIH-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P ++    +A  RI QA+ N EKI+++GDYD DG  S  +M+  L     + +  IP+R 
Sbjct: 60  PFLMHGMAEAVARIEQALENGEKILVYGDYDADGVTSTTVMLHVLLDLGADVSFKIPNRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           + GYGP+ +L  +   EG QLIITVD G +  + ++ A   G+DVIV DHH+   E  PA
Sbjct: 120 IHGYGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGMDVIVTDHHEPGEELPPA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +++P   +     G L   GV F +   +Y  L              L++ VA+ TV 
Sbjct: 180 DIILHPRIPEGQYPFGELAGVGVAFKLAHALYGELP-----------SHLIEFVAIGTVA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL+  NR  V +G+   RR  +P ++AL +  +     IT E +G+  GP  NA GR
Sbjct: 229 DLVPLVDENRYLVKRGIQEMRRSLSPWVQALCDIASTEQTKITEETIGFYFGPRFNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +GE+  G  LL+++D+ +   LA KL+  N  R+ +  ++ ++A A +    + I  + V
Sbjct: 289 LGEAAPGVELLMAEDNAKATALAKKLNACNTERKDIVKSITDEAIALIEAD-EKIGHSLV 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +VV G+ W+ G+VG++A+RL E + RP+  +S   E G   GS RSIEGF +      A 
Sbjct: 348 LVVAGEGWNAGVVGIVASRLVELYYRPTIVLSLDPEKGMAKGSARSIEGFHLY--NELAK 405

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              IL   GGH MAAG+T+   +   L       A   +     TPV  ID  L+   ++
Sbjct: 406 NRDILPHFGGHPMAAGMTLSLEHVDELRTRLDAQARACLTEEQLTPVVHIDIPLSIDEIS 465

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFR 547
              I+ + + GP+G   P PV+   + ++ S+R +     H++M   +   + L ++ F 
Sbjct: 466 ADAIEEISTLGPFGTDFPKPVYVLEDVEIASMRKIGAGENHIKMEI-TNGYDKLDSVGFN 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       + G ++   G L +N W+G K+ Q  + D    E   F  +
Sbjct: 525 KGHLH----DELTYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIR 573


>gi|253566348|ref|ZP_04843802.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_2_5]
 gi|251945452|gb|EES85890.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_2_5]
 gi|301164670|emb|CBW24229.1| putative single-stranded-DNA-specific exonuclease [Bacteroides
           fragilis 638R]
          Length = 572

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W      QE    + A+ Q+  I  ++ R+LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITQEQAEISRALAQELGISPVLGRLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+  A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLDL A++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNGNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++ +M E+A  K++ + + +     IV+
Sbjct: 298 GKEAVDLLIEKDFSAALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F+ F    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|262384491|ref|ZP_06077625.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_33B]
 gi|301309112|ref|ZP_07215056.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           20_3]
 gi|262293784|gb|EEY81718.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_33B]
 gi|300832794|gb|EFK63420.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           20_3]
          Length = 574

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/582 (29%), Positives = 286/582 (49%), Gaps = 21/582 (3%)

Query: 17  RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           +W      +E +++   +  +     ++  +LV R ++  + AK F  PS+  L  DP +
Sbjct: 4   KWNFQTPSEEELHKRDQLVAELGFSPVICLLLVQRGITSIEEAKKFFKPSLNDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA RR+ +A+ N EKI+I+GDYDVDG  +V+L+ ++L   S   + YIPDR  +G
Sbjct: 63  MPDMDKAVRRLNKALGNKEKILIYGDYDVDGTTAVSLVFKYLRPYSSTLDFYIPDRYDEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  L+I++DCG  + + ++YA  +GID I+ DHH   +    A A+
Sbjct: 123 YGISYKGIDYAAENGVSLVISLDCGIKAIEKIEYAKEKGIDFIICDHHMPDATLPDAVAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  R D +    HL   GV F  +    +     N  P +  L  LL+L A++   D+V
Sbjct: 183 LDAKRSDSIYPYEHLSGCGVGFKFMQAFAK----SNNFPFSD-LEKLLELTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR     GL       + GLK +I+        IT  ++ + IGP INA GR+  
Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLTGKEITISDIVFKIGPRINASGRMMN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL+S DS      +  ++  N+ RR ++  + ++A A V+ + +++     IVV
Sbjct: 298 GKEAVELLLSKDSASAREKSESINQYNEERRELDKKITDEANA-VIDEVENMDDRKAIVV 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK+ RP+  ++   +    GS RS+ GFDI K +       +
Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL++   N     + F K A   +      P   ID +L+   +N   +
Sbjct: 414 LENFGGHTYAAGLSLREENLEAFTERFLKIASEEIIPEQMIPQIDIDAILDLKEINQKFV 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTFESQDSET-LQAIAFRVY 549
           + L+   P+G  N  PVF     K   + ++V     HL++     +S T + AIAF ++
Sbjct: 474 NDLKKMSPFGPDNQKPVFCSLGVKDYGTSKLVGKELEHLKLELIDGNSSTPMHAIAFGMH 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        K  ++   +  N + G+   QL + D  P
Sbjct: 534 RHN----DHIKGMKPFNICYTVEENTYNGNTSIQLMIKDIKP 571


>gi|323344224|ref|ZP_08084450.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oralis
           ATCC 33269]
 gi|323094953|gb|EFZ37528.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oralis
           ATCC 33269]
          Length = 577

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/587 (27%), Positives = 276/587 (47%), Gaps = 22/587 (3%)

Query: 16  FRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W          +A   + +K  I  I+A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYEPPTPQEEQAAKELGEKLNINQILALLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDIAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNVDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++   + G +LI+ +DCG  + + + YA + GID I+ DHH        A A
Sbjct: 122 GYGVSKKGIDYAKDTGVKLIVILDCGIKAIEEIAYAKSLGIDFIICDHHVPDEVMPCAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F ++    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDSYPFKHLCGCGVGFKLMQAFAK-----NNGIPFSRLIPLLDFCAVSIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+   NR     GL    +  + GLKA+I+   ++   I+  ++ + IGP INA GR+ 
Sbjct: 237 VPVTDENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRDISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  ++  N+ R+ ++  M E+A  +++ + +  +  S IV
Sbjct: 297 NGKESVDLLVEKDFSSALTQAKHINEYNEQRKDIDKQMTEEA-NQIVAKLESQKHHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDFATGSARSVTGFDLYAAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+  GGH  A GLT+   +       FQ++    +          ID  ++   +   L
Sbjct: 413 ILINFGGHTYATGLTLRWNDVPEFRKRFQRYVEEHIQPEQIEANLNIDAQIDFKDITKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G  N  P+F   +     + +VV     H+++     + S  +  IAF  
Sbjct: 473 HNELKKFSPFGPCNTKPIFCTTDVYDYGTSKVVGRIQEHIKLELVDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             +           +   +   +  N ++     QL++ D  P E  
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIENNIFK-RNAVQLQIEDIRPTEDE 574


>gi|150008372|ref|YP_001303115.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides
           distasonis ATCC 8503]
 gi|255015620|ref|ZP_05287746.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_7]
 gi|256839338|ref|ZP_05544847.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides sp.
           D13]
 gi|298375012|ref|ZP_06984969.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_1_19]
 gi|149936796|gb|ABR43493.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides
           distasonis ATCC 8503]
 gi|256738268|gb|EEU51593.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides sp.
           D13]
 gi|298267512|gb|EFI09168.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_1_19]
          Length = 574

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/582 (29%), Positives = 286/582 (49%), Gaps = 21/582 (3%)

Query: 17  RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           +W      +E +++   +  +     ++  +LV R ++  + AK F  PS+  L  DP +
Sbjct: 4   KWNFQTPSEEELHKRDQLVAELGFSPVICLLLVQRGITSIEEAKKFFKPSLNDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA RR+ +A+ N EKI+I+GDYDVDG  +V+L+ ++L   S   + YIPDR  +G
Sbjct: 63  MPDMDKAVRRLNKALGNKEKILIYGDYDVDGTTAVSLVFKYLRPYSSTLDFYIPDRYDEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  L+I++DCG  + + ++YA  +GID I+ DHH   +    A A+
Sbjct: 123 YGISYKGIDYAAENGVSLVISLDCGIKAIEKIEYAKEKGIDFIICDHHMPDATLPDAVAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  R D +    HL   GV F  +    +     N  P +  L  LL+L A++   D+V
Sbjct: 183 LDAKRSDSIYPYEHLSGCGVGFKFMQAFAK----SNNFPFSD-LEKLLELTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR     GL       + GLK +I+        IT  ++ + IGP INA GR+  
Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLTGKEITISDIVFKIGPRINASGRMMN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL+S DS      +  ++  N+ RR ++  + ++A A V+ + +++     IVV
Sbjct: 298 GKEAVELLLSKDSASAREKSESINQYNEERRELDKKITDEANA-VIDEVENMDDRKAIVV 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK+ RP+  ++   +    GS RS+ GFDI K +       +
Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL++   N     + F K A   +      P   ID +L+   +N   +
Sbjct: 414 LENFGGHTYAAGLSLREENLEAFTERFLKIASEEIIPEQMIPQIDIDAILDLKEINQKFV 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTFESQDSET-LQAIAFRVY 549
           + L+   P+G  N  PVF     K   + ++V     HL++     +S T + AIAF ++
Sbjct: 474 NDLKKMSPFGPDNQKPVFCSLGVKDYGTSKLVGKELEHLKLELIDGNSSTPMHAIAFGMH 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        K  ++   +  N + G+   QL + D  P
Sbjct: 534 RYN----DHIKGMKPFNICYTVEENTYNGNTSIQLMIKDIKP 571


>gi|313500298|gb|ADR61664.1| Single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           BIRD-1]
          Length = 569

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   +     +V+AI   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEAIDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    +   A A++NPN+         L   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCAFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D+   + +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+RLKE
Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F +     +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 GNFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF V      E       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L VN +RG++  QL +    P
Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568


>gi|60683150|ref|YP_213294.1| putative single-stranded-DNA-specific exonuclease [Bacteroides
           fragilis NCTC 9343]
 gi|265767046|ref|ZP_06094875.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_16]
 gi|60494584|emb|CAH09385.1| putative single-stranded-DNA-specific exonuclease [Bacteroides
           fragilis NCTC 9343]
 gi|263253423|gb|EEZ24899.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_16]
          Length = 572

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W      QE    + A+ Q+  I  ++ R+LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITQEQAEISRALAQELGISPVLGRLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+  A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLDL A++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNGNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++ +M E+A  K++ + + +     IV+
Sbjct: 298 GKEAVDLLIEKDFSAALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F+ F    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|212693913|ref|ZP_03302041.1| hypothetical protein BACDOR_03435 [Bacteroides dorei DSM 17855]
 gi|265751302|ref|ZP_06087365.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_1_33FAA]
 gi|212663445|gb|EEB24019.1| hypothetical protein BACDOR_03435 [Bacteroides dorei DSM 17855]
 gi|263238198|gb|EEZ23648.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_1_33FAA]
          Length = 590

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/584 (28%), Positives = 273/584 (46%), Gaps = 22/584 (3%)

Query: 17  RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W      QE    A A+ ++  I  I+ ++L+ R ++    AK F  P +  L  DP +
Sbjct: 21  KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 79

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A  R+ QA+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  +G
Sbjct: 80  MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 139

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G +LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 140 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 199

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L  LLDLVA++   D+V
Sbjct: 200 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 254

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 255 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 314

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 315 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 373

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +     GS RS+ GFD+ K + +     +
Sbjct: 374 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEYC--RDL 430

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V  ID  ++   +     
Sbjct: 431 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 490

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 491 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 550

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                +       +   +   +  N  +     QL++ D  P E
Sbjct: 551 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 589


>gi|189346100|ref|YP_001942629.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium limicola
           DSM 245]
 gi|189340247|gb|ACD89650.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium limicola
           DSM 245]
          Length = 571

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/577 (28%), Positives = 266/577 (46%), Gaps = 19/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + WV L  QE   +   +     +   +AR L NR ++  + AK F  PSI  L   P +
Sbjct: 4   YSWVRLEPQE--KQVSLLAGAINVSHPLARALCNRGITTFEEAKTFFRPSISQL-SSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L + ++AA R++ A+ N EKI+++GDYDVDG    AL+  FL         YI DR  +G
Sbjct: 61  LQNMERAAERVIAALNNHEKILLYGDYDVDGTTGTALLCLFLRDQGAEVFYYINDRFTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +      G  LIIT+DCG  + +A++     GIDVIV DHH+   E  PA+A+
Sbjct: 121 YGLSSEGIAYAEKSGVSLIITIDCGIRAGEAIERCAQAGIDVIVCDHHE-PDELPPAFAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP   +       LC   V F ++  +   L               LDLVA+AT  D+V
Sbjct: 180 LNPKVPECTYPFRELCGCAVAFRLVQAVAERLGAGE-----ESWKQYLDLVAIATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            L   NR  V +GL   R      L  ++  + I +  +T  ++ + + P INA GR+  
Sbjct: 235 SLEKENRILVNEGLKRIRISPRKSLSGMLSVMGIDAGTMTMYHIAFGLAPRINAAGRMHS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++L    L++         A  LD +N  RR +++A+  +A+  +  +       S IV+
Sbjct: 295 AHLAVEWLLAATETGALETAQALDRMNLERREIDTAIFSRADRMI--EGHFASYCSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+R+ EK+  P+  +     G   GS RS+EG +I +++        
Sbjct: 353 YDEEWHLGVLGIVASRMLEKYYLPTVIMGSMN-GMIKGSVRSVEGINIYEVLQEC--SDH 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           LV+ GGH  AAG+T+   +       F      ++PA        ID  L    +    +
Sbjct: 410 LVQFGGHNQAAGITLRPEDLAGFRKKFDNICAALLPADKRQKELVIDSSLQLEEITANFM 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++L+   PYG GN  PVF      L    R++   H++ +    +      I F      
Sbjct: 470 NVLDQFAPYGFGNREPVFETSAVVLVGRPRLLKEKHVKFSVRDGNGRLFDVIGFDRKDVF 529

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + L    G R  +   L    W   ++ QLR+ D 
Sbjct: 530 --QILDADPGIRFSMAYSLEKRSWNNREQWQLRLKDL 564


>gi|304396713|ref|ZP_07378593.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. aB]
 gi|304355509|gb|EFM19876.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. aB]
          Length = 578

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 182/564 (32%), Positives = 277/564 (49%), Gaps = 19/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+ + R V        L    + L+P    L+  + A   + QA+ +  +IM+ 
Sbjct: 23  LPPLLKRLYLQRGVRDA---AELERGAKNLLPY-QSLSGIESAVELLHQALLDGRRIMVV 78

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GA +I+TVD
Sbjct: 79  GDFDADGATSTALTVMALRSMGGGNVQYLVPNRFEDGYGLSPEVVEQARARGAAMILTVD 138

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A   GI V++ DHH        A A+VNPN  D       L   GV F 
Sbjct: 139 NGISSHAGVDFAHQHGIPVLITDHHLPGETLPAAEAIVNPNLPDCNFPSRALAGVGVAFY 198

Query: 218 VLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
           +++ +   LR            +L  +LDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 199 LMLALRAHLRTQGWFGTTRTEPNLAEMLDLVALGTVADVVPLDVNNRILVWQGLSRIRAG 258

Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL++DD  +  ML
Sbjct: 259 KCRPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLMTDDLSQARML 318

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391
           A +LD LNQ R+ +E  M  +A A       + +   +        WH G+VG+LA+RLK
Sbjct: 319 ASELDALNQTRKEIEQGMQSEALALCQALEREQRDLPLGLAFYHPEWHQGVVGILASRLK 378

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           E+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL++E
Sbjct: 379 ERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLNPGMMLKFGGHAMAAGLSLE 438

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              +      F       +       +   DG L     ++   +ML  AGP+G   P P
Sbjct: 439 TARYEEFRQRFADLVGEWLDGESLQGIIWSDGALQPQEFSLQTAEMLREAGPWGQAFPEP 498

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     KL   R+V   HL++  E       +  IAF V  T   +    S  +++ + 
Sbjct: 499 AFDGK-FKLLQQRLVGERHLKVMVEPLDGGPLIDGIAFNVDTTLWPD----SSIRQVELA 553

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L +N +RG++  QL +    P+
Sbjct: 554 YKLDINEYRGNRSVQLIIDHIWPL 577


>gi|294776722|ref|ZP_06742186.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides vulgatus
           PC510]
 gi|294449377|gb|EFG17913.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides vulgatus
           PC510]
          Length = 590

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/584 (28%), Positives = 272/584 (46%), Gaps = 22/584 (3%)

Query: 17  RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W      QE    A A+ ++  I  I+ ++L+ R ++    AK F  P +  L  DP +
Sbjct: 21  KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 79

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A  R+ QA+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  +G
Sbjct: 80  MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 139

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G +LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 140 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 199

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L  LLDLVA++   D+V
Sbjct: 200 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 254

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 255 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 314

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 315 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 373

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +     GS RS+ GFD+ K +       +
Sbjct: 374 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--RDL 430

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V  ID  ++   +     
Sbjct: 431 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 490

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 491 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 550

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                +       +   +   +  N  +     QL++ D  P E
Sbjct: 551 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 589


>gi|150004614|ref|YP_001299358.1| putative single-stranded-DNA-specific exonuclease [Bacteroides
           vulgatus ATCC 8482]
 gi|149933038|gb|ABR39736.1| putative single-stranded-DNA-specific exonuclease [Bacteroides
           vulgatus ATCC 8482]
          Length = 573

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/584 (28%), Positives = 272/584 (46%), Gaps = 22/584 (3%)

Query: 17  RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W      QE    A A+ ++  I  I+ ++L+ R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A  R+ QA+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  +G
Sbjct: 63  MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G +LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L  LLDLVA++   D+V
Sbjct: 183 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 298 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +     GS RS+ GFD+ K +       +
Sbjct: 357 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                +       +   +   +  N  +     QL++ D  P E
Sbjct: 534 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 572


>gi|237708535|ref|ZP_04539016.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724007|ref|ZP_04554488.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437671|gb|EEO47748.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457464|gb|EEO63185.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 573

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/584 (28%), Positives = 273/584 (46%), Gaps = 22/584 (3%)

Query: 17  RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W      QE    A A+ ++  I  I+ ++L+ R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A  R+ QA+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  +G
Sbjct: 63  MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G +LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L  LLDLVA++   D+V
Sbjct: 183 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 298 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +     GS RS+ GFD+ K + +     +
Sbjct: 357 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                +       +   +   +  N  +     QL++ D  P E
Sbjct: 534 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 572


>gi|53715216|ref|YP_101208.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fragilis
           YCH46]
 gi|52218081|dbj|BAD50674.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fragilis
           YCH46]
          Length = 572

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W      QE    + A+ Q+  I  ++ R+LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITQEQAEISRALAQELGISPVLGRLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+  A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLDL A++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNGNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++ +M E+A  K++ + + +     IV+
Sbjct: 298 GKEAVDLLIEKDFSAALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLVDRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F+ F    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|148549450|ref|YP_001269552.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           F1]
 gi|148513508|gb|ABQ80368.1| exonuclease RecJ [Pseudomonas putida F1]
          Length = 569

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 178/562 (31%), Positives = 279/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   +     +V+AI   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEAIDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    +   A A++NPN+         L   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D+   + +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+RLKE
Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F +     +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 GNFPAFAKAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF V      E       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L VN +RG++  QL +    P
Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568


>gi|282858559|ref|ZP_06267730.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bivia
           JCVIHMP010]
 gi|282588684|gb|EFB93818.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bivia
           JCVIHMP010]
          Length = 574

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/585 (28%), Positives = 280/585 (47%), Gaps = 22/585 (3%)

Query: 18  WV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           W      Q+  + A  + +K +I  I+A +L+ R ++ +  AK F  P +  L+ +P ++
Sbjct: 5   WKHISPTQQEESAAKELGEKLSISPILALILIRRGITTESAAKRFFRPQLADLI-NPFLM 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  R+  A+   E+I+++GDYDVDG  SVAL+ +FL     N + YIPDR  +GY
Sbjct: 64  KDMDAAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLRQYYSNIDYYIPDRYEEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++       +LII +DCG  + + + YA  QGID I+ DHH       PA A++
Sbjct: 124 GVSKKGIDFAKETSVKLIIILDCGIKAIEEITYAKEQGIDFIICDHHVPDEIMPPAVAIL 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP R DD     HLC  GV F  +    +     N       L+ LLD  A++   D+VP
Sbjct: 184 NPKRKDDSYPFKHLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADLVP 238

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           ++  NR     GL    +  + GLKA+I+        +   ++ + IGP INA GR+   
Sbjct: 239 VVDENRILAYHGLKQLNQNPSLGLKAIIDICGLSERELEMSDIIFKIGPRINASGRMETG 298

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+  D  E    A  +D  N+ R+ ++  M E+A   ++ + ++ +  S IV+ 
Sbjct: 299 KESVDLLVERDFAEAVKAAKHIDEYNEQRKGVDRQMTEEANN-IVERLENQKHQSSIVLY 357

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + W  G+VG++A+RL E + RP+  ++ + +    GS RS+ GFDI + +       +L
Sbjct: 358 DEHWKKGVVGIVASRLTEIYFRPTIVLTKDGE-YATGSARSVAGFDIYEAIKSC--RDLL 414

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +  GGH  AAGLT++  +     +  Q F  N +      P+  ID  ++   +   L +
Sbjct: 415 INFGGHTYAAGLTLKWADVKTFRERLQAFIDNHIQPHQQEPILNIDANIDFKDITKKLHN 474

Query: 495 MLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYG 550
            L+   P+G  NP P+F+        + +VV     H+++     + +  +  IAF    
Sbjct: 475 DLKRFAPFGPSNPKPIFSTEGVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQSA 534

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           +           +   +   +  N ++     QL++ D    E  
Sbjct: 535 S----ARYIKSKRSFDIAFTIEENVFK-RNLVQLQIEDIRRTESE 574


>gi|224535855|ref|ZP_03676394.1| hypothetical protein BACCELL_00719 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522578|gb|EEF91683.1| hypothetical protein BACCELL_00719 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 571

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/582 (28%), Positives = 275/582 (47%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+  +LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPITPEQAETSQKLAQELGISPILGGLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSTKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAAAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 183 LNAKRLDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAFHGLKQLNSNPSVGLKAIIDVCGLTEKDITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  +++   + + +   IV+
Sbjct: 298 GKEAVDLLTEKDFSMALEKANQINQYNETRKDLDKTMTEEA-NQIVADLEGLAERRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F++F    +    T+ V  ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTKRFEEFVSQNILPEQTSAVINIDAEIDFRDISPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   PYG  NP P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPYGPDNPKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIQP 570


>gi|254883095|ref|ZP_05255805.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643615|ref|ZP_07998235.1| single-stranded-DNA-specific exonuclease [Bacteroides sp. 3_1_40A]
 gi|254835888|gb|EET16197.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384784|gb|EFV65743.1| single-stranded-DNA-specific exonuclease [Bacteroides sp. 3_1_40A]
          Length = 590

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/584 (28%), Positives = 272/584 (46%), Gaps = 22/584 (3%)

Query: 17  RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W      QE    A A+ ++  I  I+ ++L+ R ++    AK F  P +  L  DP +
Sbjct: 21  KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 79

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A  R+ QA+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  +G
Sbjct: 80  MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 139

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G +LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 140 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 199

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L  LLDLVA++   D+V
Sbjct: 200 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 254

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 255 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 314

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LLI  D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 315 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 373

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +     GS RS+ GFD+ K +       +
Sbjct: 374 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--RDL 430

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V  ID  ++   +     
Sbjct: 431 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 490

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 491 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 550

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                +       +   +   +  N  +     QL++ D  P E
Sbjct: 551 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 589


>gi|26988210|ref|NP_743635.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           KT2440]
 gi|24982948|gb|AAN67099.1|AE016338_9 single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           KT2440]
          Length = 569

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   +     +V+AI   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEAIDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    +   A A++NPN+         L   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D+   + +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+RLKE
Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F +     +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 ANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF +      E       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L VN +RG++  QL +    P
Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568


>gi|304407546|ref|ZP_07389198.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus
           curdlanolyticus YK9]
 gi|304343497|gb|EFM09339.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus
           curdlanolyticus YK9]
          Length = 801

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/598 (30%), Positives = 285/598 (47%), Gaps = 30/598 (5%)

Query: 14  SGFRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPD 71
           S  RW      E   +A   + Q  A+P +VAR+LV R +  + A   FL+  +  L  D
Sbjct: 4   SKTRWSQPDWDERREQAAGHLMQALALPPLVARLLVGRGIESEEAATSFLHGGM-ELTHD 62

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +L   + A +RI  AI   + I I+GDYD DG +S +LM+  L       + YIP R 
Sbjct: 63  PYLLAGMEAAVQRIRHAIEQEQWIRIYGDYDADGVSSTSLMIHLLERLGAKFDYYIPHRT 122

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N + ++     G +LIITVD G ++ D + YA  +GI+V+V DHH+       A
Sbjct: 123 REGYGMNCAAIDLAAEAGVKLIITVDTGISAVDEIAYAKAKGIEVVVTDHHEPPEVLPDA 182

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           Y+++NP           L   GV F +   +                L L D+VAL T+ 
Sbjct: 183 YSIINPKLPYCQYPYKSLAGVGVAFKLATALLGEAP-----------LDLTDIVALGTIA 231

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           DV+PL G NR  V +GL     +  PG  AL E   +    +T+ N+ + + P INA GR
Sbjct: 232 DVMPLNGENRVLVRQGLKEMALRTRPGFLALAETAGVQLQAVTSTNVAFSMAPRINASGR 291

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-----I 365
           +  +     LL + D +  E+LA +LD LN+ R+ +   M+++A ++   +C        
Sbjct: 292 LDHAGGAVELLTTSDQEAAELLAARLDALNRERQRIVEEMVDEAMSQWAEKCRIAAEACQ 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKM 424
              +VIV+ G+ W+ G++G++A+++ E++ +P+  +  + E GK  GS RSI+GFD+   
Sbjct: 352 SPPAVIVLAGEGWNAGVIGIVASKMLERYYKPTVVLGIDTETGKCKGSARSIDGFDLHAA 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           ++      +    GGH  AAG+T+ R     L       A   +      P   ID   +
Sbjct: 412 LTAC--ADLFDHFGGHQAAAGMTLHRDKLDALEQSLSDSAMAWLSPEDWVPKTFIDLACS 469

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQ 542
               ++  ID L    P+GAGNP P F F    +   R +     HL++    Q S  L+
Sbjct: 470 PKEASLDTIDQLALLEPFGAGNPAPRFLFEQQPVTDKRTMGKESKHLRLALGGQPSR-LE 528

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           A+ F             + G +  + G L VN W G+++ QL + D        F  +
Sbjct: 529 AVGFGFGEL----AERIAFGAQADLVGELSVNEWNGNRKPQLFIQDIRIANVQLFDWR 582


>gi|56963333|ref|YP_175064.1| single-strand DNA-specific exonuclease [Bacillus clausii KSM-K16]
 gi|56909576|dbj|BAD64103.1| single-strand DNA-specific exonuclease [Bacillus clausii KSM-K16]
          Length = 785

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/592 (30%), Positives = 292/592 (49%), Gaps = 27/592 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S  RW  L   E    A  +  +  +  + AR+LV R + ++  AK FL+        DP
Sbjct: 4   SKTRWRILEQNEL--LAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYE-EPTFYDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L   ++   RI  A+   E+I++FGDYD DG +S ++M+  L     + + YIP+R  
Sbjct: 61  FLLKGMEETIERIALAVKRKERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN   ++    +G  L+ITVD G ++ +   +A + G+D I+ DHH+       A 
Sbjct: 121 EGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDIGLDFIITDHHEPPPVLPEAL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP +         L   GV F V   +   L +            LLD   + T+ D
Sbjct: 181 AIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPE-----------ELLDYAVIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +VPLI  NR    KGL      G PG++AL E   +    + A+++G+ IGP +NA GR+
Sbjct: 230 LVPLIDENRLLAKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +N    LL++DD +E + LA ++D LN+ R+ + S M E+A  +++      +    I
Sbjct: 290 DSANPAVELLLADDEEEAKALATEIDSLNKERQAIVSKMTEEAI-RLVETTYGTKIPHAI 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV  + W+PG++G++A+RL E+F RP+  +S +E  G   GS RSIEGFD+      A  
Sbjct: 349 VVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY--QELANN 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH MAAG+T++  +   L     K A   +   + TP   ID V     V +
Sbjct: 407 RDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTV 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            +I  L++  P+G  N  P+       +  +R +     HL++ F     + L  IAFR+
Sbjct: 467 QVIGELQALAPFGVANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQ-KPLDGIAFRM 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                  F   +   ++   G + +N W G  + QL + D + +E   F  +
Sbjct: 526 GHL----FEEITPHAKLSAIGTVSLNEWNGKVKPQLIIDDLAVLEWQLFDWR 573


>gi|170077601|ref|YP_001734239.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           PCC 7002]
 gi|169885270|gb|ACA98983.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           PCC 7002]
          Length = 666

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 174/589 (29%), Positives = 298/589 (50%), Gaps = 23/589 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW     Q  I +  ++ +   +  +VA+VLVNRN+ + + AK ++ P  + L   
Sbjct: 5   LPQQRWHIADRQPDITQ--SLVEAMGLNPLVAQVLVNRNIRTPEQAKIYIQPESQRLPAP 62

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
            +   D   +   + +AI     I I GDYD DG  S AL++R L H        IP R+
Sbjct: 63  LVEFEDLALSVELLQEAIAEETLIAICGDYDADGMTSTALLLRALGHVGTKVTYAIPSRM 122

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            DGYG N  ++ +   EG  LI+TVD G ++Y+ +  A + G+DVI+ DHH +  +  PA
Sbjct: 123 KDGYGINERIVTELAEEGVGLILTVDNGISAYEPINLARDLGLDVIITDHHDLPDQLPPA 182

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP  L  +S    L   GV +++ V + + + +   +        +L+L  L T+ 
Sbjct: 183 NAILNPKLLPTMSPYAGLAGVGVAYVLAVSLAQAVDKLEGLTS-----QILELFTLGTIA 237

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINAG 308
           D+ PL G+NR ++ +GL +  +    G++AL++          +  +++G+ +GP INA 
Sbjct: 238 DLAPLTGVNRRWLKRGLKLLPQSELAGVQALMQIAGVDDQKKQLKPDDIGFRLGPRINAV 297

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRI +      LL +D+       AM+ + +N+ R+ M + +  +A A V     D Q  
Sbjct: 298 GRIDDPQKVIELLTTDEPGLALERAMQCEQINKQRQEMCTQIEAEAIALVEETPIDYQGQ 357

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            V+VV  + WH G++G++A+RL E++G P F  + EEDGK  GS R IE F++ + +++ 
Sbjct: 358 RVLVVCKEEWHHGVIGIVASRLVERYGVPVFICTAEEDGKIRGSARGIEEFNVFEALNYC 417

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +L K GGH  A G ++ R N     +   +FAH ++      P+ KIDG +N + +
Sbjct: 418 --QDLLGKFGGHKAAGGFSLARDNLAAFTEKLSEFAHQLLKPEHLKPLVKIDGAVNFTDL 475

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES---QDSETLQAIA 545
                  ++   P+G GNP P+F   N ++   R +   HL+ +        + T++AIA
Sbjct: 476 TPEFYQQIDQLHPWGIGNPEPIFWTKNVQILEQRTIGKNHLKFSLGQTIAGQTFTIKAIA 535

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           +       G++L       + +   L  N W G    +L ++ A P E 
Sbjct: 536 W-----QWGDYLPLPP--TLDIAYKLKENRWNGEVNLELELVGARPSEA 577


>gi|317505468|ref|ZP_07963386.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella salivae
           DSM 15606]
 gi|315663381|gb|EFV03130.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella salivae
           DSM 15606]
          Length = 583

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/587 (27%), Positives = 278/587 (47%), Gaps = 22/587 (3%)

Query: 16  FRWVSLLGQEGINRA-LAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W          +A   ++ K  I  I+A++L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYEPPTPQEKQASDELSGKLGIHPILAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   +      G +LII +DCG  +   +  A + GID I+ DHH    E  PA A
Sbjct: 122 GYGVSEKGIAYAKETGVKLIIILDCGIKAIQEIALAKSLGIDFIICDHHVPDEEMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD      LC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDSYPFKSLCGCGVGFKFMQGWAK-----NNGIPFSRLIPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+   NR     GL    +  + GLKA+I+   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVTDENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRELSMSDIIFRIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  +D  N+ R+ ++  M E+A   ++++ +  +  S IV
Sbjct: 297 NGKESVDLLVEKDYNIALKKAKHIDEYNEQRKDIDKQMTEEANV-IVSKLESQKHHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDLATGSARSVTGFDVYAAIKHC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT+   +       FQ++  + +   +T     +D  L+   +   L
Sbjct: 413 LLMNFGGHTYAAGLTLRWDDIPLFRKKFQQYVEDHIAPELTEATINLDAKLDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G     P+F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 FNDLKRFAPFGPECTKPLFFTQGVYDYGTSKVVGREQEHIKLELVDSKSSTVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
            G+           +   +   +  N ++   + QL++ D  P E H
Sbjct: 533 SGS----VRYIKSKRAFDIAYTIEANVFK-RNQVQLQIEDIRPEEEH 574


>gi|254229665|ref|ZP_04923075.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25]
 gi|262395208|ref|YP_003287062.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25]
 gi|151937786|gb|EDN56634.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25]
 gi|262338802|gb|ACY52597.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25]
          Length = 579

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   ++A   + QAI   ++I++
Sbjct: 18  SIPPILKRIYINRGITDPAQ---LETSARGLHSY-QKLGGIEQAVELLFQAIKEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLESCHFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKHNWFAEQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M ++A A           +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGSELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       V   DG L     ++ + + L S GP+G   
Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|229086972|ref|ZP_04219129.1| Exonuclease RecJ [Bacillus cereus Rock3-44]
 gi|228696348|gb|EEL49176.1| Exonuclease RecJ [Bacillus cereus Rock3-44]
          Length = 779

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E   +   +  K  +  +V  + + R +  +    DFLN   R    DP +L
Sbjct: 7   RWKEKSFNE--EQVSELASKLQLSPLVTSLFLGRGLDTEDKIVDFLNTE-RQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ QAI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVKQAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A + GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKDLGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++V + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIVVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D +N+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDEMNKLRKDIVKQITEEAIAEV-ENNYPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E F RP+  +    E     GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVELFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+     TP+  +D +     V ++ I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVEELRRRLNEQADAILTPEDFTPITTVDAICKVEDVTLSAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M   S    TL  I F     
Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMGLRSGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G   +N W   K+ QL + D +      F  +
Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573


>gi|228999197|ref|ZP_04158778.1| Exonuclease RecJ [Bacillus mycoides Rock3-17]
 gi|228760542|gb|EEM09507.1| Exonuclease RecJ [Bacillus mycoides Rock3-17]
          Length = 779

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + ++R +  +    DFLN   +    DP +L
Sbjct: 7   RWKEKSFNE--ELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFH-DPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D    RI QAI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDLTVERIGQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN          G  LIITVD G  +    Q A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSDITEESIGFSIAPRINAIGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNYPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +    E     GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ +   TP+  +D +     V ++ I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G   +N W   K+ QL + D +      F  +
Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573


>gi|119384612|ref|YP_915668.1| single-stranded-DNA-specific exonuclease RecJ [Paracoccus
           denitrificans PD1222]
 gi|119374379|gb|ABL69972.1| exonuclease RecJ [Paracoccus denitrificans PD1222]
          Length = 580

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 253/588 (43%), Positives = 354/588 (60%), Gaps = 11/588 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           AFL VE S++G  W           A A+ Q   +P  V+RVL  R V    A  +L+P 
Sbjct: 3   AFLSVESSLTGRLWRG-PEATLERAAEALAQDSRLPLPVSRVLAARGVPAHEAPLYLDPK 61

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R L+PDP  L D DKAA R+V A+   ++I IF DYDVDG AS AL++ +L     +A 
Sbjct: 62  LRDLLPDPSSLRDMDKAAERLVAAVLAGQRIAIFADYDVDGGASAALLLDWLRRQGRDAT 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   +   +++G  LII VDCG+ S++AL        DVIV+DHHQ 
Sbjct: 122 LYIPDRIDEGYGPNAPAIA-SLSQGHDLIICVDCGTLSHEALA---AASCDVIVLDHHQG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                P  A+VNPNR D+    GHLCAAGVVFL LV    +LR+D       DL+ LLDL
Sbjct: 178 GETLPPVLAVVNPNRADEDGSLGHLCAAGVVFLTLVRCNSLLRRDGH--PQPDLIPLLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G+NRA+V +GL+V  R+  PGL AL +   + S   A +LG+++GP 
Sbjct: 236 VALATVADVAPLVGVNRAFVRQGLLVMARRERPGLVALSDVARLDSAPNAFHLGFLLGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGR+G ++LG+  L   D ++ E LA +LDVLN++RR +E+A+ ++A A+V  +  D
Sbjct: 296 INAGGRVGRADLGALCLSCTDGRQAERLAAELDVLNRDRRAIEAAVRDEALAQVEARASD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
              + V    GD WHPG+VG++AAR+KE  G PS  I   E G G GS RS+ G D+G+ 
Sbjct: 356 ---SLVAWAAGDGWHPGVVGIVAARVKEATGLPSVVIG-VEGGIGKGSARSVPGVDLGRA 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGHAMAAGLT+E        +   +     +         +I G+++
Sbjct: 412 IQRLSAEGLLLKGGGHAMAAGLTIEEAKIPAAMERLSQLLSREMAERPGAGELRISGLMD 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            +   + L+ MLE AGP+G   P P FAF    + S   +  +HL++ F S  S  L+A+
Sbjct: 472 PAGATVELMQMLERAGPFGQAAPAPRFAFAEQLIDSAGAMGDSHLRLRFRSPGSPVLEAV 531

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           A+     PLG  L+ +RG+  H+ G L ++ W G +R +LR+ DA+PV
Sbjct: 532 AWGAMNGPLGPALLGARGRCFHLAGKLELSQWGGRERVRLRLDDAAPV 579


>gi|89072534|ref|ZP_01159106.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium sp. SKA34]
 gi|89051638|gb|EAR57091.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium sp. SKA34]
          Length = 574

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 185/562 (32%), Positives = 280/562 (49%), Gaps = 20/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P I+ R+  +R +  D     L  S + L+ +   L     A + +V A+  + +I+I 
Sbjct: 19  VPPILQRIYASRGIKND---AELERSAKGLL-NYNQLHGMTSAVQLLVDALSQNTRIIIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ I  GA+LI+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGCKNVDYLVPNRFDDGYGLSPEVVEQAIERGAELIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A  +G+ V+V DHH        A A+VNPN  +       LC  GV F 
Sbjct: 135 NGVSSIAGVAVAKEKGLTVLVTDHHLPGDCLPIADAIVNPNLNECGFPSKALCGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LRQ            +L  LLDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 195 LMLALRAELRQRGWFEQQGIAMPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++ALIE  N  S  +   +LG+ +GP INA GR+ + + G  LL+ D+ Q    
Sbjct: 255 GKCRPGIQALIEVANRDSARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCDNIQSARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390
           +A +LD LNQ R+ +E  M ++A A       + Q     +V     WH G++G+LA+R+
Sbjct: 315 MASELDGLNQTRKEIEQGMKDEALAICERLKFNQQDMPYGLVLFQRDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           K+K+ RP  A +   +G+  GS RSI G  +   +        G+++K GGHAMAAGLT+
Sbjct: 375 KDKYHRPVIAFADAGNGEIKGSCRSITGLHMRDALDLVDTQNPGMILKFGGHAMAAGLTI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
                      F     N +       V   DG L    +N+ + ++L + GP+G   P 
Sbjct: 435 PEDKLEAFSKAFDAVVRNALDEDALKGVLMTDGELGGHELNLDVAEILRAGGPWGQQFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   ++V   HL++  E       + AIAF V      +  +Q  G    +
Sbjct: 495 PTFDGT-FRLLHQKLVGGKHLKIMVEPLSGGSVIDAIAFNVDVKRWPDASVQQVG----L 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589
              L VN +RG++  QL V + 
Sbjct: 550 VYRLDVNEYRGNRSVQLMVEEL 571


>gi|166364907|ref|YP_001657180.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa
           NIES-843]
 gi|166087280|dbj|BAG01988.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa
           NIES-843]
          Length = 654

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/589 (27%), Positives = 288/589 (48%), Gaps = 19/589 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
            RW          +   + ++  +  ++A +L+NR +     AK +++P    L      
Sbjct: 8   QRWYIAATNP--EKIAGLAREMGLSSLLATILINRGIDTPELAKTYIDPEADTLPSPLGE 65

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D +K+   +V+AI   +KI I GDYD DG  S +L++R L H     N  IP R+ +G
Sbjct: 66  FPDLEKSVNLLVKAIARGDKIAICGDYDADGMTSTSLLLRALRHLGARVNHAIPSRMKEG 125

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  ++E+F   G  LI+TVD G ++++ +  A   G+ VI+ DHH +      A A+
Sbjct: 126 YGINQRIVEEFAESGVGLILTVDNGISAHEPIALAIELGLKVIITDHHDLPPILPNASAI 185

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP  L   S    L   GV +++ V   + + +   +       SLL L  L T+ D+ 
Sbjct: 186 LNPKLLTPNSPYQGLAGVGVAYILAVTTAQKMGKLQGLT-----ESLLALFTLGTIADLA 240

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGRI 311
           PLIG+NR ++ +GL    +    G+++L++   I      +  +++G+ +GP INA GRI
Sbjct: 241 PLIGVNRRWLKRGLRKLPKSQLVGIQSLMQIAGISEEQKQLQPDDIGFKLGPRINAIGRI 300

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G+  +   LL +D++      AM+ + +N+ R+ +   + E+A   V       QQ  V+
Sbjct: 301 GDPQIVIELLTTDEAGIALERAMQCEQINRTRQELCEKIEEEAIKLVEETPIFWQQDRVL 360

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WH G++G++A+RL E++G P F  ++EE+  G   G +    +     +    +
Sbjct: 361 VLVEKDWHHGVIGIVASRLVERYGVPVFIGTYEEEDTGKIRGSARGIEEFHVFEALQFCQ 420

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L K GGH MA G ++   N         +F+H I+      P+ KID +L+   +N+ 
Sbjct: 421 DLLGKFGGHKMAGGFSLPTANLLAFKQRLSQFSHKILQIEQLKPLIKIDTILDFKQINLQ 480

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
           L   ++S  P+G GN  PVF  PN ++   + +   HL++     D+  ++A+A+R    
Sbjct: 481 LFQQIDSLQPWGIGNELPVFWTPNVRVVEQKTIGKNHLKLLLAQSDNTRIKALAWRWGEY 540

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAK 599
                       R+ +   L  N W G+   ++ ++    P E ++  K
Sbjct: 541 C-------PLPTRLDIAYKLKENTWNGNTTIEIELVGVRLPQENNNIKK 582


>gi|229006744|ref|ZP_04164378.1| Exonuclease RecJ [Bacillus mycoides Rock1-4]
 gi|228754605|gb|EEM04016.1| Exonuclease RecJ [Bacillus mycoides Rock1-4]
          Length = 779

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + ++R +  +    DFLN   +    DP +L
Sbjct: 7   RWKEKSFNE--ELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFH-DPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D    RI QAI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDLTVERIGQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN          G  LIITVD G  +    Q A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSDITEESIGFSIAPRINAIGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNYPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +    E     GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ +   TP+  +D +     V ++ I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G   +N W   K+ QL + D +      F  +
Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573


>gi|146308395|ref|YP_001188860.1| exonuclease RecJ [Pseudomonas mendocina ymp]
 gi|145576596|gb|ABP86128.1| exonuclease RecJ [Pseudomonas mendocina ymp]
          Length = 569

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/562 (31%), Positives = 281/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V      + L+  +  L+P    L   D A   +V+A+   ++I+I
Sbjct: 17  NLPPLLTRLYAARGV---QCAEELDKGLARLIP-FQQLKGIDAAVELLVEALQRRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + ++ +  L      + +  +P+R   GYG  P ++   +     L++TV
Sbjct: 73  VGDFDADGATASSVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRQPDLLLTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    E   A A+VNPN+         +   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCDFPSKAMAGVGVMF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR+          +L  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLLALRARLRELGWFASRQEPNLGELLDLVALGSVADVVPLDANNRILVHQGLARIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALARDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++            + +    WH G++G+LA+RLKE
Sbjct: 313 AVQLDQLNQDRKAIEQGMQREALAQL-KDLPLQDMPFGLCLFEPDWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ G  I   +    A   G++ K GGHAMAAGL++ +
Sbjct: 372 RYHRPAIAFADAGEGMLKGSARSVPGLHIRDALDAVAARHPGLISKFGGHAMAAGLSLPQ 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NFG     F       +     T     DG L+A+  ++ L   L +AGP+G   P P+
Sbjct: 432 ENFGAFAAAFDAEVRRQLCEDDLTGRLLSDGQLDATEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     ++   R+V   HL++  +++  S  L  IAF +      E       +   V  
Sbjct: 492 FHG-VFQIVGQRIVGERHLKLVLKTECGSVQLDGIAFNIDR----EVWPNPTLRWAEVAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V   +P
Sbjct: 547 KLDLNEFRGNESVQLMVAHIAP 568


>gi|262277190|ref|ZP_06054983.1| single-stranded-DNA-specific exonuclease RecJ [alpha
           proteobacterium HIMB114]
 gi|262224293|gb|EEY74752.1| single-stranded-DNA-specific exonuclease RecJ [alpha
           proteobacterium HIMB114]
          Length = 580

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 206/583 (35%), Positives = 336/583 (57%), Gaps = 14/583 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           S+ G  WV        N A  I++++ +  + +R+L NRN++    ++FLNP I+  +P+
Sbjct: 5   SVQGKEWVLK--DFDKNLAEYISKEYNLDFLTSRLLANRNINQKNIENFLNPKIKNFLPN 62

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P    D  K    I + I N  KI IFGDYDVDGA S  +M ++L   +++  ++IPDR 
Sbjct: 63  PYNFKDMGKGLEIISRHIKNKNKICIFGDYDVDGATSSGIMSKYLEQLNIDHFVFIPDRQ 122

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            DGYGP+       IN+   LII +DCG+TS++A++YA ++ IDV+VIDHH+ +     A
Sbjct: 123 KDGYGPSVKTFTNIINKNVNLIIALDCGTTSFEAIEYARSKNIDVVVIDHHKSQETFPAA 182

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVAL 247
            A++NPNR+D+     +LCAAGV+F+ LV + +ILR++           +LL LLDLV +
Sbjct: 183 NAIINPNRIDETGDYYYLCAAGVLFIFLVGLNKILRENYYFNKAKVQEPNLLDLLDLVMM 242

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDVVPL+ LNRA+V +GL VA ++ N GLK L++   I   ++   +GY++GP INA
Sbjct: 243 GTVCDVVPLMDLNRAFVHQGLKVASKRHNLGLKTLVDYSKIKKKLSTYEVGYVLGPKINA 302

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIG+S LG  LL +++++   +++ +L+ LN  R+ +E  ++E+A +      +    
Sbjct: 303 GGRIGKSELGYNLLTTNNAETAYLISSELESLNLKRKDIEKKIVEEAISI----SERNND 358

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             ++ +  + WH G++G++A+RLK+ F +PSF IS + +    GS RSI GFD+G  ++ 
Sbjct: 359 EPIVFLSKNDWHEGLIGIVASRLKDHFNKPSFIISQKGED-CKGSARSIFGFDVGMAITK 417

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             +  I+ KGGGH MA G +++        +        +        + +ID  L +SA
Sbjct: 418 CKQLNIITKGGGHPMAGGFSLKSDKLEIFKNELINLFLKLKKNKD-NNIIEIDSYLESSA 476

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N  LI+ L    PYG+GN  P+F F   K+  +      H+++   ++ +  + AI+F 
Sbjct: 477 INDELIEKLNHLEPYGSGNREPIFGFEKFKVSKVIETKNNHVKVVL-NKGNFYIDAISFN 535

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                LG +LM  + K  ++   + +N W G  + +L + D  
Sbjct: 536 SKNKDLGNYLMNFK-KEFNLVAKIKLNEWNGKSKIELIIDDIQ 577


>gi|303230873|ref|ZP_07317620.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514633|gb|EFL56628.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 664

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/580 (32%), Positives = 300/580 (51%), Gaps = 24/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
            RW  +       +   + ++  +  IVAR++VNRN+  D    FL  +++ L+ DP  L
Sbjct: 4   KRWHIMPR--DTEKENTLIRELGVNPIVARLMVNRNIDSDEGHRFLEGTLKDLL-DPFTL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D + A   I++ I   + I+++GDYDVDG  + +L+ RFL       + YIP+R  +GY
Sbjct: 61  KDMETAVALILETIEAKKSIVVYGDYDVDGITATSLLYRFLVKMRARVSYYIPERQSEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +E  I++GA L+ITVDCG +SYD ++   ++ ID+I+ DHH    +  PA A++
Sbjct: 121 GLNLEALEHIISDGASLVITVDCGISSYDIVEAVCDR-IDIIITDHHTAPPQIPPARAVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           N  + D      +L   GV F +   ++  LRQ          L  LD+VAL TV DVVP
Sbjct: 180 NHKQPDCPYTDKNLSGVGVAFKLCQALW--LRQCG-----EWYLDDLDIVALGTVADVVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V  GL       N G+  LI+        ITA ++G+ + P +NA GR+  +
Sbjct: 233 LVGENRIIVQAGLKKMNELPNLGIDKLIDVAGLHDKTITAGHIGFTLAPRLNAAGRVTHA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++DD    E +A +L   N  R+ +E ++ E+A A V  Q        V VV 
Sbjct: 293 TRAVELLVTDDVDLAETIAQELQETNMERQEIERSIHEEARANVAAQGHLA--DYVTVVA 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ WHPG++G++A+RL E+F +P+  IS  ++G G GS RSIEGF+I   +     E IL
Sbjct: 351 GENWHPGVIGIVASRLVEEFYKPTLVIS-IDNGVGKGSCRSIEGFNIYNALKSC--EDIL 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGHA AAG +++      L     ++    V      PV  ID  L    +++ ++D
Sbjct: 408 IQFGGHAAAAGFSIDASRIDELRHRLTEYCKVQVSPDEYIPVVSIDATLPVDDIDVDIVD 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            + +  PYG GN  P+F   + K+Q I ++     H ++   + +  ++ AIA+      
Sbjct: 468 RVSALEPYGMGNSTPIFGVMDAKVQDIMLMGQLKNHCKVILATANG-SVDAIAWNRPDL- 525

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              F    +G  + V   L  N W+G    QL + D  P+
Sbjct: 526 ---FRHIFQGMNVKVAFTLQKNEWQGFVSPQLMIQDIEPI 562


>gi|284929094|ref|YP_003421616.1| exonuclease RecJ [cyanobacterium UCYN-A]
 gi|284809553|gb|ADB95258.1| exonuclease RecJ [cyanobacterium UCYN-A]
          Length = 650

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/586 (29%), Positives = 294/586 (50%), Gaps = 18/586 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           +   RW  +       +   + ++  I D++ +V++NR +     A+ +LNP+  +L P 
Sbjct: 3   LPNQRWDVISPNP--EKIQLLAEEMKISDLIVKVILNRGIDTSSLARIYLNPNEEILPPP 60

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
                D  K+   + +AI    KI I GDYD DG  S +L++R L +   + +  IPDRI
Sbjct: 61  LAEFPDLYKSISLLTRAIKEKSKIAICGDYDADGMTSTSLLLRALKYFGGDIHYKIPDRI 120

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            DGYG N  ++E     G +LI+TVD G ++YD +Q A   G++VI+ DHH +  +  PA
Sbjct: 121 KDGYGINTQIVENLAKNGVELILTVDNGISAYDPIQRAVELGVNVIITDHHDIPKKLPPA 180

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP  L   S    L   GV +++ + + + L +   +     + SLL+L  L T+ 
Sbjct: 181 DAILNPKLLSHESPYSGLAGVGVAYILALTLAQTLNKTEGI-----IASLLELFTLGTIA 235

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAG 308
           D+ PLIG+NR ++ +GL        PG++ALI+   I      + ++++G+ +GP INA 
Sbjct: 236 DLAPLIGVNRRWLKQGLKQLPNSQLPGIQALIKVSGISDEQKQLRSDDIGFKLGPRINAV 295

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRIG+  +   LL +DD +     A++ + +N  R+ +   + ++A   V     + Q+ 
Sbjct: 296 GRIGDPKVAIELLTTDDPELALEKALECEEINNVRKSLCEKIEKEAINLVENTPLNYQEK 355

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            V+VV  D WH G++G++A+RL E++G P F  ++EE+      G +    +     +  
Sbjct: 356 RVLVVIKDEWHHGVIGIVASRLVERYGVPVFIGTYEENDIEKIRGSARGIPEFDVFNALQ 415

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +L K GGH  A G  ++R           +F+H  +      P+ KID  +N   +
Sbjct: 416 YCDDLLDKFGGHKAAGGFGLKRKYLNSFEKRLSEFSHQHLKLHHIKPLIKIDSEINFKDI 475

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           N  L + L+S  P+G GN  P+F  PN  +   +++   HL+++    D E ++AIA+R 
Sbjct: 476 NHNLYETLDSLQPWGIGNAIPIFWTPNVIILKQKIIGDNHLKISLVQNDGEKIEAIAWRF 535

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                         K++ +   L  N W G    QL ++     E 
Sbjct: 536 GTYY-------PLPKQLDIAYKLSKNSWNGKSNIQLEIVGIRLPES 574


>gi|229013626|ref|ZP_04170757.1| Exonuclease RecJ [Bacillus mycoides DSM 2048]
 gi|228747685|gb|EEL97557.1| Exonuclease RecJ [Bacillus mycoides DSM 2048]
          Length = 773

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + + R ++ +    DFLN +      DP +L
Sbjct: 7   RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIADFLN-TADQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ A    P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G + +N W   K+ QL V D +      F  +
Sbjct: 529 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|28897285|ref|NP_796890.1| ssDNA exonuclease RecJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363585|ref|ZP_05776405.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus K5030]
 gi|260876250|ref|ZP_05888605.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus AN-5034]
 gi|260896428|ref|ZP_05904924.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus Peru-466]
 gi|260902721|ref|ZP_05911116.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus AQ4037]
 gi|28805494|dbj|BAC58774.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088410|gb|EFO38105.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus Peru-466]
 gi|308092897|gb|EFO42592.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus AN-5034]
 gi|308107644|gb|EFO45184.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus AQ4037]
 gi|308113319|gb|EFO50859.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus K5030]
          Length = 579

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/569 (30%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   ++A   + QAI   ++I++
Sbjct: 18  SIPPILKRIYINRGITD---IAQLETSARGLHSY-QKLGGIEQAVELLFQAIQEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCTFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   ++ +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       V   DG L     ++ + + L + GP+G   
Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIAEQLRAGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|149279018|ref|ZP_01885152.1| single-strand DNA specific exonuclease [Pedobacter sp. BAL39]
 gi|149230297|gb|EDM35682.1| single-strand DNA specific exonuclease [Pedobacter sp. BAL39]
          Length = 566

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/577 (28%), Positives = 267/577 (46%), Gaps = 17/577 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RWV    Q       ++ Q+  I   +A++LV R + + + AKD+  P +  L  DP +
Sbjct: 3   KRWVQ-AVQGNYVHIDSLAQQLNIDRSLAQILVQRGIITFEQAKDYFRPQLSQLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI +A+  SEKI+I+GDYDVDG  SVAL   F S  +     YIPDR  +G
Sbjct: 61  MKDMMKAVLRIEEALAASEKILIYGDYDVDGTTSVALAYSFFSQFTTKIEYYIPDRHKEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LI+ +DCG  S D + YAT  GID I+ DHH    E   A AL
Sbjct: 121 YGISTQGIDYASANGYSLIVALDCGIKSVDKVAYATGLGIDFIICDHHMPGEELPAAAAL 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P + D       L   G+ F +                       LDLV ++   D+V
Sbjct: 181 LDPKQSDCEYPFKELAGCGIGFKLAQAYCIKHGL-----PAEKYERYLDLVMVSIAADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+   NR     GL+        GLKAL++    S   T  ++ + + P INA GR+  +
Sbjct: 236 PVEDENRILAYHGLIKLNTAPCMGLKALMDISGRSKQYTLTDVVFSLAPRINAAGRMDHA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N   ++L+  +       +  +D+ N  R+  +  +  +A A +   C+ +      VV 
Sbjct: 296 NQAVKMLLCTEDTIALAQSEFIDLQNTERKTSDQNITAEALALI-ADCEILINKKTTVVY 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + W+ G++G++A+RL EK+ RP+  ++ + +G   GS RS+ GFD+ + +     + +L
Sbjct: 355 HESWNKGVIGIVASRLTEKYYRPTVVLT-KSNGLLTGSARSVAGFDLYEALLGC--QDLL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           V+ GGH  AAGLT+E          F++   + +   +  P   ID  +    ++     
Sbjct: 412 VQFGGHKFAAGLTIEPEKIDAFSARFEEIVSSTITEDLLCPEISIDAEIQLQQIDGKFQR 471

Query: 495 MLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           ++    P+G  NP PVF       +    VV   HL+++ + Q+S   ++I F       
Sbjct: 472 IISQMSPFGPHNPAPVFISHGVTMVGRPYVVATKHLKLSVKQQNSPIFESIGFNFAEHE- 530

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +        +   +  N W+  +R QL +    
Sbjct: 531 ---SLLRPNVPFSICYTIEENVWKDQRRLQLNIKGIK 564


>gi|67923725|ref|ZP_00517191.1| RecJ exonuclease [Crocosphaera watsonii WH 8501]
 gi|67854433|gb|EAM49726.1| RecJ exonuclease [Crocosphaera watsonii WH 8501]
          Length = 654

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/583 (28%), Positives = 286/583 (49%), Gaps = 20/583 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           +   RW          +   +  +  +  ++A+V++NR +     A+ ++NP    L PD
Sbjct: 3   LPDQRWYIASPNPD--QVKKLVAETGLSPLLAQVILNRGIDSPQLAQVYINPETENL-PD 59

Query: 72  PLI-LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           PL    D   +   + +AI   EKI I GDYD DG  S +L++R  +H   +A   IP R
Sbjct: 60  PLTEFPDLFPSIELLKEAIETGEKIAICGDYDADGMTSTSLLLRAFNHFGGDAYYEIPSR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + DGYG N  ++EKF  EG  +++TVD G ++Y+ ++ A   G+ VI+ DHH +  +  P
Sbjct: 120 MKDGYGINERIVEKFAEEGVGVVLTVDNGISAYNPIKLAVELGLTVIITDHHDLPEKLPP 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  L   S    L   GV +++ V +   L++ + +     + SLL+L  L T+
Sbjct: 180 ADAILNPKLLPIQSPYRGLAGVGVAYILAVTLAEALQKSDGI-----IDSLLELFTLGTI 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307
            D+ PL+G+NR ++ KGL         G++AL++          +  +++G+ +GP INA
Sbjct: 235 ADLAPLVGVNRRWLKKGLKQLPNSQLVGIQALMQVAGVSEEQKQLKPDDIGFKLGPRINA 294

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+      LLI+DD       AM+ + +N  R+ +   + ++A   + T   D ++
Sbjct: 295 VGRIGDPETAIELLITDDPAIALERAMQCEQINSQRKSLCEEIEQEAIHLIRTTPIDYKR 354

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+VV   +WH G++G++A+RL E++G P F  ++EE       G +    +     S 
Sbjct: 355 DRVLVVVHPQWHHGVIGIVASRLVERYGVPVFIGTYEEADYSKIRGSARGIEEFNIFESL 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                +L K GGH  A G  +   N     +   +FAH ++      P+ KIDG  +   
Sbjct: 415 VYCYDLLGKYGGHKAAGGFGLGSDNLIAFQERLSQFAHQLLEPHHLKPLVKIDGQADFKQ 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +   L + ++S  P+G  N  PVF  PN K+   R V   HL++     D + ++AIA+R
Sbjct: 475 LKTQLYENIDSLQPWGIQNAFPVFWTPNVKILEQRTVGKNHLKLVLGQDDGQEIKAIAWR 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          K + +   L  N W G+   +L ++   
Sbjct: 535 FGSYF-------PLPKCLDIAYKLTENNWNGAVNIELEIVGVR 570


>gi|308187995|ref|YP_003932126.1| Single-stranded DNA-specific exonuclease [Pantoea vagans C9-1]
 gi|308058505|gb|ADO10677.1| Single-stranded DNA-specific exonuclease [Pantoea vagans C9-1]
          Length = 578

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/564 (32%), Positives = 276/564 (48%), Gaps = 19/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+ + R V        L    + L+P    L+  + A   + QA+ +  +IM+ 
Sbjct: 23  LPPLLKRLYLQRGVCDA---AELERGAKNLLPY-QSLSGIESAVALLHQALLDGRRIMVV 78

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GA +I+TVD
Sbjct: 79  GDFDADGATSTALTVMALRSMGGGNVQYLVPNRFEDGYGLSPEVVEQARARGAAMILTVD 138

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A   GI V++ DHH        A A+VNPN  D       L   GV F 
Sbjct: 139 NGISSHAGVECAHQHGIPVLITDHHLPGETLPAAEAIVNPNLPDCNFPSRALAGVGVAFY 198

Query: 218 VLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
           +++ +   LR            +L  +LDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 199 LMLALRAHLRTQGWFGATRAEPNLAEMLDLVALGTVADVVPLDVNNRILVWQGLSRIRAG 258

Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL++DD  +  ML
Sbjct: 259 KCRPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLMTDDLSQARML 318

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391
           A +LD LNQ R+ +E  M  +A A       +     +        WH G+VG+LA+RLK
Sbjct: 319 ASELDALNQTRKEIEQGMQSEALALCQALEREQSDLPLGLAFYHPEWHQGVVGILASRLK 378

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           E+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL++E
Sbjct: 379 ERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLNPGLMLKFGGHAMAAGLSLE 438

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              +      F       +       +   DG L     ++   +ML  AGP+G   P P
Sbjct: 439 TARYEEFRQRFADLVGEWLDGESLQGIIWSDGALQPQEFSLQTAEMLREAGPWGQAFPEP 498

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     KL   R+V   HL++  E       +  IAF V  T   +    S  +++ + 
Sbjct: 499 AFDGK-FKLLQQRLVGERHLKVMVEPLNGGPLIDGIAFNVDTTLWPD----SSIRQVELA 553

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L +N +RG++  QL +    P+
Sbjct: 554 YKLDINEYRGNRSVQLIIDHIWPL 577


>gi|229135232|ref|ZP_04264031.1| Exonuclease RecJ [Bacillus cereus BDRD-ST196]
 gi|228648274|gb|EEL04310.1| Exonuclease RecJ [Bacillus cereus BDRD-ST196]
          Length = 781

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 285/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + + R ++ +    DFLN + +    DP +L
Sbjct: 15  RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLNTTDQEFH-DPFLL 71

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 72  EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 131

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 132 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 191

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 192 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 240

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 241 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 300

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 301 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 359

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 360 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 417

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ A    P+  +D       V +A I
Sbjct: 418 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 477

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 478 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 536

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G + +N W   K+ QL V D +      F  +
Sbjct: 537 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 581


>gi|256425938|ref|YP_003126591.1| single-stranded-DNA-specific exonuclease RecJ [Chitinophaga
           pinensis DSM 2588]
 gi|256040846|gb|ACU64390.1| single-stranded-DNA-specific exonuclease RecJ [Chitinophaga
           pinensis DSM 2588]
          Length = 568

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/578 (27%), Positives = 266/578 (46%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW     Q        +     I  ++ R+LV R + + D ++ F  P++  L  DP +
Sbjct: 3   KRWTVRSYQPKQEAL--LQSSLRIHPLLCRLLVQRGMHTYDESRLFFRPTLADLH-DPWL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA  RI QA ++ EKI++FGDYDVDG  +VA +  FL     N   YIP R  +G
Sbjct: 60  MKDMDKAVSRIEQAFFHREKILVFGDYDVDGTTAVATVYDFLHSLYNNIEFYIPHRYKEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +E   +    LIIT+DCG  + D +++A + GID I+ DHH   +   PA A+
Sbjct: 120 YGISTQGIEYARDNEFTLIITLDCGIKAIDQIKWAADNGIDFIICDHHLPDAILPPAVAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       L   G+ + ++    +          +  +   LDLVA +   D+V
Sbjct: 180 LNPKQYDCPYPYKELSGCGIGYKLISAFAQKKGI-----PDEQVHRYLDLVATSIAADIV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL         G++ALIE   +   +T  NL ++I P +NA GR+ ++
Sbjct: 235 PMTGENRVLAFHGLKKVNSAPLAGIQALIELSGLKEQLTISNLVFVIAPRVNAAGRMDDA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                L +  D  +   +A  L   N +R+ ++  + ++A   +      ++     V+ 
Sbjct: 295 RKAVNLFVETDKDKAMEIAKVLHADNFDRKEIDGNITKEAVELLQNDLT-LKDKKSTVLY 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G+VG++A+RL +K+      I    + K  GS RS+ GF++ + +     + +L
Sbjct: 354 KPDWHKGVVGIVASRLIDKYYYRPTIILTLSNDKVAGSARSVTGFNVYEAIHQC--KDLL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGH  AAG+T++  N       F++     +   +  P   ID  ++   +  A  +
Sbjct: 412 ENYGGHFYAAGMTLKPENVEAFQQKFEEVVATTINPDLLVPEIVIDTEIHLKDITPAFFN 471

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTP 552
           +L    P G  N  PVF   N       R+V   H++ + +   S   L  I F +    
Sbjct: 472 ILRQFEPLGPENLRPVFLVRNVVDSGYSRLVKDEHIKFSVKQGKSPNALTGIGFYMSE-- 529

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +F + S  +   +   +  N W G    QL+V+D  
Sbjct: 530 --KFHIVSSKQPFDMAFTIDENEWNGKMNLQLKVIDIR 565


>gi|270264902|ref|ZP_06193166.1| ssDNA exonuclease RecJ [Serratia odorifera 4Rx13]
 gi|270041200|gb|EFA14300.1| ssDNA exonuclease RecJ [Serratia odorifera 4Rx13]
          Length = 577

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/565 (32%), Positives = 276/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+   R V  +     L  S++ ++P    L   D A   + QA+  S +IM+
Sbjct: 21  GLHPLLRRLYALRGVKAEQE---LERSVKGMLP-WQQLDGIDTAVGILQQALAASRRIMV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     +  +  +P+R  DGYG +P ++E+    GA+LI+TV
Sbjct: 77  VGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPEVVEQAAARGAELILTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A  +G+ V+V DHH        A A+VNPN          L   GV F
Sbjct: 137 DNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLRGCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMLALRARLRESGWFEQRALAMPNLAELLDLVALGTVADVVPLDANNRILVYQGLNRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +  
Sbjct: 257 AGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           MLA  LD LN  RR +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 MLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   +G   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +   V   DG L    +++   ++L   GP+G   P
Sbjct: 437 LEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLETAELLREGGPWGQAFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + 
Sbjct: 497 EPTFDGR-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG++  QL +    P
Sbjct: 552 LAYKLDVNEFRGNRNVQLLIQHLWP 576


>gi|65321775|ref|ZP_00394734.1| COG0608: Single-stranded DNA-specific exonuclease [Bacillus
           anthracis str. A2012]
          Length = 779

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            L   LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573


>gi|228993148|ref|ZP_04153070.1| Exonuclease RecJ [Bacillus pseudomycoides DSM 12442]
 gi|228766607|gb|EEM15248.1| Exonuclease RecJ [Bacillus pseudomycoides DSM 12442]
          Length = 779

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + ++R +  +    DFLN   +    DP +L
Sbjct: 7   RWKEKSFNE--ELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFH-DPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D    RI QAI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDLTVERIGQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN          G  LIITVD G  +    Q A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNYLPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +    E     GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ +   TP+  +D +     V ++ I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G   +N W   K+ QL + D +      F  +
Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573


>gi|153839364|ref|ZP_01992031.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus AQ3810]
 gi|149747112|gb|EDM58100.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus AQ3810]
 gi|328472049|gb|EGF42926.1| ssDNA exonuclease RecJ [Vibrio parahaemolyticus 10329]
          Length = 579

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/569 (30%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   ++A   + QAI   ++I++
Sbjct: 18  SIPPILKRIYINRGITD---IAQLETSARGLHSY-QKLGGIEQAVELLFQAIQEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   ++ +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       V   DG L     ++ + + L + GP+G   
Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIAEQLRAGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|313675542|ref|YP_004053538.1| exonuclease recj [Marivirga tractuosa DSM 4126]
 gi|312942240|gb|ADR21430.1| exonuclease RecJ [Marivirga tractuosa DSM 4126]
          Length = 569

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/578 (28%), Positives = 270/578 (46%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
            +W+    +        ++Q   I  +++++L++R +S  + AK F  PSI     DP +
Sbjct: 5   KKWII-ASEPEQKMIHELSQSININPVLSKILLSRGISNFEEAKTFFRPSIED-CHDPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A  R+++A+ N E I+++GDYDVDG+ SVA+M  FL     N   YIPDR V+G
Sbjct: 63  MKDMPIAVERLIKALDNHESILVYGDYDVDGSTSVAMMYSFLKSYCKNLYYYIPDRYVEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++    +   LII++DCG  + D + YA ++ ID I+ DHH    +   A A+
Sbjct: 123 YGISYKGIDYAKEKNCSLIISLDCGIKAIDKVDYANSENIDFIICDHHNPSEKLPQAVAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L   GV F ++                     LLDLVA++   D+V
Sbjct: 183 LDPKRKDCPYPFKELSGCGVGFKLIQAFCIQKEIPEHHAF-----ELLDLVAISIAADIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            + G NR     GL        PG+KALI+   +   IT  NL + +GP INA GRI  +
Sbjct: 238 AVTGENRILAFYGLEKINFNPRPGIKALIQASGLKEKITISNLVFQLGPRINAAGRIDHA 297

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +L  RLL +    E  ++A  +   N  R+  +  +  +A + +  +   +  A   V+ 
Sbjct: 298 HLAVRLLTAIHEDEALIIAENVSHKNTTRKDFDQNITSEALSTI-EENTSMLSAKSTVLF 356

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G++G++A+R  E   RP+  ++ E +GK  GS RS++GFD+   +    E   L
Sbjct: 357 NKNWHKGVIGIVASRCIEHHYRPTIIMT-ESNGKATGSARSVDGFDLYSAIESCKEY--L 413

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAGLT+           F+      +      P  KID  +    +      
Sbjct: 414 EQFGGHKHAAGLTLAIDQIPSFAAAFEAVVQKNITEDQLIPKVKIDSYIEIDQITDKFYS 473

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTP 552
           +L    P+G GN  PVFA  N  +     ++   HL++T + +  +  + AI F +    
Sbjct: 474 ILSQMDPFGPGNMQPVFAAKNLSVLGEPLILKEKHLKLTVKDRSGKNKITAIGFGMAEYK 533

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +        +   +  N++ G K  QL + D  
Sbjct: 534 A----LIMNSNAFELAFTIQENHFNGLKSLQLYLKDIR 567


>gi|310822730|ref|YP_003955088.1| single-stranded-DNA-specific exonuclease recj [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395802|gb|ADO73261.1| Single-stranded-DNA-specific exonuclease RecJ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 570

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 184/585 (31%), Positives = 299/585 (51%), Gaps = 26/585 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW+    +    +  ++ ++  +  + ARVL++R   + +    FL+  +  L PDP +L
Sbjct: 2   RWLL--PEAVDQQVASLARELGLHPLSARVLLHRGYRTPEAVSAFLSDKLADL-PDPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
                A  R+ +A+   EKI ++GDYDVDG  S +L+  FL         YIP R+ +GY
Sbjct: 59  KGMTSAVERLARALRLGEKITLYGDYDVDGVCSTSLLTLFLRQLGAQPATYIPHRLGEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   M++   EG +L++T+DCG TS   +  A   G+DV+++DHH V +    A A++
Sbjct: 119 GLNLQAMDRIAQEGTRLLVTLDCGITSVAEVARARELGMDVVIVDHHTVPTTLPAAVAVL 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253
           NP++         LCAAGV F + + + + LR +          L  L+DLVALATV DV
Sbjct: 179 NPHQPGCDYPTKTLCAAGVAFNLCMGLRKHLRDEGFFATRKEPLLKGLMDLVALATVADV 238

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRI 311
           VPL G NR  V  GL        PG++AL E   +    P+TA  +G+ +GP INA GR+
Sbjct: 239 VPLTGANRILVAHGLQELTAARRPGVRALKEVAGVEPEAPVTAGQVGFRLGPRINAAGRL 298

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            +++LG +LL ++  ++   LA  LD  N  R+ +ES++L +A      Q + +  A  +
Sbjct: 299 HDASLGLQLLTAESLEDARRLAGVLDRANAERQGIESSILTEAL----KQAESLPHARGL 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WHPG++G++A+R+ E+F RP+  +   E G G GS RSIEGF +   +      
Sbjct: 355 VLYAEGWHPGVIGIVASRVVERFHRPTVMVGVNE-GIGKGSARSIEGFHLYDALHGC--A 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L + GGH  AAGLT+E        + F++ A   +      P  K+D V+    ++  
Sbjct: 412 DMLSRFGGHKYAAGLTIEAGRLPAFREAFERIALERLTPEDLIPRCKVDAVVTPHELDER 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV----NLAHLQMTFESQDSETLQAIAFR 547
            ++ L+  GP+G GNP PV      ++   RV+       H  +     D+  + AI F 
Sbjct: 472 AVESLQRLGPFGQGNPEPVLVLRK-QMARPRVLPPKTGHGHAHLKLALVDAPGVDAIGFG 530

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +         +      + +   + ++ +RG +R  LR+ D    
Sbjct: 531 MADR------LSLVEGPVDLAFQVGMDTFRGQRRVSLRLKDLRIA 569


>gi|39997708|ref|NP_953659.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter
           sulfurreducens PCA]
 gi|39984600|gb|AAR35986.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter
           sulfurreducens PCA]
 gi|298506642|gb|ADI85365.1| single-stranded DNA-specific exonuclease RecJ [Geobacter
           sulfurreducens KN400]
          Length = 578

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/578 (30%), Positives = 282/578 (48%), Gaps = 17/578 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W        +   + +++  ++  ++AR+L NR V+     + FL  ++  L  DPL+
Sbjct: 7   KVWTIREPDRDV--VVRLSRDLSLDPLLARLLANRGVTDGIDGRRFLGATLADLR-DPLL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   D A  R+  A+ N E++ ++GDYDVDG    AL++ F          +IP R+ DG
Sbjct: 64  LRGMDAAVERLCAALRNGEQVCVYGDYDVDGVTGTALLVSFFREVGFTCRYHIPKRLSDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +      GA++I+TVDCG  S        + G+D+I+ DHH    E   A A+
Sbjct: 124 YGLSEDGIRAVAERGARVIVTVDCGIGSVAEADLCASLGVDLIITDHHSPGPELPRALAV 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCD 252
           +NP +         L   GV F +L+ +   LR+          +L   LDLVAL T+ D
Sbjct: 184 INPRQPGCSYPFKSLAGVGVAFNLLIALRGRLREQGCFTAGPEPNLRQYLDLVALGTIAD 243

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           VVPL+  NR +V  GL         G+ AL +   ++  +    +G+ + P +NA GR+ 
Sbjct: 244 VVPLVEENRIFVTYGLKEMSATSRVGVTALKDVAGVAGRVGCGAVGFRLAPRLNAAGRLE 303

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++LG  LL++ D      LA +LD  N  R+ +E ++L++A A V        + S+ V
Sbjct: 304 DASLGVELLLTGDRSRAATLAAELDRSNGERQALERSILDEATAMVRANPAMASKRSI-V 362

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  D WHPG+VG++A+RL ++F RP+  I+ ++ G G GSGRS+    +   +S   E  
Sbjct: 363 LASDAWHPGVVGIVASRLVDRFHRPTILIALQD-GTGRGSGRSVPALHLLDALSACGEH- 420

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L K GGH  AAGL+++        D F+     ++      PV   D  L A  V  AL
Sbjct: 421 -LEKFGGHRQAAGLSIDEETLQAFVDRFEDVCAGLLGPDDLKPVVAADAELAADEVTPAL 479

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +D++E+  P+G GNP P+F      +   RV    HLQ+         + A+ F +    
Sbjct: 480 VDLIEALEPFGMGNPEPLFLLRGATICGRRVAGGHHLQLRL-DLGGRQVDAVGFNLAARD 538

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  + G+R+ +      N W G ++ QL + D  
Sbjct: 539 ------GAPGERVDILFTAGWNSWNGRRKFQLTLKDLK 570


>gi|30264479|ref|NP_846856.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Ames]
 gi|47529937|ref|YP_021286.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49187299|ref|YP_030551.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Sterne]
 gi|165872010|ref|ZP_02216651.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0488]
 gi|170709257|ref|ZP_02899677.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0389]
 gi|190566914|ref|ZP_03019830.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817187|ref|YP_002817196.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. CDC 684]
 gi|229602672|ref|YP_002868695.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0248]
 gi|254724665|ref|ZP_05186448.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A1055]
 gi|254751352|ref|ZP_05203389.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Vollum]
 gi|254757684|ref|ZP_05209711.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Australia 94]
 gi|30259137|gb|AAP28342.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Ames]
 gi|47505085|gb|AAT33761.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49181226|gb|AAT56602.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Sterne]
 gi|164712300|gb|EDR17836.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0488]
 gi|170125833|gb|EDS94740.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0389]
 gi|190561905|gb|EDV15874.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004863|gb|ACP14606.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. CDC 684]
 gi|229267080|gb|ACQ48717.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0248]
          Length = 779

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            L   LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573


>gi|163731960|ref|ZP_02139407.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter litoralis Och 149]
 gi|161395414|gb|EDQ19736.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter litoralis Och 149]
          Length = 580

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 245/599 (40%), Positives = 338/599 (56%), Gaps = 33/599 (5%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLG+E S++G RWV     E    A  + Q+  +P  V +VL  R V  + A+ FL P+
Sbjct: 2   SFLGIERSLTGRRWVG-PTAEMERAAQTLEQRADLPAPVCQVLARRGVQAEDAQSFLAPA 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R LMPDP  L D  KAA R + A+   EKI IF DYDVDG +S AL++ +L      A 
Sbjct: 61  LRDLMPDPRSLKDMTKAATRFLDAVRKREKIAIFADYDVDGGSSAALLLSWLRQTGREAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M +       LI+ VDCG+ S+  +  A   G DV+V+DHH  
Sbjct: 121 LYIPDRIDEGYGPNDEAMAQLAR-AHDLIVCVDCGTLSHGPIAAAV--GADVLVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
             E   A A+VNPNR D+    GHLCAAGVVFL+LV + R+LR+  +   + DL+S LDL
Sbjct: 178 TEELPAALAVVNPNRQDESGDLGHLCAAGVVFLLLVELRRLLREAGQ--TSPDLMSFLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G+NRA+V +GL V  R+   GL AL +   + +   A +LG+++GP 
Sbjct: 236 VALATVADVAPLVGINRAFVRQGLKVLARRERIGLTALADVAGVDTEPNAYHLGFILGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG ++LG+RLL ++D  E   LA +LD LN  RR +E+A+   A A+   +  D
Sbjct: 296 VNAGGRIGAADLGARLLATNDPHEAAALAERLDKLNTERREIEAAVRATALAQAEERGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                ++   G  WHPG+VG++A+RLKE  GRPS  I   + G G GSGRS+ G D+G+ 
Sbjct: 356 ---RPLVWAAGADWHPGVVGIVASRLKEAAGRPSIVIGISD-GIGKGSGRSVSGIDLGQP 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTVE            +       + I      IDG+L 
Sbjct: 412 IQRLAAEGLLLKGGGHKMAAGLTVEESKIETAMARLSELLEKQGASSIGAADLHIDGMLM 471

Query: 485 ASAVNIALIDMLES-----------AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
             A  + L+  +E                        + F N  ++  + V   HL+++F
Sbjct: 472 PEAAAVELVQKIEQAGPFGAAAPAP-----------RYVFANVAVRFAKRVGENHLKLSF 520

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            S    ++ AI F  Y T LG  L    G R H+ G L +N WRG +  QLR+ DA+P 
Sbjct: 521 GSDAG-SMDAICFGAYDTDLGPTLETHGGARFHLAGRLDINTWRGRQSVQLRLEDAAPA 578


>gi|170723303|ref|YP_001750991.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           W619]
 gi|169761306|gb|ACA74622.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           W619]
          Length = 569

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 281/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   D A   +V+A+   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIDAAVDLLVEALDQRQRIII 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    +   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLKVLVTDHHLPGQQLPVADAIVNPNQPGCDFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D      +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALALDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RLKE
Sbjct: 313 AQQLDGLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDAE-WHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F +     +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 GNFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF +      E       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L VN +RG++  QL +    P
Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568


>gi|251790994|ref|YP_003005715.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya zeae
           Ech1591]
 gi|247539615|gb|ACT08236.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya zeae
           Ech1591]
          Length = 576

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 183/566 (32%), Positives = 280/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++P ++ R+   R V        L  S+R L+ D  +L   ++A   + +A+  + +I+I
Sbjct: 20  SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGIEQAVEVLRRALAENRRIVI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R  DGYG +P ++ +   +GA+LI+TV
Sbjct: 76  VGDFDADGATSTALTVLALRSMGGYEVQYLVPNRFEDGYGLSPEVVAQAAVKGAELIVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A  +GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 136 DNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 196 YLMMALRASLRESGWFSERGLAEPNLAELLDLVALGTVADVVPLDANNRILVSQGLSRIR 255

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N   + + A +LG+ +GP +NA GR+ + ++G  LL+ +D  +  
Sbjct: 256 AGKCRPGIRALLEVSNRDAAHLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           MLA  LD LNQ+RR +E+ M  +A           +   +   +    WH G+VG+LA+R
Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALQLCEQLERSRETLPLGLAMYHPEWHQGVVGILASR 375

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLS 435

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +    F      F       + A     V   DG L    +++   +ML  AGP+G   P
Sbjct: 436 LVEDRFDEFRQRFADLVSEWLDAAQLEGVVWSDGELAPPELSLGTAEMLREAGPWGQAFP 495

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V      +    S  + + 
Sbjct: 496 EPLFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD----SSVREVE 550

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L VN +RG +  QL +    P+
Sbjct: 551 LAYKLDVNEFRGKRSVQLLIEHLWPL 576


>gi|149910169|ref|ZP_01898815.1| putative single-stranded-DNA-specific exonuclease RecJ [Moritella
           sp. PE36]
 gi|149806755|gb|EDM66719.1| putative single-stranded-DNA-specific exonuclease RecJ [Moritella
           sp. PE36]
          Length = 576

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 183/565 (32%), Positives = 288/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ ++  +R V  D     L   ++ L+  P  L     A   +V A+  +++I+I 
Sbjct: 20  VPALLRQIYASRGVKSDQE---LEKGVKNLLR-PNQLKGMTAACELLVSALVKNQRIIII 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL M         N +  +P+R   GYG +P +++     GAQLI+TVD
Sbjct: 76  GDFDADGATSTALSMLAFKMLGYRNIDFLVPNRFEFGYGLSPEIVDLAATNGAQLIMTVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A   GI V+V DHH   +E   A A+VNPN+        +L   GV F 
Sbjct: 136 NGISSIAGVAAAKALGIKVLVTDHHLPGNEIPDADAIVNPNQHGCTFPSKNLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR- 272
           V++ +   LR+ +          +L  LLD+VAL TV DVVPL   NR  V +GL   R 
Sbjct: 196 VMLALRGALREQDWFAKQGITEPNLACLLDIVALGTVADVVPLDANNRILVHQGLQRIRA 255

Query: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KALIE  N +   + A +LG+ +GP +NA GR+ + ++G   L+ +D      
Sbjct: 256 DKCRPGIKALIEIANRNQAQLCASDLGFALGPRLNAAGRLDDMSVGVATLLCEDLNNARR 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARL 390
            A +LD LN+ R+ +ES+M ++A A + +   D  Q    I +  D WH G+VGL+A+R+
Sbjct: 316 FAGELDSLNEERKEIESSMQQEALAILKSVDFDAGQVPYGICLFQDDWHQGVVGLVASRI 375

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G+  GS RSI G  +  ++        G+++K GGHAMAAGL++
Sbjct: 376 KERFHRPVIAFADAGEGEIKGSARSIPGLHLRDVLELLDIRNPGMILKFGGHAMAAGLSL 435

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
               +      F      ++     T V   DG L +  +++   ++++ A P+G   P 
Sbjct: 436 RLDCYDEFAKQFNALVQELLTEEQLTGVVLSDGELLSEQLSLPTAELIKEAAPWGQMFPE 495

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     KL+  R+V   HL+M  E  Q    + AIAF V      +    +  +++ +
Sbjct: 496 PIFDGI-FKLREQRLVGKKHLKMMLEPEQGGPLVDAIAFNVDLEVWPD----ASVQKIEL 550

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L VN +RG +  Q  V    P+
Sbjct: 551 AYKLDVNEFRGKRSLQFMVEHLQPL 575


>gi|163942159|ref|YP_001647043.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           weihenstephanensis KBAB4]
 gi|163864356|gb|ABY45415.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           weihenstephanensis KBAB4]
          Length = 773

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + + R ++ +    DFLN +      DP +L
Sbjct: 7   RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLN-TADQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ A    P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G + +N W   K+ QL V D +      F  +
Sbjct: 529 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|23099481|ref|NP_692947.1| single-strand DNA-specific exonuclease [Oceanobacillus iheyensis
           HTE831]
 gi|22777710|dbj|BAC13982.1| single-strand DNA-specific exonuclease [Oceanobacillus iheyensis
           HTE831]
          Length = 771

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/591 (27%), Positives = 285/591 (48%), Gaps = 33/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S  +W      +  +   ++ +   +  ++ ++ + R ++  +  + FL+P I  L   P
Sbjct: 4   SKMKWRY---NQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHH-P 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA +RI +AI N EKI++FGDYD DG +S A+M++ L+      + YIP+R  
Sbjct: 60  FLLKDMEKAVQRIHKAIQNEEKILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +       +G ++IITVD G TS      A   G+D+I+ DHH+ ++    ++
Sbjct: 120 EGYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELGMDLIITDHHEPQTNIPESF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P    +      L   GV F     +          P        L   A+ T+ D
Sbjct: 180 AIIHPKCSPE-YPFNELAGVGVAFKFAEALL------GYFPS-----QFLSYTAIGTIAD 227

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +VPL   NR     GL   R   + GLKALI+   I   +  +++G+ IGP +NA GR+ 
Sbjct: 228 LVPLFDENRVLASYGLKELRATTDVGLKALIQVCQIED-LDEQSIGFSIGPRLNAVGRLQ 286

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L   LL+++D +    +A +++ +N  R+ +   ++ +A+  V ++     +  +IV
Sbjct: 287 DADLAVELLLTEDMEAALEIANEINKINDERKKVVQRIVSEADQIVNSK----PERRIIV 342

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V  + W+ G++G++A+ L  K+ RP+  + +  E+G   GS RSI  FD+          
Sbjct: 343 VSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDL--FEGCMRMR 400

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +    GGH+ AAG+T+   N  +L        +N +         +I G LN   +NI 
Sbjct: 401 DLFTHFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIE 460

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           LI  +    P+G  NP PVF         I+ +     HL+M F  ++S  + AI F   
Sbjct: 461 LIKDISKLAPFGMKNPKPVFQIKEIP-SDIKRIGSKKNHLKMQFR-KNSTRMDAIGFGWG 518

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                 +   +    + + G L +N W G++  QL + D    E   F  +
Sbjct: 519 DA----YNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMKIDEWQLFDYR 565


>gi|167636494|ref|ZP_02394791.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0442]
 gi|170688663|ref|ZP_02879868.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0465]
 gi|254684164|ref|ZP_05148024.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. CNEVA-9066]
 gi|254741549|ref|ZP_05199236.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Kruger B]
 gi|167528087|gb|EDR90884.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0442]
 gi|170667349|gb|EDT18107.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0465]
          Length = 779

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            L   LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYVKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573


>gi|255533564|ref|YP_003093936.1| single-stranded-DNA-specific exonuclease RecJ [Pedobacter heparinus
           DSM 2366]
 gi|255346548|gb|ACU05874.1| single-stranded-DNA-specific exonuclease RecJ [Pedobacter heparinus
           DSM 2366]
          Length = 567

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/577 (28%), Positives = 273/577 (47%), Gaps = 16/577 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
            RWV  L       AL + Q+  I   +A++LV R +S  + A+ +  P +  L  DP +
Sbjct: 3   KRWVQALQGNKETTAL-LAQQLNIDSSLAQILVQRGISSFEEARQYFRPDMGRLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA  RI +AI + EKI+++GDYDVDG  SVAL   F S  +     YIPDR  +G
Sbjct: 61  MKDMDKAIERIDKAINSREKILVYGDYDVDGTTSVALAFSFFSQFTDQIGYYIPDRHKEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + ++     G  LII +DCG  S D + YA +  ID I+ DHH        A A+
Sbjct: 121 YGISTAGIDYANANGISLIIALDCGIKSTDKIAYANSLNIDFIICDHHLPGEVLPAAVAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L   G+ F +        R              LDLV ++   D+V
Sbjct: 181 LDPKRKDCPYPFKELAGCGIGFKLAQAYCLQHRL-----PQEQYERYLDLVMVSIAADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+   NR     GL+        GLKAL++    +   T  ++ + + P INA GR+  +
Sbjct: 236 PIEDENRILAYHGLIKLNSNPCIGLKALMDISGKNKDYTLTDVVFTLAPRINAAGRMDHA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N   ++L+  +    +  ++ +++ N  R+  +  M  +A A +  +C+ +      VV 
Sbjct: 296 NQAVKMLLCTEDNLAQEQSLLINLQNTERKTSDQNMTAEALALI-AECEILINKKTTVVY 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + W+ G++G++A+RL EK+ RP+  ++ + +G   GS RS+ GFD+ + +     E +L
Sbjct: 355 HENWNKGVIGIVASRLTEKYYRPTVVLT-KSNGLLTGSARSVAGFDLYEALLGC--EDLL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           V+ GGH  AAGLT++  + G   + F+      +   +  P   ID  +    ++     
Sbjct: 412 VQFGGHKFAAGLTIKAEDIGFFTERFENIVAATITEDLLCPEISIDNEIRLRQIDGKFQR 471

Query: 495 MLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           ++    P+G  N  PVF      L     VV   HL++  + Q+S   + IAF +     
Sbjct: 472 IIAQMAPFGPHNMAPVFVSHEVFLASKPYVVGTKHLKLAIKQQNSSIFECIAFGMAEEY- 530

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +    +   V   +  N W+  KR QL + +  
Sbjct: 531 --EQLLQPNQPFSVCYTIEENIWKAQKRLQLNIKEIK 565


>gi|269964521|ref|ZP_06178761.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus
           40B]
 gi|269830758|gb|EEZ84977.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus
           40B]
          Length = 579

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   ++A   + QAI   ++I++
Sbjct: 18  SIPPILKRIYINRGITD---LSQLETSARGLHSY-QKLGGIEQAVDLLFQAIKEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCSFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKHNWFAEQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFSLGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   +  +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGNELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       V   DG L     ++ + + L S GP+G   
Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|172035400|ref|YP_001801901.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. ATCC
           51142]
 gi|171696854|gb|ACB49835.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. ATCC
           51142]
          Length = 654

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/583 (29%), Positives = 287/583 (49%), Gaps = 20/583 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           +   RW          +   +  +  +  ++A+V++NR +     A+ ++NP +  L PD
Sbjct: 3   LPDQRWYIASPNPD--QVKMLVAETGLSPLLAQVILNRGIDSPNLAQVYINPEVETL-PD 59

Query: 72  P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P     D   +   + +AI   EKI I GDYD DG  S +L++R L+H   +A   IP R
Sbjct: 60  PLDEFPDLLSSIELLKEAIEIGEKIAICGDYDADGMTSTSLLLRALTHLGGDAYYEIPSR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + DGYG N  ++EKF  EG  +++TVD G  +Y+ ++ A   G+ VI+ DHH +  +  P
Sbjct: 120 MKDGYGINERIVEKFAEEGVGVVLTVDNGIAAYEPIKRAIELGLTVIITDHHDLPEKLPP 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  L   S    L   GV +++ V +     +         + SLL+L  L T+
Sbjct: 180 ADAILNPKLLSIHSPYRGLAGVGVAYILAVTLAEQFNKTE-----EIIDSLLELFTLGTI 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307
            D+ PL+G+NR ++ KGL         G++AL++          +  +++G+ +GP INA
Sbjct: 235 ADLAPLVGVNRRWLKKGLKQLPNSQLAGIQALMQVAGVSEEQKQLKPDDIGFKLGPRINA 294

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+      LL +DD       AM+ + +N  R+ +   + ++A   + T   + ++
Sbjct: 295 VGRIGDPQTAIELLTTDDPGIALERAMQCEQINGKRKGLCEEIEKEAIHLIKTTPINYKK 354

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+VV   +WH G++G++A+RL E++G P F  ++EED      G +    +     + 
Sbjct: 355 DRVLVVINHKWHHGVIGIVASRLVERYGVPVFIGTYEEDDPSKIRGSARGIEEFNIFEAL 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +L K GGH  A G  ++  N     +   +FAH ++      P+ KIDG  N   
Sbjct: 415 VYCDDLLGKYGGHKAAGGFGLKSNNLIAFKERLSQFAHQLLEPHHIKPLVKIDGEANFKQ 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N  L   ++S  P+G  N  PVF  PN K+   R V   HL++    +D + ++AIA+R
Sbjct: 475 LNAQLYQHIDSLQPWGIENAFPVFWTPNVKILEQRTVGKNHLKLVLGQEDGQEMKAIAWR 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          KR+ +   L  NYW G+   +L ++   
Sbjct: 535 FGSYF-------PLPKRLDIAYKLTENYWNGTVNIELEIVGVR 570


>gi|167032095|ref|YP_001667326.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           GB-1]
 gi|166858583|gb|ABY96990.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida
           GB-1]
          Length = 569

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   +     +V+A+   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEALDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    +   A A++NPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLKVLVTDHHLPGQQLPDADAIINPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D+   + +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+RLKE
Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F +     +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 GNFQAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF V      E       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L VN +RG++  QL +    P
Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568


>gi|330975449|gb|EGH75515.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 571

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 286/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFQSNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F +     +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|330896007|gb|EGH28230.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330936896|gb|EGH41027.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 571

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 286/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F +     +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|160883196|ref|ZP_02064199.1| hypothetical protein BACOVA_01165 [Bacteroides ovatus ATCC 8483]
 gi|156111421|gb|EDO13166.1| hypothetical protein BACOVA_01165 [Bacteroides ovatus ATCC 8483]
          Length = 588

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 276/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 20  KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 78

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 79  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 138

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 139 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 198

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 199 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 253

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 254 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 313

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 314 GKEAVDLLTEKDFSIALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 372

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 373 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 429

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V +ID  ++   ++    
Sbjct: 430 LENFGGHTYAAGLSMKVENVDAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 489

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 490 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 549

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 550 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 588


>gi|138896148|ref|YP_001126601.1| single-strand DNA-specific exonuclease [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267661|gb|ABO67856.1| Single-strand DNA-specific exonuclease [Geobacillus
           thermodenitrificans NG80-2]
          Length = 785

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E       + ++  I  ++A++LV R V +   A  FL+P +     DP +L
Sbjct: 7   RWEVDCPDE--QTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDP-LGQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A RR+ +AI   E ++++GDYD DG  S ++M+  L     +   YIP+R  +GY
Sbjct: 64  DGMERAVRRLERAINTGELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +        G  +I+TVD G  + D +  A   G+DVIV DHH+       AYA++
Sbjct: 124 GPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEWGLDVIVTDHHEPGPVLPEAYAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLDLVA+ T+ D+VP
Sbjct: 184 HPKKPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314
           L+G NR    +GL   R     GL+AL  +  I +  +  + +G+ I P +NA GR+G +
Sbjct: 233 LVGENRLLAAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL++DD  E   LA ++D LN+ R+ + + M E+A   V  Q    +   V+VV 
Sbjct: 293 DPAVALLMTDDEGEAARLAQEMDELNRERQQLVAQMAEEAAEMVRRQFPPEEHR-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           G+ W+PG+VG++A++L E+F RP+  +S   E G   GS RSI GFD+    S +    I
Sbjct: 352 GEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDL--FASLSQCRDI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L +     A   +     TP   ID   +   + ++  
Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
              E   P+G  NP P+       ++++R V     H++  F SQ+   + AI F +   
Sbjct: 470 RSFERLAPFGVSNPRPLLLIEEVAVETMRRVGANGAHMKAVF-SQNGAAIDAIGFGLG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   + G  +   G L VN W G  + QL + D +      F  +
Sbjct: 527 --PLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLCDVAVSSCQVFDVR 573


>gi|299148228|ref|ZP_07041290.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_1_23]
 gi|298512989|gb|EFI36876.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           3_1_23]
          Length = 572

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 276/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V +ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVNAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|91226784|ref|ZP_01261437.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus
           12G01]
 gi|91188915|gb|EAS75199.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus
           12G01]
          Length = 579

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   ++A   + QAI   ++I++
Sbjct: 18  SIPPILKRIYINRGITD---LSQLETSARGLHSY-QKLGGIEQAVDLLFQAIKEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCSFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKHNWFAEQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   +  +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGNELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       V   DG L     ++ + + L S GP+G   
Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|24372539|ref|NP_716581.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           oneidensis MR-1]
 gi|24346551|gb|AAN54026.1|AE015540_6 single-stranded-DNA-specific exonuclease RecJ [Shewanella
           oneidensis MR-1]
          Length = 574

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 271/565 (47%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V     +  L   +R     P  +   D AA+ I  A+   + I+I
Sbjct: 19  HLPPLLRQLYARRGVLPSECELVLKGLLR-----PDTMKGLDLAAKLIADAMQLDKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L        +  IP+R   GYG +P ++    ++ AQL+ITV
Sbjct: 74  VGDFDADGATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAQLLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH    E   A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNRILVEAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ Q    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G++ K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F      +       +     T     DG L  + + + +  +L +AGP+G    
Sbjct: 434 LKSGGFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+Q     L AIAF V      +  +Q       
Sbjct: 494 EPLFDGY-FKIIQQRIVGDRHLKLVLETQCGTVMLDAIAFNVALHTWPDATIQHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG+   QL V    P
Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573


>gi|261405419|ref|YP_003241660.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           Y412MC10]
 gi|261281882|gb|ACX63853.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           Y412MC10]
          Length = 800

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/581 (28%), Positives = 291/581 (50%), Gaps = 26/581 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W        I     +    ++P IVA ++ +R + S +  ++FL  +   L  DP
Sbjct: 4   SKYEWRIREAASTI--TERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTF-ELTHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++    +A  RI +A+ + E I+I+GDYD DG +S +LM+  + +   + ++YIP R  
Sbjct: 61  YLMQGMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRYLGASYDIYIPHRSN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++    +G  L+ITVD G ++ + + YA + GIDVIV DHH+       AY
Sbjct: 121 EGYGLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPEVLPEAY 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           AL+NP           L   GV + +   +           +       L +V++ T+ D
Sbjct: 181 ALINPKIPTCPYPFKGLAGVGVAYKLAQAL-----------VGDPPEEWLQIVSIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           ++PL G NR  V  G+   RR    G+++L+E   I    +TA N+ + + P INA GR+
Sbjct: 230 LMPLTGENRVLVKHGIESMRRTRYEGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL ++  +E E LA +LD LN++R+ +   ++++A   V  +    +   VI
Sbjct: 290 DHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWRGQEIPPVI 349

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G+ W+ G+VG++A+++ E+F RP   +    E G   GS RSI GFDI   +     
Sbjct: 350 VLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLSC-- 407

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + ++   GGH  AAG+++ R           ++A + + A     V + D   + S V++
Sbjct: 408 KDVMDHFGGHPSAAGMSLHRDRLAAFEQGLHRYAEDALEAEHLIAVCEADLEASLSEVSV 467

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
            +++ +E  GP+G  N  P   F +  ++ +R +     HL++  + +  E + AI+F  
Sbjct: 468 PILEQMEQLGPFGMANAVPKIVFRDVVIKDVRKIGKEGKHLKLRLQQK-REVIDAISFGW 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               L + L    G  + V G L VN W GS++ QL + D 
Sbjct: 527 G--HLADIL--PVGSVVDVLGELSVNEWNGSRKVQLMIQDI 563


>gi|303236583|ref|ZP_07323165.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella disiens
           FB035-09AN]
 gi|302483236|gb|EFL46249.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella disiens
           FB035-09AN]
          Length = 574

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/586 (28%), Positives = 276/586 (47%), Gaps = 22/586 (3%)

Query: 17  RWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W       E  N A  + +K  I  I+A +L+ R +  +  AK F  P +  L+ +P +
Sbjct: 4   KWNYTPPTPEQTNAAKELGEKLGISPILATLLLRRGIKTESAAKRFFRPQLSDLI-NPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+  A+   E+IM++GDYDVDG  +VAL+  FL     N   YIPDR  +G
Sbjct: 63  MQDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVFNFLRQFYSNIEYYIPDRYDEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++   + G +LII +DCG  + + + YA  QGID I+ DHH   +   PA A+
Sbjct: 123 YGVSKKSIDFAKDNGVKLIIILDCGIKAVEEISYAKEQGIDFIICDHHVPDNNLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R DD      LC  GV F  +         +N       L+ LLD  A++   D+V
Sbjct: 183 LNPKRSDDSYPFKDLCGCGVGFKFMQAFA-----NNNNIAFSRLIPLLDFCAVSIAADLV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL    +  + GL+A++E        ++  ++ + IGP INA GR+  
Sbjct: 238 PVVGENRILAFHGLKQLNQNPSVGLQAIVEICGLTGRELSMSDIIFKIGPRINASGRMEN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL+  D     + A  +D  N  R+ ++  M E+A  +++ + +  +  + IV+
Sbjct: 298 GKESVDLLVERDLATALLEARNIDKYNDKRKDVDRQMTEEA-NQIVERLESQKHQNSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  G++G++A+RL E + RP+  I+  ED    GS RS  GFD+   +       +
Sbjct: 357 YDEHWKKGVIGIVASRLTEIYYRPTIVIT-REDDLATGSARSAVGFDLYSAIENC--SDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH  AAGLT++  N     D FQK+    +          ID V++   +   L 
Sbjct: 414 LLNFGGHTYAAGLTLKWENVKEFRDRFQKYVDEHIEPHQKEATLDIDTVIDFKDITKKLH 473

Query: 494 DMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKRFAPFGPKNEKPLFCTKDVFDFGTSKVVGRAQEHIKLELVDSKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
            +           +   +   +  N ++     QL++    P E  
Sbjct: 534 ES----ARYIKSKRSFDIVYTIEDNVFKKGSS-QLQIEGIRPSESE 574


>gi|225012395|ref|ZP_03702831.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria
           bacterium MS024-2A]
 gi|225003372|gb|EEG41346.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria
           bacterium MS024-2A]
          Length = 565

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/577 (28%), Positives = 273/577 (47%), Gaps = 22/577 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W +       N    ++    +  ++A++L  R ++  + AK+F  P    L  DP ++ 
Sbjct: 3   WYTPPSAPE-NTVEHLSGALGVSPVIAQLLAQRGITSYEEAKNFFRPDWSQLH-DPYLMQ 60

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D   A  RI+QAI   E++M++GDYDVDG  SVAL+  FL     N   Y+PDR  +GYG
Sbjct: 61  DMTVAVNRIIQAIERHERVMVYGDYDVDGTTSVALVYSFLKDKIENLTPYVPDRYKEGYG 120

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            + + ++    EG  LII +DCG  +   + YA + G+D ++ DHH        A A+++
Sbjct: 121 ISIAGIDHAKEEGISLIIALDCGIKANAQIDYANDLGVDFVICDHHLPSENLPKAIAVLD 180

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R D       LC  G+ F ++  + + +          +L   LDLVA A   D+VP+
Sbjct: 181 PKRGDCAYPFKELCGCGIGFKLIQAVQQRMEL-----PQKELFCYLDLVATAIAADIVPI 235

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
           IG NR     G+    +    GL+  ++ +   +P++  +L ++I P INA GR+     
Sbjct: 236 IGENRILTFLGIEQLNQSPRVGLQFFLKSL--KNPVSVTDLVFVIAPRINAAGRMDHGLN 293

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL + D +    +A  ++  N  RR  +  + ++A  +++   ++ Q++   VV   
Sbjct: 294 AVELLAASDVEVALPIARSIEFYNSERRATDERITKEALQQII--LNEQQESFSTVVFHS 351

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++G++A+RL E + RP+  ++  E G   GS RS+ GFD+ K +    E   +++
Sbjct: 352 SWHKGVIGIVASRLIETYYRPTVVLTESE-GVLSGSVRSVRGFDVYKALESCAEF--MIQ 408

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  AAGLT++          F+ +  + +     TP    D VL  + ++  L+ +L
Sbjct: 409 FGGHKYAAGLTLKPEQLEGFKKGFEAYVRSTILKEQQTPSLIYDAVLKLNELSPKLLRIL 468

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPL 553
              GP+G  N  PVF   + K     R+V     HL++         +Q I F +     
Sbjct: 469 NQMGPFGPKNMRPVFVTHHCKDTGGSRLVGKDQTHLKLEIRDSSGIQIQGIGFGMG---- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              +         V   L  N + G    QL+V D  
Sbjct: 525 ANLITIKNQLPFSVLYTLEENEYNGIVSLQLKVKDLK 561


>gi|126660250|ref|ZP_01731366.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. CCY0110]
 gi|126618489|gb|EAZ89242.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. CCY0110]
          Length = 654

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/583 (29%), Positives = 290/583 (49%), Gaps = 20/583 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           +   RW          +   +  +  +  ++A+V++NR +     A+ ++NP++  L PD
Sbjct: 3   LPDQRWYIASPNPD--KVKMLVAETGLSPLLAQVILNRGIDSPNLAQVYINPNVETL-PD 59

Query: 72  P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P     D   + + + +AI   EKI I GDYD DG  S +L++R L+H   +A   IP R
Sbjct: 60  PLDEFPDLFPSIKLLKEAINIGEKIAICGDYDADGMTSTSLLLRALTHLGGDAYYEIPSR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + DGYG N  ++EKF  EG  +I+TVD G  +Y+ ++ A   G+ VI+ DHH +  +  P
Sbjct: 120 MKDGYGINERIVEKFAEEGVGVILTVDNGIAAYEPIKRAVELGLTVIITDHHDLPEKLPP 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  L   S    L   GV +++ + + +   +         + SLL+L  L T+
Sbjct: 180 ADAILNPKLLSIHSPYRGLAGVGVAYILAITLAKQFNKTE-----EIIDSLLELFTLGTI 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307
            D+ PL+G+NR ++ KGL         G++AL++          +  +++G+ +GP INA
Sbjct: 235 ADLAPLVGVNRRWLKKGLKQLPNSQLAGIQALMQVGGVSEEQKQLKPDDIGFKLGPRINA 294

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+      LL +DD       AM+ + +N  R+ +   + ++A   + T   + +Q
Sbjct: 295 VGRIGDPQTAIELLTTDDPGIALERAMQCEQINGKRKGLCEEIEKEAIHLIKTTPINYKQ 354

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+VV   +WH G++G++A+RL E++G P F  ++EED      G +    +     + 
Sbjct: 355 DRVLVVIHHKWHHGVIGIVASRLVERYGVPVFIGTYEEDDPSKIRGSARGIEEFNIFEAL 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +L K GGH  A G  ++  N     +   KFAH ++      P+ KIDG  + + 
Sbjct: 415 VYCDDLLGKYGGHKAAGGFGLKSENLIAFKERLSKFAHQLLEPHHIKPLVKIDGEADFNQ 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N  L   ++S  P+G  N  PVF  PN K+   R V   HL++     D + ++AIA+R
Sbjct: 475 LNAHLYQHIDSLQPWGIQNAFPVFWTPNVKILEQRTVGKNHLKLVLGQDDGQEMKAIAWR 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          KR+ +   L  N+W G+   +L ++   
Sbjct: 535 FGSYF-------PLPKRLDIAYKLTENHWNGNVNIELEIIGVR 570


>gi|238763214|ref|ZP_04624179.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia
           kristensenii ATCC 33638]
 gi|238698487|gb|EEP91239.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia
           kristensenii ATCC 33638]
          Length = 577

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGNNVDYLVPNRFDDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A   GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVELAHAMGIQVLVTDHHLPGETLPAAEAIINPNLTGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG L  + +++   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L AIAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDAIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V    P
Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576


>gi|302185539|ref|ZP_07262212.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. syringae 642]
          Length = 571

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 286/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    D F +     +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFADAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|213969070|ref|ZP_03397209.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tomato T1]
 gi|301384035|ref|ZP_07232453.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058741|ref|ZP_07250282.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tomato K40]
 gi|213926068|gb|EEB59624.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tomato T1]
          Length = 569

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/562 (31%), Positives = 282/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           +L  LLDLVAL +V DVVPL   NR  V +GLM  R  
Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTRAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++  +         + +    WH G++G+LA+RLKE
Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQL-KELPLESMPFGLCLFDAEWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L +AGP+G   P P+
Sbjct: 432 DNFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVRLDGIAFSVDR----DIWPNPNIRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V+  +P
Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568


>gi|167640714|ref|ZP_02398974.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0193]
 gi|177653975|ref|ZP_02936016.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0174]
 gi|254736511|ref|ZP_05194217.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. Western North America USA6153]
 gi|167511286|gb|EDR86672.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0193]
 gi|172081030|gb|EDT66108.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis
           str. A0174]
          Length = 779

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +  +YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEIYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            L   LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573


>gi|153807332|ref|ZP_01960000.1| hypothetical protein BACCAC_01610 [Bacteroides caccae ATCC 43185]
 gi|149129694|gb|EDM20906.1| hypothetical protein BACCAC_01610 [Bacteroides caccae ATCC 43185]
          Length = 572

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/584 (27%), Positives = 272/584 (46%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPITPEQAETSQTLAQELGISPILGQLLVQRGITKAVDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MNDMDIAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 183 LNAKRPDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAFHGLKQLNSNPSVGMKAIIDVCGLSEREITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + + +   IV+
Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLAERRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ F    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVEAFTKRFEDFVSQHILPEQTSAVIDIDAEIDFRDITPRFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 SDLKKFNPFGPDNMKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|117621046|ref|YP_857761.1| single-stranded-DNA-specific exonuclease RecJ [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562453|gb|ABK39401.1| single-stranded-DNA-specific exonuclease RecJ [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 576

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 180/564 (31%), Positives = 280/564 (49%), Gaps = 19/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ ++  +R V        L  S   L+P P  L    +A   + +A+   ++I+I 
Sbjct: 20  LHPLLRQIFASRGVEDPAL---LERSASQLLP-PQRLFGMAQAVPLLAEALTAQKRILIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      + +  +P+R   GYG  P ++E  +  GA+ +ITVD
Sbjct: 76  GDFDCDGATSSALCVLALRAMGGRHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A   G+ V+V DHH    E   A A+VNPN+         L   GV F 
Sbjct: 136 NGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGCDFPSKSLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LRQ            ++   LDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 196 LMAALNTQLRQSGWYERQGLRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRA 255

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL++        + A +LG+ +GP +NA GR+ + +LG   L+SDD      
Sbjct: 256 GRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSLGVACLLSDDLNLARQ 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA ++D LNQ R+ +E  M ++A A +   +  D +  S IV+  + WH G+VGL+A+++
Sbjct: 316 LASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRNEWHQGVVGLVASKV 375

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEK+ RP  A +   + +  GSGRSI G  +   +        G++ K GGHAMAAGLT+
Sbjct: 376 KEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTL 435

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
            + N       F+     +V   + T V   DG L    +++ L +++ ++GP+G   P 
Sbjct: 436 PKANIEAFGRAFEAVIGELVTPELLTGVLLTDGELLPDELSLELAELIRASGPWGQAFPE 495

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           P+F      L   R+V   HL+M   +     + AIAF V      +    +  KR+ + 
Sbjct: 496 PLFDGEFV-LVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLQRWPD----ASVKRVRLV 550

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN WRG++  QL V      
Sbjct: 551 YRLDVNEWRGNRNVQLLVEHLEAA 574


>gi|300718201|ref|YP_003743004.1| Single-stranded-DNA-specific exonuclease [Erwinia billingiae Eb661]
 gi|299064037|emb|CAX61157.1| Single-stranded-DNA-specific exonuclease [Erwinia billingiae Eb661]
          Length = 572

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 193/561 (34%), Positives = 287/561 (51%), Gaps = 17/561 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+ ++R V +  A+  L    + L P    L+  ++AA  + +A+ ++  IMI 
Sbjct: 22  LHPLLRRLYLHRGV-LQAAE--LERGAKNLHP-FHSLSGIERAAEILQKALADNLCIMIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALTVLALRSMGGRNIKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V++ DHH        A A+VNPN  D       L   GV F 
Sbjct: 138 NGISSHAGVDLAHEKGISVVITDHHLPGETLPAAEAIVNPNLEDCAFPSRSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           +++ +   LR    V +  +L  LLDLVAL TV DVVPL   NR  V +GL   R  +  
Sbjct: 198 LMLALRARLRDSG-VEVLPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCR 256

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            G+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +  MLA +
Sbjct: 257 AGIKALLEIANRDPRQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIAQARMLASE 316

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           LD LNQ R+ +E  M  +A A     +  D      I +    WH G+VG+LA+RLKE+F
Sbjct: 317 LDALNQTRKEIEQGMQTEALALCDALESKDEALPLGIAMYHPEWHQGVVGILASRLKERF 376

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVN 452
            RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL++E  N
Sbjct: 377 HRPVIAFAPSGDGTLKGSGRSIAGLHMRDALERLDTLHPGLIIKFGGHAMAAGLSLEEAN 436

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
           F R    F       + A     V   DG L A  + +   ++L  AGP+G   P P F 
Sbjct: 437 FDRFRQHFGDLVGEWLDAEALQGVVWSDGELMAQELTLTTAELLREAGPWGQAFPEPQFD 496

Query: 513 FPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
               KL   R+V   HL++  E       L  IAF +  T   +       +++ +   L
Sbjct: 497 GK-FKLIQQRLVGERHLKVMIEPLGGGPLLDGIAFNIDTTQWPD----PSVRQVELAYKL 551

Query: 572 CVNYWRGSKRCQLRVLDASPV 592
            +N +RG++  QL +    P+
Sbjct: 552 DINEFRGNRSVQLIIDHLWPL 572


>gi|229169152|ref|ZP_04296867.1| Exonuclease RecJ [Bacillus cereus AH621]
 gi|228614380|gb|EEK71490.1| Exonuclease RecJ [Bacillus cereus AH621]
          Length = 773

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + + R ++ +    DFLN +      DP +L
Sbjct: 7   RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLN-TADQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+ A    P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  +  L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDADLESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G + +N W   K+ QL V D +      F  +
Sbjct: 529 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|308270359|emb|CBX26971.1| hypothetical protein N47_A10000 [uncultured Desulfobacterium sp.]
          Length = 570

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 185/580 (31%), Positives = 286/580 (49%), Gaps = 20/580 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     Q        I++      ++A +LVNR + S + A  FLN SI  L   P  +
Sbjct: 4   KWHI--HQPDKKLVDKISKAIKCSPVIASILVNRGIFSAEEAHAFLNISIDNLR-SPFSI 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D + AA RI  AI   EKI+IFGDYD DG  S AL+M F  H   + + YIPDRI +GY
Sbjct: 61  KDMEIAANRIYDAILRREKILIFGDYDADGVTSTALLMEFFRHTKADVSYYIPDRIKEGY 120

Query: 136 GPNPSLM-EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G     + E  I     LIITVDCGS+S +A+  A +  ID+I+ DHH +  +   A A+
Sbjct: 121 GLQEKHIAEIAIPGNIDLIITVDCGSSSNEAVAAANDADIDIIITDHHILPEKLPEALAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCD 252
           ++P R D  SG  HL   GV F +++ + + LR  +        +L +L DL+AL TV D
Sbjct: 181 ISPKRPDCNSGLSHLAGVGVAFYLVIYLRKYLRDMHFWDRYPEPNLKNLCDLIALGTVAD 240

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +VPL+  NR +   GL +       G+ AL++  N    I +E++ + + P INA GRI 
Sbjct: 241 MVPLLEENRVFTRIGLDLINSGSRIGISALLKAGNYRDTIDSEDIAFRLAPRINAMGRID 300

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +     LL++ +    + +A +++ +N  R+ +E  + ++    +     DI  +  IV
Sbjct: 301 NAKEAVELLLTGNPYTADNIARQMNQMNTKRQTIEKKVFDEIIEYI-QNNPDILLSKSIV 359

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH GI+G++A+RL EKF RP      +E     GSGRS   F++ + ++      
Sbjct: 360 LSHHGWHEGILGIVASRLVEKFHRPVVLFVQKET-IAKGSGRSTPYFNLYEGLAAC--SD 416

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL   GGH+MAAG+ ++  N       F+     +       P   +D  L    ++   
Sbjct: 417 ILEAFGGHSMAAGVKIKIDNLSLFKQEFENAVLKMSQPEDLFPDIYVDHELIFDDISTGF 476

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET---LQAIAFRVY 549
           +D LES  P+GAGNP P+F   N  + S  +V   H +M   S   +      AI F + 
Sbjct: 477 LDELESLKPFGAGNPEPIFIARNINVISSDIVGENHRRMVLSSSSGKKDNYYNAIHFNID 536

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            +   + + +       +   L  N W G+K  QL + + 
Sbjct: 537 KSLPEKTIYEQ------IAFRLRWNRWNGNKSIQLVIENI 570


>gi|29349347|ref|NP_812850.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298384880|ref|ZP_06994439.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           1_1_14]
 gi|29341255|gb|AAO79044.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298262024|gb|EFI04889.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           1_1_14]
          Length = 572

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/584 (28%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPITPEQAETSQTLAQELGISPILGQLLVQRGITKAGDAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYASETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +          N       L+ LLDLVA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFA-----INNGIEFHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + + +   IV+
Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLSERRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNIKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|107103239|ref|ZP_01367157.1| hypothetical protein PaerPA_01004308 [Pseudomonas aeruginosa PACS2]
 gi|116051722|ref|YP_789439.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|296387767|ref|ZP_06877242.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa PAb1]
 gi|313109131|ref|ZP_07795102.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa 39016]
 gi|115586943|gb|ABJ12958.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310881604|gb|EFQ40198.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa 39016]
          Length = 571

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/564 (31%), Positives = 279/564 (49%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++AR+   R V        L+  +  L+P    L   ++    +V A+   ++I+I
Sbjct: 17  DLPPLLARLYAARGVRCAEE---LDKGLARLIP-FQRLKGIEEGVALLVDALEGGQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + ++ +  L        +  +P+R   GYG  P ++   + +   L++TV
Sbjct: 73  VGDFDADGATASSVGVLALRMLGAAWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +Q A   G+ V+V DHH    E   A A++NPN+         +   GV+F
Sbjct: 133 DNGISSVDGVQAAKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ +   LR+ +          +L  LLDLVAL +V DVVPL   NR  V +GL   R
Sbjct: 193 YVMLALRARLRELDWFARRGLKEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+AL+E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRALLEVAGRPPVRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++  +    Q    + +    WH G++G+LA+RL
Sbjct: 313 DMAVQLDQLNQDRKAIEQGMQREALAQL-KELSLEQLPFGLCLFDADWHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   DG   GS RSI GF I   +    A   G++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
            + NFG     F       +           DG L+    ++ L   L  AGP+G   P 
Sbjct: 432 PQENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   R+V   HL++  +S+     L  IAF +              +   +
Sbjct: 492 PMFHG-VFQLVQQRIVGERHLKLVLKSECGSLQLDGIAFNIDREQWP----NPTVRWAEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG +  QL ++  +P
Sbjct: 547 AYKLDVNEFRGQESVQLMIVHMAP 570


>gi|253570306|ref|ZP_04847715.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp.
           1_1_6]
 gi|251840687|gb|EES68769.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp.
           1_1_6]
          Length = 572

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/584 (28%), Positives = 276/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYQPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYASETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +          N       L+ LLDLVA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFA-----INNGIEFHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + + +   IV+
Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLSERRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V  ID  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNIKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|15598920|ref|NP_252414.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa PAO1]
 gi|218889999|ref|YP_002438863.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa LESB58]
 gi|254236635|ref|ZP_04929958.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa C3719]
 gi|254242416|ref|ZP_04935738.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa 2192]
 gi|9949891|gb|AAG07112.1|AE004791_9 single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa PAO1]
 gi|126168566|gb|EAZ54077.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa C3719]
 gi|126195794|gb|EAZ59857.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa 2192]
 gi|218770222|emb|CAW25984.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa LESB58]
          Length = 571

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/564 (31%), Positives = 279/564 (49%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++AR+   R V        L+  +  L+P    L   ++    +V A+   ++I+I
Sbjct: 17  DLPPLLARLYAARGVRCAEE---LDKGLARLIPY-QRLKGIEEGVALLVDALEGGQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + ++ +  L        +  +P+R   GYG  P ++   + +   L++TV
Sbjct: 73  VGDFDADGATASSVGVLALRMLGAAWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +Q A   G+ V+V DHH    E   A A++NPN+         +   GV+F
Sbjct: 133 DNGISSVDGVQAAKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ +   LR+ +          +L  LLDLVAL +V DVVPL   NR  V +GL   R
Sbjct: 193 YVMLALRARLRELDWFARRGLKEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+AL+E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRALLEVAGRPPVRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++  +    Q    + +    WH G++G+LA+RL
Sbjct: 313 DMAVQLDQLNQDRKAIEQGMQREALAQL-KELSLEQLPFGLCLFDADWHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   DG   GS RSI GF I   +    A   G++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
            + NFG     F       +           DG L+    ++ L   L  AGP+G   P 
Sbjct: 432 PQENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   R+V   HL++  +S+     L  IAF +              +   +
Sbjct: 492 PMFHG-VFQLVQQRIVGERHLKLVLKSECGSLQLDGIAFNIDREQWP----NPTVRWAEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG +  QL ++  +P
Sbjct: 547 AYKLDVNEFRGQESVQLMIVHMAP 570


>gi|119475793|ref|ZP_01616145.1| RecJ exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450420|gb|EAW31654.1| RecJ exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 584

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 182/568 (32%), Positives = 277/568 (48%), Gaps = 22/568 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  +R VS D         +  L+  P  L     A  RI QA+ + ++I++
Sbjct: 20  HLHPLLQRIYGSRGVSSDAQVK---TDLSSLLK-PDSLKGLPTAVDRIHQALISHQRILV 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L        +  +P+R   GYG  P ++E        LIITV
Sbjct: 76  VGDFDADGATSSALAVMALRSMGATFVDFLVPNRFDYGYGLTPEIVEVAKQFSPDLIITV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A   GIDV+V DHH   SE   A A+VNPN+        +L   GVVF
Sbjct: 136 DNGISSISGVDEANRAGIDVVVTDHHLPGSELPKACAIVNPNQPGCEFTSKNLAGVGVVF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V+  +   LR  +          ++   LDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 196 YVMTALRSQLRSCHWFSDKGLDEPNMADYLDLVALGTVADVVPLDHNNRILVAQGLRRIR 255

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+K+L+   N S   + + +LG+ +GP +NA GR+ + +LG + L+++D     
Sbjct: 256 AGRSRPGIKSLLNIANRSEHRLVSSDLGFALGPRLNAVGRLDDMSLGIQCLMTNDENLAS 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
            +A ++D LNQ+R+ +E +M ++A  ++     D         +    WH G++G+LA+R
Sbjct: 316 EIARQMDDLNQDRKSIEGSMQQEALNQLQNIDVDESSLPFGLCLYNGNWHQGVIGILASR 375

Query: 390 LKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGL 446
           +KE++ RP  A +  +E+G   GS RSI G  I   +    A    IL K GGHAMAAG+
Sbjct: 376 IKERYHRPVIAFADSDEEGMIKGSARSIPGLHIRDALDAVAASHPHILSKFGGHAMAAGM 435

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++E+  +      F +     +       +   DG L ++ +N+ L  +L   GP+G   
Sbjct: 436 SLEKQYYHEFETAFDREVRRQLTEDDLQAIIFSDGELASADINLDLAQLLRDGGPWGQHF 495

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET--LQAIAFRVYGTPLGEFLMQSRGKR 564
           P P+F      L   R+V   HL+M     D +   + AIAF V      E     +   
Sbjct: 496 PEPMFDGT-FTLLQQRIVGEKHLKMVLGVGDDKQQIIDAIAFNVDT----ECWPNPQATH 550

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + V   L VN +RG +  QL V   S V
Sbjct: 551 VAVAYKLDVNDFRGKQTVQLLVDHISVV 578


>gi|229062104|ref|ZP_04199429.1| Exonuclease RecJ [Bacillus cereus AH603]
 gi|228717256|gb|EEL68931.1| Exonuclease RecJ [Bacillus cereus AH603]
          Length = 773

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E       +  K  +  +V  + + R ++ +    DFLN +      DP +L
Sbjct: 7   RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLN-TADQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  ++      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVVLTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  +  L+SIR +    +HL+M    +   TL  I F     
Sbjct: 470 EEMQKLAPFGVGNPKPRIAVKDADLESIRAIGSDGSHLKMALR-EGQATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G + +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|330950728|gb|EGH50988.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           Cit 7]
          Length = 571

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DVWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|269959608|ref|ZP_06173989.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio harveyi 1DA3]
 gi|269835666|gb|EEZ89744.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio harveyi 1DA3]
          Length = 579

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 277/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   DKA   + QAI   ++I++
Sbjct: 18  SIPAILKRIYINRGITD---VAQLETSARGLHSY-QQLGGIDKAVELLFQAIDEKKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKQNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   ++ +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F       +       V   DG L     ++ + + L S GP+G   
Sbjct: 434 TIKEQDFERFSRLFDDVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|197285861|ref|YP_002151733.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis HI4320]
 gi|227356362|ref|ZP_03840750.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis ATCC
           29906]
 gi|194683348|emb|CAR44055.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis HI4320]
 gi|227163472|gb|EEI48393.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis ATCC
           29906]
          Length = 577

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 185/584 (31%), Positives = 289/584 (49%), Gaps = 22/584 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
           +    +  + +A A+ +  ++  ++ ++  NR ++ +     L  S++ L+     L   
Sbjct: 4   IEPTLRRRVAKATALPE--SLDPLLRQIYANRGITSE---TQLERSLKGLLHY-QDLNGI 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137
           D A   +V+A+    +I+I GD+D DGA S AL ++ L        + +IP+R  DGYG 
Sbjct: 58  DVAISLLVEALKLQSRIVIVGDFDADGATSTALAIKALRQMGFQQVSYHIPNRFDDGYGL 117

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +P ++     +G  LIITVD G +S++ +  A   GI V+V DHH        A A++NP
Sbjct: 118 SPQVVHDVAKKGVDLIITVDNGISSFEGVDVAHEYGIRVLVTDHHLPGHSLPQADAIINP 177

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDV 253
           N  D       L   GV F ++  +   L +            ++   LDLVAL TV DV
Sbjct: 178 NLADCAFLSKSLAGVGVTFYLMTALRAELEKQGWFTAQGLARPNMADYLDLVALGTVADV 237

Query: 254 VPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           VPL   NR +V +GL   R  +   G+KAL E    + S + + +LG+ +GP +NA GR+
Sbjct: 238 VPLDENNRIFVYEGLRRIRAGRCCAGIKALTEVSRKTLSQLVSSDLGFALGPRLNAAGRL 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASV 370
            + ++G  LL+++D      +A +LD LNQ RR +E+ M E+A               + 
Sbjct: 298 DDMSVGVALLLTNDIGVAREIANELDGLNQTRREIEAGMQEEASTIFRQFITTQDDLPNG 357

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV- 429
           + +   +WH G+VG+LA+R+KEK  RP  A +   DG   GSGRSI G  +   +     
Sbjct: 358 LAIYHPQWHQGVVGILASRIKEKLHRPVIAFAPSGDGLLKGSGRSIHGVHLRDALERLNT 417

Query: 430 -EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
              G++VK GGHAMAAGL++E   F      F      +V A     V   DG L+ S +
Sbjct: 418 LNPGLMVKFGGHAMAAGLSLEEDKFPLFQRHFSALMAELVSAEQLQGVILTDGELSDSQL 477

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFR 547
           ++ + +ML  AGP+G   P P+F      L   R+V   HL+M  +  +S   + AIAF 
Sbjct: 478 SLPIAEMLREAGPWGQAFPEPLFDGK-FTLLQQRIVGSKHLKMMLQPINSHVMIDAIAFN 536

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           V      +    +  K + +   L VN +RG +  QL V    P
Sbjct: 537 VDVNIWPD----NSIKTVELAYRLDVNEFRGQRNAQLLVEHIWP 576


>gi|196039251|ref|ZP_03106557.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           NVH0597-99]
 gi|228917045|ref|ZP_04080605.1| Exonuclease RecJ [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|196029878|gb|EDX68479.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           NVH0597-99]
 gi|228842652|gb|EEM87740.1| Exonuclease RecJ [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 779

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|238018953|ref|ZP_04599379.1| hypothetical protein VEIDISOL_00813 [Veillonella dispar ATCC 17748]
 gi|237864437|gb|EEP65727.1| hypothetical protein VEIDISOL_00813 [Veillonella dispar ATCC 17748]
          Length = 660

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 188/584 (32%), Positives = 290/584 (49%), Gaps = 24/584 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           I   RW      +       + ++  +  IVA+++VNR++ +D  + FL  S+  L+ DP
Sbjct: 2   IKKKRWRISTSDKEQENI--LIRELGVNPIVAKLMVNRHIDVDEGRKFLQGSLSDLL-DP 58

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D A   + + I N + I+I+GDYDVDG  + +++ RFL     +   YIP+R  
Sbjct: 59  FALKDMDVAVSLVQETIENHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +E  I +G  L+ITVDCG +SYD ++   ++ ID+I+ DHH        A 
Sbjct: 119 EGYGLNFEALEHLIEQGTSLVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDLIPRAK 177

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  + D      +L   GV F +   ++               L  LD+VAL TV D
Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKYGEWYLDDLDIVALGTVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR  V  GL       N G+K LI+        IT+ ++G+ + P +NA GR+
Sbjct: 231 VVPLVGENRIIVKAGLEKMNSHPNLGIKKLIDVAGLHDRTITSGHIGFTLAPRLNAAGRV 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL++DD+   E +A +L+  N+ R+ +E  + E A   V  Q        V 
Sbjct: 291 THATRAVELLVTDDADMAEAIAEELNETNRERQELEWNIHELARIDVANQGHKA--DYVT 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV G+ WHPG++G++A+RL E+F +P+  IS  + G G GS RSI+GF+I   +     E
Sbjct: 349 VVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L++ GGHA AAG +++      L D    +    V      PV  ID  L    +++ 
Sbjct: 406 DVLLQFGGHAAAAGFSIDANRIDELRDRLTAYCKEHVTPEEYIPVVAIDAELPVDDIDVD 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           +ID + +  PYG  N  PVFA     +Q I ++     H ++  E+    TL AIA+   
Sbjct: 466 IIDRVSALEPYGMANSTPVFAVMEATVQDIMLMGQLKNHCKVILETSSG-TLDAIAWNRP 524

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                 F     G  + V   L  N W+G    QL +    P+ 
Sbjct: 525 DL----FKTIFVGTVVKVAFSLQKNEWQGMVSPQLMIQAIEPLT 564


>gi|294673310|ref|YP_003573926.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           ruminicola 23]
 gi|294471730|gb|ADE81119.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           ruminicola 23]
          Length = 573

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/585 (28%), Positives = 275/585 (47%), Gaps = 22/585 (3%)

Query: 16  FRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W       E    A  + +K  +  I+A +L+ R +  +  AK F  P +  L+ DP 
Sbjct: 3   FKWNYQPPTSEQQTAAKELGEKIGMSPILANLLIQRGIKTESAAKRFFRPMLNELI-DPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+IM++GDYDVDG  +VAL+ +FL     N   YIPDR  +
Sbjct: 62  LMNDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVYKFLQQFYSNIEYYIPDRYEE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   +     +G +LII +DCG  + + + YA + GID I+ DHH    E   A A
Sbjct: 122 GYGISKKGLHYAAEKGIKLIIVLDCGIKAIEEIAYAKSLGIDFIICDHHVPDDELPNAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R D       LC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKREDSTYPFKDLCGCGVGFKFMQAFAK-----NNGIPFSRLIPLLDFCAVSIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VP++G NR     GL    +  + GLKA+I+        IT  ++ + IGP INA GR+ 
Sbjct: 237 VPIMGENRILAYHGLKQLNQSPSVGLKAIIDICGLTGREITMSDIVFKIGPRINASGRMQ 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D  +    A  ++  N+ R+ ++  M E+A  +++ + +  +  + IV
Sbjct: 297 NGTEAVDLLVEKDLNKALAEANHINEYNEQRKDVDKQMTEEA-NQIVEKLESQKHHASIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++    G   GS RS+ G+D+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTELYYRPTVVLTKFN-GIATGSARSVAGYDVYDAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGH  A GL+++  N       FQK+    +    T     ID V++   V   L
Sbjct: 413 LLENFGGHTYAVGLSLKIENIPEFRSRFQKYVMEHIQPEQTEATLDIDAVIDFKDVTKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G  NP P+F   N     + +VV     H+++     + S  L  IAF  
Sbjct: 473 HNDLKKFAPHGPDNPKPLFCTRNVYDYGTSKVVGRQQEHIKLELVDSKSSNVLNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++     QL++ D  P E
Sbjct: 533 SAS----ARYIKSKRSFDIVYTIEDNIYK-RTEVQLQIEDIQPSE 572


>gi|189463120|ref|ZP_03011905.1| hypothetical protein BACCOP_03831 [Bacteroides coprocola DSM 17136]
 gi|189430099|gb|EDU99083.1| hypothetical protein BACCOP_03831 [Bacteroides coprocola DSM 17136]
          Length = 572

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/585 (28%), Positives = 277/585 (47%), Gaps = 22/585 (3%)

Query: 15  GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72
            ++W       E    A A+ +   I  I+ R+L+ R ++    AK F  P +  L  DP
Sbjct: 2   NYKWNYQPPTLEQREAARALAKDIGISPILCRLLLERGITSTAEAKQFFRPQLNELH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D   A  R+ +A+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FLMKDMSIAVERLNKAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G +LII +DCG  + + + YA  +GID I+ DHH       PA 
Sbjct: 121 EGYGVSKKGVDYAAETGVKLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP R D      HL   GV F  +          N       L  LLDLVA++   D
Sbjct: 181 AILNPKRFDSTYPYDHLSGCGVGFKFMQAFA-----INNGIEFHQLTPLLDLVAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI
Sbjct: 236 IVPIMGENRVLAYHGLRQLNSNPSIGLKAIIDVCGLSEREITMSDIVFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LLI  D Q     + +++  N+ R+ ++ +M E+A  K++   + + +   I
Sbjct: 296 QNGKKAVDLLIEKDFQAALEKSNQINQFNETRKDLDKSMTEEA-NKIVDHLEKLSERRSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WH G++G++A+RL E + RP+  ++  +     GS RS+ GFD+ K +      
Sbjct: 355 VIYNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+++  + +    T+    ID  L+   +   
Sbjct: 412 DLLENFGGHTYAAGLSMKIENVPEFTRRFEQYVTDHILPEQTSATIDIDAQLDFRDITPK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
               L+   P+G  NP PVF+  N     + +VV     H+++     + +  +  IAF 
Sbjct: 472 FFFDLKKFNPFGPDNPKPVFSTLNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +       +  ++   +  N  +     QL++ D  P 
Sbjct: 532 QS----SQARYIKTKQSFNICYTIEENTHK-RGEIQLQIEDIKPS 571


>gi|257866155|ref|ZP_05645808.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus EC30]
 gi|257872485|ref|ZP_05652138.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus EC10]
 gi|257800089|gb|EEV29141.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus EC30]
 gi|257806649|gb|EEV35471.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus EC10]
          Length = 758

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/584 (30%), Positives = 283/584 (48%), Gaps = 29/584 (4%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCD 79
               E       + Q+  IP+ +  +L  RN+ + +    FL+  ++ L  DP +  D  
Sbjct: 3   PQESETTPVFKELIQERKIPERIGALLWQRNIRTAEALDAFLSTDLQYLH-DPFLFHDMA 61

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           KA  RI +AI N E+I+I+GDYD DG  S  ++   L      A  Y+P+R  DGYGPN 
Sbjct: 62  KAVERIHEAILNGERILIYGDYDADGITSTTVLKETLELLGAEAEYYLPNRFTDGYGPNL 121

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
           ++ +  I  G QLIITVD G + ++A+ YA  QG+DVIV DHH++ +E   A+A+V+P  
Sbjct: 122 TVYQDKIAAGTQLIITVDNGVSGHEAIAYAQGQGVDVIVTDHHELPAELPEAFAIVHPRH 181

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
                  G L   GV F V   +   +            + LLDLVA+ T+ D+V L   
Sbjct: 182 PQGNYPFGDLAGVGVAFKVACALLEEVP-----------VELLDLVAIGTIADMVSLTDE 230

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGS 318
           NR  V  GL + ++    GL  L+         +   ++G+ +GP +NA GR+ + N   
Sbjct: 231 NRLLVSNGLKMIQQSDRIGLNELLSVSGLKKQTVNETDIGFAVGPRLNAIGRLEDPNPAV 290

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
           RLL + D +E   LA  LD +NQ R+     ++++A+ K+           V +V GD W
Sbjct: 291 RLLTTFDEEEAVSLAQTLDTINQQRKTFVEEIMKEAQEKI------DPANHVHLVVGDHW 344

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H G++G++A R+ +  G+P   ++ +E+G   GSGRSI   ++      +  + +    G
Sbjct: 345 HEGVLGIVAGRIMQSTGQPVIVLTKKENGLAKGSGRSIAALNL--FEMLSTMKDMFTSFG 402

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH  A GL++   +   L     ++       L       ID  L  + V+I+ I+ L+ 
Sbjct: 403 GHHAAVGLSIPIDHLDMLQAQMNRYVEENGIDLSQGIPLAIDEELPLTEVSISFIESLKV 462

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G  NP P F F N   Q+ R +     HL++    + +  L  I F       G+ 
Sbjct: 463 LAPFGTDNPLPKFLFSNLMTQNARQIGSENQHLKLVMSDESNTQLDVIGFG-----FGKD 517

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           L+     R+ + G L +N W G+K+ QL + D +      F  +
Sbjct: 518 LVAFENDRLSIVGQLSINEWNGNKKPQLMLDDFAVEGIQLFDYR 561


>gi|226328244|ref|ZP_03803762.1| hypothetical protein PROPEN_02137 [Proteus penneri ATCC 35198]
 gi|225202977|gb|EEG85331.1| hypothetical protein PROPEN_02137 [Proteus penneri ATCC 35198]
          Length = 577

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/581 (30%), Positives = 279/581 (48%), Gaps = 24/581 (4%)

Query: 26  GINRALAITQKH----AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
                  I Q       +  ++ ++  NR ++ +     L  S++ L+     LT    A
Sbjct: 5   EPTLRRRIAQATQLPDNLDPLLRQIYANRGITSE---VQLERSLKGLLHY-QALTGIKTA 60

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPS 140
              +++A+    +I+I GD+D DGA S AL ++ L        + +IP+R  DGYG +P 
Sbjct: 61  ISLLIEALKQQSRIVIVGDFDADGATSTALAIKALRQMGFKQVSYHIPNRFDDGYGLSPQ 120

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
           ++     +G  LIITVD G +S++ ++ A   GI V++ DHH        A A++NPN  
Sbjct: 121 VVHDVAKKGVDLIITVDNGISSFEGVETAHEYGIRVLITDHHLPGQTLPAADAIINPNLS 180

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPL 256
           D       L   GV F ++  +   L +            ++   LDLVAL TV DVVPL
Sbjct: 181 DCPFLSKALAGVGVTFYLMTALRAELEKQGWFEQQNLPRPNMADFLDLVALGTVADVVPL 240

Query: 257 IGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
              NR +V +GL   R  +   G+KAL E      S + + +LG+ +GP +NA GR+ + 
Sbjct: 241 DENNRIFVYEGLRRIRAGRCCVGIKALTEVSRKELSQLVSSDLGFSLGPRLNAAGRLDDM 300

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVV 373
           ++G  LL++D+      +A +LD LNQ RR +E+ M E+A               + + +
Sbjct: 301 SVGVALLLTDNIGSAREIANELDGLNQTRREIEAGMQEEASTIFRQFMGTQHDLPNGLAI 360

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EE 431
               WH G+VG+LA+R+KEK  RP  A +   DG   GSGRSI G  +   +        
Sbjct: 361 YHPEWHQGVVGILASRIKEKLHRPVIAFAPSGDGLLKGSGRSISGVHLRDALERLNTLNP 420

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
           G+++K GGHAMAAGL++E   F      F      +V       V   DG L  + +++ 
Sbjct: 421 GLMLKFGGHAMAAGLSLEEDKFPLFQRHFSSLMSELVSDEQLQGVILSDGELTENQLSLP 480

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYG 550
           + +ML  AGP+G   P P+F      L   R+V   HL+M  +  +S   + AIAF V  
Sbjct: 481 IAEMLREAGPWGQAFPEPLFDGK-FTLLQQRIVGSKHLKMMLQPVNSHLMIDAIAFNVDI 539

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               +    +  K + +   L VN +RG +  QL V    P
Sbjct: 540 NIWPD----NSIKTVELAYRLDVNEFRGQRNAQLLVEHIWP 576


>gi|293372350|ref|ZP_06618735.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus
           SD CMC 3f]
 gi|292632792|gb|EFF51385.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus
           SD CMC 3f]
          Length = 572

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQTETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V +ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|237719156|ref|ZP_04549637.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp.
           2_2_4]
 gi|229451535|gb|EEO57326.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp.
           2_2_4]
          Length = 572

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V +ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVNAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 SDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|71735675|ref|YP_273626.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556228|gb|AAZ35439.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 571

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 283/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++   GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISNFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|108761402|ref|YP_632854.1| single-stranded-DNA-specific exonuclease RecJ [Myxococcus xanthus
           DK 1622]
 gi|108465282|gb|ABF90467.1| single-stranded-DNA-specific exonuclease RecJ [Myxococcus xanthus
           DK 1622]
          Length = 573

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/587 (31%), Positives = 303/587 (51%), Gaps = 30/587 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW+            ++  + ++  + A+VL++R   + + A  FL+  +  L PDP  +
Sbjct: 5   RWLL--PDVVEQEVASLAGELSLHPLAAKVLLHRGYRTPESASAFLSDRLADL-PDPFRM 61

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
                A  RI++AI + EK+ ++GDYDVDG  S +L+  F+         YIP R+ +GY
Sbjct: 62  KGMPGAVDRIIRAIRSREKVTLYGDYDVDGVCSTSLLYLFMKELGAPPATYIPHRLDEGY 121

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +E+   EG ++++T+DCG TS   +  A   G+DV+V+DHH V     PA A++
Sbjct: 122 GLNVGAVERIAAEGTRVLVTLDCGITSVAEITRAKELGLDVLVVDHHTVPPTLPPAVAVL 181

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253
           NP++         LCAAGV F   + I + LR +         +L S++DLVALATV DV
Sbjct: 182 NPHQPGCEYPTKALCAAGVAFNFCMGIRKRLRDEGFFATRKEPNLRSMMDLVALATVADV 241

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRI 311
           VPL G NR  V  GL        PG++AL E   +     +TA  +G+ +GP INA GR+
Sbjct: 242 VPLTGANRILVTHGLQELSAGRRPGVRALKEVAGMDPDASVTAGQVGFRLGPRINAAGRL 301

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            +++LG +LL S+  +    LA  LD  N  R+ +ES++L QA      Q + ++ A  +
Sbjct: 302 HDASLGLQLLCSESPETARSLAAVLDRANAERQGIESSILTQAL----AQAESLKDARGL 357

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WHPG++G++A+R+ E+F RP+  +  ++ G G GS RSIE F +   +S   E 
Sbjct: 358 VLYDEGWHPGVIGIVASRVVERFYRPTVMVGVKD-GVGKGSARSIEAFHLHDALSGCAE- 415

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L + GGH  AAGLT++        + F+K A+  +      P  ++D V+N + ++  
Sbjct: 416 -LLTRFGGHKHAAGLTIDAERLPAFREAFEKIAYQRLTPEDLIPRCRVDAVVNPNELDAH 474

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV------NLAHLQMTFESQDSETLQAIA 545
            ++ L+  GP+G GNP PV      ++   RV+         HL++     D+  L AI 
Sbjct: 475 AVESLQRLGPFGQGNPEPVLVLRR-QVARPRVLQPKSGTGSGHLKLAL--ADAPELDAIG 531

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           F +                + +      + +RG ++  LR+ D    
Sbjct: 532 FNMADR------ATLVDGPVDLAFQAGFDTFRGQRKLSLRLKDLRVA 572


>gi|66044546|ref|YP_234387.1| RecJ exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63255253|gb|AAY36349.1| RecJ exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 571

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF      F +     +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|86147404|ref|ZP_01065717.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. MED222]
 gi|85834832|gb|EAQ52977.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. MED222]
          Length = 578

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/568 (31%), Positives = 280/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ V+R +        L  + + L      L   D A   + +AI   ++I+I
Sbjct: 18  HLPDLLKRIYVSRGIDSADQ---LETAAKGLHSY-QKLGGIDAAVELLFKAIQQQKRIII 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIELGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +++A  +G+DV+V DHH   SE   A A+VNPN          L   GV F
Sbjct: 134 DNGVSSIDGVRFAKEKGLDVLVTDHHLPGSELPIADAMVNPNLESCAFPSKSLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+      +      L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     +       S + +    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G   GS RSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F R    F       +       +   DG L     ++   + L S GP+G   P
Sbjct: 434 IMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAETLRSGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K +H+   L +N +RG++  QL +    
Sbjct: 549 KTVHLAFKLDINEFRGNQSLQLMIDHIE 576


>gi|298480254|ref|ZP_06998452.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D22]
 gi|298273535|gb|EFI15098.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D22]
          Length = 572

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V +ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|159029095|emb|CAO90084.1| recJ [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/590 (27%), Positives = 289/590 (48%), Gaps = 21/590 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL- 73
            RW          +   + ++  +  ++A +L+NR +     AK +++P    ++P PL 
Sbjct: 8   QRWYIAATNP--EKIEGLAREMGLSSLLATILINRGIDTPEIAKTYIDPE-ADILPSPLG 64

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
              D +K+   +V+AI + +KI I GDYD DG  S +L++R L H     N  IP R+ +
Sbjct: 65  EFPDLEKSVNLLVKAIASGDKIAICGDYDADGMTSTSLLLRALRHLGARVNHAIPSRMKE 124

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N  ++E+F   G  LI+TVD G ++++ +  A   G+ VI+ DHH +      A A
Sbjct: 125 GYGINQRIVEEFAESGVGLILTVDNGISAHEPIALAIELGLKVIITDHHDLPPILPNASA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP  L   S    L   GV +++ V   + + +   +       SLL L  L T+ D+
Sbjct: 185 ILNPKLLTPNSPYQGLAGVGVAYILAVTTAQKMGKLQGLT-----ESLLALFTLGTIADL 239

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGR 310
            PLIG+NR ++ +GL    +    G+++L++   I      +  +++G+ +GP INA GR
Sbjct: 240 APLIGVNRRWLKRGLRKLPKSQLVGIQSLMQIAGISEEQKQLQPDDIGFKLGPRINAIGR 299

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           IG+  +   LL +DD+      AM+ + +N+ R+ +   + E+A   V       Q+  V
Sbjct: 300 IGDPQIVIELLTTDDAGIALERAMQCEQINRTRQELCEKIEEEAIKLVEETPILWQKDRV 359

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +V+    WH G++G++A+RL E++G P F  ++EE+      G +    +     +    
Sbjct: 360 LVLVEKDWHHGVIGIVASRLVERYGVPVFIGTYEEEDASKIRGSARGIEEFHVFEALQFC 419

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + +L K GGH MA G ++   N         +F+H I+      P+ KID +++   + +
Sbjct: 420 QDLLGKFGGHKMAGGFSLPTANLLAFKQRLSQFSHKILQIEQLKPLIKIDTIIDFKQITL 479

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            L   ++S  P+G GN  PVF  PN ++   + +   HL++    +D   ++A+A+R   
Sbjct: 480 ELFQQIDSLQPWGIGNELPVFWTPNVRVVEQKTIGKNHLKLLLAQRDDTRIKALAWRWGE 539

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAK 599
                        R+ +   L  N W G+   ++ ++    P E     K
Sbjct: 540 YC-------PLPTRLDIAYKLKENTWNGNTTIEIELVGVRLPQENDSIKK 582


>gi|237714403|ref|ZP_04544884.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D1]
 gi|262408235|ref|ZP_06084782.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_22]
 gi|294806119|ref|ZP_06764971.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445567|gb|EEO51358.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D1]
 gi|262353787|gb|EEZ02880.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           2_1_22]
 gi|294446633|gb|EFG15248.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086543|emb|CBK68066.1| exonuclease RecJ [Bacteroides xylanisolvens XB1A]
          Length = 572

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V +ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|294645404|ref|ZP_06723111.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus
           SD CC 2a]
 gi|292639259|gb|EFF57570.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus
           SD CC 2a]
          Length = 583

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 15  KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 73

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 74  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 133

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 134 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 193

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 194 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 248

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 249 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 308

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 309 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 367

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 368 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 424

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ +    +    T+ V +ID  ++   ++    
Sbjct: 425 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 484

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 485 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 544

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 545 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 583


>gi|238792837|ref|ZP_04636468.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia intermedia
           ATCC 29909]
 gi|238727945|gb|EEQ19468.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia intermedia
           ATCC 29909]
          Length = 577

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+P    L   D     + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKTA---TELERGVKGLLP-WQQLDGIDAGVTLLQQALADKRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNVDYLVPNRFDDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A   GI V+V DHH        A A++NPN +        L   GV F 
Sbjct: 138 NGISSHAGVDLAHTLGIQVLVTDHHLPGETLPAAEAIINPNLVGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRVSGWFEQRALAEPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL++DD  +   
Sbjct: 258 GKCRPGVRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLTDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDALNQARREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG L  + +++   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V    P
Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576


>gi|320323164|gb|EFW79253.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329565|gb|EFW85554.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 571

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 284/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|308535303|ref|YP_003933722.1| single-stranded DNA-specific exonuclease RecJ [Geobacter
           bemidjiensis Bem]
 gi|308052648|gb|ADO00810.1| LOW QUALITY PROTEIN: single-stranded DNA-specific exonuclease RecJ
           [Geobacter bemidjiensis Bem]
          Length = 569

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/582 (32%), Positives = 281/582 (48%), Gaps = 21/582 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           I+   W       G+  AL    +   P ++AR+L NR +  +  AK +L+P +  L  +
Sbjct: 4   ITHKIWRPREADPGVVDALT---RCGFPALLARLLANRGIDGETGAKAYLSPVLSGL-EN 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           PL++    +A  R+  A   SE++ + GDYDVDG  + AL++ F     ++   YIP R+
Sbjct: 60  PLLMKGMAEAVERLALARTRSERVCVHGDYDVDGVTASALLISFFRAVGIDCFPYIPKRL 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +P  +      GA +++TVDCG TS D        GID+IV DHH        A
Sbjct: 120 TEGYGLSPQGVAAAAKGGATVLVTVDCGITSIDEGLLCRQSGIDLIVTDHHAPGERLPEA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLLDLVALATV 250
            A++NP +         L   GV F +L+ +   LR DN       DL   LDLVAL TV
Sbjct: 180 LAVINPLQPGCRFPFKSLAGVGVAFHLLIALRARLRADNCFTAGEPDLKEYLDLVALGTV 239

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
            DVVPL+G NR  V  GL         G+ AL E   ++  +    +G+ + P INA GR
Sbjct: 240 ADVVPLLGANRILVSYGLKQLSAGSRVGIAALKEVAGVTGEVGCGAVGFRLAPRINAAGR 299

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + ++ LG  LL++ D      +A  LD  N  R+ +E A LE+A  + + +    +    
Sbjct: 300 LEDAALGLELLLTGDRDRAREIAALLDDSNGERQALERATLEEA--RAMLEQGACRGRKS 357

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           IV+  D WHPG++G++A+R+ E F RP    +  E G G GSGRSI  F + + +    +
Sbjct: 358 IVLGSDLWHPGVIGIVASRIVELFHRPVILFA-FEGGTGRGSGRSISRFHLLEAIRSCGQ 416

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              L++ GGH+ AAGL++             + A   +     TP    D  L   AV+ 
Sbjct: 417 H--LLRFGGHSHAAGLSIAEE-ALDSFSLSFEEAAQALDDEALTPTLAYDLELLPGAVDE 473

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
           AL+  LE   P+G GNP P+F     +++  RV+   HL++           AIAF +  
Sbjct: 474 ALVSELERMKPFGMGNPEPLFLMKGVRVEDCRVLKGGHLKLKVVH-GGRAFDAIAFGLAD 532

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                   +   +R+ +     +N W G K  QL V D   V
Sbjct: 533 --------KGGAQRVDLVCSPGINVWNGKKSLQLTVKDLREV 566


>gi|253700410|ref|YP_003021599.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M21]
 gi|251775260|gb|ACT17841.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M21]
          Length = 569

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/582 (31%), Positives = 281/582 (48%), Gaps = 21/582 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           I+   W     +       A+T+    P ++AR+L NR +  +  AK +L+P +  L  +
Sbjct: 4   ITHKIW--RPREADPAAVDALTRS-GFPALLARLLANRGIDGEKGAKAYLSPVLSGL-EN 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P+++    +A  R+  A    E++ + GDYDVDG  + AL++ F     ++   YIP R+
Sbjct: 60  PMLMKGMAEAVERLALARTRHERVCVHGDYDVDGVTASALLIGFFRAVGIDCFPYIPKRL 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +P  +      GA +++TVDCG TS D        GID+IV DHH        A
Sbjct: 120 TEGYGLSPQGVAAAAKGGATVLVTVDCGITSLDEGLLCREAGIDLIVTDHHAPGERLPEA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATV 250
            A+++P +         L   GV F +L+ +   LR DN       DL   LDLVAL TV
Sbjct: 180 LAVIDPLQPGCPFPFKSLAGVGVAFHLLIALRARLRADNSFTACEPDLKEYLDLVALGTV 239

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
            DVVPL+G NR  V  GL         G+ AL E   ++  +    +G+ + P INA GR
Sbjct: 240 ADVVPLLGPNRILVSYGLKQLSAGSRVGIAALKEVAGVTGEVGCGAVGFRLAPRINAAGR 299

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + ++ LG  LL++ D      +A  LD  N  R+ +E A L++A  + + +    +    
Sbjct: 300 LEDAALGLELLLTGDPARAREIAALLDDSNGERQALERATLDEA--RAMLEQGACRGRKS 357

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           IV+  D WHPG++G++A+R+ E F RP    +  E G G GSGRSI  F +   +     
Sbjct: 358 IVLGSDLWHPGVIGIVASRIVELFHRPVILFA-FEGGTGRGSGRSISRFHLLDAIRTC-- 414

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              L++ GGH+ AAGL++           F++ A   +     TP    D  L   AV+ 
Sbjct: 415 GKHLLRFGGHSHAAGLSIAEEELDSFSLSFEQAAQA-LDDDALTPTLAYDLELLPGAVDE 473

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
           AL+  LE   P+G GNP P+F     +++  RV+   HL++          +AIAF +  
Sbjct: 474 ALVTELERMKPFGMGNPEPLFLMKGVRVEDCRVLKGGHLKLKVVH-GGRAFEAIAFGLAD 532

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                   +   +R+ +     +N W G +  QL V D   V
Sbjct: 533 --------KGGAQRVDLVCSPGINVWNGKRSLQLTVKDLREV 566


>gi|152984597|ref|YP_001346779.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa PA7]
 gi|150959755|gb|ABR81780.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           aeruginosa PA7]
          Length = 571

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 176/564 (31%), Positives = 280/564 (49%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++AR+   R V        L+  +  L+P    L   ++    +V+A+   ++I+I
Sbjct: 17  DLPPLLARLYAARGVRCAEE---LDKGLARLIPY-QRLKGIEEGVALLVEALEGGQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + ++ +  L     +  +  +P+R   GYG  P ++   + +   L++TV
Sbjct: 73  VGDFDADGATASSVGVLALRMLGASWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +Q A   G+ V+V DHH    E   A A++NPN+         +   GV+F
Sbjct: 133 DNGISSVDGVQAAKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GL   R
Sbjct: 193 YVMLALRARLRELGWFDRRGLKEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+AL+E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D     
Sbjct: 253 AGRARPGLRALLEVAGRPPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     + Q    + +    WH G++G+LA+RL
Sbjct: 313 DMAVQLDQLNQDRKAIEQGMQREALAQLKDLSLE-QLPFGLCLFDADWHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   DG   GS RSI GF I   +    A   G++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
            + NFG     F       +           DG L+    ++ L   L  AGP+G   P 
Sbjct: 432 PQENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   R+V   HL++  +S+     L  IAF V              +   +
Sbjct: 492 PMFHG-VFQLVQQRIVGERHLKLALKSECGSLQLDGIAFNVDREQWP----NPTVRWAEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG +  QL V+  +P
Sbjct: 547 AYRLDVNEFRGQESVQLMVVHLAP 570


>gi|281420793|ref|ZP_06251792.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella copri DSM
           18205]
 gi|281405085|gb|EFB35765.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella copri DSM
           18205]
          Length = 573

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/586 (28%), Positives = 281/586 (47%), Gaps = 22/586 (3%)

Query: 16  FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W       E    A  +  K  +  ++A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYESPTPEQQKAAEELGAKLNMSPVLAHLLIKREITTESAAKRFFRPQLSDLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDIAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  +   ++YA + GID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDFAHQTGVKLIIILDCGIKAIQEIEYAKSLGIDFIICDHHVPDDVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDPFPFKHLCGCGVGFKFMQAFAK-----NNNIPFSRLIPLLDFCAVSIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL +     + GLK++I+   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILAFHGLKLLNTNPSIGLKSIIDICGLNGRELSMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
              L   LL+  D      +A  ++  N+ R+ ++  M E+A   ++++ + ++  S IV
Sbjct: 297 NGKLSVDLLVERDYSSALRMARHINEYNEQRKDIDKQMTEEANG-IVSRLESMKHNSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFDI   +       
Sbjct: 356 LYDEGWKKGVIGIVASRLTEIYFRPTIVLT-RDGDMATGSARSVTGFDIYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT++        D FQ +    +    T P+  ID  ++   +   L
Sbjct: 413 LLLNFGGHTYAAGLTLKWDKVREFRDRFQHYVEEHISPQQTEPMLNIDAEIDFKDITKHL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G  N  P+F         + +VV     H+++     + S  L  IAF  
Sbjct: 473 QADLKRFSPFGPCNQKPIFCTNRVYDYGTSKVVGREQEHIKLELVDSKSSTVLNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                         +   +   +  N ++   + QL++ D  P EG
Sbjct: 533 S----AAARYIKSKRSFDIAFTIEENIFK-KNQVQLQIEDIRPNEG 573


>gi|196250102|ref|ZP_03148796.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           G11MC16]
 gi|196210286|gb|EDY05051.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp.
           G11MC16]
          Length = 785

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW      E       + ++  I  ++A++LV R V +   A  FL+P +     DP +L
Sbjct: 7   RWEVDCPDE--QTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDP-LGQPFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A RR+ +AI   E ++++GDYD DG  S ++M+  L     +   YIP+R  +GY
Sbjct: 64  DGMERAVRRLERAINTGELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +        G  +I+TVD G  + D +  A   G+DVIV DHH+       AYA++
Sbjct: 124 GPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEWGLDVIVTDHHEPGPVLPEAYAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P +         L   GV F V   +   +              LLDLVA+ T+ D+VP
Sbjct: 184 HPKKPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314
           L+G NR    +GL   R     GL+AL  +  I +  +  + +G+ I P +NA GR+G +
Sbjct: 233 LVGENRLLAAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL++DD  E   LA ++D LN+ R+ + + M E+A   V  Q    +   V+VV 
Sbjct: 293 DPAVALLMTDDEGEAARLAQEMDELNRERQQLVAQMAEEAAEMVRRQFPPEEHR-VLVVA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           G+ W+PG+VG++A++L E+F RP+  +S   E G   GS RSI GFD+    S +    I
Sbjct: 352 GEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDL--FASLSQCRDI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L +     A   +     TP   ID   +   + ++  
Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAA 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
              E   P+G  NP P+       ++++R V     H++  F SQ+   + AI F +   
Sbjct: 470 RSFERLAPFGVSNPRPLLLIEEVAVETMRRVGANGAHMKAVF-SQNGAAIDAIGFGLG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   + G  +   G L VN W G  + QL + D +      F  +
Sbjct: 527 --PLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLCDVAVSSCQVFDAR 573


>gi|330985063|gb|EGH83166.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 571

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 284/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRMNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|229019632|ref|ZP_04176443.1| Exonuclease RecJ [Bacillus cereus AH1273]
 gi|229025871|ref|ZP_04182267.1| Exonuclease RecJ [Bacillus cereus AH1272]
 gi|228735423|gb|EEL86022.1| Exonuclease RecJ [Bacillus cereus AH1272]
 gi|228741656|gb|EEL91845.1| Exonuclease RecJ [Bacillus cereus AH1273]
          Length = 779

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYSE--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A + GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKDLGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|206976087|ref|ZP_03236997.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           H3081.97]
 gi|217961900|ref|YP_002340470.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH187]
 gi|222097854|ref|YP_002531911.1| single-stranded-DNA-specific exonuclease [Bacillus cereus Q1]
 gi|229141148|ref|ZP_04269689.1| Exonuclease RecJ [Bacillus cereus BDRD-ST26]
 gi|206745839|gb|EDZ57236.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           H3081.97]
 gi|217063172|gb|ACJ77422.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH187]
 gi|221241912|gb|ACM14622.1| single-stranded-DNA-specific exonuclease [Bacillus cereus Q1]
 gi|228642311|gb|EEK98601.1| Exonuclease RecJ [Bacillus cereus BDRD-ST26]
          Length = 779

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M+       TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|260171916|ref|ZP_05758328.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D2]
 gi|315920228|ref|ZP_07916468.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D2]
 gi|313694103|gb|EFS30938.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D2]
          Length = 572

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSIALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V +ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVNAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 SDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572


>gi|257487143|ref|ZP_05641184.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 571

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DDS    
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDSTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|229543714|ref|ZP_04432774.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus coagulans
           36D1]
 gi|229328134|gb|EEN93809.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus coagulans
           36D1]
          Length = 787

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 185/589 (31%), Positives = 286/589 (48%), Gaps = 29/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW     +     A  I+Q+  +  +V+++LVNR ++  + A+ FL     L   DP +L
Sbjct: 7   RWRVPEMEP--KAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHE-GLAYYDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KAA RI +AI   E +++FGDYD DG  S A+MM  L+    +A  YIPDR  +GY
Sbjct: 64  HDMEKAAARIREAIKKEEPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN +   +   EG QLIITVD G  +    + A   GI +I+ DHH+       A+A+V
Sbjct: 124 GPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVARELGITLIITDHHEPGPVLPEAFAIV 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P   +       L  AGV F V   +Y  + +            L DL A+ TV D+VP
Sbjct: 184 HPKHPESTYPFRELSGAGVAFKVAHALYGKVPE-----------QLEDLAAIGTVADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L+  NR   + G+   R     GL AL    +I    I  E +G+++ P +NA GR+  +
Sbjct: 233 LLDENRLIAINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
              + LL+++D++E  MLA  +D LN+ R+ + + M  +A   V  +    + A V+VV 
Sbjct: 293 APAAELLMTEDTEEAGMLAETIDGLNKERQKIVNDMTNEAIELVEEEV--EKGARVLVVG 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+ G++G+ A+RL E+F RP+  +SF  E G   GS RSI+GF +      +    I
Sbjct: 351 KEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHM--FNELSKCRDI 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A   +P  +  PV  I   ++     +  I
Sbjct: 409 LPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAA-LPDEMFVPVTNISAEISIEEAGMEAI 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             +    P+G  NP P+      +   IR +     HL++T  S++  TL  I F +   
Sbjct: 468 REMALLSPFGTANPKPLLLLDGAECPQIRAIGADGKHLKLTL-SKNGTTLDGIGFGLGHL 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G L +N W   ++ Q+ V D        F  +
Sbjct: 527 ----APHISPSACISVVGELSINEWNNIRKPQMMVKDIKITNWQLFDFR 571


>gi|254976341|ref|ZP_05272813.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-66c26]
 gi|255093726|ref|ZP_05323204.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile CIP 107932]
 gi|255101917|ref|ZP_05330894.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-63q42]
 gi|255315478|ref|ZP_05357061.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-76w55]
 gi|255518141|ref|ZP_05385817.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-97b34]
 gi|255651257|ref|ZP_05398159.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-37x79]
 gi|260684321|ref|YP_003215606.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile CD196]
 gi|260687980|ref|YP_003219114.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile R20291]
 gi|306521099|ref|ZP_07407446.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-32g58]
 gi|260210484|emb|CBA64963.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile CD196]
 gi|260213997|emb|CBE06114.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile R20291]
          Length = 816

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/581 (30%), Positives = 302/581 (51%), Gaps = 23/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            +W+      G       ++K  I   + ++L NR +  +  ++ F+NPS+  L  DP +
Sbjct: 2   KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI  A+  +EKI I+GDYDVDG +S +++  +      N + YIP+R+ +G
Sbjct: 59  MKDMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   + G  LII+VDCG TS   +  A + GIDVI+ DHH+ +SE   A+A+
Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       LC  GV F ++  +        K      + + L++V LAT+CD+V
Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKMIQAL------TPKEEFKTSMYNYLEIVTLATICDIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PLI  NR  V  GL   +   N GL+ LI+   +    I + ++G+ IGP INA GR+G 
Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  +   +E   +A  L+  N  R+++E+ M  +AE  + +         V+V+
Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  GI+G++A++L EK+ +P+  +   E+G+  GS RSI+GF+I + +     + +
Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAGL+++  N   L +   KFA   +          ++  L  + +N+ L+
Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
           + L    P+G  NPNP F   N+ L+ ++V+     HL+++ E +  ++ + I F +   
Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKE--KSYECIGFNMSHL 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 M   G ++ V   L  N + G+++ Q  + D    
Sbjct: 527 K----SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563


>gi|261867768|ref|YP_003255690.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413100|gb|ACX82471.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 573

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/563 (30%), Positives = 283/563 (50%), Gaps = 18/563 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  +R++        L+ ++  +  +P +++  D A   +++A    +KI+I G
Sbjct: 19  DPLLDRLYRSRHIKNA---CQLDRTLAAIH-NPNLMSGLDDAVALLLEAYEKQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L     VN    +P+R   GYG + ++ ++ +    +L+ITVD 
Sbjct: 75  DFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +G++VIV DHH        A A++NPN         +L   GV F +
Sbjct: 135 GVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAHCGFPSKNLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR  V +GL  +  ++ 
Sbjct: 195 MLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++AL E      +  +A +LG+ I P +NA GR+   ++G  LL+++D +    LA+
Sbjct: 255 RFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMESARALAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A          + Q    IV+    WH G++G++A+R+K++
Sbjct: 315 ELDGLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERV 451
           F RP  A + E+DG   GS RSI G  I   +     +    ++K GGHAMAAGL++   
Sbjct: 375 FHRPVIAFAQEQDGILKGSARSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINEN 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +    ++           DG L+ + +N+   + L+SAGP+G   P P+F
Sbjct: 435 YFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                K+   R+V   HL+M  ES+     + AIAF V      +  +    K   +   
Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSI----KTAKLVYK 549

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
           L +N +RG++  QL +    P+E
Sbjct: 550 LDINEFRGNRDIQLLIDYIEPLE 572


>gi|145298070|ref|YP_001140911.1| RecJ single-stranded-DNA-specific exonuclease [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850842|gb|ABO89163.1| RecJ single-stranded-DNA-specific exonuclease [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 576

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 183/564 (32%), Positives = 281/564 (49%), Gaps = 19/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ +V  +R V        L  S   L+P P  L   ++A   +  A+   ++I+I 
Sbjct: 20  LHPLLRQVFASRGV---EDPVLLERSASQLLP-PQRLFGMEQAVPLLAAALTAQQRILIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      + +  +P+R   GYG  P ++E  +  GA+ +ITVD
Sbjct: 76  GDFDCDGATSSALCVLALRAMGGHHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   +  A   G+ V+V DHH    E   A A+VNPN+         L   GV F 
Sbjct: 136 NGISSIAGVAAAKAAGMQVLVTDHHLPGHELPAADAIVNPNQHGCDFPSKSLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LRQ            ++   LDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 196 LMAALNTHLRQLGWYERQGIRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRA 255

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL++        +TA +LG+ +GP +NA GR+ + +LG   L+SDD      
Sbjct: 256 GRCRPGIQALVDVSGRDGRRLTAADLGFALGPHLNAVGRLDDMSLGVACLLSDDLNLARQ 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA ++D LNQ R+ +E  M ++A A +   +  D +  S IV+  D WH G+VGL+A+++
Sbjct: 316 LASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRDEWHQGVVGLVASKV 375

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEK+ RP  A +   + +  GSGRSI G  +   +        G++ K GGHAMAAGLT+
Sbjct: 376 KEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTL 435

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
            + N       F+     +V   + T V   DG L    +++ L +++ ++GP+G   P 
Sbjct: 436 PKANIEAFGRAFETVIGELVTPELLTGVLLTDGELLPDELSLELAELIRASGPWGQAFPE 495

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           P+F      L   R+V   HL+M   +     + AIAF V      +    +  KR+ + 
Sbjct: 496 PLFDGEFV-LVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWPD----ASVKRVRLV 550

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN WRG++  QL V      
Sbjct: 551 YRLDVNEWRGNRSVQLLVEHLEAA 574


>gi|218708548|ref|YP_002416169.1| ssDNA exonuclease RecJ [Vibrio splendidus LGP32]
 gi|218321567|emb|CAV17519.1| Single-stranded-DNA-specific exonuclease recJ [Vibrio splendidus
           LGP32]
          Length = 578

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/568 (31%), Positives = 280/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ V+R +        L  + + L      L   D A   + +AI   ++I+I
Sbjct: 18  HLPDLLKRIYVSRGIDSADQ---LETAAKGLHSY-QKLGGIDAAVELLFKAIQQQKRIII 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIELGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +++A  +G+DV+V DHH   SE   A A+VNPN          L   GV F
Sbjct: 134 DNGVSSIDGVRFAKEKGLDVLVTDHHLPGSELPIADAMVNPNLESCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+      +      L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     +       S + +    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G   GS RSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F R    F       +       +   DG L     ++   + L S GP+G   P
Sbjct: 434 IMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAETLRSGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K +H+   L +N +RG++  QL +    
Sbjct: 549 KTVHLAFKLDINEFRGNQSLQLMIDHIE 576


>gi|154492880|ref|ZP_02032506.1| hypothetical protein PARMER_02519 [Parabacteroides merdae ATCC
           43184]
 gi|154087185|gb|EDN86230.1| hypothetical protein PARMER_02519 [Parabacteroides merdae ATCC
           43184]
          Length = 574

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/581 (28%), Positives = 283/581 (48%), Gaps = 21/581 (3%)

Query: 17  RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           +W      +E +++   +  +  +  +V  +LV R ++  +  K F  PS+  L  DP +
Sbjct: 4   KWNFQTPTEEELHKRDRLASQLGLSPVVCLLLVQRGLTTVEEVKKFFKPSLNDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA +R+ +A+ N EKI+I+GDYDVDG  +V+L+ ++L   S   + YIPDR  +G
Sbjct: 63  MPDMEKAVKRLNKALGNKEKILIYGDYDVDGTTAVSLVYKYLRPYSSALDYYIPDRYDEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +      G  L+I++DCG  + + ++YA   GID I+ DHH        A A+
Sbjct: 123 YGISYKGINYARENGITLVISLDCGIKAIEKIEYAKQLGIDFIICDHHMPDDTLPDAVAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  R+D +    HL   GV F  +    +     N  P   DL  LL+L A++   D+V
Sbjct: 183 LDAKRVDSVYPYEHLSGCGVGFKFMQAFAK----SNNFP-FADLEKLLELTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR     GL       + GLK +I+   +S   IT  ++ + IGP INA GR+  
Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLSGKEITISDIVFKIGPRINASGRMMN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL++ D       +  ++  N+ RR ++  + ++A A +  +  +++    I+V
Sbjct: 298 GKEAVELLLAKDVDVAREKSESINQYNEERRELDKKITDEANAII-DEFQNMEDRKAIIV 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK+ RP+  ++   +    GS RS+ GFDI K +       +
Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F K A + +     TP   ID VL+   +N   +
Sbjct: 414 LENFGGHTYAAGLSLKEENLDAFTQRFLKLAADEIIPEQMTPQIDIDAVLDLQDINAKFM 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF-ESQDSETLQAIAFRVY 549
             L+   P+G  N  PVF     K   + ++V     H+++   + + +  +  IAF ++
Sbjct: 474 SELKKMNPFGPDNQKPVFCSLGVKDYGTSKLVGKDLEHIKLELIDDKSNTPIHGIAFGMH 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                        K  ++   +  N + G+   QL V D  
Sbjct: 534 QHN----THIKNMKPFNICYTIEENTYNGNTSLQLMVKDIK 570


>gi|255656731|ref|ZP_05402140.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile QCD-23m63]
          Length = 816

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/579 (30%), Positives = 297/579 (51%), Gaps = 19/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            +W+      G       ++K  I   + ++L NR +  +  ++ F+NPS+  L  DP +
Sbjct: 2   KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI  A+  +EKI I+GDYDVDG +S +++  +      + + YIP+R+ +G
Sbjct: 59  MKDMQKAVDRIKSAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYHVDYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   + G  LII+VDCG TS   +  A + GIDVI+ DHH+ ++E   A+A+
Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQNEIPVAFAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       LC  GV F ++  +        K      +   L++V LAT+CD+V
Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKIIQAL------TPKEEFKTSMYDYLEIVTLATICDIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PLI  NR  V  GL   +   N GL+ LI+   +    I + ++G+ IGP INA GR+G 
Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  +   +E   +A  L+  N  R+++E+ M  +AE  + +         V+V+
Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  GI+G++A++L EK+ +P+  +S  E+G+  GS RSI+GF+I + +     + +
Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLS-IENGEATGSARSIKGFNIFEALVKC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAGL+++  N   L +   KFA   +          ++  L  + +N+ L+
Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENINVEFELQENVINLNLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           + L    P+G  NPNP F   N+ L+ ++V+      +    +  ++ + I F +     
Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLNIEKEKSYECIGFNMSHLK- 527

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               M   G ++ V   L  N + G+++ Q  + D    
Sbjct: 528 ---SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563


>gi|255307786|ref|ZP_05351957.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile ATCC 43255]
          Length = 816

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/581 (30%), Positives = 301/581 (51%), Gaps = 23/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            +W+      G       ++K  I   + ++L NR +  +  ++ F+NPS+  L  DP +
Sbjct: 2   KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI  A+  +EKI I+GDYDVDG +S +++  +      N + YIP+R+ +G
Sbjct: 59  MKDMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   +    LII+VDCG TS   +  A + GIDVI+ DHH+ +SE   A+A+
Sbjct: 119 YGINEDAIKLISSRECDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       LC  GV F ++  +        K      + + L++V LAT+CD+V
Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKMIQAL------TPKEEFKTSMYNYLEIVTLATICDIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PLI  NR  V  GL   +   N GL+ LI+   +    I + ++G+ IGP INA GR+G 
Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  +   +E   +A  L+  N  R+++E+ M  +AE  + +         V+V+
Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  GI+G++A++L EK+ +P+  +   E+G+  GS RSI+GF+I + +     + +
Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAGL+++  N   L +   KFA   +          ++  L  + +N+ L+
Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
           + L    P+G  NPNP F   N+ L+ ++V+     HL+++ E +  ++ + I F +   
Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKE--KSYECIGFNMSHL 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 M   G ++ V   L  N + G+++ Q  + D    
Sbjct: 527 K----SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563


>gi|261345594|ref|ZP_05973238.1| single-stranded-DNA-specific exonuclease RecJ [Providencia
           rustigianii DSM 4541]
 gi|282566074|gb|EFB71609.1| single-stranded-DNA-specific exonuclease RecJ [Providencia
           rustigianii DSM 4541]
          Length = 577

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/565 (31%), Positives = 279/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP+++ R+  +R ++    +  L      L+ +   L+  D +   + +A+   +KI I
Sbjct: 21  DIPELLQRIYASRGITD---RTQLERKASHLL-NYQSLSGIDNSLDILYRALTEHQKITI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL MR L      N N  +P+R  +GYG  P ++++   +G  LIITV
Sbjct: 77  VGDFDADGATSTALAMRALKAMGYANLNYIVPNRFENGYGLTPLVVDEAYKQGTDLIITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S++ ++ A   G+ VI+ DHH        A A++NPN  +       L   GV F
Sbjct: 137 DNGISSHEGVETAHQYGMKVIITDHHLPGETLPNADAIINPNLHECQFPSKSLAGVGVTF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ            +L   LDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMSALRAHLRQVKWFEQQGISEPNLAEYLDLVALGTVADVVPLDMNNRILVHQGLNRVR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+KALIE      S + A + G+ +GP +NA GR+ + ++   LL++DD     
Sbjct: 257 AGRCCAGIKALIEVSKRDSSRLVANDFGFALGPRLNAAGRLDDMSVSIELLLTDDMAYAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA +LD LNQ RR +E+ M ++A          D Q  + + +    WH G+VG+LA+R
Sbjct: 317 ELANELDGLNQTRRDIEAGMQQEALVLFNKINYSDSQLPNGLALYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRS++G  +   +      + G++ K GGHAMAAGL+
Sbjct: 377 IKEQFHRPVIAFAPAGDGILKGSGRSVQGVHMRDALERLNTLQPGLMQKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F+     ++     + V   DG L  +  ++   ++L  +GP+G   P
Sbjct: 437 LEERKFETFKYHFESLMGELIQPEQLSGVIWSDGELLRNQFSLETAELLRESGPWGQAFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + +L   ++V   HL++  E       L  I F +      +    +  K+  
Sbjct: 497 EPIFDG-HFQLLQQKIVGEKHLKLMLEPVNGGPMLDGIMFNIDVRRWPD----NSVKKAK 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG K  QL +    P
Sbjct: 552 IAFKLDVNEFRGQKNVQLMIEHIWP 576


>gi|331016316|gb|EGH96372.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 569

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 282/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           +L  LLDLVAL +V DVVPL   NR  V +GLM  R  
Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252

Query: 274 QGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        +   +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVARREPARSTSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTRAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RLKE
Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPMESMPFGLCLFDAE-WHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L +AGP+G   P P+
Sbjct: 432 DNFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVRLDGIAFSVDR----DIWPNPNIRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V+  +P
Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568


>gi|296452440|ref|ZP_06894141.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           difficile NAP08]
 gi|296877789|ref|ZP_06901815.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           difficile NAP07]
 gi|296258770|gb|EFH05664.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           difficile NAP08]
 gi|296431240|gb|EFH17061.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           difficile NAP07]
          Length = 816

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/579 (30%), Positives = 296/579 (51%), Gaps = 19/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            +W+      G       ++K  I   + ++L NR +  +  ++ F+NPS+  L  DP +
Sbjct: 2   KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI  A+  +EKI I+GDYDVDG +S +++  +      + + YIP+R+ +G
Sbjct: 59  MKDMQKAVDRIKSAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYHVDYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   + G  LII+VDCG TS   +  A + GIDVI+ DHH+ ++E   A+A+
Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQNEIPVAFAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       LC  GV F ++  +        K      +   L++V LAT+CD+V
Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKIIQAL------TPKEEFKTSMYDYLEIVTLATICDIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PLI  NR  V  GL   +   N GL+ LI+   +    I + ++G+ IGP INA GR+G 
Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  +   +E   +A  L   N  R+++E+ M  +AE  + +         V+V+
Sbjct: 293 SYLGVELFTTQSQEEAVEIASILKEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  GI+G++A++L EK+ +P+  +S  E+G+  GS RSI+GF+I + +     + +
Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLS-IENGEATGSARSIKGFNIFEALVKC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAGL+++  N   L +   KFA   +          ++  L  + +N+ L+
Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENINVEFELQENVINLNLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           + L    P+G  NPNP F   N+ L+ ++V+      +    +  ++ + I F +     
Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLNIEKEKSYECIGFNMSHLK- 527

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               M   G ++ V   L  N + G+++ Q  + D    
Sbjct: 528 ---SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563


>gi|238783656|ref|ZP_04627676.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia bercovieri
           ATCC 43970]
 gi|238715369|gb|EEQ07361.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia bercovieri
           ATCC 43970]
          Length = 577

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   D     + QA+    +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALAERRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVELAHAKGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRDSGWFEQRALAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F +    F       + A     V   DG L    ++I   ++L   GP+G   P 
Sbjct: 438 EQDKFDQFRQCFADLVGEWMDASQLEGVIWSDGELKGGDLSIETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PIFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576


>gi|295689095|ref|YP_003592788.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter segnis
           ATCC 21756]
 gi|295430998|gb|ADG10170.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter segnis
           ATCC 21756]
          Length = 611

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 226/593 (38%), Positives = 335/593 (56%), Gaps = 9/593 (1%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           +   AFLGVE S+SG  W        +     I Q+H + + +AR L  R VS++ ++ +
Sbjct: 16  IAPSAFLGVEHSLSGRAWRERAADPLV--VRDIQQRHGLIEPLARALAARGVSLEQSEHY 73

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L P++R L PDP   TD D+AA  ++ A+      M+F DYDVDGA S A ++R+  +  
Sbjct: 74  LRPTLRALFPDPSSFTDMDRAAEILIDALAQGRPTMVFADYDVDGATSAAQLVRWFRYMG 133

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           V   +YIPDR+ +GYGP+P+   K    GA+L++T+DCG+ +YDA+  A   G++V+VID
Sbjct: 134 VELPIYIPDRLTEGYGPSPAAFRKIRESGAELVVTLDCGAAAYDAIASAAEIGLEVVVID 193

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFD 237
           HH ++ +   A A+VNPNR    SGQG L AAGV F++L  + R  R+           D
Sbjct: 194 HHLMREDPPAAAAVVNPNRPGCQSGQGVLAAAGVTFVLLAALNREARKRGLFTEDRPQPD 253

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
               LDLVAL  VCDV  L+G NRA    GL       NPGLKAL E    S P +  + 
Sbjct: 254 PRQWLDLVALGEVCDVTQLVGFNRALTALGLRTMGAWANPGLKALFEVGKGSGPPSVFHA 313

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+++GP INAGGRIG S+LG+RLL +DD  E   LA +LD LN  R+ +E+A++E+A A 
Sbjct: 314 GFILGPRINAGGRIGRSDLGARLLSTDDPLEARALAEELDGLNTERKAVEAAVVEEAAAM 373

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSI 416
           +  + +    A VIVV G+ WHPG++G++A RL+E++ +P   I        G GSGRS 
Sbjct: 374 L-ERGNLNPDAPVIVVAGEDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQ 432

Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
            G ++G+ +  A E G+L+ GGGHAMAAGL++          F ++     + A+     
Sbjct: 433 PGVNLGRAIQGAFEAGLLMAGGGHAMAAGLSIRPEAIPEFRAFLEQHLAGEMEAVGAEA- 491

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536
            +ID +L   A + AL D  +   P+G GNP P+FA    +   +  +   H+++     
Sbjct: 492 VEIDVLLQPRAASRALHDDFQRLAPFGPGNPEPMFAMTQVRPDRVTALKGGHVRLDLVGP 551

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + ++A+++R   TPLG  L+   G  + V G L  + + G    Q  + DA
Sbjct: 552 TGDRIKAVSWRSAETPLGRRLLAGGGA-LDVAGRLKPDDYMGRNGVQFEIEDA 603


>gi|293390161|ref|ZP_06634495.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950695|gb|EFE00814.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 573

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/563 (30%), Positives = 283/563 (50%), Gaps = 18/563 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  +R++        L+ ++  +  +P +++  D A   +++A    +KI+I G
Sbjct: 19  DPLLDRLYRSRHIKNA---CQLDRTLAAIH-NPNLMSGLDDAVALLLEAYEKQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L     VN    +P+R   GYG + ++ ++ +    +L+ITVD 
Sbjct: 75  DFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +G++VIV DHH        A A++NPN         +L   GV F +
Sbjct: 135 GVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAYCGFPSKNLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR  V +GL  +  ++ 
Sbjct: 195 MLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++AL E      +  +A +LG+ I P +NA GR+   ++G  LL+++D +    LA+
Sbjct: 255 RFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMENARALAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A          + Q    IV+    WH G++G++A+R+K++
Sbjct: 315 ELDGLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERV 451
           F RP  A + E+DG   GS RSI G  I   +     +    ++K GGHAMAAGL++   
Sbjct: 375 FHRPVIAFAQEQDGILKGSARSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINEN 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +    ++           DG L+ + +N+   + L+SAGP+G   P P+F
Sbjct: 435 YFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                K+   R+V   HL+M  ES+     + AIAF V      +  +    K   +   
Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSI----KTAKLVYK 549

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
           L +N +RG++  QL +    P+E
Sbjct: 550 LDINEFRGNRDIQLLIDYIEPLE 572


>gi|42783539|ref|NP_980786.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC
           10987]
 gi|42739468|gb|AAS43394.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC
           10987]
          Length = 779

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNS--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M+       TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|329926795|ref|ZP_08281203.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           HGF5]
 gi|328938995|gb|EGG35363.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           HGF5]
          Length = 800

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/581 (29%), Positives = 291/581 (50%), Gaps = 26/581 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W        I     +    ++P IVA ++ +R + S +  ++FL  +   L  DP
Sbjct: 4   SKYEWRIREAASTI--TERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTF-ELTHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++    +A  RI +A+ + E I+I+GDYD DG +S +LM+  +     + ++YIP R  
Sbjct: 61  YLMLGMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRDLGASYDIYIPHRSN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++    +G  L+ITVD G ++ + + YA + GIDVIV DHH+       AY
Sbjct: 121 EGYGLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPELLPEAY 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           AL+NP           L   GV + +   +           +       L +V++ T+ D
Sbjct: 181 ALINPKIPTCPYPFKGLAGVGVAYKLAQAL-----------VGDPPEEWLQIVSIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           ++PL G NR  V  G+   R+    G+++L+E   I    +TA N+ + + P INA GR+
Sbjct: 230 LMPLTGENRVLVKHGIESMRKTRYEGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL ++  +E E LA +LD LN++R+ +   ++++A   V  +    +   VI
Sbjct: 290 DHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWGGQEIPPVI 349

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G+ W+ G+VG++A+++ E+F RP   +    E G   GS RSI GFDI   +     
Sbjct: 350 VLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLSC-- 407

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + ++   GGH  AAG+++ R           ++A + + A     V + D   + S V++
Sbjct: 408 KDVMDHFGGHPSAAGMSLHRDRLEVFEQGLHRYAEDALEAEHLIAVCEADLEASLSEVSV 467

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
            +++ +E  GP+G  N  P   F N  ++ +R +     HL++  + Q+ E + AI+F  
Sbjct: 468 PILEQMEQLGPFGMANAVPKIVFRNVVVKDVRKIGKEGKHLKLRLQ-QEREVIDAISFGW 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               L + L    G  + V G L VN W GS++ QL + D 
Sbjct: 527 G--HLADIL--PVGSVVDVLGELSVNEWNGSRKVQLMIQDI 563


>gi|154496366|ref|ZP_02035062.1| hypothetical protein BACCAP_00654 [Bacteroides capillosus ATCC
           29799]
 gi|150274449|gb|EDN01526.1| hypothetical protein BACCAP_00654 [Bacteroides capillosus ATCC
           29799]
          Length = 689

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/580 (29%), Positives = 277/580 (47%), Gaps = 23/580 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W           A A  +   +P + A VL  R +   + AKDFL      L+ DP +
Sbjct: 4   RQWNLRAPSP---AAQAAMEADGVPPLAASVLCARGLDTVEKAKDFLRSD-EDLLWDPFL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D+A  RI  A+  +E I ++GDYDVDG  S  L+  +L         YIPDR+ +G
Sbjct: 60  MKDMDRAVSRIAAALDQNEHIAVYGDYDVDGITSTCLLTDYLRSRGAKVTPYIPDRMEEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + S +     +G  LIITVDCG T+    ++A + GIDV++ DHH+ K     A A+
Sbjct: 120 YGLSCSAVSALHAKGVSLIITVDCGITAVAEAEFAASLGIDVVITDHHECKDRIPTAAAV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P+R D      HL   GV   +++ +     +         L    DL A+ TV DV+
Sbjct: 180 VDPHRRDCGYPFKHLAGVGVALKLVLALGDKTEES------ALLRRYADLAAVGTVADVM 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
            ++G NR  +  GL   +    PGL+AL+    ++        +GY + P INA GR+G 
Sbjct: 234 QVVGENRTIIRMGLAALKNTVRPGLRALLHEAGLTERPLTSVSIGYTLAPRINASGRMGC 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L + LL++ D    E LA +L  LN+ R+ +E  + E  E   +      +    +V+
Sbjct: 294 AGLAAELLLTSDPARGEALARELCALNRERQAVELDIYE--ECVAMADAMRPEDRPALVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G+VG++A+RL EK+  P+F I   +DGKG GS RS  GF++   +       +
Sbjct: 352 AREGWHQGVVGIVASRLSEKYSCPTFMI-CLQDGKGKGSCRSFGGFNLFAALEQC--RDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH +AAG T+   +     +   +   +           ++D   + + +    +
Sbjct: 409 LEGFGGHELAAGFTILEEHIPAFRERMLELVRSSTGGAAMEAALEVDAEADPALLTQEGV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTP 552
             L+   PYG GNP PVF+     + +   V    HL++   ++   +  AI F V    
Sbjct: 469 LSLDLLEPYGTGNPKPVFSMSGCTVTNASEVGGGRHLKLKV-TKGGRSFDAIFFSVSLAE 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            G     + G R+ +     +N +RG +  QL+++D  P 
Sbjct: 528 AG----LAPGDRVDLAFSPQINEFRGWRSVQLQLIDLRPA 563


>gi|318607023|emb|CBY28521.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 577

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   + +   + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIEASVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A   GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCNFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRDSGWFEQRTLAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMFHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVTGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG LN + +++   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576


>gi|238752992|ref|ZP_04614451.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia rohdei ATCC
           43380]
 gi|238708780|gb|EEQ01039.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia rohdei ATCC
           43380]
          Length = 577

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 277/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   +     + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIEAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFDDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN +        L   GV F 
Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGDILPAAEAIINPNLVGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRESGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDSLNQARREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG L  + +++   ++L   GP+G   P 
Sbjct: 438 EQEKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMLEPMNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V    P
Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576


>gi|228929454|ref|ZP_04092475.1| Exonuclease RecJ [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935729|ref|ZP_04098542.1| Exonuclease RecJ [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823967|gb|EEM69786.1| Exonuclease RecJ [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228830242|gb|EEM75858.1| Exonuclease RecJ [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 779

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|238796544|ref|ZP_04640051.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia mollaretii
           ATCC 43969]
 gi|238719522|gb|EEQ11331.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia mollaretii
           ATCC 43969]
          Length = 577

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIDVGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRESGWFEQRALAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG L  + ++I   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQCFADLVGEWMDASQLEGVIWSDGELQGNDLSIETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576


>gi|126700361|ref|YP_001089258.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           difficile 630]
 gi|115251798|emb|CAJ69633.1| Single-stranded-DNA-specific exonuclease [Clostridium difficile]
          Length = 816

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/581 (30%), Positives = 302/581 (51%), Gaps = 23/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            +W+      G       ++K  I   + ++L NR +  +  ++ F+NPS+  L  DP +
Sbjct: 2   KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI  A+  +EKI I+GDYDVDG +S +++  +      N + YIP+R+ +G
Sbjct: 59  MKDMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   + G  LII+VDCG TS   +  A + GIDVI+ DHH+ +SE   A+A+
Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       LC  GV F ++  +        K      + + L++V LAT+CD+V
Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKMIQAL------TPKEEFKTSMYNYLEIVTLATICDIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PLI  NR  V  GL   +   N GL+ LI+   +    I + ++G+ IGP INA GR+G 
Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  +   +E   +A  L+  N  R+++E+ M  +AE  + +         V+V+
Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  GI+G++A++L EK+ +P+  +   E+G+  GS RSI+GF+I + +     + +
Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAGL+++  N   L +   KFA   +          ++  L  + +N+ L+
Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
           + L    P+G  NPNP F   N+ L+ ++V+     HL+++ E +  ++ + I F +   
Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKE--KSYECIGFNMSHL 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 M   G ++ V   L  N + G+++ Q  + D    
Sbjct: 527 K----SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563


>gi|229180685|ref|ZP_04308025.1| Exonuclease RecJ [Bacillus cereus 172560W]
 gi|228602830|gb|EEK60311.1| Exonuclease RecJ [Bacillus cereus 172560W]
          Length = 779

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLHLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|254508837|ref|ZP_05120947.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus 16]
 gi|219548223|gb|EED25238.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           parahaemolyticus 16]
          Length = 578

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/567 (31%), Positives = 280/567 (49%), Gaps = 24/567 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ RV ++R ++       L  + R L      L   + A   +  AI   ++I++ 
Sbjct: 19  IAPLLKRVYISRGITSPEQ---LETTARALHSY-QKLHGIEAAVELLFNAIAEQKRIIVV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ I  GA++I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S D ++YA  QG+ V+V DHH    E     A+VNPN  +       L   GV F 
Sbjct: 135 NGVSSIDGVRYAKEQGLKVLVTDHHLPGHELPNVDAMVNPNLQECAFPSKALAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +R++            L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LMMALCVHMRKNGWFAQQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254

Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL++++      
Sbjct: 255 GKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMANNIHAARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LNQ R+ +E  M ++A A     Q  D      +V+    WH G++G+LA+R+
Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAFCERLQFGDSDMPHGLVLFQRDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEKF RP  A +   +G   GS RSI G  +  ++        G++VK GGHAMAAGLT+
Sbjct: 375 KEKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDVLDRIDTQNPGLIVKFGGHAMAAGLTI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF R    F +     +       V   DG L     ++   +ML + GP+G   P 
Sbjct: 435 MESNFERFAKLFDEAVKQDLDEAALKGVILSDGELRPEEFSMHTAEMLRAGGPWGQAFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRGK 563
           P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  K
Sbjct: 495 PLFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASVK 549

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +H+   L +N +RG++  QL +    
Sbjct: 550 TVHLAYKLDINEFRGNQSLQLMIDHLE 576


>gi|255690493|ref|ZP_05414168.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           finegoldii DSM 17565]
 gi|260623945|gb|EEX46816.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           finegoldii DSM 17565]
          Length = 572

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    AK F  P +  L  DP +
Sbjct: 4   KWNYRPITPEQTETSQILAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDEVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  RLD+     HL   GV F  +         +        L+ LLD+VA++   D+V
Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAFHGLKQLNSNPSTGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A   ++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVI 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ + +       +
Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYRAIEHC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+++    +    T+ V  ID  ++   ++    
Sbjct: 414 LENFGGHTYAAGLSMKVENVEEFTRRFEEYVSQHILPEQTSAVIDIDAEIDFRDISSKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKRFNPFGPDNMKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                        +   +   +  N  +     QL++ D  P+E
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEIQLQIEDIKPIE 572


>gi|229076040|ref|ZP_04209011.1| Exonuclease RecJ [Bacillus cereus Rock4-18]
 gi|229117908|ref|ZP_04247270.1| Exonuclease RecJ [Bacillus cereus Rock1-3]
 gi|228665565|gb|EEL21045.1| Exonuclease RecJ [Bacillus cereus Rock1-3]
 gi|228707074|gb|EEL59276.1| Exonuclease RecJ [Bacillus cereus Rock4-18]
          Length = 773

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E   R   + +K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNE--ERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  N +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|77457262|ref|YP_346767.1| exonuclease RecJ [Pseudomonas fluorescens Pf0-1]
 gi|77381265|gb|ABA72778.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens
           Pf0-1]
          Length = 569

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/561 (31%), Positives = 282/561 (50%), Gaps = 18/561 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V  +     L+ S+  L+P    L   D A   +V A+   ++I+I 
Sbjct: 18  LPPLLTRLYAARGVQSE---AELDKSLARLIP-FQQLKGIDAAVDLLVTALEQRQRILIV 73

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITVD
Sbjct: 74  GDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVAMTREPQLLITVD 133

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +  A   G+ V++ DHH    E   A ALVNPN+         L   GV+F 
Sbjct: 134 NGISSVEGVAAAKRHGLKVLITDHHLPGDELPQADALVNPNQPGCEFPSKALAGVGVIFY 193

Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
           VL+ +   LR           ++  LLDLVAL +V DVVPL   NR  V +GL   R  +
Sbjct: 194 VLMALRARLRSLGWYENKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253

Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
             PG+KA++E      S IT+ +LG+++GP +NA GR+ + +LG   L++ D+     +A
Sbjct: 254 ARPGIKAILEVAKREASRITSTDLGFIVGPRLNAAGRLDDMSLGIECLLTHDAALAREMA 313

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +LD +NQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+R+KE+
Sbjct: 314 AQLDGMNQDRKSIEQGMQREALAQLKDLPVE-SMPFGLCLFDPEWHQGVIGILASRMKER 372

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVERV 451
           + RP+ A +   DG   GSGRS++GF I   +S   A    ++ K GGHAMAAGLT+ + 
Sbjct: 373 YFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPDLISKYGGHAMAAGLTLPQE 432

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           NF    + F       +     T     DG L     ++ L   L  AGP+G   P P+F
Sbjct: 433 NFSLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                +L   RVV   HL++  +++  S  L  IAF +      +       K + +   
Sbjct: 493 HG-VFQLVEQRVVGERHLKVVLKTECGSVKLDGIAFGIDR----DIWPNPTIKWVELAYK 547

Query: 571 LCVNYWRGSKRCQLRVLDASP 591
           L +N +RG++  QL +    P
Sbjct: 548 LDLNEFRGNETVQLMIAHIEP 568


>gi|257869427|ref|ZP_05649080.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           gallinarum EG2]
 gi|257803591|gb|EEV32413.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           gallinarum EG2]
          Length = 744

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/572 (30%), Positives = 278/572 (48%), Gaps = 29/572 (5%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + Q   +  ++ ++L  RN+ +    + FL P ++ L  DP +  D +KA  RI  AI N
Sbjct: 1   MIQARGLSPLIGQLLWQRNIRTAADLQSFLEPDLQGLH-DPFLFYDMEKAVDRIQTAIMN 59

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            E+I+I+GDYD DG  S  ++   L     +   Y+P+R  DGYGPN S+ +  I  G Q
Sbjct: 60  EERILIYGDYDADGITSTTVLKEALELLGADVEFYLPNRFTDGYGPNLSVYQDKIAAGVQ 119

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           LIITVD G + ++AL YA    +DVIV DHH++  E   AYA+++P           L  
Sbjct: 120 LIITVDNGVSGHEALAYAKEAQVDVIVTDHHELPPELPDAYAIIHPRHPLGNYPFSDLAG 179

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
            GV F V   +   +            + LLDLVA+ T+ D+V L G NR  V  GL + 
Sbjct: 180 VGVAFKVATALLEEVP-----------VELLDLVAIGTIADMVSLTGENRILVTNGLKMI 228

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           ++    GL ALIE        I   ++G+ IGP +NA GR+ ++N    L+ + D +E +
Sbjct: 229 QQTERAGLSALIEVSGLKKRAINETDIGFAIGPRLNAIGRLEDANPAVTLMSTFDPEEAQ 288

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +LA +LD +N  R+     +L++A+  +           V ++ GD WH G++G++A RL
Sbjct: 289 LLANQLDTINLQRKQYVETILKEAQNMLSDSNQ------VHLIVGDDWHEGVLGIVAGRL 342

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
            ++ GRP   ++ + +G   GSGRS+   ++      +    +    GGH  A GL+V  
Sbjct: 343 MQQTGRPVLVLTKKSNGIAKGSGRSVAALNL--FDMLSGMREMFTSFGGHHAAVGLSVPI 400

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +   L +   ++  +    L +     ID  L+ + +    I+ L+   P+G  NP P 
Sbjct: 401 DHLSMLQERMNQYVVDNRIDLSSGIPLPIDEELSLAEITTNFIESLKILAPFGTDNPIPK 460

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F   N    + R +     HL+++    ++  L  I F       G  L++   + + V 
Sbjct: 461 FLITNISADNGRQIGTENQHLKVSLTDGENGQLDVIGFG-----FGSQLVEFESEGLAVV 515

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           G L VN W G K+ QL + D        F  +
Sbjct: 516 GQLSVNEWNGKKKPQLMLEDFEVNGIQLFDLR 547


>gi|330872798|gb|EGH06947.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 569

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/562 (31%), Positives = 284/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALRREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           +L  LLDLVAL +V DVVPL   NR  V +GLM  R  
Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIACLLCDDPTLAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RLKE
Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L +AGP+G   P P+
Sbjct: 432 ENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFSVDR----DIWPNPNIRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V+  +P
Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568


>gi|257875789|ref|ZP_05655442.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus EC20]
 gi|257809955|gb|EEV38775.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           casseliflavus EC20]
          Length = 758

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/584 (30%), Positives = 283/584 (48%), Gaps = 29/584 (4%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCD 79
               E       + Q+  IP+ +  +L  RN+ + +    FL+  ++ L  DP +  D  
Sbjct: 3   PQESETSTVFKELIQERKIPERIGALLWQRNIRTAEALDAFLSTDLQYLH-DPFLFHDMA 61

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           KA  RI +AI N E+I+I+GDYD DG  S  ++   L      A  Y+P+R  DGYGPN 
Sbjct: 62  KAVERIHEAILNGERILIYGDYDADGITSTTVLKETLELLGAEAEYYLPNRFTDGYGPNL 121

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
           ++ +  I  G QLIITVD G + ++A+ YA  QG+DVIV DHH++ +E   A+A+V+P  
Sbjct: 122 TVYQDKIAAGTQLIITVDNGVSGHEAIAYAQGQGVDVIVTDHHELPAELPEAFAIVHPRH 181

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
                  G L   GV F V   +   +            + LLDLVA+ T+ D+V L   
Sbjct: 182 PQGNYPFGDLAGVGVAFKVACALLEEVP-----------VELLDLVAIGTIADMVSLTDE 230

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGS 318
           NR  V  GL + ++    GL  L+         +   ++G+ +GP +NA GR+ + N   
Sbjct: 231 NRLLVSNGLKMIQQSDRIGLNELLSVSGLKKQTVNETDIGFAVGPRLNAIGRLEDPNPAV 290

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
           RLL + D +E   LA  LD +NQ R+     ++++A+ K+           V +V GD W
Sbjct: 291 RLLTTFDEEEAVSLAKTLDTINQQRKTFVEEIMKEAQEKI------DPANHVHLVVGDHW 344

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H G++G++A R+ +  G+P   ++ +E+G   GSGRSI   ++      +  + +    G
Sbjct: 345 HEGVLGIVAGRIMQSTGQPVIVLTKKENGLAKGSGRSIAALNL--FEMLSTMKDMFTSFG 402

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH  A GL++   +   L     ++       L       ID  L  + V+I+ I+ L+ 
Sbjct: 403 GHHAAVGLSIPIDHLDMLQAQMNRYVEENAIDLSQGIPLAIDEELPLTEVSISFIESLKV 462

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G  NP P F F N   Q+ R +     HL++    + +  L  I F       G+ 
Sbjct: 463 LAPFGTDNPLPKFLFSNLMTQNARQIGSENQHLKLVMSDESNTQLDVIGFG-----FGKD 517

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           L+     R+ + G L +N W G+K+ QL + D +      F  +
Sbjct: 518 LVAFENDRLSIVGQLSINEWNGNKKPQLMLDDFAVEGIQLFDYR 561


>gi|238759280|ref|ZP_04620446.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia aldovae
           ATCC 35236]
 gi|238702441|gb|EEP94992.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia aldovae
           ATCC 35236]
          Length = 577

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/565 (31%), Positives = 275/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I
Sbjct: 21  HLPPLLRRLYASRGVKSPEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALADRRRIVI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TV
Sbjct: 77  VGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   GI V+V DHH        A A++NPN          L   GV F
Sbjct: 137 DNGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMLALRARLRDCGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +  
Sbjct: 257 AGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R
Sbjct: 317 ALAIDLDSLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E+  F      F       + A     V   DG L  + +++   ++L   GP+G   P
Sbjct: 437 LEQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + 
Sbjct: 497 EPTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVK 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL V    P
Sbjct: 552 LAYKLDINEYRGNRSVQLLVQHLWP 576


>gi|229198536|ref|ZP_04325240.1| Exonuclease RecJ [Bacillus cereus m1293]
 gi|228585039|gb|EEK43153.1| Exonuclease RecJ [Bacillus cereus m1293]
          Length = 779

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|255658297|ref|ZP_05403706.1| single-stranded-DNA-specific exonuclease RecJ [Mitsuokella
           multacida DSM 20544]
 gi|260849614|gb|EEX69621.1| single-stranded-DNA-specific exonuclease RecJ [Mitsuokella
           multacida DSM 20544]
          Length = 668

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 186/591 (31%), Positives = 288/591 (48%), Gaps = 22/591 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W        +    A  Q+      VA +L +R + + D A+ FL+P  RL   DP  
Sbjct: 3   KKWKLYEPVPELA---AFAQEIGRDTTVAALLWHRGIRTRDAAELFLHPE-RLPFADPFA 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA  RI +A+   E I ++GDYDVDG  + +L+ R L       + YIPDR+ +G
Sbjct: 59  MRDMDKAVARIQKALAQGEHITVYGDYDVDGMTATSLLTRTLRKFGAKVDFYIPDRMTEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI-DVIVIDHHQVKSEEIPAYA 193
           YG N   +E+     + L++TVDCG  S   +      G  D+I+ DHH   SE  PA A
Sbjct: 119 YGLNRRALEEIAE-QSDLLVTVDCGIASVADVAAIQGAGKLDIIITDHHLPGSELPPACA 177

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP+R D       L   GV F +   +    R              L+LVAL TV D+
Sbjct: 178 VLNPHRADCPYPDKDLAGVGVAFKLCQALAAA-RSGKLWDGQSAFTDDLELVALGTVADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VPL G NR  V +G+        PG+ AL+E        ITA +LG+++ P +NA GRI 
Sbjct: 237 VPLRGENRRIVKQGMARMEATALPGVAALVEVAGLKDKKITAGHLGFLLAPRLNAAGRIE 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL ++D  + + LA++LD LN  RR +ES + + AE ++  +  D+ +   IV
Sbjct: 297 SARTGVALLTAEDRAQADKLALELDALNTERREIESTICQTAEQEL--ESLDMAETKAIV 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V G  W+PG++G+ A+RL +KF +P+  +S +EDG   GS RSIEG ++ + +S   E  
Sbjct: 355 VAGKGWNPGVIGIAASRLVDKFYKPTIVLSVQEDGICRGSCRSIEGLNMYEALSACKEH- 413

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L++ GGHAMAAGL++           F  +A   +      P   ++  +    + + L
Sbjct: 414 -LLQFGGHAMAAGLSLREEELPAFRAAFAAYAGAHLSEEDYEPKVSVEFEMMPEELTLDL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           ++ L    PYG GNP P F   N + +    +     HL+    ++D   + ++ +    
Sbjct: 473 VEELSLLEPYGMGNPKPYFGCRNVRGREAMAIGREQNHLRFKLGTED-APVTSLMWNRAD 531

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH-FAKK 600
                       + + V     +N W G +  Q  V D SP +    F +K
Sbjct: 532 -----LAAAVNRETLDVVYAPAINEWNGRRSLQCMVEDLSPAQSERVFPEK 577


>gi|324328312|gb|ADY23572.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 779

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNS--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M+       TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|218261690|ref|ZP_03476425.1| hypothetical protein PRABACTJOHN_02093 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223854|gb|EEC96504.1| hypothetical protein PRABACTJOHN_02093 [Parabacteroides johnsonii
           DSM 18315]
          Length = 574

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/581 (28%), Positives = 283/581 (48%), Gaps = 21/581 (3%)

Query: 17  RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +W      +E +++   +  +  +   V  +LV R + +++  K F  PS+  L  DP +
Sbjct: 4   KWNFQTPTEEELHKRDKLASEMGLSPFVCLLLVQRGLSTVEEVKKFFKPSLNDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA +R+ +A+ N EKI+I+GDYDVDG  +V+L+ ++L   S   + YIPDR  +G
Sbjct: 63  MPDMEKAVKRLNKALGNKEKILIYGDYDVDGTTAVSLVYKYLRPYSSTLDFYIPDRYDEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  L+I++DCG  + + ++YA   GID I+ DHH        A A+
Sbjct: 123 YGISYKGIDYARENGITLVISLDCGIKAIEKIEYAKQLGIDFIICDHHMPDDTLPDAVAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  R+D +    HL   GV F  +    +     N  P   DL  LL+L A++   D+V
Sbjct: 183 LDAKRVDSVYPYEHLSGCGVGFKFMQAFAK----SNNFP-FADLEKLLELTAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR     GL       + GLK +I+   +S   IT  ++ + IGP INA GR+  
Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLSGKEITISDIVFKIGPRINASGRMMN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL++ D       +  ++  N+ RR ++  + ++A A +  +  +++    I+V
Sbjct: 298 GKEAVELLLAKDVDVAREKSESINQYNEERRELDKKITDEANAII-DEFQNMEDRKAIIV 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL EK+ RP+  ++   +    GS RS+ GFDI K +       +
Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F K A + +     TP   ID VL+   +N   +
Sbjct: 414 LENFGGHTYAAGLSLKEENLDAFTQRFLKLAADEIIPEQMTPQIDIDAVLDLQDINSKFM 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF-ESQDSETLQAIAFRVY 549
             L+   P+G  N  PVF     K   + ++V     H+++   + + +  +  IAF + 
Sbjct: 474 SELKKMNPFGPDNQKPVFCSLGVKDYGTSKLVGKDLEHIKLELIDDKSNTPIHGIAFGMR 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                        K  ++   +  N + G+   QL V D  
Sbjct: 534 QHN----THIKNMKPFNICYTIEENTYNGNTSLQLMVKDIK 570


>gi|157372124|ref|YP_001480113.1| ssDNA exonuclease RecJ [Serratia proteamaculans 568]
 gi|157323888|gb|ABV42985.1| single-stranded-DNA-specific exonuclease RecJ [Serratia
           proteamaculans 568]
          Length = 577

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/565 (32%), Positives = 276/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++  ++ R+   R V    A+  L  S++ ++P    L   D A   + QA+  S +IM+
Sbjct: 21  SLHPLLRRLYALRGV---QAEQELERSVKGMLP-WQQLDGIDTAVGILQQALAASRRIMV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     +  +  +P+R  DGYG +P ++E+    GA+LI+TV
Sbjct: 77  VGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPEVVEQAATRGAELILTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A  +G+ V+V DHH        A A+VNPN          L   GV F
Sbjct: 137 DNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLRGCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPLDANNRILVYQGLNRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +  
Sbjct: 257 AGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           MLA  LD LN  RR +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 MLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   +G   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F       +   +   V   DG L    +++   ++L   GP+G   P
Sbjct: 437 LEESKFDEFRQRFGDLVGEWLDPAMLEGVIWSDGELAMQELSLETAELLREGGPWGQAFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + 
Sbjct: 497 EPTFDGT-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG++  QL +    P
Sbjct: 552 LAYKLDVNEFRGNRNVQLLIQHLWP 576


>gi|228910245|ref|ZP_04074063.1| Exonuclease RecJ [Bacillus thuringiensis IBL 200]
 gi|228849409|gb|EEM94245.1| Exonuclease RecJ [Bacillus thuringiensis IBL 200]
          Length = 779

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|301055917|ref|YP_003794128.1| single-stranded-DNA-specific exonuclease [Bacillus anthracis CI]
 gi|300378086|gb|ADK06990.1| single-stranded-DNA-specific exonuclease [Bacillus cereus biovar
           anthracis str. CI]
          Length = 779

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|84393961|ref|ZP_00992701.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio splendidus
           12B01]
 gi|84375405|gb|EAP92312.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio splendidus
           12B01]
          Length = 578

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/568 (31%), Positives = 280/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ V+R +        L  + + L      L   D A   + +AI   ++I+I
Sbjct: 18  HLPDLLKRIYVSRGIDSADQ---LETAAKGLHSY-QKLGGIDAAVELLFKAIQQQKRIII 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIELGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +++A  QG+DV+V DHH   +E   A A+VNPN          L   GV F
Sbjct: 134 DNGVSSIDGVRFAKEQGLDVLVTDHHLPGNELPIADAMVNPNLESCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+      +      L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     +       S + +    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G   GS RSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F R    F       +       +   DG L     ++   + L S GP+G   P
Sbjct: 434 IMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAETLRSGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K +H+   L +N +RG++  QL V    
Sbjct: 549 KTVHLAFKLDINEFRGNQSLQLMVDHIE 576


>gi|330964090|gb|EGH64350.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 569

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/562 (31%), Positives = 284/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           +L  LLDLVAL +V DVVPL   NR  V +GLM  R  
Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RLKE
Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L +AGP+G   P P+
Sbjct: 432 ENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFSVDR----DIWPNPTIRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V+  +P
Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568


>gi|114048716|ref|YP_739266.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-7]
 gi|113890158|gb|ABI44209.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-7]
          Length = 574

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/565 (29%), Positives = 273/565 (48%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V  +  +  L   +R     P  +   + AA+ I  A+   + I+I
Sbjct: 19  HLPPLLRQLYARRGVMPNECELVLKGLLR-----PDTMKGLEPAAKLIADAMQQDKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L        +  IP+R   GYG +P ++    ++ A+L+ITV
Sbjct: 74  VGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH    E   A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPGCQFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  +          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ Q    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G++ K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F      +      ++     T     DG L  + + + +  +L +AGP+G    
Sbjct: 434 LKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPAELTLEIAQLLRNAGPWGQSFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+  S   L AIAF V      +  +Q       
Sbjct: 494 EPLFDGY-FKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG+   QL V    P
Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573


>gi|206969586|ref|ZP_03230540.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH1134]
 gi|206735274|gb|EDZ52442.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH1134]
          Length = 779

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|47566598|ref|ZP_00237420.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           G9241]
 gi|47556628|gb|EAL14960.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           G9241]
          Length = 796

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 24  RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 80

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 81  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 140

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 141 GPNEDAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 200

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 201 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 249

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 250 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 309

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 310 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 368

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 369 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 426

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 427 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 486

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 487 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 543

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 544 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 590


>gi|228967485|ref|ZP_04128513.1| Exonuclease RecJ [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792200|gb|EEM39774.1| Exonuclease RecJ [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     L    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGLYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|229093480|ref|ZP_04224583.1| Exonuclease RecJ [Bacillus cereus Rock3-42]
 gi|228689951|gb|EEL43755.1| Exonuclease RecJ [Bacillus cereus Rock3-42]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|319651682|ref|ZP_08005809.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp.
           2_A_57_CT2]
 gi|317396749|gb|EFV77460.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp.
           2_A_57_CT2]
          Length = 772

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/575 (30%), Positives = 291/575 (50%), Gaps = 25/575 (4%)

Query: 31  LAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
             ++++  I  + A +L+NR +    +  +          DP ++TD  KA  RI +AI 
Sbjct: 2   QQLSKELNISPLAASLLINRGMDTVDSARYFLLDKDQEFHDPCLMTDMAKAVSRIKEAIE 61

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
             E I+IFGDYD DG  S ++MM  L     +   YIP+R  +GYGPN    E+  + G 
Sbjct: 62  KQEPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEQAADTGI 121

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
           +LIITVD G ++ +  + A   G+D+I+ DHH+   E   A+A+V+P   D       L 
Sbjct: 122 RLIITVDTGISAVNEAKAAKELGMDLIITDHHEPGHELPEAWAIVHPKHPDSRYPFRELA 181

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
             GV F +   +Y  +              LL++ A+ T+ D+V L G NR    +G+  
Sbjct: 182 GVGVAFKLAHALYGEMPD-----------HLLEIAAIGTIADLVSLTGENRLIAKRGIQK 230

Query: 271 ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
            +   N GLKAL +   I    I  E +G+ IGP +NA GR+  ++    LL+++D  E 
Sbjct: 231 LKSTKNTGLKALFKAAGIELPSINEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEA 290

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           + +A ++++LN+ R+ + + +  QA  +V       +  SVIVV  + W+ G++G++A++
Sbjct: 291 QAIAEEIEMLNKERQAIVNDIAAQAVKEVEANFPISKN-SVIVVGKEGWNAGVIGIVASK 349

Query: 390 LKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448
           L EKF RP+  +S++ + G   GS RSI+GFD+ K +S      IL   GGH MAAG+T+
Sbjct: 350 LVEKFYRPAIVLSYDSDKGLAKGSARSIKGFDLFKNLSEC--RDILPHFGGHPMAAGMTL 407

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              +   L D     A+  +      PV  IDGV +   ++++ I+ ++   P+G GNP 
Sbjct: 408 SIESVDDLRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMQLLAPFGMGNPK 467

Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG-KRM 565
           P        + ++R +     H+++T E+ D  +L  I F      LG    Q     ++
Sbjct: 468 PKVMIKEANIAAMRKIGSDQTHIKVTIEN-DGSSLDGIGFG-----LGHLHEQISPYSKL 521

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            V G L +N W   K+ Q+ + D +      F  +
Sbjct: 522 SVIGELSINEWNNIKKPQIFLQDMAVNSWQLFDIR 556


>gi|237800098|ref|ZP_04588559.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022954|gb|EGI03011.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 571

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 286/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R VS +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYASRGVSCE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCNFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFDSYQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG++IGP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPARITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQNR+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVRLDELNQNRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RPS A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPSIAFASAGEGVLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              +F    + F +     +     T     DG L     ++ L   L + GP+G   P 
Sbjct: 432 PEEHFPAFAEAFDQEVRRQLEEQDLTGRLLSDGSLAVEEFHLELARALRNGGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHLAP 570


>gi|196044795|ref|ZP_03112029.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           03BB108]
 gi|225866390|ref|YP_002751768.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           03BB102]
 gi|229186648|ref|ZP_04313809.1| Exonuclease RecJ [Bacillus cereus BGSC 6E1]
 gi|196024283|gb|EDX62956.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           03BB108]
 gi|225785687|gb|ACO25904.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           03BB102]
 gi|228596907|gb|EEK54566.1| Exonuclease RecJ [Bacillus cereus BGSC 6E1]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|218905604|ref|YP_002453438.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH820]
 gi|218535730|gb|ACK88128.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH820]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYS--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|52141097|ref|YP_085732.1| single-stranded-DNA-specific exonuclease [Bacillus cereus E33L]
 gi|51974566|gb|AAU16116.1| single-stranded-DNA-specific exonuclease [Bacillus cereus E33L]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|331009237|gb|EGH89293.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 571

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGGLLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DDS    
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDSTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|229105047|ref|ZP_04235699.1| Exonuclease RecJ [Bacillus cereus Rock3-28]
 gi|228678357|gb|EEL32582.1| Exonuclease RecJ [Bacillus cereus Rock3-28]
          Length = 773

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E   R   + +K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNE--ERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  N +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKDISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|298488289|ref|ZP_07006321.1| Single-stranded-DNA-specific exonuclease recJ [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157111|gb|EFH98199.1| Single-stranded-DNA-specific exonuclease recJ [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 571

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLTRLIPY-QQLKGIDAAVDLLVTALQEGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E      S IT+ +LG++IGP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARRESSRITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAAEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHGI-FQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|289625881|ref|ZP_06458835.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646221|ref|ZP_06477564.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867539|gb|EGH02248.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 571

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLTRLIPY-QQLKGIDAAVDLLVTALQEGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E      S IT+ +LG++IGP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARRESSRITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAAEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHGI-FQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570


>gi|229175083|ref|ZP_04302600.1| Exonuclease RecJ [Bacillus cereus MM3]
 gi|228608379|gb|EEK65684.1| Exonuclease RecJ [Bacillus cereus MM3]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLKLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     N   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGANVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +           +LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------NLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|229071917|ref|ZP_04205128.1| Exonuclease RecJ [Bacillus cereus F65185]
 gi|229081673|ref|ZP_04214168.1| Exonuclease RecJ [Bacillus cereus Rock4-2]
 gi|228701677|gb|EEL54168.1| Exonuclease RecJ [Bacillus cereus Rock4-2]
 gi|228711213|gb|EEL63177.1| Exonuclease RecJ [Bacillus cereus F65185]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|228954693|ref|ZP_04116716.1| Exonuclease RecJ [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805020|gb|EEM51616.1| Exonuclease RecJ [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|323493663|ref|ZP_08098784.1| ssDNA exonuclease RecJ [Vibrio brasiliensis LMG 20546]
 gi|323312186|gb|EGA65329.1| ssDNA exonuclease RecJ [Vibrio brasiliensis LMG 20546]
          Length = 578

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/568 (30%), Positives = 281/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +I  ++ R+ ++R +        L  + R L      L   DKA   +  A+  +++I++
Sbjct: 18  SIAPLLKRIYISRGIRTIEQ---LETTARALHSY-QKLHGIDKAVELLFSALQTNKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  QG+ V+V DHH    E     A+VNPN  +       L   GV F
Sbjct: 134 DNGVSSIEGVRYAKQQGLQVLVTDHHLPGHELPDVDAMVNPNLQECAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R++            L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKNGWFTQQGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     Q  +      +V+    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGETDMPHGLVLFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEKF RP  A +   +G   GS RSI G  +  ++        G+++K GGHAMAAGLT
Sbjct: 374 IKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDVLDRIDTQNPGMIIKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  NF R    F +     +       V   DG L     ++   + L + GP+G   P
Sbjct: 434 IKESNFERFSQLFDEAVKQDLDDAALKGVILSDGELAPEEFSMHTAETLRAGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL +    
Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLMIDHIE 576


>gi|229032059|ref|ZP_04188041.1| Exonuclease RecJ [Bacillus cereus AH1271]
 gi|228729251|gb|EEL80246.1| Exonuclease RecJ [Bacillus cereus AH1271]
          Length = 779

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNN--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-EKNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVAELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|188534905|ref|YP_001908702.1| ssDNA exonuclease RecJ [Erwinia tasmaniensis Et1/99]
 gi|188029947|emb|CAO97831.1| Single-stranded-DNA-specific exonuclease [Erwinia tasmaniensis
           Et1/99]
          Length = 572

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 193/560 (34%), Positives = 276/560 (49%), Gaps = 17/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  +R VS       L    + L P    L+  ++A   + +A+ ++  IMI
Sbjct: 21  DLHPLLRRLYAHRGVS---CAGELERGAKNLHP-FQSLSGIERAVTLLQKALADNLCIMI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALAVLSLRGMGGQNVKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A  +GI VIV DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLNDCTFPSRALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275
            +++ +   LR D       +L  LLDLVAL TV DVVPL   NR  V +GL   R  + 
Sbjct: 197 YLMLALRARLR-DGGANGLPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +  MLA 
Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLGQARMLAS 315

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A       +         I +    WH G+VG+LA+RLKE+
Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESTSETLPLGIAMYHPEWHQGVVGILASRLKER 375

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A +   DG   GSGRS+ G  +   +        G++VK GGHAMAAGL++E  
Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSVTGLHMRDALERLDTLHPGLIVKFGGHAMAAGLSLEEA 435

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F     + + A     V   DG L A  + +   ++L  AGP+G   P P F
Sbjct: 436 RFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLREAGPWGQAFPEPTF 495

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                KL   R+V   HL+M  E       L  IAF V      +       K++ +   
Sbjct: 496 DGR-FKLLQQRLVGERHLKMMIEPLGGGPLLDGIAFNVDTALWPD----PSVKQVELAYK 550

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L VN +RG++  QL V    
Sbjct: 551 LDVNEFRGNRNVQLIVDHIW 570


>gi|167753847|ref|ZP_02425974.1| hypothetical protein ALIPUT_02132 [Alistipes putredinis DSM 17216]
 gi|167658472|gb|EDS02602.1| hypothetical protein ALIPUT_02132 [Alistipes putredinis DSM 17216]
          Length = 589

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/596 (29%), Positives = 279/596 (46%), Gaps = 34/596 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RWV    Q       A+     I  ++A +LV R +   + AK F NP +  L  DP +
Sbjct: 5   KRWVVKP-QGNPEAVAAMAAATGISPVLANLLVQRGIDTLEKAKKFFNPQLSDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVD 133
           + D DKA  R+ +A+ N EKIM++GDYDVDG  +VAL+ +FL      +   YIPDR  +
Sbjct: 63  MKDMDKAVERVERAVRNREKIMVYGDYDVDGTTAVALVYKFLRQIGHKDLLFYIPDRYTE 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++    +GA LII +DCG  + + + YA  +G+D I+ DHH    E   A A
Sbjct: 123 GYGISTKGIDHAARKGATLIIALDCGIKAIEKVDYAKRKGVDFIICDHHLPAEEIPRAVA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P R D       L   GV F ++    +             +  LLDL+A++   D+
Sbjct: 183 VLDPKRADCSYPFDELSGCGVGFKLVQAYCQKNGI-----PFQQIEPLLDLLAVSIASDI 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           VPL+  NR     GL+      + GL ++I+   +    IT +++ + IGP INA GR+ 
Sbjct: 238 VPLVDENRILAHYGLLRLNASPSKGLLSIIKICGLDRHNITIDDIVFKIGPRINAAGRMR 297

Query: 313 ESNL-----------GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
                             LLI  +    E     +D  NQ+R+ ++ ++ ++A   +   
Sbjct: 298 MDENDENAAPSGGYAAVNLLIEGNESLAEEFGSVIDGFNQDRKCIDRSVTQEAHDFIEAH 357

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
             +++ A   V+   RW  GIVG++A+RL E + RP+  ++   +G   GS RS+ GFD+
Sbjct: 358 A-ELKAAKSTVIYNPRWMKGIVGIVASRLIETYYRPTVVLT-MSNGFVTGSARSVPGFDL 415

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            + +       +L   GGH  AAGLT+           F  +    +  +   P  +ID 
Sbjct: 416 YQAIESC--SDLLENFGGHMYAAGLTMRPERVEEFTRRFNAYVEENIDPITLQPQVEIDS 473

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTF--ESQ 536
            L  S +  A    L    P+G GNP PVF           ++V     HL+M      +
Sbjct: 474 ELFFSNITPAFRRDLNRFQPFGPGNPAPVFVTRGVVSHGETKLVGADCEHLRMDLMQRQK 533

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            + T+Q IAF+        +     G  + V   +  N++RGS   QLR+ D  P+
Sbjct: 534 PNTTIQTIAFQQPT----HYEWIRAGHPIDVCYQIVENHYRGSVSVQLRIKDIKPL 585


>gi|118479566|ref|YP_896717.1| exonuclease RecJ [Bacillus thuringiensis str. Al Hakam]
 gi|118418791|gb|ABK87210.1| exonuclease RecJ [Bacillus thuringiensis str. Al Hakam]
          Length = 798

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 26  RWKEKEY--NGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 82

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 83  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 142

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 143 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 202

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 203 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 251

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 252 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 311

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 312 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 370

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 371 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 428

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 429 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 488

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 489 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 545

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 546 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 592


>gi|238787319|ref|ZP_04631118.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia
           frederiksenii ATCC 33641]
 gi|238724581|gb|EEQ16222.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia
           frederiksenii ATCC 33641]
          Length = 577

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 278/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKNAEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN +        L   GV F 
Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPVAEAIINPNLVGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR      L      +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRDCGWFELRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     +TA +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLTASDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTCTELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG L  + +++   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPMNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576


>gi|28868695|ref|NP_791314.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28851934|gb|AAO55009.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 569

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/562 (31%), Positives = 283/562 (50%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
             D+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VCDFDADGATACTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           +L  LLDLVAL +V DVVPL   NR  V +GLM  R  
Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTRAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RLKE
Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPMESMPFGLCLFDAE-WHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L +AGP+G   P P+
Sbjct: 432 DNFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVRLDGIAFSVDR----DIWPNPNIRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V+  +P
Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568


>gi|146291996|ref|YP_001182420.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           putrefaciens CN-32]
 gi|145563686|gb|ABP74621.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           putrefaciens CN-32]
          Length = 584

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V     +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 29  HLPPLLKQLYARRGVMPHECELALQGLLR-----PETMKGLVEAAAIIADAMQANKSILI 83

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+L+ITV
Sbjct: 84  VGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 143

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ VI+ DHH    E   A A+VNPN+         +   GV F
Sbjct: 144 DNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADAIVNPNQPGCPFASKSIAGVGVAF 203

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 204 YLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 263

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 264 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 323

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 324 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQEDWHQGVIGILASR 383

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 384 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 443

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +       +   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 444 LKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELTPTELNLEIAQLLRNAGPWGQAFE 503

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 504 EPLFDGY-FKIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATINHA----R 558

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 559 IVYKLDVNEYRGNFSLQLMVEQIE 582


>gi|229123950|ref|ZP_04253142.1| Exonuclease RecJ [Bacillus cereus 95/8201]
 gi|228659252|gb|EEL14900.1| Exonuclease RecJ [Bacillus cereus 95/8201]
          Length = 779

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAGEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|332829388|gb|EGK02042.1| single-stranded-DNA-specific exonuclease RecJ [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 578

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/581 (29%), Positives = 289/581 (49%), Gaps = 21/581 (3%)

Query: 16  FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           ++W    L  +   +   + +K  I  ++ ++L+ R +S  + A  F +P+++ L  DP 
Sbjct: 3   YKWNYEALTTQQKEQRDDLAKKLGISPVLCQLLIQRGISSSEDAYKFFHPNLKDLH-DPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D DKA +RI +A+   ++I+I+GDYDVDG  +VAL+ +FL   + N + YIPDR  +
Sbjct: 62  LLPDMDKAIKRIEKALGQKQRILIYGDYDVDGTTAVALVYKFLRKFTTNLDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA ++GID I+ DHH        A A
Sbjct: 122 GYGISEQGIDYAEETGVKLIIALDCGIKAIEKVAYAKSKGIDFIIGDHHMPDEILPDAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++  R+D      HL   GV F ++  + +  + D       +L  LLDLVA++   D+
Sbjct: 182 VIDAKRIDSTYPYEHLSGCGVGFKLVQALAQNNKID-----FSELTDLLDLVAVSVASDI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           VP+ G NR     GL       + GLK +IE   ++   IT  ++ + IGP INA GR+ 
Sbjct: 237 VPITGENRVLTYFGLKQINSNPSLGLKGIIEICGLTYKGITVNDIIFKIGPRINASGRMM 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL+++  ++    +  +D  N +RR ++  + ++A   +     D+ +   +V
Sbjct: 297 KGKEAVDLLLANTIEDAREKSANIDHYNDDRRELDKRITDEAIQFIDG-TVDMSKKKSLV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WH G++G++A+RL EK+ RP+  ++ +  G   GS RS+ GFD+ K +     + 
Sbjct: 356 IYDETWHKGVIGIVASRLTEKYLRPAVVLT-KSQGLITGSARSVMGFDVYKAIEAC--KD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL   GGH  AAGL+++  N       F+  +  ++   +  P   ID  L+   +    
Sbjct: 413 ILENFGGHTYAAGLSLKEENLAEFQRRFEALSLEMIAPEMMRPQICIDAELSFKEITPKF 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLAHLQMTFESQDSET---LQAIAFRV 548
           I  L    P+G  N NP+F   + +   + + V   ++ +  E  D  T   +  IAFR 
Sbjct: 473 ISDLAGFAPFGPENLNPIFVTWDVQDYGTSKPVGKDNVHLKLEMIDKTTTIPVNGIAFRQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                    M   G+   +   L  N   G    QL V D 
Sbjct: 533 SANS----EMVKNGRPFDICYTLEENTHNGKTNIQLYVKDI 569


>gi|269103440|ref|ZP_06156137.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163338|gb|EEZ41834.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 574

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/563 (31%), Positives = 276/563 (49%), Gaps = 20/563 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP  + R+  +R ++ D     L    + L+     L    +A   + QA+ N+++I+I 
Sbjct: 19  IPARLKRIYASRGITHD---GELERGAKGLLSY-NQLHGMAQAVDLLEQALRNNQRIIIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
            D+D DGA S AL +         N +  +P+R  DGYG +P ++++ + +G ++I+TVD
Sbjct: 75  SDFDADGATSSALSVLAFKMLGCQNVDYLVPNRFDDGYGLSPEVVDQALAKGVEVIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   + YA  +G+ V+V DHH        A A+VNPN  +       LC  GV F 
Sbjct: 135 NGVSSLSGVAYAKEKGLTVVVTDHHLPGDILPNADAIVNPNLNECGFPSKALCGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR  +          +L  LLDLVAL TV DVV L G NR  V +GL   R 
Sbjct: 195 LMLALRAQLRATDWFTQQNIPEPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++ALIE  N     I   +LG+ +GP INA GR+ +   G  LL+ D+ Q    
Sbjct: 255 GRCRPGIQALIEVANRDPQKIVTSDLGFALGPRINAAGRLDDMAFGVELLLCDNIQSARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390
           +A +LD LNQ R+ +E  M E+A A               +V     WH G++G+LA+R+
Sbjct: 315 MATELDGLNQTRKEIEQGMKEEALAICERLKFSANDMPYGLVLFQKDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEKF RP    +   + +  GS RSI G  +  ++        G++ K GGHAMAAGLT+
Sbjct: 375 KEKFHRPVICFADAGNEQIKGSCRSIPGLHMRDVLDLIDTQNPGMIAKFGGHAMAAGLTI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +          F +   N +       V   DG L A+  N+   +ML + GP+G   P 
Sbjct: 435 DTKQLDAFSRAFDQAVRNELGEDELKGVLLTDGELEANEFNLDTAEMLRAGGPWGQQFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   ++V   HL+M  E       + AIAF V      +    +  +++ +
Sbjct: 495 PTFDGT-FRLLHQKLVGGKHLKMMVEPLHGGSVIDAIAFNVDLKRWPD----ASVQQVEL 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L +N +RG++  QL +   +
Sbjct: 550 VYRLDINEFRGNRSVQLMIEHLA 572


>gi|228923161|ref|ZP_04086452.1| Exonuclease RecJ [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836540|gb|EEM81890.1| Exonuclease RecJ [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 779

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|196034344|ref|ZP_03101753.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus W]
 gi|228948123|ref|ZP_04110407.1| Exonuclease RecJ [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195992886|gb|EDX56845.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus W]
 gi|228811481|gb|EEM57818.1| Exonuclease RecJ [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 779

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYVALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|22127150|ref|NP_670573.1| ssDNA exonuclease RecJ [Yersinia pestis KIM 10]
 gi|45443321|ref|NP_994860.1| ssDNA exonuclease RecJ [Yersinia pestis biovar Microtus str. 91001]
 gi|51597476|ref|YP_071667.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis IP 32953]
 gi|108806376|ref|YP_650292.1| ssDNA exonuclease RecJ [Yersinia pestis Antiqua]
 gi|108813249|ref|YP_649016.1| ssDNA exonuclease RecJ [Yersinia pestis Nepal516]
 gi|145597932|ref|YP_001162008.1| ssDNA exonuclease RecJ [Yersinia pestis Pestoides F]
 gi|150260099|ref|ZP_01916827.1| single-stranded-DNA-specific exonuclease [Yersinia pestis
           CA88-4125]
 gi|153947712|ref|YP_001399865.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis IP 31758]
 gi|162421398|ref|YP_001608156.1| ssDNA exonuclease RecJ [Yersinia pestis Angola]
 gi|165925149|ref|ZP_02220981.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937313|ref|ZP_02225877.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010309|ref|ZP_02231207.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212665|ref|ZP_02238700.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400018|ref|ZP_02305536.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167418963|ref|ZP_02310716.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425248|ref|ZP_02317001.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470507|ref|ZP_02335211.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           FV-1]
 gi|218928063|ref|YP_002345938.1| ssDNA exonuclease RecJ [Yersinia pestis CO92]
 gi|229837576|ref|ZP_04457738.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Pestoides A]
 gi|229840799|ref|ZP_04460958.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842642|ref|ZP_04462797.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903705|ref|ZP_04518818.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Nepal516]
 gi|270487484|ref|ZP_06204558.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis KIM
           D27]
 gi|294502943|ref|YP_003567005.1| single-stranded-DNA-specific exonuclease [Yersinia pestis Z176003]
 gi|21960211|gb|AAM86824.1|AE013928_9 ssDNA exonuclease [Yersinia pestis KIM 10]
 gi|45438190|gb|AAS63737.1| single-stranded-DNA-specific exonuclease [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590758|emb|CAH22403.1| Single-stranded-DNA-specific exonuclease [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776897|gb|ABG19416.1| exonuclease RecJ [Yersinia pestis Nepal516]
 gi|108778289|gb|ABG12347.1| exonuclease RecJ [Yersinia pestis Antiqua]
 gi|115346674|emb|CAL19557.1| single-stranded-DNA-specific exonuclease [Yersinia pestis CO92]
 gi|145209628|gb|ABP39035.1| exonuclease RecJ [Yersinia pestis Pestoides F]
 gi|149289507|gb|EDM39584.1| single-stranded-DNA-specific exonuclease [Yersinia pestis
           CA88-4125]
 gi|152959207|gb|ABS46668.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354213|gb|ABX88161.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           Angola]
 gi|165914787|gb|EDR33400.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923349|gb|EDR40500.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990795|gb|EDR43096.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205957|gb|EDR50437.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962957|gb|EDR58978.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050726|gb|EDR62134.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055648|gb|EDR65432.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679475|gb|EEO75578.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Nepal516]
 gi|229690952|gb|EEO83006.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697165|gb|EEO87212.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704264|gb|EEO91275.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Pestoides A]
 gi|262360978|gb|ACY57699.1| single-stranded-DNA-specific exonuclease [Yersinia pestis D106004]
 gi|262364918|gb|ACY61475.1| single-stranded-DNA-specific exonuclease [Yersinia pestis D182038]
 gi|270335988|gb|EFA46765.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis KIM
           D27]
 gi|294353402|gb|ADE63743.1| single-stranded-DNA-specific exonuclease [Yersinia pestis Z176003]
 gi|320014034|gb|ADV97605.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 577

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/564 (32%), Positives = 277/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I 
Sbjct: 22  LPPLLRRLYASRGVKDAQE---LERGVKGLLA-WQKLDGIDAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F       + A     V   DG LN + +++   ++L   GP+G   P 
Sbjct: 438 EEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V    P
Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576


>gi|120600075|ref|YP_964649.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp.
           W3-18-1]
 gi|120560168|gb|ABM26095.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp.
           W3-18-1]
          Length = 584

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V     +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 29  HLPPLLKQLYARRGVMPHECELALQGLLR-----PETMKGLVEAAAIIADAMQANKSILI 83

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+L+ITV
Sbjct: 84  VGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 143

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ VI+ DHH    E   A A+VNPN+         +   GV F
Sbjct: 144 DNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADAIVNPNQPGCPFASKSIAGVGVAF 203

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 204 YLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 263

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 264 AGRCRVGITALLEVAKRNPARILASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 323

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 324 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQEDWHQGVIGILASR 383

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 384 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 443

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +       +   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 444 LKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELTPTELNLEIAQLLRNAGPWGQAFE 503

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 504 EPLFDGY-FKIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATINHA----R 558

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 559 IVYKLDVNEYRGNFSLQLMVEQIE 582


>gi|123443574|ref|YP_001007547.1| ssDNA exonuclease RecJ [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090535|emb|CAL13404.1| single-stranded-DNA-specific exonuclease [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 577

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 274/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L   +     + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIEAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A   GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMFHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG L  + +++   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576


>gi|229192620|ref|ZP_04319581.1| Exonuclease RecJ [Bacillus cereus ATCC 10876]
 gi|228590927|gb|EEK48785.1| Exonuclease RecJ [Bacillus cereus ATCC 10876]
          Length = 779

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEVAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|251792901|ref|YP_003007627.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534294|gb|ACS97540.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           aphrophilus NJ8700]
          Length = 573

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/562 (29%), Positives = 282/562 (50%), Gaps = 18/562 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  +R++        L+ ++  +  +P +++  D A   +++A    +KI+I G
Sbjct: 19  DPLLDRLYRSRHIKNA---CQLDRTLAAIH-NPNLMSGLDDAVALLLEAYEKQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L     VN    +P+R   GYG + ++ ++ +    +L+ITVD 
Sbjct: 75  DFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +G++VIV DHH        A A++NPN         +L   GV F +
Sbjct: 135 GVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAHCGFPSKNLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR  V +GL  +  ++ 
Sbjct: 195 MLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++AL E      +  +A +LG+ I P +NA GR+   ++G  LL+++D +    LA+
Sbjct: 255 RFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMENARALAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A          + Q    IV+    WH G++G++A+R+K++
Sbjct: 315 ELDSLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERV 451
           F RP  A + E+DG   GS RSI G  I   +     +    ++K GGHAMAAGL++   
Sbjct: 375 FHRPVIAFAQEQDGILKGSARSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINEN 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +    ++           DG L+ + +N+   + L+SAGP+G   P P+F
Sbjct: 435 YFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                K+   R+V   HL+M  ES+     + AIAF V      +  +    K   +   
Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSI----KTAKLVYK 549

Query: 571 LCVNYWRGSKRCQLRVLDASPV 592
           L +N +RG++  QL +    P+
Sbjct: 550 LDINEFRGNRDIQLLIDYIEPL 571


>gi|271499212|ref|YP_003332237.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii
           Ech586]
 gi|270342767|gb|ACZ75532.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii
           Ech586]
          Length = 576

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 184/566 (32%), Positives = 279/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++P ++ R+   R V        L  S+R L+ D  +L+   +A   + +A+    +I+I
Sbjct: 20  SLPALLRRLYAQRGVRQAQE---LERSLRGLL-DYRLLSGIAQAVDVLCRALAEERRIVI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R  DGYG +P ++ +   +GA+LI+TV
Sbjct: 76  VGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A  +GI+V+V DHH        A A+VNPN +D       L   GV F
Sbjct: 136 DNGISSHAGVDDAHRRGIEVVVTDHHLPGDTLPAAEAMVNPNLVDCAFPSKALAGVGVAF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 196 YLMMALRARLRESGWFTERGLAEPNLAELLDLVALGTVADVVPLDVNNRILVAQGLSRIR 255

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N   + + A +LG+ +GP +NA GR+ + ++G  LL+  D  +  
Sbjct: 256 AGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCHDIVQAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           MLA  LD LNQ+RR +E+ M  +A               +   +    WH G+VG+LA+R
Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALQLCEQLERSRDTLPLGLAMYHPDWHQGVVGILASR 375

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLS 435

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +    F      F       + A     V   DG L    +++   +ML  AGP+G   P
Sbjct: 436 LAEERFDEFRQRFADLVGEWLDASQLEGVVWSDGELAVPELSLGTAEMLREAGPWGQAFP 495

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V      +    S  + + 
Sbjct: 496 EPLFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTVLWPD----SSVREVE 550

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L VN +RG +  QL +    P+
Sbjct: 551 LAYKLDVNEFRGKRSVQLLIEHLWPL 576


>gi|113969141|ref|YP_732934.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-4]
 gi|113883825|gb|ABI37877.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-4]
          Length = 574

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/565 (29%), Positives = 274/565 (48%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V  +  +  L   +R     P  +   ++AA+ I  A+   + I+I
Sbjct: 19  HLPPLLRQLYARRGVMPNECELVLKGLLR-----PDTMKGLEQAAKLIADAMQQDKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L        +  IP+R   GYG +P ++    ++ A+L+ITV
Sbjct: 74  VGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH    E   A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPGCQFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  +          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ Q    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G++ K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F      +      ++     T     DG L  + + + +  +L +AGP+G    
Sbjct: 434 LKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+  S   L AIAF V      +  +Q       
Sbjct: 494 EPLFDGY-FKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHAC---- 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG+   QL V    P
Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573


>gi|229163357|ref|ZP_04291309.1| Exonuclease RecJ [Bacillus cereus R309803]
 gi|228620138|gb|EEK77012.1| Exonuclease RecJ [Bacillus cereus R309803]
          Length = 779

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNN--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVAELRRRLNEQAEVILTEADFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|228941577|ref|ZP_04104125.1| Exonuclease RecJ [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974506|ref|ZP_04135073.1| Exonuclease RecJ [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981100|ref|ZP_04141401.1| Exonuclease RecJ [Bacillus thuringiensis Bt407]
 gi|228778641|gb|EEM26907.1| Exonuclease RecJ [Bacillus thuringiensis Bt407]
 gi|228785223|gb|EEM33235.1| Exonuclease RecJ [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818084|gb|EEM64161.1| Exonuclease RecJ [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942190|gb|AEA18086.1| single-stranded-DNA-specific exonuclease recJ [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 779

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 278/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|212710037|ref|ZP_03318165.1| hypothetical protein PROVALCAL_01090 [Providencia alcalifaciens DSM
           30120]
 gi|212687244|gb|EEB46772.1| hypothetical protein PROVALCAL_01090 [Providencia alcalifaciens DSM
           30120]
          Length = 577

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP+++ R+  +R ++       L      L+ D   L+  + A   +  A+   +KI I
Sbjct: 21  NIPELLQRIYASRGITD---IAQLERKASNLL-DYRSLSGVENALTLLYVALVEHQKITI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +R L     VN N  +P+R  +GYG  P ++++   +G  LIITV
Sbjct: 77  VGDFDADGATSTALAIRALKAMGYVNLNYIVPNRFENGYGLTPLVVDEAYKQGTDLIITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+D +  A   G+ VI+ DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHDGVDAAHQYGMKVIITDHHLPGEILPTADAIINPNLSDCQFASKSLAGVGVTF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ            +L   LDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMSALRAHLRQQQWFEKQGISEPNLAEYLDLVALGTVADVVPLDTNNRILVHQGLNRVR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+KALIE      S + A + G+ +GP +NA GR+ + ++   LL++DD     
Sbjct: 257 AGRCCAGIKALIEVSKRDASRLVANDFGFALGPRLNAAGRLDDMSVSIELLLTDDMAHAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA +LD LNQ RR +E+ M ++A       +  D Q  + + +    WH G+VG+LA+R
Sbjct: 317 ELANELDGLNQTRREIEAGMQQEALVLFNKIEYSDNQLPNGLALYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRS++G  +   +      + G++ K GGHAMAAGL+
Sbjct: 377 IKEQFHRPVIAFAPAGDGLLKGSGRSVQGVHMRDALERLNTLQPGLMQKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F+     ++   + + V   DG L  + +++   ++L  +GP+G   P
Sbjct: 437 LEESKFDAFKYHFETLMGELIQPELLSGVIWSDGELLRNQLSLETAELLRESGPWGQAFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            PVF   + +L   ++V   HL++  E       L  I F +      +    +  K+  
Sbjct: 497 EPVFDG-HFQLLQQKLVGEKHLKLMLEPVNGGPMLDGIMFNIDVRRWPD----NSVKKAK 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG+K  QL +    P
Sbjct: 552 IAFKLDVNEFRGNKNVQLMIEHIWP 576


>gi|218899578|ref|YP_002447989.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           G9842]
 gi|218544747|gb|ACK97141.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           G9842]
          Length = 779

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ + P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|228902937|ref|ZP_04067078.1| Exonuclease RecJ [Bacillus thuringiensis IBL 4222]
 gi|228856721|gb|EEN01240.1| Exonuclease RecJ [Bacillus thuringiensis IBL 4222]
          Length = 779

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 278/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     L    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLEGGLYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|294794005|ref|ZP_06759142.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp.
           3_1_44]
 gi|294455575|gb|EFG23947.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp.
           3_1_44]
          Length = 660

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/589 (32%), Positives = 297/589 (50%), Gaps = 24/589 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           I   RW    G +       + ++  +  IVA+++VNR++ +D  + FL  ++  L+ DP
Sbjct: 2   IKKKRWRLCKGDQEKENI--LIRELGVNPIVAKLMVNRHIDVDEGRQFLQGTLSDLL-DP 58

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D A   +++ I + + I+I+GDYDVDG  + +++ RFL     +   YIP+R  
Sbjct: 59  FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +E  I  G  L+ITVDCG +SYD ++   ++ ID+I+ DHH        A 
Sbjct: 119 EGYGLNLEALEHLIERGTALVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDMIPRAK 177

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  + D      +L   GV F +   ++   R +         L  LD+VAL TV D
Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALWLTKRGE-------WYLDDLDIVALGTVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR  V  GL    R+ N G+K LI+        IT+ ++G+ + P +NA GR+
Sbjct: 231 VVPLVGENRIIVKSGLDKMNREPNLGIKKLIDVAGLHERTITSGHIGFTLAPRLNAAGRV 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL++DD   +E +A +L+  N+ R+ +E  + E A   V  Q        V 
Sbjct: 291 THATRAVELLVTDDEDIVEAIADELNETNRERQELERNIHELARVDVANQGHKA--DYVT 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +V G+ WHPG++G++A+RL E+F +P+  IS  + G G GS RSI+GF+I   +     E
Sbjct: 349 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            IL++ GGHA AAG +++      L +   K+   ++      PV  ID  L    +++ 
Sbjct: 406 DILLQFGGHAAAAGFSIDANRIDELRERLTKYCKAVITEEEYIPVVAIDAELPVDDIDVD 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           +ID +    PYG  N  PVFA     +Q I ++     H ++ FE+    TL AIA+   
Sbjct: 466 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKIIFETSSG-TLDAIAWNRP 524

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                 F     G  + V   L  N W+G    QL +    P+      
Sbjct: 525 DL----FKSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPLTEEPIK 569


>gi|310766539|gb|ADP11489.1| ssDNA exonuclease RecJ [Erwinia sp. Ejp617]
          Length = 572

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 193/560 (34%), Positives = 278/560 (49%), Gaps = 17/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  +R VS       L    + L P    L+  +KA   +  A+ +++ IMI
Sbjct: 21  DLNPLLRRLYAHRGVS---CASELERGAKNLHP-FQSLSGIEKAVTLLQHALADNQCIMI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALAVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A  +GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSLAGVALAHQKGIAVVVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275
            +++ +   LR D  V    +L  LLDLVAL TV DVVPL   NR  V +GL   R  + 
Sbjct: 197 YLMLALRARLR-DGGVNGLPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +  MLA 
Sbjct: 256 RPGIRALLEVANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLGQARMLAS 315

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A       +         I +    WH G+VG+LA+RLKE+
Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESTSEALPLGIAMYHPEWHQGVVGILASRLKER 375

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A +   DG   GSGRSI G  +  ++        G++VK GGHAMAAGL++E  
Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSITGLHMRDVLERLDTLHPGLIVKFGGHAMAAGLSLEEA 435

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F     + + A     V   DG L A  + +   ++L  AGP+G   P P F
Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLREAGPWGQAFPEPTF 495

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                KL   R+V   HL++  E       L  IAF V      +       K++ +   
Sbjct: 496 DGK-FKLLQQRLVGERHLKVMIEPLGGGTLLDGIAFNVDTALWPD----PSVKQVELAYR 550

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L VN +RG++  QL +    
Sbjct: 551 LDVNEFRGTRSVQLIIDHLW 570


>gi|117921767|ref|YP_870959.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp.
           ANA-3]
 gi|117614099|gb|ABK49553.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp.
           ANA-3]
          Length = 574

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/565 (29%), Positives = 273/565 (48%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V  +  +  L   +R     P  +   + AA+ I  A+   + I+I
Sbjct: 19  HLPPLLRQLYARRGVMPNECELVLKGLLR-----PDTMKGLELAAKLIADAMQQEKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L        +  IP+R   GYG +P ++    ++ A+L+ITV
Sbjct: 74  VGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH    E   A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPDADAIVNPNQPGCQFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  +          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLARVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ Q    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G++ K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F      +      ++     T     DG L  + + + +  +L +AGP+G    
Sbjct: 434 LKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+  S   L AIAF V      +  +Q       
Sbjct: 494 EPLFDGY-FKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG+   QL V    P
Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573


>gi|75760572|ref|ZP_00740605.1| Single-stranded-DNA-specific exonuclease recJ [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74491941|gb|EAO55124.1| Single-stranded-DNA-specific exonuclease recJ [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 796

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 278/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 24  RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 80

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 81  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 140

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 141 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 200

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     L    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 201 HPKLEGGLYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 249

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 250 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 309

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 310 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 368

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +       GS RSI GFD+    + +    +
Sbjct: 369 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 426

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 427 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 486

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 487 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 543

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 544 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 590


>gi|282850511|ref|ZP_06259890.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula
           ATCC 17745]
 gi|282580004|gb|EFB85408.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula
           ATCC 17745]
          Length = 660

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 188/589 (31%), Positives = 295/589 (50%), Gaps = 24/589 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           I   RW    G +       + ++  +  IVA+++VNR++ +D  + FL  ++  L+ DP
Sbjct: 2   IKKKRWRLCKGDQEKENI--LIRELGVNPIVAKLMVNRHIDVDEGRQFLQGTLSDLL-DP 58

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D A   +++ I + + I+I+GDYDVDG  + +++ RFL     +   YIP+R  
Sbjct: 59  FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +E  I  G  L+ITVDCG +SYD ++   ++ ID+I+ DHH        A 
Sbjct: 119 EGYGLNLEALEHLIERGTALVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDMIPRAK 177

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  + D      +L   GV F +   ++               L  LD+VAL TV D
Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR  V  GL    R+ N G+K LI         IT+ ++G+ + P +NA GR+
Sbjct: 231 VVPLVGENRIIVKSGLEKMNREPNLGIKKLIGVAGLHERTITSGHIGFTLAPRLNAAGRV 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL++DD   +E +A +L+  N+ R+ +E  + E A   V  Q        V 
Sbjct: 291 THATRAVELLVTDDEDIVEAIADELNETNRERQELERNIHELARVDVANQGHKA--DYVT 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +V G+ WHPG++G++A+RL E+F +P+  IS  + G G GS RSI+GF+I   +     E
Sbjct: 349 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GIGKGSCRSIDGFNIYDALKSC--E 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            IL++ GGHA AAG +++      L +   K+   ++      PV  ID  L    +++ 
Sbjct: 406 DILLQFGGHAAAAGFSIDANRIDELRERLTKYCKAVITDEEYIPVVAIDAELPVDDIDVD 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           +ID +    PYG  N  PVFA     +Q I ++     H ++ FE+ +  TL AIA+   
Sbjct: 466 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKIIFETSNG-TLDAIAWNRP 524

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                 F     G  + V   L  N W+G    QL +    P+      
Sbjct: 525 DL----FKSIFVGTVVKVAFSLQKNEWQGMVSPQLMIQAIEPLTEEPIK 569


>gi|251798362|ref|YP_003013093.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           JDR-2]
 gi|247545988|gb|ACT03007.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           JDR-2]
          Length = 677

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/601 (28%), Positives = 282/601 (46%), Gaps = 37/601 (6%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           RW      +E   +A  ++ +  IP +VA++LV R     + A+ FL      L  DP +
Sbjct: 7   RWNLAPWNKEDEQQAEQLSAQLGIPPLVAKLLVQRGYKDKEAAETFLRGGEDRLH-DPYL 65

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    +A  RI QA  N E I I+GDYD DG +S +L++          + YIP R  +G
Sbjct: 66  LIGMTEAVARIRQAADNGEFIRIYGDYDADGVSSTSLLIHVFRELGYTFDYYIPHRASEG 125

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++    +G +LI+TVD G ++Y+ ++YA + GID++V DHH+       A A+
Sbjct: 126 YGLNTGAIDIAAADGVRLIVTVDTGISAYEQVEYAKSLGIDIVVTDHHEPPERIPDAVAV 185

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R D       L   GV F +   +                +   D+V+L T+ D++
Sbjct: 186 VNPKREDCPYPFKGLAGVGVAFKLATALMGRAP-----------MEWTDIVSLGTIADIM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL   NR  V  GL   +   N G +AL E   I    +T+  + + + P INA GR+  
Sbjct: 235 PLTDENRVLVRAGLARLQNTDNTGFRALSEACGIELDQVTSTTVAFGMAPRINAAGRLDH 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-----IQQA 368
           +     LL + D  E    A  LDVLN+ R+ +   ++++AE +   + D        + 
Sbjct: 295 AKRAVELLTTGDYDEAIRAASSLDVLNKERQRIVDGIVKEAELQWQGKRDAARAAGRPEP 354

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427
           +VIV+ G+ W+ G++G++A+++ E++ +P   +    + G   GS RSIEG+D+   ++ 
Sbjct: 355 AVIVLAGEGWNVGVIGIVASKILERYYKPVIVLGIDPDSGMCKGSARSIEGYDLHAALTE 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             E  +L   GGH  AAG+++ R       +   + A   +      P   ID V +   
Sbjct: 415 CDE--LLDHYGGHQAAAGMSLRRDQLPAFEEKLGELAMEWLTEQDWIPKTAIDLVCSVGD 472

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545
            ++  I  L    P+GAGNP+P     + +L   R +     HL+++  S    +L A+ 
Sbjct: 473 ASVHTIGQLALLEPFGAGNPSPRLLLQSAELSDYRTMGKDARHLKLSLRS-GRTSLDAVG 531

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA-------SPVEGHHFA 598
           F +             G  + + G L +N W G ++ QL + D           E  HF 
Sbjct: 532 FGLGELSN----QLQSGLPVDLVGELSINEWNGQRKAQLHIHDLYFGGALARFPEREHFG 587

Query: 599 K 599
           +
Sbjct: 588 Q 588


>gi|304413172|ref|ZP_07394645.1| single-stranded DNA-specific exonuclease [Candidatus Regiella
           insecticola LSR1]
 gi|304284015|gb|EFL92408.1| single-stranded DNA-specific exonuclease [Candidatus Regiella
           insecticola LSR1]
          Length = 576

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 174/563 (30%), Positives = 273/563 (48%), Gaps = 20/563 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+ ++R V        L   ++ L+     L   D A   + Q +   + I+I GD
Sbjct: 23  PLLRRLYISRGVKETQE---LERGVKGLLL-WQQLAGIDTAVDLLQQTMETGQCIVIVGD 78

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      +    +P+R  +GYG +P ++E+   + A LI+TVD G
Sbjct: 79  FDADGATSTALAVLALRSMGAKDVKYLVPNRFEEGYGLSPMIVERVARQNAALIVTVDNG 138

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S+  ++ A  +GI V+V DHH        A A++NPN          L   GV F ++
Sbjct: 139 ISSHAGVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLM 198

Query: 220 VLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQ 274
           + +   L+ +           +L  LLDLVAL TV DVVPL   NR  V +GL  +  ++
Sbjct: 199 LALRARLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILVHQGLSRIRAKR 258

Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
             PG++AL++        + A +LG+ +GP +NA GR+ + ++G  LL+SDD     +LA
Sbjct: 259 CRPGIQALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILA 318

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
            +L+ LNQ RR +E  M  +A A     +  D      I +   +WH G+VG+LA+R+KE
Sbjct: 319 EELNTLNQERREIEQGMQLEALALCNALEDPDHILPYGIAMYHKKWHQGVVGILASRIKE 378

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP  A +   DG   GSGRSI G  +  ++        G++ K GGHAMAAGL +  
Sbjct: 379 RFHRPVIAFAPAGDGMLKGSGRSIMGLHLRDVLEQLNTQNPGLISKFGGHAMAAGLMLAE 438

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
             F      F       + A     V   DG L+   ++    ++L  AGP+G   P P+
Sbjct: 439 NKFEEFRQRFADLVAECLDASQLEGVIWSDGELSIDELSQETAELLREAGPWGQAFPEPI 498

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     ++   R+V   HL++  +S      L  IAF +           S     ++  
Sbjct: 499 FDGQ-FRILQQRLVGEQHLKLILQSVLGGPLLDGIAFNIDTKLWP----NSTTVAANLAY 553

Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592
            L +N ++G ++ QL V    PV
Sbjct: 554 KLDINEFKGRRKLQLLVQQLWPV 576


>gi|326793994|ref|YP_004311814.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas
           mediterranea MMB-1]
 gi|326544758|gb|ADZ89978.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas
           mediterranea MMB-1]
          Length = 573

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/565 (29%), Positives = 256/565 (45%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  + RVL  R V+     D+    +  L+  P    D  KAA+ +  AI + +KI+I
Sbjct: 19  NLPFTLQRVLSCRGVTSAEEIDY---RLPHLLH-PKRFFDIQKAAKILADAIEHGKKILI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S  L +  +           +P+R   GYG  P ++         +++TV
Sbjct: 75  VGDFDADGATSTTLGILAMEAMGAIEPEYLVPNRFEYGYGLTPEIVAVACESKPDVLVTV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S D +  A   G+ VIV DHH        A A+VNPN  +       L   GV+F
Sbjct: 135 DNGIASIDGVLAAKAAGMQVIVTDHHLPGDALPDADAIVNPNHPECEFESKSLAGVGVIF 194

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V+  +   L               +   LDLVAL TV DVVPL   NR  V +G+   +
Sbjct: 195 YVMSALRAELTARRWFEEQHIRPPKMADYLDLVALGTVADVVPLDANNRILVQQGIQRIQ 254

Query: 273 RQG-NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG+ ALIE        + A +LG+++GP +NA GR+ + ++G   L++  S    
Sbjct: 255 SGHARPGILALIELGGRDIARLKASDLGFVVGPRLNAAGRLDDMSIGIECLLATHSHVAR 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
             A +LD LN+ R+ +ES M +QAE ++     +    + +    + WH G++G+LA+R+
Sbjct: 315 EYAQQLDQLNRERKTIESEMKQQAERELDKLTLNEDLPNGLCFYEESWHQGVIGILASRM 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEK  RP  A +  +DG   GS RSI G  I   +         +L K GGHAMAAG+++
Sbjct: 375 KEKCYRPVIAFAQADDGMLKGSARSIPGVHIRDALDLLAKRHPNLLSKFGGHAMAAGMSI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  ++      F +     V       V   DG L +   ++   + +   GP+G   P 
Sbjct: 435 KESDYDAFTRAFDEIITEWVTPEQLEAVIYTDGELASEDFSLGFAEQVRLLGPWGQAFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   R+V   HL++T +  +    L AI F             S      +
Sbjct: 495 PCFDG-VFELIQQRIVGEKHLKLTVKEPRSGILLDAIHFFADLKTWP-----SEHDTARL 548

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG +  QL V    P 
Sbjct: 549 VFKLDINEFRGQRNLQLMVDHIEPS 573


>gi|228960682|ref|ZP_04122326.1| Exonuclease RecJ [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229048118|ref|ZP_04193689.1| Exonuclease RecJ [Bacillus cereus AH676]
 gi|229111881|ref|ZP_04241427.1| Exonuclease RecJ [Bacillus cereus Rock1-15]
 gi|229129689|ref|ZP_04258657.1| Exonuclease RecJ [Bacillus cereus BDRD-Cer4]
 gi|229146980|ref|ZP_04275342.1| Exonuclease RecJ [Bacillus cereus BDRD-ST24]
 gi|296504901|ref|YP_003666601.1| single-stranded-DNA-specific exonuclease recJ [Bacillus
           thuringiensis BMB171]
 gi|228636477|gb|EEK92945.1| Exonuclease RecJ [Bacillus cereus BDRD-ST24]
 gi|228653806|gb|EEL09676.1| Exonuclease RecJ [Bacillus cereus BDRD-Cer4]
 gi|228671637|gb|EEL26935.1| Exonuclease RecJ [Bacillus cereus Rock1-15]
 gi|228723221|gb|EEL74595.1| Exonuclease RecJ [Bacillus cereus AH676]
 gi|228798988|gb|EEM45961.1| Exonuclease RecJ [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296325953|gb|ADH08881.1| single-stranded-DNA-specific exonuclease recJ [Bacillus
           thuringiensis BMB171]
          Length = 779

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|227529069|ref|ZP_03959118.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           vaginalis ATCC 49540]
 gi|227351081|gb|EEJ41372.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           vaginalis ATCC 49540]
          Length = 774

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/579 (31%), Positives = 287/579 (49%), Gaps = 26/579 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           + W   +          ++Q+  I  ++AR+L  R ++  + A  F+ PS++ +  DP  
Sbjct: 6   YDWQ-RIAAPDKQIVEQLSQELGINPVIARLLAERGITTPEEAHSFIQPSMQAVH-DPHQ 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +A+   E+I ++GDYD DG  S ALM   L     N N Y+P+R  DG
Sbjct: 64  LHDMDKALERIQEAVAAGEQITVYGDYDADGITSTALMYEVLQDVGANVNYYVPNRFRDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN    +K I++G +LIITVD G +    +     QGIDVIV DHH++  +   AYA+
Sbjct: 124 YGPNAEAYQKIIDQGTKLIITVDNGVSGKAVIDPVVKQGIDVIVTDHHEMPEDLPDAYAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P           L   GV F V   +     +            LLDLVA+  + DVV
Sbjct: 184 VHPRYPGSNYPFADLSGVGVAFKVAWALLDEFPE-----------ELLDLVAIGEIADVV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
            +   NR  ++ G+   R+   PGL AL++   IS   +T +++G++I P +NA GRI +
Sbjct: 233 SVSDENRPLIMMGIQELRQGMRPGLHALVKEAGISEQSLTDQDIGFVIAPRLNALGRIAD 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N G  LL + D      LA  ++  N  R+ + + ++ +A+ +V       Q   V++V
Sbjct: 293 ANEGVELLTTLDEDRATKLAKAVEQANSKRQELVNEIMGEAQQQVDRLP---QDQPVLLV 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEG 432
            G  WH G++G++A+RL ++ G+P+   S  +D K   GSGRS++GF++    +      
Sbjct: 350 VGHDWHQGVLGIVASRLMDQTGKPTIVASTNDDQKIAKGSGRSVDGFNL--FAALDGHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++   GGH  A GL+ E  N  +L +     A N           KI   ++ + V++ L
Sbjct: 408 LMTSFGGHPAACGLSFETENSEKLRNVLLHEAENQHFDGQKKQPLKIAASISPAEVSMQL 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
            D L S  P+G GN  PVF     ++ SI  +     HL+     Q S+ +  IAF    
Sbjct: 468 YDQLVSLSPFGPGNEQPVFELQPDQINSIVTMGKDNSHLKFMVGDQQSQ-VTVIAFG--K 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L   L  +   ++ +   + +N WRG +  QL + D 
Sbjct: 525 GKLAAVLRAAMANQIKLAVKISINEWRGKRTVQLMLEDI 563


>gi|218231207|ref|YP_002369218.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           B4264]
 gi|218159164|gb|ACK59156.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           B4264]
          Length = 779

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQNEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|315634623|ref|ZP_07889907.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           segnis ATCC 33393]
 gi|315476571|gb|EFU67319.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter
           segnis ATCC 33393]
          Length = 577

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/568 (29%), Positives = 277/568 (48%), Gaps = 22/568 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  +R++        L+ ++  +   P +++  D A   +++A    +KI+I G
Sbjct: 19  DPLLDRLYRSRHIKNANQ---LDRTLSAMHH-PNLMSGMDTAVTFLLEAYQKQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      N    +P+R   GYG + ++ ++ +  G +L++TVD 
Sbjct: 75  DFDADGATSTALAVLALRQLGFANVTYLVPNRFEQGYGLSVAVAQEALALGVELLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   QG  VIV DHH        A A+VNPN +       HL   GV F +
Sbjct: 135 GVSSHEGVAFLKAQGGKVIVTDHHLPPETLPNADAIVNPNLVHCGFPSKHLAGVGVTFYL 194

Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR  V +G+  +   + 
Sbjct: 195 MLALRAKFRELGLFDTKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGIARIRAERC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++AL E      +   A +LG+ IGP +NA GR+   ++G  LL++++ +    LA+
Sbjct: 255 RCGIRALAEVAKRDVTRFVAADLGFSIGPRLNAAGRLDNMSVGVELLLAENMETARALAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-----DIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LD LNQ R+ +E  M  +A              +      IV+    WH G++G+LA+R
Sbjct: 315 ELDGLNQARKEIEQGMKLEALTICQNLFANTTALETDIPHSIVLYQSDWHQGVLGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLT 447
           +KE+F RP  A + ++ G   GS RSI G  I  ++     +    ++K GGHAMAAGL+
Sbjct: 375 IKEQFHRPVIAFAQDQAGMLKGSARSIPGLHIRDVLERVYSQHPDLILKFGGHAMAAGLS 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F      F +    ++           DG LNA+ +N+A  + L   GP+G   P
Sbjct: 435 IQESRFDDFRQIFNQTVSELLAEDQLQGTIWTDGELNANLLNLATAETLRQGGPWGQAFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL+M  E +     L AIAF +      +  +    K   
Sbjct: 495 EPLFDGE-FKILQQRLVGEKHLKMMVEPKLGGPLLDAIAFNIDTRYYPDLSI----KTAR 549

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPVEG 594
               L +N +RG++  QL V    P+E 
Sbjct: 550 FAYKLDINEFRGNRDLQLLVDYIEPLES 577


>gi|229152612|ref|ZP_04280801.1| Exonuclease RecJ [Bacillus cereus m1550]
 gi|228630873|gb|EEK87513.1| Exonuclease RecJ [Bacillus cereus m1550]
          Length = 779

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  ++      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAMLTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|186896596|ref|YP_001873708.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis PB1/+]
 gi|186699622|gb|ACC90251.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia
           pseudotuberculosis PB1/+]
          Length = 577

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 277/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I 
Sbjct: 22  LPPLLRRLYASRGVKDAQE---LERGVKGLLA-WQKLDGIDAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LN+ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F       + A     V   DG LN + +++   ++L   GP+G   P 
Sbjct: 438 EEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V    P
Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576


>gi|170023171|ref|YP_001719676.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis YPIII]
 gi|169749705|gb|ACA67223.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia
           pseudotuberculosis YPIII]
          Length = 577

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 277/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L   ++ L+     L   D     + QA+ +  +I+I 
Sbjct: 22  LPPLLRRLYASRGVKDAQE---LERGVKGLLA-WQKLDGIDAGVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LN+ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F       + A     V   DG LN + +++   ++L   GP+G   P 
Sbjct: 438 EEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF V  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V    P
Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576


>gi|228987660|ref|ZP_04147774.1| Exonuclease RecJ [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772120|gb|EEM20572.1| Exonuclease RecJ [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 779

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|197250349|ref|YP_002147954.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197214052|gb|ACH51449.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 577

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|161581988|ref|NP_232047.2| ssDNA exonuclease RecJ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
          Length = 579

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 18  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 134 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 253

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 374 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 434 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 577


>gi|332160508|ref|YP_004297085.1| ssDNA exonuclease RecJ [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664738|gb|ADZ41382.1| ssDNA exonuclease RecJ [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863447|emb|CBX73566.1| single-stranded-DNA-specific exonuclease recJ [Yersinia
           enterocolitica W22703]
          Length = 577

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 275/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+  +R V        L   ++ L+     L     +   + QA+ +  +I+I 
Sbjct: 22  LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIGASVTLLQQALADRRRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A   GI V+V DHH        A A++NPN          L   GV F 
Sbjct: 138 NGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCNFLSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRDSGWFEQRTLAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LNQ RR +E  M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMFHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVTGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       + A     V   DG LN + +++   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGNELSLETAELLRDGGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576


>gi|229098883|ref|ZP_04229819.1| Exonuclease RecJ [Bacillus cereus Rock3-29]
 gi|228684556|gb|EEL38498.1| Exonuclease RecJ [Bacillus cereus Rock3-29]
          Length = 773

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 182/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      E   R   + +K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYNE--ERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTVGRVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V  +    +   V+V+ 
Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L       A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  N +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|153830652|ref|ZP_01983319.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           623-39]
 gi|148873861|gb|EDL71996.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           623-39]
          Length = 584

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++IITV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIITV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEAQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582


>gi|262042533|ref|ZP_06015690.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040093|gb|EEW41207.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 577

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 182/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    LT  +KA   +  A      I++
Sbjct: 21  DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHDAFQKGLHIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDARGIPAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +       S + +   +WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSADTLPSGLAMYHPQWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L A+ +++ +  ML  AGP+G   P
Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAAAEMSMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVDGGPLLDGIAFNVDTSIWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576


>gi|254226631|ref|ZP_04920211.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V51]
 gi|125620850|gb|EAZ49204.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V51]
          Length = 579

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 18  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 134 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 253

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 374 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 434 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 577


>gi|229158024|ref|ZP_04286095.1| Exonuclease RecJ [Bacillus cereus ATCC 4342]
 gi|228625477|gb|EEK82233.1| Exonuclease RecJ [Bacillus cereus ATCC 4342]
          Length = 779

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPSPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|153826878|ref|ZP_01979545.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MZO-2]
 gi|149739294|gb|EDM53550.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MZO-2]
          Length = 584

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDSLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582


>gi|89092001|ref|ZP_01164956.1| RecJ exonuclease [Oceanospirillum sp. MED92]
 gi|89083736|gb|EAR62953.1| RecJ exonuclease [Oceanospirillum sp. MED92]
          Length = 577

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/564 (33%), Positives = 281/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++AR+  +R ++     D L   +  L+PD   L   D+A  R+V A+   E ++I 
Sbjct: 22  VNPVLARIYASRGITD---LDSLGRKLSELLPD-QGLAGIDQAVNRLVAAVTQQESVLIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S ++ +  L    ++     +P+R   GYG +P ++ +       LI+TVD
Sbjct: 78  GDFDCDGATSTSVAVLALRMMGLDDVRYLVPNRFEYGYGLSPEIVAEAKKLSPGLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +  A   GIDVIV DHH   SE   A A+VNPN+          C  GV+F 
Sbjct: 138 NGISSIEGVAAANQAGIDVIVTDHHLAGSELPEACAIVNPNQPHCGFVAKSTCGVGVIFY 197

Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           V++ + R L+  N          +L SLLDLVAL TV DVVPL   NR +V +GL   + 
Sbjct: 198 VMIALRRALQNQNWFERIARPAPNLASLLDLVALGTVADVVPLEQNNRVFVYQGLQRIKA 257

Query: 274 Q-GNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PGLKALIE        T   +LG+ I P +NA GR+ + ++G   L++D +++ + 
Sbjct: 258 GYCRPGLKALIEVSGRQQHKTTSSDLGFAIAPRLNAAGRLEDMSIGIECLLTDSAEKAKE 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQA-EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ L+ LNQ R+ +E  M +QA E     Q D+ Q    + +  + WH G++G+LA+R+
Sbjct: 318 LAITLNELNQERKGIEQEMQQQALELLARLQLDEQQLPFGLSLYEEEWHQGVIGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDI--GKMVSFAVEEGILVKGGGHAMAAGLTV 448
           KE+  RP  A +  ++G+  GS RSI GF I  G     A    +L K GGHAMAAGLT+
Sbjct: 378 KERTHRPVIAFAQGDEGELKGSARSISGFHIRDGLDAIAARYPQLLKKFGGHAMAAGLTI 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              +       F +     +           DG+L +  + + L +ML  AGP+G   P 
Sbjct: 438 RVSDLELFQSAFDEEVKRQLSEQDLEQQVLTDGLLTSEEMTLELAEMLRDAGPWGHQFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F      L   RVV   HL+M   E      + AI F        +        ++ V
Sbjct: 498 PLFEGQ-FSLLQQRVVGQRHLKMVLMEPSSGLAIDAIQFNADMGLWPD----ESRTQVRV 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG +  Q+ V    P
Sbjct: 553 VYKLDVNEFRGQRNVQMLVEHLLP 576


>gi|297581041|ref|ZP_06942966.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           RC385]
 gi|297534867|gb|EFH73703.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           RC385]
          Length = 584

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ +NR VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLNRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E+ NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEKQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582


>gi|315224629|ref|ZP_07866454.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           ochracea F0287]
 gi|314945414|gb|EFS97438.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           ochracea F0287]
          Length = 564

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/580 (27%), Positives = 281/580 (48%), Gaps = 23/580 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + W              + Q+  I + +A +L  R V+    AKDF  P++  L  +P +
Sbjct: 3   YTWNFKPLPPQ-AIVATLQQELNISEPLAILLAQRGVTTFQQAKDFFRPTLSQLH-NPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +    +A  R+ +A+ ++E I+I+GDYDVDG ++V+LM  +LS+ +   + Y+PDR  +G
Sbjct: 61  MKGMKEAVARLDRALKSNETILIYGDYDVDGTSAVSLMEHYLSNFTSKLHTYVPDRYTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++    +G  LII +DCG  + D ++YA  + ID I+ DHH+   +   A A+
Sbjct: 121 YGISFQGIDYAEAQGCTLIIALDCGIKAIDKVEYAKEKAIDFIIADHHRPSEQVPDAIAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P + D       LC  G+ F +    +  L          +L+ LLDLVA+AT  D+V
Sbjct: 181 LDPQQADCPYPYKELCGCGLGFKLAQAYHEYL-----QRPFSELIPLLDLVAVATAADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL V     + G+KAL         IT  ++ +   P +NA GRI   
Sbjct: 236 PMDGENRCLTYFGLEVLNNNPSAGVKALFGEHQGK--ITITDVVFKAAPRVNAAGRIEHG 293

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL   D ++  + A +++ LN +R+ ++S++  +A  ++  + +  Q+    VV 
Sbjct: 294 KYAVALLTETDEEQAVLKAKEIEALNTHRKELDSSIATEALNQI--EANGEQEHYTSVVF 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+RL E + RP+   +     K   S RS++GFDI + +    E   L
Sbjct: 352 NEEWHKGVIGIVASRLIEHYYRPTVVFTKSG-NKYAASARSVQGFDIYEALEQCSEY--L 408

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAGLT+    +    + F++     + + +  P   ID  L  S +   L +
Sbjct: 409 EQFGGHKYAAGLTLRPEQYPLFKNAFEEVVKQTIDSSLRIPKLFIDTALPLSKLTQKLYN 468

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDS-ETLQAIAFRVYG 550
           +L+   P+G  N  P+F   +       + +     HL++T +   +     A+ F +  
Sbjct: 469 VLKQFEPFGPLNLPPLFYAESVIDTGFAKRIGKDEEHLKLTLKEVGTISYYDAVGFGLAH 528

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +  + + G+   +   +  N W G    QL++ D  
Sbjct: 529 ----KLPIVTSGRPFSIVYSIEENQWNGRVSLQLQIRDIK 564


>gi|311693657|gb|ADP96530.1| bacterial RecJ exonuclease [marine bacterium HP15]
          Length = 577

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 288/566 (50%), Gaps = 21/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ D    +   +++ L   PL L   D+A   + +AI   +++++
Sbjct: 21  NLPPLLRRLYAARGVTSDEQLSY---TLKHL-ASPLSLRGIDRAVELLAEAIDQQQRVLV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN--EGAQLII 154
            GD+D DGA S A+ M  LS   +   +  +P R  DGYG  P ++E+  +  +   L++
Sbjct: 77  LGDFDADGATSTAVAMLGLSMLGLQSIDFRVPSRFADGYGLTPGIIERLRDEGQLPDLMV 136

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G ++ + ++ A   G+ V+V DHH    E   A A+VNPN+        +    GV
Sbjct: 137 TVDNGISAVEGVRAAKELGVKVMVTDHHLAGEELPDADAIVNPNQPGCPFLSKNAAGVGV 196

Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +F VL  + + LR+ N++P    +L  LLDLVAL TV DVVPL   NR +V +GL   R+
Sbjct: 197 MFYVLTALRKQLRETNRLPDPEPNLGCLLDLVALGTVADVVPLDHNNRIFVEQGLRRIRQ 256

Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG+ AL+E        I++ +LG+++GP +NA GR+ + ++G   L++D   E   
Sbjct: 257 GEARPGILALLEVAGRDHTAISSTDLGFVVGPRLNAAGRLDDMSIGIACLLADSPDEARR 316

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390
           LA +LD  N+ RR +E  M  QA+  + +   D+        +    WH G++G+LAAR+
Sbjct: 317 LARELDTFNRERRTIEKDMKAQAQDLLSSMSLDLDGLPWGLALFDTDWHQGVIGILAARI 376

Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +E+  RP+ A + +E+G    GS RSI G  I  +++       GI+ K GGHAMAAG+T
Sbjct: 377 REQTHRPTIAFAPDENGVDIKGSARSIPGLHIRDVLAVVDSRHPGIMKKFGGHAMAAGMT 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           + R +     + F +   + + A         DG L AS +++    +L+ AGP+G   P
Sbjct: 437 LARDDLDAFSEAFDRAVRDTLSAEDLEAAITTDGPLGASELSLDTAALLKRAGPWGQHFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     ++ S R+V   HL++  +  +    +  IAF       G  +         
Sbjct: 497 EPLFDGE-FRVVSQRIVGENHLKLVLQPVEGGGIIDGIAFNT-----GPEVPDYTRTGAR 550

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           V      N +RG    QL V    P+
Sbjct: 551 VVYKPDANTFRGRTNLQLLVDYLEPL 576


>gi|290968823|ref|ZP_06560360.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781119|gb|EFD93710.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 658

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 186/582 (31%), Positives = 295/582 (50%), Gaps = 25/582 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW    G         +T++  I  +++++LVNR ++  +  + FL  +I     DP  
Sbjct: 3   KRWQLQAGAPTAEA--QLTKELHISPVLSKMLVNRGITTVEEGRHFLRDTIADS-ADPYR 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   + A  R+ +AI   E+I+I+GDYDVDG  + A+M   L         YIP+R  +G
Sbjct: 60  MKGLEAAVLRLDKAIDEQERIVIYGDYDVDGITATAIMCAVLRDLGAAPEFYIPERQSEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +E     G Q+++TVDCG  S+D +       +D+I+ DHH+  S+  PAYA+
Sbjct: 120 YGLHQEALEYLQQIGTQVLVTVDCGIASHDLVARFNTA-MDIIITDHHEPPSKVPPAYAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  ++D       L  AGV +L+   +++  R       +  L +  ++ AL T+ D+V
Sbjct: 179 LDAKQVDCSYPYKELAGAGVAYLLCRALWQKRR-------HTPLENYAEIAALGTIADLV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL G NRA V  GL   R+  N GL+AL +   I    ITA  + Y I P +NA GRI  
Sbjct: 232 PLTGENRALVRAGLQRMRQGANMGLQALFQEARIEAEKITAGRIAYTIAPRLNAAGRISH 291

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G +LL+S D +E   +A +L  LNQ R+ +E  + + A  ++  Q    ++  V++ 
Sbjct: 292 AKQGVQLLLSHDREETRTIAARLTALNQERQRLEQDIAQLAATQISAQGR--EKDGVLIA 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WHPG++G+ A+RL EKF RP+  IS +  G G GS RSI GF++ + + FA  E +
Sbjct: 350 YGEDWHPGVIGIAASRLVEKFYRPALVISIQN-GIGKGSCRSIPGFNMYQALQFA--EDL 406

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGH MAAG +V   N   L     ++A   +      P   ID  L+   +++ LI
Sbjct: 407 LLQYGGHTMAAGFSVRVENIEALRRRLCEYAAQQLCPDDYIPRLAIDMQLDIQDISLELI 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGT 551
             L    PYG GN  P+F+     LQ I+ +     HL++  ++     L AI + +   
Sbjct: 467 QELSCLEPYGMGNSRPIFSLSRAVLQHIQPIGAGNRHLRLVIDTPQ-RELTAIGWSMSEA 525

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                     G ++ +   L  N +RG    QL V D    E
Sbjct: 526 ARSLL----DGDQVGLAFQLERNEFRGQVMPQLVVQDIHAPE 563


>gi|49481496|ref|YP_038459.1| single-stranded-DNA-specific exonuclease [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49333052|gb|AAT63698.1| single-stranded-DNA-specific exonuclease [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 779

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW          R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L     +   YIP+R  +GY
Sbjct: 64  EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +    + A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+S+D +E + LA ++D LN+ R+ +   + E+A A+V T     +   V+V+ 
Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +  +   +   GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|227551359|ref|ZP_03981408.1| recombination protein J [Enterococcus faecium TX1330]
 gi|227179478|gb|EEI60450.1| recombination protein J [Enterococcus faecium TX1330]
          Length = 765

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/581 (29%), Positives = 276/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFNWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  SV +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSVTVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I +G QLIITVD G    DA+ YA   G+DVI+ DHH++  +   AYA
Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   I      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + E+A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRS+E  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L   P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   ++ +++ +     HL+     + S+ L A+AF    
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               E L+ +    + V G L +N W G K+ QL V D + 
Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558


>gi|289675179|ref|ZP_06496069.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. syringae FF5]
          Length = 570

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 286/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              NF    + F +     +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENFPAFAEAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVPIAP 570


>gi|307129432|ref|YP_003881448.1| ssDNA exonuclease, 5' --> 3'-specific [Dickeya dadantii 3937]
 gi|313104200|sp|P39693|RECJ_DICD3 RecName: Full=Single-stranded-DNA-specific exonuclease recJ
 gi|306526961|gb|ADM96891.1| ssDNA exonuclease, 5' --> 3'-specific [Dickeya dadantii 3937]
          Length = 576

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 183/566 (32%), Positives = 279/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++P ++ R+   R V        L  S+R L+ D  +L    +A   + QA+ ++ +I+I
Sbjct: 20  SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGITQAVEVLRQALADNRRIVI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R  DGYG +P ++ +   +GA+LI+TV
Sbjct: 76  VGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A  +GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 136 DNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  + +GL   R
Sbjct: 196 YLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIR 255

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N   + + A +LG+ +GP +NA GR+ + ++G  LL+ +D  +  
Sbjct: 256 AGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           MLA  LD LNQ+RR +E+ M  +A               +   +   +WH G+VG+LA+R
Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVGILASR 375

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLS 435

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +    F      F       + A     V   DG L +  + +   +ML  AGP+G   P
Sbjct: 436 LVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPWGQAFP 495

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P F     +L   R+V   HL++  E       L  IAF V      +    S  + + 
Sbjct: 496 EPTFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD----SSVREVE 550

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L VN +RG +  QL +    P+
Sbjct: 551 LAYKLDVNEFRGKRSVQLLIEHLWPL 576


>gi|330504616|ref|YP_004381485.1| exonuclease RecJ [Pseudomonas mendocina NK-01]
 gi|328918902|gb|AEB59733.1| exonuclease RecJ [Pseudomonas mendocina NK-01]
          Length = 569

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V        L+  +  L+P    L   D A   +V+A+   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSAEE---LDKGLARLIPY-QQLKGIDAAVELLVEALVQCQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++   +     L++TV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALERKPDLLLTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    E   A A+VNPN+         +   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCTFPSKAMAGVGVMF 192

Query: 217 LVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR+          +L  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLLALRARLRETGWFASRVEPNLGELLDLVALGSVADVVPLDANNRILVHQGLARIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +
Sbjct: 253 RARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALARDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++     D      + +    WH G++G+LA+RLKE
Sbjct: 313 AVQLDQLNQDRKAIEQGMQREALAQLKDLSLD-DMPFGLCLFEPDWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ G  I   +    A   G++ K GGHAMAAGL++ +
Sbjct: 372 RYHRPAIAFADAGEGMLKGSARSVPGLHIRDALDAVAARHPGLISKFGGHAMAAGLSLPQ 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NFG     F       +     T     DG L+A+  ++ L   L +AGP+G   P P+
Sbjct: 432 ANFGAFAAAFDAEVRRQLSEDDLTGRLLSDGQLDATEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     ++   R+V   HL++  +++  S  L  IAF +      E       +   +  
Sbjct: 492 FHG-VFQIVGQRIVGERHLKLVLKTECGSVQLDGIAFNIDR----EVWPNPTLRWAELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG++  QL V   +P
Sbjct: 547 KLDLNEFRGNETVQLMVAHIAP 568


>gi|229514043|ref|ZP_04403505.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TMA
           21]
 gi|229349224|gb|EEO14181.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TMA
           21]
          Length = 584

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 280/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +   +   +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAVLKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582


>gi|257896024|ref|ZP_05675677.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           Com12]
 gi|257832589|gb|EEV59010.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           Com12]
          Length = 765

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 275/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFNWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I +G QLIITVD G    DA+ YA   G+DVI+ DHH++  +   AYA
Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   I      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + E+A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRS+E  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L   P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   ++ +++ +     HL+     + S+ L A+AF    
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               E L+ +    + V G L +N W G K+ QL V D + 
Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558


>gi|77359474|ref|YP_339049.1| single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874385|emb|CAI85606.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 573

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/563 (31%), Positives = 268/563 (47%), Gaps = 17/563 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   RNVS       LN S   L  D  +  D DKA   +++A++    I+I
Sbjct: 19  HLHPVIKQIYATRNVSHADE---LNNSAATLH-DFKLFKDMDKACDLLIEALHAQSHILI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S A +M+ L+     + +  +PDR   GYG +P+L  + +     L+ITV
Sbjct: 75  VGDFDADGATSTATLMQGLAMFGFAHLDYLVPDRFSLGYGLSPALAAQIVQLKPDLVITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +    +       I V+V DHH        A A+VNPNR D       +   GV F
Sbjct: 135 DNGISCIAGIDIVKAANIKVLVTDHHLQGETLPNADAIVNPNRHDCSFPSKSIAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            +L+ +   LR+ N        +L  LLD+VAL TV DVV L   NR  V +GL   R  
Sbjct: 195 YLLIALRSTLREQNHFAQQPMPNLADLLDIVALGTVADVVALDANNRTLVHQGLARIRSG 254

Query: 275 G-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG+ ALIE  N + S ++A + G+ + P +NA GR+ + +LG   L+S D  +   +
Sbjct: 255 KTRPGITALIEVANRNASRLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSTDINQARRI 314

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD LN  RR +E  M  +A+A +     +       I +  + WH G++G+LA RLK
Sbjct: 315 ASELDSLNFARREIEQGMQHEAQAVLDKLAFNDDNIPDAICLYQEDWHQGVIGILAGRLK 374

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           EK+ RP+   +  E+G+  GS RSIEG  I  ++      +  ++ K GGHAMAAGL++ 
Sbjct: 375 EKYHRPTVIFAGGENGEIKGSCRSIEGLHIRDLLEGLSTADPHLISKFGGHAMAAGLSIN 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F      F       +       +   DG L      +     L+ AGP+G   P P
Sbjct: 435 EQQFSEFKHAFDTAVSAQLSEESKRCIVFTDGELPNECFTMDFAQQLKQAGPWGQQFPEP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           VF     +L   R+V   HL++  + Q    + AIAF +      +    +  + +    
Sbjct: 495 VFEHT-FELIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPD----NNAQFVKAAY 549

Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592
            L +N +RG    QL + +    
Sbjct: 550 QLDINEFRGKFTLQLIIRELEKA 572


>gi|229592386|ref|YP_002874505.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens
           SBW25]
 gi|229364252|emb|CAY51960.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens
           SBW25]
          Length = 569

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 276/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   D A   +V A+   ++I+I
Sbjct: 17  DLPPLLTRLYAARGVQSE---AELDKSLARLIPY-QRLKGIDAAVDLLVTALEQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  +    L      + +  +P+R   GYG  P ++   +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGWYEHKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG+KA++E      + IT+ +LG+++GP +NA GR+ + +LG   L++ D      +
Sbjct: 253 RARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD +NQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+R+KE
Sbjct: 313 AAQLDGMNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDPEWHQGVIGILASRMKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG   GSGRS+ GF I   ++        ++ K GGHAMAAGLT+  
Sbjct: 372 RYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 ENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF V      E       + + +  
Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L VN +RG++  QL +    P
Sbjct: 547 KLDVNEFRGNETVQLMIAHIEP 568


>gi|153822235|ref|ZP_01974902.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33]
 gi|229512281|ref|ZP_04401760.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33]
 gi|229519417|ref|ZP_04408860.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC9]
 gi|229607029|ref|YP_002877677.1| ssDNA exonuclease RecJ [Vibrio cholerae MJ-1236]
 gi|254849540|ref|ZP_05238890.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MO10]
 gi|9656991|gb|AAF95560.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126520245|gb|EAZ77468.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33]
 gi|229344106|gb|EEO09081.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC9]
 gi|229352246|gb|EEO17187.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33]
 gi|229369684|gb|ACQ60107.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MJ-1236]
 gi|254845245|gb|EET23659.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MO10]
          Length = 584

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582


>gi|104783218|ref|YP_609716.1| ss DNA specific exonuclease RecJ [Pseudomonas entomophila L48]
 gi|95112205|emb|CAK16932.1| ss DNA specific exonuclease RecJ [Pseudomonas entomophila L48]
          Length = 569

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/561 (31%), Positives = 279/561 (49%), Gaps = 18/561 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+  +  L+P    L   D A   +V+A+   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---TELDKGLARLLP-FQQLKGIDAAVDLLVEALDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P +++  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVQVALERQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    +   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLRVLVTDHHLPGEQLPDADAIVNPNQPGCEFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D+     +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALALDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+RLKE
Sbjct: 313 AQELDGLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGEGMLKGSARSVAGFHIRDALDAVAARYPSLISKFGGHAMAAGLSLPA 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L +AGP+G   P P+
Sbjct: 432 DNFPAFAEAFDAEVRRQLREEDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L S RVV   HL++  +S+    TL  IAF V      E       + + +  
Sbjct: 492 FHG-VFQLVSQRVVGERHLKVVLKSECGAVTLDGIAFGVDR----EVWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L VN +RG++  QL +    
Sbjct: 547 KLDVNEFRGNESVQLMIAHME 567


>gi|259909553|ref|YP_002649909.1| ssDNA exonuclease RecJ [Erwinia pyrifoliae Ep1/96]
 gi|224965175|emb|CAX56707.1| Single-stranded-DNA-specific exonuclease [Erwinia pyrifoliae
           Ep1/96]
 gi|283479630|emb|CAY75546.1| recJ [Erwinia pyrifoliae DSM 12163]
          Length = 572

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/560 (34%), Positives = 279/560 (49%), Gaps = 17/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  +R VS       L    + L P    L+  +KA   +  A+ +++ IMI
Sbjct: 21  DLNPLLRRLYAHRGVS---CASELERGAKNLHP-FQSLSGIEKAVTLLQHALADNQCIMI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALAVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A  +GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSLAGVALAHQKGIAVLVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275
            +++ +   LR      L  +L  LLDLVAL TV DVVPL   NR  V +GL   R  + 
Sbjct: 197 YLMLALRARLRDSGVNGL-PNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +  MLA 
Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLGQARMLAS 315

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A A      +  +   + I +    WH G+VG+LA+RLKE+
Sbjct: 316 ELDALNQTRKEIEQGMQSEALALCNRLENASEALPLGIAMYHPEWHQGVVGILASRLKER 375

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
           F RP  A +   DG   GSGRSI G  +  ++        G++ K GGHAMAAGL++E  
Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTRHPGLIAKFGGHAMAAGLSLEEA 435

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F     + + A     V   DG L A  + +   ++L  AGP+G   P P F
Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLREAGPWGQAFPEPTF 495

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                +L   R+V   HL++  E       L  IAF V      +       K++ +   
Sbjct: 496 DGK-FRLLQQRLVGERHLKVMIEPIGGGPLLDGIAFNVDTALWPD----PSVKQVELAYR 550

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L VN +RG++  QL +    
Sbjct: 551 LDVNEFRGTRSVQLIIDHLW 570


>gi|268318109|ref|YP_003291828.1| single-stranded-DNA-specific exonuclease RecJ [Rhodothermus marinus
           DSM 4252]
 gi|262335643|gb|ACY49440.1| single-stranded-DNA-specific exonuclease RecJ [Rhodothermus marinus
           DSM 4252]
          Length = 587

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/583 (28%), Positives = 286/583 (49%), Gaps = 17/583 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           +RWV     +    A  +     +P+ +ARVLV R ++  + A+ F  P +  L  DP +
Sbjct: 4   YRWVRRPLPDPSAVATLMAAARYLPEPLARVLVARGITTVEAARAFFRPELDQLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D + AARR+ +AI + E+++++GDYDVDG  + AL+  FL    V    ++PDR   G
Sbjct: 63  MADMEAAARRLARAIEDREQVLVYGDYDVDGTTATALVTSFLKERGVPVRYFVPDRFRHG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG     +E+ +  G +L+I +DCG T+ +   YA  +G+D+I+ DHH   +    A A+
Sbjct: 123 YGLTQKALEEALEAGTRLLIALDCGITAAEEAAYARARGVDLIICDHHTAGATLPEAVAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P R D       L    V F ++    ++L +  +          LDLVAL+T  D+V
Sbjct: 183 LDPKRPDCPYPFPELSGCAVAFKLVQATLQVLGESPEAA-----YRYLDLVALSTAADIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
           PL G NR  + +GL   RR   PGL+ L  R          + + + + P INA GR+G+
Sbjct: 238 PLTGENRILMAEGLRHLRRSTRPGLQQLAARARWPLETLTMHGIVFGLAPRINAAGRLGD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N    LL+++D+   + LA +LD  N+ R+ ++   LE+A  +   Q         +V+
Sbjct: 298 ANRAVALLLAEDAATADKLAAELDAANRERQQIDRRTLEEAIVQAERQITARDDRHALVL 357

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+R+ E+F RP+  +   +     GS RSI G +I + +     E +
Sbjct: 358 YHPDWHLGVIGIVASRIVERFYRPTILLCAVDS-ILKGSARSIAGINIYEALRDC--EDL 414

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGH  AAGL +E        + F +     +   +  P  +ID +L+   ++    
Sbjct: 415 LLQFGGHTYAAGLALEENRLEAFRERFNEAVGARMTPELLVPRLEIDALLDLHTLDERFW 474

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQ---DSETLQAIAFR 547
            +L+  GP+G  N  P+F   + ++    ++V     HL+     +   D    + I F 
Sbjct: 475 RLLQRFGPHGPENEEPLFMARDLEVVGEPKLVGGEGKHLKFYVRQRAHPDDPPCEVIGFG 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      +  G+ + +   L  N W+G  R QLR+ D  
Sbjct: 535 KERLLPAVQHSRRMGQPLALAFTLQENTWQGQTRLQLRLRDLK 577


>gi|302038557|ref|YP_003798879.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Nitrospira defluvii]
 gi|300606621|emb|CBK42954.1| Single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Nitrospira defluvii]
          Length = 568

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/576 (32%), Positives = 295/576 (51%), Gaps = 18/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
             WV             ++++ +I  + A VL+ R V+  D A  +++ S++  + DP +
Sbjct: 4   KLWVFRA--ADRALQHTLSKQLSISPVTASVLLARGVTTPDEATRWMS-SVQGGLHDPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D + A  R+ QA+   E++  +GDYDVDG ++ +L + F      NA  YIP R+ +G
Sbjct: 61  LPDMESAVERLHQALARQERVCFYGDYDVDGVSATSLYLSFYQGLGGNACGYIPHRVREG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +   EG  L++T DCG+TS+  +  A   G+DVIV DHHQ  +    A A+
Sbjct: 121 YGLNEGAVRRLAEEGISLLVTSDCGTTSHHEIAVARELGVDVIVTDHHQTDATMPAALAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP+R D +     LC+AG+ + V+    +     +  P +      LDLVALATV D+V
Sbjct: 181 LNPHRRDAIYPFKGLCSAGLAYKVVSAYQQRYGSGDVEPDSC-----LDLVALATVADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL   NR  V +GL    R    G++AL +   I+   T+E +G+ +GP +NA GR+  +
Sbjct: 236 PLQDENRILVREGLTHITRGARAGIRALKQVAGIAKACTSETIGFRLGPRLNAAGRLDHA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            L  RLL ++  QE   +A +L+ LN+ R+ +E  +  +A   +       + A+ IV+ 
Sbjct: 296 MLCVRLLTTESDQEAMQIAEQLEQLNRQRQQIEEGITREAATYLNQ----DEPAAAIVLG 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G+VG++AARL ++F RPS  I+ +  G+G GS R++EGF++ + +S    + +L
Sbjct: 352 SRDWHLGVVGIVAARLVDRFHRPSIVIAIDGQGRGKGSARTVEGFNLYQGLSEC--KDLL 409

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGH  AAGLT++          F + A        T P   +D  +  + VN  LI 
Sbjct: 410 EAYGGHPSAAGLTLKEARLEEFRRRFCEVAAQWAGGARTVPTLHVDAEVKLTDVNFDLIQ 469

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            LES  P+GAGNP P  A     +   RVV   HL++      S    +I FR+      
Sbjct: 470 ELESLHPFGAGNPEPTLAVRGLDVVDARVVGEKHLKLRVRQGRSFIFDSIGFRMGSF--- 526

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           E L     + + +      N+W G  R QLR+    
Sbjct: 527 EELGLRANRPVDLAFSPERNHWNGYDRVQLRIKALR 562


>gi|21673199|ref|NP_661264.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium tepidum
           TLS]
 gi|21646280|gb|AAM71606.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium tepidum
           TLS]
          Length = 568

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 272/578 (47%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +RW  L  +       A+++   +   +A  LVNR +S  + A+ F  PS+  + P P +
Sbjct: 4   YRWTCLEPEP--TLVQALSEAINVSSPIAAALVNRGISSFEEARRFFRPSLDEI-PSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D  +A  R+ +AI+  EKIM++GDYDVDG +  A++  FL         YI DR  +G
Sbjct: 61  FNDMKRAVGRLSKAIFGGEKIMVYGDYDVDGTSGTAMLSLFLREMGAEVCHYINDRFTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + +     +G  LI+TVDCG  + D +Q    +G+DVIV DHH+       A A+
Sbjct: 121 YGLSEAGIAWAFEQGVSLIVTVDCGIRAIDEVQACVGKGVDVIVCDHHEAGELPA-ACAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV F ++  +     +           + LD VA+AT  D+V
Sbjct: 180 LNPKVEGCGYPFRELCGCGVAFKLMQAMVEARGES-----QDRWRNYLDFVAVATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NRAY+ +GL + RR      +A+   + ++ +  +  N+ Y I P INA GR+  
Sbjct: 235 SLQGENRAYLREGLELMRRSPRVSFQAMAANMKLNLAEFSMMNITYGIAPRINAAGRMES 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +    + L+S D  E  + A +L+ LN  RR +++ +  +AE  V   C      S IV+
Sbjct: 295 AGAAMQWLLSSDESEARLRAAELEALNVRRRQIDAEITARAETMVAGHCASF--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A++L +K+  P+  +     G   GS RS++  +I  ++        
Sbjct: 353 YDEAWHLGVLGIVASKLLDKYQLPTVVMGRMN-GLIKGSVRSVDQLNIYDVLHEC--RDH 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT+           F +    ++P         ID  L    +    +
Sbjct: 410 LEQFGGHHQAAGLTLRPEQLEAFRRRFDEVCRELLPVEARQKTLLIDADLTLDEITPKFL 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++LE   P+G  N  P+F     +L    +++   H++ T   + S + + IAF      
Sbjct: 470 NVLEQFAPFGFSNREPLFTATGCRLVGKPKLLRERHVKFTVRGEQSSSFEVIAFDRPDI- 528

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +         + +      N W G +  QLRV+D +
Sbjct: 529 FNDLEAHGSASALQLVCIPERNQWNGREYVQLRVMDMA 566


>gi|261211513|ref|ZP_05925801.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC341]
 gi|260839468|gb|EEX66094.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC341]
          Length = 579

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/588 (29%), Positives = 280/588 (47%), Gaps = 30/588 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
           +       ++          I  ++ R+ +NR V        L  + + L      L   
Sbjct: 4   IQRRPDPDLSLLPD-----HIDPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGI 54

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGP 137
           ++A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +P+R  DGYG 
Sbjct: 55  ERAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGL 114

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +P ++++ I  GA++I+TVD G +S + ++YA  +G+ V+V DHH    +     A+VNP
Sbjct: 115 SPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQQLPEVDAMVNP 174

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDV 253
           N          L   GV F +++ +   +RQ             L+ L+DLVAL TV DV
Sbjct: 175 NLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADV 234

Query: 254 VPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           VPL   NR  V +GL   R     PG++ALIE        + A + G+ +GP INA GR+
Sbjct: 235 VPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRL 294

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQAS 369
            + + G  LL+ ++      +A +LD LNQ R+ +E        A  + L   DD +   
Sbjct: 295 DDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPY 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA- 428
            +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G  +   +    
Sbjct: 355 GLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKID 414

Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
               GI++K GGHAMAAGLT+E  NF R C  F +     +       +   DG L    
Sbjct: 415 TQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQVVREELDEAALKGIILSDGELKPEE 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQ 542
            ++   ++L + GP+G   P P+F     K+   ++V   HL++  E        +  + 
Sbjct: 475 FSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMID 533

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            IAF V      +    +  K + +   L +N +RG++  QL +    
Sbjct: 534 GIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577


>gi|294139503|ref|YP_003555481.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella violacea
           DSS12]
 gi|293325972|dbj|BAJ00703.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella violacea
           DSS12]
          Length = 574

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 286/565 (50%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +   ++ ++  +R  + +      + ++  L+  P  +   D A++ I   I ++  I+I
Sbjct: 19  SFSPLLKQIYASRGTTAEEC----DLTLSRLLR-PNTMKGLDIASKIIADGIRDNRSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S  + +  L        +  IP+R   GYG +P ++    ++GA+L+ITV
Sbjct: 74  MGDFDADGATSTCVCLLALKMMGASKIDYLIPNRFDFGYGLSPEIVAVAHSKGAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH        A A+VNPN++D       +   GV F
Sbjct: 134 DNGISSIEGVAAAKALGMQVVITDHHLPGKTIPDADAIVNPNQVDCGFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ N          +L  LLD+VAL TV DVV L G NR  V  GL   R
Sbjct: 194 YLMSALRAELRQRNWYQEQGISEPNLAHLLDIVALGTVADVVALDGNNRILVEAGLKRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ DD     
Sbjct: 254 AGRCRAGITALLEVAKRNPAKIVAADFGFAVGPRLNAAGRLDEMALGVETLLCDDMMSAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LN  RR +E+ M ++A   + + + ++      I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDGLNAERRDLEADMQQEALKSLESVELNEASLPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +K+++ RP  A +   +G+  GS RSI+G  +  ++    +   G+++K GGHAMAAGL+
Sbjct: 374 IKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F      F      ++     T  F  DG L+A+ +N+ +   L +AGP+G   P
Sbjct: 434 LRGKDFETFEQAFDLAVRELLKPEQLTGEFVTDGDLSAADMNLTVASELRNAGPWGQEFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + K+   R+V   HL++  E++  +T L AIAF +      +  ++       
Sbjct: 494 EPLFDG-HFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKTWPDATIEHA----Q 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           V   L VN +RG++  QL V    P
Sbjct: 549 VVYKLDVNEFRGNQTVQLMVEQIEP 573


>gi|332140211|ref|YP_004425949.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550233|gb|AEA96951.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 573

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/563 (32%), Positives = 284/563 (50%), Gaps = 19/563 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+   RN+      D L   +R L      L    +AA+ +  AI  +++I+I
Sbjct: 18  DLHPVIDRIYRGRNI--ANIDD-LENGLRGLTH-FNALKGMPEAAQILATAIEQNKRIII 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L     +  +  +P+R   GYG +  ++++   +GA +I+TV
Sbjct: 74  VGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVDEAAKQGADIIVTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +  D + +A   GI V+V DHH       PA A+VNPN+        +L   GV F
Sbjct: 134 DNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKNLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   L+Q            +L SLLD+VA+ TV DVV L   NR  V +GL   R
Sbjct: 194 YIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIR 253

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             Q  PG+KAL+E  N   + +T+ +LG+++GP +NA GR+ + + G   L+ DD+ +  
Sbjct: 254 AGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLLEDDTIQAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAAR 389
           M+A +LD LN+ RR +E+ M  QAE  +     D     S +VV  + +H G++G++A R
Sbjct: 314 MIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYREDFHQGVIGIVAGR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           LKEK+ +P  A + ++D    GS RSI G  I  ++        G++ K GGHAMAAGL+
Sbjct: 374 LKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +           F   A   +  L        DG L+AS + +    +L  AGP+G G  
Sbjct: 434 LPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAHLLRQAGPFGQGFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           +P+F      L   R+V   HL+M  +   +  + AIAF V           +  KR+HV
Sbjct: 494 SPLFDGE-FSLLDQRLVGQKHLKMVLKGDGANEVDAIAFNVDLKAWP----NAMVKRVHV 548

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L +N +RG +  QL V    
Sbjct: 549 AYRLDINVFRGQETVQLIVEQIE 571


>gi|259046822|ref|ZP_05737223.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella
           adiacens ATCC 49175]
 gi|259036445|gb|EEW37700.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella
           adiacens ATCC 49175]
          Length = 771

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 170/586 (29%), Positives = 298/586 (50%), Gaps = 29/586 (4%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S + + W             +++ +  +   + R+ V R + + +  ++FL+P+   L+ 
Sbjct: 2   SFANYAWKLKE-NVDEELVTSLSSESGVSRNLVRLCVERGIQTAEELQEFLSPT-PHLIH 59

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP +L D DKA  RI +AI N E I I+GDYD DG  S  ++   L       + Y+P+R
Sbjct: 60  DPFLLHDMDKAVGRIQEAIENGELIHIYGDYDADGITSTTILYETLEMLGAQVSYYLPNR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             DGYGPN    ++ I EG  LIITVDCG  +++ ++YA   G DVI+ DHH++ SE   
Sbjct: 120 FTDGYGPNTPAFQRVIEEGHTLIITVDCGIAAHEPIRYAMENGCDVILTDHHEIPSEIPE 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           AYA+V+P   +     G L  AGV F +   +     +            +++L A+ T+
Sbjct: 180 AYAVVHPRHPEANYPCGDLSGAGVAFKLAHALLGEFPE-----------EMVELAAIGTI 228

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGG 309
            D+V L   NR     G+   ++    GL +L+E++++    +  + +G+ IGP +NA G
Sbjct: 229 ADLVSLTDENRTIAKLGIAQMKQTQRIGLVSLLEKLSVKMDKLDEKTIGFQIGPRLNALG 288

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G++  G +LL + D +E + +   +   N+ R+ + + ++E+A   +  Q        
Sbjct: 289 RLGDATPGVQLLTTFDDEEAQSIVDFMQSENERRQAIVNQIVEEATPIIQEQM----NQP 344

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA 428
           ++V+    WH G++G++A+R+ E+ G+P+  +   +DG    GSGRS   F++   ++  
Sbjct: 345 ILVLAQPGWHEGVLGIVASRIVEQTGKPTLVLGISDDGLTAKGSGRSFGEFNLYDALTSV 404

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             +  L+K GGH MAAGLTVE +    + D  +++A +    L       ID VL    +
Sbjct: 405 --KDHLLKFGGHHMAAGLTVETIMLPTIIDGLEQYAKDHQDLLDAKATLTIDEVLPLKDI 462

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIA 545
            +  I+ L S  P+G  NP P+ +    ++ S +++     HL++  +  +S  TLQA+A
Sbjct: 463 TVEWIESLASLKPFGTDNPEPIVSLEGIQVASTQLLGADKKHLKLHLKEDNSTYTLQAMA 522

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           F                 ++ + G L +N W+ ++  QL V D + 
Sbjct: 523 FSKGEW----AASLQPDTKISIAGTLEINEWQNNRLPQLMVKDIAV 564


>gi|333029270|ref|ZP_08457331.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           coprosuis DSM 18011]
 gi|332739867|gb|EGJ70349.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           coprosuis DSM 18011]
          Length = 572

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/586 (28%), Positives = 281/586 (47%), Gaps = 22/586 (3%)

Query: 15  GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
            + W       + +  +  + ++  I  I+ ++L+ R + + + A+ F +P ++ L  DP
Sbjct: 2   NYLWNYQNSSTKQLEESHKLAKELGINPILGKLLIQRGIHTPNDARTFFHPQLKDLH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D D A  R+ QAI N E+I+I+GDYDVDG  SV+L+ RFL     N + YIP+R  
Sbjct: 61  FLMKDMDIAVDRLNQAIGNKERILIYGDYDVDGTTSVSLVYRFLQEYYSNIDYYIPNRYN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G  LII +DCG  + + + YA N+GID I+ DHH       PA 
Sbjct: 121 EGYGVSQQGIDFAKETGVSLIIVLDCGIKAVEEITYAKNKGIDFIICDHHVPDDVLPPAI 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  RLD+      L   GV F  +    +     N      +L+ LLDLVA++   D
Sbjct: 181 AILNAKRLDNTYPYTDLSGCGVGFKFMQAFAQ-----NNGIEFHNLVPLLDLVAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLK++I+  +     IT  ++ + IGP INA GRI
Sbjct: 236 IVPIMGENRILAYHGLKQLNNNPSIGLKSIIDVCSLEDREITISDIVFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LLI  D ++   +A +++  N+ R+ ++  M E+A  +++    D+     +
Sbjct: 296 ENGKEAVDLLIERDYEKAIKIAKRINEYNETRKDLDKNMTEEA-NQIVENISDLSDLRSV 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  ++WH G++G++A+RL E + RP+  +    +    GS RS+ GFDI K +     +
Sbjct: 355 VLYNEKWHQGVIGIVASRLTEVYYRPAVVLCKSGE-FATGSARSVPGFDIYKAIEHC--K 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+ +    +    T P   ID  L+   +   
Sbjct: 412 DLLESFGGHTYAAGLSLKEENIKEFNRRFEAYVTEHILPEQTHPSINIDAELDFQEITRK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLA--HLQMTFES-QDSETLQAIAFR 547
               L+   PYG  N  P+F         + +VV     H+++     + +  L  IAF 
Sbjct: 472 FCKDLKKFNPYGPYNQKPIFCTHQVYDYGTSKVVGRNQEHIKLELIDSKSNNILNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                          +   +   +  N  R     QL + D  P+E
Sbjct: 532 QSN----HVRYIKSRRSFDICYTIEANTHR-KGEIQLHIEDIKPIE 572


>gi|294792134|ref|ZP_06757282.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp.
           6_1_27]
 gi|294457364|gb|EFG25726.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp.
           6_1_27]
          Length = 660

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/589 (31%), Positives = 292/589 (49%), Gaps = 24/589 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           I   RW    G         + ++  +  IVA+++VNR++ +D  + FL  ++  L+ DP
Sbjct: 2   IKKKRWRLCEGDREKESI--LIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLL-DP 58

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D A   +++ I + + I+I+GDYDVDG  + +++ RFL     +   YIP+R  
Sbjct: 59  FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   ++  I  G  L+ITVDCG +SYD ++   ++ I++I+ DHH        A 
Sbjct: 119 EGYGLNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDR-INMIITDHHTAPDVIPRAK 177

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  + D      +L   GV F +   ++               L  LD+VAL TV D
Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR  V  GL       N G+  LI+        IT+ ++GY + P +NA GR+
Sbjct: 231 VVPLVGENRIIVKSGLEKMNSYPNLGINKLIDVSGLHERTITSGHIGYTLAPRLNAAGRV 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL++DD+   E +A +L+  N+ R+ +E  + E A   V  Q        V 
Sbjct: 291 THATRAVELLVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKA--DYVT 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +V G+ WHPG++G++A+RL E+F +P+  IS  + G G GS RSI+GF+I   +     E
Sbjct: 349 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            IL++ GGH+ AAG +++      L +   K+   +V A    PV  ID  L    +++ 
Sbjct: 406 DILLQFGGHSAAAGFSIDANRIDELRERLTKYCKEVVTAEEYIPVVAIDAELPVDDIDVD 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           +ID +    PYG  N  PVFA     +Q I ++     H ++ F + +  TL AIA+   
Sbjct: 466 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNG-TLDAIAWNRP 524

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                 F     G  + V   L  N W+G    QL +    P+      
Sbjct: 525 DL----FRSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPLTEEPIK 569


>gi|152971838|ref|YP_001336947.1| ssDNA exonuclease RecJ [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896432|ref|YP_002921170.1| ssDNA exonuclease RecJ [Klebsiella pneumoniae NTUH-K2044]
 gi|150956687|gb|ABR78717.1| ssDNA exonuclease, 5' --> 3' specific [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548752|dbj|BAH65103.1| single-stranded-DNA-specific exonuclease [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 577

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/565 (32%), Positives = 280/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    LT  +KA   +  A      I++
Sbjct: 21  DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHDAFQKGLHIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDARGIPAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +   +WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSADTLPGGLAMYHPQWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L A+ +++ +  ML  AGP+G   P
Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAAAEMSMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVDGGPLLDGIAFNVDTSIWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576


>gi|288927678|ref|ZP_06421525.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330512|gb|EFC69096.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 582

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/586 (28%), Positives = 282/586 (48%), Gaps = 22/586 (3%)

Query: 16  FRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W+       +  A   + +K  +  I+A++L+ R ++ +  AK F  P +  ++ +P 
Sbjct: 3   FKWIYEPLSPQMQSAAKELGEKLNMSTILAQLLIRRGITTESAAKRFFRPQLNDII-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+IM++GDYDVDG  SVAL+ +FL     N   YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTSVALVYKFLQQFYSNIEYYIPDRYEE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +L+I +DCG  + + + YA + GID I+ DHH    E  PA A
Sbjct: 122 GYGVSRKGIDYAHQSGVKLVIILDCGIKAIEEIAYAKSLGIDFIICDHHVPDEEMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HL   GV F  +    +     N       L+ +LDL A++   D+
Sbjct: 182 ILNPKRPDDHYPFKHLSGCGVGFKFMQAFAK-----NNGIPFSRLIPMLDLCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V +   NR     GL    +  + GLKA+I+   +S   I+  ++ + IGP INA GR+ 
Sbjct: 237 VQVEEENRILAFHGLKQLNQNPSLGLKAIIDICGLSGKEISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  ++  N+ R+ ++  M E+A  +++ + +  ++ S IV
Sbjct: 297 SGKESVSLLVEKDYNVALQSAKHINEYNEQRKDIDKQMTEEA-NQIVARLESQKKQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  I+  +     GS RS+ GFDI   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVIT-RDGDFATGSARSVMGFDIYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT+   +  R  + F ++  N +    T  +  ID +++   +   +
Sbjct: 413 LLINFGGHTYAAGLTMRWDDVPRFVERFHQYVDNHILPEQTEAILHIDEIIDFKDITKKM 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GN  P F   N     + +VV     H+++     + S  +  IAF  
Sbjct: 473 HHDLKKFSPFGPGNLKPRFCTNNVYDYGTSKVVGREQEHIKLELIDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
             +           +   +   +  N +R +   QL++ D    E 
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFRHN-NVQLQIEDIRLTES 573


>gi|212636943|ref|YP_002313468.1| RecJ exonuclease [Shewanella piezotolerans WP3]
 gi|212558427|gb|ACJ30881.1| RecJ exonuclease [Shewanella piezotolerans WP3]
          Length = 637

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/565 (30%), Positives = 281/565 (49%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++  ++ ++  +R VS +  +  L   +R     P  +    +AA  +  AI   + I+I
Sbjct: 82  SLSPLLKQIYASRGVSANECELSLGKLLR-----PNTMLGVTQAAEIVADAIAAQKSILI 136

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L     N  +  IP+R   GYG +P ++     +GAQLIITV
Sbjct: 137 MGDFDADGATSTSVCMLALKMMGANNIDYLIPNRFDYGYGLSPEIVAVAAQKGAQLIITV 196

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH        A A+VNPN+         +   GV F
Sbjct: 197 DNGISSIEGVAAAKALGMTVVITDHHLPGQSIPDADAIVNPNQHGCEFASKSIAGVGVAF 256

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-A 271
            ++  +   LRQ +          +L  LLD+VAL TV DVV L   NR  V  GL    
Sbjct: 257 YLMSALRAELRQRDWYQQQGINEPNLGHLLDIVALGTVADVVSLDTNNRILVEAGLQRVK 316

Query: 272 RRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 317 AGRCRVGITALLEVAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMLAR 376

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LN  RR +E+ M ++A   + + + ++ +    I +    WH G++G+LA+R
Sbjct: 377 RMASELDSLNAERRDLETEMQQEALKSLESVELNESELPWGIALFQADWHQGVIGILASR 436

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   DG+  GS RSI+G  +  ++    +   G+++K GGHAMAAGL+
Sbjct: 437 IKDKYHRPVIAFADAGDGQIKGSARSIKGLHMRDLLELINSRHPGLILKFGGHAMAAGLS 496

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F    D + K   +I+   + T     DG L      + L   L +AGP+G   P
Sbjct: 497 IKAGQFALFADAYDKAIRDILAPELLTGELVSDGELTPDQFTLPLAAELRAAGPWGQNFP 556

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + ++   R+V   HL++  E++  +  L AIAF V      +  +Q       
Sbjct: 557 EPLFDG-HFRIIQQRIVGEKHLKLVLETECGQVMLDAIAFNVDLKTWPDASIQHA----E 611

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG++  QL V   +P
Sbjct: 612 IVYKLDVNEFRGNQTLQLMVDQIAP 636


>gi|62181552|ref|YP_217969.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224584831|ref|YP_002638629.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62129185|gb|AAX66888.1| ssDNA exonuclease, 5' --> 3' specific, Mg dependent [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224469358|gb|ACN47188.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322716033|gb|EFZ07604.1| peptide chain release factor RF-2 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 577

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|16766343|ref|NP_461958.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56414988|ref|YP_152063.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167994105|ref|ZP_02575197.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168236101|ref|ZP_02661159.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168463790|ref|ZP_02697707.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168823067|ref|ZP_02835067.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444014|ref|YP_002042293.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194735123|ref|YP_002115991.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197264288|ref|ZP_03164362.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363917|ref|YP_002143554.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|17865729|sp|P28355|RECJ_SALTY RecName: Full=Single-stranded-DNA-specific exonuclease recJ
 gi|16421593|gb|AAL21917.1| ssDNA exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129245|gb|AAV78751.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194402677|gb|ACF62899.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194710625|gb|ACF89846.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195633365|gb|EDX51779.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197095394|emb|CAR60953.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197242543|gb|EDY25163.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290731|gb|EDY30085.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|205328007|gb|EDZ14771.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205340641|gb|EDZ27405.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261248174|emb|CBG26010.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995196|gb|ACY90081.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159598|emb|CBW19117.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312914063|dbj|BAJ38037.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087471|emb|CBY97236.1| ssDNA exonuclease, 5'-> 3' specific [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225717|gb|EFX50771.1| Single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613440|gb|EFY10381.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621032|gb|EFY17890.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624096|gb|EFY20930.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628165|gb|EFY24954.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633284|gb|EFY30026.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636138|gb|EFY32846.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322647591|gb|EFY44080.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648775|gb|EFY45222.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653830|gb|EFY50156.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657936|gb|EFY54204.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664039|gb|EFY60238.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668950|gb|EFY65101.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673056|gb|EFY69163.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677953|gb|EFY74016.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681129|gb|EFY77162.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687941|gb|EFY83908.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323131398|gb|ADX18828.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323194863|gb|EFZ80050.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196614|gb|EFZ81762.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202686|gb|EFZ87726.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207827|gb|EFZ92773.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212621|gb|EFZ97438.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214896|gb|EFZ99644.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222627|gb|EGA06992.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225094|gb|EGA09346.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230616|gb|EGA14734.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235033|gb|EGA19119.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239072|gb|EGA23122.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244570|gb|EGA28576.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247185|gb|EGA31151.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253332|gb|EGA37161.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256361|gb|EGA40097.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262463|gb|EGA46019.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267441|gb|EGA50925.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269155|gb|EGA52610.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332989909|gb|AEF08892.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 577

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|256819192|ref|YP_003140471.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           ochracea DSM 7271]
 gi|256580775|gb|ACU91910.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           ochracea DSM 7271]
          Length = 564

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/580 (27%), Positives = 281/580 (48%), Gaps = 23/580 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + W              + Q+  I + +A +L  R V+    AKDF  P+   L  +P +
Sbjct: 3   YTWNFKPLPPQ-AIVATLQQELNISEPLAILLAQRGVTTFQQAKDFFRPTFSQLH-NPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +    +A  R+ +A+ ++E I+I+GDYDVDG ++V+ M R+LS+ +   + Y+PDR  +G
Sbjct: 61  MKGMKEAVARLDRALKSNETILIYGDYDVDGTSAVSFMERYLSNFTSKLHTYVPDRYTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++    +G  LII +DCG  + D ++YA  + ID I+ DHH+   +   A A+
Sbjct: 121 YGISFQGIDYAEAQGCTLIIALDCGIKAIDKVEYAKEKAIDFIIADHHRPSEQVPDAIAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P + D       LC  G+ F +    +  L          +L+ LLDLVA+AT  D+V
Sbjct: 181 LDPQQADCPYPYKELCGCGLGFKLAQAYHEYL-----QRPFSELIPLLDLVAVATAADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL V     + G+KAL         IT  ++ +   P +NA GRI   
Sbjct: 236 PMNGENRCLTYFGLEVLNNNPSAGVKALFGEHQGK--ITITDVVFKAAPRVNAAGRIEHG 293

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL   D ++  + A ++D LN +R+ ++S++  +A  ++  + +  Q+    VV 
Sbjct: 294 KYAVALLTETDEEQAVLKAKEIDALNTHRKELDSSIAAEALNQI--EANGEQEHYTSVVF 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+RL E + RP+   +     K   S RS++GFDI + +    E   L
Sbjct: 352 NEEWHKGVIGIVASRLIEHYYRPTVVFTKSG-NKYAASARSVQGFDIYEALEQCSEY--L 408

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAGLT+    +    + F++     + + +  P   ID  L  S +   L +
Sbjct: 409 EQFGGHKYAAGLTLRPEQYPLFKNAFEEVVKQTIDSSLRIPKLFIDTALPLSKLTQKLYN 468

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSET-LQAIAFRVYG 550
           +L+   P+G  N  P+F   N       + +     HL++T +   + +   A+ F +  
Sbjct: 469 VLKQFEPFGPLNLPPLFYAENVIDTGFAKRIGKDEEHLKLTLKEVGTTSYYDAVGFGLAH 528

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +  + + G+   +   +  N W G    QL++ D  
Sbjct: 529 ----KLPIVTSGRPFSIVYSIEENQWNGRASLQLQIRDIK 564


>gi|37527423|ref|NP_930767.1| ssDNA exonuclease RecJ [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786858|emb|CAE15923.1| Single-stranded-DNA-specific exonuclease RecJ [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 577

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ R+   R +      + L   ++ L+ +   L+  ++A   ++ A++   +I+I 
Sbjct: 22  IHPLLRRLYAIRGI---QQANELERGVQGLL-NYQHLSGVEQAVALLLTALHEHWRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +R L        +  +P+R  +GYG +  ++E+ + +GA LIITVD
Sbjct: 78  GDFDADGATSTALAIRSLRSMGYRHLDYLVPNRFDNGYGLSSQVVEEVVKKGADLIITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S++ +  A    + VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHEGVAAAHQHRMKVIVTDHHLPGDVLPAADAIINPNLADCSFPSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LR+D           +L  +LDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMSALRAALRKDQWFEKQGIALPNLAEMLDLVALGTVADVVPLDTNNRILVYQGLNRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G++AL+E  +     +TA +LG+ +GP +NA GR+ + ++G  LL++DD  +   
Sbjct: 258 GRCCAGIRALLEVSSRDAYKLTASDLGFFLGPRLNAAGRLDDMSIGVTLLLTDDIAKARQ 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LNQ RR +E  M ++A       +    +    + +    WH G+VG+LA+R+
Sbjct: 318 IACELDSLNQTRREIEQGMQQEALQICDKLERTSTELPYGLALYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS++G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGILKGSGRSVQGLHMRDALERLDTLHPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F +    F     + +       V   DG L  + +++ + +ML   GP+G   P 
Sbjct: 438 EQDKFEQFQYHFSTLMADWLDISQLEGVIWSDGELAINELSLDIAEMLRDGGPWGQAFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     KL   R+V   HL++  E       L  IAF +  T   +    +  + + +
Sbjct: 498 PIFDGK-FKLLQQRIVGERHLKVIVEPLNGGPMLDGIAFNIDPTRWPD----NSVREVEL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG++  QL +    P
Sbjct: 553 AYKLDVNEFRGNRNVQLLIQHLWP 576


>gi|163803383|ref|ZP_02197259.1| ssDNA exonuclease RecJ [Vibrio sp. AND4]
 gi|159172845|gb|EDP57687.1| ssDNA exonuclease RecJ [Vibrio sp. AND4]
          Length = 579

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   D+A   + QAI   ++I+I
Sbjct: 18  SIPAILKRIYINRGITD---VAQLETSARGLHSY-QQLGGIDQAVELLFQAIKGQKRIII 73

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIDGVRYAKEHGITVLVTDHHLPGQVLPDVDAMVNPNLDSCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKQNWFVQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL++++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMANNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   ++ Q    +V+    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSQLPHGLVLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+K+KF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKDKFHRPVIAFADGGEGTIKGSCRSIVGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F       +       V   DG L     ++ + + L S GP+G   
Sbjct: 434 TIKEQDFERFSRLFDDVVKRELDEAALKGVIMSDGELKPEEFSMQIAEQLRSGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P PVF     K+   ++V   HL++  E        +  +  IAF +      +    + 
Sbjct: 494 PEPVFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNIDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L VN +RG++  QL +    
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577


>gi|268591700|ref|ZP_06125921.1| single-stranded-DNA-specific exonuclease RecJ [Providencia rettgeri
           DSM 1131]
 gi|291312659|gb|EFE53112.1| single-stranded-DNA-specific exonuclease RecJ [Providencia rettgeri
           DSM 1131]
          Length = 577

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/565 (31%), Positives = 275/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P+++ R+  +R ++       L      L+ D   L+  DKA   + +A+   E I I
Sbjct: 21  GLPELLQRIYQHRGITD---ITQLERKAANLL-DYRTLSGVDKALPLLYRALNEHEAITI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +R L      N N  +P+R  +GYG  P ++E+    G  LIITV
Sbjct: 77  VGDFDADGATSTALAIRALKSMGYRNINYIVPNRFENGYGLTPLVVEEARKRGTNLIITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S++ +  A   G++VI+ DHH        A A++NPN  +       L   GV F
Sbjct: 137 DNGISSHEGVAVANQYGMNVIITDHHLPGETLPAADAIINPNLNECCFASKSLAGVGVTF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ            +L   LDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 197 YLMSALRAYLRQQGWFVQQGLAEPNLAEYLDLVALGTVADVVPLDTNNRILVHQGLNRVR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+KALIE        + A + G+ +GP +NA GR+ + ++   LL++DD     
Sbjct: 257 AGRCCAGIKALIEVSKRDLPRLVANDFGFALGPRLNAAGRLDDMSVSIELLLTDDMAYAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA +LD LNQ RR +E+ M ++A       +  + Q  + + +    WH G+VG+LA+R
Sbjct: 317 ELANELDGLNQTRREIEAGMQQEALVLFNQFEYGESQLPNGLAIYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE++ RP  A +   DG   GSGRSI+G  +   +      + GI+ K GGHAMAAGLT
Sbjct: 377 IKEQYHRPVIAFAPAGDGLLKGSGRSIQGVHMRDALERLNTLQPGIMQKFGGHAMAAGLT 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +    F      F+     +V       +   DG L+ +   +   +++  +GP+G   P
Sbjct: 437 LHVEQFDAFKHHFELLMGELVQPEQLAGIIWSDGELSRNEFCLETAELIRESGPWGQAFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L AI F +      +    +  K+  
Sbjct: 497 EPIFDGE-FQLLQQRLVGERHLKLMLEPINGGPMLDAIMFNIDVRRWPD----NSIKKAK 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L VN +RG K  QL +    P
Sbjct: 552 IAFKLDVNEYRGQKNVQLMIEHIWP 576


>gi|288933628|ref|YP_003437687.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella variicola
           At-22]
 gi|290511306|ref|ZP_06550675.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp.
           1_1_55]
 gi|288888357|gb|ADC56675.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella variicola
           At-22]
 gi|289776299|gb|EFD84298.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp.
           1_1_55]
          Length = 577

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    LT  +KA   + +A      I++
Sbjct: 21  DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHEAFEKGLHIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDARGIAAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +   +WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSSDTLPGGLAMYHPQWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L A+ +++ +  ML  AGP+G   P
Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAATEMSMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSIWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576


>gi|109900013|ref|YP_663268.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoalteromonas
           atlantica T6c]
 gi|109702294|gb|ABG42214.1| exonuclease RecJ [Pseudoalteromonas atlantica T6c]
          Length = 572

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 284/565 (50%), Gaps = 19/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +I   + ++  +R ++ +     L  S + L+     ++  D A   +  A+    +I+I
Sbjct: 17  SINPTLKQIYASRGITSEQQ---LERSAKALLHY-KDMSGVDTAVSILADALAKGRRIII 72

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL M  L      N +  +P+R   GYG +P +++    +GAQ+I+TV
Sbjct: 73  VGDFDADGATSTALSMLALGMMGSKNHDYLVPNRFNFGYGLSPQIVDVAHEQGAQVIMTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  ++ A   GI V++ DHH        A A+VNPN+ +      +L   GV F
Sbjct: 133 DNGIACFAGVERAKELGITVLITDHHLAAESLPVADAIVNPNQPNCSFMSKNLAGVGVAF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LRQ +    N     +L  LLD+VAL TV DVVPL   NR  V +GL+  R
Sbjct: 193 YLMLALRAHLRQIDWFAQNNLAVPNLADLLDIVALGTVADVVPLDENNRILVHQGLLRIR 252

Query: 273 -RQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL++            +LG++IGP +NA GR+ + ++G   L++D   + +
Sbjct: 253 SDKCRPGIQALVDVAGRDKRKMVASDLGFVIGPRLNAAGRLDDMSMGIECLLTDSDYKAK 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAAR 389
            +A++LD LN+ RR +E +M ++A   +       Q   + +V     +H G++G+LA R
Sbjct: 313 QIAVELDSLNRERREIEQSMQQEAVTTLENLQLSEQDMPLGLVLYQADFHQGVIGILAGR 372

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEK+ RP+ A + ++D    GS RSI G  I  ++        G+++K GGHAMAAGL+
Sbjct: 373 IKEKYFRPTIAFAHQDDEILKGSARSIPGVHIRDLLEELGTRYPGVIIKFGGHAMAAGLS 432

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E          F + A   +           DG + AS++ +    +L+ AGP+G G P
Sbjct: 433 IEARKLDEFKLRFTQLAEEHLAGKPLAGELISDGEIPASSLTLEFSQLLKDAGPWGQGFP 492

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
            P+F     +L   R+V   HL+M       + + AIAF V      +     + K + +
Sbjct: 493 EPLFDGE-FELVEQRIVGQKHLKMMLRMPSGKLIDAIAFNVDT----QIWPNEQCKHVEL 547

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG    Q  V   +P+
Sbjct: 548 AYKLDINEFRGRTSLQFLVEGLNPL 572


>gi|330010995|ref|ZP_08306939.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp. MS
           92-3]
 gi|328534332|gb|EGF60943.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp. MS
           92-3]
          Length = 560

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/564 (32%), Positives = 280/564 (49%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    LT  +KA   +  A      I++ 
Sbjct: 5   LPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHDAFQKGLHIVVV 60

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++    GAQ+I+TVD
Sbjct: 61  GDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTVD 120

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A   GI V+V DHH        A A+VNPN  D       L   GV F 
Sbjct: 121 NGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAFY 180

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R 
Sbjct: 181 LMLALRTFLRDKGWFDARGIPAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRA 240

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 241 GKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 300

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +   +WH G+VG+LA+R+
Sbjct: 301 LANELDALNQTRKEIEQGMQAEALTLCQQLERSADTLPGGLAMYHPQWHQGVVGILASRI 360

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 361 KERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLSL 420

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L A+ +++ +  ML  AGP+G   P 
Sbjct: 421 EEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAAAEMSMEVAQMLRDAGPWGQMFPE 480

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + +
Sbjct: 481 PLFDGR-FRLLQQRLVGERHLKVMVEPVDGGPLLDGIAFNVDTSIWPD----NGVREVQL 535

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 536 AYKLDINEFRGNRSLQLIIDHLWP 559


>gi|157148429|ref|YP_001455748.1| ssDNA exonuclease RecJ [Citrobacter koseri ATCC BAA-895]
 gi|157085634|gb|ABV15312.1| hypothetical protein CKO_04254 [Citrobacter koseri ATCC BAA-895]
          Length = 577

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 278/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     N  +  +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRSLGCNNISYLVPNRFEDGYGLSPEVVDQAHARGAQMIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +++A   GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHTGVEHARALGIPVVVTDHHLPGDTLPDAEAIINPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGITPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEVSNRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSRETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P
Sbjct: 437 LEEAQFEHFQQRFGELVTEWLDPSLLQGEVVSDGPLSVAEMTMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V      +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTACWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576


>gi|313159678|gb|EFR59035.1| single-stranded-DNA-specific exonuclease RecJ [Alistipes sp. HGB5]
          Length = 588

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/596 (29%), Positives = 281/596 (47%), Gaps = 34/596 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RWV    Q        +     I  ++A +LV R +   + A  F  PS+  L  DP +
Sbjct: 5   KRWVVKP-QGDSEAVAKLASVLRISPVLANLLVQRGIDTVEKADKFFKPSLADLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVD 133
           + D DKA  R+ QA+ N+EKIM++GDYDVDG  +VAL+ +FL      N   YIPDR  +
Sbjct: 63  MKDMDKAVERVEQAVRNNEKIMVYGDYDVDGCTAVALVYKFLRQIGHKNLMFYIPDRYTE 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++    +G  LII +DCG  + + + YA ++G+D I+ DHH    E   A A
Sbjct: 123 GYGISVKGIDLAARKGVGLIIALDCGIKATEKIVYAKSKGVDFIICDHHLPAEEIPRAVA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P R+D       L   GV F ++    +  R          +  LLDL+ ++   D+
Sbjct: 183 VLDPKRVDCSYPFDELSGCGVGFKLVQAYAQKNRI-----PFEQISPLLDLLVVSIASDI 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VPL+  NR     GL    R+ + GL ++I+        IT +++ + IGP INA GR+ 
Sbjct: 238 VPLVDENRILAHFGLKDLNREPSKGLLSIIKICGLDKHNITIDDIVFKIGPRINAAGRMR 297

Query: 313 ESNL-----------GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
                             LLI  +          +D  NQ+R+ ++ ++ ++A   +  +
Sbjct: 298 MDENDENASPSGGHAAVELLIEGNESIAAEFGNVIDAYNQDRKSIDRSVTQEAHDFI-ER 356

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
             +++Q    V+   +W  GIVG++A+RL E + RP+  ++   +G   GS RS+ GFD+
Sbjct: 357 NPEMKQLKSTVIYNPKWMKGIVGIVASRLIETYYRPTVVLT-MSNGFVTGSARSVPGFDL 415

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            + V       +L   GGH  AAGLT+   N       F  +    +   +  P   ID 
Sbjct: 416 YQAVESC--SDLLENFGGHMYAAGLTMRPENVDEFTRRFNAYVEENIDPQMLMPQVDIDS 473

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF--ESQ 536
            L  S +  A    L    P+G GN  PVFA          ++V +   HL+M      +
Sbjct: 474 ELLFSDITPAFRKDLNRFQPFGPGNTAPVFATYGVSNHGDAKLVGVECEHLRMDLIQRQK 533

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +  +Q+IAF+        +     G+ + V   +  N++RG+   QLR+ D  PV
Sbjct: 534 PNTKIQSIAFQQPT----HYEWVRSGRPIDVCYQIVENHYRGTVTTQLRIKDIKPV 585


>gi|315179160|gb|ADT86074.1| ssDNA exonuclease RecJ [Vibrio furnissii NCTC 11218]
          Length = 579

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/568 (31%), Positives = 279/568 (49%), Gaps = 25/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP ++ R+ +NR VS       L  + + L      L   D A   + +AI   ++I++ 
Sbjct: 19  IPPLLRRIYLNRGVSSVEQ---LEKAAKALHSY-QQLHGIDAAVELLFEAIKQQKRIIVV 74

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ +   A++I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVEQALAMNAEMIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +++A   G+ V+V DHH   +E   A A+VNPN          L   GV F 
Sbjct: 135 NGVSSIEGVRFAKQHGLSVLVTDHHLPGAELPEADAMVNPNLQQCAFPSKALAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LMMALCVYMRRCGWFAEQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254

Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++      
Sbjct: 255 GKARPGIQALIEVAKRDARKLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAARR 314

Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +A +LD LNQ R+ +E        A  + L    D +    +V+    WH G++G+LA+R
Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAFCERLQFGKDTELPHGLVMFQRDWHQGVIGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GS RSI G  +   +        GI++K GGHAMAAGLT
Sbjct: 375 IKEQFHRPVIAFADGGDGLIKGSCRSIPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E  NF R    F +     +   +   V   DG L     ++ + +ML + GP+G   P
Sbjct: 435 IEEHNFERFSRLFDEVVRQDLDDALLKGVILTDGELAPEEFSMHVAEMLRAGGPWGQAFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            PVF     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 495 EPVFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 549

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL V    
Sbjct: 550 KTVRLAYKLDINEFRGNQSLQLMVDHLE 577


>gi|313893185|ref|ZP_07826762.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442538|gb|EFR60953.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 660

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/589 (31%), Positives = 293/589 (49%), Gaps = 24/589 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           I   RW    G         + ++  +  IVA++++NR++ +D  + FL  ++  L+ DP
Sbjct: 2   IKKKRWRLCEGDREKENI--LIRELGVNPIVAKLMMNRHIDVDEGRQFLQGTLSDLL-DP 58

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L   D A   + + I + + I+I+GDYDVDG  + +++ RFL     +   YIP+R  
Sbjct: 59  FTLKGMDVAVSLVQETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +E  I  G  L+ITVDCG +SYD ++   ++ ID+I+ DHH        A 
Sbjct: 119 EGYGLNLEALEHLIERGTALVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDMIPRAK 177

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  + D      +L   GV F +   ++               L  LD+VAL TV D
Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR  V  GL     + N G+K LI+        IT+ ++G+ + P +NA GR+
Sbjct: 231 VVPLVGENRIIVKAGLEKMNNRPNLGIKKLIDVAGLHERTITSGHIGFTLAPRLNAAGRV 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL++DD+   E +A +L+  N+ R+ +E  + E A   V  Q        V 
Sbjct: 291 THATRAVELLVTDDADIAEAIAEELNDTNRERQELERNIHELARIDVANQGHKA--DYVT 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV G+ WHPG++G++A+RL E+F +P+  IS  + G G GS RSI+GF++   +     E
Sbjct: 349 VVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNMYDALKSC--E 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            IL++ GGH+ AAG +++      L +   ++   IV A    PV  ID  L    +++ 
Sbjct: 406 DILLQFGGHSAAAGFSIDANRIDELRERLTEYCKKIVTAEEYIPVVAIDAELPVDDIDVD 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           +ID + +  PYG  N  PVFA     +Q I ++     H ++ F + +  TL AIA+   
Sbjct: 466 IIDRVSALEPYGMANSTPVFAVMEATVQDIMLMGQLKNHCKVIFATSNG-TLDAIAWNRP 524

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                 F     G  + V   L  N W+G    QL +    P+      
Sbjct: 525 DL----FKSIFVGSVVKVAFSLQKNEWQGMVSPQLMIQAIEPLNEEPIK 569


>gi|167550074|ref|ZP_02343831.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324703|gb|EDZ12542.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 577

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|146276882|ref|YP_001167041.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555123|gb|ABP69736.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 583

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/599 (41%), Positives = 339/599 (56%), Gaps = 36/599 (6%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S +G RWV    +E    A A+ Q   +P  + R LV R VS   A+ FL P
Sbjct: 7   RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVSATEAESFLAP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L+PDPL L D   AA R++QA+   EKI IF DYDVDG +S AL++ +L      A
Sbjct: 66  ALRDLLPDPLTLKDMAPAAARLLQAVARREKIAIFADYDVDGGSSAALLIVWLRAMGRAA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M+        LI+ VDCG+ S++ +  AT  G DV+V+DHH 
Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAA-AHDLILCVDCGTLSHEPIAAAT--GADVVVLDHHL 182

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+    GHLCAA VVFL+LV   R LR +       DL+++LD
Sbjct: 183 GTETLPPALAVVNPNRQDEDGSLGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PL G+NRA V +GL V  R+  PGL AL +   ++S      LG+++GP
Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVSRMNSAPNCYALGFLLGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL +DD +E + LA +LD LN  RR +E+ + E+A A+   +  
Sbjct: 301 RVNAGGRIGQADLGARLLATDDPREAQALAERLDQLNTERREIEARVREEALAQAEARGT 360

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                 ++   G+ WHPG+VG++AARLKE   RP+  I   E+G G GSGRSI G D+G 
Sbjct: 361 SG---PLVWAAGEGWHPGVVGIVAARLKEATNRPAIVIG-LENGIGKGSGRSISGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            V     EG+L+KGGGH MAAGLTVE    G   +           A       ++DGVL
Sbjct: 417 AVHRVAHEGLLLKGGGHRMAAGLTVEEGRLGAAMERLSDLLARQGAASAGPADLRLDGVL 476

Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
             SA   A ++ +E                         FA  + ++   R +   HL++
Sbjct: 477 MPSAATAAFVEQIESAGPYGAGAAAPR------------FALASQRVV-TRRMGEKHLRL 523

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T    +   L+A+AF  +  PLG  L        H+ G L ++ W GS R Q+R+ DA+
Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGLFHLAGRLEIDTWGGSARVQMRLEDAA 581


>gi|260911816|ref|ZP_05918383.1| recombination protein J [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634027|gb|EEX52150.1| recombination protein J [Prevotella sp. oral taxon 472 str. F0295]
          Length = 582

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/587 (28%), Positives = 282/587 (48%), Gaps = 22/587 (3%)

Query: 16  FRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           FRW+       +  A   + +K  +  I+A++L+ R ++ +  AK F  P +  ++ +P 
Sbjct: 3   FRWIYEPLSPQLQSAAKELGEKLNMSTILAQLLIRRGITTESAAKRFFRPQLNDII-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+IM++GDYDVDG  SVAL+ +FL     N   YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTSVALVYKFLQQFYSNIEYYIPDRYEE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++   + G +L+I +DCG  + + + YA   GID I+ DHH    E  PA A
Sbjct: 122 GYGVSRKGIDYAYHSGVKLVIILDCGIKAINEIAYAKTLGIDFIICDHHVPDEEMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HL   GV F  +    +     N       L+ +LDL A++   D+
Sbjct: 182 ILNPKRPDDNYPFKHLSGCGVGFKFMQAFAK-----NNGIPFSRLIPMLDLCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V +   NR     GL    +  + GLKA+I+   +S   I+  ++ + IGP INA GR+ 
Sbjct: 237 VQVEEENRILAFHGLKQLNQNPSLGLKAIIDICGLSGKEISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  ++  N+ R+ ++  M E+A  +++ + +  ++ S IV
Sbjct: 297 SGKESVSLLVEKDYNVALQSAKHINEYNEQRKDIDKQMTEEA-NQIVARLESQKKQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  I+  +     GS RS+ GFDI   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVIT-RDGDFATGSARSVMGFDIYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT+   +  R  + F ++  + +    T  +  ID +++   +   +
Sbjct: 413 LLINFGGHTYAAGLTMRWDDVPRFVERFHQYVDSHILPEQTEAILHIDEMIDFKDITKKM 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GN  P F   N     + +VV     H+++     + S  +  IAF  
Sbjct: 473 HHDLKKFSPFGPGNLKPRFCTNNVYDYGTSKVVGREQEHIKLELIDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             +           +   +   +  N +R +   QL++ D    E  
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFRHN-NIQLQIEDIRLTENE 574


>gi|206577627|ref|YP_002236651.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella
           pneumoniae 342]
 gi|206566685|gb|ACI08461.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella
           pneumoniae 342]
          Length = 577

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    LT  +KA   + +A      I++
Sbjct: 21  DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHEAFEKGLHIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDARGIAAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +   +WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSSDTLPGGLAMYHPQWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L A+ +++ +  ML  AGP+G   P
Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPSLLQGEVVSDGPLAATEMSMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSIWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576


>gi|257887529|ref|ZP_05667182.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,141,733]
 gi|257823583|gb|EEV50515.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,141,733]
          Length = 765

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 275/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQKAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I +G QLIITVD G    DA+ YA   G+DVI+ DHH++  +   AYA
Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   I      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + E+A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRS+E  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L   P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   ++ +++ +     HL+     + S+ L A+AF    
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               E L+ +    + V G L +N W G K+ QL V D + 
Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558


>gi|260599232|ref|YP_003211803.1| ssDNA exonuclease RecJ [Cronobacter turicensis z3032]
 gi|260218409|emb|CBA33494.1| Single-stranded-DNA-specific exonuclease recJ [Cronobacter
           turicensis z3032]
          Length = 553

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/561 (31%), Positives = 276/561 (49%), Gaps = 20/561 (3%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + R+  +R V        L  S++ L+P    L   D A   +  A+    +I++ GD+D
Sbjct: 2   LRRLYASRGVRGAQE---LERSVKGLLP-WQQLCGIDDAVAMLHDALREGLRIIVVGDFD 57

Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
            DGA S AL +  L      N    +P+R  DGYG +P ++++    GAQ+I+TVD G +
Sbjct: 58  ADGATSTALSVLALRALGGSNVAYLVPNRFDDGYGLSPEVVDQAHARGAQMILTVDNGIS 117

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           S+  +  A   GI V+V DHH        A A++NPN  +       L   GV F +++ 
Sbjct: 118 SHAGVTRAHELGIPVLVTDHHLPGDTLPAAGAIINPNLAECTFPSKSLAGVGVAFYLMLA 177

Query: 222 IYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           +   LR             +L   LDLV+L TV DVVPL   NR  + +GL   R  +  
Sbjct: 178 LRAHLRSVGWFTEKGIPEPNLAEFLDLVSLGTVADVVPLDANNRILIWQGLSRIRAGKCR 237

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
           PG++AL+E  N     +TA +LG+ +GP +NA GR+ + ++G  LL+ D+  E  MLA +
Sbjct: 238 PGIRALLEIANREAHRLTASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARMLANE 297

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ-QASVIVVEGDRWHPGIVGLLAARLKEKF 394
           LD LNQ R+ +E  M  +A           +   S + +    WH G+VG+LA+R+KE+F
Sbjct: 298 LDALNQTRKEIEQGMQAEALTLCQQLERSGEALPSGVAIFHPEWHQGVVGILASRIKERF 357

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVN 452
            RP  A +   +G   GSGRS++G  +   +        G+++K GGHAMAAGL++E   
Sbjct: 358 HRPVIAFAPAGEGILKGSGRSVQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEAR 417

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
           F      F +  ++ +   +       DG L    + + + +ML  AGP+G   P P+F 
Sbjct: 418 FPEFQARFAELVNDWLDPAMLQGEIWSDGALAPQEMTLEVAEMLRDAGPWGQMFPEPLFD 477

Query: 513 FPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
               ++   R+V   HL++  E       L  IAF V  T   +       + + +   L
Sbjct: 478 GR-FRILQQRLVGERHLKLMLEPVGGGPLLDGIAFNVDTTCWPD----PGVREVELAYKL 532

Query: 572 CVNYWRGSKRCQLRVLDASPV 592
            VN +RG++  QL +    PV
Sbjct: 533 DVNEFRGNRSLQLIIDHLWPV 553


>gi|293378804|ref|ZP_06624961.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           PC4.1]
 gi|292642597|gb|EFF60750.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           PC4.1]
          Length = 765

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 275/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I +G QLIITVD G    DA+ YA   G+DVI+ DHH++  +   AYA
Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   I      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + E+A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRS+E  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L   P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   ++ +++ +     HL+     + S+ L A+AF    
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               E L+ +    + V G L +N W G K+ QL V D + 
Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558


>gi|329957247|ref|ZP_08297767.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides clarus
           YIT 12056]
 gi|328522960|gb|EGF50063.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides clarus
           YIT 12056]
          Length = 571

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/582 (28%), Positives = 273/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLLGQEGINRA-LAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
           +W  L        A   + Q+  I  ++  +LV R ++   A K F  P +  L  DP +
Sbjct: 4   KWNYLPITSDQAEASQRLAQELGISPVLGELLVERGITTAAAAKKFFRPQLPDLY-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSTKGVDYAAETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  +++ + + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NQIVAELEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F++F    +    T+ V  I+  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTERFEEFVSQHILPEQTSAVIDINAEIDFRDITPKFC 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570


>gi|269798273|ref|YP_003312173.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula
           DSM 2008]
 gi|269094902|gb|ACZ24893.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula
           DSM 2008]
          Length = 661

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/589 (31%), Positives = 291/589 (49%), Gaps = 24/589 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72
           I   RW    G         + ++  +  IVA+++VNR++ +D  + FL  ++  L+ DP
Sbjct: 3   IKKKRWRLCEGDREKENI--LIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLL-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D A   +++ I + + I+I+GDYDVDG  + +++ RFL     +   YIP+R  
Sbjct: 60  FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   ++  I  G  L+ITVDCG +SYD ++   ++ I++I+ DHH        A 
Sbjct: 120 EGYGLNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDR-INMIITDHHTAPDVIPRAK 178

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  + D      +L   GV F +   ++               L  LD+VAL TV D
Sbjct: 179 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR  V  GL       N G+  LI+        IT+ ++GY + P +NA GR+
Sbjct: 232 VVPLVGENRIIVKSGLEKMNSYPNLGINKLIDVAGLHERTITSGHIGYTLAPRLNAAGRV 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     LL++DD+   E +A +L+  N+ R+ +E  + E A   V  Q        V 
Sbjct: 292 THATRAVELLVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKA--DYVT 349

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +V G+ WHPG++G++A+RL E+F +P+  IS  + G G GS RSI+GF+I   +     E
Sbjct: 350 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 406

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            IL++ GGH+ AAG +++      L     K+   +V A    PV  ID  L    +++ 
Sbjct: 407 DILLQFGGHSAAAGFSIDANRIDELRYRLTKYCKEVVTAEEYIPVVAIDAELPVDDIDVD 466

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
           +ID +    PYG  N  PVFA     +Q I ++     H ++ F + +  TL AIA+   
Sbjct: 467 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNG-TLDAIAWNCP 525

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                 F     G  + V   L  N W+G    QL +    P+      
Sbjct: 526 DL----FRSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPLTEEPIK 570


>gi|327403455|ref|YP_004344293.1| single-stranded-DNA-specific exonuclease RecJ [Fluviicola taffensis
           DSM 16823]
 gi|327318963|gb|AEA43455.1| single-stranded-DNA-specific exonuclease RecJ [Fluviicola taffensis
           DSM 16823]
          Length = 574

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/586 (28%), Positives = 275/586 (46%), Gaps = 28/586 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W          +   +     +  I+A +L  RN++     + F  P I  L  DP +
Sbjct: 3   KHWFIKQVPSD-EKIQVVIDNLKVSPIMASLLAQRNLTSLPQIRSFFTPEISSLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + + ++A  R+  A+ N E+I+IFGDYDVDG  +VAL+   L   + + + YIPDR  +G
Sbjct: 61  MLNMNRAVDRLESAVQNQERILIFGDYDVDGTTAVALVYSVLKEFT-SVDFYIPDRYEEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++  +  G  L+I +DCG    + + YA  +G+DVI+ DHH     ++P   +
Sbjct: 120 YGLSYQGIDLALKNGCSLMIALDCGIKEIEKVAYAREKGLDVIICDHHN-PGPKVPDGII 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P + D       LC  GV F ++   +    +D        L   LDLVA+A   D+V
Sbjct: 179 LDPKQEDCAYPFKELCGCGVGFKLMQAWFSKTGKD-----ATTLFQYLDLVAIAIGADIV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR    +G+ +       G+ AL+E+   S P+   N+ + I P INA GR+   
Sbjct: 234 PVTGENRILCKQGIQMLNENPRAGILALVEQAKRSFPLDLSNVVFTIAPRINAAGRLKSG 293

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LL+S+  +E +++A+++D  N  RR++++ + E+A   +      + + S  VV 
Sbjct: 294 SRAVELLLSETPKEAQLIALEIDEYNSERRILDAQITEEALDLIAQDDLFLSRKST-VVF 352

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WH G+VG++A+RL E   RP+  ++ E  G+  GS RS+ GF++   ++    E +L
Sbjct: 353 QSDWHKGVVGIVASRLIEHHYRPTIVLT-ENKGEATGSARSVSGFNVYDAITSC--EHLL 409

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV------ 488
            + GGH  AAGL++   N     + F  +    +  L       ID  +  S +      
Sbjct: 410 TQYGGHQHAAGLSLPLENVASFREHFDSYVQKNIQPLDEVEELVIDLEIGLSELFLAGES 469

Query: 489 ---NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAI 544
                 L  MLE   P+G GN  PVF   N      R++  AHL+       S   L AI
Sbjct: 470 ALQIPRLYKMLEQMEPFGPGNDKPVFCAKNMYADKTRILKEAHLKFDLVDPISRIQLSAI 529

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F +      +  + + G        L  N W      QL++ D  
Sbjct: 530 GFNMAD----KADLIAAGCAFDCAFTLEKNVWNNRATLQLQIRDVR 571


>gi|261342295|ref|ZP_05970153.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315636|gb|EFC54574.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter
           cancerogenus ATCC 35316]
          Length = 577

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/566 (30%), Positives = 277/566 (48%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++
Sbjct: 21  DLPPLLKRLYASRGVKSAED---LERSVKGMLP-WQQLSGVEKATEMLYNAFREGTRIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     +     +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLSLRALGCDNVAYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDRAHALGIPVLVTDHHLPGDTLPDAEAIINPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +  +LR             +L   LDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTLLRDKGWFESRGIAVPNLAEYLDLVALGTVADVVPLDTNNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPLKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSGDTLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLHTLHPNLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L A+ + +    ML  AGP+G   P
Sbjct: 437 LEEAKFDEFQRLFGEMVTAWIDPALLHGEVVSDGELPAADMTMETAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRIVGERHLKVMVEPVGGGPLLDGIAFNVDTSVWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + +  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|322831508|ref|YP_004211535.1| single-stranded-DNA-specific exonuclease RecJ [Rahnella sp. Y9602]
 gi|321166709|gb|ADW72408.1| single-stranded-DNA-specific exonuclease RecJ [Rahnella sp. Y9602]
          Length = 577

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+ + R V+       L   +R ++P    L   D A   + +A+    +I+I 
Sbjct: 22  LSPLLRRLYLARGVTQSQE---LERGVRGMLPY-QQLDGIDTAVALLQKALAERLRIIIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+  + GA+LI+TVD
Sbjct: 78  GDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V++ DHH        A A++NPN +        L   GV F 
Sbjct: 138 NGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+      N     +L   LDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G++AL+E        + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +   
Sbjct: 258 GKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA  LD LNQ RR +E  M  +A A     +         + +    WH G+VG+LA+RL
Sbjct: 318 LASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASRL 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRSI G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F    D F       +       V   DG L+A  + I   +ML   GP+G   P 
Sbjct: 438 EESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDGGPWGQAFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   +++   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGR-FRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPD----SSIREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYRLDINEFRGNRSVQLIIEHLWP 576


>gi|149377063|ref|ZP_01894813.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter
           algicola DG893]
 gi|149358599|gb|EDM47071.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter
           algicola DG893]
          Length = 577

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/566 (31%), Positives = 292/566 (51%), Gaps = 21/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ D    +   +++ L   P+ L   D+A   + +AI + +++++
Sbjct: 21  NLPPLLRRLYAARGVTSDDQLSY---TLKHL-ASPMDLRGVDRAVALLAEAITDQQRVLV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEG--AQLII 154
            GD+D DGA S A+ M  L    + + +  +P R  DGYG  P ++ +  +EG    L++
Sbjct: 77  LGDFDADGATSTAVAMLGLGMLGLNDIDFRVPSRFSDGYGLTPGIIHRLRDEGALPDLLV 136

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G ++ + ++ A   GI V+V DHH        A A+VNPN+        +    GV
Sbjct: 137 TVDNGISAVEGVRVARELGIRVVVTDHHLAGETLPDADAIVNPNQPGCPFLSKNAAGVGV 196

Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +F VL  + + LR+   +P    +L +LLDLVAL TV DVVPL   NR +V +GL   R+
Sbjct: 197 MFYVLTALRKHLREQGLLPEPQPNLGNLLDLVALGTVADVVPLDHNNRIFVEQGLRRIRQ 256

Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG+ AL+E        I++ +LG+++GP +NA GR+ + ++G   L+SD   E + 
Sbjct: 257 GEARPGILALLEVAGRDHTEISSTDLGFVVGPRLNAAGRLDDMSVGIACLLSDSRDEAQR 316

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390
           LA +LD  N+ RR +E  M  QA+  + +   DI+       +    WH G++G+LAAR+
Sbjct: 317 LARELDTFNRERRTIEKDMKTQAQDLLASMSLDIEGLPWGLALFDTDWHQGVIGILAARI 376

Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +E+  RP+ A + +++G+   GS RSI G  I  +++   A   G++ K GGHAMAAG+T
Sbjct: 377 REQTHRPTIAFAPDDNGEDIKGSARSIPGLHIRDVLAAVDARHPGMMKKFGGHAMAAGMT 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           + R +     D F +   + + A         DG L+   +++    +L+ AGP+G   P
Sbjct: 437 LSRGDLDAFSDAFDRAVRDTLRAEDLEAAITTDGPLSPDELHLETATLLKRAGPWGQHFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   N ++ S R+V   HL++  +  +  + +  IAF       G  +         
Sbjct: 497 EPLFDG-NFRVVSQRIVGENHLKLVLQPEEGGDIIDGIAFNT-----GPEVPDYTKTGAR 550

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           V      N +RG    QL V    P+
Sbjct: 551 VVYKPDANTFRGRTNLQLMVDYLEPL 576


>gi|161615989|ref|YP_001589954.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161365353|gb|ABX69121.1| hypothetical protein SPAB_03789 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 577

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---HELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|78222077|ref|YP_383824.1| RecJ exonuclease [Geobacter metallireducens GS-15]
 gi|78193332|gb|ABB31099.1| exonuclease RecJ [Geobacter metallireducens GS-15]
          Length = 578

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/578 (30%), Positives = 279/578 (48%), Gaps = 18/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW           A  I    ++   +A +L NR +   + A+ FL+ S+   + DP +
Sbjct: 7   KRWELRT--NDKEAAQRIASDSSVDPFLAALLANRGIADGESARRFLSSSLGD-VSDPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   ++A  R+  A    E + ++GDYDVDG  + AL++ F     +    +IP R+ +G
Sbjct: 64  LKGMEEAVARLCAARARRETVCVYGDYDVDGITATALLVSFFRAVGIRCFYHIPKRLEEG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   + K     AQ+++TVDCG  +    +     G+D+++ DHH        A A+
Sbjct: 124 YGLSVDGLRKVAE-QAQVVVTVDCGVNAVAEAELCLTLGVDLVITDHHTPGPAIPKACAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCD 252
           +NP +         L   GV F V+V +   LR +         +L   LDLVAL T+ D
Sbjct: 183 INPLQPGCSYPFKSLAGVGVAFNVMVALRGRLRAEGAFAGGNGPNLREYLDLVALGTIAD 242

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           VVPL+G NR +V  GL         G+KAL +   ++  ++   +G+ + P +NA GR+ 
Sbjct: 243 VVPLVGENRIFVKYGLRELSASSRVGVKALKDVAGVTGAVSCGAVGFRLAPRLNAAGRME 302

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++  G  LL+  +      +A +LD  N  R+ +E  +L  A  +V      ++    IV
Sbjct: 303 DAAAGVELLLETEPGRAAAIAAELDANNDERQALERQILTDALGRVQGN-TAMEGRKSIV 361

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WHPG++G++A+R+ + F RP+  I+ +E G G GSGRSI GF +   +    ++ 
Sbjct: 362 LASAAWHPGVIGIVASRMVDLFHRPTVLIALQE-GNGRGSGRSIPGFHLYDALGACADQ- 419

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LVK GGH  AAGL+++        D F++ A  ++ A    PV ++D VL+A  V   L
Sbjct: 420 -LVKFGGHRYAAGLSIDEPTLELFVDRFEEVAAGLLSADDLIPVLRVDAVLSAQQVTAGL 478

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            D L S  P+GAGNP P+F   + ++     V   HL++   S    T  AI F +    
Sbjct: 479 ADALSSLEPFGAGNPEPLFVLKDMEIVRRWAVRGNHLKVRL-SGGGFTFDAIGFNLATKE 537

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  S    + +   L  N W G K  QL + D  
Sbjct: 538 ------DSLPDLVDIVFTLGWNEWNGRKTLQLSLKDIR 569


>gi|260771234|ref|ZP_05880161.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio furnissii CIP
           102972]
 gi|260613831|gb|EEX39023.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio furnissii CIP
           102972]
          Length = 579

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/568 (31%), Positives = 279/568 (49%), Gaps = 25/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP ++ R+ +NR VS       L  + + L      L   D A   + +AI   ++I++ 
Sbjct: 19  IPPLLRRIYLNRGVSSVEQ---LEKAAKALHSY-QQLHGIDAAVELLFEAIKQQKRIIVV 74

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ +   A++I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVEQALAMNAEMIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +++A   G+ V+V DHH   +E   A A+VNPN          L   GV F 
Sbjct: 135 NGVSSIEGVRFAKQHGLSVLVTDHHLPGAELPAADAMVNPNLQQCAFPSKALAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LMMALCVHMRRCGWFAEQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254

Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++      
Sbjct: 255 GKARPGIQALIEVAKRDARKLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAARR 314

Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +A +LD LNQ R+ +E        A  + L    D +    +V+    WH G++G+LA+R
Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAFCERLQFGKDTELPHGLVMFQRDWHQGVIGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GS RSI G  +   +        GI++K GGHAMAAGLT
Sbjct: 375 IKEQFHRPVIAFADGGDGLIKGSCRSIPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E  NF R    F +     +   +   V   DG L     ++ + +ML + GP+G   P
Sbjct: 435 IEEHNFERFSRLFDEVVRQDLDDALLKGVILTDGELAPEEFSMHVAEMLRAGGPWGQAFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            PVF     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 495 EPVFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 549

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL V    
Sbjct: 550 KTVRLAYKLDINEFRGNQSLQLMVDHLE 577


>gi|332558849|ref|ZP_08413171.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides WS8N]
 gi|332276561|gb|EGJ21876.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides WS8N]
          Length = 583

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 237/599 (39%), Positives = 337/599 (56%), Gaps = 36/599 (6%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S +G RWV    +E    A A+ Q   +P  + R LV R V    A+ FL P
Sbjct: 7   RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L+PDPL L D   AA R++QA+   E+I IF DYDVDG +S AL++ +L      A
Sbjct: 66  ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRTA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M+        LI+ VDCG+ S++ +  A  +G DV+V+DHH 
Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+    GHLCAA VVFL+LV   R LR +       DL+++LD
Sbjct: 183 GAETLPPALAVVNPNRQDEDGALGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PL G+NRA V +GL V  R+  PGL AL +   + +   +  LG+++GP
Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL ++D +E + LA +LD LN  RR +E+ + E+A A+   +  
Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                 ++    + WHPG+VG++AARLKE   RP+  I   E+G G GSGRSI G D+G 
Sbjct: 361 SG---PLVWAAAEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTVE        +   +       A       ++DG+L
Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476

Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
             SA     ++ ++                         FA  + ++   R +   H+++
Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T    +   L+A+AF  +  PLG  L      R H+ G L ++ W GS R Q+R+ DA+
Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581


>gi|221639835|ref|YP_002526097.1| Single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides KD131]
 gi|221160616|gb|ACM01596.1| Single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides KD131]
          Length = 583

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 237/599 (39%), Positives = 336/599 (56%), Gaps = 36/599 (6%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S +G RWV    +E    A A+ Q   +P  + R LV R V    A+ FL P
Sbjct: 7   RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L+PDPL L D   AA R++QA+   E+I IF DYDVDG +S AL++ +L      A
Sbjct: 66  ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRTA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M+        LI+ VDCG+ S++ +  A  +G DV+V+DHH 
Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+    GHLCAA VVFL+LV   R LR +       DL+++LD
Sbjct: 183 GAETLPPALAVVNPNRQDEDGSLGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PL G+NRA V +GL V  R+  PGL AL +   + +      LG+++GP
Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNGYALGFLLGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL ++D +E + LA +LD LN  RR +E+ + E+A A+   +  
Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                 ++    + WHPG+VG++AARLKE   RP+  I   E+G G GSGRSI G D+G 
Sbjct: 361 SG---PLVWAAAEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTVE        +   +       A       ++DG+L
Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476

Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
             SA     ++ ++                         FA  + ++   R +   H+++
Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T    +   L+A+AF  +  PLG  L      R H+ G L ++ W GS R Q+R+ DA+
Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581


>gi|170725260|ref|YP_001759286.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella woodyi
           ATCC 51908]
 gi|169810607|gb|ACA85191.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella woodyi
           ATCC 51908]
          Length = 574

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/563 (29%), Positives = 281/563 (49%), Gaps = 21/563 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ ++  +R  +        + +++ L+  P  +    +AA  I  AI     I+I 
Sbjct: 20  LSPLLKQIYASRGSTAADC----DLALKRLLR-PDTMMGLPRAAEIIADAIMAQRSILIM 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S  + +  L        +  IP+R   GYG +P ++    ++GA+L+ITVD
Sbjct: 75  GDFDADGATSTCVCLLALKMMGATRVDYLIPNRFDFGYGLSPEIVAVAQDKGAELLITVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + ++ A + G+ V++ DHH        A A+VNPN++D       +   GV F 
Sbjct: 135 NGISSIEGVEAAKSLGMQVVITDHHLPGKTIPNADAIVNPNQVDCSFASKSIAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LR  N          +L  LLD+VAL TV DVV L G NR  V  GL   R 
Sbjct: 195 LMSALRAELRSRNWYQEQGIAEPNLAQLLDIVALGTVADVVALDGNNRILVEAGLQRVRA 254

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+ AL+E    +   I A + G+ +GP +NA GR+ E +LG   L+ DD      
Sbjct: 255 GRCRPGITALLEVAKRNPSRIVASDFGFAVGPRLNAAGRLDEMSLGVETLLCDDMMTARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E+ M ++A   +   + ++ +    I +  + WH G++G+LA+R+
Sbjct: 315 MASELDGLNAERRDLEADMQQEALKSLEKLELNEAELPWGIALFKEDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448
           K+++ RP  A +   +G+  GS RSI+G  +  ++    +   G+++K GGHAMAAGL++
Sbjct: 375 KDRYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLSL 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              +F +    + +    ++     T     DG L    + + +   L +AGP+G   P 
Sbjct: 435 LEKDFYKFEQAYDEGVRELLKPEQLTGEMTTDGELTPDEMTLPMAWELRNAGPWGQEFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     K+   R+V   HL++  E++  +  L  IAF V  T   +  ++       V
Sbjct: 495 PLFDGY-FKVVQQRIVGEKHLKLVLETECGKLMLDGIAFNVDMTTWPDATIEHA----RV 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L VN +RG++  QL V    
Sbjct: 550 VYKLDVNEFRGNQTLQLMVDQIE 572


>gi|156973277|ref|YP_001444184.1| ssDNA exonuclease RecJ [Vibrio harveyi ATCC BAA-1116]
 gi|156524871|gb|ABU69957.1| hypothetical protein VIBHAR_00958 [Vibrio harveyi ATCC BAA-1116]
          Length = 579

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/566 (31%), Positives = 280/566 (49%), Gaps = 25/566 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+ +NR ++       L  S R L      L   D+A   + QAI   ++I++
Sbjct: 18  SIPAILKRIYINRGITD---VAQLETSARGLHSY-QQLGGIDQAVELLFQAINEQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ +  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVYMRKQNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   ++ +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEKF RP  A +   +G   GS RSI G  +   + F      G+++K GGHAMAAGL
Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       V   DG L     ++ + + L S GP+G   
Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVL 587
            K + +   L VN +RG++  QL + 
Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMID 574


>gi|126462820|ref|YP_001043934.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104484|gb|ABN77162.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 583

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 237/599 (39%), Positives = 338/599 (56%), Gaps = 36/599 (6%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S +G RWV    +E    A A+ Q   +P  + R LV R V    A+ FL P
Sbjct: 7   RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L+PDPL L D   AA R++QA+   E+I IF DYDVDG +S AL++ +L     +A
Sbjct: 66  ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRSA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M+        LI+ VDCG+ S++ +  A  +G DV+V+DHH 
Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+    GHLCAA VVFL+LV   R LR +       DL+++LD
Sbjct: 183 GAETLPPALAVVNPNRQDEDGALGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PL G+NRA V +GL V  R+  PGL AL +   + +   +  LG+++GP
Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL ++D +E + LA +LD LN  RR +E+ + E+A A+   +  
Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                 ++    + WHPG+VG++AARLKE   RP+  I   E+G G GSGRSI G D+G 
Sbjct: 361 SG---PLVWAAAEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTVE        +   +       A       ++DG+L
Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476

Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
             SA     ++ ++                         FA  + ++   R +   H+++
Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T    +   L+A+AF  +  PLG  L      R H+ G L ++ W GS R Q+R+ DA+
Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581


>gi|77463976|ref|YP_353480.1| single-stranded DNA-specific exonuclease [Rhodobacter sphaeroides
           2.4.1]
 gi|77388394|gb|ABA79579.1| probable single-stranded DNA-specific exonuclease [Rhodobacter
           sphaeroides 2.4.1]
          Length = 583

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 238/599 (39%), Positives = 339/599 (56%), Gaps = 36/599 (6%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +AFLGVE S +G RWV    +E    A A+ Q   +P  + R LV R V    A+ FL P
Sbjct: 7   RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           ++R L+PDPL L D   AA R++QA+   E+I IF DYDVDG +S AL++ +L     +A
Sbjct: 66  ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRSA 125

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
            +YIPDRI +GYGPN   M+        LI+ VDCG+ S++ +  A  +G DV+V+DHH 
Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                 PA A+VNPNR D+    GHLCAA VVFL+LV   R LR +       DL+++LD
Sbjct: 183 GAETLPPALAVVNPNRQDEDGALGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATV DV PL G+NRA V +GL V  R+  PGL AL +   + +   +  LG+++GP
Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP 300

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NAGGRIG+++LG+RLL ++D +E + LA +LD LN  RR +E+ + E+A A+   +  
Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                 ++   G+ WHPG+VG++AARLKE   RP+  I   E+G G GSGRSI G D+G 
Sbjct: 361 SG---PLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     EG+L+KGGGH MAAGLTVE        +   +       A       ++DG+L
Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476

Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
             SA     ++ ++                         FA  + ++   R +   H+++
Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           T    +   L+A+AF  +  PLG  L      R H+ G L ++ W GS R Q+R+ DA+
Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581


>gi|262089692|gb|ACY24787.1| RecJ single-stranded-DNA-specific exonuclease [uncultured organism]
          Length = 578

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/571 (31%), Positives = 274/571 (47%), Gaps = 25/571 (4%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM-PDPLILTDCDKAARRIVQAIYNSEK 94
           + AI  ++ R+   R V  +     L   +  L  P+        +A   +  A+    K
Sbjct: 17  QTAIHPLLQRIYSARGVQHE---RELQYQLANLHKPN---FKGLAEAVSLLADAVVAQAK 70

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           I+I GD+D DGA S AL +  L    + N +  +P+R   GYG  P ++     +   +I
Sbjct: 71  IIIVGDFDADGATSSALAVLALRAMGLHNVDFLVPNRFEYGYGLTPEIVAVAAAQQPDVI 130

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           ITVD G +S + +  A   GI VIV DHH   SE   A A+VNPN+        HL   G
Sbjct: 131 ITVDNGISSIEGVLAARELGIAVIVTDHHLPGSELPEADAIVNPNQPGCEFPSKHLAGVG 190

Query: 214 VVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
           V+F V+  +   LRQ            ++ S LDLVAL TV DVVPL   NR  V +GL 
Sbjct: 191 VIFYVMNALRAELRQMGWFEESGIAEPNMASFLDLVALGTVADVVPLDYNNRILVAQGLQ 250

Query: 270 VARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R     PG+KA++E      + + A + G+ +GP +NA GR+ + +LG + L+ +   
Sbjct: 251 RIRAGVCRPGIKAMLEVSGKQANKLVASDFGFALGPRLNAAGRLDDMSLGIQCLMCESEN 310

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGL 385
               +A ++D LN++R+ +E+ M ++A A +    Q D       + +  + WH G++G+
Sbjct: 311 LAREMAAQMDELNRDRKAIETGMQQEAMAMLQKTLQADAESLPWGVCLFDETWHQGVIGI 370

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMA 443
           LA+R+K+K+ RP+   +   +G+  GS RS+ GF I   +    A   G+L K GGHAMA
Sbjct: 371 LASRIKDKYHRPTIVFADVGEGEIKGSARSVPGFHIRDALDAVAARNPGLLQKFGGHAMA 430

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
           AG+++ R NF      F       +       V   DG L A   ++ +   L  AGP+G
Sbjct: 431 AGMSLTRANFAAFAQAFDDEVRRQLTTDDLQAVVVSDGELAAQDFSLQIATQLREAGPWG 490

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES--QDSETLQAIAFRVYGTPLGEFLMQSR 561
              P PVF      +   ++V + HL+MT     Q    + AIAF +            +
Sbjct: 491 QHFPEPVFDGE-FYVLQQKLVGVKHLKMTLAHDAQGQHIVDAIAFNID----PALWPNPQ 545

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            K++ V   L +N +RG+   QL V      
Sbjct: 546 AKKVRVAYKLDINEFRGNTTVQLLVDYLELA 576


>gi|168261796|ref|ZP_02683769.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349010|gb|EDZ35641.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 577

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|168242829|ref|ZP_02667761.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194451392|ref|YP_002047026.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|198243236|ref|YP_002217019.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388885|ref|ZP_03215497.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928204|ref|ZP_03219404.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|194409696|gb|ACF69915.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197937752|gb|ACH75085.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605983|gb|EDZ04528.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322526|gb|EDZ07723.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205338091|gb|EDZ24855.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|326624787|gb|EGE31132.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 577

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|283835348|ref|ZP_06355089.1| single-stranded-DNA-specific exonuclease RecJ [Citrobacter youngae
           ATCC 29220]
 gi|291068513|gb|EFE06622.1| single-stranded-DNA-specific exonuclease RecJ [Citrobacter youngae
           ATCC 29220]
          Length = 577

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L   ++ ++     LT  +KA   +  A   + +IM+
Sbjct: 21  DLPPLLRRLYASRGVRTAND---LERGLKGMLH-WQTLTGVEKAVEMLHDAFEKNLRIMV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N     +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLSLRAMGCNTVEYLVPNRFEDGYGLSPEVVDQVHARGAQMIMTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHAHALGICVLVTDHHLPGEILPNADAIVNPNLADCPFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++++   L+              ++  LDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLVLCNHLKSKGWFDARGIAVPKIVEYLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 RQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGVCRPGIKALLEIANREPAKLVASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHPGMILKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F R    F +     +   +       DG L+A+ + + +  ML  AGP+G   P
Sbjct: 437 LEEAQFERFQQRFGELVTEWLDPALLQGEVVSDGPLSAAEMTMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSCWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + +  PV
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPV 577


>gi|323495871|ref|ZP_08100939.1| ssDNA exonuclease RecJ [Vibrio sinaloensis DSM 21326]
 gi|323319087|gb|EGA72030.1| ssDNA exonuclease RecJ [Vibrio sinaloensis DSM 21326]
          Length = 578

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/568 (30%), Positives = 280/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +I  ++ R+  +R ++       L  + R L      L   D A   + +A+   ++I++
Sbjct: 18  SIAPLLKRIYASRGITSPEQ---LETAARALHSY-QKLHGIDAAVELLFEAVSQQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ I+ GAQ+I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIDIGAQVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  QG+ V+V DHH    E     A+VNPN  +       L   GV F
Sbjct: 134 DNGVSSIEGVRYAKEQGLKVLVTDHHLPGHELPNVDAMVNPNLQECAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKTGWFSQQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL++++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMANNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     Q  +      +V+    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEQDMPHGLVLFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEKF RP  A +   +G   GS RSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 374 IKEKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDTLDRIDTQNPGLIIKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F R    F +     +       V   DG L     ++ + +ML + GP+G   P
Sbjct: 434 ILEKDFERFSKLFDEAVKQDLDEAALKGVILSDGELKPEEFSMHVAEMLRAGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL +    
Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLMIDHIE 576


>gi|110679772|ref|YP_682779.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455888|gb|ABG32093.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter denitrificans OCh 114]
          Length = 579

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 244/597 (40%), Positives = 337/597 (56%), Gaps = 33/597 (5%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
           +FLG+E S++G RW+     E    A  + Q+  +P  V +VL  R V  ++A+ FL P+
Sbjct: 2   SFLGIERSLTGRRWIG-PSVEIARAAKTLEQRTDLPAPVCQVLARRGVQAEHAEGFLAPA 60

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R LMPDP  L D  KAA R + A+   EKI IF DYDVDG +S AL++ +L      A 
Sbjct: 61  LRDLMPDPRSLKDMTKAATRFLNAVQKREKIAIFADYDVDGGSSAALLLAWLRQMGREAT 120

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
           +YIPDRI +GYGPN   M +       LI+ VDCG+ S+  +  A   G DV+V+DHH  
Sbjct: 121 LYIPDRIDEGYGPNDEAMAQLAR-SHDLIVCVDCGTLSHGPI--AAAAGADVLVLDHHLG 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
             E   A A+VNPNR D+    GHLCAAGVVFL+LV + R+LR+  +     DL++ LDL
Sbjct: 178 TEELPDALAVVNPNRQDESGDLGHLCAAGVVFLLLVELRRLLRETGQ--TGPDLMAFLDL 235

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           VALATV DV PL+G+NRA+V +GL V  R+   GL AL +   + +   A +LG+++GP 
Sbjct: 236 VALATVADVAPLVGVNRAFVRQGLKVLARRERVGLTALADVAGVDTEPNAYHLGFILGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGRIG ++LG+RLL SDD  E   LA +LD LN  RR +E+A+   A A+   +  D
Sbjct: 296 VNAGGRIGAADLGARLLASDDPHEAAALAERLDKLNTERRDIEAAVRATALAQAEARGLD 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                ++   G  WHPG+VG++A+RLKE  GRPS  I   + G G GSGRS+ G D+G+ 
Sbjct: 356 ---RPLVWAAGADWHPGVVGIVASRLKEAAGRPSIVIGITD-GIGKGSGRSVAGIDLGQP 411

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +     EG+L+KGGGH MAAGLTVE            +         I      IDG+L 
Sbjct: 412 IHRLAAEGLLLKGGGHKMAAGLTVEESKIEPAMARLSELLEKQGAGSIGAADLHIDGMLM 471

Query: 485 ASAVNIALIDMLES-----------AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
             A  + L+  +E                        +AF +  ++  + V   HL+++F
Sbjct: 472 PQAAAVELVQKIEQAGPFGAAAPAP-----------RYAFADVAIRYAKRVGENHLKISF 520

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            S    ++ AI F  Y T LG  L    G R H+ G L +N WRG +  QLR+ DA+
Sbjct: 521 GSDAG-SMDAICFGAYDTELGPALEMHGGARFHLAGRLDINTWRGRQSVQLRLEDAA 576


>gi|167765282|ref|ZP_02437395.1| hypothetical protein BACSTE_03670 [Bacteroides stercoris ATCC
           43183]
 gi|167696910|gb|EDS13489.1| hypothetical protein BACSTE_03670 [Bacteroides stercoris ATCC
           43183]
          Length = 582

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/582 (28%), Positives = 273/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLLGQEGINRA-LAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W  L        A   + Q+  I  ++ R+LV R ++    AK F  P +  L  DP +
Sbjct: 15  KWNYLPITSDQAEASQRLAQELGISPVLGRLLVERGITTATAAKKFFRPQLPDLY-DPFL 73

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 74  MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 133

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  +GID I+ DHH       PA A+
Sbjct: 134 YGVSTQGVDYASETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAVAI 193

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 194 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 248

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 249 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 308

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 309 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKTMTEEA-NQIVAGLEGLADRRSIVL 367

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 368 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 424

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F++F    +    T+ V  I+  ++   +     
Sbjct: 425 LENFGGHTYAAGLSMKVENVPAFTERFEEFVSRHILPEQTSAVIDINAEIDFRDITPKFC 484

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   N     + +VV     H+++     + +  +  IAF   
Sbjct: 485 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 544

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 545 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 581


>gi|153214105|ref|ZP_01949239.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           1587]
 gi|124115531|gb|EAY34351.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           1587]
          Length = 584

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582


>gi|229846244|ref|ZP_04466356.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 7P49H1]
 gi|229811248|gb|EEP46965.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 7P49H1]
          Length = 575

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFADVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574


>gi|262170637|ref|ZP_06038315.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           MB-451]
 gi|261891713|gb|EEY37699.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           MB-451]
          Length = 584

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/568 (31%), Positives = 276/568 (48%), Gaps = 25/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ R+ +NR V        L  + + L      L   ++A   +  AI   ++I++ 
Sbjct: 24  IAPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGIERAVELLFAAIAEQKRIIVV 79

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TVD
Sbjct: 80  GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 139

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F 
Sbjct: 140 NGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 199

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 200 LMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 259

Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++      
Sbjct: 260 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 319

Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+R
Sbjct: 320 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 379

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGLT
Sbjct: 380 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 439

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E  NF R C  F       +       +   DG L     ++   +ML + GP+G   P
Sbjct: 440 IEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTAEMLRAGGPWGQAFP 499

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 500 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----ASV 554

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL +    
Sbjct: 555 KTVRLAYKLDINEFRGNQSLQLMIDHIE 582


>gi|153802796|ref|ZP_01957382.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MZO-3]
 gi|124121661|gb|EAY40404.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           MZO-3]
          Length = 584

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S +  +YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGGRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582


>gi|168231147|ref|ZP_02656205.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468598|ref|ZP_03074582.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194470621|ref|ZP_03076605.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205353966|ref|YP_002227767.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858305|ref|YP_002244956.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238909841|ref|ZP_04653678.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|194454962|gb|EDX43801.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456985|gb|EDX45824.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205273747|emb|CAR38742.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205334591|gb|EDZ21355.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|206710108|emb|CAR34463.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326629080|gb|EGE35423.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 577

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPEAEAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|229521246|ref|ZP_04410666.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TM
           11079-80]
 gi|229341778|gb|EEO06780.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TM
           11079-80]
          Length = 584

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIAPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582


>gi|325954900|ref|YP_004238560.1| single-stranded-DNA-specific exonuclease RecJ [Weeksella virosa DSM
           16922]
 gi|323437518|gb|ADX67982.1| single-stranded-DNA-specific exonuclease RecJ [Weeksella virosa DSM
           16922]
          Length = 568

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/581 (29%), Positives = 273/581 (46%), Gaps = 20/581 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW  L  Q      L + Q   +P+ +A +L+ R + + D AK +  PS+  L  DP ++
Sbjct: 4   RW-LLEPQPKEEDVLHMEQLINVPEALAVILLQRGINTFDLAKAYFRPSLEKLH-DPFLM 61

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A  R+ +AI N E I+I+GDYDVDG  +V L+  +LS+   N + YIPDR  +GY
Sbjct: 62  KDMDVAIDRLQKAIRNQENILIYGDYDVDGTTAVTLVYEYLSNYYSNLSYYIPDRYKEGY 121

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D ++YA  +GID I+ DHH    +   A A++
Sbjct: 122 GVSVQSIDFAHDNDVSLIIALDCGIKALDKIEYAKTKGIDYIICDHHLPGKDIPNAVAVL 181

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       L   GV F ++                  L  L DL+A++   D+VP
Sbjct: 182 DPKRKDCPYPYKELSGCGVGFKLMHAFAMH-----NQLPFDTLEPLFDLLAVSIAADIVP 236

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR     GL        PG   +I   NI   +   NL + I P INA GRI  + 
Sbjct: 237 ITGENRILAYFGLKRINENPRPGFAKMIP-DNIQKNLNISNLVFTIAPKINAAGRIEHAY 295

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              RL++S D  E      K+  LN+ RR ++S + + A  ++     D       VV  
Sbjct: 296 DAVRLMLSSDDYEAVKYLNKIKKLNERRRDLDSDITDGAIEQLSE--IDHSLNYTTVVYD 353

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             W+ G++G++A+RL + + +P+   +   DG+ + S RS++GFD+ + ++       L 
Sbjct: 354 PEWNKGVIGIVASRLVDLYYKPTLVFTKGNDGELVASARSVKGFDLYQALNL--NSQFLE 411

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  AAGLT++  NF    + F++   N +      P  +ID  +    ++ +   +
Sbjct: 412 KFGGHMAAAGLTLKEENFLAFRESFEETVKNSIQESQRIPTIEIDKEIKLKEISSSFKKI 471

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSE-TLQAIAFRVYGTP 552
           L   GP+G  N NP F   +     +R +     HL+     +    T  AI F++  T 
Sbjct: 472 LHQMGPFGPENMNPTFLSKDLVATDVRAMGKDGEHLRFLVHQRSERMTFTAIGFKLGNTK 531

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
               L    G        L  NYW+G    Q+ + D    E
Sbjct: 532 DKLIL----GVPFDAVYTLEQNYWQGKATWQMNIKDIRFHE 568


>gi|330807717|ref|YP_004352179.1| single-stranded-DNA-specific exonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375825|gb|AEA67175.1| Putative single-stranded-DNA-specific exonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 569

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/562 (32%), Positives = 280/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   D A   +V A+   ++I+I
Sbjct: 17  DLPPLLTRLYAARGVQSE---AELDKSLARLIP-FQQLKGIDAAVDLLVTALEQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + M  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALAREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR           ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGWYASTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG+KA++E      S IT+ +LG+++GP +NA GR+ + +LG   L+++D      +
Sbjct: 253 RARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTNDPALAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD +NQ+R+ +E  M  +A A++     +      + +   +WH G++G+LA+R+KE
Sbjct: 313 AAQLDGMNQDRKSIEQGMQREALAQLKDLPVE-SMPFGLCLFDPQWHQGVIGILASRMKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG   GSGRS+ GF I   +S   A    ++ K GGHAMAAGLT+  
Sbjct: 372 RYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F       +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 ANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPM 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   RVV   HL++  +S+  S  L  IAF +      E       + + +  
Sbjct: 492 FHGL-FQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDR----EIWPNPTVRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG +  QL +    P
Sbjct: 547 KLDLNEFRGQETVQLMIAHIEP 568


>gi|262404728|ref|ZP_06081283.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC586]
 gi|262349760|gb|EEY98898.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC586]
          Length = 579

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/588 (29%), Positives = 280/588 (47%), Gaps = 30/588 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
           +       ++          I  ++ R+ +NR V        L  + + L      L   
Sbjct: 4   IQRRPDPDLSLLPD-----HIDPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGI 54

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGP 137
           ++A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +P+R  DGYG 
Sbjct: 55  ERAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGL 114

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +P ++++ I  GA++I+TVD G +S + ++YA  +G+ V+V DHH    +     A+VNP
Sbjct: 115 SPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQQLPEVDAMVNP 174

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDV 253
           N          L   GV F +++ +   +RQ             L+ L+DLVAL TV DV
Sbjct: 175 NLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADV 234

Query: 254 VPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           VPL   NR  V +GL   R     PG++ALIE        + A + G+ +GP INA GR+
Sbjct: 235 VPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRL 294

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQAS 369
            + + G  LL+ ++      +A +LD LNQ R+ +E        A  + L   DD +   
Sbjct: 295 DDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPY 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA- 428
            +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G  +   +    
Sbjct: 355 GLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKID 414

Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
               GI++K GGHAMAAGLT+E  NF R C  F +     +       +   DG L    
Sbjct: 415 TQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQVVREELDEAALKGIILSDGELKPEE 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQ 542
            ++   ++L + GP+G   P P+F     K+   ++V   HL++  E        +  + 
Sbjct: 475 FSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMID 533

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            IAF V      +    +  K + +   L +N +RG++  QL +    
Sbjct: 534 GIAFNVDLRRWPD----ASVKTIRLAYKLDINEFRGNQSLQLMIDYLE 577


>gi|229528598|ref|ZP_04417988.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           12129(1)]
 gi|229332372|gb|EEN97858.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           12129(1)]
          Length = 584

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF   C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFEHFCRLFDQLVREELDEAALQGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582


>gi|237807748|ref|YP_002892188.1| single-stranded-DNA-specific exonuclease RecJ [Tolumonas auensis
           DSM 9187]
 gi|237500009|gb|ACQ92602.1| single-stranded-DNA-specific exonuclease RecJ [Tolumonas auensis
           DSM 9187]
          Length = 575

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/560 (31%), Positives = 280/560 (50%), Gaps = 19/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP  + ++  +R +        LN S   L+  P  L    +A   +  A+    +I+I
Sbjct: 20  DIPARLRQIYASRGIKHADE---LNRSASSLL-SPQGLKGLPQALELLTDALQQQRRIVI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ALMM  L           +P+R   GYG +P ++     + A+L+ITV
Sbjct: 76  VGDFDCDGATSTALMMLALRAMGAQQVAYLVPNRFEYGYGLSPEIVMLAAQQKAELLITV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   ++ A  QG+ V++ DHH   +E   A A+VNPN+L    G G+L   GV F
Sbjct: 136 DNGISSIAGVETARQQGMKVLITDHHLPGAELPQADAIVNPNQLGCQFGSGNLAGVGVAF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   L+Q            ++   LDLVAL TV DVV L   NR  V +GL   R
Sbjct: 196 YLMAALRSHLQQLGWFAQQNITAPNVADYLDLVALGTVADVVALDNNNRILVHQGLQRIR 255

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+KAL +      S +TA +LG+ +GP +NA GR+ +  +G   L+S+D     
Sbjct: 256 AGRCRAGIKALCDVAGRDLSRLTASDLGFFLGPRLNAVGRLDDMTMGIACLLSNDDHVAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA ++D LNQ R+++E +M  +A+A +   +  + +  + +V+  D WH G+VGL+A+R
Sbjct: 316 HLASQMDSLNQERKVIEGSMQLEAQATLSRLKSLEGELPAALVLHQDDWHQGVVGLVASR 375

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE++ RP FA +   + +  GSGRSI G  +   +        G++ K GGHAMAAGL+
Sbjct: 376 IKEQYHRPVFAFAEAGEDELKGSGRSIPGLHMRDALERLDQLHPGLISKYGGHAMAAGLS 435

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           + + +     + F       +     T +   DG L     ++ + + L SAGP+G   P
Sbjct: 436 LPKSSLEPFRERFTALVTEWLAPEQLTGMVLTDGELFPQEFSLEMAEALRSAGPWGQAFP 495

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
            P F      L+  R+V   HL+M  E  +   L AIAF V      +    +   ++ +
Sbjct: 496 EPCFDG-VFHLRHQRLVGSKHLKMEVEVPNGPRLDAIAFNVDLARWPD----ASVGQVQL 550

Query: 568 TGHLCVNYWRGSKRCQLRVL 587
              L +N WRG +  QL V 
Sbjct: 551 VYRLDINEWRGQRSVQLLVE 570


>gi|300722129|ref|YP_003711412.1| ssDNA exonuclease, 5'-> 3'-specific, Mg-dependent [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628629|emb|CBJ89207.1| ssDNA exonuclease, 5'-> 3'-specific, Mg-dependent [Xenorhabdus
           nematophila ATCC 19061]
          Length = 579

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              ++ R+   R +        L    + L+ +   L   ++A   +V A++   +I+I 
Sbjct: 22  FHPLLRRLYAMRGIQTADE---LERGAKGLL-NYQSLNGIEQAVSLLVTALHEDWRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +R L        +  +P+R  DGYG +  ++ + + +GA LIITVD
Sbjct: 78  GDFDADGATSTALSIRALRAMGYRHLDYLVPNRFEDGYGLSVQVVGEVLKKGADLIITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+D +  A    I VIV DHH        A A++NPN +D       L   GV F 
Sbjct: 138 NGISSHDGVATAHQHDIKVIVTDHHLPGETLPAADAIINPNLVDCSFPSKALAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMSALRAELRKRAWFEQQGIPLPNLAELLDLVALGTVADVVPLDTNNRILVYQGLNRIRA 257

Query: 274 QGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
                     L      S+ + A +LG+ +GP +NA GR+ + ++G  LL++DD  +   
Sbjct: 258 GRCCAGIRALLEVSRRESTKLAASDLGFSLGPRLNAAGRLDDMSVGVALLLTDDMVQARQ 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LNQ RR +E  M ++A       +    Q    + +    WH G+VG+LA+R+
Sbjct: 318 IACELDGLNQTRREIELGMQQEALQICDQIERTHTQLPYGLAIYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSVHGLHMRDALERLDTLHPGLMLKFGGHAMAAGLSI 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F +   + + A     V   DG L    +++ + ++L   GP+G     
Sbjct: 438 EQDKFDLFQHHFSELVADWLDAAQLEGVIWSDGELTLGELSLEIAEILRDGGPWGQAFAE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           PVF     +L   R+V   HL++  E       L  IAF +      +    +  K + +
Sbjct: 498 PVFDGR-FRLLQQRIVGEKHLKVILEPLNGGPMLDGIAFNIDVNIWPD----NSVKTVEL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  QL +    P+
Sbjct: 553 AYKLDINEFRGNRNVQLLIEHIWPL 577


>gi|254291787|ref|ZP_04962572.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           AM-19226]
 gi|150422299|gb|EDN14261.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           AM-19226]
          Length = 584

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/569 (30%), Positives = 278/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF +      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNIDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582


>gi|148981821|ref|ZP_01816538.1| ssDNA exonuclease RecJ [Vibrionales bacterium SWAT-3]
 gi|145960729|gb|EDK26069.1| ssDNA exonuclease RecJ [Vibrionales bacterium SWAT-3]
          Length = 578

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/568 (30%), Positives = 281/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ V+R V+       L  + + L      L   D AA  +  AI + ++I++
Sbjct: 18  HLPDLLKRIYVSRGVNSADQ---LETAAKGLHSY-QKLGGIDAAAELLFNAIQHQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIEIGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +++A  +G++V+V DHH   SE     A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRFAKEKGLEVLVTDHHLPGSELPMVDAMVNPNLESCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+ N           L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKLNWFAERGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     +       S + +    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G   GS RSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F R    F       +       +   DG L     ++   + L + GP+G   P
Sbjct: 434 IMEKDFERFSKLFNDVVKQELGETALKGIILSDGELLPEEFSMHTAETLRAGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K +H+   L +N +RG++  QL V    
Sbjct: 549 KTVHLAYKLDINEFRGNQSLQLMVDHIE 576


>gi|161506410|ref|YP_001573522.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160867757|gb|ABX24380.1| hypothetical protein SARI_04608 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 577

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLIITV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEIANRDPQRLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|16761823|ref|NP_457440.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143310|ref|NP_806652.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213027657|ref|ZP_03342104.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
 gi|213051986|ref|ZP_03344864.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213425821|ref|ZP_03358571.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213646962|ref|ZP_03377015.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289823820|ref|ZP_06543432.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25331606|pir||AH0871 single-stranded DNA-specific exonuclease [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504125|emb|CAD02872.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138944|gb|AAO70512.1| single-stranded DNA-specific exonuclease [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 577

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/566 (31%), Positives = 280/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  D A   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     +  +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A    I VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +         +++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +    F +     +   +       DG L+A+ +++ +  +L  AGP+G   P
Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + D  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577


>gi|332880400|ref|ZP_08448074.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332681388|gb|EGJ54311.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 574

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/585 (28%), Positives = 279/585 (47%), Gaps = 22/585 (3%)

Query: 15  GFRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
            ++W       E +  A  ++++  I  I+ R+L+ RN++    AK F  PS+  L  DP
Sbjct: 2   NYKWKLEPPTPEKLEAAERLSKELNISPILGRLLIERNITTVADAKKFFRPSLTELY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            + TD DKA  R+ +A+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FMFTDMDKAVERLNKALGRKERIMVYGDYDVDGCTAVALVYKFLQQYYSNIDYYIPDRYE 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G +LII +DCG  + D + YA  +GID I+ DHH       PA 
Sbjct: 121 EGYGVSVKGIDYAYESGVKLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  R D      HL   GV F  +    +    +        L+ LLDL A++   D
Sbjct: 181 AILNAKRFDSTYPYPHLSGCGVGFKFMQAFAQSNGIE-----FSQLIPLLDLCAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLKA+I+        +T  ++ + IGP INA GRI
Sbjct: 236 IVPIMGENRILAYHGLRQLNANPSIGLKAIIDVCGLSERELTISDIIFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+  D Q    +A +++  N  R+ ++ +M E+A + ++ + D   +   I
Sbjct: 296 QNGKEAVALLVEKDYQTAHEMAEQINRYNDMRKDLDKSMTEEANS-IVEKLDKQSEQRSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WH G++G++A+RL E + RPS  ++  +     GS RS+ GFD+ K +      
Sbjct: 355 VIYNEEWHKGVIGIVASRLTEIYYRPSVVLTRTD-NLATGSARSVSGFDVYKAIESC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+ +    +    T+ +  ID  ++   +   
Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFHRRFEAYVETHILPEQTSAILNIDAQIDFKDITHK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
               L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF 
Sbjct: 472 FHHDLKKFNPFGPDNTKPLFCTQHVYDYGTSKVVGREQEHIKLELVDNKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +       +   +   +  N  +     QL++ D  P 
Sbjct: 532 QS----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIRPS 571


>gi|261250249|ref|ZP_05942825.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio orientalis
           CIP 102891]
 gi|260939365|gb|EEX95351.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio orientalis
           CIP 102891]
          Length = 577

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/566 (31%), Positives = 280/566 (49%), Gaps = 23/566 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP ++ R+ ++R +        L  ++R L      L   + A   +  AI ++++I+I 
Sbjct: 19  IPALLKRIYISRGIHNLEQ---LETTVRSLHSY-QKLHGIELAVELLFNAIRDNKRIIIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GAQ+I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVDQAIELGAQVIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S D ++YA  +G+ V+V DHH    E     A+VNPN  +       L   GV F 
Sbjct: 135 NGVSSIDGVRYAKEKGLQVLVTDHHLPGHELPIVDAMVNPNLQECAFPSKALAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LMMALCVHMRKTGWFTQQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254

Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++      
Sbjct: 255 GKARPGIQALIEVAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LNQ R+ +E  M ++A A              +V+    WH G++G+LA+R+K
Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAICERLQFGENMPHGLVMFQRDWHQGVIGILASRIK 374

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           EKF RP  A +   +G   GS RSI G  +  ++        G++VK GGHAMAAGLT+ 
Sbjct: 375 EKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDVLDRIDTQNPGLIVKFGGHAMAAGLTIM 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             NF R  + F +     +       V   DG L     ++   +ML + GP+G   P P
Sbjct: 435 ESNFERFSNLFDEAVKQDLDEAALKGVILSDGELTPEEFSMHTAEMLRAGGPWGQAFPEP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
           +F     K+   ++V   HL++  E        +  +  IAF V      +    +  K 
Sbjct: 495 MFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASAKT 549

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + +   L +N +RG++  QL +    
Sbjct: 550 VRLAYKLDINEFRGNQSLQLMIDHLE 575


>gi|88801557|ref|ZP_01117085.1| putative single-stranded-DNA-specific exonuclease [Polaribacter
           irgensii 23-P]
 gi|88782215|gb|EAR13392.1| putative single-stranded-DNA-specific exonuclease [Polaribacter
           irgensii 23-P]
          Length = 561

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 174/579 (30%), Positives = 282/579 (48%), Gaps = 24/579 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW          +A  +     +   +A VL  RN+ + + AK +  PS+  +  DP ++
Sbjct: 2   RWTLKPT-PNKEKAAKLAADLKVDIAIAHVLCQRNIETYEAAKKYFRPSLEEIH-DPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D + A  RI  AI N+E I+I+GDYDVDG +SVAL+  +L   + N   YIPDR  +GY
Sbjct: 60  KDMELAVARIETAIANNENILIYGDYDVDGTSSVALVSSYLKTITPNIATYIPDRYAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++   +    LII +DCG  + D + YAT + ID I+ DHH+   E   A A++
Sbjct: 120 GISYMGIDFAQDNDFSLIIALDCGIKALDKVAYATAKNIDFIICDHHKPGVEIPKAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP R D       LC  GV F ++  +     Q        D +  LDLVA+A   D+V 
Sbjct: 180 NPKRNDCNYPFDELCGCGVGFKLIQALGTSRGQR-----IIDFVPYLDLVAIAIAADIVQ 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           + G NR +   GL V  +    G+KA+I + +    +T  ++ ++I P INA GR+   N
Sbjct: 235 MTGENRVFTYFGLQVINQNPRNGIKAIIAQTS-KKVLTITDVVFIIAPRINAAGRMKHGN 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL   +       A  +++ N +R+ ++  +  QA  +++ Q ++ Q A+V  V  
Sbjct: 294 YAVELLTEIEFDAAVKFAAAIEIFNADRKELDKKITNQALIQIIDQKEENQYATV--VFQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WH G++G++A+RL EK+ RP+   +   D K   S RS++GFD+   +    E   + 
Sbjct: 352 EDWHKGVIGIVASRLIEKYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEACSEF--IE 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+   N+    + F++   + +   + TP   ID  ++ S +      +
Sbjct: 409 QFGGHKYAAGLTLLPENYQNFKNKFEEVVESTIDKKLLTPEISIDTTIDLSEITPKFFRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMT-FESQDSETLQAIAFRVYGT 551
           ++  GP+G  N  P F     +     + V     HL++T F+  + +T  AI F     
Sbjct: 469 IQQMGPFGPLNMKPTFTSTCVRDNGYGKQVGADKTHLKLTVFQGDNQKTYNAIGFN---- 524

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            LG  +   +     +   L  N W G K  QL + D  
Sbjct: 525 -LGAKMPLVKND-FDIAYSLDENEWNGVKSVQLLLKDLK 561


>gi|330959153|gb|EGH59413.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 571

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/564 (31%), Positives = 287/564 (50%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 17  DLPPLLTRLYAARGVASE---AELDKSLARLIPY-QQLKGIDAAVELLVTALREDQRMLI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLMGASHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH   SE   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGSELPAADAIVNPNQPGCSFPSKSLAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL+ +   LR+         +  +L  LLDLVAL +V DVVPL   NR  V +GLM  R
Sbjct: 193 YVLMALRARLREVGWFDNNQRVQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD     
Sbjct: 253 AGRARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPVLAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RL
Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           KE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++
Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSL 431

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              N+    D F       +     T     DG L     ++ L   L +AGP+G   P 
Sbjct: 432 PEENYPAFADAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + + +
Sbjct: 492 PLFHG-VFQLVERRVVGERHLKMVLKTECGSVKLDGIAFSVDR----DVWPNPNIRWVEL 546

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL V+  +P
Sbjct: 547 AYKLDLNEFRGNETVQLMVVHLAP 570


>gi|121587618|ref|ZP_01677382.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           2740-80]
 gi|121728374|ref|ZP_01681403.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V52]
 gi|147674577|ref|YP_001217917.1| ssDNA exonuclease RecJ [Vibrio cholerae O395]
 gi|227082538|ref|YP_002811089.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           M66-2]
 gi|229507523|ref|ZP_04397028.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae BX
           330286]
 gi|298500225|ref|ZP_07010030.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MAK
           757]
 gi|121548128|gb|EAX58201.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           2740-80]
 gi|121629365|gb|EAX61796.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V52]
 gi|146316460|gb|ABQ20999.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           O395]
 gi|227010426|gb|ACP06638.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           M66-2]
 gi|227014309|gb|ACP10519.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           O395]
 gi|229355028|gb|EEO19949.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae BX
           330286]
 gi|297540918|gb|EFH76972.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MAK
           757]
          Length = 584

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/569 (31%), Positives = 277/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R VS       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF   C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFEHFCRLFDQLVREELDEAALQGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +      
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDV----S 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582


>gi|161501843|ref|NP_759519.2| ssDNA exonuclease RecJ [Vibrio vulnificus CMCP6]
 gi|319999089|gb|AAO09046.2| single-stranded-DNA-specific exonuclease RecJ [Vibrio vulnificus
           CMCP6]
          Length = 579

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++PDI+ R+ +NR +        L  +++ L      L   + A   + +AI   ++I++
Sbjct: 18  SVPDILKRIYLNRGI---QDISQLETAVKGLHSY-QKLHGIELAVELLFEAIREQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++E+ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVEQAIALGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   G+ V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKEHGLKVLVTDHHLPGQVLPEVDAMVNPNLQTCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKCGWFAEQGMAEPKLMELVDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   ++ +    + +    WH G++G+LA+
Sbjct: 314 RMAHELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DG   GS RSI G  +   +        G+++K GGHAMAAGL
Sbjct: 374 RIKEKYHRPVIAFADGGDGYIKGSCRSIPGLHMRDALDLIDTQNPGLILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       +   DG L     ++   ++L SAGP+G   
Sbjct: 434 TIKECDFERFSQLFDQLVKRELDEAALKGIVLSDGELKPEEFSMHTAELLRSAGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLFKGHPTNIMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +R ++  QL +    
Sbjct: 549 VKTVRLAYKLDINEFRNNQSLQLMIEHIE 577


>gi|153002031|ref|YP_001367712.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS185]
 gi|151366649|gb|ABS09649.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS185]
          Length = 577

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R       +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 22  HLSPLLKQLYARRGALTHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+++ITV
Sbjct: 77  VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V++ DHH    E   A A+VNPN+ D       +   GV F
Sbjct: 137 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 197 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 256

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 257 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 317 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 377 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +      ++   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 437 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      +   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 497 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 552 IVYKLDVNEYRGNFSLQLMVEQIE 575


>gi|311278188|ref|YP_003940419.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter cloacae
           SCF1]
 gi|308747383|gb|ADO47135.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter cloacae
           SCF1]
          Length = 577

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 278/564 (49%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L   +KA   +  A+    +I++
Sbjct: 21  DLPPLLRRLYASRGVRTAAD---LERSVKGMLP-WQQLNGVEKAVEMLYGALREGVRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLSLRALGCRNVSYLVPNRFEDGYGLSPEVVEQAHARGAQMIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A   GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVERAHALGIPVLVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTCLRDKGWFDEQGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEVSNRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           MLA +LD LNQ R+ +E  M  +A A         +       +    WH G+VG+LA+R
Sbjct: 317 MLASELDALNQTRKEIEQGMQAEALALCEKLEHSHETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLFPGLMLKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L+ S + + +  +L  AGP+G   P
Sbjct: 437 LEEAKFAEFQRRFGELVTEWLDPSLLQGEIVSDGPLSPSDMTLEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF +      +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTACWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L +N +RG++  QL + +  
Sbjct: 552 LAYKLDINEFRGNRSVQLIIDNIW 575


>gi|304410561|ref|ZP_07392179.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS183]
 gi|307304654|ref|ZP_07584404.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           BA175]
 gi|304351045|gb|EFM15445.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS183]
 gi|306912056|gb|EFN42480.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           BA175]
          Length = 574

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R       +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 19  HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+++ITV
Sbjct: 74  VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V++ DHH    E   A A+VNPN+ D       +   GV F
Sbjct: 134 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 374 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +      ++   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 434 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      +   R+V   HL++  E+Q     L AIAF V      +  ++       
Sbjct: 494 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIRHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572


>gi|270295834|ref|ZP_06202034.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D20]
 gi|317479740|ref|ZP_07938862.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           4_1_36]
 gi|270273238|gb|EFA19100.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D20]
 gi|316904110|gb|EFV25942.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp.
           4_1_36]
          Length = 571

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/582 (28%), Positives = 270/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    A+ F  P +  L  DP +
Sbjct: 4   KWNYQPITPEQAEASQQLAQELGISPILGKLLVERGITTAADARKFFRPQLPDLY-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+++GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDIAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSIQGVDYAAESGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L+ LLDL A++   D+V
Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFA-----LNNGIEFHHLIPLLDLCAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLTDKDITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  K++   D +     IV+
Sbjct: 298 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NKIVADLDGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F++F    +    T  V  I+  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFIERFEEFVSQNILPEQTCAVIDINAEIDFRDITPKFF 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 SDLKKFNPFGPDNAKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRFIKTKRSFDICYSIEENTHK-RGEVQLQIEDIKP 570


>gi|160890827|ref|ZP_02071830.1| hypothetical protein BACUNI_03272 [Bacteroides uniformis ATCC 8492]
 gi|156859826|gb|EDO53257.1| hypothetical protein BACUNI_03272 [Bacteroides uniformis ATCC 8492]
          Length = 623

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/582 (28%), Positives = 270/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  I+ ++LV R ++    A+ F  P +  L  DP +
Sbjct: 56  KWNYQPITPEQAEASQQLAQELGISPILGKLLVERGITTAADARKFFRPQLPDLY-DPFL 114

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+++GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 115 MKDMDIAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 174

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + + + YA  +GID I+ DHH       PA A+
Sbjct: 175 YGVSIQGVDYAAESGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 234

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +          N       L+ LLDL A++   D+V
Sbjct: 235 LNAKREDNTYPYEHLSGCGVGFKFMQAFA-----LNNGIEFHHLIPLLDLCAVSIASDIV 289

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 290 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLTDKDITVSDIVFKIGPRINASGRIQN 349

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  K++   D +     IV+
Sbjct: 350 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NKIVADLDGLADRRSIVL 408

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 409 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 465

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F++F    +    T  V  I+  ++   +     
Sbjct: 466 LENFGGHTYAAGLSMKVENVPAFIERFEEFVSQNILPEQTCAVIDINAEIDFRDITPKFF 525

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 526 SDLKKFNPFGPDNAKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 585

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 586 ----SHVRFIKTKRSFDICYSIEENTHK-RGEVQLQIEDIKP 622


>gi|260775482|ref|ZP_05884379.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608663|gb|EEX34828.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 578

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/568 (30%), Positives = 280/568 (49%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R ++       L  + R L      L   D A   + +AI  +++I++
Sbjct: 18  DIAPLLKRIYISRGITSAQQ---LETTARALHSY-QKLHGIDAAVELLFEAIQGNKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVIALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D ++YA  QG+ V+V DHH    E     A+VNPN  +       L   GV F
Sbjct: 134 DNGVSSIDGVRYAKEQGLKVLVTDHHLPGHELPNVDAMVNPNLEECAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRKQGWFAEQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL++++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLMANNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ R+ +E  M ++A A     Q  D      +V+    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGDKDMPHGLVLFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEKF RP  A +   +G   GS RSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 374 IKEKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDTLDRIDTQNPGLILKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F R    F +     +       V   DG L     ++ + +ML + GP+G   P
Sbjct: 434 IMEKDFERFAQLFDEAVKQELDDAALKGVILSDGELKPEEFSMHIAEMLRAGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 494 EPLFDGE-FKVLHQKLVGDKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL +    
Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLMIDHIE 576


>gi|159901344|ref|YP_001547591.1| single-stranded-DNA-specific exonuclease RecJ [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894383|gb|ABX07463.1| single-stranded-DNA-specific exonuclease RecJ [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 573

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/584 (29%), Positives = 271/584 (46%), Gaps = 23/584 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W         ++  ++ +      ++A +L NR        + FLN   +    DP +
Sbjct: 8   RHWQL-PTSASPSQLRSLGE---YHPLLAAILWNRGWRDAAAVEQFLNIDWKQ-RHDPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D+A  RI QA+   ++++++GD+D DG   V L+M+      +    YIP R  +G
Sbjct: 63  LHDMDRAVERIKQAVAQQQRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREGEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + +EK   EG  L++TVDCG ++   +  A   G D IV+DHHQ  +   PAYA+
Sbjct: 123 YGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAYAV 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P R D       LC  GV F +   ++R        P N     +LD+VAL T+ D++
Sbjct: 183 VDPKRSDCAYPFKGLCGVGVAFKLYEALWRA----GIQPNNLRARDILDVVALGTIADMM 238

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V  GL        PGLKAL+    +    I A ++G+ + P INA GR+ +
Sbjct: 239 PLTGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVD 298

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + +   LL++ D  + +  A +L+  N  R+ +   + + A      Q        ++V+
Sbjct: 299 ARIAYSLLLAPDQAQADGFADQLNSTNIERQALTRDVQQAARELA--QNSGQLDQRILVI 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ +H G+VGL A +L E+F RP   +  +E+ +  GS RSI GF+I   ++      +
Sbjct: 357 VGEDFHHGVVGLAAGKLAEEFARPVLVMG-KEEDRSRGSARSIPGFNIVNALAEC--ADL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             K GGHA AAG T+   +   L    Q  A+  +   +  P   ID       +N+  +
Sbjct: 414 FEKYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTL 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
            +LE   P+G  NP P F      +   R V     HL++  +        AI F +   
Sbjct: 474 AVLEKMAPFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQ-TAIGFNLGDW 532

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                     G ++ +   + +N W G    QL ++D    EG 
Sbjct: 533 ----LAELPNGSQIDIVYTVGINEWNGRSSVQLTLVDLRLSEGQ 572


>gi|126173090|ref|YP_001049239.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS155]
 gi|125996295|gb|ABN60370.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS155]
          Length = 577

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R       +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 22  HLSPLLKQLYARRGALTHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+++ITV
Sbjct: 77  VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V++ DHH    E   A A+VNPN+ D       +   GV F
Sbjct: 137 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 197 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 256

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 257 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 317 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 377 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +      ++   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 437 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      +   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 497 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 552 IVYKLDVNEYRGNFTLQLMVEQIE 575


>gi|218782997|ref|YP_002434315.1| single-stranded-DNA-specific exonuclease RecJ [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764381|gb|ACL06847.1| single-stranded-DNA-specific exonuclease RecJ [Desulfatibacillum
           alkenivorans AK-01]
          Length = 572

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/583 (29%), Positives = 271/583 (46%), Gaps = 21/583 (3%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
             RW     +  +    A+++       +A  +VNR +     A+ +L PS+  L P P 
Sbjct: 2   NRRWKL--CEPNLEAVEALSKYLGCHKAIAGAMVNRGIREPGAAERYLGPSLADL-PSPF 58

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            L D DKA  RI+ AI   E I++FGDYD DG  S AL+  FL         ++P R  +
Sbjct: 59  TLKDMDKAIARIIHAIQARENILVFGDYDADGVCSTALLTEFLLEAGARVFFHVPHRTQE 118

Query: 134 GYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           GYG +   +    +++  QL+ITVD G +S++A++ A   G+DVIV DHH       PA 
Sbjct: 119 GYGFSSQHIRNPVLSKKIQLVITVDNGISSHEAIEEAGQAGVDVIVTDHHTPSETPPPAL 178

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATV 250
           A+++P      SG  HL   GV F + + +   +R+    P     +L    DLVAL T+
Sbjct: 179 AVIDPKLPGCPSGLDHLAGVGVAFYLCIGLRMAMREQGLWPEGKEPNLKHKCDLVALGTI 238

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309
            D+VPLIG NR     GL +      PG+KAL++   + +  ++A +L +   P +NA G
Sbjct: 239 ADMVPLIGENRILTRAGLEIMGAAARPGVKALLDVSAVDNSTVSAHDLAFRAAPRLNAPG 298

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+  +N    LL+   +     LA ++D LN+ R+ M   +   A + + +   D++   
Sbjct: 299 RVDHANKAVELLLEKSNSRARQLAWEIDALNRKRQRMSEDLYHSALSLLKSD-HDLKGKR 357

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            +V+    WHPG++G+ AA+L  +F  P   IS ++   G GS RSI G D+ + +    
Sbjct: 358 SLVMAHSGWHPGVIGIAAAKLVREFNCPVVLISMDKR-TGKGSARSIPGVDLYQALQACE 416

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
            +  L+  GGHA AAGLT++  +       F               V  ID  +N   + 
Sbjct: 417 SQ--LIAFGGHAQAAGLTIDDKSIETFRGMFDSQVLEKSTERDFERVLTIDYSVNPMEIG 474

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET--LQAIAFR 547
               + +ES  P+G  NP PVF      ++    V   H +M F S +  T  LQAI F 
Sbjct: 475 PDFANQIESMAPFGIANPEPVFISTEVGIKQGPTVGRGHRRMVFHSGEGNTKPLQAIWFN 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +             V   +  N W+  +  Q  +    
Sbjct: 535 ARDQLVPSIAGA-------VAYRVQWNRWKDRQTVQAIIEGIR 570


>gi|300936042|ref|ZP_07150990.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           21-1]
 gi|300458834|gb|EFK22327.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           21-1]
          Length = 577

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ L+P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGLLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|164687523|ref|ZP_02211551.1| hypothetical protein CLOBAR_01164 [Clostridium bartlettii DSM
           16795]
 gi|164603297|gb|EDQ96762.1| hypothetical protein CLOBAR_01164 [Clostridium bartlettii DSM
           16795]
          Length = 835

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/579 (30%), Positives = 294/579 (50%), Gaps = 23/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W       G  +   +  +  I   ++++L NR++ +   A+ F+NPS+  L  DP +
Sbjct: 5   KKWTLK--HFGKIKENKVGTQVGISPEISQILKNRDIITEKDAEIFMNPSLDYLR-DPFL 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  K   RI +AI   E+I I+GDYDVDG +S ++++ +      +   YIP+R+ +G
Sbjct: 62  MKDMQKGVDRIKKAIEKKERIFIYGDYDVDGVSSTSILVLYFKSIGYDVKYYIPNRLKEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +EK    G  L+I+VDCG TS   +++A   G+DVI+ DHH+ + E   A A+
Sbjct: 122 YGISIEALEKINEIGCDLLISVDCGITSAKEVEFAKTLGMDVIITDHHECQDEIPDAIAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       LC  GV F ++  +               +   L++V LAT+CD+V
Sbjct: 182 INPKQEDCTYPYDFLCGCGVAFKLIQAL------TPPEVFRESMYDYLEIVTLATICDIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL   NR  V  GL + +   N GLK LI+   I    + + ++GY +GP INA GR+G 
Sbjct: 236 PLKDENRIIVKNGLKMMKDGRNIGLKELIKVCGIDTHQLKSSHIGYSVGPRINASGRLGY 295

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S LG  L  +D  ++ + +AM L+  N  R+L+ES M  +AEA + +     +   V+VV
Sbjct: 296 SYLGVELFTADSPEQAKEIAMDLEEKNSERQLIESKMYSEAEAIIASN-QSYEDDKVLVV 354

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  GI+G++A++L EK+ +P+  ++  E+G   GS RSI+GF I   +     + +
Sbjct: 355 ANEGWQHGIIGIVASKLTEKYYKPTILLT-IEEGMATGSARSIKGFSIFDALVEC--KDL 411

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAGL+++  N   L     + A   +         K++  L    V++ L+
Sbjct: 412 MSKFGGHEQAAGLSMDARNIDELRQRVNEIADYSLTKEDMIENIKVEYELQEGQVDLDLV 471

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           D L    P+G  NP P F   +  L +I  V     HL++T +       +AI F +   
Sbjct: 472 DQLHLLEPFGMSNPTPRFIMRDLVLANIGFVGAAKQHLKLTLQKDS--VYEAIGFNMAYL 529

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   +RG ++ V   L  N +  +++ Q  + D  
Sbjct: 530 ----ADEFTRGDKVDVLFQLDENNYNNNRKVQFLLKDVR 564


>gi|161829966|ref|YP_001596438.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii
           RSA 331]
 gi|161761833|gb|ABX77475.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii
           RSA 331]
          Length = 574

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 283/562 (50%), Gaps = 19/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+ + RNV+       L   ++ L+P   +L + DKA  R+ QA+ + ++I++ 
Sbjct: 20  LHPVLQRIYLARNVNSPDE---LTHELKNLLPYSSLL-NIDKAVARLTQALKDQQQIIVI 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L    + N +  +P+R   GYG  P +++   +    LIITVD
Sbjct: 76  GDFDADGATSTALTVSALHAFGMENVSYLVPNRFAYGYGLTPEIVDLASSRRPDLIITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A   GIDVI+ DHH       PAYA+VNPN  DD      L   GV F 
Sbjct: 136 NGISSHAGVAHANQLGIDVIITDHHLQGETVPPAYAIVNPNCKDDPFPSKCLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   L++ N          ++   LD VAL T+ D+VPL   NR  V +GL   R 
Sbjct: 196 LMLALRAELKKINWFERRGLECPNMAKFLDFVALGTIADIVPLDRNNRILVHQGLRRIRA 255

Query: 274 -QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            Q +PG+ AL+E        + A +LG+ IGP +NA GR+ + +LG   L++D+      
Sbjct: 256 GQAHPGILALLEVSGRPREKLRATDLGFGIGPRLNAAGRLDDMSLGVACLLADNLDAALD 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LN+ RR++ES M ++A   +     +      + +  + WH G+VGL+A+R+K
Sbjct: 316 IAYRLDDLNKERRVIESQMQKEAFDAIDGLNLNNGLPPALCLYQEEWHQGVVGLVASRVK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449
           E+  RP+   +   D    GS RS+ G  I  ++        G++ K GGHAMAAGL++ 
Sbjct: 376 ERTHRPTIVFAKMNDSTLKGSARSVSGLHIRNVLEAIAIKHPGLVTKFGGHAMAAGLSLP 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F    + F +  +  +      P    DG L ++ + + L  ++   GP+G   P P
Sbjct: 436 LERFNEFKEAFSREVNERLDEDDLQPRLVSDGELTSNELTLELALLMHEGGPWGQDFPEP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     KL + RVV   HL++  +  DS   L  IAF         F  +      H+ 
Sbjct: 496 LFDGR-FKLINQRVVGQRHLKLILQVPDSNYYLDGIAFHADLEQWPNFHCEYA----HLA 550

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L VN ++G ++ QL V    
Sbjct: 551 YRLDVNEFQGRRKLQLLVEHIR 572


>gi|29653848|ref|NP_819540.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii RSA
           493]
 gi|153207937|ref|ZP_01946490.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii
           'MSU Goat Q177']
 gi|154706986|ref|YP_001424908.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii Dugway
           5J108-111]
 gi|165919114|ref|ZP_02219200.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii
           RSA 334]
 gi|212218884|ref|YP_002305671.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii
           CbuK_Q154]
 gi|29541111|gb|AAO90054.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii RSA
           493]
 gi|120576238|gb|EAX32862.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii
           'MSU Goat Q177']
 gi|154356272|gb|ABS77734.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii Dugway
           5J108-111]
 gi|165917183|gb|EDR35787.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii
           RSA 334]
 gi|212013146|gb|ACJ20526.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii
           CbuK_Q154]
          Length = 574

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 283/562 (50%), Gaps = 19/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+ + RNV+       L   ++ L+P   +L + DKA  R+ QA+ + ++I++ 
Sbjct: 20  LHPVLQRIYLARNVNSPDE---LTHELKNLLPYSSLL-NIDKAVARLTQALKDQQQIIVI 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L    + N +  +P+R   GYG  P +++   +    LIITVD
Sbjct: 76  GDFDADGATSTALTVSALHAFGMENVSYLVPNRFAYGYGLTPEIVDLASSRRPDLIITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A   GIDVI+ DHH       PAYA+VNPN  DD      L   GV F 
Sbjct: 136 NGISSHAGVAHANQLGIDVIITDHHLQGETVPPAYAIVNPNCKDDPFPSKCLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   L++ N          ++   LD VAL T+ D+VPL   NR  V +GL   R 
Sbjct: 196 LMLALRAELKKINWFERRGLECPNMAKFLDFVALGTIADIVPLDRNNRILVHQGLRRIRA 255

Query: 274 -QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            Q +PG+ AL+E        + A +LG+ IGP +NA GR+ + +LG   L++D+      
Sbjct: 256 GQAHPGILALLEVSGRPREKLRATDLGFGIGPRLNAAGRLDDMSLGVACLLADNLDAALD 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LN+ RR++ES M ++A   +     +      + +  + WH G+VGL+A+R+K
Sbjct: 316 IAYRLDDLNKERRVIESQMQKEAFDAIDGLNLNNGLPPALCLYQEEWHQGVVGLVASRVK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449
           E+  RP+   +   D    GS RS+ G  I  ++        G++ K GGHAMAAGL++ 
Sbjct: 376 ERTHRPTIVFAKMNDSTLKGSARSVSGLHIRNVLEAIAIKHPGLVTKFGGHAMAAGLSLP 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F    + F +  +  +      P    DG L ++ + + L  ++   GP+G   P P
Sbjct: 436 LERFDEFKEAFSREVNERLDEDDLQPRLVSDGELTSNELTLELALLMHEGGPWGQDFPEP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     KL + RVV   HL++  +  DS   L  IAF         F  +      H+ 
Sbjct: 496 LFDGR-FKLINQRVVGQRHLKLILQVPDSNYYLDGIAFHADLEQWPNFHCEYA----HLA 550

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L VN ++G ++ QL V    
Sbjct: 551 YRLDVNEFQGRRKLQLLVEHIR 572


>gi|296117410|ref|ZP_06835998.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976012|gb|EFG82802.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 616

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 219/601 (36%), Positives = 323/601 (53%), Gaps = 16/601 (2%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEG------INRALAITQKHAIPDIVARVLVNRNVSID 55
           +D   LGV  S++G RW+                 +AI Q+  +P+IV R+L  R ++ +
Sbjct: 17  DDALVLGVSSSLTGRRWLWRDPSATRDAGRTARMGMAIMQQAGVPEIVGRMLAMRGIAPE 76

Query: 56  YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115
             +DFL P++R LMPDP  + D DKAA+R+ QAI  SE + +FGDYDVDGA S AL+  F
Sbjct: 77  VVQDFLTPTLRALMPDPAGMIDMDKAAQRLAQAITASETVGVFGDYDVDGACSAALLTHF 136

Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175
           L         ++PDR+ +GYGPN   +E  I++GA +I+ VDCG+ + D L   + +  D
Sbjct: 137 LRQMGCRVITHVPDRMNEGYGPNTPAIEAMIDDGAGVIVCVDCGTAASDILSPLSAR-AD 195

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--P 233
           +IV+DHH+V+ +     A VNPNRLD  S     CAA V F+ +V    +LR++      
Sbjct: 196 IIVLDHHKVQGDLPRITATVNPNRLDCPSRLHGACAAAVAFMAVVATAGVLRREGWFETR 255

Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPI 292
               L+  LDLVALA+VCDV+PL GLNRA+V +G+ +  R+   GL AL++        +
Sbjct: 256 PMPQLMDYLDLVALASVCDVMPLTGLNRAFVTQGMKIMARRQRTGLNALLDVSGVTDDRL 315

Query: 293 TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352
           ++   G+ +GP INAGGRI ES LG  LL+ +D+ E   LA +LD +N+ R+ +E  +L+
Sbjct: 316 SSSTCGFALGPRINAGGRIAESGLGLELLLCEDALEARRLAERLDAVNRRRQTVEGDILD 375

Query: 353 QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGS 412
            A      Q    +   V+++ G  WHPG+VG++A R+KEKF RP    +  EDG   GS
Sbjct: 376 IAMDMAARQR--EEGHPVLLLCGRDWHPGVVGIVAGRVKEKFNRPVLVGAMLEDGTVKGS 433

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
            RS+ G D+G  +  A + G L  GGGHAMAAG  +   +   L  F  +       AL 
Sbjct: 434 ARSVPGIDLGTAIIAARQAGHLTSGGGHAMAAGFGLNAGDIPALHMFLDERLS-HAAALP 492

Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQ 530
                 I+GV+  +A  + L   +    P+GAGN  P+ A P  ++     +      L+
Sbjct: 493 DAVDLCIEGVVGVAAATVELATDIGRLAPFGAGNDEPLLALPRVRILRADRIGREGNTLR 552

Query: 531 MTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +  E       L+A+ FR    P+   L       +H+ G L    W G       + DA
Sbjct: 553 LLIEGEGGGPRLKALLFRAGDNPMTPVLEDRNAPPVHLAGWLQAQTWNGRTTASFFIRDA 612

Query: 590 S 590
           +
Sbjct: 613 A 613


>gi|238754562|ref|ZP_04615916.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia ruckeri
           ATCC 29473]
 gi|238707193|gb|EEP99556.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia ruckeri
           ATCC 29473]
          Length = 577

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/563 (31%), Positives = 272/563 (48%), Gaps = 20/563 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+   R +        L   ++ L P   +L   +     + QA+   ++IMI 
Sbjct: 22  LHPLLRRLYATRGLKSPDE---LERGVKGLQPY-GLLDGIEAGVNLLQQALVERQRIMIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++E+    GA LI+TVD
Sbjct: 78  GDFDADGATSTALAVLSLRSMGCGNVDYLVPNRFDDGYGLSPEVVEQVAARGADLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN +        L   GV F 
Sbjct: 138 NGISSHTGVDLAHVKGIKVLVTDHHLPGEVLPAAEAIINPNLVGCDFPSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMLALRARLRESGWFEQRALAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+SDD  +   
Sbjct: 258 GKCRPGIKALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA+ LD LN  RR +E +M  +A       +    +    I +    WH G+VG+LA+R+
Sbjct: 318 LAIDLDTLNLTRREIEQSMQVEALQLCEQLERTSSELPYGIAMYHAEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGILKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F      F       +       V   DG L    + +   ++L   GP+G   P 
Sbjct: 438 EQDKFDEFRQRFAALVGEWMDPSQLEGVIWSDGELTGVQLTLETAELLRDGGPWGQAFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   R+V   HL++  E       L  IAF +  T   +    S  + + +
Sbjct: 498 PTFDGK-FRLLQQRLVGERHLKLMLEPLSGGPLLDGIAFNIDTTLWPD----SSVREVKL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L +N +RG++  QL +    
Sbjct: 553 AYKLDINEFRGNRSVQLLIQHIW 575


>gi|258625138|ref|ZP_05720055.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           VM603]
 gi|258582589|gb|EEW07421.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           VM603]
          Length = 579

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/568 (31%), Positives = 276/568 (48%), Gaps = 25/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ R+ +NR V        L  + + L      L   ++A   +  AI   ++I++ 
Sbjct: 19  IAPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGIERAVELLFAAIAEQKRIIVV 74

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F 
Sbjct: 135 NGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 254

Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++      
Sbjct: 255 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 314

Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+R
Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGLT
Sbjct: 375 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E  NF R C  F       +       +   DG L     ++   +ML + GP+G   P
Sbjct: 435 IEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTAEMLRAGGPWGQAFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 495 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----ASV 549

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RGS+  QL +    
Sbjct: 550 KTVRLAYKLDINEFRGSQSLQLMIDHIE 577


>gi|229524401|ref|ZP_04413806.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae bv.
           albensis VL426]
 gi|229337982|gb|EEO02999.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae bv.
           albensis VL426]
          Length = 584

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            I  ++ R+ ++R V+       L  + + L      L   D+A   +  AI   ++I++
Sbjct: 23  HIDPLLRRLYLSRGVTN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 79  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F
Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 199 YLMMALCVHMRQQGWFVAQGLAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258

Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   DD +    +V+    WH G++G+LA+
Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGL
Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+E  NF R C  F +     +       +   DG L     ++   ++L + GP+G   
Sbjct: 439 TIEEQNFARFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLYTAELLRAGGPWGQAF 498

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +RG++  QL +    
Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582


>gi|217974603|ref|YP_002359354.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS223]
 gi|217499738|gb|ACK47931.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS223]
          Length = 574

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R       +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 19  HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+++ITV
Sbjct: 74  VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V++ DHH    E   A A+VNPN+ D       +   GV F
Sbjct: 134 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ DD     
Sbjct: 254 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 374 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +      ++   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 434 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      +   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 494 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572


>gi|170718677|ref|YP_001783871.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus somnus
           2336]
 gi|168826806|gb|ACA32177.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus somnus
           2336]
          Length = 573

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 18/563 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++  P +L     A   +V A    +KI+I G
Sbjct: 19  HPLLDRIYRARQIKNPQQ---LDRTLKSMLA-PDLLHGIGSAVDLLVTAREKQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+DVDGA S AL++  L      + +  +P+R   GYG +  + +  + +  +L+ITVD 
Sbjct: 75  DFDVDGATSTALIVLALRQLGFTDVDYLVPNRFEQGYGLSVEVAKLALEKNVELLITVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +  N G+ V++ DHH       PA+A+VNPN          L   GV F V
Sbjct: 135 GVSSFDGVVFLKNAGVQVLITDHHLPPEILPPAHAIVNPNLTQCNFPSKFLAGVGVAFYV 194

Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +   LR           +   LLDLVAL T+ DVVPL   NR    +GL  +   + 
Sbjct: 195 MLALRAKLRDLGIFTTQTQPNFTELLDLVALGTISDVVPLDQNNRILAYQGLARIRAERC 254

Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL E  N +   +TA +LG+ IGP +NA GR+   ++G  LL++DD Q    LA 
Sbjct: 255 RPGIRALAEIANRNMSRLTASDLGFSIGPRLNAAGRLDNMSVGVELLLTDDMQHARQLAF 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M ++A           +Q  + IV+    WH G++G+LA+R+K+K
Sbjct: 315 ELDSLNQARKEIEQGMKQEALEICRNLTALSKQLPLGIVLYQVDWHQGVLGILASRIKDK 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP+ A + ++ G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 FHRPTIAFAQDQVGILKGSARSIEGLHMRDVLERIHSRYPDMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F +    F +     +       +   DG L  + +N+   ++L  AGP+G G P P F
Sbjct: 435 LFTQFQQAFIQTVTEWLKEEQLQGIIWTDGQLAPAFLNLETAELLRQAGPWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                 +    +V   HL+M  E  Q    L AIAF +      +F +    K   +   
Sbjct: 495 DGE-FTILRQSIVGEKHLKMLVEPKQGGPLLDAIAFNIDKDYYPDFSI----KHARIAYK 549

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
           L  N +RG++  QL V    P++
Sbjct: 550 LDSNEFRGNRHVQLLVDYIEPLD 572


>gi|183599839|ref|ZP_02961332.1| hypothetical protein PROSTU_03356 [Providencia stuartii ATCC 25827]
 gi|188022111|gb|EDU60151.1| hypothetical protein PROSTU_03356 [Providencia stuartii ATCC 25827]
          Length = 577

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 193/582 (33%), Positives = 280/582 (48%), Gaps = 24/582 (4%)

Query: 25  EGINRALAITQKH----AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
           E   R   + +        P+I+ RV  +R V+       L      L+ D   L+  D 
Sbjct: 4   ETFLRQRTLAEDIKTLDGFPEILQRVYAHRGVTD---ISQLERKAANLL-DYRTLSGIDN 59

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNP 139
           A   +  A+ N   I I GD+D DGA S AL +R L     VN N  +P+R  +GYG  P
Sbjct: 60  ALTLLYSALENHSVITIVGDFDADGATSTALAIRALKSMGYVNLNYIVPNRFENGYGLTP 119

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            ++E+    GA LIITVD G +S++ ++ A    I VIV DHH        A A++NPN 
Sbjct: 120 LVVEEAYKRGADLIITVDNGISSHEGVEAARQHDIKVIVTDHHLPGDVLPKADAIINPNL 179

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVP 255
                    L   GV F ++  +   LRQ+           +L   LDLVAL TV DVVP
Sbjct: 180 EGCQFASKSLAGVGVTFYLMSALRAKLRQEGWFVKQGMSEPNLAEFLDLVALGTVADVVP 239

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R  +   G+KALIE      S + A + G+ +GP +NA GR+ +
Sbjct: 240 LDTNNRILVHQGLHRVRAGRCCAGIKALIEVSKRECSRLVANDFGFALGPRLNAAGRLDD 299

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIV 372
            ++   LL++DD      LA +LD LNQ RR +E+ M ++A       +  D Q  + + 
Sbjct: 300 MSVSIELLLTDDMAYARELANELDGLNQARREIEAGMQQEASVLFNKIEYSDSQLPNGLA 359

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--E 430
           +    WH G+VG+LA+R+KE++ RP  A +   DG   GSGRS+ G  +   +      +
Sbjct: 360 IYHPEWHQGVVGILASRIKEQYHRPVIAFAPAGDGTLKGSGRSVPGVHMRDALERLNTLQ 419

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G++ K GGHAMAAGL++E   FG     F+     ++     + V   DG L      +
Sbjct: 420 PGLMQKFGGHAMAAGLSLEESKFGLFKQHFESLMGELIQPDQLSGVVWSDGELKQDEFTL 479

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY 549
            + ++L  +GP+G   P PVF     +L   R+V   HL+M  E  +    L AI F + 
Sbjct: 480 EIAELLRESGPWGQSFPEPVFDGY-FRLLQQRLVGERHLKMMLEPVKGGPMLDAIMFNID 538

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                +    +  KR  +   L VN +RG K  QL V    P
Sbjct: 539 VRRWPD----NSVKRAKIAFKLDVNEFRGQKSVQLMVEHIWP 576


>gi|30022484|ref|NP_834115.1| single-stranded-DNA-specific exonuclease recJ [Bacillus cereus ATCC
           14579]
 gi|29898042|gb|AAP11316.1| Single-stranded-DNA-specific exonuclease recJ [Bacillus cereus ATCC
           14579]
          Length = 779

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +   R   +  K  +  +V  + + R +  +    DFLN        DP +L
Sbjct: 7   RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+   R+ +AI N E+I+IFGDYD DG +S  ++   L         YIP+R  +GY
Sbjct: 64  EGMDRTGERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        + G  LIITVD G  +      A   GID+I+ DHH+   E   A A++
Sbjct: 124 GPNEEAFRWAHSAGVSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P     +    +L   GV F V   +   + +            LL++  + TV D+V 
Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL   R   N GLKAL +  N+S   IT E++G+ I P INA GR+ ++
Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL+SDD +E + LA ++D LN+ R+ +   + E+A A+V       +   V+V+ 
Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + W+PG++G++A++L E+F RP+  +S +       GS RSI GFD+    + +    +
Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH MAAG+T+   +   L     + A  I+      P+  +D       V +A I
Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + ++   P+G GNP P  A  + +L+SIR +    +HL+M        TL  I F     
Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S   ++ V G   +N W   K+ QL V D +      F  +
Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573


>gi|212213009|ref|YP_002303945.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii
           CbuG_Q212]
 gi|212011419|gb|ACJ18800.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii
           CbuG_Q212]
          Length = 574

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/562 (31%), Positives = 282/562 (50%), Gaps = 19/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+ + RNV+       L   ++ L+P   +L + DKA  R+ QA+ + ++I++ 
Sbjct: 20  LHPVLQRIYLARNVNSPDE---LTHELKNLLPYSSLL-NIDKAVARLTQALKDQQQIIVI 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L    + N +  +P+R   GYG  P +++   +    LIITVD
Sbjct: 76  GDFDADGATSTALTVSALHAFGMENVSYLVPNRFAYGYGLTPEIVDLASSRRPDLIITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A   GIDVI+ DHH       PAYA+VNPN  DD      L   GV F 
Sbjct: 136 NGISSHAGVAHANQLGIDVIITDHHLQGETVPPAYAIVNPNCKDDPFPSKCLAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   L++ N          ++   LD VAL T+ D+VPL   NR  V +GL   R 
Sbjct: 196 LMLALRAELKKINWFERRGLECPNMAKFLDFVALGTIADIVPLDRNNRILVHQGLRRIRA 255

Query: 274 -QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            Q +PG+ AL+E        + A +LG+ I P +NA GR+ + +LG   L++D+      
Sbjct: 256 GQAHPGILALLEVSGRPREKLRATDLGFGIAPRLNAAGRLDDMSLGVACLLADNLDAALD 315

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LN+ RR++ES M ++A   +     +      + +  + WH G+VGL+A+R+K
Sbjct: 316 IAYRLDDLNKERRVIESQMQKEAFDAIDGLNLNNGLPPALCLYQEEWHQGVVGLVASRVK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449
           E+  RP+   +   D    GS RS+ G  I  ++        G++ K GGHAMAAGL++ 
Sbjct: 376 ERTHRPTIVFAKMNDSTLKGSARSVSGLHIRNVLEAIAIKHPGLVTKFGGHAMAAGLSLP 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F    + F +  +  +      P    DG L ++ + + L  ++   GP+G   P P
Sbjct: 436 LERFDEFKEAFSREVNERLDEDDLQPRLVSDGELTSNELTLELALLMHEGGPWGQDFPEP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     KL + RVV   HL++  +  DS   L  IAF         F  +      H+ 
Sbjct: 496 LFDGR-FKLINQRVVGQRHLKLILQVPDSNYYLDGIAFHADLEQWPNFHCEYA----HLA 550

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L VN ++G ++ QL V    
Sbjct: 551 YRLDVNEFQGRRKLQLLVEHIR 572


>gi|315268947|gb|ADT95800.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS678]
          Length = 574

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R       +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 19  HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+++ITV
Sbjct: 74  VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V++ DHH    E   A A+VNPN+ D       +   GV F
Sbjct: 134 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253

Query: 273 -RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 VGRCRVGITALLEVAKRNPTRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 374 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +      ++   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 434 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      +   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 494 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572


>gi|296104554|ref|YP_003614700.1| ssDNA exonuclease RecJ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059013|gb|ADF63751.1| ssDNA exonuclease RecJ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 577

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/566 (31%), Positives = 277/566 (48%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L   +KA   +  A+    +I++
Sbjct: 21  DLPPLLKRLYASRGVRSA---GDLERSVKGMLP-WQQLNGIEKATEMLYNALREGTRIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N    +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALSVLSLRALGCENVTYLVPNRFEDGYGLSPEVVDQAHARGAQMILTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A   GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHAHQLGIPVLVTDHHLPGDTLPAAEAIINPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +  +LR             +L   LDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTLLRDKGWFESRGIAVPNLAEYLDLVALGTVADVVPLDTNNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEIANRDPLKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSGETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGLMLKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +   + +   +       DG L    + + +  ML  AGP+G   P
Sbjct: 437 LEEAKFDEFQRLFGELVTDWIDPALLQGEVISDGELAPMEMTMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V      +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRIVGERHLKVMVEPVGGGPLLDGIAFNVDTAVWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + +  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|160876747|ref|YP_001556063.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS195]
 gi|160862269|gb|ABX50803.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica
           OS195]
          Length = 577

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R       +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 22  HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+++ITV
Sbjct: 77  VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V++ DHH    E   A A+VNPN+ D       +   GV F
Sbjct: 137 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 197 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 256

Query: 273 -RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 257 VGRCRVGITALLEVAKRNPTRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 317 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 377 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +      ++   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 437 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      +   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 497 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 552 IVYKLDVNEYRGNFSLQLMVEQIE 575


>gi|312171248|emb|CBX79507.1| Single-stranded DNA-specific exonuclease [Erwinia amylovora ATCC
           BAA-2158]
          Length = 572

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 194/560 (34%), Positives = 279/560 (49%), Gaps = 17/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  +R VS       L    R L P    L+  D+A   + +A+ ++  IMI
Sbjct: 21  DLHPLLRRLYAHRGVSRA---CELERGARNLHP-FQSLSGIDQAVTILQKALLDNLCIMI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALTVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAVRGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A  +GI VIV DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275
            +++ +   LR D    L  +L  LLDLVAL TV DVVPL   NR  V +GL   R  + 
Sbjct: 197 YLMLALRARLRDDGVNTL-PNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +  MLA 
Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLAQARMLAS 315

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A           +   + I +    WH G+VG+LA+RLKE+
Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESASEALPLGIAMYHPEWHQGVVGILASRLKER 375

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A +   DG   GSGRSI G  +  ++        G++VK GGHAMAAGL+++  
Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTLHPGLIVKFGGHAMAAGLSLQEA 435

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F     + + A     V   DG L A  + +   ++L  AGP+G   P P F
Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLRDAGPWGQAFPEPTF 495

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                KL   R+V   HL++  E       L  IAF V      +       K++ +   
Sbjct: 496 DGK-FKLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTALWPD----PAVKQVELAYK 550

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L VN +RG++  QL +    
Sbjct: 551 LDVNEYRGNRNVQLIIDHLW 570


>gi|148260299|ref|YP_001234426.1| single-stranded-DNA-specific exonuclease RecJ [Acidiphilium cryptum
           JF-5]
 gi|146401980|gb|ABQ30507.1| exonuclease RecJ [Acidiphilium cryptum JF-5]
          Length = 594

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 229/592 (38%), Positives = 328/592 (55%), Gaps = 11/592 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
              GVE S++G RW+          A AI Q+  +P+++ R+L  R V  D+A DFL P+
Sbjct: 10  PAFGVERSLTGRRWLWRP--AADRTAQAIAQRCGVPEVIGRLLAGRGVMPDHAADFLEPT 67

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R  +PDP  LTD D AA RI  ++     I IFGDYDVDGA S ALM   L        
Sbjct: 68  LRAYLPDPSALTDMDAAAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTI 127

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            Y+PDR+ +GYGPN   +     +GA+LI+ VDCG+ +++AL     +  D IV+DHH+ 
Sbjct: 128 NYVPDRLREGYGPNAPALRALAGQGAELIVCVDCGTAAHEALAALDGR-ADAIVLDHHKS 186

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242
           +       A VNPNR DD SG G++CAA + FL LV + R LR+          DLLS+L
Sbjct: 187 EGAPPAIVATVNPNRADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRREIDLLSML 246

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALATVCDV+PL GLNRA V +GL V  R+  PG+ AL++   +         G+ IG
Sbjct: 247 DLVALATVCDVMPLTGLNRALVTQGLKVMARRERPGIAALLDVAQVREAPGTMTCGFAIG 306

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GRI E++LG R L++ +     +LA +LD +N+ R+ +E+ +L++A      Q 
Sbjct: 307 PRINAAGRIAEADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEAQF 366

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
                A V +V G++WHPG+VG++A R+KE F RP+   +   +G+ +GSGRS+ G D+G
Sbjct: 367 AA--GAPVALVAGEQWHPGVVGIVAGRIKETFNRPALV-AGIAEGRAVGSGRSVPGVDLG 423

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             +  A E G+L+KGGGHAMAAG TVE      L  F  +    +   L       I+G+
Sbjct: 424 SAIIAAREAGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLA-VAATLPDAADLPIEGM 482

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSET 540
                ++ AL   +   GP+GAGN  PVF  P  ++     +      ++   E +    
Sbjct: 483 AAVGGIDEALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGGR 542

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           L+ I FR     L   L +  G  +++ GH+    W G     L ++DA+P 
Sbjct: 543 LKTILFRAGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAPA 594


>gi|294634842|ref|ZP_06713364.1| single-stranded-DNA-specific exonuclease RecJ [Edwardsiella tarda
           ATCC 23685]
 gi|291091715|gb|EFE24276.1| single-stranded-DNA-specific exonuclease RecJ [Edwardsiella tarda
           ATCC 23685]
          Length = 565

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 274/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  NR V        L   ++ L+P    L+  + A   + + +     ++I 
Sbjct: 10  LPPLLRRLYANRGVRSA---TELERGVKGLLPY-ASLSGIEAAVALLQEVLEQRLHLVIV 65

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     +     +P+R  DGYG +P ++ +    GA++I+TVD
Sbjct: 66  GDFDADGATSTALSVLALRAMGCDHVQYLVPNRFEDGYGLSPEVVAQAAEMGAEMIMTVD 125

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A+VNPN  D       L   GV F 
Sbjct: 126 NGVSSHAGVEAAHARGIRVLVTDHHLPGETLPAAEAIVNPNLADCAFPSKSLAGVGVAFY 185

Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR- 272
           +++ + R L              +L  LLDLVAL TV DVV L   NR  V +GL   R 
Sbjct: 186 LMLALRRHLIDQGWFERLGRPAPNLAELLDLVALGTVADVVALDSNNRILVHQGLSRIRV 245

Query: 273 RQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E      + +TA +LG+ +GP +NA GR+ + +LG  LL+S+D  +   
Sbjct: 246 GRCRPGIRALLEVAKRDAARLTAGDLGFALGPRLNAAGRLDDMSLGVALLLSEDMPQARA 305

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA  LD LNQ RR +E  M  +A A   + +    +    + +    WH G+VG++A+R+
Sbjct: 306 LACDLDNLNQTRREIEQGMQSEALAICASLERTLTELPYGLALYHPEWHQGVVGIVASRI 365

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGLT+
Sbjct: 366 KERFYRPVIAFAPAGDGLLKGSGRSLPGLHMRDALERLDTLHPGLMLKFGGHAMAAGLTI 425

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F       +       V   DG L    + + + + L  AGP+G   P 
Sbjct: 426 EADRFEDFRRHFATLVGEWLDPAQLEGVVWSDGALGGDELTLPVAEQLREAGPWGQAFPE 485

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF V  T   +    +  + + +
Sbjct: 486 PTFDGC-FRILQQRLVGERHLKLMLEPLAGGPLLDGIAFNVDTTLWPD----ASVREVEL 540

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG++  QL +    P
Sbjct: 541 AYRLDVNEYRGNRSVQLMIEHLWP 564


>gi|113461615|ref|YP_719684.1| single-strand DNA-specific exonuclease [Haemophilus somnus 129PT]
 gi|112823658|gb|ABI25747.1| exonuclease RecJ [Haemophilus somnus 129PT]
          Length = 573

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 18/563 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++  P +L     A   +V A    +KI+I G
Sbjct: 19  HPLLDRIYRARQIKNPQQ---LDRTLKSMLA-PDLLHGIGSAVDLLVTAREKQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+DVDGA S AL++  L      + +  +P+R   GYG +  + +  + +  +L+ITVD 
Sbjct: 75  DFDVDGATSTALIVLALRQLGFTDVDYLVPNRFEQGYGLSVEVAKLALEKNVELLITVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +  N G+ V++ DHH       PA+A+VNPN          L   GV F V
Sbjct: 135 GVSSFDGVVFLKNAGVQVLITDHHLPPEILPPAHAIVNPNLTQCNFPSKFLAGVGVAFYV 194

Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +   LR           +   LLDLVAL T+ DVVPL   NR    +GL  +   + 
Sbjct: 195 MLALRAKLRDLGIFTTQTQPNFTELLDLVALGTISDVVPLDQNNRILAYQGLARIRAERC 254

Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL E  N +   +TA +LG+ IGP +NA GR+   ++G  LL++DD Q    LA 
Sbjct: 255 RPGIRALAEIANRNMSRLTASDLGFSIGPRLNAAGRLDNMSVGVELLLADDMQHARQLAF 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M ++A           +Q  + IV+    WH G++G+LA+R+K+K
Sbjct: 315 ELDSLNQARKEIEQGMKQEALEICRNLTALSKQLPLGIVLYQVDWHQGVLGILASRIKDK 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP+ A + ++ G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 FHRPTIAFAQDQVGILKGSARSIEGLHMRDVLERIHSRYPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F +    F +     +       +   DG L  + +N+   ++L  AGP+G G P P F
Sbjct: 435 LFTQFQQAFIQTVTEWLKEEQLQGIIWTDGQLAPAFLNLETAELLRQAGPWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                 +    +V   HL+M  E  Q    L AIAF +      +F +    K   +   
Sbjct: 495 DGE-FTILRQSIVGEKHLKMLVEPKQGGPLLDAIAFNIDKDYYPDFSI----KHARIAYK 549

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
           L  N +RG++  QL V    P++
Sbjct: 550 LDSNEFRGNRHVQLLVDYIEPLD 572


>gi|299142696|ref|ZP_07035826.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris
           C735]
 gi|298575911|gb|EFI47787.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris
           C735]
          Length = 584

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/585 (27%), Positives = 277/585 (47%), Gaps = 22/585 (3%)

Query: 16  FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W          +A   +  K AI  I+A++L+ R +  +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYEPPTPEERQAADELGGKLAINPILAQLLIRRGIKTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   +      G +LII +DCG  +   ++ A + GID I+ DHH    +  PA A
Sbjct: 122 GYGVSEKGIGYAKQTGVKLIIILDCGIKAIKEIELAKSLGIDFIICDHHVPDEQMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKREDDSFPFKHLCGCGVGFKFMQGWAK-----NNGIPFSRLIPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+   NR     GL    +  + GLKA+I+   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVTEENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  +D  N+ R+ ++  M E+A   ++++ +  +  S IV
Sbjct: 297 NGKESVDLLVEKDYNIALRKAKHIDEYNEQRKDIDKQMTEEANV-IVSKLESQKYHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDLATGSARSVTGFDVYAAIKHC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT+   +       FQ++  + +    T     +D  L+   +   L
Sbjct: 413 LLMNFGGHTYAAGLTLRWDDIPLFRKRFQQYVEDHIAPEQTEATIHLDAQLDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G     P+F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 YNDLKRFAPFGPECTKPLFFTQGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +           +   +   +  N ++ ++  QL++ D  P E
Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEANVFKHNQ-VQLQIEDIRPGE 572


>gi|253988694|ref|YP_003040050.1| ssDNA exonuclease RecJ [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|211637982|emb|CAR66610.1| ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780144|emb|CAQ83305.1| ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj)
           [Photorhabdus asymbiotica]
          Length = 577

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 283/564 (50%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ R+   R +      + L  S++ L+ +   L+   +A   ++ A++   +I+I 
Sbjct: 22  IHPLLRRLYAIRGI---QQANELERSVQGLL-NYQHLSGVQQAVSLLLAALHEHWRIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +R L      N +  +P+R  DGYG +P ++E+ + +GA LIITVD
Sbjct: 78  GDFDADGATSTALAIRSLRAMGYRNLDYLVPNRFEDGYGLSPQVVEEVVKKGADLIITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+D +  A    + VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHDGVAAAHQHQMKVIVTDHHLPGEILPAADAIINPNLSDCSFPSKSLAGVGVTFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   LR++           +L  +LDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMSALRAALRKEQWFEKQGVALPNLAEMLDLVALGTVADVVPLDTNNRILVYQGLNRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G++AL+E     +  +TA +LG+ +GP +NA GR+ + ++G  LL++DD  +   
Sbjct: 258 GRCCAGIRALLEVSKRDAHKLTASDLGFFLGPRLNAAGRLDDMSIGVALLLTDDIAKARQ 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E  M ++A       +    +    + +    WH G+VG+LA+R+
Sbjct: 318 IACELDGLNHTRREIEQGMQQEALQICDKLERTSTELPYGLALYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS++G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSVQGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E+  F +    F     + +       V   DG L    + + + +ML   GP+G   P 
Sbjct: 438 EQDKFEQFQHHFSVLMADWLDISQLEGVIWSDGELAIGELTLEMAEMLRDGGPWGQAFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           PVF     KL   R+V   HL++  E       L  I F +  T   +    +  + + +
Sbjct: 498 PVFDGK-FKLHQQRIVGERHLKVIVEPLNGGPMLDGIVFNIDPTRWPD----NSVRAVEL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG++  QL +    P
Sbjct: 553 AYKLDVNEFRGNRDVQLLIQHLWP 576


>gi|37678851|ref|NP_933460.1| ssDNA exonuclease RecJ [Vibrio vulnificus YJ016]
 gi|320157370|ref|YP_004189749.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio vulnificus
           MO6-24/O]
 gi|37197592|dbj|BAC93431.1| single-stranded DNA-specific exonuclease [Vibrio vulnificus YJ016]
 gi|319932682|gb|ADV87546.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio vulnificus
           MO6-24/O]
          Length = 579

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++PDI+ R+ +NR +        L  +++ L      L   + A   + +AI   ++I++
Sbjct: 18  SVPDILKRIYLNRGI---QDISQLETAVKGLHSY-QKLHGIELAVALLFEAIREQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     N  +  +P+R  DGYG +P ++E+ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVEQAIALGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   G+ V+V DHH          A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVRYAKEHGLKVLVTDHHLPGQVLPEVDAMVNPNLQTCAFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRQCGWFAEQGMAEPKLMELVDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++     
Sbjct: 254 AGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M     A  + L   ++ +    + +    WH G++G+LA+
Sbjct: 314 RMAHELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DG   GS RSI G  +   +        G+++K GGHAMAAGL
Sbjct: 374 RIKEKYHRPVIAFADGGDGYIKGSCRSIPGLHMRDALDLIDTQNPGLILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  +F R    F +     +       +   DG L     ++   ++L SAGP+G   
Sbjct: 434 TIKECDFERFSQLFDQLVKRELDEAALKGIVLSDGELKPEEFSMHTAELLRSAGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+   ++V   HL++  E        +  +  IAF V      +    + 
Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLFKGYPTNIMIDGIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            K + +   L +N +R ++  QL +    
Sbjct: 549 VKTVRLAYKLDINEFRNNQSLQLMIEHIE 577


>gi|224025992|ref|ZP_03644358.1| hypothetical protein BACCOPRO_02743 [Bacteroides coprophilus DSM
           18228]
 gi|224019228|gb|EEF77226.1| hypothetical protein BACCOPRO_02743 [Bacteroides coprophilus DSM
           18228]
          Length = 573

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/585 (29%), Positives = 277/585 (47%), Gaps = 22/585 (3%)

Query: 15  GFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
            ++W      QE    A A++++  I  I+  +L  R +     AK F  P +  L  +P
Sbjct: 2   NYKWNYQPPTQEQREAARALSKELGINPILCHLLRERGIDSAAEAKRFFRPQLSELH-NP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D + A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FLMKDMNIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G +LII +DCG  +   + YA  +GID I+ DHH        A 
Sbjct: 121 EGYGVSKKGVDYAYETGVKLIIVLDCGIKAVKEIAYAKEKGIDFIICDHHVPDEVLPQAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP R D      HL   GV F  +          N       L  LLDLVA++   D
Sbjct: 181 AILNPKRHDSTYPYHHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI
Sbjct: 236 IVPIMGENRILAYHGLRQLNSNPSIGLKAIIDVCGLAERDITMSDIVFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LLI  D Q+    + +++  N+ R+ ++ +M E+A  K++ Q  D+ Q   I
Sbjct: 296 QNGKEAVDLLIEKDFQQALEKSNRINRYNETRKDLDKSMTEEA-NKIVDQLSDLSQRRTI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WH G++G++A+RL E + RP+  ++  + G   GS RS+ GFD+ K +      
Sbjct: 355 VIYNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-GLATGSARSVSGFDVYKAIENC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+ +  + +    T+    ID  L+   +   
Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFTRRFEDYVTSHILPEQTSATINIDAQLDFRDITPK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
               L+   P+G  N  PVFA  N     + +VV     H+++     + +  +  IAF 
Sbjct: 472 FFFDLKKFNPFGPDNHKPVFATLNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +       +  ++   +  N  +     QL++ D  P 
Sbjct: 532 QS----SQARYIKTKQSFNICYTIEENTHK-RGEIQLQIEDIKPS 571


>gi|254447063|ref|ZP_05060530.1| single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium HTCC5015]
 gi|198263202|gb|EDY87480.1| single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium HTCC5015]
          Length = 582

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/569 (31%), Positives = 284/569 (49%), Gaps = 24/569 (4%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           +  ++P +V R+L  R VS      +   +++ L   P +L   ++A +R+ + +   + 
Sbjct: 23  EDPSLPPLVDRILRTRGVSTVEQCQY---TLKRLHA-PDLL-GMERACQRLYEVLEQQQS 77

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           ++I GDYD DGA S A+++R L    +   +  +P+R   GYG +P ++E        ++
Sbjct: 78  VIIVGDYDADGATSTAVLIRALKALGLKRIDYLVPNRFDYGYGLSPEIVEVAAQGKPDVL 137

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           ITVD G +S + +  A   GIDVIV DHH   S    A A+VNPN  +D     HL   G
Sbjct: 138 ITVDNGISSIEGVARANQLGIDVIVTDHHLPGSVLPQALAIVNPNLENDPFPSKHLAGVG 197

Query: 214 VVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
           VVF +L+ +   LR +           +L   LDLVAL TV DVV L   NR  V +GL 
Sbjct: 198 VVFYLLIALRAYLRDNGWFEARGVAPLNLAESLDLVALGTVADVVRLDENNRILVDQGLK 257

Query: 270 VARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R  Q  PG+ AL++      + + A +LG+ +GP +NA GR+ + +LG   L++DD+ 
Sbjct: 258 RIRSGQCCPGINALLQVAKRKANQLQAADLGFAVGPRLNAAGRLDDMSLGIECLLTDDAS 317

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ---ASVIVVEGDRWHPGIVG 384
             E +A  LD +N  RR +E  M +QA   +      ++     + + V  + WHPG+VG
Sbjct: 318 RAEEIAAALDGINHERRQIEQTMKDQAFKALERLEASLEGQALPAALSVFEENWHPGVVG 377

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAM 442
           ++AAR+KE+F RP  A + E D    GS RSI G  I   +        G++ K GGHAM
Sbjct: 378 IVAARVKERFHRPVIAFARESDDVVKGSARSIAGLHIRDALERVNSQHPGLIQKFGGHAM 437

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AAGL++   N       F       +   +       DG L+   + +++ + L+  GP+
Sbjct: 438 AAGLSLPEKNLASFRQAFAAVVAEQLGESVGQRELHTDGGLSGDEMTLSMAECLQQYGPW 497

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
           G G P P F     ++   R+V   HL+M     D  ++ AIAF   G  L      +  
Sbjct: 498 GQGFPEPRFDGE-FEIVDQRIVGQHHLKMVLRHPDGPSIDAIAFNETGEHL------TGA 550

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +R+     L +N +RG +  QL++    P
Sbjct: 551 QRIRAVYALDINEFRGQRSVQLKIDYLEP 579


>gi|258620861|ref|ZP_05715895.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           VM573]
 gi|258586249|gb|EEW10964.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           VM573]
          Length = 579

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/568 (31%), Positives = 276/568 (48%), Gaps = 25/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ R+ +NR V        L  + + L      L   ++A   +  AI   ++I++ 
Sbjct: 19  IAPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGIERAVELLFAAIAEQKRIIVV 74

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TVD
Sbjct: 75  GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + ++YA  +G+ V+V DHH    E     A+VNPN          L   GV F 
Sbjct: 135 NGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   +RQ             L+ L+DLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LIMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 254

Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+ ++      
Sbjct: 255 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 314

Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +A +LD LNQ R+ +E        A  + L   DD +    +V+    WH G++G+LA+R
Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEK+ RP  A +   DGK  GS RS+ G  +   +        GI++K GGHAMAAGLT
Sbjct: 375 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E  NF R C  F       +       +   DG L     ++   +ML + GP+G   P
Sbjct: 435 IEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTAEMLRAGGPWGQAFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  +  IAF V      +    +  
Sbjct: 495 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----ASV 549

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RGS+  QL +    
Sbjct: 550 KTVRLAYKLDINEFRGSQSLQLMIDHIE 577


>gi|120555186|ref|YP_959537.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter
           aquaeolei VT8]
 gi|120325035|gb|ABM19350.1| exonuclease RecJ [Marinobacter aquaeolei VT8]
          Length = 577

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/566 (31%), Positives = 286/566 (50%), Gaps = 21/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P I+ R+   R V  D    +   +++ L   P+ L   D+A   + +AI   +++M+
Sbjct: 21  NLPPILRRLYAARGVQSDDQLQY---TLKHL-ASPMQLRGIDRAVELLAEAIVQKQRVMV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEG--AQLII 154
            GD+D DGA S ++ M  LS       +  +P R  DGYG  P ++ +   +G    L++
Sbjct: 77  LGDFDADGATSTSVAMLGLSMLGVAAIDFRVPSRFSDGYGLTPGIIHRLQEDGDLPDLLV 136

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G ++ + ++ A   GI V++ DHH    E   A A+VNPN+        +    GV
Sbjct: 137 TVDNGISAIEGVRAARELGIKVVITDHHLAGEELPDADAIVNPNQPGCPFLSKNAAGVGV 196

Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +F VL  + + LR +N++P    +L SLLDLVA+ TV DVVPL   NR +V +G+   R+
Sbjct: 197 MFYVLTALRKHLRDNNRLPDPEPNLGSLLDLVAVGTVADVVPLDHNNRIFVEQGIRRIRK 256

Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG+ AL+E        I+A +LG+++GP +NA GR+ + ++G   L++D   E   
Sbjct: 257 GEARPGILALLEVAGRDYTEISATDLGFVVGPRLNAAGRLDDMSIGIACLLADSRDEALR 316

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390
           LA +LD  N+ RR +E  M  QA+  + +   DI        +    WH G++G+LAAR+
Sbjct: 317 LARELDNFNRERRTIEKDMKAQAQDLLASMSLDIDGLPWGLALFDQDWHQGVIGILAARI 376

Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLT 447
           +E+  RP+ A + ++DG+   GS RSI G  I   ++   A   G++ K GGHAMAAG+T
Sbjct: 377 REQTHRPTIAFAPDDDGEHLKGSARSIPGLHIRDALAVVDAKNPGLMKKYGGHAMAAGMT 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           + R +     + F +   + +           DG L    +N+    +L+ AGP+G   P
Sbjct: 437 IARDDLACFSNAFDQAVRDTLKPEDLEAAITTDGPLAPEELNLDTAYLLKRAGPWGQHFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            PVF     ++ S R+V   HL++  +  +    +  IAF   G  + +F          
Sbjct: 497 EPVFDGE-FRVVSQRIVGENHLKLVLQPVEGGGIIDGIAFN-TGPEVPDFTRSGA----R 550

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           V      N +RG    QL V    P+
Sbjct: 551 VVYKPDANTFRGRTNLQLLVDYLEPL 576


>gi|307243796|ref|ZP_07525927.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492799|gb|EFM64821.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus
           stomatis DSM 17678]
          Length = 827

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/579 (31%), Positives = 298/579 (51%), Gaps = 23/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W  L  QE       + +  +I   + ++L+NR + S D  + F +PS++ L  DP +
Sbjct: 2   KKWNILHRQEPSRN--DLMESMSISKEIGQILLNRGIESQDQVEMFTDPSLKYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   EKI IFGDYDVDG +S ++M+ +        + YIP+R+ +G
Sbjct: 59  LKDMDKAVERIRQAISRKEKIWIFGDYDVDGVSSTSIMVLYFKSIGYPVDYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   ++  +LIITVDCG TS   ++YA   GIDVI+ DHH+ +     AYA+
Sbjct: 119 YGLNIEAIDHIGSQDGRLIITVDCGITSVKEVEYARGLGIDVIITDHHECQESLPAAYAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P R D       +C  GV F ++  +              ++   L++V+LAT+CD++
Sbjct: 179 VDPKREDCSYPFEGICGCGVAFKLIHAL------SGNEDFYKNINRYLEIVSLATICDIM 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           P++  NR  V  G+ +  +  N G+KAL+E   +  + I + +LG+ IGP INA GR+G 
Sbjct: 233 PILDENRIIVKNGMEILGQGNNIGMKALLEVCGLDGTKIKSSHLGFAIGPRINASGRLGF 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           SNLG  L  SD+ QE   LA+ +D  N  R+ +E+ +  + E  + ++    +   V+VV
Sbjct: 293 SNLGVDLFTSDNLQEARNLALMMDTKNTERQEVEARIHMEVEDII-SKDPSYRDDKVLVV 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH GI+G++A+++ EK+ +P   +  EE    +GS RSI+GFDI   +        
Sbjct: 352 SGEDWHHGIIGIVASKVTEKYYKPCILL-CEEGDIAVGSARSIKGFDIFSALYEC--RDY 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH  AAG+++E    G L +   + A+  +       V +++  ++ S++N+ L+
Sbjct: 409 MTKFGGHQQAAGMSMEVAKIGLLREKINQIANYELDQEDLVEVIRVEYEIDQSSLNLDLV 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + L    P+G  NP P F      L+ +  +     HL+M  E         I F +   
Sbjct: 469 ENLHLLEPFGIKNPTPYFMLRKCLLKRLMTIGRDKNHLKMVVEKD--MEFDVIGFNMAHL 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     G  + +   +  N +      QL + D  
Sbjct: 527 GTDY----QEGDLVDLVFQVDSNTFNNKTSLQLLLKDMR 561


>gi|281425177|ref|ZP_06256090.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris
           F0302]
 gi|281400643|gb|EFB31474.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris
           F0302]
          Length = 584

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/587 (27%), Positives = 277/587 (47%), Gaps = 22/587 (3%)

Query: 16  FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W          +A   +  K AI  I+A++L+ R +  +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYEPPTPEERQAADELGGKLAINPILAQLLIRRGIKTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   +      G +LII +DCG  +   ++ A + GID I+ DHH    +  PA A
Sbjct: 122 GYGVSEKGIGYAKQTGVKLIIILDCGIKAIKEIELAKSLGIDFIICDHHVPDEQMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRKDDSFPFKHLCGCGVGFKFMQGWAK-----NNGIPFSRLIPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+   NR     GL    +  + GLKA+I+   ++   ++  ++ + IGP INA GR+ 
Sbjct: 237 VPVTEENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  +D  N+ R+ ++  M E+A   ++ + +  +  S IV
Sbjct: 297 NGKESVDLLVEKDYNIALRKAKHIDEYNEQRKDIDKQMTEEANV-IVAKLESQKYHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDLATGSARSVTGFDVYAAIKHC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT+   +       FQ++  + +    T     +D  L+   +   L
Sbjct: 413 LLMNFGGHTYAAGLTLRWDDIPLFRKRFQQYVEDHIAPEQTEATIHLDAQLDFKDITKKL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G     P+F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 YNDLKRFAPFGPECTKPLFFTQGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             +           +   +   +  N ++ ++  QL++ D  P E H
Sbjct: 533 SAS----VRYIKSKRSFDIAYTIEANVFKHNQ-VQLQIEDIRPGEEH 574


>gi|326403489|ref|YP_004283571.1| single-stranded-DNA-specific exonuclease RecJ [Acidiphilium
           multivorum AIU301]
 gi|325050351|dbj|BAJ80689.1| single-stranded-DNA-specific exonuclease RecJ [Acidiphilium
           multivorum AIU301]
          Length = 594

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 229/592 (38%), Positives = 328/592 (55%), Gaps = 11/592 (1%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
              GVE S++G RW+          A AI Q+  +PD++ R+L  R V  D+A DFL P+
Sbjct: 10  PAFGVERSLTGRRWLWRP--AADRTAQAIAQRCGVPDVIGRLLAGRGVMPDHAADFLEPT 67

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           +R  +PDP  LTD D AA RI  ++     I IFGDYDVDGA S ALM   L        
Sbjct: 68  LRAYLPDPSALTDMDAAAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTI 127

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            Y+PDR+ +GYGPN   +     +GA+L++ VDCG+ +++AL     +  D IV+DHH+ 
Sbjct: 128 NYVPDRLREGYGPNAPALRALAGQGAELVVCVDCGTAAHEALAALDGR-ADAIVLDHHKS 186

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242
           +       A VNPNR DD SG G++CAA + FL LV + R LR+          DLLS+L
Sbjct: 187 EGAPPAIVATVNPNRADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRREIDLLSML 246

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVALATVCDV+PL GLNRA V +GL V  R+  PG+ AL++   +         G+ IG
Sbjct: 247 DLVALATVCDVMPLTGLNRALVTQGLKVMARRERPGIAALLDVAQVREAPGTMTCGFAIG 306

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GRI E++LG R L++ +     +LA +LD +N+ R+ +E+ +L++A      Q 
Sbjct: 307 PRINAAGRIAEADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEAQF 366

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
                A V +V G++WHPG+VG++A R+KE F RP+   +   +G+ +GSGRS+ G D+G
Sbjct: 367 AA--GAPVALVAGEQWHPGVVGIVAGRIKETFNRPALV-AGIAEGRAVGSGRSVPGVDLG 423

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             +  A E G+L+KGGGHAMAAG TVE      L  F  +    +   L       I+G+
Sbjct: 424 SAIIAAREAGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLA-VAATLPDAADLPIEGM 482

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSET 540
                ++ AL   +   GP+GAGN  PVF  P  ++     +      ++   E +    
Sbjct: 483 AAVGGIDEALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGGR 542

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           L+ I FR     L   L +  G  +++ GH+    W G     L ++DA+P 
Sbjct: 543 LKTILFRAGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAPA 594


>gi|254513972|ref|ZP_05126033.1| single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium NOR5-3]
 gi|219676215|gb|EED32580.1| single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium NOR5-3]
          Length = 576

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 185/584 (31%), Positives = 283/584 (48%), Gaps = 22/584 (3%)

Query: 21  LLGQEGINRALAITQKHA-IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCD 79
              +    R     Q    +  I+ARV   R V+       L+ S+  L P P +L   D
Sbjct: 3   RPSRNIRRREFDGAQSLGDLSPILARVYAARGVTDP---GELDLSLAALHP-PELLAGLD 58

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPN 138
            A  R+ QA+ ++E+I+I GD+D DGA S AL +  L        +  +P+R   GYG  
Sbjct: 59  AATERLQQALEHNERILIVGDFDADGATSTALAIAALRQFGATQLDYLVPNRFEFGYGLT 118

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++         LIITVD G +S D +  A   GI+V++ DHH    E   A  +V+PN
Sbjct: 119 PGIVALAGQRKPDLIITVDNGISSIDGVAAANAAGIEVLITDHHLPGQELPAARVIVDPN 178

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVV 254
           +         L   GV+F +L+ +   LR  +           L S LDLVAL TV DVV
Sbjct: 179 QAGCSFPSKALAGVGVMFYLLLALRTRLRDQDWFVKRGLEEPHLGSFLDLVALGTVADVV 238

Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           PL   NR  V  GL   R  +  PG+ AL+         + A +LG+  GP +NA GR+ 
Sbjct: 239 PLDHNNRILVEGGLARMRSGRARPGINALLSVAGRDPSAVVASDLGFAAGPRLNAAGRLD 298

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM-LEQAEAKVLTQCDDIQQASVI 371
           + +LG   L+ +DS +   +A++LD +N+ R+ +E  M  E   A       D    + +
Sbjct: 299 DMSLGIECLLCEDSAQARNIALQLDSMNRERQRIERGMEQEALAALAGLDLRDSDLPAAL 358

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429
           V+    WH G+VG+LA+R+K++F RP  A +  ++G+  GSGR I G  +  ++ +    
Sbjct: 359 VLHDPGWHQGVVGILASRIKDRFHRPVIAFARSDEGELKGSGRGIPGMHLRDLLDWVATQ 418

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             G++ + GGHAMAAGL++   ++ +  + F          L   PV + DG L     +
Sbjct: 419 HPGLIDRFGGHAMAAGLSLPAAHYDQFAEAFTAAV-EQSGGLNLEPVIESDGELAPQDFD 477

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRV 548
           +A  +ML  AGP+G   P P+F     +L+S R+V   HL+M+  +  D   L+AIAF V
Sbjct: 478 LATAEMLRRAGPWGQLFPEPLFDG-VFELRSQRIVGERHLKMSLSKPGDGALLEAIAFGV 536

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 +        ++ +   L VN +RG +  QL V      
Sbjct: 537 DTDRWPDL----SVTQVRLAYRLDVNQFRGERSLQLLVEQIEAA 576


>gi|312898882|ref|ZP_07758270.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera
           micronuciformis F0359]
 gi|310620044|gb|EFQ03616.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera
           micronuciformis F0359]
          Length = 660

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 179/578 (30%), Positives = 290/578 (50%), Gaps = 24/578 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           RW+    +        + ++  I  ++AR LVNR ++    AK FL  S+  L  DP ++
Sbjct: 4   RWIY--AEPSQKTVRQLQEQLHISSLLARTLVNRGITDSTDAKHFLYDSMSSLY-DPFLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  K A RI+ AI   E+I+++GDYDVDG  S AL+ R L     +   YIP+R  +GY
Sbjct: 61  KDVRKGAERILTAIERGERIVVYGDYDVDGITSTALVYRSLCDLGADPAFYIPERQSEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +E+ + +  ++IITVDCG +S   ++       D+I+ DHH+        YA++
Sbjct: 121 GLNRDALEELVRDKTEVIITVDCGISSAKLVKEFNT-QTDIIITDHHEPSEHIPEGYAVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP + D +     L   GV + +   +  +  + +             LVAL TV D+VP
Sbjct: 180 NPKQKDCMYPYKELAGVGVAYTLCRALRMLAGKTDG-------EKYTSLVALGTVADLVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L G NR  V  GL       N G++ALI+   +  + I+A N+ + + P +NA GRI  +
Sbjct: 233 LTGENRILVADGLSRIAEGDNCGIQALIKTAGLDATKISAGNIAFSVAPRLNAAGRISHA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
             G  LL+  DS + +  A +L  LN  R+ +E A+   A  +V  +    +   V+VV 
Sbjct: 293 EKGVFLLLEKDSDKAKETAEELHDLNTQRQEIEWAITTAAIDEVENEGY--EDDHVLVVA 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           GD WH G++G+ A+RL EK+ +PS  IS ++ G G GS RSI GF++ + ++   E  +L
Sbjct: 351 GDGWHSGVIGIAASRLIEKYYKPSLVISLKD-GVGKGSCRSITGFNMYEALNSCKE--LL 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGHAMAAG +V + N   L +   ++A   +      PV  +D V+    + +  + 
Sbjct: 408 IQFGGHAMAAGFSVAQENIDALREQLNEYALRHLTEKDYIPVLNVDSVVAGEDITVDTVH 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            L    PYG GN  P+F   N  L  I+ +     HL++  ES+D   L  + + +    
Sbjct: 468 ELSLLEPYGMGNTRPLFVLKNALLYDIKEIGRQKTHLRIVAESEDGCRLSGVGWSMADK- 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             ++++  R   + +     +N +      QL + D  
Sbjct: 527 -ADYIL--RNDEVDLAFQPELNTYHDRTTAQLVLRDMR 561


>gi|224369267|ref|YP_002603431.1| RecJ [Desulfobacterium autotrophicum HRM2]
 gi|223691984|gb|ACN15267.1| RecJ [Desulfobacterium autotrophicum HRM2]
          Length = 572

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/577 (30%), Positives = 281/577 (48%), Gaps = 20/577 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
                +        + +      IVA +L NR V + + A  FL P++  L   P  L D
Sbjct: 6   EWKEKKSNSATVAGLEKALGCHRIVATLLANRGVKTPEAALAFLTPTMETL-TSPFSLKD 64

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            D+A  RI+ AI N+E+I+IFGD+D DG  + A++  FL+H +   + YIP R  +GYG 
Sbjct: 65  MDRAVERIILAIENNERILIFGDFDADGITATAVLNDFLTHVNGEISWYIPHRSKEGYGL 124

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
               +     +   LI+TVDCGS S++A+  A  + IDVIV DHH+V      A A+VNP
Sbjct: 125 KVEHIAMATEQQIDLIVTVDCGSDSFEAVDLARLEDIDVIVTDHHEVPDPAPRALAIVNP 184

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
            +    SG  HL   GV F +++ +   +R+          +LL+  DLVAL T+ D+VP
Sbjct: 185 KQKCCHSGLDHLAGVGVAFYLVIALRMEMRKRGMWQRFTEPNLLASCDLVALGTIADMVP 244

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314
           L   NR   + G+ V RR   PGL AL +   I    I ++++ + I P INA GR+  +
Sbjct: 245 LTAENRVLTIAGIEVMRRGKRPGLSALFDVARIDVALIDSDDIAFRIAPRINAAGRMAHA 304

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            +   LL S D +  E  A  LD LN+ R+  E +++   E ++  Q     + ++++ +
Sbjct: 305 RICIDLLCSRDPRGAEQKADLLDQLNKKRQQTEQSIVADIERRISRQNGAPCKDALVMWD 364

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+++  K+  P   IS        GS RSI   +I   +        L
Sbjct: 365 SS-WHPGVLGIVASKISRKYVCPVVLISTANS-PATGSCRSINNINIHSALGQC--SDFL 420

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGHAMAAGLT++  N       F+    +IV       + ++D  L    V   LI+
Sbjct: 421 ERFGGHAMAAGLTIQEKNMAAFSHHFENTIRSIVHGEPRKRILELDCALEIDTVTKELIE 480

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ---DSETLQAIAFRVYGT 551
            ++S  P+G GNP P+F   + K+    ++ + H +M    Q       + A+ F +   
Sbjct: 481 AIDSLRPFGMGNPEPLFYCKDIKVTHSTIIGMRHRKMELAKQTNASGPCISAVHFNIDDL 540

Query: 552 P-LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
             L +   Q       +   + +N + G    Q+ + 
Sbjct: 541 DCLPDHFEQ-------IAFRIRMNRFNGRFSPQIIIE 570


>gi|331006946|ref|ZP_08330191.1| Single-stranded-DNA-specific exonuclease recJ [gamma
           proteobacterium IMCC1989]
 gi|330419266|gb|EGG93687.1| Single-stranded-DNA-specific exonuclease recJ [gamma
           proteobacterium IMCC1989]
          Length = 585

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/577 (31%), Positives = 288/577 (49%), Gaps = 32/577 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ RV  +R V  D   D+    ++ L+P P +L     A R +  A+   +K+MI 
Sbjct: 18  IHPLLQRVFSSRGVVDDDELDY---QLKNLLP-PSLLKGLPDAIRLLSNAVIQQQKVMIV 73

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L    +   +  +P+R   GYG  P ++E   N    LI+TVD
Sbjct: 74  GDFDADGATSCALSILALRAMGLQQVDFLVPNRFEYGYGLTPEIVEVANNYQPDLIVTVD 133

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S + ++ A + GI V+V DHH        A A+VNPN+        +L   GV+F 
Sbjct: 134 NGIASVEGVEKAKSLGIKVLVTDHHLPPDVLPNADAIVNPNQRGCDFPSKNLAGVGVIFY 193

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           VL  +   LR+ +           + + LDLVAL TV DVVPL   NR  V +GL   + 
Sbjct: 194 VLTALRTALREQDWFEEQGIKEPLMANYLDLVALGTVADVVPLDRNNRLLVQQGLQRIKA 253

Query: 274 QG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PGL ALI+        I++ + G++IGP +NA GR+ + ++G R L++DD      
Sbjct: 254 GHTRPGLLALIQVAGKDYQRISSSDFGFIIGPRLNAAGRLDDMSVGIRCLLTDDVDVAHE 313

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT----------QCDDIQQASVIVVEGDRWHPG 381
           LA +LD LN++RR +ES+M  +A   + +          + +     S I +  D WH G
Sbjct: 314 LAAELDGLNRDRRAIESSMQREAIQYLESVVVESVVVEGEANTDTIPSGICLYNDSWHQG 373

Query: 382 IVGLLAARLKEKFGRPSFAISF--EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKG 437
           +VG++A+R+KEK+ RP  A +    +     GS RSI    I  ++         IL K 
Sbjct: 374 VVGIVASRIKEKYYRPVIAFAPSDVDSDFIKGSARSIPNLHIRDVLDSIATAHPAILQKF 433

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHAMAAGL++ + ++    + F +   N++       +   DG L++  +N+A+   ++
Sbjct: 434 GGHAMAAGLSLHKDDYAEFSELFNQAVENVLDPEDLQELMLSDGELSSGEINLAIAHAIQ 493

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS--ETLQAIAFRVYGTPLGE 555
            AGP+G G P P+F      + S R+V   HL++   S  +   T+ AIAF V       
Sbjct: 494 QAGPWGQGFPEPLFDGEFF-IVSQRIVGEKHLKLVVSSDANAVHTVDAIAFNVDVEQWP- 551

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               +   ++ +   L +N++RG +  QL V   + +
Sbjct: 552 ---NNTVSKVRLAYQLSINFFRGQESVQLMVKHIAVL 585


>gi|300214762|gb|ADJ79178.1| Single-stranded-DNA-specific exonuclease [Lactobacillus salivarius
           CECT 5713]
          Length = 777

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 194/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W  +   E  +    + ++   P IV ++L+ R     +   +FL+P  R L  DP  
Sbjct: 6   KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +    RI QAI N EKI+I+GDYDVDG  S ALM   L         YIPDR  DG
Sbjct: 64  MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRFKDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN  + ++ I+EG  LI+TVD G   ++A+ YA   G+DV+V DHH++      AYA+
Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +     G L   GV F V   +   L QD           +LDLVAL TV D+V
Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V  GL + ++   PGL++L +   I    IT E +G+ + P +NA GR+  
Sbjct: 233 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEAPTITEETIGFTLAPRLNALGRMEN 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG  LL + D +  E LA   + LN  R+   + ++E+A A++  +    +   V VV
Sbjct: 293 GSLGVELLTTLDEERAEELAKTTNQLNVKRQEEVNEIVEEAVAQLANKS---ENHLVNVV 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432
            G+ WH G+VG++A+RL +  G+PS  +S +E  G   GSGRSIE F +    +      
Sbjct: 350 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKAGIAKGSGRSIEAFQM--FDALDSHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH MA GL+++R     L     +          T PV K+   +N   VN+ L
Sbjct: 408 ILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLDL 466

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              LE+  P+G  NP PVF F ++++ +++ +     HL++  +S +S+ + A+ F +  
Sbjct: 467 EAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + E         + + G L  N W+     Q+ + D 
Sbjct: 526 KKISEIERNKN--SVRLIGTLGKNVWQSRVNLQIMIEDI 562


>gi|227891087|ref|ZP_04008892.1| single-stranded-DNA-specific exonuclease [Lactobacillus salivarius
           ATCC 11741]
 gi|227866961|gb|EEJ74382.1| single-stranded-DNA-specific exonuclease [Lactobacillus salivarius
           ATCC 11741]
          Length = 788

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 194/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W  +   E  +    + ++   P IV ++L+ R     +   +FL+P  R L  DP  
Sbjct: 17  KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 74

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +    RI QAI N EKI+I+GDYDVDG  S ALM   L         YIPDR  DG
Sbjct: 75  MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRFKDG 134

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN  + ++ I+EG  LI+TVD G   ++A+ YA   G+DV+V DHH++      AYA+
Sbjct: 135 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 194

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +     G L   GV F V   +   L QD           +LDLVAL TV D+V
Sbjct: 195 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 243

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V  GL + ++   PGL++L +   I    IT E +G+ + P +NA GR+  
Sbjct: 244 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEAPTITEETIGFTLAPRLNALGRMEN 303

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG  LL + D +  E LA   + LN  R+   + ++E+A A++  +    +   V VV
Sbjct: 304 GSLGVELLTTLDEERAEELAKTTNQLNVKRQEEVNKIVEEAVAQLANKS---ENHLVNVV 360

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432
            G+ WH G+VG++A+RL +  G+PS  +S +E  G   GSGRSIE F +    +      
Sbjct: 361 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQM--FDALDSHRD 418

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH MA GL+++R     L     +          T PV K+   +N   VN+ L
Sbjct: 419 ILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLDL 477

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              LE+  P+G  NP PVF F ++++ +++ +     HL++  +S +S+ + A+ F +  
Sbjct: 478 EAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 536

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + E         + + G L  N W+     Q+ + D 
Sbjct: 537 KKISEIERNEN--SVRLIGTLGKNVWQSRVNLQIMIEDI 573


>gi|324115091|gb|EGC09056.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia
           fergusonii B253]
          Length = 577

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +IM+ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKYGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|301327293|ref|ZP_07220549.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           78-1]
 gi|300846156|gb|EFK73916.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           78-1]
          Length = 577

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ S + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPSEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|293570535|ref|ZP_06681590.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E980]
 gi|291609481|gb|EFF38748.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E980]
          Length = 765

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/590 (29%), Positives = 277/590 (46%), Gaps = 31/590 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R V 
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFVH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I EG QLIITVD G    DA+ YA   G+DVI+ DHH++  +   AYA
Sbjct: 123 GYGPNQSVYQEKIQEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   +      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVALGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + E+A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRSIE  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L   P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   +  +++ +     HL+     + S+ L A+AF    
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAANVKRIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               E L+ +    + V G L +N W G K+ QL V D +      F  +
Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAVGSLQVFDWR 567


>gi|260914422|ref|ZP_05920891.1| recombination protein J [Pasteurella dagmatis ATCC 43325]
 gi|260631523|gb|EEX49705.1| recombination protein J [Pasteurella dagmatis ATCC 43325]
          Length = 573

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/562 (30%), Positives = 274/562 (48%), Gaps = 18/562 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ RV   R++        L+ ++  L+  P  L   ++A   +V A    EKI++ G
Sbjct: 19  DPLLDRVYRARHIKNAKQ---LDRTLASLLH-PQDLYGIERAVNLLVSAYQQQEKIVVVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      +    IP+R   GYG + ++ E+ + +  QL++TVD 
Sbjct: 75  DFDADGATSTALTVLALRQLGFTDVEFLIPNRFEQGYGLSIAVAEQALEKNVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S D + +   +G+ V++ DHH        A A+VNPN +D       L   GV F +
Sbjct: 135 GVSSVDGVAFLKQRGVKVLITDHHLPPEILPEADAIVNPNLVDCQFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GL  +   + 
Sbjct: 195 MLAVRAKFRELGVFTQQTQPNFTELLDLVALGTIADVVPLDQNNRILAYQGLARIRAERC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++AL E  N   S  +A +LG+ IGP +NA GR+   ++G  LL++++ +    LA+
Sbjct: 255 RCGIRALAEVANRDISQFSASDLGFSIGPRLNAAGRLDNMSVGVELLLAENMETARALAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ+RR +E  M  +A            +    I +    WH G++G+LA+R+K++
Sbjct: 315 ELDSLNQSRREIEQGMKLEALEICRNLTALKQELPLGITLYQADWHQGVLGILASRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A + +++G   GS RS+EG  +   +         +++K GGH+MAAGL++   
Sbjct: 375 FHRPVVAFAQDQEGILKGSARSVEGLHLRDALERIHTKYPNMILKFGGHSMAAGLSIYES 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +     +       +   DG L     ++ + + L+ AGP+G   P PVF
Sbjct: 435 EFAAFQQAFNQIVSEWLGEDKLQGIVWTDGELAGHQFSLEIAEALKEAGPWGQAFPEPVF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                K+   R+V   HL+M  E  Q    L AIAF V      +  +    K   +   
Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVEPKQGGPLLDAIAFNVDTRYYPDMSI----KSAKLAYK 549

Query: 571 LCVNYWRGSKRCQLRVLDASPV 592
           L +N +RG++  QL V    P+
Sbjct: 550 LDINEFRGNRNIQLLVDYILPI 571


>gi|222153267|ref|YP_002562444.1| single-stranded-DNA-specific exonuclease [Streptococcus uberis
           0140J]
 gi|222114080|emb|CAR42494.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           uberis 0140J]
          Length = 743

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/590 (28%), Positives = 280/590 (47%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
           + W     +        + +K+ + ++ A++L  R +S   A D FL   +  L  DP +
Sbjct: 6   YDWKIEQEKPDDG-FFKLAKKNGLTELSAQILFERGISSQEAMDHFLRADLADLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI QAI N E+I+I+GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMEKAVNRIRQAIENYEQILIYGDYDADGMTSASIMKETLEMLGAEVLVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + F+N+    LI+TVD G + ++ + YA   G+DVIV DHH + ++   A+A
Sbjct: 124 YGPNLSVYKYFMNQEKVSLILTVDNGVSGHEGISYAQANGVDVIVTDHHSLPNQLPEAFA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   +       L   GV F +   +           L+     LLDLVA+ T+ D+
Sbjct: 184 IIHPEHPNADYPFKKLAGCGVAFKLATAL-----------LDGVPTELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ L+    +       E +G+ + P +NA GR+ 
Sbjct: 233 VSLTDENRILVKNGLHVLKSSERVGLQELMALSQVDFDHFDEEVVGFKLAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E + +A  ++  N+ R+ +   + E+A A V TQ        V V
Sbjct: 293 DPNPAIELLTGFDEEEAQGIARMINGKNEERKALVQTIFEEAIAMVDTQ------KPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+  +    ++  E+G   GS RSIE  +I    +    + 
Sbjct: 347 LAKEGWHPGVLGIVAGRIMEETSQTVLVLA-IENGFAKGSARSIEAINI--FKALNHSKD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGH  AAG+T+   N   L +    +              KID  L    +++  
Sbjct: 404 LLTAFGGHEGAAGMTLPVENIPLLSEALCHYVTENEIDWTVKNSLKIDHELQLEEISLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           I  L    P+G  +P P+F   + ++   R +     HL+     + S  +  +AF    
Sbjct: 464 IKNLNLLAPFGMDHPQPIFLMKDFQVIQARTLGADNKHLKFRIR-KGSSEVDVLAFNQG- 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             L +   QS+G  + +   L VN W GS   QL ++DA  +    +  +
Sbjct: 522 -HLLQEFQQSQG--LELAVTLSVNVWNGSTSLQLMLIDARVMGIQLYDIR 568


>gi|289565838|ref|ZP_06446280.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           D344SRF]
 gi|294614047|ref|ZP_06693976.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1636]
 gi|289162381|gb|EFD10239.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           D344SRF]
 gi|291593093|gb|EFF24673.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1636]
          Length = 765

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/581 (30%), Positives = 276/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I EG QLIITVD G    DA+ YA   G+DVI+ DHH++      AYA
Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   +      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + ++A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRSIE  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L+  P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   + ++I+ +     HL+       S+ L A+AF  +G
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T   E L      ++ V G L +N W G K+ QL V D S 
Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558


>gi|323978816|gb|EGB73897.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TW10509]
          Length = 577

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +IM+ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERDIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|218550139|ref|YP_002383930.1| ssDNA exonuclease RecJ [Escherichia fergusonii ATCC 35469]
 gi|218357680|emb|CAQ90321.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia fergusonii ATCC
           35469]
 gi|323966693|gb|EGB62125.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           M863]
 gi|325498453|gb|EGC96312.1| ssDNA exonuclease RecJ [Escherichia fergusonii ECD227]
 gi|327251655|gb|EGE63341.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           STEC_7v]
          Length = 577

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +IM+ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|330995216|ref|ZP_08319129.1| single-stranded-DNA-specific exonuclease RecJ [Paraprevotella
           xylaniphila YIT 11841]
 gi|329576358|gb|EGG57872.1| single-stranded-DNA-specific exonuclease RecJ [Paraprevotella
           xylaniphila YIT 11841]
          Length = 574

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/585 (28%), Positives = 275/585 (47%), Gaps = 22/585 (3%)

Query: 15  GFRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
            ++W       E    A  + ++  I  I+ R+L+ RN++    AK F  PS+  L  DP
Sbjct: 2   NYKWKLEPPTPEKQEAAERLAKELNISPILGRLLIERNITTVADAKKFFRPSLTGLY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            + TD D+A  R+ +A+   E+IM++GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FMFTDMDRAVERLNKALGRKERIMVYGDYDVDGCTAVALVYKFLQQYYSNIDYYIPDRYE 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++       +LII +DCG  + D + YA  +GID I+ DHH       PA 
Sbjct: 121 EGYGVSVKGIDYAYESEVKLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  R D      HL   GV F  +    +    +        L+ LLDL A++   D
Sbjct: 181 AILNAKRFDSTYPYPHLSGCGVGFKFMQAFAQSNGIE-----FSQLIPLLDLCAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLKA+I+        +T  ++ + IGP INA GRI
Sbjct: 236 IVPIMGENRILAYHGLRQLNANPSIGLKAIIDVCGLSERELTISDIIFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+  D Q    +A +++  N  R+ ++ +M E+A   ++ + D   +   I
Sbjct: 296 QNGKEAVALLVEKDYQTAHEMAEQINRYNDMRKGLDKSMTEEANG-IVEKLDKQSEQKSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WH G++G++A+RL E + RPS  ++  +     GS RS+ GFD+ K +      
Sbjct: 355 VIYNEEWHKGVIGIVASRLTEIYYRPSVVLTRTD-NLATGSARSVSGFDVYKAIESC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+ +    +    T+ +  ID  ++   +   
Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFHRRFEAYVETHILPEQTSAILNIDAQIDFKDITRK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
               L+   P+G  N  P+F   +     + +VV     H+++     + +  +  IAF 
Sbjct: 472 FHHDLKKFNPFGPDNTKPLFCTQHVYDYGTSKVVGREQEHIKLELVDNKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +       +   +   +  N  +     QL++ D  P 
Sbjct: 532 QS----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIRPS 571


>gi|239996018|ref|ZP_04716542.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas
           macleodii ATCC 27126]
          Length = 573

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 175/563 (31%), Positives = 288/563 (51%), Gaps = 19/563 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+   RN++     D L   ++ L     +L    +AA+ +  A+  +++I+I
Sbjct: 18  DLHPVIDRIYRGRNIAN---LDDLENGLKGLTH-FNVLKGMPQAAQILADAVVQNKRIII 73

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L      N +  +P+R   GYG +  ++++   +GA++I+TV
Sbjct: 74  VGDFDADGATSTSVCILALRAMGYHNVDFLVPNRFDFGYGLSVPIVDEAAKQGAEVIVTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +  D + +A + G+ V+V DHH       PA A+VNPN+        +L   GV F
Sbjct: 134 DNGISCIDGVTHAKSLGMQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKNLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   L+Q            +L SLLD+VA+ TV DVV L   NR  V +GL   R
Sbjct: 194 YIMLALKAELQQQGHFERAGVAPPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIR 253

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N   + +T+ +LG+++GP +NA GR+ + + G   L+ D++ +  
Sbjct: 254 AGKCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLLEDETIQAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAAR 389
           M+A +LD LN+ RR +E+ M  QAE  +     D     S +VV  + +H G++G++A R
Sbjct: 314 MIAAELDALNKERREIETGMKAQAETVLEQMALDEGDMPSALVVYREDFHQGVIGIVAGR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           LKEK+ +P  A + ++D    GS RSI G  I  ++        G++ K GGHAMAAGL+
Sbjct: 374 LKEKYLKPVIAFAHQDDEIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +           F   A   +  L        DG L++  + +    +L  AGP+G G  
Sbjct: 434 LPVAKLQDFEQAFVDIARAHMAKLDGNHALLSDGDLSSKELCLPFAHLLRQAGPFGQGFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           +P+F      L   R+V   HL+M  +S  +  + AIAF V           +  KR+H+
Sbjct: 494 SPLFDGE-FALLDQRLVGQKHLKMVLKSDGANEVDAIAFNVDLKSWP----NAMVKRVHI 548

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L +N +RG +  QL V    
Sbjct: 549 AYRLDINVFRGQETVQLIVEQIE 571


>gi|301169955|emb|CBW29559.1| ssDNA exonuclease, 5'--> 3'-specific [Haemophilus influenzae 10810]
          Length = 575

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 285/565 (50%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   ++A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCGFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMPKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +ES M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDELNQTRKEIESGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         I++K GGHAMAAGL++ + 
Sbjct: 375 YHRPVIAFTQDGEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIRKE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFDDFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574


>gi|145639265|ref|ZP_01794871.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittII]
 gi|145271568|gb|EDK11479.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittII]
          Length = 575

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  + +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMALEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDELNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         I++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 YFADFQYLFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574


>gi|330969009|gb|EGH69075.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 571

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/557 (31%), Positives = 281/557 (50%), Gaps = 20/557 (3%)

Query: 45  RVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
           R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I GD+D D
Sbjct: 24  RLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLIVGDFDAD 79

Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           GA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITVD G +S 
Sbjct: 80  GATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITVDNGISSV 139

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F VL+ + 
Sbjct: 140 EGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIFYVLMALR 199

Query: 224 RILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPG 278
             LR+            +L  LLDLVAL +V DVVPL   NR  V +GLM  R  +  PG
Sbjct: 200 ARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAGRARPG 259

Query: 279 LKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           L+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +A++LD
Sbjct: 260 LRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAREMAVQLD 319

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
            LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+RLKE++ RP
Sbjct: 320 ELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKERYHRP 378

Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVERVNFGR 455
           + A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL++   NF  
Sbjct: 379 TIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSLPEENFPA 438

Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
               F +     +     T     DG L     ++ L   L +AGP+G   P P+F    
Sbjct: 439 FAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPLFHG-V 497

Query: 516 HKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
            +L   RVV   HL+M  +++  S  L  IAF V      +       + + +   L +N
Sbjct: 498 FQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVELAYKLDLN 553

Query: 575 YWRGSKRCQLRVLDASP 591
            +RG++  QL V+  +P
Sbjct: 554 EFRGNETVQLMVVHIAP 570


>gi|319899958|ref|YP_004159686.1| exonuclease RecJ [Bacteroides helcogenes P 36-108]
 gi|319414989|gb|ADV42100.1| exonuclease RecJ [Bacteroides helcogenes P 36-108]
          Length = 571

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 272/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  + Q+  I  ++ R+LV R + +   A+ F  P +  L  DP +
Sbjct: 4   KWNYQPITSEQTEASQQLAQELGISPVLGRLLVERGIHTATDARKFFRPQLPDLY-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+++GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNRAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSIKGVDYAAESGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPASAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDL A++   D+V
Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLCAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + G+KA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGMKAIIDVCGLAEKDITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A  +++   + + +   IV+
Sbjct: 298 GKEAVDLLTEKDFSTALEKAGQINQYNETRKDLDKSMTEEA-NQIVADLEGLSERRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F+ F    +    T+ V  I+  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTQRFEDFVAKHILPEQTSAVININAEIDFRDITPKFC 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNVKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570


>gi|293569806|ref|ZP_06680893.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1071]
 gi|291587554|gb|EFF19431.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1071]
          Length = 765

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/581 (30%), Positives = 277/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I EG QLIITVD G    DA+ YA   G+DVI+ DHH++      AYA
Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                +  LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPVEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   +      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + ++A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRSIE  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L+  P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   + ++I+ +     HL+       S+ L A+AF  +G
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T   E L      ++ V G L +N W G K+ QL V D S 
Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558


>gi|283788450|ref|YP_003368315.1| single-stranded DNA-specific exonuclease [Citrobacter rodentium
           ICC168]
 gi|282951904|emb|CBG91622.1| single-stranded DNA-specific exonuclease [Citrobacter rodentium
           ICC168]
          Length = 577

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 181/566 (31%), Positives = 286/566 (50%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V    A+D L  S++ ++P    L+  DKA   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRS--ARD-LERSVKGMLP-WQQLSGVDKAVDILYNAFREGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +     N     +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLGMRALGCNNVGYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  + +A+  GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDHASALGIPVVVTDHHLPGDTLPAAQAIINPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTYLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEVSNRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSRDALPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +   + +   +       DG L+A+ + + +  +L  AGP+G   P
Sbjct: 437 LEEAKFDLFQQRFGELVTDWLDPSLLQGEIISDGPLSAAEMTMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  T   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTTCWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + +  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|327481450|gb|AEA84760.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas stutzeri
           DSM 4166]
          Length = 571

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/563 (31%), Positives = 280/563 (49%), Gaps = 20/563 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V+       L+  +  L+P    L   D A   +V+A+   ++I+  
Sbjct: 18  LPPLLQRLYAARGVTCAEE---LDKGLARLIPY-KQLKCIDAAVELLVEALEKRQRILFV 73

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA + ++ +  L      + +  +P+R   GYG  P ++   +     L++TVD
Sbjct: 74  GDFDADGATASSVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPDLLVTVD 133

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S D +  A   G+ V+V DHH    E   A A+VNPN+ +       +   GV+F 
Sbjct: 134 NGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPECAFPSKCIAGVGVIFY 193

Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           VL+ +   LR+ +          +L  LLDLVAL +V DVVPL   NR  V +GL   R 
Sbjct: 194 VLLALRARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIRA 253

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PGL+A++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D      
Sbjct: 254 GRARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALARD 313

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LN++R+ +E  M  +A A++     +      + +    WH G++G+LA+RLK
Sbjct: 314 MATQLDELNKDRKAIEQGMQREALAQLKDLPLE-DLPFGLCLFEPDWHQGVIGILASRLK 372

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449
           E++ RP+ A +   DG   GS RS+ GF I   +    A   G++ K GGHAMAAGL++ 
Sbjct: 373 ERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSLP 432

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           + NFG     F       +     T     DG L+    ++ L   L +AGP+G   P P
Sbjct: 433 QANFGAFAAAFDAEVRRQLCEDDLTGRLLTDGQLSVEEFHLELARALRNAGPWGQHFPEP 492

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     +L   R+V   HL++  +S+    TL  IAF V      E       +   + 
Sbjct: 493 MFHG-VFQLMQQRIVGERHLKLVLKSECGSLTLDGIAFNVDR----EIWPNPTVRWAELA 547

Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591
             L VN +RG +  QL V   +P
Sbjct: 548 YKLDVNEYRGQESVQLMVAHIAP 570


>gi|119356522|ref|YP_911166.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353871|gb|ABL64742.1| exonuclease RecJ [Chlorobium phaeobacteroides DSM 266]
          Length = 574

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 173/587 (29%), Positives = 272/587 (46%), Gaps = 19/587 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +RW  L+  E       ++    +   ++R L NR + + D AKDF  PSI  L P P +
Sbjct: 4   YRWKLLMPDE--QMVSHLSGAINVSTPLSRALCNRGIATFDEAKDFFRPSIHQL-PSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D  +A  R+  A+   EKIM++GDYDVDG    AL+  FL       + YI DR  +G
Sbjct: 61  FKDMLRAVDRVADALEKREKIMLYGDYDVDGTTGTALLYLFLQERGAEVSYYINDRFTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +E  +     LIITVDCG  + + +    + GIDVI+ DHH+   E  PAYA+
Sbjct: 121 YGLSREGIETAVARNTGLIITVDCGIRAEEQILLCNDHGIDVIICDHHE-PHELPPAYAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP   D       LC  GV F  +  I   L                DLVA+AT  D+V
Sbjct: 180 LNPKLGDCSYPFRELCGCGVAFRFIQAIAEQLD-----TGMESWQKYFDLVAIATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L   NR YV +GL   R      L  ++  +N+    ++   + + I P INA GR+  
Sbjct: 235 VLEKENRTYVREGLQRIRTSPRSSLAQMLGIMNVDADMMSMFTIAFGIAPRINAAGRMES 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L  + L+SD  ++ +  A +L+ LN  RR +++ +  QAE  +          S IV+
Sbjct: 295 ATLAVKWLLSDSVEDSQQHAGELEQLNALRRKIDAEIFIQAEKMIAGHFASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+++ EK+  P+  +     G   GS RS++G +I +++    E   
Sbjct: 353 YDEEWHLGVLGIVASKMLEKYYLPTVIMGNMN-GLVKGSVRSVDGLNIYEVLQECGEY-- 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG+T+   N       F +   ++ P  +      ID VL    V    +
Sbjct: 410 LEQFGGHNQAAGITLRPENLAGFRKRFDEICRDLQPVELRQKEVLIDSVLALEDVTDKFM 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++L    PYG GN  P+F      LQ   R++   H++ +   +       I F      
Sbjct: 470 NVLAEFAPYGYGNREPLFVSDQVLLQGRPRLLKERHVKFSVRDKHDRIFDVIGF--DRRD 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK 599
           + E L  S    + +   L    W   +  Q+R+ D S  +   + +
Sbjct: 528 IYEDLAASNTPVVAMVYSLEKRSWNNREHWQIRLKDLSITQDQPWKE 574


>gi|331684518|ref|ZP_08385110.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H299]
 gi|331078133|gb|EGI49339.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H299]
          Length = 577

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYRLDINEFRGNRSLQIIIDNIWPI 577


>gi|121533606|ref|ZP_01665433.1| single-stranded-DNA-specific exonuclease RecJ [Thermosinus
           carboxydivorans Nor1]
 gi|121307597|gb|EAX48512.1| single-stranded-DNA-specific exonuclease RecJ [Thermosinus
           carboxydivorans Nor1]
          Length = 570

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/576 (30%), Positives = 279/576 (48%), Gaps = 21/576 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
           +  +          I  +  I  +VA++L+NR + S++ A  FLN  +  L  DP  L  
Sbjct: 7   IWRVAAADRALQAEIAGQLGITPLVAQILINRGINSVEAADAFLNAGVERLH-DPFALKG 65

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
              A  RI QA+++ EKI+I+GDYDVDG  + AL+ R LS        Y+PDR  +GYG 
Sbjct: 66  MAAAIERIRQALHSKEKIVIYGDYDVDGITASALLYRVLSQLGAAVAYYVPDRFSEGYGL 125

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N + ++     GA LIITVDCG T+ + +        D+I+ DHH+  +    A A++NP
Sbjct: 126 NITALQNLCRAGADLIITVDCGITAVNEVAAIRG-EADIIITDHHEPGAAVPAALAVINP 184

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            + D    +  L   GV F +   +++   +        +L   LDLVA+ TV D+VPL+
Sbjct: 185 KQPDCPYPEKALAGVGVAFKLCQALWQDAGR-----PVDELYKYLDLVAVGTVADLVPLV 239

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNL 316
           G NR  V +GL       N GL+AL+         +    + + + P +NA GR+  +  
Sbjct: 240 GENRIIVREGLNRLPATENAGLRALVAVCGFTDGRMDTGRIAFGLAPRLNAAGRVSHALS 299

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              +LI+DD+     +A +LD  N  RR +E A+  Q E  +     D++   V+VV  +
Sbjct: 300 AVEMLITDDALFAGEVAKELDAANAERRRIEDAIRVQVEEMLA--GTDLEANKVLVVAAE 357

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++G++A+R+ EKF RP+  IS  E+G G GS RSI GF+I    +      +L++
Sbjct: 358 DWHHGVIGIVASRIVEKFYRPTLIIS-IENGVGRGSARSIRGFNI--FEALCRSSDLLLR 414

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH+ AAG ++   N   L       A  ++      PV +ID  +    + + L+  L
Sbjct: 415 FGGHSAAAGFSILPENVDELRRRLNALAAEVLTPDDFRPVIQIDVPVMLRDITLPLLAEL 474

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
               PYG GNP PV A  N ++   R +    +HL++    +     + + +        
Sbjct: 475 NRLAPYGFGNPAPVLACKNIQVLEARRIGADGSHLKLRVCHEGCPG-EVVMWNRGDL--- 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     + +T    VN W+G    QLR  D  
Sbjct: 531 -ADKIPVNSLVAMTFFPEVNEWQGRLSIQLRASDIK 565


>gi|261820183|ref|YP_003258289.1| ssDNA exonuclease RecJ [Pectobacterium wasabiae WPP163]
 gi|261604196|gb|ACX86682.1| single-stranded-DNA-specific exonuclease RecJ [Pectobacterium
           wasabiae WPP163]
          Length = 584

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/573 (32%), Positives = 277/573 (48%), Gaps = 29/573 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V        L  S+  L+ +  +L+  DKA   +  A+     I+I 
Sbjct: 20  VPPLLRRLYAQRGVKGAQE---LERSLSGLL-NYRLLSGIDKAIDLLQLALAEKRCIVIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S  L +  L      N    +P+R  DGYG +P+++ +    GA+LI+TVD
Sbjct: 76  GDFDADGATSTTLAVLALRSMGGANVKYLVPNRFEDGYGLSPAVVAQAAALGAELIVTVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A++NPN  D       L   GV F 
Sbjct: 136 NGISSHAGVEDAHRRGISVLVTDHHLPGETLPDADAMINPNLPDCAFPSKALAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           +++ ++  LR  +               +L  LLDLVAL TV DVVPL   NR  V +GL
Sbjct: 196 LMMALFVRLRDSDWFTQPLFTKQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 255

Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R     PG++AL+E  N   S + A +LG+ IGP +NA GR+ +  +G  LL+S+D 
Sbjct: 256 NRIRAGECRPGIRALLEVANRDASQLVASDLGFAIGPRLNAAGRLDDMTVGVELLLSNDI 315

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385
            +  MLA  LD LNQ+RR +E  M  +A     + +    +    + +    WH G+VG+
Sbjct: 316 TQARMLANDLDGLNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGI 375

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443
           LA+R+KE+F RP  A +   DG   GSGRSI G  +   +        G++ K GGHAMA
Sbjct: 376 LASRIKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLYPGMMDKFGGHAMA 435

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502
           AGL++    F      F +     +       V   DG L    +N ++  +ML  AGP+
Sbjct: 436 AGLSLHETQFEDFRQRFGELVSEWLDPSQLEGVVWSDGELALPELNLLSTAEMLRYAGPW 495

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558
           G   P P F     ++   R++   HL+  FE   +      L  IAF +  T   +   
Sbjct: 496 GQAFPEPTFDGR-FRILQPRLLKERHLKAMFEPIGATGTVPLLDGIAFNIDTTIWPD--- 551

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               K + +   L +N +RG +  QL +    P
Sbjct: 552 -PSIKEVEMVYRLDINEFRGKRSVQLLIQHLWP 583


>gi|284105198|ref|ZP_06386191.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830149|gb|EFC34410.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 582

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 189/575 (32%), Positives = 288/575 (50%), Gaps = 18/575 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W     ++   R  A+     +  + A VL  R V   + AK +L  S      DP  L 
Sbjct: 24  WRVRSVEQ--ERVAALAGVLGLSPLTATVLCGRGVVEPEQAKAWLASS-GGSTHDPFALP 80

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D ++A  R+  AI   E+I  +GDYDVDG A+ +L + F       A +YIPDR  +GYG
Sbjct: 81  DMERAVDRLHLAIQRCERICFYGDYDVDGMAATSLHLLFWRSVGAQAEVYIPDRQEEGYG 140

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            + S + K  + G  L++T DCG+TSY  ++ A + G+DVIV DHHQ++S      A +N
Sbjct: 141 LHESAIRKLGHGGVSLLLTADCGTTSYREIEVARSLGMDVIVTDHHQLQSRMPEPVAFIN 200

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R D +     LC+ G+ + V+    R     +       + S  DLVAL+++ D+VPL
Sbjct: 201 PYRPDSVYPFQGLCSGGLAYKVVEAYARKYGAADV-----PVESFRDLVALSSIADMVPL 255

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
              NR  V  GL    +    G++AL + + ++   +A  +G+ + P +NA GR+  + L
Sbjct: 256 RDENRVLVRDGLAQVAQGNRCGIRALTQDLGLNGTCSAGTIGFRVAPRLNAAGRLAHAGL 315

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G RLL +D       LA +L+ LN+ RR +E AM  +A A+V    +   Q   IVV  +
Sbjct: 316 GVRLLTADSEPVALQLAQQLEELNRRRREIEEAMTREAIAQV----EAGDQPHAIVVGAE 371

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G+VG++AARL E++ RP+  ++F+ DG G GS RS+ GFD+ + +        LV 
Sbjct: 372 GWHSGVVGIVAARLVERYHRPAAVVAFDRDGLGKGSVRSVAGFDVCQALRQCQR--DLVA 429

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH MAAGLTV R  +      F +     +   +  P   +D  +  + V    +  L
Sbjct: 430 FGGHPMAAGLTVRREAYADFSRRFGEGVEGAMDDSLKVPTLDVDAAVALADVQFPFVREL 489

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           E   P+G GNP P        +   +VV   HL++      S  L++I FR+ G      
Sbjct: 490 ERLQPFGMGNPEPTLMSRGVSVLEKKVVGDNHLKLVVRQPGSVPLESIGFRMGGLAHA-- 547

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + +   R+       +N W+GS R QLR+ D   
Sbjct: 548 -IDAGHGRIDAVFTPELNEWKGSTRIQLRLRDVRV 581


>gi|163750317|ref|ZP_02157558.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella benthica
           KT99]
 gi|161329989|gb|EDQ00974.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella benthica
           KT99]
          Length = 574

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 285/565 (50%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +   ++ ++  +R  + +      + ++  L+  P  +   D A++ I   I ++  I+I
Sbjct: 19  SFSPLLKQIYASRGTTAEEC----DLTLSRLLR-PNTMKGLDIASKIIADGIRDNRAILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S  + M  L        +  IP+R   GYG +P ++    ++GA+L+ITV
Sbjct: 74  MGDFDADGATSTCVCMLALKMMGASKIDYLIPNRFDFGYGLSPEIVAVAHSKGAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH        A A+VNPN++D       +   GV F
Sbjct: 134 DNGISSVEGVAAAKALGMQVVITDHHLPGKAIPDADAIVNPNQVDCGFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ N          +L  LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMSALRAELRQRNWYQEQGIIEPNLAHLLDIVALGTVADVVALDANNRILVAAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ DD     
Sbjct: 254 AGRCRVGITALLEVAKRNPAKIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMITAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LN  RR +E+ M ++A   + + + ++      I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDDLNAQRRDLEADMQQEALKSLESVELNEASLPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +K+++ RP  A +   +G+  GS RSI+G  +  ++    +   G+++K GGHAMAAGL+
Sbjct: 374 IKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F      F +    ++     T  F  DG L A+ +N+ +   L +AGP+G   P
Sbjct: 434 LRAKDFETFELAFDQAVRELLKLEQLTGEFVTDGDLPAADMNLTVASELRNAGPWGQEFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + K+   R+V   HL++  E++  +T L AIAF +      +  ++       
Sbjct: 494 EPLFDG-HFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKIWPDATIEHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           V   L VN +RG++  QL V    P
Sbjct: 549 VVYKLDVNEFRGNQTVQLMVEQIEP 573


>gi|332344788|gb|AEE58122.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           UMNK88]
          Length = 577

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|256019310|ref|ZP_05433175.1| ssDNA exonuclease RecJ [Shigella sp. D9]
 gi|332280424|ref|ZP_08392837.1| ssDNA exonuclease [Shigella sp. D9]
 gi|332102776|gb|EGJ06122.1| ssDNA exonuclease [Shigella sp. D9]
          Length = 577

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTFYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|82545485|ref|YP_409432.1| ssDNA exonuclease RecJ [Shigella boydii Sb227]
 gi|81246896|gb|ABB67604.1| ssDNA exonuclease [Shigella boydii Sb227]
 gi|320184564|gb|EFW59365.1| Single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           CDC 796-83]
 gi|323183446|gb|EFZ68843.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           1357]
 gi|332090939|gb|EGI96030.1| single-stranded-DNA-specific exonuclease RecJ [Shigella boydii
           3594-74]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|317475628|ref|ZP_07934889.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316908198|gb|EFV29891.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 571

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/582 (28%), Positives = 272/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
           +W  L    E    +  + Q+  I  I+  +LV R ++   A K F  P +  L  DP +
Sbjct: 4   KWNYLPITSEQTEASQRLAQELGISPILGELLVERGITTAAAAKKFFRPQLPDLY-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+++GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSTKGVDYATETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLAEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NQIVAGLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F++F    +    T+ V  I+  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTQRFEEFVSRHILPEQTSAVIDINAEIDFRDITPKFC 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570


>gi|293553447|ref|ZP_06674075.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1039]
 gi|291602324|gb|EFF32548.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1039]
          Length = 765

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/581 (30%), Positives = 277/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I EG QLIITVD G    DA+ YA   G+DVI+ DHH++      AYA
Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                +  LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGRYPFPDLAGVGVAFKVASALLEE-----------PPVEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   +      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + ++A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRSIE  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L+  P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   + ++I+ +     HL+       S+ L A+AF  +G
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGAYQQHLKFVLSDASSQ-LDAVAFG-FG 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T   E L      ++ V G L +N W G K+ QL V D S 
Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558


>gi|300775073|ref|ZP_07084936.1| single-stranded-DNA-specific exonuclease RecJ [Chryseobacterium
           gleum ATCC 35910]
 gi|300506888|gb|EFK38023.1| single-stranded-DNA-specific exonuclease RecJ [Chryseobacterium
           gleum ATCC 35910]
          Length = 602

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/582 (27%), Positives = 267/582 (45%), Gaps = 24/582 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W+    +        ++         +++LV R +     A++F  P++  +  +P +
Sbjct: 35  QKWIYKP-EPDEEVVDRLSSSLGFGTFESKILVLRGIDNYQKAREFFKPNLNDIH-NPFL 92

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132
           + D  KA  RI  AI N EKI+++GDYDVDG  +VALM  +LS        + YIPDR  
Sbjct: 93  MADMQKAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKKYLDYYIPDRNS 152

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     G  LII +DCG  + D + YA+N GID I+ DHH    E   A 
Sbjct: 153 EGYGISTEGIDFAKENGFSLIIALDCGIKALDMINYASNLGIDFIICDHHLPGEEIPNAA 212

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D       L   GV F +   +  I +         +L  L DL+A++   D
Sbjct: 213 AVLDPKRSDCRYPFKELSGCGVGFKLCQGLNTIYKL-----PEAELFELTDLLAISIAAD 267

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V + G NR     GL   R+  N GL+ LI    +S      N+ + I P INA GRI 
Sbjct: 268 IVSMTGENRVLAKMGLKTLRKTRNLGLRLLIPEDKLS-HFEISNIVFEIAPKINAAGRIS 326

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  L++SD+ +    +   +  LN  RR ++      A  +++      +     +
Sbjct: 327 HGKAAVELMVSDNLKHANQIVNDIMNLNDERRELDMNSTLSALNQIIE--SQQETKHTTI 384

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    W+ G++G++A+RL E + +P+   +   +G+ + S RS+  FD+ + +    E  
Sbjct: 385 VYHPEWNKGVIGIVASRLIETYYKPTLVFTDGNNGEMVASARSVSDFDVHEALDMCSEY- 443

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
             +K GGH  AAGL++E+  F    + F++     +      P   ID  +    +N   
Sbjct: 444 -FLKFGGHHAAAGLSMEKDKFDAFKEKFERIVSEKIQEHQKEPSITIDTEIKIDEINREF 502

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTFESQD-SETLQAIAFRV 548
           I+      P+G  N  P+F   N KL   ++ +     HL+   + +     ++ + F  
Sbjct: 503 INFHRKLAPFGPHNMKPIFTLTNQKLSGYVKTMGKDNNHLKFYIKQESTGRNIECVGF-- 560

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               LG+F+   + K   +   L  N+W+G+    L + D  
Sbjct: 561 ---KLGQFVEDFKNKNFDLAFTLEENHWKGNVTHYLNIKDVK 599


>gi|309703252|emb|CBJ02587.1| single-stranded DNA-specific exonuclease [Escherichia coli ETEC
           H10407]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +  +DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPADDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|88706911|ref|ZP_01104610.1| single-stranded-DNA-specific exonuclease RecJ [Congregibacter
           litoralis KT71]
 gi|88698833|gb|EAQ95953.1| single-stranded-DNA-specific exonuclease RecJ [Congregibacter
           litoralis KT71]
          Length = 576

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/563 (32%), Positives = 280/563 (49%), Gaps = 21/563 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P I+ARV   R V        L+ ++  L P P +LT    A  R+ +A+   E+I+I 
Sbjct: 22  LPPILARVFAARGV---QDAGELDLALSALHP-PSLLTGLPAATERLHEALDRDERILIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL ++ L      + +  +P+R   GYG  P ++         LIITVD
Sbjct: 78  GDFDADGATSTALAIKALRQFGASHVDYLVPNRFEFGYGLTPGIVALGAQRQPDLIITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S D +  A   GI+V++ DHH    E   A A+VNPN+         L   GV+F 
Sbjct: 138 NGISSVDGVDAANALGIEVLITDHHLPGKELPRATAIVNPNQTGCAFPSKALAGVGVMFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +L+ +   LR +            L + LDLVAL TV DVVPL   NR  V  GL   R 
Sbjct: 198 LLLALRSRLRDEGWFARRGLETPHLGAFLDLVALGTVADVVPLDHNNRILVEGGLARMRS 257

Query: 274 -QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G+ AL+        +    +LG+  GP +NA GR+ + +LG   L++DD QE   
Sbjct: 258 GRARAGINALLSVAGRDPLLVVASDLGFAAGPRLNAAGRLDDMSLGIECLLADDPQEARR 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390
           +A++LD +N+ R+ +E  M E+A A +     +     + +V+    WH G+VG+LA+R+
Sbjct: 318 IALQLDGMNRERQRIERGMEEEALAALAALRLEDADLPAALVLHDPHWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           K++F RP  A +   +G+  GSGR I G  +  ++        G++ + GGHAMAAGL++
Sbjct: 378 KDRFHRPVIAFAHSGEGELKGSGRGIPGMHLRDLLDEVATGHPGLIDRFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              +F    + F          L   PV   DG L     ++   +ML  AGP+G   P 
Sbjct: 438 PEAHFDDFAEAFTAAVEKA-GGLNLEPVLDSDGELTPEDFDLTTAEMLRQAGPWGQMFPE 496

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     +L+S R+V   HL+M+  +  D  +L AIAF +      +       K + +
Sbjct: 497 PLFDG-VFELRSQRIVGERHLKMSLAKPGDGASLDAIAFGIDVERWPD----PSVKEVRL 551

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L VN++RG +R QL V    
Sbjct: 552 AYRLDVNHFRGERRLQLLVEQIE 574


>gi|188494077|ref|ZP_03001347.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           53638]
 gi|193070560|ref|ZP_03051499.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E110019]
 gi|253772267|ref|YP_003035098.1| ssDNA exonuclease RecJ [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162804|ref|YP_003045912.1| ssDNA exonuclease RecJ [Escherichia coli B str. REL606]
 gi|300906558|ref|ZP_07124249.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           84-1]
 gi|300925127|ref|ZP_07141041.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           182-1]
 gi|301303050|ref|ZP_07209177.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           124-1]
 gi|312972866|ref|ZP_07787039.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           1827-70]
 gi|188489276|gb|EDU64379.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           53638]
 gi|192956143|gb|EDV86607.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E110019]
 gi|242378423|emb|CAQ33204.1| recJ [Escherichia coli BL21(DE3)]
 gi|253323311|gb|ACT27913.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974705|gb|ACT40376.1| ssDNA exonuclease, 5' -> 3'-specific [Escherichia coli B str.
           REL606]
 gi|253978871|gb|ACT44541.1| ssDNA exonuclease, 5' -> 3'-specific [Escherichia coli BL21(DE3)]
 gi|300401597|gb|EFJ85135.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           84-1]
 gi|300418729|gb|EFK02040.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           182-1]
 gi|300841714|gb|EFK69474.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           124-1]
 gi|310332808|gb|EFQ00022.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           1827-70]
 gi|315256775|gb|EFU36743.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           85-1]
 gi|323941587|gb|EGB37767.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E482]
 gi|323960811|gb|EGB56432.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H489]
 gi|323971670|gb|EGB66899.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA007]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|323946622|gb|EGB42645.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H120]
 gi|324119933|gb|EGC13812.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E1167]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|312862866|ref|ZP_07723106.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           vestibularis F0396]
 gi|311101726|gb|EFQ59929.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           vestibularis F0396]
          Length = 744

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/605 (28%), Positives = 288/605 (47%), Gaps = 34/605 (5%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KD 59
           M  + +  +  S   + W     +        + ++H + +  A++   R ++ + A +D
Sbjct: 1   MTGRKYKNMITST--YDWKINTKEPD-AGFFKLAKEHGLAETAAKIAYERGITTEEALED 57

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FL   +  L  DP +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L   
Sbjct: 58  FLKADLSHLH-DPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMM 116

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIV 178
              A +Y+P+R  DGYGPN S+ + FI +    LI+TVD G    +A+ YA  QG+DVIV
Sbjct: 117 GAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIV 176

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238
            DHH + ++   AYA+V+P   D      +L   GV F +   +   +            
Sbjct: 177 TDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP----------- 225

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENL 297
             +LDLVA+ T+ D+V L   NR  V  GL + +     GL+ L+   ++    I+ E +
Sbjct: 226 TEMLDLVAIGTIADMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETV 285

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+ + P +NA GR+ + N    LL   D +E + +A++++  N+ R+ +   + ++A   
Sbjct: 286 GFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTM 345

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
           V           V V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E
Sbjct: 346 VDL------DKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLE 398

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
             +I    +      I    GGHA AAG+T+   N G+L +   ++ ++           
Sbjct: 399 SINI--FHALDDHRDIFTAFGGHAGAAGMTLPEENLGQLSEVLCQYVYDNDIDTSAKNTL 456

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES 535
            +D  L  S +++  I  LE   P+G  N  PVF   +  +   R +     HL+   + 
Sbjct: 457 HLDEELQLSELSLDTIKSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK- 515

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           Q  ++   +AF      L +   Q++G  + +   L VN W G    QL + DA      
Sbjct: 516 QGKDSFDVVAFNKGN--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVDGVQ 571

Query: 596 HFAKK 600
            F  +
Sbjct: 572 LFDFR 576


>gi|194431809|ref|ZP_03064100.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae
           1012]
 gi|194420165|gb|EDX36243.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae
           1012]
 gi|332086817|gb|EGI91953.1| single-stranded-DNA-specific exonuclease RecJ [Shigella boydii
           5216-82]
 gi|332087741|gb|EGI92868.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae
           155-74]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|91212270|ref|YP_542256.1| ssDNA exonuclease RecJ [Escherichia coli UTI89]
 gi|110643040|ref|YP_670770.1| ssDNA exonuclease RecJ [Escherichia coli 536]
 gi|191173245|ref|ZP_03034776.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           F11]
 gi|218559885|ref|YP_002392798.1| ssDNA exonuclease RecJ [Escherichia coli S88]
 gi|218706398|ref|YP_002413917.1| ssDNA exonuclease RecJ [Escherichia coli UMN026]
 gi|237706464|ref|ZP_04536945.1| ssDNA exonuclease RecJ [Escherichia sp. 3_2_53FAA]
 gi|293406391|ref|ZP_06650317.1| ssDNA exonuclease RecJ [Escherichia coli FVEC1412]
 gi|298382127|ref|ZP_06991724.1| single-stranded-DNA-specific exonuclease [Escherichia coli
           FVEC1302]
 gi|300896212|ref|ZP_07114761.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           198-1]
 gi|300995676|ref|ZP_07181204.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           200-1]
 gi|331659022|ref|ZP_08359964.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA206]
 gi|91073844|gb|ABE08725.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           UTI89]
 gi|110344632|gb|ABG70869.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           536]
 gi|190906496|gb|EDV66104.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           F11]
 gi|218366654|emb|CAR04408.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli S88]
 gi|218433495|emb|CAR14398.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli UMN026]
 gi|226899504|gb|EEH85763.1| ssDNA exonuclease RecJ [Escherichia sp. 3_2_53FAA]
 gi|291426397|gb|EFE99429.1| ssDNA exonuclease RecJ [Escherichia coli FVEC1412]
 gi|294494140|gb|ADE92896.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           IHE3034]
 gi|298277267|gb|EFI18783.1| single-stranded-DNA-specific exonuclease [Escherichia coli
           FVEC1302]
 gi|300304784|gb|EFJ59304.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           200-1]
 gi|300359946|gb|EFJ75816.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           198-1]
 gi|307625535|gb|ADN69839.1| ssDNA exonuclease RecJ [Escherichia coli UM146]
 gi|315289445|gb|EFU48840.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           110-3]
 gi|315295680|gb|EFU55000.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           16-3]
 gi|323951669|gb|EGB47544.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H252]
 gi|323957387|gb|EGB53109.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H263]
 gi|324011758|gb|EGB80977.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           60-1]
 gi|331053604|gb|EGI25633.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA206]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|191165982|ref|ZP_03027818.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B7A]
 gi|218555440|ref|YP_002388353.1| ssDNA exonuclease RecJ [Escherichia coli IAI1]
 gi|300815656|ref|ZP_07095880.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           107-1]
 gi|300820696|ref|ZP_07100847.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           119-7]
 gi|307310489|ref|ZP_07590137.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli W]
 gi|331669627|ref|ZP_08370473.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA271]
 gi|331678879|ref|ZP_08379553.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H591]
 gi|190903930|gb|EDV63643.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B7A]
 gi|218362208|emb|CAQ99826.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli IAI1]
 gi|300526960|gb|EFK48029.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           119-7]
 gi|300531585|gb|EFK52647.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           107-1]
 gi|306909384|gb|EFN39879.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli W]
 gi|315062196|gb|ADT76523.1| ssDNA exonuclease, 5' --3'-specific [Escherichia coli W]
 gi|320202552|gb|EFW77122.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           EC4100B]
 gi|323173890|gb|EFZ59519.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           LT-68]
 gi|323377220|gb|ADX49488.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           KO11]
 gi|331063295|gb|EGI35208.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA271]
 gi|331073709|gb|EGI45030.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H591]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|330908924|gb|EGH37438.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           AA86]
          Length = 560

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 5   LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 60

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 61  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 120

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 121 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 180

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 181 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 240

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 241 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 300

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 301 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 360

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 361 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 420

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 421 EEEKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 480

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 481 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 535

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 536 AYKLDINEFRGNRSLQIIIDNIWPI 560


>gi|288799943|ref|ZP_06405402.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333191|gb|EFC71670.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 579

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/585 (29%), Positives = 287/585 (49%), Gaps = 22/585 (3%)

Query: 16  FRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W  L    E I+ A A+ +K  + +I++ +LV R +  +  AK F +P +  L+ +P 
Sbjct: 3   FKWKYLPPNQEEISEAKALGEKLNLSNILSLLLVRRGIKTESAAKRFFHPQLSELI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D D A  R+  A+   E+I+++GDYDVDG  SVAL+ +FL     N   YIPDR  +
Sbjct: 62  LLKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLRQYYSNIEYYIPDRYEE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++       +LII +DCG  + + +  A + GID I+ DHH    E  PA A
Sbjct: 122 GYGVSQKGIDYAYKNDVKLIIILDCGIKAIEEITLAKSLGIDFIICDHHVPDEEMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F ++    +     N       L  LLD  A++   D+
Sbjct: 182 IINPKRPDDTYPFKHLCGCGVGFKLMQAFAK-----NNGISFSRLAPLLDFCAVSIAADL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VP+ G NR     GL    +  + GLKA+I+        ++  ++ + IGP INA GRI 
Sbjct: 237 VPVEGENRILAYHGLKQLNQNPSIGLKAIIDICGLEEKDVSMSDIIFKIGPRINASGRID 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D  +    A  +D  N+ R+ ++  M E+A  +++++ ++ +Q S IV
Sbjct: 297 NGKQSVDLLVEKDYSKALQQAKHIDEYNEQRKDIDKQMTEEA-NQIVSRIENQKQQSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V  + W  G+VG++A+RL E + RP+  ++ ++     GS RSI G D+   +       
Sbjct: 356 VYDENWKKGVVGIVASRLTEIYFRPTIVLT-KDGNLATGSARSIMGVDVYAAIKHC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAGLT+   +  +    FQ++  N +         +ID  ++   ++   
Sbjct: 413 LLLNFGGHTYAAGLTLHWDDIPKFKQRFQEYIENHILPEQKEATLEIDAQIDFKDISKKF 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G  NP P F         + +VV     H+++     + S  +  IAF  
Sbjct: 473 FHDLKRFAPFGPSNPKPRFITKGVFDYGTSKVVGREQEHIKLELVDSKSSHVMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +    ++   RG    +   L  N ++     QL++ D  P+E
Sbjct: 533 SKS--ARYIKSKRG--FDIAYTLEENTFK-RNLVQLQIEDIRPIE 572


>gi|331648638|ref|ZP_08349726.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           M605]
 gi|281179897|dbj|BAI56227.1| ssDNA exonuclease [Escherichia coli SE15]
 gi|331042385|gb|EGI14527.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           M605]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEEKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|147550|gb|AAA62789.1| recJ [Escherichia coli]
          Length = 578

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 23  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 78

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 79  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 138

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 139 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 198

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 199 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 258

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 259 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 318

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 319 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 378

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 379 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 438

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 439 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 498

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 499 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 553

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 554 AYKLDINEFRGNRSLQIIIDNIWPI 578


>gi|15803428|ref|NP_289461.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 EDL933]
 gi|15833018|ref|NP_311791.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. Sakai]
 gi|168747629|ref|ZP_02772651.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753830|ref|ZP_02778837.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760020|ref|ZP_02785027.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766885|ref|ZP_02791892.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775769|ref|ZP_02800776.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778905|ref|ZP_02803912.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785738|ref|ZP_02810745.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC869]
 gi|168800025|ref|ZP_02825032.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC508]
 gi|195936510|ref|ZP_03081892.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. EC4024]
 gi|208807274|ref|ZP_03249611.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813008|ref|ZP_03254337.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821471|ref|ZP_03261791.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400065|ref|YP_002272366.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327834|ref|ZP_03443917.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794842|ref|YP_003079679.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. TW14359]
 gi|261226205|ref|ZP_05940486.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256540|ref|ZP_05949073.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284211|ref|YP_003501029.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O55:H7 str. CB9615]
 gi|12517418|gb|AAG58020.1|AE005519_6 ssDNA exonuclease, 5' --> 3' specific [Escherichia coli O157:H7
           str. EDL933]
 gi|13363236|dbj|BAB37187.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. Sakai]
 gi|187768787|gb|EDU32631.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017956|gb|EDU56078.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003464|gb|EDU72450.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358543|gb|EDU76962.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363798|gb|EDU82217.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369393|gb|EDU87809.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374150|gb|EDU92566.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC869]
 gi|189377663|gb|EDU96079.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC508]
 gi|208727075|gb|EDZ76676.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734285|gb|EDZ82972.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741594|gb|EDZ89276.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161465|gb|ACI38898.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC4115]
 gi|209760598|gb|ACI78611.1| ssDNA exonuclease RecJ [Escherichia coli]
 gi|209760600|gb|ACI78612.1| ssDNA exonuclease RecJ [Escherichia coli]
 gi|209760602|gb|ACI78613.1| ssDNA exonuclease RecJ [Escherichia coli]
 gi|209760604|gb|ACI78614.1| ssDNA exonuclease RecJ [Escherichia coli]
 gi|209760606|gb|ACI78615.1| ssDNA exonuclease RecJ [Escherichia coli]
 gi|217320201|gb|EEC28626.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594242|gb|ACT73603.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli O157:H7
           str. TW14359]
 gi|290764084|gb|ADD58045.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189236|gb|EFW63895.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640535|gb|EFX10074.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. G5101]
 gi|320645782|gb|EFX14767.1| ssDNA exonuclease RecJ [Escherichia coli O157:H- str. 493-89]
 gi|320651082|gb|EFX19522.1| ssDNA exonuclease RecJ [Escherichia coli O157:H- str. H 2687]
 gi|320656578|gb|EFX24474.1| ssDNA exonuclease RecJ [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662098|gb|EFX29499.1| ssDNA exonuclease RecJ [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667173|gb|EFX34136.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. LSU-61]
 gi|326339024|gb|EGD62839.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. 1044]
 gi|326343094|gb|EGD66862.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           O157:H7 str. 1125]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|16130794|ref|NP_417368.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109671|ref|AP_003451.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12
           substr. W3110]
 gi|170082453|ref|YP_001731773.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12
           substr. DH10B]
 gi|194436725|ref|ZP_03068825.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           101-1]
 gi|238902017|ref|YP_002927813.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli BW2952]
 gi|256024598|ref|ZP_05438463.1| ssDNA exonuclease RecJ [Escherichia sp. 4_1_40B]
 gi|300954268|ref|ZP_07166731.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           175-1]
 gi|301643758|ref|ZP_07243796.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           146-1]
 gi|307139579|ref|ZP_07498935.1| ssDNA exonuclease RecJ [Escherichia coli H736]
 gi|331643582|ref|ZP_08344713.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H736]
 gi|2507106|sp|P21893|RECJ_ECOLI RecName: Full=Single-stranded-DNA-specific exonuclease recJ
 gi|887842|gb|AAA83073.1| single-stranded DNA-specific exonuclease [Escherichia coli]
 gi|1789259|gb|AAC75930.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675704|dbj|BAE76957.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K12
           substr. W3110]
 gi|169890288|gb|ACB03995.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12
           substr. DH10B]
 gi|194424207|gb|EDX40194.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           101-1]
 gi|238863575|gb|ACR65573.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli BW2952]
 gi|260448062|gb|ACX38484.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           DH1]
 gi|300318729|gb|EFJ68513.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           175-1]
 gi|301077857|gb|EFK92663.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           146-1]
 gi|315137491|dbj|BAJ44650.1| ssDNA exonuclease RecJ [Escherichia coli DH1]
 gi|315614952|gb|EFU95590.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           3431]
 gi|331037053|gb|EGI09277.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           H736]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|311745444|ref|ZP_07719229.1| single-stranded-DNA-specific exonuclease RecJ [Algoriphagus sp.
           PR1]
 gi|126577995|gb|EAZ82215.1| single-stranded-DNA-specific exonuclease RecJ [Algoriphagus sp.
           PR1]
          Length = 574

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/582 (29%), Positives = 275/582 (47%), Gaps = 19/582 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           + W       G      + ++  +  I+A +L+NR V   D AK++  PS+  L  DP +
Sbjct: 3   YVWKQKPRATGT-LVEQLGREINVNPILANMLINRGVDNFDTAKNYFRPSLSKLH-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  +A  RI +AI   EKI+++GDYDVDG  +VAL+  +L       + YIPDR  +G
Sbjct: 61  MKDMTEAIERIEKAIQQDEKILVYGDYDVDGTTAVALVYSYLQSFYSKVDFYIPDRYKEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +        +LII +DCG  + + +  A   G+D I+ DHH    E   A A+
Sbjct: 121 YGISSKGVRFAAENNYKLIIALDCGIKAIEKVALAKELGVDFIICDHHTPGDELPQAVAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  R D       L  AGV F ++    +I   +        L + LDL+ ++   D+V
Sbjct: 181 LDAKRKDCEYPYKELSGAGVGFKLIQAHAKIREIEESA-----LYAYLDLLVVSIAADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P+ G NR     GL        PGLKAL+    I   I   ++ + IGP INA GR+  +
Sbjct: 236 PITGENRILAYYGLERINNTPRPGLKALMLSAKIEKEIGISDIVFKIGPRINASGRLEHA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LLIS D       A  +D +N  RR  +  + ++A   +  +    +  S  V+ 
Sbjct: 296 KASVELLISTDLDLAIERAKVVDEVNTTRRNFDENITKEAFEMIAEREASNEWNST-VLF 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++A+R  EK+ RP+  ++ E +GK  GS RS+  F+I + +S     G+L
Sbjct: 355 KEDWHKGVIGIVASRCIEKYYRPTIILT-ESNGKATGSARSVVDFNIYEAISEC--AGLL 411

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAGLT+           F+K   + +  +   PV +ID  L    +N    +
Sbjct: 412 DQFGGHKYAAGLTLSVDKVEDFQIMFEKVVKSRIEEVHRKPVIEIDDELLLDQINYKFYN 471

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ--AIAFRVYGT- 551
           +L+   P+G GN  PVF       +++ ++   HL+     QD +  +   + F +    
Sbjct: 472 ILKQMAPFGPGNTEPVFRISQAYAENVIILKDKHLRFNIV-QDGQVTKPVCLGFGLADKT 530

Query: 552 --PLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             P    +   +GK R  +   +  N++R     QL V D  
Sbjct: 531 KDPDHTIVKMLQGKMRFDIVAEMRENFFRDKSSLQLYVKDIK 572


>gi|157155215|ref|YP_001464229.1| ssDNA exonuclease RecJ [Escherichia coli E24377A]
 gi|209920346|ref|YP_002294430.1| ssDNA exonuclease RecJ [Escherichia coli SE11]
 gi|218696487|ref|YP_002404154.1| ssDNA exonuclease RecJ [Escherichia coli 55989]
 gi|260857015|ref|YP_003230906.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli
           O26:H11 str. 11368]
 gi|260869569|ref|YP_003235971.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli
           O111:H- str. 11128]
 gi|309793964|ref|ZP_07688389.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           145-7]
 gi|157077245|gb|ABV16953.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E24377A]
 gi|209913605|dbj|BAG78679.1| ssDNA exonuclease [Escherichia coli SE11]
 gi|218353219|emb|CAU99136.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli 55989]
 gi|257755664|dbj|BAI27166.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli
           O26:H11 str. 11368]
 gi|257765925|dbj|BAI37420.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli
           O111:H- str. 11128]
 gi|308122371|gb|EFO59633.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           145-7]
 gi|323154773|gb|EFZ40971.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           EPECa14]
 gi|323180336|gb|EFZ65888.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           1180]
 gi|324017289|gb|EGB86508.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           117-3]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|282881731|ref|ZP_06290394.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304490|gb|EFA96587.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella
           timonensis CRIS 5C-B1]
          Length = 578

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/590 (29%), Positives = 285/590 (48%), Gaps = 22/590 (3%)

Query: 16  FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W       E    A  +  K  I  I+A +L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYVPPTSEETKAAKELGDKLNINTILALLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  SVAL+ +FL     N + YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLQQFYSNIDYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   +E     G +LII +DCG  + D + YA + GID I+ DHH       PA A
Sbjct: 122 GYGVSKKSLEYARETGVKLIIILDCGIKATDEIAYAKSLGIDFIICDHHVPDEVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HL   GV F ++    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRPDDTYPFKHLSGCGVGFKLMQAFAK-----NNNIPFSRLIPLLDFCAVSISADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLKA+I+  N  +  I+  ++ + IGP INA GR+ 
Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSVGLKAIIDICNLGNRDISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D       A  +D  N+ R+ ++  M E+A   ++++ ++ +  S IV
Sbjct: 297 NGKESVDLLVEKDIASAIRQAKHIDEYNEQRKDIDKQMTEEA-NLIVSKLENQKHHSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++ + +    GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLTRDGE-FATGSARSVTGFDVYAAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +LV  GGH  AAGLT+   +       FQK+    +    T P+  ID +++   +   L
Sbjct: 413 LLVNFGGHTYAAGLTLRWDDIKTFRTRFQKYVDEHILPEQTEPIIDIDAIIDFKDITKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
              L+   P+G GNP P+F+        + +VV     H+++     + S  +  IAF  
Sbjct: 473 HQELKKFSPFGPGNPKPMFSTIGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
             +           +   +   L  N ++     QL++ D  P EG  + 
Sbjct: 533 SAS----ARYIKSKRSFDIAYTLEDNVFK-RNAVQLQIEDIRPTEGEDYQ 577


>gi|193063509|ref|ZP_03044598.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E22]
 gi|194426412|ref|ZP_03058967.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B171]
 gi|260845560|ref|YP_003223338.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli
           O103:H2 str. 12009]
 gi|293449214|ref|ZP_06663635.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B088]
 gi|192930786|gb|EDV83391.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E22]
 gi|194415720|gb|EDX31987.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B171]
 gi|257760707|dbj|BAI32204.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli
           O103:H2 str. 12009]
 gi|291322304|gb|EFE61733.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B088]
 gi|323162517|gb|EFZ48367.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E128010]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|170018862|ref|YP_001723816.1| ssDNA exonuclease RecJ [Escherichia coli ATCC 8739]
 gi|169753790|gb|ACA76489.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           ATCC 8739]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ +    P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDSIWPI 577


>gi|74313450|ref|YP_311869.1| ssDNA exonuclease RecJ [Shigella sonnei Ss046]
 gi|73856927|gb|AAZ89634.1| ssDNA exonuclease [Shigella sonnei Ss046]
 gi|323167902|gb|EFZ53592.1| single-stranded-DNA-specific exonuclease RecJ [Shigella sonnei 53G]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EADKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|301027415|ref|ZP_07190752.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           69-1]
 gi|300394923|gb|EFJ78461.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           69-1]
          Length = 577

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHVGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  PV
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPV 577


>gi|323935876|gb|EGB32175.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           E1520]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  + +A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVAHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|322516623|ref|ZP_08069537.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           vestibularis ATCC 49124]
 gi|322124893|gb|EFX96317.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           vestibularis ATCC 49124]
          Length = 744

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/605 (28%), Positives = 288/605 (47%), Gaps = 34/605 (5%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KD 59
           M  + +  +  S   + W     +        + ++H + +  A++   R ++ + A +D
Sbjct: 1   MTGRKYKNMITST--YDWKINTKEPD-AGFFKLAKEHGLAETAAKIAYERGITTEEALED 57

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FL   +  L  DP +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L   
Sbjct: 58  FLKADLSHLH-DPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMM 116

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIV 178
              A +Y+P+R  DGYGPN S+ + FI +    LI+TVD G    +A+ YA  QG+DVIV
Sbjct: 117 GAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIV 176

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238
            DHH + ++   AYA+V+P   D      +L   GV F +   +   +            
Sbjct: 177 TDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP----------- 225

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENL 297
             +LDLVA+ T+ D+V L   NR  V  GL + +     GL+ L+   ++    I+ E +
Sbjct: 226 TEMLDLVAIGTIADMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETV 285

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+ + P +NA GR+ + N    LL   D +E + +A++++  N+ R+ +   + ++A   
Sbjct: 286 GFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTM 345

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
           V           V V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E
Sbjct: 346 VDL------DKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLE 398

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
             +I    +      I    GGHA AAG+T+   N G+L +   ++ ++           
Sbjct: 399 SINI--FHALDDHRDIFTAFGGHAGAAGMTLPEENLGQLSEILCQYVYDNDIDTSAKNTL 456

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES 535
            +D  L  S +++  I  LE   P+G  N  PVF   +  +   R +     HL+   + 
Sbjct: 457 HLDEELQLSELSLDTIKSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK- 515

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           Q  ++   +AF      L +   Q++G  + +   L VN W G    QL + DA      
Sbjct: 516 QGKDSFDVVAFNKGN--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVDGVQ 571

Query: 596 HFAKK 600
            F  +
Sbjct: 572 LFDFR 576


>gi|331664465|ref|ZP_08365371.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA143]
 gi|331058396|gb|EGI30377.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA143]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|293416145|ref|ZP_06658785.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B185]
 gi|291432334|gb|EFF05316.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B185]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|254037936|ref|ZP_04871994.1| ssDNA exonuclease [Escherichia sp. 1_1_43]
 gi|226839560|gb|EEH71581.1| ssDNA exonuclease [Escherichia sp. 1_1_43]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +IM+ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+A+ + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|218701601|ref|YP_002409230.1| ssDNA exonuclease RecJ [Escherichia coli IAI39]
 gi|218371587|emb|CAR19426.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli IAI39]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +IM+ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+A+ + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|218128557|ref|ZP_03457361.1| hypothetical protein BACEGG_00127 [Bacteroides eggerthii DSM 20697]
 gi|217989281|gb|EEC55595.1| hypothetical protein BACEGG_00127 [Bacteroides eggerthii DSM 20697]
          Length = 571

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/582 (28%), Positives = 272/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
           +W  L    E    +  + Q+  I  I+  +LV R ++   A K F  P +  L  DP +
Sbjct: 4   KWNYLPITSEQTEASQRLAQELGISPILGELLVERGITTAAAAKKFFRPQLPDLY-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+++GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 63  MKDMDVAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  +GID I+ DHH       PA A+
Sbjct: 123 YGVSTKGVDYATETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLAEKEITVSDIVFKIGPRINASGRIQN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++  M E+A  +++   + +     IV+
Sbjct: 298 GKEAVDLLTEKDFLLALEKAGQINQYNETRKDLDKTMTEEA-NQIVAGLEGLADRRSIVL 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K + +     +
Sbjct: 357 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N       F++F    +    T+ V  I+  ++   +     
Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTQRFEEFVSRHILPEQTSAVIDINAEIDFRDITPKFC 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
           + L+   P+G  N  PVF   N     + +VV     H+++     + +  +  IAF   
Sbjct: 474 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570


>gi|320175920|gb|EFW50998.1| Single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae
           CDC 74-1112]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|284008431|emb|CBA74883.1| single-stranded-DNA-specific exonuclease [Arsenophonus nasoniae]
          Length = 576

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/567 (32%), Positives = 285/567 (50%), Gaps = 20/567 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  I+ R+   R V  +   + L    + L+ +   L   + A + ++ A+    +I++
Sbjct: 19  HLSPILRRLYAMRGVLSE---NELETGAKGLL-NYQSLNGIETAVQLLITALNEHWQIIV 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +R LS     + +  +P+R  DGYG +P ++++ I   AQLIITV
Sbjct: 75  VGDFDADGATSTALTLRALSAMGYRHFDYLVPNRFEDGYGLSPQVVDEVIKRKAQLIITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S++ +  A   GI VI+ DHH        A A++NPN  D       L   GV F
Sbjct: 135 DNGISSHEGVAVAHRHGIKVIITDHHLPGENLPCAEAIINPNLADCHFPSKALAGVGVSF 194

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ            +L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 195 YLMSALRAALRQTGWFEQQSRKMPNLAELLDLVALGTVADVVPLDSNNRILVYQGLNRIR 254

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+KALIE      S + A +LG+ IGP +NA GR+ + ++G  LL++DD     
Sbjct: 255 AGRSCVGIKALIEVSKRDVSRLVANDLGFSIGPRLNAAGRLDDMSIGVELLLTDDIVHAR 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA +LD LN+ RR +E  M ++A       +    Q  + + +    WH G+VG+LA+R
Sbjct: 315 KLANELDSLNRTRREIEQDMQQEAWHIFSQIEKKRHQIPNGLALYHPEWHQGVVGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   +G   GSGRSI G  +   +        G+++K GGHAMAAGLT
Sbjct: 375 IKERFHRPVIAFAPAGEGILKGSGRSINGLHLRDALERLDTLNPGLILKFGGHAMAAGLT 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F +  + F      ++   +   V   DG LN   +++ + +++ + GP+G   P
Sbjct: 435 LEEQKFTQFQENFSNLMAELLDNDMLEGVIWSDGELNNEELSLDIAELIRNGGPWGQAFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       +  IAF +      +    +  K + 
Sbjct: 495 EPIFDGK-FRLLQQRLVGDCHLKVMLEPLAGGPMIDGIAFNIDTAYWPD----NSIKMVQ 549

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPVE 593
           +   L VN +RG++  QL +    P E
Sbjct: 550 LAYKLDVNEYRGNRNIQLLIQHLWPCE 576


>gi|218246129|ref|YP_002371500.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8801]
 gi|257059178|ref|YP_003137066.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8802]
 gi|218166607|gb|ACK65344.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8801]
 gi|256589344|gb|ACV00231.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8802]
          Length = 655

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/581 (28%), Positives = 279/581 (48%), Gaps = 22/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW          +   + +   +  ++A+V++NR +      + +L+P +  L      
Sbjct: 7   QRWEIATPNP--EQVKQLIEATGLSPLIAKVIINRGIDTVKSTQVYLDPEVENLPSPLKE 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D   +   + +AI   EKI I GDYD DG  S AL++R  S    +    IP R+ DG
Sbjct: 65  FPDLATSITLLQEAITTGEKIAICGDYDADGMTSTALLLRAFSQLGADIYYEIPSRMKDG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  ++E F ++G  +I+TVD G ++Y  +Q A   G+ VI+ DHH +  +  PA A+
Sbjct: 125 YGINERIVEAFADQGVGVILTVDNGISAYQPIQRAIELGLTVIITDHHDLPEKLPPADAI 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP  L + S    L   GV +++ V   + L           +  LL+L  L T+ D+ 
Sbjct: 185 LNPKLLPENSPYRGLAGVGVAYILAVTTAQSLGITQGF-----IDPLLELFTLGTIADLA 239

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINAGGRI 311
           PLIG+NR ++ +GL    +    G++AL++          +  +++G+ +GP INA GRI
Sbjct: 240 PLIGVNRRWLKRGLRRLPKSQLAGVQALMQVAGVSEEQKQLKPDDIGFRLGPRINAIGRI 299

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G+  +   LL +DD       AM+ + +N  R+ M   +  +A   V       ++  V+
Sbjct: 300 GDPQMIIELLTTDDPGIALERAMQCEQINAKRKAMCEQIELEAVHLVENTPIPWKKDRVL 359

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV    WH G++G++A+RL E++G P F  ++EE   K  GS R I+ F+I + + F   
Sbjct: 360 VVVQSNWHHGVIGIVASRLVERYGVPVFIGTYEENPSKIRGSARGIKEFNIFEALDFC-- 417

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L K GGH  A G ++   N          FAH  +      P+  ID   N   +  
Sbjct: 418 GDLLGKYGGHKAAGGFSLLAKNLDHFKQRLSTFAHQYLEPHHLKPLVSIDAEANFDQLTP 477

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVY 549
            L   ++   P+G GN  PVF  PN ++   R+V   HL++ F +  +   ++A+A+R  
Sbjct: 478 LLHQSIDQLQPWGIGNEFPVFWTPNVQVLEQRIVGKNHLKLVFCQDNNENQMKAVAWR-- 535

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               GE+      KR+ +   L  N W G    ++ ++   
Sbjct: 536 ---WGEYF--PLPKRVDIAYKLKENNWNGETNIEIEIIGIR 571


>gi|300928172|ref|ZP_07143714.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           187-1]
 gi|300463812|gb|EFK27305.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           187-1]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFLSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|198276633|ref|ZP_03209164.1| hypothetical protein BACPLE_02829 [Bacteroides plebeius DSM 17135]
 gi|198270158|gb|EDY94428.1| hypothetical protein BACPLE_02829 [Bacteroides plebeius DSM 17135]
          Length = 573

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 168/585 (28%), Positives = 276/585 (47%), Gaps = 22/585 (3%)

Query: 15  GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
            ++W       +    A A++++  I  I+ ++L  R + S   AK F  P +  L  DP
Sbjct: 2   NYKWNYQPPTLQEREAARALSREIGISPILCKLLQERGIHSAAEAKRFFRPQLNDLH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N + YIPDR  
Sbjct: 61  FLMNDMDVAVERLNLAMGRKERILVYGDYDVDGTTAVALVFKFLQQFYSNIDYYIPDRYN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++   + G +L+I +DCG  + + + YA  +GID I+ DHH       PA 
Sbjct: 121 EGYGVSKKGVDYAYSTGVKLVIVLDCGIKAVEEISYAKEKGIDFIICDHHVPDEVLPPAA 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++N  R D      HL   GV F  +    +     N       L  LLDLVA++   D
Sbjct: 181 AILNAKRPDSTYPYEHLSGCGVGFKFMQAFAQ-----NNGIEFHQLTPLLDLVAVSIASD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VP++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI
Sbjct: 236 IVPIMGENRILAYHGLRQLNANPSIGLKAIIDVCGLAEKEITMSDIVFKIGPRINASGRI 295

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LLI  D       + +++  N+ R+ ++  M E+A  K++    D+ +   I
Sbjct: 296 QNGKEAVDLLIEKDFASALKKSNRINSYNETRKDLDKNMTEEA-NKIVDNLSDLSERRSI 354

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + WH G++G++A+RL E + RP+  ++  E     GS RS+ GFD+ K +      
Sbjct: 355 VIFNEDWHKGVIGIVASRLTEIYYRPAVVLTRTE-NLATGSARSVSGFDVYKAIEHC--R 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL+++  N       F+++  N +    T    +ID  L+   +   
Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFTRRFEEYVTNHILPEQTNATIQIDAQLDFRDITPK 471

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
               L+   P+G  N  PVFA  N     + +VV     H+++     + +  +  IAF 
Sbjct: 472 FFFDLKKFNPFGPENHKPVFATLNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +       +  ++   +  N  +     QL++ D  P 
Sbjct: 532 QS----SQVRYIKTKQSFNICYTIEENTHK-RGEIQLQIEDIKPS 571


>gi|331674377|ref|ZP_08375137.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA280]
 gi|331068471|gb|EGI39866.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           TA280]
          Length = 577

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHVGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|242240701|ref|YP_002988882.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii
           Ech703]
 gi|242132758|gb|ACS87060.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii
           Ech703]
          Length = 580

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 186/568 (32%), Positives = 277/568 (48%), Gaps = 23/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V        L+ S+R L+ D   LT    A   + QA+    ++++ 
Sbjct: 22  LPPLLRRLYALRGVKDPQE---LDRSLRGLL-DYRQLTGIGTAVDLLCQALAERLRVVVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     +     +P+R  DGYG +P ++ +   +GA LI+TVD
Sbjct: 78  GDFDADGATSTALTVLALRAMGCDQVQYLVPNRFEDGYGLSPEVVVQAAAKGADLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +  A  +GI V+V DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVDDAHQRGIRVLVTDHHLPGETLPSADAMINPNLADCAFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ ++  LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMMALFVRLRDSGWFAQRNLAVPNLTELLDLVALGTVADVVPLDANNRILVAQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G++AL+E  N   + + A +LG+ +GP +NA GR+ + ++G  LL+ DD  +  M
Sbjct: 258 GKCRAGIRALLEVSNRDAAQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDDIVQARM 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ RR +E  M  +A       +       S + +    WH G+VG+LA+RL
Sbjct: 318 LASELDALNQTRREIEQGMQVEALQLCEQLERSQTTLPSGVAMYHPEWHQGVVGILASRL 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGVLKGSGRSIPGLHLRDALERLDTLHPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F R    F +     + A     V   DG L A  + +   +ML  AGP+G   P 
Sbjct: 438 EAHQFDRFRARFGELVSEWLDASHLEGVIWSDGELAAPELTLGTAEMLREAGPWGQSFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLMQSRGKR 564
           P F     ++   R++   HL+  FE          L  IAF V      +       K 
Sbjct: 498 PAFDGR-FRILKPRLLKERHLKALFEPIGGTGQVPLLDGIAFNVDTATWPD----PSIKE 552

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +   L +N +RG +  QL +    P+
Sbjct: 553 VEMVYRLEINEYRGKRSVQLLIEHLWPL 580


>gi|253687048|ref|YP_003016238.1| single-stranded-DNA-specific exonuclease RecJ [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753626|gb|ACT11702.1| single-stranded-DNA-specific exonuclease RecJ [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 584

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 180/573 (31%), Positives = 279/573 (48%), Gaps = 29/573 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V    A   L  S+  L+ +  +L+  D A   + + +     I+I 
Sbjct: 20  VPPLLRRLYAQRGV---KAAQELERSLSGLL-NYRLLSGIDNAVDLLQKTLAEKRCIVIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     VN    +P+R  DGYG +P ++ +    GA++I+TVD
Sbjct: 76  GDFDADGATSTALTVLALRSMGCVNVKYLVPNRFEDGYGLSPEVVAQAAALGAEVIVTVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A++NPN  D       L   GV F 
Sbjct: 136 NGISSHAGVEDAHRRGITVLVTDHHLPGEILPDADAMINPNLPDCQFPSKALAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           +++ ++  LR  +               +L  LLDLVAL TV DVVPL   NR  V +GL
Sbjct: 196 LMMALFVRLRDSDWFTQPLFTQQGLVKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 255

Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R     PG++AL+E  N   S + + +LG+ +GP +NA GR+ +  +G  LL+SDD 
Sbjct: 256 NRIRAGECRPGIRALLEVANRDASQLVSSDLGFALGPRLNAAGRLHDMKIGVELLLSDDI 315

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385
            +  +LA +L+ +NQ+RR +E  M  +A     + +    +    + +    WH G+VG+
Sbjct: 316 VQARILANELNDMNQDRRDIEQGMQAEALHLCESLERTRTELPYGLAMYHPEWHQGVVGI 375

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443
           LA+R+KE+F RP  A +   DG   GSGRSI G  +   +        G++ K GGHAMA
Sbjct: 376 LASRIKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLYPGMMEKFGGHAMA 435

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502
           AGL++    F      F +     +       V   DG L    ++ ++  +ML  AGP+
Sbjct: 436 AGLSLHEDRFEDFRQRFGELVGEWLDPSQLEGVVWSDGELVLPELDLLSTAEMLRYAGPW 495

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558
           G   P P F     ++   R++   HL+  FE   +      L  IAF V  T   +   
Sbjct: 496 GQSFPEPTFDGR-FRILQPRLLKERHLKAMFEPIGATGKVPLLDGIAFNVDTTIWPD--- 551

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               K + +   L +N +RG +  QL +    P
Sbjct: 552 -PSIKEVEIVYRLDINEFRGKRSVQLLIQHLWP 583


>gi|320195011|gb|EFW69640.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           WV_060327]
          Length = 577

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +  ++        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDVLERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|24114146|ref|NP_708656.1| ssDNA exonuclease RecJ [Shigella flexneri 2a str. 301]
 gi|30064204|ref|NP_838375.1| ssDNA exonuclease RecJ [Shigella flexneri 2a str. 2457T]
 gi|24053286|gb|AAN44363.1| ssDNA exonuclease [Shigella flexneri 2a str. 301]
 gi|30042461|gb|AAP18185.1| ssDNA exonuclease [Shigella flexneri 2a str. 2457T]
 gi|281602225|gb|ADA75209.1| SsDNA exonuclease [Shigella flexneri 2002017]
 gi|313647932|gb|EFS12378.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri 2a
           str. 2457T]
 gi|332752929|gb|EGJ83313.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           4343-70]
 gi|332753728|gb|EGJ84107.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           K-671]
 gi|332754560|gb|EGJ84926.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           2747-71]
 gi|332765823|gb|EGJ96036.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           2930-71]
 gi|332999675|gb|EGK19260.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           VA-6]
 gi|332999961|gb|EGK19544.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           K-218]
 gi|333000721|gb|EGK20296.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           K-272]
 gi|333015013|gb|EGK34356.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           K-304]
 gi|333015223|gb|EGK34565.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri
           K-227]
          Length = 577

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|145637031|ref|ZP_01792694.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittHH]
 gi|145269685|gb|EDK09625.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittHH]
          Length = 575

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   +         +   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHLFNQTVADWFDEEHLQSIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574


>gi|90962066|ref|YP_535982.1| single-stranded-DNA-specific exonuclease [Lactobacillus salivarius
           UCC118]
 gi|90821260|gb|ABD99899.1| Single-stranded-DNA-specific exonuclease [Lactobacillus salivarius
           UCC118]
          Length = 777

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 194/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W  +   E  +    + ++   P IV ++L+ R     +   +FL+P  R L  DP  
Sbjct: 6   KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +    RI QAI N EKI+I+GDYDVDG  S ALM   L         YIPDR  DG
Sbjct: 64  MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRFKDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN  + ++ I+EG  LI+TVD G   ++A+ YA   G+DV+V DHH++      AYA+
Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +     G L   GV F V   +   L QD           +LDLVAL TV D+V
Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V  GL + ++   PGL++L +   I    IT E +G+ + P +NA GR+  
Sbjct: 233 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRMEN 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG  LL + D +  E LA   + LN  R+   + ++E+A A++  +    +   V VV
Sbjct: 293 GSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKS---ENHLVNVV 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432
            G+ WH G+VG++A+RL +  G+PS  +S +E  G   GSGRSIE F +    +      
Sbjct: 350 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQM--FDALDSHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH MA GL+++R     L     +          T PV K+   +N   VN+ L
Sbjct: 408 ILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLGL 466

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              LE+  P+G  NP PVF F ++++ +++ +     HL++  +S +S+ + A+ F +  
Sbjct: 467 EAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + E         + + G L  N W+     Q+ + D 
Sbjct: 526 KKISEIERNKN--SVRLIGTLGKNVWQSRVNLQIMIEDI 562


>gi|293412251|ref|ZP_06654974.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B354]
 gi|291469022|gb|EFF11513.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           B354]
          Length = 577

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSA---HELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|210623792|ref|ZP_03294052.1| hypothetical protein CLOHIR_02003 [Clostridium hiranonis DSM 13275]
 gi|210153374|gb|EEA84380.1| hypothetical protein CLOHIR_02003 [Clostridium hiranonis DSM 13275]
          Length = 822

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 179/579 (30%), Positives = 287/579 (49%), Gaps = 19/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W       G       T+K  +   ++++L NRN+ S +  K F NPS+  L  DP +
Sbjct: 2   KKWTL--IHRGKPDVTDETEKFKLSPEISQILENRNINSEEEIKLFTNPSLDYLR-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KAA RI +AI  +E++ I+GDYDVDG +S ++++ +    + +   YIP+R+ +G
Sbjct: 59  MKDMGKAAERIKKAIELNERVWIYGDYDVDGVSSTSVLLTYFRSINFDVKYYIPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E   +EG  LII+VDCG TS D ++YA   GI++I+ DHH+ +SE   AYA+
Sbjct: 119 YGINKEAIEYINSEGCDLIISVDCGITSVDEVEYANELGIEMIITDHHECQSEIPNAYAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP + D       LC  G+ F ++  +               +   +++  LAT+CD+V
Sbjct: 179 VNPKQDDCNYPFDMLCGCGIAFKLVQAL------TPPEVFKTTVYDYIEIATLATICDIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL+  NR  V  GL   +   N GL  LI    +    I + ++G+ IGP INA GR+G 
Sbjct: 233 PLVDENRIIVKNGLKAMKNGHNLGLSELINVCGVDKEKIGSSHIGFTIGPRINAAGRLGF 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           S+LG  L  + D      +A+ LD  N +R+++E  +  +AE  +       +   VIV+
Sbjct: 293 SDLGVELFTATDKDTAHEIALALDEKNNDRQMIEMKIHHEAETII-KNDPSYEDDKVIVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  G++G++A++L EK+ +P+  +   EDG+  GS RSI+GF I   ++      I
Sbjct: 352 AHEGWQHGVIGIVASKLTEKYYKPTILM-CIEDGEATGSARSIKGFSIFDALTEC--ADI 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGH  AAGL++       L     + A   +         K++  L+  + N  LI
Sbjct: 409 LTKFGGHEQAAGLSISADKVPELRRRINESADINLTEEDMIEEIKVEYELDEKSANFDLI 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           + L    P+G  NP P F   +  L+ +R +      +  E +     + + F       
Sbjct: 469 EELRKLEPFGMSNPTPKFILRDCILRDMRFMGQNKQHIKLEIEKESVFECVGFNAAHLID 528

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           G       G R+ V   L  N + G ++ Q  V D    
Sbjct: 529 G----LKNGDRIDVLFQLDENTFMGKRKLQFLVKDLRLA 563


>gi|296283974|ref|ZP_06861972.1| single-stranded-DNA-specific exonuclease RecJ [Citromicrobium
           bathyomarinum JL354]
          Length = 600

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 239/594 (40%), Positives = 336/594 (56%), Gaps = 15/594 (2%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67
           GVE S+ G  W    G    +   A        DI+ ++L+ R V+ D  +    P +  
Sbjct: 15  GVERSLGGRSWRWRGGPNQYDGPAA---SLG-DDILTQLLLARGVARDDLERQREPKLAA 70

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
            +PDP I  D + AA R+ QAI   EK+ I+GDYDVDGA S AL++R        A+ YI
Sbjct: 71  FLPDPAIFQDMEAAAERLAQAILTREKVTIYGDYDVDGATSAALLIRLFGMLGHEADYYI 130

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDR+++GYGP+   + K   +G+ L++TVDCG+ +++AL  A + G++VIVIDHH+   E
Sbjct: 131 PDRLLEGYGPSGEALVKLGEQGSSLVVTVDCGAMAHEALAAARDAGVEVIVIDHHKCSHE 190

Query: 188 EIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242
             PA ALVNPNRLD+       GHL A GV FLV + + R LR           DL  LL
Sbjct: 191 RPPALALVNPNRLDEADEAAAHGHLAAVGVAFLVAIALVRKLRTHGYFKDRKEPDLRGLL 250

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DLVAL TV DV  L GLNRA+V +GL V  ++ N G+ ALI+   ++    + +LG+ +G
Sbjct: 251 DLVALGTVADVAALHGLNRAFVSQGLKVMAKRANIGMSALIDASRLTRAPISSDLGFALG 310

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INAGGR+GES LG RLL ++D +E   +A +L  LN+ RR +E+ + E  EA++  Q 
Sbjct: 311 PRINAGGRVGESTLGVRLLTTEDPEEAAQIAAQLSQLNEERRAIEAEVQEAGEAQLAGQG 370

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDI 421
                 +V +V GD WHPG++G++A R+KEK GRPS  I+ +   G G GSGRSI G D+
Sbjct: 371 ----NRAVRIVHGDGWHPGVIGIVAGRIKEKTGRPSLVIARDSQAGLGKGSGRSIPGVDL 426

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  +  A EEG+L  GGGHAMAAGLTV         D+ +      V A         D 
Sbjct: 427 GAAIMAAREEGLLEAGGGHAMAAGLTVHEDKIEAFTDWLESRLERQVAAASAEASLGFDL 486

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L    + + L++ LE  GPYG G P P  A     L  +  V   H+++   S+D  ++
Sbjct: 487 SLGPRGLTVELVETLERGGPYGMGWPGPRIAIGPVHLVKVDRVGSDHVRLLAGSRDGGSI 546

Query: 542 QAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           +AIAFR   +  G+ L+    G RM + G   V+ W  + R +L + DA+ +E 
Sbjct: 547 KAIAFRAADSDWGQALLAAHPGTRMWLAGRAKVDTWANTPRAELHLEDAAFIEP 600


>gi|161936328|ref|YP_128793.2| ssDNA exonuclease RecJ [Photobacterium profundum SS9]
          Length = 574

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/561 (31%), Positives = 277/561 (49%), Gaps = 20/561 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           P ++ R+  +R ++ +     L    + L+     L     A + +V A+  + +I+I G
Sbjct: 20  PPLLQRIYASRGIASE---LELERGAKGLLSY-EQLHGIKPAVQLLVTALAENRRIIIVG 75

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      N +  IP+R+ DGYG +P ++++    GA++I+TVD 
Sbjct: 76  DFDADGATSSALSVLALRMLGCSNVDYLIPNRVEDGYGLSPEVVDQAEARGAEVIMTVDN 135

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S   +  A  +G+ V+V DHH    E   A A+VNPN          LC  GV F +
Sbjct: 136 GVSSIAGVAAAKAKGMQVLVTDHHLQGKELPIADAIVNPNLDVCTFPSKALCGVGVAFYI 195

Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
           ++ +   LR  N          +L  LLDLVAL TV DVV L G NR  V +GL   R  
Sbjct: 196 MLALRAELRNINWFEQQGIPVPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAG 255

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG++ALIE  N     +   +LG+ +GP INA GR+ + + G  LL+ +  Q    +
Sbjct: 256 KCRPGIQALIEVANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRM 315

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391
           A +LD LNQ R+ +E  M E+A A       + Q       +    WH G++G+LA+R+K
Sbjct: 316 ASELDGLNQTRKEIEHGMKEEALAICERISFNQQDMPYGLALFQRDWHQGVIGILASRIK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           + + RP  A +   +G+  GS RSI G  +  ++        G+++K GGHAMAAGLT+ 
Sbjct: 376 DLYHRPVIAFADAGEGEIKGSCRSIPGLHMRDVLDLIDTRNPGMILKFGGHAMAAGLTIP 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F     + +       VF  DG L A+ +NI   ++L + GP+G   P P
Sbjct: 436 EDQLTGFSKAFDDIVRSQLDEDALKGVFLTDGELAANELNIETAEVLRNGGPWGQQFPEP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     +L   ++V   HL+M  E       + AIAF V      +    +  +++ + 
Sbjct: 496 SFDGR-FRLLHQKLVGSKHLKMMVEPINGGSVIDAIAFNVDLKSWPD----ASVQQVDLV 550

Query: 569 GHLCVNYWRGSKRCQLRVLDA 589
             L VN +RG++  QL +   
Sbjct: 551 YRLDVNEFRGNRSVQLMIEHL 571


>gi|46912196|emb|CAG18991.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium profundum SS9]
          Length = 608

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/561 (31%), Positives = 277/561 (49%), Gaps = 20/561 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           P ++ R+  +R ++ +     L    + L+     L     A + +V A+  + +I+I G
Sbjct: 54  PPLLQRIYASRGIASE---LELERGAKGLLSY-EQLHGIKPAVQLLVTALAENRRIIIVG 109

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      N +  IP+R+ DGYG +P ++++    GA++I+TVD 
Sbjct: 110 DFDADGATSSALSVLALRMLGCSNVDYLIPNRVEDGYGLSPEVVDQAEARGAEVIMTVDN 169

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S   +  A  +G+ V+V DHH    E   A A+VNPN          LC  GV F +
Sbjct: 170 GVSSIAGVAAAKAKGMQVLVTDHHLQGKELPIADAIVNPNLDVCTFPSKALCGVGVAFYI 229

Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
           ++ +   LR  N          +L  LLDLVAL TV DVV L G NR  V +GL   R  
Sbjct: 230 MLALRAELRNINWFEQQGIPVPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAG 289

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG++ALIE  N     +   +LG+ +GP INA GR+ + + G  LL+ +  Q    +
Sbjct: 290 KCRPGIQALIEVANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRM 349

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391
           A +LD LNQ R+ +E  M E+A A       + Q       +    WH G++G+LA+R+K
Sbjct: 350 ASELDGLNQTRKEIEHGMKEEALAICERISFNQQDMPYGLALFQRDWHQGVIGILASRIK 409

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           + + RP  A +   +G+  GS RSI G  +  ++        G+++K GGHAMAAGLT+ 
Sbjct: 410 DLYHRPVIAFADAGEGEIKGSCRSIPGLHMRDVLDLIDTRNPGMILKFGGHAMAAGLTIP 469

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F     + +       VF  DG L A+ +NI   ++L + GP+G   P P
Sbjct: 470 EDQLTGFSKAFDDIVRSQLDEDALKGVFLTDGELAANELNIETAEVLRNGGPWGQQFPEP 529

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     +L   ++V   HL+M  E       + AIAF V      +    +  +++ + 
Sbjct: 530 SFDGR-FRLLHQKLVGSKHLKMMVEPINGGSVIDAIAFNVDLKSWPD----ASVQQVDLV 584

Query: 569 GHLCVNYWRGSKRCQLRVLDA 589
             L VN +RG++  QL +   
Sbjct: 585 YRLDVNEFRGNRSVQLMIEHL 605


>gi|284922840|emb|CBG35929.1| single-stranded DNA-specific exonuclease [Escherichia coli 042]
          Length = 577

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHVGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|26249307|ref|NP_755347.1| ssDNA exonuclease RecJ [Escherichia coli CFT073]
 gi|215488192|ref|YP_002330623.1| ssDNA exonuclease RecJ [Escherichia coli O127:H6 str. E2348/69]
 gi|218691017|ref|YP_002399229.1| ssDNA exonuclease RecJ [Escherichia coli ED1a]
 gi|227888441|ref|ZP_04006246.1| ssDNA exonuclease RecJ [Escherichia coli 83972]
 gi|300980314|ref|ZP_07174968.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           45-1]
 gi|301049324|ref|ZP_07196294.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           185-1]
 gi|312964848|ref|ZP_07779088.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           2362-75]
 gi|26109715|gb|AAN81920.1|AE016766_8 Single-stranded-DNA-specific exonuclease recJ [Escherichia coli
           CFT073]
 gi|215266264|emb|CAS10693.1| ssDNA exonuclease, 5-3'-specific [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218428581|emb|CAR09508.2| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli ED1a]
 gi|227834710|gb|EEJ45176.1| ssDNA exonuclease RecJ [Escherichia coli 83972]
 gi|300298923|gb|EFJ55308.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           185-1]
 gi|300409322|gb|EFJ92860.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           45-1]
 gi|307554868|gb|ADN47643.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli ABU
           83972]
 gi|312290404|gb|EFR18284.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           2362-75]
 gi|315293875|gb|EFU53227.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           153-1]
 gi|324005544|gb|EGB74763.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           57-2]
          Length = 577

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+A+ + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|306812206|ref|ZP_07446404.1| ssDNA exonuclease RecJ [Escherichia coli NC101]
 gi|222034587|emb|CAP77329.1| Single-stranded-DNA-specific exonuclease recJ [Escherichia coli
           LF82]
 gi|305854244|gb|EFM54682.1| ssDNA exonuclease RecJ [Escherichia coli NC101]
 gi|312947425|gb|ADR28252.1| ssDNA exonuclease RecJ [Escherichia coli O83:H1 str. NRG 857C]
          Length = 577

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+A+ + + +  +L  AGP+G   P 
Sbjct: 438 EEEKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|187732306|ref|YP_001881661.1| ssDNA exonuclease RecJ [Shigella boydii CDC 3083-94]
 gi|187429298|gb|ACD08572.1| single-stranded-DNA-specific exonuclease RecJ [Shigella boydii CDC
           3083-94]
          Length = 577

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRPLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|170683389|ref|YP_001745045.1| ssDNA exonuclease RecJ [Escherichia coli SMS-3-5]
 gi|170521107|gb|ACB19285.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           SMS-3-5]
          Length = 577

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSA---HELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDMLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|292487144|ref|YP_003530014.1| single-stranded DNA-specific exonuclease [Erwinia amylovora
           CFBP1430]
 gi|292900475|ref|YP_003539844.1| single-stranded-DNA-specific exonuclease [Erwinia amylovora ATCC
           49946]
 gi|291200323|emb|CBJ47451.1| single-stranded-DNA-specific exonuclease [Erwinia amylovora ATCC
           49946]
 gi|291552561|emb|CBA19606.1| Single-stranded DNA-specific exonuclease [Erwinia amylovora
           CFBP1430]
          Length = 572

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 193/560 (34%), Positives = 279/560 (49%), Gaps = 17/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  +R VS       L    + L P    L+  D+A   + +A+ ++  IMI
Sbjct: 21  DLHTLLRRLYAHRGVSRA---CELERGAKNLHP-FQSLSGIDQAVTILQKALLDNLCIMI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALTVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAVRGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A  +GI VIV DHH        A A+VNPN  D       L   GV F
Sbjct: 137 DNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275
            +++ +   LR D    L  +L  LLDLVAL TV DVVPL   NR  V +GL   R  + 
Sbjct: 197 YLMLALRARLRDDGVNTL-PNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++AL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+S+D  +  MLA 
Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLAQARMLAS 315

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A           +   + I +    WH G+VG+LA+RLKE+
Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESASEALPLGIAMYHPEWHQGVVGILASRLKER 375

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A +   DG   GSGRSI G  +  ++        G++VK GGHAMAAGL+++  
Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTLHPGLIVKFGGHAMAAGLSLQEA 435

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F     + + A     V   DG L A  + +   ++L  AGP+G   P P F
Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLRDAGPWGQAFPEPTF 495

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                KL   R+V   HL++  E       L  IAF V      +       K++ +   
Sbjct: 496 DGK-FKLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTALWPD----PAVKQVELAYK 550

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L VN +RG++  QL +    
Sbjct: 551 LDVNEYRGNRNVQLIIDHLW 570


>gi|254419621|ref|ZP_05033345.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas sp.
           BAL3]
 gi|196185798|gb|EDX80774.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas sp.
           BAL3]
          Length = 603

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 223/592 (37%), Positives = 328/592 (55%), Gaps = 7/592 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           D AFLGV  S+SG  W     +    RA    Q   + + +AR L +R V  D   DFL 
Sbjct: 10  DNAFLGVTQSLSGRAWRQRPAEAATIRAH--MQGLGLEEPLARALASRGVRADQGADFLT 67

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R L PDP    D D AA  ++ A     ++ IF DYDVDGA+S AL++R+      +
Sbjct: 68  PTLRALFPDPSSFMDMDAAAEALLDAFQAKSQVHIFADYDVDGASSAALLVRWFRAMGAD 127

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             +Y+PDR+ +GYGP+    +     GA L++TVDCG+ + +AL +A    ++V+VIDHH
Sbjct: 128 LPIYVPDRLTEGYGPSAKAFDTLKAAGADLVVTVDCGAAANEALAHAAAIDLNVVVIDHH 187

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240
            ++SE   A A+VNPNR    SGQG+L AAGVVF++L  + R  R+          D+  
Sbjct: 188 LMRSEPPRALAVVNPNRPGCNSGQGNLAAAGVVFVLLAALNREARRRGLFADRPEPDIRQ 247

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGY 299
            LDL AL  +CDV  L G NRA    GL V     NPGL+AL+             + G+
Sbjct: 248 WLDLAALGAICDVTALTGFNRALTGLGLKVMSDWKNPGLRALLAAAGAEQGPAKSNHAGF 307

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP INAGGRIG S+LG+RLL +DD  E + LA++LD LN +RR +E A+ E A  +V 
Sbjct: 308 ILGPRINAGGRIGRSDLGARLLSTDDPAEAQALALELDALNLSRREVERAVTEAAVRRVE 367

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEG 418
                  + +++VV G+ WHPG+VG++A RL+E++ +P   I  +   G G GSGRS  G
Sbjct: 368 ATGAHADETALVVVAGEDWHPGVVGIVAGRLRERWRKPVIVIGLDPVTGLGKGSGRSQPG 427

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            ++G+ +  A E G+L+ GGGHAMAAGLT++      L DF            +     +
Sbjct: 428 MNLGRAIQAAWEAGVLLAGGGHAMAAGLTMDGARLAELTDFLNDRLAGERIEAVAMDALE 487

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           ID +++  A   AL +  E   P+G  NP PVFA    + +    +N  H++      D 
Sbjct: 488 IDALIDPGAATRALFESFEQLAPFGPSNPEPVFALNGVQAREPVQMNGGHVRCRLVGPDG 547

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +++A+A+R    P G+ L+  +G  ++V G L  + W G +  Q  + D +
Sbjct: 548 ASVRAVAWRCADLPTGQALLSGQGG-LNVVGRLKADDWNGRRGVQFEIEDVA 598


>gi|312962842|ref|ZP_07777329.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens
           WH6]
 gi|311282869|gb|EFQ61463.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens
           WH6]
          Length = 569

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/561 (31%), Positives = 278/561 (49%), Gaps = 18/561 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V  +     L+ S+  L+P    L   D A   +V A+   ++I+I 
Sbjct: 18  LPPLLTRLYAARGVQSE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALEQRQRILIV 73

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA +  +    L      + +  +P+R   GYG  P ++   +    QL+ITVD
Sbjct: 74  GDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVD 133

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F 
Sbjct: 134 NGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFY 193

Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
           VL+ +   LR           ++  LLDLVAL +V DVVPL   NR  V +GL   R  +
Sbjct: 194 VLMALRARLRDLGWYANTPQPNIGDLLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253

Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
             PG+KA++E      + IT+ +LG+++GP +NA GR+ + +LG   L++ D+     +A
Sbjct: 254 ARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDAAAAREMA 313

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +LD +NQ+R+ +E  M  +A A++     D      + +    WH G++G+LA+R+KE+
Sbjct: 314 AQLDGMNQDRKSIEQGMQREALAQLKDLPVD-SMPYGLCLFDPEWHQGVIGILASRMKER 372

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
           + RP+ A +   DG   GSGRS++GF I   ++        ++ K GGHAMAAGLT+   
Sbjct: 373 YFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLIAKYGGHAMAAGLTLPEA 432

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           NF    + F       +     T     DG L     ++ L   L  AGP+G   P P+F
Sbjct: 433 NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                +L   RVV   HL++  +S+  S  L  IAF V      E       + + +   
Sbjct: 493 HG-VFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDR----EVWPNPTVRWVELAYK 547

Query: 571 LCVNYWRGSKRCQLRVLDASP 591
           L VN +RG++  QL +    P
Sbjct: 548 LDVNEFRGNETVQLMIAHIEP 568


>gi|257881033|ref|ZP_05660686.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,502]
 gi|293560337|ref|ZP_06676833.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1162]
 gi|294620545|ref|ZP_06699846.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           U0317]
 gi|314939161|ref|ZP_07846418.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133a04]
 gi|314943930|ref|ZP_07850647.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133C]
 gi|314948040|ref|ZP_07851443.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0082]
 gi|314953285|ref|ZP_07856216.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133A]
 gi|314993370|ref|ZP_07858737.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133B]
 gi|314994956|ref|ZP_07860077.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133a01]
 gi|257816691|gb|EEV44019.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,502]
 gi|291599782|gb|EFF30786.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           U0317]
 gi|291605698|gb|EFF35136.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1162]
 gi|313590813|gb|EFR69658.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133a01]
 gi|313592154|gb|EFR70999.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133B]
 gi|313594667|gb|EFR73512.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133A]
 gi|313597434|gb|EFR76279.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133C]
 gi|313641541|gb|EFS06121.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0133a04]
 gi|313645520|gb|EFS10100.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TX0082]
          Length = 765

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/581 (30%), Positives = 276/581 (47%), Gaps = 31/581 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LIHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I EG QLIITVD G    DA+ YA   G+DVI+ DHH++      AYA
Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   +      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + ++A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRSIE  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L+  P  +ID VL  + V +  
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           ID L+   P+G  NP P F F   + ++I+ +     HL+       S+ L A+AF  +G
Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T   E L      ++ V G L +N W G K+ QL V D S 
Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558


>gi|192361064|ref|YP_001982094.1| single-stranded-DNA-specific exonuclease RecJ [Cellvibrio japonicus
           Ueda107]
 gi|190687229|gb|ACE84907.1| single-stranded-DNA-specific exonuclease RecJ [Cellvibrio japonicus
           Ueda107]
          Length = 597

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/566 (29%), Positives = 276/566 (48%), Gaps = 25/566 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRL-LMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +  ++ R+   R +  +    +    +   L P+       D+    +V A+    ++++
Sbjct: 38  LHPLLQRIYSARGIQQEAELQY---QLTHMLKPN---FKGLDETVGLLVDAVVAQARVLV 91

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L    +   +  +P+R   GYG  P ++     +   +I+TV
Sbjct: 92  VGDFDADGATSSALAVLALRAMGLKQVDFLVPNRFEYGYGLTPEIVAVAAAQQPDVILTV 151

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++ A + GI VI+ DHH   +    A A+VNPN+        +L   GV+F
Sbjct: 152 DNGISSIEGVEAARDLGIAVIITDHHLPGAHLPDADAIVNPNQPGCPFPSKNLAGVGVIF 211

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V+  +   LR             ++ S LDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 212 YVMNALRGALRDMGWFAESGIAEPNMASFLDLVALGTVADVVPLDHNNRILVSQGLARMR 271

Query: 273 RQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG+ AL+E        + A +LG+ +GP +NA GR+ + +LG + L+ D      
Sbjct: 272 AGAARPGIMALLEVAGRQPQRLVASDLGFAVGPRLNAAGRMDDMSLGIQCLLCDSLPLAR 331

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI--VVEGDRWHPGIVGLLAA 388
            +A +LD LN++R+ +E+ M ++A   +    +  + A      +  + WH G++G+LA+
Sbjct: 332 EMAAQLDELNRDRKAIETGMQQEAMGMLQKVLNADENALPWGLCLFDETWHQGVIGILAS 391

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGL 446
           R+K+++ RP+   +   DG   GS RSI G  I   +    A    +L K GGHAMAAG+
Sbjct: 392 RIKDRYHRPTIVFADAGDGLIKGSARSIPGLHIRDALDAVAARRPDLLQKFGGHAMAAGM 451

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           +++R +F      F +  H  + A     V   DG L+AS  ++ L   L +AGP+G   
Sbjct: 452 SLQREHFEAFAKAFDEEVHRQLRAEDLQAVVVTDGELSASDFSLPLAAQLRNAGPWGQHF 511

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMT--FESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
           P PVF      +   ++V   HL+MT   +S+  + + AIAF +            + +R
Sbjct: 512 PEPVFDGE-FYVLQQKLVGDKHLKMTLALDSRGQQLVDAIAFNIDPGLWP----NQQVQR 566

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + +   L +N +RG+   QL V    
Sbjct: 567 VRLAYKLDINEFRGNTNLQLMVDYLE 592


>gi|320182205|gb|EFW57108.1| Single-stranded-DNA-specific exonuclease RecJ [Shigella boydii ATCC
           9905]
          Length = 577

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KESFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|149021571|ref|ZP_01835626.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP23-BS72]
 gi|147930267|gb|EDK81252.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP23-BS72]
          Length = 740

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFITFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|157162352|ref|YP_001459670.1| ssDNA exonuclease RecJ [Escherichia coli HS]
 gi|157068032|gb|ABV07287.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli HS]
          Length = 577

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCCPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|301027810|ref|ZP_07191115.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           196-1]
 gi|299879072|gb|EFI87283.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           196-1]
          Length = 577

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSAALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|300921224|ref|ZP_07137597.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           115-1]
 gi|300411830|gb|EFJ95140.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           115-1]
          Length = 577

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 175/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++ PN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIITPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|312883962|ref|ZP_07743679.1| ssDNA exonuclease RecJ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368420|gb|EFP95955.1| ssDNA exonuclease RecJ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 578

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/568 (30%), Positives = 277/568 (48%), Gaps = 24/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++  ++ R+  +R V  +     LN ++R L     +    D A + +  AI   ++I++
Sbjct: 18  SLHPLLRRIYSSRGVLSEQQ---LNTTVRALHSYQELF-GIDTAVKMLFAAIETKKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     +  +  +P+R  DGYG +P ++E+ +  GAQ+I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSDNVDYLVPNRFEDGYGLSPEVVEQAMELGAQMIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + ++YA   GI+VIV DHH    E   A A+VNPN          L   GV F
Sbjct: 134 DNGVSSIEGVKYAKQCGIEVIVTDHHLPGHELPMADAMVNPNLQQCQFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R              L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVHMRNVGWFSRQSMSEPKLMELVDLVALGTVADVVPLDKNNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKARPGIQALIEVSKRDAKRLIASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ+R+ +E  M ++A A     Q  D      +V+    WH G++G+LA+R
Sbjct: 314 RMASELDGLNQSRKEIEEGMKQEAMAFCERLQFGDKDMPYGLVLFQRDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEKF RP  A +    G   GS RSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 374 IKEKFHRPVIAFADGGGGTIKGSCRSIPGLHMRDALDRIDKQNPGLILKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F      F +     +       V   DG L     ++   + L S GP+G   P
Sbjct: 434 IAEKDFECFSSLFDQAVKQDLDEAALKGVILSDGELIPEDFSLHTAEALRSGGPWGQAFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFE-----SQDSETLQAIAFRVYGTPLGEFLMQSRG 562
            P+F     K+   ++V   HL++  E        +  L  IAF +      +    +  
Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLFRGQPTNLMLDGIAFNIDLRRWPD----AST 548

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           K + +   L +N +RG++  QL +    
Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLLIDHIE 576


>gi|290476400|ref|YP_003469305.1| 5'->3'-specific Mg-dependent ssDNA exonuclease [Xenorhabdus
           bovienii SS-2004]
 gi|289175738|emb|CBJ82541.1| ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent [Xenorhabdus
           bovienii SS-2004]
          Length = 577

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 272/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +I  ++ R+   R +        L    + L+ +   L   ++A   ++ A+Y+  +I+I
Sbjct: 21  SIHPLLRRLYAMRGIRQADE---LERGAKGLL-NYQSLNGIEQAVSLLITALYDHSRIVI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +R L      N +  +P+R  DGYG +  ++ + + +GA LIITV
Sbjct: 77  VGDFDTDGATSTALCIRALRAMGYRNLDYLVPNRFEDGYGLSVQIVNEVVKKGADLIITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S++ +  A    I V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHEGVAAAHQHSIKVLVTDHHLPGETLPAADAIINPNLHDCTFPSKALAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR+            +L  LLDLVAL  V DVVPL   NR +V +GL   R
Sbjct: 197 YLMSALRAELRRIAWFEQQGIPLPNLAELLDLVALGIVADVVPLDTNNRIFVYQGLNRIR 256

Query: 273 RQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                      L      S+ + A +LG+ +GP +NA GR+ + ++G  LL++DD  +  
Sbjct: 257 AGRCCVGIRALLEISKRESTKLAASDLGFSLGPRLNAAGRLDDMSVGVALLLTDDMVQAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A       +    Q    +V+    WH G+VG+LA+R
Sbjct: 317 QIACELDGLNQTRREIEQGMQQEALQICDQFERTCTQLPYGLVIYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRS+ G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSVNGLHMRDALERLDTRHPGLILKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E+  F      F     + +       V   DG L    +++ + ++L   GP+G    
Sbjct: 437 IEQDKFDLFQRHFSALMADWLDISQLGGVVWSDGELALGELSLEIAEILREGGPWGQAFA 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     KL   R+V   HL++  E       L  IAF +      +    +  K + 
Sbjct: 497 EPIFDGK-FKLLQQRIVGEKHLKVMLEPLNGGPMLDGIAFNIDTHRWPD----NSVKTVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 552 LAYKLDINEFRGNRDVQLLIQHIWP 576


>gi|228476930|ref|ZP_04061575.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           salivarius SK126]
 gi|228251504|gb|EEK10649.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           salivarius SK126]
          Length = 741

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/605 (28%), Positives = 287/605 (47%), Gaps = 34/605 (5%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KD 59
           M  + +  +  S   + W     +        + ++H + +  A++   R V+ + A +D
Sbjct: 1   MTGRKYKNMITST--YDWKINTKEPD-AGFFKLAKEHGLAETAAKIAYERGVTTEEALED 57

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FL   +  L  DP +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L   
Sbjct: 58  FLKSDLSHLH-DPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEML 116

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIV 178
              A +Y+P+R  DGYGPN S+ + FI +    LI+TVD G    +A+ YA  QG+DVIV
Sbjct: 117 GAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVVGNEAIAYAQEQGVDVIV 176

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238
            DHH + ++   A+A+V+P   D      +L   GV F +   +   +            
Sbjct: 177 TDHHSMSAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP----------- 225

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENL 297
             +LDLVA+ T+ D+V L   NR  V  GL + +     GL+ L+   ++    I+ E +
Sbjct: 226 TEMLDLVAIGTIADMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETV 285

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+ + P +NA GR+ + N    LL   D +E + +A++++  N+ R+ +   + ++A   
Sbjct: 286 GFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTM 345

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
           V           V V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E
Sbjct: 346 VDL------DKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLE 398

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
             +I    +      I    GGHA AAG+T+   N G+L D    + ++           
Sbjct: 399 SINI--FHALDDHRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIDTSAKNTL 456

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES 535
            +D  L  S +++  I  LE   P+G  N  PVF   +  +   R +     HL+   + 
Sbjct: 457 NLDEELQLSELSLDTIKSLEKLAPFGMDNKKPVFWLRDITVTQARTMGQNGAHLKFKVK- 515

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           Q  ++   +AF      L +   Q++G  + +   L VN W G    QL + DA      
Sbjct: 516 QGKDSFDVVAFNKGN--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVDGVQ 571

Query: 596 HFAKK 600
            F  +
Sbjct: 572 LFDFR 576


>gi|145635063|ref|ZP_01790769.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittAA]
 gi|145267671|gb|EDK07669.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittAA]
          Length = 575

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGFQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDELNQMRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         I++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +   + +       +   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 YFADFQHLFNQTIADWLDEEHLQGIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574


>gi|331654390|ref|ZP_08355390.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           M718]
 gi|331047772|gb|EGI19849.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           M718]
          Length = 577

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++     L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGML-SWQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      + +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSDIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|323188709|gb|EFZ73994.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           RN587/1]
          Length = 577

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
            P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  FPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI+G  +  ++        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDVLERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|317493834|ref|ZP_07952251.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918161|gb|EFV39503.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 577

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 179/566 (31%), Positives = 279/566 (49%), Gaps = 22/566 (3%)

Query: 38  AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            +  ++ RV  NR + ++      L  S++ L+     L+  ++A   + QA+   ++I+
Sbjct: 21  DLHPLLRRVYANRGILNVQE----LERSVKGLLSY-QKLSGIERAVELLHQALSEHQRIV 75

Query: 97  IFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
           I GD+D DGA S AL M  L      N    +P+R  DGYG +P ++E+    GA+LI+T
Sbjct: 76  IVGDFDADGATSTALSMLALRSMGAANVQYLVPNRFEDGYGLSPEVVEQAAAMGAELIMT 135

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G +S+  +  A ++GI V+V DHH        A A+VNPN  D       L   GV 
Sbjct: 136 VDNGISSHAGVDNAHDRGIKVLVTDHHLPGETLPAADAIVNPNLNDCDFPSKSLAGVGVA 195

Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           F +++ + + L +      +     +L  LLDLVAL TV DVV L   NR  V +GL   
Sbjct: 196 FYLMLALRKHLHEHGWFEKHGISAPNLADLLDLVALGTVADVVALDTNNRILVHQGLNRI 255

Query: 272 RR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           R  +   G++AL+E  N     + A +LG+ +GP +NA GR+   ++G  LL+ +D  + 
Sbjct: 256 RAGKCRVGIRALLEISNRDARQLVASDLGFALGPRLNAAGRLDNMSVGVELLLCEDMPQA 315

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAA 388
             LA  LD LN  RR +E  M  +A       +   ++    + +    WH G+VG+LA+
Sbjct: 316 RALASDLDSLNVTRREIEQGMQVEALQICSELERTTVEMPYGLALYHPEWHQGVVGILAS 375

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGL 446
           R+KE+F RP  A +   DG   GSGRSI G  +   +    +   G+++K GGHAMAAGL
Sbjct: 376 RIKERFYRPVIAFAPAGDGILKGSGRSIHGLHMRDALERIDSQNPGLIMKFGGHAMAAGL 435

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++E   F      F +     + A     V   DG L    +++   ++L   GP+G   
Sbjct: 436 SLEEARFDEFRLRFAELVGEWLDASQLEGVIWSDGELAMDELSLPTAELLRDGGPWGQAF 495

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P+P F     K+   R+V   HL++  E       L  IAF V  T   +       + +
Sbjct: 496 PDPTFDGK-FKILQQRLVGERHLKLMVEPVGGGPLLDGIAFNVDTTLWPD----PSVREV 550

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASP 591
            +   L +N +RG++  QL +    P
Sbjct: 551 ELAYKLDINEYRGNRSVQLMIQHLWP 576


>gi|170765783|ref|ZP_02900594.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia albertii
           TW07627]
 gi|170124929|gb|EDS93860.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia albertii
           TW07627]
          Length = 577

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 282/566 (49%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRNAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSVLAMRSLGCANIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +++A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVEHARALGIAVIVTDHHLPGDTLPAAEAIINPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R
Sbjct: 197 YLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSILGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P
Sbjct: 437 LEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + 
Sbjct: 497 EPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +T  L +N +RG++  Q+ + +  P+
Sbjct: 552 LTYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|301300880|ref|ZP_07207052.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851479|gb|EFK79191.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 777

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 193/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W  +   E  +    + ++   P IV ++L+ R     +   +FL+P  R L  DP  
Sbjct: 6   KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +    RI QAI N EKI+I+GDYDVDG  S ALM   L         YIPDR  DG
Sbjct: 64  MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEHYIPDRFKDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN  + ++ I+EG  LI+TVD G   ++A+ YA   G+DV+V DHH++      AYA+
Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +     G L   GV F V   +   L QD           +LDLVAL TV D+V
Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V  GL + ++   PGL++L +   I    IT E +G+ + P +NA GR+  
Sbjct: 233 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRMEN 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG  LL + D +  E LA   + LN  R+   + ++E+A A++  +    +   V VV
Sbjct: 293 GSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKS---ENHLVNVV 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432
            G+ WH G+VG++A+RL +  G+PS  +S +E  G   GSGRSIE F +    +      
Sbjct: 350 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQM--FDALDSHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH MA GL++++     L     +          T PV K+   +N   VN+ L
Sbjct: 408 ILMKFGGHHMACGLSLDKEKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLDL 466

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              LE+  P+G  NP PVF F ++++ +++ +     HL++  +S +S+ + A+ F +  
Sbjct: 467 EAQLEALAPFGTDNPRPVFEFKDYEVNAVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + E         + + G L  N W+     Q+ + D 
Sbjct: 526 KKISEIERNKN--SVRLIGTLGKNVWQSRVNLQIMIEDI 562


>gi|332534751|ref|ZP_08410579.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035838|gb|EGI72322.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 573

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/564 (31%), Positives = 276/564 (48%), Gaps = 19/564 (3%)

Query: 38  AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            +  ++ ++  NRNV + D     LN S+  L  D  +  D DKA+  +++A+    +I+
Sbjct: 19  NLHPVIKQIYANRNVFNADE----LNNSVATLH-DFKLFKDIDKASDLLIEALKAQSQIL 73

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
           I GD+D DGA S A +M+ L        +  IPDR   GYG +P+L E+ +     L+IT
Sbjct: 74  IVGDFDADGATSTATLMQGLEMFGFKHLDYLIPDRFSLGYGLSPALAEQIVQIKPDLVIT 133

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G +    +      GI V+V DHH    +   A A+VNPNR +       +   GV 
Sbjct: 134 VDNGISCIAGIDILKAVGIKVLVTDHHLQGEQLPNADAIVNPNRHECSFPSKSIAGVGVA 193

Query: 216 FLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           F +L+ +  ++R           +L +LLD+VAL TV DVV L   NR  V +GL   R 
Sbjct: 194 FYLLIALRSVMRDLGYFEQQPPPNLANLLDIVALGTVADVVALDANNRTLVHQGLARIRS 253

Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG+ ALIE  N + + ++A + G+ + P +NA GR+ + +LG   L+S D  +   
Sbjct: 254 GKTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSTDINQARS 313

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E  M  +A+A +             I +  D WH G++G+LA RL
Sbjct: 314 IAGELDSLNFARREIEQGMQAEAQAVLDRLAFSDDNVPDAICLFQDDWHQGVIGILAGRL 373

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KEK+ RP+   +  E+G+  GS RSIEG  +  ++      E  ++ K GGHAMAAGL++
Sbjct: 374 KEKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTAEPHLINKFGGHAMAAGLSI 433

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              +F      F       +       +   DG L      +    +L+ +GP+G   P 
Sbjct: 434 NEQHFNDFKKAFDAAVSAQLSEESKRCIVFTDGELPNDCFTMEFAQLLKQSGPWGQQFPE 493

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           PVF     ++   R+V   HL++  + Q    + AIAF +      +    +  K + V 
Sbjct: 494 PVFEHT-FEVIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPD----TEAKFVKVA 548

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L +N +RG    QL V +   V
Sbjct: 549 YQLDINEFRGKFTLQLIVRELEKV 572


>gi|329963057|ref|ZP_08300837.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fluxus
           YIT 12057]
 gi|328529098|gb|EGF56028.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fluxus
           YIT 12057]
          Length = 582

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/582 (27%), Positives = 270/582 (46%), Gaps = 22/582 (3%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +W       E    +  +     I  I+ R+LV R + +   A+ F  P +  L  DP +
Sbjct: 15  KWNYQPITSEQAEISQQLALDLGISPILGRLLVERGIHTAADARKFFRPQLPDLY-DPFL 73

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A  R+ +A+   E+I+I+GDYDVDG  +VAL+ +F+     N + YIPDR  +G
Sbjct: 74  MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 133

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++     G  LII +DCG  + D + YA  +GID I+ DHH       PA A+
Sbjct: 134 YGVSTKGVDYAAETGVGLIIVLDCGIKAVDEITYAKEKGIDFIICDHHVPDDTLPPAAAI 193

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  R D+     HL   GV F  +         +        L+ LLDLVA++   D+V
Sbjct: 194 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 248

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P++G NR     GL       + GLKA+I+        IT  ++ + IGP INA GRI  
Sbjct: 249 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLTEKEITVSDIVFKIGPRINASGRIQN 308

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   D       A +++  N+ R+ ++ +M E+A  +++   + + +   IV+
Sbjct: 309 GKEAVDLLTEKDFSLALEKASQINQYNETRKDLDKSMTEEA-NQIVADLEGLAERRSIVL 367

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL E + RP+  ++  +D    GS RS+ GFD+ K +       +
Sbjct: 368 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 424

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL+++  N     + F+ F    +    T+ +  I+  ++   +     
Sbjct: 425 LENFGGHTYAAGLSMKVENVPAFTERFENFVSEHILPEQTSALIDINAEIDFRDITPKFC 484

Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549
             L+   P+G  N  P+F   N     + +VV     H+++     + +  +  IAF   
Sbjct: 485 SDLKKFNPFGPDNVKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 544

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                        +   +   +  N  +     QL++ D  P
Sbjct: 545 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 581


>gi|82778342|ref|YP_404691.1| ssDNA exonuclease RecJ [Shigella dysenteriae Sd197]
 gi|81242490|gb|ABB63200.1| ssDNA exonuclease, 5' --> 3' specific [Shigella dysenteriae Sd197]
          Length = 577

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG N  ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLNLEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  +++A + GI VIV DHH        A A++NPN  +       L   GV F 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRNCNFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R 
Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+
Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRS++G  +   +        G+++K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSVQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +   +       DG L+ + + + +  +L  AGP+G   P 
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + +L   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG++  Q+ + +  P+
Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577


>gi|262274921|ref|ZP_06052732.1| single-stranded-DNA-specific exonuclease RecJ [Grimontia hollisae
           CIP 101886]
 gi|262221484|gb|EEY72798.1| single-stranded-DNA-specific exonuclease RecJ [Grimontia hollisae
           CIP 101886]
          Length = 575

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 184/567 (32%), Positives = 285/567 (50%), Gaps = 21/567 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP ++ R+  NR ++ +     L  S R L+ +   L   ++A   +  A+    +I++
Sbjct: 18  SIPPLLQRIYANRGITSE---RELERSARGLL-NYSELYGIERAVALLAAAMAEGRRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +         N +  +P+R  DGYG +P ++E+   +GA+LI+TV
Sbjct: 74  VGDFDADGATSSALSVTAFRMMGCTNVDYLVPNRFDDGYGLSPEVVEQAAAKGAELIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A  +GI V+V DHH        A A+VNPN  +       L   GV F
Sbjct: 134 DNGVSSIEGVAAAKARGIQVVVTDHHLPGETLPDADAMVNPNLNECGFPSKSLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  LLDLVAL TV DVV L   NR  V +GLM  R
Sbjct: 194 YLMLALRAHLREIGWFAQRGMPEPNLAELLDLVALGTVADVVSLDTNNRILVHQGLMRIR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++ALIE  N +   + A + G+ +GP INA GR+ + + G  LL+  + Q   
Sbjct: 254 AGKCRPGIQALIEVSNRNMATLVANDFGFALGPRINAAGRLDDMSFGIELLLCQNLQAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ+R+ +E  M E+A A                + +    WH G++G+LA+
Sbjct: 314 QMASELDALNQSRKEIEQGMKEEAMAICERLQFGEGSSLPCGLALFQREWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+K+KF RP  A +   DG   GS RSI G  +   +        G++ K GGHAMAAGL
Sbjct: 374 RIKDKFHRPVIAFADGGDGMIKGSARSIPGLHMRDTLDLMDTQNPGLIKKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+   +F R    F +   N +       V   DG L ++ + + + +ML S GP+G G 
Sbjct: 434 TIAEADFTRFSKLFDEAVRNTISEEELKGVLLSDGELLSNEITLDVAEMLRSGGPWGQGF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P P+F     KL   ++V   HL+M  E     + + AIAF +      +       + +
Sbjct: 494 PEPLFDGK-FKLLHQKLVGGKHLKMMLEPVMGGQMVDAIAFNIDLRRWPD----PSVQMV 548

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +  HL +N +RG++  QL V   + V
Sbjct: 549 ELAYHLDINEFRGNRAVQLMVEHMAAV 575


>gi|332308049|ref|YP_004435900.1| single-stranded-DNA-specific exonuclease RecJ [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175378|gb|AEE24632.1| single-stranded-DNA-specific exonuclease RecJ [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 572

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/565 (30%), Positives = 284/565 (50%), Gaps = 19/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +I   + ++   R ++ +     L  S + L+     ++    A R +  A+  S++I+I
Sbjct: 17  SINPTLKQIYATRGITSEQQ---LERSAKALLHY-KDMSGVGDAVRILADALAQSKRIII 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL M  L      N +  +P+R   GYG +P +++    +GAQ+I+TV
Sbjct: 73  VGDFDADGATSTALSMLALGMMGCKNHDYLVPNRFNFGYGLSPQIVDVAHEQGAQVIMTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  ++ A   GI V++ DHH        A A+VNPN+ +      +L   GV F
Sbjct: 133 DNGIACFAGVERAKELGITVLITDHHLAAESLPIADAIVNPNQPNCSFMSKNLAGVGVAF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR  +    N     +L  LLD+VAL TV DVVPL   NR  V +GL+  R
Sbjct: 193 YLMLALRAHLRGVDWFAQNDIDVPNLADLLDIVALGTVADVVPLDENNRILVHQGLLRIR 252

Query: 273 -RQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++ALIE            +LG++IGP +NA GR+ + ++G   L++D   + +
Sbjct: 253 SDKCRPGIQALIEVAGRDKRKMVASDLGFVIGPRLNAAGRLDDMSMGIECLLTDSDYKAK 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A++LD LN+ RR +E +M ++A   + + Q  +      +V+    +H G++G+LA R
Sbjct: 313 QIAVELDSLNRERREIEQSMQQEAVTALDSLQLSEQDMPHGLVLYQADFHQGVIGILAGR 372

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +KEK+ RP+ A + ++D    GS RSI G  I  ++        G+++K GGHAMAAGL+
Sbjct: 373 IKEKYFRPTIAFAHQDDEIIKGSARSIPGVHIRDLLEELSTRYPGLIIKFGGHAMAAGLS 432

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E          F + A   +           DG L A A+ +    +L+ AGP+G G P
Sbjct: 433 IEMAKLEEFKKRFTQLAQEHLAGKPLAGELISDGELPAQALTLEFSQLLKDAGPWGQGFP 492

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
            P+F     +L   R+V   HL+M       + + AIAF V            + K + +
Sbjct: 493 EPLFDGQ-FELVEQRIVGHKHLKMMLRMPTGKLVDAIAFNVDTQVWP----NEQCKHVEL 547

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG    Q  V   +P+
Sbjct: 548 AYKLDINEFRGRTSLQFLVEGLNPL 572


>gi|225677396|ref|ZP_03788363.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590540|gb|EEH11800.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 547

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 221/551 (40%), Positives = 322/551 (58%), Gaps = 13/551 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+   W     +    + L +TQ+  +P+I+AR+LV R V+I+ A DFL P IR L+
Sbjct: 7   KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D DKA  RI+ AI N E + IFGDYDVDGA S AL+ R+L    +++ +YIPD
Sbjct: 65  PDPFHLLDMDKAVSRIIWAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYG N   + +    G  L I+VDCG+ +Y  ++ A   G+D+IV+DHH    +  
Sbjct: 125 RVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247
            A A+VNPNRLD+ S   +L A GV FL++V + + LR+          DL  LLDLVAL
Sbjct: 185 SAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDV+ + GLNRA V +GL V   + N GL+ L + + I    +   LG+ IGP INA
Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIGE++LG+RLL +DD +E   +A+KL  LN  R+++E+  L +A A+          
Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
               ++    WH GI+G++A+RLKE+F  P+  IS   +G G  S RSI G DI   V  
Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIDAAVLS 420

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A    ++++GGGH+MAAG +++      L DFF +   N +         K D ++ A A
Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N++L + L+  GP+G GNP P F     K++   V+ + H++      D+  ++AIAFR
Sbjct: 477 INLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVRAIAFR 535

Query: 548 VYGTPLGEFLM 558
              T LG  + 
Sbjct: 536 SANTHLGSAIK 546


>gi|127511706|ref|YP_001092903.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella loihica
           PV-4]
 gi|126637001|gb|ABO22644.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella loihica
           PV-4]
          Length = 574

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/565 (32%), Positives = 288/565 (50%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  I+ +V  +R  ++D  +  L   +R     P  L D DKAA  I  A+   + I+I
Sbjct: 19  HLSPILKQVYASRGCTVDDCELALANLLR-----PNTLKDVDKAAAIIADAMAKQQSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L      N +  IP+R   GYG +P +++    +GA+L+ITV
Sbjct: 74  IGDFDADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVAQQKGAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH   +    A A+VNPN+L        +   GV F
Sbjct: 134 DNGISSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFASKAIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR             +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMSALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNRILVDAGLKRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+ AL+E    ++  I A + G+ +GP +NA GR+ E  LG   L+ DD     
Sbjct: 254 AGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMRAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ-CDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LN  RR +E+ M ++A   + +   ++ +    I +    WH G++G+LA+R
Sbjct: 314 RMASELDGLNAERRELETGMQQEALKSLESLSLNEAELPWGIALYQQDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++    A   G+++K GGHAMAAGL+
Sbjct: 374 IKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMIIKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +    F R    + +    ++     T     DG L+ + +N+AL   L SAGP+G   P
Sbjct: 434 LRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARELRSAGPWGQNFP 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL-QAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     ++   R+V   HL++  ES+  +T+  AIAF V  T   +  +Q       
Sbjct: 494 EPIFDG-VFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDATIQYA----E 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           V   L +N +RG++  QL V    P
Sbjct: 549 VAYKLDINEFRGNESLQLMVEQIEP 573


>gi|145633055|ref|ZP_01788787.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 3655]
 gi|144986281|gb|EDJ92860.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 3655]
          Length = 575

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR    +GLM  R +  
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARHC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         I++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   +         +   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHIFNQTVADWFDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574


>gi|68249760|ref|YP_248872.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 86-028NP]
 gi|68057959|gb|AAX88212.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 86-028NP]
          Length = 575

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/565 (29%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       +   DG LN++  N+   ++++S G +G   P P F
Sbjct: 435 HFADFQHIFNQTVADWLDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQEFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574


>gi|332878127|ref|ZP_08445856.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683865|gb|EGJ56733.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 565

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 172/581 (29%), Positives = 278/581 (47%), Gaps = 23/581 (3%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
            + W   L          + ++  +    A +L  R ++  D A  F +PS+  L  DP 
Sbjct: 2   NYIWEPKLL-PSEAIIEKLRRELHLSQTTATLLAQRGITTYDEAMHFFSPSLASLH-DPF 59

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D  KA  R+ +AI   EKI+I+GDYDVDG ++V+L+ R+LS+ +     YIPDR  +
Sbjct: 60  LMKDMHKAVARLSKAINTQEKILIYGDYDVDGTSAVSLLYRYLSNHTSLLYTYIPDRYTE 119

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++   ++G  LII +DCG  + D +QYAT++GID I+ DHH+  ++   A A
Sbjct: 120 GYGISFQGIDYAASKGCSLIIALDCGIKAIDKVQYATDKGIDFIIGDHHRPDAQVPDAVA 179

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP + D       LC  G+ F ++    + L          ++  LLDLVA+AT  D+
Sbjct: 180 ILNPQQADCPYPYKELCGCGIGFKLVQAYQQHL-----SRPFEEIRPLLDLVAIATAADI 234

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           V + G NR     GL V  +Q + G+ AL         +   ++ +   P INA GRI  
Sbjct: 235 VAMNGENRTLTYFGLEVINQQPSAGVDAL--LGENQKRVGIGDVVFKAAPRINAAGRIEH 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL   DS + +  A ++++LN  R+ ++S++ ++A A++  + +  Q     VV
Sbjct: 293 GKYAVALLTETDSHKAKEKAYEIELLNSERKELDSSITQEALAQI--EENGEQNRYSTVV 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RL E + RP+   +   D K   S RSI GFDI   +    E   
Sbjct: 351 FNPHWHKGVIGIVASRLIETYYRPTLVFTQSGD-KYAASARSITGFDIYDALEQCSEY-- 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT+    +    + F++     +  L   P    D  L  S +   LI
Sbjct: 408 LEQFGGHTYAAGLTLLPEQYPDFKEAFEQVVVQKLANLPRDPKICYDTQLPLSKITEKLI 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDS-ETLQAIAFRVY 549
            +L+   P+G  N  P+F   N       + +     HL++            A+AF + 
Sbjct: 468 GVLKRFEPFGPNNLPPLFYADNVIDTGFAKAIGKDEKHLKLNLREVGCPHYFGAVAFDLA 527

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   +   G+   +   +  N W G  R QLR+ D  
Sbjct: 528 DR----LPIVESGRPFSIIYSIEENIWNGIIRPQLRIHDIK 564


>gi|225010278|ref|ZP_03700750.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria
           bacterium MS024-3C]
 gi|225005757|gb|EEG43707.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria
           bacterium MS024-3C]
          Length = 566

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/582 (28%), Positives = 272/582 (46%), Gaps = 21/582 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
            W+ +  +    R   +++   I ++++R+L+ R VS  + AK F  P +  L   PL++
Sbjct: 2   NWIEIPLRA-PERIKELSESLGISNVLSRLLIQRGVSDFNAAKTFFRPEMSQLH-SPLLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A  RI+ A+   E I+++GDYDVDG  +VAL+  +L         YIPDR  +GY
Sbjct: 60  KDMALAVARIILAMEREEAILVYGDYDVDGTTAVALVADYLQQYYHKVATYIPDRYEEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++        LII +DCG  + D + YA  +GID I+ DHH        A A++
Sbjct: 120 GVSYQGIDFASENDIGLIIALDCGVKAIDKVVYAKEKGIDFIICDHHTPGPILPDAVAVL 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D       LC  G+ F ++  I   L           +   LDLVA A   D+VP
Sbjct: 180 DPKRSDCNYPYKELCGCGIGFKLIQAISMALEASE-----EVVYPYLDLVATAIGADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L G NR     GL+       PG KA +E       +T  +L + + P INA GR+    
Sbjct: 235 LDGENRTLAFLGLLQINSHPRPGFKAFLENFK-KPVVTLTDLNFTVSPRINAAGRMVHGA 293

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL + D  + + +A  ++  N  RR ++  + + A  ++          +  VV  
Sbjct: 294 HAVALLQTKDMAQAKQMAAAIEDNNTERRSLDQYITDNALKQIAGDL--ETTNATTVVYQ 351

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++G++A+RL E   RP+   +        GS RSI+G+D+ K +    E   L+
Sbjct: 352 PDWHKGVIGIVASRLIETHYRPTLVFTKSGH-VLAGSARSIKGYDVYKAIEACSEH--LI 408

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLT+    +    + F+ +    + + +  P   ID  L+ S ++   I +
Sbjct: 409 QFGGHMYAAGLTLAPEKYDDFKNAFESYVSTTLDSALKIPQINIDSPLSFSEISPKFIRI 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
           L+   P+G  NP PVF           +V+     HL+ T     +  +  +AF+     
Sbjct: 469 LKQMAPFGPENPIPVFKATGVYDTGYAKVIGADQTHLKGTLTQDGATKINFVAFKKADA- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                + S  K++ +  ++  N+W+G    QL++LD  P EG
Sbjct: 528 ---LALLSHQKKVDIVFNISENFWQGQTTIQLQLLDIKPHEG 566


>gi|50119717|ref|YP_048884.1| ssDNA exonuclease RecJ [Pectobacterium atrosepticum SCRI1043]
 gi|49610243|emb|CAG73686.1| single-stranded DNA-specific exonuclease [Pectobacterium
           atrosepticum SCRI1043]
          Length = 581

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 183/568 (32%), Positives = 276/568 (48%), Gaps = 24/568 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V        L   +  L+ +  +L+  DKA   +  A+     I+I 
Sbjct: 22  VPPLLRRLYAQRGVKGAQE---LERGLNGLL-NYRLLSGIDKAIDLLQLALAEKRCIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S  L +  L      N    +P+R  DGYG +P+++ +    GA++I+TVD
Sbjct: 78  GDFDADGATSTTLAVLALRSMGGENVKYLVPNRFEDGYGLSPAVVAQAATLGAEVIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEDAHRRGIAVLVTDHHLPGEILPDADAMINPNLPDCQFPSKALAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ ++  LR  +          +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 198 LMMALFVRLRDSDWFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGLNRIRA 257

Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG++AL+E  N   S + A +LG+ IGP +NA GR+ +  +G  LL+S+D  +  M
Sbjct: 258 GECRPGIRALLEVANRDASQLVASDLGFAIGPRLNAAGRLDDMTVGVELLLSNDITQARM 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA  LD LNQ+RR +E  M  +A     + +    +    + +    WH G+VG+LA+R+
Sbjct: 318 LANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   DG   GSGRSI G  +   +        G++ K GGHAMAAGL++
Sbjct: 378 KERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMAAGLSL 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPYGAGNP 507
               F      F +     +       V   DG L    +N ++  +ML  AGP+G   P
Sbjct: 438 HEDRFEDFRQRFGELVGEWIDPSQLEGVVWSDGELALPELNLLSTAEMLRYAGPWGQEFP 497

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLMQSRGK 563
            P F     ++   R++   HL+  FE   +      L  IAF V  T   +       K
Sbjct: 498 EPTFDGC-FRIIKPRLLKERHLKAMFEPIGATGPVPLLDGIAFNVDTTVWPD----PSIK 552

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + +   L +N +RG +  QL +    P
Sbjct: 553 EVEMVYRLDINEFRGKRSVQLLIQHLWP 580


>gi|149192201|ref|ZP_01870418.1| ssDNA exonuclease RecJ [Vibrio shilonii AK1]
 gi|148833959|gb|EDL50979.1| ssDNA exonuclease RecJ [Vibrio shilonii AK1]
          Length = 579

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/570 (31%), Positives = 283/570 (49%), Gaps = 25/570 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP ++ R+ ++R V+       L  + R L+     L   D A   + +AI   ++I++
Sbjct: 18  SIPSLLRRLYLSRGVTD---VAQLEKTARGLISY-QQLAGIDAAVALLFEAIKQQKRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L      N +  +P+R  DGYG +P ++++ I  GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +QYA + G+ V+V DHH   +E     A+VNPN  +       L   GV F
Sbjct: 134 DNGVSSISGVQYAKDNGLQVLVTDHHLPGAELPNVDAMVNPNLNECGFPSKALAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   +R+             L+ L+DLVAL TV DVVPL   NR  V +GL   R
Sbjct: 194 YLMMALCVFMRKQGWFAKQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253

Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG++ALIE        + A + G+ +GP INA GR+ + + G  LL+SD+     
Sbjct: 254 AGKARPGIQALIEIAKRDARKLVASDFGFALGPRINAAGRLDDMSFGVELLMSDNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M ++A A        D  +    + +    WH G++G+LA+
Sbjct: 314 RMASELDGLNQTRKDIEEGMKQEALAFCERLQISDKSELPYGLALFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+K+KF RP  A +   +G   GS RSI+G  +   +        G+++K GGHAMAAGL
Sbjct: 374 RIKDKFHRPVIAFADGGEGTIKGSCRSIQGLHMRDALDRIDTQNPGLILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+   ++ R    F +     +       +   DG L     ++   + L + GP+G   
Sbjct: 434 TIMEKDYERFSKLFDEVVRAELGDTALKGIILSDGELTPEEFSMHTAEQLRAGGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P+P+F     K+   ++V   HL++  E        +  L AIAF V      +    + 
Sbjct: 494 PDPLFDGE-FKVLHQKLVGEKHLKLMVEPMHKGFGTNIMLDAIAFNVDLRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            K + +   L +N +RG++  QL V    P
Sbjct: 549 VKTVTLAYKLDINEFRGNQSLQLMVDHIEP 578


>gi|291514813|emb|CBK64023.1| exonuclease RecJ [Alistipes shahii WAL 8301]
          Length = 569

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/579 (30%), Positives = 278/579 (48%), Gaps = 33/579 (5%)

Query: 33  ITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           +     I  ++A +LV R +   + A+ F  PS+  L  DP ++ D +KA  R+ QA+ N
Sbjct: 2   LAAALRISPVLANLLVQRGIDTVEKAEKFFKPSLADLH-DPFLMKDMEKAVERVEQAVAN 60

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGA 150
            EKIM++GDYDVDG  +VAL+ +FL      N   YIPDR  +GYG +   ++    +G 
Sbjct: 61  QEKIMVYGDYDVDGCTAVALVYKFLRQIGHKNLMFYIPDRYTEGYGISIKGIDLAARKGV 120

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            LII +DCG  + + + YA  +G+D I+ DHH    E   A A+++P R+D       L 
Sbjct: 121 GLIIALDCGIKATEKVVYAKTKGVDFIICDHHLPAEEIPKAVAVLDPKRVDCSYPFDELS 180

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
             GV F ++    +  R          +L LLDL+ ++   D+VPL+G NR     GL  
Sbjct: 181 GCGVGFKLVQAYAQKNRM-----PFEQILPLLDLLVVSIASDIVPLVGENRILAYFGLKN 235

Query: 271 ARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL-----------GS 318
             R+ + GL ++I+        IT +++ + IGP INA GR+                  
Sbjct: 236 LNREPSKGLLSIIKICGLDKHNITIDDIVFKIGPRINAAGRMRMDENDENASPSGGHAAV 295

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            LLI  +    E     +D  NQ+R+ ++ ++ ++A   +     +++     V+   RW
Sbjct: 296 ELLIEGNESIAEEFGSVIDAYNQDRKSIDRSVTQEAHDYIEGN-PEMKALKSTVIYNPRW 354

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
             GIVG++A+RL E + RP+  ++   +G   GS RS+ GFD+ + V       +L   G
Sbjct: 355 MKGIVGIVASRLIETYYRPTVVLT-MSNGFVTGSARSVPGFDLYQAVESC--SDLLENFG 411

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH  AAGLT+   N G     F  +    +   +  P   ID  L  S +  A    L  
Sbjct: 412 GHMYAAGLTMRPENVGEFTRRFNAYVEENIDPQMLVPQVDIDSELLFSDITPAFRKDLNR 471

Query: 499 AGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF--ESQDSETLQAIAFRVYGTPL 553
             P+G GN  PVFA          ++V +   HL+M      + +  +QAIAF+      
Sbjct: 472 FQPFGPGNTAPVFATCGVSNHGDAKLVGMECEHLRMDLMQRQKPNTKIQAIAFQQPT--- 528

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             +     G+ + V   +  N++RG+   QLR+ D  PV
Sbjct: 529 -HYEWVRSGRPIDVCYQIVENHYRGTVTTQLRIKDIKPV 566


>gi|260582143|ref|ZP_05849937.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae NT127]
 gi|260094775|gb|EEW78669.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae NT127]
          Length = 575

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   +         +   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFDDFQHIFNQTVADWFDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574


>gi|194468449|ref|ZP_03074435.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           reuteri 100-23]
 gi|194453302|gb|EDX42200.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           reuteri 100-23]
          Length = 775

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/578 (27%), Positives = 271/578 (46%), Gaps = 21/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           F+W              + ++  I  I+A +L  + +   + AK F  PS+  +  DP +
Sbjct: 6   FKWKL-ADNASSATVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIH-DPTL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QA+   E+I I+GDYD DG  S +LM   L     N N Y+P+R  DG
Sbjct: 64  LHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSVGANVNYYVPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN    ++ I+ G QL ITVD G +  + +      G+DV++ DHH++ ++   A A+
Sbjct: 124 YGPNMDAYQRLIDNGTQLFITVDNGVSGKNVIDKVMAAGVDVVITDHHELPADLPNAVAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P           L   GV F V   +      +            LDLVA+  + DVV
Sbjct: 184 VHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPIEE-----------LDLVAIGEIADVV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            +   N A +  G+   R+   PGL AL+E  +I  + +T +++G+ I P +NA GRI +
Sbjct: 233 NVTDENHALISYGIQQLRQGMRPGLAALMELADIKANNLTDQDIGFGIAPRLNALGRIAD 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N G +LL S D  E + LA ++D  N+ R+ + + ++++AE +        QQ   +++
Sbjct: 293 ANDGVKLLTSLDENESQKLAKEVDQANKERQNLVAEIMKEAEKQA--NSSANQQKKTLLI 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++A+R+  + G+P+   S +++   +  G            +      +
Sbjct: 351 VGKGWHQGVLGIVASRIMNETGKPTIVASTDQNNPTLIKGSGRSVDSFNLFNALEAHREL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
               GGH  A GL+ ++ N   L    ++ A+             I   L  + V   L 
Sbjct: 411 FTTFGGHPAACGLSFDQGNIAPLQIALEEEANQQKFDPTVKQTLPIAMQLEPADVTQQLY 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTP 552
           + ++   P+G GN  PVF   N K+  ++ +   H  + F     +  L  +AF      
Sbjct: 471 NDIQRVAPFGPGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSGKENLTVVAFGQGNLA 530

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               L+ +   ++++   + +N WRG K  QL + D  
Sbjct: 531 ---TLLSAPTGQVNLAVKVSLNEWRGKKSVQLMLEDLQ 565


>gi|315127591|ref|YP_004069594.1| single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Pseudoalteromonas sp. SM9913]
 gi|315016105|gb|ADT69443.1| single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Pseudoalteromonas sp. SM9913]
          Length = 573

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/563 (31%), Positives = 280/563 (49%), Gaps = 17/563 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   RNVS       LN S   L  D  +  D DKA++ +++A++   KI+I
Sbjct: 19  HLHPVIKQIYATRNVSHADE---LNNSAATLH-DFKLFKDIDKASQLLIEALHAQSKILI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S A +M+ L+     + +  +PDR   GYG +P+L E+ +     L+ITV
Sbjct: 75  VGDFDADGATSTATLMQGLAMFGFTHLDYLVPDRFSLGYGLSPALAEQIVTMQPDLVITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +    +      GI V+V DHH    +   A A+VNPNR D       +   GV F
Sbjct: 135 DNGISCIAGIDIVKAAGIKVLVTDHHLQGEQLPNADAIVNPNRHDCDFPSKSIAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFD--LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            +L+ +   LR+      +    +  LLD+VAL TV DVV L   NR  V +GL   R  
Sbjct: 195 YLLIALRSALREQGYFNQHPMPNIADLLDIVALGTVADVVALDANNRTLVHQGLARIRSG 254

Query: 275 G-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG+ ALIE  N + + ++A + G+ + P +NA GR+ + +LG   L+S+D  +   +
Sbjct: 255 KTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSNDINQARRI 314

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD LN  RR +E  M  +A+A +             I +  D WH G++G+LA RLK
Sbjct: 315 AGELDSLNFARREIEQGMQVEAQAVLDRLAFKEDSVPDAICLYQDDWHQGVIGILAGRLK 374

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           EK+ RP+   +  E+G+  GS RSIEG  +  ++      + G++ K GGHAMAAGL++ 
Sbjct: 375 EKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTAQPGLINKFGGHAMAAGLSIN 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             +F      F       +       +   DG L     ++    +L+ +GP+G   P P
Sbjct: 435 EQHFTEFKRAFDSAVSAQLSEESKRCIVFTDGELPNDCFSMDFAQLLKQSGPWGQQFPEP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           +F     +L   R+V   HL++  + Q +  + AIAF +      +    +  + + V  
Sbjct: 495 IFEHT-FELIQQRIVGEKHLKLVLKHQSARLVDAIAFGIDVKAWPD----TEAQFVKVAY 549

Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592
            L +N +RG    QL V +   V
Sbjct: 550 QLDINEFRGKFSLQLIVRELEKV 572


>gi|238921198|ref|YP_002934713.1| ssDNA exonuclease RecJ [Edwardsiella ictaluri 93-146]
 gi|238870767|gb|ACR70478.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Edwardsiella ictaluri 93-146]
          Length = 575

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 181/565 (32%), Positives = 275/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP ++ R+  NR V        L   ++ L+     L   ++A   + +A+    +++I
Sbjct: 19  GIPPLLRRLYGNRGVCSA---AELERGVKGLLSY-QQLNGIERAVVLLQEALAQRLRLVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     +     +P+R  DGYG +P ++E+    GA+LI+TV
Sbjct: 75  VGDFDADGATSTALSVLALRAMGCDSVQHLVPNRFEDGYGLSPEVVEQAATMGAELIMTV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A  +GI V+V DHH        A A+VNPN  D       L   GV F
Sbjct: 135 DNGVSSHAGVEAAHARGIRVLVTDHHLPGETLPAAEAIVNPNLADCDFPSKSLAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ + R L              +L  LLDLVAL TV DVV L   NR  V +GL   R
Sbjct: 195 YLMLALRRHLVDQGWFERLGRPAPNLADLLDLVALGTVADVVRLDTNNRILVYQGLSRIR 254

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E        +TA +LG+ +GP +NA GR+ + +LG  LL+SDD  +  
Sbjct: 255 AGRCRPGIRALLEVAKRDAPRLTASDLGFALGPRLNAAGRLDDMSLGVALLLSDDMPQAR 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAE-AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            LA  LD LNQ RR +E  M  +A       +    Q    + +    WH G+VG+LA+R
Sbjct: 315 ALASDLDALNQTRREIEQGMQSEALAICAGLERTLTQLPYGLALYHPEWHQGVVGILASR 374

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   +G   GSGRS+ G  +   +        G++ K GGHAMAAGLT
Sbjct: 375 IKERFYRPVIAFAPAGEGLLKGSGRSLPGLHMRDALERLDMQHPGLMQKFGGHAMAAGLT 434

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F       +       V   DG L++  + + + ++L   GP+G G P
Sbjct: 435 IEAARFDDFRHHFDTLVGEWLDPAQLEGVVWSDGALSSDELTLPVAELLRDGGPWGQGFP 494

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P F     ++   R+V   HL++  E       L  IAF V  T   +    +  + + 
Sbjct: 495 EPTFDGQ-FRILQQRLVGERHLKLMLEPLGGGPLLDGIAFNVDTTLWPD----ASVREVE 549

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  QL +    P
Sbjct: 550 LAYRLDINEYRGNRSVQLMIQHLWP 574


>gi|238926104|ref|ZP_04657864.1| possible single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           flueggei ATCC 43531]
 gi|238885994|gb|EEQ49632.1| possible single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           flueggei ATCC 43531]
          Length = 671

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 172/597 (28%), Positives = 292/597 (48%), Gaps = 34/597 (5%)

Query: 17  RWVSLLGQEGINRA--------LAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRL 67
           RW                     A+  +  +  I+ ++L  R + + + A+ FL+P+   
Sbjct: 2   RWEEEEKNVLKEWIVAQHTDEGDALAAEIGVTPIIGQLLWQRGIRTAEEARAFLHPA-DT 60

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
              DP ++ D ++ A R++ A+   E I+I+GDYDVDG  + AL+MR +     N + YI
Sbjct: 61  PFHDPFLMADMERGAERVLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLGGNVSYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG N   +++   EG +L++TVDCG  S D +  AT  G+D+++ DHH     
Sbjct: 121 PNRFTEGYGLNADALQQIAGEGCRLLVTVDCGIASVDTVAEATG-GMDIVITDHHLPGQM 179

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
              AYA++NP+R D    + +L   GV F ++  ++++ R+++           LD+ AL
Sbjct: 180 LPSAYAVMNPHRADCAYPEKNLAGVGVAFKLVQALWQMEREESF-------AEYLDIAAL 232

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306
            TV D+VPL+G NR  V  GL         G++ALIE        I    +G+ + P +N
Sbjct: 233 GTVADLVPLVGENRKIVQMGLRQMAEHPCVGIRALIEVAGLADKSINTGQVGFQLAPRLN 292

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  +  G+ LL+++D+     +A +L+ LN  RR +E  +L +AE ++     D+ 
Sbjct: 293 AAGRLETARHGAELLLTEDTACASRMAGELNALNTERRDLEQDILAEAERQLADFTPDV- 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
               IVV G+ W+ G++G++A+RL EK+ RPS  ++  +D    GS RSI G  + + +S
Sbjct: 352 --PAIVVAGEEWNAGVIGIVASRLVEKYYRPSIVLTRRDD-VYKGSCRSIAGLHLYEALS 408

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                  L++ GGHAMAAGLT+           F +     + A    P   +  +   +
Sbjct: 409 AC--RDTLIQFGGHAMAAGLTLSCERLSDFRRAFSEAVRTRLTAQDFIPKVAVSALAAPA 466

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI 544
              +  ++ L    PYG GNP P+F   N + Q    +     HL+M   +++   + A+
Sbjct: 467 DWTVETVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDIGTREHH-ITAL 525

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH-HFAKK 600
            +      L   L +       +     +N W+G +  Q  V   +P      F ++
Sbjct: 526 YWNAGD--LATVLTEEDS---DLAYTPSINEWQGERSVQCMVDTVTPAAHERIFPER 577


>gi|329124055|ref|ZP_08252602.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           aegyptius ATCC 11116]
 gi|327467480|gb|EGF12978.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           aegyptius ATCC 11116]
          Length = 575

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 283/565 (50%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        ++ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHIKNTKE---VDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR    +GLM  R +  
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARHC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDELNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         I++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +   + +       +   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 YFADFQHLFNQTIADWLDEEHLQGIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  QD   L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQDGGLLDAIAFNIDTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574


>gi|309973323|gb|ADO96524.1| Single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae R2846]
          Length = 575

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/565 (29%), Positives = 281/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   ++A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQKQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R +  
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHIFNQTVADWLNEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574


>gi|1373410|gb|AAB02261.1| RecJ [Erwinia chrysanthemi]
          Length = 575

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/565 (32%), Positives = 276/565 (48%), Gaps = 19/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++P ++ R+   R V        L  S+R L+ D  +L    +A   + QA+ ++ +I+I
Sbjct: 20  SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGITQAVEVLRQALADNRRIVI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D D A S AL +  L   +       +P+R  DGYG +P ++ +   +GA+LI+TV
Sbjct: 76  VGDFDADRATSTALTVLALRSMAAREVQYLVPNRFEDGYGLSPEVVAQAPAKGAELIVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A  +GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 136 DNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  LLDLVAL TV DVVPL   NR  + +GL   R
Sbjct: 196 YLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIR 255

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++AL+E  N   + + A +LG+ +GP +NA GR+ + ++G  LL+     +  
Sbjct: 256 AGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCKHIVQAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           MLA  LD LNQ+RR +E+ M  +A       +         + +   +WH G+VG+LA+R
Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALHLCEQLERTRDTLPLGLAMYHPQWHQGVVGILASR 375

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV-KGGGHAMAAGLTV 448
           +KE+F RP  A +   DG   GSGRSI G  +  +         L+ K GGHAMAAGL++
Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLHALERLDTCHPGLMLKFGGHAMAAGLSL 435

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
               F      F       + A     V   DG L +  V +   +ML  AGP+G   P 
Sbjct: 436 VEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPDVTLGTAEMLREAGPWGQAFPE 495

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     +L   R+V   HL++  E       L  IAF V      +    S  + + +
Sbjct: 496 PTFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD----SSVREVEL 550

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L VN +RG +  QL +    P+
Sbjct: 551 AYKLDVNEFRGKRSVQLLIEHLWPL 575


>gi|227509463|ref|ZP_03939512.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191175|gb|EEI71242.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 776

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 186/585 (31%), Positives = 281/585 (48%), Gaps = 28/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S F+W          +  A+++   I  ++A +L+ R VS + A +DFL PS +    DP
Sbjct: 4   SKFKWQIR-QNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  K   RI  A+ N E+I ++GDYD DG  S  +M   L+    N + YIP+R  
Sbjct: 62  YLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRFS 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    EK IN G  LIITVD G    +A+  A +   DV+V DHH +      AY
Sbjct: 122 DGYGPNVDAFEKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAY 181

Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           A+++P   N+       G L  AGV   V   +   L  D            +D+ A+ T
Sbjct: 182 AIIHPRVKNQEGRAYPFGDLSGAGVALKVAQALMEDLPID-----------FIDVAAIGT 230

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308
           V D+V L   NRA V  GL   R    PGL ALI+  +I  S    +++G+ I P +N+ 
Sbjct: 231 VADIVSLKDENRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSL 290

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRI ++N+G  LL + D Q+   LA   D  N +R+ +     +QA   V +   D +  
Sbjct: 291 GRIDDANIGVELLSTFDDQKATELAKFADHQNDSRKSLVDEFYQQAVQMVES-SGDAENR 349

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF 427
           S +VV GD WH G++G++A++L EK+GRP+  ++ ++      GSGRS+E FD+    + 
Sbjct: 350 STLVVVGDDWHQGVLGIVASKLVEKYGRPTIVLTSQDGNDQVKGSGRSVESFDL--FSAI 407

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  +  GGH  A GLT+ +     L D  +K A +    L   P   I   ++A  
Sbjct: 408 DPIRDQTIGFGGHHSAVGLTINKDKISVLKDQLEKAAEDQELDLSQKPTLDIAAKISADQ 467

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545
           ++   I  L    P+G  NP PVF     +L  ++ +     HL+ +   ++   L A+A
Sbjct: 468 IDNQFIKNLNVLAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLV-KNKSRLTAVA 526

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           F           + +    + V+G +  N W      QL V D  
Sbjct: 527 FGQGAAAGQ---LSNGSASIKVSGEINENTWNNHTTIQLMVSDLK 568


>gi|253578287|ref|ZP_04855559.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850605|gb|EES78563.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 570

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 282/584 (48%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +WV    +   N+   I Q+  I  ++AR++ NR+ +  D  +++L+ +++ L P P ++
Sbjct: 3   KWVIAAKRADFNQ---IGQQFHIDPVIARLIRNRDVIGEDKIREYLSGTVQEL-PSPWLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA   + + I    K+ I GDYD+DG  S  ++M+ L+    + + YIPDR+ DGY
Sbjct: 59  KDMEKAVDILEKKISQKAKVRIIGDYDIDGVTSTYILMKGLARIGADVDTYIPDRVADGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  L+E+   +    I+T D G  +   +Q A ++G+ VI+ DHH+V   E       
Sbjct: 119 GIHAHLIERAETDRIDTIVTCDNGIAAAAEIQMAKDKGMTVIITDHHEVPYREEKGERQM 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A++NP + D      +LC A V F  +  +Y             +L    +L A
Sbjct: 179 VLPPADAILNPKQYDCPYPNKNLCGAVVAFKYIAALYERFGV-----PAEELEDYYELAA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           +ATV DV+ L G NR  V +GL   +   N GL+ LI   +   + ITA ++G+++GP I
Sbjct: 234 IATVGDVMDLQGENRILVKEGLCRLKNTKNQGLQELIRANSLEDAKITAYHIGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +   +E   LA  L  LNQ+R+ +     E+A   +  +  ++
Sbjct: 294 NASGRLDTAARSLALLNAKTKEEAARLAGDLTALNQSRKALTEKGKEEAIRII--ETTEL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +   V+VV     H  + G++A R++EK+ RP+F ++  E     GSGRSIE + +    
Sbjct: 352 KNDRVLVVYLPDCHESLAGIIAGRIREKYHRPAFVLTGGETS-AKGSGRSIESYSMY--E 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  ++++ GGH MAAGL++E  N            +  +      P   ID  +  
Sbjct: 409 ELVKCADLMIQFGGHPMAAGLSIEEKNIEEFRRRLN--VNCTLTDEELRPKIVIDVPMPV 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           S +   L++ +    P+G GN  PVFA  N ++    ++      +++        +++ 
Sbjct: 467 SYITKELVEQISLLEPFGKGNTKPVFAQKNLRVLDHSIIGKNKNVVKLKLLDPQGISVEG 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           I F      +           + VT +  +N +RG +  Q+ + 
Sbjct: 527 IYFGEAEDFVN---FIREKDSISVTYYPEINRFRGRESLQIIIQ 567


>gi|301066602|ref|YP_003788625.1| single-stranded DNA-specific exonuclease [Lactobacillus casei str.
           Zhang]
 gi|300439009|gb|ADK18775.1| Single-stranded DNA-specific exonuclease [Lactobacillus casei str.
           Zhang]
          Length = 764

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 285/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           + ++W     Q     A A+++   +P  +A +L+ R ++     + F++P    L  DP
Sbjct: 2   TQYQWQLAP-QPAAADAHALSETLGVPPFLATLLLQRGINDQADYEAFVHPDTSRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI  +EKI I+GDYDVDG  S A+M+  L     + +++IPDR  
Sbjct: 60  FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G      +  A   G+DV+V DHH++ ++   A 
Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + + + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E  G+P+  ++  +DG+   GSGRSIE + + K +  A E
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              +V  GGH MA GLT +  +   +    +  A  ++   +  P   I   L  + + +
Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPIATRLEDADLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
               ++    P+G GNP PVF+     +Q+++ +     HL+   +      +  I F  
Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQAIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      +  + + +   L  N W+G+   QL + D    +      +
Sbjct: 520 GDA----AETLATAQTVKLAVQLDQNTWQGNTSLQLMLKDYEVKQPQVIDWR 567


>gi|304311877|ref|YP_003811475.1| Single-stranded DNA-specific exonuclease [gamma proteobacterium
           HdN1]
 gi|301797610|emb|CBL45831.1| Single-stranded DNA-specific exonuclease [gamma proteobacterium
           HdN1]
          Length = 576

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/583 (30%), Positives = 284/583 (48%), Gaps = 22/583 (3%)

Query: 23  GQEGINRALAITQKHA--IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
            +    R   I    +  I  ++ R+   R +  D     ++ ++  L+P P  L    +
Sbjct: 2   QKNISRRVSKIPAAFSDQIHPLLQRIYAARGILSD---AEVDRALSRLLP-PDRLKGLPE 57

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNP 139
           A   +V A+ N + I+I GD+D DGA S  L +  L        +  +PDR   GYG  P
Sbjct: 58  ALALLVAALQNDQSILIVGDFDADGATSSVLAVLALRAMGAQRVDYLVPDRFRYGYGLTP 117

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
           +++E        L+ITVD G +S + +  A   G+ V+V DHH   ++   A A+VNPN+
Sbjct: 118 AIVEVAQQRAPDLLITVDNGISSVEGVAAARRLGMRVLVTDHHLPGAQLPEADAIVNPNQ 177

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVP 255
                    L   GV+F V+  +   LR+             ++  LDLVAL TV DVVP
Sbjct: 178 PGCEFPSKALAGVGVIFYVMSALRSRLRELGWFAERGFVEPRMVEFLDLVALGTVADVVP 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V  GL   R     P ++AL E    + S + A +LG+ IGP +NA GR+ +
Sbjct: 238 LDANNRLLVHHGLQRIRAGNCRPAIRALAEIGKRNLSQLVAADLGFAIGPRLNAAGRLDD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372
            + G   L+++     + LA +L++LN  RR +E+ M ++A++ +     +  +    + 
Sbjct: 298 MSHGIECLLAEQESSAKALAEELNLLNAERREIEAGMQQEAQSALQQLALNTRELPFGLC 357

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G+LA+R+KE++ RP  A +  ++G+  GS RS++G  I  ++       
Sbjct: 358 LYNASWHQGVIGILASRIKERYHRPVIAFAKADNGEIKGSARSVQGVHIRDVLDAVASRH 417

Query: 433 I--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              + + GGHAMAAGL+++  +F      F       +       V + DG L  + +++
Sbjct: 418 PELISRFGGHAMAAGLSLQPEHFDAFRAAFDAEVRRWLTVEDLVGVIQSDGELAPAEIDL 477

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVY 549
            L D+L +AGP+G G P P+F     +L   +++   HL+MT   Q  +  L AIAF V 
Sbjct: 478 PLADLLRNAGPWGQGFPEPLFDGC-FELLEQKLLKEKHLKMTLGLQGTNRVLDAIAFNVD 536

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                +       K + +   L VN +RG +R QL V D  P 
Sbjct: 537 ----LQCWPNQNAKSVRLAYRLDVNEFRGVRRAQLLVEDLQPA 575


>gi|309751143|gb|ADO81127.1| Single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae R2866]
          Length = 575

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/565 (29%), Positives = 281/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   ++A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R +  
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQSDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSVQLLVDYIEPID 574


>gi|160942051|ref|ZP_02089366.1| hypothetical protein CLOBOL_06939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434942|gb|EDP12709.1| hypothetical protein CLOBOL_06939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 576

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/588 (29%), Positives = 283/588 (48%), Gaps = 32/588 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW+    +   +R   I +++ I  + AR++ NR +  ++    +L  S+  L  DP +L
Sbjct: 5   RWMLYAKKADFDR---IAEQYHISPVTARIIRNRGLEDMEDIGRYLYGSVEQLH-DPHLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+A   + +      +I I GDYD+DG  S  L+ R L       +  IPDRI DGY
Sbjct: 61  PDMDRAVEILGEKAAEGRRIRIVGDYDIDGVCSTYLLYRALKRIGAEVDYEIPDRIKDGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----------QVK 185
           G N  ++E    +G   I+T D G  +   +  A   G+ V+V DHH          + +
Sbjct: 121 GINELIIEAAAEDGIDTILTCDNGIAAISQIARAKELGMTVVVTDHHDILTEAGETPEGR 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA A+VNP R D L     +C   V + ++ ++Y + R         + LSLL++ 
Sbjct: 181 EILPPADAVVNPKRRDSLYPFPDICGGMVAYKLVQVLYEVHRV-----PREEWLSLLEIA 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATV DV+ L G NR  V +GL       N GL+ LIE+ N  +  ITA ++G++IGP 
Sbjct: 236 AIATVGDVMKLQGENRILVKEGLSRLGHTSNLGLRKLIEKNNLQAGTITAYHIGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GR+  + +   LL+ +D  E + +A +L  LN  R+ M    +EQA A V     +
Sbjct: 296 LNASGRLQTAKIALGLLLCEDEGEADRMAEELKALNDQRKDMTQEGIEQAAAMVDELYRE 355

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
            +   V+VV     H  + G++A RL+E++ +PS+ ++  E G   GSGRSIE + +   
Sbjct: 356 DK---VLVVFLPDCHESLAGIVAGRLRERYNKPSYVLTRAE-GCVKGSGRSIEAYHM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
            S    + +L+K GGH MAAG ++E  +         + A   +      P   ID  + 
Sbjct: 410 QSLVEVQDLLLKFGGHPMAAGFSLEEKDVDEFRRRLNENARERLTEEDFIPKVWIDVAMP 469

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +    I+ LE   PYG GN  P FA     ++S RV+      ++++  +     + 
Sbjct: 470 FEYITEPFIEELELLEPYGQGNEKPQFAQKGLFVRSARVMGRNRNVVRISLVNDRGTAMD 529

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + F      + E   +   + M +  +  +N + G++  Q+ V +  
Sbjct: 530 GVIFTDGDLFMEE---KGDCRVMDIIYYPGINEYNGNRNLQIVVKNWK 574


>gi|54297372|ref|YP_123741.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           pneumophila str. Paris]
 gi|53751157|emb|CAH12568.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella
           pneumophila str. Paris]
          Length = 579

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/570 (31%), Positives = 279/570 (48%), Gaps = 23/570 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ V R +S +     L+  ++ L+P    L   ++A  R+  A+ + ++I+I
Sbjct: 17  NVPDVLKRIYVTRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R   GYG  P+++E        LIITV
Sbjct: 73  IGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S++ +  A   GIDV++ DHH        A A+VNPN+   L     +   GV+F
Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ + R L   N          ++ S LDLVAL TV DVV L   NR  V +G+M  R
Sbjct: 193 YVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           + Q   G+KALIE        +   +LG+ I P +NA GR+ + +LG   LI+ D +   
Sbjct: 253 QGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386
               +LD LN  RR +ES M EQA   +     + ++       + +    WH G++G+L
Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGIL 372

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A R+KEK+ RP  A +   + +  GS RS+   +I  +++       G+++K GGHAMAA
Sbjct: 373 AGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GL++           F       +           DG L +  +++    +++ AGP+G 
Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
               PVF     ++   R+V   HL+MT   SQ  E L AIAF V            R K
Sbjct: 493 AFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWP----NHRTK 547

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            +HV   L +N+++G  R QL +   +PV+
Sbjct: 548 YIHVAYKLDINFYQGRTRLQLLIQAMNPVQ 577


>gi|145219325|ref|YP_001130034.1| single-stranded-DNA-specific exonuclease RecJ [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205489|gb|ABP36532.1| exonuclease RecJ [Chlorobium phaeovibrioides DSM 265]
          Length = 574

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/584 (28%), Positives = 276/584 (47%), Gaps = 20/584 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +RW      +    + A + K ++P  +AR+   R V S D A+ F   S+  L P P +
Sbjct: 4   YRWNLPPVDDAALTSFACSIKASLP--LARIFFMRGVKSYDAAEAFFTASLETL-PSPSL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                KA  R+ +AI + EKIMI+GDYDVDG    A++  FL     + + YI +R  +G
Sbjct: 61  FASMPKAVGRVQEAIRSGEKIMIYGDYDVDGITGTAMLNLFLRDRDADVSYYINNRFEEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   +         LIITVDCG ++  A++ A   G+DVIV DHH+   E   AYA+
Sbjct: 121 YGLSMEGIRAAAERQVGLIITVDCGISANLAIERAGELGMDVIVCDHHE-PEELPDAYAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV F  +  I   L+              LDLVA+AT  D+V
Sbjct: 180 LNPKVPGCSYPFRELCGCGVAFRFVQAIAEELQLS-----AESWQQYLDLVAIATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
            L   NR  V +G  + +++   G++A++  + ++   +    + + I P INA GR+G 
Sbjct: 235 VLSEENRTMVREGFRMMQQRPRVGIEAMLSFMKVNPRDLGMTGVTFGIAPRINAAGRMGS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +      L+++   E      +L+ LN  RR  +  ML++AE  V  +       S IV+
Sbjct: 295 ARKAVDWLLAESKDEAHKHTGELEELNILRRRTDLEMLKRAEEMV--EGHFASYCSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G+VG++A+++ E++  P+  +   ++    GS RS+ G +I  ++       +
Sbjct: 353 YDESWHLGVVGIVASKMLERYHLPTVILGASKE-LVKGSVRSVPGLNIYSVLQEC--SDL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG+++   N       F + +  ++          +D  L    +    +
Sbjct: 410 LEQFGGHHQAAGVSMRPENLPAFRKRFDEISARVLDMDARQKELTVDTELGLGEITGNFM 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
             L+   PYG GNP P+F     +   S+R++   H++        + L  IAF      
Sbjct: 470 KALQRFSPYGVGNPEPLFLTEGLQCTGSVRLLKERHVKFMVRDASGKRLDVIAFDRKD-- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
           + + LM+S G+   +   L ++ W G    Q +V D S VE  H
Sbjct: 528 IYDALMESSGQSFSMVYSLELHEWNGRVEPQAKVKDLS-VESLH 570


>gi|16803565|ref|NP_465050.1| hypothetical protein lmo1525 [Listeria monocytogenes EGD-e]
 gi|224501535|ref|ZP_03669842.1| hypothetical protein LmonFR_03292 [Listeria monocytogenes FSL
           R2-561]
 gi|16410954|emb|CAC99603.1| lmo1525 [Listeria monocytogenes EGD-e]
          Length = 783

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 288/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   +A+ YIP+R  
Sbjct: 61  FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +++  GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +  + V++
Sbjct: 405 RDLMMAFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    + ++  TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEKNDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|239631367|ref|ZP_04674398.1| single-stranded DNA-specific exonuclease [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525832|gb|EEQ64833.1| single-stranded DNA-specific exonuclease [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 764

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 283/592 (47%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           + ++W     Q     A A+++   +P  +A +L+ R ++       F++P    L  DP
Sbjct: 2   TQYQWQLAP-QPAAADAHALSETLGVPPFLATLLLQRGINDQADYDAFVHPDTSRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI  +EKI I+GDYDVDG  S A+M+  L     + +++IPDR  
Sbjct: 60  FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G      +  A   G+DV+V DHH++ +    A 
Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPANLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + + + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E  G+P+  ++  +DG+   GSGRSIE + + K +  A E
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              +V  GGH MA GLT +  +   +    +  A  ++   +  P   I   L  + + +
Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPIATRLEDADLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
               ++    P+G GNP PVF+     +Q+++ +     HL+   +      +  I F  
Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQAIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      +  + + +   L  N W+G+   QL + D    +      +
Sbjct: 520 GDA----AETLATAQTVKLAVQLDQNTWQGNTSLQLMLKDYEVKQPQVIDWR 567


>gi|71281781|ref|YP_270749.1| single-stranded-DNA-specific exonuclease RecJ [Colwellia
           psychrerythraea 34H]
 gi|71147521|gb|AAZ27994.1| single-stranded-DNA-specific exonuclease RecJ [Colwellia
           psychrerythraea 34H]
          Length = 584

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/572 (31%), Positives = 281/572 (49%), Gaps = 29/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKI 95
            +P+I+ ++  +R +    +   L  ++  L  M D   L   DKA + +  A+ N  +I
Sbjct: 19  NLPEIIKQIYASRGM---ESAQELELNVAHLQGMVDETALMGMDKACQLLHDALVNKLRI 75

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           +I GD+D DGA S ALMM  LS  + N  +  +P+R   GYG  P +++    +  Q++I
Sbjct: 76  VIVGDFDADGATSTALMMTALSLFNSNNHDFIVPNRFEYGYGLTPEIVDIAAQQNTQMLI 135

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +    ++ A + G+ VIV DHH        A A+VNPN+         L   GV
Sbjct: 136 TVDNGISCIAGVKRAKDLGMQVIVTDHHLPGHSLPIADAIVNPNQHGCNFPSKALAGVGV 195

Query: 215 VFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            F +++ + +  R+ N          ++  LLDLVAL TV DVV L   NR  V +GL  
Sbjct: 196 AFYLMLALRKYCREQNYFSEQGIAEPNIAQLLDLVALGTVADVVSLDANNRILVEQGLKR 255

Query: 271 ARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            R     PG++ALIE  N +   + A + G+ +GP INA GR+ + + G   L++ D   
Sbjct: 256 IRAGKTRPGIQALIEIANKNQQRLVASDFGFALGPRINAAGRLDDMSYGINCLLATDLSS 315

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLA 387
             ++A +LD LN+ RR +E  M  +AE  + +   D     + I +    WH G++G++A
Sbjct: 316 ARVMAAELDDLNKTRREIEQGMQAEAEQVLTSLKFDEDNLPNAIALYQQDWHQGVIGIVA 375

Query: 388 ARLKEKFGRPSFAISFEEDG--------KGIGSGRSIEGFDIGKMVSF--AVEEGILVKG 437
            RLKEKF RP    +  +D         +  GS RSI G  I  ++    +    I++K 
Sbjct: 376 GRLKEKFHRPCIVFANGKDDDSVDVSEREIKGSARSIPGLHIRDLLEHIDSQHPDIILKF 435

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHAMAAGL+++  NF R    F + A   +       +   DG L    +++   + L 
Sbjct: 436 GGHAMAAGLSIKHGNFARFQQLFNELAGKWLKEEDLQSIILSDGELMLEHLSLDFAEKLR 495

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
            AGP+G   P P+F     KL   R+V   HL++  E Q  E    IAF V         
Sbjct: 496 DAGPWGQNFPEPLFDDT-FKLVQQRIVGEKHLKIVVEKQ-GEIFDGIAFNVDVKTWP--- 550

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             ++ K++H+   L VN +RG +  Q  V + 
Sbjct: 551 -NAQVKQVHLAYRLDVNEFRGKRTVQFMVENI 581


>gi|302389923|ref|YP_003825744.1| single-stranded-DNA-specific exonuclease RecJ [Thermosediminibacter
           oceani DSM 16646]
 gi|302200551|gb|ADL08121.1| single-stranded-DNA-specific exonuclease RecJ [Thermosediminibacter
           oceani DSM 16646]
          Length = 854

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/581 (30%), Positives = 281/581 (48%), Gaps = 29/581 (4%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL 73
            + W           A        +  ++ ++L +R +   +    FL  S+   M +P+
Sbjct: 5   NYVWELNPPVIPSFSAE------NLHPVILKLLKSRGIDRKEDVVRFLRASLED-MYNPM 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D DKA +R+ + +   EKI ++GDYDVDG     LM+R L     N + YIP R+ +
Sbjct: 58  LLKDMDKAVQRVKKGLAAGEKITVYGDYDVDGITGCCLMVRALREMGGNVDFYIPSRLDE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N   +EK   EG  LIITVD G  S+D ++YA   G+DVI+ DHH+       A A
Sbjct: 118 GYGLNKEALEKIAREGTTLIITVDNGIASHDEVRYAKELGVDVIITDHHEPHEVVPDAAA 177

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP + D      +L   GV F  +  +            +  LL  LDL AL T+ D+
Sbjct: 178 VINPKQKDCPYPFKNLAGVGVAFKFIQALA--------GSDDEILLKYLDLAALGTIADM 229

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VPL+  NR     GL   +    PGL AL+ +     + + AE + Y++ P +NA GR+ 
Sbjct: 230 VPLVDENRIIAKHGLNALKNTDKPGLSALMSQSRLDDAELNAEKISYILAPRLNAAGRLS 289

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++    +LL++DD++E   LAM L+ LN+ R+ +E+ +  +    V  +  D++   VIV
Sbjct: 290 DATTAVQLLLTDDTEEARELAMALEDLNRERQALENKIYNEVREYV-EKNIDLENVRVIV 348

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
               RWHPG++G++A++L + +  P   I+ E + +G GS RSI GF+I    +      
Sbjct: 349 ASSSRWHPGVIGIVASKLVQCYCMPCILIAEEGE-EGKGSARSIPGFNI--FEALDKLSY 405

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L K GGH  AAG T++    G       + A  I           ID  L +  +N+ L
Sbjct: 406 MLDKFGGHDQAAGFTIKVREIGTFRSKINELAREISREKWDIR-LNIDLELKSEDINMEL 464

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
            + L+   P+G GNP P+F   N  ++ +R V     HL++  + +  +   AI F +  
Sbjct: 465 AEQLKILEPFGFGNPKPLFICKNLSVERVRAVGEGEKHLKIFLKKR-RKEFSAIGFNLGA 523

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                         +    +L +N W G +  QL + D   
Sbjct: 524 YK----DKLEMAPFIDAAFYLELNEWEGVREPQLNLKDIKV 560


>gi|119470493|ref|ZP_01613196.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Alteromonadales bacterium TW-7]
 gi|119446194|gb|EAW27471.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Alteromonadales bacterium TW-7]
          Length = 573

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/563 (31%), Positives = 275/563 (48%), Gaps = 17/563 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R V        L+  +  L  D  +  D DKA+  +V A+     I+I
Sbjct: 19  HLHPVIKQIYATRRVVDAQE---LDNGVATLH-DYKLFKDIDKASALLVDALKAQSHILI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S A +M+ L      N +  IPDR   GYG +P+L E+ +     L+ITV
Sbjct: 75  VGDFDADGATSTATLMQGLQMFGFQNLDYLIPDRFSLGYGLSPALAEQIVQIKPDLVITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +    +    + GI V+V DHH    +   A A+VNPNR +       +   GV F
Sbjct: 135 DNGISCIAGIDILKSVGIKVLVTDHHLQGEQLPNADAIVNPNRHECNFPSKSIAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            +L+ +  ++R+          +L +LLD+VAL TV DVV L   NR  V +GL   R  
Sbjct: 195 YLLIALRSLMREQGYFTQQTPPNLANLLDIVALGTVADVVALDANNRTLVHQGLARIRSG 254

Query: 275 G-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG+ ALIE  N + + ++A + G+ + P +NA GR+ + +LG   L+S+D  +   +
Sbjct: 255 KTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSNDINQARRI 314

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD LN  RR +E  M  +A+A +      D      I +  D WH G++G+LA RLK
Sbjct: 315 ASELDSLNHARREIEQGMQAEAQAVLDRLAFTDDNIPDAICLFQDDWHQGVIGILAGRLK 374

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           EK+ RP+   +  E+G+  GS RSIEG  +  ++         ++ K GGHAMAAGL+++
Sbjct: 375 EKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTATPHLINKFGGHAMAAGLSID 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             NF      F       +       +   DG L +    +    +L+ +GP+G   P P
Sbjct: 435 EQNFNDFKKAFDAAVSAQLSEESKRCIVFTDGELPSDCFTMEFAQLLKQSGPWGQQFPEP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           VF     +L   R+V   HL++  + Q    + AIAF +      +    +  + + V  
Sbjct: 495 VFEHT-FELIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPD----TEARFVKVAY 549

Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592
            L +N +RG    QL V +   V
Sbjct: 550 QLDINEFRGKFSLQLIVRELEKV 572


>gi|310829083|ref|YP_003961440.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium limosum
           KIST612]
 gi|308740817|gb|ADO38477.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium limosum
           KIST612]
          Length = 690

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/579 (31%), Positives = 285/579 (49%), Gaps = 28/579 (4%)

Query: 18  WVSLLGQ--EGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           W     +    I     +T++  +  + AR+LV R     D A  +L P       DP  
Sbjct: 6   WKERKSKTEANIAAVEELTEECGLTPLSARLLVKRGYDTADKAMAYLEPDFSDFY-DPFG 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  KA  R+++A    EK+ I+GDYD DG  +V+++MR+     + A   IP+R+ +G
Sbjct: 65  LPDMQKAVDRLLKAREQGEKVCIYGDYDADGTTAVSILMRYFKGIGIEAFYRIPNRLEEG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E  I  GA LI++VD G  +++ + Y   QG+DVIV DHH+ + E   A A+
Sbjct: 125 YGMNIPALEAVIKMGATLIVSVDNGIAAHEQVDYCNEQGVDVIVTDHHECQGEVPRALAV 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+  R D       LC AG+   +++ + R+L  D+      DL   ++  A+ATV D+V
Sbjct: 185 VDAKREDSDYPFSELCGAGIALKMVMALDRVLELDS------DLQEYIECAAIATVADIV 238

Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           PL   NR     G+        N G++ALIE   +   + A N+G++I P INA GR+GE
Sbjct: 239 PLKSENRIIASLGIDYLNTSPVNLGIRALIEVSELKR-VNAGNIGFVIAPKINAAGRLGE 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     L ++ D  +   +A  L + N+ R+ +E  +LE A+A+V  Q  D Q   ++VV
Sbjct: 298 AGKVVELYMTQDEAQAAEIAAYLSMENRKRQDIEQEILELAKAQVEQQHLDEQG--IMVV 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            GD WHPG++G++A++L+E +  P   I  +E G G GS RS+EGF+I + +    E  +
Sbjct: 356 AGDGWHPGVIGIVASKLQETWYHPVVVIGIDEKGMGKGSCRSVEGFNIFEALQSCSE--L 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
               GGH  AAGL++   +  +  +    +A       + T     D V+    V+ AL 
Sbjct: 414 FTTFGGHEQAAGLSIPAEDIPQFAEKVNDYASEKGIDRLLTKTMYYDSVMGIGDVSEALA 473

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + L+   PYG GNP PVF     K Q  R +     HL  +         + + F +   
Sbjct: 474 EELDQFEPYGVGNPGPVFLMEGLKPQDARKMGSDKTHLMFSL-----PPYRCVGFGM--- 525

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             G  L      +  +     +N +R  K  QL + D  
Sbjct: 526 --GAALDDGTDGQFSILCKPEINCFRDKKSVQLLLKDIK 562


>gi|326334800|ref|ZP_08201005.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325693049|gb|EGD34983.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 574

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/583 (27%), Positives = 276/583 (47%), Gaps = 31/583 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDI-----VARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           W  L           ++Q      +     +A +L+ R + S   AK+F NPS+  L  +
Sbjct: 7   WDFLPI-PMQEEIETLSQTLFSSTLPWQKTIACLLLQRGIHSFKQAKEFFNPSLEQLH-N 64

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P ++ D D+A  RI+ AI + E I+I+GDYDVDG  SV+++  FLS    N + Y+PDR 
Sbjct: 65  PFVMKDMDRAVERILLAIKHKENILIYGDYDVDGTCSVSILYLFLSKVYPNVSTYVPDRY 124

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +   ++  ++    LIIT+DCG   ++ +QYA  +GI++I+ DHH        A
Sbjct: 125 KEGYGISFQGIDYAVDNDVSLIITLDCGIKGHEKVQYAKGKGIEMIITDHHTPAETLPKA 184

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP R D       LC  G+ F ++  + + L+  +  P        LDLVALAT  
Sbjct: 185 VAVLNPKRADCTYPYKELCGCGIGFKLIQALCKSLQLPSHTP-----YEFLDLVALATCA 239

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D+VP+ G NR  V  GL     Q +  +  L    ++  PI   +L ++  P INA GR+
Sbjct: 240 DIVPITGENRVLVYFGLRQINEQPSQVMTLL--LASVPPPIQVRDLVFVAAPRINAAGRM 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +      L  +        A  L+ LN  R+  +  + ++A  ++++     ++AS  
Sbjct: 298 AHAQKAVDFLTQN----ALEEASCLEFLNHKRKGADEQITQEALEQIVSN--HEEEASAT 351

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV    WH G++G++A+RL E + RP+   +   D     S RS++G+++ +        
Sbjct: 352 VVFSKDWHKGVIGIVASRLTETYYRPTIVFTQSGD-VLTASARSVKGYNLYEA--LCQCR 408

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             L++ GGH  AAG+T+   N+      FQ+     +P  +  P   +   +    + + 
Sbjct: 409 DYLLQFGGHTAAAGMTLLPENYLPFKKRFQEIVAQTLPEALRKPAITLSVEMPLKEITLP 468

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQD-SETLQAIAFRV 548
               L+   P+G  N  P+F       +++ ++     HL+MT       +  +A+ F +
Sbjct: 469 FYRCLQRFAPFGPKNMTPIFLAYEVIAKNVFLMGNEGSHLRMTLTDSSLRQEFEAVGFGL 528

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                    +  +G+   +   L  N W+G+   QL + D  P
Sbjct: 529 GHKK----SIVEKGQPFTIAYELSQNTWKGTTSLQLVIKDIMP 567


>gi|254829716|ref|ZP_05234371.1| hypothetical protein Lmon1_00105 [Listeria monocytogenes 10403S]
 gi|254898309|ref|ZP_05258233.1| hypothetical protein LmonJ_00800 [Listeria monocytogenes J0161]
 gi|254912199|ref|ZP_05262211.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes J2818]
 gi|254936527|ref|ZP_05268224.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes F6900]
 gi|258609121|gb|EEW21729.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes F6900]
 gi|293590172|gb|EFF98506.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes J2818]
          Length = 783

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   +A+ YIP+R  
Sbjct: 61  FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +++  GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +  + V++
Sbjct: 405 RDLMMAFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|229844831|ref|ZP_04464969.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           6P18H1]
 gi|229812212|gb|EEP47903.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           6P18H1]
          Length = 575

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/565 (29%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQKKIVIIG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  + +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMALEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R +  
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E++M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEASMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       +   DG LN++  N+    +++S G +G G P P F
Sbjct: 435 HFADFQHLFNQTIADWLDEEHLQGIIWTDGELNSNEFNLETAKLIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLDINEFRGNRSVQLLVDYIEPID 574


>gi|227112635|ref|ZP_03826291.1| ssDNA exonuclease RecJ [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 584

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 183/573 (31%), Positives = 278/573 (48%), Gaps = 29/573 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V        L   +  L+ +  +L+  DKA   + QA+     I+I 
Sbjct: 20  VPPLLRRLYAQRGVKGAQE---LERGLSGLL-NYRLLSGIDKAIDLLQQALAEKRCIVIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     VN    +P+R  +GYG +P ++ +    GA+LI+TVD
Sbjct: 76  GDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVVLQAEKLGAKLIVTVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A++NPN  D       L   GV F 
Sbjct: 136 NGISSHAGVEDAHRRGITVLVTDHHLPGEILPDADAMINPNLPDCQFPSKALAGVGVAFY 195

Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           +++ ++  LR  N               +L  LLDLVAL TV DVVPL   NR  V +GL
Sbjct: 196 LMMALFVRLRDSNWFTQPLFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 255

Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R     PG++AL+E  N   S + A +LG+ +GP +NA GR+ +  +G  LL+S+D 
Sbjct: 256 NRIRAGECRPGIRALLEVANRDASQLVASDLGFALGPRLNAAGRLDDMTVGVELLLSNDI 315

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385
            +  MLA  LD LNQ+RR +E  M  +A     + +    +    + +    WH G+VG+
Sbjct: 316 TQARMLANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGI 375

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443
           LA+R+KE+F RP  A +   DG   GSGRSI G  +   +        G++ K GGHAMA
Sbjct: 376 LASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMA 435

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502
           AGL++    F      F +     +       V   DG L    ++ ++  +ML  AGP+
Sbjct: 436 AGLSLHEDRFEDFRQRFGELVGEWLDPSQLEGVVWSDGELVLPELDLLSTAEMLRYAGPW 495

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558
           G   P P F     ++   R++   HL+  FE   +      L  IAF +  +   +   
Sbjct: 496 GQAFPEPTFDGC-FRILQPRLLKERHLKAMFEPIGATGQVPLLDGIAFNIDTSIWPD--- 551

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               K + +   L +N +RG +  QL +    P
Sbjct: 552 -PSIKEVEMVYRLDINEFRGKRSVQLMIQHLWP 583


>gi|258648096|ref|ZP_05735565.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella tannerae
           ATCC 51259]
 gi|260851963|gb|EEX71832.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella tannerae
           ATCC 51259]
          Length = 572

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/585 (28%), Positives = 276/585 (47%), Gaps = 22/585 (3%)

Query: 16  FRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
           ++W       E    A  + ++  +  ++ ++L++R +      K F  P +  L  DP 
Sbjct: 3   YKWNLKETAPEQAAEAARLAKEAGVHPVLGKLLLDRGLHDPQEVKRFFRPQLTELH-DPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D   A  R+ +A+  +E++M++GDYDVDG  +VAL+ RFL     N + YIPDR  +
Sbjct: 62  LMDDMQAAVDRLNRAMLQNERVMVYGDYDVDGCTAVALVFRFLRQYYSNLDTYIPDRYKE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG + + ++     G +L+I +DCG  + + + YA + GID I+ DHH    E  PA A
Sbjct: 122 GYGISRAGVDYAAETGVRLVIVLDCGIKAVEEIAYARSLGIDFIICDHHVPGIELPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R D+     HL   GV F  +         +        L+ LLDL A++   D+
Sbjct: 182 ILNPKRQDNHYPYAHLSGCGVGFKFMQAFAISNGIE-----FNKLVPLLDLCAVSIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VP++G NR     GL       + GL+A+IE        +T  ++ + IGP INA GRI 
Sbjct: 237 VPIMGENRILAWHGLRCLNTNPSIGLQAIIEVCGLTEHELTMNDIIFKIGPRINASGRIQ 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                 RLL+  D      +A K+++ N+ R+ ++  M EQAE  V     D++Q   IV
Sbjct: 297 NGKEAVRLLVERDYTTALEMAGKINLYNEARKDIDKQMTEQAEDLV-RHLPDLEQRRAIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    WH G++G++A+RL E++ RP+  ++  E G   GS RS+ GFD+ K V+      
Sbjct: 356 VYNKEWHKGVIGIVASRLTEQYYRPAVVLTESE-GVATGSARSVSGFDVYKAVADC--SD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGH  AAGL+++  N     + F+ +    +    T     ID VL+   +N   
Sbjct: 413 LLENFGGHTYAAGLSLKVENVAAFTERFEAYVEKHILDEQTQASLDIDAVLDFKDINFGF 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV---NLAHLQMTFES-QDSETLQAIAFRV 548
              L    P+G  N  P+F   +        V      H+++     + +  +  IAF  
Sbjct: 473 YKQLRRFSPFGPDNVKPLFCTKHVYDYGTSKVVGRGQEHIKLELVDNKSNNIMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                         +   +   +  N  +     QL++ D  P E
Sbjct: 533 S----SRARYIKTKRAFDICYAIEENSHK-RGDVQLQIEDIRPCE 572


>gi|209694157|ref|YP_002262085.1| ssDNA exonuclease RecJ [Aliivibrio salmonicida LFI1238]
 gi|208008108|emb|CAQ78249.1| single-stranded-DNA-specific exonuclease RecJ [Aliivibrio
           salmonicida LFI1238]
          Length = 579

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/571 (31%), Positives = 288/571 (50%), Gaps = 25/571 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+   R ++     + L    + L+     +   +KA   +V+AI    +I++
Sbjct: 18  SIPSILQRIYATRGITS---NNQLERGAKHLL-SFQSMHGIEKAVDILVEAIAKQTRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+DVDGA S AL +        N  +  +P+R  DGYG +P ++++    GA++I+TV
Sbjct: 74  VGDFDVDGATSSALSVMAFRMMGSNNVDYLVPNRFEDGYGLSPDVVDQAKAMGAEIIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH   S    A ++VNPN  +       L   GV F
Sbjct: 134 DNGVSSIDGVAAAKAYGMQVVVTDHHLPGSSLPIADSIVNPNLEECAFPSKSLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ I   LR++N          +L  LLDLVAL TV D+V L   NR  V +G+   R
Sbjct: 194 YLMLAIRARLRENNWFETQNIPIPNLADLLDLVALGTVADLVALDENNRILVHQGIQRIR 253

Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++ALIE  N   S I A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKCRPGIQALIEVANKVPSRINASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLE--QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M E   A  + L      +    +V+    WH G++G+LA+
Sbjct: 314 RMASELDALNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           RLKEK+ RP  A +   DG   GS RSI GF +   +        G+++K GGHAMAAGL
Sbjct: 374 RLKEKYHRPVIAFADGGDGLIKGSCRSISGFHMRDALDLIDTRNPGLILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           +++ V++ R    F       V     T V   DG L      +   ++L + GP+G   
Sbjct: 434 SIKEVDYKRFSQAFDDVVRESVEEEALTGVVLSDGELMPEEFTLGTAEILRAGGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+ + R+V   HL++  E        ++ + AIAF +      +    + 
Sbjct: 494 PEPIFDGE-FKVLNQRLVGEKHLKLMLEPIHKDFPTNKMIDAIAFNIDVRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +++ +   L +N +RG++  QL V    P+
Sbjct: 549 VQKVKLAYRLDINEFRGNQTLQLMVDYIEPI 579


>gi|257884694|ref|ZP_05664347.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,501]
 gi|261207763|ref|ZP_05922448.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TC 6]
 gi|257820532|gb|EEV47680.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,501]
 gi|260078146|gb|EEW65852.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           TC 6]
          Length = 744

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/563 (30%), Positives = 272/563 (48%), Gaps = 30/563 (5%)

Query: 33  ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++  +   V ++L  R    +     FL+P  + L  DP ++ D DKA  RI +A+ +
Sbjct: 1   MIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPYLMHDMDKAISRIQEAVIS 59

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI+++GDYD DG  S  +M   L        +++P+R   GYGPN S+ ++ I EG Q
Sbjct: 60  GEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEHGYGPNQSVYQEKIEEGIQ 119

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           LIITVD G    DA+ YA   G+DVI+ DHH++      AYA+V+P           L  
Sbjct: 120 LIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYAIVHPRHPAGHYPFPDLAG 179

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
            GV F V   +                   LDLVA+ T+ D+V L   NR  V  G+   
Sbjct: 180 VGVAFKVASALLEE-----------PPAEFLDLVAIGTIADLVSLTDENRILVSLGIDAI 228

Query: 272 RRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                 GL+AL E   +      E  +G+ I P +NA GR+G+      LL + D +E  
Sbjct: 229 HHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEAS 288

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           + A KL+ +N+ R+ +   + ++A A V  +        + ++    WH G++G++A ++
Sbjct: 289 VQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHLLVNRGWHEGVLGIVAGKI 342

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             + G+P+  ++ +EDG   GSGRSIE  ++           +    GGH  A GLT+  
Sbjct: 343 MNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRDLFTYFGGHHAAVGLTMPS 400

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N   L +   ++  +    L+  P  +ID VL  + V +  ID L+   P+G  NP P 
Sbjct: 401 ENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQ 460

Query: 511 FAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F F   + ++I+ +     HL+       S+ L A+AF  +GT   E L      ++ V 
Sbjct: 461 FLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FGTQEEELLNN----QVDVV 514

Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591
           G L +N W G K+ QL V D S 
Sbjct: 515 GKLSINEWNGRKKPQLMVSDFSV 537


>gi|307565810|ref|ZP_07628271.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella amnii
           CRIS 21A-A]
 gi|307345434|gb|EFN90810.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella amnii
           CRIS 21A-A]
          Length = 574

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/587 (27%), Positives = 282/587 (48%), Gaps = 22/587 (3%)

Query: 16  FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W      Q+    A  + +K ++  +++ +L+ R ++ +  AK F +P +  L+ +P 
Sbjct: 3   FKWKYIPPTQQEEIAAKELGEKLSMSPVLSLILIRRGITTESAAKRFFHPQLSDLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+ + E+I+++GDYDVDG  SVAL+ +FL     N + YIP+R  +
Sbjct: 62  LMKDMDLAVDRLNDAMGHKERILVYGDYDVDGCTSVALVYKFLRQYYSNIDYYIPNRYNE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   +      G +LII +DCG  + + + YA   GID I+ DHH    +  PA A
Sbjct: 122 GYGVSKKGISFAKETGVKLIIILDCGIKALEEIAYAKELGIDFIICDHHVPDEKMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD  A++   D+
Sbjct: 182 ILNPKRKDDTYPFKHLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIASDL 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP+I  NR     GL    +  + GLKA+I+   +S   +   ++ + IGP INA GR+ 
Sbjct: 237 VPVIDENRILAYHGLRQLNKNPSLGLKAIIDTCGLSGRELEMSDIIFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D  E    A  +D  N+ R+ ++  M E+A  K++ + ++ +  S I 
Sbjct: 297 TGKESVDLLVERDFAEAVKAAKHIDEYNEQRKGVDRQMTEEA-NKIVERLENQKHQSSIF 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  GIVG++A+RL E + RP+  ++ + +    GS RS+ GFDI + +       
Sbjct: 356 LYDEHWKKGIVGIVASRLTEIYFRPTIVLTKDGE-YATGSARSVAGFDIYEAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+  GGH  AAG+T++           Q F    +      P+  +D +++   +   +
Sbjct: 413 LLINFGGHTYAAGVTLKWSKVKEFRKRLQLFVEKHIQPHQQEPILNVDAIIDFKDITKKM 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548
            + L+   P+G  N  P+F+        + +VV     H+++     + +  +  IAF  
Sbjct: 473 HNDLKRFSPFGPNNSKPIFSTEKVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                         +   +   +  N ++ +   QL++ D    E  
Sbjct: 533 S----AAARYIKSKRSFDIAFTIEDNIFKHNL-VQLQIEDIRQTENE 574


>gi|227524131|ref|ZP_03954180.1| exonuclease RecJ [Lactobacillus hilgardii ATCC 8290]
 gi|227088709|gb|EEI24021.1| exonuclease RecJ [Lactobacillus hilgardii ATCC 8290]
          Length = 776

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/585 (32%), Positives = 283/585 (48%), Gaps = 28/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S F+W          +  A+++   I  ++A +L+ R VS + A +DFL PS +    DP
Sbjct: 4   SKFKWQIK-QNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  K   RI  A+ N E+I ++GDYD DG  S  +M   L+    N + YIP+R  
Sbjct: 62  YLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRFS 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    +K IN G  LIITVD G    +A+  A +   DV+V DHH +      AY
Sbjct: 122 DGYGPNVDAFKKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAY 181

Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           A+++P   N+       G L  AGV   V   +   L  D           L+D+ A+ T
Sbjct: 182 AIIHPRVKNQEGQAYPFGDLSGAGVALKVAQALMEDLPID-----------LIDVAAIGT 230

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308
           V D+V L   NRA V  GL   R    PGL ALI+  +I  S    +++G+ I P +N+ 
Sbjct: 231 VADIVSLKDENRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSL 290

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRI ++N+G  LL + D Q+   LA   D  N +R+ +     +QA   V +   D +  
Sbjct: 291 GRIDDANIGVELLSTFDDQKATELAEFADHQNDSRKSLVDEFYQQAVQMVES-SGDAENR 349

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427
           S +VV GD WH G++G++A++L EK+GRP+  ++    + +  GSGRS+E FD+    + 
Sbjct: 350 STLVVVGDDWHQGVLGIVASKLVEKYGRPTIVLTSQHGNDQVKGSGRSVESFDL--FSAI 407

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  +  GGH  A GLT+ +     L D  +K A N    L   P   I   ++A  
Sbjct: 408 DPIRDQTIGFGGHHSAIGLTINKDKISVLKDQLEKAAGNQELDLSQKPTLDIAAKISADQ 467

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545
           ++   I  L    P+G  NP PVF     +L  ++ +     HL+ +   ++   L A+A
Sbjct: 468 IDNQFIKNLNVLAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLV-KNKSRLTAVA 526

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           F   G       + +    + V+G +  N W      QL V D  
Sbjct: 527 F---GRGAAAGQLSNGSASIKVSGEINENTWNNHTTIQLMVSDLK 568


>gi|119775869|ref|YP_928609.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           amazonensis SB2B]
 gi|119768369|gb|ABM00940.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           amazonensis SB2B]
          Length = 574

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/563 (30%), Positives = 284/563 (50%), Gaps = 21/563 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++L  R V+ D  +  L+  +R     P  +   D+AA  +  A   S++++I
Sbjct: 19  HLHPLIKQLLARRGVAGDDCEQELSRLLR-----PETMLGLDRAACLLADAAMASKRMLI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ +  L    ++ A+  IP+R   GYG +  L+   + +GA+++ITV
Sbjct: 74  VGDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALAVEKGAEVLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V++ DHH        A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR+            +L  L+D+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNRILVDAGLKRVR 253

Query: 273 R-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+ AL+E    +     A + G+ +GP +NA GR+ E +LG   L+ DD     
Sbjct: 254 AGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLGVETLLCDDIMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E+ M  +A   +   Q ++ Q    I +  D WH G++G+LA+R
Sbjct: 314 RMAAELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQDDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   D +  GS RSI+G  +  ++    +   G++ K GGHAMAAGL+
Sbjct: 374 IKDKYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGLIPKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           + + +  +    F      ++   + T     DG L    + +   +++ ++GP+G G  
Sbjct: 434 LAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANLIRASGPWGQGFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + +L   R+V   HL+M  E++     L AIAF V      +  +    + +H
Sbjct: 494 EPLFDG-HFRLLQQRLVGEKHLKMMVETECGRLMLDAIAFNVDLKLWPDATV----RHVH 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDA 589
           +   L VN +RG++  QL V   
Sbjct: 549 LAYRLDVNEFRGNQSLQLLVEQI 571


>gi|323340873|ref|ZP_08081124.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           ruminis ATCC 25644]
 gi|323091724|gb|EFZ34345.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           ruminis ATCC 25644]
          Length = 772

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/584 (30%), Positives = 291/584 (49%), Gaps = 28/584 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S + W     Q   ++   + +   + ++VA +L+NR     + A++FL P    L  DP
Sbjct: 4   SRYEWK-KGPQTDQDQTKKLAEALNLSELVAEILINRGYDTKEKAENFLKPGPENLY-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  K   RI  AI   +KI ++GDYD DG  S ++M   L+      + YIP+R  
Sbjct: 62  YLMHDMKKGTDRIRTAIVEGQKITVYGDYDADGLTSTSIMYEALTQLGAECDYYIPNRFD 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  + ++ I+ G QLI+TVD G   ++A+++A  QG+DV++ DHH++  E   AY
Sbjct: 122 DGYGPNKDVYKRLIDNGTQLIVTVDNGVAGHEAIEFAKEQGVDVVITDHHELPQELPDAY 181

Query: 193 ALVNPNRL--DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A+++P     D     G L  AGV F     +   + Q+            LDL A+ TV
Sbjct: 182 AIIHPKIPNDDGDYPFGGLSGAGVAFKAATALLEEIPQEA-----------LDLCAIGTV 230

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGG 309
            D+VPL+  NR  V  GL   R     GL AL E   +    +  E +G+ I P++NA G
Sbjct: 231 ADLVPLVDENRVLVKYGLEALRSTERIGLLALYEECGLKQDEVDEETIGFGIAPNLNALG 290

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           RI ++ +G  LL + D Q    +A  +   N  R+ +   +  QA+  +  +    +   
Sbjct: 291 RISDATVGVELLTTMDEQRASEIAKNVLQQNIERQNLVKDITAQAQDLLNEES---KNHL 347

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFA 428
           V +V G++WH G++G++A+RL E  G+P+  +    + G   GSGRS+E F++    +  
Sbjct: 348 VNLVWGEKWHEGVLGIVASRLVESTGKPTIILGINRDSGLAKGSGRSVEAFNL--FDALD 405

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
               +L K GGH MA GLTV      +L +   + A N         V  +DG ++ S +
Sbjct: 406 GHRDLLEKFGGHHMACGLTVSADELPKLQEILDQEAKNQNLESAAKQVKILDGDIDLSEI 465

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSE-TLQAIAF 546
           N  +I  L   GP+G  NP PVF++  + ++  + +    HL++   + +    + A+ F
Sbjct: 466 NPEMIQELSVIGPFGTNNPKPVFSYRGYVVEDAKPMGNGNHLRLNLLNDERTVKVAAVCF 525

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            V G  + EFL     + +   G L +N W+  +  Q+ + D  
Sbjct: 526 GV-GNKIAEFLAN--PEAIKFIGSLSINVWQNQRYPQIMIEDLK 566


>gi|257464738|ref|ZP_05629109.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor
           202]
 gi|257450398|gb|EEV24441.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor
           202]
          Length = 571

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/558 (31%), Positives = 270/558 (48%), Gaps = 19/558 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  +R V    +   L  +++ L   P  L+  D+A   +V+A      I+I G
Sbjct: 19  HPLLNRLYQSRGV---QSTKELERTLQHLHH-PQQLSGIDQATDLLVEAYEQQANIIIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L           IPDR   GYG +  +    + +   L+ITVD 
Sbjct: 75  DFDADGATSTALTLLALRQLGFQHVEYLIPDRFSQGYGLSLDIANMILEKEVDLVITVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ +      GI V+V DHH    +   A A+VNPN          L   GV F V
Sbjct: 135 GISSFEGIALLKENGIKVLVTDHHLPAEQLPNADAMVNPNLSYCPFPSKSLAGVGVAFYV 194

Query: 219 LVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GN 276
           ++ +   +R+ N       +L  LLDLVAL TV DVVPL   NR  V +GL   R     
Sbjct: 195 MLALRSKMREKNLFQGKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLNRIRSGACR 254

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            G+KAL+E        + A +LG+ I P +NA GR+   +LG  LL +D+      LA +
Sbjct: 255 VGIKALVEVGKRDLETLQAADLGFAIAPRLNAAGRLENMSLGVELLTADNMDIARQLAFE 314

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           LD LNQ R+  E  M  +A A           +QA  IV+    WH G++G+LA+R+K++
Sbjct: 315 LDSLNQTRKEFEQEMKTEALAICAKLPSLAQKEQAHGIVLYQPDWHQGVIGILASRIKDQ 374

Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
           F RP  A + E +      GS RSI G  +  ++    +    ++VK GGHAMAAGLT+ 
Sbjct: 375 FHRPVIAFAQENEDSPFIKGSARSINGLHMRDLLERIDSHYPELIVKFGGHAMAAGLTIH 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           + NF +    F +    ++   +   +   DG L A    + +  +L+ AGP+G   P P
Sbjct: 435 QDNFLKFQKIFDEKIDEMIAPELLQGIIYTDGELQADEFTLEIASLLQQAGPWGQHFPEP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F   N ++   R++   HL+M  E++    L AI F +      +       K+  +  
Sbjct: 495 TFEG-NFRILQQRLLGGKHLKMMLENEKGTLLDAIWFNIDLRSFPDM----SVKKAKIIY 549

Query: 570 HLCVNYWRGSKRCQLRVL 587
            L +N ++G+K  QLRV 
Sbjct: 550 KLDINEYKGNKNLQLRVE 567


>gi|157960635|ref|YP_001500669.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella pealeana
           ATCC 700345]
 gi|157845635|gb|ABV86134.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella pealeana
           ATCC 700345]
          Length = 574

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/564 (30%), Positives = 273/564 (48%), Gaps = 21/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              I+ ++  +R VS    +  L   +R     P  +   ++AA+ +  AI   E I+I 
Sbjct: 20  FSPILKQIYASRGVSASDCELSLAKLLR-----PNTMAGLEQAAKIVADAIEAQEAILIM 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S ++ +  L        +  IP+R   GYG +  ++    ++ A+L+ITVD
Sbjct: 75  GDFDADGATSTSVCVLALRMMGAQKVDYLIPNRFDYGYGLSSEIVAVAASKNAELLITVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +  A   G+ V++ DHH        A A+VNPN+         +   GV F 
Sbjct: 135 NGISSIEGVAAAKACGMTVVITDHHLPGHTLPDADAIVNPNQDGCGFASKSIAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-AR 272
           ++  +   LR  N   L      +L  LLD+VAL TV DVV L   NR  V  GL     
Sbjct: 195 LMSALRAELRSRNWYQLQNIAEPNLAQLLDIVALGTVADVVSLDTNNRILVEAGLQRVKA 254

Query: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ DD      
Sbjct: 255 GRCRVGITALLEIAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDIMLARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E+ M ++A   + + + ++ +    I +    WH G++G+LA+R+
Sbjct: 315 MASELDGLNAERRDLEADMQQEALKSLESIELNEAELPWGIAIFQADWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL++
Sbjct: 375 KDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINTRHPGLILKFGGHAMAAGLSI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +   F +  D + K    ++   + T     DG L      + L   L +AGP+G     
Sbjct: 435 QAGQFAQFADAYDKAVREVLAPELLTGELVSDGELVPEQFKLELASELRAAGPWGQSFTE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     ++   R+V   HL++  E++     L AIAF V      +  +Q       V
Sbjct: 495 PLFDGY-FRVIQQRIVGEKHLKLILETECGRVMLDAIAFNVDLKTWPDATIQYA----QV 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG++  QL V    P
Sbjct: 550 VYKLDVNEFRGNESLQLMVEQIEP 573


>gi|209544632|ref|YP_002276861.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532309|gb|ACI52246.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 619

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 222/596 (37%), Positives = 314/596 (52%), Gaps = 12/596 (2%)

Query: 6   FLGVECSISGFRWVSLLG---QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
            LGV  S+ G RW+         G    L I Q+  + DIV ++L  R +    A  FL+
Sbjct: 28  VLGVAASLGGRRWLWRDPVLADAGGRVGLMIAQQAGVSDIVGQMLAARGLDGRSAATFLD 87

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R LMPDP  L D D AA R+  A+   E + +FGDYDVDGA + AL+ + L      
Sbjct: 88  PTLRALMPDPSALRDMDPAAERLADAVRRGETVAVFGDYDVDGACAAALVTQLLRDLGCP 147

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
              ++PDR+ +GYGPN   +E     GA L++ VDCG+ + D L     +  D+IV+DHH
Sbjct: 148 VLTHVPDRMTEGYGPNAPALEALAARGATLVVCVDCGTAAGDILAGLAGR-ADIIVLDHH 206

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240
           + +    P  A VNPNRLD  SGQ  LCAAGV FL  V   R LR+          DL++
Sbjct: 207 KAEGPPPPVLATVNPNRLDCTSGQRGLCAAGVAFLAAVATVRTLRRAGWFAARPEPDLMA 266

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LD+VALATVCDV+PL  LNRA V +GL +  R+   GL AL+E      P++A   G+ 
Sbjct: 267 FLDIVALATVCDVMPLTDLNRALVTQGLKILARRQRTGLDALLEVAGARDPLSAFTCGFA 326

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGRI ES LG  LL+ DD+ E   LA +LD +N+ R+ +E+ +L++A  +  +
Sbjct: 327 LGPRINAGGRIAESGLGLDLLLCDDAAEARRLAERLDAVNRRRQTVETTILDRAMDEAAS 386

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           Q        V+++ G  WHPG+VG++A R+KE+F RP    +  EDG   GS RS+   D
Sbjct: 387 QRAA--GRGVLLLSGRDWHPGVVGIVAGRIKERFNRPVLVGAELEDGTVKGSSRSVADLD 444

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +  A + G+L  GGGHAMAAG ++ R     L DF +        AL       I+
Sbjct: 445 LGAAIIAARQAGLLTTGGGHAMAAGFSLPREGVPALHDFLEARLAGA-TALPDATDVLIE 503

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537
           GV++ +     L   +    P+GAGN  P+ A P  ++     +      L++  E    
Sbjct: 504 GVVHVAGATTELATDIGRLAPFGAGNDEPILAIPRVRVVRADRIGREGNTLRVLVEGEGG 563

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              L+A+ FR    P    L       +H+ G L    W G       + DA+   
Sbjct: 564 GPRLKALLFRADDHPATPILEDRNAPPLHLAGWLRAESWNGRVSAGFFIRDAAIAT 619


>gi|116333979|ref|YP_795506.1| single-stranded DNA-specific exonuclease [Lactobacillus brevis ATCC
           367]
 gi|116099326|gb|ABJ64475.1| exonuclease RecJ [Lactobacillus brevis ATCC 367]
          Length = 773

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 183/587 (31%), Positives = 279/587 (47%), Gaps = 27/587 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W             A+     I  IVA++L NR   +   A DFLNP    L  DP +
Sbjct: 6   YHWNIKHVDRPSAEVQALATAADISPIVAQILWNRGYQTAPAAHDFLNPGPEQLH-DPSL 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DK   RI  AI   ++I I+GDYD DG  S A++   L+      N YIP+R  DG
Sbjct: 65  LNDMDKGIERIETAIGEEQQITIYGDYDADGVTSTAILYETLNEMGAKVNYYIPNRFSDG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN +  EK I  G QL +TVD G    +A+  A   G+DV+V DHH++  E   AYA+
Sbjct: 125 YGPNVAAFEKLIAAGTQLFVTVDNGVAGNEAIAAAKKAGVDVVVTDHHELPEELPDAYAI 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P         G L  AGV F V   +   + QD           LLDL A+ TV D+V
Sbjct: 185 IHPRYPGAEYPFGGLSGAGVAFKVAQALREEIPQD-----------LLDLAAIGTVADLV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL+  NR  V  GL + ++   PGL AL++   I    +T +++G+ I P +NA GR+ +
Sbjct: 234 PLVDENRVLVYFGLQLLKQDERPGLLALMQTAGIKSDDLTEQSIGFGIAPRLNALGRLDD 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++    LL + D  + E LA   +  N+ R+ +  ++   A  + +    D Q  + +V+
Sbjct: 294 ASPAVELLTTVDEAKAEELAKMTEQKNRQRQELVQSISTAALQQAVD--ADHQDRATLVI 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++A+++ E  G+P+  ++ +  G+  GSGRS+E F++    +      +
Sbjct: 352 SGHDWHEGVLGIVASKVVEATGKPTLVLNIQ-AGRAKGSGRSVEAFNL--FAALDGHRDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           +   GGH MA GLTV       L D     A     A        +   L  +AV  +L 
Sbjct: 409 MTAFGGHHMAVGLTVPEDQLTALADALDDEAQTQALAQSGPSELPVAATLPVAAVTPSLY 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTP 552
             L    P+G  N  P+FAF +  +  ++V+   H  + F+ Q+ +  L AI F      
Sbjct: 469 QELAQLAPFGTDNLQPLFAFESATVTQVKVIGKDHSHLKFQLQEGQHQLNAIQFGAAKYV 528

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS----PVEGH 595
                + +      V G +  N W+G    Q+ V D      PV+  
Sbjct: 529 DD---LTAAPDDAAVLGTIEDNVWQGRHSLQVMVKDLKTSVTPVQDQ 572


>gi|254852149|ref|ZP_05241497.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL R2-503]
 gi|258605452|gb|EEW18060.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL R2-503]
          Length = 715

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + +++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADISV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|300764808|ref|ZP_07074798.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL N1-017]
 gi|300514484|gb|EFK41541.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL N1-017]
          Length = 783

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + +++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADISV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|259503101|ref|ZP_05746003.1| recombination protein J [Lactobacillus antri DSM 16041]
 gi|259168967|gb|EEW53462.1| recombination protein J [Lactobacillus antri DSM 16041]
          Length = 772

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/582 (28%), Positives = 279/582 (47%), Gaps = 28/582 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
           + W     +       A+ ++ +I + +A +L  R ++   A +DFL PS+  +  DP +
Sbjct: 6   YNWQDQSAKVDQQVVQALQKELSISETLATLLAERGITDAQAAEDFLKPSLAAIH-DPRL 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI  A+ N EKI ++GDYD DG  S A+M   L+    + + Y+PDR  DG
Sbjct: 65  LHDMDKAVERIQTAVANGEKITVYGDYDADGITSTAVMYEALNGIGADVDYYVPDRFKDG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN    E+ I  G +LI+TVD G +    ++ A  QG+DVI+ DHH++ +E   A A+
Sbjct: 125 YGPNQDAYERIIASGTKLIVTVDNGVSGKQVVESAIAQGVDVIITDHHELPAELPQATAI 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P           L   GV F ++  +     +            +LDL+A+  + DVV
Sbjct: 185 VHPRYPGSDYPFPDLSGVGVAFKLVWALQEEFPE-----------EMLDLLAIGEIADVV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            +   NRA +  G+   R+   PGL AL+    ++   +T + +G+ I P +NA GR+  
Sbjct: 234 SVTDENRALISLGIQELRQGMRPGLHALVNLAGVNEGQLTDQEIGFTIAPRLNALGRVTN 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N G  LL + D      LA +++  NQ RR +   ++E A  + ++     Q+  V+V+
Sbjct: 294 ANAGVELLTTLDESRGRKLAEQVEAANQERRQLVDQIMEAASKQAVS--PANQKRPVLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEG 432
            G  WH G++G++A+R+ ++ G+P+      +  +    SGRS+ GFD+    +      
Sbjct: 352 AGHNWHQGVLGIVASRIMDETGKPTIVAGINDGEEVAKASGRSVPGFDL--FRALDGHRD 409

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GL++     G L +     A +            I   L A  V   L
Sbjct: 410 LFTAFGGHPAACGLSLPEDQLGPLQEALVAEAADQGFTGKQKQPLAIAAKLAAGDVTEQL 469

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
              L+  GP+G GNP PVF   + +  +++ +     HL+     Q    L  +AF    
Sbjct: 470 YQQLQQLGPFGPGNPQPVFLLRDVQPTNVKTMGKDNSHLKFNLSPQ----LAVVAFNQGK 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 L+  +G  + +   + +N W+G ++ QL + D    
Sbjct: 526 LA---PLLSGQGMTVDIVAKISINEWQGKRQVQLLLEDLQIA 564


>gi|284053195|ref|ZP_06383405.1| exonuclease RecJ [Arthrospira platensis str. Paraca]
          Length = 686

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/612 (27%), Positives = 288/612 (47%), Gaps = 35/612 (5%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKD 59
           M DQ  +  E  +   RW      E    A ++++   +  I+A++L+NR + + + A+ 
Sbjct: 1   MEDQPTITTEALLPKQRWHIFP--ERPEIAQSLSETTGVHPIIAQILINRGIETTEQAEA 58

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FLNP  + L        D  K  + +  AI N +KI I GDYD DG  S AL++R LS  
Sbjct: 59  FLNPQSQTLPEPMEEFPDLPKTLQLLQNAIENQQKIAICGDYDADGMTSTALLIRALSQL 118

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
             +    IP R+ +GYG N  ++E+F  +G  +IITVD G ++   +  A   G+ VI+ 
Sbjct: 119 GADITSAIPSRMQEGYGINNRIVEEFHEQGISIIITVDNGISAVGPVARAKELGLTVIIT 178

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
           DHH +  +   A A++NP  L  +S    L   GV +++ + + ++  + + +       
Sbjct: 179 DHHDLPPKLPNADAILNPKLLPKISPYYGLAGVGVAYILALSLAKLRGEVDSLRW----- 233

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL----------IERVNIS 289
            LL+L  L T+ D+ PL G+NR ++ +GL +  +   PG++AL              N +
Sbjct: 234 QLLELFTLGTIADMAPLNGVNRRWIKRGLKILPQSKIPGVQALIQIAGLANQQPNLNNST 293

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
           +P+  E++G+ +GP INA GRIG   +   LL +D        A + +  N  R+ + + 
Sbjct: 294 TPMKPEDIGFRLGPRINAIGRIGNPQVVIELLTTDHMGTALEQAKECEETNLLRKELCAD 353

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           + ++A         +++Q  V+V     WH G++G++A+RL E++G P F  ++E++   
Sbjct: 354 IEQEAIDWYENSNINLEQERVLVPCQKNWHHGVIGIVASRLVERYGVPVFICTYEDEENL 413

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GS R I  F + + + F   + IL K GGH  A G ++   N  +      +FAH  + 
Sbjct: 414 RGSARGIPEFHVFEALQFC--QDILGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQ 471

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529
                P+  +D  +N   +N  L D ++   P G  N  PVF  P  ++   ++V  +H+
Sbjct: 472 VEHLRPLVNVDVRINLMDINYKLYDQIDKIQPCGIENSEPVFWTPKLRVLHQKIVGKSHI 531

Query: 530 QMTFESQD--------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           ++T               T+ AIA+R                 +     L  N W     
Sbjct: 532 KLTLSQDLPPEITMAVLPTISAIAWRWADYF-------PLPSPLDFAYKLRKNTWNNQTA 584

Query: 582 CQLRVLDASPVE 593
            +L ++     E
Sbjct: 585 IELEIVGVRLPE 596


>gi|331701141|ref|YP_004398100.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128484|gb|AEB73037.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           buchneri NRRL B-30929]
          Length = 776

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/585 (30%), Positives = 276/585 (47%), Gaps = 28/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W         +    + +   I   +A++L+ R ++     +DFLNPS+     DP
Sbjct: 4   SKYKWQL-DQPADSSVVDKLAKDANIDPFIAKMLIQRGITSADVVEDFLNPSVSAFH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  K   RI QA+ N E I ++GDYD DG  S  +M   LS    + + YIP+R  
Sbjct: 62  FLMHDMHKGIERIQQAVENGEHITVYGDYDADGITSTTVMYETLSDLGADVDYYIPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +K I +G  LI+TVD G     A+  A     DV+V DHH +  +   AY
Sbjct: 122 EGYGPNVEAFQKIIQKGTSLIVTVDNGVAGNQAIAAANELHCDVVVTDHHSLPEKLPDAY 181

Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           A+++P   N   D    G LC AGV F V   +           ++     L+D+ A+ T
Sbjct: 182 AIIHPRVKNENGDAYPFGDLCGAGVAFKVAQAL-----------MDEVPSDLIDITAIGT 230

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308
           V DVV L   NRA V  G+        PGL ALI+   I     + E++G+ I P +N+ 
Sbjct: 231 VADVVSLRDENRAIVKFGVQAISNSQRPGLLALIKEAGIDLGRFSEEDIGFGIAPRLNSL 290

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRI ++ +G  LL + D      LA   +  N  R+ +      +A  + +    DI Q 
Sbjct: 291 GRIKDATVGVELLSTFDEDRAGELAKFANQQNDLRKSLVDQFFTEA-VQSVEDSGDISQR 349

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF 427
             +VV G  WH G++G++A+RL +K+ RP+  ++  +  +   GSGRS++ FD+    + 
Sbjct: 350 HTLVVVGHNWHQGVLGIVASRLVDKYQRPTIVMTDTDGSEEVKGSGRSVDNFDL--FKAI 407

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  +  GGH  A GLT+++     L D  +K A      L   P   I GV+  S 
Sbjct: 408 DPIRDQTIGFGGHHSAVGLTIKKDKVPVLKDQLEKAAEEQQLDLSVKPKLAIAGVIPVSQ 467

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545
           V   L D +++  P+G  NP P+F     +L +++ +     HL+ +    ++  L AIA
Sbjct: 468 VTAVLCDQIKTLAPFGQDNPKPIFQVQFDQLANVKAMGKTSDHLKFSLVQGNNR-LTAIA 526

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           F      +    +Q+    + V G +  N W      QL V D  
Sbjct: 527 FGRGSAAVE---LQNSQAAVQVVGEIGENTWNNRTTLQLMVDDLK 568


>gi|253681415|ref|ZP_04862212.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum D str. 1873]
 gi|253561127|gb|EES90579.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum D str. 1873]
          Length = 586

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/599 (28%), Positives = 294/599 (49%), Gaps = 38/599 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W   + +        + +K  I DI A+VL NRN+ S + AK FL  S+  L   P ++
Sbjct: 4   QWRLKVTKCDTKL---LAKKCNISDITAKVLANRNIQSEEEAKKFLRASLEDLY-SPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +    I+ AI   +KI+++GDYD DG  S A++ + L     N   YIPDR  +GY
Sbjct: 60  KDMQQGIDIILDAIDEGKKIVVYGDYDADGVTSTAILYKGLLELHANVEYYIPDREAEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G   + ++    +G  +I+T D G ++ + ++ A N G+ VI+ DHH++  ++       
Sbjct: 120 GMCSNRIKILKEQGTDIILTCDNGISAVEEVKLAKNLGMKVIITDHHELPFKDEHGKREY 179

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A++NP R D       LC AG+ F  +  +Y  +  ++K          ++L  
Sbjct: 180 ILPNADAIINPKRNDCKYPFKMLCGAGIAFKFIQALYTNVGIEDKEA-----YKFIELAG 234

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           + T+CDVV L+  NR      L +     N GLK+LI+ +   +  + + N+G+MIGP I
Sbjct: 235 IGTICDVVDLVEENRIIAKNSLKMISNTTNLGLKSLIDVLGINNKEVKSYNIGFMIGPCI 294

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + L   LLI++D +  + LA  L+ LN+ R+ M    +E+    V  +    
Sbjct: 295 NATGRLDTAALSVELLITNDEERAKELANILNNLNKTRQEMTMRNVEEIIDVV--ENSSF 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+V+  +  H  I G++A +++EKF  P+  ++ +      GSGRSIE +++    
Sbjct: 353 KEDKVLVIYKEDIHESIAGIVAGKIREKFNVPTIILT-KGKEMPKGSGRSIEEYNL--FE 409

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +L K GGH MAAGL+++  N   L     +     +      P  KID  +  
Sbjct: 410 ELLKCKDLLDKFGGHPMAAGLSIKEENINELRQRLNENCK--LTDNDIIPKIKIDKRIPL 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           + VN  LI  +E   P+G GN +P+FA  N K+  +RV+      L++T    D E ++A
Sbjct: 468 NIVNDELISEIEVLEPFGKGNSSPLFAEKNVKVSQVRVLGKNQNTLKLTCIINDKEKIEA 527

Query: 544 IAFRVYGT---------PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           I+F                 + L+     ++ +  +  +N + G+K  QLR+      +
Sbjct: 528 ISFNKVNEFKEMIKSKIAFEKILVNCSDLKLDLIFYPIINEFNGNKTVQLRIKYFRLSQ 586


>gi|254824416|ref|ZP_05229417.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL J1-194]
 gi|293593651|gb|EFG01412.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL J1-194]
          Length = 783

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + +++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADISV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           ALI  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 ALIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|227512140|ref|ZP_03942189.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus buchneri
           ATCC 11577]
 gi|227084534|gb|EEI19846.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus buchneri
           ATCC 11577]
          Length = 776

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 186/585 (31%), Positives = 282/585 (48%), Gaps = 28/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S F+W          +  A+++   I  ++A +L+ R VS + A +DFL PS +    DP
Sbjct: 4   SKFKWQIK-QNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  K   RI  A+ N E+I ++GDYD DG  S  +M   L+    N + YIP+R  
Sbjct: 62  YLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRFS 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    +K IN G  LIITVD G    +A+  A +   DV+V DHH +      AY
Sbjct: 122 DGYGPNVDAFKKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAY 181

Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           A+++P   N+       G L  AGV   V   +   L  D           L+D+ A+ T
Sbjct: 182 AIIHPRVKNQEGQAYPFGDLSGAGVALKVAQALMEDLPID-----------LIDVAAIGT 230

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308
           V D+V L   NRA V  GL   R    PGL ALI+  +I  S    +++G+ I P +N+ 
Sbjct: 231 VADIVSLKDENRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSL 290

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRI ++N+G  LL + D Q+   LA   D  N +R+ +     +QA   V +   D +  
Sbjct: 291 GRIDDANIGVELLSTFDDQKATELAEFADHQNDSRKSLVDEFYQQAVQMVES-SGDAENR 349

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF 427
           S +VV GD WH G +G++A++L EK+GRP+  ++ ++      GSGRS+E FD+    + 
Sbjct: 350 STLVVVGDDWHQGALGIVASKLVEKYGRPTIVLTSQDGNDQVKGSGRSVESFDL--FSAI 407

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  +  GGH  A GLT+ +     L D  +K A +    L   P   I   ++A  
Sbjct: 408 DPIRDQTIGFGGHHSAIGLTINKDKISVLKDQLEKAAGDQELDLSQKPTLDIAAKISADQ 467

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545
           ++   I  L +  P+G  NP PVF     +L  ++ +     HL+ +   ++   L A+A
Sbjct: 468 IDNHFIKNLNALAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLV-KNKSRLTAVA 526

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           F           + +    + V+G +  N W      QL V D  
Sbjct: 527 FGQGAAAGQ---LSNGSASIKVSGEINENTWNNHTTIQLMVSDLK 568


>gi|47097022|ref|ZP_00234595.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes str. 1/2a F6854]
 gi|284801915|ref|YP_003413780.1| hypothetical protein LM5578_1670 [Listeria monocytogenes 08-5578]
 gi|284995057|ref|YP_003416825.1| hypothetical protein LM5923_1622 [Listeria monocytogenes 08-5923]
 gi|47014604|gb|EAL05564.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes str. 1/2a F6854]
 gi|284057477|gb|ADB68418.1| hypothetical protein LM5578_1670 [Listeria monocytogenes 08-5578]
 gi|284060524|gb|ADB71463.1| hypothetical protein LM5923_1622 [Listeria monocytogenes 08-5923]
          Length = 811

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 32  SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 88

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   +A+ YIP+R  
Sbjct: 89  FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 148

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 149 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 208

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 209 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 257

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 258 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 317

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 318 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 374

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 375 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 432

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +++  GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +  + V++
Sbjct: 433 RDLMMAFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 491

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 492 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 551

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 552 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 600


>gi|240948745|ref|ZP_04753117.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor
           NM305]
 gi|240296961|gb|EER47539.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor
           NM305]
          Length = 572

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/562 (31%), Positives = 276/562 (49%), Gaps = 19/562 (3%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           + +   ++ R+  +R V    +   L  +++ L   P  L+  ++A   +V+A      I
Sbjct: 15  QLSEHPLLNRLYQSRGV---QSTKELERTLQHLHH-PQQLSGIEQATDLLVEAYEQQANI 70

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           +I GD+D DGA S AL++  L           IPDR   GYG +  +    + +   L+I
Sbjct: 71  IIVGDFDADGATSTALILLALRQMGFQHVEYLIPDRFSQGYGLSLDIANTILEKEVDLVI 130

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S++ +      GI V+V DHH    +   A A+VNPN          L   GV
Sbjct: 131 TVDNGISSFEGIALLKENGIKVLVTDHHLPAEQLPNADAMVNPNLSYCQFPSKSLAGVGV 190

Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
            F V++ +   +R+ N       +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 191 AFYVMLALRSKMREKNLFQGKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLNRIRS 250

Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
                G+KAL+E        + A +LG+ I P +NA GR+   +LG  LL +D+ +    
Sbjct: 251 GACRVGIKALVEVGKRDLETLQAADLGFAIAPRLNAAGRLENMSLGVELLTADNMEIARQ 310

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           LA +LD LNQ R+  E  M  +A A           +QA  IV+    WH G++G+LA+R
Sbjct: 311 LAFELDSLNQTRKEFEQEMKTEALAICAKLPSLAQKEQAHGIVLYQPDWHQGVIGILASR 370

Query: 390 LKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAG 445
           +K++F RP  A + E +      GS RSI G  +  ++    +    ++VK GGHAMAAG
Sbjct: 371 IKDQFHRPVIAFAQENEDSPFIKGSARSISGLHMRDLLERIDSHYPELIVKFGGHAMAAG 430

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+ + NF +    F +  + ++   +   +   DG L A    + + ++L+ AGP+G  
Sbjct: 431 LTIHQDNFLKFQRIFDEKINEMIEPELLQGIIYTDGELQADEFTLEIANLLQQAGPWGQH 490

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
            P P F   + ++   R++   HL+M  E++    L AI F +      +       K+ 
Sbjct: 491 FPEPTFEG-DFRILQQRLLGGKHLKMMVENERGMLLDAIWFNIDVRAFPDM----SVKKA 545

Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587
            +   L +N ++G+K  QLRV 
Sbjct: 546 KIIYKLDINEFKGNKNLQLRVE 567


>gi|16273133|ref|NP_439370.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae Rd
           KW20]
 gi|260581086|ref|ZP_05848907.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae RdAW]
 gi|1172895|sp|P45112|RECJ_HAEIN RecName: Full=Single-stranded-DNA-specific exonuclease recJ
 gi|1574144|gb|AAC22867.1| single-stranded-DNA-specific exonuclease (recJ) [Haemophilus
           influenzae Rd KW20]
 gi|260092215|gb|EEW76157.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae RdAW]
          Length = 575

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/565 (29%), Positives = 282/565 (49%), Gaps = 20/565 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   ++A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQPQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+D + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCGFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
           ++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R +  
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
                K+   R +     HL+M  E  Q    L AIAF +      +  +    K+  + 
Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L +N +RG++  QL V    P++
Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574


>gi|257898652|ref|ZP_05678305.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           Com15]
 gi|257836564|gb|EEV61638.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           Com15]
          Length = 744

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/563 (30%), Positives = 271/563 (48%), Gaps = 30/563 (5%)

Query: 33  ITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++  +   V ++L  R    +     FL+P  + L  DP ++ D DKA  RI +A+ +
Sbjct: 1   MIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPYLMHDMDKAISRIQEAVIS 59

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI+++GDYD DG  S  +M   L        +++P+R   GYGPN S+ ++ I EG Q
Sbjct: 60  GEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEHGYGPNQSVYQEKIQEGIQ 119

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           LIITVD G    DA+ YA   G+DVI+ DHH++  +   AYA+V+P           L  
Sbjct: 120 LIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYAIVHPRHPAGQYPFPDLAG 179

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
            GV F V   +                   LDLVA+ T+ D+V L   NR  V  G+   
Sbjct: 180 VGVAFKVASALLEE-----------PPAEFLDLVAIGTIADLVSLTDENRILVALGIDAI 228

Query: 272 RRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                 GL+AL E   +      E  +G+ I P +NA GR+G+      LL + D +E  
Sbjct: 229 HHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEAS 288

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           + A KL+ +N+ R+ +   + E+A A V  +        + ++    WH G++G++A ++
Sbjct: 289 IQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHLLVNRGWHEGVLGIVAGKI 342

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             + G+P+  ++ +EDG   GSGRS+E  ++  +        +    GGH  A GLT+  
Sbjct: 343 MNETGKPTLVLTLKEDGSAKGSGRSVEALNL--IEMLDQMRDLFTYFGGHHAAVGLTMPS 400

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N   L +   ++  +    L   P  +ID VL  + V +  ID L+   P+G  NP P 
Sbjct: 401 ENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQ 460

Query: 511 FAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F F   +  +++ +     HL+     + S+ L A+AF        E L+ +    + V 
Sbjct: 461 FLFRQVQAANVKRIGANQQHLKFVLSDESSQ-LDAVAFGFGTQE--EELLNNL---VDVV 514

Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591
           G L +N W G K+ QL V D + 
Sbjct: 515 GKLSINEWNGRKKPQLMVSDFAV 537


>gi|291566819|dbj|BAI89091.1| single-stranded-DNA-specific exonuclease [Arthrospira platensis
           NIES-39]
          Length = 686

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/612 (27%), Positives = 288/612 (47%), Gaps = 35/612 (5%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKD 59
           M DQ  +  E  +   RW      E    A ++++   +  I+A++L+NR + + + A+ 
Sbjct: 1   MEDQPTITTEALLPKQRWHIFP--ERPEIAQSLSETTGVHPIIAQILINRGIETTEQAEA 58

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FLNP  + L        D  K  + +  AI N +KI I GDYD DG  S AL++R LS  
Sbjct: 59  FLNPQSQTLPEPMEEFPDLPKTLQLLQNAIENQQKIAICGDYDADGMTSTALLIRALSQL 118

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
             +    IP R+ +GYG N  ++E+F  +G  +IITVD G ++   +  A   G+ VI+ 
Sbjct: 119 GADITSAIPSRMQEGYGINNRIVEEFHEQGISIIITVDNGISAVGPVARAKELGLTVIIT 178

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
           DHH +  +   A A++NP  L  +S    L   GV +++ + + ++  + + +       
Sbjct: 179 DHHDLPPKLPNADAILNPKLLPKISPYYGLAGVGVAYILALSLAKLRGEVDSLRW----- 233

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL----------IERVNIS 289
            LL+L  L T+ D+ PL G+NR ++ +GL +  +   PG++AL              N +
Sbjct: 234 QLLELFTLGTIADMAPLNGVNRRWIKRGLKILPQSKIPGVQALIQIAGLANQQPNLNNST 293

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
           +P+  E++G+ +GP INA GRIG   +   LL +D        A + +  N  R+ + + 
Sbjct: 294 TPMKPEDIGFRLGPRINAIGRIGNPQVVIELLTTDHMGTALEQAKECEETNLLRKELCAD 353

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           + ++A         +++Q  V+V     WH G++G++A+RL E++G P F  ++E++   
Sbjct: 354 IEQEAIDWYENSNINLEQERVLVPCQKNWHHGVIGIVASRLVERYGVPVFICTYEDEENL 413

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GS R I  F + + + F   + IL K GGH  A G ++   N  +      +FAH  + 
Sbjct: 414 RGSARGIPEFHVFEALQFC--QDILGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQ 471

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529
                P+  +D  +N   +N  L D ++   P G  N  PVF  P  ++   ++V  +H+
Sbjct: 472 VEHLRPLVNVDVRINLMDINYKLYDQIDKIQPCGIENSEPVFWTPKLRVLHQKIVGKSHI 531

Query: 530 QMTFESQD--------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           ++T               T+ AIA+R                 +     L  N W     
Sbjct: 532 KLTLSQDLPPEITMAVLPTISAIAWRWADYF-------PLPSPLDFAYKLRKNTWNNQTA 584

Query: 582 CQLRVLDASPVE 593
            +L ++     E
Sbjct: 585 IELEIVGVRLPE 596


>gi|85373913|ref|YP_457975.1| single-stranded DNA-specific exonuclease [Erythrobacter litoralis
           HTCC2594]
 gi|84786996|gb|ABC63178.1| single-stranded DNA-specific exonuclease [Erythrobacter litoralis
           HTCC2594]
          Length = 587

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 232/594 (39%), Positives = 332/594 (55%), Gaps = 17/594 (2%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAI-PDIVARVLVNRNVSIDYAKDFLNPSIR 66
           GV  S+SG  W    G   +           +  DIV ++L++R V  D  +    P+++
Sbjct: 3   GVSQSLSGKAWRWRGGNMELGD-----GAIGLEDDIVTQLLLSRGVERDDLERHRAPTLK 57

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
             +PDP +  D D AA RI QAI   E I I+GDYDVDGA S AL++R +      A  Y
Sbjct: 58  AFLPDPSVFQDMDNAAERIAQAILAHETITIYGDYDVDGATSSALLIRLIRMLGHEAGHY 117

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDR+++GYGP+   + K    G+ LI+TVDCG+ +++AL  A + G+DVIV+DHH+   
Sbjct: 118 IPDRLLEGYGPSGEALVKLGESGSSLIVTVDCGAMAHEALSMARDAGVDVIVVDHHKCPP 177

Query: 187 EEIPAYALVNPNRLDDLS---GQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSL 241
           +  P  ALVNPNRLD+       GHL A GV FL+ + + R LR+          DL  L
Sbjct: 178 DLPPTVALVNPNRLDESDLAASHGHLAAVGVAFLLAIALVRTLRERGYFDDRPEPDLRGL 237

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVAL TV DV  L GLNRA+V +GL V  ++   G+ ALI+   +       +LG+ +
Sbjct: 238 LDLVALGTVADVASLHGLNRAFVAQGLKVMAKRNTTGMSALIDASRLKRAPACSDLGFAL 297

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGR+GES LG RLL ++D  E   +A +L  LN+ RR +ES + E AE ++  Q
Sbjct: 298 GPRINAGGRVGESTLGVRLLTTEDPDEAREIAEQLSRLNEERRAIESEVQEAAEEQLAAQ 357

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFD 420
                  +V VV G  WHPG++G++A R+KEK G+PS  I+ + +  +G GSGRSI G D
Sbjct: 358 ----HNRAVHVVAGHGWHPGVIGIVAGRIKEKTGKPSLVIALDGESAQGKGSGRSIAGVD 413

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +  A E  +LV GGGHAMAAGLTV+      L D+ +      V   +      +D
Sbjct: 414 LGAAIIAARENDLLVAGGGHAMAAGLTVDADKVEALADWLEARLEGPVGRAMAEKAMTLD 473

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
             +    +   L+  L+ AGPYG G P P  A     +    +V   HL++   S +  +
Sbjct: 474 LAVGPRGLTPELVHSLDRAGPYGVGWPGPRVAVGPVHVIKADIVGNDHLRLIAGSVEGGS 533

Query: 541 LQAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           L+AIAFR   T  G+ L+  +RG+R+ + G   ++ W      +L + DA+  +
Sbjct: 534 LKAIAFRAASTDWGQALLHSARGRRLWLAGRARIDDWGARPAAELHLEDAAWAD 587


>gi|167622802|ref|YP_001673096.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           halifaxensis HAW-EB4]
 gi|167352824|gb|ABZ75437.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           halifaxensis HAW-EB4]
          Length = 574

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/564 (30%), Positives = 272/564 (48%), Gaps = 21/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              I+ ++  +R +S    +  L   +R     P  +   ++AA+ I   I   + I+I 
Sbjct: 20  FSPILKQIYASRGLSASDCELSLAKLLR-----PDTMAGLEQAAKIIADGIAAQKAILIM 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S ++ +  L        +  IP+R   GYG +P ++    ++ A+L+ITVD
Sbjct: 75  GDFDADGATSTSVCILALRMMGAQKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +  A   G+ V++ DHH        A A+VNPN+         +   GV F 
Sbjct: 135 NGISSIEGVAAAKACGMTVVITDHHLPGHTLPDADAIVNPNQDGCGFASKSIAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-AR 272
           ++  +   LR  N          +L  LLD+VAL TV DVV L   NR  V  GL     
Sbjct: 195 LMSALRAELRSRNWYLEQGISEPNLAQLLDIVALGTVADVVSLDTNNRILVEAGLQRVKA 254

Query: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ DD      
Sbjct: 255 GRCRVGITALLEVAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDIMLARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E+ M ++A   + + + ++ +    I +    WH G++G+LA+R+
Sbjct: 315 MASELDGLNAERRDLEADMQQEALKSLESIELNEAELPWGIAIYQADWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           K+K+ RP  A +   DG+  GS RSI+G  +  ++        G+++K GGHAMAAGL++
Sbjct: 375 KDKYHRPVIAFAEAGDGEIKGSARSIKGLHMRDLLELINTRHPGLILKFGGHAMAAGLSI 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +   F    D + K    ++   + T     DG L      + L   L SAGP+G   P 
Sbjct: 435 QAGQFALFADAYDKAVREVLAPELLTGELVSDGELVPEQFKLELASELRSAGPWGQSFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     ++   R+V   HL++  E++     L AIAF V      +  +Q       V
Sbjct: 495 PLFDGY-FRVIQQRIVGEKHLKLILETECGRVMLDAIAFNVDLKTWPDATIQYA----QV 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L VN +RG++  QL V    P
Sbjct: 550 VYKLDVNEFRGNQSLQLMVEQIEP 573


>gi|227544987|ref|ZP_03975036.1| recombination protein J [Lactobacillus reuteri CF48-3A]
 gi|300909978|ref|ZP_07127438.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           reuteri SD2112]
 gi|112944334|gb|ABI26346.1| single-stranded DNA-specific exonuclease [Lactobacillus reuteri]
 gi|227185030|gb|EEI65101.1| recombination protein J [Lactobacillus reuteri CF48-3A]
 gi|300892626|gb|EFK85986.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           reuteri SD2112]
          Length = 775

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/578 (28%), Positives = 273/578 (47%), Gaps = 21/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           F+W  L           + ++  I  I+A +L  + +   + AK F  PS+  +  DP +
Sbjct: 6   FKW-ELADNASSVTVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIH-DPTL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QA+   E+I I+GDYD DG  S +LM   L     N N Y+P+R  DG
Sbjct: 64  LHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN    ++ I+ G QL ITVD G +  + +      G+DV++ DHH++ ++   A A+
Sbjct: 124 YGPNMDAYQRLIDNGTQLFITVDNGVSGKNVIDKVIAAGVDVVITDHHELPADLPNAVAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P           L   GV F V   +      +            LDLVA+  + DVV
Sbjct: 184 VHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPVEE-----------LDLVAIGEIADVV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            +   N A +  G+   R+   PGL AL++  +I  + +T +++G+ I P +NA GRI +
Sbjct: 233 NVTDENHALISYGIQQLRQGMRPGLAALMKLADIKANNLTDQDIGFGIAPRLNALGRIAD 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N G +LL S D  E + LA ++D  N+ R+ + + ++++AE +        QQ   +++
Sbjct: 293 ANDGVKLLTSLDENESQKLAKEVDQANKERQNLVAEIMKEAEKQA--NSSANQQKRTLLI 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++A+R+  + G+P+   S +++   +  G            +      +
Sbjct: 351 VGKGWHQGVLGIVASRIMNETGKPTIVASTDQNNPTLIKGSGRSIDSFNLFNALEAHREL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
            +  GGH  A GL+ ++ N   L    ++ A              I   L  + V   L 
Sbjct: 411 FITFGGHPAACGLSFDQKNIVPLQIALEEEAVKQKFDPTVKQPLPIAMKLVPADVTQQLY 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTP 552
           + ++   P+G GN  PVF   N K+  ++ +   H  + F    D + L  +AF      
Sbjct: 471 NDIQRVAPFGPGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSDKKNLTVVAFGQGNLA 530

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               L+ +   ++++   + +N WRG K  QL + D  
Sbjct: 531 ---TLLSAPTGQINLAVKVSLNEWRGKKSVQLMLEDLQ 565


>gi|226945985|ref|YP_002801058.1| single-stranded-DNA-specific exonuclease RecJ [Azotobacter
           vinelandii DJ]
 gi|226720912|gb|ACO80083.1| single-stranded-DNA-specific exonuclease RecJ [Azotobacter
           vinelandii DJ]
          Length = 569

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/561 (30%), Positives = 273/561 (48%), Gaps = 18/561 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V    +   L+  +  L+P    L   + A   +V+A+    +I+ 
Sbjct: 17  DLPPLLTRLYAARGV---QSAAELDKGLAQLLPY-RRLKGIEAAVALLVEALRERRRILF 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L        +  +P+R   GYG  P ++   +    +L++TV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAEHVDYLVPNRFEYGYGLTPEIVAVALERRPELLVTV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSLDGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCDFPSKALAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR+          +L  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLLALRARLRELGWFAGRNEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGL+AL+         IT+ +LG+++GP +NA GR+ + +LG   L+ +D +    +
Sbjct: 253 RARPGLRALLGVAGRDPRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEELAREM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A++LD LNQ+R+ +E  M  +A A++     + +    + +    WH G++G+LA+RLKE
Sbjct: 313 AVQLDQLNQDRKAIEQGMQREALAQLRELPVE-ELPFGLCLFEPDWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   D    GS RS+ GF I   +    A + G++ K GGHAMAAGL++ R
Sbjct: 372 RYHRPAIAFADAGDDLLKGSARSVPGFHIRDALDAVAARQPGLISKFGGHAMAAGLSLPR 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F       + A         DG L  +  ++ L   L  AGP+G   P P+
Sbjct: 432 ENFAAFAAAFDAEVRRQLRADDLNGRLLSDGPLGIAEFHLDLARALRQAGPWGQHFPEPL 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   R+V   HL++   S+     L AIAF +              +   +  
Sbjct: 492 FHGT-FQLVQQRLVGERHLKLVVRSECGVLQLDAIAFNIDREQWP----NPAVRWAELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L VN +RG +  QL V+   
Sbjct: 547 RLDVNEYRGQESVQLVVVHIE 567


>gi|52425594|ref|YP_088731.1| RecJ protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307646|gb|AAU38146.1| RecJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 591

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/561 (29%), Positives = 282/561 (50%), Gaps = 18/561 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  +R++        L+ ++  ++  P  L   D+A + ++ A    +K++I G
Sbjct: 38  DPLLDRLYRSRHIKNSQQ---LDRTLHSMLA-PNQLQGIDQAVQLLITAREKQQKVIIVG 93

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG + ++ E  + +G +L+ITVD 
Sbjct: 94  DFDADGATSTALTVSALRQLGFTDVDYLVPNRFEQGYGLSVAVAEMALAKGVELLITVDN 153

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S D + +   +G+ V++ DHH        A A+VNPN  D       L   GV F +
Sbjct: 154 GVSSLDGVAFLKGRGVRVLITDHHLPPEILPAADAIVNPNLADCHFPSKALAGVGVAFYL 213

Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +   LR+  +       +   LLDLVAL T+ DVVPL   NR    +GL  +   + 
Sbjct: 214 MLALRAKLRESGEFNEKTQPNFTELLDLVALGTIADVVPLDQNNRILAHQGLARIRAERC 273

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++ALIE  N   S ++A +LGY I P +NA GR+   ++G  LL++D  ++   LA+
Sbjct: 274 RYGIRALIEVANKDISQLSASDLGYSIAPRLNAAGRLDNMSVGVELLLADSMEQARALAL 333

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M  +A            +  + I +    WH G++G+LA+R+K++
Sbjct: 334 ELDGLNQTRKEIEQGMKAEALEICRNLTALKTELPTGIALYQADWHQGVLGILASRIKDQ 393

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A + +++G   GS RSIEG  +   +         ++VK GGHAMAAGLT++  
Sbjct: 394 FHRPVVAFAQDQNGLLKGSARSIEGLHMRDALERINTLYPDMIVKFGGHAMAAGLTIKEE 453

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F      F +   + +   +   +   DG L  + +N+   ++L+ AGP+G   P P+F
Sbjct: 454 LFADFQRSFNQVVTDWLDKDMLQGIVWTDGDLPQTMMNMNTAELLKQAGPWGQAFPEPIF 513

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                ++   R+V   HL+M  E         AIAF +      +  +++      +   
Sbjct: 514 DGE-FRILQQRLVGEKHLKMLVEPVNGGPLFDAIAFNIDTRYYPDLSIRTAV----LAYK 568

Query: 571 LCVNYWRGSKRCQLRVLDASP 591
           L +N +RG++  QL V    P
Sbjct: 569 LEINEFRGNRDVQLLVDYIQP 589


>gi|290580163|ref|YP_003484555.1| putative single-strand DNA-specific exonuclease [Streptococcus
           mutans NN2025]
 gi|254997062|dbj|BAH87663.1| putative single-strand DNA-specific exonuclease [Streptococcus
           mutans NN2025]
          Length = 734

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/583 (29%), Positives = 276/583 (47%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     +        + +K  +    A++L  R   + +  + FL P +  L  DP
Sbjct: 4   SKYAWKINEKKPDDG-FFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI +AI  +E+I+I+GDYD DG  S ++    L         Y+P+R  
Sbjct: 62  FLLNDMDKAVTRIRRAIETNERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G   +DA+ YA  QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQGQGVDVIVTDHHSMPAELPSA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P   D       L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 YAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL+ LI    +    I  E +G+ + P +NA GR
Sbjct: 231 DMVSLTDENRVMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E + +A  ++  N+ R+ +  A+ E+A   V       +  SV
Sbjct: 291 LDDPNPAVELLTGFDDEEAKTIAAMINEKNEERKTIVQAIFEEAMTLV------DENKSV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WH G++G++A R+ E+  +P   ++  E+G   GS RS+E  +I    +    
Sbjct: 345 QVLAKEGWHAGVLGIVAGRIMEQINQPVIVLN-IENGIAKGSARSLESVNI--FNALDAH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + +  GGHA AAG+T+E      L      +       L       ID  L    +++
Sbjct: 402 RDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE+  P+G  N  P+F   +  ++ +R +     HL++    +       +AF  
Sbjct: 462 DTLKGLETLAPFGMDNKKPIFLLRDFTVKQVRTMGQNGAHLKLKVAQEQ-AVFDLLAFN- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           YG+ + EF    + + + +   L VN W G+   QL ++DA  
Sbjct: 520 YGSLVTEF---QQAQHLELAVTLSVNRWNGNTSLQLMLVDARV 559


>gi|254828241|ref|ZP_05232928.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL N3-165]
 gi|258600629|gb|EEW13954.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL N3-165]
          Length = 783

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E I+++GDYD DG  S+A++M+ L H   +A+ YIP+R  
Sbjct: 61  FLFAEMDLAVARIKQAIERNELILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADSAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +++  GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +  + V++
Sbjct: 405 RDLMMVFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|186684853|ref|YP_001868049.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme
           PCC 73102]
 gi|186467305|gb|ACC83106.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme
           PCC 73102]
          Length = 715

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/632 (26%), Positives = 298/632 (47%), Gaps = 64/632 (10%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW     +     A  +     +  I++++L+NR + + + A+ FL P   L++P 
Sbjct: 16  LPNQRWQIYPQKPEF--AQKLAVLINVSPIISQLLINRGMETPEQAQAFLEPE-SLVLPS 72

Query: 72  P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P     D   +   +  AI +  KI I GDYD DG  S AL++R L       +  IP R
Sbjct: 73  PLEDFPDLAISLELLQNAIASQTKIAICGDYDADGMTSTALLLRSLRTLGAQVDYAIPSR 132

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N  ++E+F +EG  LI+TVD G ++++ +  A   G+ VI+ DHH +  +  P
Sbjct: 133 MHEGYGINKRIVEEFHSEGVGLILTVDNGISAFEPVARARELGLAVIITDHHDIPQKLPP 192

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  + + S    +   GV +++ V + + L +   +     +  +L L  L T+
Sbjct: 193 ANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGETKGL-----IQPMLALFTLGTI 247

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP------------------- 291
            D+ PL G+NR +V +GL    +    G++ALI+   + +                    
Sbjct: 248 ADLAPLTGVNRRWVKRGLQHLPKSNLAGIQALIQVGGVQARGEERAGGAGEQGSRGAGEE 307

Query: 292 ---------------------ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                                +  E++G+ +GP INA GRIG       LL +DD     
Sbjct: 308 IANTSTSLSTSPKSKIQNPKSLKPEDIGFRLGPRINAIGRIGNPQTVIELLTTDDMGVAL 367

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAAR 389
             AM+ + +N +R+ M   + ++A A V ++    +QQ  V++V    WH G++G++A+R
Sbjct: 368 ERAMQCEQINASRQEMCQQIEQEAIAYVESEFVTSLQQDRVLIVVQPNWHHGVIGIVASR 427

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
           L E++G P F  ++E+     GS RSI  F++ + + +     +L K GGH  A G ++ 
Sbjct: 428 LVERYGVPVFIGTYEDGEHIRGSARSIPEFNVFEALEYCH--DLLGKYGGHKAAGGFSLP 485

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             N   +     +FA+  +      P+ KID  +N   +N  L   L +  P G  NP+P
Sbjct: 486 AENLQMVRSRLIEFANQCLEPQHLKPLLKIDAEVNLDQINQQLYQQLNALHPCGMDNPDP 545

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFE---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           VF   N ++   ++V   H+++T           ++AIA+R      G++       R+ 
Sbjct: 546 VFWTANVQVVEQKIVGKGHIKLTIAQTIDNQDYRIKAIAWR-----WGDYFRLPP--RVD 598

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHF 597
           V   L  NY+ G+   +L ++    P++   F
Sbjct: 599 VAYKLRENYFNGNTTIELELIGVRLPIQIQKF 630


>gi|217964328|ref|YP_002350006.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes HCC23]
 gi|217333598|gb|ACK39392.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes HCC23]
 gi|307571106|emb|CAR84285.1| single-stranded-DNA-specific exonuclease [Listeria monocytogenes
           L99]
          Length = 783

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREIMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKVT---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLIELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|224499814|ref|ZP_03668163.1| hypothetical protein LmonF1_09064 [Listeria monocytogenes Finland
           1988]
          Length = 783

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   +A+ YIP+R  
Sbjct: 61  FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +++  GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +  + V++
Sbjct: 405 RDLMMAFGGHPMAAGLTLLAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|269140270|ref|YP_003296971.1| ssDNA exonuclease RecJ [Edwardsiella tarda EIB202]
 gi|267985931|gb|ACY85760.1| ssDNA exonuclease RecJ [Edwardsiella tarda EIB202]
 gi|304560097|gb|ADM42761.1| Single-stranded-DNA-specific exonuclease RecJ [Edwardsiella tarda
           FL6-60]
          Length = 577

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           IP ++ R+  NR V        L   ++ L+     L   ++A   + +A+    +++I 
Sbjct: 22  IPPLLRRLYGNRGVRSA---AELERGVKGLLSY-QQLNGIERAVTLLQEALAQRLRLVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     +     +P+R  DGYG +P ++E+    GA+LI+TVD
Sbjct: 78  GDFDADGATSTALSVLALRAMGCDSVQYLVPNRFEDGYGLSPEVVEQAAAMGAELIMTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A+VNPN  D       L   GV F 
Sbjct: 138 NGVSSHAGVEAAHARGIRVLVTDHHLPGETLPAAEAIVNPNLADCDFPSKSLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ + R L +            +L  LLDLVAL TV DVV L   NR  V +GL   R 
Sbjct: 198 LMLALRRHLVEQGWFEQLGRPAPNLADLLDLVALGTVADVVALDTNNRILVHQGLSRIRA 257

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E     +  +TA +LG+ +GP +NA GR+ + +LG  LL+SDD  +   
Sbjct: 258 GRCRPGIRALLEVAKRDALRLTASDLGFALGPRLNAAGRLDDMSLGVALLLSDDMPQARA 317

Query: 332 LAMKLDVLNQNRRLMESAMLEQAE-AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           LA  LD LNQ RR +E  M  +A       +    Q    + +    WH G+VG+LA+R+
Sbjct: 318 LACDLDTLNQTRREIEQGMQSEALAICAGLERTLTQLPYGLALYHPEWHQGVVGILASRI 377

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KE+F RP  A +   +G   GSGRS+ G  +   +        G++ K GGHAMAAGLT+
Sbjct: 378 KERFYRPVIAFAPAGEGLLKGSGRSLPGLHMRDALERLDTQHPGLMQKFGGHAMAAGLTI 437

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E   F      F +     +       V   DG L++  + + + ++L   GP+G   P 
Sbjct: 438 EATRFDDFRHHFDELVGEWLDPAQLEGVVWSDGALSSDELTLPVAELLRDGGPWGQAFPE 497

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P F     ++   R+V   HL++  E       L  IAF V      +    +  + + +
Sbjct: 498 PTFDGQ-FRILQQRLVGERHLKLMLEPLGGGPLLDGIAFNVDTALWPD----ASVREVEL 552

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
              L +N +RG++  QL +    P
Sbjct: 553 AYRLDINEYRGNRSVQLMIQHLWP 576


>gi|303253936|ref|ZP_07340057.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae BS455]
 gi|302599112|gb|EFL66137.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae BS455]
          Length = 740

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 179/591 (30%), Positives = 286/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W      E  N    I +K  +   VAR+L  R + + +  K FL PS+  L  DP +
Sbjct: 6   YEWQFASQVEDAN-FTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|254410884|ref|ZP_05024662.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182239|gb|EDX77225.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus
           chthonoplastes PCC 7420]
          Length = 652

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/586 (29%), Positives = 285/586 (48%), Gaps = 21/586 (3%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
             RW          +A  + Q   +  ++ +VL+NR     D A  +L P     MP P+
Sbjct: 3   NQRWQI--SSANPEKANQLAQGTGLSPLLGQVLLNRGFDTVDQAMVYLYPE-SQAMPSPM 59

Query: 74  -ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
               D   +   + +AI  +EKI I GDYD DG  S AL++R L     +    IP R+ 
Sbjct: 60  DEFPDLAISVEMLKEAIAENEKIAICGDYDADGMTSTALLLRALRWLGADVEYGIPSRMK 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N  ++E+F NEG  +I+TVD G  ++DA+  A   G+ VI+ DHH +  E   A 
Sbjct: 120 EGYGINTRIVEEFANEGVGIILTVDNGIAAHDAIARAVELGLMVIITDHHDLPPELPNAD 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP +L + S    L   GV +++ V + + L Q   +        LL+L  L T+ D
Sbjct: 180 AILNPKQLPESSPYRSLAGVGVAYILAVTLAQDLGQLQGLTS-----QLLELFTLGTIAD 234

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---ITAENLGYMIGPSINAGG 309
           + PL  +NR ++ +GL    +    G++ALI+   +S     +  E++G+ +GP INA G
Sbjct: 235 LAPLTDINRRWLKRGLQRLPKSQLAGIQALIQMSGVSEDQIALKPEDIGFKLGPRINAVG 294

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ +  +   LL + D+      AM+ + +NQ R+ + + + E+A A + T+  + QQ  
Sbjct: 295 RLADPQIVIELLTTSDAGIALERAMQCEQINQKRQQLCAEIEEEAIALIETEALNWQQQR 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+V+    WH G++G++A+RL E++G P F  ++E++ +    G +    +     +   
Sbjct: 355 VLVLVQPDWHHGVIGIVASRLVERYGVPVFIGTYEDENQEHIRGSARGIPEFHVFEALQF 414

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +L K GGH  A G ++   N          FAH  +      P+  ID   N + + 
Sbjct: 415 CHDLLGKFGGHQAAGGFSLPSENLTAFQTQLSHFAHQCLEPEHLKPLVAIDTEANFNQIT 474

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRV 548
             L   ++   P G GNP+P+F  PN ++   R+V   HL++T    D  + L AIA+R 
Sbjct: 475 YNLYQQIDRLHPCGIGNPDPIFWTPNVRVVEQRLVGKGHLKLTLSGFDGTKQLNAIAWR- 533

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                GE+        + +   L  N W G+   +L ++     E 
Sbjct: 534 ----WGEYF--PLPSTVDIAYKLKDNAWNGTVTIELELVGIRVSES 573


>gi|325977986|ref|YP_004287702.1| single-stranded-DNA-specific exonuclease [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177914|emb|CBZ47958.1| single-stranded-DNA-specific exonuclease [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 735

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/593 (29%), Positives = 288/593 (48%), Gaps = 34/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S + W ++  +   N    +T+K  + ++ +++L +R V   +    FL+  +  L  DP
Sbjct: 4   SKYNWKNIEKEPD-NGFFELTKKEKLTELASQILYSRGVDTVEKLTQFLSTDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S ++M   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVERIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A+ YA +QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQSQGVDVIVTDHHGLPAELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P   +      +L   GV F V   +   +              +LDLVA+ T+ 
Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL  L++  ++    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A  ++  N+ R+ +   + E+A + V  +        V
Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQKIFEEAMSMVDLE------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGLAKGSARSIEAINI--FHALDEH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+    GGHA AAG+T+   N  +L      +       L       ID VL  S +++
Sbjct: 402 RGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE   P+G  NP PVF   +  ++  R +     HL++   +Q +  +  +AF  
Sbjct: 462 DTVHSLEKLAPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                       + + + +   L +N W G    QL + DA  VEG      +
Sbjct: 521 GHL----AQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568


>gi|228472316|ref|ZP_04057082.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276519|gb|EEK15243.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 569

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/580 (29%), Positives = 274/580 (47%), Gaps = 31/580 (5%)

Query: 18  WVSLLG---QEGINRALAITQKHAI---PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           W  L      E    A A+ Q   I      +A +L+ R + +++ AK F NPS+  L  
Sbjct: 7   WNFLPTPQQNEVETLASALFQVQEILPWHRTIASLLLQRGIATVEQAKTFFNPSLSDLF- 65

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P ++ D D+A  RI+ A+ + E+I+I+GDYDVDG  SVAL+  FLS        Y+PDR
Sbjct: 66  NPFLMKDMDRAVERILLAMAHKERILIYGDYDVDGTCSVALLYLFLSKIYPEVAYYVPDR 125

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             +GYG +   ++   +    LIIT+DCG  ++D + YA  +GID+I+ DHH       P
Sbjct: 126 YREGYGVSCEGIDFAQDNEMSLIITLDCGIKAHDKVFYARERGIDMIITDHHTPDDTIPP 185

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP R D       LC  G+ F ++  + + L             + LDLVALAT 
Sbjct: 186 AVAVLNPKRTDCSYPYKELCGCGIGFKLIQALCKSLG-----YPLETAYAYLDLVALATC 240

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
            D+VP+ G NR  V  GL     + +  ++ L+   N   PI   +L ++  P INA GR
Sbjct: 241 ADIVPITGENRILVSVGLKQINERPSEVMQLLLSTAN--PPIQVRDLVFVAAPRINAAGR 298

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  ++     LI +  +E  +    L+  N  R+  +  + ++A +++       + A  
Sbjct: 299 MNHASRAVDFLIGESMEEATL----LEHFNTQRKTADEQITQEALSQI--LGSHEEDAPA 352

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            VV    WH G++G++A+RL E + RP+   +   +     S RS+ GF++ +       
Sbjct: 353 TVVFSPHWHKGVIGIVASRLTEIYYRPTIVFTQSGE-VLAASARSVRGFNLYEA--LCEC 409

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +  L++ GGH  AAG+T+   N+ R    FQ      +P  + +P   I   +    +  
Sbjct: 410 KDELIQFGGHTAAAGMTLLPENYQRFKLKFQAVVDRTLPQELRSPTIMISARMPLHVITS 469

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFR 547
           +    L+   P+G  N  P+F       +S+ +V    +HL+M        +   AI F 
Sbjct: 470 SFYRCLQRFSPFGPKNMTPIFQADEVIAKSVSLVGSDRSHLRMILTDTSLKQEFVAIGFG 529

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           +             GK   +   L  N+WRG+   QL V 
Sbjct: 530 LGHKKEA----VESGKPFTIAYELSENHWRGTTSLQLVVK 565


>gi|56696609|ref|YP_166970.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria pomeroyi
           DSS-3]
 gi|56678346|gb|AAV95012.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria pomeroyi
           DSS-3]
          Length = 551

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 224/558 (40%), Positives = 321/558 (57%), Gaps = 9/558 (1%)

Query: 33  ITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS 92
           + Q+  +P  V +VL  R V    A+ FL+P ++ L+PDP  L D + AA R + A+   
Sbjct: 1   MRQQTDLPQAVCQVLARRGVPAIEARGFLDPKLKELLPDPRKLKDMEIAAARFLAAVAGR 60

Query: 93  EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152
           ++I +F DYDVDG +S AL++ +L      A +Y+PDRI +GYGPN   M      G  L
Sbjct: 61  QRIAVFADYDVDGGSSAALLICWLREMGQTATLYVPDRIDEGYGPNEVAMADLAR-GHDL 119

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
           I+ VDCG+ S+  +  A  +G DVIV+DHH          A+VNPNR D+    G+ CAA
Sbjct: 120 IVCVDCGTLSHGPI--AAAKGADVIVLDHHLGAETLPECVAVVNPNRQDESGDLGYFCAA 177

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           GVVFL+LV   R LR   +     DL+++LDLVALATV DV PLI  NRA V +GL V  
Sbjct: 178 GVVFLMLVEAGRQLRARGQ--RGPDLMAMLDLVALATVADVAPLIEANRALVRQGLKVMA 235

Query: 273 RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           ++  PGL AL +   + +     +LG+++GP +NAGGRIG+++LG+RLL +D   E + L
Sbjct: 236 QRQRPGLVALADIARMDAMPNTYHLGFLLGPRVNAGGRIGQADLGARLLSTDSMSEAQAL 295

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD+LN  RR +E+A+   A  +  T+  +   A ++   G+ WHPG+VG++A+RLKE
Sbjct: 296 AERLDLLNTERREIEAAVRAAALDQAETRGLE---APLVWAAGEGWHPGVVGIVASRLKE 352

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452
              RP+  I F +  +G GSGRS+ G D+G  +     EG+LVKGGGH MAAGLTV R  
Sbjct: 353 SANRPAIVIGF-DGDEGKGSGRSVAGVDLGASIQRLAAEGLLVKGGGHKMAAGLTVLRDR 411

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
                +   +               ++DGVL   A  + L++ +E AGPYGA  P P FA
Sbjct: 412 LEPAMERLSELLAKQGAGQGGPADLRLDGVLMPGAATVELLEQIELAGPYGASAPAPRFA 471

Query: 513 FPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
            P+ +++  + V  +HL+++        L AI F  +   +G  L    G R H  G L 
Sbjct: 472 LPDLQIRFAKRVGASHLKLSLADGMGGGLDAILFGAFDGEIGPILENHGGARFHFAGRLE 531

Query: 573 VNYWRGSKRCQLRVLDAS 590
           +N W G +  QLRV D +
Sbjct: 532 INSWGGRQSVQLRVDDVA 549


>gi|199597083|ref|ZP_03210515.1| Single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus
           HN001]
 gi|258508593|ref|YP_003171344.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           rhamnosus GG]
 gi|199591887|gb|EDY99961.1| Single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus
           HN001]
 gi|257148520|emb|CAR87493.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           rhamnosus GG]
 gi|259649900|dbj|BAI42062.1| single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus
           GG]
          Length = 764

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/585 (28%), Positives = 275/585 (47%), Gaps = 27/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           + +RW     Q        ++Q  A+P  +A +L  R +      + F++P I  L  DP
Sbjct: 2   TQYRWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKDKAEYEAFVHPDISRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI  ++KI I+GDYDVDG  S ++M+  L       +++IPDR  
Sbjct: 60  FALHDMDKAVARILEAIEQNQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G    D +  A   G+DV+V DHH++      A 
Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGADVIDPAQAAGMDVVVTDHHELPETLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVKLTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPDTVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + S + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEEDVAADLAQQVGKLNQERQGLVSKIAQEALTMA--QTPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E  G+P+  ++  +DG    GSGRSI  + +   +  A  
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGDTAKGSGRSIAAYHLFNALEPA-- 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E  +V  GGH MA GLT +      +    +  A  ++   +  P   I   L    + +
Sbjct: 405 EDKMVHFGGHHMAVGLTAKTAELSAIHAQMEAAAATMLK-TVPKPALPIAARLEVGDLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
               ++    P+G GNP P F+     +Q+++ +   +  + F+      +  I F    
Sbjct: 464 EHYQLIRQLAPFGQGNPEPTFSVRPQVVQNVKPIGKENAHLRFQIDQG--VNVIGFGFG- 520

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                    +  + + +   L  N W+G+   QL + D +  +  
Sbjct: 521 ---SAAATLAEAQAIKLAVQLDQNTWQGNTSLQLMLKDYAVKQPQ 562


>gi|15602057|ref|NP_245129.1| hypothetical protein PM0192 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720413|gb|AAK02276.1| RecJ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 573

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/575 (29%), Positives = 281/575 (48%), Gaps = 20/575 (3%)

Query: 28  NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87
            RA+ + +  +   ++ R+   R +        L+ ++  L+  P  L   + A    VQ
Sbjct: 7   RRAVPLGEAVSSDPLLDRLYRARQIQHPQQ---LDRTLAALLH-PQQLDGIEAAVTLFVQ 62

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFI 146
           A    EKI+I GD+D DGA S AL +  L           IP+R   GYG + ++ E+ +
Sbjct: 63  AYKQQEKIVIVGDFDADGATSTALAVLALRQLGFTQVAFLIPNRFEQGYGLSIAVAEQAL 122

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
            +  QL++TVD G +S + + +   QG+ V++ DHH   ++   A A+VNPN        
Sbjct: 123 EKDVQLLMTVDNGVSSVEGVAFLKAQGVKVLITDHHLPPTQLPDADAIVNPNLSSCAFPS 182

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
             L   GV F +++ +    R+          +   LLDLVAL T+ DVVPL   NR   
Sbjct: 183 KALAGVGVTFYLMLALRAKFRELGIFNQQTQPNFTDLLDLVALGTIADVVPLDQNNRILA 242

Query: 265 VKGL-MVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +GL  +   +   G++AL E  N     ++  +LG+ + P +NA GR+   ++G  LL+
Sbjct: 243 YQGLARIRAERCRCGIRALAEVANRDMRQLSTSDLGFSLAPRLNAAGRLDNMSVGVELLL 302

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHP 380
           ++D      LA++LD LNQ R+ +E  M  +A  ++  Q   +QQ     I +    WH 
Sbjct: 303 AEDMASARALALELDGLNQTRKEIEQGMKLEAL-EICRQLTALQQTLPFGIALYQADWHQ 361

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGG 438
           G++G++A+R+K+ F RP  A + E+ G   GS RS+EG  +   +     +   +++K G
Sbjct: 362 GVLGIVASRIKDHFHRPVVAFAQEQAGILKGSARSVEGLHLRDALERIHCLYPDMILKFG 421

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLT++   F      F +   + +       +   DG L++  +++   + L+ 
Sbjct: 422 GHAMAAGLTIQESRFADFQQAFNQIVGDWLDEGQRQGIVWTDGELDSVQLSLTTAECLKE 481

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFL 557
           AGP+G   P PVF     K+   R+V   HL+M  E  Q    L AIAF V      +  
Sbjct: 482 AGPWGQAFPEPVFDGE-FKILQQRLVGEKHLKMMVEPKQGGPLLDAIAFNVDTRYYPDLS 540

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +    K   +   L +N +RG++  QL V    P+
Sbjct: 541 I----KLAKLAYKLDINEFRGNRHLQLLVDYIVPI 571


>gi|328465562|gb|EGF36791.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes 1816]
          Length = 783

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|47094196|ref|ZP_00231911.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes str. 4b H7858]
 gi|47017423|gb|EAL08241.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes str. 4b H7858]
          Length = 725

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|226224126|ref|YP_002758233.1| single-stranded-DNA-specific exonuclease (RecJ) [Listeria
           monocytogenes Clip81459]
 gi|225876588|emb|CAS05297.1| Putative single-stranded-DNA-specific exonuclease (RecJ) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 783

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 288/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++    LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAVDLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|126665069|ref|ZP_01736052.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter sp.
           ELB17]
 gi|126630439|gb|EBA01054.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter sp.
           ELB17]
          Length = 583

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 286/565 (50%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P I+ R+   R V+ D    +   ++R L   PL L   D+A   + +AI   ++++I
Sbjct: 28  DLPPILRRLYAARGVTSDDQLSY---TLRHL-ASPLQLRGIDRAVELLAEAIEKQQRVLI 83

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN--EGAQLII 154
            GD+D DGA S A+ +  L    +   +  +P R  DGYG  P ++ +         LI+
Sbjct: 84  LGDFDADGATSTAVALLGLGMLGLKHVDFKVPSRFSDGYGLTPGIIYRLQEDGPLPDLIV 143

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  + + ++ A   G+ V+V DHH    E   A A+VNPN+        +    GV
Sbjct: 144 TVDNGIAAVEGVRAARELGMLVVVTDHHLAGDELPQADAIVNPNQPGCEFISKNAAGVGV 203

Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +F VL  + + LR+  ++P    +L +LLDLVAL TV DVVPL   NR +V +GL   R+
Sbjct: 204 MFYVLTALRKHLREQGRLPDPEPNLGTLLDLVALGTVADVVPLDHNNRIFVEQGLRRIRQ 263

Query: 274 QG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG+ AL+E        I++ +LG+++GP +NA GR+ + ++G   L++    E   
Sbjct: 264 GKTRPGILALLEVAGRDHTAISSTDLGFVVGPRLNAAGRLDDMSVGIACLLASSPDEARR 323

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390
           LA +LD  N+ RR +E  M  QA+  + +   D++       +    WH G++G+LAAR+
Sbjct: 324 LAQELDTFNRERRTIEKDMKVQAQDLLASMSLDLEGLPWGLALFDPDWHQGVIGILAARI 383

Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLT 447
           +E+  RP+ A + +E+G+   GS RSI G  I   ++   A   G+L K GGHAMAAG+T
Sbjct: 384 REQTNRPTVAFASDENGEDIKGSARSIPGLHIRDALAVVDARHPGLLKKYGGHAMAAGMT 443

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +     + F K   + + A         DG L+AS +N+    +L+ AGP+G   P
Sbjct: 444 LAAGDLEAFSNAFDKAVRDKLTAADLEAAITTDGPLSASELNLDTAALLKRAGPWGQHFP 503

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F      + S R+V   HL++  +  +    +  IAF   G+ + ++        + 
Sbjct: 504 EPLFDGE-FSVVSQRIVGQNHLKLVLQPTEGGNIIDGIAFN-TGSEVPDYTHTG----VR 557

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           V      N +RG    QL +    P
Sbjct: 558 VVYKPDANTFRGRTNLQLMIDYLEP 582


>gi|46907753|ref|YP_014142.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|46881022|gb|AAT04319.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 783

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|56459932|ref|YP_155213.1| hypothetical protein IL0824 [Idiomarina loihiensis L2TR]
 gi|56178942|gb|AAV81664.1| Single-stranded DNA-specific exonuclease [Idiomarina loihiensis
           L2TR]
          Length = 570

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 187/557 (33%), Positives = 287/557 (51%), Gaps = 17/557 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           P ++ ++   R V        L+     L+     L D  KA   +  A+ N  K+ I G
Sbjct: 22  PPLLRQIYARRGVRRADE---LSLKASGLLH-FSSLRDIGKAVELLQNALKNQAKVCICG 77

Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S ALM+  L    +      +P+R+ DGYG + +++E+   E  QLI+TVD 
Sbjct: 78  DFDADGATSSALMVSALQAFGLQQVGYRVPNRMTDGYGLSVAMVEQLAVENVQLIVTVDN 137

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G  ++DA+  A  +GI V+V DHH    E  PA A+VNPN+        +L   GV F V
Sbjct: 138 GIAAHDAIVLAREKGIQVLVTDHHLPPEELPPANAIVNPNQHGCEFSSKNLAGVGVAFYV 197

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           L+ +   LR+    PL  +L   LDLVAL TV DVVPL   NR  V +G+   R+    P
Sbjct: 198 LLALRSALREQGVEPL-PNLADWLDLVALGTVADVVPLDYNNRVLVQQGIARIRKGMSRP 256

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G+KAL+E  N   S + A +LG+ +GP INA GR+ +  LG   L++ +    + LA +L
Sbjct: 257 GIKALLEVANRDASQLAASDLGFALGPRINAAGRLDDIGLGIECLLAGE-TRAQQLAQQL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDI-QQASVIVVEGDRWHPGIVGLLAARLKEKFG 395
           + LNQ R+ +E+ M E AE+ V   C D  Q   ++ +    WH G++G++A R+KE+  
Sbjct: 316 NDLNQQRKSIETEMREHAESAVAKLCFDQGQVPDLVTLYQPDWHAGVIGIVAGRVKEQVN 375

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNF 453
           RP  A++ ++D    GS RS+ G  +  ++      + GI+ + GGHAMAAGLT+++ N 
Sbjct: 376 RPVIALANDDDEFLKGSARSVSGLHMRDLLERVHSLQPGIMERFGGHAMAAGLTMKKENL 435

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
            R  +  ++ A   +       VF  DG L  + +++  ++ L+SAGP+G   P P+F  
Sbjct: 436 TRFSELAEQVASEWLSEEQKQRVFWSDGELTTTQLSLDSVNTLQSAGPWGQQFPEPMFDG 495

Query: 514 PNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
              +L   R+V   HL++       E L AIAF V            +   + +     +
Sbjct: 496 Q-FELVDQRIVGERHLKLVVRHPQGELLDAIAFNVDTQQWP----ARQASVVELLYKPQL 550

Query: 574 NYWRGSKRCQLRVLDAS 590
           N++RG    QL V    
Sbjct: 551 NHFRGRTNVQLLVEQIR 567


>gi|227328399|ref|ZP_03832423.1| ssDNA exonuclease RecJ [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 587

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/573 (31%), Positives = 277/573 (48%), Gaps = 29/573 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+   R V        L  S+  L+ +  +L+  DKA   +   +     I+I 
Sbjct: 22  VPPLLRRLYAQRGVKGAQE---LERSLSGLL-NYRLLSGIDKAIDLLQHTLAEKRCIVIV 77

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L     VN    +P+R  +GYG +P ++ +    GA++I+TVD
Sbjct: 78  GDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVVAQAAALGAEVIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S+  ++ A  +GI V+V DHH        A A++NPN  D       L   GV F 
Sbjct: 138 NGISSHAGVEDAHRRGIAVLVTDHHLPGEILPAADAMINPNLPDCQFPSKALAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           +++ ++  LR  +               +L  LLDLVAL TV DVVPL   NR  V +GL
Sbjct: 198 LMMALFVRLRDSDWFTQPFFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 257

Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R     PG++AL+E  N   S + + +LG+ IGP +NA GR+ +  +G  LL+S+D 
Sbjct: 258 NRIRAGECRPGIRALLEVANRDASQLVSSDLGFAIGPRLNAAGRLDDMTVGVELLLSNDI 317

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385
            +  MLA  LD LNQ+RR +E  M  +A     + +    +    + +    WH G+VG+
Sbjct: 318 TQARMLANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGI 377

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443
           LA+R+KE+F RP  A +   DG   GSGRSI G  +   +        G++ K GGHAMA
Sbjct: 378 LASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMA 437

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502
           AGL++    F      F +     +       V   DG L    ++ ++  +ML  AGP+
Sbjct: 438 AGLSLHEDRFDDFRQRFGELVGEWLDPSQLEGVVWSDGELALPELDLLSTAEMLRYAGPW 497

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558
           G   P P F     ++   R++   HL+  FE   +      L  IAF V  T   +   
Sbjct: 498 GQAFPEPTFDGC-FRILQPRLLKERHLKAMFEPIGATGAVPLLDGIAFNVDTTIWPD--- 553

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               K + +   L +N +RG +  QL +    P
Sbjct: 554 -PSIKEVEMVYRLDINEFRGKRSVQLMIQHLWP 585


>gi|306825702|ref|ZP_07459041.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432063|gb|EFM35040.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 759

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/591 (29%), Positives = 281/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 25  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 82

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 83  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 142

Query: 135 YGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+ +A + G+DVIV DHH +      AYA
Sbjct: 143 YGPNTSVYKYFIEQEWISLIVTVDNGVAGHEAIDFAQSMGVDVIVTDHHSMPETLPDAYA 202

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 203 IVHPEHPDADYPFKCLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 252 VSLTDENRIMVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 311

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+A V        +  V V
Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKAMV------DPEKKVQV 365

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  ED +  GS RS+E  DI    +      
Sbjct: 366 LANEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDDRAKGSARSVEAVDI--FEALDPHRD 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVCEKGADASGKNKLNLDEELDLETLSLET 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   +  ++S R +    AHL++     D  + + +AF    
Sbjct: 483 VKSFERLAPFGMDNQKPVFYIRDFNVESARTMGAGNAHLKLKISKGD-ASFEVVAFGQGS 541

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 542 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 587


>gi|229495842|ref|ZP_04389568.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317155|gb|EEN83062.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           endodontalis ATCC 35406]
          Length = 581

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/585 (29%), Positives = 276/585 (47%), Gaps = 25/585 (4%)

Query: 17  RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +W+      E I+ +  +  +  +  +V R+LV R + + D A+ F +P +  L  DP +
Sbjct: 4   KWIWKPLTDEEISTSNELIAELKLAPVVGRLLVKRGIRTADEARHFFSPKLEDLH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRI 131
           + D DKA  RI +A+   E I+++GDYDVDG  +V+L+ +FL          + YIPDR 
Sbjct: 63  MKDMDKAVERINKALGKKENILVYGDYDVDGTTAVSLVYKFLRQSGCSDHQLHYYIPDRN 122

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            DGYG +   +++    G +LII +DCG  + + + YA + GID IV DHH        A
Sbjct: 123 DDGYGVSKQGIDRAHELGVKLIIVLDCGIKAIEEIAYAKSLGIDFIVCDHHTPDGVLPDA 182

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+++P R D+      L   G+ F ++          N       L SLLDLVA++   
Sbjct: 183 VAVLDPKRADNTYPFEELSGCGIGFKLMQAFA-----INNNIRMRRLYSLLDLVAVSIAS 237

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           DVV  +G NR     GL    R  +PGL+ +I   N  +  I   ++ + IGP INA GR
Sbjct: 238 DVVSTLGENRILAYFGLQQLNRNPSPGLRGIINICNLANEEIDMSSIVFKIGPMINASGR 297

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + +      LLIS D +E E   +++   N+ RR ++  +  +A   V  +    ++  +
Sbjct: 298 MMDGKKTVDLLISRDIEEAEEKCLEIVQYNEQRRELDKQITREAVRFV-EEFKPHKKYKI 356

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           IV+   +WH G++G++A+RL E++ RP   +S  E  K  GS RS  GFD+   +     
Sbjct: 357 IVIHKPQWHKGVIGIVASRLAEQYARPVVVLS-GEGDKVSGSARSYGGFDMYHAIEHC-- 413

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L   GGH  AAGLT+         +  Q +A   V A    P  +ID VL+   +  
Sbjct: 414 RDLLTNFGGHPYAAGLTLSEDKVEEFTERIQHYAEENVYAKQFNPEIEIDAVLSLVEITK 473

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVNLAHLQMTFESQDSETL----QAIA 545
           +L   L+  GP+G  NP P+F         + + V      +  E  DS  +      IA
Sbjct: 474 SLHKNLQKMGPFGPDNPKPIFMTRFLFDTGTSKAVGKNGEHIKLEMTDSPQMFQVKSGIA 533

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + +              +   +   +  N + G+   Q+ V D  
Sbjct: 534 YGLS----SHISYIKSYRPFSICYTVEENDYYGTSSIQILVKDIK 574


>gi|270293185|ref|ZP_06199396.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           M143]
 gi|270279164|gb|EFA25010.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           M143]
          Length = 744

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/591 (29%), Positives = 280/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 10  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI QAI   E I+I+GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 68  LHDMEKAVERIRQAIEEGENILIYGDYDADGMTSASIMKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A   G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIKQEGISLIVTVDNGVAGHEAIELAQAMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIGLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  E+G+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEEGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEKLSDLSQILEDYVREKGSDAGGKNKLNLDEELDLETLSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   +  ++S R +     HL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNTHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|257878184|ref|ZP_05657837.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,230,933]
 gi|257889618|ref|ZP_05669271.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,410]
 gi|257892441|ref|ZP_05672094.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,408]
 gi|260559230|ref|ZP_05831416.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           C68]
 gi|257812412|gb|EEV41170.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,230,933]
 gi|257825978|gb|EEV52604.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,410]
 gi|257828820|gb|EEV55427.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           1,231,408]
 gi|260074987|gb|EEW63303.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           C68]
          Length = 744

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/563 (30%), Positives = 272/563 (48%), Gaps = 30/563 (5%)

Query: 33  ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++  +   V ++L  R    +     FL+P  + L  DP ++ D DKA  RI +A+ +
Sbjct: 1   MIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPYLIHDMDKAISRIQEAVIS 59

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI+++GDYD DG  S  +M   L        +++P+R   GYGPN S+ ++ I EG Q
Sbjct: 60  GEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEHGYGPNQSVYQEKIEEGIQ 119

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           LIITVD G    DA+ YA   G+DVI+ DHH++      AYA+V+P           L  
Sbjct: 120 LIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYAIVHPRHPAGHYPFPDLAG 179

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
            GV F V   +                   LDLVA+ T+ D+V L   NR  V  G+   
Sbjct: 180 VGVAFKVASALLEE-----------PPAEFLDLVAIGTIADLVSLTDENRILVSLGIDAI 228

Query: 272 RRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                 GL+AL E   +      E  +G+ I P +NA GR+G+      LL + D +E  
Sbjct: 229 HHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEAS 288

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           + A KL+ +N+ R+ +   + ++A A V  +        + ++    WH G++G++A ++
Sbjct: 289 VQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHLLVNRGWHEGVLGIVAGKI 342

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             + G+P+  ++ +EDG   GSGRSIE  ++           +    GGH  A GLT+  
Sbjct: 343 MNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRDLFTYFGGHHAAVGLTMPS 400

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N   L +   ++  +    L+  P  +ID VL  + V +  ID L+   P+G  NP P 
Sbjct: 401 ENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQ 460

Query: 511 FAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F F   + ++I+ +     HL+       S+ L A+AF  +GT   E L      ++ V 
Sbjct: 461 FLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FGTQEEELLNN----QVDVV 514

Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591
           G L +N W G K+ QL V D S 
Sbjct: 515 GKLSINEWNGRKKPQLMVSDFSV 537


>gi|119486080|ref|ZP_01620142.1| single-stranded-DNA-specific exonuclease [Lyngbya sp. PCC 8106]
 gi|119456855|gb|EAW37983.1| single-stranded-DNA-specific exonuclease [Lyngbya sp. PCC 8106]
          Length = 708

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/619 (26%), Positives = 281/619 (45%), Gaps = 57/619 (9%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
           +   RW  +  Q    +A  + +   +  ++A+VL+NR     + A  FL+P  + L   
Sbjct: 15  LPNQRWHLVPPQP--EKAQQLAEATQLSPLLAQVLINRGFDTVEEAVIFLDPETQALPAP 72

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
              L D  K+   +  AI   +KI I GDYD DG  S AL++R LS    + +  IP R+
Sbjct: 73  INELPDLAKSVEFLHDAILQHQKIAICGDYDADGMTSTALLIRALSSLGADVSYAIPSRM 132

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++E F  EG +L++TVD G ++Y+ +  A   G+ VI+ DHH +     PA
Sbjct: 133 KEGYGINNRIIEDFHQEGIRLVLTVDNGISAYEPIAKARELGLTVIITDHHDLPPLLPPA 192

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A++NP  + + S    L   GV +++ + + + + +     +   +  LL+L  L T+ 
Sbjct: 193 HAILNPKLIPETSPYRGLAGVGVAYVLAISLAQKMGK-----VQGLVNPLLELFTLGTIA 247

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--------------------ISSP 291
           D+  L G+NR +V +GL         G++ALIE                           
Sbjct: 248 DLAALTGVNRRWVKRGLQRLMSSQIEGVQALIEVAGLSGSQVSESSKTEEIEGNRKNFKT 307

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           I  E++G+ +GP INA GRI +  +   LL +++       AM+ + +NQ R+ +   + 
Sbjct: 308 IKPEDIGFRLGPRINAVGRIADPQIVIELLTTENMGIALERAMQCEQINQQRQQLCEQIE 367

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-------- 403
           ++A A       D  +  V+V+    WH G++G++A+RL E++G P F  ++        
Sbjct: 368 QEAIAWCENSNIDFTKERVLVIVQPEWHHGVIGIVASRLVERYGVPVFIGTYETEKENED 427

Query: 404 ----EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
               +      GS R I  F++ + + +     +L K GGH  A G + +  N  +    
Sbjct: 428 NSSEKPAPMIRGSARGIPEFNVFEALQYC--TDLLGKFGGHKAAGGFSFQAENLDQFRQR 485

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
             +FAH  +      PV K+D   N   +N  L   ++   P G  N  P+F  PN ++ 
Sbjct: 486 LSQFAHQCLEIEHLKPVVKVDVQANLKQINFELYHQIDQLHPCGIENDPPIFWTPNVRIV 545

Query: 520 SIRVVNLAHLQMTFESQDSE--------TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
             + V   H+++T               TL+AIA+R                ++ +   L
Sbjct: 546 KQKTVGKGHIKLTLSQDSRSDHKIAALPTLEAIAWRWEDYF-------PLPTQLDIAYKL 598

Query: 572 CVNYWRGSKRCQLRVLDAS 590
             N W+G    +L ++   
Sbjct: 599 RTNDWQGQTSLELEIVGVR 617


>gi|238917314|ref|YP_002930831.1| single-stranded-DNA-specific exonuclease [Eubacterium eligens ATCC
           27750]
 gi|238872674|gb|ACR72384.1| single-stranded-DNA-specific exonuclease [Eubacterium eligens ATCC
           27750]
          Length = 571

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/587 (29%), Positives = 290/587 (49%), Gaps = 34/587 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
            W     +       AI ++  I  ++AR++ NR + + +    +LN ++   M  P +L
Sbjct: 4   NWKVYTKKADF---KAIGERFGIDQVMARIIRNRGLETDEQINMYLNGTVDD-MHSPHLL 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DK    +   I+  +KI I GDYD+DG  S  ++ + L     +    +PDRI+DGY
Sbjct: 60  KDADKCVDILTDKIHAGKKIHIIGDYDIDGICSTTILYKGLKAAGADVTFAVPDRIIDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190
           G N  L+++  N G   IIT D G  + + ++YA  +G+ VIV DHH +  + +      
Sbjct: 120 GINEHLIDEAYNNGTDTIITCDNGIAAIEQIKYAKEKGMTVIVTDHHDIPFDFVDGEKIH 179

Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+VNP + D       LC AGV F V+ ++Y  L  +       DL    +L+A
Sbjct: 180 KVPQADAIVNPKQEDCPYPFDKLCGAGVAFKVIKILYERLGLN-----PIDLEEYAELMA 234

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +AT+ DVV L   NR  V  GL       N G++AL+E   +    I++ ++G++IGP +
Sbjct: 235 IATIGDVVDLSDENRVIVKYGLKHLAVTSNIGIRALVEACELEIDKISSYHIGFVIGPCL 294

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL++ D ++    A++L  LN  R+ +       A  +V  +  ++
Sbjct: 295 NATGRLDSARRAIELLLTTDMEDARKKALELRTLNVERKDITEEYAAIAIEQV--ENTEL 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +   V+VV     H  + G++A R++EKF RPS  I+  EDG   GSGRSIEG+++ + +
Sbjct: 353 KDDKVLVVYLPECHESVAGIIAGRVREKFYRPSIVITKAEDG-AKGSGRSIEGYNMFEEI 411

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           S      +L K GGH MAAG++++            +  +  +   + TP   ID  +  
Sbjct: 412 SKC--GKLLNKYGGHPMAAGISLDIDKIDEFRKALNE--NQTMTENVLTPTVWIDVPMPV 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             V+I LI   E   P+G GN  PVFA  N  ++   V+      L+   ES+  + + A
Sbjct: 468 DYVDIKLIKQFEKLQPFGKGNEKPVFADRNLTVRQSAVIGKNKNVLRCQLESEHGKLVTA 527

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F++ G  + E      G+++ +  +  +N + G    Q R+ D  
Sbjct: 528 IRFKLDGQEIPEV-----GRKISMVYYPDINEYNGIVSIQFRIEDWR 569


>gi|322374747|ref|ZP_08049261.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           C300]
 gi|321280247|gb|EFX57286.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           C300]
          Length = 743

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 10  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPNAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIRKKGADASGKNKLNLDEELDLETLSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   +  ++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|296107040|ref|YP_003618740.1| single-stranded-DNA-specific exonuclease [Legionella pneumophila
           2300/99 Alcoy]
 gi|295648941|gb|ADG24788.1| single-stranded-DNA-specific exonuclease [Legionella pneumophila
           2300/99 Alcoy]
          Length = 579

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/570 (31%), Positives = 279/570 (48%), Gaps = 23/570 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ + R +S +     L+  ++ L+P    L   ++A  R+  A+ + ++I+I
Sbjct: 17  NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R   GYG  P+++E        LIITV
Sbjct: 73  IGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S++ +  A   GIDV++ DHH        A A+VNPN+   L     +   GV+F
Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ + R L   N          ++ S LDLVAL TV DVV L   NR  V +G+M  R
Sbjct: 193 YVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           + Q   G+KALIE      S +   +LG+ I P +NA GR+ + +LG   LI+ D +   
Sbjct: 253 QGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386
               +LD LN  RR +ES M EQA   +     + ++       + +    WH G++G+L
Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKTWHQGVIGIL 372

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A R+KEK+ RP  A +   + +  GS RS+   +I  +++       G+++K GGHAMAA
Sbjct: 373 AGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GL++           F       +           DG L +  +N+    +++ AGP+G 
Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELNLETAQLIQQAGPWGQ 492

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
               PVF     ++   R+V   HL+MT   SQ  E L AIAF V            R K
Sbjct: 493 AFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWP----NHRIK 547

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            +H    L +N+++G  R QL +   +PV+
Sbjct: 548 YVHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577


>gi|197334470|ref|YP_002155206.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio fischeri
           MJ11]
 gi|197315960|gb|ACH65407.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio fischeri
           MJ11]
          Length = 579

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/571 (30%), Positives = 283/571 (49%), Gaps = 25/571 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+   R ++       L    + L+     +    KA   +V+AI N  +I++
Sbjct: 18  SIPPILQRIYAARGITSS---SQLERGAKFLL-SFQSMHGISKAVDILVEAIQNQTRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +         N +  +P+R  DGYG +P ++++    GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVMAFRMMGSQNVDYLVPNRFEDGYGLSPDVVDQAKEMGAEIIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH   +    A A+VNPN          L   GV F
Sbjct: 134 DNGVSSIDGVLKAKEYGMQVVVTDHHLPGAHLPLADAIVNPNLEACAFPSKSLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ I   LR+ N          +L  LLDLVAL TV D+V L   NR  V +G+   R
Sbjct: 194 YLMLAIRARLREINWFEKQNIAIPNLADLLDLVALGTVADLVALDENNRILVHQGIQRIR 253

Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++ALIE  N   S I A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKCRPGIQALIEVANRVPSRIVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLE--QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M E   A  + L      +    +V+    WH G++G+LA+
Sbjct: 314 RMAAELDSLNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DG   GS RSI GF +   +        G+++K GGHAMAAGL
Sbjct: 374 RIKEKYHRPVIAFADGGDGFIKGSCRSIAGFHMRDALDLIDTRNPGLILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  ++ +    F       V       +   DG L      +   +++ + GP+G   
Sbjct: 434 TIKETDYKKFSQAFDDVVRESVEEEALKGIVLSDGALTPEEFTLGTAEIIRAGGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+ + R+V   HL++  E        ++ + AIAF +      +    + 
Sbjct: 494 PEPIFDGE-FKVLNQRLVGEKHLKLMLEPIHRDFPTNKMVDAIAFNIDVRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +++ +   L +N +RG++  QL V +  P+
Sbjct: 549 VQKVKLAYRLDINEFRGNQTLQLMVENIEPL 579


>gi|296876220|ref|ZP_06900273.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432725|gb|EFH18519.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parasanguinis ATCC 15912]
          Length = 741

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W            LA+ +K  +   VA +L  R + + +  +DFL P +  L  DP
Sbjct: 4   SKYDWQLASPSAD-EAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI +AI + E+I+I+GDYD DG  S ++M   L        +Y+P+R  
Sbjct: 62  YLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G     A+  A   G+DVIV DHH +      A
Sbjct: 122 DGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P   D      +L   GV F +   +   +            + LLDLVA+ T+ 
Sbjct: 182 YAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVP-----------VDLLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL V +     GL+ L+E   I    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ +   N+ R+ +  A+ ++A+  V          S 
Sbjct: 291 LDDPNPAIELLTGFDDEEAHEIAIMIHQKNEERKEIVQAIYDEAKTMV------DPSLSA 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   +S  EDG+  GS RS E  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVVVLS-IEDGRAKGSARSPESVNI--FEALDPY 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + +  GGHA AAG+T+E      L      F       L +     ID  L+ + + +
Sbjct: 402 RSLFIAFGGHAGAAGMTLEVDQLPALSQALTDFIAEQEIDLSSKSSLDIDEELHLTELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   +   P+G  N  PVF   N K++  R +     HL++    +D  T + +AF +
Sbjct: 462 ETLKSFDRLSPFGMDNKKPVFLVRNFKVEGARSMGAGNTHLKLKISQED-ATFEVVAFGL 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ + + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSLEA----EFAQAQDLELAVQLSVNQWNGQTTLQLMLVDARVDGVQLFNVR 568


>gi|326406133|gb|ADZ63204.1| single-stranded-DNA-specific exonuclease [Lactococcus lactis subsp.
           lactis CV56]
          Length = 742

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/579 (29%), Positives = 269/579 (46%), Gaps = 34/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           + W            L I +KH + ++ +RVL  R +  +   + FL PS+  L  DP +
Sbjct: 6   YDWKVADT-AISEDFLKIAKKHKLDELTSRVLYQRGIHAEAEIEQFLKPSLENLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI+ AI   E I+I+GDYD DG  + ++M   L      A +Y+P+R  DG
Sbjct: 64  LHDMEKATGRILSAIEQGENILIYGDYDADGMTASSVMKSALDELGAEAQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN  + + +I      LIITVD G    +A+ +A   G+DVIV DHH +  +  PAYA
Sbjct: 124 YGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPPAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F V   +                  +LDLVA+ T+ D+
Sbjct: 184 IVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAP-----------SEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V  +    GL+ L++   +    IT E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D  E   +A  +D  N  R+ +   +  +A + +  +        V +
Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDE-------PVQI 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A RL E   +P   ++ +EDG   GS RSIE FDI    +      
Sbjct: 346 LYHKDWHKGVLGIVAGRLLEAIHKPVIMLA-QEDGILRGSARSIENFDI--FKALNAHRE 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAG+T+   N   +      +  +    +      +I    +   ++++ 
Sbjct: 403 LFIAFGGHKQAAGMTLSLENVEAVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLST 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           I  L    P+G  NP P F   ++K+   R +     HL++  + ++ + + A+ F+   
Sbjct: 463 ITNLAKLAPFGMDNPKPRFLIEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L     Q++     +   L  N W G+   QL + DA
Sbjct: 522 EELEFEQAQTK-----LVATLSSNSWNGNTSLQLMIEDA 555


>gi|288905018|ref|YP_003430240.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           gallolyticus UCN34]
 gi|288731744|emb|CBI13305.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           gallolyticus UCN34]
          Length = 735

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/593 (29%), Positives = 287/593 (48%), Gaps = 34/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S + W ++      N    +T+K  + ++ +++L +R V   +    FL+  +  L  DP
Sbjct: 4   SKYNWKNIEKGPD-NGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S ++M   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVERIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A+ YA +QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQSQGVDVIVTDHHGLPAELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P   +      +L   GV F V   +   +              +LDLVA+ T+ 
Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL  L++  ++    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELMKVSDVDMADVNEETVGFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A  ++  N+ R+ +   + ++A + V  +        V
Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQEIFDEAMSMVDLE------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGLAKGSARSIEAINI--FHALDEH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+    GGHA AAG+T+   N  +L      +       L       ID VL  S +++
Sbjct: 402 RGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE   P+G  NP PVF   +  ++  R +     HL++   +Q +  +  +AF  
Sbjct: 462 DTVHSLEKLEPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                       + + + +   L +N W G    QL + DA  VEG      +
Sbjct: 521 GHL----AQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568


>gi|326387430|ref|ZP_08209039.1| single-stranded-DNA-specific exonuclease RecJ [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208086|gb|EGD58894.1| single-stranded-DNA-specific exonuclease RecJ [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 592

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 236/590 (40%), Positives = 329/590 (55%), Gaps = 15/590 (2%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68
           ++ S+SG  W    G   +             ++V ++L+ R V          P++R  
Sbjct: 7   IDQSLSGQAWRWRGGNMDVAADNP--GNLG-DNLVDQLLLARGVERSDLDRHRRPTLRDF 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +PDP I  D DKAA R+  AI  +E I ++GDYDVDGA S AL++R L+ C V A  YIP
Sbjct: 64  LPDPSIFRDMDKAATRLADAIGRNEAIAVYGDYDVDGATSAALLVRLLASCGVRARPYIP 123

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           DR+++GYGP    + +   EGA LI+TVDCG+ +Y+AL  A + G++VIV+DHH+  +E 
Sbjct: 124 DRLLEGYGPTGEALVRLGAEGASLIVTVDCGAMAYEALAMAADAGVEVIVVDHHKCAAEL 183

Query: 189 IPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243
             A ALVNPNRLD+       GHL A G+ FL+ V   R LR           DL+SLLD
Sbjct: 184 PRAMALVNPNRLDESDEAAAFGHLAAVGMAFLLAVATLRELRARGFFGDRRPPDLMSLLD 243

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVAL TV DV  L GLNRA V +GL V  R+ N GL ALI+   ++   T  +LG+ +GP
Sbjct: 244 LVALGTVADVAQLRGLNRALVAQGLKVLARRENTGLAALIDASRLNRSPTCSDLGFALGP 303

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GRIG+S+LG RLL + D  E   +A +L  LN  RR +E A+ E AE  +  Q  
Sbjct: 304 RINAAGRIGDSSLGVRLLTTADPDEARDIAARLSELNDERRGIEQAVQEAAETALARQ-- 361

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS--FEEDGKGIGSGRSIEGFDI 421
             +  +V V+ G+ WHPG++G++A R+KEK G+P+  I+   +E G G GSGRSI G D+
Sbjct: 362 --EGRAVHVLSGEGWHPGVIGIVAGRIKEKTGKPTVVIALDADEAGNGKGSGRSIAGVDL 419

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  V  A E G+LV GGGHAMA GLT+          F ++     V          ID 
Sbjct: 420 GAAVIAAREAGLLVAGGGHAMACGLTIAPDRLEEFHTFLEERLTRDVARARAAQTLLIDL 479

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L    +   L++ L++AGP+G G P P  A    +L    +V   H++M    +D  + 
Sbjct: 480 SLTPGGLTPDLVETLDAAGPFGVGWPGPRVAVGPVRLIKCDLVGTDHVRMVAAGRDGRSF 539

Query: 542 QAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +AIAFR   T LG+ L+    G+   + G   ++ W      +L V DA+
Sbjct: 540 KAIAFRAATTDLGQALLHGYHGRHFWLAGRARIDDWASRPAAELHVEDAA 589


>gi|87200288|ref|YP_497545.1| single-stranded-DNA-specific exonuclease RecJ [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135969|gb|ABD26711.1| exonuclease RecJ [Novosphingobium aromaticivorans DSM 12444]
          Length = 573

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 237/559 (42%), Positives = 334/559 (59%), Gaps = 12/559 (2%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
            DIV ++L++R V  +       P++R  +PDP I  D D AARR+  AI + E+I I+G
Sbjct: 16  DDIVTQLLLSRGVGREDLDRHRRPTLRDFLPDPSIFQDMDNAARRLTDAILSGERITIYG 75

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYDVDGA S AL++R L    V+A  YIPDR+++GYGP+   + +   EG+ LI+TVDCG
Sbjct: 76  DYDVDGATSAALLIRLLRELGVDAGHYIPDRLLEGYGPSGEALVRLAREGSNLIVTVDCG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG---QGHLCAAGVVF 216
           + +++AL  A  +G+DVIV+DHH+   E   A ALVNPNRLD+       GHL A GV F
Sbjct: 136 AMAHEALAAAAAEGVDVIVVDHHKCAPELPRAAALVNPNRLDECDEAAAHGHLAAVGVAF 195

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           L+ V   R LR           DL++LLDLVAL TV DV  L GLNRA V +GL +  R+
Sbjct: 196 LLAVATVRELRGRGFFDGRKAPDLMALLDLVALGTVADVAQLKGLNRALVSQGLKIMARR 255

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            N GL ALI+   +S   T  +LG+ +GP INAGGR+GE+ LG RLL ++D +E   ++ 
Sbjct: 256 ENVGLSALIDASRLSRAPTCSDLGFALGPRINAGGRVGEATLGVRLLTTEDPEEARAISA 315

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           +L  LN  RR +E A+ E AEA+V  Q       +V+V+ G  WHPG++G++A R+KEK 
Sbjct: 316 QLSRLNDERRAIEQAVQEAAEAQVDAQ----HNRAVMVLAGSGWHPGVIGIVAGRIKEKT 371

Query: 395 GRPSFAIS--FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452
           G+P+  I+   +E G G GSGRSI G D+G  +  A E G+LV GGGHAMA GLT+E   
Sbjct: 372 GKPTLVIALDADEAGHGKGSGRSISGVDLGAAIIAAREAGLLVAGGGHAMACGLTIEPSA 431

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
             RL D+  +     V A  ++    +D  L+   +   L++ LE+AGP+G G P P  A
Sbjct: 432 LSRLADWLDERLSRDVTAAQSSQALLLDLSLSPGGLTPDLVETLEAAGPFGVGWPGPRVA 491

Query: 513 FPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHL 571
               +L    +V   H++M     D  + +AIAFR   + LG+ L+  SRG++  + G  
Sbjct: 492 VGPVRLVKCDLVGTDHVRMVAAGADGRSFKAIAFRAAQSELGQVLLNASRGRQFWLAGRA 551

Query: 572 CVNYWRGSKRCQLRVLDAS 590
            ++ W      +L V DA+
Sbjct: 552 RIDDWASRPAAELHVEDAA 570


>gi|254931460|ref|ZP_05264819.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes HPB2262]
 gi|293583012|gb|EFF95044.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes HPB2262]
 gi|328474886|gb|EGF45686.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes 220]
 gi|332311967|gb|EGJ25062.1| Single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes str. Scott A]
          Length = 783

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEGAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F 
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572


>gi|59711057|ref|YP_203833.1| ssDNA exonuclease RecJ [Vibrio fischeri ES114]
 gi|59479158|gb|AAW84945.1| ssDNA exonuclease, 5' --> 3'-specific [Vibrio fischeri ES114]
          Length = 579

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/571 (30%), Positives = 282/571 (49%), Gaps = 25/571 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +IP I+ R+   R ++       L    + L+     +    KA   +V+AI    +I++
Sbjct: 18  SIPPILQRIYAARGITSS---SQLERGAKFLL-SFQSMHGISKAVDILVEAIQKQTRIIV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +         N +  +P+R  DGYG +P ++++    GA++I+TV
Sbjct: 74  VGDFDADGATSSALSVMAFRMMGSQNVDYLVPNRFEDGYGLSPDVVDQAKEMGAEIIMTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH   +    A A+VNPN          L   GV F
Sbjct: 134 DNGVSSIDGVLKAKEYGMQVVVTDHHLPGAHLPLADAIVNPNLEACAFPSKSLAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ I   LR+ N          +L  LLDLVAL TV D+V L   NR  V +G+   R
Sbjct: 194 YLMLAIRARLREINWFEKQNIAIPNLADLLDLVALGTVADLVALDENNRILVHQGIQRIR 253

Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG++ALIE  N   S I A + G+ +GP INA GR+ + + G  LL+S++     
Sbjct: 254 AGKCRPGIQALIEVANRVPSRIVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLE--QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            +A +LD LNQ R+ +E  M E   A  + L      +    +V+    WH G++G+LA+
Sbjct: 314 RMAAELDSLNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQRDWHQGVIGILAS 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R+KEK+ RP  A +   DG   GS RSI GF +   +        G+++K GGHAMAAGL
Sbjct: 374 RIKEKYHRPVIAFADGGDGFIKGSCRSIAGFHMRDALDLIDTRNPGLILKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  ++ +    F       V       +   DG L      +   +++ + GP+G   
Sbjct: 434 TIKEADYKKFSQAFDDVVRESVEEEALKGIILSDGALTPEEFTLGTAEIIRAGGPWGQAF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561
           P P+F     K+ + R+V   HL++  E        ++ + AIAF +      +    + 
Sbjct: 494 PEPIFDGE-FKVLNQRLVGEKHLKLMLEPIHRDFPTNKMVDAIAFNIDVRRWPD----AS 548

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +++ +   L +N +RG++  QL V +  P+
Sbjct: 549 VQKVKLAYRLDINEFRGNQTLQLMVENIEPL 579


>gi|116495040|ref|YP_806774.1| single-stranded DNA-specific exonuclease [Lactobacillus casei ATCC
           334]
 gi|227534949|ref|ZP_03964998.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|116105190|gb|ABJ70332.1| exonuclease RecJ [Lactobacillus casei ATCC 334]
 gi|227187406|gb|EEI67473.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 764

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/592 (28%), Positives = 282/592 (47%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           + ++W     Q       A+++   +P  +A +L+ R ++       F++P    L  DP
Sbjct: 2   TQYQWQLAP-QPAAADEHALSETLNVPPFLATLLLQRGINDQADYDAFVHPDTSRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI  +EKI I+GDYDVDG  S A+M+  L     + +++IPDR  
Sbjct: 60  FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G      +  A   G+DV+V DHH++ ++   A 
Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + + + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E  G+P+  ++  +DG+   GSGRSIE + + K +  A E
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              +V  GGH MA GLT +  +   +    +  A  ++   +  P   I   L  + + +
Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPITTRLEDADLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
               ++    P+G GNP PVF+     +Q+++ +     HL+   +      +  I F  
Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQVIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      +  + + +   L  N W+G    QL + D    +      +
Sbjct: 520 GDA----AETLATAQAVKLAVQLDQNTWQGHTSLQLMLKDYEVKQPQVIDWR 567


>gi|78188581|ref|YP_378919.1| RecJ exonuclease [Chlorobium chlorochromatii CaD3]
 gi|78170780|gb|ABB27876.1| exonuclease RecJ [Chlorobium chlorochromatii CaD3]
          Length = 568

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/579 (29%), Positives = 273/579 (47%), Gaps = 19/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           +RW   +  E      A+++   +   +AR L NR +S  + AK+F  P +  L   P +
Sbjct: 4   YRWKCFMPHE--ETVAALSESINVSQPIARALCNRGISTYNEAKEFFRPVLSTLH-SPWL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D ++A  R+V+A+ N E I+++GDYDVDG   VAL++ FL H  V    +I DR  +G
Sbjct: 61  FNDMERAVERLVRALKNGETILLYGDYDVDGTTGVALLLLFLRHHGVEPLWHINDRFAEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +P  +++ I  G  L+ITVDCG   + A++     G++VIV DHH+       AYA+
Sbjct: 121 YGLSPEGIDRVIASGTTLLITVDCGIKDHAAIRRCGEHGVEVIVCDHHEA-DVTPEAYAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP  +        LC   V F ++  +   L     V         LDLVA+AT  D+V
Sbjct: 180 LNPKVVGSGYPFRELCGCAVAFKLVQALAERLGDSEAVWH-----QFLDLVAVATAADLV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V++GL   R +       +   + +S   +   +L + I P INA GR+  
Sbjct: 235 SLTGENRTLVIEGLQQMRSKPRKNFSEMFRVMKVSLGDVRMFHLAFGIAPRINAAGRMHS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++L    L++     +E     L+ +N  RR ++S ++ QA+  V + C      S IV+
Sbjct: 295 AHLALEWLLASAPDAVEQHTEALERVNVQRRSLDSTIMSQADKMVESHCASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A++L +K+  P+  +     G   GS RSIEG +I  ++        
Sbjct: 353 YDEAWHLGVLGIVASKLIDKYYLPTVVLGGMN-GLVRGSVRSIEGLNIHAVLQHC--SHH 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT++  N       F +   N +       V +ID V+    +    I
Sbjct: 410 LEQFGGHHQAAGLTLKPENLAVFRKAFDEQCANQLTIEQRQKVMEIDAVVELEQITDKFI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            +LE   PYG GN  P+F     +L    R++   H++     +     + I F      
Sbjct: 470 AVLEQFAPYGIGNREPLFMSERLQLAEPARLLKERHVKFAVRDKQKRRFEVIGFNRPD-- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L   +   + +   +    W G  + QL + D   
Sbjct: 528 IYNDLRAVKHPTITMLYTIERRQWNGMWQVQLLLKDLEV 566


>gi|307710651|ref|ZP_07647084.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           SK564]
 gi|307618594|gb|EFN97737.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           SK564]
          Length = 740

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +   +  K FL PS+  L  DP +
Sbjct: 6   YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  R+ QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERVRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEILPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPVIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADATGKNKLNLDEELDLERLSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|15672614|ref|NP_266788.1| single-stranded DNA specific exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12723535|gb|AAK04730.1|AE006296_4 single-stranded DNA specific exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 742

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/579 (29%), Positives = 269/579 (46%), Gaps = 34/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           + W            L I +KH + ++ +RVL  R +  +   + FL PS+  L  DP +
Sbjct: 6   YDWKVADT-AISEDFLKIAKKHKLDELTSRVLYQRGIHAEAEIEQFLKPSLENLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI+ AI   E I+I+GDYD DG  + ++M   L      A +Y+P+R  DG
Sbjct: 64  LHDMEKATGRILSAIEQGENILIYGDYDADGMTASSVMKSALDELGAEAQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN  + + +I      LIITVD G    +A+ +A   G+DVIV DHH +  +  PAYA
Sbjct: 124 YGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPPAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F V   +                  +LDLVA+ T+ D+
Sbjct: 184 IVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAP-----------SEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V  +    GL+ L++   +    IT E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D  E   +A  +D  N  R+ +   +  +A + +  +        V +
Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDE-------PVQI 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A RL E   +P   ++ +EDG   GS RSIE FDI    +      
Sbjct: 346 LYHKDWHKGVLGIVAGRLLEAIHKPVIMLA-QEDGILRGSARSIENFDI--FKALNAHRE 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAG+T+   N   +      +  +    +      +I    +   ++++ 
Sbjct: 403 LFIAFGGHKQAAGMTLSLENVEAVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLST 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           I  L    P+G  NP P F   ++K+   R +     HL++  + ++ + + A+ F+   
Sbjct: 463 ITNLAKLAPFGMDNPKPRFLIEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L     Q++     +   L  N W G+   QL + DA
Sbjct: 522 EELEFEQAQTK-----LVATLSSNSWNGNTSLQLMIEDA 555


>gi|16800628|ref|NP_470896.1| hypothetical protein lin1560 [Listeria innocua Clip11262]
 gi|16414047|emb|CAC96791.1| lin1560 [Listeria innocua Clip11262]
          Length = 783

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/593 (30%), Positives = 292/593 (49%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W     +    +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNI--EEASDEKASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLLAEMDLAVARIKQAIDLNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPDAI 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRENANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +   + + A A +  +       ++I
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQVVVDVTKLAMAAIEAK---ESLGNII 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS+E F + +       
Sbjct: 347 VVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDPVTGVAKGSGRSVEAFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L +  Q+ A   +      P  KI+  +N + +++
Sbjct: 405 RSLMTAFGGHPMAAGLTLPAENLAELDNKLQEEAS-HLSDEDFRPALKIEEKINLADISV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           + I  LE   P+G  NP P+F      L+  + +     HL+    ++DS+ TL AI F 
Sbjct: 464 SFIAQLEKLAPFGMDNPKPIFLLEEMNLKGTKRIGADKTHLKTMLANEDSDVTLDAIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPHAAVDVVGELSINEWNNIKKPQLRMMDIHIPHWQLFDVR 572


>gi|306831091|ref|ZP_07464252.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426657|gb|EFM29768.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 735

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/593 (29%), Positives = 288/593 (48%), Gaps = 34/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S + W ++  +   N    +T+K  + ++ +++L +R V   +    FL+  +  L  DP
Sbjct: 4   SKYNWKNIEKEPD-NGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S ++M   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVERIRQAIENYEQILVYGDYDADGMTSASIMKEALEILGAEAQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A+ YA +QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQSQGVDVIVTDHHGLPAELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P   +      +L   GV F V   +   +              +LDLVA+ T+ 
Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL  L++  ++    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A  ++  N+ R+ +   + E+A + V  +        V
Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQKIFEEAMSMVDLE------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGLAKGSARSIEAINI--FHALDEH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+    GGHA AAG+T+   N  +L      +       L       ID VL  S +++
Sbjct: 402 RGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE   P+G  NP PVF   +  ++  R +     HL++   +Q +  +  +AF  
Sbjct: 462 DTVHSLEKLAPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                       + + + +   L +N W G    QL + DA  VEG      +
Sbjct: 521 GHL----AQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568


>gi|332705338|ref|ZP_08425416.1| exonuclease RecJ [Lyngbya majuscula 3L]
 gi|332355698|gb|EGJ35160.1| exonuclease RecJ [Lyngbya majuscula 3L]
          Length = 687

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/584 (29%), Positives = 291/584 (49%), Gaps = 21/584 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW     +    +A  + Q   I  ++A++L+NR + + + A+ FLNP +  +MP 
Sbjct: 30  LPNQRWEIAPLK--TEQADQLAQARGISPLIAQLLINRGIETSEQAEVFLNP-LSQVMPA 86

Query: 72  P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P     D   +   + +AI N EKI I GDYD DG  S AL++R L     + +  IP R
Sbjct: 87  PIDEFPDLAISVGMLTEAIANQEKIAICGDYDADGMTSTALLLRALRWLGADVDYAIPSR 146

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N  ++E+F  EG  +I+TVD G  +++ +  A   GI VIV DHH +  E   
Sbjct: 147 MTEGYGINTRIVEEFAEEGVGVILTVDNGIAAHEPIARAVELGITVIVTDHHDLPPELPD 206

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP +L + S    L   G+ +++ + + + L Q   +        LL+L  L T+
Sbjct: 207 ADAILNPKQLPEESPYRSLAGVGIAYILAICLAQELGQLKGLTQ-----QLLELFTLGTI 261

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---ITAENLGYMIGPSINA 307
            D+ PL G+NR ++ +GL +  +    G++ALIE   +      +  E++G+ +GP INA
Sbjct: 262 ADLAPLTGINRRWLKRGLGLLPQSQLAGVQALIEITGVKDDQKSLKPEDIGFRLGPRINA 321

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+ +  +   LL +   +     AM+ + +NQ R+ + + + + A A +     D QQ
Sbjct: 322 IGRLSDPQIVIELLTTTAPEVARERAMQCEQVNQRRQQLCADIEQDAIAFIEDTGLDWQQ 381

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+V+    WH G++G++A+RL E++G P F  ++E++ +    G +    +     + 
Sbjct: 382 KRVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYEDNDQQHIRGSARGITEFNIFEAL 441

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +L K GGH  A G ++   N          FAH  +      P+  ID  L  S 
Sbjct: 442 EFCKDLLGKYGGHKAAGGFSLPAENLSAFEQSLSGFAHQSLKPEHLKPLVSIDASLEFSQ 501

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAF 546
           +   L   L+   P G GN +PVF   N ++   RVV   H+++T    +   T+QAIA+
Sbjct: 502 ITSNLYQQLDLLHPCGIGNRDPVFWSANVQILEQRVVGKGHIKLTLNQDNQPVTIQAIAW 561

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           R      GE+      +R+ +   L  ++W G+   +L ++   
Sbjct: 562 R-----WGEYF--PLPRRVDIAYKLREHHWEGNTTIELELVGVR 598


>gi|168208767|ref|ZP_02634392.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713021|gb|EDT25203.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens B str. ATCC 3626]
          Length = 592

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/603 (29%), Positives = 301/603 (49%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  DP ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I + 
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +S   E  ++ K GGH MAAGL+VE  N   L     +     +      P  +ID  L 
Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRSMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGSKVEEFKEDFANKYGEEELLRVLDGGNCSFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|304436592|ref|ZP_07396561.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370288|gb|EFM23944.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 671

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/597 (28%), Positives = 292/597 (48%), Gaps = 34/597 (5%)

Query: 17  RWVSLLGQEGINRA--------LAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRL 67
           RW                     A+  +  +  I+ ++L  R + + + A+ FL+P+   
Sbjct: 2   RWEEEEKNVLKEWIVAQHTDEGDALAAEIGVTSIIGQLLWQRGIRTAEEARAFLHPA-DT 60

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
              DP ++ D ++ A R++ A+   E I+I+GDYDVDG  + AL+MR +     N + YI
Sbjct: 61  PFHDPFLMADMERGAERVLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLGGNVSYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG N   +++   EG +L++TVDCG  S D +  A   G+D+++ DHH     
Sbjct: 121 PNRFTEGYGLNADALQQIAGEGCRLLVTVDCGIASVDTVAEAAG-GMDIVITDHHLPGQM 179

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
             PAYA++NP+R D    + +L   GV F ++  ++++ R+++           LD+ AL
Sbjct: 180 LPPAYAVMNPHRADCAYPEKNLAGVGVAFKLVQALWQMERKESF-------AEYLDIAAL 232

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306
            TV D+VPL+G NR  V  GL         G++ALIE        I    +G+ + P +N
Sbjct: 233 GTVADLVPLVGENRKIVQMGLRQMAEHPCVGIRALIEVAGLADKSINTGQVGFQLAPRLN 292

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  +  G+ LL+++D+     +A +L+ LN  RR +E  +L +AE ++     D+ 
Sbjct: 293 AAGRLETARHGAELLLTEDTACASRMAGELNALNTERRDLEQDILAEAERQLADFTPDV- 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
               IVV G+ W+ G++G++A+RL EK+ RPS  ++  +D    GS RSI G  + + +S
Sbjct: 352 --PAIVVAGEEWNAGVIGIVASRLVEKYYRPSIVLTRLDD-VYKGSCRSIAGLHLYESLS 408

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                  L++ GGHAMAAGLT+           F +     + A    P   +  +   +
Sbjct: 409 AC--RDTLIQFGGHAMAAGLTLSCERLSDFRRAFSEVVRTRLTAQDFIPKVAVSALAAPA 466

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI 544
              +  ++ L    PYG GNP P+F   N + Q    +     HL+M   +++   + A+
Sbjct: 467 DWTVETVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDIGTREHH-ITAL 525

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH-HFAKK 600
            +      L   L +       +     +N W+G +  Q  V   +P      F ++
Sbjct: 526 YWNAGD--LATVLTEEDS---DLAYTPGINEWQGERSVQCMVDTVTPAAHERIFPER 577


>gi|315612726|ref|ZP_07887637.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis ATCC 49296]
 gi|315314836|gb|EFU62877.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis ATCC 49296]
          Length = 757

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 282/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 25  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 82

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 83  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 142

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 143 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 202

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 203 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 252 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 311

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V  +        V V
Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKM------VQV 365

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 366 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADASGKNKLNLDEELDLETLSLET 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   +  ++S R +    AHL++   S+   + + +AF    
Sbjct: 483 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 541

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 542 W----ATEFSQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 587


>gi|253574928|ref|ZP_04852268.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251845974|gb|EES73982.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 801

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 179/590 (30%), Positives = 294/590 (49%), Gaps = 25/590 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +RW  L   E    A  +  +  I  ++A +LV R + S + A+ FL  S+     DP++
Sbjct: 6   YRWTQLPYDE--EAARRLAGQLNISPLLASLLVTREMESPEKAELFLRGSLAD-QHDPML 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L+   +A  RI +A+ N E+I+I+GDYD DG +S  LM+  + H     + YIP R  +G
Sbjct: 63  LSGMKEAVPRIRRAVENGERILIYGDYDADGVSSTTLMIYLMRHLGATYDYYIPHRTKEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +  ++E +  +G  LI+TVD G ++ + + YA   G+DVIV DHH+  +    AYAL
Sbjct: 123 YGLHIPVLEHYHKKGFTLIVTVDTGISAVEQVAYANAVGMDVIVTDHHEPPAVLPEAYAL 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           L   GV + +   +   L +D  +          +L AL T+ D++
Sbjct: 183 INPKLPYCTYPFKGLAGVGVAYKLAQAL---LGEDTPIAWT-------ELAALGTIADLM 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V  GL    R   PG+ AL+     SS  +T+  + + + P INA GR+  
Sbjct: 233 PLTGENRMIVKSGLASMERSAFPGMTALLGTSGWSSGEVTSTAVAFGLAPRINASGRMSH 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N    LL +++ +E E +A +LDVLN+ R+++   M+++A  ++ +Q        VIVV
Sbjct: 293 ANRAVALLTAENMEEAEAIAEELDVLNKERQIIVEDMVQEALQQLESQEQSEGLPDVIVV 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
            G+ W+ G+VG++A++L E++ RP+  +    E G+  GS RSI GFDI + ++      
Sbjct: 353 AGEGWNAGVVGIVASKLLERYYRPTIVLGIHPETGECKGSARSIPGFDIYEALTDC--AD 410

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGH  AAG+++ R            FA   +      PV + D   +   + +  
Sbjct: 411 LLDHFGGHPSAAGMSLSRERLEEFGRRLNAFAAGRLTPEHFVPVLETDLTCSLKDITLQA 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           I+ L+   P+G  N  P       KL   R +     HL++    Q+ +T++A+AF    
Sbjct: 471 IEQLQQLAPFGMANTCPRLLLRGLKLLECRQMGKDGKHLKLIL-GQNGKTVEAVAFGKGE 529

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                  + S   R+ +     VN W GS++ QL + D +      F  +
Sbjct: 530 L----APLLSEEARIDIVAEASVNEWNGSRKPQLMIQDLAVSHLQVFDYR 575


>gi|320546499|ref|ZP_08040814.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           equinus ATCC 9812]
 gi|320448884|gb|EFW89612.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           equinus ATCC 9812]
          Length = 732

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 285/592 (48%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72
           S + W ++           +T+K  I  + ++++ +R +  +     FL+  +  L  DP
Sbjct: 4   SKYHWKNIEKAPDDG-FFDLTKKEKITALASKIIYSRGIDTEEKITQFLSNDLSKLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S ++M   L      A +Y+P+R V
Sbjct: 62  YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFV 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A+ YA +QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQSQGVDVIVTDHHGLPAELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P   +      +L   GV F V   +   +              +LDLVA+ T+ 
Sbjct: 182 FAIVHPEHPEGNYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL  L++  +I    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEMLKQTERIGLMELMKVSDIDMLDVNEETVGFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A  ++  N+ R+ +   + ++A   V           V
Sbjct: 291 LDDPNPAVELLTGFDDEEALSIAQMINAKNEERKEIVQKIYDEAMNMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E   +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEHIAQPVIVLN-IEDGMAKGSARSIEAINI--FQALDDH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N  +L      +  +    L       ID VL  + +++
Sbjct: 402 RDLFEAFGGHAGAAGMTLPVENLEQLSQVLCDYIADNGIDLSQKKTLTIDEVLPLAEIDL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE   P+G  NP PVF   + +++  R +     HL++   +Q S  +  +AF  
Sbjct: 462 DTVKSLEKIAPFGMDNPKPVFEIKDFEVKQARTMGQNGAHLKLKI-TQGSTAVDLVAFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            G  + EF    + + + +   L +N W G    QL + DA          +
Sbjct: 521 -GHLVQEF---QQAQNLCLAVTLSINKWNGQTTVQLMLEDARVDGVQLIDIR 568


>gi|307610164|emb|CBW99712.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           pneumophila 130b]
          Length = 579

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 179/570 (31%), Positives = 278/570 (48%), Gaps = 23/570 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ + R +S +     L+  ++ L+P    L   ++A  R+  A+ + ++I+I
Sbjct: 17  NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R   GYG  P+++E        LIITV
Sbjct: 73  IGDFDADGATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S++ +  A   GIDV++ DHH        A A+VNPN+   L     +   GV+F
Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ + R L   N          ++ S LDLVAL TV DVV L   NR  V +G+M  R
Sbjct: 193 YVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           + Q   G+KALIE        +   +LG+ I P +NA GR+ + +LG   LI+ D +   
Sbjct: 253 QGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386
               +LD LN  RR +ES M EQA   +     + ++       + +    WH G++G+L
Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGIL 372

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A R+KEK+ RP  A +   D +  GS RS+   +I  +++       G+++K GGHAMAA
Sbjct: 373 AGRMKEKYHRPVIAFASVSDHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GL++           F       +           DG L +  +++    +++ AGP+G 
Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
               PVF     ++   R+V   HL+MT   SQ  E L AIAF V            R K
Sbjct: 493 AFAEPVFD-NIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWP----NHRIK 547

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            +H    L +N+++G  R QL +   +PV+
Sbjct: 548 YIHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577


>gi|54294498|ref|YP_126913.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           pneumophila str. Lens]
 gi|53754330|emb|CAH15807.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella
           pneumophila str. Lens]
          Length = 579

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/570 (31%), Positives = 277/570 (48%), Gaps = 23/570 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ + R +S +     L+  ++ L+P    L   ++A  R+  A+ + ++I+I
Sbjct: 17  NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R   GYG  P+++E        LIITV
Sbjct: 73  IGDFDADGATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S++ +  A   GIDV++ DHH        A A+VNPN+   L     +   GV+F
Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ + R L   N          ++ S LDLVAL TV DVV L   NR  V +G+M  R
Sbjct: 193 YVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           + Q   G+ ALIE        +   +LG+ I P +NA GR+ + +LG   LI+ D +   
Sbjct: 253 QGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS----VIVVEGDRWHPGIVGLL 386
               +LD LN  RR +ES M EQA   +     + ++       + +    WH G++G+L
Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLHDKTWHQGVIGIL 372

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A R+KEK+ RP  A +   D +  GS RS+   +I  +++       G+++K GGHAMAA
Sbjct: 373 AGRMKEKYHRPVIAFASVSDHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GL++           F       +           DG L +  +++    +++ AGP+G 
Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
               PVF     ++   R+V   HL+MT   SQ  E L AIAF V            R K
Sbjct: 493 AFAEPVFD-NIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWP----NHRIK 547

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            +H    L +N+++G  R QL +   +PV+
Sbjct: 548 YIHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577


>gi|52841691|ref|YP_095490.1| single stranded DNA specific exonuclease RecJ [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628802|gb|AAU27543.1| single stranded DNA specific exonuclease RecJ [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 579

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/570 (31%), Positives = 278/570 (48%), Gaps = 23/570 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +PD++ R+ + R +S +     L+  ++ L+P    L   ++A  R+  A+ + ++I+I
Sbjct: 17  NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L           +P+R   GYG  P+++E        LIITV
Sbjct: 73  IGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPDLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S++ +  A   GIDV++ DHH        A A+VNPN+   L     +   GV+F
Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ + R L   N          ++ S LDLVAL TV DVV L   NR  V +G+M  R
Sbjct: 193 YVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           + Q   G+KALIE        +   +LG+ I P +NA GR+ + +LG   LI+ D +   
Sbjct: 253 QGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386
               +LD LN  RR +ES M EQA   +     + ++       + +    WH G++G+L
Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGIL 372

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A R+KEK+ RP  A +   + +  GS RS+   +I  +++       G+++K GGHAMAA
Sbjct: 373 AGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GL++           F       +           DG L +  +++    +++ AGP+G 
Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
               PVF     ++   R+V   HL+MT   SQ  E L AIAF V            R K
Sbjct: 493 AFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKSWP----NHRIK 547

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            +H    L +N+++G  R QL +   +PV+
Sbjct: 548 YIHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577


>gi|152979176|ref|YP_001344805.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           succinogenes 130Z]
 gi|150840899|gb|ABR74870.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           succinogenes 130Z]
          Length = 558

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/561 (29%), Positives = 278/561 (49%), Gaps = 20/561 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ ++  ++ +P +L+  + A   + +  +   KI+I G
Sbjct: 6   DPLLDRLYRARHIQNAQE---LDRTLASML-NPNLLSGMESAVNLLTE--FQHRKIVIVG 59

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + N  IP+R   GYG + ++ E  + +G +L+ITVD 
Sbjct: 60  DFDADGATSTALTVLALRRLGFTDVNFLIPNRFEQGYGLSVAVAEMALQQGVELLITVDN 119

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + Y    G+ V++ DHH        A A+VNPN          L   GV F V
Sbjct: 120 GVSSHEGVAYLKRHGVKVLITDHHLPPETLPVADAIVNPNLDGCTFPSKSLAGVGVAFYV 179

Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275
           ++ +   LR+  +       +   LLD+VAL T+ DVVPL   NR    +GL  +  ++ 
Sbjct: 180 MLALRSKLREMGRFDNKTQPNFTELLDIVALGTIADVVPLDQNNRILAYQGLARIRAKRC 239

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
           + G++AL E  N   + +TA +LGY I P +NA GR+   ++G  LL++D  +    LA+
Sbjct: 240 HYGIRALAEVANKDITQLTAGDLGYSIAPRLNAAGRLDNMSVGVELLLADSMERARALAL 299

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +LD LNQ R+ +E  M ++A            +    +V+    WH G++G+LA+R+K++
Sbjct: 300 ELDDLNQTRKEIEQGMKQEALDICRNLTALRRELPLGMVLYQADWHQGVLGILASRIKDQ 359

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           F RP  A + + +G   GS RS+EG  +  ++         +++K GGHAMAAGL++   
Sbjct: 360 FHRPVVAFAQDGNGVLKGSARSVEGVHMRDLLERVHSRYPDMILKFGGHAMAAGLSIHEA 419

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
            F R    F +     +           DG L    +NI   + L + GP+G   P PVF
Sbjct: 420 LFERFRQVFDEVVTEWIGKDELKGTLWTDGELTPPQLNIQTAETLRAGGPWGQSFPEPVF 479

Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                K+   R+V   HL+M  E  Q  + L AIAF +      +  +++      +   
Sbjct: 480 DGE-FKILQQRLVGERHLKMLVEPKQGGQLLDAIAFNIDTRYYPDLSVRAA----KLVYK 534

Query: 571 LCVNYWRGSKRCQLRVLDASP 591
           L +N +RG++  QL V    P
Sbjct: 535 LDINEFRGNRDVQLLVDYIEP 555


>gi|307706138|ref|ZP_07642957.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           SK321]
 gi|307618538|gb|EFN97686.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           SK321]
          Length = 740

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +   +  K FL PS+  L  DP +
Sbjct: 6   YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVGRIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       G++ +++   I ++ +T E +G+ + P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGIQEMLDMAGIAANEVTEETVGFQLAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------APEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+     +  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVFN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPVFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|304385115|ref|ZP_07367461.1| single-stranded-DNA-specific exonuclease RecJ [Pediococcus
           acidilactici DSM 20284]
 gi|304329309|gb|EFL96529.1| single-stranded-DNA-specific exonuclease RecJ [Pediococcus
           acidilactici DSM 20284]
          Length = 773

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 278/583 (47%), Gaps = 28/583 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S F W      +       + +   +  I+ R+LV R   + D   +FL    + ++ DP
Sbjct: 4   SRFNWQVPSLPD--VDIAELAKATQLDPIIVRILVARGFRTADEMTNFLAMD-QSVVHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI+ AI  +EKI+++GDYD DG  S  +M   L+    + N ++P+R  
Sbjct: 61  FLLHDMQKAVERIMSAIEANEKILVYGDYDADGVTSTTIMYETLAQLGADVNYFVPNRFK 120

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN +  + FIN    QLI+TVD G    +A+ YA   G+DV+V DHH++  +   A
Sbjct: 121 DGYGPNLAEYQHFINNEQVQLIVTVDNGVAGNEAINYAQEHGVDVVVTDHHEMPDQLPNA 180

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P   +     G L   GV F V   +   + +             LDL A+ T+ 
Sbjct: 181 YAIVHPRHPEGEYPFGDLSGVGVAFKVACALLEEVPE-----------EFLDLYAIGTIA 229

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V +   NR  V  GL +       GL+ LI    + +  I  E +G+ + P INA GR
Sbjct: 230 DLVSMTDENRLLVKLGLQLIPETSRIGLQKLIAVAGVETSQIDEETIGFTVAPRINAVGR 289

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G+++   +LL + D ++   +A  ++  N  R+ + + + E A      +     Q  V
Sbjct: 290 LGDASQAVKLLTTFDEEQATAIAKDINATNTKRQGLVNEIYEMAAEIAKDEGHRDLQTLV 349

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
             + G  WH G++G++A+RL E   +P+  +S +   G   GSGRS+   ++ + ++ A 
Sbjct: 350 --ISGHDWHQGVLGIVASRLVELTNKPTIVLSDQNQDGVYKGSGRSVANLNLFEALNPAR 407

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E       GGH MA G+TV+  N   L D  +K A          P   +D  +  S ++
Sbjct: 408 EH--FEGFGGHHMAIGITVKEANLPVLADQLEKAAEQAQLDFRQRPQLNLDATVAISELS 465

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547
             L+  ++  GP+G  NP P  A  N ++  ++ +     HL+ T  +Q  + L AIAF+
Sbjct: 466 TDLVTKIKQLGPFGMDNPVPKLAITNVRVTDVKAIGQNQAHLKFT-ANQAGQQLAAIAFQ 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     +      + + G L +N WRG+   QL   D  
Sbjct: 525 RGEIA---DKLSHLSNTIDLAGTLGINEWRGNVTLQLMTEDLK 564


>gi|317049378|ref|YP_004117026.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. At-9b]
 gi|316950995|gb|ADU70470.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. At-9b]
          Length = 576

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 183/553 (33%), Positives = 268/553 (48%), Gaps = 18/553 (3%)

Query: 49  NRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108
            R V        L    + L+P    L   D A   + Q + +  +I++ GD+D DGA S
Sbjct: 32  QRGVRDA---AELERGAKHLLP-WQTLGGIDAAVTLLHQMLRDGRRIVVVGDFDADGATS 87

Query: 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168
            AL +  L     N +  +P+R  DGYG +P ++E+    GA++I+TVD G +S+  +  
Sbjct: 88  TALTVLALRSLGGNIDYLVPNRFEDGYGLSPEVVEQARARGAEMILTVDNGISSHAGVDT 147

Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228
           A   GI V+V DHH        A A+VNPN  D       L   GV F +++ +   LR 
Sbjct: 148 AHQYGIPVLVTDHHLPGDTLPAAEAIVNPNLNDSDFPSRALAGVGVAFYLMLALRAYLRS 207

Query: 229 DNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIE 284
            N         +L   LDLVAL TV DVVPL   NR  V +GL   R  +   G++AL+E
Sbjct: 208 QNWFSDGRTEPNLAEWLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRAGIRALLE 267

Query: 285 RVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
             N     + A +LG+ IGP +NA GR+ + ++G  LL+++D  E  MLA +LD LNQ R
Sbjct: 268 IANRDARQLVASDLGFAIGPRLNAAGRLDDMSVGVALLLTEDITEARMLANELDALNQTR 327

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           + +E  M  +A A             +        WH G+VG+LA+RLKE+F RP  A +
Sbjct: 328 KEIEQGMKSEALALCDALERQHTDLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAFA 387

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460
              DG   GSGRSI G  +   +        G+++K GGHAMAAGL+++   +      F
Sbjct: 388 PAGDGTLKGSGRSIAGLHLRDALERLDTLFPGLMIKFGGHAMAAGLSLQEARYEEFRQRF 447

Query: 461 QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS 520
                  +       V   DG L A   ++   ++L  AGP+G   P PVF     KL  
Sbjct: 448 AALIDEWLDGEALQGVIWSDGELRAQEFSLQTAELLREAGPWGQAFPEPVFDGR-FKLLQ 506

Query: 521 IRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
            R+V   HL++  E       L  IAF V  T   +    S  +++ +   L +N +RG+
Sbjct: 507 QRLVGERHLKVMVEPIGGGPLLDGIAFNVDTTLWPD----SSVRQVELAYKLDINEYRGN 562

Query: 580 KRCQLRVLDASPV 592
           +  QL +    P+
Sbjct: 563 RSVQLIIDHLWPL 575


>gi|182624017|ref|ZP_02951805.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens D str. JGS1721]
 gi|177910910|gb|EDT73264.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens D str. JGS1721]
          Length = 592

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/603 (28%), Positives = 300/603 (49%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  +P ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGRIENL-NNPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI N  KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIENGNKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N + ++    EG ++I+T D G  +++ +  A   G+DVI+ DHH +           
Sbjct: 121 GMNSNRVKILKEEGTEIILTCDNGIAAFEEIDLAQKLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEVPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADTLAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I   
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNI--F 410

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              +  + ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 411 EELSKCKELISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|209526934|ref|ZP_03275452.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima
           CS-328]
 gi|209492629|gb|EDZ92966.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima
           CS-328]
          Length = 686

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/612 (26%), Positives = 286/612 (46%), Gaps = 35/612 (5%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKD 59
           M D+  +  E  +   RW      E    A ++++   +  I+A++L+NR + + + A+ 
Sbjct: 1   MEDKPPITTEPLLPKQRWYIFP--ERPEIAQSLSETTGVHPIIAQILINRGIETKEQAEA 58

Query: 60  FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119
           FLNP  + L        D  K  + +  AI N +KI I GDYD DG  S AL++R +S  
Sbjct: 59  FLNPQSQTLPEPMEEFPDLPKTVQLLQNAIDNQQKIAICGDYDADGMTSTALLIRAISQL 118

Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
             +    IP R+ +GYG N  ++E+F ++G  +IITVD G ++   +  A   G+ VI+ 
Sbjct: 119 GADITSAIPSRMQEGYGINNRIVEEFHDQGISIIITVDNGISAIAPVARAKELGLTVIIT 178

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
           DHH +  +   A A++NP  L   S    L   GV +++ + + ++  +   +       
Sbjct: 179 DHHDLPPQLPNADAILNPKLLPKTSPYYGLAGVGVAYILALSLAKLRGEWESLRW----- 233

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL----------IERVNIS 289
            LL+L  L T+ D+ PL G+NR +V +GL +       G++AL              N +
Sbjct: 234 QLLELFTLGTIADMAPLNGVNRRWVKRGLKILPESKIAGVQALIQIAGLANQQPNLTNST 293

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
           + +  E++G+ +GP INA GRIG   +   LL +D        A + +  N  R+ + + 
Sbjct: 294 TSMKPEDIGFRLGPRINAIGRIGHPQVVIELLTTDHMGTALEQAKECEETNLLRKQLCAD 353

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           + ++A A       +++Q  V+V    +WH G++G++A+RL E++G P F  ++E++   
Sbjct: 354 IEQEAIAWYENSNINLEQERVLVPCQKKWHHGVIGIVASRLVERYGVPVFICTYEDEENL 413

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GS R I  F + + + F   + +L K GGH  A G ++   N  +      +FAH  + 
Sbjct: 414 RGSARGIPEFHVFEALQFC--QDLLGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQ 471

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529
                P+  +D  +N   +N  L D ++   P G  N  PVF  P  ++   ++V  +H+
Sbjct: 472 VEHLRPLINVDVSINLRDINYKLYDQIDKIQPCGIANSEPVFWTPKLRIVHQKIVGKSHI 531

Query: 530 QMTFESQD--------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           ++T               T+ AIA+R                 +     L  N W     
Sbjct: 532 KLTLSQDLPPEITMAVLPTISAIAWRWADYF-------PLPSPLDFAYKLRKNTWNNQTA 584

Query: 582 CQLRVLDASPVE 593
            +L ++     E
Sbjct: 585 IELEIVGVRLPE 596


>gi|322387143|ref|ZP_08060753.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           infantis ATCC 700779]
 gi|321141672|gb|EFX37167.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           infantis ATCC 700779]
          Length = 739

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/590 (29%), Positives = 287/590 (48%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +    AR+L +R +  +     FL PS+  L  DP +
Sbjct: 6   YNWQFAPQVED-ADFTKIAKKAGLGPEAARLLFSRGIKDEDSLSRFLAPSLDDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVNRIRRAIEQGEFILVYGDYDADGMTSASIIKETLEQLGAECLVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      A+A
Sbjct: 124 YGPNASVYKYFIEQQGISLIVTVDNGVAGHEAIDLAQSMGVDVIVTDHHSLPEVLPDAHA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +      HL   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPESDYPFKHLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V R     GL+ L E   I SS +T E +G+ + P +NA GR+ 
Sbjct: 233 VSLTDENRIMVQYGLEVLRNTQRLGLQELFEIAGISSSDLTEETVGFQLAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E+  +A+ +   N+ R+ +  A+ E+A++ V          SV V
Sbjct: 293 DPNPAIELLTGFDDEEVREIALMIQDKNEERKEIVQAIYEEAKSLV------DPNKSVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RSIE  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSIEAVDI--FEALNPHRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L +  + +  +            +D  L+  ++++  
Sbjct: 404 LFIAFGGHAGAAGMTLEAEQLDALSEILETYVKDKGIDAKGKNTLYLDEELDLESLSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   + ++++ R +    +HL++   S+ + + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIRDFQVENARSMGAGDSHLKLKI-SKGTASFEVVAFGQG- 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               +    S+ K++ +   L VN W G    QL ++DA       F  +
Sbjct: 522 ---SKATEFSQVKQLELAVTLSVNQWNGQTTLQLMMVDARVDSVQLFNIR 568


>gi|146312950|ref|YP_001178024.1| ssDNA exonuclease RecJ [Enterobacter sp. 638]
 gi|145319826|gb|ABP61973.1| exonuclease RecJ [Enterobacter sp. 638]
          Length = 577

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/565 (30%), Positives = 274/565 (48%), Gaps = 20/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+   R V      + L  S++ ++P    L+  + A   +  A+    +I++
Sbjct: 21  DLSPLLRRLYAGRGVRNA---NELERSVKGMLP-WQQLSGVETATELLYNALREGTRIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L     +     +P+R  DGYG +P ++++    GAQ+I+TV
Sbjct: 77  VGDFDADGATSTALTVLSLRALGCDNVTYLVPNRFEDGYGLSPEVVDQAKARGAQMILTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   GI VIV DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVDRAHQLGIPVIVTDHHLPGDTLPAADAIINPNLRDCDFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +  +LR             +L   LDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRALLRDKGWFEARGIAVPNLAEYLDLVALGTVADVVPLDTNNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
           +LA +LD LN+ R+ +E  M  +A           +       +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNETRKEIEQGMQAEALTLCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHPGLMIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F      F     + +   +       DG L  + + + +  +L  +GP+G   P
Sbjct: 437 LEEKKFDEFQRLFSALVTDWLDPALLQGEVVSDGALTPAEMTMEIAQLLRESGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     +L   R+V   HL++  E       L  IAF V  +   +    +  + + 
Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPIGGGPLLDGIAFNVDTSVWPD----NGVREVE 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           +   L +N +RG++  Q+ +    P
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDHIWP 576


>gi|295697199|ref|YP_003590437.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus tusciae DSM
           2912]
 gi|295412801|gb|ADG07293.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus tusciae DSM
           2912]
          Length = 575

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/581 (29%), Positives = 289/581 (49%), Gaps = 27/581 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW++     G   A+A  Q+      +AR+L  RN+ + + A  FLNP +  L  DP  
Sbjct: 2   KRWIAAPADPG---AVATLQREGFSSFMARILAARNIRTGEEAGRFLNPRLEDL-EDPAK 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +     A  RI +A+ N E I ++GDYD DG  + +++   L         YIPDR  +G
Sbjct: 58  MKGMLPALARIREALANRESIAVYGDYDCDGVCATSILYLALRELGARVQAYIPDRFQEG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   + +    G +LIITVD G T+    + A + G+D+I+ DHHQ  +E   A A+
Sbjct: 118 YGLHEEAIRELYARGVRLIITVDTGITALRQAETARSLGVDLIITDHHQPPAELPRALAV 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP +        +LC AG+ F ++  +   + +             LDLVA+ATV D+V
Sbjct: 178 VNPKQPGCPYSDTNLCGAGIAFKMVQGLLGRVPE-----------EFLDLVAIATVADLV 226

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL+G NR  V  GL   +    PGL ALI+   +   P+T+ +LG+ +GP +NA GR+  
Sbjct: 227 PLLGENRILVHFGLKQLQNPQRPGLAALIKSAGLDGRPLTSGHLGFQLGPRLNAAGRMET 286

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N   RLL + D +E +    +L+ LN+ R+ +   +   A  ++     + +    +V+
Sbjct: 287 ANAAFRLLTTADPEEAQKWTEQLETLNRERQRLCDEIAAVASEEIDRH-PEWRAQPSLVL 345

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ W+PG++G++A+R+ E++ RP+  I+  +     GS RSI GFD+           +
Sbjct: 346 AGEGWNPGVIGIVASRMVEQYYRPTLVIA-LDGDTAKGSARSIPGFDLY--SGLKEIADL 402

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             + GGH MAAG ++       L   F + A + + A    P    D  +N   +++ L 
Sbjct: 403 FDRFGGHTMAAGFSLPAKRVEDLRRRFAEVAASRLTAEDLRPRILCDAEINLEKIDLPLA 462

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
           + L +  P+G GNP P     +  L   R V  +  HL++   + +   + A+A+R    
Sbjct: 463 ESLATLEPHGLGNPAPKLFVRSAPLLESRTVGASAAHLRLRIGNPEH-PVTALAWRRGDD 521

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 +    + +H+ G + +N W G+K+ QL + D  P 
Sbjct: 522 I---RFLAQGVRAVHLVGRVQINEWNGTKKVQLELDDWRPA 559


>gi|291613972|ref|YP_003524129.1| single-stranded-DNA-specific exonuclease RecJ [Sideroxydans
           lithotrophicus ES-1]
 gi|291584084|gb|ADE11742.1| single-stranded-DNA-specific exonuclease RecJ [Sideroxydans
           lithotrophicus ES-1]
          Length = 563

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/561 (29%), Positives = 273/561 (48%), Gaps = 24/561 (4%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +  I  ++AR+   R + +D A+  L+  ++ L+P   +L + ++ A  +  AI + ++I
Sbjct: 19  ESGIAPLLARIYAARGI-VDTAQ--LDTDLKQLLP-FSLLKNAERMASILADAIADHKRI 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
           +I  DYD DGA +  + MR L+         +P+R   GYG  P ++         +++T
Sbjct: 75  LIVADYDADGATACTVAMRGLAALGAKVEFIVPNRFEYGYGLTPEIVRLAAESKPDILLT 134

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G  S + +  A   GI V+V DHH        A  +VNPN+        HL   GV+
Sbjct: 135 VDNGIASVEGVAEANRLGIQVLVTDHHLPGDTLPDALCIVNPNQPGCTFPSKHLAGVGVM 194

Query: 216 FLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           F VL+ +   +R+          +L +LLDLVAL TV DVV L   NR  V +GL   R 
Sbjct: 195 FYVLMALRAEMRERGVFAGKTEPNLGNLLDLVALGTVADVVKLDDNNRILVQQGLQRIRA 254

Query: 274 QGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
             +       L      +   ++  LG+++GP +NA GR+ + +LG R L++DD+ E   
Sbjct: 255 GRSCAGIQALLRIARRPAIQSSSYELGFIVGPRLNAAGRLDDMSLGIRCLLTDDTAEAGE 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LN  RR +E+ M + A    +    D      + +  + WH G++G+LA+RLK
Sbjct: 315 IATRLDALNHERRSIEADMQDSAL--AVLDNFDPADGYSLTLFNEDWHQGVIGILASRLK 372

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           +KF RP  A +  + G+  GSGRSI G  +   +      +  ++ K GGHAMAAGL++ 
Sbjct: 373 DKFHRPVIAFARAQTGELKGSGRSIAGLHLRDALDLISKRQPHLIQKFGGHAMAAGLSIH 432

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             +       F+  A  ++ A     V   DG L+    ++ +   L+    +G G P P
Sbjct: 433 EEHLNDFRQAFETVAQELLDADALVKVISTDGSLDTHEFSMDIARDLQR-QVWGQGFPEP 491

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           +F   + ++Q+ RVV   HL++   S    +  AI F         F  +   + +H   
Sbjct: 492 LFEG-DFRVQTQRVVGEKHLKLKLSSPAG-SFDAIRF---------FSAEPAPEHIHAVY 540

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L VN + GS+  QL V   +
Sbjct: 541 SLSVNEYNGSESLQLIVRHWA 561


>gi|191638544|ref|YP_001987710.1| Single-strand DNA-specific exonuclease RecJ [Lactobacillus casei
           BL23]
 gi|190712846|emb|CAQ66852.1| Single-strand DNA-specific exonuclease RecJ [Lactobacillus casei
           BL23]
 gi|327382581|gb|AEA54057.1| Single-stranded DNA-specific exonuclease [Lactobacillus casei LC2W]
 gi|327385779|gb|AEA57253.1| Single-stranded DNA-specific exonuclease [Lactobacillus casei
           BD-II]
          Length = 764

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 282/592 (47%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           + ++W     Q     A A+++   +P  +A +L+ R ++       F++P    L  DP
Sbjct: 2   TQYQWQLAP-QPAAADAHALSETLGVPPFLATLLLQRGINDQADYDAFVHPDTSRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI  +EKI I+GDYDVDG  S A+M+  L     + +++IPDR  
Sbjct: 60  FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G      +  A   G+DV+V DHH++ ++   A 
Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + + + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E  G+P+  ++  +DG+   GSGRSIE + + K +  A E
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              +V  GGH MA GLT +  +   +    +  A  ++   +  P   I   L  + + +
Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPISTRLEDADLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
               ++    P+G GNP PVF+     +Q+++ +     HL+   +      +  I F  
Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQAIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      +  +   +   L  N W+G    QL + D    +      +
Sbjct: 520 GDA----AETLATAQAAKLAVQLDQNTWQGHTSLQLMLKDYEVKQPQVIDWR 567


>gi|303250251|ref|ZP_07336451.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252016|ref|ZP_07533916.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650867|gb|EFL81023.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860485|gb|EFM92498.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 571

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/559 (31%), Positives = 276/559 (49%), Gaps = 19/559 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 20  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN +D       L   GV F V+
Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLVDCSFPSKSLAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R++   HL++  E        AI F        +  +    K   +   
Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L +N ++G+K  QLR+ + 
Sbjct: 551 LDINEFKGNKNLQLRIENI 569


>gi|126207943|ref|YP_001053168.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae L20]
 gi|126096735|gb|ABN73563.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 585

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 34  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 89

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 90  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 149

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 150 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 209

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 210 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 269

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 270 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 329

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 330 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 389

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 390 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 449

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 450 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 509

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R++   HL++  E        AI F        +  +    K   +   
Sbjct: 510 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 564

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L +N ++G+K  QLR+ + 
Sbjct: 565 LDINEFKGNKNLQLRIENI 583


>gi|53728846|ref|ZP_00134889.2| COG0608: Single-stranded DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|303252129|ref|ZP_07338297.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245298|ref|ZP_07527386.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247465|ref|ZP_07529510.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249691|ref|ZP_07531672.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307258709|ref|ZP_07540441.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302648912|gb|EFL79100.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853639|gb|EFM85856.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855968|gb|EFM88126.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858280|gb|EFM90355.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306867060|gb|EFM98916.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 571

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 20  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R++   HL++  E        AI F        +  +    K   +   
Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L +N ++G+K  QLR+ + 
Sbjct: 551 LDINEFKGNKNLQLRIENI 569


>gi|322377822|ref|ZP_08052311.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           M334]
 gi|321281245|gb|EFX58256.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           M334]
          Length = 744

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +   +  K FL PS+  L  DP +
Sbjct: 10  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVARIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGTDAAGKNKLNLDEELDLETLSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMNNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 L----ATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|307256514|ref|ZP_07538295.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864924|gb|EFM96826.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 571

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 20  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R++   HL++  E        AI F        +  +    K   +   
Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L +N ++G+K  QLR+ + 
Sbjct: 551 LDINEFKGNKNLQLRIENI 569


>gi|190149805|ref|YP_001968330.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914936|gb|ACE61188.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 585

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 34  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 89

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 90  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 149

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 150 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 209

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 210 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 269

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      + + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 270 GIRALAEVSKRELASLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 329

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 330 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 389

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 390 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 449

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 450 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 509

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R++   HL++  E        AI F        +  +    K   +   
Sbjct: 510 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 564

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L +N ++G+K  QLR+ + 
Sbjct: 565 LDINEFKGNKNLQLRIENI 583


>gi|307263125|ref|ZP_07544746.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871487|gb|EFN03210.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 571

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 20  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      + + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 256 GIRALAEVSKRELASLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R++   HL++  E        AI F        +  +    K   +   
Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L +N ++G+K  QLR+ + 
Sbjct: 551 LDINEFKGNKNLQLRIENI 569


>gi|24379867|ref|NP_721822.1| putative single-strand DNA-specific exonuclease RecJ [Streptococcus
           mutans UA159]
 gi|24377841|gb|AAN59128.1|AE014979_4 putative single-strand DNA-specific exonuclease RecJ [Streptococcus
           mutans UA159]
          Length = 734

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/583 (29%), Positives = 275/583 (47%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     +        + +K  +    A++L  R   +    + FL P +  L  DP
Sbjct: 4   SKYAWKINEKKPDDG-FFELAKKENLNPTAAQILYERGFKTSKDIEAFLRPDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI +AI  +E+I+I+GDYD DG  S ++    L         Y+P+R  
Sbjct: 62  FLLNDMDKAVTRIRRAIETNERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G   +DA+ YA  QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQGQGVDVIVTDHHSMPAELPSA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P   D       L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 YAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL+ LI    +    I  E +G+ + P +NA GR
Sbjct: 231 DMVSLTDENRVMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E + +A  ++  N+ R+ +  A+ E+A   V       +  SV
Sbjct: 291 LDDPNPAVELLTGFDDEEAKTIAAMINEKNEERKTIVQAIFEEAMTLV------DENKSV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WH G++G++A R+ E+  +P   ++  E+G   GS RS+E  +I    +    
Sbjct: 345 QVLAKEGWHAGVLGIVAGRIMEQINQPVIVLN-IENGLAKGSARSLESVNI--FNALDAH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + +  GGHA AAG+T+E      L      +       L       ID  L    +++
Sbjct: 402 RDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE+  P+G  N  P+F   +  ++ +R +     HL++    +       +AF  
Sbjct: 462 DTLKGLETLAPFGMNNKKPIFLLRDFTVKQVRTMGQNGAHLKLKVAQEQ-AVFDLLAFN- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           YG+ + EF    + + + +   L VN W G+   QL ++DA  
Sbjct: 520 YGSLVTEF---QQAQHLELAVTLSVNRWNGNTSLQLMLVDARV 559


>gi|331266844|ref|YP_004326474.1| single-stranded DNA-specific exonuclease [Streptococcus oralis Uo5]
 gi|326683516|emb|CBZ01134.1| single-stranded DNA-specific exonuclease [Streptococcus oralis Uo5]
          Length = 757

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/591 (29%), Positives = 282/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 25  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQNEESLKKFLEPSLEDLH-DPYL 82

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 83  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 142

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    L++TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 143 YGPNASVYKYFIEQEGISLVVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 202

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 203 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ + P +NA GR+ 
Sbjct: 252 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETIGFQLAPRLNALGRLD 311

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 365

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  E+G+  GS RS+E  DI    +      
Sbjct: 366 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEEGRAKGSARSVEAVDI--FEALDPHRD 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLET 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   +  ++S R +    AHL++   S+   + + +AF    
Sbjct: 483 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 541

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 542 W----ATEFSQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 587


>gi|270291404|ref|ZP_06197626.1| single-stranded-DNA-specific exonuclease [Pediococcus acidilactici
           7_4]
 gi|270280250|gb|EFA26086.1| single-stranded-DNA-specific exonuclease [Pediococcus acidilactici
           7_4]
          Length = 773

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 278/583 (47%), Gaps = 28/583 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S F W      +       + +   +  I+ R+LV R   + D   +FL    + ++ DP
Sbjct: 4   SRFNWQVPSLPD--VDIAELAKATQLDPIIVRILVARGFRTADEMTNFLAMD-QSVVHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI+ AI  +EKI+++GDYD DG  S  +M   L+    + N ++P+R  
Sbjct: 61  FLLHDMQKAVERIMSAIEANEKILVYGDYDADGVTSTTIMYETLAQLGADVNYFVPNRFK 120

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN +  + FIN    QLI+TVD G    +A+ YA   G+DV+V DHH++  +   A
Sbjct: 121 DGYGPNLAEYQHFINNEQVQLIVTVDNGVAGNEAINYAQEHGVDVVVTDHHEMPDQLPNA 180

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P   +     G L   GV F V   +   + +             LDL A+ T+ 
Sbjct: 181 YAIVHPRHPEGEYPFGDLSGVGVAFKVACALLEEVPE-----------EFLDLYAIGTIA 229

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V +   NR  V  GL +       GL+ LI    + +  I  E +G+ + P INA GR
Sbjct: 230 DLVSMTDENRLLVKLGLQLIPETSRIGLQKLIAVAGVETSQIDEETIGFTVAPRINAVGR 289

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G+++   +LL + D ++   +A  ++  N  R+ + + + E A      +     Q  V
Sbjct: 290 LGDASQAVKLLTTFDEEQATAIAKDINATNTKRQGLVNEIYEVAAEIAKDEGHRDLQTLV 349

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
             + G  WH G++G++A+RL E   +P+  +S +   G   GSGRS+   ++ + ++ A 
Sbjct: 350 --ISGHDWHQGVLGIVASRLVELTNKPTIVLSDQNQDGVYKGSGRSVANLNLFEALNPAR 407

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E       GGH MA G+TV+  N   L D  +K A          P   +D  +  S ++
Sbjct: 408 EH--FEGFGGHHMAIGITVKEANLPVLADQLEKAAKQAQLDFRQRPQLNLDATVAISELS 465

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547
             L+  ++  GP+G  NP P  A  N ++  ++ +     HL+ T  +Q  + L AIAF+
Sbjct: 466 TDLVTKIKQLGPFGMDNPVPKLAITNVRVTDVKAIGQNQAHLKFT-ANQAGQQLAAIAFQ 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     +      + + G L +N WRG+   QL   D  
Sbjct: 525 RGEIA---DKLSHLSNTIDLAGTLGINEWRGNVTLQLMTEDLK 564


>gi|307704351|ref|ZP_07641268.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           SK597]
 gi|307622111|gb|EFO01131.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           SK597]
          Length = 740

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R + + +  K FL PS+  L  DP +
Sbjct: 6   YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKNFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|225854144|ref|YP_002735656.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae JJA]
 gi|225723682|gb|ACO19535.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae JJA]
          Length = 740

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGGASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|295108470|emb|CBL22423.1| exonuclease RecJ [Ruminococcus obeum A2-162]
          Length = 614

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/584 (29%), Positives = 282/584 (48%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLIL 75
           +W+    +        I +K  I  ++AR++ NR+V  + A + +L+ ++  L P P ++
Sbjct: 47  KWMVYAKKADFQ---EIGRKFGIDPVIARLIRNRDVDGEEAIQSYLHGTLEEL-PSPWLM 102

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   +   I  ++KI I GDYD+DG  +  ++++ L      A+  IPDRI DGY
Sbjct: 103 KDMDKAVEILRTKIAGNKKIRIIGDYDIDGVTATCILLKGLKRLGAQADTCIPDRIKDGY 162

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  L+++   +G   I+T D G  +   +  A  +G+ V++ DHH V   +       
Sbjct: 163 GLHEQLIDQASEDGIDTIVTCDNGIAAAGEIADARCRGMTVVLTDHHDVPFRDSENGREW 222

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A++NP + D      ++C A V + ++  +Y     D       ++L   +L A
Sbjct: 223 IIPCADAVINPKQQDCSYPNKNICGAVVAWKLIWALYEKAGIDKS-----EILDFTELAA 277

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ L G NR  V  GL        PGL+ALI   N+  + ITA ++G+++GP I
Sbjct: 278 IATVGDVMDLQGENRIIVKHGLRRLSETTRPGLQALICVNNLKGAEITAYHVGFVLGPCI 337

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL ++D QE   LA  L  LNQ+R+ M     EQA  ++ T+   I
Sbjct: 338 NASGRLDTATRALALLCTEDGQEAAKLAGDLYNLNQSRKAMTEQGKEQAINEIETEG--I 395

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V+VV     H  + G++A R++E + +P F ++  E+G   GSGRSIE + +    
Sbjct: 396 NKNRVLVVYLPECHESLAGIIAGRIRELYHKPVFVLTKSENGV-KGSGRSIEAYSMY--E 452

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +L++ GGH MAAGL++   N  R      +     +      P   ID  +  
Sbjct: 453 ELVKCRDLLIQFGGHPMAAGLSMAEENVERFRKKLNENC--TLSENDLMPKVMIDVPMPI 510

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQA 543
           S +   L + L+   P+G GN  P+FA  N  +  +R+        +MT    D     A
Sbjct: 511 SYLTETLTEELKVLEPFGKGNTKPLFAQRNLHVSKLRIFGKNRNVAKMTLTDSDGVWKDA 570

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F        EF+       + VT +  +N ++G +  Q+ + 
Sbjct: 571 VFFGEAD-EFAEFVSMH--DTISVTYYPEINEYQGRRTLQVVIR 611


>gi|307703204|ref|ZP_07640150.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis
           ATCC 35037]
 gi|307623279|gb|EFO02270.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis
           ATCC 35037]
          Length = 739

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/590 (29%), Positives = 279/590 (47%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 6   YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +++P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIIKESLEQLGAECRVHLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  ED +  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDDRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + +++S R +    AHL++   S+   T + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEATFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                    ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 523 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVEGIQLFNIR 568


>gi|260583943|ref|ZP_05851691.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella
           elegans ATCC 700633]
 gi|260158569|gb|EEW93637.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella
           elegans ATCC 700633]
          Length = 771

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/594 (28%), Positives = 288/594 (48%), Gaps = 29/594 (4%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S +  +W  +   E    +  I +   +  ++ ++   R   + +  ++FL+ S   L  
Sbjct: 2   SFANAKWDLI-NNEIEESSKEIAKALGLSPLLIQICRRRGYQTEEQIQEFLSSS-PTLWH 59

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP ++ D +KA +RI QAI   E I+IFGDYD DG  S A++   L         Y+P+R
Sbjct: 60  DPYLMYDMEKAIQRIQQAIETDESILIFGDYDADGITSTAVLYETLEMMGAQVEYYLPNR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
            +DGYGPN  + E+++ +G  LIITVDCG  +++++++A +Q  DVIV DHH++      
Sbjct: 120 FIDGYGPNIRVFEEYLEKGVSLIITVDCGIAAHESVEWAMSQQCDVIVTDHHEIPPVLPK 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           AYA+++P   D     G L  AGV F +   +   L            + L ++  + T+
Sbjct: 180 AYAVIHPRHPDGEYPFGDLSGAGVAFKLAHALLGELP-----------VELAEIACIGTI 228

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309
            D+V L   NR+ V  GL    +    GL  L + +  I   I  + +G+ +GP +NA G
Sbjct: 229 ADLVSLTDENRSLVKLGLQQLNQTERIGLSYLFQELQLIPGSIDEKTIGFQVGPCLNALG 288

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G++  G  L  + D +  + +   +   N  R+ +   + ++A      Q        
Sbjct: 289 RLGDATPGVALFTTFDDEVAQEVVTLMQQENAKRKQIVDDITKEALELAKAQI----DHK 344

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA 428
           V+V+    WH G++G++A+R+ E+  +P+  +  + DG    GS RS   F++   +S+ 
Sbjct: 345 VLVLAQSNWHEGVLGIVASRIVEQLQKPTIVLGIQSDGLMAKGSARSCAQFNLYDALSYC 404

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E   L K GGH MAAGL+VE V      +  + +A      L    V  I+  L+ S V
Sbjct: 405 QE--TLAKFGGHHMAAGLSVETVMLPGFMEAIETYAKQHPELLEDEKVIPIEEALSLSQV 462

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546
           N+  ID L++  PYG  N  P+F   N  +   + +     HL++T  S+ ++ LQA+ F
Sbjct: 463 NVEFIDSLQALKPYGTNNAEPIFKISNILVGQKQKIGAQQQHLKLTLNSEQNQ-LQALIF 521

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                        +    + V G L +N W+ ++  QL + D S  +   F  +
Sbjct: 522 NKGEW----ADSLNLQAEVEVIGTLEINEWQQNRLPQLMLKDISVKDALIFDWR 571


>gi|293364953|ref|ZP_06611670.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis
           ATCC 35037]
 gi|291316403|gb|EFE56839.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis
           ATCC 35037]
          Length = 758

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/590 (29%), Positives = 279/590 (47%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 25  YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 82

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +++P+R  DG
Sbjct: 83  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIIKESLEQLGAECRVHLPNRFTDG 142

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 143 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 202

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 203 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 252 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 311

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 365

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  ED +  GS RS+E  DI    +      
Sbjct: 366 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDDRAKGSARSVEAVDI--FEALDPHRD 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLET 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + +++S R +    AHL++   S+   T + +AF    
Sbjct: 483 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEATFEVVAFGQGR 541

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                    ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 542 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVEGIQLFNIR 587


>gi|289434805|ref|YP_003464677.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171049|emb|CBH27591.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 781

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W     +E   +A+ + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAEE--EKAVQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYQSY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI   ++I+++GDYD DG  S+A++M+ L H   NA+ YIP+R  
Sbjct: 61  FLFAEMDVAVARIKQAIELEQQILVYGDYDADGVTSIAVLMKTLRHLGANADFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +    +G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNVAAFDMAKKQGIDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P   +       L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPNSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLREGANIGLGVLAKKASLKLEEATEETIGFGLAPRLNAIGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +        V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DNLGKVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRSIE F + +       
Sbjct: 347 VVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDSVTGIAKGSGRSIESFHLYQA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A  ++      P  KI+  +N + V +
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLAELELKLQEEAS-LLAEEDFRPALKIEERINLADVTV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
           + I  LE   P+G  NP P+F      L+  + +     HL+   E+++S+ TL AI F 
Sbjct: 464 SFIAQLEKLAPFGMDNPKPIFLLEGMHLKGTKRIGADKTHLKTMLEAKESDATLDAIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPSADVDVVGELSINEWNNIKKPQLRMMDVRIPHWQLFDVR 572


>gi|328954455|ref|YP_004371789.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454779|gb|AEB10608.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobacca
           acetoxidans DSM 11109]
          Length = 570

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/578 (32%), Positives = 303/578 (52%), Gaps = 21/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            RW     Q        ++++H +P++VA++L+NR ++       FL+PS+  L+P P  
Sbjct: 5   QRWRPYPSQP--ELVRDVSRRHQVPELVAQILLNRGLAQAGEIDSFLDPSLNRLLP-PGG 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D   AA R+VQA+   E I I+GDYDVDG  + AL+  FL         YIP+R+  G
Sbjct: 62  LQDLPSAAARLVQALEKGETIAIYGDYDVDGLTATALLRHFLESLGAAVISYIPNRLNQG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + S + +     AQ+++TVDCG ++    + A + G+DVI+ DHH+V +   PA A+
Sbjct: 122 YGLHESALSELAR-RAQVVVTVDCGISNASEARVARDLGLDVIITDHHEVPATLPPAIAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252
           +NP R D       L   GV   + + +   LR+          +L + LDLVAL T  D
Sbjct: 181 LNPKRPDCGYAFKELAGVGVALNLALGLRAYLREMGWFARRPEPNLKAYLDLVALGTAAD 240

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL G+NR  V +GL V  +   PG++AL    +    P++   + + + P +NA GR+
Sbjct: 241 VVPLAGVNRILVSQGLKVLAKSRRPGIEALKAVTHLEDRPVSLREVVFRLAPRLNAAGRM 300

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++     LL+++D  +  +LA  LD LN+ R+ +E+ ++  AE ++L Q         +
Sbjct: 301 GQAQAALELLLTEDRDKARLLAGALDRLNRERQSLEAKIIRDAETQILQQGFG--NRPAL 358

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ G+ WHPG++G++AA+L E+F RP   ++  ++G G GS RS+E FD+ K ++   E 
Sbjct: 359 VLAGEDWHPGVIGIVAAKLAERFFRPVALLT-LKNGVGRGSARSVEAFDLYKGLTSCQEH 417

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             L++ GGHA AAG T+     G     F+      + +    P   +D V+  + ++  
Sbjct: 418 --LLQFGGHAAAAGFTLAPDRVGDFRQAFEATVLQELGSEPKRPELAVDAVVTLAELDDE 475

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
               L+   P+G GNP PV A  + +L    VV   HL++   S+    + AIAF     
Sbjct: 476 FFFHLDRLRPFGQGNPEPVLACLSAQLVDSWVVGEKHLKLKLASE-GRIMTAIAF----- 529

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              +  +        V     +N+++G  + +LRVLD 
Sbjct: 530 --DQASLHPLRGCYDVAFGTRLNFFQGRNQPELRVLDL 565


>gi|255746912|ref|ZP_05420857.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholera CIRS
           101]
 gi|262161545|ref|ZP_06030655.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           INDRE 91/1]
 gi|255735314|gb|EET90714.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholera CIRS
           101]
 gi|262028856|gb|EEY47510.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           INDRE 91/1]
          Length = 545

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/538 (31%), Positives = 266/538 (49%), Gaps = 21/538 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           +     L   D+A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +
Sbjct: 11  LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  DGYG +P ++++ I  GA++I+TVD G +S + ++YA  +G+ V+V DHH    E
Sbjct: 71  PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243
                A+VNPN          L   GV F +++ +   +RQ             L+ L+D
Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELID 190

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG++ALIE        + A + G+ +
Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359
           GP INA GR+ + + G  LL+ ++      +A +LD LNQ R+ +E  M     A  + L
Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
              DD +    +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G 
Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370

Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
            +   +        GI++K GGHAMAAGLT+E  NF R C  F +     +       + 
Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGII 430

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535
             DG L     ++   ++L + GP+G   P P+F     K+   ++V   HL++  E   
Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489

Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  +  IAF V      +    +  K + +   L +N +RG++  QL +    
Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 543


>gi|18311047|ref|NP_562981.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens str. 13]
 gi|18145729|dbj|BAB81771.1| probable single-strand DNA-specific exonuclease [Clostridium
           perfringens str. 13]
          Length = 592

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/603 (28%), Positives = 300/603 (49%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  DP ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I   
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNI--F 410

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              +  + ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 411 EELSKCKELISKFGGHPMAAGLSVEEKNIPLLRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|81428888|ref|YP_395888.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610530|emb|CAI55581.1| Single-strand DNA-specific exonuclease RecJ [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 770

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/580 (30%), Positives = 277/580 (47%), Gaps = 27/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W              IT+ + +P   A++L  R +   +   DF+NP++  L  DP  
Sbjct: 5   YEWQLKPVPTEDEL-QTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLH-DPYA 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  KA  RI +AI N EKI I+GDYD DG  S  LM   L     +  +Y+P+R  DG
Sbjct: 63  LHDMQKAIDRIQEAIVNGEKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN    ++ I  G QLI+TVD G +  + + YA   G+DV+V DHH++ SE   A A+
Sbjct: 123 YGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEHGVDVVVTDHHELPSELPNAVAI 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   +     G LC  GV F V   +   +  D            LDL A+ TVCD+V
Sbjct: 183 VHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDK-----------LDLAAIGTVCDIV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL+  NR  V  GL   +    PGL AL +   +    + A N+G+ IGP +NA GR+G+
Sbjct: 232 PLVDENRTLVSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGD 291

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + LG +LL + D +E    A  ++  N+ R+ +   +   A      +  + Q ++ +V+
Sbjct: 292 ATLGVQLLTTLDDEEAVEQAQFIEQQNKKRQGLVQEITATAMTIA--ETPENQASATLVI 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
             + WH G++G++A+ + E+ G+P+  ++   E G   GSGRS+  F +    +      
Sbjct: 350 AHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHL--FKALDAHRE 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +LV  GGH MA GLT +      +     ++A      L       +D  L  + +   L
Sbjct: 408 LLVHFGGHHMAVGLTAKVDQLALIQTAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDL 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              L+   P+G+ NP P+      +L  ++ +     HL+M    Q  + L  +AF   G
Sbjct: 468 YQALQQLAPFGSDNPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQ-QQLAVLAFN-KG 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             + +         + + G L  N WRG    QL V D +
Sbjct: 526 ALMPDLTAAED---VKLVGSLSENTWRGQTTLQLMVKDLA 562


>gi|301156119|emb|CBW15590.1| ssDNA exonuclease, 5'--> 3'-specific [Haemophilus parainfluenzae
           T3T1]
          Length = 574

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/562 (29%), Positives = 275/562 (48%), Gaps = 20/562 (3%)

Query: 42  IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
           ++ R+  +R++        L+ +++ ++ +P  L    +A   +V A    +KI+I GD+
Sbjct: 21  LLDRLYRSRHIKNSQE---LDRTLQSML-NPNQLHGIQQAVDLLVNAYQQQQKIVIVGDF 76

Query: 102 DVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160
           D DGA S AL +  L      +    +P+R   GYG +  + E  + +  QL++TVD G 
Sbjct: 77  DADGATSTALSVLALRMLGFTDVEYLVPNRFEQGYGLSVPVAEMAMEKDVQLLMTVDNGV 136

Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220
           +S++ + Y   QG+ V++ DHH        A A+VNPN          L   GV F +++
Sbjct: 137 SSFEGVAYLKEQGVKVLITDHHLPPEILPNADAIVNPNLQQCGFPSKCLAGVGVAFYLML 196

Query: 221 LIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277
            +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R ++  P
Sbjct: 197 ALRAKFRELGIFTAETQPNFTELLDLVALGTIADVVPLDQNNRILAHQGLMRIRAKRCRP 256

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G+ AL E  N     + + +LG+ I P +NA GR+   ++G  LL+++  QE    A+ L
Sbjct: 257 GIIALAEVANREVEKLCSADLGFAIAPRLNAAGRLDNMSVGVELLLAESMQEARAQALDL 316

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395
           D LNQ R+ +E  M  +A            +    I +    WH G++G++A+R+K+++ 
Sbjct: 317 DSLNQARKEIEQGMKLEALEICRNLTALSDELPMGIALFQPDWHQGVLGIVASRIKDQYH 376

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNF 453
           RP  A + +++G   GS RSIEG  +  ++         +++K GGHAMAAGL+++   F
Sbjct: 377 RPVIAFAQDQEGILKGSARSIEGLHMRDVLERIHSQHPDMILKFGGHAMAAGLSIKESFF 436

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                 F +   + +       V   DG L A+  +I   ++++S GP+G   P PVF  
Sbjct: 437 PDFQKIFNQTVQDWLNEDQLQGVIWTDGELQANEFSIETAEVIKSGGPWGQAFPEPVFDG 496

Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
              K+   R +     HL+M  E ++    L AIAF +      +  +    K+      
Sbjct: 497 E-FKIFEQRAIGQNQNHLKMLVEPKNGGPLLDAIAFNIDTRYYPDLSI----KQAKFAYK 551

Query: 571 LCVNYWRGSKRCQLRVLDASPV 592
           L +N +RG++  QL V    P+
Sbjct: 552 LEINEFRGNRNLQLLVDYIEPI 573


>gi|254797063|ref|YP_003081901.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia
           risticii str. Illinois]
 gi|254590309|gb|ACT69671.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia
           risticii str. Illinois]
          Length = 577

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/585 (35%), Positives = 314/585 (53%), Gaps = 21/585 (3%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
            SI G  W+           L + QK  +   VA VL NR  + D    FLNP ++  +P
Sbjct: 6   KSIKGSVWIH--NHVPSKELLFLRQKFGLSLTVASVLYNRVGADDDIATFLNPKLKHTLP 63

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP  L    +   RI++AI   EKI+I+GDYDVDGA S AL+  +        ++YIPDR
Sbjct: 64  DPFSLLGMKEGIERILRAISEDEKIVIYGDYDVDGATSSALLKNYFREIGKKVDIYIPDR 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           I +GYGPN +   +   EG  L ITVDCG  ++  ++ A   G+D+IV+DHH       P
Sbjct: 124 ITEGYGPNKAAFMQLKKEGYTLCITVDCGILAHAEIEVANTIGLDIIVVDHHISADVIPP 183

Query: 191 AYALVNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVA 246
           A A++NPNR+D  +++   HL A GV FL+L+ +  +LR           +L++ LDLVA
Sbjct: 184 ATAVINPNRIDQPNVAYTEHLAAVGVSFLLLIGLNVVLRAKGFFDNKKEPNLINYLDLVA 243

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCDVV L G+NRA+V +GL V  ++ N GL  L + + + S + A +LGY+IGP IN
Sbjct: 244 LGTVCDVVRLTGINRAFVKQGLKVIDQRKNLGLSILTKELKLFSTLEAYHLGYVIGPHIN 303

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGRI +S+LGSRLL + +  E E +A  L VLN  R+ +E A L++   +V     +  
Sbjct: 304 AGGRISQSSLGSRLLSTQNPAEAEEIATTLCVLNLKRKEIERAALQEVITQV-----EKT 358

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
              +I+     WH GI+G++A+R+K+ +  P+  +S  +      S RSI+G +IG  V 
Sbjct: 359 SKKIILAASANWHQGIIGIVASRIKDLYHLPTIILS-IDGNIAKASARSIKGANIGMAVI 417

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A E G++++GGGH MAAG + E      + +FF+++   +     T     ID  L   
Sbjct: 418 AAKESGLIIEGGGHKMAAGFSCETEKIPAIREFFEEYFKEV----DTQESIHIDSELYID 473

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFES-QDSETLQAI 544
            +   L D L+   P+G+GNP P F   + ++ + RV+    H+  T    +    ++ I
Sbjct: 474 TITSDLCDDLKILAPHGSGNPEPKFVLKDVRVVTSRVIGEDGHIACTLRDVRTHTVIRGI 533

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AFR     L E ++            +  +    S + Q+ + DA
Sbjct: 534 AFRA-DPILKEAILNCEVTNF--LVKIKADNLGYSNKPQVIIEDA 575


>gi|262190654|ref|ZP_06048888.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae CT
           5369-93]
 gi|262033468|gb|EEY51972.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae CT
           5369-93]
          Length = 545

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/538 (31%), Positives = 266/538 (49%), Gaps = 21/538 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           +     L   D+A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +
Sbjct: 11  LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  DGYG +P ++++ I  GA++I+TVD G +S + ++YA  +G+ V+V DHH    E
Sbjct: 71  PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243
                A+VNPN          L   GV F +++ +   +RQ             L+ L+D
Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMAEPKLMELID 190

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG++ALIE        + A + G+ +
Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359
           GP INA GR+ + + G  LL+ ++      +A +LD LNQ R+ +E  M     A  + L
Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
              DD +    +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G 
Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370

Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
            +   +        GI++K GGHAMAAGLT+E  NF R C  F +     +       + 
Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGII 430

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535
             DG L     ++   ++L + GP+G   P P+F     K+   ++V   HL++  E   
Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489

Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  +  IAF V      +    +  K + +   L +N +RG++  QL +    
Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 543


>gi|110799179|ref|YP_696745.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens ATCC 13124]
 gi|110673826|gb|ABG82813.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens ATCC 13124]
          Length = 592

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/603 (29%), Positives = 302/603 (50%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  +P ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NNPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEVPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADTLAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I + 
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +S   E  ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|255320014|ref|ZP_05361210.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           radioresistens SK82]
 gi|262380520|ref|ZP_06073674.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           radioresistens SH164]
 gi|255302882|gb|EET82103.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           radioresistens SK82]
 gi|262297966|gb|EEY85881.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           radioresistens SH164]
          Length = 570

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/560 (30%), Positives = 271/560 (48%), Gaps = 20/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +   +A +L  R V+ +     L   ++ L+     L   ++A   I QAI   +KI+I
Sbjct: 20  HVSPFLAHILARRGVASEQE---LELRLKYLLSP--CLKGLEQAVEIINQAIDQQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L     +    +PDR   GYG  P++ +  F      L+ITV
Sbjct: 75  VGDYDADGATSTALMILALRDMGADVAYLVPDRFKYGYGLTPAIADLAFTRFTPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S++ ++ A + G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHEGVKQAQDHGMQVIITDHHLTTKETPAAEAVVNPNQLGCNFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +    ++ ++     ++   LDLVAL T  DV  L   NR  V  GL    ++Q 
Sbjct: 195 YVLANLCSFRKRADQ--SVSNITQYLDLVALGTYADVASLDYNNRILVDAGLKRIQQQQC 252

Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL++        + A++LG+++GP INA GR+    +G   L++ D +    LA 
Sbjct: 253 RPGILALLDIAGREPAALKAQDLGFVLGPRINAAGRMETMEIGIECLLAPDLENAYPLAR 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E+ M ++A   +   Q         +++  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIERRQIEAQMKQEALRYLEQLQLSKENIPPALIMFEEHWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + +EDG    GS RS+EG  I   +         ++   GGHA AAGLT+ +
Sbjct: 373 FHRPSIVFAADEDGIHIKGSARSVEGIHIRDCIEQIAEQYPHLVRYFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F      F +    +    + +     DG L   A+ +  +D++E  GP+G   P+PV
Sbjct: 433 EHFLEFKQVFIQLIAGM-DETLLSATLWTDGELPVEALVLDTVDLIEKLGPWGQKFPSPV 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R +   HL++     + + + AIAF         F       ++ +   
Sbjct: 492 FEGI-FKVVDFRWLKETHLKLRLALNNGQVVDAIAFNAKDR----FEYDPENDQVDLVYE 546

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L  N + G+   QLR++   
Sbjct: 547 LERNEFNGNTGLQLRIIHLK 566


>gi|312867396|ref|ZP_07727605.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parasanguinis F0405]
 gi|311097097|gb|EFQ55332.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parasanguinis F0405]
          Length = 741

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W            LA+ +K  +   VA +L  R + + +  +DFL P +  L  DP
Sbjct: 4   SKYDWQLASPSAD-EAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI +AI + E+I+++GDYD DG  S ++M   L        +Y+P+R  
Sbjct: 62  YLLHDMEKAVERIRRAIEDYEQILVYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G     A+  A   G+DVIV DHH +      A
Sbjct: 122 DGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P   D      +L   GV F +   +   +            + LLDLVA+ T+ 
Sbjct: 182 YAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVP-----------VDLLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL V +     GL+ L+E   I    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ +   N+ R+ +  A+ ++A+  V          S 
Sbjct: 291 LDDPNPAIELLTGFDDEEAREIALMIHQKNEERKEIVQAIYDEAKTMV------DPSLSA 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   +S  EDG+  GS RS E  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVVVLS-IEDGRAKGSARSPESVNI--FEALDPH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L      +       L +     ID  L+ + + +
Sbjct: 402 RSLFVAFGGHAGAAGMTLEVDQLPALSQALTNYIREEKIDLSSKSSLAIDEELHLTELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   +   P+G  N  PVF   N K++  R +     HL++    +D  T + +AF +
Sbjct: 462 ETLKNFDRLSPFGMDNKKPVFLVRNFKVEGARSMGAGNTHLKLKISQED-ATFEVVAFGL 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ + + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSLEA----EFAQAQDLELAVQLSVNQWNGQTTLQLMLVDARVDGVQLFNIR 568


>gi|168212898|ref|ZP_02638523.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens CPE str. F4969]
 gi|170715541|gb|EDT27723.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens CPE str. F4969]
          Length = 592

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/603 (29%), Positives = 303/603 (50%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  DP ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G++VI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMNVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEVPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADTLAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++  +VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I + 
Sbjct: 354 MENDNVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +S   E  ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|306833197|ref|ZP_07466326.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus bovis
           ATCC 700338]
 gi|304424564|gb|EFM27701.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus bovis
           ATCC 700338]
          Length = 736

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/593 (29%), Positives = 286/593 (48%), Gaps = 34/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S + W ++  +   N    +T+K  + ++ +++L +R V   +    FL+  +  L  DP
Sbjct: 4   SKYNWKNIEKEPD-NGFFELTKKEKLTELASQILYSRGVDTAEKLIQFLSTDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S ++M   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVNRIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G    +A+ YA +QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGNEAIAYAQSQGVDVIVTDHHGLPAELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P   +      +L   GV F V   +   +              +LDLVA+ T+ 
Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL  LI+  ++    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELIKVSDVDMADVNEETVGFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A  ++  N+ R+ +   + ++A + V  +        V
Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQKIFDEAMSMVDLE------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGIAKGSARSIEAINI--FHALDEH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N  +L      +       L       ID VL  S +N+
Sbjct: 402 RDLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEINL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  LE   P+G  NP PVF   +  ++  R +     HL++   +Q +  +  +AF  
Sbjct: 462 DTVHSLEKLAPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                       + + + +   L +N W G    QL + DA  VEG      +
Sbjct: 521 GHL----AQEFQQVQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568


>gi|306829077|ref|ZP_07462267.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           ATCC 6249]
 gi|304428163|gb|EFM31253.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis
           ATCC 6249]
          Length = 739

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/591 (29%), Positives = 282/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +  +   K FL PS+  L  DP +
Sbjct: 6   YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQNEESLKKFLEPSLEDLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+I+GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHSDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRIMVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+   +++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   +  ++S R +     HL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPVFYIRDFNVESARSMGAGNTHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|258539770|ref|YP_003174269.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           rhamnosus Lc 705]
 gi|257151446|emb|CAR90418.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           rhamnosus Lc 705]
          Length = 764

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/585 (27%), Positives = 275/585 (47%), Gaps = 27/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           + ++W     Q        ++Q  A+P  +A +L  R + +    + F++P I  L  DP
Sbjct: 2   TQYQWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKNKPDYEAFVHPDISRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI   +KI I+GDYDVDG  S ++M+  L       +++IPDR  
Sbjct: 60  FALHDMDKAVARILEAIEQDQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G      +  A   G+DV+V DHH++      A 
Sbjct: 120 DGYGPNAEVYTYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPETLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVKLTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + S + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMA--QTPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E   +P+  ++  ++G    GSGRSIE + +   +  A  
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATCKPTLIMNIADNGVTAKGSGRSIEAYHLFNALEPA-- 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +  +V  GGH MA GLT +      +    +  A  ++   +  P   I   L    + +
Sbjct: 405 KDKMVHFGGHHMAVGLTAKTAELSAIHAQMEAAASTMLK-TVPKPALPIAARLEVGDLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
              +++    P+G GNP P F+     +Q+++ +   +  + F+      +  I F    
Sbjct: 464 EHYELIRQLAPFGQGNPEPTFSVRPQVVQNVKPIGKENAHLRFQIDQG--VNVIGFGFG- 520

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                    +  + + +   L  N W+G+   QL + D +  +  
Sbjct: 521 ---SAAATLAEAQAIKLAVQLDQNTWQGNTSLQLMLKDYAVKQPQ 562


>gi|322389845|ref|ZP_08063386.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parasanguinis ATCC 903]
 gi|321143426|gb|EFX38863.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parasanguinis ATCC 903]
          Length = 741

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W            LA+ +K  +   VA +L  R + + +  +DFL P +  L  DP
Sbjct: 4   SKYDWQLASPSAD-EAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI +AI + E+I+I+GDYD DG  S ++M   L        +Y+P+R  
Sbjct: 62  YLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G     A+  A   G+DVIV DHH +      A
Sbjct: 122 DGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P   D      +L   GV F +   +   +            + LLDLVA+ T+ 
Sbjct: 182 YAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVP-----------VDLLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL V +     GL+ L+E   I    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ +   N+ R+ +  ++ ++A+  V          S 
Sbjct: 291 LDDPNPAIELLTGFDDEEAHEIALMIHQKNEERKEIVQSIYDEAKTMV------DPSLSA 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   +S  EDG+  GS RS E  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVVVLS-IEDGRAKGSARSPESVNI--FDALDPH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T++      L      +       L +     ID  L+ + + +
Sbjct: 402 RSLFVAFGGHAGAAGMTLDVDQLPALSQALTDYIAEQEIDLSSKSSLAIDEELHLTELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   +   P+G  N  PVF   N K++  R +     HL++    +D  T + +AF +
Sbjct: 462 ETLKSFDRLSPFGIDNKKPVFLVRNFKVEGARSMGAGNTHLKLKISQED-ATFEVVAFGL 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ + + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSLEA----EFAQAQDLELAVQLSVNQWNGQTTLQLMLVDARVDGVQLFNIR 568


>gi|308050771|ref|YP_003914337.1| exonuclease RecJ [Ferrimonas balearica DSM 9799]
 gi|307632961|gb|ADN77263.1| exonuclease RecJ [Ferrimonas balearica DSM 9799]
          Length = 573

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 276/564 (48%), Gaps = 19/564 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ ++   R V+       L   ++ L+ +P  L+   + A  +  A+   ++I+I 
Sbjct: 19  LPPLLRQIYARRGVTGA---HELVTELKGLL-NPATLSGAPEGAAMLADALAAQKRILIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL M  L        +  +P+R   GYG +P L+E     GA+++ITVD
Sbjct: 75  GDFDADGATSSALCMLALRAFGGRHLDFLVPNRFDFGYGLSPELVEVAAERGAEVLITVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +++  +  A   G+ VIV DHH        A  ++NPNR         +   GV F 
Sbjct: 135 NGISAHAGVDAAKAAGMTVIVTDHHLPGETLPDADVIINPNRDACPFASKSMAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   LR+            ++  LLD+VAL TV DVVPL   NR  V +GL   R 
Sbjct: 195 LMLALRGELRRRQWFAQQGLNEPNMAELLDVVALGTVADVVPLDPNNRLLVHQGLQRIRA 254

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG++AL+E  N     + A +LG+ +GP +NA GR+ +  LG   L++D+  E  +
Sbjct: 255 GRCRPGIRALLEVSNREPSRLVASDLGFTVGPRLNAAGRLDDMALGIECLLTDNMMEARL 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A +LD LN+ RR +E  M E+A   +            + +    WH G++G+LA+R+K
Sbjct: 315 IASQLDALNRERREIEQGMQEEAIRVLERLDLGKDLPWGVALYQSDWHQGVIGILASRIK 374

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           E++ RP  A +    G+  GS RSI G  +  ++        G+++K GGHAMAAGL+++
Sbjct: 375 ERYHRPVIAFADAGGGEVKGSARSIPGLHMRDLLERIDTQHPGLILKFGGHAMAAGLSLK 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             ++ R  + +       +     T     DG L A+ + +    ML  AGP+G G   P
Sbjct: 435 EQDYPRFAELYDAEVRVQLDEAALTGELLSDGELTAADLCLDTARMLREAGPWGQGFAEP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   R+V   HL++  E++     L AIAF V              + + + 
Sbjct: 495 MFDGR-FRILDQRLVGQKHLKLALETECGGRQLDAIAFNVDLGTWP----NGAIQWVELV 549

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L +N+W+G    QL V    P 
Sbjct: 550 YKLDINHWQGRDSVQLLVEHLKPA 573


>gi|237729832|ref|ZP_04560313.1| ssDNA exonuclease RecJ [Citrobacter sp. 30_2]
 gi|226908438|gb|EEH94356.1| ssDNA exonuclease RecJ [Citrobacter sp. 30_2]
          Length = 577

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/566 (32%), Positives = 284/566 (50%), Gaps = 20/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+  +R V        L  S++ ++P    L   +KA   +  A     +I++
Sbjct: 21  DLPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQHLNGVEKAVEILYNAFRAGTRIIV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TV
Sbjct: 77  VGDFDADGATSTALSILAMRALGCSNVDYLVPNRFEDGYGLSPEVVDQAYARGAQLIVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +++A   GI V+V DHH        A A++NPN  D       L   GV F
Sbjct: 137 DNGISSHAGVEHARTLGIPVVVTDHHLPGDTLPGAEAIINPNLHDCEFPSKSLAGVGVAF 196

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +++ +   LR             +L  LLDLVAL TV DVVPL   NR    +GL   R
Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIR 256

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  
Sbjct: 257 AGKCRPGIKALLEISNRDPLKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           +LA +LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R
Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASR 376

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL+
Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHPGMIIKFGGHAMAAGLS 436

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +E   F R    F +     +   +       DG LNAS + + +  ML  AGP+G   P
Sbjct: 437 LEEAQFERFQQRFGELVTEWLDPSLLQGEVVSDGPLNASEMTMEVAQMLRDAGPWGQMFP 496

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F   + +L   R+V   HL++  E       L  IAF V  T   +    +  + + 
Sbjct: 497 EPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTTCWPD----NGVREVQ 551

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           +   L +N +RG++  Q+ + +  P+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPL 577


>gi|87311088|ref|ZP_01093212.1| single-strand DNA-specific exonuclease [Blastopirellula marina DSM
           3645]
 gi|87286179|gb|EAQ78089.1| single-strand DNA-specific exonuclease [Blastopirellula marina DSM
           3645]
          Length = 587

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/593 (29%), Positives = 273/593 (46%), Gaps = 24/593 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW          R   + Q   +P +VA++L++R +   +  + FL      L  DP +
Sbjct: 3   KRWRIFPHDA--ARIRQLEQSAGVPPVVAQLLISRGICDPNAIRGFLEAKFSDLR-DPDL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L     A  RI  AI    +I I+GDYD DG    A++ R L     +   Y+P R  +G
Sbjct: 60  LPGVTAAVERIDAAIKAKRRITIYGDYDADGITGSAILYRCLQTLGADVGYYVPSRFDEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +EK +  G  L+ITVDCG  S      A   G+++I+ DHH++      A A+
Sbjct: 120 YGLNSEALEKLVQRGTHLLITVDCGIASVKEADRAKELGLELIITDHHEMAERLPDAAAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL----DLVALATV 250
           V+P         G LC AGV F +   + +     N   +   L + L     L ++ TV
Sbjct: 180 VHPRLPGTNYPFGGLCGAGVAFKLAWALCQK--ASNARRVTDRLRNFLLTAVGLASIGTV 237

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITAENLGYMIGPSINAG 308
            DVVPL+  NR  V  GL   R    PG++AL+E         +T+E++G+MIGP +NA 
Sbjct: 238 ADVVPLLDENRLIVRHGLNCLREHSVPGIEALLEVAKLGDKKQLTSEDIGFMIGPRLNAA 297

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+G++ L   LL +D  +    LA  +  LN +R  +E ++   A+ +   +  D    
Sbjct: 298 GRLGQAQLAIELLTTDSPERARALAEYIHQLNDSRGSLERSINLAAQKQAKEE-FDPVND 356

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVS 426
             +V+ G  WH G++G++A RL EK+ RP   I+ ++ G    +GS RS  G ++ + + 
Sbjct: 357 PALVLAGHGWHVGVIGIVAGRLAEKYNRPVILIALDQAGVKPGVGSARSACGLNLHEALK 416

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
               E  L+  GGHA AAGL +           F ++A + V          ID     S
Sbjct: 417 SC--EHHLLGCGGHAAAAGLQISPDKIEAFRAEFLEYAASEVTDESQIAELAIDAEAPIS 474

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVV--NLAHLQMTFESQDSETLQA 543
            +    I  +E   P+GAGN  P+      K +   + +     HL +  E      ++ 
Sbjct: 475 QLTFKTITQIEMLAPFGAGNRRPIMCASGAKLVDKPKRIGGGERHLSVHLEHH-GVRIRG 533

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
           +AF        E L +  G  + +     +N +RG    +L+++D  P E ++
Sbjct: 534 VAFGQGD--WAEPLAKHDG-LLDIAFQPVINNFRGRNNVELQLVDWKPHEANN 583


>gi|254496446|ref|ZP_05109323.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           drancourtii LLAP12]
 gi|254354302|gb|EET12960.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           drancourtii LLAP12]
          Length = 578

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/571 (30%), Positives = 269/571 (47%), Gaps = 24/571 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
             PD++ R+   R ++       L+  ++ L+P   +L   D A  R+  A+   ++I+I
Sbjct: 17  NTPDVLNRIFATRGITEA---SQLDKQLQTLLP-FNLLKGIDDACLRLETALRGQQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S A+ +  L        +  +P+R   GYG  P ++E        LIITV
Sbjct: 73  IGDFDADGATSTAVAITALRAMGAKFIDYLVPNRFEFGYGLTPQIVEVASKWQPHLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S+D ++ A   GIDV++ DHH        A A+VNPN+         +   GV+F
Sbjct: 133 DNGIASFDGVEKANELGIDVLITDHHLPADTIPNACAIVNPNQKGCEFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVA 271
            V++ + R L              ++ S LDLVAL TV DVV L   NR  V +G+  + 
Sbjct: 193 YVMLALRRHLTNAGWFSEMHIPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMARIR 252

Query: 272 RRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     G+KALIE      + +   +LG+ I P +NA GR+ +  LG   LIS D Q+  
Sbjct: 253 QGHCRDGIKALIEVAGRDCARLRESDLGFAIAPRLNAAGRLDDMALGIECLISSDLQQAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-----VVEGDRWHPGIVGL 385
               +LD LNQ R+ +E+ M EQA   +                   +    WH G++G+
Sbjct: 313 NYCQQLDELNQERKQIETEMKEQAMLALDKLAASNDYKGKHLPIALCLFDKTWHQGVIGI 372

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMA 443
           LA R+KE++ RP  A +   DG+  GS RS+   +I  +++       G++VK GGHAMA
Sbjct: 373 LAGRMKERYHRPVIAFAEVSDGELKGSARSVPDLNIRDVLAAIDKDYPGLIVKFGGHAMA 432

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
           AGL++   +     D      +  +           DG L +   ++    +++ AGP+G
Sbjct: 433 AGLSIHPQSLSAFRDALAAEVNKHLDLSQCEGELFTDGPLQSDEFSLETAQLIQQAGPWG 492

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRG 562
                PVF     ++   R+V   HL+MT  S Q  + + AIAF V            R 
Sbjct: 493 QQFAEPVFD-NVFEVLDQRLVGQKHLKMTLVSKQGGQQVDAIAFNVDLKAWP----NHRA 547

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           K +H    L +N+++G  R QL +   +  E
Sbjct: 548 KYVHAAYKLDINFFQGRTRLQLMIQAMNVAE 578


>gi|110803111|ref|YP_699345.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens SM101]
 gi|110683612|gb|ABG86982.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens SM101]
          Length = 592

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/603 (28%), Positives = 300/603 (49%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  DP ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A   G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILNEEGTKVILTCDNGIAAFEEIDLAEKLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++  +VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I   
Sbjct: 354 MENDNVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNI--F 410

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              +  + ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 411 EELSKCKELISKFGGHPMAAGLSVEEKNIPLLRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSIDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|283798560|ref|ZP_06347713.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp.
           M62/1]
 gi|291073708|gb|EFE11072.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp.
           M62/1]
 gi|295092426|emb|CBK78533.1| exonuclease RecJ [Clostridium cf. saccharolyticum K10]
 gi|295115771|emb|CBL36618.1| exonuclease RecJ [butyrate-producing bacterium SM4/1]
          Length = 569

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/580 (28%), Positives = 275/580 (47%), Gaps = 31/580 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W+    +        I ++  I  + ARV+ NR +   +  + +L  ++  L   P +L 
Sbjct: 6   WMLQTKRADFGV---IAERFGIDPVTARVIRNRGIEGMENIERYLYGNLDGLY-SPWLLK 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D   A   + Q I   ++I I GDYD+DG  S  ++   L      A+  IPDRI DGYG
Sbjct: 62  DMKPAVEILRQKITAGKRIRIVGDYDIDGVCSTYILYTALRRLGAEADYAIPDRIKDGYG 121

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-----SEEIPA 191
            N S++ +   +G   I+T D G +++  +  A   G+ VIV DHH+V          PA
Sbjct: 122 INESIIREAHEDGIDTILTCDNGISAFSQISLAKEFGMTVIVTDHHEVPLDAEAEVIPPA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VNP + D       +C A V + ++  +Y             + L +L+  A+ATV 
Sbjct: 182 DAVVNPKQRDCRYPFPEICGAVVAYKLVEALYEEYGI-----AREEWLDMLEFAAIATVG 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           DV+ L   NR  V  GL       N GLK L E+ N+  S ITA ++G++IGP +NAGGR
Sbjct: 237 DVMRLQDENRIIVKYGLRRMAETKNLGLKKLAEKNNLDLSTITAYHIGFVIGPCLNAGGR 296

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  + L   +L+++   E E LA +L  LN  R+ M      +A+    T+  D +   V
Sbjct: 297 LQTAKLALSMLLAETEDEAEALAQELKSLNDMRKDMTEQWTAEAKLLADTRYRDDK---V 353

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV     H  + G++A RL+E   +P+  ++  E+    GSGRSIE + +      +  
Sbjct: 354 LVVFLPECHESLAGIIAGRLREYCQKPALVLTRGEEAV-KGSGRSIEAYHM--FKKLSEV 410

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + +L+K GGH MAAGL++   N         +  ++ +          ID  +    +  
Sbjct: 411 KELLLKFGGHPMAAGLSLLEENIEPFRKALNE--NSGLTEEDFKAKVWIDVPMPIDYIKE 468

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRV 548
            L++ L+   P+G GN  P+FA    +++S RV+      ++M  E Q    +  + F  
Sbjct: 469 RLVEELKILEPFGQGNEKPLFAQKGVRIRSCRVIGKNKNVVKMVLEGQGGRAMDGMLF-- 526

Query: 549 YGTPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVL 587
             T    F  +  G+R + +  +  +N + GS+  Q+ + 
Sbjct: 527 --TDGLAFEEERNGRRMLDIVYYPEINEYNGSRNIQVVIR 564


>gi|88860262|ref|ZP_01134900.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Pseudoalteromonas tunicata D2]
 gi|88817460|gb|EAR27277.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific
           [Pseudoalteromonas tunicata D2]
          Length = 580

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/562 (30%), Positives = 275/562 (48%), Gaps = 19/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ ++  +R V        LN +   L+    +L   D A+  +++A+ N +KI+I 
Sbjct: 25  LHPVIKQIYASRGVKHSQE---LNNNAASLL-SFNLLKGIDTASEILIKALKNQQKILIV 80

Query: 99  GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S A ++  L     ++ +  +P+R   GYG +P+L ++ +  GA L+ITVD
Sbjct: 81  GDFDADGATSTATLVSGLKMFGFLHVDYLVPNRFELGYGLSPALAKQVVALGADLLITVD 140

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +    ++     G+ VIV DHH    +   A A+VNPN+         L   GV F 
Sbjct: 141 NGISCVAGVEIVKAAGMQVIVTDHHLPGEQLPAADAIVNPNQHGCSFPSKSLAGVGVAFY 200

Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +LV +   LR +           ++  LLDLVAL TV DVV L   NR  V +GL   R 
Sbjct: 201 LLVALRHYLRIEQWFANLGQAEPNIAQLLDLVALGTVADVVALDANNRILVHQGLARIRS 260

Query: 274 -QGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            Q  PG+ ALIE    I + ++A + G+ + P +NA GR+ + +LG   L+S +    + 
Sbjct: 261 GQTRPGIAALIEVAKRIPARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSPEINHAKR 320

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E +M  +A+  +       Q     + +  D WH G++G+LA RL
Sbjct: 321 IAGELDSLNIERREIEQSMQVEAQVALDKLLKAQQSVPDAVCLYQDDWHQGVIGILAGRL 380

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTV 448
           KEK+ RP+   +  ++ +  GS RSIEG  +   +     +    ++K GGHAMAAGL++
Sbjct: 381 KEKYHRPTIIFALGDNDELKGSCRSIEGLHMRDALEAINTQHPDLIIKFGGHAMAAGLSI 440

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  NF R    F      I+       +   DG L +    +    +++ +GP+G     
Sbjct: 441 QANNFERFKAVFLDAVSAILTPEHKQSLVLTDGELPSECYTLDFAQLIKQSGPWGQAFAE 500

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           PVFA     L   R+V   HL++  + +    L AIAF V           +   ++H  
Sbjct: 501 PVFADT-FMLIQQRLVGEKHLKLVLKHRSGLLLDAIAFNVDLQRWP----NAAVSQVHAV 555

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L +N +RG    QL V +  
Sbjct: 556 FVLDINEFRGKFSLQLLVRELQ 577


>gi|229552401|ref|ZP_04441126.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           rhamnosus LMS2-1]
 gi|229314227|gb|EEN80200.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           rhamnosus LMS2-1]
          Length = 764

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/585 (28%), Positives = 276/585 (47%), Gaps = 27/585 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           + ++W     Q        ++Q  A+P  +A +L  R + +    + F++P I  L  DP
Sbjct: 2   TQYQWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKNKPDYEAFVHPDISRLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI++AI   +KI I+GDYDVDG  S ++M+  L       +++IPDR  
Sbjct: 60  FALHDMDKAVARILEAIEQDQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  +       G QL+ITVD G      +  A   G+DV+V DHH++      A 
Sbjct: 120 DGYGPNAEVYTYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPETLPHAV 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +     G L  AGV F V   +           L    L  +DL AL T+ D
Sbjct: 180 AVVHPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           +V L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+
Sbjct: 229 LVKLTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++N G  LL + +      LA ++  LNQ R+ + S + ++A      Q  + Q A  +
Sbjct: 289 GDANPGVTLLTTFEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMA--QTPENQAAKTL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G+VG++A+++ E  G+P+  ++  ++G    GSGRSIE + +   +  A  
Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADNGVTAKGSGRSIEAYHLFNALEPA-- 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +  +V  GGH MA GLT +      +    +  A  ++   +  P   I   L    + +
Sbjct: 405 KDKMVHFGGHHMAVGLTAKTAELSAIHAQMEAAASTMLK-TVPKPALPIAARLEVGDLTL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
              +++    P+G GNP P F+     +Q+++ +   +  + F+      +  I F    
Sbjct: 464 EHYELIRQLAPFGQGNPEPTFSVRPQVVQNVKPIGKENAHLRFQIDQG--VNVIGFGFG- 520

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                    +  + + +   L  N W+G+   QL + D +  +  
Sbjct: 521 ---SAAATLAEAQAIKLAVQLDQNTWQGNTSLQLMLKDYAVKQPQ 562


>gi|87122935|ref|ZP_01078799.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp.
           MED121]
 gi|86161784|gb|EAQ63085.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp.
           MED121]
          Length = 579

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 275/565 (48%), Gaps = 21/565 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P  + R+L +RN++ +   ++    +  L+  P  L     A   +  AI   EKI+I 
Sbjct: 25  LPLTMQRILQSRNIASEAELEY---RLASLLR-PNELLGLTPAVTILADAIEAGEKILIV 80

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S +L +  +      +    +P+R   GYG  P ++E        +++TVD
Sbjct: 81  GDFDADGATSTSLGILAMQAMGAIDPEFLVPNRFEYGYGLTPEIVEVAKESKPAVLVTVD 140

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + +Q A + GI V+V DHH    +   A A+VNPN+         +   GV+F 
Sbjct: 141 NGISSIEGVQAAKSYGIKVVVTDHHLPGDDVPQADAIVNPNQHGCGFNSKAMAGVGVIFY 200

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           V+  +   L+              +   LDLVAL TV DVVPL   NR  V +GL   + 
Sbjct: 201 VMSGLRAELKARRWFELQHIPEPRMADYLDLVALGTVADVVPLDANNRILVKQGLQRIQA 260

Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
               PG+ AL+E  N   S I A +LG+ +GP +NA GR+ + +LG   L++ ++Q+ + 
Sbjct: 261 GFARPGILALLEVANRDVSQIKASDLGFAVGPRLNAAGRLDDMSLGIACLLTSNAQQAKR 320

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390
           LA +LD LN+ R+ +ES M +QAE  +     D Q   + +    D WH G++G+LA+R+
Sbjct: 321 LAQELDQLNRERKDIESEMKQQAEFALEKIVADEQDLPNGMCFYDDTWHQGVIGILASRM 380

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           K+K  RP  A +  +D +  GS RSI G  I   +         +L K GGHAMAAG+++
Sbjct: 381 KDKCYRPVIAFAKVDDEEIKGSARSIPGLHIRDALDLLAKRYPHLLSKFGGHAMAAGMSI 440

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  ++      F +    +V A         DG L A   +++  +++   GP+G   P 
Sbjct: 441 KEAHYPEFVKAFDEVVTELVSASDLEDCLLTDGSLRAEDFSLSFAELIRQCGPWGQMFPE 500

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           PVF     +L   R+V   HL++     +    + AIAF +           +  ++  V
Sbjct: 501 PVFDG-VFELIQQRIVGQKHLKLLLREPNEGLLIDAIAFFIDLEQWP-----NNAEQARV 554

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L +N +RG +  QL V     V
Sbjct: 555 VFKLDINEFRGQRNIQLLVDYIEAV 579


>gi|325578212|ref|ZP_08148347.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159948|gb|EGC72077.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 575

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/562 (29%), Positives = 277/562 (49%), Gaps = 20/562 (3%)

Query: 42  IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
           ++ R+  +R++        L+ +++ ++ +P  L    +A   +V+A    +KI+I GD+
Sbjct: 21  LLDRLYRSRHIKNSQE---LDRTLQSML-NPNQLYGIQQAVDLLVEAYQQQQKIVIVGDF 76

Query: 102 DVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160
           D DGA S AL +  L      +    +P+R   GYG +  + E  + +G QL++TVD G 
Sbjct: 77  DADGATSTALSVLALCMLGFTDVEYLVPNRFEQGYGLSVPVAEMAMEKGVQLLMTVDNGV 136

Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220
           +S++ + Y   QGI V++ DHH        A A+VNPN          L   GV F +++
Sbjct: 137 SSFEGVAYLKEQGIKVLITDHHLPPEILPNADAIVNPNLQQCDFPSKCLAGVGVAFYLML 196

Query: 221 LIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277
            +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  R ++  P
Sbjct: 197 ALRAKFRELGIFTAETQPNFTELLDLVALGTIADVVPLDQNNRILAHQGLMRIRAKRCRP 256

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G+ AL E  N     + + +LG+ I P +NA GR+   ++G  LL+++  QE    A+ L
Sbjct: 257 GIIALAEVANREVEKLCSADLGFAIAPRLNAAGRLDNMSVGVELLLAESMQEAREQALDL 316

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395
           D LNQ R+ +E  M  +A            +    I +    WH G++G++A+R+K+++ 
Sbjct: 317 DSLNQARKEIEQGMKLEALEICRNLTALSDELPMGITLFQKDWHQGVLGIVASRIKDQYH 376

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNF 453
           RP  A + +++G   GS RSIEG  +  ++         +++K GGHAMAAGL+++   F
Sbjct: 377 RPVIAFAQDQEGIIKGSARSIEGLHMRDVLERIHSQHPDMILKFGGHAMAAGLSIKESFF 436

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                 F +   + +       V   DG L A+  +I   ++++S GP+G   P PVF  
Sbjct: 437 SDFQKIFNQTVQDWLNEDQLQGVIWTDGELQANEFSIETAEVIKSGGPWGQAFPEPVFDG 496

Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
              K+   R +     HL+M  E ++    L AIAF +      +  +    K+      
Sbjct: 497 E-FKIFEQRTIGQNQNHLKMLVEPRNGGPLLDAIAFNIDTRYYPDLSI----KQARFAYK 551

Query: 571 LCVNYWRGSKRCQLRVLDASPV 592
           L +N +RG++  QL V    PV
Sbjct: 552 LEINEFRGNRNVQLLVDYIEPV 573


>gi|289168420|ref|YP_003446689.1| single-stranded DNA-specific exonuclease [Streptococcus mitis B6]
 gi|288907987|emb|CBJ22827.1| single-stranded DNA-specific exonuclease [Streptococcus mitis B6]
          Length = 788

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W      E       I +K  +   VAR+L  R +   +  K FL PS+  L  DP +
Sbjct: 54  YEWQFAPQVED-ADFTKIAKKAGLGSEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 111

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 112 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 171

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A++ A + G+DVIV DHH +      AYA
Sbjct: 172 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 231

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 232 IVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 280

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 281 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 340

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 341 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 394

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 395 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 451

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  LN   +++  
Sbjct: 452 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAAGKNKLNLDEELNLETLSLET 511

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  PVF   + +++S R +    AHL++   S+   + + +AF    
Sbjct: 512 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 570

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    ++ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 571 W----ATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 616


>gi|168215692|ref|ZP_02641317.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens NCTC 8239]
 gi|182382087|gb|EDT79566.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens NCTC 8239]
          Length = 592

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/603 (28%), Positives = 302/603 (50%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  +P ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NNPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEVPKAYAVINPKQDDCNYPFKSLCGAGISFKFICALYKELGI-----PQKEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL +L +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEILNNTKNKGLISLKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I + 
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +S   E  ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|70728502|ref|YP_258251.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           fluorescens Pf-5]
 gi|68342801|gb|AAY90407.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
           fluorescens Pf-5]
          Length = 569

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/562 (31%), Positives = 276/562 (49%), Gaps = 18/562 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V    + + L+ S+  L+P    L   D A   +V A+   ++I+I
Sbjct: 17  DLPPLLTRLYAARGV---QSVEELDKSLARLIPY-QQLKGIDAAVDLLVTALDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++   +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGLLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCEFPSKALAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+SDD      +
Sbjct: 253 RARPGLKAILEVAKRDHSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLSDDVSAARAM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD LNQ+R+ +E  M  +A A++     +      + +    WH G++G+LA+RLKE
Sbjct: 313 AAQLDELNQDRKSIEQGMQREALAQLKELPVE-SMPFGLCLFDADWHQGVIGILASRLKE 371

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG   GS RS+ GF I   +    A    ++ K GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F +     +     T     DG L     ++ L   L  AGP+G   P P+
Sbjct: 432 QNFPAFAEAFDEEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPM 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     +L   R+V   HL++   S+     L  IAF +      E       + + +  
Sbjct: 492 FHG-VFELVEQRIVGERHLKVVLRSECGSLKLDGIAFGIDR----EVWPNPTIRWVELAY 546

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L +N +RG +  QL +    P
Sbjct: 547 KLDLNEFRGQETVQLMIAHIEP 568


>gi|168205873|ref|ZP_02631878.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens E str. JGS1987]
 gi|170662627|gb|EDT15310.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens E str. JGS1987]
          Length = 592

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/603 (29%), Positives = 303/603 (50%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  DP ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L+ C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLTRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D +  + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I + 
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +S   E  ++ K GGH MAAGL+VE  N   L +   +     +      P  +ID  L 
Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPLLRNMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G+K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|148557626|ref|YP_001265208.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas
           wittichii RW1]
 gi|148502816|gb|ABQ71070.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas
           wittichii RW1]
          Length = 588

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 239/594 (40%), Positives = 340/594 (57%), Gaps = 14/594 (2%)

Query: 5   AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
             L V  SI G  W    G      A          D++ ++L+ R    +  +    P+
Sbjct: 4   PVLNVARSILGQPWHWRGGTVDGIDAGFEA-----DDLITQLLLARGCPREAVELHRLPT 58

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           IR  MPDP I  D D+AA R+  A+ + E + IFGDYDVDGA S AL++R L    + A 
Sbjct: 59  IRGFMPDPSIFRDMDEAAARLADAVEHGEPVTIFGDYDVDGATSAALLIRLLRDLGLRAG 118

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            YIPDR+++GYGP+   + K    G +LI+TVDCG+ +++AL+ A++ GIDVIV+DHH+ 
Sbjct: 119 FYIPDRLMEGYGPSGEALLKIGEGGTRLIVTVDCGAQAFEALKLASDAGIDVIVVDHHKC 178

Query: 185 KSEEIPAYALVNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLS 240
            +E   A+ALVNPNRLD  + +  GHL A GV FL+   + R+LR  N         L+ 
Sbjct: 179 AAELPRAFALVNPNRLDEGEGAAHGHLAAVGVAFLLGAALLRVLRARNFFATRAEPKLID 238

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           LLD+VAL TV DV  L GLNRA+V +G+ V   + N GL ALIE   +    T  +LG+ 
Sbjct: 239 LLDIVALGTVADVASLRGLNRAFVAQGIKVMAGRRNIGLAALIEASRLERAPTCTDLGFA 298

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INAGGR+G+S+LG RLL ++D  E   +A +LD LN+ RR +E A+ E+AE    +
Sbjct: 299 LGPRINAGGRVGKSDLGVRLLTTEDRDEARTIAAELDRLNEERRAIEKAVQEEAETLSGS 358

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           Q       SV VV    WHPG++G++A RLKEK GRP+  I+ ++DG G GSGRSI G D
Sbjct: 359 QG----NRSVAVVAAGGWHPGVIGIVAGRLKEKLGRPALVIALDKDGVGKGSGRSIGGVD 414

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           +G  +  A + G+LV GGGHAMAAG+TV       L DF ++   + V          +D
Sbjct: 415 LGAAILAAKDMGLLVAGGGHAMAAGVTVAPGGVDALADFLEERLASDVARARDDRALLLD 474

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540
            V+    V  +L++ LE+ GPYGAG P P  A    ++    VV   H++     +D  +
Sbjct: 475 AVVAPGGVTPSLVEALEAGGPYGAGWPAPRIAAGAVRVIKADVVGQGHVRTIVSGRDGRS 534

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           ++ IAFR   + LG+ L+ +   R + + G   V+ W      +L V DA+  +
Sbjct: 535 IKTIAFRAADSALGQALLGAGPDRTLWIAGRPKVDDWGSRPAAELHVEDAAWAD 588


>gi|171779661|ref|ZP_02920617.1| hypothetical protein STRINF_01498 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281763|gb|EDT47197.1| hypothetical protein STRINF_01498 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 734

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/592 (28%), Positives = 275/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S + W ++  +          ++  I  + +++L +R +   +    FL+  +  L  DP
Sbjct: 4   SKYNWKNIEKEPDDGFFEVTKKE-NITALASKILFSRGIDNGEKLAQFLSNDLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+I+GDYD DG  S ++M   L        +Y+P+R V
Sbjct: 62  YLLHDMDKAVARIRQAIENYEQILIYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRFV 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN  + + FI +    LIITVD G   ++A+ YA +QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNELVYKYFIEQQQVSLIITVDNGVAGHEAISYAQSQGVDVIVTDHHGLPAELPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+V+P   +      +L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKIACALLESIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + ++    GL  L++  +I    +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A  ++  N+ R+ +   + ++A   V           V
Sbjct: 291 LDDPNPAVELLTGFDDEEALSIAQMINAKNEERKEIVQKIYDEAMGMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E   +P   ++  EDG   GS RS E  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEHIAQPVIVLN-IEDGMAKGSARSTEAINI--FHALDEH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N  +L      +       L       ID VL+ S +++
Sbjct: 402 RDLFEAFGGHAGAAGMTLPVDNLEQLSQVLCDYIAENDINLAQKKTLIIDEVLDLSEIDL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  L+   P+G  N  PVF   +  ++  R +     HL++   +Q S  +  +AF  
Sbjct: 462 DTVKSLDKIAPFGMDNAKPVFEIKDFTVKQARTMGQNDAHLKLKI-AQGSTAVDLVAFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       + + + +   L +N W G    QL + DA          +
Sbjct: 521 GHL----VQELQQAQNLCLAVTLSINKWNGQTTVQLMLEDARVDGVQLIDIR 568


>gi|167855461|ref|ZP_02478225.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis
           29755]
 gi|167853390|gb|EDS24640.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis
           29755]
          Length = 576

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 181/574 (31%), Positives = 278/574 (48%), Gaps = 21/574 (3%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           Q+ +   ++ R+  +R V        L+ S++ L   P  L + D+A   ++ ++   ++
Sbjct: 14  QRLSENPLLNRIYQSRGVKSP---TELDLSLKGLHH-PKELANIDQAVDLLLDSLTRQDR 69

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           I+I GD+D DGA S AL +  L        +  IPDR   GYG + S+ E  + +GA  +
Sbjct: 70  IVIVGDFDADGATSTALAILALRQFGFQQVDYLIPDRFSQGYGLSLSVAEMVMAKGADFV 129

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           +TVD G +S++ +     QGI V+V DHH        A A+VNPN          L   G
Sbjct: 130 LTVDNGISSFEGIALLKAQGIRVLVTDHHLPADSLPNADAMVNPNLAACTFPSKSLAGVG 189

Query: 214 VVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           V+F V++ +   +R+         ++  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 190 VIFYVMMALRAKMRELGHFKEKEPNIAELLDLVALGTVADVVPLDHNNRILVNQGLNRIR 249

Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                 G++AL E        + A +LG+ I P +NA GR+   +LG  LLISD+     
Sbjct: 250 SGHCRVGIQALAEVAKRDLYALQASDLGFAIAPRLNAAGRLENMSLGVELLISDNLALAR 309

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAA 388
             A++LD LNQ R+  E  M  +A A            QA  IV+    WH G++G+LA+
Sbjct: 310 QFALELDSLNQTRKEFEQEMKAEALALCAKLPTLSQQNQAQGIVLYQPDWHQGVIGILAS 369

Query: 389 RLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAA 444
           R+K++F RP  A + E D      GS RSI G  +  ++    A  + ++VK GGHAMAA
Sbjct: 370 RIKDQFHRPVIAFAQESDDSEYLKGSARSIAGLHMRDLLERIDAKYDNLIVKFGGHAMAA 429

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GLT+ + +  +    F +  + +        V   DG L A   N+A  ++L+ AGP+G 
Sbjct: 430 GLTIHQDHLAQFQTVFDETVNEVAEPEWLQGVIYTDGELLADEFNLATAELLKQAGPWGQ 489

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
             P P F     ++   +++   HL+M  E++      AI F V      +  +    K+
Sbjct: 490 HFPEPTFEGR-FRILQQKLLAGKHLKMMVENEYGTLFDAIWFNVDVKCYPDLSI----KQ 544

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                 L +N +RG K  QL +     +E   F 
Sbjct: 545 ATFVYKLDINEFRGGKNLQLLIEYL--LEDDQFK 576


>gi|322372785|ref|ZP_08047321.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           C150]
 gi|321277827|gb|EFX54896.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           C150]
          Length = 736

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 280/592 (47%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + ++  + +  A++   R ++ + A +DFL   +  L  DP
Sbjct: 4   STYDWKINTKEPD-AGFFKLAKERGLAETAAKIAYERGITTEDALEDFLKADLSHLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G    +A+ YA  QG+DVIV DHH + ++   A
Sbjct: 122 DGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPAQLPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P   D      +L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 YAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + +     GL+ L+   ++    I+ E +G+ + P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E + +A++++  N+ R+ +   + ++A   V           V
Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLESINI--FHALDNH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             I    GGHA AAG+T+   N G+L D    + ++            +D  L  S +++
Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIETSAKNTLNLDEELKLSELSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             I  L    P+G  N  PVF   +  +   R +     HL+   + Q   +   +AF  
Sbjct: 462 DTIKSLGKLAPFGMDNKKPVFCLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFNK 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               L +   Q++G  + +   L VN W G    QL + DA       F  +
Sbjct: 521 GD--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVEGIQLFDIR 568


>gi|225860609|ref|YP_002742118.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|225728120|gb|ACO23971.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|327390346|gb|EGE88687.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA04375]
 gi|332076445|gb|EGI86908.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA41301]
          Length = 740

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I  + +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIGANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|148988977|ref|ZP_01820377.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925474|gb|EDK76551.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP6-BS73]
          Length = 740

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIIKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSIPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|332799396|ref|YP_004460895.1| single-stranded-DNA-specific exonuclease RecJ [Tepidanaerobacter
           sp. Re1]
 gi|332697131|gb|AEE91588.1| single-stranded-DNA-specific exonuclease RecJ [Tepidanaerobacter
           sp. Re1]
          Length = 861

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 184/582 (31%), Positives = 296/582 (50%), Gaps = 29/582 (4%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            + W     QE  +             ++ ++L  R + + +    ++ P +  L  DP+
Sbjct: 5   NYIWQVGSTQEVDDNYDE------FHHVILQLLKKRGIVTPEQIHGYIYPKLDNLY-DPM 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D DKA  RI +A+   +K+ I+GDYD DG  S A++M+ L +     N YIP R+ +
Sbjct: 58  LLKDMDKAVVRIKEALSKKQKVTIYGDYDADGITSCAVLMKLLKNLGGTVNYYIPSRLDE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AY 192
           GYG N   ++    +G +LIITVD G +S + +QYA++ G+DVI+ DHH+ + +    A 
Sbjct: 118 GYGLNKDAIDMIHKQGTKLIITVDNGISSCEEVQYASSLGLDVIITDHHEPQQKMPQAAI 177

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P R D       L   GV   +   +     +            LL+L A+ TV D
Sbjct: 178 AIVDPKREDCSYPFKELAGVGVALKLACALKGKDLKFG--------KELLELAAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VPL+  NR  V  GL       N GLKA++  +N     I    + Y++ P +NA GRI
Sbjct: 230 IVPLLDENRIIVKNGLDDLGNTKNLGLKAMMNLLNLNDISIEPGKISYLLAPRLNAAGRI 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
               +   LL+ +D++    LA  L+ +NQ R+ +E+ +L++A+  V+ Q  D+   ++I
Sbjct: 290 ANPEIAVELLLCEDAKRAFELATTLERINQERQTLEAKILDEAKT-VIEQEIDLDIENII 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WHPG+ G +A++L E + RP   IS + D +G GSGRSI GF++    + +   
Sbjct: 349 VISSANWHPGVTGTVASKLVEIYSRPCIIISEKGD-EGRGSGRSISGFNL--FNALSKLS 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L++ GGH  AAGL+++  N G       +           +P   ID  LN S +N+ 
Sbjct: 406 HLLIRFGGHEQAAGLSIKVENIGTFRRELNQLFVQDTVQKDASPKLDIDLELNQSDINLK 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVY 549
           L + LE   P+G GNP PVF   N  +Q++R V     HL++  +S ++  + AI F  +
Sbjct: 466 LAEQLELMKPFGYGNPKPVFMCRNLHIQNLRTVGSGDKHLKLNLKSHENN-IDAIGFN-F 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           G    +  M +    M    +L VN W+GS   QL + D   
Sbjct: 524 GLYKEDLDMATI---MDAAFYLEVNRWKGSIEPQLNIKDLRV 562


>gi|327484910|gb|AEA79317.1| Single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           LMA3894-4]
          Length = 545

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/538 (31%), Positives = 265/538 (49%), Gaps = 21/538 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           +     L   D+A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +
Sbjct: 11  LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  DGYG +P ++++ I  GA++I+TVD G +S + ++YA  +G+ V+V DHH    E
Sbjct: 71  PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243
                A+VNPN          L   GV F +++ +   +RQ             L+ L+D
Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMAEPKLMELID 190

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG++ALIE        + A + G+ +
Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359
           GP INA GR+ + + G  LL+ ++      +A +LD LNQ R+ +E  M     A  + L
Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
              DD +    +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G 
Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370

Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
            +   +        GI++K GGHAMAAGLT+E  NF   C  F +     +       + 
Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFEHFCRLFDQLVREELDEAALKGII 430

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535
             DG L     ++   ++L + GP+G   P P+F     K+   ++V   HL++  E   
Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489

Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  +  IAF V      +    +  K + +   L +N +RG++  QL +    
Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDYLE 543


>gi|116517143|ref|YP_816033.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae D39]
 gi|116077719|gb|ABJ55439.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae D39]
          Length = 740

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|303260103|ref|ZP_07346076.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP-BS293]
 gi|303261287|ref|ZP_07347235.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263952|ref|ZP_07349873.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae BS397]
 gi|303265943|ref|ZP_07351839.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae BS457]
 gi|303268325|ref|ZP_07354122.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae BS458]
 gi|302637421|gb|EFL67908.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638798|gb|EFL69260.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP-BS293]
 gi|302642163|gb|EFL72513.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae BS458]
 gi|302644527|gb|EFL74778.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae BS457]
 gi|302646357|gb|EFL76583.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae BS397]
 gi|332077041|gb|EGI87503.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA17545]
          Length = 740

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|301793801|emb|CBW36193.1| putative phosphoesterase [Streptococcus pneumoniae INV104]
 gi|332204634|gb|EGJ18699.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA47901]
          Length = 740

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|238897399|ref|YP_002923076.1| ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465154|gb|ACQ66928.1| ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 578

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/562 (31%), Positives = 279/562 (49%), Gaps = 20/562 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           P ++ ++  +R ++ D     L    + L  D   L   + A + + +A    +++MI G
Sbjct: 22  PQLIRQLYASRGITKDQQ---LARGTKSLC-DWQALAGIEDAIQILKEAFSLQKRMMIVG 77

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+DVDGA S AL M  L      N +  IP+R  +GYG  P ++E+    GA LIITVD 
Sbjct: 78  DFDVDGATSTALAMMALEAMGAQNVHFLIPNRFEEGYGLTPKIVEQVSLRGADLIITVDN 137

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ +  A ++G+ V++ DHH        A A++NPN+L+       L   GV F +
Sbjct: 138 GISSHEGVDLAHHKGMQVLITDHHLPTERLPNADAIINPNQLNCPFPSKSLAGVGVTFYL 197

Query: 219 LVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           ++ +   LR++           +L   LDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 198 MLGLRAHLRKEGWFHKKNIQEPNLAEFLDLVALGTVADVVPLDTNNRILVHQGLNRIRAG 257

Query: 275 G-NPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG+ AL+E        +TA +LG+ + P +NA GR+   + G  LL++ D  E   L
Sbjct: 258 KSRPGIVALLEVASRSEHRLTAADLGFALAPRLNAAGRLDNMSTGVSLLLTQDLSEAREL 317

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A  LD LN+ RR +E +M ++A       +C D      + +   +WH G+VG+LA+R+K
Sbjct: 318 ARDLDALNKVRREIEQSMKKEALDLCHQIECHDQPLPKGLALYHPKWHQGVVGILASRIK 377

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           ++F RP  A +  + G+  GSGRS+    +  ++        G+++K GGHAMAAGL +E
Sbjct: 378 DRFYRPVIAFAPTDGGQLKGSGRSVTSVHMRDLLEQIDRAYPGLILKFGGHAMAAGLLIE 437

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           +  F      F +     +  L        DG L+   +++    +L  AGP+G G P P
Sbjct: 438 QNKFDLFRQCFAERVTASLKDLELENSIWSDGELSPDKISLETAQLLRDAGPWGQGFPEP 497

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           VF     ++   R++   HL++  E  +    L AIAF V        L     K++ + 
Sbjct: 498 VFDGK-FRILKQRLLCGCHLKLQVEPIEGGIPLDAIAFNVDSKSWPYPLF----KKVTLA 552

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L +N +R   + QL +    
Sbjct: 553 YKLDINVFRQQPQLQLMIQGIW 574


>gi|225856310|ref|YP_002737821.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae P1031]
 gi|307126810|ref|YP_003878841.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae 670-6B]
 gi|225725908|gb|ACO21760.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae P1031]
 gi|306483872|gb|ADM90741.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae 670-6B]
          Length = 744

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|15902581|ref|NP_358131.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae R6]
 gi|15458112|gb|AAK99341.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae R6]
          Length = 744

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|281491112|ref|YP_003353092.1| single-stranded-DNA-specific exonuclease RecJ [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374862|gb|ADA64381.1| Single-stranded-DNA-specific exonuclease RecJ [Lactococcus lactis
           subsp. lactis KF147]
          Length = 742

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/579 (29%), Positives = 269/579 (46%), Gaps = 34/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           + W            L I +KH + ++ +RVL  R V  +   + FL PS+  L  DP +
Sbjct: 6   YDWKVADT-AISEDFLKIAKKHKLDELTSRVLYQRGVHAEAEIEQFLKPSLENLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI+ AI   E I+I+GDYD DG  + ++M   L      A +Y+P+R  DG
Sbjct: 64  LHDMEKATGRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN  + + +I      LIITVD G    +A+ +A   G+DVIV DHH +  +  PAYA
Sbjct: 124 YGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPPAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F V   +                  +LDLVA+ T+ D+
Sbjct: 184 IVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAP-----------SEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V  +    GL+ L++   +    IT E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D  E   +A  +D  N  R+ +   +  +A + +  +        V +
Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDE-------PVQI 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A RL E   +P   ++ +E+G   GS RSIE FDI    +      
Sbjct: 346 LYHKDWHKGVLGIVAGRLLEAIHKPVIMLA-QEEGILRGSARSIENFDI--FKALNAHRE 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAG+T+   N   +      +  +    +      +I    +   ++++ 
Sbjct: 403 LFIAFGGHKQAAGMTLSLENVEVVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLST 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           I  L    P+G  NP P F   ++K+   R +     HL++  + ++ + + A+ F+   
Sbjct: 463 ITNLAKLAPFGMDNPKPRFLIEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L     Q++     +   L  N W G+   QL + DA
Sbjct: 522 EELEFEQAQTK-----LVATLSSNSWDGNTSLQLMIEDA 555


>gi|319897320|ref|YP_004135516.1| single-stranded-DNA-specific exonuclease recj [Haemophilus
           influenzae F3031]
 gi|317432825|emb|CBY81190.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae F3031]
          Length = 532

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/536 (31%), Positives = 269/536 (50%), Gaps = 16/536 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           M +P  L   D+A   +V+A    +KI+I GD+D DGA S AL +  L      + +  +
Sbjct: 1   MLNPNQLYGIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVDYLV 60

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R   GYG +  + E  I +G QL++TVD G +S+D + +   +GI V+V DHH     
Sbjct: 61  PNRFEQGYGLSIPVAEMAIEKGVQLLMTVDNGVSSFDGVVFLKEKGIRVLVTDHHLPPET 120

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245
             PA  +VNPN          L   GV F +++ +    R+          +   LLDLV
Sbjct: 121 LPPADVIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 180

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNPGLKALIERVNIS-SPITAENLGYMIGP 303
           AL TV DVVPL   NR    +GLM  R R+  PG+ AL E  N +    T+ +LG+ IGP
Sbjct: 181 ALGTVADVVPLDQNNRILAYQGLMRIRARRCRPGIIALAEVANRNVEQFTSSDLGFCIGP 240

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+   ++G  LL++++  +   LA+ LD LNQ R+ +ES M  +A         
Sbjct: 241 RLNAAGRLDNMSIGVELLLANEMPKARELALDLDELNQTRKEIESGMKLEAIKICQNLTA 300

Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++    I +    WH G++G++++R+K+++ RP  A + + +G   GS RSIEG  + 
Sbjct: 301 LFKELPYGITLYQPDWHQGVLGIVSSRVKDQYHRPVIAFTQDSEGILKGSARSIEGLHMR 360

Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
            ++         I++K GGHAMAAGL++    F      F +   + +       +   D
Sbjct: 361 DVLERIHSQHPNIILKFGGHAMAAGLSIREEYFADFQHLFNQTIADWLDEEHLQGIIWTD 420

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537
           G LN++  N+   ++++S G +G G P P F     K+   R +     HL+M  E  Q 
Sbjct: 421 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQG 479

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              L AIAF +      +  +    K+  +   L +N +RG++  QL V    P++
Sbjct: 480 GVLLDAIAFNIDTRLYPDLSI----KQARLVYKLDINEFRGNRSLQLLVDYIEPID 531


>gi|168482843|ref|ZP_02707795.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043762|gb|EDT51808.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CDC1873-00]
 gi|332203770|gb|EGJ17837.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA47368]
          Length = 740

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQILEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|329116391|ref|ZP_08245108.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parauberis NCFD 2020]
 gi|326906796|gb|EGE53710.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           parauberis NCFD 2020]
          Length = 735

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/591 (27%), Positives = 272/591 (46%), Gaps = 33/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W+    +        + +K ++   + R+L +R +  +     FL   +  L  DP +
Sbjct: 6   YDWIINEKKPDDG-FFKLAKKKSLSQDICRLLYDRGIDDEKKLDHFLRADLSDL-NDPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI  AI N E+I+++GDYD DG  S ++M   L      A +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRTAIENFEQILVYGDYDADGMTSASIMKETLEMMGAEALIYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA   G+DVIV DHH +  +   AYA
Sbjct: 124 YGPNESVYKYFIEQNQVSLIITVDNGVAGHEAIAYAQAAGVDVIVTDHHSLPDQLPQAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   +       L   GV F +   +   +               LDLVA+ T+ D+
Sbjct: 184 VIHPEHPEADYPFKKLAGCGVAFKLACALLETVP-----------TEFLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIG 312
           V L   NR  V  GL V +     GL+ L+    +      E+ +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRVLVKNGLKVLKMSERQGLQELMTISGVDLDAIDEDTVGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ ++  N+ R+ +   +  +A   V           V V
Sbjct: 293 DPNPAIELLTGFDDEEAHDIALMINEKNEERKSLVQTIYNEAVEMVDL------SKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WHPG++G++A R+ E+  +    ++  E+G   GS RSIE  +I    +   +  
Sbjct: 347 LAKAGWHPGVLGIVAGRILEEISQTVIVLN-IENGVAKGSARSIEAINI--FDALNHQRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++   GGH+ AAG+T+   N   L +    +  +    +      KID  L+   +++  
Sbjct: 404 LMTAFGGHSGAAGMTLPAENIQALSESITDYVVSEKIDISQKNSLKIDSWLDLDHLSLEF 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  L    P+G  N  PVFA  +  +   R +    +HL++  ++   ET   +AF    
Sbjct: 464 LKELNILAPFGMDNKKPVFALKDFTVVQARTMGADQSHLKLRIKNGSVET-DVVAFNQGQ 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
             L    +      + +   L VN W G+   QL ++DA   +    F  +
Sbjct: 523 YHLEYSQLAD----LELAVTLTVNSWNGNTSLQLMLVDARATKSPQLFDFR 569


>gi|262168396|ref|ZP_06036093.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           RC27]
 gi|262023288|gb|EEY41992.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae
           RC27]
          Length = 545

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/538 (31%), Positives = 264/538 (49%), Gaps = 21/538 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           +     L   D+A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +
Sbjct: 11  LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  DGYG +P ++++ I  GA++I+TVD G +S + ++YA  +G+ V+V DHH    E
Sbjct: 71  PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243
                A+VNPN          L   GV F +++ +   +RQ             L+ L+D
Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELID 190

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG++ALIE        + A + G+ +
Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359
           GP INA GR+ + + G  LL+ ++      +A +LD LNQ R+ +E  M     A  + L
Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
              DD +    +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G 
Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370

Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
            +   +        GI++K GGHAMAAGLT+E  NF   C  F +     +       + 
Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFEHFCRLFDQLVREELDEAALQGII 430

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535
             DG L     ++   ++L + GP+G   P P+F     K+   ++V   HL++  E   
Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489

Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  +  IAF V      +       K + +   L +N +RG++  QL +    
Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPDV----SVKTVRLAYKLDINEFRGNQSLQLMIDYLE 543


>gi|156932656|ref|YP_001436572.1| ssDNA exonuclease RecJ [Cronobacter sakazakii ATCC BAA-894]
 gi|156530910|gb|ABU75736.1| hypothetical protein ESA_00439 [Cronobacter sakazakii ATCC BAA-894]
          Length = 543

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/543 (32%), Positives = 270/543 (49%), Gaps = 17/543 (3%)

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L  S++ ++P    L   DKA   +  A+    +I++ GD+D DGA S AL +  L    
Sbjct: 7   LERSVKGMLP-WQQLCGIDKAVAMLHYALREGLRIIVVGDFDADGATSTALSVLALRALG 65

Query: 121 V-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179
             N    +P+R  DGYG +P ++++    GAQ+I+TVD G +S+  +  A   GI V+V 
Sbjct: 66  GSNVAYLVPNRFDDGYGLSPEVVDQAHARGAQMILTVDNGISSHAGVARAHELGIPVLVT 125

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LN 235
           DHH        A A++NPN  +       L   GV F +++ +   LR            
Sbjct: 126 DHHLPGDTLPAAGAIINPNLAECTFPSKSLAGVGVAFYLMLALRAHLRTVGWFTEKGIPE 185

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPIT 293
            +L   LDLV+L TV DVVPL   NR  + +GL   R  +  PG++AL+E  N     +T
Sbjct: 186 PNLAEFLDLVSLGTVADVVPLDANNRILIWQGLSRIRAGKCRPGIRALLEIANREAHRLT 245

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
           A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  MLA +LD LNQ R+ +E  M  +
Sbjct: 246 ASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARMLANELDALNQTRKEIEQGMQAE 305

Query: 354 AEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGS 412
           A           +   S I +    WH G+VG+LA+R+KE+F RP  A +   +G   GS
Sbjct: 306 ALTLCQQLERSGETLPSGIAIFHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGILKGS 365

Query: 413 GRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
           GRS++G  +   +        G+++K GGHAMAAGL++E   F      F +  ++ +  
Sbjct: 366 GRSVQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEARFPEFQARFAQLVNDWLDP 425

Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQ 530
            +       DG L    + + + +ML  AGP+G   P P+F     ++   R+V   HL+
Sbjct: 426 AMLQGEIWSDGALAPQEMTLEVAEMLRDAGPWGQMFPEPLFDGR-FRILQQRLVGERHLK 484

Query: 531 MTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +  E       L  IAF V  T   +       + + +   L VN +RG+   QL +   
Sbjct: 485 LMLEPVGGGPLLDGIAFNVDTTCWPD----PGVREVELAYKLDVNEFRGNCSLQLIIDHL 540

Query: 590 SPV 592
            PV
Sbjct: 541 WPV 543


>gi|148992282|ref|ZP_01822005.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP9-BS68]
 gi|147928908|gb|EDK79920.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP9-BS68]
 gi|332074417|gb|EGI84893.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA17570]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|183603118|ref|ZP_02712494.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP195]
 gi|237649854|ref|ZP_04524106.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CCRI 1974]
 gi|183573135|gb|EDT93663.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP195]
          Length = 744

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|148983991|ref|ZP_01817310.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924138|gb|EDK75250.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799657|emb|CBW32217.1| putative phosphoesterase [Streptococcus pneumoniae OXC141]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|88608252|ref|YP_506588.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600421|gb|ABD45889.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia
           sennetsu str. Miyayama]
          Length = 577

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/585 (35%), Positives = 311/585 (53%), Gaps = 21/585 (3%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
            SI G  W+           L + QK  +   VA VL NR  + D    FL+P ++  +P
Sbjct: 6   KSIKGSVWIHNYVPP--KELLFLRQKFGLSLTVASVLYNRVGADDDIATFLDPKLKHTLP 63

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP  L    +   RI++AI   EKI+I+GDYDVDGA S AL+  +        ++YIPDR
Sbjct: 64  DPFSLLGMKEGIERILRAISEDEKIVIYGDYDVDGATSSALLKNYFREIGKKVDIYIPDR 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           I +GYGPN     +   EG  L ITVDCG  ++  ++ A   G+D+IV+DHH       P
Sbjct: 124 ITEGYGPNKVAFTQLKKEGYTLCITVDCGILAHAEIEAANTIGLDIIVVDHHISTDVIPP 183

Query: 191 AYALVNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVA 246
           A A++NPNR+D  ++    HL A GV FL+L+ +  +LR           +L++ LDLVA
Sbjct: 184 ATAVINPNRIDQPNVINTEHLAAVGVSFLLLIGLNVVLRAKGFFDNKKEPNLINYLDLVA 243

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           L TVCDVV L G+NRA+V +GL V  ++ N GL  L + + + S + A +LGY+IGP IN
Sbjct: 244 LGTVCDVVRLTGINRAFVKQGLKVIDQRKNLGLSILTKELKLFSTLEAYHLGYVIGPHIN 303

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGRI +S+LGSRLL + +  E E +A  L VLN  R+ +E A L++   +V     +  
Sbjct: 304 AGGRISQSSLGSRLLSTQNPAEAEEIATTLCVLNLKRKEIERAALQEVITQV-----EKT 358

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
              VI+     WH GI+G++A+R+K+++  P+  +S  +      S RSI   +IG  V 
Sbjct: 359 SKKVILAASANWHQGIIGIVASRIKDRYHLPTIILS-IDGNIAKASARSIRDANIGMAVI 417

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
            A E G++++GGGH MAAG + E      + DFF+++  ++           ID  L   
Sbjct: 418 AAKESGLIIEGGGHKMAAGFSCETRKIPAIRDFFEEYFKDVNTQE----TIHIDSELYID 473

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFES-QDSETLQAI 544
            +   L D L+   P+GAGNP P F   + ++ + +++    H+  T    +    ++ I
Sbjct: 474 TITSDLCDDLKILAPHGAGNPEPKFVLKDVRVVTSKIIGEDGHIACTLRDVRTHTVIRGI 533

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AFR     L E ++            +  +    S + Q+ + DA
Sbjct: 534 AFRA-DPILKEAILNCEVTNF--LVKIKADSLGYSNKPQVIIEDA 575


>gi|298229719|ref|ZP_06963400.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255471|ref|ZP_06979057.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502403|ref|YP_003724343.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298237998|gb|ADI69129.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 744

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|237821283|ref|ZP_04597128.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 744

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++ +
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLEM 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|221231434|ref|YP_002510586.1| phosphoesterase [Streptococcus pneumoniae ATCC 700669]
 gi|220673894|emb|CAR68400.1| putative phosphoesterase [Streptococcus pneumoniae ATCC 700669]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|148998284|ref|ZP_01825753.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP11-BS70]
 gi|168576490|ref|ZP_02722364.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae MLV-016]
 gi|147755927|gb|EDK62971.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP11-BS70]
 gi|183577772|gb|EDT98300.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae MLV-016]
 gi|332202488|gb|EGJ16557.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae GA41317]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A  +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIAFMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|307067227|ref|YP_003876193.1| single-stranded DNA-specific exonuclease [Streptococcus pneumoniae
           AP200]
 gi|306408764|gb|ADM84191.1| Single-stranded DNA-specific exonuclease [Streptococcus pneumoniae
           AP200]
          Length = 744

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A  +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIAFMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|225858446|ref|YP_002739956.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae 70585]
 gi|225721186|gb|ACO17040.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae 70585]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I  + +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIGANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|239628278|ref|ZP_04671309.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518424|gb|EEQ58290.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 590

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/601 (27%), Positives = 273/601 (45%), Gaps = 49/601 (8%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAA 82
                    I + + I  + AR++ NR +   +    +L+ S++ L  DP +L D +KA 
Sbjct: 3   HAKKADFNKIAETYGISPVTARIIRNRGIEGMEDIGHYLHGSVKDLH-DPRLLPDMEKAV 61

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
             +   +   + I I GDYD+DG  S  L+ R L     N +  IPDRI DGYG N  ++
Sbjct: 62  GILRGKVQEGKPIRIVGDYDIDGVCSTYLLYRALKRIGANVDFEIPDRIKDGYGINEMII 121

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-------------------- 182
           E    +G   I+T D G  +   +  A   G+ V+V DHH                    
Sbjct: 122 EAAAEDGIDTILTCDNGIAAVSQIARAKELGMTVVVTDHHDILVEESGNSGAGDDAGGQD 181

Query: 183 ----------QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
                     Q      PA A+VNP           +C   V + ++ +++         
Sbjct: 182 GNDADAEDSCQGTEVLPPADAIVNPKMRGCRYPFPGICGGMVAYKLVQVLFEECGV---- 237

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
               + L +L++ A+ATV DV+ L G NR  V +GL       N GL+ LIE+ N  S  
Sbjct: 238 -PAEEWLDMLEIAAIATVGDVMKLQGENRIIVKEGLCRLGHTSNLGLRKLIEKNNLASDS 296

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           ITA ++G++IGP +NA GR+  + L   LL+ +D  E + +A +L  LN  R+ M  A +
Sbjct: 297 ITAYHIGFVIGPCLNASGRLQTAKLALGLLLCEDEMEADRMAQELKELNDQRKDMTQAGI 356

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
           + A A V       Q   V+VV     H  + G++A RL+E++G+PSF ++  E G   G
Sbjct: 357 DDAAAMVDEL---YQDDKVLVVFLPDCHESLAGIVAGRLRERYGKPSFVLTRAE-GCAKG 412

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           SGRSIE + +    +    + +L+K GGH MAAG ++   +         + A   +   
Sbjct: 413 SGRSIEAYHM--FHALVEVKDLLLKFGGHPMAAGFSLREEDVDEFRRRLNENARERLTED 470

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--L 529
              P   ID  +    ++ + +  LE   PYG GN  P FA  N  ++S  V+      +
Sbjct: 471 DFIPRVWIDVAMPFEYISESFVKELELLEPYGQGNEKPQFAQKNMVIRSASVMGRNRNVV 530

Query: 530 QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +++  ++   ++  + F      + E   +   + M +  +  VN + G++  Q+ V D 
Sbjct: 531 RLSLVNERGVSMNGVVFTEGDLFMEE---KGNSRVMDIIYYPGVNEYNGNRNLQIVVKDW 587

Query: 590 S 590
            
Sbjct: 588 K 588


>gi|169343769|ref|ZP_02864768.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens C str. JGS1495]
 gi|169298329|gb|EDS80419.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           perfringens C str. JGS1495]
          Length = 592

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/603 (29%), Positives = 301/603 (49%), Gaps = 44/603 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + ++  I  + + +LVNRN+  +  A++FL   I  L  DP ++
Sbjct: 4   QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K  +R+ +AI   +KI I+GDYD DG +S +++ + L  C+ N N +IPDR  +GY
Sbjct: 61  KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N   ++    EG ++I+T D G  +++ +  A N G+DVI+ DHH +           
Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E   AYA++NP + D       LC AG+ F  +  +Y+ L          + L LL++ 
Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV L+G NR  V  GL +     N GL AL +   +    +   +LG++IGP 
Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LL+++D ++ + LA +L  LNQ R+ +    ++    ++  + ++
Sbjct: 296 INATGRLETADLSVELLLAEDDEKADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   VI+V     H  I G++A R+KEK+  P+  ++ +      GS RSIE ++I + 
Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +S   E  ++ K GGH MAAGL+VE  N   L     +     +      P  +ID  L 
Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRSMLLENCK--LTDYDIIPKVRIDVKLP 468

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541
             ++N  L+D L+   P+G GN +P+F   + K+  + ++      ++   + ++S +T+
Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
            AIAF        E      G+               + +  +  +N + G K  Q  V 
Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGDKSIQANVK 588

Query: 588 DAS 590
              
Sbjct: 589 YFR 591


>gi|301801480|emb|CBW34172.1| putative phosphoesterase [Streptococcus pneumoniae INV200]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|182683542|ref|YP_001835289.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CGSP14]
 gi|182628876|gb|ACB89824.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CGSP14]
          Length = 744

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|168490503|ref|ZP_02714646.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CDC0288-04]
 gi|194398716|ref|YP_002037270.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae G54]
 gi|183575023|gb|EDT95551.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CDC0288-04]
 gi|194358383|gb|ACF56831.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae G54]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|118090027|ref|NP_345123.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae TIGR4]
 gi|85720558|gb|AAK74763.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae TIGR4]
          Length = 740

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|111657547|ref|ZP_01408287.1| hypothetical protein SpneT_02001248 [Streptococcus pneumoniae
           TIGR4]
          Length = 744

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R + + +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572


>gi|71908451|ref|YP_286038.1| RecJ exonuclease [Dechloromonas aromatica RCB]
 gi|71848072|gb|AAZ47568.1| exonuclease RecJ [Dechloromonas aromatica RCB]
          Length = 566

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 178/566 (31%), Positives = 269/566 (47%), Gaps = 27/566 (4%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           ++  +  ++AR+   R +     K  L+  ++ L+P P  LT    AA+ +  AI    K
Sbjct: 18  EQQGLHPLLARLYAARGIKD---KSELDYELKSLIP-PTALTHATDAAQLLADAIEAEAK 73

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           ++I GDYD DGA + A+ MR L     + +  +PDR   GYG +P +++    +   LII
Sbjct: 74  MLIIGDYDCDGATATAVGMRALKSLGADVDFLLPDRFKLGYGLSPEIVDVAAEQSPDLII 133

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  S + +  A   GI  ++ DHH   +    A  +VNPN+         +   GV
Sbjct: 134 TVDNGIASLEGVARAQQHGIATLITDHHLPAATLPAADCIVNPNQPGCDFPSKCIAGVGV 193

Query: 215 VFLVLVLIYRILRQDNKVPLN------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           +F V++ +   LR+      N       +  +LLDLVAL TV DVV L   NR  V +GL
Sbjct: 194 MFYVMLALRAELRERGWFTPNGGDRPEPNFANLLDLVALGTVADVVKLDRNNRILVSQGL 253

Query: 269 MVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R        A             TA +LG+++GP +NA GR+ +  LG   L++DD 
Sbjct: 254 KRMRAGQMQPGIAALFKAAARDPKRATAFDLGFLLGPRLNAAGRLADMRLGVECLLTDDP 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
                +A +LD LN+ RR +E+ M EQA   + +       A  I +    WH G+VG+L
Sbjct: 314 SRALQIAQELDSLNRERREIEAGMQEQALILLESLDVA-NAAPGIALFDAGWHEGVVGIL 372

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A+R+K+K  RP FA +  E G   GSGRSI G  +   +        G+LV+ GGHAMAA
Sbjct: 373 ASRIKDKLHRPVFAFARGEGGIVKGSGRSIPGLHLRDALDLVAKRAPGLLVRFGGHAMAA 432

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           G T++  +F R    F + A  ++     T   + DG L    +++    MLE+   +G 
Sbjct: 433 GATLKEEDFERFSQLFAEVAAELLAPADLTRTLETDGNLEGGYISLETARMLEN-EIWGQ 491

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
           G P P+F   +  ++  RV+   HL++     D   + AI F     P         G R
Sbjct: 492 GFPAPLFM-DDFDVEQQRVLKEKHLKLRLRKGD-TRIDAIQFNFSNQP---------GSR 540

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590
             V   L +N + G +  QL V    
Sbjct: 541 TRVAYRLAINEYMGVESPQLMVEHLE 566


>gi|298372091|ref|ZP_06982081.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274995|gb|EFI16546.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 582

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/591 (27%), Positives = 271/591 (45%), Gaps = 24/591 (4%)

Query: 11  CSISGFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
            S+    W       E  +    ++    I   ++++LV RNV + D AK F  PS+  L
Sbjct: 2   KSV----WNIRQIGNEEHSAINHLSAVLGISAELSKLLVIRNVKTFDEAKAFFRPSLDNL 57

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DP ++ D   A  R+ +A+   EKI+++GDYDVDG  +V+L+  FL   + N   YIP
Sbjct: 58  H-DPFLMRDMSTAVERVNKALREQEKILVYGDYDVDGTTAVSLVYGFLKQYTKNIRYYIP 116

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           DR  +GYG +   +E   + G  L+I +DCG  S D +  A   GID I+ DHH    + 
Sbjct: 117 DRYTEGYGISFKGIEFAKDNGFSLVIALDCGIKSNDKIDLANRYGIDFIICDHHTPGVDL 176

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             A A+++P+R D      HL   GV F ++  +      D            LDL A++
Sbjct: 177 PKAVAVLDPHRADCEYPYEHLSGCGVGFKLVQALCMSNMLDIDEAFR-----YLDLAAVS 231

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINA 307
              D+VP+ G NR     GL       + GLK++ +        +   ++ + IGP INA
Sbjct: 232 IASDIVPITGENRVLASFGLKKLNFNPSAGLKSIKDVCGLNKKTVDISDIVFKIGPRINA 291

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+       +LL S + + L+     +D  N  R+ ++ +  E+A+ +   +  D ++
Sbjct: 292 SGRLHSGAEAVQLLTSTNDEVLQQKCADIDGYNSERKDIDKSTTEEAKRQ-FAEQPDYKE 350

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
              IV+    W+ GIVG++A+R+ E+F RP+  ++  +DG   GSGRS+ GFD+   +  
Sbjct: 351 KKSIVLYNPSWNKGIVGIVASRIAEEFCRPTIILTDSDDGLVAGSGRSVVGFDLYSAIDS 410

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             E  +LV  GGH  AAGLT+ R         F  F    +      P   ID  ++ ++
Sbjct: 411 CAE--LLVNFGGHPYAAGLTLRREQLTDFAIRFDNFVCRNILPEQLIPQIDIDTEIDFTS 468

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKL--QSIRVVNLA--HLQMTFESQDSETLQA 543
           +    I +L+   P+G  N  PVF            R++     H ++            
Sbjct: 469 ITPKFIRILKQFAPFGPHNMKPVFCTHGLSDFHNQSRLIGKDNTHAKLVLTQNGHTFFDG 528

Query: 544 IAF---RVYGTPLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +AF    +    +   +   + K ++ +   +  N + GS   QL + D  
Sbjct: 529 VAFCSGYMRNYNMANIIDHIKNKGQIDICYTIEDNNFNGSITNQLMIRDIR 579


>gi|262166459|ref|ZP_06034196.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           VM223]
 gi|262026175|gb|EEY44843.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus
           VM223]
          Length = 548

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/538 (31%), Positives = 264/538 (49%), Gaps = 21/538 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYI 127
           +     L   ++A   +  AI   ++I++ GD+D DGA S AL +  L      N +  +
Sbjct: 14  LHSFKQLHGIERAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLV 73

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  DGYG +P ++++ +  GA++I+TVD G +S + ++YA  +G+ V+V DHH    E
Sbjct: 74  PNRFEDGYGLSPEVVDQALERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQE 133

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
                A+VNPN          L   GV F +++ +   +RQ             L+ L+D
Sbjct: 134 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFVAQGIAEPKLMELID 193

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG++ALIE        + A + G+ +
Sbjct: 194 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 253

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES--AMLEQAEAKVL 359
           GP INA GR+ + + G  LL+ ++      +A +LD LNQ R+ +E        A  + L
Sbjct: 254 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 313

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
              DD +    +V+    WH G++G+LA+R+KEK+ RP  A +   DGK  GS RS+ G 
Sbjct: 314 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 373

Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
            +   +        GI++K GGHAMAAGLT+E  NF R C  F       +       + 
Sbjct: 374 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDNLVREELDEAALKGII 433

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535
             DG L     ++   ++L + GP+G   P P+F     K+   ++V   HL++  E   
Sbjct: 434 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 492

Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +  +  IAF V      +    +  K + +   L +N +RGS+  QL +    
Sbjct: 493 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGSQSLQLMIDHIE 546


>gi|119946908|ref|YP_944588.1| single-stranded-DNA-specific exonuclease RecJ [Psychromonas
           ingrahamii 37]
 gi|119865512|gb|ABM04989.1| exonuclease RecJ [Psychromonas ingrahamii 37]
          Length = 572

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 180/557 (32%), Positives = 291/557 (52%), Gaps = 18/557 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              ++ ++ +NR +S       L+ S + L+     L     A   + QA+ +S+KI++ 
Sbjct: 21  CSPLLTQLYINRGISSA---SELDNSTQSLLHA-QQLKGITTACELLYQALLSSQKIIVV 76

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  IP+R   GYG +P +++  I++GAQL++TVD
Sbjct: 77  GDFDADGATSTALSILALRGLGFTNIDYLIPNRFDYGYGLSPEIVDLAISKGAQLLMTVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S    ++A + G+ +++ DHH   +E   A A+VNPN++       +L   GV F 
Sbjct: 137 NGISSISGAKHAKDNGLKLLITDHHLPGAETPQADAIVNPNQVGCSFPSKNLAGVGVAFY 196

Query: 218 VLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ- 274
           V++ +   ++           +L +LLD+VAL TV DVV L   NR  V +GL   R   
Sbjct: 197 VMLALRAFMQNKGYFTHFKAPNLATLLDIVALGTVADVVVLDANNRTLVHQGLARIRAGV 256

Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
              G+ ALI     +   + A +LG+ +GP +NA GR+ E + G  LL+ ++ ++  ++A
Sbjct: 257 CRVGISALISVAKRNQGQLVASDLGFSLGPRLNAAGRLDEMSFGVELLLCENVEQANIIA 316

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKE 392
            +LD LNQ+RR +E  M E+A   +     D       I +    WH G++GL+A+R+KE
Sbjct: 317 NELDALNQSRREIEQGMQEEALKTLANLSLDENNIPHAICLFEQEWHQGVIGLVASRIKE 376

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVER 450
           K+ RP+FA +   +G+   S RSI G  I  M+    +   G+++K GGHAMAAGL+V+ 
Sbjct: 377 KYYRPTFAFAKANNGEIKASARSIPGVHIRDMLDLVDKKIPGVILKFGGHAMAAGLSVKE 436

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F        +     V   +   +   DG LN+   ++     L  AGP+G G P P+
Sbjct: 437 TDFELFSKTINRVLQEQVDNDLLNNIILCDGQLNSQQFSLEQAQELRDAGPWGQGFPAPL 496

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     KL   R+V   HL+MT E +  +T++AIAF +      EF      K ++    
Sbjct: 497 FDGE-FKLLQQRLVGSHHLKMTLEFE-GKTIEAIAFNID----VEFWPNPMVKTVYCVYR 550

Query: 571 LCVNYWRGSKRCQLRVL 587
           L +N +RG++  Q+ V 
Sbjct: 551 LDINEFRGNRTVQMLVE 567


>gi|169833143|ref|YP_001694090.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168995645|gb|ACA36257.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 740

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SRGEASFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568


>gi|156743853|ref|YP_001433982.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus
           castenholzii DSM 13941]
 gi|156235181|gb|ABU59964.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus
           castenholzii DSM 13941]
          Length = 572

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/583 (29%), Positives = 282/583 (48%), Gaps = 24/583 (4%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           S    RW+     E     +A  ++   P ++A VL  R +  + A      S   L  D
Sbjct: 7   SARNKRWLI---HETPREFIAAWRQF--PPLIAAVLYQRGLRDESAIGEFFASDYRLH-D 60

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L   + A +RIV AI N E + ++GDYD DG  +V L+++ +         Y+P RI
Sbjct: 61  PFSLRGMEAAVQRIVAAIQNHEPMAVYGDYDTDGVTAVTLLVQVIRAMGGMIQPYVPHRI 120

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N + ++  + EG +L+ITVDCG ++    ++A   G+D+I+ DHH   +    A
Sbjct: 121 REGYGLNIAAIDALVREGVRLLITVDCGISNLREAEHARAAGLDLIITDHHAPPARLPYA 180

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VNP +        HL   G+ + +   + R       +        LLD+VA+ TV 
Sbjct: 181 LAIVNPKQPGCPYPFKHLVGVGIAYQLARALVRR-----GLRSTLQKDDLLDVVAIGTVT 235

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+ PLIG NR  V  GL        PG++ALIE   ++   +T+ ++ + +GP +NA GR
Sbjct: 236 DMGPLIGENRVLVTHGLKAINAAQRPGVRALIEAAGLTPGKVTSTDISFGLGPRLNASGR 295

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I  + L   LL++++    + LA +L+  N+ R+ +  ++ EQA A++       Q+  +
Sbjct: 296 IDNARLSYELLLAEELAMAQRLARELNAQNRQRQELSKSVQEQASAQIRALGKHQQR--I 353

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           IV++   +  G+VGL+AA L E++GRP+  I   E     GS RS+ GF I + ++    
Sbjct: 354 IVLDDAGYPSGVVGLVAAHLVEEYGRPTVLIERGEM-WSRGSARSVPGFSIIEALTAC-- 410

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +  + GGHA AAG T+       L D   ++A   +P  +  P  +ID  +    ++ 
Sbjct: 411 ADLFERFGGHAEAAGFTIATDRLPELEDRLVRYADQRLPDDLLIPSLRIDAGVPLGELSY 470

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547
            L++ L+   P+G GNP PV      ++           HL++            AIAFR
Sbjct: 471 DLLNELKKLEPFGQGNPQPVLMSSRVQVIGAWTRGSEGQHLKLRLTDAGGRGPFNAIAFR 530

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +    L  +  Q   + + V   L V+ W GS   QL V D  
Sbjct: 531 LG--HLARYFEQ--PRWIDVVYTLEVDEWNGSDALQLNVKDFR 569


>gi|322412009|gb|EFY02917.1| single-stranded-DNA-specific exonuclease [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 735

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIEDKKPDDG-FFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI QAI + E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMEKAVLRIRQAIEDGEQILIYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A+ YA  QGIDVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAISYAQVQGIDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLTMLKHTERVGLQELMSLSPIDLDQFTEDAVGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +   N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDNPNPAIELLTGFDDQEAQAIALMIKEKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    + +  
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLA-IDNGFAKGSARSLEAINI--FEALSGN 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L D   +F               ID  L+   +++
Sbjct: 402 RDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIEHGLDQTAKNTLTIDERLSLEDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  L+   PYG  +P P+F   + K+   R +     HL+    SQ   +   +AF  
Sbjct: 462 DTLKSLDKLAPYGMDHPKPIFYVKDIKVSQARTMGQDQSHLKFKV-SQGKTSFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L +F   +    + +   L VN+W G+   QL ++DA  
Sbjct: 521 -GSQLQDFQQATG---LELAVTLSVNHWNGNTSLQLMLVDARV 559


>gi|313200455|ref|YP_004039113.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp.
           MP688]
 gi|312439771|gb|ADQ83877.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp.
           MP688]
          Length = 569

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 269/564 (47%), Gaps = 24/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++A++L  R V        L  S+  L+P P  LT+  + A  +  AI     +++
Sbjct: 22  GLSPLLAQLLAARGVKTP---VQLEASLAGLIP-PDRLTNNTRMAALLADAIVAKRSLLV 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
            GDYD DGA + A+M+R L       +  +P+R   GYG  P ++E         IITVD
Sbjct: 78  VGDYDADGATATAVMVRGLRMLGAVVDFLVPNRFEYGYGLTPEIVELAAQSKPDFIITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S D +  A   G+ V+V DHH        A  +VNPN+        HL   GV F 
Sbjct: 138 NGIASVDGVARANALGMSVLVTDHHLPGDHVPAAACIVNPNQHGCDFPSKHLAGVGVAFY 197

Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
           V++ +   +R           +L SLLDLVAL TV D+V L   NR  V +GL   R  Q
Sbjct: 198 VMLALRAEMRARGLFEGKAEPNLTSLLDLVALGTVADLVKLDDNNRILVEQGLRRIRAGQ 257

Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
            +PG+  L+           A++LG+ +GP +NA GR+ +  LG   L+++D Q    +A
Sbjct: 258 CSPGILWLMRLAGREPASSCAQDLGFSVGPRLNAAGRLDDMTLGISCLLAEDDQSAHAMA 317

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +L  LN  RR +E+ M E A A++     D +    + +    WH G++G+LA+R+KE+
Sbjct: 318 QQLHALNHERRSIEADMQESALAEL--DGLDAEGRYSLSLYQPDWHQGVIGILASRIKER 375

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
           + RP  A +   DG   GSGRSI G  +   +      E  +++K GGHAMAAGL++  +
Sbjct: 376 YHRPVIAFAQAGDGVLKGSGRSIPGLHLRDALDLLSKREPDLILKFGGHAMAAGLSIREI 435

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +  R    F+     ++       + ++DG L    ++  +   L+    +G G P P+F
Sbjct: 436 DMERFRLGFESVVAGLLTPADLESIIEVDGALTLEDMHWDVAVALQR-QVWGQGFPPPMF 494

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
              + ++ + R+V   HL++T  ++    + AI FR           +   + +     L
Sbjct: 495 C-DDFEVVAQRIVGGKHLKLTLSTR-GRAVDAIFFRQ---------EEFLPQYVTAVYEL 543

Query: 572 CVNYWRGSKRCQLRVLDASPVEGH 595
             N + G++  QL +    PV   
Sbjct: 544 QTNAFNGARNVQLLIKHWQPVAAQ 567


>gi|319776544|ref|YP_004139032.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae F3047]
 gi|317451135|emb|CBY87368.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae F3047]
          Length = 532

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/536 (31%), Positives = 270/536 (50%), Gaps = 16/536 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           M +P  L   D+A   +V+A    +KI+I GD+D DGA S AL +  L      + +  +
Sbjct: 1   MLNPNQLYGIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVDYLV 60

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R   GYG +  + E  I +G QL++TVD G +S++ + +   +GI V+V DHH     
Sbjct: 61  PNRFEQGYGLSIPVAEMAIEKGVQLLMTVDNGVSSFEGIAFLKEKGIRVLVTDHHLPPET 120

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245
             PA A+VNPN          L   GV F +++ +    R+          +   LLDLV
Sbjct: 121 LPPADAIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 180

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGP 303
           AL TV DVVPL   NR    +GLM  R +   PG+ AL E  N +    T+ +LG+ IGP
Sbjct: 181 ALGTVADVVPLDQNNRILAYQGLMRIRARHCRPGIIALAEVANRNVEQFTSSDLGFCIGP 240

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+   ++G  LL++++  +   LA+ LD LNQ R+ +E+ M  +A         
Sbjct: 241 RLNAAGRLDNMSIGVELLLANEMSKARELALDLDELNQTRKEIEAGMKLEAIKICQNLTA 300

Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++    I +    WH G++G++++R+K+++ RP  A + + +G   GS RSIEG  + 
Sbjct: 301 LFKELPYGITLYQPDWHQGVLGIVSSRVKDQYHRPVIAFTQDSEGILKGSARSIEGLHMR 360

Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
            ++         I++K GGHAMAAGL++    F      F +   + +       +   D
Sbjct: 361 DVLERIHSQHPNIILKFGGHAMAAGLSIREEYFADFQHLFNQTIADWLDEEHLQGIIWTD 420

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537
           G LN++  N+   ++++S G +G G P P F     K+   R +     HL+M  E  QD
Sbjct: 421 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQD 479

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              L AIAF +      +  +    K+  +   L +N +RG++  QL V    P++
Sbjct: 480 GGLLDAIAFNIDTRLYPDLSI----KQARLAYKLEINEFRGNRSLQLLVDYIEPID 531


>gi|319425291|gb|ADV53365.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           putrefaciens 200]
          Length = 574

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ ++   R V     +  L   +R     P  +    +AA  I  A+  ++ I+I
Sbjct: 19  HLPPLLKQLYARRGVMPHECELALQGLLR-----PETMKGLIEAAAIIADAMQANKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++    ++ A+L+ITV
Sbjct: 74  VGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ VI+ DHH    E   A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADAIVNPNQPGCPFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LR  N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E  M ++A   +   + ++ +    I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+K+ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL+
Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +F      +       +   + T     DG L  + +N+ +  +L +AGP+G    
Sbjct: 434 LKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELTPTELNLEIAQLLRNAGPWGQAFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E+Q     L AIAF V      +  +        
Sbjct: 494 EPLFDGY-FKIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATINHA----R 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L VN +RG+   QL V    
Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572


>gi|90020860|ref|YP_526687.1| exonuclease RecJ [Saccharophagus degradans 2-40]
 gi|89950460|gb|ABD80475.1| exonuclease RecJ [Saccharophagus degradans 2-40]
          Length = 581

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/562 (30%), Positives = 275/562 (48%), Gaps = 21/562 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           D++ ++   R  S D    +   ++  ++P P  +    + A  I  A+   E+I+I GD
Sbjct: 26  DLIKQLYAARGYSSDKPTQY---ALSEMLP-PTNMRGIAEGANIIEAALRTGERIVILGD 81

Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +R L        +  +P+R   GYG  P ++         LIITVD G
Sbjct: 82  FDADGATSTALAVRCLRAMGAQHVDYLVPNRFEFGYGLTPEIVAVAAKLNPNLIITVDNG 141

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
             S + +  A   GI V+V DHH    +   A A+VNPN+     G  +L   GV+F +L
Sbjct: 142 IASVEGVNAANALGIKVLVTDHHLPPEQLPDAAAIVNPNQKGCEFGSKNLAGVGVIFYLL 201

Query: 220 VLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
             +   LR             ++ S LDLVAL TV DVVPL   NR  V +G+   R+  
Sbjct: 202 CALRSQLRASGWFEQRGIEPPNMASYLDLVALGTVADVVPLDFNNRILVSQGIARMRQGV 261

Query: 276 NPGLKA-LIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
                  L +    +   + + +LG+++GP +NA GR+ + +LG ++L++D+  E   LA
Sbjct: 262 CIAGIRALFQVGGRNIERVQSTDLGFVVGPRLNAAGRLDDMSLGIKMLLTDNYTEALHLA 321

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKE 392
            +LD LN+ RR +E++M  +A   +     D +Q  + + +    WH G++G+LA+R+K+
Sbjct: 322 GELDSLNRERRQIEASMQHEAFKLLDELALDGEQTPMGVSLYQADWHQGVIGILASRIKD 381

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           K  RP+ A +   D +  GSGRS+EG  +  ++        G+L K GGHAMAAGL++ +
Sbjct: 382 KLHRPTIAFADATDTEIKGSGRSVEGVHLRDILDQVATENPGLLSKFGGHAMAAGLSLPK 441

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F    + F +     +     T     DG L A  +++A  + +  AGP+G   P P+
Sbjct: 442 ESFTAFAEAFDRCVSAHLGGEALTAKVITDGELPAHLMDLATAEAIAHAGPWGQNFPEPL 501

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ--DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      L   R+V   HL+M           + AIAF V           +  +R+ + 
Sbjct: 502 FYGE-FLLVQQRIVGEKHLKMVVTPSEYSGLAIDAIAFNVDVASWP----NNSVERVRLA 556

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L VN +RG+K  QLRV    
Sbjct: 557 YVLDVNEFRGNKSLQLRVAHLE 578


>gi|148656139|ref|YP_001276344.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus sp.
           RS-1]
 gi|148568249|gb|ABQ90394.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus sp.
           RS-1]
          Length = 572

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/584 (29%), Positives = 280/584 (47%), Gaps = 26/584 (4%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMP 70
           S    RW  L        A       A+P ++A +L  R V  D A ++F +   R  + 
Sbjct: 7   SARNKRWHILETPPEFIAACR-----ALPPLIAALLYQRGVRSDAAMREFFSADYR--LN 59

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP  +   + A +RI  AI++ E + ++GDYD DG  +V L+++ +S        Y+P R
Sbjct: 60  DPFSMRGMETAVQRIAAAIHDHELMAVYGDYDTDGVTAVTLLVQAISAMGGLILPYVPHR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           I +GYG N   ++    EG +L+ITVDCG ++     +A   GID+I+ DHH   +    
Sbjct: 120 IREGYGLNIEAIDALAREGVRLLITVDCGISNVREAAHARAVGIDLIITDHHHPPARLPD 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP +        HL   G+ F ++  + R                LLD+VAL TV
Sbjct: 180 AVAIINPRQPGCSYPFKHLVGVGIAFQLVRALARR-----GFRSTLQKDDLLDVVALGTV 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309
            D+ PLIG NR  V  GL        PG++ALI+   ++   +T+ ++ + +GP +NA G
Sbjct: 235 TDMGPLIGENRVLVTHGLKALNAAQRPGVRALIQAAGMTPGRVTSTDISFGLGPRLNASG 294

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           RI  + L   LL++++ +  + LA +L++ N+ R+ +   + EQA A++  Q    Q   
Sbjct: 295 RIDNARLSYELLLAEEFETAQRLAHELNLQNRQRQELSKTVHEQASAQI--QALGKQNQR 352

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +I+++G  +  G+VGL+AARL E++GRP+  I   E     GS RS+ GF I   ++   
Sbjct: 353 LIILDGTDYPAGVVGLVAARLVEEYGRPTVLIERGEQ-WSRGSARSVPGFSIIDALTDC- 410

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +  + GGH  AAG T+       L D   ++A   +   +  P   ID  +  ++++
Sbjct: 411 -ADLFERFGGHTEAAGFTIATDRLPALEDRLLRYAAEHLSDDLLMPGITIDAEVPPASLS 469

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAF 546
             L+  L    P+G GNP PV      ++           HL++     D      AIAF
Sbjct: 470 YELLGELAKLEPFGHGNPQPVLMSRRLQVTGAWPRGSEGQHLKLRLVGADGSGPFDAIAF 529

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           R     L  +  Q   + + +   L  + W GS   QL V D  
Sbjct: 530 RFG--HLARYFEQ--PRWIDIVYTLEADEWNGSPSLQLNVKDFR 569


>gi|309792234|ref|ZP_07686706.1| single-stranded-DNA-specific exonuclease RecJ [Oscillochloris
           trichoides DG6]
 gi|308225775|gb|EFO79531.1| single-stranded-DNA-specific exonuclease RecJ [Oscillochloris
           trichoides DG6]
          Length = 571

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/583 (28%), Positives = 269/583 (46%), Gaps = 22/583 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMP 70
           S     W  L             ++     ++A +L  R +      + FL    R  + 
Sbjct: 4   SARHKHWDVLPAAPAD-----FIRRIGYSPLLATLLYQRQLREPELVQQFLRADYRSGLH 58

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P++L     A+ RI QAI   E I ++GD+D DG  +V L+++ L         YIP R
Sbjct: 59  NPMLLKGMPAASERIAQAIQAGEPIAVYGDFDTDGVTAVTLLVQALGAMGAKIQPYIPHR 118

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             +GYG N   ++     G +L+ITVDCG +++D +  A   G+DVIV DHH   SE  P
Sbjct: 119 TREGYGLNLHAVQHLAANGVRLLITVDCGISNHDEVAEAMRLGMDVIVTDHHTPPSELPP 178

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           AYA+VNP +        HL   GV F ++  + +       +        LLD+VAL TV
Sbjct: 179 AYAIVNPKQPGCTYPYPHLVGVGVAFKLVQALVKRGLSLGDLRG----RDLLDVVALGTV 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309
            D+ PL G NR  V  GL        PGL+AL+E   +S   + +  +GYM+ P INA G
Sbjct: 235 ADMGPLDGENRVLVKAGLEALNATQRPGLRALVEVSGLSMGKVDSAAIGYMLAPRINAAG 294

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++     LL++    + ++LA +L+  N+ R+ +   +   A+A    +    Q   
Sbjct: 295 RLDDAVRAYELLLATSYSQAKVLANELNQTNRARQDLTKQVQAAAKALAEAEGRHQQL-- 352

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+V+    +  G+VGL+A +L E++GRP   I   E     GS RSI GF I   +    
Sbjct: 353 VVVLHSPEFDAGVVGLVAGKLAEEWGRPVLLIEQGEAS-SRGSARSIPGFSIIAALQACH 411

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +  + GGH+ AAG T+   +   L    Q  A   +   +  P  ++D  +  + ++
Sbjct: 412 --DLFERYGGHSAAAGFTIPNEHIPTLDARLQALAAAQLSDTMLQPRIQVDAEVGLNELS 469

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
             L+  L    P+G  NP P+    + ++  +R       HL +          +AIAFR
Sbjct: 470 WELLADLAQLEPFGQANPQPILMSRSVQVVEVRSRGADGQHLSLIMRKDGGPRYEAIAFR 529

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +    L + L +    R+ +   L  N W G ++ Q+ + D  
Sbjct: 530 LG--HLADALRRHP--RIDLIYTLEANEWNGERKLQINIKDFR 568


>gi|251782685|ref|YP_002996988.1| single-stranded-DNA-specific exonuclease [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391315|dbj|BAH81774.1| single-stranded-DNA-specific exonuclease [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 735

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/583 (29%), Positives = 276/583 (47%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIEDKKPDDG-FFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI QAI + E+I+++GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMEKAVLRIRQAIEDGEQILVYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++AL YA  QGIDVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEALSYAQTQGIDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+   +I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLTMLKHTERVGLQELMSLSSIDLDQFTEDAVGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKEKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    + +  
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLA-IDNGFAKGSARSLEAINI--FEALSGN 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L D   +F               ID  L+   +++
Sbjct: 402 RDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLEDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  L+   PYG  +P P+F   + K+   R +     HL+    SQ   +   +AF  
Sbjct: 462 DTLKSLDKLAPYGMDHPKPIFYVKDIKVSQARTMGQDQSHLKFKV-SQGKTSFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L +F   +    + +   L VN+W G+   QL ++DA  
Sbjct: 521 -GSQLQDFQQATG---LELAVTLSVNHWNGNTSLQLMLVDARV 559


>gi|229829303|ref|ZP_04455372.1| hypothetical protein GCWU000342_01390 [Shuttleworthia satelles DSM
           14600]
 gi|229792466|gb|EEP28580.1| hypothetical protein GCWU000342_01390 [Shuttleworthia satelles DSM
           14600]
          Length = 590

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/601 (29%), Positives = 295/601 (49%), Gaps = 42/601 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +       A+ + + I  + ARV+VNR V+ +    +L+PS+  +  +P  L 
Sbjct: 3   KWLLTNKKADF---KALARANGIDQVTARVMVNRGVAEEDFDAYLHPSLDQIR-NPHDLK 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D+AA  + +AI   +KI I GDYD+DG  S  ++ + L  C  + +  +P RI DGYG
Sbjct: 59  DVDRAADLLSEAIDAGKKIRIIGDYDIDGIQSTYILHQALLTCQADVDYVLPKRIEDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------SE 187
            N  L+E     G  LIIT D G  + +A+  A + G+ VIV DHH+V            
Sbjct: 119 LNSHLVEDAHESGVSLIITCDNGIAAKEAIARAKDLGMMVIVTDHHEVPFAMADGKRLDR 178

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
             PA A+VNP + D       +C A V + ++ ++Y        +      +  L+  A 
Sbjct: 179 LPPADAIVNPKQADCPYPFKEICGAVVAWKLVFVLYEKRGVSVTLA-----MDFLENAAF 233

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306
           ATV DV+PL+  NR  V  GL   R+  NPG+ AL+    I    ++A ++G+++GP +N
Sbjct: 234 ATVGDVMPLVDENRTIVSLGLERLRKTSNPGMAALMRVREIDPDHLSAYHIGFILGPCLN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  +   +RLL   + ++  +LA  L  LN+ R+ M +  LE A  ++  +  D  
Sbjct: 294 AAGRLETAEKSTRLLEEKEPEKAWVLAEDLAALNETRKAMTARGLEDAFTQI--KEGDYA 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMV 425
           +  V+V+   + H  I GL+A ++KE   RP F ++    +G   GSGRSI  + + + +
Sbjct: 352 KDPVLVIYLPKLHESIAGLVAGKVKESLWRPCFILTDASAEGLVKGSGRSIPPYSMFEEM 411

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +    + ++V+ GGH MAAGL++ R     L       A+  +      P   ID  +  
Sbjct: 412 NRC--KDLMVQFGGHPMAAGLSLRRDKIDSLRRALN--ANCTLTEDDLLPKIHIDVPMPL 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             + I+L++ L+   P+G GNP P+FA  N  ++S+R +      L+ +   + S  ++ 
Sbjct: 468 HYITISLVEELKRLEPFGNGNPKPLFAVRNVLVRSLRTMGREGQFLKFSLR-EGSSEVEG 526

Query: 544 IAF---RVYGTPLGEFLMQSRGKRM----------HVTGHLCVNYWRGSKRCQLRVLDAS 590
           + F   R + T + E   Q   +             +     +N +RG K  QL + +  
Sbjct: 527 VYFGDARAFATAVEEAYGQGSWEEFCHGFRRDLAVRMVYEPQINSYRGRKSLQLVIREIE 586

Query: 591 P 591
           P
Sbjct: 587 P 587


>gi|153940003|ref|YP_001392042.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum F str. Langeland]
 gi|152935899|gb|ABS41397.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum F str. Langeland]
 gi|295320055|gb|ADG00433.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum F str. 230613]
          Length = 593

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 180/605 (29%), Positives = 294/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFRMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSIE +++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIEEYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIDAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|332289943|ref|YP_004420795.1| ssDNA exonuclease RecJ [Gallibacterium anatis UMN179]
 gi|330432839|gb|AEC17898.1| ssDNA exonuclease RecJ [Gallibacterium anatis UMN179]
          Length = 576

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 293/565 (51%), Gaps = 18/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++ R+  +R ++ +     LN +++ ++P P +LT  ++A   +++A +  ++I+I
Sbjct: 21  NADPLLDRIYRSRGIASE---AELNYALKYMLP-PSLLTHLEQATALLIEAYHQQKRIVI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S+A+ +  L        +  +PDR   GYG + S+ +  +++ AQL+ITV
Sbjct: 77  VGDFDADGATSIAVAVFALRQLGFQSVDFLVPDRFEQGYGLSVSVAQDALDKQAQLVITV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + + Y     + VIV DHH    +   A  +VNPN         +L   GV F
Sbjct: 137 DNGVSSLEGVDYLKQHQVQVIVTDHHLPGEKLPNADVIVNPNLAHCGFPSKYLAGVGVTF 196

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            ++V +    RQ          +   LLD VAL TV DVVPL   NR  V +GL   R Q
Sbjct: 197 YLMVALRAAFRQQGLFADKKEPNFAELLDFVALGTVADVVPLDHNNRILVSQGLARIRAQ 256

Query: 275 -GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
             + G++ALIE  N+  + I + +LG+ I P +NA GRI   ++G  LL+S+  ++   L
Sbjct: 257 HCHCGIRALIEVANLDITQIVSSHLGFSIAPRLNAAGRIDNMSIGVELLLSETMEQARAL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A++LD LN+ R+ +E+ M ++A   +   +    +    I +    WH G++G+LAAR+K
Sbjct: 317 ALELDTLNKTRKEIETGMKQEALHYLRELKPVYQENTFAIALYRPDWHQGVLGILAARMK 376

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVE 449
           ++F RP+   + E++G   GS RSIEG  I  ++     +    ++K GGHAMAAGL++ 
Sbjct: 377 DQFHRPTAIFTQEDEGILRGSARSIEGLHIRDLLDHIHSQHPEIIIKFGGHAMAAGLSIH 436

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           +  F      F ++A + +       V   DG L +  +N++  +ML+ AGP+G   P P
Sbjct: 437 QQYFPEFQRLFNQYAKSWLDEKSLQGVIYTDGELGSQQMNVSTAEMLQFAGPWGQHFPEP 496

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     ++   R+V   HL+M  E  Q      AI F V      +  +    K   + 
Sbjct: 497 QFDGE-FRILQQRLVGEKHLKMLLEPIQGGGLFDAIQFNVDTRRFPDLSI----KTARMV 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
            HL +N +RG+++ QL V     +E
Sbjct: 552 YHLSINEYRGNRQVQLLVNYIEALE 576


>gi|153004194|ref|YP_001378519.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027767|gb|ABS25535.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp.
           Fw109-5]
          Length = 599

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/587 (33%), Positives = 289/587 (49%), Gaps = 27/587 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW+           LA   +     + ARVL  R +     A+ FL   +  L PDP  
Sbjct: 26  RRWIETAVDAAAAARLAEALRL--HPVAARVLAGRGLADPADAEAFLASRLSEL-PDPFT 82

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   D A  R+VQA+   E+I  +GDYDVDG  S AL+  FL     +   Y P R+V+G
Sbjct: 83  MKGMDAAVSRLVQAVEAGERIACYGDYDVDGVTSTALLCGFLRAAGADVVTYTPHRLVEG 142

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + K   +GA+L++T+DCG TS + ++ A   G+D +V+DHH V  E   A A+
Sbjct: 143 YGLNTEAVRKLAAQGARLLVTLDCGITSVEEVRAAAALGLDTVVVDHHTVPVELPAARAI 202

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVC 251
           +NP++         L A GV F + + + R LR+  +        +L   LDLVAL T+ 
Sbjct: 203 LNPHQPGCAYPSKGLAAVGVTFALAMALRRTLRERGRFGGGRAEPNLKDALDLVALGTIA 262

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGG 309
           DVVPL+G NR  V  GL    +   PGL AL     I+    +TA  +G+ + P INA G
Sbjct: 263 DVVPLVGANRILVRWGLEAIAKSRRPGLCALKRVAGIAEGGEVTAGQVGFRLAPRINAAG 322

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++  G RLL+SDD      LA +LD  N  R+ +E  +L++A      +     +  
Sbjct: 323 RLDDAGRGVRLLLSDDEATARALAEELDRENAARQEIERRILDEATEDARARVGAGVRGL 382

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V  +  D WH G+VG++A+R+ E+F RP+  ++  E+G G GSGRSIE F +   ++   
Sbjct: 383 V--LARDGWHAGVVGIVASRIVERFHRPAVLVA-LEEGSGKGSGRSIEAFHLYDALAAC- 438

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             G L + GGH  AAG+TVER +       F+  A   +      P  +IDG L    V 
Sbjct: 439 -SGHLARFGGHRHAAGVTVERGSLAAFRAAFEAHAAAQLAEEDLVPRCRIDGWLEERDVT 497

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFR 547
             + + L   GP+GAG+P PVFA         R V    AHL++         + AI F 
Sbjct: 498 ERIAEDLAKLGPFGAGHPEPVFALRGAA-TRARTVGAGNAHLKLAL----GRGIDAIGFG 552

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           +         + +    +     L  + W G++R QL++ D  P   
Sbjct: 553 MGDR------LAACAGPVEAAFTLGFDAWDGARRLQLKLRDVRPAAA 593


>gi|313895662|ref|ZP_07829218.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975788|gb|EFR41247.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 662

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/584 (29%), Positives = 279/584 (47%), Gaps = 28/584 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+    +E    A A  +   +  +VA++L +R + + D A  FL+P       DP +
Sbjct: 3   KEWII---EEPAAEADAFARTAGVAPLVAQILWHRGIRTPDAADAFLHPE-EAPFHDPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D + AA RI+ AI     I+++GDYDVDG  S  L+ + +     + + YIP+R  +G
Sbjct: 59  MADMEIAAARILDAIERHVPIVVYGDYDVDGMTSTTLLTKNIRALGGDVSYYIPNRFTEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +   EG  L++TVDCG  S +A+       +D+IV DHH   +E  PA A+
Sbjct: 119 YGINLPALRQIHEEGCALLVTVDCGIASVEAVAEMRGV-LDIIVTDHHLPGTELPPALAV 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP+R D    +  L   GV F +   +++   Q             LD+ AL TV D+V
Sbjct: 178 LNPHRADCPYPEKELAGVGVAFKLCQALWQRRAQRLY-------EDDLDIAALGTVADLV 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR  V +GL V       G++ALI         I A ++G+ + P +NA GR+  
Sbjct: 231 PITGENRKIVRQGLRVMSENPCVGIRALISVAGLEDKKINAGHVGFQLAPRLNAAGRLET 290

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G  LL S+D+ +   +A +L+ LN  RR +E  +L +A+  +     D+     IVV
Sbjct: 291 ARHGVALLSSEDAVDAARIAGELNGLNTERRGLEQEILTEAQRSLADFTPDV---PAIVV 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W+ G++G++A+RL E + RPS  ++ +E     GS RSI G  +   +S   E   
Sbjct: 348 ASEDWNAGVIGIVASRLVETYYRPSIVLTRQE-NVYKGSCRSIAGLHMYDALSACRE--T 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHAMAAGL+V           F  +    +      P  +I+ ++  +   I L+
Sbjct: 405 LIQFGGHAMAAGLSVLPERLEDFRAAFSAYVREHLHPSDFIPKTRIEALVPPTDWTIPLV 464

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + L    PYG GNP PVF   + +  S   +     HL++   + +   +  + +     
Sbjct: 465 EELALLEPYGMGNPRPVFGCRDMRPTSADAIGAEGKHLRLALGTPEHR-VAGLYWNH--- 520

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             GE       + + +     +N W+G+   Q  V    P    
Sbjct: 521 --GELAAVLAEESVDIAYVPSINEWQGTYSVQCMVDSILPAACE 562


>gi|253998380|ref|YP_003050443.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp.
           SIP3-4]
 gi|253985059|gb|ACT49916.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp.
           SIP3-4]
          Length = 568

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 268/564 (47%), Gaps = 24/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++A++L  R V        L  S+  L+P P  LT+  + A  +  AI     +++
Sbjct: 21  GLSPLLAQLLAARGVKT---LVQLEASLAGLIP-PDRLTNNTRMAALLADAIVAKRSLLV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
            GDYD DGA + A+M+R L       +  +P+R   GYG  P ++E         IITVD
Sbjct: 77  VGDYDADGATATAVMVRGLRMLGAVVDFLVPNRFEYGYGLTPEIVELAAQSKPDFIITVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S D +  A   G+ V+V DHH        A  +VNPN+        HL   GV F 
Sbjct: 137 NGIASVDGVARANALGMSVLVTDHHLPGDHVPAAACIVNPNQHGCDFPSKHLAGVGVAFY 196

Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
           V++ +   +R           +L SLLDLVAL TV D+V L   NR  V +GL   R  Q
Sbjct: 197 VMLALRAEMRARGLFEGKAEPNLTSLLDLVALGTVADLVKLDDNNRILVEQGLRRIRAGQ 256

Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
            +PG+  L+           A++LG+ +GP +NA GR+ +  LG   L+++D Q    +A
Sbjct: 257 CSPGILWLMRLAGREPASSCAQDLGFSVGPRLNAAGRLDDMTLGISCLLAEDDQSAHAMA 316

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +L  LN  RR +E+ M E A A++     D +    + +    WH G++G+LA+R+KE+
Sbjct: 317 QQLHALNHERRSIEADMQESALAEL--DGLDAEGRYSLSLYQPDWHQGVIGILASRIKER 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
           + RP  A +   DG   GSGRSI G  +   +      E  +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQAGDGVLKGSGRSIPGLHLRDALDLLSKREPDLILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +  R    F+     ++       + ++DG L    ++  +   L+    +G G P P+F
Sbjct: 435 DMERFRLGFESVVTGLLTPADLESIIEVDGALTLDDMHWDVAVALQR-QVWGQGFPPPMF 493

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
              + ++ + R+V   HL++T  ++    + AI FR           +   + +     L
Sbjct: 494 C-DDFEVVAQRIVGGKHLKLTLSTR-GRAVDAIFFRQ---------EEFLPQYVTAVYEL 542

Query: 572 CVNYWRGSKRCQLRVLDASPVEGH 595
             N + G++  QL +    PV   
Sbjct: 543 QTNAFNGARNVQLLIKHWQPVAAQ 566


>gi|315147384|gb|EFT91400.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX4244]
          Length = 770

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANRQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|294781599|ref|ZP_06746935.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis PC1.1]
 gi|307289228|ref|ZP_07569184.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0109]
 gi|294451295|gb|EFG19761.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis PC1.1]
 gi|306499937|gb|EFM69298.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0109]
 gi|315037102|gb|EFT49034.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0027]
 gi|315164137|gb|EFU08154.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1302]
 gi|329571917|gb|EGG53595.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1467]
          Length = 770

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G + ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVSGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQGTS---DVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|329296876|ref|ZP_08254212.1| ssDNA exonuclease RecJ [Plautia stali symbiont]
          Length = 575

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/552 (32%), Positives = 270/552 (48%), Gaps = 18/552 (3%)

Query: 49  NRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108
            R V        L    + L+P    L   ++A   + Q +    +I++ GD+D DGA S
Sbjct: 31  QRGVKDA---AELERGAKFLLP-WQSLGGIERAVTLLHQMLQQQRRIVVVGDFDADGATS 86

Query: 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168
            AL +  L     N +  +P+R  DGYG +P ++E+    GA+LI+TVD G +S+  +  
Sbjct: 87  TALTVLALRSMGGNVDYLVPNRFEDGYGLSPEVVEQARARGAELILTVDNGISSHAGVDT 146

Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228
           A   GI V++ DHH        A A+VNPN  D       L   GV F +++ +   LRQ
Sbjct: 147 AHQHGILVLITDHHLPGETLPAAEAIVNPNLSDSAFPSRSLAGVGVAFYLMLALRAHLRQ 206

Query: 229 DNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIE 284
            N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  +   G++AL++
Sbjct: 207 QNWFSDGRSEPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRAGIRALLD 266

Query: 285 RVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
             N     + A +LG+ +GP +NA GR+ + ++G  LL+++D  +  MLA +LD LNQ R
Sbjct: 267 IANRDARQLAASDLGFAVGPRLNAAGRLDDMSVGVALLLTEDIAQARMLASELDALNQTR 326

Query: 344 RLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           + +E  M  +A A     +         +      WH G+VG+LA+RLKE+F RP  A +
Sbjct: 327 KEIEQGMKSEALALCDELERQHRDLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAFA 386

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460
              DG   GSGRSI G  +   +        G+++K GGHAMAAGL++E   +      F
Sbjct: 387 PAGDGTLKGSGRSIAGLHLRDALERIDTLYPGLIIKFGGHAMAAGLSLEEAKYDEFRQRF 446

Query: 461 QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS 520
                  +       V   DG L+A    +   +ML  AGP+G   P PVF     KL  
Sbjct: 447 AALIDEWLEGEAMQGVMWSDGELHAQEFTLHTAEMLREAGPWGQAFPEPVFDGQ-FKLLQ 505

Query: 521 IRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
            R+V   HL++  E       L  IAF V  +   +    S  +++ +   L +N +RG+
Sbjct: 506 QRLVGERHLKVMVEPLGGGPLLDGIAFNVDTSLWRD----SSVRQVQLAYKLDINGYRGN 561

Query: 580 KRCQLRVLDASP 591
           +  QL +    P
Sbjct: 562 RSVQLIIDHIWP 573


>gi|320528879|ref|ZP_08029971.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           artemidis F0399]
 gi|320138509|gb|EFW30399.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas
           artemidis F0399]
          Length = 662

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/584 (29%), Positives = 280/584 (47%), Gaps = 28/584 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+    +E    A A  +   +  +VA++L +R + + D A  FL+P       DP +
Sbjct: 3   KEWII---EEPAAEADAFARTAGVAPLVAQILWHRGIRTPDAADAFLHPE-EAPFHDPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D + AA RI+ AI     I+++GDYDVDG  S  L+ + +     + + YIP+R  +G
Sbjct: 59  MADMEIAAARILDAIERHVPIVVYGDYDVDGMTSTTLLTKNIRALGGDVSYYIPNRFTEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +   EG  L++TVDCG  S +A+       +D+IV DHH   +E  PA A+
Sbjct: 119 YGINLPALRQIHEEGCALLVTVDCGIASVEAVAEMRGV-LDIIVTDHHLPGTELPPALAV 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP+R D L  +  L   GV F +   +++   Q             LD+ AL TV D+V
Sbjct: 178 LNPHRADCLYPEKELAGVGVAFKLCQALWQRRAQRLY-------EDDLDIAALGTVADLV 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR  V +GL V       G++ALI         I A ++G+ + P +NA GR+  
Sbjct: 231 PITGENRKIVRQGLRVMSENPCVGIRALISVSGLEDKKINAGHVGFQLAPRLNAAGRLET 290

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G  LL S+D+ +   +A +L+ LN  RR +E  +L +A+  +     D+     IVV
Sbjct: 291 ARHGVALLSSEDAVDAARIAGELNGLNTERRGLEQEILTEAQRSLADFTPDV---PAIVV 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W+ G++G++A+RL E + RPS  ++ +E     GS RSI G  +   +S   E   
Sbjct: 348 ASEDWNAGVIGIVASRLVESYYRPSIVLTRQE-NVYKGSCRSIAGLHMYDALSACRE--T 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHAMAAGL+V           F  +    +      P  +I+ ++  +   I L+
Sbjct: 405 LIQFGGHAMAAGLSVLPERLEDFRAAFSAYVREHLHPSDFVPKTRIEALVPPTDWTIPLV 464

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + L    PYG GNP PVF   + +  S   +     HL++   + +   +  + +     
Sbjct: 465 EELALLEPYGMGNPRPVFGCRDMRPASADAIGAEGKHLRLALGTPEHR-VSGLYWNH--- 520

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             G+       + + +     +N W+G+   Q  V    P    
Sbjct: 521 --GDLAAVLAEESVDIAYVPSINEWQGTYSVQCMVDSILPAACE 562


>gi|170755730|ref|YP_001782370.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum B1 str. Okra]
 gi|169120942|gb|ACA44778.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum B1 str. Okra]
          Length = 593

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 181/605 (29%), Positives = 296/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVKDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF   G    +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVGEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|307269501|ref|ZP_07550840.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX4248]
 gi|306514121|gb|EFM82697.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX4248]
          Length = 770

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G + ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVSGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENVPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQGTS---DVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|332522136|ref|ZP_08398388.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313400|gb|EGJ26385.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 734

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/591 (28%), Positives = 277/591 (46%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           ++W     +   +    + +K  +    A++L  R + + +    FL   +  L  DP +
Sbjct: 6   YQWEIQEEKPD-SGFFQLAKKEGLSQESAQILYERGIQTPEQVDTFLRADLSHLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI QAI N+E+I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMEKAVSRIRQAIENAERILVYGDYDADGMTSASIMKETLEMMGAEVRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G + ++A+ +A  QG+DVIV DHH +      A+A
Sbjct: 124 YGPNLSVYKYFIQQEAISLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHGLPDTLPEAFA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F +   +   +               LDLVA+ TV D+
Sbjct: 184 IIHPEHPDAEYPFKYLAGCGVAFKLATALLEEVP-----------TEFLDLVAIGTVADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312
           V L G NR  V  GL + R     GL+ L+    +       E +G+ I P +NA GR+ 
Sbjct: 233 VSLQGENRILVKNGLSILRHTERVGLQELMALAGVDFEQFNEEVIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A  +++ N+ R+ +   + ++A   V           V V
Sbjct: 293 DPNPAIELLTGFDEEEALAIAEMINLKNEERKALVQTIYDEALQMVDL------SKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+  +    ++  ++G   GS RSI+  +I    +   +  
Sbjct: 347 LAKEGWHPGVLGIVAGRIMEEISQTVIVLN-CDNGYAKGSARSIDAINI--FEALNAKRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++   GGHA AAG+T+   N   L      F               ID +L+   ++I L
Sbjct: 404 LMTAFGGHAGAAGMTLPVDNLEALAQALSDFIVENHIDCKQKNSLMIDSILDLEHLSIEL 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           +  L+S  P+G GNP PVF   + +L   R +     HL++  + + S T   +AF    
Sbjct: 464 LKSLQSIAPFGMGNPKPVFLVQDFQLLQARTLGANSAHLKLRLQ-KGSVTTDLLAFNQ-- 520

Query: 551 TPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              G  L   +  R + +   L VN W G    QL ++DA          +
Sbjct: 521 ---GHLLQDFQQARGLELAVTLSVNSWNGKTTLQLMLVDARVTGLQLIDIR 568


>gi|81300695|ref|YP_400903.1| exonuclease RecJ [Synechococcus elongatus PCC 7942]
 gi|81169576|gb|ABB57916.1| exonuclease RecJ [Synechococcus elongatus PCC 7942]
          Length = 684

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 171/585 (29%), Positives = 289/585 (49%), Gaps = 26/585 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP-L 73
            RW+        ++A  +     +P ++A+VL+NR + +I  A+D+L P  + L PDP  
Sbjct: 29  QRWILAPSS---SQATVLATALNLPPVLAQVLINRGLGAIADARDYLKPEQQEL-PDPRE 84

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
              D  ++   + +AI + ++I I GDYD DG  S AL++R        A   IP R+ +
Sbjct: 85  EFEDLVESVLLLEKAIRSGDRIAICGDYDADGMTSTALLLRTFRQLGAKAEYAIPSRMQE 144

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N  ++E+F   G ++++TVD G  +Y  +  A   G+ VIV DHH +  E  PA A
Sbjct: 145 GYGINERIVEEFAASGVRVVLTVDNGIAAYQPIARARELGLTVIVTDHHDLPPELPPANA 204

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP  L + S    L   GV +++ + +     +         +  LL+L  L T+ D+
Sbjct: 205 ILNPKLLPEESPYHGLAGVGVAYVLALCVAEQFNRQ-----AELIRPLLELYTLGTIADL 259

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGR 310
            PL G+NR ++ +GL +  +    G++AL+E   +      +  E++G+ +GP INA GR
Sbjct: 260 APLTGVNRRWLQRGLRLLPQSQLVGVQALMEAAGVKTSDRSLKPEDIGFKLGPRINAIGR 319

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           IG+  +   LL ++D    + LA   +V NQ RR +   + E+A A V  +  D +Q +V
Sbjct: 320 IGDPQVVIELLTTEDRDRAQELAGICEVTNQERRGLCDRITEEAIAIVEAEGFDNRQTAV 379

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +V+    WH G++G++A+RL E++G P F  S+EEDG   GS R    FD+   +     
Sbjct: 380 LVLAQPNWHHGVIGIVASRLVERYGVPVFISSYEEDGHLRGSARGTPEFDVFAALEHC-- 437

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L + GGH  A G ++   N        + FA + +P     P  +ID  L  +  ++
Sbjct: 438 RDVLGRFGGHRAAGGFSLSAENLSAWRSRLEAFAADCLPVDCRRPAIQIDAELPIALASL 497

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L +  +   P+G  N  P++   N  +   R +     HL++T     S+ + A+ +R 
Sbjct: 498 NLFEQQQQLQPFGIANDEPLYWAKNLAILDQRRMGNGQEHLKLTLSDGQSK-VTAVYWRW 556

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              P+ E        R+ V  +L  N W   +  QL +      +
Sbjct: 557 GDRPVPE-------DRVDVAYYLRENIWNDRRELQLEIAGIRLSQ 594


>gi|291618682|ref|YP_003521424.1| RecJ [Pantoea ananatis LMG 20103]
 gi|291153712|gb|ADD78296.1| RecJ [Pantoea ananatis LMG 20103]
          Length = 579

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/554 (33%), Positives = 272/554 (49%), Gaps = 19/554 (3%)

Query: 49  NRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108
            R V+       L    + L+P    L+  DKA   + QA+ +   IM+ GD+D DGA S
Sbjct: 34  QRGVTNA---AELERGAKNLLP-FSALSGIDKAVNLLHQALLDGRCIMVVGDFDADGATS 89

Query: 109 VALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167
            AL +  L      N    +P+R  DGYG +P ++E+    GA++I+TVD G +S+  + 
Sbjct: 90  TALTVLALRSMGCSNVQYLVPNRFEDGYGLSPEVVEQARARGAEMILTVDNGISSHAGVA 149

Query: 168 YATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227
            A   GI V+V DHH        A A+VNPN  D       L   GV F +++ +   LR
Sbjct: 150 LAHQHGIAVLVTDHHLPGETLPDADAIVNPNLPDCHFPSRSLAGVGVAFYLMMALRAHLR 209

Query: 228 QDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALI 283
                       +L  LLDLVAL TV DVVPL   NR  V +GL   R  +  PG+KAL+
Sbjct: 210 TQGWFGVTRSEPNLADLLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRPGIKALL 269

Query: 284 ERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
           E  N     + A +LG+ +GP +NA GR+ + ++G  LL++DD  +  MLA +LD LNQ 
Sbjct: 270 EIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLTDDLSQSRMLASELDALNQM 329

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401
           R+ +E  M  +A A      ++     +        WH G+VG+LA+RLKE+F RP  A 
Sbjct: 330 RKEIEQGMQSEALALCQKLENEQTDLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAF 389

Query: 402 SFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
           +   DG   GSGRSI G  +   +        G++ K GGHAMAAGL++E   +      
Sbjct: 390 APAGDGMLKGSGRSIAGLHLRDALERLDTLHPGLMQKFGGHAMAAGLSLEEARYDEFRQR 449

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
           F       +       V   DG L  +  ++   ++L  AGP+G   P P F     +L 
Sbjct: 450 FADLVGEWLAGEALQGVIWSDGALQPAEFSLQTAEVLRDAGPWGQSFPEPAFDGR-FRLL 508

Query: 520 SIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578
             R+V   HL++  E  +    +  IAF V  T   +    S  +++ +   L +N +RG
Sbjct: 509 QQRLVGERHLKVMVEPLEGGPLIDGIAFNVDTTLWPD----SSVRQVELAYRLDINEYRG 564

Query: 579 SKRCQLRVLDASPV 592
           ++  QL +    P+
Sbjct: 565 NRSVQLIIEHLWPL 578


>gi|149010771|ref|ZP_01832142.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765252|gb|EDK72181.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP19-BS75]
          Length = 740

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 6   YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 64  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSIPETLPDAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQILEDYVREKGADAGGKNKLNLDEELDLEALSLET 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEVSFEVVAFGQGR 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMMDAR-VEGVQLFNIR 568


>gi|323127505|gb|ADX24802.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 735

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/583 (29%), Positives = 276/583 (47%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIEDKKPDDG-FFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI QAI + E+I+++GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMEKAVLRIRQAIEDGEQILVYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++AL YA  QGIDVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEALSYAQTQGIDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+   +I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLTMLKHTERVGLQELMSLSSIDLDQFTEDAVGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKEKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    + +  
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLA-IDNGFAKGSARSLEAINI--FEALSGN 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L D   +F               ID  L+   +++
Sbjct: 402 RDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLEDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             +  L+   PYG  +P P+F   + K+   R +     HL+    SQ   +   +AF  
Sbjct: 462 DTLKSLDKLAPYGMDHPKPIFYVKDIKVSQARAMGQDQSHLKFKV-SQGKTSFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L +F   +    + +   L VN+W G+   QL ++DA  
Sbjct: 521 -GSQLQDFQQATG---LELAVTLSVNHWNGNTSLQLMLVDARV 559


>gi|315172399|gb|EFU16416.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1346]
          Length = 748

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++  +P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETRKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|315145039|gb|EFT89055.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX2141]
 gi|315162331|gb|EFU06348.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0645]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    I+ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAISEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569


>gi|327535254|gb|AEA94088.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis OG1RF]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|315027846|gb|EFT39778.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX2137]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|328946473|gb|EGG40613.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK1087]
          Length = 739

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKEAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLRDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEEMPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRIGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLTELADILTAYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    +D    + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQED-AAFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|258645308|ref|ZP_05732777.1| single-stranded-DNA-specific exonuclease RecJ [Dialister invisus
           DSM 15470]
 gi|260402657|gb|EEW96204.1| single-stranded-DNA-specific exonuclease RecJ [Dialister invisus
           DSM 15470]
          Length = 667

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/586 (30%), Positives = 281/586 (47%), Gaps = 30/586 (5%)

Query: 17  RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           RWV      E           + IP+  AR+++ R +S +     FL  ++  L  DP +
Sbjct: 9   RWVFRGASSEEKVAVPDFFNLNNIPEGTARIMMRRGISTEEKLTHFLYDTLDNL-SDPFL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +    +A RRI+QAI   EKI+I+GDYDVDG  S ++ +R L     + N YIP R  +G
Sbjct: 68  MKGMQQAVRRIIQAIDLKEKIVIYGDYDVDGITSTSICVRCLRKLGADVNFYIPLREEEG 127

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + K   EG  L+ITVDCG +S D +     Q +D+I+ DHHQ         A+
Sbjct: 128 YGLNRDAINKLSKEGVSLLITVDCGISSADLVA-EAPQSLDIIITDHHQPPKVLPDCVAV 186

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP++ D       L   GV F +   IY+ L  ++           ++LVAL T+ DVV
Sbjct: 187 LNPHQEDCPYPYKELAGCGVAFTLCRGIYKELYNEDY-------KENIELVALGTIADVV 239

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-----ISSPITAENLGYMIGPSINAGG 309
            L G NR  V +G+         GL AL+             + A+ + + + P +NA G
Sbjct: 240 SLTGENRILVKEGMARFLLTPIKGLSALLRITGLVNEDTKEILHADYISFGLAPRLNAAG 299

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           RI  +  G  L+ ++  +E E LA  L   N  R+ +E  + E+A  ++      IQ   
Sbjct: 300 RITHAKYGVELMTTESGEEAEALAQILCDTNIERQHIEREIYEEALQRIAEL--QIQDDL 357

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+V++G  WHPG++G++A+R+ E + RP   I+    G G GS RSI  F+I + +    
Sbjct: 358 VLVIDGKDWHPGVIGIVASRILELYHRPVLVITVRN-GVGKGSCRSISAFNIHEALEK-- 414

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             G L++ GGH MAAG ++              +A  I+      PV +++  L    VN
Sbjct: 415 MAGFLIQYGGHKMAAGFSIPAERISEFRKRINDYAKGIITVDDRIPVLELEESLPLDEVN 474

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFR 547
           I  I  L+   PYG+ NP P+FA     +++ R +     H +    SQ+ E ++AI + 
Sbjct: 475 IEFIRSLDLLEPYGSDNPKPLFASFRVFVETARRIGNDRKHFKCRL-SQNREPVEAIFWG 533

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                +G+      G  + +     ++ W G +  QL   D  PV+
Sbjct: 534 -----IGDKDPCCPGDIVDIVYEPEIHDWYG-EHVQLICKDIRPVK 573


>gi|241896328|ref|ZP_04783624.1| recombination protein J [Weissella paramesenteroides ATCC 33313]
 gi|241870308|gb|EER74059.1| recombination protein J [Weissella paramesenteroides ATCC 33313]
          Length = 768

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 179/579 (30%), Positives = 284/579 (49%), Gaps = 27/579 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S ++W              I++   + +++A++LVNR     + A  FL P +  L  DP
Sbjct: 4   SRYQWEF-PEVSNQKAVKTISEAFGVTELIAKILVNRGYDTIEAANAFLRPDLSGLY-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  R++QAI N +KI+++GDYDVDG  S A+M   L     N + ++P R  
Sbjct: 62  FLLHDMDKAITRLMQAIDNGQKIIVYGDYDVDGMTSTAIMTWALELMGANVDYFVPSRFS 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN +  ++F  EG QL++TVD G +  D + +  +QGIDVI+ DHH++  E   A 
Sbjct: 122 DGYGPNLANYQRFAAEGMQLLVTVDNGVSGKDEVAWLMSQGIDVIITDHHELPEELPIAT 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +     G L  AGV F V   +                  +LDL AL TV D
Sbjct: 182 AIVHPRHPEGEYPFGGLSGAGVAFKVASALLEE-----------PADEVLDLAALGTVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           V+ L   NR  V +GL   +    PGL AL+       S I +  +G+ I P +NA GR+
Sbjct: 231 VMSLTDENRIIVKQGLENLKLDPRPGLAALLAAAGTQLSDIDSSTIGFTIAPRLNALGRL 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++  G +LL+ DD  + + LA  ++ LNQ R+ + + +          Q   ++   V+
Sbjct: 291 EDATTGVQLLLMDDIGDAKPLADHINSLNQERQQLVTTITAA----AQEQAAQLRDDPVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV G+ WH G++G++A++L E+ G+P+  ++   D +  GSGRS+  FD+    +     
Sbjct: 347 VVAGENWHEGVLGIVASKLVEQTGKPTIVLNINGD-EMKGSGRSVPFFDL--FTALDGHR 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++   GGHA AAG+TV   N   L       A     A    P  +I   ++A+     
Sbjct: 404 DLMTAFGGHASAAGMTVPTNNLTALRAALHDAAAQQELANAQKPNLQIAAKVSAADFTKE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYG 550
             D L+   P+G GNP P+F      +  ++ + +  HL+      D++ L  IAF    
Sbjct: 464 NFDNLQVLAPFGEGNPEPLFMLDLLGVNQVKTMSDGKHLRF-IAQTDTDQLPVIAFGWGN 522

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                  +      + + G +  N +RG+   QL + D 
Sbjct: 523 QASA---LAGHFSSLQIIGTMSQNSYRGNISYQLMLRDM 558


>gi|254281924|ref|ZP_04956892.1| single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium NOR51-B]
 gi|219678127|gb|EED34476.1| single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium NOR51-B]
          Length = 575

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/582 (28%), Positives = 263/582 (45%), Gaps = 20/582 (3%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
              ++   R  +      +  ++ R+   R +S   A   L+ ++  L+P P  L   D+
Sbjct: 3   PEIKQRPARITSALASSGLSPLLQRIYAARGISDTQA---LDLTLGRLLP-PGQLHRADE 58

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNP 139
           AA  +  AI    ++++ GD+D DGA S  L +  L    +   +  +P+R   GYG  P
Sbjct: 59  AAMLLADAIEGEARVVVVGDFDADGATSCCLAVSVLREMGLQEVSYLVPNRFEYGYGLTP 118

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            ++         LIITVD G  S+D +  A + GI V+V DHH       PA  +VNPN+
Sbjct: 119 EIVAIAAERAPDLIITVDNGIASHDGVMAAQSAGISVLVTDHHLPGDTLPPADVIVNPNQ 178

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVP 255
                    L   GV+F VL  +   LRQ     L      +L + LDLVAL TV DVVP
Sbjct: 179 PRCTFPSKSLAGVGVMFYVLTALRAELRQRGWFELIGRDAPNLGNALDLVALGTVADVVP 238

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA-LIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313
           L   NR  V  GL   R          L E            +LG++ GP +NA GR+ +
Sbjct: 239 LDHNNRILVDAGLKRIRGGRGRPGIEALFEVAGRDYRQATSVDLGFVAGPRLNAAGRLED 298

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIV 372
            ++G   L++  +     LA +L  LN+ RR +E  M ++A  ++   + ++      + 
Sbjct: 299 MSVGIECLLATSTASARPLAQRLHDLNRERRDIEQNMQDEALDQLSHFELNETGLPFALS 358

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430
           +    WH G+VG+LA+R++E++ RP+   +   +G+  GSGRS+    I   +       
Sbjct: 359 LYDPAWHQGVVGILASRIRERYHRPTIVFADAGEGELKGSGRSLPSLHIRDALDRVATQN 418

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G++ + GGHAMAAGL++           F      ++        F  DG L++    +
Sbjct: 419 PGLVTRFGGHAMAAGLSLATNRLEDFRRAFDHVVAEMLGHQAPAAEFISDGALSSPEFCL 478

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
              +ML +AGP+G G P P F      +   R+V   HL++  ES     L AIAF V  
Sbjct: 479 ENAEMLAAAGPWGQGFPEPTFDGQ-FTVVEQRLVGEKHLKLRLES-GGAALDAIAFNVDL 536

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                         +     L +N +RG +  QL + +  P+
Sbjct: 537 GIWP----NPATNSIQALYRLGINQYRGDRSPQLVISELWPL 574


>gi|312899537|ref|ZP_07758867.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0470]
 gi|311293407|gb|EFQ71963.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0470]
 gi|315169853|gb|EFU13870.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1342]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|307277944|ref|ZP_07559028.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0860]
 gi|306505341|gb|EFM74527.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0860]
          Length = 770

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569


>gi|157151363|ref|YP_001450289.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076157|gb|ABV10840.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 764

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W         N      +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 29  SKYDWQFATNVTDENFLKK-AKKAGLDPSAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 86

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 87  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 146

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 147 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 206

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 207 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 255

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 256 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 315

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 316 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------EPKKPV 369

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 370 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 426

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 427 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTL 486

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD    + +AF  
Sbjct: 487 DTLKSFERLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-AAFEVVAFGQ 545

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 546 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 593


>gi|237796199|ref|YP_002863751.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum Ba4 str. 657]
 gi|229264065|gb|ACQ55098.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum Ba4 str. 657]
          Length = 593

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|183603447|ref|ZP_02716915.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576928|gb|EDT97456.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae CDC3059-06]
          Length = 744

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVEN-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSIPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQILEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F   N +++S R +    AHL++   S+   + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEVSFEVVAFGQGR 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                    S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMMDAR-VEGVQLFNIR 572


>gi|83644615|ref|YP_433050.1| single-stranded-DNA-specific exonuclease RecJ [Hahella chejuensis
           KCTC 2396]
 gi|83632658|gb|ABC28625.1| single-stranded-DNA-specific exonuclease RecJ [Hahella chejuensis
           KCTC 2396]
          Length = 552

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/560 (31%), Positives = 274/560 (48%), Gaps = 25/560 (4%)

Query: 45  RVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           R+   R V S D     L  S+  L+     L     AA  + +A+  +++I+  GD+D 
Sbjct: 3   RIYAARGVVSGDE----LEYSLSHLLQL-DSLAGAQSAAVILAEALQRNQRIIFVGDFDA 57

Query: 104 DGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           DGA S AL +  L        +  +P+R   GYG +P +++  ++    ++ITVD G  S
Sbjct: 58  DGATSTALGVLALRMFGAAYVDYIVPNRFEFGYGLSPEIVDVALSRKPDVLITVDNGIAS 117

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            D ++ A   G+ VIV DHH   +E   A A+VNPN+         +   GV+F V++ +
Sbjct: 118 IDGVKAAKRAGLQVIVTDHHLAGAELPEADAIVNPNQPGCDFPSKSIAGVGVIFYVMLAL 177

Query: 223 YRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277
            + LR             +L +LLDLVAL TV DVV L   NR  V +GL   R ++  P
Sbjct: 178 RQTLRDKGWFAATGMIEPNLANLLDLVALGTVADVVSLDANNRILVEQGLRRIRVKRCRP 237

Query: 278 GLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G+ AL++    +   + A +LG+ I P +NA GR+ +  +G  LL+++D  +  M+A +L
Sbjct: 238 GINALLQVAGRNQEKLGASDLGFSIAPRLNAAGRLEDMTVGIELLLTEDPAKALMIAQEL 297

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS-VIVVEGDRWHPGIVGLLAARLKEKFG 395
           D LNQ R+ +E  M  QA + +             + +  + WH G+VG+LA+R+K++  
Sbjct: 298 DGLNQARKEIERDMQAQALSILDRMNWTYDNPPAAVCLYDESWHQGVVGILASRIKDRLH 357

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNF 453
           RP  A +  ++G+  GS RSI G  I   +        G+L K GGHAMAAGL++   NF
Sbjct: 358 RPVIAFAPGDNGELKGSARSIPGLHIRDALDAVATRRSGLLSKFGGHAMAAGLSLRPENF 417

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
               + FQ+     V           DG L+   + + +   L++AGP+G   P P+F  
Sbjct: 418 TAFSEAFQEVVAAAVSVDDLQAKLLTDGELSPEELCMNMAIALKNAGPWGQSFPEPLFDG 477

Query: 514 PNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY-GTPLGEFLMQSRGKRMHVTGHL 571
              ++ S R+V   HL+M     +      AI F +   TP  E+       R+ V   L
Sbjct: 478 Q-FRIASCRIVGERHLKMALADSRSGNCYDAICFNIDPATPFSEW------DRVKVVFRL 530

Query: 572 CVNYWRGSKRCQLRVLDASP 591
            +N +RG    QL +    P
Sbjct: 531 DINEFRGHSNLQLLIEYLEP 550


>gi|255536193|ref|YP_003096564.1| Single-stranded-DNA-specific exonuclease recJ [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342389|gb|ACU08502.1| Single-stranded-DNA-specific exonuclease recJ [Flavobacteriaceae
           bacterium 3519-10]
          Length = 570

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 271/582 (46%), Gaps = 24/582 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W+    +       AI+         +++LV R +     A++F  P++  +  +P +
Sbjct: 3   QKWIYRP-EPDEETVDAISSSLGFGTFESKILVMRGIDNYQKAREFFKPNLNDIH-NPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132
           + D   A  R+  AI N EKIM++GDYDVDG  +VALM  +LS          YIPDR +
Sbjct: 61  MKDMQIAVDRVATAIENGEKIMVYGDYDVDGTTAVALMYLYLSKIVDKKYLEYYIPDRNI 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++   N G  LII +DCG  + D + YA +  ID I+ DHH    E   A 
Sbjct: 121 EGYGISIEGIDHAKNNGFSLIIALDCGIKAIDKVDYAKSLAIDFIICDHHLPGDEIPDAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D       L   GV F +   +  I +         +L  L DL+A++   D
Sbjct: 181 AVLDPKRKDCRYPFKELSGCGVGFKLCQGLNSIYKI-----PEAELFELTDLLAISIAAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V + G NR    +GL V R+  N GL+ LI    + +     N+ + I P INA GRI 
Sbjct: 236 IVSMTGENRVLAKQGLKVLRKSRNLGLRMLIPEEKL-ATFEISNIVFEIAPKINAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      L++SD+ ++   +   +  LN +RR M+ +   +A  +V  +     Q    V
Sbjct: 295 QGKAAVELMVSDNLKQAHQIVNDIITLNDSRREMDMSSTTEALLQV--EETQQVQNYTTV 352

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V G  W+ G++G++A+RL E + +P+   +   +G+ + S RS+  FD+   +    E  
Sbjct: 353 VYGSGWNKGVIGIVASRLTETYFKPTLVFTDGNNGEMVASARSVADFDVHDALENCSEF- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
             +K GGH  AAGL++E+  F +  + F+K     +      P   ID  +    +N   
Sbjct: 412 -FLKFGGHPAAAGLSMEKDKFDKFREKFEKVVSEKIQQHQKEPSLLIDSDVIPDDLNKDF 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQD-SETLQAIAFRV 548
                   P+G  N  P+ A  N K+   ++ +     HL+   + +     ++ + F  
Sbjct: 471 FSFHRKLAPFGPHNMKPILAMKNQKISGYVKTMGKDNCHLKFYIKQESTGRNIECVGF-- 528

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               LG+F+   R +   +      N+W+G+    L + D  
Sbjct: 529 ---KLGKFVEDFRNRPFDIAFTAEENHWKGNVTYYLNIRDVK 567


>gi|168183172|ref|ZP_02617836.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum Bf]
 gi|182673590|gb|EDT85551.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum Bf]
          Length = 593

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/605 (29%), Positives = 296/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A + G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKDLGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|116627958|ref|YP_820577.1| single strand DNA-specific exonuclease [Streptococcus thermophilus
           LMD-9]
 gi|116101235|gb|ABJ66381.1| exonuclease RecJ [Streptococcus thermophilus LMD-9]
 gi|312278546|gb|ADQ63203.1| Exonuclease RecJ [Streptococcus thermophilus ND03]
          Length = 736

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 171/592 (28%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + ++H +    A++   R +  + A +DFL   +  L  DP
Sbjct: 4   STYDWKINTKEPD-AGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G    +A+ YA  QG+DVIV DHH + S+   A
Sbjct: 122 DGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          +L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 YAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + +     GL+ L+    +  + I+ E + + I P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E + +A++++  N+ R+ +   + ++A + V           V
Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLESINI--FHALDDH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             I    GGHA AAG+T+   N  +L D    + ++            +D  L    +++
Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             I  LE   P+G  N  PVF   +  +   R +     HL+   + Q   +   +AF  
Sbjct: 462 DTIRSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFN- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            G  L EF        + +   L VN W G    QL + D        F  +
Sbjct: 520 KGHLLQEFQQAQG---LELAVTLSVNVWNGQTTLQLMLADVRVDNVQLFDFR 568


>gi|293382871|ref|ZP_06628789.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis R712]
 gi|291079536|gb|EFE16900.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis R712]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569


>gi|227518879|ref|ZP_03948928.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0104]
 gi|227553494|ref|ZP_03983543.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis HH22]
 gi|293389642|ref|ZP_06634097.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis S613]
 gi|312907658|ref|ZP_07766649.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis DAPTO 512]
 gi|312910275|ref|ZP_07769122.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis DAPTO 516]
 gi|227073670|gb|EEI11633.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0104]
 gi|227177364|gb|EEI58336.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis HH22]
 gi|291081035|gb|EFE17998.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis S613]
 gi|310626686|gb|EFQ09969.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis DAPTO 512]
 gi|311289548|gb|EFQ68104.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis DAPTO 516]
 gi|315576101|gb|EFU88292.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0309B]
 gi|315580675|gb|EFU92866.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0309A]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569


>gi|315168912|gb|EFU12929.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1341]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 176/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   A+
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAF 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|312903438|ref|ZP_07762618.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0635]
 gi|312951620|ref|ZP_07770515.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0102]
 gi|310630337|gb|EFQ13620.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0102]
 gi|310633314|gb|EFQ16597.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0635]
 gi|315152359|gb|EFT96375.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0031]
 gi|315158198|gb|EFU02215.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0312]
 gi|315577754|gb|EFU89945.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0630]
 gi|323480849|gb|ADX80288.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis 62]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|229549890|ref|ZP_04438615.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis ATCC 29200]
 gi|229304963|gb|EEN70959.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis ATCC 29200]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ I P +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIAPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|254422234|ref|ZP_05035952.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Synechococcus sp. PCC 7335]
 gi|196189723|gb|EDX84687.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Synechococcus sp. PCC 7335]
          Length = 819

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/600 (28%), Positives = 293/600 (48%), Gaps = 32/600 (5%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLM 69
            S    RW     Q   ++A  I    A+  ++A+VL+NR + + + + +FL+P    L 
Sbjct: 32  ASFPAQRWQIFPAQ--KSQADHIAAVTALSPLLAQVLINRGIYTPEQSWEFLDPETIQLP 89

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
                  D +K+   + QAI   EKI+I GDYD DG  S AL+MR L +        IP 
Sbjct: 90  SPLCEFPDLEKSLELLEQAITLEEKILICGDYDADGMTSTALLMRSLRYLGAQVAYAIPS 149

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYG N  ++E F   G  LI+TVD G T+Y  +  A   G+ +I+ DHH +  +  
Sbjct: 150 RMHEGYGINQRMVEDFHAAGGNLILTVDNGITAYAPISRAKELGLTIILTDHHDLPEQLP 209

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           PA A++NP  + + S    +   GV +++ V + + L +   +        LL L  L T
Sbjct: 210 PADAILNPKLIRESSPYRGVAGVGVAYVLAVCLAQRLNKQQDLTAT-----LLALFTLGT 264

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINA 307
           + D+ PL G+NR +V +GL +  +   PG++ALIE       + +  E +G+ +GP INA
Sbjct: 265 IADLAPLTGVNRRWVKRGLKLLPKSLIPGVQALIEVAGLSKETALRPEAIGFRLGPRINA 324

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM----ESAMLEQAEAKVLTQCD 363
            GRI +  +   LL +DD       AM+ +  N  RR M    E   +E  +A++ +   
Sbjct: 325 VGRIADPQIVIDLLTTDDVGVALQQAMQCEEANLLRREMCQIIEKQAIEWCDAQIESGLI 384

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDI 421
           ++Q+  V+VV    WH G++G++A+RL E++G P F  ++E++   +  GS RSI  F++
Sbjct: 385 NLQKERVLVVVQPDWHHGVIGIVASRLVERYGVPVFIGTYEDENKKEIRGSARSIPEFNV 444

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            + ++F   + ++ K GGH  A G +       ++      FA   +      P+ K+D 
Sbjct: 445 FEALTFC--DDLMNKYGGHQAAGGFSFRSNKLRQVKSRLSNFARKHLQPDHLKPLIKVDV 502

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSE 539
                 V + L   L+   P G  NP+PVF      +   +V+     HL++T   + S+
Sbjct: 503 HAPLEEVTLDLYQQLDQIHPCGIKNPDPVFWTAAVTIVEQKVIGKNSDHLKLTMAHKASD 562

Query: 540 -----TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                 ++AIA+R               + + +   L +N W+G +  +L ++   P + 
Sbjct: 563 DAQKVVMKAIAWRWAEYY-------PLPRILDIAYKLRLNEWKGHRTVELDLVGVRPSKP 615


>gi|229545699|ref|ZP_04434424.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1322]
 gi|300860375|ref|ZP_07106462.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TUSoD Ef11]
 gi|307275850|ref|ZP_07556989.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX2134]
 gi|307291873|ref|ZP_07571744.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0411]
 gi|229309149|gb|EEN75136.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX1322]
 gi|300849414|gb|EFK77164.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TUSoD Ef11]
 gi|306497139|gb|EFM66685.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0411]
 gi|306507542|gb|EFM76673.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX2134]
 gi|315029261|gb|EFT41193.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX4000]
 gi|315031947|gb|EFT43879.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0017]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 176/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   A+
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAF 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRKIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|315150413|gb|EFT94429.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0012]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 179/592 (30%), Positives = 288/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPGAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELSI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E GK   GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGKTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|307273101|ref|ZP_07554347.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0855]
 gi|306510086|gb|EFM79110.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0855]
          Length = 770

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|229827393|ref|ZP_04453462.1| hypothetical protein GCWU000182_02781 [Abiotrophia defectiva ATCC
           49176]
 gi|229788331|gb|EEP24445.1| hypothetical protein GCWU000182_02781 [Abiotrophia defectiva ATCC
           49176]
          Length = 580

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/587 (29%), Positives = 268/587 (45%), Gaps = 23/587 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW     +   +    I  +  I  I ARVLVNR +S D    ++LN   + L   P ++
Sbjct: 4   RWYMRTIRGDFD---GIAARFGISKIAARVLVNRGMSNDEDIDEYLNAEEKEL-ARPELM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A   + + I   EKI I GDYDVDG  S  ++  F      + +  IP R+ DGY
Sbjct: 60  RDLTNACEILNRKINEGEKIRIIGDYDVDGVCSTFVLYDFFRSMGADISYVIPHRVQDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAYA 193
           G N  ++ K   +G   I+T D G  +Y+ +++A   G+ V++ DHH +   ++  PA  
Sbjct: 120 GINIDIVNKAKEDGIDTIVTCDNGIAAYEQVKHAKEIGLTVLITDHHDIPVNNDLPPADT 179

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           + NP R D       LC AGV + ++         ++           L   ALAT+CDV
Sbjct: 180 VTNPKREDCNYPFKGLCGAGVAYQLINHYAEKYGNNSAKLKTEIKNKYLAFTALATICDV 239

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRI 311
           + LIG NR  V KGL       N GL+AL+E         IT  + G++IGP INA GR+
Sbjct: 240 MELIGENRIIVKKGLKAIYNTENVGLRALLEVSGLVNKDEITVYHCGFIIGPMINASGRL 299

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +    +L +  D +     A +L  LN  R+ +    L +A      +  +     V+
Sbjct: 300 ESAVKAIKLFLESDRERALSEANELQGLNNERKDITEQSLIRATEIA--ESSEYLNDKVL 357

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+     H  I G++A R+KEKF +P+   ++ E G   GSGRSIE +++ + +S   E 
Sbjct: 358 VILVPDCHESIAGIVAGRIKEKFYKPTLIFTYAERGI-KGSGRSIEDYNMFEEISKCSE- 415

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-----VPALITTPVFKIDGVLNAS 486
               K GGH MAAG +++        + F K    +     +      P    D  L   
Sbjct: 416 -CFSKFGGHPMAAGFSLKGETTEEQIEVFNKLRKMLNENTTLTEEELKPKIFFDMELPPY 474

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQD-SETLQA 543
            V   LI+ L    PYG GN  P FA  N  +Q+ RV+   +  +++        +   A
Sbjct: 475 YVTEELIEELLRFEPYGTGNKVPTFARRNMYIQTYRVIGKNNNAIKLELTDGGEGQVHNA 534

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F    +   E+L+    K++ +     +N +RG K  QL++ +  
Sbjct: 535 IWFG-DASVFEEYLLNKEEKKLDIIYSPQINEYRGFKNIQLKIEEYR 580


>gi|332994408|gb|AEF04463.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas sp. SN2]
          Length = 573

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/562 (30%), Positives = 277/562 (49%), Gaps = 19/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ R+   RNV        L   ++ L      L     AA  +   I   + ++I 
Sbjct: 19  LHPVIDRIYRGRNV---QDISELENGLKGLTH-FNELKGMAGAASILADTIEQDKTLVIV 74

Query: 99  GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S+A+ +R L        +  +P+R   GYG +  +++    +GA +IITVD
Sbjct: 75  GDFDADGATSIAVCIRSLHMMGFKKVDYLVPNRFDFGYGLSVPIVDIAKQQGADVIITVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G    D + +A   GI+VIV DHH    +  PA A+VNPN+        +L   GV F 
Sbjct: 135 NGIACIDGVTHAKALGIEVIVTDHHLPGDDLPPADAIVNPNQPGCTFPSKNLAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +++ +   L+Q N          +L SLLD+VA+ TV DVV L   NR  V +GL   R 
Sbjct: 195 IMLALKTELQQRNWFTKKNLPAPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIRA 254

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +  PG+KAL+E  N   + +T+ +LG++IGP +NA GR+ + + G   L+ DD+ +  M
Sbjct: 255 GKCRPGIKALVEVANRDCAHLTSTDLGFVIGPRLNAAGRLDDMSQGIACLLEDDTMQARM 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQ-CDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN+ RR +E+ M  QAE  +      +    + +VV    +H G++G++A RL
Sbjct: 315 IASELDALNRERREIETGMKAQAEQVLEKMSLAEGDIPAALVVYQADFHQGVIGIVAGRL 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KEK+ +P  A + +++    GS RSI G  I  ++        G++ K GGHAMAAGL++
Sbjct: 375 KEKYLKPVIAFAHQDEATIKGSARSIPGVHIRDVLDEVNTRFPGVIDKFGGHAMAAGLSL 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
              N       F   A   +  L    V   DG L    +++    +L  AGP+G G  +
Sbjct: 435 PVANLAAFQKAFIDIAKQHMDKLDGNQVLLSDGSLTGQELSLPFAHLLRQAGPFGQGFES 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           P+F     ++   R+V   HL++         + AIAF +           +  K++ + 
Sbjct: 495 PLFDGE-FQVVQQRLVGEKHLKLVLREPSVGEVDAIAFNIDIKAWP----NAMVKQVRIA 549

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
             L VN +RG +  QL +    
Sbjct: 550 YRLDVNVFRGQESVQLIIEQLE 571


>gi|188585913|ref|YP_001917458.1| single-stranded-DNA-specific exonuclease RecJ [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350600|gb|ACB84870.1| single-stranded-DNA-specific exonuclease RecJ [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 831

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/589 (29%), Positives = 279/589 (47%), Gaps = 22/589 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           +W      +    A  +     I  ++A++LVNR V+  +   DFLNPS   L   P +L
Sbjct: 7   KWNIKT--DYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLH-SPWLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +A   I + I ++E I+I+GDYD DG  + AL+  +LS    N   YIPDR  DGY
Sbjct: 64  PDMKQAVELIDKIIKSNEPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFKDGY 123

Query: 136 GPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           G   + +          +LIITVDCG  S   ++     G  VIV DHH+   +   A+A
Sbjct: 124 GLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPSAHA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP          +L   GV F ++  +   +  +     N  L   LDLV + T+ D+
Sbjct: 184 VINPKIHTTNYPFKYLAGVGVAFKLVSALAEQI--ETHYDFNELLKQYLDLVTIGTIADL 241

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312
           VPL   NR +V KGL     +  PG+KAL++ + +    + A  +G++IGP INA GR+ 
Sbjct: 242 VPLTSENRIFVSKGLQYIDER-RPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLA 300

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            ++   +LL          LA KLD  N+ R+ +E  + ++A+  +      + +  V+V
Sbjct: 301 SADEAVQLLTESSESAARELAKKLDKENRERQKVEQKITKEADEMINRNNL-LARGPVLV 359

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V  + WH G+VG++A+RL EK+ RP   ++  +E GK  GS RSI GF++ + +     +
Sbjct: 360 VWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALKSC--D 417

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+K GGH +AAGL +E  +           A   +      P   ID  +   A+   
Sbjct: 418 NLLIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRE 477

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
           L + +    P+G GNP PV    + ++ S R V     HLQ+ F++     L  I F+  
Sbjct: 478 LAEEISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMG-VLDGIWFK-- 534

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLRVLDASPVEGH 595
           G    +      G  +       ++ ++         L++ D    +  
Sbjct: 535 GAEKAKEKNIKTGMPVQAAFIPKISTFKSKSSKGHLSLQLCDMQLPDNQ 583


>gi|325690515|gb|EGD32518.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK115]
          Length = 739

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLDPAAASLLYQRGVQTEEALQEFLEPSLNQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  HDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G   ++A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGFEAIDLAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    +D  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQED-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|193213322|ref|YP_001999275.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobaculum parvum
           NCIB 8327]
 gi|193086799|gb|ACF12075.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobaculum parvum
           NCIB 8327]
          Length = 571

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/581 (27%), Positives = 267/581 (45%), Gaps = 18/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           +RW  L           + +   +   +A  L NR +S  + A+ F  PS+  ++  P +
Sbjct: 4   YRWTRL--DPEPTLVQGLAESINVSMPIAAALCNRGISSFEEARQFFRPSLDDVL-SPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                 A  R+++A+   E IMI+GDYDVDG    A++  FLS        YI DR  +G
Sbjct: 61  FNQMKLAVTRVLKAVSGGEPIMIYGDYDVDGTTGTAMLSLFLSEMGARVCHYINDRFSEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + ++  + +G +L+ITVDCG  + D +Q   ++GIDVIV DHH+ +     A+A+
Sbjct: 121 YGLSEAGLDYAVEQGVRLVITVDCGIRALDEVQACADRGIDVIVCDHHEAEELPA-AHAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P           LC  GV   ++  I                +  LDLVA+AT  D+V
Sbjct: 180 LDPKVEGCSYPFRELCGCGVALKLVQAIVETQG-----WPRSRWVQYLDLVAIATAADLV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            L   NR Y+ +GL + RR     LKA++  + +        N+ + I P INA GR+G 
Sbjct: 235 SLTDENRVYLREGLELMRRSPRESLKAMLAFMKVKPVEFDLMNITFGIAPRINAAGRMGS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             +  R L++ +  E    A  L+ LN +RR +++ +  +AE  V   C      S IV+
Sbjct: 295 VEVAMRWLLAREPDEAHRCATALEELNASRREIDAEITTKAETMVAGHCASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A++L +K   P+  +    +G   GS RS++  +I +++    E   
Sbjct: 353 YDEAWHLGVLGIVASKLLDKHLLPTAVMG-GANGLIKGSVRSVDNLNIHEVLQHCREH-- 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG T+         + F +    ++P         ID  L+   +    +
Sbjct: 410 LEQFGGHHQAAGFTLRPDRLAAFRERFDEVCREMLPVEKRQKELLIDAELSLDDITPNFL 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++LE   P+G  N  P+F     +L    +++   H++   + + S   + I F      
Sbjct: 470 NVLEQFSPFGFANREPLFVTAPCRLVGKPKLLKERHVKFMVQGERSSRFEVIGFDRPDI- 528

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +         + +        W G +  QLR+ D +  E
Sbjct: 529 YKDLERIGNVAPLQLVCIPEKKQWNGREYVQLRLKDMAFSE 569


>gi|300070213|gb|ADJ59613.1| single strand DNA-specific exonuclease [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 742

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/579 (28%), Positives = 273/579 (47%), Gaps = 34/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           + W            L I++KH + ++ +RVL  R +  +   + FL P++  L  DP +
Sbjct: 6   YDWKLDET-VLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA +RI+ AI   E I+I+GDYD DG  + ++M   L      A +Y+P+R  DG
Sbjct: 64  LHDMEKATQRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN  + + +  NE   LIITVD G    +A+ +A   G+DVI+ DHH +  +   AYA
Sbjct: 124 YGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQMPNAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   +      +L   GV F V   +                  +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPESQYPFKYLAGVGVAFKVACALLEYAP-----------REMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V  +    GL+ L++   +    +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D  E   +A  +D  N  R+ +   +  +A A +  +        V +
Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDE-------PVQI 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A RL E+  +P   ++ EE+G   GS RSI+ FDI    +      
Sbjct: 346 LYHKDWHKGVLGIVAGRLLEQIHKPVIMLA-EEEGILRGSARSIDSFDI--FKALNAHRE 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAG+T+   N   +      F  +    L      ++    +   +++A 
Sbjct: 403 LFIAFGGHKQAAGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLDEISLAT 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           I+ L    P+G  NP P F   ++K+   R +     HL++  + ++ + + A+ F+   
Sbjct: 463 INNLAKLAPFGMDNPKPRFLVEDYKVIRSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L     +++     +   L  N W G+   QL + DA
Sbjct: 522 EELEFEQAETK-----LVVTLSSNSWNGNTSLQLMIEDA 555


>gi|157374034|ref|YP_001472634.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sediminis
           HAW-EB3]
 gi|157316408|gb|ABV35506.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sediminis
           HAW-EB3]
          Length = 574

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/563 (30%), Positives = 278/563 (49%), Gaps = 21/563 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ ++  +R  S +  +  L   +R     P  +    + A  I  AI     I+I 
Sbjct: 20  LSPLLKQIYASRGSSAEDCELTLARLLR-----PDTMKGLAEGAAIIADAIKAQRSILIM 74

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S ++ M  L+       +  IP+R   GYG +P ++    ++GA+L+ITVD
Sbjct: 75  GDFDADGATSTSVCMLALTMMGATKVDYLIPNRFDYGYGLSPEIVAVAHSKGAELLITVD 134

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S + ++ A   G+ V++ DHH        A A+VNPN++D       +   GV F 
Sbjct: 135 NGISSIEGVEAAKALGMQVVITDHHLPGKTVPDADAIVNPNQVDCNFASKSIAGVGVAFY 194

Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   L + N          +L  LLD+VAL TV DVV L   NR  V  GL   R 
Sbjct: 195 LMSALRAELGKRNWYQEQGLVVPNLGQLLDIVALGTVADVVALDSNNRILVEAGLQRVRA 254

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ DD      
Sbjct: 255 GRCRAGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMTARR 314

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEA-KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           +A +LD LN  RR +E+ M ++A       + ++ +    I +  + WH G++G+LA+R+
Sbjct: 315 MAAELDGLNAERRDLEADMQQEALKSLASVELNEEELPWGIALFQEDWHQGVIGILASRI 374

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           K+++ RP  A +   +G+  GS RSI+G  +  ++        G+++K GGHAMAAGL++
Sbjct: 375 KDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINTRHPGMILKFGGHAMAAGLSL 434

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  +F      + +    ++   + T     DG L    + + +   L +AGP+G   P 
Sbjct: 435 KAKDFPAFEQAYDQSVRELLKPELLTGELVTDGELTPDEMKLDIAWELRNAGPWGQEFPE 494

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     K+   R+V   HL++  E++  +T L AIAF V  T   +  +    K   V
Sbjct: 495 PLFDGY-FKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNVDLTTWPDATI----KHARV 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590
              L VN +RG++  QL V    
Sbjct: 550 VYKLDVNEFRGNQSLQLMVDQIE 572


>gi|257092663|ref|YP_003166304.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045187|gb|ACV34375.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 573

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/582 (30%), Positives = 277/582 (47%), Gaps = 28/582 (4%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
           LL +    R     ++  +  ++AR+   R +    A+  L+  +  L+  P  LT   +
Sbjct: 4   LLSRPVSQRVQWQLEQQGLHPLLARLYAARGIR---ARSELDYDLASLLA-PASLTHAAE 59

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           AA  +  AI  + +I+I  DYD DGA + A+ MR L       +  +P+R   GYG +P 
Sbjct: 60  AAVLLADAIAANARILIVADYDCDGATACAVGMRALRAFGACVDYLVPNRFTYGYGLSPD 119

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
           +++        LI+TVD G  S D +  A   GI  ++ DHH    E   A  +VNPN  
Sbjct: 120 IVDLAATRQPNLIVTVDNGIASVDGVARARQLGIATLITDHHLPGDELPAADCIVNPNLE 179

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-----PLNFDLLSLLDLVALATVCDVVP 255
                  HL   GV+F V++ +   LR  N            L +LLDLVAL TV DVV 
Sbjct: 180 HCDFPSKHLAGVGVIFYVMLALRAELRARNWFAESSGRREPRLATLLDLVALGTVADVVR 239

Query: 256 LIGLNRAYVVKGLMVARRQGNPGL--KALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R                   +  +A +LG+MIGP +NA GR+ +
Sbjct: 240 LDHNNRVLVSQGLQRIRAGRLTPGLRAIFRAAGRNPAQASAFDLGFMIGPRVNAAGRLAD 299

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV- 372
            +LG   L++DD      +A +LD LN+ RR +ES M EQA  ++      +  +     
Sbjct: 300 MSLGIECLVTDDEGRALNIAQQLDALNRQRREIESGMQEQALIQLTAATAALDASPAAAG 359

Query: 373 --VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA-- 428
             +    WH G+VG++AAR+KEK  RP+FA +  E G+  GSGRSI G  +   +     
Sbjct: 360 VALFDTDWHQGVVGIVAARIKEKLHRPAFAFARGEGGEIKGSGRSIAGLHLRDALDLVAK 419

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
              G+L++ GGHAMAAG+T+  ++F R  + F +    ++     T   + DG L +  +
Sbjct: 420 RAPGLLLRFGGHAMAAGVTLREIDFARFQELFAQVVDELLAPADRTRTLETDGSLESGYL 479

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           +IA   +LE A  +G G P P+F      ++S R++   HL++    + ++ L AI F  
Sbjct: 480 SIATARLLE-AEVWGQGFPAPLFEDEFV-VESQRILKDKHLKLRLR-KGAQRLDAIQFNF 536

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     Q+ G  M     L +N + G +  QL +    
Sbjct: 537 D---------QAPGATMRAAYRLAINDFNGVQTPQLMIEHIE 569


>gi|332187561|ref|ZP_08389298.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas sp.
           S17]
 gi|332012490|gb|EGI54558.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas sp.
           S17]
          Length = 584

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/598 (39%), Positives = 330/598 (55%), Gaps = 19/598 (3%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           M D   LG+  SI G  W            L         D+V ++L+ R    +  +D 
Sbjct: 1   MTD--VLGIAQSILGQPWRWRALSADARDGLV------HDDLVTQLLLARGCPPEAVEDH 52

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
             PSIR  MPDP I  D D+AA R+  A+   E + IFGDYDVDGA S ALM+R L    
Sbjct: 53  KQPSIRSFMPDPSIFRDMDRAADRLADAVIAGEPVAIFGDYDVDGATSSALMVRLLRSLG 112

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
           ++   YIPDR+ +GYGP  + + +   EGA LI+TVDCG+ +++ L  A   GI+V+V+D
Sbjct: 113 LSPRAYIPDRLAEGYGPTEAALLRLQAEGANLIVTVDCGAQAFEPLAAAHAAGIEVMVVD 172

Query: 181 HHQVKSEEIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNF 236
           HH+  +    A+A+VNPNRLD+   +  GHL A GV FL+   + R LRQ          
Sbjct: 173 HHKCATLLPLAHAVVNPNRLDEDEGAAHGHLAAVGVCFLLGAALIRTLRQRGFFADRPEP 232

Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN 296
            LL LLDLVAL TV DV PL GLNRA+V +GL V  ++ N GL +L E   ++   T  +
Sbjct: 233 RLLDLLDLVALGTVADVAPLRGLNRAFVAQGLKVMAQRRNIGLASLTEAARLTRAPTCSD 292

Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356
           LG+ +GP INAGGR+G ++LG RLL ++D  E   +A +L+  N  RR +E+ +   AE 
Sbjct: 293 LGFALGPRINAGGRVGRADLGVRLLTTEDPAEARAIAEELNHFNDERRAIEAGVQATAET 352

Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI 416
            V           V +V G  WHPG++G++A RLKEK  RP+  I+ +E+G G GSGRSI
Sbjct: 353 IVDR------GRQVALVSGTGWHPGVIGIVAGRLKEKLDRPAIVIAIDENGIGKGSGRSI 406

Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
            G D+G  +  A E G+L+ GGGHAMAAGLTV       L DF +      V        
Sbjct: 407 TGVDLGAAILAAKEHGLLIAGGGHAMAAGLTVAANRISELADFLEDRLAQAVTRASAGRA 466

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536
             +D VL    VN AL+  +E+ GPYG G P P  A    ++    +V   H++      
Sbjct: 467 LLVDAVLAPGGVNPALVGSMEAGGPYGMGWPAPRIAAGPFRVIRADLVGTNHVRAIIAGA 526

Query: 537 DSETLQAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           D  +L+A+AFR   TPLG+ L+     +R+ + G   V+ W G    +L + DA+  +
Sbjct: 527 DGRSLKAMAFRHAETPLGQALLGAGSTRRLWLAGRAKVDDWSGRDVAELHIEDAAWAD 584


>gi|170760035|ref|YP_001788080.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407024|gb|ACA55435.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 593

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 179/605 (29%), Positives = 294/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L   NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKSENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYICKFGGHPMAAGLTIEERNVDKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVNEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|322807073|emb|CBZ04647.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum H04402 065]
          Length = 593

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYTI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPTIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LALKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|116511427|ref|YP_808643.1| exonuclease RecJ [Lactococcus lactis subsp. cremoris SK11]
 gi|116107081|gb|ABJ72221.1| exonuclease RecJ [Lactococcus lactis subsp. cremoris SK11]
          Length = 742

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/579 (28%), Positives = 273/579 (47%), Gaps = 34/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           + W            L I++KH + ++ +RVL  R +  +   + FL P++  L  DP +
Sbjct: 6   YDWKLDET-VLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA +RI+ AI   E I+I+GDYD DG  + ++M   L      A +Y+P+R  DG
Sbjct: 64  LHDMEKATQRILSAIEQGEHILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN  + + +  NE   LIITVD G    +A+ +A   G+DVI+ DHH +  +   AYA
Sbjct: 124 YGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQLPNAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   +      +L   GV F V   +                  +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPESQYPFKYLAGVGVAFKVACALLEYAP-----------REMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V  +    GL+ L++   +    +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D  E   +A  +D  N  R+ +   +  +A A +  +        V +
Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDE-------PVQI 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A RL E+  +P   ++ EE+G   GS RSI+ FDI    +      
Sbjct: 346 LYHKDWHKGVLGIVAGRLLEQIHKPVIMLA-EEEGILRGSARSIDSFDI--FKALNAHRE 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  A G+T+   N   +      F  +    L      ++    + + +++A 
Sbjct: 403 LFIAFGGHKQAVGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLAEISLAT 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           I+ L    P+G  NP P F   ++K+   R +     HL++  + ++ + + A+ F+   
Sbjct: 463 INNLAKLAPFGMDNPKPRFLVEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L     +++     +   L  N W G+   QL + DA
Sbjct: 522 EELEFEQAETK-----LVVTLSSNSWNGNTSLQLMIEDA 555


>gi|329890045|ref|ZP_08268388.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas
           diminuta ATCC 11568]
 gi|328845346|gb|EGF94910.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas
           diminuta ATCC 11568]
          Length = 570

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/560 (37%), Positives = 310/560 (55%), Gaps = 5/560 (0%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           Q   + + +AR L +R V+ +   DFL P+++ L P+P    D D AA  IV A+     
Sbjct: 7   QALGLDEPLARALASRGVAAEQGADFLKPTLKALFPNPSSFMDMDAAAAAIVDALQAQAS 66

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           I +F DYDVDGA+S AL++R+      +  +Y+PDR+ +GYGP+    +     GA L+I
Sbjct: 67  IHVFADYDVDGASSAALLVRWFRTLGADLPIYVPDRLTEGYGPSARAFDTLKARGADLVI 126

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVDCG+ + +A+ +A   G+ V+VIDHH ++ E     A+VNPNR    SGQG+L AAGV
Sbjct: 127 TVDCGAAANEAVAHAAAIGLKVVVIDHHMMREEPPACLAVVNPNRPGCGSGQGNLAAAGV 186

Query: 215 VFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           VF++L  + R  R           D+   LDL A+  +CDV  L G NRA    GL V  
Sbjct: 187 VFVLLAALNREARGRGLFEGKAEPDIRQWLDLAAMGAICDVTGLTGFNRALTSLGLGVMS 246

Query: 273 RQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
              NPGL+AL+             + G+++GP INAGGRIG+S+LG+RLL +DD  E  M
Sbjct: 247 HWRNPGLRALLAAAGAEPGPAKTNHAGFILGPRINAGGRIGKSDLGARLLSTDDPDEARM 306

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           LA +LD LN  RR +E+ + EQA  +V         ++V+VV G+ WHPG+VG++A RL+
Sbjct: 307 LAQELDALNLARREVEAEVTEQAVRRVEATGAHADDSAVVVVSGEDWHPGVVGIVAGRLR 366

Query: 392 EKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
           E++ +P   I  +  +G G GSGRS  G ++G+ V  A  E +L+ GGGHAMAAGLTV  
Sbjct: 367 ERWRKPVIVIGVDAVNGVGKGSGRSQPGMNLGRAVQAAWNESLLIAGGGHAMAAGLTVAA 426

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
                L  F  +         +     ++D +++  A    L +  E   PYG  NP P+
Sbjct: 427 DRVDELRAFLNERLSTERVEAVAQDWVEVDALIDPRAATRDLFEAFEQLAPYGPANPEPL 486

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           FA    + +    +N  H++      D  +++AIA+R    P G+ L+  +G  ++V G 
Sbjct: 487 FALEGVQAREPVAMNGGHVRCRLVGPDGASVRAIAWRCADLPTGKALLAGQGG-VNVVGR 545

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L  + W G +  Q  + D +
Sbjct: 546 LRADDWNGRRGVQFEIEDVA 565


>gi|325694707|gb|EGD36613.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK150]
          Length = 740

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N     L   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVEFLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDNH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELADILTAYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD    + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-AAFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|319938922|ref|ZP_08013286.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           anginosus 1_2_62CV]
 gi|319811972|gb|EFW08238.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           anginosus 1_2_62CV]
          Length = 744

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W         +      +K  +   VA ++  R +  + A +DFL PS+  L  DP
Sbjct: 4   SKYDWQIATNFSDESFIKK-AKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI QAI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YELHDMDKAVTRIRQAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LI+TVD G   ++A++ A + G+DVIV DHH +      A
Sbjct: 122 DGYGPNASVYKYFIENQGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEVLPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P   +      HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIIHPEHPEADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL V +     GL+ L +      + +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRILVKYGLSVLKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N+ R+ +   + ++A+  V           V
Sbjct: 291 LDDPNPAIELLTGFDEEEARDIALMINQKNEERKEIVQKIYDEAKTMV------DPDNPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  E+    GS RSIE  DI    +    
Sbjct: 345 QVLASEGWNPGVLGIVAGRLLEELHQPVIVLN-IENDLAKGSARSIEAVDI--FEALDPH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L      +  +    L T     +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNKLDLSTKNDLFLDEELSLPDLTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  PVF   + K+++ R +     HL++     D    + +AF +
Sbjct: 462 ETLKNFEKLAPFGMDNKKPVFYLKDFKVENARTMGAGNTHLKLKISQAD-AVFEVVAFGL 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S+ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GDL----ATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVNGIQLFNIR 568


>gi|219669629|ref|YP_002460064.1| single-stranded-DNA-specific exonuclease RecJ [Desulfitobacterium
           hafniense DCB-2]
 gi|219539889|gb|ACL21628.1| single-stranded-DNA-specific exonuclease RecJ [Desulfitobacterium
           hafniense DCB-2]
          Length = 801

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/584 (30%), Positives = 280/584 (47%), Gaps = 24/584 (4%)

Query: 14  SGFRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPD 71
           +   W       G   + + + Q+  I  +VA +L  R +   +   +FL PS+  L   
Sbjct: 2   TKRIWTKPQPLPGFKDSRSPLPQRLGITPVVADILRQRGIEAEEEIMEFLRPSLLNL-NS 60

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P    +  +A  R+  A    EKI+I+GDYDVDG  S AL+ + L+     A  YIP R+
Sbjct: 61  PFAFREMARAIERLELARAQEEKILIYGDYDVDGVTSTALLYKVLTDLGFKAVAYIPSRM 120

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +   + K +    +++ITVDCG T+ + ++YA +QGID+I+ DHH+       A
Sbjct: 121 DEGYGLHKDAITKALQANVKVMITVDCGITAVEEVEYARSQGIDIILTDHHEPPDSLPQA 180

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA++NP   D       L   GV F +   +   L +       + +L +LDL AL T+ 
Sbjct: 181 YAILNPKVKDSGYPFRDLAGVGVAFKLAQALLERLEEGKSGA--YAVLEILDLAALGTIA 238

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           D+VPL   NR  V  GL       + GL+ L+E       P+ A  + +M+ P INA GR
Sbjct: 239 DLVPLTHENRIIVAYGLRQMENTIHLGLRTLLEECGLWGKPLKAGQIAFMVAPRINAAGR 298

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  +  G  LL++   +    LA  L   N  R+  E  +  +A   +           V
Sbjct: 299 MDSARAGLELLLTGHEERAVELARFLSRENTLRQDTEKEIFAEAVEILEKNPM----PRV 354

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           IV+ G  WH G++G++A+RL E++ RP F I+ EE+  G GS R I G+ +  +     +
Sbjct: 355 IVLSGKNWHHGVIGIVASRLVERYYRPVFLIAEEEE-IGKGSARGIGGYHV--LDELKAQ 411

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L K GGH+ AAG +++      L +   + A   +P  +     ++D  +    ++ 
Sbjct: 412 AELLEKFGGHSQAAGFSLKLETIPLLREALNQ-AALHLPEEMFYERIRVDQCVPLEVLDA 470

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
           +L+  LE   P+G GNP+PV A  ++ L     V     HL+  F  Q     + IAFR 
Sbjct: 471 SLLHDLEHLAPFGFGNPSPVLAGRDYPLYMADTVGKDHAHLKCMFGPQG--EWEGIAFR- 527

Query: 549 YGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                GE L    G   + V   L  N +RG++  QL + D  P
Sbjct: 528 ----KGEELANILGSATVDVAFGLDWNTFRGAQSIQLMIKDIQP 567


>gi|322385654|ref|ZP_08059298.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           cristatus ATCC 51100]
 gi|321270392|gb|EFX53308.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           cristatus ATCC 51100]
          Length = 739

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W         N      +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQFATNFTDENFLKK-AKKAGLEPTAASLLYQRGVQNEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DIVSLTGENRILVKYGLSVLKNTQRIGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTSYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    +D  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQED-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|327470781|gb|EGF16237.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK330]
          Length = 740

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL P +  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPGLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEAEKLAELADILTVYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVTLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|168180830|ref|ZP_02615494.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum NCTC 2916]
 gi|226950176|ref|YP_002805267.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668251|gb|EDT80230.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum NCTC 2916]
 gi|226843610|gb|ACO86276.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A2 str. Kyoto]
          Length = 593

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYAI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LALKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|325695978|gb|EGD37869.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK160]
          Length = 740

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 273/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W                +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQFATNFTDEKFIKK-AKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELYLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QDS T + +AF  
Sbjct: 462 DTLKSFERLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQDS-TFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|29376242|ref|NP_815396.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis V583]
 gi|29343705|gb|AAO81466.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis V583]
          Length = 770

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+  + A + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A             A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLF------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569


>gi|327461206|gb|EGF07539.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK1057]
          Length = 739

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 277/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVDRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  + ++        V
Sbjct: 291 LDDPNPAIELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDSK------RPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELADILTAYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            G         ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GGL----VTEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|304319922|ref|YP_003853565.1| single-stranded-DNA-specific exonuclease RecJ [Parvularcula
           bermudensis HTCC2503]
 gi|303298825|gb|ADM08424.1| single-stranded-DNA-specific exonuclease RecJ [Parvularcula
           bermudensis HTCC2503]
          Length = 610

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 233/601 (38%), Positives = 329/601 (54%), Gaps = 12/601 (1%)

Query: 1   MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60
           + + AFLGV  S++G              A  I Q+  I  +++ V+  R V+ D A  +
Sbjct: 12  LVETAFLGVTRSVTGR--RWRRRAFDARAAETIAQRLDIDPLLSEVVAARQVTPDLAAAW 69

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L+P +R  +PDP  L   D AA R+  AI   E I +FGD+DVDG  S A+M R+L    
Sbjct: 70  LSPRLRDDLPDPSCLKGMDTAAARLADAIIAGETIGLFGDFDVDGTTSSAIMARYLRAVG 129

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
               +++P+R  +GYGPN         +GA LI+T+DCG+T++  L  A  +G++VIV+D
Sbjct: 130 AAPLIHLPNRQSEGYGPNLPAFLAMKEKGASLIVTLDCGATAHGVLAAAAEEGLEVIVVD 189

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDL 238
           HH +      A A+VNPNR D LSG   L A GV FL LV + R LR+          DL
Sbjct: 190 HHLMSLPAPTAVAVVNPNRPDCLSGLTMLSAGGVTFLTLVALNRTLRERGFFADRPPPDL 249

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-----QGNPGLKALIERVNISSPIT 293
           L LLDLVAL+ VCDV+PL GL R    +GL +         GN G++AL        P  
Sbjct: 250 LRLLDLVALSLVCDVMPLKGLGRTLTRQGLALLGHIEGAGSGNQGIRALAAEAGAKGPAA 309

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
           A + GY IGP INA GRIG +     LL +DD  +   LA +L  LN  R+ +E+A+LE+
Sbjct: 310 AAHFGYAIGPRINAAGRIGHAMTAFDLLTTDDPVKAAALAAELSDLNGIRQGVEAAVLEE 369

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           A  K      D      +VV G+ WHPG++G++A RLKE+FGRP+  IS   + +G GSG
Sbjct: 370 A-CKAAEDQGDRDAPLPLVVAGEGWHPGVIGIVAGRLKERFGRPALVISLAGE-EGKGSG 427

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RS+ G D+G  +  AVE G+L+ GGGH MAAGLTV R   G L  F        + A   
Sbjct: 428 RSLPGVDLGAAIGAAVEAGLLLGGGGHPMAAGLTVRRDGLGELRAFLDARLGEAIAAAQA 487

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
             V  +DG++  + +  +L D L  A P+G GNP P FA  +  ++ +RV+   H+ +T 
Sbjct: 488 DRVLSLDGIVAPTGITRSLHDGLLQAAPFGNGNPEPRFALADISVRELRVLKDKHMAVTL 547

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSR-GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                   + IAF   G PLG+ L   R G+R+H+ G +  + +RG    Q+ + D + V
Sbjct: 548 ADDTGGRARGIAFGCVGQPLGDLLEAGRAGQRLHLAGRIKPDEYRGGNAAQIHLEDGAVV 607

Query: 593 E 593
           +
Sbjct: 608 K 608


>gi|224824113|ref|ZP_03697221.1| single-stranded-DNA-specific exonuclease RecJ [Lutiella nitroferrum
           2002]
 gi|224603532|gb|EEG09707.1| single-stranded-DNA-specific exonuclease RecJ [Lutiella nitroferrum
           2002]
          Length = 571

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/583 (29%), Positives = 269/583 (46%), Gaps = 28/583 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
            +       + AL   Q   I  +++R+   R ++       L+ S++ L+P    L + 
Sbjct: 5   QTRSVPPDHHAAL---QAQGISPLMSRLFAARGITS---HAELDCSLKALLP-FQQLKNI 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           D  ARR+  AI   E++++  DYD DGA + ++ M+ L+      +  +P+R   GYG  
Sbjct: 58  DAMARRLADAIARRERLLVVADYDADGATACSVAMKGLAAHGAIVDFIVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        +I+TVD G  S   ++ A  +GI+V+V DHH      +P   +VNPN
Sbjct: 118 PEIVELAAQHRPDIIVTVDNGIASVAGVEAAKARGIEVLVTDHHLPGDT-LPDALIVNPN 176

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPL 256
           +        +L   GV+F VL+ +   +R           +L  LLD VAL TV DVV L
Sbjct: 177 QPGCPFPSKNLAGVGVMFYVLMALRAEMRARGAFGDKPEPNLGELLDYVALGTVADVVRL 236

Query: 257 IGLNRAYVVKGLMVARRQGN-PGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGES 314
              NR  V  GL   R     PG+ AL              +LG+ +GP +NA GR+ + 
Sbjct: 237 DQNNRILVENGLRRMRAGRMTPGIAALFRVAGRMVHKANTFDLGFTLGPRLNAAGRLDDM 296

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +LG   L++    +   LA +LD LN+ RR +E  M ++A    +    D  +   + + 
Sbjct: 297 SLGIACLLAATESQAMKLAQELDALNRERRQIEHGMQDEAL--AVLASIDPAERYTLALY 354

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432
            D WH G+VG++A+RLKE+F RPS   +  ++G+  GSGRSI GF +   +        G
Sbjct: 355 RDDWHQGVVGIVASRLKERFHRPSIVFAPGDEGEIKGSGRSIPGFHLRDALDLVSKRHPG 414

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L K GGHAMAAGLT+  V+F   C  F+  A   +     T   + DG L    +++  
Sbjct: 415 LLRKFGGHAMAAGLTIAEVDFPAFCQAFETVAREWMSEQQLTRTLETDGSLGPRELHLGF 474

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            + L +A  +G G P P F      +   R+V   HL++    +D +   A+ F      
Sbjct: 475 AEEL-AAQVWGQGFPPPTFCDR-FHVMQQRIVGDKHLKLRL-LKDGQEFDAMRFNQVDW- 530

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                       +     +  N W+  K  Q+ +       G 
Sbjct: 531 --------LPDEIEAVYQVVANEWQSRKELQIYLDHWQLPAGQ 565


>gi|125623467|ref|YP_001031950.1| single strand DNA-specific exonuclease [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492275|emb|CAL97206.1| single strand DNA-specific exonuclease [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 742

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 34/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           + W            L I++KH + ++ +RVL  R +  +   + FL P++  L  DP +
Sbjct: 6   YDWKLDET-VLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA +RI+ AI   E I+I+GDYD DG  + ++M   L      A +Y+P+R  DG
Sbjct: 64  LHDMEKATQRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN  + + +  NE   LIITVD G    +A+ +A   G+DVI+ DHH +  +   AYA
Sbjct: 124 YGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQMPNAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   +      +L   GV F V   +                  +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPESQYPFKYLAGVGVAFKVACALLEYAP-----------REMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V  +    GL+ L+    +    +T E +G+ I P +NA GR+ 
Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMIYAGVDFDKVTEETVGFQIAPRLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D  E   +A  +D  N  R+ +   +  +A A +  +        V +
Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDE-------PVQI 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A RL E+  +P   ++ EE+G   GS RSI+ FDI    +      
Sbjct: 346 LYHKDWHKGVLGIVAGRLLEQIHKPVIMLA-EEEGILRGSARSIDSFDI--FKALNAHRE 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAG+T+   N   +      F  +    L      ++    +   +++A 
Sbjct: 403 LFIAFGGHKQAAGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLDEISLAT 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
           I+ L    P+G  NP P F   ++K+   R +     HL++  + ++ + + A+ F+   
Sbjct: 463 INNLAKLAPFGMDNPKPRFLVEDYKVIRSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             L     +++     +   L  N W G+   QL + DA
Sbjct: 522 EELEFEQAETK-----LVVTLSSNSWNGNTSLQLMIEDA 555


>gi|55821231|ref|YP_139673.1| single strand DNA-specific exonuclease [Streptococcus thermophilus
           LMG 18311]
 gi|55737216|gb|AAV60858.1| single strand DNA-specific exonuclease [Streptococcus thermophilus
           LMG 18311]
          Length = 736

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + ++H +    A++   R +  + A +DFL   +  L  DP
Sbjct: 4   STYDWKINTKEPD-AGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G    +A+ YA  QG+DVIV DHH + S+   A
Sbjct: 122 DGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          +L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 YAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + +     GL+ L+    +  + I+ E + + + P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E + +A++++  N+ R+ +   + ++A + V           V
Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLARGSARSLESINI--FHALDDH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             I    GGHA AAG+T+   N  +L D    + ++            +D  L    +++
Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTGAKNTLNLDEELQLGELSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             I  LE   P+G  N  PVF   +  +   R +     HL+   + Q   +   +AF  
Sbjct: 462 DTIRSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFN- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            G  L EF        + +   L VN W G    QL + D        F  +
Sbjct: 520 KGHLLQEFQQAQG---LELAVTLSVNVWNGQTTLQLMLADVRVDNVQLFDFR 568


>gi|148380722|ref|YP_001255263.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A str. ATCC 3502]
 gi|153930815|ref|YP_001385006.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936524|ref|YP_001388476.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A str. Hall]
 gi|148290206|emb|CAL84325.1| single-stranded-DNA-specific exonuclease [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926859|gb|ABS32359.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932438|gb|ABS37937.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum A str. Hall]
          Length = 593

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             +W+    +  I     I  K  I + +  VLVNR + +++  KDFL PS+  L  +PL
Sbjct: 2   NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DK    I ++I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +
Sbjct: 58  LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188
           GYG     +E+   EG ++IIT D G  + + ++ A   G+ V++ DHH++   E     
Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177

Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                  A A++NP + D       LC AG+ F    L+Y  L  +           LL 
Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302
             A+ T+CDVV L G NR     GL       N GL+ALI+  +++   IT+ N+G++IG
Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  + L   L ++ D +  E LA +L  LN  R+ +    +E+    +  + 
Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYAI--EN 350

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++   V+V+  +  H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++ 
Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                   +  + K GGH MAAGLT+E  N  +L +   K  +  +      P  +ID  
Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNINKLREELNKNCN--LKDEDFIPKIRIDKR 465

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
           L    VN+ LID L+   P+G GN +P+ A  N K++ IR++      L++T   +D ++
Sbjct: 466 LALKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525

Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585
            + AIAF        +                    G ++ +  +  +N + G+   QLR
Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585

Query: 586 VLDAS 590
           ++D  
Sbjct: 586 IIDYR 590


>gi|55823143|ref|YP_141584.1| single strand DNA-specific exonuclease [Streptococcus thermophilus
           CNRZ1066]
 gi|55739128|gb|AAV62769.1| single strand DNA-specific exonuclease [Streptococcus thermophilus
           CNRZ1066]
          Length = 736

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + ++H +    A++   R +  + A +DFL   +  L  DP
Sbjct: 4   STYDWKINTKEPD-AGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI N E+I+++GDYD DG  S +++   L      A +Y+P+R  
Sbjct: 62  YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G    +A+ YA  QG+DVIV DHH + S+   A
Sbjct: 122 DGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          +L   GV F +   +   +              +LDLVA+ T+ 
Sbjct: 182 YAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIP-----------TEMLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + +     GL+ L+    +  + I+ E + + + P +NA GR
Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E + +A++++  N+ R+ +   + ++A + V           V
Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + WHPG++G++A R+ E+  +    ++  EDG   GS RS+E  +I    +    
Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLARGSARSLESINI--FHALDDH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             I    GGHA AAG+T+   N  +L D    + ++            +D  L    +++
Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTGAKNTLNLDEELQLGELSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             I  LE   P+G  N  PVF   +  +   R +     HL+   + Q   +   +AF  
Sbjct: 462 DTIRSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFN- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            G  L EF        + +   L VN W G    QL + D        F  +
Sbjct: 520 KGHLLQEFQQAQG---LELAVTLSVNVWNGQTTLQLMLADVRVDNVQLFDFR 568


>gi|282890833|ref|ZP_06299351.1| hypothetical protein pah_c028o005 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499261|gb|EFB41562.1| hypothetical protein pah_c028o005 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/577 (26%), Positives = 268/577 (46%), Gaps = 15/577 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           WV    QE    A  I ++  I  +VA+V V+R  +  +    FL   +  L  DP ++ 
Sbjct: 13  WVY--PQENAELAEKIVKEFRIHPVVAQVFVSRGFTTLEQIHTFLYGRLPDLC-DPFLMG 69

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +A +RI +AI   E I+I+GD DVDG    AL+  F  +   N   Y+ +R      
Sbjct: 70  GMPQAVQRIAKAIEQGEGILIYGDNDVDGMTGTALLTEFFRYIGANVFFYVSNRGAHRGS 129

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                +E  +    +L+ITVDCG T+   +       IDVI+ DHH    +     A +N
Sbjct: 130 LIVEALEYALKNECKLLITVDCGITAAGEIAKVVENNIDVIITDHHAPTDKIPNCIATLN 189

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVP 255
           P  +++      +   GV F +   +   L  + K+P    DL   LDLVAL T+ D+  
Sbjct: 190 PKLVNNSYPNQDITGVGVAFKLAHAVTEHLTAEGKLPPKKVDLKRYLDLVALGTISDMGT 249

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           L G NR  V  GL    ++   GL  L+   ++  + ++   +   + P +N+ GRI + 
Sbjct: 250 LQGENRILVSYGLHELAKRKRLGLSKLMSISDVDLNDLSTFTIASKVAPRLNSLGRIDDP 309

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
             G ++L+  ++   E +A++LD+ N  R+ +E AM    E+K+L   + + + ++ ++ 
Sbjct: 310 QKGVQMLLIRNAVAAEKMAIELDLNNIERQRIERAMAVDIESKLLMHPEILSKKAI-LMH 368

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WHPG++ +L+ R+ + + RP+  ++ ++     GS RSI  F +  ++       IL
Sbjct: 369 SENWHPGVIAILSTRIAKFYNRPTVIMACDDK-VAKGSLRSIPEFPLLPVLDQC--SDIL 425

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           V  GGH  AAG+T++  +       F + A   +         ++D  +N   +    ++
Sbjct: 426 VNYGGHDFAAGVTLKLEHIEEFKRRFIEAAEATLKDSDVLTKLRLDAKINFDELTFDFME 485

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553
            L+   PYG GNP PV      +    +V+  AHL++     +    L+ IA    G   
Sbjct: 486 SLKLLEPYGNGNPQPVLYCDAKQAFPPKVLKKAHLKLYLVQGEGDRMLEGIA---LGKAA 542

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              L++ +   + +     +N ++G    QL + D  
Sbjct: 543 QSPLLRKKDLVLRIAFTPQINNYQGQ-SIQLMIRDFQ 578


>gi|332360975|gb|EGJ38779.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK1056]
          Length = 739

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V + +  ++FL PS+  L  DP
Sbjct: 4   SKYDWHF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTKEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRIGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGH 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|322391382|ref|ZP_08064852.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           peroris ATCC 700780]
 gi|321145808|gb|EFX41199.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           peroris ATCC 700780]
          Length = 743

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/590 (29%), Positives = 282/590 (47%), Gaps = 32/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E       I +   +   VA +L  R +  +   K FL PS+  L  DP +
Sbjct: 10  YNWQFSPQVED-ADFTKIAKSVGLSSEVACLLFQRGIKDESSLKKFLEPSLEDLH-DPYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVDRIRQAIEQGELILVYGDYDADGMTSASIVKESLEQLGAECLVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQQGVSLIVTVDNGVAGHEAIDLAQSMGVDVIVTDHHSMPEVLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +       L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPEADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL V R     GL+ L E   I +S IT E +G+ + P +NA GR+ 
Sbjct: 237 VSLTDENRIMVQYGLEVLRNTQRIGLQELFEIAGIATSDITEETVGFQLAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E+  +A+ +   N+ R+ +  A+ ++A+  V          SV V
Sbjct: 297 DPNPAIDLLTGFDDEEVHEIALMIQEKNEERKEIVQAIYDEAKNMV------DPSKSVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RSIE  DI    +      
Sbjct: 351 LSKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSIEAVDI--FEALDPHRA 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L +  + +  +            +D  L+   +N+  
Sbjct: 408 LFIAFGGHAGAAGMTLEAEQLDALSEILETYVKDKGIDAKCKSQLYLDEELDLENLNLDT 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550
           +   E   P+G  N  P+F     ++++ R +    +HL++   S+ + + + +AF    
Sbjct: 468 VKSFERLAPFGMDNQKPIFYIRYFQVENARSMGAGDSHLKLRI-SKGTASFEVVAFGQG- 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               +    ++ K++ +   L VN W G    QL ++DA       F  +
Sbjct: 526 ---SKATEFAQTKQLELAVTLSVNQWNGQTTLQLMMVDARVDGVQLFNIR 572


>gi|294617211|ref|ZP_06696861.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1679]
 gi|291596524|gb|EFF27767.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           E1679]
          Length = 751

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/581 (29%), Positives = 269/581 (46%), Gaps = 45/581 (7%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN S+ ++ I EG QLIITVD G    DA+ YA   G+DVI+ DHH++      AYA
Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P           L   GV F V   +                   LDLVA+ T+ D+
Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312
           V L   NR  V  G+         GL+AL E   +      E  +G+ I P +NA GR+G
Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +      LL + D +E  + A KL+ +N+ R+ +   + ++A A V  +        + +
Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A ++  + G+P+  ++ +EDG   GSGRSIE  ++           
Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GLT+   N   L +   ++  +    L+  P  +ID            
Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRID------------ 451

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
              L+   P+G  NP P F F   + ++I+ +     HL+       S+ L A+AF  +G
Sbjct: 452 --ELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 507

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T   E L      ++ V G L +N W G K+ QL V D S 
Sbjct: 508 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 544


>gi|332367016|gb|EGJ44756.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK1059]
          Length = 739

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 277/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGVSLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           +  LDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VEFLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E+  +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAIELLTGFDDEEVRDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D   ++  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELADILTEYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    +D  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQED-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K M +   L VN W G    QL ++DA       F  +
Sbjct: 521 GNL----ATEFAQTKNMELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|270160144|ref|ZP_06188800.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           longbeachae D-4968]
 gi|289165080|ref|YP_003455218.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella
           longbeachae NSW150]
 gi|269988483|gb|EEZ94738.1| single-stranded-DNA-specific exonuclease RecJ [Legionella
           longbeachae D-4968]
 gi|288858253|emb|CBJ12121.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella
           longbeachae NSW150]
          Length = 584

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P+++ R+  +R ++       L+  ++ L+P    L   D A  R+ +A++  ++I+I
Sbjct: 17  NVPEVLNRIYASRGITE---ISQLDKQLQALLP-FDTLKGIDSACLRLEKALHEQQRIII 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L        +  +P+R   GYG  P +++        LIITV
Sbjct: 73  IGDFDADGATSTALAITALRAMGARFIDYLVPNRFEFGYGLTPQIVDVASKWKPSLIITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S++ ++ A   GIDV++ DHH        A A+VNPN+         +   GV+F
Sbjct: 133 DNGIASFEGVERANQLGIDVLITDHHLSAESIPNACAIVNPNQPGCQFPSKSIAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ + R L   N          ++ S LDLVAL TV DVV L   NR  V +G+   R
Sbjct: 193 YVMLALRRHLVNANWFQKMDIAEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMARIR 252

Query: 273 RQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +  G  G+KALIE        +   +LG+ I P +NA GR+ +  LG   LIS D Q+  
Sbjct: 253 QGLGRVGIKALIEVSGREYARLRESDLGFAIAPRLNAAGRLDDMALGIECLISTDEQQAR 312

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-----VVEGDRWHPGIVGL 385
               +LD LN+ R+ +E  M EQA   +     D    S        +    WH G++G+
Sbjct: 313 NYCQQLDELNEERKQIEIEMKEQALLVLEKLALDADYNSTHLPIALCLFDKTWHQGVIGI 372

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMA 443
           LA R+KE++ RP  A +   D +  GS RSI   +I  +++       G++ K GGHAMA
Sbjct: 373 LAGRMKERYHRPVIAFAAVSDDELKGSARSISDLNIRDVLAAIDKDYPGLIKKFGGHAMA 432

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
           AGL++   +       F       +           DG L  + + + +  +++ AGP+G
Sbjct: 433 AGLSIHPDSLKAFRAAFVLEVGRHIDLSQCEGEILTDGPLQPNELTLEIAQLIQQAGPWG 492

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
                PVF     ++   R+V   HL+MT  E+Q  + + AIAF +            R 
Sbjct: 493 QQFAEPVFD-NIFEVLEQRLVGKNHLKMTLIETQSKQQVDAIAFNIDLKSWP----NHRV 547

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVL 587
           K +H    L +N+++G  R QL + 
Sbjct: 548 KYIHAAYKLDINFFQGRTRLQLLIQ 572


>gi|332362085|gb|EGJ39887.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK49]
          Length = 739

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/592 (29%), Positives = 273/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W         N      +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQFATNFTDENFLKK-AKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENHGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAVGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLEELSDILTAYISDNDLDLTGKTALYLDEELYLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++     D  T + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQGD-ATFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|312128185|ref|YP_003993059.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778204|gb|ADQ07690.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 798

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 176/577 (30%), Positives = 296/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW+        N  + I  +  I   + +VL NR V   +  + FLNPS++ L  +P +
Sbjct: 6   KRWILKDNNNIENMDIEIDGR-KIKPQIIKVLNNRGVQEKEEIERFLNPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A + I QAI +  +++I+GDYD DG  S  L+   L +  +    YIP+R  DG
Sbjct: 64  LPDMKEAVKIINQAILHKNRVLIYGDYDCDGVTSTYLLYSALRNF-LPTTYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K +     L+ITVD G +S++ ++Y   +G +VI+ DHH+ K     A A+
Sbjct: 123 YGLNLDVLKK-LEGKFDLLITVDTGISSHNEVKYLKEKGKEVIITDHHEPKEVLPDADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D       L   GV F +L  +           +N  L   LD+VA+ T+ DV+
Sbjct: 182 INPKRKDSTYPFRDLAGVGVAFKLLHAL-------KNSGVNLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR +   GL V +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRIFAKFGLKVLKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  D  + E +A KLD  N+ R+ +E   +++A+  +  +   I +  + V
Sbjct: 295 DANLAVSLLLEQDVIKAESIAKKLDEENRKRQEIEEKTIKEAQGLI-AKNKSILKKKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  ++G   GSGRSI+GF++ + +    E  
Sbjct: 354 LSNSSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAE-- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  ++D VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +   ++ Q  ++D 
Sbjct: 527 LEDEDELISMKKVDIVCKLEKNLFNSVRKNQFNIIDI 563


>gi|110596823|ref|ZP_01385113.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341510|gb|EAT59970.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium
           ferrooxidans DSM 13031]
          Length = 572

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/578 (28%), Positives = 261/578 (45%), Gaps = 19/578 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           +RW  L          A+T+   +   VAR L NR V+  D A+D+   SI   +P P +
Sbjct: 4   YRWNLLA--PDDETVQALTEAINVSQPVARALCNRGVTTFDAARDYFRSSIEH-IPSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +    +A  R+++A+   EKIMI+GDYDVDG    A++  FL         YI DR  +G
Sbjct: 61  MQQMQRAVDRVLEAVRMHEKIMIYGDYDVDGTTGTAMLFLFLKEQGAEVTWYINDRFTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++  +     L+ITVDCG  +   ++     GIDVIV DHH+   E   AYA+
Sbjct: 121 YGLSAEGIDTALGRQVSLVITVDCGIRANREIKRCGELGIDVIVCDHHE-PDELPTAYAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV F +L  I      D+           LD VA+AT  D+V
Sbjct: 180 LNPKVPGSTYPFRELCGCGVAFKLLQAIAGDSGADD-----ESWQKYLDFVAIATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313
            L   NR  V +GL   R +     KAL   + + SS +   ++ + I P INA GR+G 
Sbjct: 235 ALEQENRTLVREGLKRMRVKPRGTFKALFSLMKVASSELGMFHIAFGIAPRINAAGRMGS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++L    L+S+   +    A +LD +N  RR ++S ++ +AE  V +        S IV+
Sbjct: 295 AHLAMEWLVSESMDDSVRHAGELDRMNALRREIDSDIMTKAEKMVESHFASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+++ EK   P+  +     G   GS RSIEGF+I + +        
Sbjct: 353 YDESWHLGVLGIVASKMLEKHYLPTVILGSMN-GFIKGSVRSIEGFNIYEALQEC--SAY 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG+ +   N       F +     +          +D +L    +    I
Sbjct: 410 LEQFGGHHQAAGVILRPENLAGFRKKFNEVCAASLSIEQQQKALAVDALLPLEEITPNFI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++L    P G GN  P+F     +L    R+++  H++ +           I F      
Sbjct: 470 NVLAQFAPLGYGNREPLFMSRELQLFGTPRLLSKRHVKFSVRDSAGRIFDVIGFDRPD-- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + + L         +   +    W   ++ Q+R+ D  
Sbjct: 528 IFDQLSTQTRPVFVMLYSVEKRMWNNREQIQIRLRDLE 565


>gi|88797974|ref|ZP_01113561.1| single-stranded-DNA-specific exonuclease RecJ [Reinekea sp. MED297]
 gi|88779171|gb|EAR10359.1| single-stranded-DNA-specific exonuclease RecJ [Reinekea sp. MED297]
          Length = 573

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/566 (31%), Positives = 282/566 (49%), Gaps = 17/566 (3%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
                 A ++++      +V R+   R V+       L PS+R L+ D  +L    +A  
Sbjct: 14  DIRTRPAHSLSKSLHPNPLVDRLYRARQVTDPQE---LEPSLRHLV-DYRLLKGLTEAVS 69

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
            + +A     ++++ GDYD DGA S AL +  L    ++ +  +P+R   GYG +  +++
Sbjct: 70  LLNRARSERWRVLVVGDYDTDGATSTALAVLGLQSFGLDVDYLLPNRFEYGYGLSAEIVD 129

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
             +     LI+TVD G  S + ++ A   G+ V+V DHH   +E   A A+VNPN+ D  
Sbjct: 130 LALTRQPDLIVTVDNGIASIEGVERANAAGVKVLVTDHHLAGAELPQAAAIVNPNQPDCA 189

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
                 C   V++ VL+ +   LR   + P   +L   LDLVALATV DVVPL   NR  
Sbjct: 190 FPSKAACGCTVLYYVLIALRAELRAQGQ-PDLPNLGQWLDLVALATVADVVPLDENNRRL 248

Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V  GL   R  Q  PG++AL E          A + G++IGP +NA GR+ +  +G +LL
Sbjct: 249 VTHGLNRVRAGQCRPGIRALFEVAGRQWQEAKASDFGFVIGPRLNAAGRLDDMTIGVQLL 308

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           +++   E   LA +L  LN  RR +E +M+      +       ++  + VV G+ WH G
Sbjct: 309 LAESDDEARSLASELHALNTERRQIEQSMVADVSKSLPDLSRTDKRCGI-VVTGNDWHEG 367

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439
           ++G++A+R+K++  +P  A +  ++G+  GS RS+ G  +   + +     EG+++K GG
Sbjct: 368 VIGIVASRVKDRIHKPVVAFAAGDNGQWKGSARSVPGVHMRDALDWVAKKSEGVVLKFGG 427

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGLT+         D F +    +  +   TP    DG L+ S + +     LE A
Sbjct: 428 HAMAAGLTIAADRSDEFADLFDQAVQALAESEALTPHLWCDGALSDSELTLDNALALEQA 487

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           GP+G   P P+F     ++   RV+   HL+MT +    E   AIAF V  +     ++ 
Sbjct: 488 GPWGQAFPEPLFYGE-FQISDRRVLADRHLKMTLQQGAGE-WPAIAFNVEPS-----ILN 540

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLR 585
           +   R+H    L VN +RG    QL 
Sbjct: 541 ASATRVHGLYQLSVNRFRGQVSVQLI 566


>gi|313890116|ref|ZP_07823751.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121477|gb|EFR44581.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 734

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/591 (28%), Positives = 278/591 (47%), Gaps = 34/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           ++W     +   +    + +K  +    A++L  R + + +    FL+  +  L  DP +
Sbjct: 6   YQWEIQEEKPD-SGFFQLAKKEGLSPESAQILYERGIQTPEQVGAFLHADLSQLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA  RI  AI   E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMEKAVTRIRLAIEKGETILVYGDYDADGMTSASIMKETLEMMGAEVRVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G + ++A+ +A  QG+DVIV DHH +      A+A
Sbjct: 124 YGPNLSVYKYFIQQEAISLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHGLPDTLPEAFA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F +   +   +               LDLVA+ TV D+
Sbjct: 184 IIHPEHPDADYPFKYLAGCGVAFKLATALLEGVP-----------AEFLDLVAIGTVADM 232

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIG 312
           V L G NR  V  GL + R+    GL+ L+   ++      E+ +G+ I P +NA GR+ 
Sbjct: 233 VSLQGENRILVKNGLSILRQTERLGLQELMALADVDLDQFNEDVIGFKIAPQLNALGRLD 292

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A  +++ N+ R+ +   + ++A   V           V V
Sbjct: 293 DPNPAIDLLTGFDEEEALAIAELVNLKNEERKTLVQTIYDEALQMVDL------SKPVQV 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + WHPG++G++A R+ E+  +    ++  EDG   GS RSI+  +I    +   +  
Sbjct: 347 LAKEGWHPGVLGIVAGRIMEEISQTVIVLN-CEDGYAKGSARSIDAINI--FEALNAKRE 403

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++   GGHA AAG+T+   N   L     +F               +D +L+   ++I L
Sbjct: 404 LMTAFGGHAGAAGMTLPVDNLDALSQALSEFIEENQIDCNQKNSLTVDAILDLEHLSIDL 463

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  L+S GP+G GNP PVF   + +L   R +    AHL++  +     T   +AF    
Sbjct: 464 LRSLQSIGPFGMGNPKPVFLVKDFQLGQARTLGSHNAHLKLRLQKGPVAT-DLLAFNQ-- 520

Query: 551 TPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              G  L   +  R + +   L VN W G    QL ++DA          +
Sbjct: 521 ---GHLLQDFQQARGLELLVTLSVNSWNGKTTLQLILVDARVTGLQLIDIR 568


>gi|15895500|ref|NP_348849.1| ssDNA exonuclease, RecJ [Clostridium acetobutylicum ATCC 824]
 gi|15025231|gb|AAK80189.1|AE007723_7 SsDNA Exonuclease, RecJ [Clostridium acetobutylicum ATCC 824]
 gi|325509647|gb|ADZ21283.1| SsDNA Exonuclease, RecJ [Clostridium acetobutylicum EA 2018]
          Length = 587

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/601 (28%), Positives = 278/601 (46%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           +W     +       AI +   I +++ ++L+NR +        FLNP     M +P  +
Sbjct: 3   KWFMKNIKADY---KAIAKAFGISEVIGKLLINRGIKDVKLIDSFLNPRFEK-MHNPKDM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +A+  +   I + ++I I GDYDVDG  S  L+   L  C  + +  IPDR+ DGY
Sbjct: 59  KDLKRASEILKSKIDSGKRIRIIGDYDVDGVISTYLLFTALKRCGADVDYDIPDRVKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI------ 189
           G N  ++EK I +    IIT D G  + + + YA    + VIV DHH +   E       
Sbjct: 119 GINIHIIEKCIEDSVDTIITCDNGIAAIEPINYAKECKLTVIVTDHHDIPFIEEENGQRS 178

Query: 190 ----PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A A++NP + +       LC AGVVF ++ ++Y     D       +   L   V
Sbjct: 179 FISSNADAIINPKQKECKYPFKGLCGAGVVFKLIEVLY-----DEFKIHKKEFYGLSQFV 233

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPS 304
           A+ATVCDVV L+  NR  V  GL +     N GL++LI + NI    I+  +LG++IGP 
Sbjct: 234 AIATVCDVVDLVDENRILVKNGLKLLNETRNVGLRSLIRQTNIEDKKISTYHLGFVIGPC 293

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +  G  LLIS++  E   L+ +L   N  R+ M    ++ A   +  +  +
Sbjct: 294 INATGRLDSAKRGIELLISENEDEASRLSKELFDFNNERKEMTQKGVDTAIDLI--ENTE 351

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   V V+     H  IVG++A R++EK+  P+  ++  E+G   GSGRSIEG+++   
Sbjct: 352 MKNHRVFVIYVPEIHESIVGIVAGRIREKYNVPTIVLTKTENG-AKGSGRSIEGYNM--F 408

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + IL+K GGH MAAGL++E  N   L +   +  +  + A    P   +D  + 
Sbjct: 409 EELIKCKDILLKFGGHPMAAGLSLEIENIDCLRERLNE--NTTLSAEDLIPKITLDMGMP 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +N   +  L    P+G  NP P+F     K+ S R++   H  L++ F S++   + 
Sbjct: 467 LEYINYDFVKELNMLEPFGKSNPKPMFGEKKAKVVSARIIGKNHNVLKLKFLSKNRRYID 526

Query: 543 AIAFRVYGTPLGEFLMQS-------------RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            I F          +                    + +  +  +N + G    Q+ V   
Sbjct: 527 GIYFGDIEEFEKIVINNYGSEQMNKMYSGIENNIYLDIAFYPDINEYNGKVNIQIIVQHF 586

Query: 590 S 590
            
Sbjct: 587 R 587


>gi|327543023|gb|EGF29469.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopirellula
           baltica WH47]
          Length = 599

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/588 (27%), Positives = 268/588 (45%), Gaps = 17/588 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S +   W              + +   +P +VA++LV+R V S + A  FL+  +  L  
Sbjct: 17  SGTKREWRITPHDA--PLVEQLIRTTGLPPVVAQLLVSRGVYSQEDAATFLDTKLTSLR- 73

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP +L     A  +I+ A      I+I+GDYD DG    A+++  L       + ++P+R
Sbjct: 74  DPQLLPGVPAATEKILAAAEAKTPIVIYGDYDADGMTGSAILVNCLRLIGAEVSYHVPNR 133

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N   + K +  G Q+II+VDCG  S    +     G+ +I+ DHHQ+  E   
Sbjct: 134 LEEGYGLNEDSIRKLVARGKQMIISVDCGIASLQCAKLCRELGVTLIITDHHQIGDELPD 193

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR-ILRQDNKVPLNF-DLLSLLDLVALA 248
           A  +V+P         G LC AGV F +   + +    Q    P     L+  L L A+ 
Sbjct: 194 ADIIVHPRLPGTAYPFGELCGAGVAFKLAWSLCQAKCGQKKVTPPMKRFLMQSLSLAAIG 253

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSIN 306
           T+ DVVPL+  NR  V  GL V + +  PGL  L++   +     +T EN+ + + P +N
Sbjct: 254 TIADVVPLLDENRVLVNHGLRVMQTEPLPGLWELMKLTKLDQASELTTENISFGLAPRLN 313

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+G++ LG  LL  +       LA  +D LN  R  ++ ++   A+ +  +   D +
Sbjct: 314 AAGRLGQAQLGIELLTIEAGDRAVALAQYIDQLNGTRDTLQRSVQLAAQKQAKSD-FDPE 372

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-EGFDIGKMV 425
               +V+ G  WH G++G++A RL EK+ +P   +S +  GK   +G     G  I    
Sbjct: 373 NDPALVLAGVGWHTGVIGVVAGRLAEKYAKPVIILSLDTAGKVDATGSGRVGGTGINLYE 432

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +    E  LV+ GGH  A GLT+   +       F +            P  +ID     
Sbjct: 433 ALRECEDRLVRYGGHPAAGGLTIRESDIEAFRGDFCEAVSKQWSEQELAPAIQIDAEAPL 492

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQ 542
             +N+  +  +E+  P+GAGNP PV    + +L    + +     HL +  + Q    ++
Sbjct: 493 GQLNLQTMKQIETMAPFGAGNPRPVLMGRDIELNEPAKKMGKGENHLSVRLK-QGERVIR 551

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +AF        E L Q  G  + +     +N + G +  ++ ++D  
Sbjct: 552 GVAFGAAD--WCEPLNQHNG-PIEIAYRPVINEFNGYRSVEVHLVDWR 596


>gi|32475516|ref|NP_868510.1| single-strand DNA-specific exonuclease [Rhodopirellula baltica SH
           1]
 gi|32446058|emb|CAD75887.1| single-strand DNA-specific exonuclease [Rhodopirellula baltica SH
           1]
          Length = 599

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/588 (27%), Positives = 268/588 (45%), Gaps = 17/588 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S +   W              + +   +P +VA++LV+R V S + A  FL+  +  L  
Sbjct: 17  SGTKREWRITPHDA--PLVEQLIRTTGLPPVVAQLLVSRGVYSQEDAATFLDTKLTSLR- 73

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP +L     A  +I+ A      I+I+GDYD DG    A+++  L       + ++P+R
Sbjct: 74  DPQLLPGVPAATEKILAAAEAKTPIVIYGDYDADGMTGSAILVNCLRLIGAEVSYHVPNR 133

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N   + K +  G Q+II+VDCG  S    +     G+ +I+ DHHQ+  E   
Sbjct: 134 LEEGYGLNEDSIRKLVARGKQMIISVDCGIASLQCAKLCRELGVTLIITDHHQIGDELPD 193

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR-ILRQDNKVPLNF-DLLSLLDLVALA 248
           A  +V+P         G LC AGV F +   + +    Q    P     L+  L L A+ 
Sbjct: 194 ADIIVHPRLPGTAYPFGELCGAGVAFKLAWSLCQAKCGQKKVTPPMKRFLMQSLSLAAIG 253

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSIN 306
           T+ DVVPL+  NR  V  GL V + +  PGL  L++   +     +T EN+ + + P +N
Sbjct: 254 TIADVVPLLDENRVLVNHGLRVMQTEPLPGLWELMKLTKLDQASELTTENISFGLAPRLN 313

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+G++ LG  LL  +       LA  +D LN  R  ++ ++   A+ +  +   D +
Sbjct: 314 AAGRLGQAQLGIELLTIEAGDRAVALAQYIDQLNGTRDTLQRSVQLAAQKQAKSD-FDPE 372

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-EGFDIGKMV 425
               +V+ G  WH G++G++A RL EK+ +P   +S +  GK   +G     G  I    
Sbjct: 373 NDPALVLAGVGWHTGVIGVVAGRLAEKYAKPVIILSLDTAGKVDATGSGRVGGTGINLYE 432

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +    E  LV+ GGH  A GLT+   +       F +            P  +ID     
Sbjct: 433 ALRECEDRLVRYGGHPAAGGLTIRESDIEAFRGDFCEAVSKQWSEQELAPAIQIDAEAPL 492

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQ 542
             +N+  +  +E+  P+GAGNP PV    + +L    + +     HL +  + Q    ++
Sbjct: 493 GQLNLQTMKQIETMAPFGAGNPRPVLMGRDIELNEPAKKMGKGENHLSVRLK-QGERVIR 551

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +AF        E L Q  G  + +     +N + G +  ++ ++D  
Sbjct: 552 GVAFGAAD--WCEPLNQHNG-PIEIAYRPVINEFNGYRSVEVHLVDWR 596


>gi|315222674|ref|ZP_07864563.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           anginosus F0211]
 gi|315188360|gb|EFU22086.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           anginosus F0211]
          Length = 744

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W                +K  +   VA ++  R +  + A +DFL PS+  L  DP
Sbjct: 4   SKYDWQIATNFSDEGFIKK-AKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI QAI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YELHDMDKAVTRIRQAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LI+TVD G   ++A++ A + G+DVIV DHH +      A
Sbjct: 122 DGYGPNASVYKYFIENQGVSLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEVLPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P   +      HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIIHPEHPEADYPFQHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL + +     GL+ L +     S  +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTDENRILVKYGLSILKNTQRIGLQELFKIAGIQSDELNEETVGFQIAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N+ R+ +   + ++A+  V           V
Sbjct: 291 LDDPNPAIELLTGFDEEEARDIALMINQKNEERKEIVQKIYDEAKTMV------DPNKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+ G  W+PG++G++A RL E+  +P   ++  E+    GS RSIE  DI    +    
Sbjct: 345 QVLAGKGWNPGVLGIVAGRLLEELHQPVIVLN-IENDLAKGSARSIEAVDI--FEALDPH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L      +  +    L T     +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNQVDLSTKNELFLDEELSLPDLTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  PVF   + K+++ R +     HL++     D    + +AF +
Sbjct: 462 ETLKNFEKLAPFGMDNKKPVFYLKDFKVENARTMGAGNTHLKLKVSQAD-AVFEVVAFGL 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S+ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GDL----ATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVNGIQLFNIR 568


>gi|91202780|emb|CAJ72419.1| similar to exonuclease RecJ [Candidatus Kuenenia stuttgartiensis]
          Length = 577

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/582 (30%), Positives = 291/582 (50%), Gaps = 18/582 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW        I     I     I +++A++L+NR ++    AK FL P I  L  DP  
Sbjct: 3   KRWFIAP--NNIELQTEIAGNLRISNLLAQILINRGITDVGAAKGFLQPQISTL-SDPSN 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA+ RI +AI N EKI+I+GDYDVDG  + ALM R L       N YIP+R+ +G
Sbjct: 60  LPDIEKASVRINEAIRNGEKIVIYGDYDVDGLTATALMYRCLKMFDARVNYYIPERLEEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + K    G  LI+TVDCG ++    + A + GI++I+ DHHQ   E   A+A+
Sbjct: 120 YGLNAEAIAKLKAGGTDLILTVDCGISACREAEIARSYGIELIITDHHQPSQEIPDAFAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVCD 252
           +NP               G+ F++   + +    ++         L+S + LVAL T+ D
Sbjct: 180 INPKLKATEKTFRDFSGVGIAFMLAWSVGQHYFPQKKVSNEFKDFLISAMGLVALGTIAD 239

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VVPL+G NR     GL   ++   PGL+AL+E  +  +  +   ++GY +GP INA GR+
Sbjct: 240 VVPLVGENRILTKYGLGALQQTKIPGLQALLEVSSLTNINLDTSHVGYRLGPRINAPGRV 299

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++ +   +L +  +++ + +A+ L+  N  RR M+  +L  A  K++ + +  +  ++ 
Sbjct: 300 SDAGVVVEMLTTACNEKAKEIALFLEEENNRRRAMQLDILSAARQKIVDEINLDETLAI- 358

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WHPGIVG++A+++ E+F RP+  I+  ++  G GS RSI  F +   +     +
Sbjct: 359 VLADQEWHPGIVGIIASKIAEEFNRPAVMIAVADE-IGHGSARSIPSFHMLDALECC--K 415

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+  GGHA AAGL +   N G       +     +      P   ID  ++ S +N  
Sbjct: 416 NMLISVGGHAQAAGLKIHPDNIGDFRTLLNRMMAQKLQKEDLVPFLNIDVAVDLSTLNRG 475

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
           L+  L+   P+G GN  PVFA  + ++    R +     HL    + Q + +++AI F +
Sbjct: 476 LLMELQLLSPHGEGNHIPVFAIKDLQIAGKPRRIGSNGQHLSFYVK-QGNVSMKAIGFGM 534

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +   L    G    +   L  N W  +   +L V D  
Sbjct: 535 GD-EIDRLLKN--GSTCSLAVVLKENNWMNNSSIELEVKDIK 573


>gi|254785317|ref|YP_003072746.1| single-stranded-DNA-specific exonuclease RecJ [Teredinibacter
           turnerae T7901]
 gi|237685191|gb|ACR12455.1| single-stranded-DNA-specific exonuclease RecJ [Teredinibacter
           turnerae T7901]
          Length = 580

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 266/564 (47%), Gaps = 21/564 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ RVL +R ++     D+    +  L+  P  +   + A   +   +    ++ I GD
Sbjct: 26  PLLQRVLSSRGITHPQQLDY---QLANLLK-PGAMRGLEAAVALLADILTRGGRVCILGD 81

Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +R L        +  +P+R   GYG  P ++E        L+ITVD G
Sbjct: 82  FDADGATSTALAVRCLRAFGCQHVDFLVPNRFEFGYGLTPEIVEVVKTLAPDLLITVDNG 141

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
             S D +  A   G+ V+V DHH        A  +VNPN+L       +L   GV+F V+
Sbjct: 142 IASLDGVAAAQAYGMQVLVTDHHLPGEILPSAEVIVNPNQLHCDFASKNLAGVGVIFYVM 201

Query: 220 VLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
             +   LR             ++   LDLVAL TV DVVPL   NR  V +GL   R  +
Sbjct: 202 NGLRAHLRAQGWFARKGLQEPNMAQFLDLVALGTVADVVPLDSNNRTLVAQGLNRIRAGR 261

Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
              G++AL E      + + A +LG++ GP +NA GR+ + +LG R L++D   E   LA
Sbjct: 262 CCAGIRALFEIGRRPLARLQASDLGFVAGPRLNAAGRLDDMSLGIRCLLADSESEARELA 321

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKE 392
            +LD LN+ RR +E +M  +A   +       +   + I +  + WH G++G+LA+R+K+
Sbjct: 322 AELDELNRERRSIEQSMQREALLHLDKLLAAERDWPLAICLYQEDWHQGVIGILASRIKD 381

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +  RP+   +  +D    GSGRSI G  +  ++        G+L K GGHAMAAGL++ +
Sbjct: 382 RAHRPTIVFAEADDATLKGSGRSIPGIHLRDLLDAVATRHPGLLTKFGGHAMAAGLSLAK 441

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +  R      +    ++           DG L A   ++A+   L   GP+G   P P 
Sbjct: 442 RDLDRFRLALVEETSRLLEGEAPAAEILTDGELQAEDFSLAVARSLAELGPWGQAFPEPC 501

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQD--SETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F     ++ + R+V   HL++     D     L AIAF V      +    S  + + + 
Sbjct: 502 FDGK-FRVVNQRIVGEKHLKLVVTPGDYSGLVLDAIAFNVDLNVWPD----SSIQWVELV 556

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN +RG +  QL V   +P+
Sbjct: 557 YQLNVNEFRGEESLQLMVEQITPL 580


>gi|307152954|ref|YP_003888338.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7822]
 gi|306983182|gb|ADN15063.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7822]
          Length = 654

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/593 (28%), Positives = 286/593 (48%), Gaps = 21/593 (3%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
           +   RW+       I     + +   +  I+A+VL+NR ++    A+ +L P   LL+P 
Sbjct: 3   LPNQRWLISSSAPEI--VEQLVETTGLLPIMAQVLINREINTPELAQVYLEPE-SLLLPS 59

Query: 72  P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P    +D   +   + +AI + +KI I GDYD DG  S AL++R L H   + +  IP R
Sbjct: 60  PLEEFSDLAVSVELLEEAISSGDKIAICGDYDADGMTSTALLLRALRHLGADVDYAIPSR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N  ++E F   G  LI+TVD G ++Y+ +  A + G+ VI+ DHH +  +  P
Sbjct: 120 MKEGYGINTRIVEDFAKSGVGLILTVDNGISAYEPIARAIDLGLSVIITDHHDLPEKLPP 179

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  L   S    L   GV +++ V   + +     +        LL+L  L T+
Sbjct: 180 ADAILNPKLLPSSSPYRGLAGVGVAYILAVTTAQNMGLLKGLT-----DQLLELFTLGTI 234

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307
            D+ PLIG+NR ++ +GL    +    G++ALI+          +  +++G+ +GP INA
Sbjct: 235 ADLAPLIGVNRRWLKRGLRKLPKSQLAGVQALIQMSGVSDEQKELKPDDIGFRLGPRINA 294

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+  +   LL ++D       AM+ + +NQ R+ + S + E+A   + T   + QQ
Sbjct: 295 VGRIGDPQVVIELLTTEDEGLALERAMQCEQINQKRQQLCSKIEEEAVNLIETIPINWQQ 354

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+++    WH G++G++A+RL E++G P F  ++EE+      G +    +     + 
Sbjct: 355 DRVLIIVQPHWHHGVIGIVASRLVERYGAPVFIGTYEEEEPDKIRGSARGIEEFHVFEAL 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                +L K GGH  A G +    N          FAH  +      P+ KID   + + 
Sbjct: 415 EFCHDLLGKYGGHKAAGGFSFPAKNLEAFKQRLSTFAHQCLKPEFLKPLVKIDAQADFNQ 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +N  L   ++   P+G GN  P+F  PN ++   +VV   HL++    +D   ++AIA+R
Sbjct: 475 LNPYLYGQIDGLQPWGIGNDFPIFWTPNVRVIEQKVVGQKHLKLILAQEDGTEIKAIAWR 534

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAK 599
                            + V   L  N+W G+   +L ++    PV      K
Sbjct: 535 WSQYF-------PLPMCLDVAYKLKENHWNGNTNIELELVGVRVPVAAQATKK 580


>gi|261492651|ref|ZP_05989204.1| recombination protein J [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494600|ref|ZP_05991081.1| recombination protein J [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309712|gb|EEY10934.1| recombination protein J [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311810|gb|EEY12960.1| recombination protein J [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 573

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/561 (30%), Positives = 268/561 (47%), Gaps = 20/561 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R +        L  +++ L   P  L + ++A   ++QA     +I+I GD
Sbjct: 20  PLLNRIYQSRGIKNTQE---LEHNLKNLHR-PQQLANIEQAVDLLLQAFREKSRIIIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S +L +  L     +  +  IPDR   GYG + ++ E  + +GA L++TVD G
Sbjct: 76  FDADGATSTSLALIALRQLGFDKVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S + +    +  I V+V DHH        A ALVNPN          L   GV+F V+
Sbjct: 136 ISSTEGIALLKSHQIQVLVTDHHLPPESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVM 195

Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + +   +R+ +        +   LLDLVAL TV DVVPL   NR  V +GL   R     
Sbjct: 196 MALRSRMREQHLFENKPEPNFAELLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCR 255

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            G+KAL E      S + A +LG+ I P +NA GR+   +LG  LLI ++ +    LA+ 
Sbjct: 256 LGIKALAEVGKRDLSTLQAADLGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALD 315

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           LD LNQ R+  E  M  +A +           +QA  IV+    WH G++G+LA+R+K++
Sbjct: 316 LDSLNQTRKEFEQEMKAEALSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQ 375

Query: 394 FGRPSFAISF--EEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
           F RP  A +   EE     GS RSI G  +  ++         ++ K GGHAMAAGLT+ 
Sbjct: 376 FNRPVIAFAQESEESEYLKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIH 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           +         F +  + I+       +   DG LNA    +A  +M+   GP+G   P P
Sbjct: 436 QSKLDLFKQIFDQSINAIIEPEQLQGIIYTDGELNAQEFTLANAEMIRQGGPWGQHFPEP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F      +   +++   HL++  +S+  +   AI F V      +  +    K+  +  
Sbjct: 496 SFEGE-FSILQQKLLAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSI----KKARLVY 550

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L +N +RG K  QL+V    
Sbjct: 551 RLDINEFRGEKSLQLKVEYLK 571


>gi|78043570|ref|YP_361037.1| single-stranded DNA-specific exonuclease RecJ [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995685|gb|ABB14584.1| single-stranded DNA-specific exonuclease RecJ [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 854

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/589 (28%), Positives = 290/589 (49%), Gaps = 21/589 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+         +   +     I  + A++LVNR +      + F   +I      P +
Sbjct: 4   KNWLIFETSHLGEK--YLEDFFRIEPLTAKMLVNRGIFHPRGVRRFFWGNIDDTY-SPYL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D +KA + I+    N+EK +I+GDYD DG  S AL+  FL     N + YIP+R+ +G
Sbjct: 61  LKDMEKAVKLILSG-RNTEKFLIYGDYDADGLTSTALLYDFLRKRGFNVDWYIPNRLDEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   + K + EG   II+VDCG T+ D ++     G  V++ DHH+ + E   A A+
Sbjct: 120 YGLHLPPLVKALEEGISFIISVDCGITAVDEVKTVREMGAKVVITDHHEPQEEIPVAEAV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP + D       L   GV   +++ +   L +         L   LDL  + T+ D+V
Sbjct: 180 INPKQKDCPYPFKGLAGVGVALKLVLALGMALGERE----EDILDQYLDLFTVGTIADIV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL+  NR +V++GL      G PGLKAL E   ++   IT  ++G+++ P +NA GR+ +
Sbjct: 236 PLVDENRIFVIEGLKRLAATGRPGLKALKEVAQLNREEITTRDVGFILSPRLNAAGRLKD 295

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   LLI ++ +    LA +L   NQNR+ +E+ + + A   +  +  D+ +  ++++
Sbjct: 296 PALAFELLIEENYERALALAYRLSEENQNRQGIEAEIFKAAVETIEREV-DLDREKILII 354

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            GD WHPG++G++A++L EK+ RP   ISF+ + +G GSGRS+ GF++ + +     +  
Sbjct: 355 GGDGWHPGVIGIVASKLMEKYYRPVILISFDGE-EGKGSGRSVFGFNLFEALKAV--KDY 411

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  A G+ V +  F    +    +A   +P  +  P  +++ V+  + +N+ + 
Sbjct: 412 LTHFGGHERAVGVGVLKSRFLEFKEALLAYAEKHLPDELLLPKIEVEEVVGENDLNLKIS 471

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551
           D +    P+G  NP P+F     +++  + V     HL+   +  + E   +IAF     
Sbjct: 472 DEIALFAPFGEQNPEPLFLIKGGQIRGAQAVGKNGNHLKFNVKL-NREIFSSIAFSKGDY 530

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                    +   + +      N + G    QL V + +P EG  F  K
Sbjct: 531 ----LEFVYQQNEVDLAFIPKPNRFNGKTELQLNVKEIAPGEGRIFKVK 575


>gi|315156160|gb|EFU00177.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis TX0043]
          Length = 770

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 285/592 (48%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S ++W      E     +   +K  I  ++ ++L +RN+ + +  + FL+P+I  +  DP
Sbjct: 4   SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTKEALRKFLHPTIEDIY-DP 62

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V
Sbjct: 63  FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYGPN  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AY
Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPGAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P         G L   GV F V   +   L              LLDLVA+ T+ D
Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +N  GR+
Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNVLGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE+  G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V 
Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430
           ++    WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E
Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +      GGH MAAG+T+   N   + +    F       +       I   L  S    
Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             ID L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++
Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              P  + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569


>gi|146283098|ref|YP_001173251.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas stutzeri
           A1501]
 gi|145571303|gb|ABP80409.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas stutzeri
           A1501]
          Length = 528

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/528 (32%), Positives = 264/528 (50%), Gaps = 16/528 (3%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132
            L   D A   +V+A+   ++I+  GD+D DGA +  + +  L      + +  +P+R  
Sbjct: 6   QLKGIDAAVELLVEALEKRQRILFVGDFDADGATASTVGVLGLRQLGAAHVDYLVPNRFE 65

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYG  P ++   +     L++TVD G +S D +  A   G+ V+V DHH    E   A 
Sbjct: 66  YGYGLTPEIVAVALQREPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAAD 125

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248
           A+VNPN+ +       +   GV+F VL+ +   LR+ +          +L  LLDLVAL 
Sbjct: 126 AIVNPNQPECAFPSKCIAGVGVIFYVLLALRARLRELDWFTRQGWAEPNLAELLDLVALG 185

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306
           +V DVVPL   NR  V +GL   R  +  PGL+A++E        IT+ +LG+++GP +N
Sbjct: 186 SVADVVPLDANNRILVHQGLARIRAGRARPGLRAILEVAGRDHRRITSTDLGFILGPRLN 245

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+ + +LG   L+ +D      +A +LD LN++R+ +E  M  +A A++     +  
Sbjct: 246 AAGRLDDMSLGIECLLCEDEALARDMATQLDELNKDRKAIEQGMQREALAQLKDLPLE-D 304

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
               + +    WH G++G+LA+RLKE++ RP+ A +   DG   GS RS+ GF I   + 
Sbjct: 305 LPFGLCLFEPDWHQGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALD 364

Query: 427 --FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              A   G++ K GGHAMAAGL++ + NFG     F       +     T     DG L+
Sbjct: 365 AVAARHPGLISKFGGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEDDLTGRLLTDGQLS 424

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQA 543
               ++ L   L +AGP+G   P P+F     +L   R+V   HL++  +S+    TL  
Sbjct: 425 VEEFHLELARALRNAGPWGQHFPEPMFHG-VFQLVQQRIVGERHLKLVLKSECGSLTLDG 483

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           IAF V      E       +   +   L VN +RG +  QL V   +P
Sbjct: 484 IAFNVDR----EIWPNPTVRWAELAYKLDVNEYRGQESVQLMVAHIAP 527


>gi|332359747|gb|EGJ37564.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK355]
          Length = 739

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 171/592 (28%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  +   ++FL PS+  L  +P
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEESLQEFLEPSLDQLH-NP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGVSLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +     S  +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQSDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +  +        V
Sbjct: 291 LDDPNPAIELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDLK------RPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T++      L D   ++  +    L       +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLKADKLAELADILTEYILDNDLDLTGKTALYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|256847028|ref|ZP_05552474.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715692|gb|EEU30667.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 769

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/580 (29%), Positives = 270/580 (46%), Gaps = 27/580 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           + + W   +  + ++    I ++  I   +A +LV R   S+   + FL P ++ +   P
Sbjct: 4   TKYEWQ-RVANQDVDLVNNIQEQCQINAALANLLVARGFQSVHEVQLFLKPQLQQIQK-P 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D DKA  RI QAI   E+I ++GDYD DG  + A+M   L       N YIPDR  
Sbjct: 62  DRLHDMDKAVARITQAIKQGEQITVYGDYDADGMTATAVMFETLESLGAKVNYYIPDRFK 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    ++ I  G QL++TVD G T    + +A +QG+DV++ DHH +  E   A 
Sbjct: 122 DGYGPNQDAYQRLITGGTQLLVTVDNGVTGKKEVAFAHDQGVDVVITDHHSLPVELPNAV 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P    DL   G L   GV F V   +                  LLDLVA+  + D
Sbjct: 182 AIVHPQYPGDLYQYGDLSGVGVAFKVAWALLGEFP-----------TELLDLVAIGEIAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +V +   N   V  G+   +    PG+KAL++        +T++++ + + P +NA GRI
Sbjct: 231 LVSMAKENHVLVKFGIQQLQAGLRPGIKALLKIAGVQEESLTSQDVSFKLAPRLNALGRI 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
              N G +LL + D    E LA  +D  N+ R+ +   + ++A  K   Q  D  +   +
Sbjct: 291 ANGNEGVKLLTTVDEDAAEQLAKDVDQCNRQRQDLVEQITQEALQKA--QAPDNLRRRTL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           ++ G  WH G++G++A+RL EK G+P+   S    +    GSGRS++G+D+    +    
Sbjct: 349 LIVGHDWHQGVLGIVASRLVEKTGKPTIVASVNHGELVAKGSGRSVDGYDL--FAALDPH 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L   GGH MA G++        +    ++ A          P   I G L    +  
Sbjct: 407 RKLLTAFGGHVMACGMSFMITQVPAIAKVLEQAAEAQHLDANQKPRLMIAGTLQPDEITE 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L   ++   P+G  N  P+F   +  + S R +     HL+ T +    ++L  +AF  
Sbjct: 467 KLYQQIQQLAPFGPDNEEPIFEITDPIITSKRQMGKNNEHLKFTLK-GTRQSLDVLAFGK 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
                      S G  + + G + VN W+G    QL + D
Sbjct: 526 G----SNVDFFSPGVHLKLVGKVAVNSWQGRTTPQLLLED 561


>gi|229918414|ref|YP_002887060.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium sp.
           AT1b]
 gi|229469843|gb|ACQ71615.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium sp.
           AT1b]
          Length = 764

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 181/592 (30%), Positives = 286/592 (48%), Gaps = 30/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72
           S  +W+             +  +  I   +A +LV R    ++ AK FL     L+  DP
Sbjct: 4   SKKQWLYPETNPDD--VTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHDP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +    +K   RI QA  + E ++I+GDYDVDG ++ ++M   L+   V A  YIP+R  
Sbjct: 62  YLFEQMEKVVTRIKQAADDGEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   NEG  L+ITVDCG +  +      + G+D+I+ DHH+ K     AY
Sbjct: 122 EGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKDLGVDLIITDHHEPKETLPDAY 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P  +D       L  AGV   V   +   + +            LLDL  L T+ D
Sbjct: 182 AIIHP-HIDPGYPYDKLAGAGVALKVAHAVLGRMPE-----------ELLDLAVLGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VPL G NR    KG+        PG+ AL E      S +  E++G+  GP INA GR+
Sbjct: 230 LVPLDGENRLLAKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +    ++L+++  +E   LA +LD  N+ R+ +   +  +A+  V      + +  V+
Sbjct: 290 DSAMPALQMLLAEHVEEALELAKQLDKQNKERQDIVKTIAAEAKELVEA---SMTEDRVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV  ++W+PG+VG++A+RL E + RP   +    E GK  GSGRSI+GFD+      +  
Sbjct: 347 VVASEKWNPGVVGIVASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDL--FKELSKN 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           E IL   GGH  AAG+T++  +   L +   + A   +P  +  P   +D  L+ + V++
Sbjct: 405 EDILPHFGGHPAAAGMTLQSEHVAELRERLNRQA-ESIPDDVFVPRVNVDLKLSVNDVSL 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            LI  +    P+G GNP+P     + KL+ IR +     HL++   + D   L  I F  
Sbjct: 464 DLISEIGKLAPFGMGNPSPRVVVADAKLRDIRQIGRDATHLKVQL-AGDKRELDGIGFGF 522

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S+   + V G L VN W G ++ QL + D    +   F  +
Sbjct: 523 GHV----VSEISKMAHISVMGSLQVNEWNGMRKPQLMIQDLRVDDFQVFDYR 570


>gi|323351349|ref|ZP_08087005.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis VMC66]
 gi|322122573|gb|EFX94284.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis VMC66]
          Length = 740

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVNRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHRGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L    V  +D  L+   + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELHLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QD  + + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|324994008|gb|EGC25927.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK405]
 gi|324994672|gb|EGC26585.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK678]
 gi|327463267|gb|EGF09588.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK1]
 gi|327474875|gb|EGF20280.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK408]
 gi|327490001|gb|EGF21790.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK1058]
          Length = 740

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKARLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAKSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D ++   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEKARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELYLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    QDS T + +AF  
Sbjct: 462 DTLKSFERLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQDS-TFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|94497632|ref|ZP_01304200.1| single-stranded DNA-specific exonuclease [Sphingomonas sp. SKA58]
 gi|94422849|gb|EAT07882.1| single-stranded DNA-specific exonuclease [Sphingomonas sp. SKA58]
          Length = 588

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 234/593 (39%), Positives = 332/593 (55%), Gaps = 15/593 (2%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66
           L +  S+SG  W              +       D+V ++L+ R  + D      NP+IR
Sbjct: 5   LNISRSLSGQPWRWRGAGADTRDPACVP-----DDLVTQLLLARGCTRDGLDAHRNPTIR 59

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
             MPDP +  D D AA R+  A+   E + IFGDYDVDGA S AL++R L    ++A  Y
Sbjct: 60  GFMPDPSLFRDMDVAAERLADAVQRQEDVRIFGDYDVDGATSAALLIRLLRDLGLHARPY 119

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDR+++GYGP+   + +   EGA LI+TVDCG+ +++AL  A   G+DV+V+DHH+  S
Sbjct: 120 IPDRLMEGYGPSGEALVRLAGEGASLIVTVDCGAQAFEALSMAKASGVDVVVVDHHKCAS 179

Query: 187 EEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSL 241
           +   A+ALVNPNRLD+       GHL A GV FL+   + + L            ++L L
Sbjct: 180 QLPEAFALVNPNRLDEHPEAALHGHLAAVGVAFLLGARLLKTLDARGWFASRQKPNILDL 239

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LD+VAL TV DV  L GLNRA+V +GL V  ++ N GL ALI+   ++      +LG+ +
Sbjct: 240 LDIVALGTVADVAQLKGLNRAFVAQGLKVMSKRRNIGLSALIDASRLTRAPLCHDLGFAL 299

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGR+G+++LG RLL ++D  E   +A +LD  N+ RR +ES + EQAEA +  Q
Sbjct: 300 GPRINAGGRVGQADLGVRLLTTEDPAEAARIAAQLDQYNEERRAIESTVQEQAEALLAAQ 359

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                  +V V+ G  WHPG++G++A R+KEK GRP+  I+ ++ G G GSGRSI G D+
Sbjct: 360 G----NRAVAVIAGAGWHPGVIGIVAGRIKEKAGRPAIVIALDDAGVGKGSGRSISGVDL 415

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  V  A + G+LV GGGHAMAAGLTV       L D+  +     V          ID 
Sbjct: 416 GAAVLAAKDSGLLVAGGGHAMAAGLTVAADRIDALADYLDERLSAAVAKARDDRALLIDA 475

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
           VL  + VN   +  L+  GPYGAG P P+ A    ++    VV   HL+      D  ++
Sbjct: 476 VLAPTGVNPDFVAALDQGGPYGAGWPAPLIAAGPMRVIKADVVGNGHLRAIMAGDDGRSI 535

Query: 542 QAIAFRVYGTPLGE-FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           + IAFR   T LG+  L   R +R+ V G   ++ W      +L + DA+  +
Sbjct: 536 KTIAFRRAETDLGQAILAAPRDRRLWVAGKAKIDDWGSRPAAELHLEDAAWAD 588


>gi|332637914|ref|ZP_08416777.1| single-stranded DNA-specific exonuclease [Weissella cibaria KACC
           11862]
          Length = 768

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/580 (31%), Positives = 292/580 (50%), Gaps = 27/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           ++W           A  I +   + ++VA++LVNR     + A  FL P +  L  DP +
Sbjct: 6   YQWDF-PAVANEAAAKEIAETFGVSELVAKILVNRGYDTIETANAFLRPGVEGLY-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D A  RI+ AI N EKI+++GDYDVDG  S A+M   L     + + Y+P+R  DG
Sbjct: 64  LHDMDVAITRIMTAIDNGEKIVVYGDYDVDGITSTAIMTWALELMGADVSYYVPNRFKDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN +  ++   EG QL+ITVD G +  D + +  N G+DVIV DHH++ +E   A A+
Sbjct: 124 YGPNLAQYQRLAGEGMQLLITVDNGVSGRDEVAWLMNNGVDVIVTDHHEMPAELPEAVAV 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   D     G L  AGV F V   +                  ++DL AL  V DV+
Sbjct: 184 VHPRHPDGAYPFGGLSGAGVAFKVASALLEE-----------PADEVMDLAALGAVADVM 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            L+  NRA V  GL   +    PGL AL++    +   I +  +G+ IGP +NA GR+ +
Sbjct: 233 ELVDENRAIVAMGLANLKEDPRPGLAALLQTAGTNQADIDSMTIGFTIGPRLNALGRLAD 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G RLL++DD +E   LA +++ LN+ R+ +    +     + L Q   +    V+V+
Sbjct: 293 ATDGVRLLLADDPEEASALAGQIETLNRERQEL----VATISDEALAQAQTLAADPVLVI 348

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++A+++ E  G+P+  ++ +EDG+  GSGRS+  FD+           +
Sbjct: 349 AGHGWHEGVLGIVASKVVEATGKPAIVLN-DEDGQMKGSGRSVPAFDL--FAGLDGHRDL 405

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGHA AAG+T+   N   + D  +  A     A    P  +I   + A   N    
Sbjct: 406 LTAFGGHASAAGMTIPTANLQAVRDVLRTEADAQGLAEAGLPEIRIAAEVTAKEFNAQNY 465

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTP 552
           + L+   P+G GNP P+FA   + +Q+++ ++   HL+ T  +Q   +L  IAF      
Sbjct: 466 EQLQVLAPFGEGNPEPLFAVALNGVQNVKTMSEGKHLRFTASTQVG-SLPVIAFGRGSLA 524

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                +  R + + + G +  N +RG    Q+ + D    
Sbjct: 525 ---EDLAGRFESIKIVGTMSENRFRGDVTYQMMLTDIEAA 561


>gi|125718237|ref|YP_001035370.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           sanguinis SK36]
 gi|125498154|gb|ABN44820.1| Single-stranded DNA-specific exonuclease, 5'-3', putative
           [Streptococcus sanguinis SK36]
          Length = 740

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 272/592 (45%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVDRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N     L   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVEFLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L       +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELYLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++     D  T + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQGD-ATFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|320160720|ref|YP_004173944.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila
           UNI-1]
 gi|319994573|dbj|BAJ63344.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila
           UNI-1]
          Length = 565

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/583 (28%), Positives = 263/583 (45%), Gaps = 29/583 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            RW              +        +  ++L NR ++    A+ +L   +      P +
Sbjct: 7   KRWKIAPVVPSY-LVEELK---DYSPVTRQLLYNRGITSKIEAEHYLQADLPG--YSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L+   +   R++ A+ + EKI I+GDYDVDG  +  LM+  L     +   YIP+R  +G
Sbjct: 61  LSGMTEVVDRLLYAVDHREKIAIYGDYDVDGVTATTLMVEVLQAYGADVQWYIPNRFDEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +    G  +++TVDCG  S    + A  QG+D+I+ DHHQ  SE   A  +
Sbjct: 121 YGLNADAVRELHERGVDVLLTVDCGIRSPGEARLAAQQGMDIIISDHHQPGSELPEAVGV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           + P +  ++    HL   G+ F +   +                 + LDLVAL TV DVV
Sbjct: 181 ICPKQAGNVYPYEHLSGVGLAFKIAEALLLRRPLVGVSAH-----NWLDLVALGTVADVV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL G NR+ V KGL + ++    G+ AL     +    I + ++G+++GP +NA GR+  
Sbjct: 236 PLTGENRSLVRKGLEILKQSNREGILALARVAGLKLPSIESSHIGFILGPRLNAAGRVES 295

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LL++ D  +  +LA +LD  N+ R+ +   + E+A         D     +I+ 
Sbjct: 296 AKAAVELLLARDLFQAGILAQQLDAQNRERQRLTQEVQERAIEIASAGKSDY----LIMA 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFA-ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
               ++PG+VGL A+RL E + RP+    S E+ G+   S RSI  F I + +    E  
Sbjct: 352 FDPAFNPGVVGLAASRLVELYYRPAIVGQSEEDAGQTRASCRSIPEFHITRALDQCAE-- 409

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH  AAG TV   N   L +     A   +  L   P    D  L  S +   +
Sbjct: 410 LLERHGGHQAAAGFTVRNENLPVLQERLSSIAEQTLGNLDLIPSLHADMELPLSEIQPEV 469

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  L    P G GNP   F     +++  R V     HL+++          AIAFR   
Sbjct: 470 LWDLRRLQPTGEGNPEAFFVSRGVQVKDARCVGARGEHLKLSLVD-GRIVWDAIAFRQGH 528

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                  +Q+  + + V   L  N + G+   QLRV D  P +
Sbjct: 529 H------IQNMPRFVDVLYTLEQNTYNGNTTLQLRVRDLKPAQ 565


>gi|158522117|ref|YP_001529987.1| single-stranded-DNA-specific exonuclease RecJ [Desulfococcus
           oleovorans Hxd3]
 gi|158510943|gb|ABW67910.1| single-stranded-DNA-specific exonuclease RecJ [Desulfococcus
           oleovorans Hxd3]
          Length = 573

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/572 (30%), Positives = 277/572 (48%), Gaps = 16/572 (2%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82
           Q   +   AI +     DI A +LVNR + S+  A+ FL+ ++  L P P  +   D A 
Sbjct: 9   QPDPSAVTAIAKALPCSDIAASLLVNRGILSVKQARHFLSATVADL-PSPFSMKGIDTAV 67

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
            RI  A+ N E I++FGDYD DG  + AL++ FL+        ++P RI++GYG  P  +
Sbjct: 68  ARIHSALINHETILVFGDYDADGITATALLVGFLTQAGATVRHHLPHRILEGYGLKPRHI 127

Query: 143 -EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            E      A L+ITVDCG TS+ A       GID+I+ DHHQ  +E   A A+++P +  
Sbjct: 128 TEVAATHKASLLITVDCGITSHAAALACREAGIDLIITDHHQAPAEPPTALAVIDPAQAG 187

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGL 259
             SG G L   GV F +L+ +   LR+          +L +  DLVA+  + D+VPL G 
Sbjct: 188 CPSGLGDLAGVGVAFYLLIALRAFLREKGFWKTRPEPNLKACCDLVAIGAIADIVPLTGE 247

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGS 318
           NR  V  GL + R    PG++ALI    I  P ++AE++ + + P +NA GRI  +    
Sbjct: 248 NRILVRTGLELLRTPSRPGIEALIAGAKIKKPALSAEDVAFRLAPRLNAPGRIDHAATAL 307

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            LL+++  +    +A +L+ LN  R+++E  +  + +  V  + + I++   +V+   +W
Sbjct: 308 ELLLAETKEVAVKIAGRLNRLNTKRQMIEEEISGEIQQIVNDRINTIKERRSLVLAHRQW 367

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H G++G+ A+R   ++  P   I+   D  GIGS RSI G  +   +       +    G
Sbjct: 368 HQGVIGIAASRAARRYSLPVALITISGD-MGIGSARSIPGLHLYDALKGCAR--LFEDFG 424

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHA AAG  +   N       F+             P  ++D  L    +   L+  +E 
Sbjct: 425 GHAQAAGFRIRMENLAAFETQFEYIVRQQTTPGDFVPAVEVDCELAMDRITNTLVREIEG 484

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFL 557
             P+GAGNP P+F+  N +     ++N  H +MT     ++  + AI F    +      
Sbjct: 485 LSPFGAGNPEPLFSARNVRASDTFMINGRHRKMTLAHPGTDRGIAAIWFNTPASHQESSF 544

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            +       +   L  + W GS   Q+ + DA
Sbjct: 545 FR------RILFRLRQDTWNGSGAPQIIIEDA 570


>gi|251777785|ref|ZP_04820705.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243082100|gb|EES47990.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 588

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/601 (28%), Positives = 291/601 (48%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW     +        I++K+ I +++ R+++NRN+  D   K+++NP+      DP  +
Sbjct: 4   RWFVKNIKADY---KNISKKYGISELITRLMINRNIVEDDMIKNYINPNYSNFH-DPYEM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KAA+ + + I   EKI I GDYDVDG  SV ++   L  C  N +  IPDRI DGY
Sbjct: 60  KDIEKAAKILKEKIELKEKIRIIGDYDVDGVISVYILYTALKKCGANVDYEIPDRIKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N  ++ +  N+    ++T D G ++ + ++YA   G+ VIV DHH +   E       
Sbjct: 120 GINKKIILEAKNDEVDTLLTCDNGISAIEQIKYAKELGMTVIVTDHHDIPFVEDEKGDRI 179

Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  +++NP +++       +C AGV F ++ ++Y  ++         +L  L++ V
Sbjct: 180 FISSEADSIINPKQIECGYKFDKICGAGVAFKLIEVLYEKMKISK-----EELYKLIEFV 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV LI  NR +V  GL +     N GLK L++   +    I+  +LG++IGP 
Sbjct: 235 AIATVCDVVDLIDENRIFVKNGLKMINNTTNLGLKYLMKETKMDGKEISTYHLGFVIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +  G +LL+S D +E   LA +L  LN  R+ M S  +E+A   +  +   
Sbjct: 295 INASGRLDSAKKGLKLLLSQDEEEALNLAKELVELNDERKSMTSDGVEKAIEII--EGST 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   V V+   + H  + G++A R++EK+  P+  ++  E+G   GSGRSIE +++   
Sbjct: 353 MKDDKVFVIYIPQVHESLAGIIAGRIREKYNVPTIILTKAEEGV-KGSGRSIEEYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +L K GGH MAAGL++   N   L +   +  +  +      P   ID  L 
Sbjct: 410 EELLTCKDLLNKFGGHPMAAGLSLNENNIDLLREGLNR--NTKLTEEELIPKITIDLPLV 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +N  +I+ LE   P+G GN  P+F   N       V+      L++  ++     + 
Sbjct: 468 LENINYDMINDLELLEPFGKGNSKPLFGAKNVNAVKAMVLGQNKNVLKIKLKTTSGRVID 527

Query: 543 AIAFRVYGTPLGEFLMQSRGK-------------RMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +I F            +   +              + +  +  +N + G+   Q+ + + 
Sbjct: 528 SIYFGDIEEFEQYITKKYNYEELQKLYGGEFNSVNLDLVFYPSINEYNGNISIQIVIQNY 587

Query: 590 S 590
            
Sbjct: 588 R 588


>gi|85708498|ref|ZP_01039564.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. NAP1]
 gi|85690032|gb|EAQ30035.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. NAP1]
          Length = 572

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 234/566 (41%), Positives = 336/566 (59%), Gaps = 12/566 (2%)

Query: 32  AITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           A +Q      +V ++L+ R V+ D       P++R  +PDP    D ++AA RI QA+ N
Sbjct: 9   AASQDLDRS-VVTQLLMTRGVAADEVAKHAKPTMREFLPDPSEFRDMEQAAERIAQAVLN 67

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            E+I I+GDYDVDGA S AL++  L    V A  YIPDR+++GYGP+   + K   +G+ 
Sbjct: 68  EEQITIYGDYDVDGATSSALLVDLLRSLGVEAGYYIPDRLLEGYGPSGEALVKLAEDGSS 127

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS---GQGH 208
           LI+TVDCG+ +++AL  A + G+DVIV+DHH+  +E  P  ALVNPNRLD+       GH
Sbjct: 128 LIVTVDCGAMAHEALTMARDAGVDVIVVDHHKCAAELPPTAALVNPNRLDESDLAASHGH 187

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
           L A GV FL+ + + R LR           DL+SLLDLVAL TV DV  L GLNRA+V +
Sbjct: 188 LAAVGVAFLLAIALVRTLRAKGFFESRREPDLMSLLDLVALGTVADVAALHGLNRAFVSQ 247

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           GL V  R+   G+ ALI+   +     A +LG+ +GP INAGGRIGES LG RLL + D+
Sbjct: 248 GLKVLARRDRIGMAALIDASRLKRAPIASDLGFALGPRINAGGRIGESTLGVRLLTTSDA 307

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
           +E   +A +L  LN+ RR +E+ + E AEA++  Q       +V V+  D WHPG++G++
Sbjct: 308 EEAREIAEQLSALNEERRAIEAEVQEAAEAQLEGQ----HNMAVQVLAADGWHPGVIGIV 363

Query: 387 AARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG 445
           AAR+KEK G+PS  I+    DG G GSGRSI G D+G  +  A EEG+LV GGGHAMAAG
Sbjct: 364 AARIKEKTGKPSIVIALDPADGTGKGSGRSISGVDLGAAIIAAREEGLLVAGGGHAMAAG 423

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+ +       +F  +     V     + V ++D  L    +   L++ LE+AGPYG G
Sbjct: 424 LTIAQDKLSAFTEFLDERLARDVERARISQVMQLDLSLAPGGLTPDLVNTLEAAGPYGVG 483

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM-QSRGKR 564
            P P  A    ++ +  +V   HL++     D  + +AIAFR   T + + L+ +S+G++
Sbjct: 484 WPAPRVAVGPVRIVNADIVGKDHLRVIASGGDGRSFKAIAFRAAETEMAQTLIHRSKGRQ 543

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590
            H  G + ++ W      +L + DA+
Sbjct: 544 FHFAGRVKIDDWGPRPAAELHLEDAA 569


>gi|239617855|ref|YP_002941177.1| single-stranded-DNA-specific exonuclease RecJ [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506686|gb|ACR80173.1| single-stranded-DNA-specific exonuclease RecJ [Kosmotoga olearia
           TBF 19.5.1]
          Length = 1047

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 176/579 (30%), Positives = 303/579 (52%), Gaps = 18/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             WV L       +   + +   I   +A++LVNR ++    A  +LNP  R L+ DP +
Sbjct: 3   KEWVLL--NADGTQVNHLVEYLGIEAFLAKLLVNRGITDVTEALKYLNPD-RTLLHDPFL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA + I++A    + I++FGDYDVDG  S AL+   +     N + YIP R+ +G
Sbjct: 60  MKDMKKAVKTIIEAGERGDSIVVFGDYDVDGVTSTALLYLAMKKMGFNVSYYIPLRLEEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + +E+  ++G +L+ITVDCG TS+D +++A   G+ V+V DHH+VK +   A A+
Sbjct: 120 YGLSRAAIEELYSQGHRLLITVDCGVTSFDEIEFAKKLGLKVVVTDHHEVKDKLPLAEAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R DD      L   GV F +L  +   LR      +  +    LD+VAL T+ D+V
Sbjct: 180 VNPKRPDDNYPFKGLAGVGVAFKLLSALNETLR------MPLNPEDYLDIVALGTIADIV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL   NR  V +G    +++   GLK L+  + I+   +TA+++ + I P +NA GR+  
Sbjct: 234 PLRDENRFIVREGTKKIQKEPLLGLKILLSYLRINPDNLTAQDIAFKIAPKLNAAGRMDS 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + +   LLIS+D  +    A +L   NQNR+++E+ + EQA  ++ +    ++   V+V+
Sbjct: 294 AVVALELLISEDKAQAMRTASRLLQHNQNRQMIEAKIFEQATKEIESNV-SMKDNFVVVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G++G++A+RL  ++ RP F IS  + G+G GS RS  G  I  +++      I
Sbjct: 353 SGENWHLGVLGIVASRLVAQYNRPVFLISTSD-GEGKGSARSPSGISIISLLNK--TADI 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH MAAG ++++           +   +I    + T   ++D VL   +++   +
Sbjct: 410 LDEYGGHEMAAGFSIKKEKIPEFRKRLNEAYMDIYGEELPTYKIEVDDVLTLESISPETL 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGT 551
             ++   P+G  NP P F F    ++  +       H++M   S + +TL A+ F + G 
Sbjct: 470 KKIDMLRPFGHSNPEPKFLFKGLNIERTKSFGSGGGHIKMILRSGERKTL-AVGFGMNGL 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 ++    ++     +  +   G +  +L ++DA 
Sbjct: 529 FDEFKYVKPNLLKLDAVASIKQDNGYGIQGMKLSLVDAR 567


>gi|308180902|ref|YP_003925030.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046393|gb|ADN98936.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 778

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/590 (30%), Positives = 284/590 (48%), Gaps = 25/590 (4%)

Query: 16  FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            +WV  L           + +  ++  +VAR+L+ R + + + A  FL+   + L+ DP 
Sbjct: 6   KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            + D +KA  RI +AI   ++I I+GDYD DG  S ++M   L     N N YIPDR  D
Sbjct: 65  TMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN +  ++ I  G +L +TVD G      +     QGIDV+V DHH++ +E   AYA
Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +     G L  AGV F V   +   + ++                A+ TV D+
Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           V L G NR  V  GL V ++   PGL ALI+    I   +T  N+G+ I P +NA GR+ 
Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL + D +    LA +++ LN+ R+ +   +   A  +   Q  + +    +V
Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           + G  WH G++G++A+ + E  G+P+  ++ ++DG+  GSGRS+E +++   +    E  
Sbjct: 352 ITGHGWHEGVLGIVASHVVETSGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LV  GGH MA GLTV       L +  +  A +   A        IDG L  +   +A 
Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEAAAVSQQLADNAQVSLPIDGTLPLAEATLAT 469

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  +++  P+G  NP P+F      +   R +     HL++      + T+ AI F + G
Sbjct: 470 LADIQALAPFGTDNPAPLFELVPTTVPQARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           T L     Q+    + + G L  N W G  + Q+ V D +         +
Sbjct: 528 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 575


>gi|220916521|ref|YP_002491825.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954375|gb|ACL64759.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 573

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/589 (34%), Positives = 293/589 (49%), Gaps = 25/589 (4%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69
              +G RWV           LA      +  + ARVL  R       A+ FL   +  L 
Sbjct: 2   SGATGKRWVEAAVDAARAAQLAGA--LDLHPLAARVLAARGHADPAEAEAFLAARLADL- 58

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  +   D A  RIV+A+   E+I  +GDYDVDG  S AL+  FL     +   Y P 
Sbjct: 59  PDPFRMKGMDAAVERIVRALEGGERIACYGDYDVDGVTSTALLCGFLRAAGADVVTYTPH 118

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+V+GYG N   +     +G +L++T+DCG TS D ++ A   G+D +V+DHH V  E  
Sbjct: 119 RLVEGYGLNGDAVRSLAAQGVRLLVTLDCGITSVDEVRVAAGLGVDTVVVDHHTVPVELP 178

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVA 246
            A A++NP++         L A GV F + + + R LR+  +        +L  +LDLVA
Sbjct: 179 AAAAILNPHQPGCAYPSKDLAAVGVTFALAMALRRRLRERGRFGPARPEPNLKEVLDLVA 238

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304
           L TV DVVPL+G NR  V  GL        PG++AL         +P+TA  +G+ + P 
Sbjct: 239 LGTVADVVPLVGANRILVRWGLEQLATSRRPGVRALKRVAGIADGTPVTAGQVGFRLAPR 298

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+ ++  G RLL+S D+   + LA +LD  NQ R+ +E  +LEQA A    +   
Sbjct: 299 INAAGRLDDAGRGVRLLLSGDAAAAQALADELDRENQARQEIERRILEQALADAAARVAA 358

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
             +  V  +  D WH G+VG++A+R+ E+F RP+  ++  EDG G GSGRSIEGF +   
Sbjct: 359 GARGLV--LARDGWHAGVVGIVASRVVERFHRPAVLVA-LEDGAGKGSGRSIEGFHLYDA 415

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           ++     G L + GGH  AAG+TVER         F+  A   +      P  +IDG + 
Sbjct: 416 LAAC--SGHLARFGGHRHAAGVTVERAQVEPFRAAFEAHAAATIADEDLVPRCRIDGWVG 473

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQA 543
            + V     + L   GP+GAG+P PVFA      ++  V    AHL++         L A
Sbjct: 474 DAEVTEDAAEALGRLGPFGAGHPEPVFALRGAAARARTVGAGGAHLKLAL----GRGLDA 529

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           I F +           + G  +     +  + W G++R QL++ D  P 
Sbjct: 530 IGFGMGDR------APACGGPVDAAFTIGFDEWDGTRRLQLKLKDLRPA 572


>gi|94309983|ref|YP_583193.1| exonuclease RecJ [Cupriavidus metallidurans CH34]
 gi|93353835|gb|ABF07924.1| ssDNA exonuclease, 5' --> 3'-specific [Cupriavidus metallidurans
           CH34]
          Length = 566

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/572 (30%), Positives = 264/572 (46%), Gaps = 24/572 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
              A A+     +   +AR+L  R V        L   +  L P P  +     AA  + 
Sbjct: 11  DEHAKALAAS-GLHPTLARILSARGV---AQPSELATDLPELAP-PASMKGIGHAAEYLA 65

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI  + K++I  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E   
Sbjct: 66  DAIAANRKLLIVADYDCDGATACAVGVRGLRMLGARVDYIVPNRFEYGYGLTPEIVELAA 125

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
            +   +I+TVD G  S D +  A  +GIDV+V DHH        A  +VNPN+       
Sbjct: 126 RQHPDVIVTVDNGIASVDGVAAANARGIDVVVTDHHLPGETLPEAAVIVNPNQPGCEFPS 185

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
            +L   GV+F VL+ +   LR+           L +LLDLVAL TV DVV L   NR  V
Sbjct: 186 KNLAGVGVMFYVLLALRAELRRRGVYTQATQPPLQTLLDLVALGTVADVVKLDTNNRILV 245

Query: 265 VKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +GL   R  + +PG+ AL       +      +LG+ +GP +NA GR+ + +LG   L+
Sbjct: 246 AQGLKRMRAGRMHPGVAALFRAAGREASRANTFDLGFGLGPRLNAAGRLADMSLGIECLL 305

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHP 380
           +DD+     +A +LD +N+ RR +E+ M ++A   +      +       + V  D WH 
Sbjct: 306 TDDANRAWEIAQELDGMNRERRDIEAGMQQEALQILEQPLAGLDPTSRHTVSVFHDTWHQ 365

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           G++G++A+RLKEKF RP+   +  ++    GSGRSI GF +   +        G+LVK G
Sbjct: 366 GVIGIVASRLKEKFHRPTITFAPGDEEHIKGSGRSIPGFHLRDALDLVSKRHPGLLVKFG 425

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLTV   +F      F++     +       V + DG +  +  +   + +LE 
Sbjct: 426 GHAMAAGLTVRAKDFDTFVSAFEEVGREWLTDDQLARVIETDGDIEDACFSPEFVTLLE- 484

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
              +G G P P F      +    V+   HL++    + S+   AI F       G   M
Sbjct: 485 GQVWGQGFPAPTFCGE-FDVLRQTVLKGKHLKLQL-GRGSQRFDAIWFNHADALDGASAM 542

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   V   L  N + G  R QL +  A 
Sbjct: 543 --------VAYRLDNNTFNGMTRVQLVIEHAQ 566


>gi|297616953|ref|YP_003702112.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144790|gb|ADI01547.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 951

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/579 (31%), Positives = 298/579 (51%), Gaps = 23/579 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W     +        I +   I +++AR+L  R + + + A+ F++  +  L  DP +L 
Sbjct: 7   WTVKTAEN--RVIREIQESLGISEVLARLLYLRGIRTREEARLFIDGGLDDLC-DPFLLP 63

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D   A  R+ +A    EK++I+GDYDVDG  SV ++  FL +  V  + YIP+R  +GYG
Sbjct: 64  DLAAAVNRLEKARQYREKVLIYGDYDVDGICSVVMLKEFLDYLGVENSYYIPNRFSEGYG 123

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   +++ + +  QL++TVDCG +S   ++ A   G+DV+V DHHQ   +  PA A+VN
Sbjct: 124 LNEEAVKEAVQKQYQLLVTVDCGISSCREIELAAGLGLDVVVTDHHQPPEQLPPAVAIVN 183

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P  + +  G   L  AGVVF ++          +     +D    LDLV LATV D+V L
Sbjct: 184 PKLVQEP-GLQELAGAGVVFKLVTAWA------DIAAPEYDKTKWLDLVCLATVADIVAL 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
           +G NR  V  GL    +   PGL+AL++   ++   + A ++GY++ P +NA GRIG+++
Sbjct: 237 LGENRLLVKAGLEFVAKTERPGLRALLDESGLNGKSLKAWHIGYVVAPRLNAAGRIGDAD 296

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           +   LL++ D  +   LA  L   N+ R+ +E+ +L+QA  +V     DI+   V+VV G
Sbjct: 297 VAVELLLTQDPGKGLDLARFLIQQNRQRQEVEAQILQQATKEV-ADSADIEAQRVLVVAG 355

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           D WH G++G++A+RL E+FGRP+  IS++ED  G GSGRS++GFD+ +         IL 
Sbjct: 356 DGWHQGVIGIVASRLTEQFGRPTILISWDED-YGKGSGRSVDGFDLYQA--LCQCSHILN 412

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGL +ER  F    +   + A ++  +       +ID  +    ++  L++ 
Sbjct: 413 RFGGHRYAAGLILERARFHEFREEINRVAASMTGSAGLVQRLEIDCEVALDDIDCQLLNE 472

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G GNP P        L  +  V     H +          ++AIAF       
Sbjct: 473 LAMLEPFGEGNPVPNLLLRRSHLSDLMWVGKNSEHAKFWV-DNGKRKIEAIAFNAKIEKE 531

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            ++        + +     ++ + G  R  L+V D  P 
Sbjct: 532 VDYSSF----LVDLVFQPELDVYNGDTRLVLKVRDMKPS 566


>gi|313672628|ref|YP_004050739.1| single-stranded-DNA-specific exonuclease recj [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939384|gb|ADR18576.1| single-stranded-DNA-specific exonuclease RecJ [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 586

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/580 (30%), Positives = 282/580 (48%), Gaps = 16/580 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
           +RW+     E     L +     +P  +  VL+NR  +      +F    +   M DP +
Sbjct: 15  YRWLYKKADEKKIIDLKLL-YPELPKSILEVLINRGFTNKKEIDEFFEAPLSG-MIDPFL 72

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  KA +R+V AI N EKI I+GDYDVDG  + +LM  FLS  +   + YIP+RI +G
Sbjct: 73  LKDIHKAVKRVVHAIKNREKICIYGDYDVDGITATSLMYEFLSSITPLVDYYIPNRIEEG 132

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYA 193
           Y  N   + +   +  +++ITVDCG TS D + YA + G+D IV DHHQ        AYA
Sbjct: 133 YSLNIDALNELKKKDVKVVITVDCGITSIDEIDYAKSIGLDTIVTDHHQLSDKLPSSAYA 192

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP +  D     HL   GV F  ++ + + + +         L   LDLVAL T+ DV
Sbjct: 193 IINPLQPGDAYPFKHLSGVGVAFKFVLAL-KYVIEKQFDIKLPPLKYFLDLVALGTIADV 251

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           VP+IG NR +V  GL +      PG+  L +    IS+ +T+ N+GY + P INA GR+G
Sbjct: 252 VPMIGENRIFVKHGLKLLENSPRPGIAELKKISGLISTDLTSANIGYSLAPRINAVGRLG 311

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +S    +LLI+ +  E +  A +L+  N+ R+ +E A+L++   K+  +  + ++   I+
Sbjct: 312 KSETSVKLLITKNQNEAKWFAEELETENRYRQELEKAVLKETIEKIERKKLN-ERYKSII 370

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WHPG++G++A+RL E++ +P+  +S  ++    GS RSI   DI   +       
Sbjct: 371 MYSKNWHPGVIGIIASRLVERYSKPAIVLS-IDNDLAKGSARSIPNIDIFSFLK--TIPD 427

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L++ GGH  AAGL +   N   L      +     P     P   ID  LN   +N  L
Sbjct: 428 LLIEFGGHKYAAGLKLYTKNIRHLQRKLDDYIEKNSPNESLIPEIVIDAFLNPEDINEDL 487

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYG 550
           +  +    P+G  N  PVF      K Q   ++      +  F  ++    + + F +  
Sbjct: 488 VKYINKLRPFGNTNSEPVFCMQKVKKAQEFSIMGKEKNIIKGFIGKNDSFFEVVGFNMGE 547

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  +        +   + +N W G    QL++ D  
Sbjct: 548 Y----RDLIRSCDTFDIVFTIDINNWMGGSNIQLKLKDIK 583


>gi|313206356|ref|YP_004045533.1| exonuclease recj [Riemerella anatipestifer DSM 15868]
 gi|312445672|gb|ADQ82027.1| exonuclease RecJ [Riemerella anatipestifer DSM 15868]
 gi|315023704|gb|EFT36708.1| Single-stranded-DNA-specific exonuclease recJ [Riemerella
           anatipestifer RA-YM]
 gi|325336199|gb|ADZ12473.1| Single-stranded DNA-specific exonuclease [Riemerella anatipestifer
           RA-GD]
          Length = 580

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/583 (26%), Positives = 269/583 (46%), Gaps = 24/583 (4%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
             +W+    +       A+        + +++LV R +     A++F  P++  +  +P 
Sbjct: 13  NQKWIYKP-EPSEEVVDALISSIGYGTLESKILVLREIDNYQKAREFFKPNLEDIH-NPF 70

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRI 131
           ++ D   A  RI  AI N EKI+++GDYDVDG  +VALM  +LS        + YIPDR 
Sbjct: 71  LMADMQNAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKKYLDFYIPDRN 130

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +   ++     G  LII +DCG  + D + YA   GID I+ DHH        A
Sbjct: 131 TEGYGISKEGIDFAKENGFSLIIALDCGIKAIDKIDYAKELGIDFIICDHHLPGENIPKA 190

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+++P R D       L   GV F +   +  I R       + +L  L DL+A++   
Sbjct: 191 VAVLDPKRTDCRYPFKELSGCGVGFKLCQGLNNIYRI-----PDEELYELTDLLAISIAA 245

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D+V + G NR     GL   R+  N G++ LI +  + +     N+ + I P INA GRI
Sbjct: 246 DIVSMTGENRVLAKLGLKTLRKTRNLGIRLLIPKEKL-ATFDISNIVFEIAPKINAAGRI 304

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   L++SD+ +    +   +  LN +RR M+ +    A  +V+       Q +  
Sbjct: 305 SHGKAAVELMVSDNLKHATQIVENILNLNDHRREMDMSSTTAALQQVID--TQQIQNATT 362

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV G  W+ G++G++A+RL E + +P+   +   +G+ + S RS+  FD+   +      
Sbjct: 363 VVYGSDWNKGVIGIVASRLTETYYKPTVVFTDGNNGEIVASARSVSDFDVHAALEEC--S 420

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            + +K GGH  AAGL++E+  F    + F+K     +      P   ID V++   +N  
Sbjct: 421 DLFLKFGGHPAAAGLSMEKEKFELFKEKFEKTVAKNIKEHQKEPSITIDTVVDIDDLNKD 480

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQDSET-LQAIAFR 547
             +      P+G  N  P+    N  +   ++ +     H++   ++ +++  ++ + F 
Sbjct: 481 FYNFHRKLAPFGPHNMKPILVLKNLNISGHVKQMGKDNSHIKFYIQNPNNKRNIECVGF- 539

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                LG F  + R K   +   +  N+W+G+    L +    
Sbjct: 540 ----KLGHFADEFRNKTFDLAFTVEENHWKGNVTYYLNIKGVK 578


>gi|94971198|ref|YP_593246.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553248|gb|ABF43172.1| exonuclease RecJ [Candidatus Koribacter versatilis Ellin345]
          Length = 579

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/585 (28%), Positives = 276/585 (47%), Gaps = 28/585 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           RW         + A  ++ +  I  +VA +L  R +   D A  FLNPS+  L   P  +
Sbjct: 2   RWTQRPF--DFSVASRLSAEANISPLVAVLLAARGIKYSDEAWMFLNPSLDALH-SPYEM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D A  R++ AI   E+++I+GDYDVDG  +  ++   +  C   A  ++P R+++GY
Sbjct: 59  LGMDAAVERLMAAIAKKEQVLIYGDYDVDGTTATVILKTAIEICGGRAEFHVPHRLLEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYAL 194
           G    ++EK   +G +LII+VD G  ++ A + A+  G+D+IV DHH         A A+
Sbjct: 119 GMRDEVIEKAAADGIRLIISVDTGIRAFAAAETASRLGLDLIVTDHHLPGADGVPKALAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NPN+        HLC AGV F V   +     +   +P      S L + A+AT+ D V
Sbjct: 179 LNPNQTGCDYPCKHLCGAGVAFKVAQALLEKSDRARLIP------SFLKMAAIATIADAV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL G NR +V  GL   R+  N GLK L+    I    ++ +++ + I P +NA GR+  
Sbjct: 233 PLTGENRVFVSLGLEGLRKPVNAGLKELLALCRIDGRTLSTQDVAFRIAPRLNAAGRMDV 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     L  + D++  + +A  L+ LN +R+  E+ ++   E ++       +     V+
Sbjct: 293 ARDVVELFTTRDAKHAKDVAQHLNKLNGDRQEEEARIMAAIEKQL-ADDASFKDRYSFVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           +G  WH G++G+ A+R+ ++  RP+  I+  E G+  GSGRSI  F +   +       +
Sbjct: 352 DGAEWHRGVIGICASRVVDRVHRPALVIARHE-GEAHGSGRSIPSFHLLNALESC--ADL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             + GGHA A G  +      +L +  + +A   +      P    D  L  S V+  L 
Sbjct: 409 FSRYGGHAHAVGFALPEDRLPQLREKLEAYARQHLKPADFVPEMVYDTELPLSDVSEKLY 468

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDS----ETLQAIAFRV 548
            ML+   P+G  NP PVF     +L    R +   H++M    Q +     + +A+A+R 
Sbjct: 469 LMLQKLEPFGMSNPQPVFVSRGARLAGPARTLKEKHVKMRLAPQSNGGFQRSFEALAWR- 527

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVN---YWRGSKRCQLRVLDAS 590
               L      + G  + V   +  N    + G    QL + D +
Sbjct: 528 KNEKLQAEPPLNMGDLLDVAFTIDHNDHPDFGG---LQLILCDWA 569


>gi|325687685|gb|EGD29706.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK72]
          Length = 740

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 173/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVDRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A+  A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   +    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGVQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  + ++        V
Sbjct: 291 LDDPNPAIELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDSK------RPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L    V  +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELRLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    +D    + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISKED-AAFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|114566343|ref|YP_753497.1| single-stranded DNA-specific exonuclease-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337278|gb|ABI68126.1| Single-stranded DNA-specific exonuclease-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 932

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/577 (32%), Positives = 296/577 (51%), Gaps = 21/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
             W++    E I     I ++  I  ++AR+LV R +S  + A  FL   +  L  DP  
Sbjct: 2   RNWINGKYDETI--VEKIAEELGISCLLARILVKRGISETEEANRFLYGKLEDL-NDPFQ 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D A  RI QAI   EKI+++GDYDVDG  S+ +++  L     N + Y+PDR ++G
Sbjct: 59  LKDMDLAVARIEQAIAAGEKIVVYGDYDVDGVCSIVILLECLQLLGANCSYYVPDRFLEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +EK  +EG QL+ITVDCG +S    Q A + G+D+I+ DHH+   +  PA A+
Sbjct: 119 YGLNSDAIEKLASEGCQLLITVDCGISSLAEGQLACDLGMDLIITDHHRPLDKLPPAVAI 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP  L   +G   L  AGV F +   ++R   +         L + L+LVALATV D+V
Sbjct: 179 INPK-LGGGAGSSDLAGAGVAFNLAAALWRGRMEQ------EKLYNWLELVALATVADIV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL   NR  V  GL    +    GL+AL+    +    +   ++ +++GP +N+ GR+  
Sbjct: 232 PLRSDNRIMVKYGLKKIGQTSRKGLRALLRETALEGKNLRTWHIAFVLGPRLNSAGRLNS 291

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LL++ D +    +A  L  +N+ R+ +E  +  +A A++  Q  D+++  ++++
Sbjct: 292 ARNSIELLLAQDEKRAASMAAFLCRVNEERKRIEETIFREAVAEI-EQHIDLEKDPILLL 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G++WH G++G++A+RL E + RP   IS  E   G GS RSI G DI    +     G 
Sbjct: 351 GGEKWHDGVIGIVASRLNEHYRRPCILIS-WEGDCGRGSARSIAGIDI--FAALDYASGF 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH MAAGL +ER NF    +   ++A     + +     KID  +  + +N AL+
Sbjct: 408 LQQFGGHKMAAGLRLERRNFPAFKEKILEWAATQELSSLKPSERKIDAEIKPADINEALL 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             LE   P G GNP P+F      + S  ++         +++  + L+ IAF       
Sbjct: 468 KELELLQPCGEGNPVPLFLLRQVSINSAALIGKGREHFKIKTEP-DELEGIAFNQAQY-- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +  R     +   L  N ++G KR QL+V D  
Sbjct: 525 --MELPWRNSCQDLLFELTENEYQGRKRIQLKVKDMK 559


>gi|188589880|ref|YP_001920145.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500161|gb|ACD53297.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 588

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/601 (28%), Positives = 291/601 (48%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW     +        I++K+ I +++ R+++NRN+  D   K+++NP+      DP  +
Sbjct: 4   RWFVKNIKADY---KNISKKYGISELITRLMINRNIVEDDMIKNYINPNYSNFH-DPYEM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KAA+ + + I   EKI I GDYDVDG  SV ++   L  C  N +  IPDRI DGY
Sbjct: 60  KDIEKAAKILKEKIELKEKIRIIGDYDVDGVISVYILYTALKKCGANVDYEIPDRIKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N  ++ +  N+    ++T D G ++ + ++YA   G+ VIV DHH +   E       
Sbjct: 120 GINKKIILEAKNDEVDTLLTCDNGISAIEQIKYAKELGMTVIVTDHHDIPFVEDEKGDRI 179

Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  +++NP +++       +C AGV F ++ ++Y  ++         +L  L++ V
Sbjct: 180 FISSEADSIINPKQIECGYKFDKICGAGVAFKLIEVLYEKMKISK-----EELYRLIEFV 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV LI  NR +V  GL +     N GLK L++   +    I+  +LG++IGP 
Sbjct: 235 AIATVCDVVDLIDENRIFVKNGLKMINNTTNLGLKYLMKETKMDGKEISTYHLGFVIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +  G +LL+S D +E   LA +L  LN  R+ M S  +E+A   +  +   
Sbjct: 295 INASGRLDSAKKGLKLLLSQDEEEALNLAKELVELNDERKSMTSEGVEKAIEII--EGST 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   + V+   + H  + G++A R++EK+  P+  ++  E+G   GSGRSIE +++   
Sbjct: 353 MKDDKIFVIYIPQVHESLAGIIAGRIREKYNVPTIILTKAEEGV-KGSGRSIEEYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +L K GGH MAAGL++   N   L +   +  +  +      P   ID  L 
Sbjct: 410 EELLTCKDLLNKFGGHPMAAGLSLNENNIDLLREGLNR--NTKLTEEELIPKITIDLPLV 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +N  +I+ LE   P+G GN  P+F   N       V+      L++  ++     + 
Sbjct: 468 LENINYDMINDLELLEPFGKGNSKPLFGAKNVNAVKAMVLGQNKNVLKIKLKTTSGRVID 527

Query: 543 AIAFRVYGTPLGEFLMQSRGK-------------RMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +I F            +   +              + +  +  +N + G+   Q+ + + 
Sbjct: 528 SIYFGDIEEFEQYITKKYNYEELQKLYGGEFNSVNLDLVFYPSINEYNGNISIQIVIQNY 587

Query: 590 S 590
            
Sbjct: 588 R 588


>gi|300869207|ref|ZP_07113801.1| exonuclease RecJ [Oscillatoria sp. PCC 6506]
 gi|300332752|emb|CBN58999.1| exonuclease RecJ [Oscillatoria sp. PCC 6506]
          Length = 745

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 287/647 (44%), Gaps = 82/647 (12%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLL 68
           + ++   RW     Q    +A  + Q+  +  ++A+VL+NR +      + FL P + +L
Sbjct: 12  DRTLPNQRWQIYPSQA--QQAEHLAQEIGLSPLLAQVLINRGIESAQGVQAFLEPELEVL 69

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
            P      D   +   + +AI   EKI I GDYD DG  S AL++R L       +  IP
Sbjct: 70  PPPMQDFPDLAMSVELLHEAISQGEKIAICGDYDADGMTSTALLLRSLKTLGAKVDYAIP 129

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
            R+ +GYG N  ++E+F +EG  LI+TVD G  +Y  +  A   G++VI+ DHH +  + 
Sbjct: 130 SRMHEGYGINERIVEEFKSEGVSLILTVDNGIAAYQPIARARELGLNVIITDHHDIPPQL 189

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
            PA A++NP  + + S    +   GV +++ + + + + +     +   +  +L+L  L 
Sbjct: 190 PPANAILNPKLISESSPYRGVAGVGVAYILAISLAQRMDK-----MQGLVNPMLELFTLG 244

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--------------------- 287
           T+ D+ PLIG+NR +V +GL +       G++ALIE                        
Sbjct: 245 TIADLAPLIGVNRRWVKRGLRLLPHSQLVGVQALIEVSGLVRENKPEGERLSTQNSTSSS 304

Query: 288 -------ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340
                    + +  E++G+ +GP INA GRI +  +   LL +DD       A + + +N
Sbjct: 305 AASAIKQSKNSLKPEDIGFRLGPRINAIGRISDPQIVIELLTTDDRDLALERAKQCEEIN 364

Query: 341 QNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400
           Q R+ +   +  +A A       D+QQ  V+VV    WH G++G++A+RL E++G P F 
Sbjct: 365 QRRQELCQEIEAEAIAYCEETQVDLQQERVLVVVQPGWHHGVIGIVASRLVERYGVPVFI 424

Query: 401 ISFEEDG---------------------------------KGIGSGRSIEGFDIGKMVSF 427
            ++E++                                  K  GS R I  F + + + F
Sbjct: 425 GTYEDEEEEDAESLAPEKMSISSEDLSDKIDNLSIKSVGKKIRGSARGIPEFHVFEALQF 484

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                +L K GGH  A G ++   N          FA   +      P+  ID   N + 
Sbjct: 485 CDR--LLGKYGGHKAAGGFSMPAANLEEFRTQLGIFARKSLELQHLKPLVSIDAQANFAE 542

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES--QDSETLQA 543
           +N+ L   +++  P G  N  PVF  PN ++     V     H+++TF    +    L+A
Sbjct: 543 INLDLYRQIDALQPCGIENKAPVFWTPNVRIIEQATVGKEKAHIKVTFSQDVKSIPNLKA 602

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IA+R                R+ +  HL  N + G+   +L ++   
Sbjct: 603 IAWRWREYF-------PLPPRVDIAYHLRENTYNGNTTVELELVGVR 642


>gi|117625123|ref|YP_854111.1| ssDNA exonuclease RecJ [Escherichia coli APEC O1]
 gi|115514247|gb|ABJ02322.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli
           APEC O1]
          Length = 530

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/530 (31%), Positives = 267/530 (50%), Gaps = 16/530 (3%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132
            L+  +KA   +  A     +I++ GD+D DGA S AL +  +      N +  +P+R  
Sbjct: 6   QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 65

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYG +P ++++    GAQLI+TVD G +S+  +++A + GI VIV DHH        A 
Sbjct: 66  DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 125

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248
           A++NPN  D       L   GV F +++ +   LR             +L  LLDLVAL 
Sbjct: 126 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALG 185

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSIN 306
           TV DVVPL   NR    +G+   R  +  PG+KAL+E  N     + A +LG+ +GP +N
Sbjct: 186 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDPQKLAASDLGFALGPRLN 245

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDI 365
           A GR+ + ++G  LL+ D+  E  +LA +LD LNQ R+ +E  M  +A       +    
Sbjct: 246 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRD 305

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
                + +    WH G+VG+LA+R+KE+F RP  A +   DG   GSGRSI+G  +   +
Sbjct: 306 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 365

Query: 426 SFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                   G+++K GGHAMAAGL++E   F      F +     +   +       DG L
Sbjct: 366 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPL 425

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQ 542
           + + + + +  +L  AGP+G   P P+F   + +L   R+V   HL++  E       L 
Sbjct: 426 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 484

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAF V      +    +  + + +   L +N +RG++  Q+ + +  P+
Sbjct: 485 GIAFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 530


>gi|152997761|ref|YP_001342596.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp.
           MWYL1]
 gi|150838685|gb|ABR72661.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp.
           MWYL1]
          Length = 610

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/564 (29%), Positives = 257/564 (45%), Gaps = 20/564 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
              + RV ++R+V      D+  P +  L PD   L D   AA+ +  AI   +KI+I G
Sbjct: 56  SATLQRVFLSRDVVSVAQLDYRLPHL--LRPD--SLFDLTTAAKILADAIVAGQKILIVG 111

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S +L +  L           +P+R   GYG  P ++E        +++TVD 
Sbjct: 112 DFDADGATSTSLGILALEAMGAIAPEYLVPNRFEFGYGLTPEIVEVAQERSPDVLVTVDN 171

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G  S D +  A + G+ V+V DHH        A A+VNPN  +      +L   GV+F V
Sbjct: 172 GIASIDGVLAAKSYGMKVVVTDHHLPGDTLPNADAIVNPNHPNCGFPSKNLAGVGVIFYV 231

Query: 219 LVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           +  +   L   N           +   LDLVAL TV DVVPL   NR  V +G+   +  
Sbjct: 232 MSALRAELNSRNWFADQHIPEPKMADYLDLVALGTVADVVPLDANNRILVQQGIKRIQAG 291

Query: 275 -GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG+ AL+E        + A +LG+++GP +NA GR+ + ++G   L++    +    
Sbjct: 292 LARPGILALLEVGRRDYTQLKASDLGFVVGPRLNAAGRLDDMSIGIECLLAVHPHQARDY 351

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD  N+ R+ +ES M EQAE  + +  D+ Q   + +      WH G++G+LA+R+K
Sbjct: 352 AQQLDQFNRERKAIESDMKEQAELVLESLLDEEQDMPNGMCFYDADWHQGVIGILASRMK 411

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           +K  RP  A +   + +  GS RSI G  I   +         +L K GGHAMAAG++++
Sbjct: 412 DKCHRPVIAFAKVGENELKGSARSIPGVHIRDALDLLAKRYPQLLSKFGGHAMAAGMSIK 471

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             ++      F       V           DG L     +++  + +  +GP+G   P P
Sbjct: 472 ESHYEAFQLAFDAIITEWVTPEQLEATLLTDGPLAPEDFSLSFAEQVRLSGPWGQMFPEP 531

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F      +   R+V   HL++          L AI+F V            +  +  + 
Sbjct: 532 CFDG-VFDILQQRIVGEKHLKLMVREPSSGLLLDAISFFVDLNQWP----NDKVTQARLV 586

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN +RG +  QL V    P 
Sbjct: 587 YKLDVNEFRGQRNLQLLVDYLEPA 610


>gi|220934632|ref|YP_002513531.1| single-stranded-DNA-specific exonuclease RecJ [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995942|gb|ACL72544.1| single-stranded-DNA-specific exonuclease RecJ [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 574

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/561 (33%), Positives = 272/561 (48%), Gaps = 21/561 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           D++ARVL  R V      D+    ++ L   P +L+  + A  R+ +A+ + E+I++ GD
Sbjct: 22  DVLARVLALRGVLDPAQCDY---GLKGLAA-PHLLSGIEPAVERLERALRSDERIVVVGD 77

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S A+ +R LS     + +  +P+R   GYG  P ++       A L+ITVD G
Sbjct: 78  FDADGATSTAVALRALSALGARDVHFRVPNRFEYGYGLTPEIVSVLRPLDAGLLITVDNG 137

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S D +  A + G+ V+V DHH   +    A ALVNPN   D     HL   GV+F V+
Sbjct: 138 VSSLDGVAAARHAGMSVLVTDHHLPGTSLPEADALVNPNLPGDPFPSKHLAGVGVIFYVM 197

Query: 220 VLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ- 274
           + +   LR             +L  LLDLVAL TV DVVPL   NR  V +GL   R   
Sbjct: 198 LALRARLRDSGWFDTRGIDEPNLAELLDLVALGTVADVVPLDQNNRILVEQGLRRIRAGA 257

Query: 275 GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
             PG+ AL+E    S     A +LG+ +GP +NA GR+ +  LG R L++DD  E   LA
Sbjct: 258 AIPGIGALLEVARRSPERSVATDLGFAVGPRLNAAGRLDDMALGIRCLLTDDPVEARALA 317

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARLKE 392
             LD LN +RR +E+ M  +A A +     D       + +   +WH G++G+LAAR++E
Sbjct: 318 AALDDLNADRRDIEAQMQAEALAGLEALPVDSWGDRYGVCLYEPQWHQGVIGILAARIRE 377

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450
           +  RP  A +   DG+  GS RSI G  I   +    A   G++ K GGHAMAAGL++  
Sbjct: 378 RIHRPVIAFADAGDGQIKGSARSIPGLHIRDALDDVAARHPGLISKFGGHAMAAGLSLPL 437

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N     + F       V       V   DG L    +++     L  AGP+G G P PV
Sbjct: 438 ENLQAFSEAFDHTVAARVSPEDLEGVVHSDGELTPGEISLDTATRLRDAGPWGQGFPPPV 497

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     ++   RV+   HL++          +  IAF V      E L      R+ +  
Sbjct: 498 FDGE-FEILDRRVLKERHLRLQLRPAPGAPPITGIAFNVDWDDWPEAL-----DRVRLAY 551

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L VN ++G    QL +    
Sbjct: 552 RLEVNEYQGLVSPQLMIEHVE 572


>gi|221068832|ref|ZP_03544937.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas
           testosteroni KF-1]
 gi|220713855|gb|EED69223.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas
           testosteroni KF-1]
          Length = 579

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/588 (29%), Positives = 272/588 (46%), Gaps = 29/588 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +      +   A+ Q   I  ++A++   R V        L+ +   L+P P  L   
Sbjct: 2   KIIPRSIPNDSVSALLQA-KIHPLLAQLYAARGVCSADE---LDDAPARLLP-PSGLRGI 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
           D A + +  AI   +++ I  DYD DGA + A+ +R L      +A+  +PDR+VDGYG 
Sbjct: 57  DAAVQLLADAIAAQKRLCIVADYDCDGATACAVGLRGLRMLGATHADYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
              +  +    GA ++ITVD G  S + +  A   G+ V+V DHH       PA A+VNP
Sbjct: 117 TAPISRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPPADAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F VL+ +   LR   +   +    L  LL LVAL TV DVV 
Sbjct: 177 NQPGCEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVK 236

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313
           L   NR  V  GL   R+    PG++AL E       + +  + G+ +GP INA GR+ +
Sbjct: 237 LDANNRRLVALGLKQIRKGSMQPGIRALFEASGRRFDMASTIDFGFALGPRINAAGRLAD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372
             +G   L ++D    + LA  LD +N+ RR +E +M E A       C+D +     I 
Sbjct: 297 MTIGIECLTTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAIS 356

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA 428
           V    +H G+VG++A+R+K+K  RP+F  +       + +  GSGRSI GF +   +   
Sbjct: 357 VFDPDFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV 416

Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                G++++ GGHAMAAG T+   +F      F + A   + A   T   + DG L+  
Sbjct: 417 SKRHPGLILRFGGHAMAAGCTITEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQ 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
            ++  LI+ +     +G G   P F     ++ S R+V   HL++      S+ +  I F
Sbjct: 477 WLDTGLIEQM-QLAVWGQGFAAPTF-SEELEITSQRLVGEKHLKLELLHHGSK-IDGIWF 533

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                            R  +   L +N WRG ++ Q  V  A   EG
Sbjct: 534 NHTD---------PLPARTTLAYRLDINEWRGERKVQFLVEAAQDFEG 572


>gi|116492891|ref|YP_804626.1| exonuclease RecJ [Pediococcus pentosaceus ATCC 25745]
 gi|116103041|gb|ABJ68184.1| exonuclease RecJ [Pediococcus pentosaceus ATCC 25745]
          Length = 773

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/581 (27%), Positives = 277/581 (47%), Gaps = 28/581 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           F W     +        +  +  +   + +++V R   + +    F++  +  ++ DP++
Sbjct: 6   FNWQV--SKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMS-IVHDPML 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  KA  RI  AI ++EKI+++GDYD DG  S  +M   L     N   ++PDR  DG
Sbjct: 63  LHDMQKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFKDG 122

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN    + FIN+   QLIITVD G    +A+++A +QG +VIV DHH++      AYA
Sbjct: 123 YGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEAYA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   +     G L   GV F V   +   + +             LDL A+ T  D+
Sbjct: 183 IIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPE-----------EFLDLYAIGTTADL 231

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           V +   NR  V  GL +       GL+ LIE   +  S    +++G+ + P INA GR+ 
Sbjct: 232 VSMTDENRFLVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLE 291

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            ++    LL + D +E   +A +++ +N  R+ + S +  +AE   L      +Q  V  
Sbjct: 292 NASRAVELLTTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIALDDEHASRQTLV-- 349

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           + G  WH G++G++A+R+ E+  +P+  +S +  +G   GSGRS+   ++ + ++     
Sbjct: 350 IAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAIN--PIR 407

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
              V  GGH MA G+TVE      L D  +K A  +       P  +ID  +N   +   
Sbjct: 408 EKCVGFGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEK 467

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549
           L+  ++  GP+G  NP P F   + +++  + +     HL+ T     ++ + AIAF+  
Sbjct: 468 LVSEMKILGPFGMNNPVPKFELEDVRVKEAKAIGKDGAHLKFTL-DDGNQNINAIAFKRG 526

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  ++ +    + + G +  N WRG+   Q    D  
Sbjct: 527 ELA---DVLNNVANPISLVGTINTNEWRGNVSVQFMTDDIK 564


>gi|254556913|ref|YP_003063330.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           plantarum JDM1]
 gi|254045840|gb|ACT62633.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           plantarum JDM1]
          Length = 778

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/590 (30%), Positives = 284/590 (48%), Gaps = 25/590 (4%)

Query: 16  FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            +WV  L           + +  ++  +VAR+L+ R + + + A  FL+   + L+ DP 
Sbjct: 6   KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            + D +KA  RI +AI   ++I I+GDYD DG  S ++M   L     N N YIPDR  D
Sbjct: 65  NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN +  ++ I  G +L +TVD G      +     QGIDV+V DHH++ +E   AYA
Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +     G L  AGV F V   +   + ++                A+ TV D+
Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           V L G NR  V  GL V ++   PGL ALI+    I   +T  N+G+ I P +NA GR+ 
Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL + D +    LA +++ LN+ R+ +   +   A  +   Q  + +    +V
Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           + G  WH G++G++A+ + E  G+P+  ++ ++DG+  GSGRS+E +++   +    E  
Sbjct: 352 ITGHGWHEGVLGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LV  GGH MA GLTV       L +  +  A +   A        IDG L  +   +A 
Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTLPLAEATLAT 469

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  +++  P+G  NP P+F      +   R +     HL++      + T+ AI F + G
Sbjct: 470 LADIQALAPFGTDNPAPLFELVPTTVPHARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           T L     Q+    + + G L  N W G  + Q+ V D +         +
Sbjct: 528 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 575


>gi|28378711|ref|NP_785603.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           plantarum WCFS1]
 gi|28271548|emb|CAD64453.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           plantarum WCFS1]
          Length = 778

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/590 (30%), Positives = 284/590 (48%), Gaps = 25/590 (4%)

Query: 16  FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            +WV  L           + +  ++  +VAR+L+ R + + + A  FL+   + L+ DP 
Sbjct: 6   KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            + D +KA  RI +AI   ++I I+GDYD DG  S ++M   L     N N YIPDR  D
Sbjct: 65  NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN +  ++ I  G +L +TVD G      +     QGIDV+V DHH++ +E   AYA
Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +     G L  AGV F V   +   + ++                A+ TV D+
Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           V L G NR  V  GL V ++   PGL ALI+    I   +T  N+G+ I P +NA GR+ 
Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL + D +    LA +++ LN+ R+ +   +   A  +   Q  + +    +V
Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           + G  WH G++G++A+ + E  G+P+  ++ ++DG+  GSGRS+E +++   +    E  
Sbjct: 352 ITGHGWHEGVLGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LV  GGH MA GLTV       L +  +  A +   A        IDG L  +   +A 
Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTLPLAEATLAT 469

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  +++  P+G  NP P+F      +   R +     HL++      + T+ AI F + G
Sbjct: 470 LADIQALAPFGTDNPAPLFELVPTTVPHARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           T L     Q+    + + G L  N W G  + Q+ V D +         +
Sbjct: 528 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 575


>gi|57234225|ref|YP_181687.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides
           ethenogenes 195]
 gi|57224673|gb|AAW39730.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides
           ethenogenes 195]
          Length = 566

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 168/580 (28%), Positives = 275/580 (47%), Gaps = 31/580 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W               +Q    P ++  +L NR + + + A  FL+P  R L  DP +  
Sbjct: 9   WKLKPAPP-----EETSQNFPYPPLITSLLYNRGIKTPEEADMFLSPD-RRLDHDPFLFP 62

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +KA  RI +A+   EK++++GD+D DG  + A++   ++    N   YIP RI +GYG
Sbjct: 63  DMEKAVSRIYKALLTGEKMVVYGDFDADGLTATAVLTTGIARLGGNVAPYIPHRITEGYG 122

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
              S +EK   EGA LII+ DCG T+   ++ A   G+DVIV DHH    E  PA+A++N
Sbjct: 123 LKISALEKHKAEGASLIISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAHAIIN 182

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P           L   GV + V+  +YR L ++++         LLDLVA+ TV D+VP+
Sbjct: 183 PKVPGSAYPFKELAGVGVAYKVIQALYRNLGRESEA------RDLLDLVAIGTVADIVPI 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
           +  NR  V +G+     +  PG+  + +   +    I  E++ +++ P +NA GR+  + 
Sbjct: 237 LDENRYLVKEGVKRLNAEPRPGIVEMAQLSRLRLGEIEPESISWIMAPRLNAAGRLEHAM 296

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G +LL S    + + LA+ L+  N  R+ +    +E+A A++     D Q    ++V  
Sbjct: 297 AGYKLLTSTAISDSQELALWLENKNTERQQLTVRFVEKARARL-----DSQSPPSLLVYS 351

Query: 376 DRWHP-GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           D   P GI GL+A RL +++ RPS  I         GS RSI  F+I  + + +    + 
Sbjct: 352 DAECPQGISGLVAGRLSDEYYRPSIVI-KTNADFATGSCRSIPDFNI--IQALSRFAPLF 408

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHA AAG T+   +          +A   +  +   P   ID   + S +  A + 
Sbjct: 409 SHFGGHAQAAGFTLPTEHLDTFIKGISAYAEESLSGVELKPFIDIDIDTDLSQLCPATLR 468

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            LE   P+G  NP PVF      +   R +     HL++  + +       IAFR +   
Sbjct: 469 ELERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGIAFRQFKEL 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            G          + +  +L ++ W G+   +L+++D +P 
Sbjct: 528 NGFLQ-----SPVDIVYNLELDKWCGTDTLRLKIIDMAPA 562


>gi|262373742|ref|ZP_06067020.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter junii
           SH205]
 gi|262311495|gb|EEY92581.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter junii
           SH205]
          Length = 566

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/560 (31%), Positives = 270/560 (48%), Gaps = 21/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V+ +   +       LL P+   L D D+A   I QAI +  +I+I
Sbjct: 20  GVPTFIAEILARRGVASEQELE--LKLKHLLAPN---LKDLDRAVEIIDQAIDHQLQIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITV 156
            GDYD DGA S ALM+  L          +PDR   GYG  P + E         L+ITV
Sbjct: 75  VGDYDADGATSTALMVLVLREMGAKVEYLVPDRFKYGYGLTPKIAELAAQTYRPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A   G+ VI+ DHH        A A+VNPN+L+       L   GV F
Sbjct: 135 DNGISSHAGVEVAQALGMQVIITDHHLTTKPTPSAEAVVNPNQLNCDFSSKSLAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +     Q NK      +   LDLVAL T  DV  L   NR  +  GL    + Q 
Sbjct: 195 YVLAKLASHRSQQNKSTS--KVAQYLDLVALGTYADVASLDYNNRILIDAGLKRIQQNQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      S + A++LG+++GP INA GR+    +G   L+++D      LA 
Sbjct: 253 RAGILALLDVAGRDASTLRAQDLGFVLGPRINAAGRMESMRIGIECLLAEDMATAYPLAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E+ M +QA   +   Q +  Q    IV+  ++WH G++G++A RLKE+
Sbjct: 313 QLNQLNVERRQVETEMKQQALIALQNVQLETDQIPPAIVMYDEQWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + +EDG    GS RSI+G  I  M+         ++   GGHA AAGLT+++
Sbjct: 373 FHRPSLVFAPDEDGIHIKGSARSIDGIHIRDMIEHVAEQYPHLVTHFGGHAAAAGLTLKK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F      F +    +  A +       DG L  +A++++ +D +E  GP+G   P P 
Sbjct: 433 AHFNEFKQLFIQTIAEM-DAELFHATIWTDGELPENALDLSTVDWIEQMGPWGQKFPFPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R +   HL++      ++++ AIAF         F        + +   
Sbjct: 492 FQGT-FKVIDFRWLKDQHLKLKLSL-GTQSIDAIAFNAVDR----FEFNPMQGFVDLVYT 545

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L  N + G+   QL+++   
Sbjct: 546 LERNVFNGNVSLQLQIVHLK 565


>gi|254361858|ref|ZP_04977992.1| recombination protein J [Mannheimia haemolytica PHL213]
 gi|153093397|gb|EDN74388.1| recombination protein J [Mannheimia haemolytica PHL213]
          Length = 573

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/561 (30%), Positives = 268/561 (47%), Gaps = 20/561 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R +        L  +++ L   P  L + ++A   ++QA     +I+I GD
Sbjct: 20  PLLNRIYQSRGIKNTQE---LEHNLKNLHR-PQQLANIEQAVDLLLQAFREKSRIIIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S +L +  L     +  +  IPDR   GYG + ++ E  + +GA L++TVD G
Sbjct: 76  FDADGATSTSLALIALRQLGFDKVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S + +    +  I V+V DHH        A ALVNPN          L   GV+F V+
Sbjct: 136 ISSTEGIALLKSHQIQVLVTDHHLPPESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVM 195

Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + +   +R+ +        +   LLDLVAL TV DVVPL   NR  V +GL   R     
Sbjct: 196 MALRSRMREQHLFENKPEPNFAELLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCR 255

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            G+KAL E      S + A +LG+ I P +NA GR+   +LG  LLI ++ +    LA+ 
Sbjct: 256 LGIKALAEVGKRDLSTLQAADLGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALD 315

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           LD LNQ R+  E  M  +A +           +QA  IV+    WH G++G+LA+R+K++
Sbjct: 316 LDSLNQTRKEFEQEMKAEALSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQ 375

Query: 394 FGRPSFAISF--EEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
           F RP  A +   EE     GS RSI G  +  ++         ++ K GGHAMAAGLT+ 
Sbjct: 376 FNRPVIAFAQESEESEYLKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIH 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           +         F +  + I+       +   DG LNA    +A  +M+   GP+G   P P
Sbjct: 436 QSKLDLFKQIFDQSINAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F      +   +++   HL++  +S+  +   AI F V      +  +    K+  +  
Sbjct: 496 SFEGE-FSILQQKLLAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSI----KKARLVY 550

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L +N +RG K  QL+V    
Sbjct: 551 RLDINEFRGEKSLQLKVEYLK 571


>gi|119505214|ref|ZP_01627289.1| single-stranded-DNA-specific exonuclease RecJ [marine gamma
           proteobacterium HTCC2080]
 gi|119458905|gb|EAW40005.1| single-stranded-DNA-specific exonuclease RecJ [marine gamma
           proteobacterium HTCC2080]
          Length = 575

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/564 (30%), Positives = 276/564 (48%), Gaps = 20/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+  NR V+       ++ +++ L+P P  L    +AA  +  AI    +++I
Sbjct: 20  GLSPLMQRLYANRGVTTADE---IDLALKGLLP-PQQLRGVAEAAELLADAIEGEARVVI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +  L    +   +  +P+R   GYG +P ++         LI+TV
Sbjct: 76  VGDFDADGATSSALAVSVLRQMGLKEVSYLVPNRFEYGYGLSPEIVALAAEREPDLIVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A   GI V++ DHH    E   A  +VNPN+         L   GV+F
Sbjct: 136 DNGISSLAGVATAQGLGISVLITDHHLPGDELPAADVIVNPNQPGCPFPSKSLAGVGVMF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL  +   LR             +L   LDLVAL T+ DVV L   NR  V  GL   R
Sbjct: 196 YVLTALRAELRDREWFERCGMAMPNLGDALDLVALGTIADVVSLDRNNRILVAAGLARIR 255

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +G PG+ AL+E    S S +++ +LG+++GP +NA GR+ +  +G   L+++ + E  
Sbjct: 256 AGRGRPGIDALLEVAGRSASELSSSDLGFILGPRLNAAGRLEDMAIGIECLLAESAFEAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389
            LA +LD LN+ RR +ES M E+A +++     D +       V    +H G+VG++AAR
Sbjct: 316 PLAQQLDDLNRERRDIESNMQEEALSQLSALEVDDKTLKFGLCVYNKTFHQGVVGIVAAR 375

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           L+E++ RP+   +   D +  GSGRSI G  I  ++     +   ++ K GGHAMAAGL+
Sbjct: 376 LRERYHRPTIVFADAGDDELKGSGRSIPGVHIRDVLDHVATMHPDLIGKFGGHAMAAGLS 435

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           + R +  +  + F       +  +   PV   DG L    + +   +M+ +AGP+G   P
Sbjct: 436 LGRKDLDQFQEAFDTAVAVALEHVPPEPVVMTDGELALEDLTLNSAEMIAAAGPWGQHFP 495

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
            PVF      +   R++   HL+   E+   E  +AIAF V      +  +     R+ +
Sbjct: 496 EPVFEG-VFAIVEQRLLKDKHLKFRLEA-GGEKFEAIAFNVDRECWPDDQIS----RVRI 549

Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591
                +N +RG +  QL +    P
Sbjct: 550 AFQPDINTYRGERNLQLMIRHLWP 573


>gi|313891968|ref|ZP_07825569.1| single-stranded-DNA-specific exonuclease RecJ [Dialister
           microaerophilus UPII 345-E]
 gi|313119611|gb|EFR42802.1| single-stranded-DNA-specific exonuclease RecJ [Dialister
           microaerophilus UPII 345-E]
          Length = 663

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/587 (28%), Positives = 286/587 (48%), Gaps = 31/587 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDP 72
           S ++W      + +       +K  I D +AR+++ R ++ +     FL+ S+  L  +P
Sbjct: 2   SKYKWNLEEKNKEVAVIPDFFKKENISDALARIMIRRGINSEDILIPFLHGSLNEL-ENP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++     A  RI+ AI  +E I+IFGDYDVDG  S +++ RF  +  VN   YIPDR  
Sbjct: 61  FVMKGMKSAVDRILIAINKNENIVIFGDYDVDGITSTSILYRFFKNLGVNVGYYIPDRET 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN + +         L+ITVDCG  +    +   ++ IDVIV DHH    E     
Sbjct: 121 EGYGPNVNAINNLAK-KYDLLITVDCGIAATKIFK-EASKDIDVIVTDHHMPPDELPDVI 178

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           ++++P++ D       +   GV + +   IY      +           ++LVAL T+ D
Sbjct: 179 SVIDPHQKDCEYHFSEMAGCGVAYSLCRAIYLKKFNKDYFND-------IELVALGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALI--------ERVNISSPITAENLGYMIGPS 304
           VV L   NR +V +GL       N GLKAL+           N    I +EN+ ++I P 
Sbjct: 232 VVSLTDENRIFVKEGLKRLINTENKGLKALLYETGILKENEENQKKMIRSENISFIIAPR 291

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GRI  + +G  LL S +  E + LA KL  +N  R+ +E  +   A+  V  +  D
Sbjct: 292 LNAAGRINHAKIGVELLTSTNDCEAKELAKKLCEINSERQKIEREIYGYAQDIVKKK--D 349

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           + +   IV+ G+ WHPG++G++A+RL + + +PSF IS ++ G G GS RSI GF+I + 
Sbjct: 350 LSKEKTIVIAGENWHPGVIGIVASRLLDTYNKPSFVISIKD-GVGKGSCRSIPGFNIYEA 408

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +       IL++ GGH MAAG +++  N     +   K+ +  +      P+ +I+  ++
Sbjct: 409 LKA--HSDILLQFGGHKMAAGFSIKEENIKLFEERMIKYTNEKITDEDCIPILEIEENIS 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQA 543
            + + +  I  L+   P+G  NP P+F      +   R +   +    F + +++  ++ 
Sbjct: 467 LNEITLDFIRSLDILEPFGCDNPKPLFLSKEILVNKTRRIGNENKHFKFSTFNNKEEIEG 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + +             ++G+ + V     ++ W G +  QL   D  
Sbjct: 527 VFWNYENNSFC-----NQGQLIDVVYEPEIHNWYG-EHVQLNCKDIE 567


>gi|323694416|ref|ZP_08108587.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           symbiosum WAL-14673]
 gi|323501497|gb|EGB17388.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           symbiosum WAL-14673]
          Length = 569

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/579 (29%), Positives = 283/579 (48%), Gaps = 29/579 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76
           W+    +   NR   I ++  I  + AR++ NR +  +     +LN ++  L  DP ++ 
Sbjct: 6   WMVQTKKADFNR---IAERFGIDPVTARIIRNRGIEGEDRINLYLNGTVGTLY-DPRLMK 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +KAA  +   I   ++I I GDYD+DG  S  ++ +         +  IPDRI DGYG
Sbjct: 62  DMEKAAAILKDKIDRKKRIRIVGDYDIDGVCSTYILYKAFLRLGAPVDYDIPDRIRDGYG 121

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-----SEEIPA 191
            N S++EK   +G   I+T D G ++Y  ++ A  +G+ V++ DHH+V          PA
Sbjct: 122 INESIIEKAAEQGIDTILTCDNGISAYSQIELAKKKGMTVVITDHHEVPLEEGKEIIPPA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+++P R +       +C A V + ++ +++             +   LL+  A+ATV 
Sbjct: 182 DAVIDPKREECSYPFPEICGAVVAWKLVQVLFAECGV-----PAKEWEELLEFAAIATVG 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           DV+ L   NR  V  GL       + GL+ L  + N+  S ITA ++G++IGP +NAGGR
Sbjct: 237 DVMRLQDENRIIVKYGLSRMEHTSSIGLRKLAAKNNLDLSQITAYHIGFVIGPCLNAGGR 296

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  + L   LL+S D +E + LA +L  LN  R+ M     E A  +V T      Q  V
Sbjct: 297 LQTAKLALSLLLSGDEEEADRLATELKELNDMRKDMTEQGTEAARLQVDTY---YSQDKV 353

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV     H  + G++A RL+E + +PS  ++  E+    GSGRSIE + +      +  
Sbjct: 354 LVVYLPECHESLAGIIAGRLREHYQKPSIVLTKGEEAV-KGSGRSIESYHM--FQKLSEV 410

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + +++K GGH MAAGL++E  N G       +   + +          ID  +  + +  
Sbjct: 411 KELMLKFGGHPMAAGLSLEEKNIGEFRRQLNE--RSGLREEDFKAKVWIDVPMPVNYMTE 468

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRV 548
            LI       P+G GN  P+FA  N ++++ RV+      +++T E ++   ++AI F  
Sbjct: 469 RLIREFRCLEPFGQGNEKPLFAQKNLRVRNSRVIGRNRNVVRLTLEEENGFAMEAIYF-- 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
            G  +     +   + M +  +  +N + G+K  Q  V 
Sbjct: 527 -GDGIAFEDERGGRRVMDIVYYPEINEYNGNKSLQAVVR 564


>gi|56752218|ref|YP_172919.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus
           PCC 6301]
 gi|56687177|dbj|BAD80399.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus
           PCC 6301]
          Length = 643

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/568 (29%), Positives = 283/568 (49%), Gaps = 23/568 (4%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIY 90
           +     +P ++A+VL+NR + +I  A+D+L P  + L PDP     D  ++   + +AI 
Sbjct: 2   LATALNLPPVLAQVLINRGLGAIADARDYLKPEQQEL-PDPREEFEDLVESVLLLEKAIR 60

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
           + ++I I GDYD DG  S AL++R        A   IP R+ +GYG N  ++E+F   G 
Sbjct: 61  SGDRIAICGDYDADGMTSTALLLRTFRQLGAKAEYAIPSRMQEGYGINERIVEEFAASGV 120

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
           ++++TVD G  +Y  +  A   G+ VIV DHH +  E  PA A++NP  L + S    L 
Sbjct: 121 RVVLTVDNGIAAYQPIARARELGLTVIVTDHHDLPPELPPANAILNPKLLPEESPYHGLA 180

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
             GV +++ + +     +         +  LL+L  L T+ D+ PL G+NR ++ +GL +
Sbjct: 181 GVGVAYVLALCVAEQFNRQ-----AELIRPLLELYTLGTIADLAPLTGVNRRWLQRGLRL 235

Query: 271 ARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             +    G++AL+E   +      +  E++G+ +GP INA GRIG+  +   LL ++D  
Sbjct: 236 LPQSQLVGVQALMEAAGVKTSDRSLKPEDIGFKLGPRINAIGRIGDPQVVIELLTTEDRD 295

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
             + LA   +V NQ RR +   + E+A A V  +  D +Q +V+V+    WH G++G++A
Sbjct: 296 RAQELAGICEVTNQERRGLCDRITEEAIAIVEAEGFDNRQTAVLVLAQPNWHHGVIGIVA 355

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447
           +RL E++G P F  S+EEDG   GS R    FD+   +       +L + GGH  A G +
Sbjct: 356 SRLVERYGVPVFISSYEEDGHLRGSARGTPEFDVFAALEHC--RDVLGRFGGHRAAGGFS 413

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   N        + FA + +P     P  +ID  L  +  ++ L +  +   P+G  N 
Sbjct: 414 LSAENLSAWRSRLEAFAADCLPVDCRRPAIQIDAELPIALASLNLFEQQQQLQPFGIAND 473

Query: 508 NPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
            P++   N  +   R +     HL++T     S+ + A+ +R    P+ E        R+
Sbjct: 474 EPLYWAKNLAILDQRRMGNGQEHLKLTLSDGQSK-VTAVYWRWGDRPVPE-------DRV 525

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            V  +L  N W   +  QL +      +
Sbjct: 526 DVAYYLRENIWNDRRELQLEIAGIRLSQ 553


>gi|317502039|ref|ZP_07960221.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331090445|ref|ZP_08339326.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|316896513|gb|EFV18602.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330401192|gb|EGG80785.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 572

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/584 (28%), Positives = 288/584 (49%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW  ++ +   +   A   K+ I  ++AR++ NR++   +    +LN +I  L  D +++
Sbjct: 3   RWYVMMKKADFSSIGA---KYNISPVIARLIRNRDIIEDEEINLYLNGTIADLY-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I   + + + GDYD+DG  +  ++   L     + +  IPDRI DGY
Sbjct: 59  KDMDKAVEILSEKIREEKPVRVIGDYDIDGVNAAYILKEGLEGLGADVDTDIPDRIKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N  L+++ +++G   IIT D G  + + + Y    G+ VIV DHHQV   EI      
Sbjct: 119 GLNKMLIDRALDDGIDTIITCDNGIAAAEEITYGRKNGLTVIVTDHHQVPFVEINKEREY 178

Query: 192 -----YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
                 A+V+P R D      +LC A V + ++  +Y ++ +D       D+  L++ VA
Sbjct: 179 LLPQADAVVDPRRPDCEYPFKNLCGAAVAYKLVEALYNVMLRD-----PEDVDYLMENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
           +ATV DV+ L G NR +V +GL + +R  N GLKALIE   I+   +   +LG+++GP I
Sbjct: 234 IATVGDVMALKGENRIFVKQGLEMLKRTKNEGLKALIECTGINPEYLNTYDLGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +   ++  MLA  L  LN +R+ M    +++A   +  +   +
Sbjct: 294 NASGRLDTAKRALELLSTRTRRDAVMLAEDLKALNDSRKEMTERGIKEAAEMI--ETTSL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V V+     H  I G++A ++++++ RP+  ++  EDG   GSGRS E +D+    
Sbjct: 352 KEDKVFVIYLPDCHESIAGIIAGKIRDRYYRPTIILTKAEDGV-KGSGRSTEEYDM--FT 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +  K GGH  AAG++++  N  R  +         +          ID  +  
Sbjct: 409 ELCKCQALFTKFGGHRQAAGVSLKEENVQRFRETINSLC--TLTEEDLQMKVYIDMQVPF 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
             +   LI+  +   P+G GN  P+FA  + K+   ++V      LQ   E +    ++A
Sbjct: 467 PYLTEDLIEQFQVMEPFGKGNKRPLFAEKDLKVIQPKIVGKNENVLQCILEDKQGNRMKA 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F    T L E L    GK   VT    +N + G +  QL ++
Sbjct: 527 VYFGDVKTCLKEMLA---GKVTAVTYFPSINEYMGRRSIQLTIV 567


>gi|110806795|ref|YP_690315.1| ssDNA exonuclease RecJ [Shigella flexneri 5 str. 8401]
 gi|110616343|gb|ABF05010.1| Single-stranded-DNA-specific exonuclease recJ [Shigella flexneri 5
           str. 8401]
          Length = 530

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/530 (31%), Positives = 267/530 (50%), Gaps = 16/530 (3%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132
            L+  +KA   +  A     +I++ GD+D DGA S AL +  +      N +  +P+R  
Sbjct: 6   QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 65

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYG +P ++++    GAQLI+TVD G +S+  +++A + GI VIV DHH        A 
Sbjct: 66  DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 125

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248
           A++NPN  D       L   GV F +++ +   LR             +L  LLDLVAL 
Sbjct: 126 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALG 185

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306
           TV DVVPL   NR    +G+   R  +  PG+KAL+E  N     + A +LG+ +GP +N
Sbjct: 186 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 245

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDI 365
           A GR+ + ++G  LL+ D+  E  +LA +LD LNQ R+ +E  M  +A       +    
Sbjct: 246 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRD 305

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
                + +    WH G+VG+LA+R+KE+F RP  A +   DG   GSGRSI+G  +   +
Sbjct: 306 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 365

Query: 426 SFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                   G+++K GGHAMAAGL++E   F      F +     +   +       DG L
Sbjct: 366 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPL 425

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQ 542
           + + + + +  +L  AGP+G   P P+F   + +L   R+V   HL++  E       L 
Sbjct: 426 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 484

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAF V      +    +  + + +   L +N +RG++  Q+ + +  P+
Sbjct: 485 GIAFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 530


>gi|330991943|ref|ZP_08315892.1| Single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter
           sp. SXCC-1]
 gi|329760964|gb|EGG77459.1| Single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter
           sp. SXCC-1]
          Length = 589

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 219/593 (36%), Positives = 320/593 (53%), Gaps = 12/593 (2%)

Query: 9   VECSISGFRWVSLL---GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65
           + CS++G +W               +AI Q+  +P+IV R+L  R ++ +    +L P++
Sbjct: 1   MTCSVTGRQWHWRAGGQASHTDRMGMAIAQQANLPEIVGRMLALRGIAPEQVGTYLTPTL 60

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
             LMP+P  L D D AA R+ +A+ + E + +FGDYDVDGA S AL+  FL         
Sbjct: 61  NDLMPNPSTLVDMDAAADRLARAVSSGETVGLFGDYDVDGACSTALLATFLQEQGCTVLT 120

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           +IPDR+ +GYGPN   +    ++GA LII +DCG+ + D L++A  +  D+I++DHHQV+
Sbjct: 121 HIPDRMTEGYGPNTPAIAAMQDKGASLIICLDCGTAAVDVLEHAGQR-SDIIILDHHQVQ 179

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243
                  A VNPNR D  S    LCAA V F+ +V   R LR           DL + +D
Sbjct: 180 GPLPEVVATVNPNRPDCPSRLHGLCAAAVTFMTIVATRRALRAAGWFDTRPMPDLWACMD 239

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           LVALATVCDV+PL GLNRA+V +GL +  R+   GL AL+E      P++A   G+ +GP
Sbjct: 240 LVALATVCDVMPLRGLNRAFVTQGLRIMGRRKRVGLAALLEVAGARDPLSAFTCGFAVGP 299

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INAGGRI +S LG RLL+  D  E  +LA +L+ +N NR+ +ES +L++A      Q  
Sbjct: 300 RINAGGRIADSGLGLRLLLCTDPAEARVLAERLNSVNHNRQSVESGILDRAMELAAAQRA 359

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
             Q  +V+V+ G  WHPG+VG++A R+KEKF RP    +  EDG   GS RS+ G D+G 
Sbjct: 360 --QGNAVLVLSGRDWHPGVVGIVAGRIKEKFNRPVLVGAEMEDGSVKGSARSVPGQDLGG 417

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +  A + G+L  GGGHAMAAG  +       L +F           L       ID V+
Sbjct: 418 AIIAARQAGLLSTGGGHAMAAGFGLPAAGVPALQEFLNHHLATA-ADLPDAVDLTIDAVV 476

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SET 540
           N +A  + L   ++   P+G GN  P+ A P  ++     +      L++T E +     
Sbjct: 477 NVAAATVELAADMDRLAPFGTGNDEPLIALPRVRVAYAERIGSEGNTLRLTLEGEGRGPR 536

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           L+A+ FR   +PL   L    G  +H+ G L    W+G       + D +  +
Sbjct: 537 LKALVFRANESPLATVLEDRDGPPLHLAGWLRAESWKGRTSATFFIRDVAVAQ 589


>gi|300768229|ref|ZP_07078134.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494293|gb|EFK29456.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 777

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/590 (29%), Positives = 283/590 (47%), Gaps = 26/590 (4%)

Query: 16  FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            +WV  L           + +  ++  +VAR+L+ R + + + A  FL+   + L+ DP 
Sbjct: 6   KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            + D +KA  RI +AI   ++I I+GDYD DG  S ++M   L     N N YIPDR  D
Sbjct: 65  NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN +  ++ I  G +L +TVD G      +     QGIDV+V DHH++ +E   AYA
Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +     G L  AGV F V   +   + ++                A+ TV D+
Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           V L G NR  V  GL V ++   PGL ALI+    I   +T  N+G+ I P +NA GR+ 
Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL + D +    LA +++ LN+ R+ +   +   A  +   Q  + +    +V
Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           + G  WH G++G++A+ + E  G+P+  ++ ++DG+  GSGRS+E +++   +    E  
Sbjct: 352 ITGHGWHEGVLGIVASHVVETSGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LV  GGH MA GLTV       L +  +  A   +          IDG L  +   +A 
Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEAAAGQQLADNAQV-SLPIDGTLPLAEATLAT 468

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  +++  P+G  NP P+F      +   R +     HL++      + T+ AI F + G
Sbjct: 469 LADIQALAPFGTDNPAPLFELVPTTVPQARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 526

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           T L     Q+    + + G L  N W G  + Q+ V D +         +
Sbjct: 527 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 574


>gi|153816125|ref|ZP_01968793.1| hypothetical protein RUMTOR_02373 [Ruminococcus torques ATCC 27756]
 gi|145846610|gb|EDK23528.1| hypothetical protein RUMTOR_02373 [Ruminococcus torques ATCC 27756]
          Length = 582

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/584 (28%), Positives = 288/584 (49%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW  ++ +   +   A   K+ I  ++AR++ NR++   +    +LN +I  L  D +++
Sbjct: 13  RWYVMMKKADFSSIGA---KYNISPVIARLIRNRDIIEDEEINLYLNGTIADLY-DGMLM 68

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I   + + + GDYD+DG  +  ++   L     + +  IPDRI DGY
Sbjct: 69  KDMDKAVEILSEKIREEKPVRVIGDYDIDGVNAAYILKEGLEGLGADVDTDIPDRIKDGY 128

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N  L+++ +++G   IIT D G  + + + Y    G+ VIV DHHQV   EI      
Sbjct: 129 GLNKMLIDRALDDGIDTIITCDNGIAAAEEITYGRKNGLTVIVTDHHQVPFVEINKEREY 188

Query: 192 -----YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
                 A+V+P R D      +LC A V + ++  +Y ++ +D       D+  L++ VA
Sbjct: 189 LLPQADAVVDPRRPDCEYPFKNLCGAAVAYKLVEALYNVMLRD-----PEDVDYLMENVA 243

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
           +ATV DV+ L G NR +V +GL + +R  N GLKALIE   I+   +   +LG+++GP I
Sbjct: 244 IATVGDVMALKGENRIFVKQGLEMLKRTKNEGLKALIECTGINPEYLNTYDLGFVLGPCI 303

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +   ++  MLA  L  LN +R+ M    +++A   +  +   +
Sbjct: 304 NASGRLDTAKRALELLSTRTRRDAVMLAEDLKALNDSRKEMTERGIKEAAEMI--ETTSL 361

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V V+     H  I G++A ++++++ RP+  ++  EDG   GSGRS E +D+    
Sbjct: 362 KEDKVFVIYLPDCHESIAGIIAGKIRDRYYRPTIILTKAEDGV-KGSGRSTEEYDM--FT 418

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +  K GGH  AAG++++  N  R  +         +          ID  +  
Sbjct: 419 ELCKCQALFTKFGGHRQAAGVSLKEENVQRFRETINSLC--TLTEEDLQMKVYIDMQVPF 476

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
             +   LI+  +   P+G GN  P+FA  + K+   ++V      LQ   E +    ++A
Sbjct: 477 PYLTEDLIEQFQVMEPFGKGNKRPLFAEKDLKVIQPKIVGKNENVLQCILEDKQGNRMKA 536

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F    T L E L    GK   VT    +N + G +  QL ++
Sbjct: 537 VYFGDVKTCLKEMLA---GKVTAVTYFPSINEYMGRRSIQLTIV 577


>gi|307826207|ref|ZP_07656417.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacter
           tundripaludum SV96]
 gi|307732741|gb|EFO03608.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacter
           tundripaludum SV96]
          Length = 581

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/566 (30%), Positives = 282/566 (49%), Gaps = 22/566 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+ + R ++       L+ ++  L P P +L+  ++    ++ AI   ++I I  
Sbjct: 26  HPVLERIFLARGLTS---TAELDRTLAKL-PSPWLLSGMEEMVGHLITAINEQQRICIVA 81

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S A+ ++ L           +P+R   GYG  P +++    +   +IITVD 
Sbjct: 82  DFDADGATSCAVAIKGLKLLGAGEVTFVVPNRFEYGYGLTPEIVDLVKLQNPDVIITVDN 141

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S + ++ A + GI V++ DHH    E   A A+VNPN +DD    G L   GV+F V
Sbjct: 142 GISSMEGVRVAKDLGIKVLITDHHLPAHELPIADAIVNPNLVDDKFPSGALAGVGVIFYV 201

Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-R 273
           L+ +   LR+ N    N     +L  LLD VAL TV DVV L  +NR  V +GL+  R R
Sbjct: 202 LMALRSRLREKNWFEKNQLQEPNLAQLLDYVALGTVADVVALDQINRVLVHQGLLRIRTR 261

Query: 274 QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           + +PG+ ALIE        I A +LG+ +GP +NA GR+ + +LG + L+++D    + +
Sbjct: 262 RSHPGINALIEVSGRKPESIFASDLGFALGPRLNAAGRMDDMSLGIQCLLTEDPLLAKEM 321

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKV--LTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
           A++LD LN +RR +E  M  +A A +  + + D+    + + +    WH G++G+LA+R+
Sbjct: 322 ALQLDELNNDRREVEGQMKNEAMALLGEMKKLDEHHLPAGVCLFDSSWHQGVIGILASRI 381

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448
           K++  RP  A +     +  GS RSI G  I  ++S   A    +L K GGHAMAAG+++
Sbjct: 382 KDQLHRPVIAFAPAGKDEIKGSARSIPGVHIRDVLSDIAAAHPKLLSKFGGHAMAAGMSL 441

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  ++      F       +  +        DG L    + I   D+L++AG +G   P 
Sbjct: 442 KMHDYPPFALAFDALVRKRLVTIDLEQKIYSDGELTEQEMTIEFADLLQNAGTWGQEFPE 501

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           PVF      +   R+V   HL++       +  + AIAF V        L     + +  
Sbjct: 502 PVFDG-VFDVIQSRIVGQRHLKLVLRKPFGDLLIDAIAFYVDKPESWLGL-----RHIKA 555

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPVE 593
              L +N +RG++  Q  V     + 
Sbjct: 556 AYKLDINEFRGNRSVQFIVQYLEKIT 581


>gi|194337227|ref|YP_002019021.1| single-stranded-DNA-specific exonuclease RecJ [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309704|gb|ACF44404.1| single-stranded-DNA-specific exonuclease RecJ [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 573

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/583 (28%), Positives = 265/583 (45%), Gaps = 19/583 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           FRW  L   E     L +++   +   VAR L NR + + D A+D+   SI  L    L+
Sbjct: 4   FRWNLLSPDE--QAVLVLSEAINVSLPVARALFNRGIQTFDEARDYFRSSILSLPSPYLL 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    KA  R+VQAI + EKIM++GDYDVDG    AL++ FL       + YI DR  +G
Sbjct: 62  LH-MRKAVDRVVQAIRDHEKIMLYGDYDVDGTTGTALLLLFLKEQGALVSYYINDRFTEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++  + +   L++TVDCG    +A+      GIDVI+ DHH+       AYA+
Sbjct: 121 YGLSAEGIDTAVEQEVTLLVTVDCGINENEAVLRCAAHGIDVIICDHHE-PDVLPLAYAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV F  +  I                   LD VA+AT  D+V
Sbjct: 180 LNPKVPGCTYPFRELCGCGVAFKFIQAIAEH-----VHAEPESWQKYLDFVAIATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            L   NR  V +GL   R +    L A+   + I+   +   ++ + I P INA GR+  
Sbjct: 235 SLEQENRTLVREGLQRMRTKPRTNLMAMFSLMKIAPAELGMFHIAFGIAPRINAAGRMHS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++L    L+SD S + +    +LD +N  RR +++ ++ +AE  + +        S IV+
Sbjct: 295 AHLAVEWLLSDTSVDAQRHVDELDRINSLRREIDADIMGKAEKMLDSHFASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+++ EK   P+  +     G   GS RS+EG +I + +        
Sbjct: 353 YDESWHIGVLGIVASKMIEKHYLPTVILGGMN-GLIKGSVRSVEGLNIYEALQEC--GDY 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG+T+   NF      F +    ++          +D  +    +    I
Sbjct: 410 LEQFGGHHQAAGITLRPENFAGFRKKFNEVCSTLLSIGQRQKELVVDSKIALEDITSRFI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ++LE   PYG GN  P+F           R++   H++ T   ++  T   I F      
Sbjct: 470 NVLEQFAPYGHGNREPLFLSEGIVPYGQPRLLKERHVKFTVRDKNGRTFDVIGFDRLD-- 527

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           +   L +       +   +    W   ++ Q+++ D    + H
Sbjct: 528 IYTELKEHSRPVFTMVYSVEKRMWNNREQWQIKLKDLELTKRH 570


>gi|289432757|ref|YP_003462630.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp.
           GT]
 gi|288946477|gb|ADC74174.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp.
           GT]
          Length = 566

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 29/579 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W                Q    P +++R+L NR ++  + A  FL+P  + L  DP +  
Sbjct: 9   WKLKPALP-----EETGQNFPYPPLISRLLYNRGITTIEAADLFLSPD-KRLNHDPFLFP 62

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D + A  RI +A+   EKI+++GD+D DG  + A++   ++    N   YIP RI +GYG
Sbjct: 63  DMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRITEGYG 122

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
              S +EK   EG  L+I+ DCG T+   ++ A   G+DVIV DHH    E  PAYA++N
Sbjct: 123 LKISALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P           L   GV + ++  +YR L ++++         LLDLVA+ TV D+VP+
Sbjct: 183 PKMPCSTYPFKELAGVGVAYKLIQALYRNLGREDEAK------DLLDLVAIGTVADIVPI 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
           +  NR  V +G+ +   +  PGL  + +        I  E++ +++ P +NA GR+  + 
Sbjct: 237 LDENRYLVKEGVKLLNAEPRPGLIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHAM 296

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G +LL +    + + LA+ L+  N  R+ +    +E+A A + TQ       ++++   
Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQF----PPALLIFSD 352

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
                GI GL+A RL +++ RPS  I         GS RSI  F+I  + +      +  
Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALNHFAHLFS 409

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGHA AAG T+   N          +A  I+  +   P   ID   + S +  A +  
Sbjct: 410 HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSGMELKPFIDIDIDTDLSLLCPATLRE 469

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           LE   P+G  NP PVF      +   R +     HL++  + +       +AFR      
Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQA---- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            + L       + +  +L ++ W G+   +L+++D +P 
Sbjct: 525 -KELSSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAPS 562


>gi|324991634|gb|EGC23567.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           sanguinis SK353]
          Length = 740

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W          + L   +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQF-ATNFTDEKFLKQAKKAGLESAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQDISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P          HL   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAVVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  + ++        V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDSK------RPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    +  +    L    V  +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELRLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ + R +    +HL++    +D    + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISKED-AAFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|270308235|ref|YP_003330293.1| single-stranded-DNA-specific exonuclease [Dehalococcoides sp. VS]
 gi|270154127|gb|ACZ61965.1| single-stranded-DNA-specific exonuclease [Dehalococcoides sp. VS]
          Length = 566

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/579 (27%), Positives = 275/579 (47%), Gaps = 29/579 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W               +Q    P +++R+L NR + +++ A+ FL+   R L  +P +  
Sbjct: 9   WKLKPAPP-----EKTSQNFPYPPLISRLLHNRGIETVEEAELFLSSD-RRLNHNPFLFP 62

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +KA  RI +A+   EKI+++GD+D DG  + A++   ++    N   YIP R+ +GYG
Sbjct: 63  DMEKAVSRIYKALLTGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRVTEGYG 122

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
              S +EK   EG  LII+ DCG T+   ++ A   G+DVIV DHH    E  PAYA++N
Sbjct: 123 LKISALEKHRTEGVSLIISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P    +      L   GV + ++  +YR L ++++         LLDLVA+ T+ D+VP+
Sbjct: 183 PKVPGETYPFKELAGVGVAYKLIQALYRNLGREDET------RDLLDLVAIGTIADIVPI 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
           +  NR  V +G+ +   +  PG+  + +        I  E++ +++ P +NA GR+  + 
Sbjct: 237 LNENRYLVKEGIKLLNAEPRPGIIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLQHAL 296

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G +LL +    + + LA+ L+  N  R+ +    +E+A A++ TQ       ++++   
Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVHFVEKARARLDTQFL----PALLIFID 352

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
                GI GL+A RL +++ RPS  I         GS RSI  F+I  + + +    +  
Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALSRFAHLFS 409

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGHA AAG T+   N          +A   +  +   P   ID   + S +  A +  
Sbjct: 410 HFGGHAQAAGFTLPIENLDAFAQGISAYAEETLSGVELKPFIDIDIDTDLSVLCPATLRE 469

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           LE   P+G  NP PVF      +   R +     HL++  + +       +AFR      
Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQAKELN 528

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           G          + +  +L  + W G+   +L+++D SP 
Sbjct: 529 GFLQ-----SPVDIVYNLEQDKWCGTDTLRLKIIDMSPA 562


>gi|300312092|ref|YP_003776184.1| single-stranded-DNA-specific exonuclease [Herbaspirillum
           seropedicae SmR1]
 gi|300074877|gb|ADJ64276.1| single-stranded-DNA-specific exonuclease protein [Herbaspirillum
           seropedicae SmR1]
          Length = 564

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/574 (29%), Positives = 263/574 (45%), Gaps = 26/574 (4%)

Query: 26  GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
            + +A  +  +  +  ++ARV   R +S       L   +  L+  P  L   D AA  +
Sbjct: 10  DLVQAEQLINE-GVHPVLARVYAARGLSSA---RELASELNALIA-PSGLLHIDAAASYL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             AI   +K++I  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E  
Sbjct: 65  ADAIAARKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEIVELT 124

Query: 146 -INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              +   +I+TVD G  S D +  A  +GIDV+V DHH        A  +VNPN+     
Sbjct: 125 VREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPQARVIVNPNQPQCGF 184

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
              +L   GV+F VL+ +   +R+           L SLLDLVAL TV DVV L   NR 
Sbjct: 185 PSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDANNRI 244

Query: 263 YVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R        A         +   T  +LG+ +GP +NA GR+ + +LG   
Sbjct: 245 LVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSLGIEC 304

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L +DD      +A +LD +N+ RR +E+ M + A   +     +      I V    WH 
Sbjct: 305 LTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDD--YNPADRRTIAVFDPSWHQ 362

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           G++G++A+RLK+KF RP+   +  ++G   GSGRSI GF +   +         ++ K G
Sbjct: 363 GVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTKFG 422

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLT+    F      F+    + +       V + DGVL  +  ++  I +++ 
Sbjct: 423 GHAMAAGLTIHAEAFDAFSHAFEAVGRDWLTQNQLERVIETDGVLEDAYYSVEFITLMDQ 482

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
              +G G   PVF   + ++ + R++   HL++  E +D     AI F            
Sbjct: 483 -QVWGQGFAPPVFC-DHFRVLNQRILKEKHLKLQLE-KDGRRYDAIWFGHTD-------- 531

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            S  +   V   L  N + G    QL V  A P 
Sbjct: 532 -SLPELAKVAFRLDANEYNGRTTVQLMVEHAEPA 564


>gi|73540776|ref|YP_295296.1| exonuclease RecJ [Ralstonia eutropha JMP134]
 gi|72118189|gb|AAZ60452.1| exonuclease RecJ [Ralstonia eutropha JMP134]
          Length = 565

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/561 (29%), Positives = 254/561 (45%), Gaps = 24/561 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +   +AR+L  R V        L+  +  L+P P  +     AA  +  AI   ++++I
Sbjct: 21  GLHPTLARILSARGV---AQPSELSTELPGLVP-PSAMKGIGHAAEYLADAIAAGKRLLI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +R L          +P+R   GYG  P ++     +   +I+TVD
Sbjct: 77  VADYDCDGATACAVGVRGLRMLGARVEYIVPNRFEYGYGLTPEIVALAAKQQPDVIVTVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S D +  A   GIDV+V DHH   SE  PA  +VNPN+        +L   GV+F 
Sbjct: 137 NGIASVDGVAAANAAGIDVVVTDHHLPGSELPPAAVIVNPNQPGCEFPSKNLAGVGVMFY 196

Query: 218 VLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR--R 273
           VL+ +   LR+           L +LLDLVAL TV DVV L   NR  V +GL   R  R
Sbjct: 197 VLMALRAELRKRGVYTQQTQPPLQTLLDLVALGTVADVVKLDTNNRILVAQGLKRMRAGR 256

Query: 274 QGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
                          ++     +LG+ +GP +NA GR+ + +LG   L++DD+     +A
Sbjct: 257 MQPGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDANRAWEIA 316

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
            +LD +N+ RR +E+ M ++A   +       D      + V  D WH G++G++A+RLK
Sbjct: 317 QELDGMNRERRDIEAGMQQEALQILEQPLAGPDPSSRFTVSVFNDTWHQGVIGIVASRLK 376

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           +KF RP+   +  ++    GSGRSI GF +   +        G++VK GGHAMAAGLTV 
Sbjct: 377 DKFHRPTITFAPGDETTVKGSGRSIPGFHLRDALDLVSKRCPGMMVKFGGHAMAAGLTVH 436

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F    + F+      +       V + DG +     +   + +LE    +G G P P
Sbjct: 437 ADRFAEFQEAFEAVGKEWLSDEQLARVIETDGDIEDQCFSPEFVTLLEQ-QVWGQGFPAP 495

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F      +    V+   HL++    +  +   AI F               G    +  
Sbjct: 496 TFCGE-FDVLRQSVLKGKHLKLQL-GRGKQRFDAIWFNHADE---------LGASAQIAY 544

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L  N + G  R QL +  A 
Sbjct: 545 RLDNNTFNGITRVQLVIEHAQ 565


>gi|114328064|ref|YP_745221.1| single-stranded-DNA-specific exonuclease recJ [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316238|gb|ABI62298.1| single-stranded-DNA-specific exonuclease recJ [Granulibacter
           bethesdensis CGDNIH1]
          Length = 616

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 219/605 (36%), Positives = 320/605 (52%), Gaps = 19/605 (3%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQ-----EGINRALAITQKHAIPDIVARVLVNRNVSIDY 56
              A LGVE S++G  W   +             LAI+Q+H + D++ R++  R + ID 
Sbjct: 17  VTDAVLGVERSLTGRAWYWRMPAGADIAAIERLGLAISQRHGVSDLLGRLIATRGIGIDQ 76

Query: 57  AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL 116
           A  FL P++R LMPDP +L   D+AA RI  AI   E I IFGDYDVDGA    LM+  L
Sbjct: 77  ADTFLQPTLRALMPDPSVLAGMDQAAARIAAAITARETIAIFGDYDVDGACGTTLMLTVL 136

Query: 117 SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176
             C      +IPDR+ +GYGPN   +      GA LII VDCG+ +  AL   + +  D+
Sbjct: 137 RACGCPVLYHIPDRLREGYGPNAPALLSLAERGASLIICVDCGTAAQTALSAVSGR-ADI 195

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---P 233
           +V+DHH+  +    A A VNPN  DD SG   LCA GV  L  V  +R LR +       
Sbjct: 196 LVLDHHKSDTLPPAALATVNPNGPDDRSGLTMLCATGVALLTCVATFRQLRLNGWQGHEG 255

Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293
              DLL +LDLVALATVCDV+PL G+NRA+V +GL V  R+   G+ AL+E   ++  +T
Sbjct: 256 PPPDLLEMLDLVALATVCDVMPLTGINRAFVTQGLKVMDRRNRIGIAALLEVAQMTGRVT 315

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
           A   G+++GP INA GRI  +++G RLL + D      +A  LD +N  R+ +ES++L+ 
Sbjct: 316 ASTCGFVLGPRINAAGRIDSADMGVRLLTATDPIAARDIAQALDSVNGRRQTVESSILDA 375

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           A  +   +       + IV+ G+ WHPG+VG++A RL+E+F RP+   +   DG   GSG
Sbjct: 376 AVREA--EARIEAGDAAIVIGGEDWHPGVVGIIAGRLRERFNRPACV-AGSADGLLKGSG 432

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RS+ G D+G  +  A + G+L  GGGHAMAAG  +   +      F  +           
Sbjct: 433 RSVPGIDLGAAIIAAHQHGLLRSGGGHAMAAGFALPPESMPAFRTFMNERLAAAALLPKA 492

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQM 531
             +   D  L A AV +A+ + L    P+G GN  P+   P  + +    +      ++ 
Sbjct: 493 ADLAL-DASLGAGAVTVAMAEELAQLAPFGNGNDEPLLVLPRLRCRRAERIGRDGGTIRA 551

Query: 532 TFESQDSETLQAIAFRVYGT----PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
             ES+   T++A+ FR        P+ + L+    + +H+ G+L    W G+      + 
Sbjct: 552 FLESESGYTIKALLFRAKPEDMAAPIADILLNRELRPLHLAGYLRAETWNGTTSANFCIS 611

Query: 588 DASPV 592
           DA+  
Sbjct: 612 DAALA 616


>gi|332981507|ref|YP_004462948.1| single-stranded-DNA-specific exonuclease RecJ [Mahella
           australiensis 50-1 BON]
 gi|332699185|gb|AEE96126.1| single-stranded-DNA-specific exonuclease RecJ [Mahella
           australiensis 50-1 BON]
          Length = 835

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/576 (30%), Positives = 274/576 (47%), Gaps = 26/576 (4%)

Query: 23  GQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKA 81
                +    +++K  +  ++A++L  R ++ +  A  FL+PS+  L  DP  L D D A
Sbjct: 9   SNPDYDMIQNLSRKLNVSPLLAQLLWQRGITDEATAAAFLHPSLSQLH-DPYALPDMDVA 67

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
            R I  A+ +  KI ++GDYDVDG  S A+M+  L      A  Y+PDR  +GYG N   
Sbjct: 68  VRCIKGAVQSGAKIAVYGDYDVDGITSSAIMLSILREMGAEAIPYLPDRFSEGYGLNSDA 127

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           + K  ++G  LIITVDCG T+ + ++ A   GI V+V DHH    E   A A+VNP+R D
Sbjct: 128 IYKLHDQGVGLIITVDCGITAVEEVKLAHELGIQVVVTDHHHCADELPDAQAVVNPHRPD 187

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                  L   GV F +   +  +             +  +D+ AL TV D+VPL+G NR
Sbjct: 188 ATYPFASLAGVGVAFKLGCALIGL----------DAAMDYIDIAALGTVADIVPLVGENR 237

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIGESNLGS 318
             V  GL   +     G+KAL +   +      I  E++ + + P +NA GR+  +  G 
Sbjct: 238 VIVKYGLQRIKDNTRLGIKALWQAAGLKDDISCINTEHIAFQLAPRLNAAGRMSSAIKGL 297

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            LL+S D+ E   LA  LD  N+ R+ +E  ++++A   +     D+++   IV+  + W
Sbjct: 298 TLLMSQDADETAALAKDLDADNRQRQSIERQIIQEAIGMI-DDTVDLRRDFAIVLAKEGW 356

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H G++G+ A +L E + RP   I+  E G G GS RSI   D+    +        V  G
Sbjct: 357 HQGVIGIAAGKLAEMYHRPVLMIALSE-GMGHGSARSISSLDLY--QTLVQCRKYFVAFG 413

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHA AAG ++   +   L         +++      P+   D  +N   ++ A +D L  
Sbjct: 414 GHAQAAGFSILEEDINALRRKLNAILSDVLSPQDVMPLIHYDASINIEDISPAALDELSL 473

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G  N  P F       + +R V    AHL++   +QD   L  IAFR       ++
Sbjct: 474 LEPFGDANEEPAFLISAASFKDMREVGADKAHLKLCL-TQDGIDLDCIAFRNGN----KY 528

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 + + V G L +N W G ++ QL+     P 
Sbjct: 529 QELCCCQGLDVIGSLGLNTWNGVQKVQLKAAHIRPS 564


>gi|197121723|ref|YP_002133674.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp.
           K]
 gi|196171572|gb|ACG72545.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp.
           K]
          Length = 573

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/589 (34%), Positives = 292/589 (49%), Gaps = 25/589 (4%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69
              +G RWV           LA      +  + ARVL  R       A+ FL   +  L 
Sbjct: 2   SGATGKRWVEAAVDAARAAQLAGA--LDLHPLAARVLTARGHADPAEAEAFLAARLADL- 58

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  +   D A  RIV+A+   E+I  +GDYDVDG  S AL+  FL     +   Y P 
Sbjct: 59  PDPFRMKGMDAAVERIVRALEGGERIACYGDYDVDGVTSTALLCGFLRAAGADVVTYTPH 118

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+V+GYG N   +     +G +L++T+DCG TS D ++ A   G+D +V+DHH V  E  
Sbjct: 119 RLVEGYGLNGDAVRSLAGQGVRLLVTLDCGITSVDEVRVAAGLGLDTVVVDHHTVPVELP 178

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVA 246
            A A++NP++         L A GV F + + + R LR+  +        +L   LDLVA
Sbjct: 179 AAAAILNPHQPGCGYPSKDLAAVGVTFALAMALRRRLRERGRFGPARPEPNLKEALDLVA 238

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304
           L TV DVVPL+G NR  V  GL        PG++AL         +P+TA  +G+ + P 
Sbjct: 239 LGTVADVVPLVGANRILVRWGLEQLATSRRPGVRALKRVAGIADGTPVTAGQVGFRLAPR 298

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+ ++  G RLL+S D+   + LA +LD  NQ R+ +E  +LEQA A    +   
Sbjct: 299 INAAGRLDDAGRGVRLLLSGDAAAAQALADELDRENQARQEIERRILEQALADAAARVAA 358

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
             +  V  +  D WH G+VG++A+R+ E+F RP+  I+  EDG G GSGRSIEGF +   
Sbjct: 359 GARGLV--LARDGWHAGVVGIVASRVVERFHRPAVLIA-LEDGAGKGSGRSIEGFHLYDA 415

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           ++     G L + GGH  AAG+TVER         F+  A   +      P  +IDG + 
Sbjct: 416 LAAC--SGHLARFGGHRHAAGVTVERAQVEPFRAAFEAHAAATIADEDLVPRCRIDGWVG 473

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQA 543
            + V     + L   GP+GAG+P PVFA      ++  V    AHL++         L A
Sbjct: 474 DAEVTEDAAEALGRLGPFGAGHPEPVFALRGAAARARTVGAGGAHLKLAL----GRGLDA 529

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           I F +           + G  +     +  + W G++R QL++ D  P 
Sbjct: 530 IGFGMGDR------APACGGPVDAAFTIGFDEWDGTRRLQLKLKDLRPA 572


>gi|325290219|ref|YP_004266400.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965620|gb|ADY56399.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 669

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/577 (27%), Positives = 270/577 (46%), Gaps = 24/577 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W      +     L I     +      +L  R + S +   DFL PS+  +   P +
Sbjct: 3   KVWQLQENSQTEYSGLDI----GLTATTLSILQKRGINSTEGILDFLRPSLLDVH-SPFL 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D      RI +A  N EKI+I+GDYDVDG  S AL+ +      ++A +YIP R  +G
Sbjct: 58  FQDMAAVISRIARAKENQEKILIYGDYDVDGITSTALLYKVFQKLGLDAYVYIPHR-SEG 116

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG    ++EK      +LI++VDCG T+ + +  A   GID I+ DHH+ ++E   + A+
Sbjct: 117 YGIKKDVVEKAAQSAVKLIVSVDCGITAVEEVLLAAEIGIDFIITDHHEPQNELPASLAI 176

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           L   GV + ++  + +   Q           + LDLVAL T+ DVV
Sbjct: 177 INPKVPGSGYPFRELAGVGVAYKLVQALGQEFGQGAPADFCEC--AYLDLVALGTIADVV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V  GL   +   + GL+AL+      +    A  + +++ P INA GR+  
Sbjct: 235 PLTGENRILVASGLRQMKNTIHTGLRALLAECGLAARVPKAGQIAFIVAPRINAAGRLDT 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LL+ ++ +E   LA +L   N +R+ ++  +L +AE  +  +    Q   VIV+
Sbjct: 295 AKAALNLLLEENDEEALALAAQLSRENAHRQDVQGKILAEAEEMLDQE----QLPDVIVL 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A++L E++ RP F I+  + G G GS R I G+ +  +     + G+
Sbjct: 351 SSPDWHHGVIGIVASKLVERYYRPVFIIAEAD-GVGKGSARGISGYHV--LKELQEQAGL 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAG T+   N   L     +   + +   +      +D  +    +++ L 
Sbjct: 408 LTHFGGHQQAAGFTLPIENIALLRKALNEGICS-LGGELFKQKVAVDSEIMMEEIDLGLF 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             +E   P+G GNP P+F      ++    V     HL++  E+     ++A+AF +  +
Sbjct: 467 AEIEQLAPFGMGNPAPLFVTKGVNIREACTVGKEKKHLKLRLEAAKQSVIEAMAFNIGES 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
                      + + +  ++  N + G ++ Q+ + D
Sbjct: 527 ----LESFQTAQTVDLVYNIDKNEYLGREKIQISIRD 559


>gi|312875796|ref|ZP_07735786.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797277|gb|EFR13616.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 798

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/577 (29%), Positives = 299/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW+        N  + I  +  I   + +VL NR V   +  + FLNPS++ L  +P +
Sbjct: 6   KRWILKDNNNFENMDIEIDGR-KIKPQIIKVLNNRGVQEKEEIERFLNPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L+D  +A + I +AI +  +++I+GDYD DG  S  L+   L +  +  + YIP+R  DG
Sbjct: 64  LSDMKEAVKIIHEAILHKSRVLIYGDYDCDGVTSTYLLYSTLRNF-LPTSYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K + +   L+ITVD G ++ + ++Y   +G  VI+ DHH+ K     A A+
Sbjct: 123 YGLNLDVLKK-LEDKFDLLITVDTGISAQNEVKYLKEKGKKVIITDHHEPKEVLPDADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D +     L   GV F +L  +           LN  L   LD+VA+ T+ DV+
Sbjct: 182 INPKRKDSVYPFRDLAGVGVAFKLLHAL-------KSSGLNLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR +   GL V +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRIFAKFGLKVLKNTRNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  D+ + E +A +LD  N+ R+ +E   +++A++ +  +   I +  + V
Sbjct: 295 DANLAVSLLLEKDAIKAESIAKRLDEENRKRQEIEEKTIKEAQSLI-AKNKSILKKKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  + G   GSGRSI+GF++ + +    E  
Sbjct: 354 LSNGSWHAGVVGIASSKITEKYYRPSLLLTVADQGILKGSGRSIKGFNLFEALKSCSE-- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  ++D VL+ + ++  L
Sbjct: 412 ILLKFGGHEYAAGLSLPVDNVEKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +D +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 VDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGEDNKYYKFFTGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +   ++ Q  ++D 
Sbjct: 527 LEDEDELISMKKVDIVCKLERNLFNSVRKNQFNIIDI 563


>gi|167771536|ref|ZP_02443589.1| hypothetical protein ANACOL_02906 [Anaerotruncus colihominis DSM
           17241]
 gi|167666176|gb|EDS10306.1| hypothetical protein ANACOL_02906 [Anaerotruncus colihominis DSM
           17241]
          Length = 685

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/577 (31%), Positives = 282/577 (48%), Gaps = 25/577 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
            RW     Q     A    +   +P +  R+L  R      A + FL       + DP+ 
Sbjct: 4   KRWNIR--QADDEAARHAAKALGLPPLAVRILAGRGFDTQEAIRRFLTGDCA--LTDPMA 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D+A +RI +AI   EKI ++GDYD DG  S  ++  +L     +   YIP R  +G
Sbjct: 60  LRDMDRAVKRIRRAIAEGEKIAVYGDYDCDGILSTVVLYSYLESAGADVCYYIPHRDREG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   ++G +L+ITVD G T+ D + +A + GIDV+V DHH+ +     A A+
Sbjct: 120 YGLNREALQIIRDDGVRLVITVDNGITAVDEVAFAASIGIDVVVTDHHKPRDMLPQAVAV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P+RLDD SG  +L   GV F ++  +            +  L    DL+A+ATV D+V
Sbjct: 180 VDPHRLDDESGCEYLAGIGVAFKLICAL-------EGDDGDLMLEQYGDLIAVATVADIV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313
           PLIG NR  V +GL   +   N GL ALI    +    ++ EN+ Y I P IN+ GR   
Sbjct: 233 PLIGENRTIVRRGLESLQSTDNEGLAALIRVCGMADRQLSCENIAYGIVPRINSAGRFDC 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +    L  S    E E LA  ++ LN+ RR +E  ++ Q   ++  Q +++    +IV+
Sbjct: 293 VDNAVELF-SGGCDEPETLAGDINSLNEKRRAVEDQIVRQIMNQLDAQTEEL-GRRIIVI 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G+VG++A+R+ E+FG+P    S  E     GS RSIEGF I   +       +
Sbjct: 351 HGEGWHHGVVGIVASRMVERFGKPCIVFS-VEGDVARGSARSIEGFSIIDAIDACSR--L 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGH  AAGLTV   N     +    +A +  P  +      ID  ++   + +  I
Sbjct: 408 LIRYGGHNQAAGLTVSMANLKAFKNAINDWAASHYPD-MPQQTINIDCAISPRQLTVEEI 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
             L    P+G+GN  PVF   +  LQ I  +    H+++ F   D     A+ F +    
Sbjct: 467 APLSMLEPFGSGNEPPVFTIRSCVLQGIYAIGDGKHVRLRF-CGDGCVFYAVYFGMTQAN 525

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               +    G+ + +   + VN W G +R  ++V D 
Sbjct: 526 FPYTI----GETVDLAVTVDVNEWNGEQRVSVKVRDI 558


>gi|222528696|ref|YP_002572578.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455543|gb|ACM59805.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 798

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/577 (30%), Positives = 295/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW+        +  + I  +  I   + +VL NR +   +  + FLNPS++ L  +P +
Sbjct: 6   KRWILKDNSNIEDMDIEIDGR-KIKPQIIKVLNNRGIQEKEEIEKFLNPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A + I QAI    +++I+GDYD DG  S  L+   L +  +    YIP+R  DG
Sbjct: 64  LPDMKEAVKIINQAILRKSRVLIYGDYDCDGVTSTYLLYSVLKNF-LPTIYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K + +   L+ITVD G ++ + ++Y   +G  VI+ DHH+ K     A A+
Sbjct: 123 YGLNLDVLKK-LEDKFDLLITVDTGISAQNEVKYLKEKGKTVIITDHHEPKEVLPEADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D +     L   GV F +L  +           +N  L   LD+VA+ T+ DV+
Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR     GL + +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVEENRVLAKFGLKILKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  D  + E +A KLD  N+ R+ +E   +++A++ +  +   I +  + V
Sbjct: 295 DANLAVSLLLEQDIIKAESIAKKLDEENRKRQEIEEKTIKEAQSLI-NKNKGILRKKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  ++G   GSGRSI+GF++ + +      G
Sbjct: 354 LSNGSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNC--AG 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  +ID VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEIDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +   ++ Q  +LD 
Sbjct: 527 LEDEDELISMKKVDIVCKLEKNLFNSVRKNQFNILDI 563


>gi|312869036|ref|ZP_07729213.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus oris
           PB013-T2-3]
 gi|311095462|gb|EFQ53729.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus oris
           PB013-T2-3]
          Length = 776

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/580 (28%), Positives = 272/580 (46%), Gaps = 28/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W     +        +  + AI   +A +L  R +     A+DFL PS+  +  DP +
Sbjct: 10  YNWQDQSAKVDQQVVQTLQDELAISKTMAVLLAERGIADAQAARDFLKPSLSAVH-DPRL 68

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D+A  RI  A+ N EKI ++GDYD DG  S A+M   L+    + + Y+PDR  DG
Sbjct: 69  LHDMDQAVERIETAVANGEKITVYGDYDADGITSTAVMYEALTGIGADVDYYVPDRFKDG 128

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN +  ++ I  G +LI+TVD G +    ++ A  QG+DV++ DHH++ +E   A A+
Sbjct: 129 YGPNQAAYDRIIANGTKLIVTVDNGVSGKQVIESAIAQGVDVVITDHHELPAELPKATAI 188

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P           L   GV F ++  +     +            +LDL+A+  + DVV
Sbjct: 189 VHPRYPGSSYPFPDLSGVGVAFKLVWALQEEFSE-----------EMLDLLAIGEIADVV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            +   NRA +  G+   R+   PGL ALI    ++   +T + +G+ I P +NA GR+  
Sbjct: 238 SVTDENRALISLGIQELRQGMRPGLHALISLAGVNESQLTDQEIGFTIAPRLNALGRVAN 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N G  LL + D      LA +++  NQ RR +   ++  A+ +        QQ  V+V+
Sbjct: 298 ANAGVELLTTLDENRGRELAEQVEAANQERRQLVDDIMTTAKKQA--LSPANQQRPVLVL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEG 432
            G  WH G++G++A+R+ +  G+P+      ED +    SGRS+ GF++    +      
Sbjct: 356 AGHGWHQGVLGIVASRIMDDTGKPTIVAGINEDEEVAKASGRSLPGFNL--FQALDQHRD 413

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +    GGH  A GL++     G L +     A              +   L    V   L
Sbjct: 414 LFTAFGGHPAACGLSLPEEQLGTLQEALVAEAAEQGFTGKQKQPLAVATGLAVGDVTEQL 473

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
              L+  GP+G GN  PVF F + +  +++ +     HL+     Q    L  +AF    
Sbjct: 474 YQQLQQLGPFGPGNDQPVFLFRDVQPTNVKTMGKDNSHLKFNLSPQ----LAVVAFNQGN 529

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 L+  +G  + +   L +N W+G ++ QL + D  
Sbjct: 530 LA---PLLAGQGTTVDMVAKLSINEWQGKRQVQLMLEDIQ 566


>gi|291278480|ref|YP_003495315.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans
           SSM1]
 gi|290753182|dbj|BAI79559.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans
           SSM1]
          Length = 582

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/584 (30%), Positives = 295/584 (50%), Gaps = 23/584 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           ++W+    +  I +   +  K  +P  +   L  R + + D    F N  ++ L  +P  
Sbjct: 11  YKWLI--EEVNIEKLFDLIDKWRLPLPIGVTLFKRGILTSDDLHAFFNTPLQSL-KNPFH 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KA RR+ +AI + EKI ++GDYDVDG  S AL+  FL     N   YIP+RI +G
Sbjct: 68  MKDMEKAVRRVYEAIISGEKICVYGDYDVDGVTSTALIYLFLKEVGANVGYYIPNRIEEG 127

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +    G +L+ITVDCG T+ D +++A N G+DVI+ DHH+       A+++
Sbjct: 128 YGLNKEAINELRARGVELLITVDCGITALDEIKFAKNIGMDVIITDHHKPLESLPEAHSI 187

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDV 253
           +NP +  D     HL   GV F  ++ +   L  +N       +L   LD+VAL T+ DV
Sbjct: 188 LNPLQPGDEYKFKHLSGVGVAFKFIMALRYSLSLNNFFKDKIPNLKKYLDIVALGTIADV 247

Query: 254 VPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           VP++  NR +V  GL V  ++    GL+ L      +++ I   ++GY++ P INA GR+
Sbjct: 248 VPMVDENRIFVKHGLKVLSKKDVRIGLQELKRVTGLLNTNIEVSHVGYVLAPRINAVGRL 307

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GES+ G +LLI+ +  E   LA +LD+ N+ R+ ME  +L     K+  +     + + +
Sbjct: 308 GESDRGVKLLITKNKNEARWLAEELDIENRYRQEMEKKILNDTFNKI-EKLGLANKYAGM 366

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  DRWHPGI+G++A+R+ EK+ +P+  IS  E+G G GS RSI  F +   +      
Sbjct: 367 VLFSDRWHPGIIGIVASRVAEKYNKPTIVIS-VENGIGKGSARSISDFHLYDCLQEL--S 423

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            + +K GGH  AAGL +   +   L   F +                ID ++    +N+ 
Sbjct: 424 DLFLKFGGHKYAAGLQLYERDIKVLQKRFHELVRKYRDVGSEKSSIVIDAIVEPKDINMD 483

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-----LAHLQMTFESQDSETLQAIAF 546
           L++ +E   P+G GNP PVF     +++  +         +H++   E +D    + + +
Sbjct: 484 LMNWIERMKPFGQGNPEPVFCLK--RVRKYQQFGFTGRDRSHVRGFVE-KDGYIFEIVGY 540

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +       FL      +  +     +N W G +   L++ D  
Sbjct: 541 NMKEYKY--FLKNY--DKFDILFTPEINQWFGDRSILLKIKDFK 580


>gi|56478737|ref|YP_160326.1| exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease
           [Aromatoleum aromaticum EbN1]
 gi|56314780|emb|CAI09425.1| Exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease
           [Aromatoleum aromaticum EbN1]
          Length = 563

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/558 (29%), Positives = 263/558 (47%), Gaps = 24/558 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+   R +S    ++ L+  ++ L+P P  L   D+AA+ +  AI    +++I
Sbjct: 21  GTHPLLARIYAARGISR---REELDYGLKGLLP-PGALRGTDEAAQLLADAIEAGARMVI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +R L     +    +P+R   GYG  P+++E        L+ITVD
Sbjct: 77  VADYDCDGATACAVGVRALRAFGADVGYLVPNRFEYGYGLTPAIVELAARMEPDLLITVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S + +  A + G+  ++ DHH        A  +VNPN+         L   GV+F 
Sbjct: 137 NGIASVEGIAAARSYGMATLITDHHLPGDALPDADVIVNPNQPGCDFPSKALAGVGVMFY 196

Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQ 274
            ++ +   LR           +L  LLDLVAL TV DVV L   NR  V +GL  +   +
Sbjct: 197 TMLALRAELRSRGAFSGRQEPNLGELLDLVALGTVADVVKLDHNNRILVAQGLARMRAGR 256

Query: 275 GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
             PG++AL              +LG+ +GP +NA GR+ + +LG   LISDD      +A
Sbjct: 257 MQPGVRALFAAAGREFERANTFDLGFALGPRLNAAGRLSDMSLGIECLISDDMGRALNIA 316

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
             LD LN+ RR +E  M E A  ++     D  Q + + +    WH G++G++A R+KEK
Sbjct: 317 QDLDKLNRERRSIEQGMQEDALMRLA--GFDPGQTASVSLFEPDWHQGVIGIVAGRIKEK 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
             RP  A +   DG+  GSGRSI    +   +         ++++ GGHAMAAGLT+   
Sbjct: 375 LHRPVVAFARGADGELKGSGRSIANVHLRDALDLVAKRHPDLILRFGGHAMAAGLTIRET 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           ++ R    F++   ++V     T   + DGVL +  + +    ++E    +G G   PVF
Sbjct: 435 DYRRFGGAFEEIVQSLVGTADLTRTLETDGVLESGYMTLDSARLIEQD-IWGQGFAAPVF 493

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
              + ++ + R++   HL++   S++     AI F    +          G  +H    L
Sbjct: 494 E-DHFRVDNQRLLKDKHLKLQL-SKNGVRFDAIRFNFAESA---------GASIHAAYRL 542

Query: 572 CVNYWRGSKRCQLRVLDA 589
             N + G    QL +   
Sbjct: 543 APNEYNGVTNLQLMLEHF 560


>gi|299822816|ref|ZP_07054702.1| single-stranded-DNA-specific exonuclease RecJ [Listeria grayi DSM
           20601]
 gi|299816345|gb|EFI83583.1| single-stranded-DNA-specific exonuclease RecJ [Listeria grayi DSM
           20601]
          Length = 774

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/594 (28%), Positives = 294/594 (49%), Gaps = 30/594 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +  A+ ++ AIP  +A +L  R ++       F +P+ +  + DP
Sbjct: 4   SKYTWKIKQTDE--KQVAALAEELAIPVPLANMLWKRKITTAGQYDKFFHPT-KYDVYDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L + DKA  RI +AI + E+I+I+GDYD DG  S+A++ + L       + YIP+R  
Sbjct: 61  FLLPEMDKAVTRIKKAIASGERILIYGDYDADGVTSIAVLYKTLIKLGAEPSFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +    +G  L+ITVD G  + D ++ A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNSAAFQAAKADGVDLLITVDNGIAALDVMEEAAAIGLDVIVTDHHEGRDTLPKAL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P   +       L   GV + +   +   L  +           LLDLVA+ T+ D
Sbjct: 181 AVIHPRHPESDYPFPDLAGVGVAYKLAHAL---LGAEPT--------ELLDLVAVGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V +GL   R +   GL AL ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQRGLRKLREEPTLGLAALAKKASVKLEAATEETVGFALAPRLNAIGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL++ D +E   LA ++D  N+ R+ + +A+ E+A   V  + + + +  V+
Sbjct: 290 GPADPAADLLLTPDEEEAGFLAEEIDEANKERKAIVAAITEEAVTLV--EENGLAEDRVL 347

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           ++  + W+ G++G++A+RL +++ RP   ++     G   GSGRSI  F +         
Sbjct: 348 ILSKEGWNAGVLGIVASRLVDRYARPVIMLASDPATGIAKGSGRSIPAFHLY--QELDKN 405

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +++  GGH MAAGLT+       L     + A  ++          ++  L  + +++
Sbjct: 406 RALMIAFGGHPMAAGLTIATEQVEELRSQLNQQAA-LLKDEDFQLELIVEDKLALADIDV 464

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE--TLQAIAF 546
           A I  +E+  P+G  NP PVF   N KLQ+ + +     HL+     +++   TL A+ F
Sbjct: 465 AFISKIENLAPFGTDNPKPVFRLQNLKLQNTKRIGGDKTHLKTLLVDENNTSATLDAVGF 524

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                        S    + + G L +N W   ++ QLR++D    +   F  +
Sbjct: 525 GFGDL----AEKVSAQATVEIAGELSINEWNNVRKPQLRLVDMHIEKWQLFDVR 574


>gi|28211395|ref|NP_782339.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani
           E88]
 gi|28203836|gb|AAO36276.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani
           E88]
          Length = 611

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/599 (28%), Positives = 286/599 (47%), Gaps = 40/599 (6%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            RW+             +++   I + + +VLVNR +        F+N SI  L  DP +
Sbjct: 26  KRWMIKCSSVN---IKKLSKATGINEAMIKVLVNRGIKTSYDINRFINASIEDLY-DPFL 81

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DK    I +AI  ++K+ I+GDYD DG  S  ++ R L  C  N   +IPDR  +G
Sbjct: 82  MKDMDKGVELIKKAIEENKKLAIYGDYDADGVTSTVILYRGLKKCGANFIYHIPDRENEG 141

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------ 188
           YG N   +EK  N G ++I++ D G ++ + +++A   G+ V++ DHH++   +      
Sbjct: 142 YGMNKDRIEKLKNNGVEIILSCDNGISAINEIEFAKELGMQVVITDHHELGFIDKDEKRE 201

Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A A++NP R D       LC AG+ F  +  +Y ++  +     + +L  LL   
Sbjct: 202 YILPKADAIINPKREDCTYPFKLLCGAGIAFKFIQALYSVMGIN-----SKELYELLQYA 256

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ T+CDVV L+  NR  V  G+ + +   N GLK LI+   I+   + + ++G++IGP 
Sbjct: 257 AIGTICDVVDLVDENRILVKNGIELLKDTDNLGLKYLIKETGINEKNLNSYHIGFVIGPC 316

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  + L   LL++++  +   LA KL  LN  R+ + S  +E     +  +   
Sbjct: 317 INATGRLETAKLSVELLLAEEDSKALDLAKKLHELNLERQKLTSDGVESVREII--ENSS 374

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           I+   +IVV     H  I G++A +++E++  P+  I+ +   K  GSGRSIE +++   
Sbjct: 375 IKNDKIIVVYNKDIHESIAGIVAGKIREEYNLPAIIIT-KGKEKAKGSGRSIEEYNM--F 431

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + IL   GGH MAAGL+++  N  +L +      +  +      P   ID  L+
Sbjct: 432 EELIKCKEILENFGGHPMAAGLSIKEENIDKLREKLNDQCN--LTEEDIIPKITIDEKLS 489

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQ 542
              V+I  I+ L    P+G GN +PVFA    K+  I ++      L+   +  D   ++
Sbjct: 490 PDKVSIDFINKLSILEPFGKGNSSPVFAEKKLKIDKILLLGKDRNTLKFIIKVDDVRKME 549

Query: 543 AIAFRVY-----------GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            I F              G      +   +  +M    +  +N + G    Q+R++D  
Sbjct: 550 GICFGRGNEFEKTLKKNYGEKYRFIMNNPKDIKMDFIFYPTINEYNGYVNLQMRIIDYR 608


>gi|217970382|ref|YP_002355616.1| single-stranded-DNA-specific exonuclease RecJ [Thauera sp. MZ1T]
 gi|217507709|gb|ACK54720.1| single-stranded-DNA-specific exonuclease RecJ [Thauera sp. MZ1T]
          Length = 563

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/572 (28%), Positives = 269/572 (47%), Gaps = 24/572 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
             +A A      +  ++AR+   R ++       L+ S++ L+P P  LT   +AA  + 
Sbjct: 10  PQQAFARLADAGLHPLLARLYAARGIARADE---LDTSLKNLLP-PEALTGTAEAAILLA 65

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI    +++I  DYD DGA + A+ +R L     + +  +PDR+  GYG  P+++E   
Sbjct: 66  DAIEAGARMVIVADYDCDGATACAVGVRALRAFGADVHYLVPDRVTLGYGLTPAMVEIAA 125

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
                ++ITVD G  S + +  A   G+  ++ DHH        A  +VNPN+       
Sbjct: 126 RLEPDVLITVDNGIASVEGIAAARAHGMATVITDHHLPGDVLPEADVIVNPNQPGCDFPS 185

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
             L   G +F  ++ +   LR+          +L  LLDLVAL TV DVV L   NR  V
Sbjct: 186 KALAGVGAMFYTMLALRAELRERGAFAGAKEPNLAELLDLVALGTVADVVKLDRNNRILV 245

Query: 265 VKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +GL   R     PG++AL           +  +LG+MIGP +NA GR+ + +LG   LI
Sbjct: 246 AQGLARMRAGRLQPGIRALFGLAGRDPARASTMDLGFMIGPRLNAAGRLSDMSLGIECLI 305

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
           +DD      +A +LD LN+ RR +E+ M E+A A++     D    + + +    WH G+
Sbjct: 306 TDDPGRAMNIAQELDKLNRERRSIEAGMQEEALARLA--GFDAGNRATVALFEPDWHQGV 363

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGH 440
           +G++A R+KE+  RP+ A +   DG+  GSGRSI G  +   +      +  ++V+ GGH
Sbjct: 364 IGIVAGRIKERLHRPTIAFARASDGELKGSGRSIPGLHLRDALDLVTKRQPDLIVRFGGH 423

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           AMAAGLT+      R    F++    ++           DG L +    +    ML++  
Sbjct: 424 AMAAGLTIRESELARFDAAFEEVVGELLEPAQLERRIDTDGSLESGYFALDAARMLDN-E 482

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560
            +G G P P+F     +++  R++   HL++   ++ S   +AI F       G+     
Sbjct: 483 IWGQGFPAPLFD-DVFRVERQRLLKDKHLKLEL-ARGSTRYEAIRFNHAEGAAGQ----- 535

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               +H    L +N + G    QL +      
Sbjct: 536 ----IHAAFRLGINEYNGVASVQLMLEHFEAA 563


>gi|119511965|ref|ZP_01631062.1| RecJ exonuclease [Nodularia spumigena CCY9414]
 gi|119463385|gb|EAW44325.1| RecJ exonuclease [Nodularia spumigena CCY9414]
          Length = 727

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/640 (27%), Positives = 306/640 (47%), Gaps = 61/640 (9%)

Query: 1   MNDQAF---LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDY 56
           M DQ+F         +   RW     Q    + LA+     +  I++++L+NR ++  + 
Sbjct: 1   MLDQSFPKPRTPHQGLPNQRWEIYPQQPEFAQNLAMM--TNVSPIISQLLINRGITTPEA 58

Query: 57  AKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115
           A+ FLNP   L++P P     D   +   + QAI +  KI I GDYD DG  S AL++R 
Sbjct: 59  AQGFLNPE-SLILPSPLEEFPDLAMSVELLQQAIASQAKIAICGDYDADGMTSTALLLRS 117

Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175
           L       +  IP R+ DGYG N  ++E+F +EG +LI+TVD G ++Y+ +  A   G++
Sbjct: 118 LRSLGAQVDYAIPSRMHDGYGINKRIVEEFHSEGVELILTVDNGISAYEPIARARELGLN 177

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           VIV DHH +  +  PA A++NP  + + S    +   GV +++ V + + L +   +   
Sbjct: 178 VIVTDHHDIPPKLPPANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGEIKGL--- 234

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---- 291
             +  +L L  L T+ D+ PL G+NR +V +GL    +   PG+KALI+   +       
Sbjct: 235 --VQPMLALFTLGTIADLAPLTGVNRRWVKRGLKHLPKSNLPGIKALIQVAGLQVREEAG 292

Query: 292 -------------------------------ITAENLGYMIGPSINAGGRIGESNLGSRL 320
                                          +  E++G+ +GP INA GRIG+      L
Sbjct: 293 SREQGAGEQGSREQGSREQGARKPSASSAKSLKPEDIGFRLGPRINAIGRIGDPQTVIEL 352

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWH 379
           L +DD       AM+ ++ N +R+ M   + ++A A V  +   ++ +  V+VV    WH
Sbjct: 353 LTTDDMAIALDRAMQCELTNTSRQQMCEEIEQEAIAYVEAEFVSELPKDRVLVVIKPNWH 412

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++G++A+RL E++G P F  ++E++G   GS R I  F++ + + +     +L K GG
Sbjct: 413 HGVIGIVASRLVERYGVPVFIGTYEDEGHIRGSARGIPEFNVFEALQYCH--DLLGKFGG 470

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A G +    N   L     +FA+  +      P+ +ID   + + +N  L   + + 
Sbjct: 471 HKAAGGFSFPAANLEILRSRLCEFANQCLELQHLKPLLRIDAEADFNQLNQPLYQQINAL 530

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES---QDSETLQAIAFRVYGTPLGEF 556
            P G  NP+P+F     ++   ++V   ++++T           ++AIA+R      G++
Sbjct: 531 HPCGMENPDPLFWTSGVQVIEQKIVGKGNIKLTLSQTIHDQQYKIKAIAWR-----WGDY 585

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
                  R+ +   L  N++ G+   +L +L A     H 
Sbjct: 586 FPLPP--RIDIAYKLRENHFNGNTTIELELLGARLANDHL 623


>gi|329121022|ref|ZP_08249653.1| single-stranded-DNA-specific exonuclease RecJ [Dialister
           micraerophilus DSM 19965]
 gi|327471184|gb|EGF16638.1| single-stranded-DNA-specific exonuclease RecJ [Dialister
           micraerophilus DSM 19965]
          Length = 663

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/587 (28%), Positives = 285/587 (48%), Gaps = 31/587 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDP 72
           S ++W      + +       +K  I D +AR+++ R ++ +     FL+ S+  L  +P
Sbjct: 2   SKYKWNLEEKNKEVAVIPDFFKKENISDALARIMIRRGINSEDILIPFLHGSLNEL-ENP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++     A  RI+ AI  +E I+IFGDYDVDG  S +++ RF  +  VN   YIPDR  
Sbjct: 61  FVMKGMKSAVDRILIAINKNENIVIFGDYDVDGITSTSILYRFFKNLGVNVGYYIPDRET 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN + +         L+ITVDCG  +   +    ++ IDVIV DHH    E     
Sbjct: 121 EGYGPNVNAINNLAK-KYDLLITVDCGIAA-AKIFKEASKDIDVIVTDHHMPPDELPDVI 178

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           ++++P++ D       +   GV + +   IY      +           ++LVAL T+ D
Sbjct: 179 SVIDPHQKDCEYHFSEMAGCGVAYSLCRAIYLKKFNKDYFND-------IELVALGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALI--------ERVNISSPITAENLGYMIGPS 304
           VV L   NR +V +GL       N GLKAL+           N    I +EN+ ++I P 
Sbjct: 232 VVSLTDENRIFVKEGLKRLINTENKGLKALLYETGILKENEENQKKMIRSENISFIIAPR 291

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GRI  + +G  LL S +  + + LA KL  +N  R+ +E  +   A+  V  +  D
Sbjct: 292 LNAAGRINHAKIGVELLTSTNDCKAKELAKKLCEINSERQKIEREIYGYAQDIVKKK--D 349

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           + +   IV+ G+ WHPG++G++A+RL + + +PSF IS +  G G GS RSI GF+I + 
Sbjct: 350 LSKEKTIVIAGENWHPGVIGIVASRLLDTYNKPSFVISIKG-GVGKGSCRSIPGFNIYEA 408

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +       IL++ GGH MAAG +++  N     +   K+ +  +      P+ +I+  ++
Sbjct: 409 LKA--HSDILLQFGGHKMAAGFSIKEENIKLFEERMIKYTNEKITDEDCIPILEIEENIS 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQA 543
            + + +  I  L+   P+G  NP P+F      +   R +   +    F + +++  ++ 
Sbjct: 467 LNEITLDFIRSLDILEPFGCDNPKPLFLSKEILVNRTRRIGNENKHFKFSTFNNKEEIEG 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + +             ++G+ + V     ++ W G +  QL   D  
Sbjct: 527 VFWNYENNSFC-----NQGQLIDVVYEPEIHNWYG-EHVQLNCKDIE 567


>gi|114561850|ref|YP_749363.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           frigidimarina NCIMB 400]
 gi|114333143|gb|ABI70525.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           frigidimarina NCIMB 400]
          Length = 574

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 272/565 (48%), Gaps = 21/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++  ++ ++   R V+ D  +  L+  +R     P  +    +AA  I  AI   + I+I
Sbjct: 19  SLSPLLKQLYARRGVNEDNCELVLSKLLR-----PDTMKGLAEAAVIIADAIAAQQSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S ++ M  L        +  IP+R   GYG +P ++     + A ++ITV
Sbjct: 74  VGDFDADGATSTSVCMLALKMMGAKHVDYLIPNRFDYGYGLSPEIVAVAFTKNADVLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ VIV DHH   S    A  +VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKLLGMTVIVTDHHLPGSTLPNADVIVNPNQPGCQFASKSIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  +   LRQ N          +L +LLD+VAL TV DVV L   NR  V  GL   R
Sbjct: 194 YLMSALRAELRQRNWYQQQQITEPNLGTLLDIVALGTVADVVSLDTNNRILVNAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    S   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 SGRCRVGITALLEVAKRSPEKIVAADFGFAVGPRLNAAGRLDEMALGVETLLCEDIMLAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAAR 389
            +A +LD LNQ RR +E+ M ++A   +     + +     I +  + WH G++G+LA+R
Sbjct: 314 RMAAELDGLNQERRELETGMQQEALKSLSKVSLNEEDLPWGIAIFQEDWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447
           +K+++ RP  A +   DG   GS RSI+G  +  ++        G++ K GGHAMAAGL+
Sbjct: 374 IKDRYHRPVIAFADAGDGAIKGSARSIKGLHMRDLLERINGLYPGMITKFGGHAMAAGLS 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++   F +    +      ++     T     DG L++  + +    +L +AGP+G    
Sbjct: 434 LKADVFEQFKQAYDDAVREVLDYEQLTGELLSDGELSSPLMTLDTAFLLRNAGPWGQSFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            P+F     K+   R+V   HL++  E++  S  L  IAF V      +  +    K   
Sbjct: 494 EPLFDG-VFKVVQQRIVGEKHLKLLLETECGSTMLDGIAFNVDLAIWPDATI----KHAR 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591
           V   L VN +RG++  QL V    P
Sbjct: 549 VVYKLDVNEFRGNQTVQLMVDYIEP 573


>gi|73748731|ref|YP_307970.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp.
           CBDB1]
 gi|73660447|emb|CAI83054.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp.
           CBDB1]
          Length = 566

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 29/579 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W                Q    P +++R+L NR ++  + A  FL+P  + L  DP +  
Sbjct: 9   WKLKPALP-----EETGQNFPYPPLISRLLYNRGITTIEAADLFLSPD-KRLNHDPFLFP 62

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D + A  RI +A+   EKI+++GD+D DG  + A++   ++    N   YIP RI +GYG
Sbjct: 63  DMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRITEGYG 122

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
              S +EK   EG  L+I+ DCG T+   ++ A   G+DVIV DHH    E  PAYA++N
Sbjct: 123 LKISALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P           L   GV + ++  +YR L ++++         LLDLVA+ TV D+VP+
Sbjct: 183 PKMPCSTYPCKELAGVGVAYKLIQALYRNLGREDEAK------DLLDLVAIGTVADIVPI 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
           +  NR  V +G+ +   +  PGL  + +        I  E++ +++ P +NA GR+  + 
Sbjct: 237 LDENRYLVKEGVKLLNAEPRPGLIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHAM 296

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G +LL +    + + LA+ L+  N  R+ +    +E+A A + TQ       ++++   
Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQF----PPALLIFSD 352

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
                GI GL+A RL +++ RPS  I         GS RSI  F+I  + +      +  
Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALNHFAHLFS 409

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGHA AAG T+   N          +A  I+  +   P   ID   + S +  A +  
Sbjct: 410 HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSGMELKPFIDIDIDTDLSLLCPATLRE 469

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           LE   P+G  NP PVF      +   R +     HL++  + +       +AFR      
Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQA---- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            + L       + +  +L ++ W G+   +L+++D +P 
Sbjct: 525 -KELSSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAPS 562


>gi|88812412|ref|ZP_01127662.1| single-stranded-DNA-specific exonuclease RecJ [Nitrococcus mobilis
           Nb-231]
 gi|88790419|gb|EAR21536.1| single-stranded-DNA-specific exonuclease RecJ [Nitrococcus mobilis
           Nb-231]
          Length = 566

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/568 (30%), Positives = 264/568 (46%), Gaps = 23/568 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ RV   RNV        L   +  L P P +L++ D AA  +   +    +I+I
Sbjct: 8   NLHPVLRRVYAARNVCGPAD---LEHGLNELHP-PHLLSNVDTAAELLAGILMAQGRILI 63

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S AL +R L        +  +P+R   GYG +P +++        +IITV
Sbjct: 64  VGDFDADGATSTALAIRALRAMGAKAVDYLVPNRFDFGYGLSPEIVQVAQAHRPDVIITV 123

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +  A   GI V+V DHH    +   A  +VNPN   D      L   GV+F
Sbjct: 124 DNGISSLAGVAAANAAGIQVVVTDHHLPGPQLPDAAVIVNPNLPGDPFPSKSLAGVGVIF 183

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ +   LR             +L  LLDLVAL TV D+  L   NR  + +GL   R
Sbjct: 184 YVMLALRTYLRAAGWFTSRGIAEPNLAQLLDLVALGTVADMAVLDRNNRILLEQGLRRMR 243

Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             Q  PG+ AL+         + A +LG+ +GP +NA GR+ + + G   L++D  Q   
Sbjct: 244 AGQACPGILALLAVAGRTCHRLVAADLGFAVGPRLNAAGRLEDMSRGVECLLTDCPQSAS 303

Query: 331 MLAMKLDVLNQNRRLMESAMLEQA---EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
            +A +LD LN+ RR +E  M EQA      +  +         + +    WH G++G+LA
Sbjct: 304 TIARELDALNRQRRAIEREMQEQALASLEVLQNEFATASLPRGLCLLDAGWHQGVIGILA 363

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445
           +R+K++  RP  A +   DG   GS RS+ G  I  ++        G++VK GGHAMAAG
Sbjct: 364 SRIKQRLHRPVIAFAPAADGNLRGSARSVPGLHIRDLLERVSSRNPGLIVKFGGHAMAAG 423

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+   ++ R    F+     +    I   +   DG L    ++++L   L  AGP+G G
Sbjct: 424 LTLHEGDYERFRLAFEATVTEMASEEIFERIVLTDGELEPDQLDLSLAQTLRVAGPWGQG 483

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
            P PVF      +   R+V   H++   ++ Q+   L AIAF        +         
Sbjct: 484 FPEPVFDG-VFAVVDRRIVGEEHVRFRLQAFQNETMLNAIAFSAARHGWDKVQ-----GV 537

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +   L VN +RG +  QL +    P 
Sbjct: 538 VRLAFRLDVNEFRGRQSLQLVIEHLEPA 565


>gi|309785301|ref|ZP_07679932.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae
           1617]
 gi|308926421|gb|EFP71897.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae
           1617]
          Length = 530

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/530 (31%), Positives = 266/530 (50%), Gaps = 16/530 (3%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132
            L+  +KA   +  A     +I++ GD+D DGA S AL +  +      N +  +P+R  
Sbjct: 6   QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 65

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYG N  ++++    GAQLI+TVD G +S+  +++A + GI VIV DHH        A 
Sbjct: 66  DGYGLNLEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 125

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248
           A++NPN  +       L   GV F +++ +   LR             +L  LLDLVAL 
Sbjct: 126 AIINPNLRNCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 185

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306
           TV DVVPL   NR    +G+   R  +  PG+KAL+E  N     + A +LG+ +GP +N
Sbjct: 186 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 245

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDI 365
           A GR+ + ++G  LL+ D+  E  +LA +LD LNQ R+ +E  M  +A       +    
Sbjct: 246 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRD 305

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
                + +    WH G+VG+LA+R+KE+F RP  A +   DG   GSGRS++G  +   +
Sbjct: 306 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSVQGLHMRDAL 365

Query: 426 SFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                   G+++K GGHAMAAGL++E   F      F +     +   +       DG L
Sbjct: 366 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPL 425

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQ 542
           + + + + +  +L  AGP+G   P P+F   + +L   R+V   HL++  E       L 
Sbjct: 426 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 484

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            IAF V      +    +  + + +   L +N +RG++  Q+ + +  P+
Sbjct: 485 GIAFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 530


>gi|281356416|ref|ZP_06242908.1| single-stranded-DNA-specific exonuclease RecJ [Victivallis vadensis
           ATCC BAA-548]
 gi|281317108|gb|EFB01130.1| single-stranded-DNA-specific exonuclease RecJ [Victivallis vadensis
           ATCC BAA-548]
          Length = 569

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/579 (29%), Positives = 277/579 (47%), Gaps = 16/579 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W    G     +A  I QK ++P  +A     R +  D  +DFLNP +  L  DP   
Sbjct: 4   KNWKL-AGNNLDEQANRIQQKFSLPHPIALYFAARGIGEDNIQDFLNPRLANL-TDPYRF 61

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A+RR+  AI + E I+I GDYD DG  + AL+   L       + +IP R  DGY
Sbjct: 62  PGIQEASRRLWDAIAHKEPILIHGDYDTDGITASALLALVLRQNGGIVHSFIPHRFDDGY 121

Query: 136 GPNPSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           G  P  ++K ++     ++++TVDCG TS DA+  A  +GIDVIV DHH+  SE   A A
Sbjct: 122 GFTPESLQKALDTFGPCKVLVTVDCGITSCDAVNDAVERGIDVIVTDHHEAGSELPKALA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP    +L     L  AG  F +     +  R+ N       L  +LD VAL TV D+
Sbjct: 182 VINPKVYPELEDLQLLSGAGAAFKLSHAFIKYGREHNLGGFQTRLEEVLDYVALGTVADI 241

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           VPL+G NR  V  G+   R+Q  PG++ALIE   + S +T  ++ + + P INA GR+G+
Sbjct: 242 VPLLGENRVMVKFGIETLRKQLRPGVRALIESSKLRSELTPADITFRLAPRINAAGRVGD 301

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N+  +LL S+   E    A +L+  N+ R+  E  + ++A  ++       Q    ++V
Sbjct: 302 ANVALQLLESEHIVEAYQCASQLETYNRVRQEKEQEIYQEACEQIERNL-AWQSEYSLLV 360

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++A+RL   + RP+  ++ + D    GSGRSI   ++  +   +    +
Sbjct: 361 AGRDWHQGVIGIVASRLARDYNRPTIVLTIQGD-VAYGSGRSIACLNL--VEVLSHTSEL 417

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH MA G+ ++        +   +     + +         DG  +   +     
Sbjct: 418 LDRYGGHPMAVGIGLKADRIADFFEAMDREVRKQISSADLEDFISYDGEASLHELTPEFF 477

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             L    P+G  N  P++ F   ++Q   VV  AH + T   +  + +  IAF    +  
Sbjct: 478 KYLAMLSPFGHSNVKPIYRFNEVQVQRCSVVGGAHTRGTLRGRTGQ-IDFIAFNRPSSAF 536

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                   GK + V     +N  +G +  QL ++D   V
Sbjct: 537 -------YGKTLDVLATPQLNRHQGLEIPQLNIIDIREV 568


>gi|56808327|ref|ZP_00366088.1| COG0608: Single-stranded DNA-specific exonuclease [Streptococcus
           pyogenes M49 591]
          Length = 736

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE   +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEARAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|147669497|ref|YP_001214315.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp.
           BAV1]
 gi|146270445|gb|ABQ17437.1| exonuclease RecJ [Dehalococcoides sp. BAV1]
          Length = 566

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 29/579 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W                Q    P +++R+L NR ++  + A  FL+P  + L  DP +  
Sbjct: 9   WKLKPALP-----EETGQNFPYPPLISRLLYNRGITTIEAADLFLSPD-KRLNHDPFLFP 62

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D + A  RI +A+   EKI+++GD+D DG  + A++   ++    N   YIP RI +GYG
Sbjct: 63  DMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRITEGYG 122

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
              S +EK   EG  L+I+ DCG T+   ++ A   G+DVIV DHH    E  PAYA++N
Sbjct: 123 LKISALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P           L   GV + ++  +YR L ++++         LLDLVA+ TV D+VP+
Sbjct: 183 PKMPCSTYPCKELAGVGVAYKLIQALYRNLGREDEAK------DLLDLVAIGTVADIVPI 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
           +  NR  V +G+ +   +  PGL  + +        I  E++ +++ P +NA GR+  + 
Sbjct: 237 LDENRYLVKEGVKLLNAEPRPGLIEMAQLSRLHLGEIETESISWIMAPRLNAAGRLEHAM 296

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G +LL +    + + LA+ L+  N  R+ +    +E+A A + TQ       ++++   
Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQF----PPALLIFSD 352

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
                GI GL+A RL +++ RPS  I         GS RSI  F+I  + +      +  
Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALNHFAHLFS 409

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGHA AAG T+   N          +A  I+  +   P   ID   + S +  A +  
Sbjct: 410 HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSVMELKPFIDIDIDTDLSLLCPATLRE 469

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           LE   P+G  NP PVF      +   R +     HL++  + +       +AFR      
Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQA---- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            + L       + +  +L ++ W G+   +L+++D +P 
Sbjct: 525 -KELSSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAPS 562


>gi|255527534|ref|ZP_05394401.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           carboxidivorans P7]
 gi|296187920|ref|ZP_06856312.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           carboxidivorans P7]
 gi|255508772|gb|EET85145.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           carboxidivorans P7]
 gi|296047046|gb|EFG86488.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           carboxidivorans P7]
          Length = 592

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/604 (28%), Positives = 283/604 (46%), Gaps = 46/604 (7%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W+          A  I +   I +I+A +L+NR V + D  + F+NPS+  L  DPL+
Sbjct: 3   KKWMLKRCNGD---ARNIAKNLGISEILACILINRGVKTEDKIRKFMNPSLEYLY-DPLL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DK    I  AI    KI+++GDYD DG  S  ++   L  C      +IPDRI +G
Sbjct: 59  MKDMDKGTSIIKNAIVKKNKIVVYGDYDADGIISTYILYSALVECGAEVKYHIPDRITEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE------- 187
           YG N   ++    EG   IIT D G ++ + ++ A    + V++ DHH +          
Sbjct: 119 YGINSESIKVLKEEGYDTIITCDNGISALEQIKIAKELDMTVVITDHHDIPFTEAADGEK 178

Query: 188 ---EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A++NP + D       LC AGV F  + ++Y  +  D K          ++ 
Sbjct: 179 NFAIPEADAIINPKQEDCNYPFKSLCGAGVAFKFVQVLYSKMEIDEKKS-----YKFIEY 233

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303
            A+ T+CDVV L+  NR     GL +  +  N GLKALI+   +    I + ++G++IGP
Sbjct: 234 AAIGTICDVVDLLDENRIIAKNGLDMLNKTENIGLKALIKETALDEKKINSYHIGFVIGP 293

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+  + L  +LL+ +D +E +  A KL  LN  R+ M    + Q    +  +  
Sbjct: 294 CINATGRLDSATLALKLLLCNDDEEAKCFAKKLHELNVQRQNMTMDSVNQIIETI--ENS 351

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           +++   V+V+     H  I G++A RLKEK+  PS  I+  E     GSGRSIE +++  
Sbjct: 352 NMKNDKVLVIYKKDVHESIAGIVAGRLKEKYNVPSIVITKGEK-TPKGSGRSIEEYNM-- 408

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                  + +L K GGH +AAGL++E  N  +            +     TP  +ID  L
Sbjct: 409 FHELTRCKDMLKKFGGHPLAAGLSIEEENIDKFRKVLNDNC--CLTKDDITPKIRIDKQL 466

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDS-ET 540
           + + VN  LI+ ++   P+G  N +P FA  N  +  +  +      ++    + ++ E 
Sbjct: 467 SLNQVNFDLINEIQKLEPFGKSNSHPYFAEKNINVFRVYFIGKEKNVVKFFCRNTNNFEK 526

Query: 541 LQAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRV 586
           L AI F   G    + + +S G+              ++       +N + G++  QL V
Sbjct: 527 LDAICFD-GGDKFKQIIEESYGEKRLKEILQSNIANLKLDFIFSPEINEFNGNRSLQLVV 585

Query: 587 LDAS 590
            D  
Sbjct: 586 KDFR 589


>gi|262282434|ref|ZP_06060202.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           2_1_36FAA]
 gi|262261725|gb|EEY80423.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp.
           2_1_36FAA]
          Length = 739

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W         N      +K  +    A +L  R V  + A ++FL PS+  L  DP
Sbjct: 4   SKYDWQFATNFTDENFLKK-AKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D ++A  RI  AI N E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI      LIITVD G    +A++ A + G+DVIV DHH +  E   A
Sbjct: 122 DGYGPNSSVYKYFIENQGVSLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPKELPNA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P           L   GV F +   +   ++           + LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHSRADYPFKQLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L +   I    +  E +G+ + P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ ++  N  R+ +   + E+A+  +        +  V
Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+  + W+PG++G++A RL E+  +P   ++  EDG   GS RSIE  +I    +    
Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGHA AAG+T+E      L D    F  +    L       +D  L    + +
Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLTELSDILTAFILDNDLDLTGKTALYLDEELYLPELTL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   E   P+G  N  P+F   + K+ ++R +    +HL++    +D  T + +AF  
Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNVRTMGAGNSHLKLKISQED-ATFEVVAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      ++ K + +   L VN W G    QL ++DA       F  +
Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568


>gi|291549197|emb|CBL25459.1| exonuclease RecJ [Ruminococcus torques L2-14]
          Length = 574

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/584 (29%), Positives = 293/584 (50%), Gaps = 28/584 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLIL 75
           +W   + +   N    I +K+ I  I+AR++ NR+V  D A DF LN ++  L  D L++
Sbjct: 3   KWFVAMKKADFN---GIAEKYQISPIIARLMRNRDVIGDEAIDFYLNGTVEDLY-DGLLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+A   + + I   +KI + GDYD+DG  +  ++ + L+    + +  IPDRI DGY
Sbjct: 59  KDMDRAVDILKEKIEEGKKIRVIGDYDIDGVNATYILQQGLAGLGADVDTDIPDRIKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L+++ + +    IIT D G  +   + Y    G+ ++V DHH+V           
Sbjct: 119 GLNQMLIDRALEDDVDTIITCDNGIAAMSEIAYGKENGMTIVVTDHHEVPYLEENGEKKH 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+V+P+R D       LC A V + ++ ++YR+  +  +   +    SL++ VA
Sbjct: 179 LLPPADAVVDPHRADCEYPFKGLCGAAVAYKLVEVLYRVSGKSEQEVEHLQ-ESLMENVA 237

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
           +AT+ DV+ L+G NR +V KGL + +   N GL AL++   + +  +   ++G++IGP I
Sbjct: 238 IATIGDVMDLVGENRVFVKKGLELLKTTKNEGLHALMQCTGVDTANLNTYHIGFVIGPCI 297

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NAGGR+  +     LL + + +E   LA  L  LN +R+ M    +E+A  ++  +    
Sbjct: 298 NAGGRLDTAKRALELLNASNRREAVTLAADLKELNDSRKEMTEEGVEEAVRQI--ESSSW 355

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +   V+VV     H  I G++A R+KE++ RP+F ++  E G   GSGRSIE +D+   +
Sbjct: 356 KDDQVLVVYLPECHESIAGIIAGRIKERYYRPTFVLTKGEAGV-KGSGRSIEAYDMFAEM 414

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           S   E  +  K GGH +AAGL++E  N         + A   +          ID  L  
Sbjct: 415 SRCRE--LFTKFGGHKLAAGLSLEEENVEVFRKRINELAD--LTEEDLQMKVSIDMRLPF 470

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             +N  LI  L+   P+G GN  P+FA    ++   R+       L+   E Q    ++A
Sbjct: 471 PYINEELIHELKILEPFGKGNGKPLFAESKLRVIQPRIFGKNRNVLKCRLEDQQGNQMEA 530

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F      L +     + + M  T +  +N + G +  QL ++
Sbjct: 531 VYFGEVEDCLRQM---EKKQIMSFTYYPSINEYMGRRTIQLTIV 571


>gi|209559273|ref|YP_002285745.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes NZ131]
 gi|209540474|gb|ACI61050.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes NZ131]
          Length = 736

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE   +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEARAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VNYW G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNYWNGNTSLQFMLVDARV 559


>gi|94994217|ref|YP_602315.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS10750]
 gi|94547725|gb|ABF37771.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS10750]
          Length = 736

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++  +R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQVRTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|153954758|ref|YP_001395523.1| hypothetical protein CKL_2140 [Clostridium kluyveri DSM 555]
 gi|219855222|ref|YP_002472344.1| hypothetical protein CKR_1879 [Clostridium kluyveri NBRC 12016]
 gi|146347616|gb|EDK34152.1| RecJ [Clostridium kluyveri DSM 555]
 gi|219568946|dbj|BAH06930.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 595

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/603 (30%), Positives = 286/603 (47%), Gaps = 44/603 (7%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            RW+     +       I++K  I +I+A +L NR +  +   +DFLNPS+  L  DPL 
Sbjct: 3   RRWMLKRCNKD---VKYISKKAGISEIMATILANRGIVEEKEIRDFLNPSVDNLQ-DPLS 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +K    I +AI +++ I I+GDYDVDG  S  ++   L  C      +IPDRI +G
Sbjct: 59  MKDMEKGTDIIYKAIMDNKNIAIYGDYDVDGVMSTYILYCGLLKCGAKVKYHIPDRIEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----------QV 184
           YG N   +EK   EG ++IIT D G ++   ++ A   GI V++ DHH          + 
Sbjct: 119 YGINIKSIEKLKEEGCEVIITCDNGISALAQVKRAKELGIAVVITDHHHIFFEERENGEK 178

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A+++P + D      HLC AGV F  + ++Y+                 +  
Sbjct: 179 TYLIPEADAVIDPKQEDCSYPFKHLCGAGVAFKFIQVLYKKFNFKK-----EQCYKFIQY 233

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303
            A+ T+CD+V LI  NR  V KGL +     N GLKALIE  ++    IT+ ++G++IGP
Sbjct: 234 AAIGTICDIVDLIDENRIIVKKGLDMINNTENLGLKALIEETSLKGKNITSYHIGFIIGP 293

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+  + L   LL+  D+++   LA KL  LN  R+ M    L     KV  +  
Sbjct: 294 CINATGRLKSAVLALELLLCKDAEKAGKLAKKLHELNIQRQDMTVKSLNNIIDKV--ENS 351

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           ++++  V+VV     H  I G++A RLK+++  PS  I+        GSGRSIEG+++  
Sbjct: 352 NLKRDKVLVVYEKETHESIAGIVAGRLKDRYNVPSIVIT-SGRIMSKGSGRSIEGYNM-- 408

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                  + ++ K GGH +AAGL++   N  RL +   K  +  +      P  +ID  L
Sbjct: 409 FEELVKCKELMEKFGGHPLAAGLSITEENINRLRENLNKNCN--LTEEDLIPKIRIDKKL 466

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDS-ET 540
               ++  +++ ++   P+G GN  P+F   N  +  I  +      L++    ++S + 
Sbjct: 467 PLENISFHVLEDIKKLEPFGKGNSTPLFGEKNIDVFKIYFMGKDKNVLKLFCRLKNSLKK 526

Query: 541 LQAIAFRVYGTPLGEFLM-------------QSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + AIAF          L                   +M      C+N + G K  QL + 
Sbjct: 527 IDAIAFDGGEKFKKLILEVYGSSGANKIFNNNFTSLKMDFIFLPCINEFNGVKNLQLVIK 586

Query: 588 DAS 590
           D  
Sbjct: 587 DFR 589


>gi|139473914|ref|YP_001128630.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           str. Manfredo]
 gi|134272161|emb|CAM30406.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           pyogenes str. Manfredo]
          Length = 736

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L D   +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDSLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|71903372|ref|YP_280175.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           MGAS6180]
 gi|71802467|gb|AAX71820.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           MGAS6180]
          Length = 736

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 273/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|154249033|ref|YP_001409858.1| single-stranded-DNA-specific exonuclease RecJ [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152969|gb|ABS60201.1| single-stranded-DNA-specific exonuclease RecJ [Fervidobacterium
           nodosum Rt17-B1]
          Length = 989

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/577 (29%), Positives = 291/577 (50%), Gaps = 24/577 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW     Q   +    ++++  +   VA++LV R + + + AK FLNP+ R  +  P +L
Sbjct: 2   RWELR--QVDEHLVQELSERLGVNKFVAKLLVLRGIKTEEDAKRFLNPT-RQTLRSPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA   +++A  N EK++I GDYDVDG    A++  FLS    N + YIP R+ +GY
Sbjct: 59  KDMEKAVEILLRARDNGEKVIIHGDYDVDGITGTAVLYTFLSENGWNVDYYIPKRVDNGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G  P  +E+ + +G + I+TVDCG T+++A+  A   G+++++ DHHQ K     A A+V
Sbjct: 119 GIQPQFVEEIVLKGFKTILTVDCGITAFEAVDKAKELGLNIVITDHHQPKETLPNADAIV 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP R DD          GV + ++  +   +     V        LLDLVAL TV D+V 
Sbjct: 179 NPKRPDDEYPFKEFAGVGVAYKLITALAEKMNIPPSVT-----DELLDLVALGTVADMVE 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L+  NR  V +GL         G+  LI+++ I + I+  ++GY I P +NA GR+   +
Sbjct: 234 LLDENRYIVREGLKRLNNTAKLGIVRLIQKIGI-ATISTRDIGYRIAPKLNAAGRLDSPD 292

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              +L+++ D      L   L   N  R+ +E+ +  +A   +  + +++    ++V  G
Sbjct: 293 DAFKLIVTKDEASATELVEILLGYNVTRQGIEAKIYNEAVQMI--ESNNLDSLPIVVAYG 350

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++G++A RL   + +P   IS  EDG G GS RS++G +I +++       I  
Sbjct: 351 YGWHLGVIGIVATRLVHLYNKPVMVIS-IEDGVGRGSARSVQGVNIIELLER--FRDIFE 407

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MA G +++      L    ++        +    V  +D  ++   +N  L+  
Sbjct: 408 DFGGHTMALGFSLKEEKIPELIKAIREKIRE--EDIKVEEVIAVDEKISVDEINEDLLKS 465

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPL 553
           +E   PYG GNP PVF   N  ++  ++       +++T +  +S +++ + F +  +P 
Sbjct: 466 IELLEPYGHGNPEPVFLIQNSPVERFKIFGETGYNIRLTLK-GNSNSIEGVGFGLKFSPN 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             + +Q +  RM V G+L      G    QL VLD  
Sbjct: 525 EMYGIQPQFIRMDVVGNLRT----GEAGPQLNVLDLK 557


>gi|226941314|ref|YP_002796388.1| RecJ [Laribacter hongkongensis HLHK9]
 gi|226716241|gb|ACO75379.1| RecJ [Laribacter hongkongensis HLHK9]
          Length = 563

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/561 (29%), Positives = 266/561 (47%), Gaps = 25/561 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++AR+   R +        L+  +  L+P    L + +  ARR+  AI   E++++
Sbjct: 21  GVSPLMARLFAARGI---EHASQLDAGLARLVP-FSRLRNAEAMARRLADAIARRERLLV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + AL ++ L       +  +P+R   GYG  P ++         +++TVD
Sbjct: 77  VADYDADGATACALAVKGLRAFGATVDFIVPNRFEYGYGLTPEIVGLAAERAPDILLTVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G++V+V DHH    E +P   +VNPN+        HL   GV+F 
Sbjct: 137 NGIASVAGVNAARALGMEVLVTDHHLPGDE-LPEALIVNPNQPGCDFPSKHLAGCGVMFY 195

Query: 218 VLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQ 274
           VL+ +   LR           +L   LDLVAL TV DVV L   NR  V +GL   R  +
Sbjct: 196 VLMALRAELRARGAFATGGEPNLAQWLDLVALGTVADVVRLDDNNRILVEQGLRRMRGGR 255

Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
            +PG+ AL           ++ +LG+M+GP +NA GR+ +   G  +L+++       +A
Sbjct: 256 ASPGIAALFAASGRPIAKASSFDLGFMLGPRLNAAGRLDDMTFGIEMLLAEREDSALEMA 315

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +LD +N+ RR +E  M ++A  ++     D  +   + +  D WH G+VG++A+RLK++
Sbjct: 316 RELDRMNRTRREIEHGMQDEATLQLA--GFDPAERFTLSLYRDDWHQGVVGIVASRLKDR 373

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
           F RP+   +  + G+  GSGRSI GF +   +      E G++ K GGHAMAAGLTV   
Sbjct: 374 FHRPAIVFAPGDAGEIKGSGRSIAGFHLRDALDLVSKREPGLIRKFGGHAMAAGLTVLEA 433

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +  R    F++ A   +     T   + DG L  + + +     L +   +G G P P F
Sbjct: 434 DLPRFSAAFEQVAREWLDEAALTRRIETDGALAVTELALDTAREL-ALTVWGQGFPPPSF 492

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
                ++   R+V   HL++T   +D    +A+ F                +R+     L
Sbjct: 493 -SDVFRVLEQRIVGGKHLKLTL-GKDGGEFEAMLFNHSEF---------LPERIDAVFRL 541

Query: 572 CVNYWRGSKRCQLRVLDASPV 592
            VN WRG +  QL +      
Sbjct: 542 NVNEWRGVELMQLYIDHWRAA 562


>gi|15674946|ref|NP_269120.1| putative single-strand DNA-specific exonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71910540|ref|YP_282090.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           MGAS5005]
 gi|94992296|ref|YP_600395.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS2096]
 gi|13622090|gb|AAK33841.1| putative single-strand DNA-specific exonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71853322|gb|AAZ51345.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           MGAS5005]
 gi|94545804|gb|ABF35851.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS2096]
          Length = 736

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++ +R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|307688899|ref|ZP_07631345.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           cellulovorans 743B]
          Length = 598

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/612 (28%), Positives = 280/612 (45%), Gaps = 50/612 (8%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW           A  +     I  I+A++L +R +   D  + FL  SI   M DP +
Sbjct: 3   KRWTIKPM---TKAAQKLATDSFISPIIAKLLWDRGIRDKDEVEKFLKGSIDE-MYDPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D A   I++AI+  +KI+I+GDYDVDG  S  +M + L         +IPDR  +G
Sbjct: 59  MKDMDLATSIIIKAIFEEKKIVIYGDYDVDGVTSTVIMFKALKRVGARVTYHIPDREKEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--------- 185
           YG N   +E    +G  +IITVD G  + + ++YA   G  V++ DHH +          
Sbjct: 119 YGLNKKSIEVLREQGNSVIITVDNGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGER 178

Query: 186 -SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A++NP R D      +LC A + F   V ++   + D K   N      L  
Sbjct: 179 KEILPNADAIINPKRSDCNYPFKYLCGASIAFKFAVALFIKRKIDYKEAYN----EYLQF 234

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGP 303
             +ATVCDVV LI  NR  +   L       N G+ +L +   ++   I+   +G+++GP
Sbjct: 235 AGIATVCDVVDLIDENRVILKNALKSINNSKNIGINSLRKFTLSLDKEISVYAIGFVMGP 294

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+  + +   LL++ + +  E LA +L  LN+ R+ M +  +E+   ++  +  
Sbjct: 295 CINATGRLENAKMAVELLLTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEI--ELG 352

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           D     V+VV     H  I G++A R++EK+ +P+  ++   +G   GS RSIE ++I  
Sbjct: 353 DYYNDKVLVVYEPTIHESIAGIIAGRIREKYNKPTIILTKAVEGV-KGSARSIEEYNIY- 410

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                  + +L K GGH MAAG++++  N   L +        I+      P   ID  L
Sbjct: 411 -EELLKCKNLLDKFGGHPMAAGMSLKEENIEPLRETLNGKC--ILTDEDMIPKVVIDFPL 467

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541
           ++  ++ ++I  +    P+G GN  P+F   N  L+   V       L++ F  Q    +
Sbjct: 468 SSHKIDDSIIYDIGELAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQ-GRRI 526

Query: 542 QAIAF------------RVYGTPLGEFLMQSRG--------KRMHVTGHLCVNYWRGSKR 581
            A+AF                   GE L  S G         R+ +      N ++G+K+
Sbjct: 527 DAVAFKKYLELMEIIEENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKK 586

Query: 582 CQLRVLDASPVE 593
            QL+V +    +
Sbjct: 587 IQLKVHELRISK 598


>gi|83816027|ref|YP_446338.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber
           DSM 13855]
 gi|83757421|gb|ABC45534.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber
           DSM 13855]
          Length = 584

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/591 (28%), Positives = 277/591 (46%), Gaps = 23/591 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHA-IPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           +RW      E  +    + ++   +P  +AR L  R V+  + AK F       L  DP 
Sbjct: 5   YRWTPRALDE-PDVVPRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALH-DPF 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            +   D AA R+  AI +   ++++GDYDVDG    AL   FL    V+ + +IPDR  D
Sbjct: 63  GMAGMDAAAARLSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGVDVSFFIPDRYED 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG     ++     GA L++ +DCG T+++   YA   G+D+I+ DHH  K     A A
Sbjct: 123 GYGLCRRGLDAAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEALA 182

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P R DD      L   G+ F ++  +     +             LDL+AL+T  D+
Sbjct: 183 VLDPKRPDDDYPFEELPGCGLAFKLVQAVLAHRDEAPDAA-----YEYLDLLALSTASDI 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINAGGRI 311
           VPL G NR  + +GL   +R   PG++AL +  ++         N+ + +GP INA GR+
Sbjct: 238 VPLYGENRVLMAEGLEALQRSTRPGVQALADAADLDLQTVTSTGNIVFTLGPRINAAGRM 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             ++    LL++   +E E  A +L+ LN+ RR ++  + E+A  +   Q         +
Sbjct: 298 EHASSAVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEEEAVERAERQITSRS-PHAL 356

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WH G++G++A+ + E+F +P+  ++   +    GS RSIEG +I + ++    E
Sbjct: 357 VLYDPDWHLGVIGIVASSIVERFHKPTILLTHNGEAV-KGSARSIEGINIYEALADC--E 413

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-- 489
            +L + GGH  AAG+++E  +     D F       V   + TP  K+D  ++   +   
Sbjct: 414 DVLTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDASVDLDTIGSV 473

Query: 490 -IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD---SETLQA 543
                 +L+  GP+G  NP PVF   +  + S R V    +HL+     +D    +T  A
Sbjct: 474 ADRFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRDASSGQTYDA 533

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           I F +          Q  G  + +   L  N W G    QL+  D    E 
Sbjct: 534 IGFGMGEKLSVLRESQDTGTPVELLFSLEENTWNGRTTLQLKARDVRLDEA 584


>gi|306827481|ref|ZP_07460764.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pyogenes ATCC 10782]
 gi|304430279|gb|EFM33305.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pyogenes ATCC 10782]
          Length = 736

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++ +R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|307266557|ref|ZP_07548089.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918411|gb|EFN48653.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 815

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/576 (30%), Positives = 293/576 (50%), Gaps = 23/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+       +     I +++ +  I+A +L +  ++    K+FLNP ++ L   P +L
Sbjct: 9   YRWILKE-NPNLQLTQEIQREYGLHKIIADILSS-KLNAQEVKNFLNPDLKDLY-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I   + I I+GDYDVDG  + +++   L       + YIP+R+V+GY
Sbjct: 66  RGIKEAKELIQQHIALKDLITIYGDYDVDGITATSVLYLTLKKLGAKVDYYIPERLVEGY 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAQFLGIDVIITDHHSIPKEIPQADVVI 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+  D       L   GV F +   +              +   LLD+V++ T+ D+VP
Sbjct: 186 NPHLPDIEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKALI+     +  I   ++G+++ P +NA GR+  +
Sbjct: 235 LLGENRIIVKEGLKRLNETRNIGLKALIKASGLQNIEIDEYHVGFILAPRLNAAGRLRSA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS D +E+E +A  L+  N  R+ +E+ +L++A  K+  +  D+ +  VIV+ 
Sbjct: 295 EAAVRLLISQDEKEVEEIAEYLNQENLKRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ K + +   +  L
Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  +    ++I +  
Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            L+   P+G+ NP P F F    +  +  +N    +     +D    + + F V      
Sbjct: 471 QLQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIAQKDKFGYELMLFDVSDQGND 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G  + V G + +N W G +   + V D  
Sbjct: 531 ----VKIGDIIDVVGSIEINSWNGIESVMINVKDLR 562


>gi|294508276|ref|YP_003572334.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber
           M8]
 gi|294344604|emb|CBH25382.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber
           M8]
          Length = 626

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/591 (28%), Positives = 277/591 (46%), Gaps = 23/591 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHA-IPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           +RW      E  +    + ++   +P  +AR L  R V+  + AK F       L  DP 
Sbjct: 47  YRWTPRALDE-PDVVPRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALH-DPF 104

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            +   D AA R+  AI +   ++++GDYDVDG    AL   FL    V+ + +IPDR  D
Sbjct: 105 GMAGMDAAAARLSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGVDVSFFIPDRYED 164

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG     ++     GA L++ +DCG T+++   YA   G+D+I+ DHH  K     A A
Sbjct: 165 GYGLCRRGLDAAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEALA 224

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P R DD      L   G+ F ++  +     +             LDL+AL+T  D+
Sbjct: 225 VLDPKRPDDDYPFEELPGCGLAFKLVQAVLAHRDEAPDAA-----YEYLDLLALSTASDI 279

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINAGGRI 311
           VPL G NR  + +GL   +R   PG++AL +  ++         N+ + +GP INA GR+
Sbjct: 280 VPLYGENRVLMAEGLEALQRSTRPGVQALADAADLDLQTVTSTGNIVFTLGPRINAAGRM 339

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             ++    LL++   +E E  A +L+ LN+ RR ++  + E+A  +   Q         +
Sbjct: 340 EHASSAVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEEEAVERAERQITSRS-PHAL 398

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WH G++G++A+ + E+F +P+  ++   +    GS RSIEG +I + ++    E
Sbjct: 399 VLYDPDWHLGVIGIVASSIVERFHKPTILLTHNGEAV-KGSARSIEGINIYEALADC--E 455

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-- 489
            +L + GGH  AAG+++E  +     D F       V   + TP  K+D  ++   +   
Sbjct: 456 DVLTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDASVDLDTIGSV 515

Query: 490 -IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD---SETLQA 543
                 +L+  GP+G  NP PVF   +  + S R V    +HL+     +D    +T  A
Sbjct: 516 ADRFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRDASSGQTYDA 575

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           I F +          Q  G  + +   L  N W G    QL+  D    E 
Sbjct: 576 IGFGMGEKLSVLRESQDTGTPVELLFSLEENTWNGRTTLQLKARDVRLDEA 626


>gi|94990295|ref|YP_598395.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS10270]
 gi|94543803|gb|ABF33851.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS10270]
          Length = 736

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++ +R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L D   +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ  ++   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKDSFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|162146848|ref|YP_001601309.1| single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785425|emb|CAP54974.1| putative single-stranded-DNA-specific exonuclease recJ
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 574

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/577 (37%), Positives = 306/577 (53%), Gaps = 9/577 (1%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
           L   G    L I Q+  + DIV ++L  R +    A  FL+P++R LMPDP  L D D A
Sbjct: 2   LADAGGRVGLMIAQQAGVSDIVGQMLAARGLDGRSAATFLDPTLRALMPDPSALRDMDPA 61

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R+  A+   E + +FGDYDVDGA + AL+ + L         ++PDR+ +GYGPN   
Sbjct: 62  AERLADAVRRGETVAVFGDYDVDGACAAALVTQLLRDLGCPVLTHVPDRMTEGYGPNAPA 121

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           +E     GA L++ VDCG+ + D L     +  D+IV+DHH+ +    P  A VNPNRLD
Sbjct: 122 LEALAARGATLVVCVDCGTAAGDILAGLAGR-ADIIVLDHHKAEGPPPPVLATVNPNRLD 180

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGL 259
             SGQ  LCAAGV FL  V   R LR+          DL++ LD+VALATVCDV+PL  L
Sbjct: 181 CTSGQRGLCAAGVAFLAAVATVRTLRRAGWFAARPEPDLMAFLDIVALATVCDVMPLTDL 240

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           NRA V +GL +  R+   GL AL+E      P++A   G+ +GP INAGGRI ES LG  
Sbjct: 241 NRALVTQGLKILARRQRTGLDALLEVAGARDPLSAFTCGFALGPRINAGGRIAESGLGLD 300

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL+ DD+ E   LA +LD +N+ R+ +E+ +L++A  +  +Q        V+++ G  WH
Sbjct: 301 LLLCDDAAEARRLAERLDAVNRRRQTVETTILDRAMDEAASQRAA--GRGVLLLSGRDWH 358

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
           PG+VG++A R+KE+F RP    +  EDG   GS RS+   D+G  +  A + G+L  GGG
Sbjct: 359 PGVVGIVAGRIKERFNRPVLVGAELEDGTVKGSSRSVADLDLGAAIIAARQAGLLTTGGG 418

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAG ++ R     L DF +        AL       I+GV++ +     L   +   
Sbjct: 419 HAMAAGFSLPREGVPALHDFLEARLAGA-TALPDATDVLIEGVVHVAGATTELATDIGRL 477

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEF 556
            P+GAGN  P+ A P  ++     +      L++  E       L+A+ FR    P    
Sbjct: 478 APFGAGNDEPILAIPRVRVVRADRIGREGNTLRVLVEGEGGGPRLKALLFRADDHPATPI 537

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           L       +H+ G L    W G       + DA+   
Sbjct: 538 LEDRNAPPLHLAGWLRAESWNGRVSAGFFIRDAAIAT 574


>gi|312622993|ref|YP_004024606.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203460|gb|ADQ46787.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 798

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/577 (29%), Positives = 295/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW+        +  + I  +  I   + +VL NR +   +  + FLNPS++ L  +P +
Sbjct: 6   KRWILKDNSNIEDMDIEIDGR-KIKPQIVKVLNNRGIQEKEEIEKFLNPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A + I QAI    +++I+GDYD DG  S  L+   L +  +    YIP+R  DG
Sbjct: 64  LPDMKEAVKIINQAILCKSRVLIYGDYDCDGVTSTYLLYSVLKNF-LPTIYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K + +   L+ITVD G ++ + ++Y   +G  VI+ DHH+ K     A A+
Sbjct: 123 YGLNFDVLKK-LEDKFDLLITVDTGISAQNEVKYLKEKGKTVIITDHHEPKEVLPEADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D +     L   GV F +L  +           +N  L   LD+VA+ T+ DV+
Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KNSGINLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR     GL V +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRVLAKFGLKVLKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  D  + E +A KLD  N+ R+ +E   +++A++ +  +   I +  + V
Sbjct: 295 DANLAVSLLLEQDIIKAESIAKKLDEENRKRQEIEEKTIKEAQSLI-NKNKGILRKKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  ++G   GSGRSI+GF++ + +    E  
Sbjct: 354 LSNGSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAE-- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  ++D VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +   ++ Q  ++D 
Sbjct: 527 LEDEDELISMKKVDIVCKLEKNLFNSVRKNQFNIIDI 563


>gi|160900838|ref|YP_001566420.1| single-stranded-DNA-specific exonuclease RecJ [Delftia acidovorans
           SPH-1]
 gi|160366422|gb|ABX38035.1| single-stranded-DNA-specific exonuclease RecJ [Delftia acidovorans
           SPH-1]
          Length = 572

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/581 (29%), Positives = 266/581 (45%), Gaps = 29/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +  +    +A A+ Q   +  ++A++   R V        L+ +   L+P P  L   
Sbjct: 2   KIIPREIPAQQASALRQA-GVHPLLAQLYAARGVCSADE---LDDTPARLLP-PSGLLGM 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
           + A R +  AI    ++ I  DYD DGA + A+  R L        +  +PDR+VDGYG 
Sbjct: 57  EAAVRLLADAIERGLRLCIVADYDCDGATACAVGWRGLRMLGATEVSYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P +  +    GA++++TVD G  S + +  A   G+ V+V DHH   +    A A+VNP
Sbjct: 117 TPPIARRVKETGAEVMVTVDNGIASVEGVAEAKALGLQVVVTDHHLPGNHLPLADAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F VL+ +   LR   +        L +LL LVAL TV DVV 
Sbjct: 177 NQPGCSFESKSMAGVGVMFYVLLALRAELRARGRFDKASQPRLEALLPLVALGTVADVVR 236

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
           L   NR  V  GL   RR Q  PGL AL E     +   T  + G+ +GP INA GR+ +
Sbjct: 237 LDANNRRLVALGLKQIRRGQMQPGLLALFEAAGRKAFAATTFDFGFALGPRINAAGRLSD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372
             +G   L +DD+     LA  LD +N+ RR +E  M EQA       C+D +   + I 
Sbjct: 297 MTIGIECLTTDDAGRAANLAQMLDAINRERRELEGGMREQALLMAEGLCEDGMTPPAAIS 356

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           V    +H G+VG++A+R+K++  RPSF      +   + +  GSGRSI GF +   +   
Sbjct: 357 VFDPDFHEGVVGIVASRIKDRMHRPSFVFAASGAPGHEHELKGSGRSIPGFHLRDALDLV 416

Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                G+L++ GGHAMAAG T+    F        + A   + A   T   + DG L+  
Sbjct: 417 SKRHPGLLLRFGGHAMAAGCTIAEAGFAVFEKALAQVAQEWLDAATLTRRIETDGPLDPD 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
                +++ L     +G G   P F     ++ S R+V   HL++    Q  ET+  I F
Sbjct: 477 FRKPEMVEQLN-LAVWGQGFAPPTF-SEQLEVLSQRLVGEKHLKLQLRHQ-GETVDGIWF 533

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                               +   + +N WRG ++ Q  + 
Sbjct: 534 GHTD---------PLPPSACIAFRMDINEWRGERKVQFLIE 565


>gi|294013199|ref|YP_003546659.1| single-stranded DNA-specific exonuclease [Sphingobium japonicum
           UT26S]
 gi|292676529|dbj|BAI98047.1| single-stranded DNA-specific exonuclease [Sphingobium japonicum
           UT26S]
          Length = 588

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 234/593 (39%), Positives = 334/593 (56%), Gaps = 15/593 (2%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66
           L V  SI G  W    G             +   D+V ++L+ R    D  +   NP+IR
Sbjct: 5   LNVTRSILGQPWRWRGGSADGRDPG-----YRPDDLVTQLLLARGCPRDAVEAHRNPTIR 59

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
             MPDP +  D D AA R+  A+   E + IFGDYDVDGA S AL++R L    + A  Y
Sbjct: 60  HFMPDPSLFRDMDAAAERLADAVARGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPY 119

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDR+++GYGP+   + +   EGA LI+TVDCG+ ++DAL  A   G+DV+V+DHH+  +
Sbjct: 120 IPDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFDALAQAKAAGVDVVVVDHHKCAA 179

Query: 187 EEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSL 241
               A ALVNPNRLD+       GHL A GV FL+   + R LR+ N         L+ L
Sbjct: 180 ALPEALALVNPNRLDEAEEAAAHGHLAAVGVAFLLGAALIRALRKRNWFAQRTEPPLMDL 239

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LD+VAL TV DV  L GLNRA+V +GL V  ++ N GL ALI+   ++      +LG+ +
Sbjct: 240 LDIVALGTVADVAQLKGLNRAFVAQGLKVMAKRRNIGLSALIDASRLTRAPLCHDLGFAL 299

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGR+G+++LG RLL ++D  E   +A +LD+LN+ RR +E+A+  +AE  +  Q
Sbjct: 300 GPRINAGGRVGKADLGVRLLTTEDPAEAAQIAQELDLLNEERRAIEAAVQAEAEELLAAQ 359

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                  +V +V G  WHPG++G++A R+KEK GRP+  ++ + DG G GSGRSI G D+
Sbjct: 360 G----NRAVALVSGAGWHPGVIGIVAGRIKEKAGRPAIVVAIDGDGTGKGSGRSISGVDL 415

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  V  A + G+LV GGGHAMAAGLTV       L DF  +     V          ID 
Sbjct: 416 GAAVLAAKDSGLLVAGGGHAMAAGLTVAADKVDALADFLDERLSGAVAKARDDRALLIDA 475

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
           VL  + VN   +  +++ GPYGAG P P+ A    ++    VV   HL+      D  ++
Sbjct: 476 VLAPAGVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVIKADVVGNGHLRAIMAGDDGRSI 535

Query: 542 QAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           + IAFR   + LG+ ++   R +R+ + G   ++ W      +L + DA+  +
Sbjct: 536 KTIAFRQAESDLGQAILGAPRDRRLWIVGRAKIDDWGPRPAAELHLEDAAWAD 588


>gi|327183758|gb|AEA32205.1| single-stranded-DNA-specific exonuclease [Lactobacillus amylovorus
           GRL 1118]
          Length = 757

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/578 (28%), Positives = 272/578 (47%), Gaps = 32/578 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E       + +K+ +  I A++   R +  D   DF   +    + DP ++ 
Sbjct: 2   KWQQRTAEELDPS---LIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 59  DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN       + +G +LIITVD G T  D ++YA   G+D IV DHH  + ++  AYA+V+
Sbjct: 119 PNIDRYHDIVADGTKLIITVDNGVTGIDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++ + I P +NA GR+  +N
Sbjct: 228 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTLGSINETDIAFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++  A +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDVEAQKIADQIEELNNQRKELTTEVYDKCMALIRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRSI GF++   ++   EE +  
Sbjct: 346 PDFHEGVLGLVANKIVEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEE-LFT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++     G L +  +K  H      I       D  L    ++   +  
Sbjct: 405 KFGGHDFACGLSMTEDKIGALREKLEKGFHVEGGLEIKE----YDMELPLQGLSPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+  P+F+  N  +     +     H++     +   +L  I F       
Sbjct: 461 INQVGPFGTGDAQPIFSISNPTITQFFKIGKEKNHVKFNVAKKGG-SLAVIGFN------ 513

Query: 554 GEFLMQSRGKRM-HVTGHLCVNYWRGSKRCQLRVLDAS 590
            +FL  +    +  V   L +N +R     Q  +    
Sbjct: 514 KDFLNNNLLPFIARVFVQLSLNTYRNKISLQGIIEGIE 551


>gi|312134593|ref|YP_004001931.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor
           owensensis OL]
 gi|311774644|gb|ADQ04131.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           owensensis OL]
          Length = 798

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/577 (29%), Positives = 298/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW+        +  + I  +  I   + +VL NR V   +  + FLNPS++ L  +P +
Sbjct: 6   KRWILKDNSNLESIDIEIDGR-KIKPQIIKVLNNRGVQEREEIEKFLNPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A + I QAI +  +++I+GDYD DG  S  L+   L +  +    YIP+R  DG
Sbjct: 64  LNDMKEAVKIISQAILHRSRVLIYGDYDCDGVTSTYLLYSNLRNF-LPTTYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K + +   ++ITVD G +S++ ++Y   +G  VI+ DHH+ K     A A+
Sbjct: 123 YGLNLDVLKK-LEDKFDILITVDTGISSHNEIKYLKEKGKTVIITDHHEPKEVLPDADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D +     L   GV F +L  +           +N  L   LD+VA+ T+ DV+
Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR     GL + +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRVLAKFGLKILKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  D+ + E +A +LD  N+ R+ +E   +++A+  ++     ++   + V
Sbjct: 295 DANLAVSLLLEKDAIKAESIAKRLDEENRKRQEIEEKTIKEAQGLIVNNKSILK-KKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  ++G   GSGRSI+GF++ + +    E  
Sbjct: 354 LSNSSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAE-- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  ++D VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFTGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N++   ++ Q  ++D 
Sbjct: 527 LEDEDELVSMKKVDIVCKLEKNFFNSVRKNQFNIIDI 563


>gi|257064878|ref|YP_003144550.1| single-stranded-DNA-specific exonuclease RecJ [Slackia
           heliotrinireducens DSM 20476]
 gi|256792531|gb|ACV23201.1| single-stranded-DNA-specific exonuclease RecJ [Slackia
           heliotrinireducens DSM 20476]
          Length = 1102

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/573 (27%), Positives = 270/573 (47%), Gaps = 24/573 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
              +   AI Q+  +P  VA  +V   V +++ A+ FLNP +     +P  +    +AA 
Sbjct: 10  AEPSAVAAIQQEFGLPRFVAATMVAHGVKTLEEARHFLNPDLDEDWRNPYDIPQMKEAAD 69

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
           R+  AI N+E I++FGD+D+DG ++  ++ R L     +A+  IP R  +GYG + + + 
Sbjct: 70  RVEAAIRNNETILVFGDFDLDGISATTVLTRGLRSLGADAHWLIPRRFEEGYGLSDAAIA 129

Query: 144 KFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           +        LIITVDCG +  D  +   + G++++V DHH+          +V+P   +D
Sbjct: 130 RAQTECDPDLIITVDCGISCKDEAETVKSLGMELVVTDHHEPSENVPEGIIVVDPKCCED 189

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
                 L   GV   ++ ++     +       +      DL  L TV D++PL   NRA
Sbjct: 190 N-PSSILAGVGVALKLVQVLGARFGE------PYLWRQYTDLATLGTVADLMPLRDENRA 242

Query: 263 YVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
            V  GL        P + ALI   N+    +T+ NL + + P +NA GR+G++ L ++LL
Sbjct: 243 LVADGLRQINTNPRPCIAALIGVCNVADKELTSTNLSFSLIPRLNAAGRMGDAGLAAKLL 302

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           + DD  E + LA +LD +N  RR +E+ +   A+ +   +  D Q+A V  V G+ WH G
Sbjct: 303 MEDDFGEAQKLAAELDAVNDQRRSIEADLAAVAKEQA-EKIYDGQRALV--VAGEGWHEG 359

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           + G++A+RL   +G PS   +   D +  GSGRS+   ++ K V       +LV+ GGHA
Sbjct: 360 VKGIVASRLVNTYGVPSILFTITGD-EARGSGRSVGQVNLFKAVESL--SDMLVRFGGHA 416

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
            A G+TV         +    +  + +P     P+  ID  ++   + I  ++ LE   P
Sbjct: 417 AAVGVTVPTDRLPEFNERLCAYMDS-LPESSFHPLITIDTPVDLDELTIENVEQLERLAP 475

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           +G  NP P     N ++ + R V     HL  +        +  I F   G       + 
Sbjct: 476 FGQENPTPRLLARNVRIVNARAVGAAKNHLSCSLTD-GVSRVDGIMFHCEGIEG----LM 530

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + G  +     + ++ WRG ++ +  +    P 
Sbjct: 531 ACGGVVDAVFEVEIDEWRGRRKVKCMLKAVEPT 563


>gi|331269773|ref|YP_004396265.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum BKT015925]
 gi|329126323|gb|AEB76268.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum BKT015925]
          Length = 558

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/571 (29%), Positives = 275/571 (48%), Gaps = 37/571 (6%)

Query: 47  LVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           + NRN+ + + AK FL  S+  L   P ++ D       I+ AI   +KI+++GDYD DG
Sbjct: 1   MANRNIQNEEEAKKFLRASLEDLY-SPFLMQDMQNGIDIILDAIDEGKKIVVYGDYDADG 59

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S A++ + L     N   YIPDR  +GYG   + ++    +G  +I+T D G ++ + 
Sbjct: 60  VTSTAILYKGLLELDANVEYYIPDRETEGYGMCSNRIKILKEQGTDIILTCDNGISAVEE 119

Query: 166 LQYATNQGIDVIVIDHHQVK---------SEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           ++ A   G+ V++ DHH++               A A++NP R D       LC AG+ F
Sbjct: 120 VKLAKELGMQVVITDHHELPFKEEQGEREYIIPNADAIINPKRNDCEYPFKMLCGAGIAF 179

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
             +  +Y  +  D+K          ++L  + T+CDVV L+G NR      L +     N
Sbjct: 180 KFIQALYINVGIDDKKA-----YKFIELAGIGTICDVVDLVGENRIIAKNSLKMISNTTN 234

Query: 277 PGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GLK LI+ +   +  + + N+G+MIGP INA GR+  + L   LLI+DD +  + LA  
Sbjct: 235 LGLKCLIDVLGINNKEVKSYNIGFMIGPCINATGRLDTAALSVELLITDDEERAKELASI 294

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395
           L+ LN+ R+ M    +E+    V  +    ++  V+V+  +  H  I G++A +++EKF 
Sbjct: 295 LNDLNKTRQEMTMRNVEEIIDVV--ENSSFKEDKVLVIYKEDIHESIAGIVAGKVREKFN 352

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455
            P+  ++ +      GSGRSIE +++         + +L K GGH MAAGL+++  N   
Sbjct: 353 VPTIILT-KGKEMPKGSGRSIEEYNL--FEELLKCKELLDKFGGHPMAAGLSIKEENISE 409

Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
           L           +      P  KID  +    VN  LI  +E   P+G GN +P+FA  N
Sbjct: 410 LRQRLNANCK--LTDNDIVPKIKIDKRIPLDIVNDELISEMEILEPFGKGNSSPLFAEKN 467

Query: 516 HKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTP-----------LGEFLMQSRG 562
             +  IRV+      L++T    D E ++AI+F                   + L+    
Sbjct: 468 VSVSQIRVIGKNQNTLKLTCIINDKEKIEAISFNKVNEFKEMLEVKFKNTFEKILLNLSN 527

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            ++ +  +  +N + G++  QLR+ D    E
Sbjct: 528 LKLDLIFYPIINEFNGNRTVQLRIKDFRLSE 558


>gi|299531547|ref|ZP_07044953.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas
           testosteroni S44]
 gi|298720510|gb|EFI61461.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas
           testosteroni S44]
          Length = 579

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/588 (29%), Positives = 269/588 (45%), Gaps = 29/588 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +          A+ Q   I  ++A++   R V        L+ +   L+P P  L   
Sbjct: 2   KIIPRSIPDGSVSALLQA-KIHPLLAQLYAARGVCSADE---LDDAPARLLP-PSGLRGI 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
           D A + +  AI   +++ I  DYD DGA + A+ +R L      +A+  +PDR+VDGYG 
Sbjct: 57  DTAVQLLADAITAQKRLCIVADYDCDGATACAVGLRGLRMLGAAHADYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
              +  +    GA ++ITVD G  S + +  A   G+ V+V DHH        A A+VNP
Sbjct: 117 TAPISRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPLADAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F VL+ +   LR   +   +    L  LL LVAL TV DVV 
Sbjct: 177 NQPGCEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVK 236

Query: 256 LIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313
           L   NR  V  GL   R+    PG++AL E       +    + G+ +GP INA GR+ +
Sbjct: 237 LDANNRRLVALGLKQIRKGVMQPGIRALFEASGRRFDMATTIDFGFALGPRINAAGRLAD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372
             +G   L ++D    + LA  LD +N+ RR +E +M E A       C+D +     I 
Sbjct: 297 MTIGIECLTTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAIS 356

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA 428
           V    +H G+VG++A+R+K+K  RP+F  +       + +  GSGRSI GF +   +   
Sbjct: 357 VFDPDFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV 416

Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                G++++ GGHAMAAG T+   +F      F + A   + A   T   + DG L+  
Sbjct: 417 SKRHPGLILRFGGHAMAAGCTIAEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQ 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
            ++  LI+ +     +G G   P F     ++ S R+V   HL++      S+ +  I F
Sbjct: 477 WLDTGLIEQM-QLAVWGQGFAAPTF-SEELEITSQRLVGEKHLKLELLHHGSK-IDGIWF 533

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                            R  +   L +N WRG ++ Q  V  A   EG
Sbjct: 534 NHTD---------PLPSRTTLAYRLDINEWRGERKVQFLVEAAQDFEG 572


>gi|260557919|ref|ZP_05830132.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii ATCC 19606]
 gi|260408710|gb|EEX02015.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii ATCC 19606]
          Length = 566

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/559 (30%), Positives = 263/559 (47%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   D A   + QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + I A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN +RR +E  M +QA + + +     Q   + +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF    + F      +    +       DG L  SA+ +  ++ +E  GP+G   P P 
Sbjct: 433 ENFEAFKNLFNDCVAAM-DESVFQATLWTDGELPLSALQLDTLNWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564


>gi|264676975|ref|YP_003276881.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas
           testosteroni CNB-2]
 gi|262207487|gb|ACY31585.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas
           testosteroni CNB-2]
          Length = 579

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/588 (29%), Positives = 269/588 (45%), Gaps = 29/588 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +          A+ Q   I  ++A++   R V        L+ +   L+P P  L   
Sbjct: 2   KIIPRSIPDGSVSALLQA-KIHPLLAQLYAARGVCSADE---LDDAPARLLP-PSGLRGI 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
           D A + +  AI   +++ I  DYD DGA + A+ +R L      +A+  +PDR+VDGYG 
Sbjct: 57  DTAVQLLADAITAQKRLCIVADYDCDGATACAVGLRGLRMLGAAHADYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
              +  +    GA ++ITVD G  S + +  A   G+ V+V DHH        A A+VNP
Sbjct: 117 TAPISRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPLADAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F VL+ +   LR   +   +    L  LL LVAL TV DVV 
Sbjct: 177 NQPGCEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVK 236

Query: 256 LIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313
           L   NR  V  GL   R+    PG++AL E       +    + G+ +GP INA GR+ +
Sbjct: 237 LDANNRRLVALGLKQIRKGVMQPGIRALFEASGRRFDMATTIDFGFALGPRINAAGRLAD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372
             +G   L ++D    + LA  LD +N+ RR +E +M E A       C+D +     I 
Sbjct: 297 MTIGIECLSTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAIS 356

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA 428
           V    +H G+VG++A+R+K+K  RP+F  +       + +  GSGRSI GF +   +   
Sbjct: 357 VFDPDFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV 416

Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                G++++ GGHAMAAG T+   +F      F + A   + A   T   + DG L+  
Sbjct: 417 SKRHPGLILRFGGHAMAAGCTIAEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQ 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
            ++  LI+ +     +G G   P F     ++ S R+V   HL++      S+ +  I F
Sbjct: 477 WLDTGLIEQM-QLAVWGQGFAAPTF-SEELEITSQRLVGEKHLKLELLHHGSK-IDGIWF 533

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                            R  +   L +N WRG ++ Q  V  A   EG
Sbjct: 534 NHTD---------PLPARTTLAYRLDINEWRGERKVQFLVEAAQDFEG 572


>gi|315640891|ref|ZP_07895987.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           italicus DSM 15952]
 gi|315483309|gb|EFU73809.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           italicus DSM 15952]
          Length = 761

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/577 (29%), Positives = 280/577 (48%), Gaps = 32/577 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
           ++W+    +   +   ++  +  +P+  A +L  R +  + A ++FL+PS+  L  DP +
Sbjct: 6   YQWLISENELSDSFVTSVIGR-QLPETFATLLWQRGIRDEEALENFLHPSLEKLH-DPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D D+A  R+ QAI  ++KI+I+GDYD DG  S  ++   L     +   Y+P+R  DG
Sbjct: 64  FYDMDRAIERVQQAIIENQKILIYGDYDADGITSTTILKEALDFLGADVEFYLPNRFADG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN  +  + INEG QLIITVD G + ++A+ YA + G+DVIV DHH++  +   AYA+
Sbjct: 124 YGPNQRVYSEKINEGVQLIITVDNGVSGHEAIDYANSVGVDVIVTDHHELPEQLPNAYAI 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P           L   GV F  +  +   L           ++  LDLVA+ T+ D+V
Sbjct: 184 IHPRHPKGHYPFKELAGVGVAFKFVCALLDEL-----------VVESLDLVAIGTIADMV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
            L   NR  V  GL   R+    GL+ LI     +   +  +++G+ + P +NA GR+ +
Sbjct: 233 SLTDENRILVAFGLQAIRQTERMGLQELIRVSQVVPEELDDKSVGFSLAPRLNALGRLSD 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + +   LL + D Q+ + LA ++D  N  R+ + + +  +A  K+           + V+
Sbjct: 293 ATIAVELLTTFDEQKAKTLAQEIDQKNTERKQIVADVFAEASQKINVDNQ------IHVI 346

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G++G++A R+ ++ G+P+  ++   +G   GSGRSIE FD+    +    + +
Sbjct: 347 VGENWHEGVLGIVAGRIMQQTGKPTIVLTKLVNGVAKGSGRSIESFDL--FQTLLPLKEL 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
            +  GGH  A GL++E+     L      +           P  +IDG L      +  I
Sbjct: 405 FLSFGGHHSAVGLSIEQNQIDTLQQSLNDYVLTRGIHFTGLP-LRIDGTLKIEEATVPFI 463

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             L++  P+G  N  P F F   K    R++     HL+       S +L  IAF     
Sbjct: 464 KSLQTLAPFGMDNRYPKFLFSEIKATDNRLIGAEKNHLKGQLSD-GSASLPYIAF----- 517

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
             G +L       + + G L +N W      QL V D
Sbjct: 518 QFGSYLTDFSSDNLSIVGELTLNSWNNHVTPQLMVDD 554


>gi|299768409|ref|YP_003730435.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter sp.
           DR1]
 gi|298698497|gb|ADI89062.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter sp.
           DR1]
          Length = 566

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 176/559 (31%), Positives = 263/559 (47%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   + A   I QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVESEQELE----LKLKNLLAP-QLKGLETAVALIDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDTAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCDFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRSRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      S + A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREASSLRAQDLGFVLGPRINAAGRMESMRIGIECLLADSMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E  M +QA + + + Q         +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDIPPALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I  M+    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPAIVFAPDEDGVHIKGSARSIDGVHIRDMIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    +       DG L ASA+ +  +D +E  GP+G   P P 
Sbjct: 433 ENFDAFKTVFTGCVAAM-EESLFQATLWTDGELPASALQLDTLDWIEQLGPWGQKFPFPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  T  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVVDYRWLKETHLKLRLAL-DQYTFDAIAFNAA----GRFEFNPMRDEVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N ++G+   QLR++  
Sbjct: 546 IDRNVFKGNVNLQLRIVHL 564


>gi|288940593|ref|YP_003442833.1| single-stranded-DNA-specific exonuclease RecJ [Allochromatium
           vinosum DSM 180]
 gi|288895965|gb|ADC61801.1| single-stranded-DNA-specific exonuclease RecJ [Allochromatium
           vinosum DSM 180]
          Length = 577

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/566 (32%), Positives = 277/566 (48%), Gaps = 23/566 (4%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
            ++++ +  +R +S         P +  L P    L   + A  R+V AI + + I++ G
Sbjct: 22  DELLSVLYAHRGLSDPAEAA---PGLGTLAPV-TALYGMEAAVNRLVAAIRSEQSILVVG 77

Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           DYD DGA   AL +R L        +  +P R  +GYG +P+++E    +GA +I+TVD 
Sbjct: 78  DYDADGATGSALAVRGLRDLGARRVSFLVPSRFSNGYGLSPAVVEAACGQGADVILTVDN 137

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S+ A+  A   G+ V+V DHH        A A+VNPN+        HL   GVVF +
Sbjct: 138 GISSHAAMARARELGLSVVVTDHHLPGDALPEADAIVNPNQPGCGFPSKHLAGVGVVFYL 197

Query: 219 LVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
           L  +   LR+           +L   LDLVAL TV DVV L   NR  V +GL   R  +
Sbjct: 198 LAALRGRLRESGWFGADRPEPNLAERLDLVALGTVADVVSLDRNNRILVEQGLRRVRAGR 257

Query: 275 GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
              G+ AL++         TA + G+ + P +NA GR+ E +LG   L++DD      +A
Sbjct: 258 ACAGVLALLQVAGRDPARATAADFGFFVAPRLNAAGRLTEMSLGVECLLTDDPDRALAMA 317

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKE 392
            +LD LN+ RR +E AM E AEA +     D       + + G+ WH G+ G++AARL+E
Sbjct: 318 QQLDALNRERRAIEGAMKEAAEAVLDALILDGDSLPPGLCLFGEDWHQGVSGIVAARLRE 377

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           ++ RP+ A +   DG+  GSGRSIEG  +   + +        +   GGHAMAAGLT+  
Sbjct: 378 RYHRPTIAFADAGDGRLRGSGRSIEGLHLRDAIDWVDRRHPELIEYFGGHAMAAGLTLRP 437

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
                  D F +     +  +  TP  + DG L A  + +   + L  AGP+G   P P 
Sbjct: 438 GCLEPFRDAFVEAVRVQLGDIPPTPEIRSDGALPAELLTLETAEALRFAGPWGKDFPEPR 497

Query: 511 FAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F     ++   R+V     HL++         ++AI F      LGE +  +RG  + + 
Sbjct: 498 FD-DVFEVVEARLVGDDRRHLKLRVAPPGGAVIEAIGFG-----LGERIEAARGA-VRLV 550

Query: 569 GHLCVNYWRGSKRCQLRVLDAS-PVE 593
             L VN +RG +  QL V   + PVE
Sbjct: 551 YRLDVNSYRGRQSLQLLVDHLADPVE 576


>gi|302871303|ref|YP_003839939.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574162|gb|ADL41953.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 798

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/577 (30%), Positives = 299/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            RW+        N  + I  K  I   + +VL NR V   +  + FLNPS++ L  +P +
Sbjct: 6   KRWILKDSSNLENIDIEIDGK-KIKPQIIKVLNNRGVQEREEIERFLNPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A + I QAI +  +++I+GDYD DG  S  L+   L +  +    YIP+R  DG
Sbjct: 64  LNDMKEAVKIISQAILHKSRVLIYGDYDCDGVTSTYLLYSNLRNF-LPTTYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K + +   ++ITVD G+++++ ++Y   +G  VI+ DHH+ K     A A+
Sbjct: 123 YGLNLDVLKK-LEDKFDVLITVDTGTSNHNEVKYLKEKGKTVIITDHHEPKEVLPDADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R D +     L   GV F +L  +           +N  L   LD+VA+ T+ DV+
Sbjct: 182 VNPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR     GL + +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRVLAKFGLKILKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  D+ + E +A KLD  N+ R+ +E   +++A+  ++     ++   + V
Sbjct: 295 DANLAVSLLLEKDAIKAESIAKKLDEENRKRQEIEEKTIKEAQGLIVKDKSILK-KKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  ++G   GSGRSI+GF++ + +    E  
Sbjct: 354 LSNSSWHAGVVGIASSKITEKYYRPSLLLTLADEGILKGSGRSIKGFNLFEALKNCAE-- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  ++D VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLIVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +  +++ Q  ++D 
Sbjct: 527 LEDEDELVSMKKVDIVCKLEKNIFNSARKNQFNIIDI 563


>gi|227892585|ref|ZP_04010390.1| recombination protein J [Lactobacillus ultunensis DSM 16047]
 gi|227865570|gb|EEJ72991.1| recombination protein J [Lactobacillus ultunensis DSM 16047]
          Length = 772

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/578 (27%), Positives = 275/578 (47%), Gaps = 32/578 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E    +  + +K+ +  I A++   R ++ D   DF   +    + DP ++ 
Sbjct: 17  KWQQNKAEE---LSSDLVEKYQLSPIAAQLFALRGINTDEKLDFWFNATEENLADPSLMH 73

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 74  DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 133

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  D ++YA + G+D IV DHH  +  +  A A+V+
Sbjct: 134 PNIDRYKDIVADGTKLIITVDNGVTGIDEVKYAKDHGVDTIVTDHHTFQENKPDACAIVH 193

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 194 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 242

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 243 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTMGTINETDVGFNIAPRLNAVGRLANAN 302

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++    +       Q+ + +V+  
Sbjct: 303 LAVELLLSDDDVEAQKIADQIEDLNNQRKELTTKVYDRCMQLIRENSW--QKQNTLVLYN 360

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRSI+GF++   ++   ++ +  
Sbjct: 361 PDFHEGVLGLVANKIVEKTHKPTIVLTKNKKGEIKGSGRSIDGFNLFDALNPL-KDDLFT 419

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++       L +  ++  H              D  L    ++   +  
Sbjct: 420 KFGGHDFACGLSMTEDKIAPLREKLEQGFHVEGGLESRK----YDMELPMKDLSPQTLAK 475

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+  PVF+  N  +     +     H++ T  +++  +L  I F       
Sbjct: 476 INQVGPFGTGDAQPVFSISNPTITQFYKIGKDKNHVKFT-AAKNGGSLSVIGFN------ 528

Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590
            +FL  +    +      L +N +R     Q  +    
Sbjct: 529 KDFLNNNLLPFISKVFVQLSLNTFRKQVSLQGIIEGIE 566


>gi|169794365|ref|YP_001712158.1| ssDNA exonuclease, 5'--> 3' specific, Mg dependent [Acinetobacter
           baumannii AYE]
 gi|213159057|ref|YP_002321055.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB0057]
 gi|215481922|ref|YP_002324104.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB307-0294]
 gi|301344656|ref|ZP_07225397.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB056]
 gi|301512802|ref|ZP_07238039.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB058]
 gi|301597475|ref|ZP_07242483.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB059]
 gi|332850173|ref|ZP_08432560.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii 6013150]
 gi|332868950|ref|ZP_08438509.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii 6013113]
 gi|169147292|emb|CAM85153.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter
           baumannii AYE]
 gi|213058217|gb|ACJ43119.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB0057]
 gi|213989013|gb|ACJ59312.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii AB307-0294]
 gi|332731022|gb|EGJ62328.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii 6013150]
 gi|332732993|gb|EGJ64195.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii 6013113]
          Length = 566

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/559 (31%), Positives = 262/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   D A   + QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + I A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN +RR +E  M +QA + + +     Q   + +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    I       DG L  SA+ +  ++ +E  GP+G   P P 
Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564


>gi|167040105|ref|YP_001663090.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           sp. X514]
 gi|166854345|gb|ABY92754.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           sp. X514]
          Length = 811

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/576 (31%), Positives = 296/576 (51%), Gaps = 23/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  + + + +P I+A +L  R +++   K FLNP ++ L   P +L
Sbjct: 5   YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 61

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I + + I I+GDYDVDG  + +++   L       + YIP+R+V+GY
Sbjct: 62  RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 121

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 122 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 181

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+  D       L   GV F +   +              +   LLD+V++ T+ D+VP
Sbjct: 182 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 230

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKALI+     +S I   ++G+++ P +NA GR+  +
Sbjct: 231 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLQNSEIDEYHVGFILAPRLNAAGRLRSA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS D +E+E +A  L+  N NR+ +E+ +L++A  K+  +  D+ +  VIV+ 
Sbjct: 291 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 349

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ K + +   +  L
Sbjct: 350 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  +    ++I +  
Sbjct: 407 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 466

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  +  +N    +     +D    + + F        
Sbjct: 467 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 526

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G  + V G + +N W G +   + V D  
Sbjct: 527 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 558


>gi|292491002|ref|YP_003526441.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus
           halophilus Nc4]
 gi|291579597|gb|ADE14054.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus
           halophilus Nc4]
          Length = 578

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/567 (32%), Positives = 276/567 (48%), Gaps = 25/567 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ RV   R +    A   L+ ++  L P P +L++   A   + +A+    +I++ 
Sbjct: 20  IHPVLRRVYRARGI---KAPGELDYALEQL-PSPWLLSNIKTAVALLAEALEQGWRILVV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITV 156
            D+D DGA S AL +R L        +  +P+R + GYG  P+++ E        LIITV
Sbjct: 76  ADFDADGATSCALAVRALRLMGAGEVDYLVPNRFIHGYGLTPAIVAEAMARGRPDLIITV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +Q A    I V+V DHH   S    A A+VNPN  DD    G L   GV+F
Sbjct: 136 DNGISSIDGVQTAQEANIRVLVTDHHLPGSVLPAADAIVNPNLPDDPFPSGCLAGVGVIF 195

Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVA 271
            V++ +   LR+             L  LLDLV L TV DVVPL  +NR  V +GL  + 
Sbjct: 196 YVMLALRAYLREQGWFARSGQGEPTLAPLLDLVTLGTVADVVPLDQVNRTLVAQGLARIR 255

Query: 272 RRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           R +   G++AL      S    T  +LG+ +GP +NA GR+ + +LG   L++D  +  +
Sbjct: 256 RHRCCVGIQALAACARRSLENFTTSDLGFGVGPRLNAAGRLEDMSLGIACLLTDSPEVAQ 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV--IVVEGDRWHPGIVGLLAA 388
             A +LD LN+ RR +ES M  QA   +       ++       +  + WH G++GLLA+
Sbjct: 316 QQASELDALNRERREIESTMQNQAAIHLENLVFPGEEKGPLGYCLFDESWHQGVIGLLAS 375

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R++E+  RP  A +  ++ +  GS RSI G  I   +        G+L K GGHAMAAGL
Sbjct: 376 RIREQVYRPVIAFAPHDNEELKGSARSIPGLHIRDALDRVATSYPGLLSKFGGHAMAAGL 435

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++ RV+       F +     +       V   DG L     ++ L + L   GP+G G 
Sbjct: 436 SLPRVHLEPFRAAFLEVLEAQLDEETLEDVILSDGEL--DRWDLELAETLRDGGPWGQGF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P P+F      ++  R+V  AHL++T  +  + + L+ IAFR       E      G ++
Sbjct: 494 PEPLFDG-VFWVEGFRLVGEAHLKLTLTTLGNRQQLEGIAFRCLPPDWLEV-----GMKI 547

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +   L VN +R  +  QL V    PV
Sbjct: 548 RLAYRLDVNIYRDLRTVQLVVEYLEPV 574


>gi|300914189|ref|ZP_07131505.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           sp. X561]
 gi|307724576|ref|YP_003904327.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           sp. X513]
 gi|300889124|gb|EFK84270.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           sp. X561]
 gi|307581637|gb|ADN55036.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           sp. X513]
          Length = 815

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/576 (31%), Positives = 296/576 (51%), Gaps = 23/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  + + + +P I+A +L  R +++   K FLNP ++ L   P +L
Sbjct: 9   YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I + + I I+GDYDVDG  + +++   L       + YIP+R+V+GY
Sbjct: 66  RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+  D       L   GV F +   +              +   LLD+V++ T+ D+VP
Sbjct: 186 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKALI+     +S I   ++G+++ P +NA GR+  +
Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLQNSEIDEYHVGFILAPRLNAAGRLRSA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS D +E+E +A  L+  N NR+ +E+ +L++A  K+  +  D+ +  VIV+ 
Sbjct: 295 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ K + +   +  L
Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  +    ++I +  
Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  +  +N    +     +D    + + F        
Sbjct: 471 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G  + V G + +N W G +   + V D  
Sbjct: 531 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 562


>gi|307295021|ref|ZP_07574863.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobium
           chlorophenolicum L-1]
 gi|306879495|gb|EFN10713.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobium
           chlorophenolicum L-1]
          Length = 588

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 233/593 (39%), Positives = 336/593 (56%), Gaps = 15/593 (2%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66
           L +  SI G  W    G             +   D+V ++L+ R    D  +   NP+IR
Sbjct: 5   LNITRSILGQPWRWRGGSADGRDPG-----YRPDDLVTQLLLARGCPRDAVEAHRNPTIR 59

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
             MPDP +  D D AA R+ +A+   E + IFGDYDVDGA S AL++R L    + A  Y
Sbjct: 60  HFMPDPSLFRDMDAAAERLAEAVMRGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPY 119

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDR+++GYGP+   + +   EGA LI+TVDCG+ ++DAL  A   G+DV+V+DHH+  +
Sbjct: 120 IPDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFDALAMAKAAGVDVVVVDHHKCTT 179

Query: 187 EEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSL 241
               A ALVNPNRLD+       GHL A GV FL+   + R+LR+ N         L+ L
Sbjct: 180 LLPEALALVNPNRLDEAEEAAAHGHLAAVGVAFLLGAALIRVLRKRNWFAARSEPPLMEL 239

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LD+VAL TV DV  L GLNRA+V +GL +  ++ N GL ALI+   ++      +LG+ +
Sbjct: 240 LDIVALGTVADVAQLKGLNRAFVAQGLKIMAKRRNIGLSALIDASRLTRAPLCHDLGFAL 299

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGR+G+++LG RLL ++D  E   +A +LD+LN+ RR +E+A+  +AE  +  Q
Sbjct: 300 GPRINAGGRVGKADLGVRLLTTEDPAEAAKIAAELDLLNEERRAIEAAVQAEAEELLAAQ 359

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
                  +V +V G  WHPG++G++A R+KEK GRP+  ++ +EDG G GSGRSI G D+
Sbjct: 360 G----NRAVALVSGAGWHPGVIGIVAGRIKEKAGRPAIVVAIDEDGTGKGSGRSISGVDL 415

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
           G  V  A + G+LV GGGHAMAAGLTV       L DF        V          ID 
Sbjct: 416 GAAVLAAKDSGLLVAGGGHAMAAGLTVAAGKVDALADFLDARLSGAVAKARDDRALLIDA 475

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
           VL  + VN   +  +++ GPYGAG P P+ A    ++    VV   HL+      D  ++
Sbjct: 476 VLAPAGVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVIKADVVGNGHLRAIMAGDDGRSI 535

Query: 542 QAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           + IAFR   + LG+ ++   R +R+ + G   ++ W      +L + DA+  +
Sbjct: 536 KTIAFRQAESDLGQAILGAPRDRRLWIAGRAKIDDWGPRPAAELHLEDAAWAD 588


>gi|118444341|ref|YP_878389.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium novyi
           NT]
 gi|118134797|gb|ABK61841.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium novyi
           NT]
          Length = 588

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/599 (27%), Positives = 292/599 (48%), Gaps = 40/599 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W   + +        + ++  I DI A++L NR + S + AK F+  S+  L   P ++
Sbjct: 3   QWRLKVTKCDTKL---LAKQCNISDITAKILANRKIQSEEEAKKFIKASLDDLY-SPFLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +    ++ AI   +KI+++GDYD DG  S +++ + L     N   YIPDR  +GY
Sbjct: 59  KDMQQGVDIVLDAIDEGKKIVVYGDYDADGVTSTSILYKGLLEIDANVEYYIPDREAEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G + + ++   ++GA++I+T D G ++ + +++A   G+ V+V DHH++           
Sbjct: 119 GMSSNRLKILKDQGAEVILTCDNGISAVEEVKFAKELGMQVVVTDHHELPFKEEEGERKY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A++NP R D       LC AG+ F  +  +Y  L  D+           +++  
Sbjct: 179 IIPEADAVINPKRNDCTYPFKMLCGAGIAFKFIQALYVSLGLDDSDA-----YKFIEIAG 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           + T+CDVV L+  NR      L + +   N GL+ L+  +      I + N+G+MIGP I
Sbjct: 234 IGTICDVVDLVSENRIIAKNALKMMKSTSNLGLQCLMNALGINKEEIKSYNIGFMIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + L   LLI+ D +  + LA  L  LN+ R+ M +  +E+    V  +    
Sbjct: 294 NATGRLDTAALSVELLITKDEERAKELANILYDLNKTRQEMTTRNVEEIIDVV--ENSSY 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +Q  V+V+  +  H  I G++A +++E+F  P+  ++ +      GSGRSIE +++    
Sbjct: 352 RQDKVLVIYKEDIHESIAGIVAGKIRERFNVPTIILT-KGKEMPKGSGRSIEEYNL--FE 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  ++ K GGH MAAGL+++  N  +L     +     +      P  KID  +  
Sbjct: 409 ELLKCREVIEKFGGHPMAAGLSIKEENIEKLRTMLNENC--TLTDEDIIPKIKIDKRIPL 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
           S+V   LI+ LE+  P+G GNP P+FA  N K+ +IR++      +++T  + D+E + A
Sbjct: 467 SSVKEELIEELENLEPFGKGNPAPLFAEKNIKVLNIRIMGKDQNTIKLTCLTNDNEKIDA 526

Query: 544 IAFRVYG-----------TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           I F                 +   +      ++ +  +  +N + G +  QLRV D   
Sbjct: 527 IIFNRADEFKDMVEKSLREKIETVIASPYNLKLDLIFYPMINEFNGYRNKQLRVKDFRV 585


>gi|225164350|ref|ZP_03726615.1| single-stranded-DNA-specific exonuclease RecJ [Opitutaceae
           bacterium TAV2]
 gi|224801030|gb|EEG19361.1| single-stranded-DNA-specific exonuclease RecJ [Opitutaceae
           bacterium TAV2]
          Length = 607

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/585 (29%), Positives = 288/585 (49%), Gaps = 22/585 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW+         +  A+T+   +P ++A +LV   V +   A+ FLNP++  +  DP  L
Sbjct: 37  RWLYEPAPA--AQIAALTEATHVPPVIAELLVRAGVGTPAAAERFLNPALASI-SDPFQL 93

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            +   A  R+ QAI   E I + GDYDVDG  S AL++  L     +    +P R+ DGY
Sbjct: 94  QNLQAAVVRLHQAILQREDITVLGDYDVDGVTSTALLVSILRRFGTSPRFVVPRRMEDGY 153

Query: 136 GPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G + S +++ +     +L I +DCG+ S+D + Y    GIDVIVIDHHQ K+  +    L
Sbjct: 154 GLSRSAIDRALEPGHPRLFIALDCGTNSHDEIAYLRGLGIDVIVIDHHQTKTGLLNDAIL 213

Query: 195 VNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVC 251
           +NP+     +     HLC  G+VF +   + + LR +N    +   +   LDL A+ TV 
Sbjct: 214 INPHVYPTENDDDWRHLCTVGLVFKLAHGLVKHLRSENHPGAHEVKMRDYLDLAAMGTVA 273

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGG 309
           D+VPL G NR     GL + +     G++ L+E   +     +   ++ + +GP INA G
Sbjct: 274 DLVPLTGENRVIARNGLRILKTTTRSGVRTLMEVAGVRPGQELMPVDISFRLGPRINASG 333

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ +++L   LL+S+D +  +  A +LD  N+ R+ +E  + E+AE  + +Q  D   + 
Sbjct: 334 RLADASLSVELLLSNDEKFCKETATQLDAFNRERQDIERQITEEAERMIESQHLD---SP 390

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            IV+ G+ WHPG+VG++A R+  K+ RP   +  E DG   GSGRSI+G ++ ++++   
Sbjct: 391 GIVLFGENWHPGVVGIVAGRVCRKYNRPCVVLGTETDGSAKGSGRSIDGVNLVEVLAAC- 449

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
               L   GGH MA G+ +E+ +       F +         +T P   I   L    ++
Sbjct: 450 -AAHLTSWGGHPMAVGVALEKEHLAAFRVQFAQSVLRQAGGALTAPTLNISAWLRPEEIH 508

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRV 548
              +  LE   P+G  NP P+F   N   +    V    H +  FE      L  +A++ 
Sbjct: 509 ETFMGELERMYPFGQANPEPIFGVRNVVFRYRPEVFREQHFRFQFEDSHGRRLFGVAWKQ 568

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                    +   G+ +++   L  N++   K  QL ++D    E
Sbjct: 569 AHN------VPPAGEPINLAVRLAWNFFNDRKLLQLELVDWHRSE 607


>gi|113477606|ref|YP_723667.1| exonuclease RecJ [Trichodesmium erythraeum IMS101]
 gi|110168654|gb|ABG53194.1| exonuclease RecJ [Trichodesmium erythraeum IMS101]
          Length = 701

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/613 (26%), Positives = 283/613 (46%), Gaps = 53/613 (8%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW+    +  I     + +   I  ++A+ L+NR++ +I+ A+ FL+P    L   
Sbjct: 14  LPNQRWLIHPEKPEI--TNNLAKTLEISPLIAQSLINRDISTIEEAQVFLDPGSIKLPSP 71

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
                D + A   +   I   +KI I GDYD DG  S AL++R   H     +  IP R+
Sbjct: 72  IQEFPDLEIALNLLQTTISQKKKIAICGDYDADGMTSTALLLRSFKHLGAKVDYAIPSRM 131

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++E+F  EG  LI+TVD G ++Y  +  A   G++VI+ DHH +  E  PA
Sbjct: 132 QEGYGINERIIEEFHQEGVSLILTVDNGISAYKPIARARELGLNVIITDHHDIPPELPPA 191

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP  + + S    +   GV +++ + + + L + + +        LL+L  L T+ 
Sbjct: 192 NAILNPKLISETSPYQGVAGVGVAYILALSLAKRLDKLSGLT-----DPLLELFTLGTIA 246

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER-------------VNISSPITAENLG 298
           D+ PL G+NR +V +GL +       G++ALI+                    +  +++G
Sbjct: 247 DLAPLTGVNRRWVKQGLQLLPHSQLAGVRALIQVSDVKAQAQGNLKETKNQKSLKPDDIG 306

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + +GP INA GRI +  +   LL +DD +     A +   +NQ R+ + + + +QA    
Sbjct: 307 FRLGPRINAVGRIADPQIVIELLTTDDKEVAATRAKQCQEINQTRQELCAEIEQQAITWC 366

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----------- 407
                + ++  V+VV    WH G++G++A+RL E++G P F  S+EE+            
Sbjct: 367 EESQINFEKERVLVVVQPGWHHGVIGIVASRLVERYGVPVFIGSYEEEQGPDANLASSPG 426

Query: 408 ----------KGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
                        GS R I  F + + + F   + +L K GGH  A G ++   N     
Sbjct: 427 VMFASSETTYTIRGSARGIPEFHVFEGLQFC--DDLLGKYGGHKAAGGFSLPGKNLDEFR 484

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
               +FAH  +      P+  ID       +N  L   ++   P G  N +P+F   N +
Sbjct: 485 SRLSEFAHQCLKIHHLKPLITIDAEAEFKELNFDLYHQIDLLHPCGIENRSPIFWTSNVR 544

Query: 518 LQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577
           +   ++V   H+++T     SE ++AIA+R      G++        + +   L  N + 
Sbjct: 545 VAEQKIVGAGHIKLTLIK--SEIIKAIAWR-----WGDYFR--LPSLVDIAYKLRENTFN 595

Query: 578 GSKRCQLRVLDAS 590
           G    +L ++   
Sbjct: 596 GQTSIELELVGVR 608


>gi|172058100|ref|YP_001814560.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium
           sibiricum 255-15]
 gi|171990621|gb|ACB61543.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium
           sibiricum 255-15]
          Length = 769

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 181/592 (30%), Positives = 274/592 (46%), Gaps = 31/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S   W+         +   +  +  +   VA +LV R     D AK FL         DP
Sbjct: 4   SKKTWIDK--DVDSLKIDELADQVNVSRQVAHLLVQRGFDTADQAKAFLETDQTAFH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  D  K   RI QA    E I+I+GDYDVDG +S A++   L      A  YIP+R  
Sbjct: 61  FLFQDMTKVITRIQQAADEGEMILIYGDYDVDGVSSAAILWHALIEVGAMAECYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +       EG  L+ITVDCG +  +        G+D+I+ DHH+ K     A+
Sbjct: 121 EGYGPNEAAFRWAAEEGFGLVITVDCGISGIEEAAVLKELGVDLIITDHHEAKDVLPDAF 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P  +D       L  AGV F V   +   + +            LLDL  L T+ D
Sbjct: 181 AMIHP-GVDSNYPYSKLAGAGVAFKVAHALLGRVPE-----------ELLDLAVLGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311
           +VPLIG NR    KG+        PG+ AL +  + +   +T E++G+  GP INA GR+
Sbjct: 229 LVPLIGENRLLAAKGIEALNASERPGILALRKVCSLVEDELTEESVGFAFGPRINAAGRL 288

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             +     +L+++  +E E LA +LD  N+ R+ +   + E+A A V           V+
Sbjct: 289 DSAMPALEMLLAETMEEAEPLAEQLDQQNKQRQDIVKKIAEEATALVEQHYLS---DRVL 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV+ D+W+PG+VG++A+RL EK+ RP   +  + E G   GSGRSI  FD+         
Sbjct: 346 VVDSDQWNPGVVGIVASRLVEKYHRPVILLCHDAEKGTAKGSGRSIAAFDL--FAELNQT 403

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             IL   GGH  AAG+T+   N   L +     A + +P        +ID  L  S V+I
Sbjct: 404 ADILPHFGGHPAAAGMTLSSENVPVLRERLNAQAAS-LPDEAFIATTEIDLRLRVSDVSI 462

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            LI+ +    P+G GNP+P        ++ ++ +     HL+    +     L  I F  
Sbjct: 463 GLIEEMGRLSPFGMGNPSPRVVVEGANIRDLKRIGRDLTHLK-VLVTDGKTELDGIGFGF 521

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S    + + G L +N W G ++ QL + D + V+   F  +
Sbjct: 522 GDA----VDEVSSLAEVSLMGSLNINEWNGFRKPQLMIQDLAVVDYQLFDYR 569


>gi|325957035|ref|YP_004292447.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus
           30SC]
 gi|325333600|gb|ADZ07508.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus
           30SC]
          Length = 757

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 273/578 (47%), Gaps = 32/578 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E       + +K+ +  I A++   R +  D   DF   +    + DP ++ 
Sbjct: 2   KWQQRTAEELDPS---LIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    +   +IPDR  DGYG
Sbjct: 59  DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVYYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN       + +G +LIITVD G T  D ++YA   G+D IV DHH  + ++  AYA+V+
Sbjct: 119 PNIDRYHDIVADGTKLIITVDNGVTGIDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTLGSINETDIGFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++  A +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDVEAQKIADQIEELNNQRKELTTEVYDKCMALIRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRSI GF++   ++   EE +  
Sbjct: 346 PDFHEGVLGLVANKIVEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEE-LFT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++     G L +  +K  H      I       D  L    ++  ++  
Sbjct: 405 KFGGHDFACGLSMTEDKIGALREKLEKGFHVEGGLEIKE----YDMELPLQGLSPQILAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+  P+F+  N  +     +     H++     +   +L  I F       
Sbjct: 461 INQVGPFGTGDAQPIFSISNPTITQFFKIGKEKNHVKFNVAKKGG-SLAVIGFN------ 513

Query: 554 GEFLMQSRGKRM-HVTGHLCVNYWRGSKRCQLRVLDAS 590
            +FL  +    +  V   L +N +R     Q  +    
Sbjct: 514 KDFLNNNLLPFIARVFVQLSLNTYRNKISLQGIIEGIE 551


>gi|33152417|ref|NP_873770.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus ducreyi
           35000HP]
 gi|33148640|gb|AAP96159.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus ducreyi
           35000HP]
          Length = 573

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/563 (32%), Positives = 282/563 (50%), Gaps = 20/563 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +RN++       L   +  L   P +L + D+A   +++A     +I+I GD
Sbjct: 20  PLLNRLYQSRNIAT---LHDLERGLEYLHR-PQLLANIDQAVALLIEAFQTDMRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L        +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFAKVDYLIPDRFSQGYGLSLAVAEAVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ ++   +QGI V+V DHH    +   A AL+NPN ++       L   GV F V+
Sbjct: 136 ISSFEGVELLKSQGIKVLVTDHHLPAEKLPDADALINPNLVNCDFPSKALAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVP    NR  V +GL   R     P
Sbjct: 196 LALRSRMRELALFKVAEPNLAELLDLVALGTVADVVPFDHNNRILVHQGLNRIRSGCCRP 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL +      S + A +LG+ I P +NA GR+   +LG  LLI+D+      LA +L
Sbjct: 256 GIRALADIAKRDLSSLQAADLGFAIAPRLNAAGRLENMSLGVELLITDNIALAHQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A           +QA  IV+    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQKRKAFEQEMKAEALAICAKLPSLMQKEQAHGIVLYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++    +    ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESEDSVYLKGSARSIAGLHMRDVLERIDSTYPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F      F +     +       V   DG L A  + + + ++L+SAGP+G   P P+
Sbjct: 436 DDFSTFQTVFDEIVDQFISPEQLQGVIYTDGELQADEMTLEIAELLQSAGPWGQHFPEPL 495

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F     ++   R++   HL++  +  D  E   AI F V      +  +    K   +  
Sbjct: 496 FEGQ-CRILQQRILAGKHLKLMIQFNDRFELYDAIWFNVDLRTFPDLSI----KHAQIVY 550

Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592
            L +N +RG+K  QLRV    P+
Sbjct: 551 KLDINEFRGNKNIQLRVESLIPL 573


>gi|256822060|ref|YP_003146023.1| single-stranded-DNA-specific exonuclease RecJ [Kangiella koreensis
           DSM 16069]
 gi|256795599|gb|ACV26255.1| single-stranded-DNA-specific exonuclease RecJ [Kangiella koreensis
           DSM 16069]
          Length = 584

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/562 (30%), Positives = 269/562 (47%), Gaps = 20/562 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+  NR +        L+ ++  L+P    L   D A   +V+AI    +I+I G
Sbjct: 29  SSVLNRIYSNRGI---QDAAELDYNLSQLLPY-HDLKGIDVAVELLVEAITEQRRILIVG 84

Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL    L+          +P+R   GYG +P L+E        LI+TVD 
Sbjct: 85  DFDADGATSSALTKLVLTDFGAKYVEFLVPNRFEFGYGLSPELVEVAKELNPDLIVTVDN 144

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S   ++ A   GI V++ DHH    E   A A+VNPN+  D     ++   GVVF V
Sbjct: 145 GISSIAGVKAAQEAGIKVLITDHHLAGDELPQADAIVNPNQPGDTFPSKNMAGVGVVFYV 204

Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
           L+ +   LR  N          +L   LD+VAL TV DVVPL   NR  V  GL + R  
Sbjct: 205 LLALRARLRDINWFTTQAIEEPNLAHNLDIVALGTVADVVPLDSNNRLLVHHGLRLIRAG 264

Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG+ AL++        +TA +LG+ +GP +NA GR+ + ++G   L++DDS+  + L
Sbjct: 265 RCRPGISALLQLAKRQLHKVTATDLGFAVGPRLNAAGRLDDMSIGIECLLADDSKTAKEL 324

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A  L  LN +R+ +E  M ++A +K+        + A  + +    WH G+VGLLA+R+K
Sbjct: 325 ADTLHSLNSDRQQVEQEMQDEALSKLEEVDWHAGEFAHSVCLYEPHWHQGVVGLLASRIK 384

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVE 449
           EK  +P    +  ++    GS RS++   I   ++         + K GGHAMAAGL++ 
Sbjct: 385 EKVNKPCIVFANADETSIKGSARSVKEVHIRDALALVDSRHPQLIEKFGGHAMAAGLSLA 444

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                +    F+K   +++       V + DG L    + I     L  AGP+G G P P
Sbjct: 445 LDKLEQFQQAFEKAVTDVLGGRAIEDVIETDGELMPQELTIETAVELTQAGPFGQGFPEP 504

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     ++ + R+V   HL++T +     + +QAIAFR+         +    +++   
Sbjct: 505 AFDGE-FEVLNHRIVGENHLKLTLQKYGQQDPIQAIAFRIDVEDW----LSQPAQKIRAV 559

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
               +N +      QL +    
Sbjct: 560 YKPDINDYYNVPELQLMIQYFE 581


>gi|78186350|ref|YP_374393.1| RecJ exonuclease [Chlorobium luteolum DSM 273]
 gi|78166252|gb|ABB23350.1| exonuclease RecJ [Chlorobium luteolum DSM 273]
          Length = 571

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/577 (28%), Positives = 261/577 (45%), Gaps = 19/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           FRW  L   +    A+   +   +   +AR L+NR +   D A++F   S   L   PL+
Sbjct: 4   FRWTILSADDAAVAAMM--ESINVSAPLARALLNRGIDTFDAARNFFRASFESLH-SPLL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D + A +R+++A+   EKIM++GDYDVDG    A++ RFL       + YI DR  +G
Sbjct: 61  LGDMEIAVKRVLKAVREGEKIMLYGDYDVDGTTGTAMLHRFLGGLGAEVSWYINDRFQEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +P  ++   + G  L+ITVDCG  + +A+  A   G+DVIV DHH+       A A+
Sbjct: 121 YGISPEGIDAAASRGVGLVITVDCGIRANEAVSRARGLGMDVIVCDHHE-PDILPEAVAI 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP           LC  GV F  +  I      D            LD VA+AT  D+V
Sbjct: 180 LNPKVPGCRYPFRELCGCGVAFKFIQAIA-----DETGDGEKAWREYLDYVAIATAADMV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
            L   NR  V +GL+  +      L+ +   + ++   +   N+ + I P INA GR+G 
Sbjct: 235 ELTDENRVLVREGLVRIQSAPAMSLQEMFRVMKVAPKEVGMFNIAFGIAPRINAAGRMGS 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +      L+S+ + +  + A  L+ LN  RR  ++ ++E+AE  +          S IV+
Sbjct: 295 AQRAMEWLLSESAADARLHADGLEELNTLRRQTDADIMEKAEKMLDGHFASY--CSSIVL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+++ E+   P+  +     G   GS RS+EG D+  ++       +
Sbjct: 353 YDESWHIGVLGIVASKMLERHYLPTVIMGGMN-GLVKGSVRSVEGLDVYGVLEEC--GDL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGH  AAG+T+   N       F   + + +          ID  L         I
Sbjct: 410 LLQFGGHRQAAGVTLLPENLSAFRKRFDAASASRLGIRERQKELVIDSELRLEDAGEKFI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            +LE   P+G GN  PVF     ++    R++   H++ +           I F      
Sbjct: 470 RVLEQFSPHGFGNREPVFMTKGLRVHGRPRLLKERHVKFSVRDGSGRFFDVIGFDRRDVY 529

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + L    G    +   L    W G  + Q R+ D 
Sbjct: 530 --DALQGDSGAVFSMAYSLENRVWNGRAQLQCRLYDL 564


>gi|254479344|ref|ZP_05092681.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034710|gb|EEB75447.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Carboxydibrachium pacificum DSM 12653]
          Length = 820

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/578 (32%), Positives = 295/578 (51%), Gaps = 29/578 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RWV    +  + +   +  K+ +  IVA++L +R V     ++FL PS+  L+  P  L
Sbjct: 5   YRWVVR--ERDLKKIEELKVKYHLDGIVAQILSSRGVKG--VEEFLMPSLDRLI-SPFKL 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I + I     I I+GDYDVDG  S +L+   L       + YIP+R+ +GY
Sbjct: 60  KGVKEAKELIEKHIKEGSLITIYGDYDVDGITSTSLLYLALKKLGAKVDYYIPERLSEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +EK   EG +L+ITVDCG T+   ++ A   G+DVI+ DHH +  E   A  ++
Sbjct: 120 GINEEALEKIAYEGTKLVITVDCGITALKEVEKAKKMGLDVIITDHHSIPEEIPKADVVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+          L   GV F +   +                   LDLVAL TV DVVP
Sbjct: 180 NPHLPG-AYPFSELAGVGVAFKLAQALI-----------GEQAFEFLDLVALGTVADVVP 227

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           LIG NR  V +GL      GN GLKALIE   +S   +   ++G++I P +NA GR+  +
Sbjct: 228 LIGENRVIVKEGLKRLNNTGNLGLKALIEIAGVSGRELDEYHIGFIIAPRLNAAGRLKSA 287

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLI+ D +E + +A  L+  N  R+ ME+ +L++A  K+  +   ++   VIV+ 
Sbjct: 288 EAAVRLLITSDEKEAQDIAKYLNEENLRRQNMENTILKEAIEKIEKEG--LKDDKVIVLW 345

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WHPG++G++++++ E +GRPS  I    + +G GSGRS+EGF+I K +++   + +L
Sbjct: 346 QEGWHPGVIGIVSSKITEMYGRPSILIGLIGE-EGKGSGRSVEGFNIYKALNYC--KDLL 402

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           VK GGH MA GLT+++ N     D   ++A   V  +   P  KID V+     ++ +  
Sbjct: 403 VKYGGHEMAGGLTIQKENLKLFKDKINEYADRFVKEIDLVPALKIDAVVKKDKADLGIAK 462

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
            ++   P+G GNP P+  F    +  I  + +  H++     +D    + + F       
Sbjct: 463 KIQQLKPFGVGNPKPLLLFEGLTIDKIFDIKDGKHIK-ILAKKDEMVYELLIFNSS---- 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + L  S G  +   G L +++W G +   + V D   
Sbjct: 518 SDGLKISEGDVVDAVGTLEISHWNGIESAIVNVKDIRV 555


>gi|168186871|ref|ZP_02621506.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum C str. Eklund]
 gi|169295193|gb|EDS77326.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum C str. Eklund]
          Length = 588

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/601 (27%), Positives = 296/601 (49%), Gaps = 40/601 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W   + +        + ++  I DI A++L NR + S + AK F+N S+  L   P ++
Sbjct: 3   QWRLKVTKCDTKL---LAKQCNISDIAAKILANRKIQSEEEAKKFINASLDDLY-SPFLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +    ++ AI   +KI+++GDYD DG  S +++ + L     N   YIPDR  +GY
Sbjct: 59  KDMQQGVDIVLDAIDEGKKIVVYGDYDADGVTSTSILYKGLLEIDANVEYYIPDREAEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190
           G + + ++   ++GA++++T D G ++ + +++A   G+ V+V DHH++  +E       
Sbjct: 119 GMSSNRLKILKDQGAEVLLTCDNGISAVEEVKFAKELGMQVVVTDHHELPFKEEDGERKY 178

Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A++NP R D       LC AG+ F  +  +Y  L  D+           +++  
Sbjct: 179 IIPEADAVINPKRNDCTYPFKMLCGAGIAFKFIQALYVSLGLDDSDA-----YKFIEIAG 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           + T+CDVV L+  NR      L + +   N GL+ L+  +      I + N+G+MIGP I
Sbjct: 234 IGTICDVVDLVSENRIIAKNALKMMKSTSNLGLQCLMNALGINKEEIKSYNIGFMIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + L   LLI++D +  + LA  L  LN+ R+ M +  +E+    V  +    
Sbjct: 294 NATGRLDTAALSVELLITEDEERAKELANILYDLNKTRQEMTTRNVEEIIDVV--ENSSY 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +Q  V+V+  +  H  I G++A +++E+F  P+  ++ +      GSGRSIE +++    
Sbjct: 352 RQDKVLVIYKEDIHESIAGIVAGKIRERFNVPTIILT-KGKEMPKGSGRSIEEYNL--FE 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + ++ K GGH MAAGL+++  N  +L     +     +      P  KID  +  
Sbjct: 409 ELLKCKEVIEKFGGHPMAAGLSIKEENIEKLRTMLNENC--TLTDDDIIPKIKIDKRIPL 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
           S+V   LI+ LE+  P+G GNP P+FA  N K+ +IR++      +++T  + D+E + A
Sbjct: 467 SSVREELIEELENLEPFGKGNPAPLFAEKNIKILNIRIMGKDQNTIKLTCLTNDNEKIDA 526

Query: 544 IAFRVYG-----------TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           I F                     +       + +  +  +N + G +  QLRV D    
Sbjct: 527 IIFNRADEFKDMVEKSLRENFETVIASPYNLNLDLIFYPMINEFNGYRNKQLRVKDFRVS 586

Query: 593 E 593
           +
Sbjct: 587 K 587


>gi|85712974|ref|ZP_01044013.1| RecJ [Idiomarina baltica OS145]
 gi|85693212|gb|EAQ31171.1| RecJ [Idiomarina baltica OS145]
          Length = 570

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/558 (30%), Positives = 273/558 (48%), Gaps = 19/558 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           P  + ++L +R V+       L+  ++  M     L   D A   +++A  ++E I+I G
Sbjct: 22  PATIRQILAHRGVTRPEQ---LDLRLQG-MAHFSQLRGIDAACEAMLEAREHNEAIVICG 77

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL+M  L           +P+R+ +GYG + +++E+   +   LI+TVD 
Sbjct: 78  DFDADGATSTALLMSALPQLGFTKVTYRVPNRMTEGYGLSAAIVEQLAEQQVGLILTVDN 137

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G  ++DA   A   GI +++ DHH   +   PA A+VNPN+         L   GV F +
Sbjct: 138 GIAAHDAAIRAAELGIKLVITDHHLAPASLPPAAAIVNPNQPGCEFPSKALAGVGVAFYL 197

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277
           L  +   LR+        +L   LDLVAL TV DVVPL   NR  V +GL   +  Q   
Sbjct: 198 LAALRARLRETG--EQTPNLADFLDLVALGTVADVVPLDKNNRILVQQGLNRIKVGQCRA 255

Query: 278 GLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++ALIE+       + A +LG+ IGP INA GR+ + +LG   L++   +  + LA  L
Sbjct: 256 GIRALIEQSGRDIAKLQASDLGFAIGPRINAAGRLDDISLGIECLLASS-ERAQQLAQTL 314

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEKF 394
             LN+ RR +E+ M  +AE+ V     D Q    +VIV+  ++WH G++G++A R+KE+ 
Sbjct: 315 CDLNKQRREIEADMKAEAESIVSQLQLDNQGQLPNVIVLYNEQWHSGVIGIVAGRVKERT 374

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVN 452
            RP    + E D    GS RSI+G  I  ++         ++ + GGHAMAAGL++    
Sbjct: 375 HRPVIVFAKESDTHLKGSARSIDGVHIRDLLERVDTQYPDVIERFGGHAMAAGLSLAEAQ 434

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
                    + A + +   +  PV   DG L+   + +  I  LE  GP+G   P P+F 
Sbjct: 435 LNTFQSAVSQAAADWLTDEVVQPVIWSDGQLSDEQLTVEFIQQLERFGPWGQKFPEPIFD 494

Query: 513 FPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
               ++   R+V   HL++  +S +     AI+F              + + + +     
Sbjct: 495 GE-FRILQQRIVGEKHLKLVVQSPEGGIFDAISFYCDIEQWP----NHQCQWVELVYKPQ 549

Query: 573 VNYWRGSKRCQLRVLDAS 590
           +N++RG    QL V    
Sbjct: 550 LNHFRGRTSVQLLVEQLR 567


>gi|161507672|ref|YP_001577626.1| single-stranded-DNA-specific exonuclease [Lactobacillus helveticus
           DPC 4571]
 gi|160348661|gb|ABX27335.1| Single-stranded-DNA-specific exonuclease [Lactobacillus helveticus
           DPC 4571]
          Length = 757

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/579 (27%), Positives = 276/579 (47%), Gaps = 34/579 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E    A  + +K+ +  I AR+   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQQRTAEE---LAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 59  DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  + ++YA   G+D I+ DHH  +  +  AYA+V+
Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ-----------DPVPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLDVLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++    V       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  ++G+  GSGRS  GF++   ++   +E +L 
Sbjct: 346 PDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDALNPL-KESLLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L   F+   H              D  L    ++   +  
Sbjct: 405 KFGGHDFACGLSMEEDKVNDLRKKFEADFHVDGGLETKE----YDMELPMHDLSPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI-AFRVYGTP 552
           +   GP+G G+P P+F+  +  +     +     H+++T   +D     AI  F      
Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLTANKKDGNL--AIVGFN----- 513

Query: 553 LGEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590
             ++L  +    +      L +N +R     Q  +   +
Sbjct: 514 -KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGIA 551


>gi|17232619|ref|NP_489167.1| single-stranded-DNA-specific exonuclease [Nostoc sp. PCC 7120]
 gi|17134265|dbj|BAB76826.1| single-stranded-DNA-specific exonuclease [Nostoc sp. PCC 7120]
          Length = 716

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/618 (27%), Positives = 290/618 (46%), Gaps = 51/618 (8%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW   L +     A  +     +  IV ++L+NR + + + A+ FL P    L   
Sbjct: 16  LPNQRWHIHLQKTD--LAQKLADVTNLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSP 73

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
                D   +   + +AI    KI I GDYD DG  S AL++R L       +  IP R+
Sbjct: 74  LAEFPDLAMSVELLQEAIACQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRM 133

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++E+F NEG +LI+TVD G ++++ +  A   G++VI+ DHH +  +  PA
Sbjct: 134 HEGYGINKRIVEEFHNEGVRLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPA 193

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP  + + S    +   GV +++ V + + L +   +     +  +L L  L T+ 
Sbjct: 194 DAILNPKLIAESSPYRGVAGVGVAYILAVTLAQKLDKTKGL-----IQPMLALFTLGTIA 248

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---------------------- 289
           D+ PL G+NR +V +GL +  +   PG++ALI+   +                       
Sbjct: 249 DLAPLSGVNRRWVKRGLKLLPKSQLPGIQALIQVAGVQATGEGVGVQGSKGVGKDKLILP 308

Query: 290 --------SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
                     +  E++G+ +GP INA GRIG+      LL +DD       AM+ +  N 
Sbjct: 309 VQSPATTPKTLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEGLALERAMQCEQANT 368

Query: 342 NRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400
           +R+ M   + +QA A V       +QQ  V+VV    WH G++G++A+RL E++G P F 
Sbjct: 369 SRQQMCEEIEQQAIAHVEELYATSLQQDRVLVVIQPHWHHGVIGIVASRLVERYGVPVFI 428

Query: 401 ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460
            ++E++    GS RSI  F++   + +     +L K GGH  A G +    N  +L    
Sbjct: 429 GTYEDEELIRGSARSIPEFNVFTALEYCH--DLLGKYGGHKAAGGFSFPATNLPKLRSRL 486

Query: 461 QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS 520
           ++FA+  +      P+ +ID   N + ++  L   L S  P G  NP+PVF  PN ++  
Sbjct: 487 REFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDNPDPVFWTPNVQVVE 546

Query: 521 IRVVNLAHLQMTFE---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577
            ++V   H+++T     +      +AIA+R                R+ +   L  N + 
Sbjct: 547 QQIVGKGHIKVTLSQTINGQQYQFKAIAWRWRDYY-------PLPSRLDIAYKLRENNFN 599

Query: 578 GSKRCQLRVLDASPVEGH 595
           G+   +L +L     +  
Sbjct: 600 GNTSLELELLGVRLAKKQ 617


>gi|314936251|ref|ZP_07843598.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           hominis subsp. hominis C80]
 gi|313654870|gb|EFS18615.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           hominis subsp. hominis C80]
          Length = 757

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/581 (24%), Positives = 284/581 (48%), Gaps = 30/581 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S ++W+    ++ I+    I ++  +  IV ++L +++++  D     +N + +    D 
Sbjct: 4   SKYKWLYEAPKQNISS--EIIKEFNLSPIVRKILESKSITQYDEINTLINGTNKK--HDS 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +++D  KA  RI  AI  +E+I+++GDYD DG  S  ++++ L         YIP+R  
Sbjct: 60  WLMSDMQKAVDRINLAIDKNERILVYGDYDADGVTSTTILVQTLRKLGAEVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   ++ ++     G+DVIV DHH++      AY
Sbjct: 120 EGYGPNKYAFQNAYDEGVSLIITVDNGIQGHEEIEMVQVLGVDVIVTDHHEIGRTLPKAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P   +      +LC AGV + +   +     +             + L  + T+ D
Sbjct: 180 AIIHPMHPEFEYPFKYLCGAGVAYKLSQCLIDHPPE-----------YFIVLATIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +GL    +     +++L+ +   +  I  E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRTIVQEGLKYLNQSCPFQIQSLLNQAGFNDEIDEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+++DS+E   LA +++  N  R+ + + + E+A      +         ++
Sbjct: 289 DASLAAELLMAEDSEEANFLAEQVEAFNIERKDIVAQITEEALLMANEKV--ENGDKFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ + E     GS RSIE   +      +  +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDLEQHHAKGSARSIEQVSM--FEILSAHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+E  N   L     ++   +       P   I   L+   + ++
Sbjct: 405 DLISKFGGHHMAAGMTMEIDNIDALSKGLNEWMVQLSKHTSLEPTKHITTKLSEDDITVS 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  ++   P+G     P+F   + ++  ++ +     HL++       + L    F   
Sbjct: 465 NIHDIKILKPFGTDFEKPLFELDDTEVNDVKAIGKDKNHLKLVTGQAKLQHL----FWKN 520

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           G  + +  +   G+ +++ GHL +N W G++  Q+ + D +
Sbjct: 521 GGLITQIEL---GQPVNIIGHLQINEWNGNQTPQMMIQDLA 558


>gi|50914099|ref|YP_060071.1| hypothetical protein M6_Spy0753 [Streptococcus pyogenes MGAS10394]
 gi|50903173|gb|AAT86888.1| RecJ [Streptococcus pyogenes MGAS10394]
          Length = 736

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  + L   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDELLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|325125975|gb|ADY85305.1| Single-stranded-DNA-specific exonuclease [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 758

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 277/574 (48%), Gaps = 32/574 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W           A  + ++  +  + A++   R +  +   D+   +    + DP ++ 
Sbjct: 2   KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QA+   EKI I+GDYD DG  + A+M   L+    + + +IPDR  DGYG
Sbjct: 59  DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+    +  + +G +LIITVD G+T  + + YA + G+DVIV DHH  K E+  AYALV+
Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +                   L+L  + T+ D+V +
Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +      PGL+ALI    ++   I  E++G+ I P +NA GR+ +++
Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L  RLL+++   E + LA +++ LN  R+ +  A ++ AEA++  +    Q+ + + +  
Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++GL+A ++ EK+ +P+  ++  E G   GSGRS +GF++   +    E   + 
Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  A GL+    N  +L   F +             V + DG ++   V++  +  
Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L  AGP+G  NP PVF     ++ + R +       +F       ++A+ F      L +
Sbjct: 463 LAQAGPFGTDNPQPVFLLDRPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++    +   +   L  N ++G    Q R++D 
Sbjct: 514 TVLPYLRQ---MLVKLASNTFKGKTNVQFRIVDL 544


>gi|193078656|gb|ABO13707.2| ssDNA exonuclease [Acinetobacter baumannii ATCC 17978]
          Length = 565

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/559 (31%), Positives = 262/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   D A   + QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + I A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN +RR +E  M +QA + + +     Q   + +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    I       DG L  SA+ +  ++ +E  GP+G   P P 
Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNTA----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564


>gi|313124008|ref|YP_004034267.1| exonuclease recj [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280571|gb|ADQ61290.1| Exonuclease RecJ [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 758

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 276/574 (48%), Gaps = 32/574 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W           A  + ++  +  + A++   R +  +   D+   +    + DP ++ 
Sbjct: 2   KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QA+   EKI I+GDYD DG  + A+M   L+    + + +IPDR  DGYG
Sbjct: 59  DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+    +  + +G +LIITVD G T  + + YA + G+DVIV DHH  K E+  AYALV+
Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +                   L+L  + T+ D+V +
Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +      PGL+ALI    ++   I  E++G+ I P +NA GR+ +++
Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L  RLL+++   E + LA +++ LN  R+ +  A ++ AEA++  +    Q+ + + +  
Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++GL+A ++ EK+ +P+  ++  E G   GSGRS +GF++   +    E   + 
Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  A GL+    N  +L   F +             V + DG ++   V++  +  
Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L  AGP+G  NP PVF     ++ + R +       +F       ++A+ F      L +
Sbjct: 463 LAQAGPFGTDNPQPVFLLDKPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++    +   +   L  N ++G    Q R++D 
Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544


>gi|21910175|ref|NP_664443.1| putative single-strand DNA-specific exonuclease [Streptococcus
           pyogenes MGAS315]
 gi|28896125|ref|NP_802475.1| single strand DNA-specific exonuclease [Streptococcus pyogenes
           SSI-1]
 gi|21904368|gb|AAM79246.1| putative single-strand DNA-specific exonuclease [Streptococcus
           pyogenes MGAS315]
 gi|28811375|dbj|BAC64308.1| putative single strand DNA-specific exonuclease [Streptococcus
           pyogenes SSI-1]
          Length = 736

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 273/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDVAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|210616296|ref|ZP_03291024.1| hypothetical protein CLONEX_03245 [Clostridium nexile DSM 1787]
 gi|210149851|gb|EEA80860.1| hypothetical protein CLONEX_03245 [Clostridium nexile DSM 1787]
          Length = 586

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/584 (28%), Positives = 299/584 (51%), Gaps = 39/584 (6%)

Query: 30  ALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
              I +K  I  I+AR++ NR+ +  +  + +LN +I  L  D +++ D DKA   +++ 
Sbjct: 13  FQEIAEKFQIHPILARLIRNRDVIGDEAIQLYLNGTIADLY-DGMLMKDMDKAVDILLEK 71

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I   +KI I GDYD+DG  S  +++  + +    A++ IPDR+ DGYG N +L+++  ++
Sbjct: 72  IREDKKIRIIGDYDIDGINSTYILLEGIKYLGGEADIDIPDRMKDGYGLNRNLIDRAFDD 131

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE---------IPAYALVNPNR 199
               IIT D G  + + + Y  + G+ +IV DHH++  EE          PA A+++P +
Sbjct: 132 DIDTIITCDNGIAAREEIAYGKSLGMTIIVTDHHEIPYEEVESEKRYILPPADAVIDPKQ 191

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
                    LC AGV + ++  ++    +D       D+  L++ VA+ATV DV+ L+G 
Sbjct: 192 QTCAYPFKELCGAGVAYKLIEALFGACGKD-----IEDVDYLMENVAIATVGDVMDLVGE 246

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGS 318
           NR +V +GL + +R  N GL+AL+E   +    ++A ++G++IGP +NA GR+  +    
Sbjct: 247 NRIFVKQGLEMLKRTNNLGLRALMECTGVPVERLSAYHIGFVIGPCLNASGRLDTAKRAL 306

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            LL +   +E ++LA  L  LN NR+ M ++ +E+A  +V  +   + +  V+V+     
Sbjct: 307 ELLCAKTKKEADILAGDLKALNDNRKDMTASAVEEAVKQV--EETRLGEDKVLVIYLPDC 364

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H  + G++A R++E++ +P F ++  E+G   GSGRSIE + + + ++    + +L K G
Sbjct: 365 HESLAGIVAGRVRERYHKPVFILTKAEEGV-KGSGRSIESYHMYEELNKC--KSLLTKFG 421

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH +AAGL++E  N  RL +       + +      P   ID  +    +N A +D LE 
Sbjct: 422 GHKLAAGLSLEEENVDRLRETLNDL--STLTQEDLIPKISIDMQMPLGYINEAFVDELEL 479

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G GN  PVF   N ++ S R++      L+M  +      + A+ F      L  F
Sbjct: 480 LEPFGKGNIKPVFVEKNIEILSARILGKNKNVLKMQVQDAPGTQMDAMYFGDVEAFLEFF 539

Query: 557 LMQSRGKRMH-------------VTGHLCVNYWRGSKRCQLRVL 587
             +     +               T +  +N + G K  Q+ + 
Sbjct: 540 REKYGKPAVDGLLRGQRSKVEAAFTYYPGINEYMGQKTVQIIIQ 583


>gi|116514284|ref|YP_813190.1| single-stranded DNA-specific exonuclease [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093599|gb|ABJ58752.1| exonuclease RecJ [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 758

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 277/574 (48%), Gaps = 32/574 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W           A  + ++  +  + A++   R +  +   D+   +    + DP ++ 
Sbjct: 2   KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QA+   EKI I+GDYD DG  + A+M   L+    + + +IPDR  DGYG
Sbjct: 59  DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+    +  + +G +LIITVD G+T  + + YA + G+DVIV DHH  K E+  AYALV+
Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +                   L+L  + T+ D+V +
Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +      PGL+ALI    ++   I  E++G+ I P +NA GR+ +++
Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L  RLL+++   E + LA +++ LN  R+ +  A ++ AEA++  +    Q+ + + +  
Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++GL+A ++ EK+ +P+  ++  E G   GSGRS +GF++   +    E   + 
Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  A GL+    N  +L   F +             V + DG ++   V++  +  
Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L  AGP+G  NP PVF     ++ + R +       +F       ++A+ F      L +
Sbjct: 463 LAQAGPFGTDNPQPVFLLDRPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++    +   +   L  N ++G    Q R++D 
Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544


>gi|20807647|ref|NP_622818.1| single-stranded DNA-specific exonuclease [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516192|gb|AAM24422.1| Single-stranded DNA-specific exonuclease [Thermoanaerobacter
           tengcongensis MB4]
          Length = 820

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/578 (32%), Positives = 296/578 (51%), Gaps = 29/578 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RWV    +  + +   +  K+ +  IVA++L +R V     ++FL PS+  L+  P  L
Sbjct: 5   YRWVVR--ERDLKKIEELKVKYHLDGIVAQILSSRGVKG--VEEFLMPSLDRLI-SPFEL 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I + I     I I+GDYDVDG  S +L+   L       + YIP+R+ +GY
Sbjct: 60  KGVKEAKELIEKHIKEGSLITIYGDYDVDGITSTSLLYLALKKLGAKVDYYIPERLSEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +EK   EGA+L+ITVDCG T+   ++ A   G+DVI+ DHH +  E   A  ++
Sbjct: 120 GINEEALEKIAYEGAKLVITVDCGITALKEVEKAKKMGLDVIITDHHSIPEEIPKADVVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+          L   GV F +   +                   LDLVAL TV D+VP
Sbjct: 180 NPHLPG-AYPFSELAGVGVAFKLAQALI-----------GEQAFEFLDLVALGTVADIVP 227

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314
           LIG NR  V +GL      GN GLKALIE   +S   +   ++G++I P +NA GR+  +
Sbjct: 228 LIGENRVIVKEGLKRLNNTGNLGLKALIEIAGVSGRELDEYHIGFIIAPRLNAAGRLKSA 287

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLI+ D +E + +A  L+  N  R+ ME+ +L++A  K+  +   ++   VIV+ 
Sbjct: 288 EAAVRLLITSDEKEAQDIAKYLNEENLRRQNMENTILKEAIEKIEKEG--LKDDKVIVLW 345

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WHPG++G++++++ E +GRPS  I    + +G GSGRS+EGF+I K +++   + +L
Sbjct: 346 QEGWHPGVIGIVSSKITEMYGRPSILIGLIGE-EGKGSGRSVEGFNIYKALNYC--KDLL 402

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           VK GGH MA GLT+++ N     D   ++A   V  +   P  KID V+     ++ +  
Sbjct: 403 VKYGGHEMAGGLTIQKENLKLFKDKINEYADRFVKEIDLVPALKIDAVVKKDKADLGIAK 462

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
            ++   P+G GNP P+  F    +  I  + +  H++     +D    + + F       
Sbjct: 463 KIQQLKPFGVGNPKPLLLFEGLTIDKIFDIKDGKHIK-ILAKKDEMVYELLIFNSS---- 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + L  S G  +   G L +++W G +   + V D   
Sbjct: 518 SDGLKISEGDVVDAVGTLEISHWNGIESAIVNVKDIRV 555


>gi|104774194|ref|YP_619174.1| RecJ, single-stranded DNA specific exonuclease [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423275|emb|CAI98110.1| RecJ, single-stranded DNA specific exonuclease [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 758

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 277/574 (48%), Gaps = 32/574 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W           A  + ++  +  + A++   R +  +   D+   +    + DP ++ 
Sbjct: 2   KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QA+   EKI I+GDYD DG  + A+M   L+    + + +IPDR  DGYG
Sbjct: 59  DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+    +  + +G +LIITVD G+T  + + YA + G+DVIV DHH  K E+  AYALV+
Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +                   L+L  + T+ D+V +
Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +      PGL+ALI    ++   I  E++G+ I P +NA GR+ +++
Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L  RLL+++   E + LA +++ LN  R+ +  A ++ AEA++  +    Q+ + + +  
Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KRRGYQKEATLTLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++GL+A ++ EK+ +P+  ++  E G   GSGRS +GF++   +    E   + 
Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  A GL+    N  +L   F +             V + DG ++   V++  +  
Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L  AGP+G  NP PVF     ++ + R +       +F       ++A+ F      L +
Sbjct: 463 LAQAGPFGTDNPQPVFLLDRPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++    +   +   L  N ++G    Q R++D 
Sbjct: 514 TVLPYLRQ---MLVKLASNTFKGKTNVQFRIVDL 544


>gi|74317789|ref|YP_315529.1| exonuclease RecJ [Thiobacillus denitrificans ATCC 25259]
 gi|74057284|gb|AAZ97724.1| RecJ exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 565

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/573 (31%), Positives = 269/573 (46%), Gaps = 26/573 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
                A  ++  +    AR+   R VS  D         +  L+P P  + + D+AAR +
Sbjct: 10  PTEVCAALEQAGLAPAWARLYAARGVSHPDQIAH----RLPQLLP-PTAMLNSDRAARLL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             AI   +K++I GDYD DGA + AL +R L       +  +P+R+  GYG  P ++   
Sbjct: 65  ADAIEAHKKLLIVGDYDADGATACALGVRGLRMLGARVDYLVPNRLEHGYGLTPDIVRIA 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVD G  + + +  A   GI V+V DHH        A  +VNPN+      
Sbjct: 125 AARQPDLLITVDNGIAAVEGVAAANALGIPVLVTDHHLPGDALPDAACIVNPNQPHCAFP 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAY 263
             +L   GV+F VL+ +   LR+          DL  LLDLVAL TV DVV L   NR  
Sbjct: 185 SKNLAGVGVMFYVLLALRAELRRRGAYEQVAEPDLRVLLDLVALGTVADVVRLDANNRTL 244

Query: 264 VVKGLMVARRQ-GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R     PG+ AL +         T  +LG+M+GP +NA GRI +  LG   L
Sbjct: 245 VAQGLARMRAGLACPGIAALFQAAGREPARATVFDLGFMLGPRLNAAGRIDDMALGIECL 304

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           ++D     + LA +LD LN+ RR +E+ ML++A A +         +  +      WH G
Sbjct: 305 LADSPSAAQQLAQRLDALNRARRDVEADMLDEALAILAR--FSPSDSYSLTAYQPDWHIG 362

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439
           ++G+LA+RLK+KF RP+  ++  E G+  GSGRSI G  +   +        G+++K GG
Sbjct: 363 VIGILASRLKDKFHRPTVVLAASESGELKGSGRSIPGLHLRDALDLVDKRHPGLILKFGG 422

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGL++           F+     ++       V + DG L  +     L   LE  
Sbjct: 423 HAMAAGLSIAAGRQEEFAHAFEAVVRGLIDPADLEGVIETDGELELAEHRYELALELEH- 481

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
             +G G P P+F      + + RVV   HL++T  ++D    +A+ F         F   
Sbjct: 482 AVWGQGFPAPLF-TGVFDVAAQRVVGDKHLKLTL-ARDGNAFEAMRF---------FQSD 530

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              +R+H    L  N + G +  QL++    P 
Sbjct: 531 PLPERIHAVYALMPNEFNGRRTLQLKLQHWEPA 563


>gi|158320745|ref|YP_001513252.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus
           oremlandii OhILAs]
 gi|158140944|gb|ABW19256.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus
           oremlandii OhILAs]
          Length = 587

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/602 (29%), Positives = 299/602 (49%), Gaps = 43/602 (7%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
            +W     +    R   +++K  I  ++ ++LVNR+++ +     F++ ++  L  DP  
Sbjct: 2   KKWFVKNKKFDYGR---MSEKFNISPLICKLLVNRSITEERLISSFIDSNLDHLH-DPKK 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KAA  +   I   ++I I GDYDVDG  S  ++   LS C  + +  IPDRI DG
Sbjct: 58  MKDVVKAASILKSKIETHKRIRIIGDYDVDGVISTYILFMALSKCGADVDYDIPDRIKDG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI----- 189
           YG N S++E+  +EG   IIT D G ++ + +QYA + G+ VIV DHH +   E      
Sbjct: 118 YGINRSIIERSKSEGIDTIITCDNGISAIEPIQYAKDLGLTVIVTDHHDIPFIEDEESKR 177

Query: 190 -----PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 A A++NP + +       LC AGV F ++ ++Y  ++         +   L++ 
Sbjct: 178 TFISSCADAIINPKQEECDYEFKSLCGAGVAFKLIQVLYEKMKI-----PMEESFRLIEF 232

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGP 303
           VA+ATVCDVV LI  NR +V +GL   +   N GL AL++   I S  I+  +LG++IGP
Sbjct: 233 VAIATVCDVVDLIDENRIFVKQGLEAIKTTNNLGLMALMKESGIESKSISVYHLGFIIGP 292

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+  +  G RLLI++D +E++ LA +L  LNQ+R+ M    +E+A   +  +  
Sbjct: 293 CINASGRLDNAKKGLRLLIAEDREEVDSLAKELYELNQDRKDMTIKGVEKAIEII--EGT 350

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           DI+   V V+     H  + G++A R+KE++  P+  ++  E+G   GSGRSI+ +++  
Sbjct: 351 DIKNHKVFVIYMPEVHESLAGIIAGRIKEQYHVPTIVLTKSEEGV-KGSGRSIDCYNM-- 407

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                  + +L K GGH MAAGL+++      L +   +     +      P   +D  L
Sbjct: 408 FEELLKCKDLLRKFGGHPMAAGLSLDEDQVENLREKLNQVTD--LTEEDLIPTINLDMGL 465

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETL 541
               ++  LI+ +E   P+G GN  P+F   N ++    ++      L++   S+  + +
Sbjct: 466 EIDRIDYELIEDIERLSPFGKGNNKPLFGDKNIRVIKGHILGQNRNVLKLKLLSKQGKYM 525

Query: 542 QAIAFR-----------VYGTPLGEFLMQSRGKR--MHVTGHLCVNYWRGSKRCQLRVLD 588
             I F             +G+   E L Q       + +  +  +N +      QL + D
Sbjct: 526 DGIYFGDIKAFEELITTRFGSDELERLYQGSNTNIVIDIAFYPTINTYMERSNIQLTIED 585

Query: 589 AS 590
             
Sbjct: 586 FR 587


>gi|326390126|ref|ZP_08211687.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993774|gb|EGD52205.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 815

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/576 (30%), Positives = 294/576 (51%), Gaps = 23/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+       +     I +++ +  I+A +L +  ++    K+FLNP ++ L   P +L
Sbjct: 9   YRWILKE-NPNLQLTQEIQREYGLHKIIADILSS-KLNAQEVKNFLNPDLKDLY-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I   + I I+GDYDVDG  + +++   L       + YIP+R+V+GY
Sbjct: 66  RGIKEAKELIQQHIALKDLITIYGDYDVDGITATSVLYLTLKKLGAKVDYYIPERLVEGY 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAQFLGIDVIITDHHSIPKEIPQADVVI 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+  D       L   GV F +   +              +   LLD+V++ T+ D+VP
Sbjct: 186 NPHLPDIEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKALI+     +  I   ++G+++ P +NA GR+  +
Sbjct: 235 LLGENRIIVKEGLKRLNETRNIGLKALIKASGLQNIEIDEYHVGFILAPRLNAAGRLRSA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS D +E++ +A  L+  N NR+ +E+ +L++A  K+  +  D+ +  VIV+ 
Sbjct: 295 EAAVRLLISQDEKEVKEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ K + +   +  L
Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  +    ++I +  
Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYAATVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  +  +N    +     +D    + + F V      
Sbjct: 471 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIAQKDKFGYELMLFDVSDQGND 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G  + V G + +N W G +   + V D  
Sbjct: 531 ----VKIGDIIDVVGSIEINSWNGIESVMINVKDLR 562


>gi|90416816|ref|ZP_01224746.1| RecJ exonuclease [marine gamma proteobacterium HTCC2207]
 gi|90331569|gb|EAS46805.1| RecJ exonuclease [marine gamma proteobacterium HTCC2207]
          Length = 583

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/587 (30%), Positives = 282/587 (48%), Gaps = 29/587 (4%)

Query: 26  GINRALAITQKHA--IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
                 A+          ++ R+ + R V+   A   L   +  L P P  +   D A  
Sbjct: 4   EARTFDALDGDFDPQFDPLLKRIYLARGVTQQAA---LQRQLSCL-PSPSSMLGIDTAVA 59

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLM 142
            +  A+   ++++I GD+D DGA S ALM+  L+       +  +P+R   GYG  P ++
Sbjct: 60  ILAAALVEQKRVLIVGDFDADGATSSALMVLALTAMGYQHVDFLVPNRFDYGYGLTPEIV 119

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           +       QL+ITVD G +S D ++ A   G+ VIV DHH   +    A A+VNPN+   
Sbjct: 120 DLAAEREPQLLITVDNGISSIDGVKKANALGMQVIVTDHHLPGAVLPDAAAIVNPNQPGC 179

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIG 258
                +L   GV F +L  +   LR+DN    N     ++ + LDLVAL TV DVVPL  
Sbjct: 180 TFVTKNLAGVGVAFYLLSALRGQLRRDNWFDENTIAEPNMATWLDLVALGTVADVVPLDQ 239

Query: 259 LNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
           +NRA V +GLM  R  Q  PG+KAL+     +   + A +LG+ +GP +NA GR+ + +L
Sbjct: 240 INRALVHQGLMRIRAGQCRPGIKALLTIAGKNPQRLVATDLGFALGPRLNAAGRLDDISL 299

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVE 374
           G + L++ D Q     A +LD LNQ+R+++E  M  +A   V      ++      + + 
Sbjct: 300 GIQCLLTSDPQLAMDTARELDELNQDRKVIEQDMQREALKIVEQIPLSLEGEVPPALCLF 359

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432
              WH G+VGLLA+R+KEK+ RP  A +  ++G+  GS RSI G  I   +        G
Sbjct: 360 QAEWHQGVVGLLASRIKEKYHRPVIAFARGDNGQLKGSSRSIPGLHIRDALDAVASQNPG 419

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGL+++        + FQ+    ++ A         DG L    +++  
Sbjct: 420 LISKFGGHAMAAGLSLDEDKLPAFKEAFQRQVAQLLSADDLQAKIATDGELIQQQLSMQT 479

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF--ESQDSET-----LQAIA 545
            ++L  +GP+G   P P F     ++   R+V   HL++     S+  +      +  I 
Sbjct: 480 AELLRDSGPWGQLFPEPCFEGE-FEVLQQRIVGEKHLKLVLAPVSETGQKQPYAGIDGIW 538

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           F        E    S  + +     L +N +RG +  QL +    P+
Sbjct: 539 FNADT----EVWPSSHHRLVRCVYRLDINEYRGQQSLQLMIQFLEPL 581


>gi|325123848|gb|ADY83371.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 566

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/559 (30%), Positives = 261/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   + A   I QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAP-QLKGLETAVALIDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ V++ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVVITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  + NK      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNKQNKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      S + A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RAGILALLDIAGREASSLRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMESAYPIAR 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E  M +QA + + + Q         +++  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDVPPALILFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF              +   +       DG L ASA+ +  +D +E  GP+G   P P 
Sbjct: 433 ENFEAF-KTVFVGCIATMDESLFQATLWTDGELPASALQLDTLDWIEQLGPWGQKFPFPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVVDYRWLKETHLKLKLAL-DQYSFDAIAFNAV----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNAFNGNVNLQLRIVHL 564


>gi|300812583|ref|ZP_07093000.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496456|gb|EFK31561.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 758

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 276/574 (48%), Gaps = 32/574 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W           A  + ++  +  + A++   R +  +   D+   +    + DP ++ 
Sbjct: 2   KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QA+   EKI I+GDYD DG  + A+M   L+    + + +IPDR  DGYG
Sbjct: 59  DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEILTIMGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+    +  + +G +LIITVD G T  + + YA + G+DVIV DHH  K E+  AYALV+
Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +                   L+L  + T+ D+V +
Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +      PGL+ALI    ++   I  E++G+ I P +NA GR+ +++
Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L  RLL+++   E + LA +++ LN  R+ +  A ++ AEA++  +    Q+ + + +  
Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++GL+A ++ EK+ +P+  ++  E G   GSGRS +GF++   +    E   + 
Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  A GL+    N  +L   F +             V + DG ++   V++  +  
Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L  AGP+G  NP PVF     ++ + R +       +F       ++A+ F      L +
Sbjct: 463 LAQAGPFGTDNPQPVFLLDKPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++    +   +   L  N ++G    Q R++D 
Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544


>gi|325685997|gb|EGD28058.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 758

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/574 (27%), Positives = 275/574 (47%), Gaps = 32/574 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W           A  + ++  +  + A++   R +  +   D+   +    + DP ++ 
Sbjct: 2   KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QA+   EKI I+GDYD DG  + A+M   L+    + + +IPDR  DGYG
Sbjct: 59  DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+    +  + +G +LIITVD G T  + + YA + G+DVIV DHH  K E+  AYALV+
Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +                   L+L  +  + D+V +
Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGIIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +      PGL+ALI    ++   I  E++G+ I P +NA GR+ +++
Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L  RLL+++   E + LA +++ LN  R+ +  A ++ AEA++  +    Q+ + + +  
Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WH G++GL+A ++ EK+ +P+  ++  E G   GSGRS +GF++   +    E   + 
Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  A GL+    N  +L   F +             V + DG ++   V++  +  
Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L  AGP+G  NP PVF     ++ + R +       +F       ++A+ F      L +
Sbjct: 463 LAQAGPFGTDNPQPVFLLDKPQISNFRPMRKG---CSFMVG---PVRAVDF---DHSLNQ 513

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++    +   +   L  N ++G    Q R++D 
Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544


>gi|242373936|ref|ZP_04819510.1| recombination protein RecJ [Staphylococcus epidermidis M23864:W1]
 gi|242348290|gb|EES39892.1| recombination protein RecJ [Staphylococcus epidermidis M23864:W1]
          Length = 762

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/579 (27%), Positives = 284/579 (49%), Gaps = 30/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           + W      E I     + ++  +  IV +VL ++N+  +   +D L   I     DP  
Sbjct: 11  YNWDLAEPTEYI--TEELAKELKLSPIVKKVLESKNLVQEEMIQDVLQDKIIN--HDPWA 66

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L+D  KA  RI  AI  SE+I+++GDYD DG  S  +++  LS        YIP+R  +G
Sbjct: 67  LSDMQKAVDRINLAIDKSERILVYGDYDADGVTSTTILVNTLSQLGAQVGWYIPNRFSEG 126

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN    +    EG  LIITVD G   ++ ++   + G+DVIV DHH++      AYA+
Sbjct: 127 YGPNALAFQNAYEEGTSLIITVDNGIQGHEEIKMVQDLGVDVIVTDHHEIGRTLPEAYAI 186

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   +      +LC AGV + +   +     Q             L L A+ T+ D+V
Sbjct: 187 VHPMHPEFSYPFQYLCGAGVAYKLAQALISHPPQ-----------QFLALAAIGTIADLV 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L   NR+ V +GL +        ++A++++   +  I  E +G++IGP +NA GR+ ++
Sbjct: 236 SLTDENRSIVKQGLNILNNNAPVSIQAILKQAGYNDNINEETIGFIIGPRLNAVGRLEDA 295

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +L + LL+S++ +E E LA +++  NQ R+ + S + E+A A    Q    Q    +++ 
Sbjct: 296 SLAAELLMSEEIEEAEFLAEQVEHFNQERKDIVSEITEEALALAEEQV--QQGHLFLLLA 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + WH G++G++A+++ E +  P+  ++ + E     GS RSI+   +         + +
Sbjct: 354 KENWHEGVLGIVASKVVETYALPTLILNIDLEQNHAKGSARSIDQVSM--FEILNAHQDL 411

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH MAAG+T++  N   L      +   +       P   +D +L+   +++  I
Sbjct: 412 ISKFGGHHMAAGMTMDIENIDELRKGLNDWMRQLAETTSLEPRKHVDVLLDEREISVKNI 471

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             ++   P+G    +P F   +  +QSI+ +     HL+++        + A+ +     
Sbjct: 472 RDIQRLRPFGTDFNSPTFELKDLNVQSIKAIGQDGKHLKLSL---GENQIAALYW--SNG 526

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            L   L    G+ +++ G L +N W G++  QL + D +
Sbjct: 527 HLANELEI--GQPVNLIGQLQINEWNGNQSPQLIIQDIA 563


>gi|260101351|ref|ZP_05751588.1| recombination protein J [Lactobacillus helveticus DSM 20075]
 gi|260084859|gb|EEW68979.1| recombination protein J [Lactobacillus helveticus DSM 20075]
          Length = 757

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/579 (27%), Positives = 277/579 (47%), Gaps = 34/579 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E    A  + +K+ +  I AR+   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQQRTAEE---LAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 59  DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  + ++YA   G+D I+ DHH  +  +  AYA+V+
Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ-----------DPVPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLDVLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++    V       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  ++G+  GSGRS+ GF++   ++   +E +L 
Sbjct: 346 PDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSLSGFNLFDALNPL-KESLLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L + F+   H              D  L    ++   +  
Sbjct: 405 KFGGHDFACGLSMEEDKVNDLREKFEADFHVDGGLETKE----YDMELPMHDLSPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI-AFRVYGTP 552
           +   GP+G G+P P+F+  +  +     +     H+++    +D     AI  F      
Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLIANKKDGNL--AIVGFN----- 513

Query: 553 LGEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590
             ++L  +    +      L +N +R     Q  +   +
Sbjct: 514 -KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGIA 551


>gi|169634753|ref|YP_001708489.1| ssDNA exonuclease, 5'--> 3' specific, Mg dependent [Acinetobacter
           baumannii SDF]
 gi|184159832|ref|YP_001848171.1| single-stranded DNA-specific exonuclease [Acinetobacter baumannii
           ACICU]
 gi|239503843|ref|ZP_04663153.1| single-stranded DNA-specific exonuclease [Acinetobacter baumannii
           AB900]
 gi|169153545|emb|CAP02713.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter
           baumannii]
 gi|183211426|gb|ACC58824.1| Single-stranded DNA-specific exonuclease [Acinetobacter baumannii
           ACICU]
 gi|322509744|gb|ADX05198.1| SsDNA exonuclease [Acinetobacter baumannii 1656-2]
          Length = 566

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/559 (31%), Positives = 261/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   D A   + QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + I A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN +RR +E  M +QA + + +     Q   + +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    I       DG L  SA+ +  ++ +E  GP+G   P P 
Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEGY-FKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564


>gi|320115852|ref|YP_004186011.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319928943|gb|ADV79628.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 815

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/576 (30%), Positives = 295/576 (51%), Gaps = 23/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  + + + +P I+A +L  R +++   K FLNP ++ L   P +L
Sbjct: 9   YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I + + I I+GDYDVDG  + +++   L       + YIP+R+V+GY
Sbjct: 66  RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+  D       L   GV F +   +              +   LLD+V++ T+ D+VP
Sbjct: 186 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKA+I+     +  I   ++G+++ P +NA GR+  +
Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLRSA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS D +E+E +A  L+  N NR+ +E+ +L++A  K+  +  D+ +  VIV+ 
Sbjct: 295 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ K + +   +  L
Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  +    ++I +  
Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  +  +N    +     +D    + + F        
Sbjct: 471 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G  + V G + +N W G +   + V D  
Sbjct: 531 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 562


>gi|167037439|ref|YP_001665017.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856273|gb|ABY94681.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 811

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/576 (30%), Positives = 295/576 (51%), Gaps = 23/576 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  + + + +P I+A +L  R +++   K FLNP ++ L   P +L
Sbjct: 5   YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 61

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I + + I I+GDYDVDG  + +++   L       + YIP+R+V+GY
Sbjct: 62  RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 121

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 122 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 181

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+  D       L   GV F +   +              +   LLD+V++ T+ D+VP
Sbjct: 182 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 230

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKA+I+     +  I   ++G+++ P +NA GR+  +
Sbjct: 231 LLGENRIIVKEGLKRLNETQNIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLRSA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS D +E+E +A  L+  N NR+ +E+ +L++A  K+  +  D+ +  VIV+ 
Sbjct: 291 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 349

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ K + +   +  L
Sbjct: 350 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  +    ++I +  
Sbjct: 407 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 466

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  +  +N    +     +D    + + F        
Sbjct: 467 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 526

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G  + V G + +N W G +   + V D  
Sbjct: 527 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 558


>gi|332872828|ref|ZP_08440793.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii 6014059]
 gi|323519759|gb|ADX94140.1| single-stranded DNA-specific exonuclease [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738989|gb|EGJ69851.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           baumannii 6014059]
          Length = 566

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/559 (31%), Positives = 261/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   D A   + QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + I A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN +RR +E  M +QA + + +     Q   + +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    I       DG L  SA+ +  ++ +E  GP+G   P P 
Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIERLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEGY-FKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564


>gi|19745988|ref|NP_607124.1| single-strand DNA-specific exonuclease [Streptococcus pyogenes
           MGAS8232]
 gi|19748150|gb|AAL97623.1| putative single-strand DNA-specific exonuclease [Streptococcus
           pyogenes MGAS8232]
          Length = 736

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++  R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  K+  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKSVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL + +     GL+ L+    I      E+ +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEYFNEDAIGFQIAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V
Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +
Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA AAG+T+   N   L DF  +F               ID  L+   +++
Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            ++  L+   PYG  +  PVF   +  +   R +     HL+    SQ   +   +AF  
Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIWVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            G+ L EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559


>gi|291520599|emb|CBK75820.1| single-stranded-DNA-specific exonuclease RecJ [Butyrivibrio
           fibrisolvens 16/4]
          Length = 588

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/602 (26%), Positives = 282/602 (46%), Gaps = 44/602 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           +W+             ++ K  +  ++ R++VNR +S  +  +++L+P++    PDP + 
Sbjct: 3   KWILQRKAADYA---GLSAKLNVDPVLVRLMVNRGLSTYEEMEEYLHPTLNNF-PDPHLF 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A   +++AI +  +I + GDYDVDG  S  ++   +     + +  +P R+VDGY
Sbjct: 59  ADMDLACELLMEAIDDGVRIRVVGDYDVDGIMSTYILTSAIREAGGDVDYAVPHRMVDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G NP +++   ++G   IIT D G  +  A+  A   G+  +V DHH+V           
Sbjct: 119 GINPDMVQAACDDGVGFIITCDNGIAAAPAIDLAKELGMTFVVTDHHEVPFELSEDGETK 178

Query: 186 -SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
             +   A A+V+P R D       +C A V + +  +++  L  + +          L  
Sbjct: 179 IQKLPAADAVVDPKRDDCNYPFKGICGAQVAWKLAEVLFEFLGLEKEES-----DKFLQF 233

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303
            A+ATVCDV+ L G NRA V +G+       N G+ AL+ R  +   P++  +LG++IGP
Sbjct: 234 AAIATVCDVMELKGENRATVYQGIRAIEATENVGISALLARNELKGKPLSCYHLGFIIGP 293

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+  +     LL+  D  +   +A +L  LN  R+ M    +++A   +  +  
Sbjct: 294 CLNASGRLDTAGRAIELLMEPDQAKALAMANELVELNSQRKNMTQIGIDKARDMI--ENS 351

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           D++  +V+VV     H  + G++A R++E + +P   I+  EDG   GSGRSI  +++  
Sbjct: 352 DLKNDNVLVVYIPELHESLAGIVAGRIREAYNKPVLVITDAEDG-AKGSGRSIPAYNM-- 408

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
                  + +  K GGH MAAG+++       L     +     +       V KID  +
Sbjct: 409 FEELTAVKDVFTKFGGHPMAAGVSLPTEKIDELRTRLNERC--TLTEDDMQEVIKIDCDM 466

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETL 541
             S +   L+D L+   P+G GN  P+FA  N  +     +     +L++T  ++  E +
Sbjct: 467 PLSYITEGLVDSLDMLAPFGTGNTKPLFALKNVPILKAAYIGKEGQYLRLTVGTEKGECM 526

Query: 542 QAIAFR-------------VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
            A+ FR               GT       QS G  M +     +N +RG++  Q+ V +
Sbjct: 527 TAMLFRNVPEFEDIVNTKYGPGTWDRVCSGQSSGVSMDIIYEPSINEFRGNRSIQIMVEN 586

Query: 589 AS 590
             
Sbjct: 587 FK 588


>gi|297621894|ref|YP_003710031.1| single-stranded-DNA-specific exonuclease RecJ [Waddlia chondrophila
           WSU 86-1044]
 gi|297377195|gb|ADI39025.1| single-stranded-DNA-specific exonuclease RecJ [Waddlia chondrophila
           WSU 86-1044]
          Length = 587

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/586 (28%), Positives = 268/586 (45%), Gaps = 20/586 (3%)

Query: 18  WVSLLGQE-------GINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLM 69
           W                     I ++  I  + A++ V+R+ +  D    +L   +  L 
Sbjct: 4   WNFEPDNPMWVYPKMDKRWQDDIIKEFKIHPVTAQLFVSRDFTTVDQIHQYLYAKLPDLH 63

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
            DP +L   DKA  RIV+AI N E I+I+GD DVDG    AL+  +L     N   YI  
Sbjct: 64  -DPSLLQGMDKAVERIVKAIENEENILIYGDNDVDGMTGTALLTDYLRKVGANVYFYIST 122

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
                       +E       +L+ITVDCG T+   +     +GIDVI+ DHH+   +  
Sbjct: 123 PGTLRQNLIIEAIEFATKNQCKLLITVDCGVTAATEIAKVVEKGIDVIITDHHEPTDQIP 182

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALA 248
              A +NP  L++      L   GV F ++  +   L +  K+     DL   LDLVAL 
Sbjct: 183 HCIATLNPKLLNNSYPNRDLTGVGVTFKLVHALTNYLVKQGKIDSKKIDLKRYLDLVALG 242

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307
           TV D+  L+G NR  V  GL   +R    GL  LI   ++    ++   +   I P +N+
Sbjct: 243 TVADMGQLLGENRILVRYGLEQLKRTKRIGLAKLISVCDMEPKQVSTFTIASKIAPRLNS 302

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRI +   G  LL+  ++++ E +A +LD+ N  R+ +E  M    + ++++   DI Q
Sbjct: 303 LGRIADPVKGVELLLIRNAKQAETMAQELDLNNLERQRIEKTMTADVD-QIISLHPDILQ 361

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
              +V+  D+WHPG++ +L  R+ + + RP+  I+  E+G G GS RSI  F +  ++  
Sbjct: 362 KKAVVIHSDKWHPGVIAILCTRISKHYNRPTVMIA-IENGIGKGSLRSIHEFPLLSVLRD 420

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                +LV  GGH  AAGLT++  N       F + A+  +          +D  +  S 
Sbjct: 421 C--SDLLVNYGGHDYAAGLTIKEENIPEFKRRFIEAANRKLSTHDVVTKLNLDSEVQFSD 478

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +   L++ ++   P+G  NP P+      +    ++V   HL++  E  D   L+ IA  
Sbjct: 479 LTFDLMESVKLLEPFGNENPQPLMYTRAKQAWPPKIVGKTHLKLYLEQGD-RMLEGIA-- 535

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            YG      L++ +   + V     VN + G    QL + D   +E
Sbjct: 536 -YGKAHLSPLLRKKNIILEVAFTPQVNNFLG-PSIQLLIRDFRIIE 579


>gi|330718652|ref|ZP_08313252.1| single-stranded DNA-specific exonuclease [Leuconostoc fallax KCTC
           3537]
          Length = 658

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/582 (28%), Positives = 289/582 (49%), Gaps = 22/582 (3%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           +   W  L  +        +  +  I  + A ++  +  +  + A  +L+PSI  L  DP
Sbjct: 2   TQNNWKILP-KPNPKVVDELASRLDISRLTATIVAQKGYTDAESAYQYLSPSIEQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L D DKA  R+  A +  EKI+I+GDYD+DG  S A+M   L+    + + YIP+R  
Sbjct: 60  MLLHDMDKAVERLQDAAFGGEKIVIYGDYDLDGLTSTAVMYEALAILGADVSYYIPNRFN 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN ++ +K I +GAQLI+TVD G T YDA+  A   G+DVI+ DHH++      AY
Sbjct: 120 DGYGPNKAVYQKLIQDGAQLIVTVDNGVTGYDAVNCAKALGVDVIITDHHELAPTLPEAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +       L   GV F V   +         +        +LDLVA+  + D
Sbjct: 180 AIVHPRHPEGHYPFNDLSGVGVAFKVAQALLSDGEAITDISQLPT--EMLDLVAMGEIAD 237

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310
           +V L   NR  V  GL        PG++ L++      + P+ +E + + I P +NA GR
Sbjct: 238 MVSLTDENRVLVSLGLKQMNDSPRPGIQYLLKNAGQAKNQPVISETVSFKIAPRLNAVGR 297

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G+++LG  LL+S D  E + LA +++ +N+ R+ +   +  +A++         Q   +
Sbjct: 298 MGDASLGLDLLLSQDLDESKALAKEVEAINKQRQEVVEKVFSEAKSLA--LSPQYQNDKI 355

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +++ G+ WH GI+G++A+R+ E   +P+  +S ++D    GSGRS   FD+ + ++    
Sbjct: 356 LLLSGENWHEGILGIVASRIVELTKKPTIILSQKDD-ILKGSGRSYGAFDLYQFMAL--F 412

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
                  GGHA A GL++   +   L +  +          + T   +++ +L +  +N 
Sbjct: 413 RDTYTTFGGHASAIGLSLSVTSLATLREKIK---AKNSTITLVTKPIEVNLLLPSDTINN 469

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           +  + L    P+G  N  PVF F   K+ +   +     H++++  +  S+ ++A+ F  
Sbjct: 470 STYESLTLLEPFGTDNQRPVFVFEEPKIMNATTMGNLKQHVKLSLANLQSD-VEAVGFNH 528

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    + ++   +     +  NY+RG +  QL +LD  
Sbjct: 529 PDW----VPVVTQSTNISFVATIGTNYFRGRQTLQLMMLDIK 566


>gi|315038562|ref|YP_004032130.1| single-stranded-DNA-specific exonuclease [Lactobacillus amylovorus
           GRL 1112]
 gi|312276695|gb|ADQ59335.1| single-stranded-DNA-specific exonuclease [Lactobacillus amylovorus
           GRL 1112]
          Length = 757

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/578 (28%), Positives = 272/578 (47%), Gaps = 32/578 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E       + +K+ +  I A++   R +  D   DF   +    + DP ++ 
Sbjct: 2   KWQQRTAEELDPS---LIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 59  DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN       + +G +LIITVD G T  D ++YA   G+D IV DHH  + ++  AYA+V+
Sbjct: 119 PNIDRYHDIVADGTKLIITVDNGVTGTDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTLGSINETDIGFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++  A +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDVEAQKIADQIEELNNQRKELTTEVYDKCMALIRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRSI GF++   ++   EE +  
Sbjct: 346 PDFHEGVLGLVANKIVEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEE-LFT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++     G L +  +K  H      I       D  L    ++   +  
Sbjct: 405 KFGGHDFACGLSMTEDKIGALREKLEKGFHVEGGLEIKE----YDMELPLQGLSPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+  P+F+  N  +     +     H++     +   +L  I F       
Sbjct: 461 INQVGPFGTGDAQPIFSISNPTITQFFKIGKEKNHVKFNVAKKGG-SLAVIGFN------ 513

Query: 554 GEFLMQSRGKRM-HVTGHLCVNYWRGSKRCQLRVLDAS 590
            +FL  +    +  V   L +N +      Q  +    
Sbjct: 514 KDFLNNNLLPFIARVFVQLSLNTYHNKISLQGIIEGIE 551


>gi|119897796|ref|YP_933009.1| single-stranded-DNA-specific exonuclease [Azoarcus sp. BH72]
 gi|119670209|emb|CAL94122.1| single-stranded-DNA-specific exonuclease [Azoarcus sp. BH72]
          Length = 563

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/580 (28%), Positives = 267/580 (46%), Gaps = 25/580 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
                      A A+     I  ++AR+   R ++       L+ S++ L+P P  LT  
Sbjct: 3   QIHPRAVPQRAAAALM-DAGIHPLLARLYAARGIARSSD---LDTSLKALLP-PQALTGT 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
            +AA+ +  AI    +++I  DYD DGA + A+ +R L     + +  +PDR+  GYG  
Sbjct: 58  AEAAQLLADAIEAGARMVIVADYDCDGATACAVGVRALRAFGADVHYLVPDRVTLGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P+++E        ++ITVD G  S + +  A   G+  I+ DHH        A  +VNPN
Sbjct: 118 PAMVEIAARLEPDVLITVDNGIASVEGIAAARAHGMATIITDHHLPGDVLPDADVIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPL 256
           +         L   G +F  ++ +   LR+          +L  LLDLVAL TV DVV L
Sbjct: 178 QPGCDFPSKALAGVGAMFYTMLALRAELRERGAFAGGQEPNLADLLDLVALGTVADVVKL 237

Query: 257 IGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGES 314
              NR  V +GL   R  +  PG++AL              +LG+ +GP +NA GR+ + 
Sbjct: 238 DHNNRILVAQGLQRMRAGRMQPGIRALFAAAGREPARANTFDLGFAVGPRLNAAGRLSDM 297

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +LG   LI+DD      +A +LD LN+ RR +E+ M E+A  ++  +  D   ++ I + 
Sbjct: 298 SLGIECLITDDPGRALNIAQELDKLNRERRSIEAGMQEEAALRL--EGFDPGASASIALF 355

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432
              WH G++G++A R+KEK  RP+ A +   DG+  GSGRSI G  +   +         
Sbjct: 356 EPDWHQGVIGIVAGRIKEKLHRPTIAFARGNDGELKGSGRSIAGLHLRDALDLVTKQHPD 415

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++V+ GGHAMAAGLT+   +F R    F++    +V         + DG L A  +++  
Sbjct: 416 LIVRFGGHAMAAGLTIREADFDRFSSVFEEVVAGLVEPAALQRRIETDGALEAGYLSLES 475

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
             +LE    +G G P PVF     +++  R++   HL++    +      AI F      
Sbjct: 476 ARLLEK-EIWGQGFPAPVFD-DVFRVERQRILKDRHLKLEL-GKQGARYDAIQFNFADGA 532

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                       +     L +N + G    QL +      
Sbjct: 533 ---------PDTIRAAYRLSINEYNGVSNVQLMLEHFEAA 563


>gi|86158958|ref|YP_465743.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775469|gb|ABC82306.1| exonuclease RecJ [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 564

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/560 (34%), Positives = 284/560 (50%), Gaps = 23/560 (4%)

Query: 40  PDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
             + ARVL  R       A+ FL   +  L PDP  +   + A  RI +A+   E+I  +
Sbjct: 20  HPLAARVLAARGHADPAEAEAFLAARLADL-PDPFRMKGMEAAVERIARALEGGERIACY 78

Query: 99  GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           GDYDVDG  S AL+  FL     +   Y P R+V+GYG N   +     +G +L++T+DC
Sbjct: 79  GDYDVDGVTSTALLCGFLRAAGADVVTYTPHRLVEGYGLNGDAVRSLAAQGVRLLVTLDC 138

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G TS D ++ A   G+D +V+DHH V  E   A A++NP++         L A GV F +
Sbjct: 139 GITSVDEVRVAAGLGVDTVVVDHHTVPVELPAAAAILNPHQPGCAYPSKDLAAVGVTFAL 198

Query: 219 LVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
            + + R LR+  +        +L  +LDLVAL TV DVVPL+G NR  V  GL       
Sbjct: 199 AMALRRRLRERGRFGPARPEPNLKEVLDLVALGTVADVVPLVGANRILVRWGLEQLATSR 258

Query: 276 NPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
            PG++AL         +P+TA  +G+ + P INA GR+ ++  G RLL+S D+   + LA
Sbjct: 259 RPGVRALKRVAGIADGTPVTAGQVGFRLAPRINAAGRLDDAGRGVRLLLSGDAAAAQALA 318

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +LD  NQ R+ +E  +LEQA A    +     +  V  +  D WH G+VG++A+R+ E+
Sbjct: 319 DELDRENQARQEIERRILEQALADAGARVAAGARGLV--LARDGWHAGVVGIVASRVVER 376

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453
           F RP+  ++  EDG G GSGRSIEGF +   ++     G L + GGH  AAG+TVER   
Sbjct: 377 FHRPAVLVA-LEDGAGKGSGRSIEGFHLYDALAAC--SGHLARFGGHRHAAGVTVERAQV 433

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                 F+  A   +      P  +IDG +  + V     + L   GP+GAG+P PVFA 
Sbjct: 434 EPFRAAFEAHAAATIADEDLVPRCRIDGWVGDAEVTEDAAEGLARLGPFGAGHPEPVFAL 493

Query: 514 PNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
                ++  V    AHL++         L AI F +           + G  +     + 
Sbjct: 494 RGAAARARTVGAGGAHLKLAL----GRGLDAIGFGMGDR------APACGGPVDAAFTIG 543

Query: 573 VNYWRGSKRCQLRVLDASPV 592
            + W G++R QL++ D  P 
Sbjct: 544 FDEWDGTRRLQLKLKDLRPA 563


>gi|323466353|gb|ADX70040.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           helveticus H10]
          Length = 757

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/579 (27%), Positives = 276/579 (47%), Gaps = 34/579 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +E    A  + +K+ +  I AR+   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQQRTAEE---LAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 59  DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  + ++YA   G+D I+ DHH  +  +  AYA+V+
Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ-----------DPVPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL V  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLDVLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + ++    V       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  ++G+  GSGRS  GF++   ++   +E +L 
Sbjct: 346 PDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSFIGFNLFDALNPL-KESLLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L   F+   H              D  L    ++   +  
Sbjct: 405 KFGGHDFACGLSMEEDKVNDLRKKFEADFHVDGGLETKE----YDMELPMHDLSPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI-AFRVYGTP 552
           +   GP+G G+P P+F+  +  +     +     H+++T   +D     AI  F      
Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLTANKKDGNL--AIVGFN----- 513

Query: 553 LGEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590
             ++L  +    +      L +N +R     Q  +   +
Sbjct: 514 -KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGIA 551


>gi|239637559|ref|ZP_04678531.1| single-strand DNA-specific exonuclease [Staphylococcus warneri
           L37603]
 gi|239596777|gb|EEQ79302.1| single-strand DNA-specific exonuclease [Staphylococcus warneri
           L37603]
          Length = 760

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/581 (27%), Positives = 285/581 (49%), Gaps = 30/581 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W      E I+   +I ++  +  I+ ++L ++ +   +  +  LN     +  D 
Sbjct: 4   SKYNWNLNNPTEYISD--SIAKRLKLSPIIKKILESKQIIEEEDIQQTLNG--IDINHDI 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D DKA  RI QAI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  SLLSDIDKAIERINQAIDKNERILVYGDYDADGVTSTTILVHTLQKLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  ++ A   G+DVIV DHH++      AY
Sbjct: 120 EGYGPNEMAFQNAYDEGISLIITVDNGIQGHAEIKMAQELGVDVIVTDHHEIGRTLPEAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   +   +                   A+ T+ D
Sbjct: 180 AIVHPMHPEFDYPFKYLCGAGVAYKLAQALLENVPN-----------YFKAYAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR+ V  GL V        +KAL+++   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRSIVQHGLKVMNDSCPVAVKALLKQAGYNDDITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD   E E LA +++  NQ R+ + + + E+A    + +    Q    ++
Sbjct: 289 DASLAAELLMSDSEDEAEFLAEQVEHFNQERKDIVAHITEEAL--AIAKDYVSQGHQFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E F  P+  ++   E     GS RSIE   +         +
Sbjct: 347 LAKEDWHEGVLGIVASKIVETFSLPTLILNIDHEQNHAKGSARSIEQVSM--FEILNAHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T++  N   L +   ++   +       P  K+D +L+ S + I 
Sbjct: 405 DLISKFGGHHMAAGMTMDIDNVEALRNGLNEWMAKLSETTSLEPSKKVDVLLDESDITIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            I  ++   P+G    +P+F   N  +QS++ +     HL+MT    +   L A+ +   
Sbjct: 465 NIKDIQKLSPFGTDFNSPLFEIQNMTIQSLKAIGKEQNHLKMTLGDSN---LPALFW--- 518

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       G+ +++ G+L +N W G++  Q  V D +
Sbjct: 519 -QNGAYATQLETGQPVNLIGNLQINEWNGNQTPQFIVQDIA 558


>gi|302385083|ref|YP_003820905.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           saccharolyticum WM1]
 gi|302195711|gb|ADL03282.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           saccharolyticum WM1]
          Length = 572

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/580 (27%), Positives = 272/580 (46%), Gaps = 29/580 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W+    +        + + H I  + AR++ NR+V   +  + +L   ++ L   P +L
Sbjct: 5   KWMLQTKRADF---EEMARCHHISPVTARIIRNRDVMGREAVRKYLWGELKDLY-SPHLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+    + +     + I I GDYD+DG  S  L+ + L+      +  IPDR+ DGY
Sbjct: 61  KDMDRTVGILKEKTEQLKPIRIVGDYDIDGVCSTYLLYQALTKVGAVVDYEIPDRLKDGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-----IP 190
           G N S++     +G   I+T D G  + + ++ A   G+ V++ DHH +  E       P
Sbjct: 121 GINESIIRAAAGDGIDTILTCDNGIAAVEQIRLAKELGLTVLITDHHDIMKENGREILPP 180

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A+VNP + D       +C   V + ++  +Y               L +++  A+ATV
Sbjct: 181 ADAVVNPKQEDCTYPFPDICGGMVAYKLVQALYEAF-----HVPMEKWLEMVEFAAIATV 235

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309
            DV+ L   NR  V +GL    R  + GL  LIER +     ITA  +G++IGP +NAGG
Sbjct: 236 GDVMKLQDENRIIVKEGLKRMGRTKSLGLLKLIERNDLDKEQITAYQIGFVIGPCLNAGG 295

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+  + L   LL+S + +E + +A +L  LN  R+ M      +A  +V       +   
Sbjct: 296 RLQTAKLALSLLLSRNEEEADQMARELKELNDRRKDMTKQGTSEAVEQVEALYRGDK--- 352

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+VV     H  + G++A RL+E + +P+F ++  E+    GSGRSIE + +    +   
Sbjct: 353 VLVVYLPDCHESLAGIIAGRLREYYQKPAFVLTDGEECV-KGSGRSIEAYHM--FDALVR 409

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
            + +L+K GGH MAAGL++ + +         + A   +          ID  +    +N
Sbjct: 410 VKDLLLKFGGHPMAAGLSLLKDHVDEFRKCLNEQAR--LTEEDFIRKVWIDVPMPLEYIN 467

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFR 547
             LI  LE   P+G GN  P+FA     ++S+RV+      ++ +  +     + A+ F 
Sbjct: 468 EPLIQELELLEPFGQGNEKPLFAQKGLHIRSVRVLGKNRNAVKFSLATDQGTPMDAMLFG 527

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
              + L E       + + V  +  VN + G+K  Q+ + 
Sbjct: 528 DGDSFLKEL---GDSRILDVIYYPSVNEYNGNKTLQVIIR 564


>gi|300361887|ref|ZP_07058064.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri JV-V03]
 gi|300354506|gb|EFJ70377.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri JV-V03]
          Length = 756

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/577 (28%), Positives = 287/577 (49%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      +  +    + + + + DI A++   R ++     DFL  +    + DP ++ 
Sbjct: 2   KWQQR---QASSLDQELIEDYGLTDIQAKLFALRGINTAEKLDFLLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K+  RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+ S  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  A++ V+
Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ LI++  ++   ITA ++G+ I P +NA GR+ +++
Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRTLIKQAGLTMGQITATDVGFNIAPRLNAVGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A K++ LN  R+ + + + E+  A+V  +    Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEEIAAKIEELNNERKELTAEVYEKCLAQVEEKGW--QHRNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E+G+  GSGRS EGF++   +   +++  L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSEGFNLFDALEP-MKDDFLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++      L   F+K         +       D  LN   V    +  
Sbjct: 405 KFGGHDFACGLSLKVDKLEELRSRFEKSFKPSTDLEVK----DFDFELNLREVTPDTLTE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP PVF+     ++S+  +     H++ T E  + + L  + F   G   
Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFTAEKNNGK-LTIVGFN-KGFLN 518

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              L   +   +     L +N W+     Q  +    
Sbjct: 519 QNLLPFIKELYV----TLALNSWKNVSSVQGMLAGIE 551


>gi|90408297|ref|ZP_01216462.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Psychromonas sp. CNPT3]
 gi|90310598|gb|EAS38718.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Psychromonas sp. CNPT3]
          Length = 574

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/559 (31%), Positives = 280/559 (50%), Gaps = 20/559 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              ++ ++ ++R ++       L+ S + L+     L    +A   + QA+ +++KI+I 
Sbjct: 21  CSALLQKLYIDRGITS---VSELDLSTKTLLSA-SSLKGISEACSLLYQALLSAKKIVIV 76

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L      N +  IP+R   GYG  P  ++  I +GAQL+ITVD
Sbjct: 77  GDFDADGATSTALSLLCLRELGFMNVDYLIPNRFDYGYGLTPESVDLAIAKGAQLLITVD 136

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G +S   + YA  +G+ V++ DHH        A  +V+PN+ D L    +L   GV F 
Sbjct: 137 NGISSIKGVAYAKEKGLQVLITDHHLPAEVLPNADVIVDPNQKDCLFPSKNLAGVGVAFY 196

Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           ++  +   + Q +           L   LD+VAL TV DVV L   NR  V +GLM  R 
Sbjct: 197 IMSALRSYMIQKDHFSDKGIRPPTLTKFLDIVALGTVADVVILDANNRTLVEQGLMRIRA 256

Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
                G+ ALI+    +   + A +LG+ +GP +NA GR+ E   G  LL+ +D+ + ++
Sbjct: 257 GACRLGISALIKVAKRAQHSLVASDLGFSLGPRLNAAGRLDEMRHGVELLLCEDAVQADL 316

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARL 390
           LA +LD LN  RR +E  M E+A   +     D +     I +  + WH G++GL+A+R+
Sbjct: 317 LAQELDALNHTRREIEQGMQEEALQALENLALDEKNMPYAICLFDESWHQGVIGLVASRI 376

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448
           KE++ RP+F  +   D +   S RSI G  I  ++        G+++K GGHAMAAGL++
Sbjct: 377 KERYYRPTFVFAKANDTEIKASARSIAGIHIRDILDLLDKKMPGMILKFGGHAMAAGLSI 436

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  +F R      +   + V A I   V   DG L    + +     L +AGP+G G P 
Sbjct: 437 KATDFERFKQGLNEVLASQVDADILQNVLLSDGPLQGKDLTLEQAYELRNAGPWGQGFPA 496

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           P+F     K+   R+V   HL+M  E +    + AIAF V      +     R +++   
Sbjct: 497 PLFDAY-FKIIEQRLVGEKHLKMVLECE-GTVVDAIAFNVD----LDIWPDPRIRQVFCA 550

Query: 569 GHLCVNYWRGSKRCQLRVL 587
             L VN +RG+   QL + 
Sbjct: 551 YRLDVNEFRGASNVQLLIE 569


>gi|153873193|ref|ZP_02001854.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. PS]
 gi|152070341|gb|EDN68146.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. PS]
          Length = 584

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/571 (30%), Positives = 269/571 (47%), Gaps = 30/571 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +  ++ RVL  RN++       L+  ++ L+P   +L + +KA   + +A+    +I+I 
Sbjct: 20  LHPVIQRVLAARNIND---VSELDYGLQNLLPYQSLL-NIEKAVNLLYEALTKQSRILIV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK----------FIN 147
            D+D DGA S A  +R L           +PDR   GYG  P ++E              
Sbjct: 76  ADFDADGATSCATAIRALQQMGAQKVGFLVPDRKKHGYGLTPEIVELAQKESILAYTPPG 135

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
           EG  L++TVD G +S   ++ A  +G+ V+V DHH    +   A A++NP +  D     
Sbjct: 136 EGPDLLMTVDNGISSITGVEVAQQKGMRVLVTDHHVAGEQLPKADAIINPKQKGDQFPSK 195

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAY 263
           +LC  GV+F V++ +   LR             ++  LLDLVAL TV DVV L   NR  
Sbjct: 196 NLCGVGVIFYVMMALRVHLRDKGWFTQQNIPEPNIAYLLDLVALGTVADVVELDYNNRIL 255

Query: 264 VVKGLMVARRQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R     PG++AL++        + A +LG+ +GP +NA GR+ + + G   L
Sbjct: 256 VEQGLRRIRANYCCPGIRALMQVSKRDQSTLIASDLGFYVGPRLNAAGRMDDMSYGINCL 315

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           +SDD       A  L + NQ RR  E+ M  +A   + T  D  +    I +  ++WH G
Sbjct: 316 LSDDDISARQHAELLQMFNQERRFEETKMQTEALEMITTLGDIDKLPLGICLYEEKWHQG 375

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGG 439
           +VG+LA+R+K++  RP    + +++    GSGRSIEG  I  ++        G++   GG
Sbjct: 376 VVGILASRIKDRLHRPVIIFTHDKEDTIRGSGRSIEGVHIRDVIDTISTQNPGMISHFGG 435

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGLT++R  F      F       + A         DG L+A   N+AL + L + 
Sbjct: 436 HAMAAGLTIQREQFKHFQQAFDTEIRQYLSADELQGTLVSDGALSAEDFNLALAEQLRTI 495

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLM 558
            P+G     PVF     ++   R++   HL+M     +   ++  IAF +          
Sbjct: 496 TPWGQNFLEPVFDGE-FEVLEHRILKEKHLKMQVRPLEGGPSVDVIAFNIIDGNW----- 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                R+ +   L VN +RG K  QL     
Sbjct: 550 TGEVNRIQLAYRLDVNVYRGFKNLQLMAKHL 580


>gi|75908589|ref|YP_322885.1| exonuclease RecJ [Anabaena variabilis ATCC 29413]
 gi|75702314|gb|ABA21990.1| exonuclease RecJ [Anabaena variabilis ATCC 29413]
          Length = 730

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 289/633 (45%), Gaps = 65/633 (10%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW   L +     A  +     +  IV ++L+NR + + + A+ FL P    L   
Sbjct: 16  LPNQRWQIHLQKTD--LAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSP 73

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
                D   +   + +AI +  KI I GDYD DG  S AL++R L       +  IP R+
Sbjct: 74  LTEFPDLAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRM 133

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++E+F +EG +LI+TVD G ++++ +  A   G++VI+ DHH +  +  PA
Sbjct: 134 HEGYGINKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPA 193

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP  + + S    +   GV +++ V + + L +   +     +  +L L  L T+ 
Sbjct: 194 DAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGL-----IQPMLALFTLGTIA 248

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN------------------------ 287
           D+ PL G+NR +V +GL +  +   PG++ALI+                           
Sbjct: 249 DLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLI 308

Query: 288 --------------------ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
                                   +  E++G+ +GP INA GRIG+      LL +DD  
Sbjct: 309 NNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEG 368

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLL 386
                AM+ +  N +R+ M   + +QA A V       +QQ  V+VV    WH G++G++
Sbjct: 369 LALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNWHHGVIGIV 428

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           A+RL E++G P F  ++E++    GS RSI  F++ + + +     +L K GGH  A G 
Sbjct: 429 ASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCH--DLLGKYGGHKAAGGF 486

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           +    N  +L     +FA+  +      P+ +ID   N + ++  L   L S  P G  N
Sbjct: 487 SFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDN 546

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES---QDSETLQAIAFRVYGTPLGEFLMQSRGK 563
           P+PVF  PN ++   ++V   H+++T            +AIA+R                
Sbjct: 547 PDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYY-------PLPP 599

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
           R+ +   L  N + G+   +L +L     +   
Sbjct: 600 RLDIAYKLRENNFNGNTSLELELLGVRLAQKQL 632


>gi|326201895|ref|ZP_08191765.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           papyrosolvens DSM 2782]
 gi|325987690|gb|EGD48516.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           papyrosolvens DSM 2782]
          Length = 576

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/592 (28%), Positives = 282/592 (47%), Gaps = 34/592 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W+    +        ++++  I +++ R++VNR +  +D A+ ++   ++ L  DP +
Sbjct: 2   QKWILKNPKFDF---KKMSKELGISELLCRIIVNRGIKDLDNARKYIKADLQGL-NDPRL 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D       + + I  ++KI I GDYDVDG  S  ++ + L+ C  N +  IP RI+DG
Sbjct: 58  MKDMVLGVSIVQEKIKLNKKIRIIGDYDVDGVVSTYILYKALARCGANVDYAIPHRILDG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N SL+E  +N+G   IIT D G  + + +Q+A   G+ VIV DHH V      A A+
Sbjct: 118 YGINNSLVENALNDGIDTIITCDNGIAAREQIQFAKESGMTVIVTDHHDVPDIIPEADAI 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  + D       LC AGV F    ++Y  +          +     + VA+ATVCDVV
Sbjct: 178 IDMKQADCRYPFKLLCGAGVAFKFTQVLYEEM-----CIPREEEAEFYEFVAIATVCDVV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L   NR  V KGL       N GL AL+++  IS   I   +LG++IGP INA GR+  
Sbjct: 233 DLTEENRILVRKGLNTIADTKNIGLNALLQKTGISGKSIGVYHLGFIIGPCINASGRLDW 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G +LL+ D+ QE E LA +L  LN  R+ M    +E     +  +  D++   V+VV
Sbjct: 293 AMKGLKLLLIDNQQEAEALAAELYELNNERKSMTVKGVEDTIETI--ENSDLKGDRVLVV 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
                H  I G++A +++EK+  P+F ++  E+    GSGRSIE +++         + +
Sbjct: 351 YKPEIHESIAGIIAGKVREKYNVPTFILTRGENCV-KGSGRSIEEYNM--FEELLKCKEL 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             K GGH MAAG +++      L +         +      P   ID  +  SA+NI   
Sbjct: 408 FTKFGGHPMAAGFSLDADKVDILRERVNSI--TTLTEDDLIPKIYIDAHIPLSAINIRTA 465

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551
           + L    PYG GN  P+FA  N  ++   V       L++  ++ +S  +  + F     
Sbjct: 466 EELSYLEPYGKGNTKPLFAEKNISVRKATVFGNERKVLKLRLQNGNS-FVDCVYFGNIDE 524

Query: 552 ---------PLGEFLMQSRGK----RMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       E      G+    ++ +  ++ +N + G +  Q+ +    
Sbjct: 525 FDTYVSERFGSEELQNIYAGRNSIIKLDMIFNIDINEYNGYRNVQIVLQYYR 576


>gi|237746044|ref|ZP_04576524.1| ssDNA exonuclease [Oxalobacter formigenes HOxBLS]
 gi|229377395|gb|EEO27486.1| ssDNA exonuclease [Oxalobacter formigenes HOxBLS]
          Length = 565

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/565 (29%), Positives = 266/565 (47%), Gaps = 25/565 (4%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +  +  ++AR+   R +S       L+  +  L+P P  L   D+AA  +  AI    KI
Sbjct: 19  RTGVHPVLARIFAARGISDP---AELSTGLSGLIP-PGRLLHIDRAASFLADAIALGRKI 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK-FINEGAQLII 154
            +  DYD DGA + AL +R L      A+  +P+R  +GYG  P+++++        +++
Sbjct: 75  TVVADYDCDGATACALALRGLKLLGAQADYMVPNRFDNGYGLTPAIVDEAKKQHATDVLV 134

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  S + +  A    +DV+V DHH    E      +VNPN+ D       L   GV
Sbjct: 135 TVDNGIASLEGIGRAVELQMDVLVTDHHLPGDELPKNCIVVNPNQPDCTFPSKSLAGVGV 194

Query: 215 VFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           +F VL+ +   +R+           L  LLDLVAL T  DVV L   NR  V +GL   R
Sbjct: 195 MFYVLLALRAEMRRRKVFDEKTQPRLDHLLDLVALGTFADVVRLDANNRILVAQGLRRIR 254

Query: 273 RQ-GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                 G+ AL           ++ +LG+ +GP +NA GR+ +  LG   L++DD     
Sbjct: 255 SGVMQAGVAALFRVSGRDFRKASSFDLGFAVGPRLNAAGRLSDMGLGIECLLTDDESRAF 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A +L+ +N  RR +E+ M  +A  K+       +  + + V  + WH GI+G+LA+R+
Sbjct: 315 QMAEELNRINIERREIEADMRIEAREKIAK--VHPENRATLCVLSEDWHQGIIGILASRI 372

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEK  RP+ A +  +DG+  GSGRSI  F +   +        G++V+ GGHAMAAGLT+
Sbjct: 373 KEKHFRPTMAFATGKDGEIRGSGRSIPEFHLRDALDLIAKRHPGLIVQFGGHAMAAGLTL 432

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
               F    + F+  A   +         + DG L+    ++  I++LE+   +G G P 
Sbjct: 433 RSGGFDAFSEAFEAVAREWLTQTQLERQIETDGSLDDDCFSLDFIELLET-QVWGHGFPP 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           P+F      + + R++   H ++  +  D     AI F                +R+ + 
Sbjct: 492 PLFCDE-FTVINQRILKDRHSRLQLQKND-RYYTAIRFGSTEL---------LPRRVRLA 540

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  N + G    QL V  A  +E
Sbjct: 541 YRLDANEYNGKTSVQLIVEHAEGLE 565


>gi|296120942|ref|YP_003628720.1| single-stranded-DNA-specific exonuclease RecJ [Planctomyces
           limnophilus DSM 3776]
 gi|296013282|gb|ADG66521.1| single-stranded-DNA-specific exonuclease RecJ [Planctomyces
           limnophilus DSM 3776]
          Length = 583

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/588 (28%), Positives = 277/588 (47%), Gaps = 21/588 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W              +  +  I  ++ARVLV R + + +    F +  +  L  DP  
Sbjct: 7   RVWQY--AHVDQESIRRLAAELQISPLLARVLVARKIHTREMGLKFFSRKLSELH-DPEQ 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    +AA RIV+AI +   I I+GDYDVDG  + +L+   +      +  YIP R+ +G
Sbjct: 64  LPGISQAADRIVEAIKHQRLITIYGDYDVDGVTATSLLWHCIRLAGGRSEYYIPARLEEG 123

Query: 135 YGPNPSLME-KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YG N + +E     + +QL+++VDCG TS    + A   G+++I+ DHHQ          
Sbjct: 124 YGLNSTAIETLAAQDPSQLVVSVDCGITSLIEARRARELGLELIITDHHQFAENFPEETI 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVC 251
           LV+P         G LC AGV F +   +   L   +     +   LLS + L A+ TV 
Sbjct: 184 LVHPRLPGSSYPFGELCGAGVAFKLAWAVCARLGDGKKASPRMKEFLLSAIGLAAIGTVA 243

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGG 309
           DVVPL G NR  V  GL     + + GLKALI+       + + A+++G+ +GP INA G
Sbjct: 244 DVVPLTGENRVLVHYGLSTIGEKSSIGLKALIKAAGLHEKTSLAADDIGFSLGPRINAAG 303

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G++ L   LL +D+    + LA  LD LN+ R+ +E  M +QA+  V       ++ +
Sbjct: 304 RLGQARLAVELLTTDNEDRAQKLAAYLDELNKQRQSLERKMFKQAKDLVNDHPAWSEEKA 363

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA 428
           + V+  D WH G++G++A ++ E F RP+  +          GSGRS  GF++ + +   
Sbjct: 364 L-VLTHDEWHAGVIGIVAGKVAESFQRPAILLGPSTSADILQGSGRSFAGFNLHEGLVAC 422

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E   L+  GGH  A G+ + R +          F          +    ID  +    +
Sbjct: 423 REH--LITFGGHHAAVGMKLSRKHLDTFRASLVDFVSQNHSVEPGSAPLPIDAEVTFQEI 480

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQAIA 545
           +   I+ L+   P+G+ NP P+FA    +L +  + +     HL +  +  D +TL+A+A
Sbjct: 481 STRAIEELDLLAPFGSANPRPMFAATRVELAAPPKTMGEGGRHLSLLLKQHD-KTLRAVA 539

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           F        E +       +H+     +N +RG +   L + D +P  
Sbjct: 540 FGQGE--WAEEIAAHSA--IHLAFQPIINEFRGQRNVDLHIKDWAPAT 583


>gi|262280478|ref|ZP_06058262.1| ssDNA exonuclease [Acinetobacter calcoaceticus RUH2202]
 gi|262258256|gb|EEY76990.1| ssDNA exonuclease [Acinetobacter calcoaceticus RUH2202]
          Length = 566

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/559 (31%), Positives = 263/559 (47%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   + A   + QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLETAVALMDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYHPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A    + VI+ DHH    E  PA A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVETAQALDMQVIITDHHLTTKETPPAQAVVNPNQLGCDFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNKQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      S + A++LG++IGP INA GR+    +G   L++++ +    +A 
Sbjct: 253 RVGILALLDIAGREASSLRAQDLGFVIGPRINAAGRMESMRIGIECLLAENMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E  M +QA + + + Q         +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDIPQALVLFEESWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    +       DG L ASA+ +  +D +E  GP+G   P P 
Sbjct: 433 ENFDAFKTVFTGCVAAM-EESLFQATLWTDGELPASALQLDTLDWIEQLGPWGQKFPFPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  T  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVVDYRWLKETHLKLRLAL-DQYTFDAIAFNAA----GRFEFNPMRDEVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 MDRNAFNGNVNLQLRIVHL 564


>gi|312872300|ref|ZP_07732370.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092123|gb|EFQ50497.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 761

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/573 (28%), Positives = 280/573 (48%), Gaps = 30/573 (5%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80
             ++  +    +  K+ +  I A++   R ++ D   DF LN     L  DP ++ D +K
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMEK 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
              RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+  
Sbjct: 63  IVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
             ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  
Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           +        C AGV + +   +           +  ++  LLDL  + T+ D+V + G  
Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319
              V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   
Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H
Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GG
Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A GL++++ +  +L + F+     +  + +       D  LN + + +     +   
Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQIAKV 465

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           GP+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L
Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518

Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
             +    +H+    L +N W    + Q  + D 
Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|228475196|ref|ZP_04059922.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           hominis SK119]
 gi|228270807|gb|EEK12209.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           hominis SK119]
          Length = 757

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 283/581 (48%), Gaps = 30/581 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S ++W+    ++ I+    I ++  +  IV ++L +++++  D     +N + +    D 
Sbjct: 4   SKYKWLYEAPKQNISS--EIIKEFNLSPIVRKILESKSITQYDEINTLINGTNKK--HDS 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +++D  KA  RI  AI  +E+I+++GDYD DG  S  ++++ L         YIP+R  
Sbjct: 60  WLMSDMQKAVDRINLAIDKNERILVYGDYDADGVTSTTILVQTLQKLGAEVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   ++ ++     G+DVIV DHH++      AY
Sbjct: 120 EGYGPNKYAFQNAYDEGVSLIITVDNGIQGHEEIEMVQALGVDVIVTDHHEIGRTLPKAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P   +      +LC AGV + +   +     +             + L  + T+ D
Sbjct: 180 AIIHPMHPEFEYPFKYLCGAGVAYKLSQCLIDHPPE-----------YFIVLATIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +GL    +     +++L+ +   +  I    +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRTIVQEGLKYLNQSCPFQIQSLLNQAGFNDEIDEGTIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+++DS+E   LA +++  N  R+ + + + E+A      +         ++
Sbjct: 289 DASLAAELLMAEDSEEANFLAEQVEAFNIERKDIVAQITEEALLMANEKV--ENGDKFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ + E     GS RSIE   +      +  +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDLEQHHAKGSARSIEQVSM--FEILSAHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+E  N   L     ++   +       P   I   L+   + ++
Sbjct: 405 DLISKFGGHHMAAGMTMEIDNIDALSKGLNEWMVQLSKHTSLEPTKHITTKLSEDDITVS 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  ++   P+G     P+F   + ++  ++ +     HL++       + L    F   
Sbjct: 465 NIHDIKILKPFGTDFEKPLFELDDTEVNDVKAIGKDKNHLKLVTGQAKLQHL----FWKN 520

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           G  + +  +   G+ +++ GHL +N W G++  Q+ + D +
Sbjct: 521 GGLITQIEL---GQPVNIIGHLQINEWNGNQTPQMMIQDLA 558


>gi|187934983|ref|YP_001884985.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723136|gb|ACD24357.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum B str. Eklund 17B]
          Length = 588

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/601 (28%), Positives = 292/601 (48%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW     +        I++K+ I +++ R+++NRN+  D   K++++P       DP  +
Sbjct: 4   RWFVKNIKADY---KNISKKYGISELITRLMINRNIVEDNMIKNYIHPIYSNFH-DPYEM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA   + + IY+ EKI I GDYDVDG  SV L+   L  C  N +  IPDRI DGY
Sbjct: 60  KDIEKATEILKEKIYSKEKIRIIGDYDVDGVISVYLLYTALKKCGANVDYEIPDRIKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N  ++ +  N+    ++T D G ++ + ++YA   G+ VIV DHH +   E       
Sbjct: 120 GINKKIILEAKNDEIDTLLTCDNGISAIEQIKYAKELGMTVIVTDHHDIPFAEDEKGDRT 179

Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  +++NP +++       +C AGV F ++ ++Y  ++         +L  L++ V
Sbjct: 180 FISSEADSIINPKQIECGYKFDKICGAGVAFKLIEVLYEKMKISK-----EELYKLIEFV 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304
           A+ATVCDVV LI  NR +V  GL +     N GLK L++   +    I+  +LG++IGP 
Sbjct: 235 AIATVCDVVDLIDENRIFVKNGLKMINNTTNLGLKYLMKETKMDGKEISTYHLGFVIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +  G RLL+S + +E   LA +L  LN  R+ M S  +E+A   +  +   
Sbjct: 295 INASGRLDSAKKGLRLLLSQNEEEALNLAKELVELNDERKSMTSHGVEKAIEII--EDST 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   V V+     H  + G++A R++EK+  P+  ++  EDG   GSGRSIE +++   
Sbjct: 353 MKDDKVFVIYIPEVHESLAGIIAGRIREKYNVPTIILTKAEDGV-KGSGRSIEEYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +L K GGH MAAGL+++  N   L     +  +  +      P   ID  L+
Sbjct: 410 EELLTCKELLNKFGGHPMAAGLSLDENNIDLLRKKLNR--NTKLTDEELVPKVIIDVPLS 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +N  +I+ LE   P+G GN  P+F   N       V+      L++  ++    T+ 
Sbjct: 468 LENINYDMINDLEILEPFGKGNSKPLFGAKNVNAVKAMVLGQNKNVLKIKLKTVIGRTID 527

Query: 543 AIAFRVYGT---------PLGEFLMQSRGK----RMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +I F                 E      G+     + +  +  +N + G+   Q+ + + 
Sbjct: 528 SIYFGDIQEFEQYITKKYNYEELQKLYDGEFNSVNLDLIFYPSINEYNGNINIQIVIQNY 587

Query: 590 S 590
            
Sbjct: 588 R 588


>gi|291286458|ref|YP_003503274.1| single-stranded-DNA-specific exonuclease RecJ [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883618|gb|ADD67318.1| single-stranded-DNA-specific exonuclease RecJ [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 592

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 186/594 (31%), Positives = 301/594 (50%), Gaps = 23/594 (3%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69
            S+  ++W+    +   +    +  +  +P  +   L  R   + D    +    ++ + 
Sbjct: 7   KSLR-YKWIYR--KPECSDISELADELGMPVCITEALYKRELFNADVLDAYFKTPLKGI- 62

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
             P ++ D +KAA  I ++I N+ KI I+GDYDVDG  SVALM  FL     +   YIP+
Sbjct: 63  SSPFLIKDMEKAAAAIAESIKNNTKICIYGDYDVDGVTSVALMFLFLKEVGADVTYYIPN 122

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYG N + ++     G++LIITVDCG  + + +QYA + G++VI+ DHHQ      
Sbjct: 123 RLQEGYGLNKTAIKDIAEAGSRLIITVDCGINAMEEVQYAVSMGVEVIITDHHQPSESIP 182

Query: 190 P-AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVAL 247
             A A+VNP R DD S    L   GV F +++ +   L +  +      ++   LDLV L
Sbjct: 183 EGAAAVVNPMREDDTSAFKGLSGVGVAFKLVMALRYKLNESGRFKGKIPNIKKYLDLVTL 242

Query: 248 ATVCDVVPLIGLNRAYVVKGLMV-ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
            T+ DVVPL+G NR  V  GL + + +   PGL+ L     I    +T  ++G+ + P I
Sbjct: 243 GTIADVVPLVGENRIIVRHGLEILSGKNCRPGLRELKRVAGIDGQKVTTTHVGFGLAPRI 302

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+G S+ G RLLI++D ++   LA +LD  N++R+ +E  ++E++  +V  +    
Sbjct: 303 NAVGRMGASDKGLRLLITNDREQSLYLAEELDKENKSRQDIERHIIEESFKRV-EKNKLH 361

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++   +V+  + WH G++G++A+RL EK+  P+  ++  EDG G GSGRSI  FD+ K +
Sbjct: 362 EKYKGLVLYSEEWHQGVIGIVASRLVEKYNLPAIVLT-FEDGVGKGSGRSIPSFDLYKGL 420

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + IL+  GGH  AAGL +E  +   L   F K   +++         KID ++  
Sbjct: 421 E--QMQDILLSFGGHKYAAGLRIEEQHITSLQKRFHKAVEDLLEPKDFVAELKIDALMEP 478

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLA--HLQMTFESQDSETLQ 542
           S V+  L+  L    PYGAGN  PVF      K Q    V     HL++  E ++ +   
Sbjct: 479 SDVSSELMKWLGRMEPYGAGNREPVFCMRGVNKHQEPVFVGRESMHLKIFLE-KNGKVFD 537

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN-YWRGSKRCQLRVLDASPVEGH 595
            I + +         +    +   +        Y+ G    QL + D  P +G 
Sbjct: 538 CIGYNMKAYK----DVVYGNESFDIVFSPAATGYYHGRYT-QLVLKDIKPADGE 586


>gi|302875218|ref|YP_003843851.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           cellulovorans 743B]
 gi|302578075|gb|ADL52087.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           cellulovorans 743B]
          Length = 589

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/599 (28%), Positives = 278/599 (46%), Gaps = 47/599 (7%)

Query: 29  RALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87
            A  +     I  I+A++L +R +   D  + FL  SI   M DP ++ D D A   I++
Sbjct: 4   AAQKLATDSFISPIIAKLLWDRGIRDKDEVEKFLKGSIDE-MYDPFLMKDMDLATSIIIK 62

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147
           AI+  +KI+I+GDYDVDG  S  +M + L         +IPDR  +GYG N   +E    
Sbjct: 63  AIFEEKKIVIYGDYDVDGVTSTVIMFKALKRVGARVTYHIPDREKEGYGLNKKSIEVLRE 122

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK----------SEEIPAYALVNP 197
           +G  +IITVD G  + + ++YA   G  V++ DHH +                A A++NP
Sbjct: 123 QGNSVIITVDNGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGERKEILPNADAIINP 182

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            R D      +LC A + F   V ++   + D K   N      L    +ATVCDVV LI
Sbjct: 183 KRSDCNYPFKYLCGASIAFKFAVALFIKRKIDYKEAYN----EYLQFAGIATVCDVVDLI 238

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGPSINAGGRIGESNL 316
             NR  +   L       N G+ +L +   ++   I+   +G+++GP INA GR+  + +
Sbjct: 239 DENRVILKNALKSINNSKNIGINSLRKFTLSLDKEISVYAIGFVMGPCINATGRLENAKM 298

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL++ + +  E LA +L  LN+ R+ M +  +E+   ++  +  D     V+VV   
Sbjct: 299 AVELLLTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEI--ELGDYYNDKVLVVYEP 356

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             H  I G++A R++EK+ +P+  ++   +G   GS RSIE ++I         + +L K
Sbjct: 357 TIHESIAGIIAGRIREKYNKPTIILTKAVEGV-KGSARSIEEYNIY--EELLKCKNLLDK 413

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH MAAG++++  N   L +        I+      P   ID  L++  ++ ++I  +
Sbjct: 414 FGGHPMAAGMSLKEENIEPLRETLNGKC--ILTDEDMIPKVVIDFPLSSHKIDDSIIYDI 471

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF-------- 546
               P+G GN  P+F   N  L+   V       L++ F  Q    + A+AF        
Sbjct: 472 GELAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQ-GRRIDAVAFKKYLELME 530

Query: 547 ----RVYGTPLGEFLMQSRG--------KRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      GE L  S G         R+ +      N ++G+K+ QL+V +    +
Sbjct: 531 IIEENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKKIQLKVHELRISK 589


>gi|225870751|ref|YP_002746698.1| single-stranded-DNA-specific exonuclease [Streptococcus equi subsp.
           equi 4047]
 gi|225700155|emb|CAW94297.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           equi subsp. equi 4047]
          Length = 736

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/592 (27%), Positives = 276/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S ++W     +        + Q   +    A+++ +R V + +    FL   +  L  DP
Sbjct: 4   SKYQWTIADKEPD-AGFFKLAQAKGLSQTAAKLIYDRGVHTEEELTSFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI QAI   E+I+++GDYD DG  + +++   L        +Y+P+R  
Sbjct: 62  YLLNDMEKAVHRIRQAIEGLERILVYGDYDADGMTAASIVKETLEMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G + ++A+ +A  QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEQVSLIITVDNGVSGHEAVAFAQAQGVDVIVTDHHSLPAELPDA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P           L   GV F +   +   +            +  LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPAAAYPFQKLAGCGVAFKLASALLETIP-----------VDFLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L++   +      E+ + + + P +NA GR
Sbjct: 231 DMVSLRGENRILVKNGLAVLKETERLGLQELMKLSEVDLAHFDEDVISFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +EL  LA+ +   N+ R+++   +  QA A +           V
Sbjct: 291 LDDPNPAIDLLTGFDDEELHELALMISSKNEERKVLVQEIFAQAMAMLDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E+ G+    ++  ++G   GS RS+E  +I    +    
Sbjct: 345 QVLAKSGWHPGVLGIVAGRIMEEIGQTVLVLT-IDEGLAKGSARSLESINI--FEALNSN 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGH  AAG+T+       L +   ++               I+G L+  A++I
Sbjct: 402 RSLFTAFGGHEGAAGMTLPSDRLEELSELLCQYVAAKGHDGQEKNTLLINGELDLEALSI 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             ++ L    P+G  N  PVF   +  ++  R +     HL+    S+ +     +AF  
Sbjct: 462 DSLNKLLLLAPFGMDNKKPVFYLKDFTIKQARTIGQQQSHLKFKV-SKGAVEADVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               L +   QS+G  + +   L +N+WRG    QL ++DA       F  +
Sbjct: 521 G--HLIQEYQQSQG--LELAVSLAINHWRGHTSLQLMLVDARVTGVQLFDIR 568


>gi|73662432|ref|YP_301213.1| single-strand DNA-specific exonuclease [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494947|dbj|BAE18268.1| putative single-strand DNA-specific exonuclease [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 759

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/580 (28%), Positives = 281/580 (48%), Gaps = 28/580 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           S + W     +  I   +++     +  IV ++L ++ ++   A D L  + + +M D  
Sbjct: 4   SKYTWDVKSPENEITEDVSL--DLKLTPIVKKILESKEITDKAAIDQLLKN-KQVMHDAW 60

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +++D +KA  RI  AI  ++KI+++GDYD DG  S  +++  L     +   YIP+R  +
Sbjct: 61  LMSDMEKAIERINLAIDQNQKILVYGDYDADGVTSTTILVETLKALGAHVGWYIPNRFSE 120

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN    +    EG  LIITVD G   +D +Q   + G+DVIV DHH++      A+A
Sbjct: 121 GYGPNEMAFKNAHEEGISLIITVDNGIQGHDEIQMIQDLGVDVIVTDHHEIGRTMPSAFA 180

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   +      +LC AGV + +   +           L+      L LVA+ TV D+
Sbjct: 181 IVHPMHPEFDYPFKYLCGAGVAYKLAQNL-----------LDEPPAYFLGLVAIGTVADL 229

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           V L   NRA V KGL +        +KA++++   +  IT E +G++IGP +NA GR+ +
Sbjct: 230 VSLTDENRALVQKGLEILNDHCPASIKAILKQAGYNDVITEETIGFIIGPRLNAVGRLED 289

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L + LL++D+ +E E LA +++  NQ R+ + + + E+A A    Q    Q    +++
Sbjct: 290 AALAAELLMTDNDEEAEFLAEQVEFFNQERKDIVAQITEEALAAAEDQVK--QGTKFLLL 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEG 432
               WH G++G++A+++ E +  P+  ++ +E      GS RSIE   +           
Sbjct: 348 AQADWHEGVLGIVASKIVETYSLPTLILNIDEAQDHAKGSARSIEQVSM--FEILNAHSD 405

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGH MAAG+T+   N   L      +   +       P  K+D  +  + + I  
Sbjct: 406 LISKFGGHHMAAGITMPIENIESLRQGLNDWMAQLASTTSLEPRKKVDVKVAETDITIKN 465

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           I  ++   P+G    +P F      +   + +     HL+M         LQAI F   G
Sbjct: 466 IQDIQRLRPFGTDFSSPCFELEGVIVNQAKAIGQDKKHLKMVLGDSQ---LQAI-FWQNG 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             + E   Q   + ++V G L +N W G +  Q  + D +
Sbjct: 522 HLVKELGEQ---QPINVIGTLQINEWNGFQSPQFMIQDLA 558


>gi|237748453|ref|ZP_04578933.1| ssDNA exonuclease [Oxalobacter formigenes OXCC13]
 gi|229379815|gb|EEO29906.1| ssDNA exonuclease [Oxalobacter formigenes OXCC13]
          Length = 564

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/560 (30%), Positives = 264/560 (47%), Gaps = 25/560 (4%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +  I  ++AR+   R ++       L+  +   M  P  L     AA  +  AI    KI
Sbjct: 19  RTGIHPVLARIFAARGITQTEE---LSTGLSG-MISPGQLAHIGDAAGFLADAIAAGRKI 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA-QLII 154
            +  DYD DGA + A+ +R L     N +  +P+R  +GYG  P ++ +        +I+
Sbjct: 75  TVIADYDCDGATACAVALRGLRLLGANVDYMVPNRFDNGYGLTPEIVRQAKEHHQTDIIL 134

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  S   ++ A   G+ V+V DHH    E      +VNPN+ D      +L   GV
Sbjct: 135 TVDNGIASIKGIEEALASGMQVLVTDHHLPGDELPQNCIVVNPNQPDCSFPSKNLAGVGV 194

Query: 215 VFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           +F VL+ +   +R+           L  LLDLVAL T  DVV L   NR  V +GL   R
Sbjct: 195 MFYVLLALRAEMRRRRIFDEKTQPHLDQLLDLVALGTFADVVKLDANNRILVAQGLRRIR 254

Query: 273 RQGN-PGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                PG+ AL +         +  +LG+ +GP +NA GR+ + +LG   LI+DD  +  
Sbjct: 255 AGNMQPGMAALFQVSGRDFRKASPFDLGFTLGPRLNAAGRLSDMSLGIECLITDDRGKAL 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +A +L+ +N  RR +E+ M  +A  ++       +  + I +  + WH GI+G+LA+R+
Sbjct: 315 EMADELNRINVERREIEADMRIEAREQISK--IHPEDRATISILSEDWHQGIIGILASRI 372

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448
           KEK+ RP+ A + ++DGK  GSGRSI  F +   +        G++V+ GGHAMAAGLT+
Sbjct: 373 KEKYFRPAMAFARDKDGKIRGSGRSIPEFHLRDALDLVAKRHPGLIVQFGGHAMAAGLTL 432

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +   F      F+  A   +       + + DG L+     +  I +L++   +G G P 
Sbjct: 433 QPDGFDVFTQAFENVAKEWLTQTQLERIIETDGSLDDDCFTLDFIGLLDT-QVWGHGFPV 491

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           PVF      + + RV+   HL++  E ++     AI F    T           +R  + 
Sbjct: 492 PVFCDE-FTVINQRVLKEKHLRLQLE-RNGRNYTAIQFGNNAT---------LPRRARLA 540

Query: 569 GHLCVNYWRGSKRCQLRVLD 588
             L  N + G    QL V  
Sbjct: 541 YRLDANEFNGRTSVQLIVEH 560


>gi|34497930|ref|NP_902145.1| exodeoxyribonuclease VII [Chromobacterium violaceum ATCC 12472]
 gi|34103785|gb|AAQ60146.1| exodeoxyribonuclease VII [Chromobacterium violaceum ATCC 12472]
          Length = 562

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/570 (28%), Positives = 276/570 (48%), Gaps = 28/570 (4%)

Query: 32  AITQKH---AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
            + QK     +  + AR+   R ++     D+    ++ L+P    L + +  A R+  A
Sbjct: 12  ELQQKLLGQGLTPLQARLYAARGIADSEELDY---GLKGLLPY-QKLKNVEAMASRLADA 67

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I   +++++  DYD DGA + A+ ++ LS         +P+R   GYG  P ++E    +
Sbjct: 68  IAAKQRLLVVADYDADGATACAVAVKGLSMLGAIIGFIVPNRFEYGYGLTPEIVELAAQK 127

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
              +I+TVD G  S   ++ A  +GI+V+V DHH      +P   +VNPN+        +
Sbjct: 128 RPDIIVTVDNGIASVAGVEAAKARGIEVLVTDHHLPGDT-LPEALIVNPNQPGCEFPSKN 186

Query: 209 LCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
           L   GV+F VL+ +   +R+          +L  LLDLVAL TV DVV L   NR  V  
Sbjct: 187 LAGVGVMFYVLMALRVEMRRRGVFDEQTQPNLGVLLDLVALGTVADVVRLDRNNRTLVEN 246

Query: 267 GLMVARRQGN-PGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISD 324
           GL   R     PG+ AL      +       +LG+ +GP +NA GR+ + +LG   L++ 
Sbjct: 247 GLKRMRAGRMAPGIAALFRVAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGIACLLAS 306

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384
           + ++   LA +LD LN+ RR +E+ M ++A A +     D      + +  D WH G+VG
Sbjct: 307 NEEQAMRLAQELDKLNRERRGIEAGMQDEALAALS--GIDAGNRYTLSLYRDDWHQGVVG 364

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAM 442
           ++A+RLKE+F RP+   +  ++G+  GSGRSI GF +   +        G+++K GGHAM
Sbjct: 365 IVASRLKERFHRPAIVFAPGDEGEIKGSGRSIPGFHLRDALDLVYKRHPGLILKFGGHAM 424

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AAGL+++   F      F+  A  ++     T + + DG L A  +++ L + L +A  +
Sbjct: 425 AAGLSLDESRFAEFQQAFEAVARELLDEKQLTRMIETDGSLPARDLSLQLAETL-AAEVW 483

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
           G G P P F      + + ++V   HL++   +++     A+ F                
Sbjct: 484 GQGFPVPYFHDQ-FMVVNQKLVGDKHLKLRL-AREGCEFDAMLFNHADW---------LP 532

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            R+     L  N W+G K  Q+ +   +  
Sbjct: 533 DRIQAVYQLIANEWQGRKELQVYLQHWAAA 562


>gi|322514056|ref|ZP_08067127.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus ureae
           ATCC 25976]
 gi|322120073|gb|EFX92044.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus ureae
           ATCC 25976]
          Length = 571

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/562 (31%), Positives = 276/562 (49%), Gaps = 19/562 (3%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           K +   ++ R+  +R ++       L  ++   +  P  L + D A   +++A     +I
Sbjct: 15  KLSDHPLLNRLYQSRGIASPQE---LERTL-QFLHRPNQLANIDAAVELLIEAYKQQSRI 70

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           +I GD+D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +G  +++
Sbjct: 71  IIVGDFDADGATSTALALLALGQLGFENVDYLIPDRFSQGYGLSLAVAEMVLVKGTDVVM 130

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S++ +      GI V+V DHH        A A+VNPN  D       L   GV
Sbjct: 131 TVDNGISSFEGIDLLKEHGIKVLVTDHHLPAESLPNADAMVNPNLADCSFPSKSLAGVGV 190

Query: 215 VFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
            F +++ +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R 
Sbjct: 191 AFYIMLALRGKMRELGCFKEKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLNRIRS 250

Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
                G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    
Sbjct: 251 GHCRAGIRALAEVSKRDLSSLQASDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQ 310

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           LA +LD LNQ R+  E  M  +A A           +QA  IV+    WH G++G+LA+R
Sbjct: 311 LAFELDSLNQTRKEFEQEMKTEALAICANLPSLMQKEQAHGIVLYQPDWHQGVIGILASR 370

Query: 390 LKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAG 445
           +KE+F RP    + E +      GS RSI G  +  ++         +++K GGHAMAAG
Sbjct: 371 IKEQFHRPVIVFAQESENSEYLKGSARSIAGLHMRDLLERIDSLYPDLIIKFGGHAMAAG 430

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+ + NF R    F +  + I+       V   DG L  S +NI + ++L+ AGP+G  
Sbjct: 431 LTIHQENFLRFQKVFDEIINEIIEPEQLQGVIYTDGELAPSELNIEIAELLQQAGPWGQN 490

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
            P P F     +L   R++   HL++  E  +     AI F        +  +    K++
Sbjct: 491 FPEPTFEGE-FRLLQQRILGGKHLKLMVEQPNGGLFDAIWFNADLRYFPDLSI----KQV 545

Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587
            +   L +N +RG+K  QLRV 
Sbjct: 546 KLVYKLDINEFRGNKNLQLRVD 567


>gi|331003335|ref|ZP_08326838.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412605|gb|EGG91990.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 572

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/580 (27%), Positives = 286/580 (49%), Gaps = 25/580 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +        I+ +  I  ++AR+++NR++  +    FL   ++ LM +   LT
Sbjct: 4   KWMLYTKRAEF---EKISARFNISPVLARIIINRDIKEEDFSIFLQNDLK-LMHNAGGLT 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             +KA   I++ I +  KI + GDYD+DG  S  ++++ L +   N ++ IPDRI DGYG
Sbjct: 60  GIEKAYEIIMEEIESGRKIRVVGDYDIDGVCSSYILVKALKYFGANVDVKIPDRIKDGYG 119

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA----- 191
            N +++    N+G  +IIT D G  ++  ++ A   GI VI+ DHH+V  E+        
Sbjct: 120 INDNIINDAANDGVSMIITCDNGIAAHSQMELAKRLGIKVIITDHHEVYQEDGKDLLPVA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             ++NP R D       +C   V + ++  IY  L        +  L  LL++ A+AT+ 
Sbjct: 180 NVVINPKRSDCDYPFKSICGGLVAYKLMEYIYERLYSKKIY-DDEKLTDLLEVAAIATIG 238

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           DV+PL+  NR  V  GL       N GL+ALI+   +    +TA ++G+++GP +NAGGR
Sbjct: 239 DVMPLVDENRILVKNGLKSLMHTKNLGLQALIKVTGMEGKKLTAYSIGFVLGPCLNAGGR 298

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  + +   + +++  +E    A  L  LN  R+ +    +++A      +  D     +
Sbjct: 299 LENALIALNMFMAESEEEAMEYASHLKELNDERKDLTLKNVKRAIEIAENEYSDND---I 355

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           +V+  D  H  I G++A R++E  G+P+  +  +F E+G   GSGRSIE +++    +  
Sbjct: 356 LVIYLDDCHESIAGIIAGRVREAVGKPTIILTEAFGEEGMIKGSGRSIESYNM--FEALY 413

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + I VK GGH MAAG+++++    +  +   +  ++ + A        ID  L  S +
Sbjct: 414 EVKDIFVKFGGHHMAAGMSLKKERLDKFRERLNE--NSKLCAEDFVQKIWIDIALPFSYL 471

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546
           ++  +  L+   P+G  N  P FA  + K+ S  ++      ++M  E  D   ++AI F
Sbjct: 472 SLDFVRELDKLEPFGNKNEKPKFARKDIKIISKTILGKNKNVVKMVLEDVDKTAVEAIYF 531

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
                    F      K + +  +  +N + G +  Q+ +
Sbjct: 532 GDGEEF---FKSIQDKKTIDIIYYPDINEYGGRESLQIVI 568


>gi|262370873|ref|ZP_06064197.1| ssDNA exonuclease [Acinetobacter johnsonii SH046]
 gi|262314235|gb|EEY95278.1| ssDNA exonuclease [Acinetobacter johnsonii SH046]
          Length = 568

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/560 (30%), Positives = 270/560 (48%), Gaps = 20/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP  +A +L  R V+     +         +  P  L   ++A + +  AI    KI+I
Sbjct: 20  DIPAFIAEILARRGVASTQELE----LKLKHLLAPS-LKGLNEAVQLMDAAIDQQHKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L          +PDR   GYG  P++ +  F +    L+ITV
Sbjct: 75  VGDYDADGATSTALMILALREMGAQVEYLVPDRFKYGYGLTPAIADLAFTSFTPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+D ++ A + G+ VI+ DHH        A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHDGVKQAQDHGMQVIITDHHLTTKPTPSAQAVVNPNQLGCDFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275
            VL  +    ++ N    +  +   LDLVAL T  DV  L   NR  V  GL   ++   
Sbjct: 195 YVLANLSTYRKKLN--KSSAVMSQYLDLVALGTYADVASLDYNNRILVDVGLKRIQQHLC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL+E      + + A++LG+++GP INA GR+   ++G   L++ D      LA 
Sbjct: 253 RPGISALLEIAGREAASLKAQDLGFVLGPRINAAGRMETMDIGIECLLAQDFASAYPLAE 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E+ M ++A   +   Q DD    + +++    WH G++G++A RLKE+
Sbjct: 313 QLNQLNVERRQVEATMKQEALIALDQIQLDDTVLPAALIMFEPHWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + +EDG    GS RSIEG  I   +         ++   GGHA AAGLT+++
Sbjct: 373 FHRPSIVFAADEDGVHIKGSARSIEGVHIRDAIECVAEQYPHLVSHFGGHAAAAGLTIQK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
           V+F      F+          + T     DG L A  + +  +D+L+   P+G   P P+
Sbjct: 433 VHFEEFKQAFEVLMAAQ-DEGLFTATLWTDGELAAENIQVETVDLLQQISPWGQKFPAPI 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   N ++   R +   HL++     + + + AIAF        ++       ++ +   
Sbjct: 492 FEG-NFQILDFRWLKEVHLKLRIALDNGQVVDAIAFNAAD----KYQFNEMNHQIRLVYE 546

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L  N +RG+   QLR+L   
Sbjct: 547 LDKNEFRGNVSVQLRILHLE 566


>gi|309803977|ref|ZP_07698060.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163979|gb|EFO66243.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LactinV 11V1-d]
          Length = 761

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 163/573 (28%), Positives = 280/573 (48%), Gaps = 30/573 (5%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80
             ++  +    +  K+ +  I A++   R ++ D   DF LN     L  DP ++ D +K
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMEK 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
              RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+  
Sbjct: 63  IVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
             ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  
Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           +        C AGV + +   +           +  ++  LLDL  + T+ D+V + G  
Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319
              V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   
Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H
Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GG
Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A GL++++ +  +L + F+     +  + +       D  LN + + +     +   
Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKV 465

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           GP+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L
Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518

Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
             +    +H+    L +N W    + Q  + D 
Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|182415274|ref|YP_001820340.1| single-stranded-DNA-specific exonuclease RecJ [Opitutus terrae
           PB90-1]
 gi|177842488|gb|ACB76740.1| single-stranded-DNA-specific exonuclease RecJ [Opitutus terrae
           PB90-1]
          Length = 573

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/587 (29%), Positives = 281/587 (47%), Gaps = 24/587 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW             A+++   +  ++A +L+   +        FL P++  L  DP +L
Sbjct: 2   RWTHTPVP--TEEIEALSKGAGVSRVLAELLLRAGLRDAGGCATFLAPALAALQ-DPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + D AA R+ QAI N E +++ GDYDVDG +S AL++  L    +     +P R  DGY
Sbjct: 59  RNVDAAATRLRQAIANQESVVVLGDYDVDGVSSTALLVSVLRRFGLLPRFVVPRRSEDGY 118

Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G + S +++ +      L + +DCG+ S+D + Y   QGIDVIV+DHH+ K   +    +
Sbjct: 119 GLSRSAIDRALEGGRPHLFVVLDCGTNSHDEVAYLREQGIDVIVLDHHRSKERALDGMLI 178

Query: 195 VNPNRLDD---LSGQGHLCAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATV 250
                 DD        HLC  G+VF +   + + LR +N  V     L   LDLVAL TV
Sbjct: 179 NPHVHRDDTGADGPWRHLCTVGLVFKLAHGLLKQLRAENHPVAFRIKLRDHLDLVALGTV 238

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAG 308
            D+VPL+G NR     GL + +    PGL+AL+E   +     I   ++ + +GP INA 
Sbjct: 239 ADLVPLLGENRILARHGLTILQESRRPGLRALMEVAGVKPENGINPVDISFRLGPRINAS 298

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ ++ L   LL+S+D    +  A +LD  N+ R+ +E  + E+AE  + T   D   +
Sbjct: 299 GRLADAALSVELLLSEDLAFCQQTAQQLDAFNRERQEIERKITEEAEQLIETHYAD---S 355

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
             IV+  + WHPG+VG++A R+  K+ RP   +  E +    GSGRSI+G ++ +++   
Sbjct: 356 PGIVLFSEDWHPGVVGIVAGRVTRKYNRPCVVLGNEGE-FAKGSGRSIDGLNLVEVLGTC 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                LV  GGH MA G+ + + +     + F           I     ++   L    +
Sbjct: 415 C--DHLVSWGGHPMAVGIALRKEHLPVFREQFAAAVRTQAGDAIAEARLELAAWLTPEQI 472

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFR 547
              L+D LE   P+G GN  P F      L++   +    H +  FE Q    L  +A++
Sbjct: 473 TPRLMDELEQLHPFGQGNAEPRFGVRGVVLRTAPEIFKTFHFRFNFEDQRGRRLHGVAWK 532

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           +    L        G  + +   L  N++   K  QL ++D  P  G
Sbjct: 533 MASRLLP------VGVPVDLAVELKWNHFNDRKFLQLCLVDWRPSAG 573


>gi|160934228|ref|ZP_02081615.1| hypothetical protein CLOLEP_03099 [Clostridium leptum DSM 753]
 gi|156866901|gb|EDO60273.1| hypothetical protein CLOLEP_03099 [Clostridium leptum DSM 753]
          Length = 710

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/579 (31%), Positives = 281/579 (48%), Gaps = 23/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +WV+    + I  A  I Q + +   ++ +LV R   S +  + FLN        DP +
Sbjct: 22  KQWVTAPLDKEI--AKTIAQTYGLSQFLSMMLVIRGFHSKEQIESFLNT--PDSCFDPFL 77

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D A  RI QA+   EKI I+GDYD DG  S +L+  +L     +   YIP+R  +G
Sbjct: 78  LKDMDLAVERIHQALDQFEKICIYGDYDADGVTSTSLLYSYLESLGADVMYYIPERESEG 137

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYA 193
           YG N   + K    G +LIITVD G  +   ++YA +  ID +V DHH Q      PA A
Sbjct: 138 YGMNIDAVRKLSELGVRLIITVDNGIAAAREVEYANSLHIDTVVTDHHQQQGDILPPAVA 197

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P+RLD      ++   GV F ++  +     +D        L +  DL A+ T+ D+
Sbjct: 198 VVDPHRLDCDCPFKNMAGVGVTFQLISALE---GKDGGFST--LLENYSDLAAIGTIGDI 252

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VPL   NR  V  GL    R    G++ALI    +    +T+  + + + P INA GR+G
Sbjct: 253 VPLEKDNRVLVKHGLAQLSRTDRLGIQALITESGLEGKKLTSTAVAFSLVPRINAAGRLG 312

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            S    +LL+S+   E E LA ++   NQ R+ +E  +  Q E  +     + +   ++V
Sbjct: 313 SSRQAVKLLLSEYPDEAEDLAREIGEQNQQRQKIEGDIALQIEEYLQAH-PERRFDRILV 371

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V+G+ WH G+VG++A+R+ EK+G+P   IS E +    GSGRS+EGF +   V    E  
Sbjct: 372 VDGENWHAGVVGIVASRVVEKYGKPCVVISREGE-LSRGSGRSVEGFSLSDAVYACREH- 429

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            LV+ GGH MAAG+T++             +A    P  +  P   +D  L    +++ +
Sbjct: 430 -LVRFGGHPMAAGITIKTDKIDDFRLAINAYAAQRHP-QMPYPKLLLDCKLRPQVLSLDI 487

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGT 551
           ++ L    P+G GNP P+F   +  L  I       HL++ F+ ++   + A+ F V   
Sbjct: 488 VEELTLLEPFGTGNPAPLFGLYSMTLTGITPCGNRKHLRLAFQ-REKVKITAMRFSVT-- 544

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              E      G  + +   L  N +RG     + + D  
Sbjct: 545 --PEEFPYQPGDILDLAVTLERNEYRGEASLSIHIRDLK 581


>gi|325262047|ref|ZP_08128785.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. D5]
 gi|324033501|gb|EGB94778.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. D5]
          Length = 570

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 184/584 (31%), Positives = 302/584 (51%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W   + +   N    I  K+ I  I+AR++ NR++  D   + +LN +I  L  D +++
Sbjct: 3   KWFVCMKKADFN---GIADKYHISPILARLIRNRDMMEDGEIEFYLNGTIADLY-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I   + I + GDYD+DG  +  ++   +S      +  IPDRI DGY
Sbjct: 59  MDMDKAVEILAEKIRGGDAIRVIGDYDIDGVNATYVLQEGISRLGGVVDTDIPDRIRDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N  L+++ + +G   IIT D G  + D + Y   QG+ +IV DHH+V   +       
Sbjct: 119 GLNRMLIDRALEDGIDTIITCDNGIAASDEIAYGKQQGLTIIVTDHHEVPYLDAGGEKEY 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+V+P+R D       LC A V + ++  +Y ++++D       D+  L++ VA
Sbjct: 179 LLPPADAVVDPHRPDCEYPFKGLCGAAVAYKLVEALYEVMQKD-----VDDIDYLMENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ L G NR +V +GL + +R GNPGLKALIE   +    ++A ++G+++GP I
Sbjct: 234 IATVGDVMDLQGENRIFVKQGLEMLKRTGNPGLKALIECTGVPVDRLSAYHIGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +   +E  MLA  L  LN +R+ M    +EQA  ++  +   +
Sbjct: 294 NASGRLDTAKRALELLNAPSRREAVMLAEDLKALNDSRKEMTEKGVEQAVDQI--ENTSL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+VV     H  I G++A R+KE++ RP+F ++  E+G   GSGRSIE +++    
Sbjct: 352 KEDKVLVVYLPECHESIAGIIAGRIKERYYRPTFVLTQGEEGV-KGSGRSIESYNM--FE 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +  K GGH +AAGL++E  N  R  +   + A  ++      P   ID  L  
Sbjct: 409 EMCRCRALFTKFGGHKLAAGLSLEEDNVDRFRETINELA--VLSEEDLLPKVSIDMQLPL 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           + V  AL+  LE   P+G GN  P+FA  N K+   R++      L+   + +    ++A
Sbjct: 467 AYVTEALVSELEILEPFGKGNTKPLFAEKNLKVLRPRIIGKNQNVLKFQVQDKRGNQMEA 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           I F    + L       + + M  T +  VN + G +  Q+ V+
Sbjct: 527 IYFGDAASCLEYI---RQKEEMSFTFYPSVNEYMGKRTLQITVV 567


>gi|329896804|ref|ZP_08271720.1| Single-stranded-DNA-specific exonuclease recJ [gamma
           proteobacterium IMCC3088]
 gi|328921559|gb|EGG28939.1| Single-stranded-DNA-specific exonuclease recJ [gamma
           proteobacterium IMCC3088]
          Length = 581

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/564 (32%), Positives = 274/564 (48%), Gaps = 21/564 (3%)

Query: 42  IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
           + AR+L +R V        L+     L+P P  L     AA  I  A+  +++I++ GD+
Sbjct: 24  LFARILASRGVCSSDE---LDLGFGGLLP-PSGLLGARDAAALIASAMSRNQRILVVGDF 79

Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
           D DGA SV L +  +          +P+R   GYG  P ++E        LI+TVD G  
Sbjct: 80  DADGATSVTLFVSCMRAFGYEVQYLVPNRFDYGYGLTPEIVEVATQYAPDLIVTVDNGIA 139

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           S+  +  A  +G  V+V DHH        A  +VNPN+ D       L   GV+F VL+ 
Sbjct: 140 SHAGIDLAKAKGWQVLVTDHHLPAETLPNADVIVNPNQPDCAFQSKALAGVGVIFYVLLA 199

Query: 222 IYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GN 276
           +   LR             +L   LDLVAL +V DVVPL   NR  V +GL   R     
Sbjct: 200 LRAFLRDQGWFEAKGIVEPNLAEFLDLVALGSVADVVPLDRNNRILVEQGLRRMRSGIMR 259

Query: 277 PGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
           PG++AL+E  N S   + A++LG+ +GP INA GR+ + ++G R L+S D  E   LA +
Sbjct: 260 PGIQALLEVANKSWRTLVAQDLGFALGPRINAAGRLDDISVGIRCLLSRDLFEARELANR 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           LD  N+ RRL+E  M   A+  +      +  +  + I +    WH G+VG+LA+R+KE+
Sbjct: 320 LDEFNRERRLIEQTMKADAQVLLAQLPAFEAGKLPAAITLYDASWHQGVVGILASRIKEQ 379

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVERV 451
           + RP    + + +    GS RSIEG  I  ++     +  G++ K GGHAMAAGLT+   
Sbjct: 380 YHRPVIVFANDGEQYLKGSARSIEGVHIRDVLDSIATMNPGLISKFGGHAMAAGLTIPAS 439

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
                      F  +  P  +  PV   DG L+ S  ++++   L    P+G   P P+F
Sbjct: 440 ALEAFGQALDNFLEDNTPPELFYPVKLSDGALSESEFSLSVAQELRVLQPWGQQFPEPLF 499

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                ++  +R+++  H +M  E   S   L AIAF V      +F   + G+ +     
Sbjct: 500 DNE-FRIVELRILSGQHAKMRLELASSNAMLDAIAFNVD----VDFYQANLGQTLRFLYR 554

Query: 571 LCVNYWRGSKRCQLRVLDA-SPVE 593
           L VN +RG +  QL +  A  P+E
Sbjct: 555 LDVNEFRGLESLQLIIEYAERPLE 578


>gi|292670700|ref|ZP_06604126.1| recombination protein J [Selenomonas noxia ATCC 43541]
 gi|292647646|gb|EFF65618.1| recombination protein J [Selenomonas noxia ATCC 43541]
          Length = 659

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/582 (30%), Positives = 290/582 (49%), Gaps = 28/582 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+           + + ++  I  I+ ++L +R + S D A+ FL+P       DP +
Sbjct: 3   KEWIVHK---ECAEGIELARELGISPIIGQILWHRGIGSADAARAFLHPE-NEAFRDPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D +KAA+RI+ A++  EKI+++GDYDVDG  S A++M+ +     + + YIP+R  +G
Sbjct: 59  MKDMEKAAQRILSAVHRGEKIVVYGDYDVDGMTSTAILMKNIHALGGDVSYYIPNRFTEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + +++   EG  L++TVDCG +S   +Q      +D+IV DHH    E   A A+
Sbjct: 119 YGINLAALQQIAAEGCGLLVTVDCGISSVQPIQEIHGA-MDIIVTDHHLPGRELPAALAV 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP+R D       L   GV F ++  +         +         +D+ AL T+ D+V
Sbjct: 178 VNPHRADCSYPDKDLAGVGVAFKLVQAM-------QMIEKQRVWEDDMDIAALGTISDLV 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL+G NR  V  GL         G++ALI    +    I    +G+ +GP +NA GRI  
Sbjct: 231 PLVGENRRIVRLGLARMSENPCWGVRALIMAAGLEGKKINTGMVGFQLGPRMNAAGRIET 290

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G  LL+S+D+QE E +A +L+ LN  RR +E  +L +AEA ++      Q    I+ 
Sbjct: 291 ARRGVDLLLSEDAQEAECIAGELNALNAERRSLEQDILAEAEAMLVDFT---QDTPAIIA 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ W+ G++G++A+RL E++ RPS  ++ + D    GS RSI G  + K +    E   
Sbjct: 348 AGEDWNAGVIGIVASRLVERYYRPSIVLTRQGD-VYKGSCRSIAGLHMYKALEACRE--T 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGH MAAGL+V           F  +    +      P  +I+ ++  +   + ++
Sbjct: 405 LIQFGGHEMAAGLSVASAQLEEFRMAFSNYVRTHLMPADFIPKTQIEALVAPADWTLEMV 464

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
           + LE   PYG GNP P+F     + QS   +     HL+M   ++++  + A+ +     
Sbjct: 465 EELELLEPYGMGNPRPIFGVRAIRPQSASAIGAEGKHLRMEIGTRENH-VAALCWNAGE- 522

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            L E L +       +     +N W+G +  Q       P E
Sbjct: 523 -LAEILTEEDS---DLAYTPSINEWQGIRSVQCMAESVMPAE 560


>gi|17545834|ref|NP_519236.1| single-stranded-DNA-specific exonuclease [Ralstonia solanacearum
           GMI1000]
 gi|17428128|emb|CAD14817.1| probable single-stranded-dna-specific exonuclease protein
           [Ralstonia solanacearum GMI1000]
          Length = 565

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/574 (30%), Positives = 269/574 (46%), Gaps = 24/574 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
                  ++   H I  I+AR+L  R V+       L+  +  L+P P  L   D AAR 
Sbjct: 8   PHSAETASLLAGHGIHPILARILAARGVARP---SELSTELTDLLP-PAQLKGIDDAARY 63

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG +P ++  
Sbjct: 64  LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              E   +++TVD G      +  A   GIDV+V DHH   ++   A  +VNPN+     
Sbjct: 124 AARERPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262
              HL   GV+F VL+ +   LR            L +LLDLVAL TV DVV L   NR 
Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRNRGAFTPQNQPRLDALLDLVALGTVADVVRLDANNRL 243

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R  +   G+ AL       +   +  +LG+ +GP +NA GR+ + +LG   
Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC--DDIQQASVIVVEGDRW 378
           L++DD      +A +LD +N+ RR +E+ M ++A A + +     D      I V  + W
Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILASTLAGMDGAGRHTIAVYNETW 363

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436
           H G++G++A+RLK+KF RP    +  +DG   GSGRSI GF +   +        G++VK
Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAGL++    F R  + F+      +   + + V + DG   A       +++L
Sbjct: 424 FGGHAMAAGLSLHADGFDRFVETFEAVGREWLDESLLSRVLETDGEAEAECFTPQFVELL 483

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           E+   +G G P P F      + S  V+   HL++    +  +   AI F          
Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFDAIWFNHAE------ 534

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                G   +V   L  N + G  R Q+ +  A 
Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565


>gi|242280277|ref|YP_002992406.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           salexigens DSM 2638]
 gi|242123171|gb|ACS80867.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           salexigens DSM 2638]
          Length = 577

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 281/583 (48%), Gaps = 24/583 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W     +E  +   AI  +  I +++A +L NR   S +    FL+P +R L   P  
Sbjct: 3   KIWKLRSEEELPSSIPAIADELGITELLAEILWNRGFQSREDMDLFLSPGLRNLCQ-PKE 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   + AA+ +   +   +K+ ++GDYDVDG  S A++  FL+      + Y+P+R+ +G
Sbjct: 62  IPGLELAAQVLADGLAVGKKMAVWGDYDVDGVTSTAVVKTFLADRGYECDHYLPNRLEEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++K   +G  L++TVDCG T+   +  A   G+ V+V DHH    E  PA A+
Sbjct: 122 YGLNVDGIKKLHEQGIDLLLTVDCGITNNAEIAAANELGMTVVVSDHHLPGDELPPAAAI 181

Query: 195 VNPNRLDDLSGQGHLC------AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
            NP   +        C        GV F+++  + R+L  D       D+ + LD VAL 
Sbjct: 182 CNPRLTEYNGQNFENCPCATLAGVGVAFMLMAQLNRLLPGD-----PADVRAYLDFVALG 236

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSIN 306
           T+ DVV L G NR  V  GL++ +    PGL AL           I A  +G+ + P IN
Sbjct: 237 TIADVVELQGQNRILVKNGLLLLKEAKRPGLAALKVVSGYDMFAAIGAGQVGFGLAPRIN 296

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+G+     +LL+++D +    +A  LD LN  RR  E  +L++A A+   +     
Sbjct: 297 ASGRMGDPGRALQLLMAEDMETARPIAKVLDELNTERRAEEDRILQEAIAQA-EEHIKRD 355

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
             + +V+    WHPGI+G++A+R+ EKF RP+  +  EEDG   GS RSI+ F I     
Sbjct: 356 NRAGLVLYSKSWHPGIIGIVASRVVEKFYRPTVML-CEEDGVVKGSARSIKEFHIH--EG 412

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                 + +  GGH +AAG++ +        + F +   + + +       K+D  L   
Sbjct: 413 LTSMSELFLNFGGHKLAAGMSFKAELLSEFRERFDQAVIDKIGSEPLKASLKVDRELPLE 472

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIA 545
            ++  L+  LE   P+G GNP PVF  P  ++   R +  AH+++T    + +  + A A
Sbjct: 473 NIDYVLLKELELMQPFGMGNPEPVFTTPPVEVLERRPMGKAHVKLTVTDLEKTRKMPAKA 532

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           +R+      E +    G  M       ++ + G    +L + D
Sbjct: 533 WRMAEELGSELI----GSTMRFAFSPKIDKFNGIPTIELTIRD 571


>gi|300114432|ref|YP_003761007.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus
           watsonii C-113]
 gi|299540369|gb|ADJ28686.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus
           watsonii C-113]
          Length = 574

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/567 (30%), Positives = 270/567 (47%), Gaps = 25/567 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  ++ RV   R +    A D L+ ++  L P P +L++   A   + +A+    +I++ 
Sbjct: 20  IHPVLRRVYGARGI---KAPDELDYTLERL-PSPWLLSNIKTAVTLLRKALARDWRILVV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITV 156
            D+D DGA S A+ +R L        +  +P+R + GYG  P+++ E        LIITV
Sbjct: 76  ADFDADGATSCAVAVRALRLMGAHKVDYLVPNRFIHGYGLTPAIVAEAVAQGQPDLIITV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +Q A    I V++ DHH   +    A A+VNPN  +D      L   GV+F
Sbjct: 136 DNGISSLDGVQAARAANIRVLITDHHLPGASLPAANAIVNPNLPNDPFPSSCLAGVGVIF 195

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ +   LR+             L  LLDLVAL TV DVVPL  +NR  V +GL   R
Sbjct: 196 YVMLALRAHLREQGWFAHRDEQEPALAPLLDLVALGTVADVVPLDQINRILVAQGLARIR 255

Query: 273 RQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +          +         +   +LG+ +GP +NA GR+ + +LG   L++D  +  +
Sbjct: 256 QSRCCAGIQALVACARRPLETLATSDLGFAVGPRLNAAGRLEDMSLGIACLLTDSLELAQ 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD--DIQQASVIVVEGDRWHPGIVGLLAA 388
             A +LD LN+ RR +ES M  QA   +       + ++     +  + WH G++GLLAA
Sbjct: 316 QQANQLDRLNRERREIESTMQAQAVTHLENLVFQGEEKEPLGYCLFDECWHQGVIGLLAA 375

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R++E+  RP  A +  +  +  GS RSI G  I   +         +L K GGHAMAAGL
Sbjct: 376 RIRERVYRPVIAFAPHDSEELKGSARSIPGLHIRDALDRVATCYPDLLTKFGGHAMAAGL 435

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++ R +       F +    ++       V   DG  N    ++ + + L   GP+G G 
Sbjct: 436 SLRRGHLEPFRVAFLEVLETLLDKEALEDVILSDG--NLEQWDLEMAETLRDGGPWGQGF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P P+F     ++   R+V  AHL++   + D  + L+ IAFR            + G ++
Sbjct: 494 PEPLFDG-VFRVAGFRIVGEAHLKLMLATLDGQQQLEGIAFRCLPPD-----GFAPGVKI 547

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +   L VN +RGS+  QL V     +
Sbjct: 548 RLAYRLDVNIYRGSRTAQLMVEHLEVI 574


>gi|260437938|ref|ZP_05791754.1| single-stranded-DNA-specific exonuclease RecJ [Butyrivibrio
           crossotus DSM 2876]
 gi|292809689|gb|EFF68894.1| single-stranded-DNA-specific exonuclease RecJ [Butyrivibrio
           crossotus DSM 2876]
          Length = 573

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/584 (30%), Positives = 290/584 (49%), Gaps = 34/584 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
             W     +   +   AI +K+ I  ++ARV+ NR++  D A D +LN S+   M DP++
Sbjct: 2   QEWRIYSKKADFS---AIGKKYGIDQVIARVIRNRDIEGDAAMDSYLNGSVDS-MYDPML 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA   ++  I N  KI I GDYD+DG  S+ ++ + L     + +  +PDRI DG
Sbjct: 58  MKDMGKAVDILLDTIKNKRKIRIIGDYDIDGICSIYILFKGLLFLGADVDYEVPDRIKDG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------ 188
           YG N +L+++  ++G ++I+T D G  + + ++YA + G  VIV DHH ++ EE      
Sbjct: 118 YGINENLIKQAYDDGREVILTCDNGIAATEQVRYARSLGFTVIVTDHHDIRYEEIDGKKT 177

Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A A+VNP + D       LC AGV + ++  +++    + K          L   
Sbjct: 178 YILPEADAIVNPKQSDCSYPCSFLCGAGVAYKLMQELFKRTGNEGKE------REFLVFA 231

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
            +ATV DVV L   NR +V +GL   +   N GL+AL          I A ++G++IGP 
Sbjct: 232 GIATVGDVVDLKDENRIFVKEGLKQFKETDNYGLRALTVINGLDDKEICAYHIGFIIGPC 291

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GR+  +    ++L+S D  E E LA  L  LN+ R+ + +A +  AE  V     D
Sbjct: 292 LNASGRLDTAKRALKMLLSKDKYEAERLAGDLVSLNEERKSLTAAAVILAEKIVDENYTD 351

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
               +V+V+     H  I G++A R++EK+ +P   ++  EDG   GS RSIE ++I   
Sbjct: 352 ---DTVLVIYLPDCHESIAGIVAGRIREKYYKPVIVLTKGEDGV-KGSARSIESYNI--F 405

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                   +L K GGH +AAG++++  N   L  +  +  H+ +     T    ID  + 
Sbjct: 406 EKLCECSHLLTKFGGHPLAAGMSLKEENIEELRKYLNE--HSNLTKDDLTEKVWIDVPMP 463

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQ 542
              +N  +I+ L    PYG GN  PVFA  N  + S   +       +M  +  +  ++ 
Sbjct: 464 LEYINEDIINELSLLEPYGKGNEKPVFADKNLIIVSFMRIGRDGKFAKMELKKNNGMSIF 523

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           A+ F         F+     KR+  T +  +N +RG+K+ Q+ +
Sbjct: 524 AMCFNNCDGLNEAFI---NNKRISCTYYPEINEFRGNKKLQICI 564


>gi|331090636|ref|ZP_08339487.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401076|gb|EGG80671.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 571

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 299/584 (51%), Gaps = 31/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W              I+QK  I  ++AR++ NR++   D  + +LN ++  L  D +++
Sbjct: 3   KWFLTRKGADFQ---KISQKFHINPVIARLIRNRDIVGDDEIQFYLNGNVENLY-DGILM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A   I + I   + I I GDYD+DG  +  +++  +     + ++ IPDR+ DGY
Sbjct: 59  KDMSVAVDIIREKIQERKSIRIIGDYDIDGINATYILLEGIEKLGGDVSVDIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N +L+++   +G   IIT D G  +   + Y  + G+ ++V DHH+V  EE       
Sbjct: 119 GLNKTLIDRAFEDGVDTIITCDNGIAAGGEIAYGKSLGMTIVVTDHHEVPYEETEEGIRY 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+++P R D      HLC AGV + ++  ++ +  +D       ++  L++ VA
Sbjct: 179 LLPHADAVIDPKREDCEYPFPHLCGAGVAYKLVETLFNVEGRD-----AGEIEYLIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ LIG NR +V  GL   ++  N GLK+LIE   +    +++ ++G++IGP +
Sbjct: 234 IATVGDVMDLIGENRIFVKYGLEKIKKTKNLGLKSLIECTGVEVDRLSSYHIGFVIGPCL 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +    + ++LA  L  LN +R+ M +  +E+A  +V  +   +
Sbjct: 294 NASGRLDTAKRALELLRAKTKADADILAGDLKALNDSRKEMTAEAVEEAVEQV--ENTSL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++ +V+V+     H  + G++A R++EK+ RP+F ++  E+G   GSGRSI+ + + + +
Sbjct: 352 KEDTVLVIYLPDCHESLAGIVAGRIREKYHRPTFVLTNAEEG-AKGSGRSIDAYHMYEEM 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +    + +L K GGH +A GL++   N         +     +          ID  L  
Sbjct: 411 NKC--KDLLEKFGGHKLAGGLSIPIENIDLFRKRLNENCE--LSEDELYEKVSIDMQLPL 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           S V+  LI+ LE   P+G GNP PVFA  + +++  R++      L++         ++ 
Sbjct: 467 SYVSETLIEELECLEPFGKGNPKPVFAEKDIQIRGTRILGKNKNVLKLQLSDMYGTEMEG 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F   G  +    ++++  ++++T +  VN + G K  Q+ + 
Sbjct: 527 MYFGDVGRVMD--TIENKNGKINITYYPTVNEYMGRKTLQIVIQ 568


>gi|168333635|ref|ZP_02691895.1| single-stranded-DNA-specific exonuclease RecJ [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 679

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/580 (29%), Positives = 282/580 (48%), Gaps = 31/580 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           + + W  L      +             I+  +L  +N+     + FLNP I  L  DP 
Sbjct: 4   NNYEWKFLSNNPNKS-------------IIDNILAAKNILDSDKESFLNPKIADLH-DPF 49

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            L D DKA  RI+ AI   ++I I+GDYD DG  S +++  FL+      N YIP+R  +
Sbjct: 50  ALLDMDKAVIRILDAISQKQQITIYGDYDADGITSTSVLYMFLTEVGAKVNYYIPNRFTE 109

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N   +    +    LI+TVD G T+   + +A ++GIDVI+ DHHQ   +   A+ 
Sbjct: 110 GYGMNIDAILYLADNKTDLIVTVDNGITAIAEVDFARSKGIDVIITDHHQCLDQIPDAHC 169

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +VN  R +      +L   G+VF ++  I   L+      L   +   LDLV++ T+ D+
Sbjct: 170 IVNYKRPNCTYPSQNLAGVGIVFKLITAIATTLKLS----LEEYVYKYLDLVSIGTIADM 225

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VPL+  +R     GL +     NPGL+AL+  +N +  PIT+  + + + P INA  R+ 
Sbjct: 226 VPLLQESRVIASLGLKLITHTRNPGLRALLNIINKNSQPITSYTIAFQVAPRINAISRMS 285

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   L  + D+Q    LA  LD  N  R+  E+ ++  A  + +    D+ +  V+V
Sbjct: 286 DANLAIELFTTQDTQRAATLAQLLDNNNIKRKAKEAEIV-TAAFEYVKNNIDLSKEKVLV 344

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           + G  WH G++GL+A+++ + + RP+   +  +  K +GS RSI+GF I   ++   ++ 
Sbjct: 345 ITGTDWHHGVLGLVASKISQHYYRPTIVCT-LDGDKYVGSARSIDGFSIINAITE--QQQ 401

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            L+K GGH  AAGLT+         +   K  + I+   + TP   ID  +  S V I L
Sbjct: 402 YLIKYGGHTQAAGLTISASKIRNFTEDINKANYEILDKQLLTPKIYIDATVPLSEVTIDL 461

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
            + L +  P G  N +P+      K+  I  +     HL++  E  +++ L  I F    
Sbjct: 462 YNSLSALEPCGQNNSSPILLVKG-KISKIIHMGKRSEHLKIILED-NNKFLDVIIF--SQ 517

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             L  FL  ++G+ + + G +  N W G    Q  +    
Sbjct: 518 GQLSNFL--NKGEEVEIAGSISKNEWNGKTTIQFMMTAIR 555


>gi|288924942|ref|ZP_06418878.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae
           D17]
 gi|288338132|gb|EFC76482.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae
           D17]
          Length = 507

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/514 (29%), Positives = 257/514 (50%), Gaps = 14/514 (2%)

Query: 16  FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           F+W          +A   + +K  +   +A++L+ R ++ +  AK F  P +  L+ +P 
Sbjct: 3   FKWNYQTPTPDERQAADELGEKLNMSPTLAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D D A  R+  A+   E+I+++GDYDVDG  +VAL+ +FL     N   YIPDR  +
Sbjct: 62  LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIGYYIPDRYDE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +   ++     G +LII +DCG  + + + YA + GID I+ DHH       PA A
Sbjct: 122 GYGVSKKGIDYAKETGVKLIIILDCGIKAVEEITYAKSLGIDFIICDHHVPDEVMPPAVA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R DD     HLC  GV F  +    +     N       L+ LLD   +A   D+
Sbjct: 182 ILNPKRPDDSYPFKHLCGCGVGFKFMQGFAK-----NNDIAFSRLIPLLDFCTVAIAADI 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           VP++  NR     GL    +  + GLK++I+   ++   I+  ++ + IGP INA GR+ 
Sbjct: 237 VPVMDENRILAFHGLKQLNQNPSIGLKSIIDICGLNGREISMSDIVFKIGPRINASGRME 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  +      +A  ++  N+ R+ ++  M E+A  +++++ +  +  S IV
Sbjct: 297 NGRESVDLLVEREFPVALRMATHINEYNEQRKDIDKQMTEEA-NQIVSRLESQRHRSSIV 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W  G++G++A+RL E + RP+  ++  +     GS RS+ GFD+   +       
Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDMATGSARSVTGFDVYSAIKSC--RD 412

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+  GGH  AAGLT++  +     D FQKF    +    T     ID +++   +N  L
Sbjct: 413 ILINFGGHTYAAGLTMKWEHVKEFRDRFQKFVEEHIEPEQTEATLNIDAMIDFKDINKRL 472

Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN 525
              L+   P+G GN  P+F         + +VV 
Sbjct: 473 HTDLKRFAPFGPGNSKPLFCTCGVYDYGTSKVVG 506


>gi|70726286|ref|YP_253200.1| hypothetical protein SH1285 [Staphylococcus haemolyticus JCSC1435]
 gi|68447010|dbj|BAE04594.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 757

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/581 (25%), Positives = 288/581 (49%), Gaps = 30/581 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72
           S + W+     E IN    + +K+ +  I+ ++L +++++ D   K  L+ +I     DP
Sbjct: 4   SKYNWLYEPPTEYIN--ETLIKKYQLTPIIKKLLESKSITDDESIKALLDETIIN--HDP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D +KA  RI +AI  +E+I+++GDYD DG  S  ++++ L         YIP+R  
Sbjct: 60  WLLSDMEKAVTRINEAIDKNERILVYGDYDADGVTSTTILVKTLQTLGAEVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN        +EG  LIITVD G   +  ++     G+DVIV DHH++      AY
Sbjct: 120 EGYGPNELAFRNAYDEGVSLIITVDNGIQGHKEIEMVQKLGVDVIVTDHHEIGHTLPEAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +       LC AGV + +  ++           L+      + L A+ T+ D
Sbjct: 180 AIVHPMHPEYEYPFHFLCGAGVAYKLSQVL-----------LDNPPNYFVSLAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V +   NR+ V +GL    +     +KAL+ +   +  I  E +G++IGP +NA GR+ 
Sbjct: 229 LVSMTDENRSIVKQGLSFLNQSCPIQIKALLNQAGYNDTINEETVGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+++D +E E LA +++  N  R+ + + + ++A A    + ++  Q   ++
Sbjct: 289 DASLSAELLMTEDEEEAEFLAEQVEHFNVERKEIVAQITDEALAIAEEKVNNGNQ--FLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ + E     GS RSIE   +      +  +
Sbjct: 347 LAKENWHEGVLGIVASKIVETYALPTLILNIDLEQNHAKGSARSIEQVSM--FEILSAHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+E      L      +   +       P   +   L  + ++I 
Sbjct: 405 DLISKFGGHHMAAGMTMEIDYIEALEQGLNDWMFKLSEHTSLEPTKHVSVKLEENDISIN 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  ++   P+G     P+    ++++  +R +     HL++         LQ+I ++  
Sbjct: 465 NIRDIQRLSPFGTDFEKPLLEIDDNEVVDVRAIGKDKNHLKLV---TGQLQLQSIFWKNG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       G+ +++ G+L +N W G++  Q  + D +
Sbjct: 522 QL----ATQIEPGQPINLLGNLQINEWNGNQSPQFIIQDIA 558


>gi|309807232|ref|ZP_07701204.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LactinV 03V1-b]
 gi|312875487|ref|ZP_07735490.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912876|ref|ZP_08175254.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           UPII 60-B]
 gi|308166370|gb|EFO68577.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LactinV 03V1-b]
 gi|311088998|gb|EFQ47439.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 2053A-b]
 gi|325477869|gb|EGC81003.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           UPII 60-B]
          Length = 761

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/573 (28%), Positives = 280/573 (48%), Gaps = 30/573 (5%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80
             ++  +    +  K+ +  I A++   R ++ D   DF LN     L  DP ++ D  K
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMKK 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
            A RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+  
Sbjct: 63  TADRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
             ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  
Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           +        C AGV + +   +           +  ++  LLDL  + T+ D+V + G  
Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319
              V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   
Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H
Sbjct: 292 LLLCDDQEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GG
Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A GL++++ +  +L + F+     +  + +       D  LN + + +     +   
Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKV 465

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           GP+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L
Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518

Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
             +    +H+    L +N W    + Q  + D 
Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|330823719|ref|YP_004387022.1| single-stranded-DNA-specific exonuclease RecJ [Alicycliphilus
           denitrificans K601]
 gi|329309091|gb|AEB83506.1| single-stranded-DNA-specific exonuclease RecJ [Alicycliphilus
           denitrificans K601]
          Length = 571

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/580 (31%), Positives = 270/580 (46%), Gaps = 30/580 (5%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
           E   RA    ++  +  ++AR+   R +    AK+ L+ ++  L+P P  L    +AA  
Sbjct: 7   EIPPRAAWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLKGAREAATL 62

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143
           +  AI   +++ I  DYD DGA + A+ +R L      +    +PDR+VDGYG   S+  
Sbjct: 63  LADAIAQDKRLAIVADYDCDGATACAVGVRGLKLLGARHVQYLVPDRVVDGYGLTASIAR 122

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
           +   +GA ++ITVD G  S + +  A   G+ V+V DHH    +   A A+VNPN+    
Sbjct: 123 RVAQQGADVLITVDNGIASVEGVAEAKALGLAVLVTDHHLPGPQLPAADAIVNPNQPGCG 182

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                +   GV+F VL+ +   LR   +        L  LL LVAL TV DVV L   NR
Sbjct: 183 FESKSMAGVGVMFYVLIQLRAELRARGRFDQASQPRLEPLLPLVALGTVADVVRLDNNNR 242

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSR 319
             V +GL   R  Q  PG++AL +     +   T  + G+ +GP INA GR+ +  LG  
Sbjct: 243 RLVAQGLKRMRAGQMQPGIQALFDAAGRKAQAATTFDFGFALGPRINAAGRLADMTLGIE 302

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRW 378
            L++DD      LA +LD +N+ RR +E  M EQA     +  D+  +    I V    +
Sbjct: 303 CLLTDDDARAAELARQLDAINRERRELEGGMREQALLLAESLFDESEEPPPAISVFDPDF 362

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA--VEEG 432
           H G+VG++A+RLK+K  RPSF  +       + +  GSGRSI GF +   +        G
Sbjct: 363 HEGVVGIVASRLKDKLHRPSFVFATSGAPGREHELKGSGRSIAGFHLRDALDLVAKRHPG 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +++K GGHAMAAG TV   +F      F + A   + A   T   + DG L        L
Sbjct: 423 VILKFGGHAMAAGCTVAAEHFAAFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAEL 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           +D L     +G G   P F     ++ S R+V     HL +    Q    + AI F    
Sbjct: 483 VDQLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSLKLLHQ-GRPVDAIWFGHTE 539

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 L         +   L VN WRG +R Q  V    
Sbjct: 540 QLPERAL---------LAFRLDVNEWRGERRVQFLVEGVQ 570


>gi|83748272|ref|ZP_00945298.1| Single-stranded-DNA-specific exonuclease recJ [Ralstonia
           solanacearum UW551]
 gi|207743546|ref|YP_002259938.1| single-stranded-dna-specific exonuclease protein [Ralstonia
           solanacearum IPO1609]
 gi|83725113|gb|EAP72265.1| Single-stranded-DNA-specific exonuclease recJ [Ralstonia
           solanacearum UW551]
 gi|206594944|emb|CAQ61871.1| single-stranded-dna-specific exonuclease protein [Ralstonia
           solanacearum IPO1609]
          Length = 565

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/574 (30%), Positives = 270/574 (47%), Gaps = 24/574 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
                  ++   H I  ++AR+L  R V+       L+  +  L+  P  L D D AAR 
Sbjct: 8   PHSAETASLLAGHGIHPVLARILAARGVARP---SELSTELTDLL-SPAQLKDIDDAARY 63

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG +P ++  
Sbjct: 64  LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              E   +++TVD G      +  A   GIDV+V DHH   ++   A  +VNPN+     
Sbjct: 124 AAREQPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262
              HL   GV+F VL+ +   LR            L +LLDLVAL TV DVV L   NR 
Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRSRGAFTPQNQPRLDALLDLVALGTVADVVRLDANNRL 243

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R  +   G+ AL       +   +  +LG+ +GP +NA GR+ + +LG   
Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ--QASVIVVEGDRW 378
           L++DD      +A +LD +N+ RR +E+ M ++A A + +   D+       I V  + W
Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSTLADMDGAGRHTIAVYNETW 363

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436
           H G++G++A+RLK+KF RP    +  +DG   GSGRSI GF +   +        G++VK
Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAGL++    F R  + F+      +   + + V + DG           +++L
Sbjct: 424 FGGHAMAAGLSLRADGFDRFVETFEAVGREWLNEALLSRVLETDGEAEPECFTPQFVELL 483

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           E+   +G G P P F      + S  V+   HL++    +  +  +AI F          
Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFEAIWFNHAE------ 534

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                G   +V   L  N + G  R Q+ +  A 
Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565


>gi|299067166|emb|CBJ38362.1| Single-stranded DNA-specific exonuclease [Ralstonia solanacearum
           CMR15]
          Length = 565

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/574 (30%), Positives = 269/574 (46%), Gaps = 24/574 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
                  ++   H I  I+AR+L  R V+       L+  +  L+P P  L   D AAR 
Sbjct: 8   PHSAETASLLAGHGIHPILARILAARGVARP---SELSTELTDLLP-PAQLKGIDDAARY 63

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG +P ++  
Sbjct: 64  LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              E   +++TVD G      +  A   GIDV+V DHH   ++   A  +VNPN+     
Sbjct: 124 AARERPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262
              HL   GV+F VL+ +   LR+           L +LLDLVAL TV DVV L   NR 
Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRRRGAFTPQNQPRLDALLDLVALGTVADVVRLDANNRL 243

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R  +   G+ AL       +   +  +LG+ +GP +NA GR+ + +LG   
Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRW 378
           L++DD      +A +LD +N+ RR +E+ M ++A   + +     D      I V  + W
Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMTILSSTLANMDSAGRHTIAVYNETW 363

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436
           H G++G++A+RLK+KF RP    +  +DG   GSGRSI GF +   +        G++VK
Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDTLDAVHKRCPGLIVK 423

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAGL++    F R  + F+      +   + + V + DG   A       +++L
Sbjct: 424 FGGHAMAAGLSLHADGFDRFVETFEAVGREWLNESLLSRVLETDGEAEAECFTPQFVELL 483

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           E+   +G G P P F      + S  V+   HL++    +  +   AI F          
Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFDAIWFNHAE------ 534

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                G   +V   L  N + G  R Q+ +  A 
Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565


>gi|259500711|ref|ZP_05743613.1| recombination protein J [Lactobacillus iners DSM 13335]
 gi|302191401|ref|ZP_07267655.1| single-stranded DNA-specific exonuclease [Lactobacillus iners AB-1]
 gi|259168095|gb|EEW52590.1| recombination protein J [Lactobacillus iners DSM 13335]
          Length = 761

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/572 (27%), Positives = 277/572 (48%), Gaps = 28/572 (4%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             ++  +    +  K+ +  I A++   R ++ D   DF        + DP ++ D  K 
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNDDESKLADPFLMHDMKKT 63

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+   
Sbjct: 64  VNRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  +
Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                   C AGV + +   +           +  ++  LLDL  + T+ D+V + G   
Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   L
Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H 
Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GGH
Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             A GL++++ +  +L + F+     +  + +       D  LN + + +     +   G
Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L 
Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519

Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
            +    +H+    L +N W    + Q  + D 
Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|300704515|ref|YP_003746118.1| single-stranded DNA-specific exonuclease [Ralstonia solanacearum
           CFBP2957]
 gi|299072179|emb|CBJ43511.1| Single-stranded DNA-specific exonuclease [Ralstonia solanacearum
           CFBP2957]
          Length = 565

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/574 (29%), Positives = 269/574 (46%), Gaps = 24/574 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
                  ++   H I  ++AR+L  R V+       L+  +  L+P P  L   D AAR 
Sbjct: 8   PHSAETASLLAGHGIHPVLARILAARGVARP---SELSTELTDLLP-PAQLKGIDDAARY 63

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG +P ++  
Sbjct: 64  LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              E   +++TVD G      +  A   GIDV+V DHH   ++   A  +VNPN+     
Sbjct: 124 AAREQPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262
              HL   GV+F VL+ +   LR            L +LLDLVAL TV DVV L   NR 
Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRSRGTFTQQNQPRLDALLDLVALGTVADVVRLDANNRL 243

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R  +   G+ AL       +   +  +LG+ +GP +NA GR+ + +LG   
Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC--DDIQQASVIVVEGDRW 378
           L++DD      +A +LD +N+ RR +E+ M ++A A + +     D      + V  + W
Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSALASMDGAGRHTVAVYNETW 363

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436
           H G++G++A+RLK+KF RP    +  +DG   GSGRSI GF +   +        G++VK
Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAGL++    F R  + F+      +   + + V + DG           +++L
Sbjct: 424 FGGHAMAAGLSLRADGFDRFVETFEAVGREWLNEALLSRVLETDGEAEPECFTPQFVELL 483

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           E+   +G G P P F      + S  V+   HL++    +  +  +AI F          
Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFEAIWFNHAE------ 534

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                G   +V   L  N + G  R Q+ +  A 
Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565


>gi|166031164|ref|ZP_02233993.1| hypothetical protein DORFOR_00850 [Dorea formicigenerans ATCC
           27755]
 gi|166029011|gb|EDR47768.1| hypothetical protein DORFOR_00850 [Dorea formicigenerans ATCC
           27755]
          Length = 580

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/587 (29%), Positives = 288/587 (49%), Gaps = 31/587 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           RWV L          AI++K  I   +A ++ NR+ +  +    +LN +I  L  D + +
Sbjct: 12  RWVLLRKGADF---EAISKKFHISPRLASLIRNRDVIGDEAINQYLNGTIAELY-DGMQM 67

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   + + I + EKI + GDYD DG  +  +++  L       +  IPDRI DGY
Sbjct: 68  KGMPQAVEILTEKIRDREKIRVIGDYDCDGINATYILLEGLEKLGAKVDSDIPDRIKDGY 127

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N  L+++   +G   IIT D G  +   ++Y    G+ +IV DHH+V  +E       
Sbjct: 128 GLNQHLIDRAHEDGIDTIITCDNGIAAAKEIEYGKALGMTIIVTDHHEVPYKENEAGRRY 187

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+V+P +         LC A V + ++  +     QD       DL  LL+ VA
Sbjct: 188 ILPPADAVVDPRQEGCEYPFKGLCGAAVAYKLVEALCEANGQD-----VADLDYLLENVA 242

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ L   NR  V +GL + +R  N GL+ALI+ + +    I A ++G+++ P +
Sbjct: 243 IATVADVMDLTEENRILVKQGLEMLKRTSNLGLRALIQCIGLEGKKIQAYHIGFILAPCL 302

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA G++  +     LL +   +E +MLA  L  LN++RR M   ++++A AKV  +  DI
Sbjct: 303 NASGKLDTAKRALALLRAKTGREADMLAGDLKALNESRRDMTDRVVDEAMAKV--EQTDI 360

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+V+     H  + GL+A R++E + RP F ++  EDG   GSGRSIE + + + +
Sbjct: 361 REDKVLVIYLPDCHESLAGLVAGRVRENYYRPVFVLTDSEDGV-KGSGRSIESYSMYEEL 419

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L K GGH MAAGL++++ N  +            +     T    ID  L  
Sbjct: 420 TGC--GDLLTKFGGHPMAAGLSLDKENVEKFKRRLNDQC--TLSEEELTEKVVIDMELPF 475

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQA 543
           +A+    I+ LE   P+G GN  PVFA     +Q ++++       + T        ++A
Sbjct: 476 AAITEHFIEELEYMEPFGKGNTKPVFAARGVVMQHMKIIGKNKNVAKATAIDAAGNRMEA 535

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I FR           +    +M +T +  +N +RG ++ Q+ +    
Sbjct: 536 ICFRDVQEFAERC--ERNNGKMSITFYPGINEFRGERQIQIVITHYR 580


>gi|323706432|ref|ZP_08117994.1| single-stranded-DNA-specific exonuclease RecJ
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534217|gb|EGB24006.1| single-stranded-DNA-specific exonuclease RecJ
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 817

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/577 (32%), Positives = 295/577 (51%), Gaps = 26/577 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + WVS   +        I  K  +   VA+ +VNR         ++LNP++  L  +P +
Sbjct: 3   YNWVSKKAKNDK-LVDEIANKFNLKTYVAQTIVNRGYDDLKKVYEYLNPTLNAL-NNPYL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   +KA   I   I  ++KI I+GDYDVDG  S +++   L     N + YIPDR+++G
Sbjct: 61  LEGIEKAVSIIKYHIGLNDKIAIYGDYDVDGITSTSILYIALKRLGANVDFYIPDRLLEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++   + G +LIITVDCG  S   +QYA   G+DVI+ DHHQV      A  +
Sbjct: 121 YGINMDAVKILCDSGTKLIITVDCGIASLKEVQYARKLGLDVIITDHHQVPDILPEANCI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP+  D       L   GV F + + +           L  + L  LD+VAL TV D+V
Sbjct: 181 VNPHIKDCAYPYRELAGVGVAFKLCLAL-----------LGDEALEFLDVVALGTVADIV 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V +GL + R   N GL+ALI         I   ++G+++ P +NA GR+  
Sbjct: 230 PLTGENRVIVKEGLKMMRNTKNKGLRALINSAGLNKRDIDTYHVGFILAPRLNAAGRLES 289

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L   LL++DD  E + +A  L+  N  R+ +E  +LE+A  +V     D+++   IV+
Sbjct: 290 AVLCVNLLVTDDPIEADRIAAYLNSENAKRQEIEKKILEEAIMQV-ENNVDLEKEKFIVL 348

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WHPG++G++++R+ E++ RPS  IS    G G GSGRSI+GF+I + + +A     
Sbjct: 349 YSENWHPGVIGIVSSRITERYHRPSILISVSG-GFGKGSGRSIKGFNIYEAIKYA--GDC 405

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH MAAGLT++            ++A   + A    P+ +I+  ++   ++    
Sbjct: 406 LINFGGHEMAAGLTIDSSQIDDFRFKLNEYAKTKLTAFDMMPIIEIETSID-DVLDCDGA 464

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
           + +    P+G+GNP P++A  N  ++ I +     H+++  E  D      + F      
Sbjct: 465 NQVSLLEPFGSGNPVPMYAIKNLVVKQISLFGDNKHIRIMVEKND-VMYNVVLFNRA--- 520

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             EF   S G  + + G + VN W G K+ ++   D 
Sbjct: 521 -CEFDKISTGAVLDIAGFVKVNEWNGEKKLEIIAKDI 556


>gi|325911499|ref|ZP_08173910.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           UPII 143-D]
 gi|325476699|gb|EGC79854.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           UPII 143-D]
          Length = 761

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 163/573 (28%), Positives = 279/573 (48%), Gaps = 30/573 (5%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80
             ++  +    +  K+ +  I A++   R ++ D   DF LN     L  DP ++ D  K
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMKK 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
              RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+  
Sbjct: 63  TVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
             ++ ++ G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  
Sbjct: 123 RYQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           +        C AGV + +   +           +  ++  LLDL  + T+ D+V + G  
Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MADNMSELLDLAMIGTIGDMVKVSGEG 231

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319
              V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   
Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H
Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GG
Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A GL++++ +  +L D F+     +  + +       D  LN + + +     +   
Sbjct: 409 HEFACGLSLKKDSLVKLRDCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKV 465

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           GP+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L
Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YL 518

Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
             +    +H+    L +N W    + Q  + D 
Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|219870535|ref|YP_002474910.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis
           SH0165]
 gi|219690739|gb|ACL31962.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis
           SH0165]
          Length = 540

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/547 (31%), Positives = 266/547 (48%), Gaps = 18/547 (3%)

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           + S++ L   P  L + ++A   ++ ++   ++I+I GD+D DGA S AL +  L     
Sbjct: 2   DLSLKGLHH-PKGLANMEQAVDLLLDSLTRQDRIVIVGDFDADGATSTALAILALRQFGF 60

Query: 122 -NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180
              +  IPDR   GYG + S+ E  + +GA  ++TVD G +S++ +     QGI V+V D
Sbjct: 61  QQVDYLIPDRFSQGYGLSLSVAEMVMAKGADFVLTVDNGISSFEGIALLKAQGIRVLVTD 120

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLL 239
           HH        A A+VNPN          L   GV+F V++ +   +R+         ++ 
Sbjct: 121 HHLPADSLPNADAMVNPNLAACTFPSKSLAGVGVIFYVMMALRAKMRELCYFKEKEPNIA 180

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENL 297
            LLDLVAL TV DVVPL   NR  V +GL   R      G++AL E        + A +L
Sbjct: 181 ELLDLVALGTVADVVPLDHNNRILVNQGLNRIRSGHCRVGIQALAEVAKRDLYALQASDL 240

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+ I P +NA GR+   +LG  LLISD+       A++LD LNQ R+  E  M  +A   
Sbjct: 241 GFAIAPRLNAAGRLENMSLGVELLISDNLALARQFALELDSLNQTRKEFEQEMKAEALVL 300

Query: 358 VLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSG 413
                      QA  IV+    WH G++G+LA+R+K++F RP  A + E D      GS 
Sbjct: 301 CAKLPTLSQQNQAQGIVLYQPDWHQGVIGILASRIKDQFHRPVIAFAQESDDSEYLKGSA 360

Query: 414 RSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           RSI G  +  ++    A  + ++VK GGHAMAAGLT+ + +  +    F +  + +    
Sbjct: 361 RSIAGLHMRDLLERIDAKYDNLIVKFGGHAMAAGLTIHQDHLAQFQTVFDETVNEVAEPE 420

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
               V   DG L A   N+A  ++L+ AGP+G   P P F     ++   +++   HL+M
Sbjct: 421 WLQGVIYTDGELLADEFNLATAELLKQAGPWGQHFPEPTFEGR-FRILQQKLLAGKHLKM 479

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
             E++      AI F V      +  +    K+      L +N +RG K  QL +     
Sbjct: 480 MVENEYGTLFDAIWFNVDVKCYPDLSI----KQATFVYKLDINEFRGGKNLQLLIEYL-- 533

Query: 592 VEGHHFA 598
           +E   F 
Sbjct: 534 LEDDQFK 540


>gi|312793694|ref|YP_004026617.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180834|gb|ADQ41004.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 798

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/577 (29%), Positives = 300/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            RWV        N  + I  +     I+ +VL NR +      + FL+PS++ L  +P +
Sbjct: 6   KRWVLKDNSNLENMDIEINGRKIKHQII-KVLNNRGIQEKGDIEKFLSPSLKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D ++A + I +AI +  +++I+GDYD DG  S  L+   L +  +  + YIP+R  DG
Sbjct: 64  LNDMNEAVKIIHEAILHKSRVLIYGDYDCDGVTSTYLLYSNLRNF-LPTSYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  +++K + +   ++ITVD G +S++ ++Y   +G  +I+ DHH+ K     A A+
Sbjct: 123 YGLNLDVLKK-LEDKFDILITVDTGISSHNEVKYLKEKGKTIIITDHHEPKEVLPEADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D +     L   GV F +L  +           +N  L   LD+VA+ T+ DV+
Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR +   GL + +   N GL+ LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRVFAKFGLKILKNTKNIGLQKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+  DS   E +A +LD  N+ R+ +E   +++A++ ++   + +++    V
Sbjct: 295 DANLAMSLLLQQDSSLAENIARRLDAENRKRQEIEEKTIKEAQSLIMKNKNILKKKIF-V 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G+VG+ ++++ EK+ RPS  ++  ++G   GSGRSI+GF++ + +    E  
Sbjct: 354 LSNSAWHAGVVGIASSKITEKYYRPSLLLTLSDEGVLKGSGRSIKGFNLFEALKSCSE-- 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   N  +L +     A +    +I  P  ++D VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLPVDNIEKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +S     + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGEDNKYYKFFTGNSTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +   ++ Q  ++D 
Sbjct: 527 LEDEDELISMKKVDIVCKLERNLFNSVRKNQFNIIDI 563


>gi|332968897|gb|EGK07944.1| single-stranded-DNA-specific exonuclease RecJ [Kingella kingae ATCC
           23330]
          Length = 570

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/582 (29%), Positives = 281/582 (48%), Gaps = 29/582 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +  +  +    A  Q    P ++A++   R+V    + D L  S+  L+P    L +C
Sbjct: 5   KQIATRPVVAEVQAALQNAGTPPLLAQLYAARHV---QSVDELGDSLSQLIPY-TQLKNC 60

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           + AA R+  AI   +KI+I  DYD DGA + ++ ++ L +     + ++P+R   GYG  
Sbjct: 61  EAAAERLATAIEQRQKILIIADYDADGATACSVGIKGLRNMGAVVDFFVPNRFEHGYGLT 120

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P L +     GAQLI+TVD G +S + +  A   GID +V DHH   S  +P   +VNPN
Sbjct: 121 PELADIAAQMGAQLILTVDNGISSQEGVARAKALGIDTVVTDHHTAGSS-VPDCIIVNPN 179

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVV 254
           +         L   GV+F VL+ +   LR             +L +LLDLVAL TV DVV
Sbjct: 180 QRGCDFPSKSLAGVGVIFYVLMALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADVV 239

Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIG 312
           PL   NR  V +GL   R    + G++AL E     +      ++G+ +GP INA GR+ 
Sbjct: 240 PLDHNNRILVSQGLKRIRAGKMSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRLD 299

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + ++G   L+SD+    + +A +L+ LNQ R+ +E  ML++  A         Q    + 
Sbjct: 300 DMSIGISCLLSDNLPYAQQIASELNQLNQTRQEIEQGMLQEVLALCPDVLPSSQT--TLS 357

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430
           V  +++H G+VG++A+RLK++F RP F  +  +DG+  GSGRSI G  +   +       
Sbjct: 358 VYHEQFHQGVVGIVASRLKDRFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAKRC 417

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++VK GGHAMAAGLT+ +  F   C  F+     +V   I +  +  DG L+ S + +
Sbjct: 418 PDMIVKFGGHAMAAGLTLRKHRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDITL 477

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
              D++     +G   P P F+     +   + +     H +   + +D    +A+ +R 
Sbjct: 478 EQADLINR-QVWGQNFPPPSFSDE-FDVVRQQFMGKEQKHKKAWLQ-KDGYEFEAMFWRC 534

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          ++ +     VN W G++  QL V    
Sbjct: 535 EDE---------LPNKIRIVYRPTVNEWNGNQELQLYVDYWE 567


>gi|262377199|ref|ZP_06070424.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           lwoffii SH145]
 gi|262307937|gb|EEY89075.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           lwoffii SH145]
          Length = 566

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/560 (30%), Positives = 273/560 (48%), Gaps = 21/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  VA +L  R V  +   +         +  P  +    +A + + QAI + +KI+I
Sbjct: 20  GVPAFVAEILARRGVESEQELE----LKLKHLLAP-TMKGLPEAIQLMDQAIDHGQKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L     N    +PDR   GYG  P++ +  F++    L+ITV
Sbjct: 75  VGDYDADGATSTALMVLALRDMGANVEYLVPDRFKYGYGLTPAIADLAFVSFTPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+D ++ A + G+ VI+ DHH        A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHDGVKQAQDHGMQVIITDHHLTTKPTPQAEAVVNPNQLGCDFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275
            +L  +    ++      +  + + LDLVAL T  DV  L   NR  V  GL   ++ Q 
Sbjct: 195 YILANLSTHRKKLG--KSSTVITNYLDLVALGTYADVASLDYNNRILVDAGLKRVQQGQC 252

Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++        + A++LG+++GP INA GR+   ++G   L++ D      LA 
Sbjct: 253 RAGISALLDIAKRDPAGLKAQDLGFVLGPRINAAGRMETMDIGIECLLAPDLATAYPLAE 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E  + + A  ++   Q D     + +++    WH G++G++A RLKE+
Sbjct: 313 QLNQLNVERRQVEGKIKQDALNELEKIQLDATALPAALIMFEPHWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + ++DG    GS RSIEG  I   +         ++   GGHA AAGLT+++
Sbjct: 373 FHRPSIVFAADQDGIHIKGSARSIEGIHIRDAIEQVAEQYPHLVSHFGGHAAAAGLTLKK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F+     +    + T     DG L ASA +I  +D+L++  P+G   P P+
Sbjct: 433 ENFAEFKQVFEVLIGAM-DEDLFTATLWTDGELPASAFHIETVDLLQNLSPWGQKFPQPI 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     K+   R +   HL++    ++ + + AIAF        + +  +R     +   
Sbjct: 492 FDG-VFKIMDYRWLKDVHLKLRVALENGQVVDAIAFNAADKYDFDPMKDTR-----LVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L  N + G+   Q+R++   
Sbjct: 546 LDKNVFNGNVSLQMRIIHLE 565


>gi|300854110|ref|YP_003779094.1| single-stranded-DNA-specific exonuclease recJ [Clostridium
           ljungdahlii DSM 13528]
 gi|300434225|gb|ADK13992.1| single-stranded-DNA-specific exonuclease recJ [Clostridium
           ljungdahlii DSM 13528]
          Length = 591

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/604 (28%), Positives = 289/604 (47%), Gaps = 44/604 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           RW+    ++      AI +   I ++VA +LVNR +      K F+NPS+R L  +PL++
Sbjct: 4   RWMLKRCKKD---VKAIAKMAGISEVVASILVNREIETQGEIKSFINPSMRDLQ-NPLLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +     I  AI   + I ++GDYDVDG  S  ++   L  C      +IPDRI +GY
Sbjct: 60  KDMESGVDIIYSAIKEKKNIAVYGDYDVDGVMSTYILYCGLLRCGAMVKYHIPDRITEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N   +EK   +G QLIIT D G ++ + ++ A    + V++ DHH +   +       
Sbjct: 120 GINIHSIEKLKEDGIQLIITCDNGISALEQIKRAMELNMQVVITDHHDIPFSDDEDGKRK 179

Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  A+++P + D       LC AGV F  + ++Y       +       L  ++  
Sbjct: 180 FLIPEADAVIDPKQEDCKYPFKKLCGAGVAFKFIQVLYDKFNIKKEEA-----LKFIEYA 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ T+CDVV LIG NR    KGL +     N G++ LI+  +     + + ++G++IGP 
Sbjct: 235 AIGTICDVVDLIGENRVIAKKGLEMLNNTENLGIRELIKETSLEDKTLNSYHIGFVIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  + L   LL+  D      LA KL  LN +R+ M    L +   KV  +  D
Sbjct: 295 INATGRLQSAALALELLLCKDPDRAHELAKKLHELNIHRQDMTINSLNKIIDKV--EKSD 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           +++  V+VV     H  I G++A RLKE++  PS  I+        GSGRSIEG+++   
Sbjct: 353 LKKDKVLVVYEKGVHESIAGIVAGRLKERYNVPSIVIT-NGKDFSKGSGRSIEGYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + ++ + GGH +AAGL++E  N  +L D   +     +      P  +ID  + 
Sbjct: 410 EELVKCKELMFQFGGHPLAAGLSIEEENIDKLRDRLNRNCK--LTDEDIIPKIRIDKQVP 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDS-ETL 541
            ++++  +I+ ++   P+G GN  PVF   N  +  +  +      L++    ++S   +
Sbjct: 468 LNSISFKMIEDIKRLEPFGKGNSTPVFGEKNVDVFRVYFIGKDKNTLKLFCRLKNSLNKI 527

Query: 542 QAIA-----------FRVYGTPLGEFLMQS--RGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
            A++           F+ YG+     ++ +  +  +M       VN ++G++  QL + D
Sbjct: 528 DALSFDGGEKFRQLIFKAYGSGAAYKILNNDFKNLKMDFIYLPSVNEYKGNRNIQLILKD 587

Query: 589 ASPV 592
               
Sbjct: 588 FRLA 591


>gi|315653454|ref|ZP_07906375.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           ATCC 55195]
 gi|315489145|gb|EFU78786.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           ATCC 55195]
          Length = 761

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/572 (27%), Positives = 278/572 (48%), Gaps = 28/572 (4%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             ++  +    +  K+ +  I A++   R ++ D   DF   +    + DP ++ D  K 
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADETKLADPFLMHDMKKT 63

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+   
Sbjct: 64  VDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  +
Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                   C AGV + +   +           +  ++  LLDL  + T+ D+V + G   
Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   L
Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H 
Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GGH
Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             A GL++++ +  +L + F+     +  + +       D  LN + + +     +   G
Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L 
Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519

Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
            +    +H+    L +N W    + Q  + D 
Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|91792111|ref|YP_561762.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           denitrificans OS217]
 gi|91714113|gb|ABE54039.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella
           denitrificans OS217]
          Length = 574

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/566 (30%), Positives = 267/566 (47%), Gaps = 21/566 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ ++   R  + D     LN     L+  P  +     AA  +  AI +++ I+I
Sbjct: 19  DMHPLLQQIFAKRGAAFDDCTLALN----QLLH-PKSMKGLAAAASIVADAIMDNKSILI 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA S  + M  L        +  IP+R   GYG +P ++     + AQL+ITV
Sbjct: 74  VGDFDADGATSTCVCMLALRMMGAKKVDYLIPNRFDYGYGLSPEIVALAYRKEAQLLITV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH        A A+VNPN+         +   GV F
Sbjct: 134 DNGISSIEGVAAAKALGMQVVVTDHHLPGKTIPDADAIVNPNQAGCEFSSKAIAGVGVAF 193

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            ++  + + LR  +          +L  LLD+VAL TV DVV     NR  V  GL   R
Sbjct: 194 YLMSALRQELRSRDWYQNQALPEPNLAELLDIVALGTVADVVAFDRNNRIMVQAGLQRVR 253

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G+ AL+E    +   I A + G+ +GP +NA GR+ E  LG   L+ +D     
Sbjct: 254 SGRCRVGITALLEVAKRTPERIVAADFGFAVGPRLNAAGRLDEMALGVETLLCEDINLAR 313

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEA-KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD LN  RR +E+ M ++A         D+ Q    I +    WH G++G+LA+R
Sbjct: 314 RMAAQLDGLNTERRELEADMQQEALKTLASITLDETQLPWGIALFQADWHQGVIGILASR 373

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447
           +K+++ RP  A +   DG   GS RSI+G  +  ++        G+++K GGHAMAAGLT
Sbjct: 374 IKDRYHRPVIAFADAGDGSIKGSARSIKGLHMRDLLEQINTQHPGMILKFGGHAMAAGLT 433

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           +   +F +    F +    ++     T     DG L    +++    +L +AGP+G    
Sbjct: 434 LAADHFDQFELAFDEAIRGLLTKEQLTGEVLSDGELAIEHMSLETAMLLRNAGPWGQHFE 493

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            PVF      L   R+V   HL+M  E+Q  S  L AIAF V      +    +  + + 
Sbjct: 494 EPVFDG-VFTLVQQRLVGEKHLKMLLETQCASLMLDAIAFNVDLQAWPD----ASVRHVR 548

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           V   L VN +RG +  QL +     V
Sbjct: 549 VAYKLDVNEFRGKQNLQLMIEHLEAV 574


>gi|329921039|ref|ZP_08277564.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           SPIN 1401G]
 gi|328935109|gb|EGG31594.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           SPIN 1401G]
          Length = 761

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/572 (27%), Positives = 278/572 (48%), Gaps = 28/572 (4%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             ++  +    +  K+ +  I A++   R ++ D   DF   +    + DP ++ D  K 
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADETKLADPFLMHDMKKT 63

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+   
Sbjct: 64  VDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  +
Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                   C AGV + +   +           +  ++  LLDL  + T+ D+V + G   
Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   L
Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H 
Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GGH
Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             A GL++++ +  +L + F+     +  + +       D  LN + + +     +   G
Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L 
Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519

Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
            +    +H+    L +N W    + Q  + D 
Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|254519459|ref|ZP_05131515.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp.
           7_2_43FAA]
 gi|226913208|gb|EEH98409.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp.
           7_2_43FAA]
          Length = 593

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/604 (27%), Positives = 285/604 (47%), Gaps = 46/604 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
            W+ +  +EG    L ++       +V R+L NR +   + A  FLN +I     D  ++
Sbjct: 4   NWILVNKKEGF---LRLSNSINENPLVLRLLANRGIDTFEEANRFLNGTINDFY-DGYLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  K    I  AI N++KI+I+GDYD DG  S  +  + L +   N + YIP+R  +GY
Sbjct: 60  ADMKKGVSIIKNAILNNKKIIIYGDYDCDGVISTTIFYKALKNVGANYSYYIPNREDEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G +   ++K   EG ++++T D G  +++ +  A   G+++++ DHH +           
Sbjct: 120 GMHSGRIKKLKEEGYEVVLTCDNGIAAFEQVDLAKELGMEIVITDHHDIPIRENDKGELK 179

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A A++NP R D      +LC AGV       +Y     D         L L+   
Sbjct: 180 ETVPSADAIINPKRSDCKYPFKNLCGAGVALKFSKCLYDEFEIDE-----EKFLDLIQFA 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           ++ATVCDVV L+  NR  V KGL +     N G++ L +        I   +LG++IGP 
Sbjct: 235 SIATVCDVVDLVDENRIIVKKGLELLNNTKNFGIQELKKSTGLSDKRIEEYHLGFVIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  ++L   LLI+DD  + + L+ +L  LN  R+ +     E+   K+  + + 
Sbjct: 295 INATGRLETADLSVELLITDDVNKAKALSNQLSELNTIRQDLTKESTEKIIEKI--ENEK 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
            ++  VIVV  D  H  I G++A R+KE++  P   ++ +      GS RSIE ++I   
Sbjct: 353 NKEEKVIVVYDDTIHESIAGIVAGRVKERYNMPCIVLT-KGKEMPKGSARSIESYNI--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              +    ++ K GGH MAAGL+++  N   L +         +      P  KID  L 
Sbjct: 410 EELSKCSELIEKFGGHPMAAGLSIKEENIIPLRNKLNNICK--LSDNDIIPTVKIDSPLG 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSET-- 540
            + +N  LI+++ES  P+G GN +P+FA  N  ++ I ++      L++ F+ + +    
Sbjct: 468 LNYLNEDLINIIESLRPFGKGNSSPLFAVKNVNIERIWLLGKEKNFLKLRFKFESNGRFL 527

Query: 541 -LQAIAFRVYGTPLGEFLMQSRGKRM-------------HVTGHLCVNYWRGSKRCQLRV 586
            +  ++F  + T   E + +   +                V  +  +N + G +  QL +
Sbjct: 528 HIDGVSFDKFETFKEEVINKYGEEEFIRACDSSYINLKADVIYYPNINEFNGKRNIQLMI 587

Query: 587 LDAS 590
            +  
Sbjct: 588 KNIR 591


>gi|58337522|ref|YP_194107.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus
           NCFM]
 gi|227904163|ref|ZP_04021968.1| recombination protein J [Lactobacillus acidophilus ATCC 4796]
 gi|58254839|gb|AAV43076.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus
           NCFM]
 gi|227868182|gb|EEJ75603.1| recombination protein J [Lactobacillus acidophilus ATCC 4796]
          Length = 757

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/578 (26%), Positives = 277/578 (47%), Gaps = 32/578 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W   + +E  +    +  K+ +  + A++   R+++ D   DF   +    + +PL++ 
Sbjct: 2   KWQKRITKELDSD---LVDKYQLSSLSAQLFALRDINTDEKLDFWFNATEENLANPLLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +KA  RI QAI N EKI I+GDYD DG  + A+M   LS    + + +IPDR  DGYG
Sbjct: 59  DMEKAVERINQAIDNGEKITIYGDYDADGITATAIMTETLSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    ++ + +G +LIITVD G T  D ++YA   G+D I+ DHH  + +   +YA+V+
Sbjct: 119 PNIERYKEIVADGTKLIITVDNGVTGIDEVKYAKENGVDTIITDHHTFQEKVPDSYAVVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRELMQ-----------DTMPELLDLAMIGTLGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLEILNQTTRPGLQALIKNAGLTLGSINETDVGFNICPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD    + +A +++ LN  R+ + + + E+  + +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDIAAQKIADQIEELNNQRKELTTDVYEKCMSIIRENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGR+  GF++   ++   +E +  
Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDVGEVKGSGRAFNGFNLFNALNPLKDE-LFT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++      L    +        +         D  L  + +    +  
Sbjct: 405 KFGGHDFACGLSMQENKIDTLRQKLESSYQVNGESESKG----YDLELPLNDLTPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+P P+F+  +  +     +     H+++T  S+   +L  + F       
Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITQFYKIGKDKNHVKLT-ASKKGGSLAIVGFN------ 513

Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590
            +FL  +    +      L +N +R     Q  +    
Sbjct: 514 KDFLNNNLLPFISKIFIQLTLNTYRKQISLQGIIEGIE 551


>gi|300691905|ref|YP_003752900.1| single-stranded DNA-specific exonuclease [Ralstonia solanacearum
           PSI07]
 gi|299078965|emb|CBJ51625.1| Single-stranded DNA-specific exonuclease [Ralstonia solanacearum
           PSI07]
          Length = 565

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/574 (29%), Positives = 269/574 (46%), Gaps = 24/574 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
                  ++   H I  ++AR+L  R V+       L+  +  L+  P  L   D AAR 
Sbjct: 8   PHSAETASLLAGHGIHPVLARILAARGVARP---SELSTELADLLA-PAQLKGIDDAARY 63

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG +P ++  
Sbjct: 64  LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              E   +++TVD G      +  A   GIDV+V DHH   ++   A  +VNPN+     
Sbjct: 124 AAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRA 262
              HL   GV+F VL+ +   LR            L +LLDLVAL TV DVV L   NR 
Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRNRGAFTLQNQPRLDALLDLVALGTVADVVRLDANNRV 243

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R  +   G+ AL       +   +  +LG+ +GP +NA GR+ + +LG   
Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ--QASVIVVEGDRW 378
           L++DD      +A +LD +N+ RR +E+ M ++A A + +    ++   +  I V  + W
Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSTLVGMEGSGSHTIAVYNETW 363

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436
           H G++G++A+RLK+KF RP    +  +DG   GSGRSI GF +   +        G++VK
Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAGL++    F    + F+      +   + + V + DG  +        +++L
Sbjct: 424 FGGHAMAAGLSLRADGFAPFVETFEAVGREWLNEALLSRVLETDGEADPECFTPQFVELL 483

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           E+   +G G P P F      + S  V+   HL++    +  +   AI F          
Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKEKHLKLQL-GRGKQRFDAIWFNHAE------ 534

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                G   +V   L  N + G  R Q+ +  A 
Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565


>gi|293610586|ref|ZP_06692886.1| SsDNA exonuclease [Acinetobacter sp. SH024]
 gi|292826930|gb|EFF85295.1| SsDNA exonuclease [Acinetobacter sp. SH024]
          Length = 566

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/559 (30%), Positives = 261/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   + A   I QAI   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKNLLAP-QLKGLETAVALIDQAIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM+  L       +  +PDR   GYG  P++ E         L+ITV
Sbjct: 75  VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ V++ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVDAAHALGMQVVITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  + NK      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNKQNKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      S + A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREASSLRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMESAYPIAR 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E  M +QA + + + Q         +++  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDVPQALILFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +    E+    +   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    +       DG L ASA+ +  +D +E  GP+G     P 
Sbjct: 433 ENFEAFKTAFTNCIAAM-EESLFQATLWTDGELPASALQLNTLDWIEQLGPWGQKFSFPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVVDYRWLKETHLKLKLAL-DQYSFDAIAFNAA----GRFEFDPMRDYVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNAFNGNVNLQLRIIHL 564


>gi|289578224|ref|YP_003476851.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           italicus Ab9]
 gi|289527937|gb|ADD02289.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           italicus Ab9]
          Length = 815

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/577 (30%), Positives = 292/577 (50%), Gaps = 23/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  I + + +  I+A +L +R +++   K FLNP ++ L   P +L
Sbjct: 9   YRWILKESK-NSQLSQEIQKTYGLSKIIADMLASR-LNLHEVKSFLNPDLKDLH-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I + + I I+GDYDVDG  + A++   L       + YIP+R+V+GY
Sbjct: 66  RGIKEAKELIQQHIASKDLITIYGDYDVDGITATAILYLTLKKLGAKLDYYIPERLVEGY 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LI++VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 126 GINEEAIDKIAERGTKLIVSVDCGITSVKEVEKAKILGIDVIITDHHSIPKEIPQADVVI 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+          L   GV F +   +              +    LD+V++ T+ D+VP
Sbjct: 186 NPHLPGIEYPFCDLAGVGVAFKLSQALI-----------GEEAHKFLDIVSIGTIADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKALI+     +  I   ++G+++ P +NA GR+  +
Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLENVEIDEYHVGFILAPRLNAAGRLKSA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS   +E+E +A  L+  N NR+ +E+ +L+QA  KV  +  D+ +  VIV+ 
Sbjct: 295 EAAVRLLISHSKEEVEKIAEYLNQENLNRQQIENQILQQAIKKV-EETVDLNREKVIVLW 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WHPG++G++A+R+ E+F RPS  IS  E+ +G GSGRSIEGF++ K + +   +  L
Sbjct: 354 DENWHPGVIGIVASRITERFHRPSILISLGEE-EGKGSGRSIEGFNLYKALEYC--KDYL 410

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  KI+  +    ++I +  
Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKAKINEYADTVLSELDLIPSLKIEAKVKNEKIDIEIAK 470

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  I  +N    +     +     + + F        
Sbjct: 471 QVQKLKPFGSNNPRPNFLFEGLTVTKIFDLNSGRHKKIIAQKGKFVYELMLFDTAEKRND 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  G  + V G + +N W G +   + V D   
Sbjct: 531 ----IKIGDIIDVVGSVEINTWNGIESVIINVKDLRV 563


>gi|297544505|ref|YP_003676807.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842280|gb|ADH60796.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 815

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/577 (30%), Positives = 292/577 (50%), Gaps = 23/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  I + + +  I+A +L +R +++   K FLNP ++ L   P +L
Sbjct: 9   YRWILKESK-NSQLSQEIQKTYGLSKIIADMLASR-LNLHEVKSFLNPDLKDLH-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   I Q I + + I I+GDYDVDG  + A++   L       + YIP+R+V+GY
Sbjct: 66  RGIKEAKELIQQHIASKDLITIYGDYDVDGITATAILYLTLKKLGAKLDYYIPERLVEGY 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++K    G +LI++VDCG TS   ++ A   GIDVI+ DHH +  E   A  ++
Sbjct: 126 GINEEAIDKIAERGTKLIVSVDCGITSVKEVEKAKILGIDVIITDHHSIPKEIPQADVVI 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP+          L   GV F +   +              +    LD+V++ T+ D+VP
Sbjct: 186 NPHLPGIEYPFCDLAGVGVAFKLSQALI-----------GEEAHKFLDIVSIGTIADIVP 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314
           L+G NR  V +GL       N GLKALI+     +  I   ++G+++ P +NA GR+  +
Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLENVEIDEYHVGFILAPRLNAAGRLKSA 294

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               RLLIS   +E+E +A  L+  N NR+ +E+ +L+QA  KV  +  D+ +  VIV+ 
Sbjct: 295 EAAVRLLISHSKEEVEKIAEYLNQENLNRQQIENQILQQAIKKV-EETVDLNREKVIVLW 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WHPG++G++A+R+ E+F RPS  IS  E+ +G GSGRSIEGF++ K + +   +  L
Sbjct: 354 DENWHPGVIGIVASRITERFHRPSILISLGEE-EGKGSGRSIEGFNLYKALEYC--KDYL 410

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGH MAAG+ +E+ N         ++A  ++  L   P  KI+  +    ++I +  
Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKAKINEYADTVLSELDLIPSLKIEAKVKNEKIDIEIAK 470

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            ++   P+G+ NP P F F    +  I  +N    +     +     + + F        
Sbjct: 471 QVQKLKPFGSNNPRPNFLFEGLTVTKIFDLNSGRHKKIIAQKGKFVYELMLFDTAEKRND 530

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  G  + V G + +N W G +   + V D   
Sbjct: 531 ----IKIGDIIDVVGSVEINTWNGIESVIINVKDLRV 563


>gi|312873985|ref|ZP_07734021.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 2052A-d]
 gi|311090534|gb|EFQ48942.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 2052A-d]
          Length = 761

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 163/573 (28%), Positives = 278/573 (48%), Gaps = 30/573 (5%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80
             ++  +    +  K+ +  I A++   R ++ D   DF LN     L  DP  + D  K
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFFMHDMKK 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
              RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+  
Sbjct: 63  TVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
             ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  
Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           +        C AGV + +   +           +  ++  LLDL  + T+ D+V + G  
Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319
              V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   
Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H
Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GG
Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A GL++++ +  +L + F+     +  + +       D  LN + + +     +   
Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKV 465

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           GP+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L
Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518

Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
             +    +H+    L +N W    + Q  + D 
Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|220929372|ref|YP_002506281.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           cellulolyticum H10]
 gi|219999700|gb|ACL76301.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           cellulolyticum H10]
          Length = 576

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/591 (29%), Positives = 278/591 (47%), Gaps = 32/591 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W+    +        ++++  I +++ R++VNR +  ID A+ F+       + DP  
Sbjct: 2   QKWILRNPKFDF---KKMSKELGISELLCRIIVNRGIKDIDNARKFIKAD-NHGLYDPRQ 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  K    I + I N++KI I GDYDVDG  S  ++ +  + C    +  IP RI+DG
Sbjct: 58  MKDLVKGVSIIQEKIKNNKKIRIIGDYDVDGVVSTYILYKAFARCGAVVDYAIPHRILDG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N SL+EK +N+G   IIT D G  + + +QYA   G+ VIV DHH V      A A+
Sbjct: 118 YGINNSLIEKALNDGIDTIITCDNGIAAKEQIQYARESGMTVIVTDHHDVPDTIPEADAI 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  + D       LC AGV F  + ++Y  +          +     + VA+ATVCDVV
Sbjct: 178 IDMKQPDCQYPFKLLCGAGVAFKFIQVLYEEM-----CIPREEESEFYEFVAIATVCDVV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313
            L   NR  V +GL V     N GL AL+++  I    I+  +LG++IGP INA GR+  
Sbjct: 233 DLTDENRILVRQGLNVISDTKNIGLCALLQKTGILGKNISVYHLGFIIGPCINASGRLDW 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +  G  LL++DD +E   LA +L  LN  R+ M    +E     +  +   ++   V VV
Sbjct: 293 AMKGLELLLTDDEKEAMALATELYELNNERKHMTVKGVEDTIETI--ENSSLKSDRVFVV 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
                H  I G++A +++E++  P+F ++  E+    GSGRSIE +++ + +S   E  +
Sbjct: 351 YKPDIHESIAGIIAGKVRERYNVPTFILTSGENCV-KGSGRSIEEYNMFEELSKCKE--L 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             K GGH MAAG +++      L +         +          ID  +  SA+NI   
Sbjct: 408 FTKFGGHPMAAGFSLDADKVDILRERINSI--TTLTDDDLIAKVYIDAHIPLSAINIRTA 465

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAF------ 546
           + L    PYG GN  P+FA  N  ++   V       +    Q   + +  I F      
Sbjct: 466 EELNYLEPYGKGNSKPLFAEKNISIKRAGVFGNERKVLKLRLQGGTSFIDCIYFGDIDEF 525

Query: 547 ------RVYGTPLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 R   T L         K ++ +  ++ +N + G K  Q+ +    
Sbjct: 526 DAYVSERFGNTELQNMYKGRTNKIKLDMIFNIEINEYNGYKNVQVVLQYYR 576


>gi|197303670|ref|ZP_03168707.1| hypothetical protein RUMLAC_02397 [Ruminococcus lactaris ATCC
           29176]
 gi|197297190|gb|EDY31753.1| hypothetical protein RUMLAC_02397 [Ruminococcus lactaris ATCC
           29176]
          Length = 570

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/584 (28%), Positives = 284/584 (48%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W   + +   N    I +K+ +  ++AR++ NR V + +    +LN +   L  D  ++
Sbjct: 3   KWFINMKKADFN---GIARKYGVSTVIARIMRNREVRTDEEINLYLNGTPEDLY-DGRLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D + A   + + I   +KI I GDYD+DG  S  ++ + L     + +  IP RI DGY
Sbjct: 59  KDMECAVSILKEKIAEEKKIRIIGDYDIDGVNSTYILQKGLELAGADVDTDIPHRIKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190
           G N +L+++   +G   I+T D G  + + + Y   +G+ VIV DHH+VK +E       
Sbjct: 119 GLNRALVDRAYQDGVDTILTCDNGIAAIEEIAYGKEKGMTVIVTDHHEVKFKEENGVRIY 178

Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+++P++ D       LC AGV + ++ ++   L  D           L++ VA
Sbjct: 179 QIPAADAVIDPHQKDCNYPYKELCGAGVAYKLVRVLLEELEMDPAKAEY-----LIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +AT+ DVV L G NR +V  GL + ++  N GLKAL E   I    +   ++G++IGP I
Sbjct: 234 IATIGDVVNLTGENRIFVRTGLEMLKKTKNEGLKALFECTGIDVENLNTYHIGFVIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +   +E  M+A  L  LN++R+ M    +E+A   +  +   +
Sbjct: 294 NACGRLDTAKRALELLNAPGRREAVMMAEDLKALNESRKEMTEKGVERAVEMI--ETSAL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+VV     H  I G++A RLKE++ RP+F ++  E+G   GSGRSIE +D+   +
Sbjct: 352 KEDCVLVVYLPDCHESIAGIIAGRLKERYYRPTFVLTKTENG-AKGSGRSIEAYDMFAEM 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +   E  +  + GGH +AAGL++     G       + A   +          ID  L  
Sbjct: 411 NRCAE--LFTRFGGHKLAAGLSLPEEKIGLFRKKINELA--QLTEEDMQERVSIDLCLPF 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             ++  LI  L+   P+G GN  P FA  N  +   R+       L+    ++    +  
Sbjct: 467 EYIDENLIAELKRLEPFGMGNEKPKFAERNLSVIDPRIFGKNRNVLKCRLRNERGMQMDG 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           I F      L    +  + K M +T +  +N + G +  QL ++
Sbjct: 527 IYFGDVEDCLK---VMEQRKVMPLTFYPKINEYMGKRSIQLEIV 567


>gi|116872954|ref|YP_849735.1| single-stranded-DNA-specific exonuclease RecJ [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741832|emb|CAK20956.1| single-stranded-DNA-specific exonuclease RecJ [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 783

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/593 (29%), Positives = 284/593 (47%), Gaps = 30/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A+ + ++  I   +A++L+ R ++       F +P       DP
Sbjct: 4   SKYLWNIEEVAED--KAIHLAEQLKIALPLAKLLLKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLLAEMDLAVARIKEAIKLNEQILVYGDYDADGVTSIAVLMKTLKHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +    +G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIPAFDMAKTQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAI 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLAHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLREGANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMETIEAK---ESLGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS+E F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGVYNRPAIVLGIDPVTGVAKGSGRSVEAFHLYEA--LDKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    QK A   +      P  KI+  L  + +++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPADNLAELDTLLQKEAS-YLSEADFRPSLKIEEKLKLTDISV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF-ESQDSETLQAIAFR 547
           + I  LE   P+G  NP P+F      L+  + +     HL+    E +    L AI F 
Sbjct: 464 SFITQLEKLAPFGMDNPKPIFLLEKMNLKGTKRIGADKTHLKTLLQEDESEVALDAIGFG 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 524 VGDL----VEKISPSAAVDVVGELSINEWNNIKKPQLRLMDMDVPHWQLFDVR 572


>gi|30248041|ref|NP_840111.1| recJ: single-stranded-DNA-specific exonuclease [Nitrosomonas
           europaea ATCC 19718]
 gi|30179926|emb|CAD83921.1| recJ: single-stranded-DNA-specific exonuclease [Nitrosomonas
           europaea ATCC 19718]
          Length = 587

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/586 (27%), Positives = 269/586 (45%), Gaps = 36/586 (6%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
           E    A  I   H  P ++AR+   R ++       L  +    M     L +  + A  
Sbjct: 8   EFPAHAYEILSAHGFPSVLARIFAARGINHPEQ---LETTFAR-MASFEQLKNIQRIAVL 63

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           +  AI   +++++  DYD DGA + A+ +R L          +P+R   GYG  P ++  
Sbjct: 64  LADAIAAKKRLLVIADYDTDGATACAVALRALRQFGAMVEYLVPNRFEYGYGLTPEIVRL 123

Query: 145 FINE--GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
             ++     ++ITVD G  S + ++ A   G+ V + DHH        A  +VNPN+   
Sbjct: 124 AADQVPPPDILITVDNGIASVEGVEEANRLGMQVFITDHHLPGDRLPDAAVIVNPNQPGC 183

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGL 259
                H+   GV+F V++ +   LR+ +         +L SLLDLVAL TV DVV L G 
Sbjct: 184 SFPDKHIAGVGVIFYVMLALRAELRERSAFTATGKEPNLASLLDLVALGTVADVVRLEGT 243

Query: 260 NRAYVVKGLMVARRQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLG 317
           NR  V +GL   R      G+ AL +        +T   LG+++ P +NA GR+ + +LG
Sbjct: 244 NRILVQQGLQRIRNGYCCAGIHALFKAAGRDFSRVTTYELGFILAPRLNAAGRLDDMSLG 303

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI------ 371
              L+++D      LA +LD LN+ RR +ES M ++A  K+    D + Q+         
Sbjct: 304 IECLLTEDESHALRLASELDELNRQRREIESGMRDEAMDKLDDVIDLLNQSDTPADNGKQ 363

Query: 372 -----VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
                 +    WH G++GL+A+R+K++  RP    +   +G+  GSGRSI G  +   + 
Sbjct: 364 SVYSLCLYDPAWHQGVIGLIASRVKDRLHRPVIIFAQGNEGEIKGSGRSIPGLHLRDALD 423

Query: 427 FA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                  G++VK GGHAMAAGLTV   +F +    F++ A +++       V + DG L 
Sbjct: 424 LVAKRYPGLIVKFGGHAMAAGLTVYEQHFEQFRTAFEQVAQSLLTPADLIQVIETDGELA 483

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQA 543
            + + + L   L +   +G G P P F     ++++ R+V   HL++       ++    
Sbjct: 484 ETDLTLELAQYLTN-QVWGQGFPEPSFNGC-FRVENQRIVGEKHLKLKLRKTGAAQVYDG 541

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           I F         F  +     +     + +N + GS R QL +   
Sbjct: 542 ILF---------FHTERLPTEIDAVYRVQINEYNGSTRMQLLLEHW 578


>gi|146295896|ref|YP_001179667.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409472|gb|ABP66476.1| exonuclease RecJ [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 803

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/577 (30%), Positives = 296/577 (51%), Gaps = 22/577 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RWV    +   +  + I  +  I   + +VL NR +   D  + FL P+I+ L  +P +
Sbjct: 6   KRWVLKECENFDDFDIQIDGR-KIRPQIIKVLKNRGIVQKDDIEKFLAPAIKNLH-NPFL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A   +  AI + ++++I+GDYD DG  S  L+   L    +  + YIP+R  DG
Sbjct: 64  LNDMKEAINIVHNAILHKKRVLIYGDYDCDGVTSTYLLYSNLKKF-LPTSYYIPNRFKDG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  ++++   +   ++ITVD G ++ + ++Y   +G  VIV DHH+ K +   A A+
Sbjct: 123 YGLNLDILKRL-EDTFDILITVDTGISAINEIEYLKQKGKIVIVTDHHEPKDKLPIADAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D       L   GV F +L  +           L   L   LD+VA+ T+ DV+
Sbjct: 182 INPKRRDSTYPFRDLAGVGVAFKLLHAL-------KLSGLEIKLSKYLDIVAIGTIADVM 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312
           PL+  NR +   GL + +   N GLK LIE         +   ++ ++IGP +NA GRI 
Sbjct: 235 PLVDENRIFAKFGLKLLKYTRNIGLKKLIEVAGLSSKEELKPFDVSFIIGPRLNAAGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++NL   LL+SD   E E +A +LD  N+ R+ +E   +++A  K++T   DI +  + V
Sbjct: 295 DANLAMSLLLSDSLVEAEKIARRLDEENRKRQEIEEKTIKEA-QKIITLNKDILRKKIFV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WHPG+VG+ ++++ EK+ RPS   +F ++G   GSGRSI+GF++ + +       
Sbjct: 354 LSSQSWHPGVVGIASSKITEKYYRPSLLFTFTDEGILKGSGRSIKGFNLFEALKNC--SD 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL+K GGH  AAGL++   NF +L +     A      +I  P  +ID VL+ + ++  L
Sbjct: 412 ILLKFGGHEHAAGLSLVSDNFDKLDEILNAIAQE-YHFMIFKPAVEIDLVLSLNEIDDEL 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           ID +    P+G GNP P F   N  +++ R +   +    F + +      + F    + 
Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNIIVENFRFMGEDNKYYKFFTGNGTKYDVVCF----SN 526

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L +       K++ +   L  N +  ++R Q  ++D 
Sbjct: 527 LEDEDELVTMKKVDIVCKLEKNIFNSTRRNQFNLIDI 563


>gi|114330162|ref|YP_746384.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosomonas
           eutropha C91]
 gi|114307176|gb|ABI58419.1| exonuclease RecJ [Nitrosomonas eutropha C91]
          Length = 589

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/575 (28%), Positives = 269/575 (46%), Gaps = 36/575 (6%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
            H +P ++AR+   R +      + L+ +    M     L +  + A  +  AI   +++
Sbjct: 21  AHGLPSVLARIFAARGI---EKPNQLDTTFSH-MASFQQLKNIRQIAVLLADAIAAKKRL 76

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ--LI 153
           ++  DYD DGA + A+ +R LS      +  +P+R   GYG  P +++   N      ++
Sbjct: 77  LVIADYDTDGATACAVALRALSQFGAVVDYLVPNRFEYGYGLTPEIVQLAANCNPPPAIL 136

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           ITVD G  S + +  A   G+ V + DHH    +   A  +VNPN+        H+   G
Sbjct: 137 ITVDNGIASVEGVAEANRLGMQVFITDHHLPGDQLPEAAVIVNPNQPGCDFPDKHIAGVG 196

Query: 214 VVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
           V+F V++ +   LR+           +L +LLDLVAL TV DVV L G NR  V +GL  
Sbjct: 197 VIFYVMLALRAELRERGSFIATGKEPNLANLLDLVALGTVADVVRLEGTNRILVQQGLQR 256

Query: 271 ARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            R      G+ AL +        +T   LG+++ P +NA GR+ + +LG   L+++D   
Sbjct: 257 IRSGHCCAGIHALFKVAGRDFSRVTTYELGFILAPRLNAAGRLDDMSLGIECLLAEDESR 316

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVL------TQCDDIQQASVI-----VVEGDR 377
              LA +LD LN+ RR +E+ M ++A +K+        Q D      V       +    
Sbjct: 317 ALHLASELDELNRQRREIEAGMQDEAMSKLEGVINMLDQFDAPANNRVHPVYSLCLYDSD 376

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILV 435
           WH G++GL+A+R+K++  RP    +   +G+  GSGRSI G  +   +        G++V
Sbjct: 377 WHQGVIGLIASRIKDRLHRPVIVFAQGNNGEIKGSGRSIPGLHLRDALDLVTKRHPGLIV 436

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGHAMAAGLTV   +F +    F++ A +++  +    V + DG L    + + L   
Sbjct: 437 KFGGHAMAAGLTVHAQHFEQFRAVFEQVAQSLLTPVDLIQVIETDGELEERDLTLELAQY 496

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL-QAIAFRVYGTPLG 554
           L +   +G G P P F     ++++ R+V   HL++      +  +   I F        
Sbjct: 497 LTN-QVWGQGFPEPSFNGR-FRVENQRIVGEKHLKLKLRKAGASRIYDGILF-------- 546

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            F  +     +     + +N + GS R QL +   
Sbjct: 547 -FHTERLPAEIDAVYRVQLNEYNGSTRMQLLLEHW 580


>gi|77164696|ref|YP_343221.1| RecJ exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|76883010|gb|ABA57691.1| exonuclease RecJ [Nitrosococcus oceani ATCC 19707]
          Length = 574

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/565 (30%), Positives = 272/565 (48%), Gaps = 25/565 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I  I+ RV   R +    A D L+ ++  L P P +L++   A   +++A+    +I++ 
Sbjct: 20  IHPILRRVYGARGI---KAPDELDYTLERL-PSPWLLSNIKMAVTLLMEALVRDWRILVV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITV 156
            D+D DGA S A+ +R L        +  +P+R + GYG  P+++ E        LIITV
Sbjct: 76  ADFDADGATSCAVAVRALRLMGAHKVDYLVPNRFIHGYGLTPAIVAEAMARGQPDLIITV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S   +Q A    I V++ DHH        A A+VNPN  +D      L   GV+F
Sbjct: 136 DNGISSLAGVQAARAANIRVLITDHHLPGISLPAANAIVNPNLPNDPFPSTCLAGVGVIF 195

Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            V++ +   LR+             L  LLDLVAL TV DVVPL  +NR  V +GL   R
Sbjct: 196 YVMLALRAHLREQGWFIRRDEQEPALAPLLDLVALGTVADVVPLDQINRILVAQGLARIR 255

Query: 273 RQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +          +         +T  +LG+ +GP +NA GR+ + +LG   L++D  +  +
Sbjct: 256 QSRCCAGIQALVACARRPLETLTTSDLGFAVGPRLNAAGRLEDMSLGIACLLTDSLELAQ 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV--IVVEGDRWHPGIVGLLAA 388
             A +LD LN+ RR +ES M EQA   +       ++ +     +  + WH G++GLLAA
Sbjct: 316 QQANQLDGLNRERREIESTMQEQAVTHLENLVFQGEERAPLGYCLFDESWHQGVIGLLAA 375

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           R++E+  RP  A +  +  +  GS RSI G  I   +         +L K GGHAMAAGL
Sbjct: 376 RIRERVYRPVIAFAPHDSEELKGSARSIPGLHIRDALDRVATCYPDLLTKFGGHAMAAGL 435

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++ R +       F +    ++       V   DG  +    ++ + + L + GP+G G 
Sbjct: 436 SLRRGHLEPFRVAFLEVLETLLDKEALEDVILSDG--SLEQWDLEMAETLRNGGPWGQGF 493

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P P+F     ++   R+V  AHL++T  + D  + L+ IAFR            + G ++
Sbjct: 494 PEPLFDG-VFRVAGFRIVGEAHLKLTLTTLDGRQQLEGIAFRCLPPD-----GFALGIKI 547

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590
            +   L VN +RGS+  QL V    
Sbjct: 548 RLAYRLDVNIYRGSRTAQLMVEHLE 572


>gi|193734240|gb|ACF19890.1| RecJ [Kingella kingae]
          Length = 570

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/582 (29%), Positives = 281/582 (48%), Gaps = 29/582 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +  +  +    A  Q    P ++A++   R+V    + D L  S+  L+P    L +C
Sbjct: 5   KQIATRPVVAEVQAALQNAGTPPLLAQLYAARHV---QSADELGDSLSQLIPY-TQLKNC 60

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           + AA+R+  AI   +KI+I  DYD DGA + ++ ++ L +     + ++P+R   GYG  
Sbjct: 61  EAAAQRLATAIEQRQKILIIADYDADGATACSVGIKGLRNMGAVVDFFVPNRFEHGYGLT 120

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P L +     GAQLI+TVD G +S + +  A   GID +V DHH   S   P   +VNPN
Sbjct: 121 PELADIAAQMGAQLILTVDNGISSQEGVARAKALGIDTVVTDHHTAGSSI-PDCIIVNPN 179

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVV 254
           +         L   GV+F VL+ +   LR             +L +LLDLVAL TV DVV
Sbjct: 180 QRGCDFPSKSLAGVGVIFYVLMALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADVV 239

Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIG 312
           PL   NR  V +GL   R    + G++AL E     +      ++G+ +GP INA GR+ 
Sbjct: 240 PLDHNNRILVSQGLKRIRAGKMSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRLD 299

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + ++G   L+SD+    + +A +L+ LNQ R+ +E  ML++  A         Q    + 
Sbjct: 300 DMSIGISCLLSDNLPYAQQIASELNQLNQTRQEIEQGMLQEVLALCPNVLPSSQT--TLS 357

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430
           V  +++H G+VG++A+RLK++F RP F  +  +DG+  GSGRSI G  +   +       
Sbjct: 358 VYHEQFHQGVVGIVASRLKDRFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAKRC 417

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++VK GGHAMAAGLT+ +  F   C  F+     +V   I +  +  DG L+ S + +
Sbjct: 418 PDMIVKFGGHAMAAGLTLRKHRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDITL 477

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548
              D++     +G   P P F+     +   + +     H +   + +D    +A+ +R 
Sbjct: 478 EQADLISR-QVWGQNFPPPSFSDE-FDVVRQQFMGKEQKHKKAWLQ-KDGYEFEAMFWRC 534

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          ++ +     VN W G++  QL V    
Sbjct: 535 EDE---------LPNKIRIVYRPTVNEWNGNQELQLYVDYWE 567


>gi|217076672|ref|YP_002334388.1| single-stranded DNA-specific exonuclease [Thermosipho africanus
           TCF52B]
 gi|217036525|gb|ACJ75047.1| single-stranded DNA-specific exonuclease [Thermosipho africanus
           TCF52B]
          Length = 975

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/561 (28%), Positives = 300/561 (53%), Gaps = 19/561 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           +W           A  I+++ ++P + +++LV R  +  +  + FL PS + L   P +L
Sbjct: 2   KWELKKF--NKELAQKISEELSLPFLTSQLLVTRGYTDFEEIEKFLYPSKKHLR-SPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA R +++A      + ++GDYDVDG   VA ++ FLS      + YIP+R+ +GY
Sbjct: 59  KDMDKAVRYLLEAREKKLPVFVYGDYDVDGITGVATLVTFLSKYGWKVDYYIPNRLDEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G  P ++E++  +G +++++VDCG TS++A++ A   G+ VI+ DHH +K +   A+A+V
Sbjct: 119 GIQPQVVEEYFKKGYRVLLSVDCGITSFEAVEKARELGMYVIITDHHTIKDKIPEAHAVV 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D+          GV + ++  + + L          ++  +LD+VAL T+ D+V 
Sbjct: 179 DPKREDETYPFRDFAGVGVAYKLISAVAQELGIPG-----DEVDEVLDIVALGTIADMVD 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L+  NR  V +GL         GL  L++++NI++ I+++++GY + P +NA GR+  + 
Sbjct: 234 LVDENRYIVKEGLKRLNATNRIGLLQLMKKLNITN-ISSQDIGYRLAPKLNAAGRLYSAE 292

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              +L+++D+    E LA  L   N  R+ +E+ + ++A  K+  +   I+   +++V G
Sbjct: 293 DAYKLIMTDNISSAEQLAEMLMGYNFTRQEIENKIFKEAIEKI--EHSKIKDLPILIVSG 350

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           D WH G++G++A +L +K+ +PS  +S  E+G G GSGRS++G +I  +   +       
Sbjct: 351 DNWHAGVLGIVATKLVQKYNKPSLVVS-LENGIGRGSGRSVDGVNI--LEVLSDFASYFE 407

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH MA G +++      L +   +   N    + +    +ID +L    +N  +ID 
Sbjct: 408 EFGGHPMAIGFSIKNEKIPELIEAISEKFGNTFFEVDSK--IEIDSILEVDDINDEIIDS 465

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G GNP PVF   +  +  IR      ++++M  + ++ +T++ I F +     
Sbjct: 466 LRYLEPFGHGNPEPVFLIKDSIVDRIRFFGNTNSNVRMILKGKNKQTVEGIGFGLRKNYY 525

Query: 554 GEFLMQSRGKRMHVTGHLCVN 574
               +Q+    + V  ++  N
Sbjct: 526 DIPAIQAFLTSLDVVANIRKN 546


>gi|260550206|ref|ZP_05824419.1| ssDNA exonuclease [Acinetobacter sp. RUH2624]
 gi|260406734|gb|EEX00214.1| ssDNA exonuclease [Acinetobacter sp. RUH2624]
          Length = 566

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/559 (30%), Positives = 259/559 (46%), Gaps = 21/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +         +  P  L   D A   + Q I   +KI+I
Sbjct: 20  GVPPFIAEILARRGVQSEQELE----LKLKYLLAPE-LKGLDAAVALMDQVIDEQKKIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E  +      L+ITV
Sbjct: 75  VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAYHTYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHTGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V  G+    + Q 
Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + I A++LG+++GP INA GR+    +G   L++D  +    +A 
Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADSMETAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN +RR +E  M +QA + +       Q     +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNQLNIDRRQVEGEMKQQALSALDNLQLSQQDIPPALVLFEENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RP+   + +EDG    GS RSI+G  I   +         ++   GGHA AAGLT+ +
Sbjct: 373 FHRPTIVFAPDEDGVHIKGSARSIDGVHIRDTIEQVAEQYPELVSHFGGHAAAAGLTIRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF      F      +    I       DG L  SA+ +  ++ +E  GP+G   P P 
Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLNTLNWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   + K+   R +   HL++     D  +  AIAF       G F        +H+   
Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  N + G+   QLR++  
Sbjct: 546 IDRNVFNGNVSLQLRIVYL 564


>gi|325267464|ref|ZP_08134120.1| single-stranded-DNA-specific exonuclease RecJ [Kingella
           denitrificans ATCC 33394]
 gi|324981105|gb|EGC16761.1| single-stranded-DNA-specific exonuclease RecJ [Kingella
           denitrificans ATCC 33394]
          Length = 569

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/578 (31%), Positives = 282/578 (48%), Gaps = 28/578 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
           E  N      Q+   P ++A++  +R V        L+ ++  L+P    LT+C  AA+R
Sbjct: 11  EIDNAIQQALQEKGAPPLLAQLYASRQVHSADE---LDDALNRLIPY-TQLTNCVAAAQR 66

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           + QAI  +EKI+I  DYD DGA + ++ ++ L       + ++P+R   GYG  P L + 
Sbjct: 67  LAQAIEQNEKILIIADYDADGATACSVGIKGLQSMGATVDFFVPNRFEHGYGLTPELADI 126

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
             + GAQLI+TVD G +S+D ++ A   GID IV DHH      +P   +VNPN+     
Sbjct: 127 AHDLGAQLILTVDNGISSHDGVERARQWGIDTIVTDHHHAG-SHVPNCLIVNPNQRGCTF 185

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNR 261
              +L   GV+F VL+ +   LRQ            L  LLDLVAL TV DVVPL   NR
Sbjct: 186 PSKNLAGVGVIFYVLIALRAELRQRGWFHAGLPEPKLDLLLDLVALGTVADVVPLDHNNR 245

Query: 262 AYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
             V +GL   R             E    +      ++G+ +GP INA GR+ + +LG  
Sbjct: 246 ILVSQGLKRIRAGKMSFGIQALFQEARRDARKAQPFDMGFALGPRINAAGRLDDMSLGIH 305

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
            L+SD+    + +A +L+ LNQ R+ +E  ML+   A   ++  + Q    + V  + +H
Sbjct: 306 CLLSDNLDSAQQMAHELNQLNQTRQEIEQDMLQNVLALCPSELPEQQT--TLAVFHEDFH 363

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKG 437
            G+VG++A+RLKE+F RP+F  +  +DG+  GSGRSI G  +  ++         +++K 
Sbjct: 364 QGVVGIVASRLKERFYRPTFVFAPSDDGEIRGSGRSITGVHLRDVLDSVAKRCPDMIIKF 423

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHAMAAGLT+    F   C  F++     V        +  DG L+AS + +    +L 
Sbjct: 424 GGHAMAAGLTMHAHRFEEFCTIFEQVVREWVDEDTLAQTYLTDGNLHASDITLEHAHLLN 483

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
               +G G P P F      +   + +     H +     ++    +A+ +R        
Sbjct: 484 -GQVWGQGFPAPSFHDE-FSVLRQQPMGADKKHTKAWLR-KEGREFEAMFWRCD------ 534

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
               S  +++H+     VN WRG++  QL V    PV 
Sbjct: 535 ---VSLPEKIHIVYRPTVNEWRGNEELQLYVDYWEPVT 569


>gi|295693123|ref|YP_003601733.1| single-stranded-DNA-specific exonuclease recj [Lactobacillus
           crispatus ST1]
 gi|295031229|emb|CBL50708.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           crispatus ST1]
          Length = 757

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/570 (28%), Positives = 269/570 (47%), Gaps = 30/570 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     QE    A  + +K+ +  I A +   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQERTAQE---LAPDLVEKYQLSPIAATLFALRGINTDEKLDFWFNATEDNLADPALMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   LS    + + +IPDR  DGYG
Sbjct: 59  DMDKAIERINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN +  +  + +G +LIITVD G T  + ++YA    +DVI+ DHH  + E+  AYA V+
Sbjct: 119 PNLARYQDIVADGTKLIITVDNGVTGIEEVKYAQEHSVDVILTDHHTFQEEKPAAYATVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLEMLNQTERPGLRALIKNAGLTLGGINETDVGFNIAPRLNAVGRLDNAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A +++ LN  R+ + + + E+    +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADRIEELNNQRKELTTQVYEKCMDLIQKNSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++    G+  GSGRS  GF++   ++  +++  L 
Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNAAGEIKGSGRSFTGFNLFNALNP-IKDQYLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L D F+                  D  L    ++   +  
Sbjct: 405 KFGGHDFACGLSMEEEKIAPLRDQFENNFQVEGGLETK----DYDMELPMKGLSPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+P P+F+  +  +     +     H++ T   Q    L  + F      L
Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKMGKDKNHVKFTVNKQGGN-LAVVGFN--KGFL 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
              L+    K       L +N +R     Q
Sbjct: 518 NNNLLPFISKIF---VQLSLNTYRKQISLQ 544


>gi|224476733|ref|YP_002634339.1| putative single-strand DNA-specific exonuclease [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421340|emb|CAL28154.1| putative single-strand DNA-specific exonuclease [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 758

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/579 (27%), Positives = 280/579 (48%), Gaps = 30/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           F+W        I+    I  +  +  IV ++L ++N++     +  L  S   +  DP  
Sbjct: 6   FKWDLQQNTNQISD--EIASEMKLTPIVRKILESKNITDKQDIEALLKKS--TIKHDPYT 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           ++D  KA  RI +AI N E+I+I+GDYD DG  S  +++  L         YIP+R  +G
Sbjct: 62  MSDMKKAIERINKAIDNHERILIYGDYDADGVTSTTILVSVLQELGAEVGWYIPNRFTEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN +  +   +EG  LIITVD G   +  ++ A   G+DVI+ DHH++      A+A+
Sbjct: 122 YGPNEAAFKNAYDEGINLIITVDNGIQGHHEIKTAQELGMDVILTDHHEIGETLPEAFAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   +      +L  AGV   +   +                     L A+ T+ D+V
Sbjct: 182 VHPMHPEFNYPFKYLSGAGVALKIAQALLDH-----------PSPYYTALAAIGTIADLV 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L   NRA V  GL +  +   P ++AL+   +    IT E +G++IGP +NA GR+ ++
Sbjct: 231 SLTDENRAIVQDGLDILNQTQFPSIQALLNNASYKDTITEETIGFVIGPRLNAVGRLDDA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +L + LL+SD+ +E E LA +++  NQ R+ +   + ++A      Q ++  Q   +V+ 
Sbjct: 291 SLAAELLMSDNDEEAEFLAEQVEHFNQERKDIVKEISDEAVLMAAEQVENGNQ--FLVLA 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + WH G++G+ A+++ E FG P+  ++ +       GS RSIE   +  +     E  +
Sbjct: 349 QENWHEGVLGIAASKVVETFGLPTIILNIDTVQNFAKGSARSIEQVSMYDI--LDKERTL 406

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH MAAG+T+   N  +L +        I      +P  K+D +L+ + + +  I
Sbjct: 407 ITKFGGHHMAAGMTLPIENIEKLREALNVHMAEISKEKDLSPRKKVDLLLDEAEITVKNI 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             ++   P+G    +P+F   N K+   + +     HL+MT        +Q++ ++    
Sbjct: 467 RDIQKLRPFGTDFTSPLFQLNNAKIIQAKGIGQEGKHLKMTIGD---SKIQSLYWQHGEY 523

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      + +++ G L +N W G++  Q  V D +
Sbjct: 524 ----ANQIEPNQPINMIGTLQINEWNGNQSPQFMVQDMA 558


>gi|225024577|ref|ZP_03713769.1| hypothetical protein EIKCOROL_01454 [Eikenella corrodens ATCC
           23834]
 gi|224942728|gb|EEG23937.1| hypothetical protein EIKCOROL_01454 [Eikenella corrodens ATCC
           23834]
          Length = 565

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/580 (29%), Positives = 257/580 (44%), Gaps = 28/580 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
           V    Q       A+      P ++AR+   RNV        L+  +  L+P    L + 
Sbjct: 4   VIRTRQADPEAEQALL-AAGTPPLLARLFAARNVRSP---AELHNHLASLLPY-QSLKNI 58

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           D AA R+ +AI   E+I+I  DYD DGA + A+ +  L H        +PDR   GYG  
Sbjct: 59  DAAAERLARAIQEQERILIVADYDADGATACAVGIWGLRHMGAQVEFLVPDRFKHGYGLT 118

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P L +     G QL++TVD G +S   +  A   G+DVI+ DHH      +P   +VNPN
Sbjct: 119 PQLADLAAERGTQLLLTVDNGISSTAGVARAQALGMDVIITDHHLPGDT-LPECIIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVV 254
           +        +L   GV+F VL  +  +LR             +L  LLDLVAL TV DVV
Sbjct: 178 QPGCAFASKNLAGVGVIFYVLTALRALLRTQQWFNPQRLPEPNLAELLDLVALGTVADVV 237

Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312
            L   NR  V +GL   +     PG++AL +            +LG+ IGP INA GR+ 
Sbjct: 238 TLDYNNRILVSQGLKRMQIGKTRPGIQALFQVAQRDMRQAKPFDLGFAIGPRINAAGRLE 297

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
              +G   L+++D      LA +L+ LN+ R+ +E  ML++A A              I 
Sbjct: 298 NMEIGIACLLAEDPDTAAELAEQLNELNRARQEIEQTMLQEALALADQIIVG--NGLSIT 355

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
                WH G+VG++A RLK++F RP+   +   + +  GSGRSI    +   +    +  
Sbjct: 356 AFHPDWHQGVVGIVAGRLKDRFHRPTIVFAPTGNSELRGSGRSIPSLHLRDAIDLVAKRH 415

Query: 433 I--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              ++K GGHAMAAGL++   +F R    F+     ++     T  F  DG L+   +++
Sbjct: 416 PELILKFGGHAMAAGLSIREQDFPRFQQAFESVLTELLDQDALTRTFLTDGSLSPEEISL 475

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
              + L +   +G G   P F     ++   RVV   H +         T++A+ FR   
Sbjct: 476 HTAETLSN-QVWGQGFQPPCFYNQ-FEVLWQRVVGNGHKKAGLNC-GGHTVEAMFFRCAE 532

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                        ++H       N WR     QL +    
Sbjct: 533 E---------LPAKIHTVYRPIANQWRNQYELQLHIDHWE 563


>gi|213420627|ref|ZP_03353693.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 514

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/518 (32%), Positives = 257/518 (49%), Gaps = 16/518 (3%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGY 135
             D A   +  A     +I++ GD+D DGA S AL +  +     +  +  +P+R  DGY
Sbjct: 2   GIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGY 61

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +P ++++    GAQLI+TVD G +S+  + +A    I VIV DHH        A A++
Sbjct: 62  GLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAII 121

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVC 251
           NPN  D       L   GV F +++ +   LR             +L  LLDLVAL TV 
Sbjct: 122 NPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVA 181

Query: 252 DVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGG 309
           DVVPL   NR    +GL   R  +  PG+KAL+E  N     + A +LG+ +GP +NA G
Sbjct: 182 DVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAG 241

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ + ++G  LL+ D+  E  +LA +LD LNQ R+ +E  M  +A           +   
Sbjct: 242 RLDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLP 301

Query: 370 VI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
               +    WH G+VG+LA+R+KE+F RP  A +   DG   GSGRSI+G  +   +   
Sbjct: 302 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 361

Query: 429 V--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                 +++K GGHAMAAGL++E   F +    F +     +   +       DG L+A+
Sbjct: 362 DTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAA 421

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIA 545
            +++ +  +L  AGP+G   P P+F     +L   R+V   HL++  E       L  IA
Sbjct: 422 EMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
           F +  T   +    +  + + +   L +N +RG++  Q
Sbjct: 481 FNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQ 514


>gi|295426171|ref|ZP_06818836.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064148|gb|EFG55091.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           amylolyticus DSM 11664]
          Length = 756

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 274/578 (47%), Gaps = 32/578 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W     +   +    + +K+ +  I A++   R ++ D   +F   +    + DP ++ 
Sbjct: 2   KWNKRQAEALDSD---LIEKYQLSPIAAKLFSLRKINTDDKLNFWFNATENDLADPSLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI N EKI I+GDYD DG  +  +M   L     + + +IPDR  DGYG
Sbjct: 59  DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTDALGILGADVHYFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN       + +G +LIITVD G T  D +QYA    +DVI+ DHH  +      YALV+
Sbjct: 119 PNMERYHDIVADGTKLIITVDNGVTGVDEVQYAQQHDVDVILTDHHTFQENVPKPYALVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   +               +  LLDLV + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRKLME-----------DPMPELLDLVMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHVIVKRGLEMLNQTERPGLRALIKNAGLTMGSINETDVGFNIAPRLNAVGRLANAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           +   LL+SDD  E + LA K++ LN  R+ + + +  +  +++       Q+ + +V+  
Sbjct: 288 MAVELLLSDDEAEAKKLADKVEELNDERKELTAEVYHRCMSQIKENSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRSI GF++   ++   ++ +L 
Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNKAGEIKGSGRSIPGFNLFDALNPL-KDSLLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++       L D F+K  H              D  L    +    +  
Sbjct: 405 KFGGHDFACGLSLTENKINLLRDKFEKDFHVEGTLEEK----YYDFELPLKNLTPQTMAE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+PNP+F+  + ++     +     H++ T E    + L  + F       
Sbjct: 461 INQVGPFGTGDPNPIFSIDSPQITHFFKMGKEKNHVKFTAEKGGGK-LDIVGFN------ 513

Query: 554 GEFLMQSRGKRMH-VTGHLCVNYWRGSKRCQLRVLDAS 590
            EFL  +    +  V   L VN +R   + Q  +    
Sbjct: 514 KEFLNNNLLPFISEVFFQLAVNTYRNRVQLQGIMEGIQ 551


>gi|256843328|ref|ZP_05548816.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus
           125-2-CHN]
 gi|256614748|gb|EEU19949.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus
           125-2-CHN]
          Length = 757

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/571 (27%), Positives = 268/571 (46%), Gaps = 32/571 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      E    A  + +K+ +  I A++   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQERTADE---LAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI + EKI I+GDYD DG  +  +M   LS    + + +IP+R  DGYG
Sbjct: 59  DMDKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  + ++YA    +DVI+ DHH  + ++  AYA V+
Sbjct: 119 PNMDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLEMLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A K++ LN  RR + + + ++    +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADKIEELNNKRRELTTEVYDKCMTLIHKNSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRS  GF++   ++  +++  L 
Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNP-IKDQYLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L + F+   H              D  L    +    +  
Sbjct: 405 KFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKK----YDMELPMQGLTPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+  P+F+  N  +     +     H++ T   +    L  I F       
Sbjct: 461 INQVGPFGTGDTQPIFSISNPTITHFFKMGKDKNHVKFTVAKKGGN-LSVIGFNKG---- 515

Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQ 583
             FL  +    +      L +N +R     Q
Sbjct: 516 --FLNNNLLPFISQIFVQLSLNTYRNQVSLQ 544


>gi|304317001|ref|YP_003852146.1| single-stranded-DNA-specific exonuclease RecJ
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778503|gb|ADL69062.1| single-stranded-DNA-specific exonuclease RecJ
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 819

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/581 (31%), Positives = 292/581 (50%), Gaps = 25/581 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + WVS       N    I  K+ + + +A+ +VNR         ++LNP +  +M  P +
Sbjct: 3   YNWVSKKIL-NENLVEKIKIKYKLKEYIAQTIVNRGYDDLKKVDEYLNPDL-NMMHSPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   +KA+  I   I  + KI I+GDYDVDG    +++ + L     + N YIPDR+ +G
Sbjct: 61  LDGIEKASSVIKYHIEKNNKITIYGDYDVDGITGTSILYKTLKKLGADVNFYIPDRLQEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + +EK  N G+ LIITVDCG TS   +++A   GI++IV DHHQV      A  +
Sbjct: 121 YGINLNAIEKIYNLGSSLIITVDCGITSVIEVEHAKKLGIEIIVTDHHQVPDVLPDATCV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP+  +       L   GV F + + +              D L  LD+VAL TV D+V
Sbjct: 181 INPHIKNCTYPYRELSGVGVAFKLCLALI-----------GDDALDYLDIVALGTVADIV 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V +GL + +   N GLKALI      +  I   ++G+++ P +NA GR+  
Sbjct: 230 PLTGENRIIVKEGLKMMKNSKNKGLKALINVSGLNNKDINTYHVGFVLAPRLNAAGRLES 289

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LL +DD  E   +A  L+  N  R+ +E  ML++A  +V T+  D+ +   IV+
Sbjct: 290 AVSCVNLLTTDDDIEANRIAEYLNSENIKRQELEKKMLDEAIVQVETKI-DLDKEKFIVL 348

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WHPGI+G++++R+ EK+ RPS  IS   D  G GSGRSI+GF+I   + +A     
Sbjct: 349 YSEDWHPGIIGIVSSRITEKYNRPSILISICGD-TGKGSGRSIKGFNIYDAIKYA--GDC 405

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH MAAG+T+++       D   ++A + +  +   P  +I+  +    +++   
Sbjct: 406 LIGFGGHEMAAGITIKKDEIESFKDKLNEYAESKLNDIDLIPTIEIETSIENETIDLEGA 465

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
           + L    P+G  NP P +   +  ++    V    HL+     ++      I F +    
Sbjct: 466 NQLSLLEPFGNSNPMPAYIINHLHVKQTYTVGNNKHLR-IIAQKNDMCYDIILFHMG--- 521

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             E      G  + + G++ VN W G K+ ++   D    E
Sbjct: 522 -SEANKFKEGYIIDIAGYINVNEWNGDKKVEIIAKDIKIKE 561


>gi|293381948|ref|ZP_06627911.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           crispatus 214-1]
 gi|312978231|ref|ZP_07789975.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           crispatus CTV-05]
 gi|290921487|gb|EFD98526.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           crispatus 214-1]
 gi|310894949|gb|EFQ44019.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           crispatus CTV-05]
          Length = 757

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/571 (27%), Positives = 268/571 (46%), Gaps = 32/571 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      E    A  + +K+ +  I A++   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQERTADE---LAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI + EKI I+GDYD DG  +  +M   LS    + + +IP+R  DGYG
Sbjct: 59  DMDKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  + ++YA    +DVI+ DHH  + ++  AYA V+
Sbjct: 119 PNMDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLEMLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A K++ LN  R+ + + + ++    +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADKIEELNNKRKELTTEVYDKCMTLIHKNSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRS  GF++   ++  +++  L 
Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNP-IKDQYLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L + F+   H              D  L    +    +  
Sbjct: 405 KFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKK----YDMELPMQGLTPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G G+  P+F+  N  +     +     H++ T   +    L  I F       
Sbjct: 461 INQVGPFGTGDTQPIFSISNPTITHFFKMGKDKNHVKFTVAKKGGN-LSVIGFNKG---- 515

Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQ 583
             FL  +    +      L +N +R     Q
Sbjct: 516 --FLNNNLLPFISQIFVQLSLNTYRNQVSLQ 544


>gi|222111928|ref|YP_002554192.1| single-stranded-DNA-specific exonuclease recj [Acidovorax ebreus
           TPSY]
 gi|221731372|gb|ACM34192.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax ebreus
           TPSY]
          Length = 574

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/578 (31%), Positives = 274/578 (47%), Gaps = 30/578 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
             R +   ++  +  ++AR+   R +    AK+ L+ ++  L+P P  L    +AA  + 
Sbjct: 9   PPRVVWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLMGVRQAAALLA 64

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145
            AI    +++I  DYD DGA + A+ +R L      +    +PDR+VDGYG   S+ ++ 
Sbjct: 65  DAISQDRRLLIVADYDCDGATACAVGVRGLRLLGARHVQYLVPDRVVDGYGLTASIAQRV 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
              GA ++ITVD G  S + +  A   G+ V++ DHH   SE   A A+VNPN+      
Sbjct: 125 HERGADVLITVDNGIASIEGVARAKALGLTVLITDHHLPGSELPAADAIVNPNQPGCGFE 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
              +   GV+F VL+ +   LR            L  LL LVAL TV DVV L   NR  
Sbjct: 185 SKSIAGVGVMFYVLMALRAELRARGVFDKATQPKLEPLLPLVALGTVADVVRLDNNNRRL 244

Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R  Q  PG++AL +     +P+ T  + G+ +GP INA GR+ +  LG   L
Sbjct: 245 VAQGLKRIRAGQMQPGIQALFDAAGRKAPVATTFDFGFALGPRINAAGRLADMTLGIECL 304

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380
           ++DD      LA +LD +N+ RR +E  M EQA     +  D+  +    I V    +H 
Sbjct: 305 LTDDPARAADLARQLDAINRERRELEGGMREQALLLAESLFDEGEEPPPAISVFDPDFHE 364

Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434
           G+VG++A+RLK+K  RP+F      +  ++ +  GSGRSI GF +   +        G++
Sbjct: 365 GVVGIVASRLKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVAKRHPGVI 424

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGHAMAAG TV   +F      F + A   + A   T   + DG L        L+D
Sbjct: 425 LKFGGHAMAAGCTVAEEHFDLFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAELVD 484

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552
            L     +G G   P F     ++ S R+V     HL +    Q  + + AI F      
Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSIKLLHQ-GQPVDAIWFGHTD-- 539

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     +R  +   L VN WRG +R Q  V    
Sbjct: 540 -------PLPERALLAFRLDVNEWRGERRVQFLVEGLE 570


>gi|51893577|ref|YP_076268.1| single-strand DNA-specific exonuclease [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857266|dbj|BAD41424.1| single-strand DNA-specific exonuclease [Symbiobacterium
           thermophilum IAM 14863]
          Length = 853

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/586 (29%), Positives = 279/586 (47%), Gaps = 31/586 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
            RW           A  ++++ +I  + A+VL+NR ++  + A+ FL P  R  + DP +
Sbjct: 8   KRW--RPEPADPAGARLLSRQLSISPVTAQVLINRGLTTPEAAQAFLTPG-RDRIHDPFL 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A   I   + +   IM++GDYD DG  + A ++  L         YIPDR  +G
Sbjct: 65  LKDMREAVDLIRARLRSGGPIMVYGDYDADGVTATATLLLALRALGAEVAYYIPDRFREG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +      G   I+TVD G  +    Q A   GI ++V DHH+         AL
Sbjct: 125 YGLNAGALRSIRARGYDFIVTVDTGVAAVAEAQVARELGITLVVTDHHEPGPVLPDVPAL 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R D       L   GV F + + +              +   LLD+V L TV D++
Sbjct: 185 VNPRRPDCTYPFKGLAGVGVAFKLALALGA-----------PNAWDLLDIVTLGTVADMM 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL+  NRA V +GL        PGL+AL++   +  P+TA ++G+ +GP INA GR+  +
Sbjct: 234 PLVDENRAIVREGLSRLGATHRPGLRALMQVAGVQPPVTAGHVGFALGPRINALGRMSSA 293

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
             G  LL+++D    E LA +LD  N+ R+ +E+A+LE+A A+      + ++   +V+ 
Sbjct: 294 EAGVELLLTEDPARAEELARRLDEENRARQEIEAAILEEALAQAAALPPE-EREYALVLA 352

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ WH G+VG+ A+R+ E + RP+  +S  E  +  GS RSI GF + +         + 
Sbjct: 353 GEGWHHGVVGICASRVLEVYHRPTILLS-IEGDEVRGSARSIPGFHMQRA--LLQMSELF 409

Query: 435 VKGGGHAMAAGLTVERVN-FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
            + GGHA AAGL++   +    L     + A   +      P  ++D  +    ++  LI
Sbjct: 410 TRFGGHAAAAGLSLRGRDLVPELRRRMNRLAAEWLRPEDLVPEQRVDAFVALDQIDEGLI 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSE---TLQAIAFRV 548
             LE+  P+G GNP PV A    ++   R +     HL++            ++A+ + +
Sbjct: 470 RELEALEPFGLGNPAPVLATDGLQVVDGRAIGRNGQHLKLFLRPDGDGAAAPVEAVGWNM 529

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                    M   G+R+ V     +N + G  R QL + D  P  G
Sbjct: 530 A------VAMPEPGRRIAVAYEPEINTYMGRSRIQLVLKDMKPAAG 569


>gi|225568640|ref|ZP_03777665.1| hypothetical protein CLOHYLEM_04718 [Clostridium hylemonae DSM
           15053]
 gi|225162568|gb|EEG75187.1| hypothetical protein CLOHYLEM_04718 [Clostridium hylemonae DSM
           15053]
          Length = 586

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/600 (29%), Positives = 287/600 (47%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +W+ L           + +K  I   +A ++ NR+ +  +    +LN +I  L  D +++
Sbjct: 3   QWILLRKGADF---EELGRKFGISPRLACLIRNRDVIGPEAVDRYLNGTITDLY-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I  + KI I GDYD+DG  +  ++++ L      A+  IPDRI DGY
Sbjct: 59  KDMDKAVEILREKIEENRKIRIIGDYDIDGVNATYILLKGLRKSGACADSDIPDRIKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N  L+E+   +G   I+T D G  + + + Y    G+ VIV DHH+V  E        
Sbjct: 119 GLNIELIERAYRDGIDTIVTCDNGIAASEEIAYGKRLGMTVIVTDHHEVPYESEGEEKNY 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+++P +         LC A V + ++  +Y  +  +       DL  LL+ VA
Sbjct: 179 ILPAADAVIDPKQPGCGYPFKGLCGAAVAYKLIEALYEAMGNE-----ADDLDDLLENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
           +ATV DV+ L+  NR  V +GL   RR  NPGL ALIE   I    + + ++G+++GP +
Sbjct: 234 VATVGDVMELVDENRILVREGLERLRRTVNPGLGALIECTGIDREKLNSYHIGFVLGPCL 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NAGGR+  +     LL ++  +E ++LA  L  LN +R+ M +A +EQA   +  +   +
Sbjct: 294 NAGGRLDTAKRALDLLCAERKKEADILAGDLKALNDSRKEMTAAAVEQAVQMI--ETTSL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V+ V     H  + G++A RL+E++ RP++ ++  EDG   GSGRSIE + +    
Sbjct: 352 GKDRVLAVYLPDCHESLAGIVAGRLRERYCRPAYVMTDAEDGV-KGSGRSIEAYHMY--E 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             A    +L K GGH MAAG ++E+ N  +      +     +          ID  +  
Sbjct: 409 ELAGCRELLTKYGGHMMAAGFSLEKENVEQFRRRLNENC--TLKESDMREKVVIDMEMPF 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           S V   ++  L+   P+G GN  PVFA    +L   ++       L+M  +       +A
Sbjct: 467 SCVTEDIVRELKYLEPFGNGNKKPVFAARKVELLGGQIFGKNRNVLKMRVKDAAGNETEA 526

Query: 544 IAFRVYGT--------PLGEFLMQSRGKR-----MHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + F   G            E L Q  G+R     + VT +  VN + GS+  Q+ +    
Sbjct: 527 VYFGDTGRFCSYLEEQYGKEALKQFLGRRRSKMTLSVTYYPEVNEYMGSRTMQIVITHYQ 586


>gi|163846709|ref|YP_001634753.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524518|ref|YP_002568989.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus sp.
           Y-400-fl]
 gi|163667998|gb|ABY34364.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448397|gb|ACM52663.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus sp.
           Y-400-fl]
          Length = 570

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/582 (29%), Positives = 264/582 (45%), Gaps = 22/582 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMP 70
           S    RW             +  ++  +  ++A +L  R +     A+ FLN      + 
Sbjct: 2   SARRQRWEIRPPAP-----TSFVEQLGLHPLLAHLLYQRGLHEPSIARAFLNADYSSGLH 56

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP  +     AA RI +AI   E I ++GD+DVDG  +VAL+ + +         YIP R
Sbjct: 57  DPFAMRGMAAAAGRIAEAIERGELIAVYGDFDVDGITAVALLTQAIKAMGGRIRPYIPHR 116

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             +GYG N   + + + +G  L+ITVDCG ++Y  +  A   G+DVIV DHH       P
Sbjct: 117 AREGYGLNNLAISQLVADGVTLLITVDCGISNYAEVAEANRLGLDVIVTDHHHPPMLLPP 176

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A+VNP + D       L   G+ F V+  + R      K P       LLDLVAL TV
Sbjct: 177 ALAIVNPRQPDCAYPFKGLVGVGIAFKVVQALARY----GKRPAGLRGRDLLDLVALGTV 232

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309
            D+ PL   NR  V  GL+       PG+ AL+    +S   I +  + + + P +NA G
Sbjct: 233 ADMGPLHDENRVLVRAGLIALNESSRPGVLALVAAAGLSPGMIDSGAIAFALAPRLNAAG 292

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++     LL++D+  + ++LA +L+  N+ R+ +   +   AE  V+       +  
Sbjct: 293 RLADARRAYELLLADERMKADLLAAELNTTNRERQALTRQLYAMAETMVMQ--SGRTEHP 350

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +IVV    ++ G++GL+AARL E + RP   I   E+    GS RSI GF I  +     
Sbjct: 351 LIVVSHPGFNAGVIGLVAARLVETYHRPVIVIEQGEE-TSRGSARSIPGFSIIDLFDQC- 408

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              + V+ GGHA AAG T+       L           + A    P   ID  +  S ++
Sbjct: 409 -ADLFVRYGGHAAAAGFTISTNQITALEQRLLALGSQHLSAEQLVPRLLIDATVPLSDLS 467

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAIAFRV 548
             L   L    P+G GNP PVF  PN  +   +   +  HL+M        + +AI F  
Sbjct: 468 WDLYATLCQLEPFGQGNPQPVFMTPNVTVIDPQPTTDGNHLRMRVRVGQ-TSFEAIGFHF 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 + L +     + +   L V+ W G +R +L V D  
Sbjct: 527 G--RFADALRRHPN--IDLAYQLAVDEWNGQRRLRLLVRDFR 564


>gi|238852633|ref|ZP_04643043.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri 202-4]
 gi|238834779|gb|EEQ27006.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri 202-4]
          Length = 756

 Score =  369 bits (946), Expect = e-99,   Method: Composition-based stats.
 Identities = 160/577 (27%), Positives = 284/577 (49%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      +  N    + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQR---QASNLDQELIEDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K+  RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+ S  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  +++ V+
Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPASFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DAMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI++  ++   ITA ++G+ I P +NA GR+ +++
Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGQITATDVGFNIAPRLNAVGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A K++ LN  R+ + + + E+  A+V  +    Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEEIATKIEELNNERKELTAEVYEKCLAQVKEKGW--QHRNTLVLYS 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E+G+  GSGRS  GF++   +   +++  L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSNGFNLFDTLEP-MKDDFLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++        +  +              V   D  LN   V    +  
Sbjct: 405 KFGGHDFACGLSLKADKL----EGLRSRFEKSFKPNTDLEVKDFDFELNLREVTPDTLTE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP PVF+     ++S+  +     H++ T E  + + L  + F   G   
Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFTAEKNNGK-LTIVGFN-KGFVN 518

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              L   +   +     L +N W+     Q  +    
Sbjct: 519 QNLLPFIKELYV----TLSLNSWKNVSTVQGMLAGIE 551


>gi|294651891|ref|ZP_06729181.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822214|gb|EFF81127.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 566

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 173/560 (30%), Positives = 262/560 (46%), Gaps = 21/560 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +     ++L    P  L   D A   I QAI   ++I+I
Sbjct: 20  GVPSFIAEILARRGVQSEQELE-----LKLKHLLPPTLKGIDVAVELIDQAIDQQKQIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITV 156
            GDYD DGA S ALM+  L          +PDR   GYG  P + E         L+ITV
Sbjct: 75  IGDYDADGATSTALMVLVLQEMGARVEYLVPDRFKYGYGLTPKIAELAKQSYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A    + VI+ DHH        A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVETAQALAMQVIITDHHLTTKPTPTAEAVVNPNQLGCDFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +     Q      +  +   LDLVAL T  DV  L   NR  +  GL    + Q 
Sbjct: 195 YVLAKLASHRAQYG--KSSCKVTQYLDLVALGTYADVATLDYNNRILIDAGLKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + + A++LG+++GP INA GR+    +G   L+++D Q    +A 
Sbjct: 253 RVGILALLDIAGRDAASLRAQDLGFVLGPRINAAGRMESMRIGIECLLANDMQTAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E+ M +QA + +   Q    Q    +V+  ++WH G++G++A RLKE+
Sbjct: 313 QLNQLNLERRQVETEMKQQALSALQHIQLTAEQIPPALVMFDEQWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + +EDG    GS RSI+G  I  M+         +L   GGHA AAGLT+ +
Sbjct: 373 FYRPSLVFAPDEDGIHIKGSARSIDGIHIRDMIESVAEQRPDLLSHFGGHAAAAGLTLRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F      F +    +  + +       DG L  SA++++ +D +E  GP+G   P P 
Sbjct: 433 EHFDEFKSLFTQMIAEM-DSDLFQATLWTDGELGDSALHLSSLDWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     ++   R +   HL++      S ++ AIAF         F        + +   
Sbjct: 492 FEGR-FQVVDYRWLKDQHLKLKLAV-GSHSIDAIAFNAIDR----FEFNPMLGYVDLVYS 545

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           L  N + GS   QL+V    
Sbjct: 546 LERNVFNGSTSLQLQVTYLK 565


>gi|116629483|ref|YP_814655.1| single-stranded DNA-specific exonuclease [Lactobacillus gasseri
           ATCC 33323]
 gi|311110872|ref|ZP_07712269.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri MV-22]
 gi|116095065|gb|ABJ60217.1| exonuclease RecJ [Lactobacillus gasseri ATCC 33323]
 gi|311066026|gb|EFQ46366.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri MV-22]
          Length = 756

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 159/577 (27%), Positives = 283/577 (49%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      +  N    + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQR---QASNLDQELIEDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K+  RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+ S  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  +++ V+
Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPASFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DAMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI++  ++   ITA ++G+ I P +NA  R+ +++
Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGQITATDVGFNIAPRLNAVVRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A K++ LN  R+ + + + E+  A+V  +    Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEEIATKIEELNNERKELTAEVYEKCLAQVKEKVW--QHRNTLVLYS 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E+G+  GSGRS  GF++   +   +++  L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSNGFNLFDTLEP-MKDDFLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++        +  +              V   D  LN   V    +  
Sbjct: 405 KFGGHDFACGLSLKADKL----EELRSRFEKSFKPNTDLEVKDFDFELNLREVTPDTLTE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP PVF+     ++S+  +     H++ T E  + + L  + F   G   
Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFTAEKNNGK-LTIVGFN-KGFLN 518

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              L   +   +     L +N W+     Q  +    
Sbjct: 519 QNLLPFIKELYV----TLSLNSWKNVSTVQGMLAGIE 551


>gi|89895199|ref|YP_518686.1| hypothetical protein DSY2453 [Desulfitobacterium hafniense Y51]
 gi|89334647|dbj|BAE84242.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 770

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 173/553 (31%), Positives = 269/553 (48%), Gaps = 23/553 (4%)

Query: 44  ARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           A +L  R +   +   +FL PS+  L   P    +  +A  R+  A    EKI+I+GDYD
Sbjct: 2   ADILRQRGIEAEEEIMEFLRPSLLNL-NSPFAFREMARAIERLELARAQEEKILIYGDYD 60

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S AL+ + L+     A  YIP R+ +GYG +   + K +    +++ITVDCG T+
Sbjct: 61  VDGVTSTALLYKVLTDLGFKAVAYIPSRMDEGYGLHKDAITKALQANVKVMITVDCGITA 120

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            + ++YA +QGID+I+ DHH+       AYA++NP   D       L   GV F +   +
Sbjct: 121 VEEVEYARSQGIDIILTDHHEPPDSLPQAYAILNPKVKDSGYPFRDLAGVGVAFKLAQAL 180

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
              L +       + +L +LDL AL T+ D+VPL   NR  V  GL       + GL+ L
Sbjct: 181 LERLEEGKSGA--YAVLEILDLAALGTIADLVPLTHENRIIVAYGLRQMENTIHLGLRTL 238

Query: 283 IERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
           +E       P+ A  + +M+ P INA GR+  +  G  LL++   +    LA  L   N 
Sbjct: 239 LEECGLWGKPLKAGQIAFMVAPRINAAGRMDSARAGLELLLTGHEERAVELARFLSRENT 298

Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401
            R+  E  +  +A   +           VIV+ G  WH G++G++A+RL E++ RP F I
Sbjct: 299 LRQDTEKEIFAEAVEILEKNPM----PRVIVLSGKNWHHGVIGIVASRLVERYYRPVFLI 354

Query: 402 SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
           + EE+  G GS R I G+ +  +     +  +L K GGH+ AAG +++      L +   
Sbjct: 355 AEEEE-IGKGSARGIGGYHV--LDELKAQAELLEKFGGHSQAAGFSLKLETIPLLREALN 411

Query: 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI 521
           + A   +P  +     ++D  +    ++ +L+  LE   P+G GNP+PV A  ++ L   
Sbjct: 412 Q-AALHLPEEMFYERIRVDQCVPLEVLDASLLHDLEHLAPFGFGNPSPVLAGRDYPLYMA 470

Query: 522 RVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG-KRMHVTGHLCVNYWRG 578
             V     HL+  F  Q     + IAFR      GE L    G   + V   L  N +RG
Sbjct: 471 DTVGKDHAHLKCMFGPQG--EWEGIAFR-----KGEELANILGSATVDVAFGLDWNTFRG 523

Query: 579 SKRCQLRVLDASP 591
           ++  QL + D  P
Sbjct: 524 AQSIQLMIKDIQP 536


>gi|116618568|ref|YP_818939.1| single-stranded DNA-specific exonuclease [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097415|gb|ABJ62566.1| exonuclease RecJ [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 655

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 170/587 (28%), Positives = 284/587 (48%), Gaps = 27/587 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72
           +   W  L  Q        ++ +  I   ++ ++  R  +   A   +L PS+  L  DP
Sbjct: 2   NQNNWNILP-QPSEKVVRQLSAQLNISQFMSTIVAQRGYTDPEAAFKYLQPSVEQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L D D+   R+  A +  EKI+++GDYD+DG  S A+M+  L     +   YIP+R  
Sbjct: 60  MLLHDMDRTIERLQDAAFGGEKIVVYGDYDMDGVTSTAIMVEALEVLGADVTPYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    +K I +GAQLI+TVD G +  +A++YA +QGIDVI+ DHH++ +    AY
Sbjct: 120 DGYGPNIDTYKKLIADGAQLIVTVDNGVSGQEAVEYAMSQGIDVIITDHHEMPATLPNAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL-LSLLDLVALATVC 251
           A+++P         G L  AGV F V   +   L +   V    +L   LLDLVAL  + 
Sbjct: 180 AVIHPRHPKGQYPFGDLSGAGVAFKVAQAL---LNEGQPVEDQTELPTELLDLVALGEIS 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGG 309
           D+V L   NR  V  GL        PGL A+++         + +E + + I P +NA G
Sbjct: 237 DMVSLTDENRVLVSWGLKQINVSPRPGLTAVLKNAGKKDNEPVISETVSFKIAPRLNAVG 296

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G+++L  +LL+S D +E   +A +++ +N  R+ +   +   A+       D+ +   
Sbjct: 297 RLGDASLSLQLLLSQDPEESTAIASEVEAINAQRQEIVEEVFGSAKQMA--LSDEYKNDQ 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+V+ G  WH GI+G++A+RL E   +P+  +S  + G   GSGR+   FD+ + ++   
Sbjct: 355 VLVIAGQDWHQGILGIVASRLVELLQKPTIVLSLTD-GVYKGSGRTFGDFDLYQFMN--T 411

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +    GGHA A GL +       L +  +  +  +    I      I+  L+ + ++
Sbjct: 412 FHDLYDTFGGHASALGLAISPEQLDVLKEQVRLNSAKL---QIHAKPISINTTLSVNEIS 468

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
               + L    P+G GN  PVF     K+  +  +     H+++  E+     ++A+ F 
Sbjct: 469 TETYEELRLLEPFGTGNQQPVFGLQQPKINKVTTMGNLKQHIKLALENN----VEAVGFN 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                    +    G  +     L +NY+RG K  QL +   +  E 
Sbjct: 525 HPD--WVPMVANPLG--ISFAATLGINYFRGRKTIQLLLTAINTSEA 567


>gi|309805328|ref|ZP_07699378.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165328|gb|EFO67561.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LactinV 09V1-c]
          Length = 761

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 159/572 (27%), Positives = 276/572 (48%), Gaps = 28/572 (4%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             ++  +    +  K+ +  I A++   R ++ D   DF        + DP ++ D  K 
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNDDESKLADPFLMHDMKKT 63

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+   
Sbjct: 64  VNRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            ++ +N G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  +
Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                   C AGV + +   +           +  ++  LLDL  + T+ D+V + G   
Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   L
Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H 
Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GGH
Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             A GL++++ +  +L + F+     +  + +       D  LN + + +     +   G
Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L 
Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519

Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
            +    +H+      +N W    + Q  + D 
Sbjct: 520 TNILPYVHMIMVTFGINKWNNKAKLQGIISDF 551


>gi|152981063|ref|YP_001352953.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium
           sp. Marseille]
 gi|151281140|gb|ABR89550.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium
           sp. Marseille]
          Length = 549

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 172/563 (30%), Positives = 265/563 (47%), Gaps = 25/563 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++AR+   R +        LN  +  L+P P +L   D AA  +  AI   +K++I
Sbjct: 5   GVHPVMARLYAARGLLD---LKELNSELTALIPPPGLLK-IDVAATFLADAIAAKKKLVI 60

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
             DYD DGA + A+ +R L       +  +P+R   GYG  P ++E     +   +I+TV
Sbjct: 61  VADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEIVELAVREKSPDIIVTV 120

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  S D +  A  +GIDV+V DHH        A  +VNPN+ D      +L   GV+F
Sbjct: 121 DNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQPDCGFPSKNLAGVGVMF 180

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            VL+ +   +R+           L +LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 181 YVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDANNRILVAQGLKRMRAG 240

Query: 275 GNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
                 A         +   +  +LG+ +GP +NA GR+ + +LG   L +DD      +
Sbjct: 241 RMHAGVAALFRAAGREARRASPFDLGFALGPRLNAAGRLSDMSLGIECLTTDDEGRAWAI 300

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +LD +N+ RR +E+ M + A   +  +  + Q  + I V    WH G++G++A+RLK+
Sbjct: 301 AQQLDEINRERRTIEADMQDTALLLL--ENFNPQDKTTISVFDPSWHQGVIGIVASRLKD 358

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           KF RP+   +   DG   GSGRSI GF +   +         ++ K GGHAMAAGLT+  
Sbjct: 359 KFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPKLIDKFGGHAMAAGLTIRA 418

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
                  + F+    + +       V + DG L ++      I+++E A  +G G   P+
Sbjct: 419 DALDAFTEAFEAVGKDWLDQNQLERVVETDGPLESAYFTTQFIELME-AQVWGQGFAPPL 477

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     ++ + R++   HL++T E +D  +  AI F             S   R  V   
Sbjct: 478 FCDE-FRVVNQRILKERHLKLTLE-KDGASYDAIWFGHID---------SLPNRARVAYR 526

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
           L  N + G  R QL V  A   +
Sbjct: 527 LDANEFNGRTRVQLLVEHAEAAD 549


>gi|149173288|ref|ZP_01851919.1| single-strand DNA-specific exonuclease [Planctomyces maris DSM
           8797]
 gi|148848094|gb|EDL62426.1| single-strand DNA-specific exonuclease [Planctomyces maris DSM
           8797]
          Length = 587

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 167/584 (28%), Positives = 285/584 (48%), Gaps = 20/584 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W      E  ++   ++ +  I  ++A+VL+ R +     A+ F++  +  L+  P  
Sbjct: 3   QNWRFAPHDE--SQVRRLSSEMRISPLLAQVLIARGLQDAAAARSFIDARMTELLE-PGS 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   + A+ RIV A+ +  +I I+GDYDVDG  + +++++ ++  +   + +IP+R+ DG
Sbjct: 60  MPGVETASDRIVAALKDKRRITIYGDYDVDGMTATSILLQCITLANGKCDYFIPNRLDDG 119

Query: 135 YGPNPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YG N   + +    +  +L+ITVDCG TS      A   G+++I+ DHHQ+  E   A  
Sbjct: 120 YGLNCDAIRQLHEEDPQRLLITVDCGITSVQEAALARELGLELIITDHHQMADELPAADC 179

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVC 251
           LV+P   D      HLC AGV   +   + + L   Q     +   L   + L A+ T+ 
Sbjct: 180 LVHPRLPDSDYEFPHLCGAGVALKLAWAVCQKLGDGQKASPQMREYLKCAVGLAAIGTIA 239

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGG 309
           DVVPL+G NR  V  GL     +   GL+ L++   I     +  E++G+ I P +NA G
Sbjct: 240 DVVPLVGENRILVRYGLSALAERAPLGLQELMKVAEIKAGQMLDTEDIGFAIAPRLNAAG 299

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G++ L   LL + +      LA  LD LN+NRR +E  + +QA+  V  +  + ++  
Sbjct: 300 RLGQARLAVELLTTSNQDRASQLAAYLDELNKNRRTVERRIFKQAKEMV-EENAEWEEHH 358

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFDIGKMVSFA 428
            +V+    WHPG++G++A R+ E F +P+  I+ +     G GS RS  GFD+    S  
Sbjct: 359 TLVLAHADWHPGVIGIVANRVSEHFEKPTVLIALDATTRTGQGSARSFAGFDLHAGFSSC 418

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                LV+ GGH  AAGL +E          F ++A +         + +ID  +  + +
Sbjct: 419 --SAHLVRYGGHQAAAGLKIEEDKIENFRQAFAEYAADAPKPSEDELLVRIDAEVCLNEI 476

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQAIA 545
               +  L+  GP+G  NP P F     +L    R +     HL + F+  +++ ++AIA
Sbjct: 477 TKQAVRELDCLGPFGQENPRPQFVATRVQLAEPPRTMGEGGRHLSLVFQQHNTK-IRAIA 535

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           F           M   G    ++    +N +RG +  QL++ D 
Sbjct: 536 FGKGEWA---TQMDEDGGPFSISFAPGINRFRGFESVQLQLKDW 576


>gi|228469634|ref|ZP_04054614.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           uenonis 60-3]
 gi|228308827|gb|EEK17528.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           uenonis 60-3]
          Length = 593

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 160/587 (27%), Positives = 261/587 (44%), Gaps = 23/587 (3%)

Query: 18  WVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           W       E       +     IP +  R+L  R +  +  A+ F +PS+  L  DP ++
Sbjct: 5   WQYTPFTPEEEVGGSQLAHALRIPAVAGRLLYRRGIRTEAEAQRFFHPSLEDLH-DPFLM 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIV 132
            D D A +R+ +A+   E IMI+GDYDVDG  +V+L+ ++L     +    + YIP R  
Sbjct: 64  QDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDD 123

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     GA LII VDCG  + + + YA   GID I+ DHH    +   A 
Sbjct: 124 EGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAA 183

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D       LC  GV F  +         DN  P    L  LLDLVA++   D
Sbjct: 184 AVLDPKRPDCHYPFEELCGCGVAFKFMQA----FGMDNGFPS-ASLFKLLDLVAVSIAAD 238

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V ++  NR     GL    R  + GLK +I+   +    IT  ++ Y IGP INA GR+
Sbjct: 239 LVSVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMADIIYKIGPRINASGRM 298

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+S+D++    ++  +D  N  RR ++ +  ++A  ++L    ++    ++
Sbjct: 299 MNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEA-MQLLQVNPELAHQPIV 357

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WH GI+G++A+R+ E   RP+  ++   D + +GS RS+ G DI  ++  A   
Sbjct: 358 VLYQPDWHKGIIGIVASRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEA--R 414

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+  GGH  AAGLT+          + Q     +      +   ++D  +    V   
Sbjct: 415 DLLLNFGGHTYAAGLTLLPDKLPDFRAYIQSVNAVVDTDRAQSTPIEVDAEIELREVTQR 474

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFES----QDSETLQAIAF 546
           L   ++   PYG  N  P+F           + V         ++       +    IAF
Sbjct: 475 LYTTIQRFAPYGPDNYQPLFVTQQLYDGGGSKAVGRNGEHFKVDAIPSLGSRKHCPGIAF 534

Query: 547 RVYG--TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                   + +           +   +  N++ G    QL V D  P
Sbjct: 535 NQAPAFRFIKKSSAGRASAPFALVYQIDENHFNGVVSLQLLVKDVKP 581


>gi|220909898|ref|YP_002485209.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7425]
 gi|219866509|gb|ACL46848.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7425]
          Length = 813

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 175/587 (29%), Positives = 286/587 (48%), Gaps = 22/587 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW     Q     A  I +   +  ++A+VL+NR + + +  + FL P   L++P PL 
Sbjct: 22  QRWQVAPVQS--RLAEQIARMTGLDPLLAQVLINRGLETPEQVQQFLEPE-SLILPSPLT 78

Query: 75  -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
              D   +   ++QAI   ++I I GDYD DG  S AL++R L       N  IP R+ +
Sbjct: 79  EFADLGLSVELLLQAIAAQKEIAICGDYDADGMTSTALLLRALQALGARVNYAIPSRMQE 138

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N  ++E+F   G QLI+TVD G  ++  +  A   G+ VIV DHH +  E   A A
Sbjct: 139 GYGLNERIVEEFAGSGVQLILTVDNGIAAHRPITRARELGLAVIVTDHHDLPPELPCANA 198

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP  L   S    L   GV +++ V + + L +   +     + +LL+L  L T+ D+
Sbjct: 199 ILNPKLLPHSSPYAGLAGVGVAYILAVSLAQSLGRTEDL-----VTALLELFTLGTIADL 253

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN------ISSPITAENLGYMIGPSINA 307
            PL G+NR +V +GL +  R    G++ALI+          +     E +G+ +GP INA
Sbjct: 254 APLTGVNRRWVKRGLALLPRSRFAGIQALIQVSGGLTSKQENQAFKPEAIGFRLGPRINA 313

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+      LL +DD       AM  +  NQ R+ +   +  +A A++     D+++
Sbjct: 314 IGRIGDPQTVIDLLTTDDPMLAYAQAMVCEQTNQKRQQLCEEIEREAIAQLEAAQLDLER 373

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+V+    WH G++G++A+RL E++G P F  S+EE G+  GS R I  FD+   + +
Sbjct: 374 ERVLVLVHPDWHHGVIGIVASRLVERYGVPVFIGSYEEQGQIRGSARGIPEFDVFGALQY 433

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +L+K GGH  A G ++E      L    + FAH  +      P+  +D  ++ S 
Sbjct: 434 C--QDLLLKFGGHRAAGGFSLEADQLPALRSRLRDFAHLQLQPEQLKPLVTVDVEVHLSQ 491

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIA 545
           +   L   ++   P G GNP PVF     ++   + +     HL++     D ++ Q I 
Sbjct: 492 ITWELYHQIDRLHPCGIGNPEPVFWSAGVEVVEQKRIGKDQAHLKLVLAQTDLDSPQKIQ 551

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           ++      G +        + V  HL  N W G  + +L ++   P 
Sbjct: 552 WKATAWRWGRYY--PLPTHLDVAYHLQSNTWNGETKLELELIGVRPA 596


>gi|146318963|ref|YP_001198675.1| single-stranded DNA-specific exonuclease [Streptococcus suis
           05ZYH33]
 gi|146321172|ref|YP_001200883.1| single-stranded DNA-specific exonuclease [Streptococcus suis
           98HAH33]
 gi|253752032|ref|YP_003025173.1| single-stranded-DNA-specific exonuclease [Streptococcus suis SC84]
 gi|253753857|ref|YP_003026998.1| single-stranded-DNA-specific exonuclease [Streptococcus suis P1/7]
 gi|253755267|ref|YP_003028407.1| single-stranded-DNA-specific exonuclease [Streptococcus suis BM407]
 gi|145689769|gb|ABP90275.1| Single-stranded DNA-specific exonuclease [Streptococcus suis
           05ZYH33]
 gi|145691978|gb|ABP92483.1| Single-stranded DNA-specific exonuclease [Streptococcus suis
           98HAH33]
 gi|251816321|emb|CAZ51950.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           suis SC84]
 gi|251817731|emb|CAZ55482.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           suis BM407]
 gi|251820103|emb|CAR46394.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           suis P1/7]
 gi|292558616|gb|ADE31617.1| RecJ exonuclease [Streptococcus suis GZ1]
 gi|319758400|gb|ADV70342.1| single-stranded DNA-specific exonuclease [Streptococcus suis JS14]
          Length = 737

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 32/591 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            + W  L G     + + I +K  +  + A++L  R + S +    FL PS+  L  DP 
Sbjct: 5   NYDWQLLTGFSD-EQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D DKA  RI +AI N E I+I+GDYD DG  S +++   L        +Y+P+R  D
Sbjct: 63  LLHDMDKAVERIRRAIENYEHILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTD 122

Query: 134 GYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           GYGPN S+ + FI +    LI+TVD G   ++A+ YA   G+DV+V DHH ++     AY
Sbjct: 123 GYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQEMGVDVVVTDHHSMQETLPNAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      HL   GV F +   +   +  D           LLDLVA+ T+ D
Sbjct: 183 AIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHAD-----------LLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL + ++    GL+ LI+   I    I  E +G+ + P +NA GR+
Sbjct: 232 MVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + N    LL   D +E   +A+ +D  N  R+ +  A+ ++A+  +           V 
Sbjct: 292 DDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEAKTMLR------HDRPVQ 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + W+PG++G++A RL E+  +P   +S  EDGK  GS RS+E  DI    +    +
Sbjct: 346 VLAKEGWNPGVLGIVAGRLLEELQQPVIVLS-IEDGKAKGSARSVEAVDI--FKALKDHQ 402

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            + +  GGHA AAG+T+E      L      +       L +     +D  L+   + + 
Sbjct: 403 DLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLD 462

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549
            +   E   PYG  N  PVF   + +++S R +     HL++   ++ +     +AF   
Sbjct: 463 TLKSFEKLAPYGMDNKKPVFYIRDFQVESARTMGQNNAHLKLRI-TKGAAGFDVLAFGKG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                  L  S+ K + +   L VN W G+   QL ++DA       +  +
Sbjct: 522 NL----ALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYNIR 568


>gi|298492126|ref|YP_003722303.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae'
           0708]
 gi|298234044|gb|ADI65180.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae'
           0708]
          Length = 696

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 168/607 (27%), Positives = 287/607 (47%), Gaps = 42/607 (6%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
             S+   RW   L    +   LAI     +  I++++L+NR + + +  + F++P    L
Sbjct: 7   NKSLPNQRWQIALHNPELAENLAIL--TNLSPIISQLLINRGMETPEAVQRFIDPESLSL 64

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
                   D   +   +  AI + EKI I GDYD DG  S AL++R L     + +  IP
Sbjct: 65  PSPLEEFPDLAVSVELLANAITHQEKIAICGDYDADGMTSTALLLRTLRALGADVDYAIP 124

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
            R+ +GYG N  ++E+F  EG  LI+TVD G ++++ +  A   G+ VI+ DHH +  + 
Sbjct: 125 SRMHEGYGINKRIVEEFHGEGVGLILTVDNGISAFEPIARARELGLKVIITDHHDIPQKL 184

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
            PA A++NP  + + S    +   GV +++     + L +   +     +  +L L  L 
Sbjct: 185 PPANAILNPKLIAESSPYRGVAGVGVAYILAACSAQQLGELKGL-----VQPMLALFTLG 239

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS------------------- 289
           T+ D+ PLIG+NR +V +GL    +   PG++ALI+   +                    
Sbjct: 240 TIADLAPLIGVNRRWVKRGLKHLAKSTLPGVQALIQVAGVQASQKIQNSKFKTQNNSDSQ 299

Query: 290 --SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347
               + AE++G+ +GP INA GRIG       LL +DD       AM+ + +N  R+ M 
Sbjct: 300 HLKSLKAEDIGFRLGPRINAIGRIGNPQTVIELLTTDDMGLALERAMQCEQINIQRQQMC 359

Query: 348 SAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
             + ++A A V     + +Q+  V+VV  D WH G++G++A+RL E++G P F  ++E++
Sbjct: 360 EQIEQEAIALVEDLYLNFLQKDRVLVVVKDHWHHGVIGIVASRLVERYGVPVFIGTYEDE 419

Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466
               GS R I  F++ + +       +L K GGH  A G ++   N   L     +FA+ 
Sbjct: 420 TMIRGSARGIPEFNVFEALE--YSHELLWKHGGHKAAGGFSLPADNLLALRSRLSEFANQ 477

Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526
            +      P+ KID   N + +N  L   L    P G  NP+PVF   N ++   ++V  
Sbjct: 478 CLQLQHLKPLLKIDAQANLNQINQELYQQLNVLHPCGIDNPDPVFWTANAQVIEQQIVGK 537

Query: 527 AHLQMTFE---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
            H+++T           ++AIA+R                R+ +   L  N + G+   +
Sbjct: 538 GHIKLTLAQTIDNQQYKIKAIAWRWRDYF-------PLPPRVDIAYKLRENNFGGNISIE 590

Query: 584 LRVLDAS 590
           + ++   
Sbjct: 591 MELIGVR 597


>gi|223939075|ref|ZP_03630959.1| single-stranded-DNA-specific exonuclease RecJ [bacterium Ellin514]
 gi|223892235|gb|EEF58712.1| single-stranded-DNA-specific exonuclease RecJ [bacterium Ellin514]
          Length = 577

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 283/589 (48%), Gaps = 29/589 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
           FRW     Q        +     +  ++A+ LVNR +S   A   FL P ++ L  DP +
Sbjct: 3   FRWSLSPSQPL--LIKQLASVLKVSPLLAQCLVNRGMSNAEALATFLQPRLKEL-ADPFL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L +   A  R+ QA    E +++FGDYDVDG  S AL+   L       N Y+P R+ +G
Sbjct: 60  LPNMAAAVERLFQARQRKESLVVFGDYDVDGVTSTALLAESLRALGWTVNFYLPHRMEEG 119

Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YG +   +E         L++ VDCGST+   + Y   +GIDV+V+DHHQV S    A A
Sbjct: 120 YGLSQEGVENCLRKFPTTLLLAVDCGSTAVTTIDYLRQKGIDVLVLDHHQVSSPAPAAIA 179

Query: 194 LVNPN-----RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN-KVPLNFDLLSLLDLVAL 247
           LVNP        D  S    LC+ G+ F ++  + +  R+        +DL  LLDLVAL
Sbjct: 180 LVNPQLGPTREEDGKSSFRELCSVGLAFKLVHALVKRGREVGLAEAEKYDLRPLLDLVAL 239

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            T+ D+VPL G NR  V  GL        PGL AL +   +++ + A  +G+ + P +NA
Sbjct: 240 GTIADLVPLTGENRILVYMGLQRLSSTVRPGLVALKKVAQVTASMGAYEVGFQLAPRLNA 299

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+  +     LL++ D Q    +A  LD+ N+ R+ +E  ++E+    V  +  + ++
Sbjct: 300 AGRLENAAEALDLLMAPDMQTAVPIAESLDLRNRERQKIEKGIVEEVIGSVRAK-FNPER 358

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             VIV     WH G+VG++A+R+ ++F RP+  +   E  +  GSGRSI GFD+   +  
Sbjct: 359 DYVIVEGQLLWHVGVVGIVASRVLQQFYRPTIIVG-GEGDEWRGSGRSIAGFDLAAALRD 417

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +LV+ GGHAMAAGLT+E      L     + A  ++      P+ ++D  +    
Sbjct: 418 C--DDLLVRHGGHAMAAGLTIEAGKLDLLRVRMNELAQRLIKREELQPLLRLDAEVTLKE 475

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR---VVN--LAHLQMTFESQDSETLQ 542
           +N   +  L+   P G GNP   F   N  +   R    +     H+++      + T +
Sbjct: 476 INFDSLFELDLLKPTGQGNPVVQFMVRN--VTQARPLQRMGAEKQHVKLWLTD-GTATHE 532

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           A+ +                 R  +     +N + G +  QL+VLD  P
Sbjct: 533 AVWWGAGKD------TALPVGRFDLAFAPQINEFAGRRTVQLKVLDWKP 575


>gi|315651023|ref|ZP_07904058.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium
           saburreum DSM 3986]
 gi|315486706|gb|EFU77053.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium
           saburreum DSM 3986]
          Length = 578

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 168/580 (28%), Positives = 289/580 (49%), Gaps = 25/580 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    R   I+ +  I  ++AR++VNR++  +    +LN  +  LM D   L 
Sbjct: 4   KWMLYTKRADFER---ISARFHISPVLARIMVNRDIKEEDFSLYLNNDL-NLMHDAKDLY 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             + A + I+  +   +KI + GDYD+DG  S  ++M+ L H   N ++ IPDRI DGYG
Sbjct: 60  GVEDAYKEIMSEVKKGKKIRVVGDYDIDGVCSSYILMKSLKHFGANVDVRIPDRIKDGYG 119

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY---- 192
            N +++ +  N+   +IIT D G  ++  ++ A N GI VI+ DHH+V  E+   Y    
Sbjct: 120 INDNIINEAANDKVSMIITCDNGIAAHKQMELANNFGIKVIITDHHEVYQEDGKDYLPVA 179

Query: 193 -ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             ++NP R D       +C A V + ++  IY+ L  D K+  + +L  LL++ A+AT+ 
Sbjct: 180 DVVINPKRSDCTYPFKTICGALVAYKLVEYIYKRL-YDGKLYEDSELGDLLEVAAIATIG 238

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           DV+PL+  NR  V  GL       NPGLKALI+   +    I+A ++G++IGP +NAGGR
Sbjct: 239 DVMPLVDENRIIVKNGLKSLMNTKNPGLKALIKATGMEGKKISAYSVGFVIGPCLNAGGR 298

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  + +   + +S +S E    A  L  LN  R+ + +  ++ A   + +   +     +
Sbjct: 299 LENALVALNMFMSKNSDEANEYASHLKELNDERKDLTAGNVKIA---IESAKSEYINDDI 355

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           +V+     H  I G++A R++E  G+P+  +  +F E+G   GSGRSIE +++    +  
Sbjct: 356 LVIYLKNCHESIAGIIAGRVREALGKPTIILTDAFGEEGMIKGSGRSIESYNM--FEALY 413

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + I  K GGH MAAG+++++           K  ++ +          ID  L  S +
Sbjct: 414 EVKDIFEKFGGHHMAAGMSLKKDRLDEFRKKLNK--NSKLTKEDFIQKIWIDIALPFSYL 471

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546
           +I  +  LE   PYG  N  P FA  + K+ S  ++  +   ++M  E  D   +  I F
Sbjct: 472 SIDFVRELEKLEPYGNKNDKPKFARKDIKILSKNILGKSKNVVKMVLEDVDGTRMDGIYF 531

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
                   E       K + +  +  +N + G +  Q+ +
Sbjct: 532 GDGEAFFEEL---KGKKEIDIIYYPDINEYGGRESLQVII 568


>gi|150020204|ref|YP_001305558.1| single-stranded-DNA-specific exonuclease RecJ [Thermosipho
           melanesiensis BI429]
 gi|149792725|gb|ABR30173.1| single-stranded-DNA-specific exonuclease RecJ [Thermosipho
           melanesiensis BI429]
          Length = 977

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 163/561 (29%), Positives = 294/561 (52%), Gaps = 19/561 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +W           +  + ++  IP + A++LV+R  V+ + A  F+NPS   L   P +L
Sbjct: 2   KWELKKI--DKESSEKLAEELDIPLLTAQLLVSRGYVTPESAYRFINPSKNDLR-SPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+A + ++ A      I+++GDYDVDG   VA ++ FLS        +IP+R+  GY
Sbjct: 59  KDMDRAVKYLLLARNKKYPILVYGDYDVDGITGVATLVTFLSKHGWKVKYFIPNRLDVGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G  P +++++  +G +L+++VDCG TS+DA+++A   G+ V++ DHH +KS    A+A+V
Sbjct: 119 GIQPEIVDEYFKKGYRLLLSVDCGITSFDAVKHARELGMYVVITDHHTIKSGIPNAHAVV 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D+          GV + ++  +   L        + ++  LLD+VAL T+ D+V 
Sbjct: 179 DPKREDETYPFKDFAGVGVAYKLISALALELGL-----PDDEVNELLDIVALGTIADMVD 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L+  NR  V +GL    +    GL  L++++NI + IT++++GY + P +NA GR+  + 
Sbjct: 234 LVDENRYIVKEGLKKLNQTQRVGLVQLMKKLNIKN-ITSQDIGYRLAPKLNAAGRLYSAE 292

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              +L+ +++    E LA  L   N  R+ +E+ +  +A  K+  +   I+   +++V G
Sbjct: 293 DAYKLITTNNLSSAEQLAEILMGYNFTRQEIENKIFNEAVYKI--EKSKIKDLPILIVSG 350

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           ++WH G++G++A +L +K+ +PS  IS  EDG G GSGRS++G +I      +       
Sbjct: 351 EKWHAGVLGIVATKLVQKYNKPSLVIS-LEDGMGRGSGRSVDGVNI--FDVLSSFSRYFE 407

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH MA G ++       L D   K   +    + +    +ID VL+   VN  +I+ 
Sbjct: 408 EIGGHPMAVGFSIREEKIDELIDVISKEFVDSHFEVDSK--IEIDTVLDIDEVNDEVINS 465

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G GNP PVF   N  +  IR      ++++M  + ++   ++ I F +     
Sbjct: 466 LSYLEPFGHGNPEPVFLIKNSLVDRIRFFGNVVSNVRMVLKGKNKNVIEGIGFGLRKNYY 525

Query: 554 GEFLMQSRGKRMHVTGHLCVN 574
               + +    + +  ++  N
Sbjct: 526 DIPAIHAVLTSLDIVANIRQN 546


>gi|86607428|ref|YP_476191.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-3-3Ab]
 gi|86555970|gb|ABD00928.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-3-3Ab]
          Length = 818

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 171/616 (27%), Positives = 278/616 (45%), Gaps = 55/616 (8%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPD 71
           I   RW+          A ++ +   +  ++A++L+NR +S   A + +L P    L P 
Sbjct: 4   IPDQRWLFQPVNPL--AAQSLAEAVGVSPVLAQILLNRGLSSPAAVQQYLQPDPVHLPPP 61

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
                D   A   +  AI   E I I GDYD DG  S AL++R L          IP R+
Sbjct: 62  SQDFADLPLAVELLEGAIRRQEPIAICGDYDADGMTSTALLLRALR--GAPVYYRIPSRL 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++++   EG +LI+TVD G  ++  +Q A   G+ VIV DHH +  +  PA
Sbjct: 120 REGYGLNNRMVQELHREGVRLILTVDNGIAAHAPIQLAKELGLTVIVTDHHDLPPQLPPA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP +L   S    +   GV +L+   +      ++   +       L+L  + T+ 
Sbjct: 180 DAILNPKQLPLSSPYRGMAGVGVAYLLAQALAERRGDEHLERVA------LELFTVGTIA 233

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAG 308
           D+ PL G+NR +V +GL +       G++AL+  + ++     +  E +G+ +GP INA 
Sbjct: 234 DLAPLTGVNRLWVRQGLALLPTSQVAGIRALLAVMGMTGSPEELRPEWVGFGLGPRINAI 293

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRIG   LG +LL +DD Q+ E LA + + LNQ R+ M   +  +A  ++  Q  D+QQ 
Sbjct: 294 GRIGRPELGIQLLTTDDPQQAEKLARRCERLNQVRQQMCGRIEAEALEQIARQGRDLQQE 353

Query: 369 SVIVV---EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-SIEGFDIGKM 424
            V+ +      RWH G++GL+A+RL E+FG P F  S    G+  GS R  I  FD+ + 
Sbjct: 354 RVLTILGSPQQRWHKGVIGLVASRLAERFGCPVFIGSQSPQGEITGSARQGIPEFDVFQA 413

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           + F   + +  K GGH  A G ++   N+  L +  ++FA   +      P+ +ID  + 
Sbjct: 414 LEFC--KDLFSKHGGHPAAGGFSLRAENWPLLEERLRQFAQQRLQPEQIRPLVQIDAEVA 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-------NL---AHLQMTFE 534
            + +   L   L+   P G GNP PVF   N ++   +               HL++   
Sbjct: 472 LADLTFDLYRELQRLQPCGIGNPEPVFCSRNLQVLQQQRFCPQPAQRGEDTPGHLRLLLR 531

Query: 535 SQDSETLQ------------------AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
              S  L                   AI +                 ++ +   L    W
Sbjct: 532 DPVSRGLDGAGSSLAAPAKARSRPLWAIWWGGAAAY-------PLPAQIDIAYTLKAKRW 584

Query: 577 RGSKRCQLRVLDASPV 592
               + +L +L   P 
Sbjct: 585 GEETQLELEILGIRPA 600


>gi|323700761|ref|ZP_08112673.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp.
           ND132]
 gi|323460693|gb|EGB16558.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           desulfuricans ND132]
          Length = 569

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 169/580 (29%), Positives = 279/580 (48%), Gaps = 25/580 (4%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W         + A A+ ++  +  ++  +L NR ++       FL+P +R  M +P  + 
Sbjct: 5   WKPRNEGTAPSSAAAMAEELNVSPLIVEILWNRGLTDLGDMDRFLSPLLRH-MANPAAVP 63

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +AA  + +A+     + ++GDYDVDG  + A++  F +        ++P+R+ +GYG
Sbjct: 64  GLTEAAETLARALDRGGTLAVWGDYDVDGITATAVIKEFFALRGREVMHHLPNRMEEGYG 123

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   +E     GA +++TVDCG +    +  A   G+ V+V DHH        A+A+ +
Sbjct: 124 MNVPGVEALHARGADVLLTVDCGISDLAPVARARELGMTVVVTDHHLPGETLPEAHAVCD 183

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P    +      L   GV F+++V +  +L  D       D+  LLDLVAL T+ D+V L
Sbjct: 184 PRLA-EGGPCDDLAGVGVAFMLVVALNNLLPGDKV-----DVRPLLDLVALGTIADIVKL 237

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIGES 314
            G NR  V  GL+V +    PG+ AL    + +    + A  +G+ + P INA GR+G+ 
Sbjct: 238 TGQNRILVKNGLLVIKEARRPGMAALKVVSDYARQAELGAGQIGFHLAPRINAAGRMGDP 297

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++ D      +A +LD +N  RR  E  + ++A A+  T        + +V+ 
Sbjct: 298 EKALNLLLAKDFDSAMPIAEELDAINMERRRQEQEIADEALAQAETMRH----MAGLVLF 353

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE--DGKGIGSGRSIEGFDIGKMVSFAVEEG 432
            D WHPGI+G++A+R+ EK+ RP+  +   +  +G   GSGRSI  F++      A    
Sbjct: 354 ADHWHPGIIGIVASRVAEKYYRPTLLLCAPDGPEGPLKGSGRSIPEFNLH--DGLAQVSD 411

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGHA AAGL+++  N   L + F       + A   TP  K+D  L  S +N  L
Sbjct: 412 VLAGFGGHAQAAGLSLDPSNLEALRERFNAHVVETLGAKPLTPTLKLDHELAFSNINNTL 471

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSETLQAIAFRVY 549
           +  LE   P+G GNP PVFA    ++    +      H+++  E Q     L   A+R+ 
Sbjct: 472 LRELELLQPFGMGNPEPVFATRPVRVAEHALFGREGEHVKLVLEDQESGTKLPGKAWRMA 531

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           G+         +G+ M       ++ +RG     LR+ D 
Sbjct: 532 GS----LTRAVQGRTMRFAFTPKIDRFRGVPSIDLRIRDW 567


>gi|221135229|ref|ZP_03561532.1| single-stranded-DNA-specific exonuclease RecJ [Glaciecola sp.
           HTCC2999]
          Length = 593

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 176/564 (31%), Positives = 268/564 (47%), Gaps = 20/564 (3%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           DI++ + ++R +    + D L    + L+     L     A   +   + + +KI+I GD
Sbjct: 40  DILSAIFLHRGI---ESLDELATGAKDLLH-FNQLNGIQAAVELLFTGLQSQQKIVIIGD 95

Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDC 158
           +D DGA S AL M  L     +     +P+R   GYG +P +++  I +    +++TVD 
Sbjct: 96  FDADGATSTALCMLALRDLGFHSVQYLVPNRFDFGYGLSPEIVDVAIEQYAPDILLTVDN 155

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G   +  + +A   G+ VI+ DHH        A A+VNPN+     G  HL   GV F V
Sbjct: 156 GIACHAGVAHAKAHGLKVIITDHHLPGESLPNADAIVNPNQHYCEFGSKHLAGVGVAFYV 215

Query: 219 LVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
           L      L      P      +L   LD+VAL TV DVV L   NR +V +G+   R  +
Sbjct: 216 LSAFKTHLLSVGWFPDPARAPNLAQYLDIVALGTVADVVKLDKNNRIFVYQGVQRIRAGR 275

Query: 275 GNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
             PG++AL++        +TA +LG+++GP +NA GR+ +   G   L++DD      +A
Sbjct: 276 CRPGIRALLDVASKAPDKVTATDLGFILGPRLNAAGRLEDMAQGIECLLADDYDTARGMA 335

Query: 334 MKLDVLNQNRRLMESAMLEQAE-AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
             LD LN+ RR +E  M EQAE A    Q DD      +V+    +H G++G+LA R+KE
Sbjct: 336 HTLDSLNRQRREIEGQMREQAEAALASIQLDDATLPDGLVLYDADFHQGVIGILAGRIKE 395

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVER 450
           +  RP+   + ++D +  GS RSI G  I  +          I+ K GGHAMAAGL++  
Sbjct: 396 QHYRPTVVFAQQDDHELKGSARSIPGVHIRDVFDEINTRHPHIIKKFGGHAMAAGLSINV 455

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
                    F       +  +        DG L++  + +     L  AGP+G G   P+
Sbjct: 456 QYIDEFTTAFHSVLAKYMAQVPNEAQILSDGQLSSRNMTLDFAHTLVQAGPWGQGFEEPI 515

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     +L S RVV   HL+M  +  D  T+ AIAF +      +       KR+HV   
Sbjct: 516 FD-NIFELVSQRVVGQKHLKMVLKL-DQVTVDAIAFNIDVNTWPDL----NVKRVHVAYK 569

Query: 571 LCVNYWRGSKRCQLRVLDASPVEG 594
           L +N +RG +  Q  V+   P  G
Sbjct: 570 LNINEFRGQQSVQCMVVKFGPAYG 593


>gi|160872655|ref|ZP_02062787.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsiella
           grylli]
 gi|159121454|gb|EDP46792.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsiella
           grylli]
          Length = 575

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 162/569 (28%), Positives = 271/569 (47%), Gaps = 25/569 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ R+   R +     K  L+  ++ L+     LT  ++AA+ + +A+   +++++
Sbjct: 18  GLHPVLQRIYAARGIKS---KAELDYQLQHLLHY-QSLTGIEEAAKCLGEALMQQQRLLV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME-KFINEGAQLIIT 155
            GD+D DGA S AL +  L        +  +P+R   GYG  P ++E     +   LIIT
Sbjct: 74  VGDFDSDGATSSALAVNALRQFGAQHVDFLVPNRFEYGYGLTPEIVELALQTKKPDLIIT 133

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G +S+D +  A   G+ V++ DHH        A A+VNP +  D     HL   GV+
Sbjct: 134 VDNGISSHDGVIAAKAAGLKVVITDHHLPAESLPCADAIVNPQQQGDQFPSKHLAGVGVI 193

Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           F V++ + + LR             ++   LDLVAL TV D+V     NR  V +GL   
Sbjct: 194 FYVMLALRQYLRCHAWFEKMKCALPNMGQFLDLVALGTVADLVSFDRNNRILVSQGLQWI 253

Query: 272 RRQG-NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           ++    PG+ AL+         + A +L + I P +NA GR+ + +LG   L+  D    
Sbjct: 254 KKGKARPGIYALLTLAKCEKEYLVASDLSFTIAPRLNAAGRLADMSLGIACLLETDFNRA 313

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
              A++L  LN+ RR +E+ M  +A   +            I +   RWH G++GLLA+R
Sbjct: 314 YDYALQLSQLNEERRKIENTMKHEAFIILEKIIKKKSLKKGICLYDSRWHQGVIGLLASR 373

Query: 390 LKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGL 446
           L E+  RP+   +   +  +  GS RSI G  I  +++        ++ K GGHAMAAGL
Sbjct: 374 LSERLHRPTIIFADGHQTNELKGSARSIRGVHIRDLLANLALRYPHLMTKFGGHAMAAGL 433

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE-SAGPYGAG 505
           ++++ +F      FQ+            P    DG L   A++I   +++   +GP+G  
Sbjct: 434 SLKKESFDAFSQLFQQECEQQCQTDCL-PAIYTDGELTQEALHIEFAELIRYQSGPWGQD 492

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTF--ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
            P PVF     ++ + R+V   HL+M    +  +++ ++AIAF V            R +
Sbjct: 493 FPEPVFEGC-FRVLTQRLVGDKHLKMVLTTQKGNNKPIEAIAFNVNPH-----WPNHRAE 546

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +     L +NY++G K  QL + +   V
Sbjct: 547 YITACYRLDINYYQGRKTLQLIIENLKIV 575


>gi|298528473|ref|ZP_07015877.1| single-stranded-DNA-specific exonuclease RecJ [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512125|gb|EFI36027.1| single-stranded-DNA-specific exonuclease RecJ [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 573

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 165/578 (28%), Positives = 265/578 (45%), Gaps = 23/578 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
            W  +           + +   I   +  +L  R ++  +  + FL+P +R L P     
Sbjct: 10  NWKLIQTSASPAHIARLAEDLEISPALCSILHQRGMTSLEEMQFFLSPGLRYLQPL-EDW 68

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +AA  I  +  +  +I ++GDYDVDG  S AL+  F     ++   Y+P R+ DGY
Sbjct: 69  PQLQQAADLIASSHDSGNRIAVWGDYDVDGITSAALLKDFFQSKGIDIRCYLPHRVQDGY 128

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N + MEK   EG + +ITVDCG + +  +  A   G+ VI+ DHH   SE  PA  +V
Sbjct: 129 GLNMAGMEKLAGEGIKTLITVDCGISHHSEISRARELGMHVILTDHHLPGSELPPANVIV 188

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP           L   G  F +   + R L          D+  LLDLVAL T+ D+VP
Sbjct: 189 NPQCSPCPYP--GLAGVGSAFFLAAALNRTLP-----GPQMDIRDLLDLVALGTIADLVP 241

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V  GL++      PG+ AL E      +  I A  +G+ +GP INA GR+ +
Sbjct: 242 LDRANRILVKNGLLLLSEGRRPGIYALKEASGLGGTDSIGAGQVGFALGPRINAAGRLDD 301

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                 LL+  D Q+   +A +L+ LN  R+  E  +L+ A  +     ++ +  S +++
Sbjct: 302 PCQALELLLCRDLQQARTIAARLNTLNNERKKTEETILDMARQQA----NNYKDDSGLIL 357

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WHPG++G++A+RL E+F RP   ++  E+G   GSGRSI GF++         +  
Sbjct: 358 FDPDWHPGVLGIVASRLVEEFYRPCLVLT-RENGLIKGSGRSISGFNLY--QGLCSLKSH 414

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH+ AAGL++E  N   L   F +     +          +D +L    ++   +
Sbjct: 415 LTGFGGHSQAAGLSLEPENLEELRTGFSRVISECIGPGPHQKEIVLDALLGLDELSPDFL 474

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFES-QDSETLQAIAFRVYGT 551
             LE   P+G  NP PVF  P  K+    +     H++   +  +    L+   +R    
Sbjct: 475 QELELLQPFGPENPRPVFLSPPLKVLDQSLFGKDKHVRFDLKDPESGVKLRGQFWRQGRN 534

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                L   +GK + +     +N ++G    +L + + 
Sbjct: 535 LKETSL---KGKNLTLAYTPGINVYQGLVSIRLNIREI 569


>gi|332299511|ref|YP_004441432.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176574|gb|AEE12264.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 593

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 159/587 (27%), Positives = 261/587 (44%), Gaps = 23/587 (3%)

Query: 18  WVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           W      +E       +     IP +  R+L  R +  +  A+ F +PS+  L  DP ++
Sbjct: 5   WQYTPFTREEEVGGSQLAHALRIPAVAGRLLYRRGIRTEADAQRFFHPSLEDLH-DPFLM 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIV 132
            D D A +R+ +A+   E IMI+GDYDVDG  +V+L+ ++L     +    + YIP R  
Sbjct: 64  QDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDD 123

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     GA LII VDCG  + + + YA   GID I+ DHH    +   A 
Sbjct: 124 EGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAA 183

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D       LC  GV F  +         +N  P    L  LLDLVA++   D
Sbjct: 184 AVLDPKRPDCHYPFEELCGCGVAFKFMQA----FGMNNGFPS-ASLFKLLDLVAVSIAAD 238

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V ++  NR     GL    R  + GLK +I+   +    IT  ++ Y IGP INA GR+
Sbjct: 239 LVSVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMSDIIYKIGPRINASGRM 298

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+S+D++    ++  +D  N  RR ++ +  ++A  ++L    ++    ++
Sbjct: 299 MNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEA-MQLLQVNPELAHQPIV 357

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WH G++G++A+R+ E   RP+  ++   D + +GS RS+ G DI  ++  A   
Sbjct: 358 VLYQPDWHKGVIGIVASRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEA--R 414

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+  GGH  AAGLT+          + Q            +   +ID  +    V   
Sbjct: 415 DLLLNFGGHTYAAGLTLLPDKLPDFRAYIQGVNAVTTSDRAQSTPIEIDAEIELREVTQR 474

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFES----QDSETLQAIAF 546
           L   ++   PYG  N  P+F           R V         ++       +    IAF
Sbjct: 475 LYTTIQRFAPYGPDNYPPLFVTQQLYDGGASRAVGRNSEHFKVDAIPTLGSKKHCPGIAF 534

Query: 547 RVYG--TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                   + +           +   +  N++ G    QL + D  P
Sbjct: 535 NQAPAFRFMKKSSAGRAIAPFALVYQIDENHFNGIVSLQLLIKDVKP 581


>gi|313886811|ref|ZP_07820516.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923701|gb|EFR34505.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 593

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 159/587 (27%), Positives = 261/587 (44%), Gaps = 23/587 (3%)

Query: 18  WVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           W      +E       +     IP +  R+L  R +  +  A+ F +PS+  L  DP ++
Sbjct: 5   WQYTPFTREEEVGGSQLAHALRIPAVAGRLLYRRGIRTEADAQRFFHPSLEDLH-DPFLM 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIV 132
            D D A +R+ +A+   E IMI+GDYDVDG  +V+L+ ++L     +    + YIP R  
Sbjct: 64  QDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDD 123

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   ++     GA LII VDCG  + + + YA   GID I+ DHH    +   A 
Sbjct: 124 EGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAA 183

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R D       LC  GV F  +         +N  P    L  LLDLVA++   D
Sbjct: 184 AVLDPKRPDCHYPFEELCGCGVAFKFMQA----FGMNNGFPS-ASLFKLLDLVAVSIAAD 238

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V ++  NR     GL    R  + GLK +I+   +    IT  ++ Y IGP INA GR+
Sbjct: 239 LVSVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMSDIIYKIGPRINASGRM 298

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                   LL+S+D++    ++  +D  N  RR ++ +  ++A  ++L    ++    ++
Sbjct: 299 MNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEA-MQLLQVNPELAHQPIV 357

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+    WH G++G++A+R+ E   RP+  ++   D + +GS RS+ G DI  ++  A   
Sbjct: 358 VLYQPDWHKGVIGIVASRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEA--R 414

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+  GGH  AAGLT+          + Q            +   +ID  +    V   
Sbjct: 415 DLLLNFGGHTYAAGLTLLPDKLPDFRAYIQGVNAVTTSDRAQSTPIEIDAEIELREVTQR 474

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFES----QDSETLQAIAF 546
           L   ++   PYG  N  P+F           R V         ++       +    IAF
Sbjct: 475 LYTTIQRFAPYGPDNYPPLFVTQQLYDGGASRAVGRNSEHFKVDAIPTLGSKKHCPGIAF 534

Query: 547 RVYG--TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                   + +           +   +  N++ G    QL + D  P
Sbjct: 535 NQAPAFRFMKKSSAGRAIAPFALVYQIDENHFNGIVSLQLLIKDVKP 581


>gi|222151520|ref|YP_002560676.1| hypothetical protein MCCL_1273 [Macrococcus caseolyticus JCSC5402]
 gi|222120645|dbj|BAH17980.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 753

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 166/576 (28%), Positives = 281/576 (48%), Gaps = 31/576 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W      + I  A  + +K+ I +I  ++L +R++  + A   +   +   + DP  + D
Sbjct: 6   WTVKKPVDTIPAA--LIKKYDITEINRKILESRHIVTEAALHDIF--VADDIHDPFAMHD 61

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             KA +RI  AI N+E I+++GDYD DG  SV +++  L         YIP+R  +GYGP
Sbjct: 62  MSKAVKRIQTAIDNNEMILVYGDYDADGVTSVTVLVNSLKSIGAKVGWYIPNRFTEGYGP 121

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N     +  + G  LIITVD G   +  +  A   GIDVI+ DHH++      AYA+++P
Sbjct: 122 NEQAFREAHDAGISLIITVDNGIQGHHEVNVANELGIDVIITDHHEIGQTLPDAYAILHP 181

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
              D      HL   GV + +   +   + +            LL  VA+ T+ D+V L 
Sbjct: 182 MHPDGSYPFHHLAGVGVSYKLACALNGQMNE-----------HLLGFVAIGTISDLVSLT 230

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G NRA V +GL         GLKAL+++ + +  IT E +G++IGP +NA GR+ ++ L 
Sbjct: 231 GENRALVKRGLKALNVDTPIGLKALLKQASFNGEITEETVGFIIGPRLNAVGRLDDARLA 290

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             LL  D+  E E ++ ++D  N  R+ + S++ EQA   V  +  +  +   IVV  + 
Sbjct: 291 CELLQIDNEDEAEWMSEQVDQFNIERKEIVSSITEQALIDVEEKIANGNR--FIVVAKEG 348

Query: 378 WHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
           W+ G++G++A+R+ E++  P+  ++   + G   GS RSI    +   +       ++ K
Sbjct: 349 WNEGVLGIVASRITEQYHLPAIVLNIDYDKGYAKGSARSIAQVSMYDSLEE--TRNLITK 406

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH MAAG+T+   N  RL          ++   I     +ID  +  S + I  I+ +
Sbjct: 407 FGGHHMAAGMTLPIENIERLEQALNNHLDTLIDGEIIQE-IEIDAAVEMSDITIKNINDM 465

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLG 554
           +   P+G     P+ +  N KL  ++ +     HL+MT ++    TL A+ +       G
Sbjct: 466 DKLRPFGTDFSAPLLSLMNAKLTDVKQIGQNQAHLKMTVQN----TLNALMWNEGARISG 521

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  G ++++ G L +N W G+ + Q+ V    
Sbjct: 522 ----LPVGSQVNLAGTLQLNEWNGNVQPQMIVRHIK 553


>gi|256545118|ref|ZP_05472484.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399159|gb|EEU12770.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           vaginalis ATCC 51170]
          Length = 581

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 167/589 (28%), Positives = 280/589 (47%), Gaps = 30/589 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +      L   +   I  + A +L NR++        F+NP++  L  DP +L
Sbjct: 8   KWYIYNKKNNYLSNL---KNKNITKLEALILANRDIVDPKVVDSFINPTLAKLH-DPFLL 63

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA   I++ + N E I IFGDYD DG +S   ++  L +   + +  IPDR++DGY
Sbjct: 64  KDMEKAIDLIIETMENGESIRIFGDYDQDGISSTMTLLDGLLYFYDDISYDIPDRVIDGY 123

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH---------QVKS 186
           G +  ++++ I     L+IT D G T+ D ++     GI VIV DHH          V+ 
Sbjct: 124 GISDRMIDRAIEANVSLVITCDNGITAIDQVKKLKENGIKVIVTDHHQVSKKEDGEWVEQ 183

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A  ++NP RLD+      LC AGV F ++  +Y+ L  D        L  LL+ VA
Sbjct: 184 ILPQADCVINPKRLDNTYPFDDLCGAGVAFKLIQALYQRLDGD-----MEYLYGLLEYVA 238

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCDVV L   NR +V +GL          +KAL+E  + +  ++A  LG++IGP +N
Sbjct: 239 MGTVCDVVSLTDENRIFVREGLKRINNTEKLAIKALVEENSWNREVSAYTLGFIIGPCMN 298

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  + L   +L+ DD +++   A KL  LN  R+ + +  LE+    +  +     
Sbjct: 299 ATGRLSTAKLAIDMLMEDDIEKIRTYAKKLVSLNTERKELTNIGLEKTLEIIKDK--KYY 356

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMV 425
              +I+V+ +     I G++A R+KEKF +P+  ++     G   GSGRSIE ++I K V
Sbjct: 357 NDDIIIVDVENIEESICGIIAGRIKEKFNKPTIIMTQSSQNGILKGSGRSIEAYNIYKEV 416

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + IL   GGH MA GL++                 + +       +  ID  +  
Sbjct: 417 FE--IKDILESFGGHPMACGLSIRSDKVEEFRQKLND--KSKLKKDDFVNIINIDAQIPI 472

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAI 544
             +++   + L+   P+G  NP   FA  N  +++I ++   +  M    +++   ++AI
Sbjct: 473 DKLSLEFAESLQRLEPFGKDNPKAKFADKNLFIKNINMIGKNNNTMKMILNKNGRDIEAI 532

Query: 545 AFRVYGTPL---GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F           +F     G R+    +  +N + G +  Q++++D  
Sbjct: 533 KFNAQKDYKYLSDKFKANIIGNRIDAVFYPDINEFNGRRNLQVKLIDIR 581


>gi|227431958|ref|ZP_03913978.1| single-stranded DNA-specific exonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352243|gb|EEJ42449.1| single-stranded DNA-specific exonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 655

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 171/587 (29%), Positives = 285/587 (48%), Gaps = 27/587 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72
           +   W  L  Q        ++ +  I   ++ ++  R  +   A   +L PS+  L  DP
Sbjct: 2   NQNNWNILP-QPSEKVVRQLSAQLNISQFMSTIVAQRGYTDPEAAFKYLQPSVEQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L D D+   R+  A + SEKI+++GDYD+DG  S A+M+  L     +   YIP+R  
Sbjct: 60  MLLHDMDRTIERLQDAAFGSEKIVVYGDYDMDGVTSTAIMVEALEVLGADVTPYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    +K I +GAQLI+TVD G +  +A++YA +QGIDVI+ DHH++ +    AY
Sbjct: 120 DGYGPNIDTYKKLIADGAQLIVTVDNGVSGQEAVEYAMSQGIDVIITDHHEMPATLPNAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL-LSLLDLVALATVC 251
           A+++P         G L  AGV F V   +   L +   V    +L   LLDLVAL  + 
Sbjct: 180 AVIHPRHPKGQYPFGDLSGAGVAFKVAQAL---LNEGQPVEDQTELPTELLDLVALGEIS 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGG 309
           D+V L   NR  V  GL        PGL A+++         + +E + + I P +NA G
Sbjct: 237 DMVSLTDENRVLVSWGLKQINVSPRPGLTAVLKNAGKKDNEPVISETVSFKIAPRLNAVG 296

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G+++L  +LL+S D +E   +A +++ +N  R+ +   +   A+       D+ +   
Sbjct: 297 RLGDASLSLKLLLSQDPEESTAIASEVEAINAQRQEIVEEVFGSAKQMA--LSDEYKNDQ 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+++ G  WH GI+G++A+RL E   +P+  +S  + G   GSGR+   FD+ + ++   
Sbjct: 355 VLIIAGQDWHQGILGIVASRLVELLQKPTIVLSLMD-GVYKGSGRTFGDFDLYQFMN--T 411

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +    GGHA A GL +       L D  +  +  +    I      I+  L+ + ++
Sbjct: 412 FHDLYDTFGGHASALGLAIFPEQLDVLKDQLRLNSAKL---QIHVKPISINTTLSVNEIS 468

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
               + L    P+G GN  PVF     K+  +  +     H+++  E+     ++A+ F 
Sbjct: 469 TETYEELRLLEPFGTGNQQPVFGLQQPKINKVTTMGNLKQHIKLALENN----VEAVGFN 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                    +    G  +     L +NY+RG K  QL +   +  E 
Sbjct: 525 HPD--WVPMVANPVG--ISFAATLGINYFRGRKTIQLLLTAINTSEA 567


>gi|307297759|ref|ZP_07577565.1| single-stranded-DNA-specific exonuclease RecJ [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306917019|gb|EFN47401.1| single-stranded-DNA-specific exonuclease RecJ [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 1047

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 172/579 (29%), Positives = 282/579 (48%), Gaps = 18/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
             W+ L  +        + +   I   +AR+LV R +  +  A  FLNP  + ++ DP +
Sbjct: 3   KEWLLL--KPDDEAVNRLVEFMGIDAFLARLLVTRGIDNEVEAMKFLNPD-KTILHDPFL 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D   A R I++    +E I++FGDYDVDG  S AL+   +     N + YIP R+ +G
Sbjct: 60  LEDMPLAVRTIIETRDRNESIVVFGDYDVDGVTSTALLYLAMKRMGFNVSYYIPLRLEEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG +   ++   ++G  L+ITVDCG TS+D +++A   G +V+V DHH+VK    PA A+
Sbjct: 120 YGLSKDAIKDLRDQGHSLLITVDCGVTSFDEIKFAKEIGFNVVVTDHHEVKDLLPPADAV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R DD      L   GV F +LV +   L      P++      LD+VAL T+ D+V
Sbjct: 180 VNPKRPDDDYPFKGLAGVGVAFKLLVALNETL----HCPIDP--EEYLDIVALGTIADIV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL   NR  V +G    +     GLKAL+  +   S  +TA+++ + I P +NA GR+  
Sbjct: 234 PLRDENRYIVKEGTAKIQSSPLLGLKALLSYLRIPSENLTAQDIAFKIAPKLNAAGRMDS 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + +   LLIS+D       A +L   NQNR+ +E+ + EQ E  +       +    +V+
Sbjct: 294 AIVALELLISEDMDSAMNTASRLLKHNQNRQTIEAKIFEQTERDL-ENTASFKDDFALVI 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           +GD WH G++G++A+RL     +P F I+        GS RS  G  I  +++     G+
Sbjct: 353 DGDNWHLGVLGIVASRLVSIHNKPVFLIATNGSDG-KGSARSPAGVSIISLLNEV--SGL 409

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH MAAG ++++                +           +D VL   ++  +++
Sbjct: 410 LREFGGHEMAAGFSIDKEKISEFRSAINDAYIKLYGLKQPVFKIDVDDVLTLDSITPSIL 469

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
           D LE   P+G  NP P F      ++  ++      H+++   S D +TL AI + +   
Sbjct: 470 DKLELLRPFGHSNPEPKFLIKGLNIEKAKMFGSGSDHVKLILRSGDRKTL-AIGYNMGTM 528

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 ++    ++     +  +   G +  +L + DA 
Sbjct: 529 FDDFKYVKPNLLKVDAIASIKNDNLYGLQSVKLSLSDAR 567


>gi|171910566|ref|ZP_02926036.1| single-stranded-DNA-specific exonuclease RecJ [Verrucomicrobium
           spinosum DSM 4136]
          Length = 620

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 171/596 (28%), Positives = 280/596 (46%), Gaps = 25/596 (4%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHA--IPDIVARVLVNRNVSID-YAKDF 60
           +  L    S    RW+       +  +L  +      +P ++ R+L  R ++ +  AK F
Sbjct: 44  RPLLMPISSQKAVRWILEPVDPEVLASLR-STTLGATLPPLLVRLLALRGLATEAQAKGF 102

Query: 61  LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120
           L P +  L  DP IL    +A  RI+ A+   E+++++GDYDVDG  S+ LM   L    
Sbjct: 103 LQPRLAEL-GDPFILPQMRQAVDRILLAVDRQEQVVLYGDYDVDGVTSLTLMTLVLQAYG 161

Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVIV 178
           +  + ++P R+ +GYG +   + +   E     L+I +DCG+ S     +   +G+D I+
Sbjct: 162 LQPHAFLPLRMEEGYGLSHDGLLRCFEEHGKPALLIAMDCGTVSVAETDWLQQEGVDCII 221

Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238
           +DHH+         ALVNP  L+  +G  + C  G+VF +   + +  R D      FDL
Sbjct: 222 VDHHEPAHRLPTCVALVNPK-LEAHTGLTYFCTVGLVFKLTHALLKTRRLD-----TFDL 275

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
              LDLVA+ TV D+VPL   NRA V KGL         GL AL +   +   I A ++G
Sbjct: 276 KEHLDLVAMGTVADLVPLKDENRALVRKGLEKLATTRRVGLCALKQVAGVDGFIQAHHIG 335

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           Y +GP +NA GR+  +     LL+ +D Q     A  LD  N+ R+ +ES   ++A A +
Sbjct: 336 YRLGPRLNAAGRLDTAQTALDLLLCEDPQFARECADLLDAHNRERQDVESVAQKEALAMM 395

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
                 + +A+ IV+    WH G+VG++A+RL     RP+  ++F +DG G GSGRS+ G
Sbjct: 396 AADPT-LGEAACIVLGSRSWHQGVVGIVASRLMRDHHRPTLLLAFGQDGHGKGSGRSVTG 454

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
             +   +       +L+KGGGH MA G++++  N             + + A   TP   
Sbjct: 455 ISLVAALDQC--RHLLLKGGGHPMAVGVSLKEENLADFRAAMSAAVESQITADELTPRLH 512

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLAHLQMTFESQD 537
           +   ++ S +    ++      P+G GN  P+F     + +   +V+   H ++T   Q 
Sbjct: 513 LSAEISLSDLTPRFLEQYTLLEPFGMGNHEPIFLCRGMEPILPGQVLKEKHWKLTLR-QG 571

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            ++  A+ F          L         V   +    WRG +  QL + +    E
Sbjct: 572 GQSRPAMWFNAP-------LNDIPPPPWDVALKVQRQVWRGQETWQLMISEVREAE 620


>gi|309809306|ref|ZP_07703175.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170419|gb|EFO72443.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 761

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 159/572 (27%), Positives = 279/572 (48%), Gaps = 28/572 (4%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             ++  +    +  K+ +  I A++   R+++ D   DF   +    + DP ++ D  K 
Sbjct: 4   KKKQAESLDKDLITKYKLSPIQAKLFAIRSINTDQQLDFWLNADETKLADPFLMHDMKKT 63

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+   
Sbjct: 64  VDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            ++ ++ G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  +
Sbjct: 124 YQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                   C AGV + +   +           +  ++  LLDL  + T+ D+V + G   
Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MADNMSELLDLAMIGTIGDMVKVSGEGH 232

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   L
Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H 
Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GGH
Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             A GL++++ +  +L + F+     +  + +       D  LN + + +     +   G
Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKVG 466

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L 
Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YLD 519

Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
            +    +H+    L +N W    + Q  + D 
Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|223933271|ref|ZP_03625261.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis
           89/1591]
 gi|302024044|ref|ZP_07249255.1| single-stranded-DNA-specific exonuclease [Streptococcus suis
           05HAS68]
 gi|330832497|ref|YP_004401322.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis
           ST3]
 gi|223898085|gb|EEF64456.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis
           89/1591]
 gi|329306720|gb|AEB81136.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis
           ST3]
          Length = 737

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 178/591 (30%), Positives = 285/591 (48%), Gaps = 32/591 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
            + W  L G     + + I +K  +  + A++L  R + S +    FL PS+  L  DP 
Sbjct: 5   NYDWQLLTGFSD-EQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D DKA  RI +AI + E+I+I+GDYD DG  S +++   L        +Y+P+R  D
Sbjct: 63  LLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTD 122

Query: 134 GYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           GYGPN S+ + FI +    LI+TVD G   ++A+ YA   G+DV+V DHH ++     AY
Sbjct: 123 GYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQEMGVDVVVTDHHSMQETLPNAY 182

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      HL   GV F +   +   +  D           LLDLVA+ T+ D
Sbjct: 183 AIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHAD-----------LLDLVAIGTIAD 231

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL + ++    GL+ LI+   I    I  E +G+ + P +NA GR+
Sbjct: 232 MVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRL 291

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + N    LL   D +E   +A+ +D  N  R+ +  A+ ++A+  +       Q   V 
Sbjct: 292 DDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEAKTMLR------QDRPVQ 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+  + W+PG++G++A RL E+  +P   +S  EDGK  GS RS+E  DI    +    +
Sbjct: 346 VLAKEGWNPGVLGIVAGRLLEELQQPVIVLS-IEDGKAKGSARSVEAVDI--FKALKDHQ 402

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            + +  GGHA AAG+T+E      L      +       L +     +D  L+   + + 
Sbjct: 403 DLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLD 462

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549
            +   E   PYG  N  PVF   + +++S R +     HL++   S+ +     +AF   
Sbjct: 463 TLKSFEKLAPYGRDNKKPVFYIRDFQVESARTMGQNNAHLKLRI-SKGAAGFDVVAFGKG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                  L  S+ K + +   L VN W G+   QL ++DA       +  +
Sbjct: 522 NL----ALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYNIR 568


>gi|150019133|ref|YP_001311387.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905598|gb|ABR36431.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           beijerinckii NCIMB 8052]
          Length = 588

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 174/601 (28%), Positives = 287/601 (47%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW     +        I++K+A+ ++V+R++VNRN+  D   + ++NP           +
Sbjct: 4   RWFIKNIKADY---KYISKKYALSELVSRLIVNRNIISDEMIRSYINPDFDKFHEA-REM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +K+   + + I    KI I GDYDVDG  S+ ++   L  C+ N +  IPDRI DGY
Sbjct: 60  KDLEKSVDILREKIKAQNKIRIVGDYDVDGVISIYILYSALKRCNANVDYEIPDRIKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N +++++   +G   I+T D G ++ D ++YA   GI VIV DHH +   E       
Sbjct: 120 GINMNIIKQAKEDGVDTILTCDNGISAIDQIKYAKELGITVIVTDHHDIPFVEKENNVRE 179

Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  A+VNP + +       LC AGV F ++ ++Y     D       +    ++ +
Sbjct: 180 FISLSADAVVNPKQSECNYKFKQLCGAGVAFKLVEILYETFNIDK-----KECYKFIEFL 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATVCDVV L+  NR +V KGL +     N GL+ LI         ++  +LG++IGP 
Sbjct: 235 AIATVCDVVDLVDENRIFVKKGLELINSTTNLGLQELIRECELTEKTLSVYHLGFIIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +  G +LL+SDD +E   LA +L  LN++R+ M    +E A   +  +   
Sbjct: 295 INASGRLDSAKRGLKLLLSDDEEEAVRLAKELVKLNEDRKDMTMNGVEAAVEII--EKSG 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           +    V V+     H  + G++A R+KEK+  P+  I+  E G   GSGRSIE +++   
Sbjct: 353 MINDKVFVIYIPDIHESLAGIIAGRIKEKYNVPTLVITKAEHGV-KGSGRSIEEYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +L K GGH MAAG +++  N         +  + I+          ID VL 
Sbjct: 410 EELIKCKDLLEKFGGHPMAAGFSLKEENIDEFRRRLNE--NTILKDEDLLRKVTIDSVLP 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
             A+N  +I+ LE   P+G  N  P+FA  N  L    ++      L++  +++ ++ L 
Sbjct: 468 LDAINYDVINDLERLEPFGKSNSKPLFAEKNINLLKATILGKNRNVLKLKLKTRMNKALD 527

Query: 543 AIAFRVYGTPLGEFLMQSRGK-------------RMHVTGHLCVNYWRGSKRCQLRVLDA 589
           AI F        E   +   +              + +  +  VN + G+   Q+ + + 
Sbjct: 528 AIYFGDIEKFEEEVSSKYGNEELQKLYNGEYNHVNLDLVFYPNVNEYNGNTTIQIVIQNY 587

Query: 590 S 590
            
Sbjct: 588 R 588


>gi|282896523|ref|ZP_06304543.1| RecJ exonuclease [Raphidiopsis brookii D9]
 gi|281198629|gb|EFA73510.1| RecJ exonuclease [Raphidiopsis brookii D9]
          Length = 581

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 275/582 (47%), Gaps = 23/582 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLI 74
            RW     ++    A  +   + +  I+ ++L+NR +        F+NP    L      
Sbjct: 13  QRWHI--AKQNQELAQNLASVNNVSPIIGQLLINRGMETPEIATRFINPECINLPSPLDE 70

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D   +   +  AI N EKI I GDYD DG  S AL++R L     N +  IP R+ +G
Sbjct: 71  FPDLVISVELLASAIRNHEKIAICGDYDADGMTSTALLLRSLGALGANIDYAIPSRMHEG 130

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  ++E+F  EG  LI+TVD G  +++ +  A   G+ VI+ DHH +  +   A A+
Sbjct: 131 YGINKRIVEEFHREGVSLILTVDNGIAAFEPIARAKELGLKVIITDHHDLPPQLPIADAI 190

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP  +   S    L   GV +++ V + + L +     +   +  +LDL  L T+ D+ 
Sbjct: 191 LNPKLISLSSPYRGLAGVGVAYVLAVCLAQHLEK-----ITGLVQPMLDLFTLGTIADLA 245

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIG 312
           PL G+NR ++ +GL    +   PG++ALI+   +     +  E++G+ +GP INA GRIG
Sbjct: 246 PLTGVNRRWIKRGLKSLYKSNLPGVQALIQVSGVQDSKSLKPEDIGFRLGPRINAVGRIG 305

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVI 371
              +   LL +DD       AM+ + +N  R+ +   +  +A   V      ++ Q  V+
Sbjct: 306 NPQIVIELLTTDDMGIALERAMQCEQINAERQKICEEIQGEAILLVENLYAQNLHQDRVL 365

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV  D WH G++G++A+RL E++G P F  ++E +    GS R I  F++   + F    
Sbjct: 366 VVVKDNWHHGVIGIVASRLVERYGVPVFIGTYENNDLVRGSARGIPEFNVFDALEF--SS 423

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L K GGH  AAG ++   N         +FA+  +      P+ +IDG +N   +N  
Sbjct: 424 DLLHKHGGHKAAAGFSLPAANLENFRLRLSEFANQCLEVQHLKPLLRIDGQINFCQINRD 483

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE---SQDSETLQAIAFRV 548
           L   L    P G  NP+P+F  P  ++   +++    +++T           ++A+A+R 
Sbjct: 484 LFQQLNILHPCGIENPDPMFWTPQVRVVEQQMIGKGSIKLTLAQIIDNTRYEIRALAWRW 543

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                           + +   L  N + G+   +L ++   
Sbjct: 544 GDYF-------PLPFTIDIAYKLRENNFNGANDIELELVGVR 578


>gi|225017245|ref|ZP_03706437.1| hypothetical protein CLOSTMETH_01171 [Clostridium methylpentosum
           DSM 5476]
 gi|224950020|gb|EEG31229.1| hypothetical protein CLOSTMETH_01171 [Clostridium methylpentosum
           DSM 5476]
          Length = 678

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 176/585 (30%), Positives = 287/585 (49%), Gaps = 23/585 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
            +W    G E   R   I +   +   +A +L  R +  D   D L       +  P  L
Sbjct: 4   RKWQYRAGAE--ERIQEIEETFGVSRFLAGILATRGLQDDQINDLLG---ETELESPFAL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  RI +A+   EKI ++GDYD DG  S A++  +LS        YIP+R   GY
Sbjct: 59  KDMDKAVERINRAVEAGEKIAVYGDYDCDGITSTAVLCTYLSSIGAEVTHYIPERDDGGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++    EG QL+ITVD G T+ +   YA   G+++I+ DHH+V      A A++
Sbjct: 119 GLNRPALDHLKGEGVQLLITVDNGITAVEEADYAAQLGMELIITDHHRVGDTLPQAVAVI 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P R D  S    L   GV F ++  +     +D      F      DLVA+ TV DVVP
Sbjct: 179 DPQREDCPSRYKFLAGVGVAFKLVAAM-----EDGDYESTF--SYFGDLVAIGTVGDVVP 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGES 314
           L G NR  V +GL       N GL A+ ++  I  + +T++ + + I P INA GR G +
Sbjct: 232 LTGENRTIVKRGLKQIEFSENIGLGAIFDKAKIAKTNVTSQYIAFGIVPRINAAGRFGMA 291

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N    LL+ +D ++ + +A +L+ LN  R+ +E  + +Q   ++      +    V+V  
Sbjct: 292 NKVFDLLMCEDEKQCKKMATELNQLNMQRQEIEQEIQQQIREELTANPRKLYNR-VLVFA 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + W  GI+G+++AR+ E +GRPS  ++ EE G   GS RS++GF I +         + 
Sbjct: 351 REGWPHGIIGIVSARVTETYGRPSVLLAIEEGGVARGSARSVDGFSIYEA--LDANRSLC 408

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH+ AAGLT++  N   L      +A       +  P ++ID  +NAS + +  ++
Sbjct: 409 EKMGGHSAAAGLTIKAENIPALEQGLNDYAREHC-ERMPEPTYQIDFTVNASDLTVQNVN 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPL 553
            L    P+GA +P+P+F   N +L ++  +    H+++   ++    +QAI F V  +  
Sbjct: 468 SLAMLEPFGAQSPSPLFLIKNARLDAVVPLSGGKHIKLKLITETG-IIQAIYFGVQRS-- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
                   G  +++   L ++++ G +   ++V D  PV    + 
Sbjct: 525 --CFYYQPGAVLNLLVALDISFFNGVQTVSVKVKDVRPVTFEQYK 567


>gi|312871401|ref|ZP_07731496.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 3008A-a]
 gi|311093054|gb|EFQ51403.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners
           LEAF 3008A-a]
          Length = 761

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 159/572 (27%), Positives = 279/572 (48%), Gaps = 28/572 (4%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             ++  +    +  K+ +  I A++   R+++ D   DF   +    + DP ++ D  K 
Sbjct: 4   KKKQAESLDKDLITKYKLSPIQAKLFAIRSINTDQQLDFWLNADETKLADPFLMHDMKKT 63

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             RI QAI   EKI ++GDYD DG  + ++M+  LS    + + +IP+R  DGYGP+   
Sbjct: 64  VDRINQAIDKGEKITVYGDYDADGITATSIMVESLSILGADVDFFIPNRFDDGYGPSLER 123

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
            ++ ++ G +LIITVD G T  + + YA   G+D IV DHH  + E   AYA+V+ N  +
Sbjct: 124 YQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                   C AGV + +   +           +  ++  LLDL  + T+ D+V + G   
Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MADNMSELLDLAMIGTIGDMVKVSGEGH 232

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V +GL +      PGL+ALI+   +    I A ++G+ I P INA GR+ ++NL   L
Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q    Q    +V+    +H 
Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++   +       +L K GGH
Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             A GL++++ +  +L + F+     +  + +       D  LN + + +     +   G
Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKVG 466

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP PVF+  N  +  +  +     H++M   +  +E L  I F         +L 
Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YLD 519

Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
            +    +H+    L +N W    + Q  + D 
Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551


>gi|323526606|ref|YP_004228759.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           CCGE1001]
 gi|323383608|gb|ADX55699.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           CCGE1001]
          Length = 568

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 180/568 (31%), Positives = 269/568 (47%), Gaps = 32/568 (5%)

Query: 36  KHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           +H +  ++AR+   R V   D  +      +  L+P P  L  CD AA  +  AI    +
Sbjct: 19  RHGLHPVLARLYAARGVCLPDEIET----GLARLVP-PAALKGCDGAAVLLADAIEQKRR 73

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFINEGAQ 151
           +++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++    +  +   +
Sbjct: 74  MLVVADYDCDGATACAVAVRGLRMFGGQIDYLVPNRFEYGYGLTPEIVALAAQRASGKPE 133

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  S + ++ A   GIDV+V DHH    +   A A+VNPN+         +  
Sbjct: 134 LLITVDNGIASVEGVEAANALGIDVLVTDHHLPGDQLPAARAIVNPNQPGCEFPSKCMAG 193

Query: 212 AGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
            GV+F VL+ +   LR+            L  LLDLVAL TV DVV L G NR  V +GL
Sbjct: 194 VGVMFYVLLALRAELRRRGAFGDAFPEPRLDGLLDLVALGTVADVVKLDGNNRVLVAQGL 253

Query: 269 MVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R+       A + R        A   +LG+ +GP +NA GR+ + +LG   L +DD 
Sbjct: 254 QRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSDMSLGIECLTTDDV 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
                LA +LD +N+ RR +E+ M +QA   + +   D   A+ I +    WH G++G++
Sbjct: 314 GRAWELAQQLDTMNRERREIEAGMQQQALDDLSS--IDPDGATTITLFNPAWHQGVIGIV 371

Query: 387 AARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAM 442
           A RLKEKF RP+F  +  +D      GSGRSI GF +   +      E G++VK GGHAM
Sbjct: 372 AGRLKEKFHRPAFTFALADDSGRLVKGSGRSIAGFHLRDALDLISKREPGLIVKFGGHAM 431

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AAGLT+   +  R    F+      +     +   + DG L  +      ++ML+ A  +
Sbjct: 432 AAGLTLATADVPRFTAAFEAVGREWLTDDALSRTVETDGELEDAYFTPQFVEMLD-AAVW 490

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
           G G P PVF+     + S  +V   HL++    +  +   AI F    T           
Sbjct: 491 GQGFPAPVFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHTDT---------LP 539

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            R  V   L  + W G  R QL V  A+
Sbjct: 540 ARTTVAYRLASDTWNGVSRVQLIVEHAA 567


>gi|27468236|ref|NP_764873.1| single-strand DNA-specific exonuclease [Staphylococcus epidermidis
           ATCC 12228]
 gi|57867139|ref|YP_188775.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis RP62A]
 gi|251811041|ref|ZP_04825514.1| recombination protein RecJ [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875940|ref|ZP_06284807.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis SK135]
 gi|27315782|gb|AAO04917.1|AE016748_151 single-strand DNA-specific exonuclease [Staphylococcus epidermidis
           ATCC 12228]
 gi|57637797|gb|AAW54585.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis RP62A]
 gi|251805459|gb|EES58116.1| recombination protein RecJ [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294965|gb|EFA87492.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis SK135]
          Length = 757

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 153/591 (25%), Positives = 275/591 (46%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     Q     + + + +  +  IV +VL ++N+      ++    +   +  D 
Sbjct: 4   SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  +      G+DVIV DHH++      A+
Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   +     Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +GL +        +KA++ +   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRYIVKQGLKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD+ +E E LA +++  N  R+ + S + ++A      Q    Q    ++
Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIK--QGHLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ +E      GS RSIE   +         +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L      +   +       P  K+D  L    +NI 
Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +    P+G    +P+F   +  ++S + +     HL++T        L A+ +   
Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       G+ +H+ G L +N W G++  Q  + D +  +      +
Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568


>gi|227514770|ref|ZP_03944819.1| recombination protein J [Lactobacillus fermentum ATCC 14931]
 gi|227086879|gb|EEI22191.1| recombination protein J [Lactobacillus fermentum ATCC 14931]
          Length = 765

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 171/582 (29%), Positives = 266/582 (45%), Gaps = 32/582 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W              +     +P  +A +LVN+ + S D A+ +LNP    L   P
Sbjct: 4   SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D+A  RI+ A+   EKI ++GDYD DG  +  LM   L       + Y+PDR  
Sbjct: 62  DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN ++ ++ I  G QLI+TVD G     A++YA  QG+DV++ DHH +  +  PA 
Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P           L   GV F V   +                + +LDLVA+  + D
Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311
           +V L G N A V  GL   R+   PGL AL++   +    +T  ++G+ + P +NA GRI
Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++  G  LL + D +E E LA ++D  N+ R+ +   + ++A A    Q     Q   +
Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G  WH G++G++AA + +  G+P+   S  E +    GSGRS+EG D+    +    
Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVEGLDL--FAALDQH 403

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGHAMA G++ E      L     +            P  KI   L    +  
Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTQ 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L   ++   P+G GN  P          + +V+     HL++         L  +AF  
Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV---GQPPLDVVAFG- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      +  + + + G L +N WRG   CQL + D +
Sbjct: 520 ---KASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVA 558


>gi|256830507|ref|YP_003159235.1| single-stranded-DNA-specific exonuclease RecJ [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579683|gb|ACU90819.1| single-stranded-DNA-specific exonuclease RecJ [Desulfomicrobium
           baculatum DSM 4028]
          Length = 574

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 172/587 (29%), Positives = 284/587 (48%), Gaps = 27/587 (4%)

Query: 12  SISGFRWVSLLGQEGINRALA----ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIR 66
           S +   W           ++A    I ++  +  ++  ++  R ++ +     FL+P +R
Sbjct: 2   SDTQADWKLKTPAPEAELSVAQQRGIAERLEVSPLLVHLMSLRGLACESDMDKFLSPGLR 61

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L P        +  A  I  A+  + +I ++GDYDVDG  +  L++ F++   V  + Y
Sbjct: 62  YLHPL-DKWPGIEAGAALICAAVKENRRIAVWGDYDVDGITATTLVIDFMARRGVEVSHY 120

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IPDR+  GYG +   + +   +G  L++TVDCG  + + ++ A   G+ VI+ DHH    
Sbjct: 121 IPDRLDFGYGLHVDGIRELAAQGVGLLLTVDCGIANIEEIREAKALGMHVIITDHHLPGQ 180

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A  ++NP          +L   GV FL++  + R+L          D+   LDLVA
Sbjct: 181 DLPEAEVIINPKLEG--WPTPNLAGVGVAFLLMGAVNRLLP-----GAAVDIRDFLDLVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITAENLGYMIGPS 304
           L TV DVVPL   NR  V  GL++ +    PG++AL E         +   ++G+ + P 
Sbjct: 234 LGTVADVVPLDEQNRILVKNGLLLIKEGRRPGIQALKEISGLGPDDNVGTGSIGFALAPR 293

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GRIG+ +L  R+L++ D +E   LA KLD LN  R+L E  +LE+A  +  +Q   
Sbjct: 294 INAAGRIGDPDLAVRMLLATDPEEARQLATKLDKLNAKRKLEEQRILEEAITQAESQLH- 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                 +V+  + WH GI+G++A+R+ E+F RP   ++ +E+G   GSGRS   FD+ + 
Sbjct: 353 ---LPGLVLHSEHWHSGIIGIVASRIVERFHRPCLILT-KENGIFKGSGRSTPTFDLYQA 408

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +    +   L K GGH  AAGL +E      L + F       + A    PV ++D  L 
Sbjct: 409 LLSCKQ--CLYKFGGHRQAAGLKLEPFQLANLKNLFAWAVEEQLGANPAPPVLELDAELP 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFES-QDSETLQ 542
            + +   L+  LE   PYG GNP P+F  P   +   R      HL++      D   ++
Sbjct: 467 FALITATLLKELELLQPYGQGNPRPIFLSPPLSILKHRFFSQKKHLELHLSDSSDGTNMR 526

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           A+A+R              GK++ +     ++ + G ++ +L V D 
Sbjct: 527 AVAWRQGERWQD---ASFTGKQIKIAYTPRLSKFNGLQQIELAVQDI 570


>gi|163857077|ref|YP_001631375.1| single-stranded-DNA-specific exonuclease [Bordetella petrii DSM
           12804]
 gi|163260805|emb|CAP43107.1| single-stranded-DNA-specific exonuclease [Bordetella petrii]
          Length = 695

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 182/580 (31%), Positives = 270/580 (46%), Gaps = 30/580 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
                     R L       I  ++AR+   R V+         P    L+P P  LT  
Sbjct: 136 TVRSTNPDACRTLEAA---GIHPLLARLWAARGVTHPDQTRLAWP---ALLP-PAGLTHV 188

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           D AAR +  AI   ++++I  DYD DGA + A+ +R L     N +  +P+R   GYG +
Sbjct: 189 DHAARILADAIAQGKRLLIVADYDCDGATACAVGLRALRAFGANVDFLVPNRFETGYGLS 248

Query: 139 PSLMEKFINEG---AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           P++++           LIITVD G  S D +  A   GI V+V DHH        A A+V
Sbjct: 249 PAVVDLACAHHAGKPDLIITVDNGIASVDGVAAANAAGIGVVVTDHHLPGDTLPDALAIV 308

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253
           NPN+        +L   GV+F +++ +   LR+    P +    L +L DLVAL TV DV
Sbjct: 309 NPNQPGCGFPSKNLAGVGVIFYLMLALRAELRRRGVYPPDGGPRLDALSDLVALGTVADV 368

Query: 254 VPLIGLNRAYVVKGLMVARR-QGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRI 311
           V L   NR  V +GL   R  +  PGL+AL              +LG+ +GP INA GR+
Sbjct: 369 VKLDANNRLLVTQGLQRMRAGRMQPGLRALFAVAAREPRSACGFDLGFALGPRINAAGRL 428

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + +LG   L +DD  +   +A +LD +N+ RR +E+ M EQA              + +
Sbjct: 429 ADMSLGIACLTTDDEAQALDMARQLDQINRERRGIEAEMREQA--MAAMDAAGSANGATV 486

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429
            V    WH G+VGL+A+RLKEK+ RP+ A +   D +  GSGRSI    +  ++      
Sbjct: 487 CVFDPSWHQGVVGLVASRLKEKYWRPTLAFAPAGDDELRGSGRSIPDVHLRDVLDLVSKR 546

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             G++ K GGHAMAAGLT+ R +F      F      +       P+ + DG L +   N
Sbjct: 547 HPGLIRKFGGHAMAAGLTLGRDDFSVFGPAFDAAVRELTGRDRFEPLLETDGSLESGYAN 606

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
             +  +L+    +GAG   P+F      +++ R+V   HL+++ E +  +   AI F   
Sbjct: 607 ADVATLLQQ-QVWGAGFAPPLFLDE-FTVRNQRLVGEKHLKLSLE-RGHQRFDAIWFGHD 663

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                    QS  +R+     L  N W G    QL +  A
Sbjct: 664 ---------QSLPERIQAAYRLEPNVWNGMVSAQLVIEHA 694


>gi|184155105|ref|YP_001843445.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum IFO
           3956]
 gi|183226449|dbj|BAG26965.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum IFO
           3956]
          Length = 765

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 170/582 (29%), Positives = 266/582 (45%), Gaps = 32/582 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W              +     +P  +A +LVN+ + S D A+ +LNP    L   P
Sbjct: 4   SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D+A  RI+ A+   EKI ++GDYD DG  +  LM   L       + Y+PDR  
Sbjct: 62  DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN ++ ++ I  G QLI+TVD G     A++YA  QG+DV++ DHH +  +  PA 
Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P           L   GV F V   +                + +LDLVA+  + D
Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311
           +V L G N A V  GL   R+   PGL AL++   +    +T  ++G+ + P +NA GRI
Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++  G  LL + D +E E LA ++D  N+ R+ +   + ++A A    Q     Q   +
Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G  WH G++G++AA + +  G+P+   S  E +    GSGRS++G D+    +    
Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDL--FAALDQH 403

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGHAMA G++ E      L     +            P  KI   L    +  
Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTQ 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L   ++   P+G GN  P          + +V+     HL++         L  +AF  
Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV---GQPPLDVVAFG- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      +  + + + G L +N WRG   CQL + D +
Sbjct: 520 ---KASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVA 558


>gi|114320970|ref|YP_742653.1| single-stranded-DNA-specific exonuclease RecJ [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227364|gb|ABI57163.1| exonuclease RecJ [Alkalilimnicola ehrlichii MLHE-1]
          Length = 577

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 187/567 (32%), Positives = 273/567 (48%), Gaps = 23/567 (4%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ RV   R +        L   +  L+P P  L   D A R + +A+    +I + 
Sbjct: 20  LPGVLQRVYARREIRSA---RELELGLAHLLP-PGDLAGIDPATRLLAEALRRQHRICVV 75

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
           GD+D DGA S AL +R L           +P+R   GYG +P L++     +   LIITV
Sbjct: 76  GDFDADGATSCALALRGLRAMGARRIGYLVPNRFEYGYGLSPELVDLAVREQDPDLIITV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A  +GI V+V DHH        A A+VNPN      G   L   GV+F
Sbjct: 136 DNGISSLEGVAAARARGIGVLVTDHHLPGDALPAADAIVNPNLPGQAFGSRALAGVGVMF 195

Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            VL  +   LR+++           L  LLDLVAL TV DVVPL   NR  V +GL   R
Sbjct: 196 YVLAALRSHLRREDWFADEHLPEPRLDRLLDLVALGTVADVVPLDHNNRILVAQGLGRIR 255

Query: 273 -RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             QG PG++AL+E        + A +LG+  GP +NA GR+ +  LG   L++DD +   
Sbjct: 256 TGQGCPGIRALLEVAGRDPDRLVASDLGFAAGPRLNAAGRLTDMALGVECLLTDDPRRAR 315

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD---IQQASVIVVEGDRWHPGIVGLLA 387
            LA +LD LN+ RR +E+ M ++A A +    D     Q+   + +    WH G++G+LA
Sbjct: 316 SLAARLDGLNRERREIEARMTDEALALLDHLGDPVSGGQRPLGLCLMDGAWHQGVIGILA 375

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445
           +RLKE++  P  A +   +G   GSGRS+ G  +  ++        G++ K GGHAMAAG
Sbjct: 376 SRLKERYQCPVVAFAPTGEGMLKGSGRSVPGLHLRDLLEAISRRHPGLVGKFGGHAMAAG 435

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           L +   +F R  + F+      +   +       DG L  + +N+     L  AGP+G G
Sbjct: 436 LNLRAADFPRFREAFEAALAEALRDGLPDAEVASDGELTGAELNLDAARQLREAGPWGQG 495

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKR 564
            P PVF     ++   R+V   H++      D    L+AIAF               G  
Sbjct: 496 FPEPVFDGC-FQVTGSRIVGERHVRFNLAHPDGGGPLEAIAFNGVAQGWEAL----DGAT 550

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASP 591
             +   L VN+WRG +R QL V    P
Sbjct: 551 PRLAYRLDVNHWRGRERAQLVVEHVEP 577


>gi|293366408|ref|ZP_06613086.1| recombination protein J [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319442|gb|EFE59810.1| recombination protein J [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735199|gb|EGG71491.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis VCU045]
          Length = 757

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 153/591 (25%), Positives = 275/591 (46%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     Q     + + + +  +  IV +VL ++N+      ++    +   +  D 
Sbjct: 4   SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  +      G+DVIV DHH++      A+
Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   +     Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +GL +        +KA++ +   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRYIVKQGLKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD+ +E E LA +++  N  R+ + S + ++A      Q    Q    ++
Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIK--QGHLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ +E      GS RSIE   +         +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L      +   +       P  K+D  L    +NI 
Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLRKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +    P+G    +P+F   +  ++S + +     HL++T        L A+ +   
Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       G+ +H+ G L +N W G++  Q  + D +  +      +
Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568


>gi|46445883|ref|YP_007248.1| putative ssDNA-specific exonuclease [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399524|emb|CAF22973.1| putative ssDNA-specific exonuclease [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 594

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 148/580 (25%), Positives = 265/580 (45%), Gaps = 19/580 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILT 76
           WV     E +    +I ++  +  ++A++LV+R  +      D+L   +  L  DP ++ 
Sbjct: 13  WVYPPMDEALK--ESIVKEFKLHPVIAQILVSRGFTSFQQIHDYLYAKLPELH-DPFLMA 69

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           +  +A  R+ +AI + E I+I+GD DVDG     L+  FL     N   Y+ +R      
Sbjct: 70  EMPQAVERVCRAIRDHENILIYGDNDVDGMTGTTLLTEFLQDLGANVFFYVSNRGALRQS 129

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                +E  +    +L+ITVDCG T+   +     Q +DVI+ DHH+   +     A +N
Sbjct: 130 LIVEALEYALINNCKLLITVDCGITAAVEIAKVAAQNVDVIITDHHEPTDKIPHCVATLN 189

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVP 255
           P  +++      L   GV F +   I   L  + K+P +  DL   LDLVAL T+ D+  
Sbjct: 190 PKLVNNPYPNRDLTGVGVAFKLAHGITNQLTSEGKIPPSKIDLKKYLDLVALGTISDMGS 249

Query: 256 LIG-LNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           L+   NR  V  GL   R+    GL  L    ++  + +    +   I P +N+ GRI +
Sbjct: 250 LLDTENRILVRYGLRQLRKGKRMGLAKLFSICDVDLNDLNTFTIASKIAPRLNSLGRIAD 309

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
              G ++L+  ++   E +A++LD+ N  R+ +E  M    ++ +      +   ++++V
Sbjct: 310 PRKGVQMLLVKNADLAEKMALELDLNNIERQKIERTMSSDVDSTIQQIPAILSNKAIVMV 369

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             D+WHPG++ +L+ R+ +++ RP+  I+  + G G GS RSI  F +   +       I
Sbjct: 370 -SDKWHPGVIAILSTRISKQYNRPTVMIA-IDKGIGKGSIRSIREFPLLPTLKEC--SDI 425

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH  AAGLT++  +  +  + F   A+  +          +D  +  S +    I
Sbjct: 426 LINFGGHDFAAGLTIKEEHVEQFKNHFIASANKKLADTDVMSKLYLDAEIKFSELTFDFI 485

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +      PYG  NP P+      +    ++V   HL++  E  D   L+ +A    G   
Sbjct: 486 ESARLLEPYGNENPQPILYCDAWQTWPPKIVGKTHLKLYLEQGD-RVLEGVA---LGKAT 541

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
               ++ +  ++ +     +N        QL + D   +E
Sbjct: 542 YSQQLRKKNLKLRIAFTPQIN----KSSIQLLIRDFKVLE 577


>gi|317495225|ref|ZP_07953595.1| single-stranded-DNA-specific exonuclease RecJ [Gemella moribillum
           M424]
 gi|316914647|gb|EFV36123.1| single-stranded-DNA-specific exonuclease RecJ [Gemella moribillum
           M424]
          Length = 751

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 159/581 (27%), Positives = 274/581 (47%), Gaps = 29/581 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           ++W+  +  E     L   +++ I   +A++L +R +  I   K F +        DP +
Sbjct: 5   YKWLYPINNENFLMQL---EEYNISKNIAKILDSRGIHEISEVKKFFSDDYEEGY-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  +A  RI  AI N EKI+I+GDYD DG  S  L++  L     N + YIP+R  +G
Sbjct: 61  MHDMKRAVDRINDAIENEEKILIYGDYDADGITSTVLLVETLISLGANVSSYIPNRFDEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN     K I  G  LIITVD G    + +  A   G DVI+ DHH+++     AYA+
Sbjct: 121 YGPNKEAFTKIIESGITLIITVDNGIAGVEEVNLANELGCDVIITDHHKIQDVIPSAYAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   D     G L   GV F +   +  I               LLDLVA+ T+ D+V
Sbjct: 181 IHPEHPDGNYPFGKLAGVGVAFKLAHALLEIFPD-----------FLLDLVAIGTIADMV 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L   NR +V +GL +       G+K L++   I+S +  + +G+ I P +N+ GR+  +
Sbjct: 230 SLTDENRIFVKQGLELINEDPRIGIKMLLDLSGITSKVDEQTIGFYIAPKLNSVGRMSSA 289

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            LG   L+++D+ + ++LA K++  N  R+ +   +++   +K+  +  D +   VI++ 
Sbjct: 290 KLGLSFLMAEDAYDAKILAEKIEEYNIQRKSVTEDIVKDIISKI--ENSDKKNKDVIMIY 347

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           GD +H G++G++A+ + E++ RP   ++ ++ G   GS RSI  F+I   V+        
Sbjct: 348 GD-YHEGVLGIVASNIVERYQRPVLIMTNKD-GILKGSARSIFDFNIYTAVNK--IGDKF 403

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +  GGH +AAG + E  NF  + +   K                ID V +   ++   ++
Sbjct: 404 IAYGGHTLAAGFSFEENNFETIEEELNKDFAEYKNTNELKSTKTIDIVTSLEEMSYQFLN 463

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            L++  PYG     P     N K+           ++++T   +   +L+ I+F      
Sbjct: 464 SLDALKPYGMDFEKPTILLENAKILDKAYFGAEKQYMRLTIADEVG-SLECISF----KE 518

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              F    +   + +   L  N + G  + Q  ++D    E
Sbjct: 519 NSAFNSIEKNDIIDLLCTLDKNNFNGRTKLQAHIIDMEIKE 559


>gi|329667134|gb|AEB93082.1| hypothetical protein LJP_0754 [Lactobacillus johnsonii DPC 6026]
          Length = 756

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/577 (28%), Positives = 281/577 (48%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W              + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQRQANNLDQ---ELIEDYGLTDIQAKLFALRGINTAEKIDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K   RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN +  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  A++ V+
Sbjct: 119 PNMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI++  ++   ITA ++G+ I P +NA GR+  ++
Sbjct: 228 TGEGHIIVKRGLEILNQTERPGLRALIKQAGLTMGKITATDVGFNIAPRLNAVGRLANAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A K++ LN  R+ + + + E   A+V       Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEKIATKIEELNNERKELTTKVYEDCLAQVENNGW--QHRNTLVIYN 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E G+  GSGRS EGF++   +   ++E +L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDEAGELKGSGRSSEGFNLFNALEP-MKEDLLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++      L   F+          +       D  LN   V    I  
Sbjct: 405 KFGGHDFACGLSLKADKLEELRVRFEDSFKPSTDLEVKN----FDFELNLKEVTPDTIAE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP P+F+     ++S+  +     H++ T E    + L  I F      L
Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNAGK-LTIIGFN--KGFL 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + L+    +   +   L +N W+     Q  +    
Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551


>gi|262195619|ref|YP_003266828.1| single-stranded-DNA-specific exonuclease RecJ [Haliangium ochraceum
           DSM 14365]
 gi|262078966|gb|ACY14935.1| single-stranded-DNA-specific exonuclease RecJ [Haliangium ochraceum
           DSM 14365]
          Length = 577

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 180/587 (30%), Positives = 273/587 (46%), Gaps = 30/587 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W             ++     + +I AR L  R +     A+ +L P +  L P P+ LT
Sbjct: 5   WTIRT--VDATTVSSLAAGLGVSEITARCLAGRGIADASSARSYLAPRLNQLRP-PVGLT 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
               A  R+ +A+   E+I IFGDYDVDG  + ALM  FL     +    +  R   GYG
Sbjct: 62  GLSTAVERLARAVSQGERIGIFGDYDVDGVTTAALMASFLEQLGASCVPRVARR-DAGYG 120

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAYAL 194
              +  +   + G ++IIT DCG++  DA++ A  +G+DVIV+DHH V   +E+ PA AL
Sbjct: 121 FGSAEADAMASAGCRVIITGDCGTSDIDAIERAAARGVDVIVVDHHTVPSATEQHPALAL 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVC 251
           VNP R D       + + G+ F ++  +   L             DL  LLDLVAL TV 
Sbjct: 181 VNPLRADSTFPFRAMASVGLAFYLMAALRTELSGRGYFRSGREMPDLRELLDLVALGTVA 240

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER--VNISSPITAENLGYMIGPSINAGG 309
           D+VPL G NR     GL    +   PG+ AL+    V     I    +G+ +GP +NA G
Sbjct: 241 DLVPLQGENRILAATGLQYLAQGRRPGVAALMALAKVGGDRGIDERAIGWRLGPRLNAPG 300

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G++     LL++ D+ E E  A +++  N+ RR  ++ + EQ    +           
Sbjct: 301 RMGDAAPALSLLLARDAAEAEHWAAQVEDANERRRAAQAEVWEQVLGML----PSADPGP 356

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFA 428
            +VV GD W  GI G++A++L E F RPSF I+ +   G   GSGR+ +GF + ++++  
Sbjct: 357 AVVVAGDGWPSGITGIVASKLNEMFERPSFVIAVDPVSGLARGSGRAPKGFHLCEILARC 416

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT---TPVFKIDGVLNA 485
             +  LV+ GGHA AAGLT E      L +                       ID  ++ 
Sbjct: 417 --DSHLVRFGGHAGAAGLTAEAGRVEALREALSAAVAEASADGDEGGAGRGSLIDAEVDL 474

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQA 543
             V+ +L   L    P+G GN  P+      ++++ R V     HL++ FE +    L  
Sbjct: 475 GQVDESLCRELGQLSPFGQGNEKPLLGCRGMRVRTTRRVGGDGSHLKLEFEDRQGRALSG 534

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAF       G       G  +  T    +N WRG  R +L +   +
Sbjct: 535 IAFGWGERDPG------AGATIDATFVPSINVWRGESRVELEIQHLA 575


>gi|187734566|ref|YP_001876678.1| single-stranded-DNA-specific exonuclease RecJ [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424618|gb|ACD03897.1| single-stranded-DNA-specific exonuclease RecJ [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 579

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 172/555 (30%), Positives = 269/555 (48%), Gaps = 30/555 (5%)

Query: 49  NRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107
            R  +     + FL+P +  L  DP ++ +   A  RI +A+   E + I+GDYDVDG  
Sbjct: 37  QRGFTGGMETELFLDPRLSHL-SDPFLMGEMRAAVDRIFRAVDEGETVCIYGDYDVDGVT 95

Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF---INEGAQLIITVDCGSTSYD 164
           SVAL+   L    ++   +IP R  +GYG + + +++      +   L+ITVDCG++S  
Sbjct: 96  SVALLRAILMAYDLDPQYFIPVRSREGYGLSEAGIKRCLCECADPPSLLITVDCGTSSVK 155

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
            +    + GIDVI++DHH+      P  A V   ++++ S   +LC+AGVVF +   + +
Sbjct: 156 EVDMLNSLGIDVIILDHHEAGPLGRPDAAAVVNAKIEENSPYTYLCSAGVVFKLAHALLK 215

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
             +        FDL   LDLVA+ATV D+VPL+  NR  V  GL       + GLK L E
Sbjct: 216 ERKLK-----TFDLKLYLDLVAVATVADIVPLVAENRILVRHGLGRLAHSRHTGLKTLTE 270

Query: 285 R--------VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
                    VN +  + A ++G+ IGP INA GR+        LL++ D++    LA  L
Sbjct: 271 IAGIRPSDSVNHAGFLNAAHVGFRIGPRINAAGRMDSPMDALELLLTMDARRAVQLAQML 330

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
           D  N+ R+  E A+   A   +     D ++ +VIV+    WHPG+VG++A++L  ++ +
Sbjct: 331 DSHNRKRQEEEEAIRTDAVEMLH-NSFDPERDNVIVLGSRAWHPGVVGIVASQLMRRYHK 389

Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456
           P+F I+F+E G G GSGRSI G  + + +        LV GGGH MAAGL +E       
Sbjct: 390 PTFVIAFDESGVGKGSGRSIPGVSLVQAIHHC--ADTLVSGGGHDMAAGLVIEESRMDDF 447

Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
              F ++          +PV  ID  ++  A+ + L+D  E   P+G  NP P+F   + 
Sbjct: 448 RRAFNRYVSETTTEEQRSPVLNIDMEVSFQALTLDLLDSYEKLEPFGNSNPQPLFMSSDV 507

Query: 517 KLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
                 + V   HL++ F  Q      AI F      L             +   +  N 
Sbjct: 508 FPTEPPKRVGTNHLKL-FMRQGIVERDAIFFNGAERELP-------NPPWDIAFTIDRNV 559

Query: 576 WRGSKRCQLRVLDAS 590
           +RG     + + +  
Sbjct: 560 YRGRASLSISIQEIR 574


>gi|329737373|gb|EGG73627.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis VCU028]
          Length = 757

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 152/591 (25%), Positives = 274/591 (46%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     Q     + + + +  +  IV +VL ++N+      ++    +   +  D 
Sbjct: 4   SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  +      G+DVIV DHH++      A+
Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   +     Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +G+ +        +KA++ +   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRYIVKQGVKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD+ +E E LA +++  N  R+ + S +  +A      Q    Q    ++
Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITNEALLLAEEQIK--QGHLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ +E      GS RSIE   +         +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L      +   +       P  K+D  L    +NI 
Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +    P+G    +P+F   +  ++S + +     HL++T        L A+ +   
Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       G+ +H+ G L +N W G++  Q  + D +  +      +
Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568


>gi|260663647|ref|ZP_05864536.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum
           28-3-CHN]
 gi|260551873|gb|EEX24988.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum
           28-3-CHN]
          Length = 765

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 170/582 (29%), Positives = 266/582 (45%), Gaps = 32/582 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W              +     +P  +A +LVN+ + S D A+ +LNP    L   P
Sbjct: 4   SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D+A  RI+ A+   EKI ++GDYD DG  +  LM   L       + Y+PDR  
Sbjct: 62  DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN ++ ++ I  G QLI+TVD G     A++YA  QG+DV++ DHH +  +  PA 
Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P           L   GV F V   +                + +LDLVA+  + D
Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311
           +V L G N A V  GL   R+   PGL AL++   +    +T  ++G+ + P +NA GRI
Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++  G  LL + D +E E LA ++D  N+ R+ +   + ++A A    Q     Q   +
Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G  WH G++G++AA + +  G+P+   S  E +    GSGRS++G D+    +    
Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDL--FAALDQH 403

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGHAMA G++ E      L     +            P  KI   L    +  
Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTVQGFNQQQKPPLKITLTLAPDRLTQ 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L   ++   P+G GN  P          + +V+     HL++         L  +AF  
Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV---GQPPLDVVAFG- 519

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      +  + + + G L +N WRG   CQL + D +
Sbjct: 520 ---KASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVA 558


>gi|42519347|ref|NP_965277.1| hypothetical protein LJ1475 [Lactobacillus johnsonii NCC 533]
 gi|41583635|gb|AAS09243.1| hypothetical protein LJ_1475 [Lactobacillus johnsonii NCC 533]
          Length = 756

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/577 (27%), Positives = 282/577 (48%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W              + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQRQANNLD---EELIKDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K   RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN +  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  A++ V+
Sbjct: 119 PNMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI++  ++   ITA ++G+ I P +NA GR+ +++
Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGEITATDVGFNIAPRLNAVGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A +++ LN  R+ + S + +   A+V       Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEKIAARIEELNNERKELTSKVYDDCLAQVEKNGW--QHRNTLVIYN 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E G+  GSGRS EGF++   +   +++ +L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDETGELKGSGRSSEGFNLFNALEP-MKDDLLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++        +  +    +         V   D  LN   V    I  
Sbjct: 405 KFGGHDFACGLSLKADKL----EELRVRFEDSFKPSTDLEVKDFDFELNLKEVTPDTIAE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP P+F+     ++S+  +     H++ T E    + L  + F      L
Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNAGK-LTIVGFN--KGFL 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + L+    +   +   L +N W+     Q  +    
Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551


>gi|242242908|ref|ZP_04797353.1| recombination protein RecJ [Staphylococcus epidermidis W23144]
 gi|242233623|gb|EES35935.1| recombination protein RecJ [Staphylococcus epidermidis W23144]
          Length = 757

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 154/591 (26%), Positives = 278/591 (47%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     Q     + + + +  +  IV +VL ++N+      ++    +   +  D 
Sbjct: 4   SKYNWDI--TQPDTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFKDT--NISHDY 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRILGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  +      G+DVIV DHH++      A+
Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   + +   Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIKHPPQ-----------HFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +GL +        +KA++ +   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRYIVKQGLKILNSHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD+ +E E LA +++  NQ R+ + S + ++A      Q    Q    ++
Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNQERKDIVSKITDEALILAEEQIK--QGHLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ +       GS RSIE   +         +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDKNQNHAKGSARSIEQVSM--FDILNDHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N  RL      +   +       P  K+D  L  + +NI 
Sbjct: 405 QLIDKFGGHHMAAGMTMPIDNIERLHKELNVWMKELTVTTSLEPSIKVDAQLEETEINIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +    P+G    +P+F   +  ++S + +     HL++T        L A+ +   
Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       G+ +H+ G L +N W G++  Q  + D +  +      +
Sbjct: 522 HL----ASELEAGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568


>gi|190574177|ref|YP_001972022.1| putative single-stranded-DNA-specific exonuclease [Stenotrophomonas
           maltophilia K279a]
 gi|190012099|emb|CAQ45721.1| putative single-stranded-DNA-specific exonuclease [Stenotrophomonas
           maltophilia K279a]
          Length = 587

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 174/564 (30%), Positives = 279/564 (49%), Gaps = 24/564 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++AR+  +R            P +  L   P +LT  D A   +++AI N ++I++ GD
Sbjct: 36  PLLARLYASRGAGTPELAL---PKLGSLHA-PELLTGIDDAVGLLIEAIANDKRILVVGD 91

Query: 101 YDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L         + +P+R+V GYG +PSL+E+       L++TVD G
Sbjct: 92  FDCDGATACAVGVRGLRMLGAQHVFHAVPNRMVHGYGLSPSLVEELAALQPDLLVTVDHG 151

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH    +  PA  +V+PN   D      L   GV+F VL
Sbjct: 152 IACHAGVIAAKARGWQVLVTDHHLPGPQLPPADVIVDPNLDGDAFPSKSLAGVGVIFYVL 211

Query: 220 VLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + R +R+          DL +LLDLVA+ TV D+V L   NRA V  GL   R  QG 
Sbjct: 212 MALRRHMREAGVFADGKGPDLTTLLDLVAVGTVADLVALDPNNRALVSAGLRRLRAGQGC 271

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALIE      + +TA ++G+ +GP +NA GR+ +  LG  LL+++D ++   +A  
Sbjct: 272 VGLRALIEASGRDAARLTATDIGFALGPRLNAAGRLEDMALGIALLLTEDPRQAREIAQT 331

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++ +M + AE  +     D+  Q+     +    WHPG+VGL+A+++K++
Sbjct: 332 LEQINSERRAVQQSMTDDAEQALTRVVLDMAGQRPVAACLFDADWHPGVVGLVASKMKDR 391

Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A +  E G     GS RSI G  I   ++   A   G++ + GGHAMAAGL++ 
Sbjct: 392 LHRPVIAFAPAEPGADTLRGSARSIPGLHIRDALALVDARHPGLIERFGGHAMAAGLSMR 451

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             +       F      ++           DG L A  ++    D L  AGP+G G P P
Sbjct: 452 LDHVDDFKAAFVAVVLEMLDPAALQQQVLSDGELAADELDHRHADALRLAGPWGQGFPEP 511

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F   + ++ + RV+   HL++         T+ AI F  +          + G+ +H+ 
Sbjct: 512 LFDG-HFEVANWRVLKERHLKLELRLPGVPGTINAIHFGGWHG-------NAPGRHVHLA 563

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  + +RG    QL +    P 
Sbjct: 564 YRLACDDYRGGSAIQLIIEHCLPA 587


>gi|219848785|ref|YP_002463218.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus
           aggregans DSM 9485]
 gi|219543044|gb|ACL24782.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus
           aggregans DSM 9485]
          Length = 570

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/582 (28%), Positives = 262/582 (45%), Gaps = 22/582 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S    RW           A  I Q   +  ++A +L  R +   + A  FL       + 
Sbjct: 2   SARRQRWEVRPPAP----ATFIAQ-LNLHPVLATLLYQRGLHEPEAAHAFLAADYTSGLH 56

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DPL +    +AA RI  AI   E++ ++GD+DVDG  +VAL+ + +         YIP R
Sbjct: 57  DPLRMRGMAEAAARIATAIDRGERMAVYGDFDVDGVTAVALLTQAIRAMGGKIRPYIPHR 116

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             +GYG N   + +   +G +L+ITVDCG ++   +  A   G+DVIV DHH    E   
Sbjct: 117 AREGYGLNNVAIGQLAADGVRLLITVDCGISNVAEVVEAKRLGMDVIVTDHHHPPDELPS 176

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP + D       L   G+ F ++  + R      K P +     LLDLVAL T+
Sbjct: 177 ADAVINPKQPDCAYPFKGLVGVGIAFKLVQALARY----GKRPAHLRGRDLLDLVALGTI 232

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309
            D+ PL+  NR  V  GL+       PG+++LI    ++   + +  + + + P +NA G
Sbjct: 233 ADMGPLVDENRVLVRAGLLALNETNRPGVRSLITVAGLTPGAVDSGGVTFSLAPRLNAAG 292

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++     LL++DD    + +A  L   N+ R+ M   +   AE  +        +  
Sbjct: 293 RLDDARRAYELLLADDQATADAIAADLHATNRERQSMTRQLQTIAEELINASGRA--EHP 350

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           +IV+    ++ G++GL+AARL E++ RP   I  +      GS RSI GF+I +++    
Sbjct: 351 LIVLTNPNFNAGLLGLVAARLVERYHRPVVVIE-QGSETSRGSARSIPGFNIIELLDQC- 408

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              + V+ GGH  AAG T+   N   L           +   + TP   ID  L    ++
Sbjct: 409 -ADLFVRYGGHTAAAGFTIHTANIPVLEQRLLALGKQYLKEELLTPRLLIDAKLPLDELS 467

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRV 548
             +   ++   P+G  NP P+F  PN  +          HL+M   +  +   +AI F  
Sbjct: 468 WDVYYAIQQLEPFGHCNPTPMFMAPNVTVIDPQTTTTGDHLRMRVRA-GTNVYEAIGFNF 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       R   + +   L V+ W G +R +L V D  
Sbjct: 527 GHF----AAALQRHPTVDLAYQLAVDEWNGQRRMRLLVRDFR 564


>gi|329724685|gb|EGG61191.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis VCU144]
          Length = 757

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/591 (25%), Positives = 274/591 (46%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     Q     + + + +  +  IV +VL ++N+      ++    +   +  D 
Sbjct: 4   SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  +      G+DVIV DHH++      A+
Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   +     Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +G+ +        +KA++ +   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRYIVKQGVKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD+ +E E LA +++  N  R+ + S +  +A      Q    Q    ++
Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITNEALLLAEEQIK--QGHLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ +E      GS RSIE   +         +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L      +   +       P  K+D  +    +NI 
Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQIEEKEINIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +    P+G    +P+F   +  ++S + +     HL++T        L A+ +   
Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       G+ +H+ G L +N W G++  Q  + D +  +      +
Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568


>gi|257453462|ref|ZP_05618757.1| single-stranded-DNA-specific exonuclease RecJ [Enhydrobacter
           aerosaccus SK60]
 gi|257449214|gb|EEV24162.1| single-stranded-DNA-specific exonuclease RecJ [Enhydrobacter
           aerosaccus SK60]
          Length = 592

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 181/587 (30%), Positives = 272/587 (46%), Gaps = 32/587 (5%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
              E       + Q       +AR+L  R V        L+ S   ++P    LT   KA
Sbjct: 12  KIDEIPRDLQPLAQT---SMTLARILAGRGVRDA---ANLDTSFNKMLPA-NSLTGITKA 64

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
              + +AI   +KI+I GD+D DGA S ALM+R L          +PDR   GYG  P +
Sbjct: 65  VALLDKAIDTQQKILIVGDFDCDGATSTALMVRVLREMGAQVEFLVPDRFKYGYGLTPEI 124

Query: 142 MEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
           +   I      +I+TVD G +S+  ++ A  +G+ VI+ DHH        A A+VNPN+L
Sbjct: 125 VALGIETYDPDVIVTVDNGISSHAGVELAKAKGLTVIITDHHLTTQATPNADAVVNPNQL 184

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
                   L   GV F VL  + ++ RQ N       +   +DLVAL TV DV  L   N
Sbjct: 185 GCDFASKSLVGVGVAFYVLGNLAKVRRQAN--KSTTQVSRYIDLVALGTVADVGVLDQNN 242

Query: 261 RAYVVKGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGS 318
           R  V +G+   ++          L +    ++ ITA++ G+++GP INA GR+    +G 
Sbjct: 243 RILVHQGIQAIKQGRCCVGILALLEQASRQATDITAQDFGFILGPRINAAGRMDSMRIGI 302

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV----- 373
             L++DD  E + LA +LD LNQ RR +E  M +QA++ + T  +  +Q +V  V     
Sbjct: 303 DCLLTDDWGEAQRLAHQLDKLNQERRQVEQGMRQQADSVLTTLENPSEQNAVNQVTQRKR 362

Query: 374 ----EGDRWHPGIVGLLAARLKEKFGRPSFAISF------EEDGKGIGSGRSIEGFDIGK 423
                 D WH G++G++A RLKE +  P+   +       E+D    GS RSIEG  I  
Sbjct: 363 SIILYQDEWHQGVIGIVAGRLKESYHVPAIVFAPADTSLIEDDNPIKGSARSIEGIHIRD 422

Query: 424 MVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            +         ++   GGHAMAAGLT++R NF   C  F +     V   +       DG
Sbjct: 423 AIESVAQTYPELISHFGGHAMAAGLTIKRKNFEPFCKAFDEVIAA-VADEVFAETLYSDG 481

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-T 540
            L A    +  +D L++   +G G   P+F      +Q  RV+   HL++     D   T
Sbjct: 482 ELTAGEFTVDFVDSLQTLAIWGHGFVPPIFDGMFV-VQDYRVLKERHLKLWLSYPDVPFT 540

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           ++AI F      +    +     ++H+   L  N + G  + QLRV 
Sbjct: 541 IEAIWFNADFDAIALSAINRSLSKVHLLYELEKNLFNGQTKLQLRVK 587


>gi|94501160|ref|ZP_01307683.1| single-stranded-DNA-specific exonuclease RecJ [Oceanobacter sp.
           RED65]
 gi|94426736|gb|EAT11721.1| single-stranded-DNA-specific exonuclease RecJ [Oceanobacter sp.
           RED65]
          Length = 581

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 175/582 (30%), Positives = 287/582 (49%), Gaps = 31/582 (5%)

Query: 33  ITQKHAIP--DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
           IT++ + P   I+ RVL +R +        L+ S+  L      L   D+A   +  AI 
Sbjct: 5   ITRRFSNPELPIIERVLDSRGLKTGD----LSFSLNQLAGY-QALKGIDQAVAMLEFAIR 59

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME-KFINE 148
           + ++I+I GD+D DGA S AL +  L     +  +  +P+R   GYG + ++ +  +   
Sbjct: 60  SQQRIVIIGDFDADGATSTALAVDALQQLGAHWVHYLVPNRFEFGYGLSSAIAQLAYEQY 119

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
              L++TVD G +S++ ++ A   G+ V+V DHH        A A+VNPN+ D L     
Sbjct: 120 QPDLLVTVDNGISSFEGVETAHELGMKVLVTDHHLAADSLPNADAIVNPNQPDCLFPSKA 179

Query: 209 LCAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
            C   VVF V+  +    +   ++   N ++   LDLVALATV DVVPL   N+  V +G
Sbjct: 180 ACGCAVVFYVMCALRAHRMNLGDETAKNLNMAQYLDLVALATVADVVPLDRNNQILVEQG 239

Query: 268 LMVARR-QGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDD 325
           L   R  Q  PG++AL++     +P+    + G+ +GP +NA GR+ + ++G   L+S +
Sbjct: 240 LRRIRAGQARPGVQALLQVAKRQAPLLTSKDFGFALGPRLNAAGRMDDMSIGIECLLSKE 299

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ-CDDIQQASVIVVEGDRWHPGIVG 384
                 +A  LD LNQ+R+ +E  M ++A   + T    + Q+ +   +   +WH G+VG
Sbjct: 300 FTRAVHIAETLDELNQDRKSVEGQMQKEALKILETTSLSNEQEQATYCLYHPQWHQGVVG 359

Query: 385 LLAARLKEKFGRPSFAISFEEDG-----------KGIGSGRSIEGFDIGKMVSFA--VEE 431
           LLA+R+KEK  RP  A +   D            +  GSGRSI GF +   +        
Sbjct: 360 LLASRIKEKLFRPVIAFAPASDDVTNEALASGEFEIKGSGRSIPGFHMRDALDLVAKRLP 419

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L K GGHAMAAGL++++ +       F++ A +I+ A +       DG  N    N+ 
Sbjct: 420 HVLQKFGGHAMAAGLSIQQKHLKEFETCFEQVARDIMTADMLVNEIITDGEPNYEDYNVH 479

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFRV 548
           +   L+   P+G   P P+F      + + R++     HL++T  S++    L AI F +
Sbjct: 480 IARQLKFVAPWGQNFPEPIFDGE-FDVINYRLIGSEKNHLKLTLASKNHHRYLDAILFSI 538

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               L    + +   R+H+   L VN +RG +  QL +    
Sbjct: 539 ERHGLSAQDVSNL-SRVHIVFDLDVNEFRGQENVQLMIRHLR 579


>gi|218133212|ref|ZP_03462016.1| hypothetical protein BACPEC_01074 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992085|gb|EEC58089.1| hypothetical protein BACPEC_01074 [Bacteroides pectinophilus ATCC
           43243]
          Length = 577

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 173/590 (29%), Positives = 283/590 (47%), Gaps = 34/590 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILT 76
           W     +       AI  +  I  ++AR++ NR+V+ D   +++L   +   M DP+++ 
Sbjct: 4   WKVYAKKADF---KAIGARFGINQVIARIIRNRDVTEDSQYEEYLYGGLES-MHDPVLMK 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +A   I  AI + ++I I GDYD+DG  S+ ++ + L     +A+  +PDRI DGYG
Sbjct: 60  GISEAVAVIKNAIADGKRIRIIGDYDIDGVCSICILHKGLIMAGADADYVVPDRITDGYG 119

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE--------- 187
            N +L+   I +G  +IIT D G  +YDA+ YA   GI +IV DHH V            
Sbjct: 120 INENLIRNAIADGIDMIITCDNGIAAYDAIAYAKENGITIIVTDHHDVPFRENADGTREY 179

Query: 188 -EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA  +V+P + D       LC A V + ++  +     +D++      L+ LL+L A
Sbjct: 180 IIPPADVVVDPKQSDCGYPFKELCGALVAWKMIQHLLGQKPKDSEF-----LMYLLELGA 234

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNI-SSPITAENLGYMIGPS 304
           +ATV D+V L G NR  V +GL        N GLK L++   +  +   A ++G+++GP 
Sbjct: 235 IATVGDIVSLQGENRTIVKQGLRHIHAGTRNVGLKTLMDVCGVAEADFNAYHIGFVVGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GR+  +    RLL +DD ++ + LA +L +LN  R+ M    +E A   V  +  +
Sbjct: 295 LNASGRLDSAVKAIRLLETDDEKQAQALAAELKLLNDERKDMTERGVENACNTVEREYGN 354

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE--EDGKGIGSGRSIEGFDIG 422
                +IVV  D  H  + G++A R++EK+ RP    +    E G   GSGRSIE +D+ 
Sbjct: 355 -NIPQIIVVHLDNCHESVAGIIAGRVREKYYRPCIIFTDSIGEHGIYKGSGRSIEPYDM- 412

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
                     +L K GGH MAAG+++    F    +         +     TPV  ID  
Sbjct: 413 -FAGVNRFRDMLEKFGGHHMAAGMSIRSERFEEFRECLVNSMD--MSDEELTPVTWIDVP 469

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSET 540
           +    V   + + L+   P+G  NP PVFA  N  +    ++      L+M  ++ +   
Sbjct: 470 MPLDYVTEEVTEQLQLLEPFGKDNPKPVFADKNLTVVRKNIIGKNRNVLKMILQTVNGRR 529

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           L+A+ F V      E      G  + +  +  +N + G+   Q+ + +  
Sbjct: 530 LEAVKFHVTQE---EADNMKTGDIISIVYYPDINTFNGNSTLQMIISEIK 576


>gi|241890134|ref|ZP_04777432.1| single-stranded-DNA-specific exonuclease RecJ [Gemella haemolysans
           ATCC 10379]
 gi|241863756|gb|EER68140.1| single-stranded-DNA-specific exonuclease RecJ [Gemella haemolysans
           ATCC 10379]
          Length = 753

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 157/581 (27%), Positives = 275/581 (47%), Gaps = 29/581 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + W+     E   + L   + ++I   +A++L  RN++     K + +        DP +
Sbjct: 5   YNWIYPNYDENFIKEL---ESYSISKNIAKILNARNITDMTSVKKYFSDEYEEGY-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI +AI N EKI+++GDYD DG  S  L++  L     N + YIP+R  +G
Sbjct: 61  MHDMQKAVDRINEAIENEEKILVYGDYDADGITSTVLLVETLISMGANVSSYIPNRFEEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN     K I+ G  LIITVD G    + +  A   G DVIV DHH+++     AYA+
Sbjct: 121 YGPNKEAFTKIIDSGITLIITVDNGIAGVEEVDLANELGCDVIVTDHHKIQDTIPNAYAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +       L   GV F +   +  I               LLDLVA+ T+ D+V
Sbjct: 181 IHPEHPEGNYPFKKLAGVGVAFKLAHALLEIFPD-----------FLLDLVAIGTIADMV 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            +   NR +V +GL +       GLK L+E   I + I  + +G+ I P +N+ GR+  +
Sbjct: 230 SITDENRIFVKQGLELINEDPRIGLKMLLELSGIDTKIDEQTVGFYIAPKLNSIGRMDSA 289

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            LG   L++++      LA +++  N  R+ +   +++   +K+  +  + +Q +VI+V 
Sbjct: 290 KLGLTFLMAEEPVTARALAEQIEQYNIQRKQVTEDIVKDVISKI--ENSEKKQKNVIMVS 347

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ +H G++G++A+ + EK+ +P F ++ +E G   GS RSI  F+I   ++      + 
Sbjct: 348 GE-YHEGVLGIVASNIVEKYQKPVFIMNEKE-GVLKGSARSIFDFNIYVAMNK--ISDLF 403

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +  GGH +AAG + E+ NF ++ +F                   ID V +   ++   ++
Sbjct: 404 LAFGGHTLAAGFSFEKSNFEKIEEFLDNEFEEFKQNNNLKANKNIDIVTSLEDISYQFLN 463

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            L++  PYG     P     N  + +         +L++T   +    L  I F+   T 
Sbjct: 464 SLDALKPYGMDFEKPTVLIENAMVLNKAYFGSEKQYLRLTIADEVGN-LDCITFKDSVT- 521

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              F    +   + +  ++  N + G  + Q  ++D    E
Sbjct: 522 ---FDKVEKNDIIDLVCNIDKNNFNGRTKLQAHIIDIHIKE 559


>gi|268319277|ref|YP_003292933.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           johnsonii FI9785]
 gi|262397652|emb|CAX66666.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus
           johnsonii FI9785]
          Length = 756

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 162/577 (28%), Positives = 278/577 (48%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W              + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQRQANNLDQ---ELIEDYGLTDIQAKLFALRGINTAEKIDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K   RI QAI N EKI I+GDYD DG  + ++MM  L     +   +IPDR  DGYG
Sbjct: 59  DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVYFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+ +  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  A++ V+
Sbjct: 119 PSMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI++   I   ITA ++G+ I P +NA GR+  ++
Sbjct: 228 TGEGHIVVKRGLDILNQTERPGLRALIKQAGLIMGQITATDVGFNIAPRLNAVGRLSNAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A K++ LN  R+ + S + E   A+V       Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEKIATKIEELNNERKELTSKVYEDCLAQVEKNGW--QHRNTLVIYN 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E G+  GSGRS EGF++   +   ++E +L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDEAGELKGSGRSSEGFNLFNALEP-MKEDLLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+ +        +  +    +         V   D  LN   +    I  
Sbjct: 405 KFGGHDFACGLSFKADKL----EELRVRFEDSFKPSTDLEVKDFDFELNLKEITPDTIAE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP P+F+     ++S+  +     H++ T E    + L  + F      L
Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNTGK-LTIVGFN--KGFL 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + L+    +   +   L +N W+     Q  +    
Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551


>gi|317970121|ref|ZP_07971511.1| single-stranded DNA-specific exonuclease [Synechococcus sp. CB0205]
          Length = 646

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 169/583 (28%), Positives = 271/583 (46%), Gaps = 25/583 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP-L 73
             W        +       Q   + + +  +L  R   S    +  LNP+     PDP  
Sbjct: 17  QNWQL-PAAVALEELPGDVQALGLSEPILALLSRRGFGSAAAIEALLNPADA---PDPKH 72

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
              D   A +R+ QA   +E++ I GDYD DG  S AL++  L          IP R  D
Sbjct: 73  HFPDLGLAVKRLKQACKTNERLAICGDYDADGMTSTALLIGVLQQLGAQPQAAIPSRQAD 132

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N S++E+   EG +L++TVD G ++ +AL+ A   G++VIV DHH +  E  P  A
Sbjct: 133 GYGLNVSMVEELAAEGIRLLVTVDNGVSAREALERAQALGLEVIVTDHHTIPEERPPLSA 192

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           L++P    + S    L   G+ +++   + +  R          L   LDL  + T+ D+
Sbjct: 193 LLHPQCTPEDSPYRGLAGVGMAYVLAGALAKANR------SAKALAMALDLFCIGTIADM 246

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
            PL G+NR +++ GL   +    PGL+AL +       PI A  +G+ + P INA GR+G
Sbjct: 247 APLQGVNRRWLMDGLPRLKDSPLPGLQALQQVAGLDDVPIDAGAVGFQLAPRINAVGRLG 306

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +  L   LL +DD ++   LA + +  N+ RR +  A+  +A A         Q++  ++
Sbjct: 307 DPRLVVDLLTTDDPEQALELARECESWNRQRRELCDAIEAEARALAEADG--DQRSPFLL 364

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++AARL E +G P   ++ E DG+   S R+ +GF +   +    E  
Sbjct: 365 LAQSHWHHGVIGIVAARLVEHYGTPVALLAAEGDGRMRASVRAPKGFAVDAALQACGE-- 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH  A G TV+      L +     A           +   + +L    +N  L
Sbjct: 423 LLERFGGHPAAGGFTVKAERVTALHERLNDLAQVWREREGLQ-LVMPEALLKLEQINRPL 481

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
              L+   P+G GNP P+F      +   R +   HLQ++   Q    ++A+A+R     
Sbjct: 482 WRELQRLEPFGIGNPTPLFWSCGCTISQQRELRGGHLQLSLR-QGEARVRAMAWRWG--A 538

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           +G  L     K++ V  HL +N W G +  QL V+   P  G 
Sbjct: 539 VGHLL----PKQVDVAYHLRLNRWNGEESLQLEVVGIRPSSGE 577


>gi|187778663|ref|ZP_02995136.1| hypothetical protein CLOSPO_02258 [Clostridium sporogenes ATCC
           15579]
 gi|187772288|gb|EDU36090.1| hypothetical protein CLOSPO_02258 [Clostridium sporogenes ATCC
           15579]
          Length = 588

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 175/590 (29%), Positives = 289/590 (48%), Gaps = 42/590 (7%)

Query: 30  ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
              I  K  I + +  +LVNR + +++  + FLNPS++ L  +PL++ D DK    I +A
Sbjct: 9   IKDIAHKSGISETLCTILVNREIYNLEDIESFLNPSLKKLY-NPLLMKDMDKGTEIIKKA 67

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I + +KI I+GDYD DG  S  ++   L  C  N   YIPDR  +GYG     +EK   E
Sbjct: 68  IIDKKKIAIYGDYDADGVTSTVILYTALKECEANVTYYIPDRETEGYGMCTDRVEKLKEE 127

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----------IPAYALVNPN 198
           G ++IIT D G  + + ++ A   G+ V++ DHH++   E            A  ++NP 
Sbjct: 128 GVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENENGEREYVVPKADVIINPK 187

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG 258
           + D       LC AG+ F    L+Y  L  +           LL+  A+ T+CDVV L  
Sbjct: 188 QKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLEFAAIGTICDVVDLKD 242

Query: 259 LNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLG 317
            NR     GL       N GL+ALI+  +++   IT+ N+G++IGP INA GR+  + L 
Sbjct: 243 ENRIIAKLGLKNINNTNNLGLRALIKETSLNGKNITSYNVGFIIGPCINATGRLDTAALS 302

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             L ++ D +  E LA +L  LN  R+ +    +E+    +  +   ++   V+V+  + 
Sbjct: 303 VELFLTKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--ENSSLKNDKVLVIYKED 360

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
            H  I G+++ R+K+ + RP+  ++ +      GSGRSI+G+++         +  + K 
Sbjct: 361 IHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL--FEELMKCKEYIYKF 417

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGH MAAGLT+E  N  ++ +   K  +  +      P  +ID  L    VN+ LID L+
Sbjct: 418 GGHPMAAGLTIEEKNIDKIREELNKNCN--LKDEDFIPKIRIDKRLPLKEVNLELIDSLQ 475

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SETLQAIAFRVYGTPLG 554
              P+G GN +P+ A  N K++ IR++      L++T   +D +  + AIAF        
Sbjct: 476 CLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRIEDTNRRIDAIAFGKVDEFKR 535

Query: 555 EFLMQS--------------RGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +                    G ++ +  +  +N + G+   QLR++D  
Sbjct: 536 DLENIYGDESIENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLRIIDYR 585


>gi|326561345|gb|EGE11703.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis 7169]
 gi|326566197|gb|EGE16350.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis 12P80B1]
 gi|326570774|gb|EGE20799.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis BC1]
 gi|326573037|gb|EGE23013.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis CO72]
          Length = 589

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 178/578 (30%), Positives = 266/578 (46%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL TV D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL + R+          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA KL+ LNQ RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q    +     +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|154482683|ref|ZP_02025131.1| hypothetical protein EUBVEN_00359 [Eubacterium ventriosum ATCC
           27560]
 gi|149736459|gb|EDM52345.1| hypothetical protein EUBVEN_00359 [Eubacterium ventriosum ATCC
           27560]
          Length = 584

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 167/597 (27%), Positives = 282/597 (47%), Gaps = 45/597 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           RW     +   N    I++K  I  I+AR+L NRN +  +  K +L+P I  L   P + 
Sbjct: 4   RWYLQTKKADFN---EISRKFNISPILARLLRNRNVIGDENIKKYLSPDIERL-SSPWMF 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   +   I    +I +  DYDVDG  S  ++ R L       ++ +P RI DGY
Sbjct: 60  KDMDKAVDILKIKIAAGNRIRVICDYDVDGVCSGYILYRSLKKLGAVVDVVVPHRIEDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-------- 187
           G N +L++K  ++G   I+T D G  +YD ++YA + G+ +IV DHH+V           
Sbjct: 120 GINENLIKKAFDQGIDTILTCDNGIAAYDQVEYAKSLGMTIIVTDHHEVPYTETEQGREY 179

Query: 188 -EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A++N  + D       LC A V F ++  +        +     D+  LL   A
Sbjct: 180 IIPKADAVINHKQKDCGYPFKELCGAMVAFQLISALTESYGISKR-----DVYRLLPYAA 234

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           LAT+CDVV L G NR  V  GL + +   + GL ALI+   I  + I + ++G+++GP I
Sbjct: 235 LATICDVVELQGENRMVVQYGLKMIKNCKDVGLNALIDACKIDKNNIDSYHIGFVLGPCI 294

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL   + ++ ++LA  L  LN  R+ M     ++A      +    
Sbjct: 295 NASGRLDTAKKAMELLSETNREKADILATSLKELNDERKAMTEEGTKKAI-----EIAKD 349

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
              +V+V+     H  I G++A R++E+  +P   ++ +      GSGRSIE +D+    
Sbjct: 350 YDDNVLVIYLKDCHESIAGIIAGRVRERCNKPVIVLT-DAKDCVKGSGRSIEEYDMY--E 406

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + + +K GGH MAAG+++ + N   L     +  ++ +          ID  L  
Sbjct: 407 ELCKVKDLFLKFGGHKMAAGVSLPKENIELLRKRLNE--NSTLTEDDLCLKVWIDMQLPI 464

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
             +++ L++ L++  P+G GN  P+FA  N K++ ++++      L++T E+  +  + A
Sbjct: 465 EYISMNLVEELKTLAPFGKGNEKPIFADKNLKIKKLQILGKAGNVLKLTIENSTNYRMTA 524

Query: 544 IAFRVYGTPLG-------------EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           I F      +G               L Q+       T +  +N +RG+   Q+ + 
Sbjct: 525 IMFDRTQEFMGFIKEKFGQEEINKALLGQNNAITFMATFYPTINEFRGNIDLQIVID 581


>gi|238020450|ref|ZP_04600876.1| hypothetical protein GCWU000324_00332 [Kingella oralis ATCC 51147]
 gi|237867430|gb|EEP68436.1| hypothetical protein GCWU000324_00332 [Kingella oralis ATCC 51147]
          Length = 570

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 182/583 (31%), Positives = 271/583 (46%), Gaps = 33/583 (5%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
                 +  AL   Q      ++A++   RNV+       LN S++ L+P    LT+C  
Sbjct: 10  RPINPQLQSAL---QAAGANPLIAQLYAARNVADS---SELNDSLKQLIPY-TQLTNCTA 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           AA R+  AI   +KI+I  DYD DGA + ++ M+ L+      + ++P+R   GYG  P 
Sbjct: 63  AASRLADAIQAQQKILIIADYDADGATACSVAMKGLASMGAAVDFFVPNRFEHGYGLTPE 122

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
           L +    +GA LI+TVD G +S + +  A   G+DVIV DHH      IP   +VNPN+ 
Sbjct: 123 LADIAHAKGADLIVTVDNGISSAEGVARAKALGLDVIVTDHHIAG-SVIPDCIIVNPNQR 181

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-----FDLLSLLDLVALATVCDVVP 255
                   +   GV+F VL+ +   LR  +            L  LLDLVAL TV DVVP
Sbjct: 182 GCTFPSKSIAGVGVIFYVLIALRAELRARDYFSGCRAIAEPKLDELLDLVALGTVADVVP 241

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R                  +      + GY I P INA GR+ +
Sbjct: 242 LDHNNRILVSQGLKRIRAGKMSHGIRALFQTARCSAQKAQPFDFGYKIAPRINAAGRLDD 301

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            ++G   L+S    E E +A +L+ LNQ R+ +E  ML    A   +     Q    + V
Sbjct: 302 MSIGIACLLSGSLNEAESMASELNELNQTRQEIEQEMLTDILADCPSALPSEQT--TLCV 359

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEE 431
             D +H G+VG++A+RLKEKF RP F  + ++DG   GSGRSI G  +  ++        
Sbjct: 360 YRDSFHQGVVGIVASRLKEKFYRPVFVFAPDDDGNYRGSGRSIAGVHLRDVLDAISKHAP 419

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            I++K GGHAMAAGLT+   +     D F+    + V     +  F  DG L AS + +A
Sbjct: 420 EIIIKFGGHAMAAGLTLRSGSLKTFGDLFEDIVRSQVNEDTLSQTFLTDGSLKASDITLA 479

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
              ++  A  +G G P P FA    ++   + +     H +    +++ +  +A+ +R  
Sbjct: 480 NAQLIN-AQIWGQGFPPPSFADT-FQVLRQQSMGADKKHTKAWL-TKEGQEFEAMFWRCE 536

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            T           + + V     VN WRG+   QL V      
Sbjct: 537 DT---------LPRDIRVVYRPTVNEWRGNTELQLYVDYWEAA 570


>gi|225872650|ref|YP_002754107.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794055|gb|ACO34145.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium
           capsulatum ATCC 51196]
          Length = 592

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 172/593 (29%), Positives = 279/593 (47%), Gaps = 26/593 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S  RW+       +  ALA   +   P ++A +L  R  S  + A+ FL PS+  L+ DP
Sbjct: 15  SSRRWLLDAVDPAVAAALAREARL--PLLIAELLAARGASSAEAARAFLAPSLDDLL-DP 71

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             +    +A  RI QA    E ++I+GDYDVDG  +  L+   +         ++P R+ 
Sbjct: 72  YSMRGMAEAVARIEQAAARHETMLIYGDYDVDGTTATVLLKTAIERLGGTVRFHVPHRLR 131

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIP 190
           +GYG    ++E    +G +L+I+VD G  ++ A + A   G+D+IV DHH  +  +    
Sbjct: 132 EGYGMQREILESAAADGVRLVISVDTGIRAFAAAEAAAELGLDLIVTDHHLPEDGTGIPR 191

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NPN+        +LC AGV F +   +     QD  +     L S L ++A+ATV
Sbjct: 192 ALAVLNPNQPGCEYACKYLCGAGVAFKLSQALLEK--QDRTLARTKILPSFLKMLAIATV 249

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINA 307
            D VPL+G NR  V  GL   RR  N GL+AL+    +      ITA ++ + + P INA
Sbjct: 250 ADAVPLLGENRTIVSIGLAELRRPVNAGLRALLTEAKLDPARKAITATDVAFRLAPRINA 309

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+  ++    L  + D Q    LA KL+ LNQ+RR  E+A+LE+   ++        +
Sbjct: 310 AGRMDIASEVVELFTTRDPQRARDLAAKLEQLNQDRRATEAAILERILERLAE--PHFAE 367

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
           A  IV++G+ WH G++G+LA+R+ ++ G+P+  IS  EDG+  GSGRSI G+ + + +  
Sbjct: 368 ARCIVMDGEGWHRGVLGILASRILDQTGKPALVIS-HEDGEAHGSGRSITGYHLLEALES 426

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                +  K GGHA A G ++       L     + A   +              L    
Sbjct: 427 CH--DLFTKFGGHAHAVGFSMPSERVPELRARLVEHAAERITEQDLGGPLVCHAELALDH 484

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQ-DSETLQAIA 545
           +  A    L    P+G GN  PVF     +L   +R +   H++++         + A+ 
Sbjct: 485 ITAAAFSWLRRLEPFGMGNEEPVFVARKVRLAGPVRTMKEKHVRLSLSHGPRGVRISALG 544

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVN---YWRGSKRCQLRVLDASPVEGH 595
           +          L       +++   L  N    + G    +L ++D  P +  
Sbjct: 545 WHWAERVA--ALGIQEDDLLNIAYRLRENEHPEYGG---LELEIVDLQPADSE 592


>gi|326564253|gb|EGE14487.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis 46P47B1]
          Length = 589

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 178/578 (30%), Positives = 265/578 (45%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL TV D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL + R+          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA KL+ LNQ RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q          +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIKKADFERFNQALQAVLLG-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|315658094|ref|ZP_07910966.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           lugdunensis M23590]
 gi|315496423|gb|EFU84746.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           lugdunensis M23590]
          Length = 758

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 159/591 (26%), Positives = 288/591 (48%), Gaps = 29/591 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W      + I+    I +K+ +  I+ +VL ++++ +    +  LN      + +P
Sbjct: 4   SKYTWNHNEPTQYID--EQIAKKYKLSPIIKKVLESKHIVNEKDIEGLLNGQ--QQLHEP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D  KA  RI  AI   E+I+I+GDYD DG  S  +M++ L         YIP+R  
Sbjct: 60  WLLSDMTKAIERINLAIDKHERILIYGDYDADGVTSTTIMVKTLQSLGAEVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  ++     G+DVIV DHH++ S    A+
Sbjct: 120 EGYGPNELAFKNAYDEGVSLIITVDNGIQGHREIEMIQELGVDVIVTDHHEMGSTLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + V   + +     N VP        + L ++ T+ D
Sbjct: 180 AIVHPMHPEFDYPCPNLCGAGVAYKVSQALLK-----NNVPPY-----YIALASIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V  GL +        + AL+   N + PI  E +G++IGP +NA GR+ 
Sbjct: 230 LVSLTDENRTIVKTGLSILNDYQPIQIAALLNEANYNDPIDEETIGFIIGPRLNAVGRLE 289

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+++D++E   LA +++  N  R+ + S + E+A      +    +    ++
Sbjct: 290 DASLAAELLMTEDAEEAAFLAEQVNHFNNERKDIVSKITEEALLLAKEEVA--KGRQFLL 347

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+R+ E +G P+  ++  +E     GS RSIE   +      +  +
Sbjct: 348 LAKENWHEGVLGIVASRIVETYGLPTLILNIDDEQHYAKGSARSIEQVSM--FEILSDHQ 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L +    +  N+          +ID  +    + + 
Sbjct: 406 NLISKFGGHHMAAGMTMPIENISELREGLNTWMANLAETTSLDQKKQIDVKITEDEITVN 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +E   P+G     P+F   +  + S++ +     HL+MT  + +  TL    +   
Sbjct: 466 NIYDIERLKPFGIDFNKPLFELDDVNVNSLKAIGKDKNHLKMTIGNSNLATL---YWNS- 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           G+ + E  +    + +++ G L +N W G++  Q  + D +  +      +
Sbjct: 522 GSLVDELELN---QPINMIGQLQINEWNGNQSPQFIIQDIAINQQQILDYR 569


>gi|238923690|ref|YP_002937206.1| SsDNA exonuclease, RecJ [Eubacterium rectale ATCC 33656]
 gi|238875365|gb|ACR75072.1| SsDNA exonuclease, RecJ [Eubacterium rectale ATCC 33656]
          Length = 586

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 170/600 (28%), Positives = 282/600 (47%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +       AI  K  I  + AR++ NR  +  D   +FLN  +   + DP +L
Sbjct: 3   KWYVSAKRADFA---AIGAKFGIDQVTARIIRNRGVIGDDAVNEFLNGKLSD-IADPALL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +    + Q I +  KI I GDYD+DG  S  ++++ L       +  IPDR+ DGY
Sbjct: 59  KDGQRLVDILAQKIADKVKIRIIGDYDIDGVMSTYILVKALKRAGACVDYMIPDRVKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L++K   +G   ++T D G  + + + +A   G+ V+V DHH V           
Sbjct: 119 GLNVHLIDKAYEDGIDTVVTCDNGIAAIEEIAHAKELGMTVLVTDHHAVPFEDIKGIKIY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +E  A A+VNP++++       LC A V + +++L+YR +  D K       +  ++ VA
Sbjct: 179 KESKADAVVNPHQIECSYPYKELCGAAVAWKIVILLYRKIGIDEKET-----MDFIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
            ATV DV+PL G NR  V  GL       N G+KAL+E  NI    + A + G+++GP +
Sbjct: 234 FATVGDVMPLTGENRILVKAGLKSIHHTTNIGMKALLECCNIEAENVDAYHFGFVLGPCV 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     L + D  +E   +A +L  LN +R+ M +  +E A      + D+ 
Sbjct: 294 NATGRLDTAKRALELFLCDRQEEAMRIASELVALNDDRKEMTAKGVETAVEIY--ERDNY 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+V+     H  I G++A R++EK+ +P+F ++  EDG   GSGRSIE + +    
Sbjct: 352 EKDRVLVIYLPDVHESIAGIIAGRIREKYNKPTFILTKSEDGV-KGSGRSIEEYSMY--E 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +  K GGH MAAGL++ + N         ++A   +      P   ID  +  
Sbjct: 409 EMCKCSELFTKFGGHPMAAGLSLPQENVEPFRQKINEYAS--LTDDDLVPKIHIDVPMPV 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             V++ L+       P+G  NP PVFA  N ++  + VV   +  L+++  S     + A
Sbjct: 467 DYVSMRLVSEFSVLAPFGKDNPKPVFADKNLRVSRMWVVGKNNNVLRLSLISSYGTPINA 526

Query: 544 IAFRVYGTPL--------GEFLMQSRGKRMH-----VTGHLCVNYWRGSKRCQLRVLDAS 590
           I F    +           + L  ++  R +     V     +N +R ++  Q  +    
Sbjct: 527 IYFGDIESFFDYIRQRFGSDALEAAQRGRFNNIVLSVVYSPKINVFRENESLQFEIQYYK 586


>gi|291528183|emb|CBK93769.1| exonuclease RecJ [Eubacterium rectale M104/1]
          Length = 586

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 170/600 (28%), Positives = 282/600 (47%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +       AI  K  I  + AR++ NR  +  D   +FLN  I   + DP +L
Sbjct: 3   KWYVSAKKADFA---AIGAKFGIDQVTARIIRNRGVIGDDAVNEFLNGKISD-IADPALL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +    + Q I +  KI I GDYD+DG  S  ++++ L       +  IPDR+ DGY
Sbjct: 59  KDGQRLVDILAQKIVDKAKIRIIGDYDIDGVMSTYILVKALKRAGACVDYMIPDRVKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L++K   +G   ++T D G  + + + +A   G+ V+V DHH V           
Sbjct: 119 GLNVHLIDKAYEDGIDTVVTCDNGIAAIEEIAHAKELGMTVLVTDHHAVPFEDIKGIKIY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +E  A A+VNP++++       LC A V + +++L+YR +  D K       +  ++ VA
Sbjct: 179 KESKADAVVNPHQIECSYPYKELCGAAVAWKIVILLYRKIGIDGKEA-----MDFIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
            ATV DV+PL G NR  V  GL       N G+KAL+E  NI    + A + G+++GP +
Sbjct: 234 FATVGDVMPLTGENRILVKAGLKSIHHTTNIGMKALLECCNIEAENVDAYHFGFVLGPCV 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     L + D  ++   +A +L  LN +R+ M +  +E A      + D+ 
Sbjct: 294 NATGRLDTAKRALELFLCDRQEDAMRIASELVALNDDRKEMTAKGVETAVEIY--ERDNY 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+V+     H  I G++A R++EK+ +P+F ++  EDG   GSGRSIE + +    
Sbjct: 352 EKDRVLVIYLPDVHESIAGIIAGRIREKYNKPTFILTKSEDGV-KGSGRSIEEYSMY--E 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +  K GGH MAAGL++ + N         ++A   +      P   ID  +  
Sbjct: 409 EMCKCSELFTKFGGHPMAAGLSLPQENVEPFRQKINEYAS--LTDDDLVPKIHIDVPMPV 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             V++ L+       P+G  NP PVFA  N ++  + VV   +  L+++  S     + A
Sbjct: 467 DYVSMRLVSEFSVLAPFGKDNPKPVFADKNLRVSRMWVVGKNNNVLRLSLISSYGTPINA 526

Query: 544 IAFRVYGTPL--------GEFLMQSRGKRMH-----VTGHLCVNYWRGSKRCQLRVLDAS 590
           I F    +           + L  ++  R +     V     +N +R ++  Q  +    
Sbjct: 527 IYFGDIESFFDYIRQRFGSDALEAAQRGRFNNIVLSVVYSPKINVFRENESLQFEIQYYK 586


>gi|326571651|gb|EGE21666.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis BC7]
          Length = 589

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 178/578 (30%), Positives = 266/578 (46%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIIEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL TV D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL + R+          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA KL+ LNQ RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q    +     +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|296112582|ref|YP_003626520.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis RH4]
 gi|295920276|gb|ADG60627.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis RH4]
 gi|326577704|gb|EGE27580.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis O35E]
          Length = 589

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 178/578 (30%), Positives = 268/578 (46%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL TV D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL + R+          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA+KL+ LNQ+RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLAIKLNQLNQSRRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q    +     +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|326560166|gb|EGE10555.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis 103P14B1]
          Length = 589

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 178/578 (30%), Positives = 267/578 (46%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL TV D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL + R+          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA+KL+ LNQ+RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLAIKLNQLNQSRRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q          +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIKKADFERFNQALQAVLLG-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|257468131|ref|ZP_05632227.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062416|ref|ZP_07926901.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688092|gb|EFS24927.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           ulcerans ATCC 49185]
          Length = 860

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 162/581 (27%), Positives = 293/581 (50%), Gaps = 26/581 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RWV     +   +     Q   +   +  +L NRN++  +  K+FL+ +I+  + DP  L
Sbjct: 5   RWVYK---DNSLKNNKDIQTLNLDKDILNLLYNRNITEKEEIKNFLDVNIKN-IADPFSL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA +R+ QA  N+E + ++GDYDVDG  SV+L    LS   +N   YIP R  +GY
Sbjct: 61  KDVDKAVKRLTQAKENNETVWVYGDYDVDGITSVSLCYLALSELGINVKYYIPLR-DEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   ++   +EG  LIITVDCG +S+  + +A + GID+IV DHH++ +    A A++
Sbjct: 120 GLNMEAIDHIKSEGGTLIITVDCGISSHKEIAHAASLGIDMIVTDHHEINNGNPEALAVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP R D+     +L   G  F+++   ++ L ++       ++   LD+VA+ TV D+VP
Sbjct: 180 NPKREDNDYEFKYLAGVGTAFMMISAFFKTLGKE------EEVYKYLDIVAIGTVADIVP 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI---TAENLGYMIGPSINAGGRIG 312
           L+  NR +V +GL   +R    GL  LI+++     I      ++G++I P  NA GR+ 
Sbjct: 234 LLKENRIFVKEGLEHLKRSRWLGLNMLIKKIFEDHDIRKFNTYDIGFIIAPIFNAVGRLE 293

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I  D +        L   N  R+ ++  + ++A  KV  + + + + SV++
Sbjct: 294 DAKKAVELFIEKDHRVCSASIKDLLEKNSERKEIQEEIFQKAIEKV--ENEKLYENSVLI 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V  + +H G++G++A+++ +++ +P+  +    ++G    S RSIEGF+I + ++     
Sbjct: 352 VGEEGFHHGVIGIVASKILDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAIN--NFS 409

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+K GGH+ AAG +++  N         ++A N +         K+D  L    ++  
Sbjct: 410 DLLIKYGGHSGAAGFSIKIENIEEFSRKLNEYAENAMEDSTLIKPVKVDKPLPFYKISYD 469

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            +D +    P+G GNP+P+F+  N +   +R++     HL M      +E    + F   
Sbjct: 470 FLDKISLLEPFGFGNPSPLFSLDNCQFDGLRLIGKDKKHLMMNIIKNGNEIRNCVWFNSD 529

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 F      + + +   L +  ++   + ++ V D  
Sbjct: 530 DV----FEDLVNLRNIDIAFKLKLETYKDRYQYKMYVEDIR 566


>gi|332653664|ref|ZP_08419408.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcaceae
           bacterium D16]
 gi|332516750|gb|EGJ46355.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcaceae
           bacterium D16]
          Length = 687

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 179/580 (30%), Positives = 282/580 (48%), Gaps = 25/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
             W    G   + + L       IP ++A +L  R ++  D A+  L P    ++ DP++
Sbjct: 4   KEWSMPSGSPRVRQNLEAA---GIPALLAAILAARGITQPDQARRLLTPGAEPVL-DPML 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D+AA R+ +A+   E + ++GDYDVDG  S  L+   L         YIPDR+ +G
Sbjct: 60  LRDMDRAAARVRRALETGEHLAVYGDYDVDGITSTCLLTDCLRRMGGQVTPYIPDRLEEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +    ++G  LI+TVDCG T+ + + +A   G+DV+V DHH+ K     A A+
Sbjct: 120 YGLNLEAIHTLADQGVTLIVTVDCGITAVEEVAFAAGLGVDVVVTDHHECKDPLPAAVAV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P+R D       L   GV   + + +    R               DL A+ TV DV+
Sbjct: 180 VDPHRSDCPYPFKGLAGVGVALKLAMAVAGPERARQVF------EDYADLAAVGTVADVM 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           P+ G NR  V  GL         GL  LI+       P+T+ ++GY + P INA GR+G+
Sbjct: 234 PMTGENRTIVQTGLAALAHPKRLGLAQLIQEAGLGERPLTSVSIGYTLAPRINAAGRMGK 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L   LL++   Q  + LA +L  LN+ R+ +E  + ++   ++  Q     Q   IV+
Sbjct: 294 AALAGELLLTHSPQRAQELAQELCQLNRERQNIEGEIFQECIQRLDHQ----PQQGAIVL 349

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G+VG++A+RL EK+  P+F I   + G G GS RS  G ++ +++       +
Sbjct: 350 ADPEWHQGVVGIVASRLSEKYTCPTFMI-CLDQGMGKGSCRSWGGINLFELLMTC--GDL 406

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGHA+AAG  V   N   L    ++             V + DG++    +++A +
Sbjct: 407 LESFGGHALAAGFMVREENIPALAQRLRQGVLEQQAGQEPPSVLETDGIVQPQQLDVASV 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
           + L++  P G GNP PV       +QS   V    HL++  E++    L AI F      
Sbjct: 467 EALDALEPCGTGNPRPVLVITGAHVQSAVQVGRGRHLKLRLEAR-GSVLDAIFFSADAAQ 525

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           LG     + G R+ V  +  +N +RG +  QL+V+D  P 
Sbjct: 526 LG----VTPGCRVDVAFYPQINEFRGVRSVQLQVVDLHPA 561


>gi|258424061|ref|ZP_05686943.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A9635]
 gi|257845682|gb|EEV69714.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A9635]
          Length = 757

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 160/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKAIERIKRAIVNDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNNQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGTVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|329770500|ref|ZP_08261878.1| hypothetical protein HMPREF0433_01642 [Gemella sanguinis M325]
 gi|328836249|gb|EGF85918.1| hypothetical protein HMPREF0433_01642 [Gemella sanguinis M325]
          Length = 752

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 160/581 (27%), Positives = 274/581 (47%), Gaps = 29/581 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           + W      E     L   +++ I + +A++L +R ++ I+  K + +        DP +
Sbjct: 5   YNWNYPQYDETFLNDL---KEYNISENIAKILDSRGINKIEEVKKYFSDDYEEGY-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  +A  RI  AI N EKI+++GDYD DG  S  L++  L     + + YIP+R  +G
Sbjct: 61  MHDMKRAVERINNAIENEEKILVYGDYDADGITSTVLLVETLVSLGADVSSYIPNRFEEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN     K I  G  LIITVD G    D ++ A + G DVI+ DHH+++ E   AYA+
Sbjct: 121 YGPNKDAFSKIIKSGISLIITVDNGIAGVDEVELANSLGCDVIITDHHKIQDEIPKAYAV 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +     G L   GV F +   +  I               LLDLVA+ TV D+V
Sbjct: 181 IHPEHPEGQYPFGKLAGVGVAFKLAHALLEIYPD-----------FLLDLVAIGTVADMV 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L   NR +V +G+ +       G+K L+E  NI++ I  + +G+ I P +N+ GR+  +
Sbjct: 230 SLTDENRIFVKQGIELLNEDPRIGIKMLLELSNITTNIDEQTIGFYIAPRLNSIGRMDSA 289

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            +G   L+++D    + LA +++  N  R+ +   +++     +  + +DI+  SVI+V 
Sbjct: 290 KVGLSFLMAEDISVAKSLAEQIEEYNVQRKEVTENIVKDVIETI--ENNDIKNKSVIMVS 347

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           GD +H G++G++A+ + EK+ RP   ++ +E G   GS RS+  F+I   ++        
Sbjct: 348 GD-YHEGVLGIVASNIVEKYQRPVLIMNNKE-GILKGSARSVFNFNIYTAINK--IGDKF 403

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +  GGH +AAG + +  NF  +                      ID V +   V+   ++
Sbjct: 404 IAYGGHTLAAGFSFDEQNFKEIEKALCDEFDEYKNNNELKSTKNIDIVSSLEEVSYQFLN 463

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            LE   P+G     P     N K+           +L++T   +    L+ I+F+     
Sbjct: 464 SLEVLKPFGMDFEKPNILLENAKVIEKVYFGADKQYLRLTIADEVGN-LECISFKDNMI- 521

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              F   +    + +   L  NY+ G  + Q  ++D    E
Sbjct: 522 ---FKDVNVNDTIDLLCTLDKNYFNGRTKLQAHIIDMQVKE 559


>gi|260589632|ref|ZP_05855545.1| single-stranded-DNA-specific exonuclease RecJ [Blautia hansenii DSM
           20583]
 gi|331083064|ref|ZP_08332181.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260539872|gb|EEX20441.1| single-stranded-DNA-specific exonuclease RecJ [Blautia hansenii DSM
           20583]
 gi|330405066|gb|EGG84603.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 571

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 161/588 (27%), Positives = 277/588 (47%), Gaps = 33/588 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +WV    +        I+ +  +  ++AR++ NR  ++ +    +L+  +R L P    L
Sbjct: 3   KWVVAAKKADFQ---GISNRFGVDPVIARLIRNREQITDEEIDTYLHGKLRNLHP-WKAL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              D+    +++ I   +KI I GDYD+DG  S  ++ + L   +  A++ IPDR+ DGY
Sbjct: 59  KGIDELLNILIEKIQQKKKIRIIGDYDIDGVCSTYILFQGLKKANALADVDIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  L+E+   +    IIT D G ++ + + YA  + + V+V DHH++  EE       
Sbjct: 119 GISKELIERAYEKEIDTIITCDNGISAIEQIAYAKEKNMTVLVTDHHEIPYEEKEDGSIE 178

Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A A+VNP +         +C A V F V+  ++             ++  L+ + 
Sbjct: 179 RFLPNADAIVNPKQEGCAYPFKEICGAMVAFKVVWGLFEKRNI-----PLSEIEELIPIA 233

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATV DV+ L+  NR  V +GL   +   N GLKALI   N  +  ITA ++G+++GP 
Sbjct: 234 AIATVGDVMDLVDENRILVKEGLKRIQNTNNEGLKALIRVNNLENREITAYHIGFVLGPC 293

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +     LL+S D++E  +LA  L  LN +R+ M    +E+A   +  +  +
Sbjct: 294 INASGRLSTAKRALELLLSKDTKEASVLAEDLKELNDSRKDMTVKGVERAVEII--ENTE 351

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   V+VV     H  + G++A R++E++ +P F ++  E+G   GSGRSIE + +   
Sbjct: 352 LKNDRVLVVYLPECHESLAGIIAGRIRERYTKPVFVLTKGEEGV-KGSGRSIEAYHM--F 408

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                   +L K GGH MAAGL++E  N  +      +     +          ID  + 
Sbjct: 409 QEMVKCRELLTKFGGHPMAAGLSMEEENIEKFRRKLNENC--TLTEEDMVEKIVIDVPMP 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
            S V I LI  L    P+G GN  P+FA  + +  + +V       ++M  +       +
Sbjct: 467 MSYVTIPLIRQLGQLEPFGKGNTKPIFAQKDIRFSNCKVFGKNRNVVKMKAQDSFGFGAE 526

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            I F      L             V  +  VN ++G +  ++ + +  
Sbjct: 527 CIWFGDGDEFLERL---KEKDVWDVIYYPSVNSFQGRESIEMIIQNIR 571


>gi|332284079|ref|YP_004415990.1| single-stranded-DNA-specific exonuclease [Pusillimonas sp. T7-7]
 gi|330428032|gb|AEC19366.1| single-stranded-DNA-specific exonuclease [Pusillimonas sp. T7-7]
          Length = 574

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 175/580 (30%), Positives = 268/580 (46%), Gaps = 28/580 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
                      + A+ +   I  +++R+   R VS          +   L+P P  LT  
Sbjct: 9   KLSTRSNNFEASQAL-EGAGIHPLLSRLWAARGVSHPNETRL---AWGALIP-PGQLTHV 63

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA+ +  AI   +K++I  DYD DGA + A+ +R L       +  +P+R   GYG +
Sbjct: 64  QHAAQVLADAIQARKKLLIVADYDCDGATACAVGLRALRSMGAIVDFLVPNRFETGYGLS 123

Query: 139 PSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           P+++E   +       ++ITVD G  S D ++ A   G+DV++ DHH        A A+V
Sbjct: 124 PAVVELAVQHAAGKPDMLITVDNGIASVDGVEAAKQAGMDVVITDHHLPGDTLPQALAIV 183

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253
           NPN+        +L   GV+F +++ +   LRQ      +    L +L DLVAL TV DV
Sbjct: 184 NPNQPGCGFPSKNLAGVGVIFYLMLALRAELRQRGVYAADGGPRLDNLADLVALGTVADV 243

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRI 311
           V L   NR  V +GL   R                      +  +LG+ +GP INA GR+
Sbjct: 244 VKLDANNRLLVTQGLQKMRSARMQAGVRALFAVAGREPRQASCFDLGFALGPRINAAGRL 303

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + +LG   L +DD  E   LA +L+ +NQ RR +E+ M E+A A +  Q      A+ +
Sbjct: 304 ADMSLGINCLTTDDEGEALNLARQLETMNQERRGIEATMREEALAAI--QTSQPSIAASV 361

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429
            V    WH G+VGL+A+RLKE + RP+ A +   DG+  GSGRSI    +  ++      
Sbjct: 362 CVYHPDWHQGVVGLVASRLKETYWRPTLAFARAGDGELRGSGRSIPDVHLRDVLDLVSKR 421

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             GI++K GGHAMAAGLT+    +      F      +       PV + DG L     N
Sbjct: 422 HPGIILKFGGHAMAAGLTLREDAYEVFIKAFDSAVREMSGKASFDPVIETDGSLETGYAN 481

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
             +  +L+    +GAG P P+F     +++  R++   HL+++ E +  +   AI F   
Sbjct: 482 AEVASLLQQ-QVWGAGFPAPIFRDT-FQVRQQRLLKEKHLKLSLE-RGHQRFDAIWFNHA 538

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                        +R  V   L +N W G    QL V  A
Sbjct: 539 DM---------LPERADVAYRLDLNVWNGITSAQLIVEYA 569


>gi|319400962|gb|EFV89181.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis FRI909]
          Length = 757

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 153/591 (25%), Positives = 280/591 (47%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W     Q     + + + +  +  IV +VL ++N+      ++    +   +  D 
Sbjct: 4   SKYNWDI--TQPDTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFKDT--NISHDY 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L+D  KA  RI  AI ++E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  MLLSDMQKAIDRIKLAIDHNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  +      G+DVIV DHH++      A+
Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   + +   Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIKHPPQ-----------HFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V +GL +        +KA++ +   +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRYIVKQGLKILNSHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD+ +E E LA +++  NQ R+ + S + ++A      Q +  Q    ++
Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNQERKDIVSKITDEALILAEEQIN--QGHLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ +E      GS RSIE   +         +
Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L     ++   +       P  K+D  L  + +NI 
Sbjct: 405 QLIDKFGGHHMAAGMTMPIDNIEGLHKELDEWMKELTVTTSLEPSIKVDAQLEETEINIK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +    P+G    +P+F   +  ++S + +     HL++T        L A+ +   
Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                        + +H+ G L +N W G++  Q  + D +  +      +
Sbjct: 522 HL----ASELEASQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568


>gi|158336032|ref|YP_001517206.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina
           MBIC11017]
 gi|158306273|gb|ABW27890.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina
           MBIC11017]
          Length = 795

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 155/597 (25%), Positives = 268/597 (44%), Gaps = 35/597 (5%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S    RW              I     +  ++A VL N+ + S++ A+ FL P  + L  
Sbjct: 5   SFPQQRWQI--ADPEHTLVDKIAIATGLSPLLAAVLANQGIGSVEAAQQFLAPESQSLPS 62

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
                 D   +   +  AI +  KI I GDYD DG  S AL++R L     + +  IP R
Sbjct: 63  PLEAFPDLAASLTLLQDAIASRHKIAICGDYDADGMTSTALLLRVLRALGADVDYAIPSR 122

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG N  ++E+F  +   L++TVD G  +YD +  A   G+ VI+ DHH +  +  P
Sbjct: 123 MQEGYGINQRIVEEFAADNVTLVLTVDNGIAAYDPIVRARELGLTVIITDHHDLPPQLPP 182

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A A++NP  + + S    L   GV +++  L+ +             +  LL+L  L T+
Sbjct: 183 ANAILNPKLVPEDSPYRGLAGVGVAYVLATLLAQEQG------NTTLITPLLELFTLGTI 236

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINA 307
            D+ PL+G+NR ++ +GL +       G+++L++          +  + +G+ +GP INA
Sbjct: 237 ADLAPLVGVNRRWLQRGLALLPHSRLAGVQSLMQVSGCVSADQALKPDAIGFRLGPRINA 296

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ------ 361
            GRI +      LL +DD       AM+ +  NQ+RR + + +  +A   V T       
Sbjct: 297 VGRIADPQTVIELLTTDDPGIAFARAMQCEQANQHRRQLCADIEIEAIELVETLVRQGKA 356

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF--EEDGKGIGSGRSIEGF 419
               +   VI++    WH G++G++A+RL E++G P F  ++  E+     GS R I  F
Sbjct: 357 PWQPEGDWVIMLVHPGWHHGVIGIVASRLVERYGLPVFIATYEAEDHTHIRGSARGIPEF 416

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+   +    E   L + GGH  A G ++      ++    + +AH  +      P+  +
Sbjct: 417 DVFAALQACDE--ALGRYGGHRAAGGFSLATDQLEKMRSHLRTYAHQTLQIDQLKPLVTV 474

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTF---- 533
           D   + + ++  L + +    P G GNP P+F   N ++   R V     HL++T     
Sbjct: 475 DAQASFTQIDWDLYEQINQLHPCGIGNPEPIFWTANVEVVEQRPVGKDKSHLKLTLAHTE 534

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                + ++ +A+R               +R+ V   L  N W      +L +L   
Sbjct: 535 SDDRQQLIKGMAWRWGTYY-------PLPQRIDVAYRLRENTWNQQTNLELEILGIR 584


>gi|330894548|gb|EGH27209.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 502

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 168/506 (33%), Positives = 258/506 (50%), Gaps = 16/506 (3%)

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           +I GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+I
Sbjct: 2   LIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLI 61

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV
Sbjct: 62  TVDNGISSVEGVAAAKAAGLQVLVTDHHLPGHEPPAADAIVNPNQPGCTFPSKSLAGVGV 121

Query: 215 VFLVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
           +F VL+ +   LR             +L  LLDLVAL +V DVVPL   NR  V +GLM 
Sbjct: 122 IFYVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMR 181

Query: 271 ARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            R  +  PGL+A++E      S IT+ +LG++IGP +NA GR+ + +LG   L+ DD   
Sbjct: 182 IRAGRARPGLRAILEVARRESSHITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTL 241

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
              +A++LD LNQ+R+ +E  M  +A A++     +     + + + + WH G++G+LA+
Sbjct: 242 AREMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILAS 300

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGL 446
           RLKE++ RP+ A +   +G   GS RS+ GF I   +    A    ++ K GGHAMAAGL
Sbjct: 301 RLKERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGL 360

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++   NF    + F       +     T     DG L     ++ L   L +AGP+G   
Sbjct: 361 SLPEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHF 420

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P P+F     +L   RVV   HL+M  +++  S  L  IAF V      +       + +
Sbjct: 421 PEPLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWV 475

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASP 591
            +   L +N +RG++  QL V+  +P
Sbjct: 476 ELAYKLDLNEFRGNETVQLMVVHIAP 501


>gi|313884153|ref|ZP_07817919.1| single-stranded-DNA-specific exonuclease RecJ [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620600|gb|EFR32023.1| single-stranded-DNA-specific exonuclease RecJ [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 776

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 161/580 (27%), Positives = 279/580 (48%), Gaps = 27/580 (4%)

Query: 16  FRWVSLLGQEGINR--ALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           + WV        +        +K      + R+   R +        L  S + +  DP 
Sbjct: 8   YEWVLPTLDSNSSDLSVFKEAEKKYSSAFL-RLCYQRGIDSLETLTALEESSQAIFHDPF 66

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            L D  KA  R+  AI + E I+I+GDYD DG  S  ++   L     N   YIP+R++D
Sbjct: 67  ELFDMAKAIDRLQAAIASQEAILIYGDYDADGITSTLILYESLQAVGANVTYYIPNRLID 126

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN    ++ I++G QLI+T D G   ++A+ YA ++G+DVIV DHH+++     AYA
Sbjct: 127 GYGPNKDRYQRLIDQGCQLILTCDNGVAGFEAIDYANHRGVDVIVTDHHEIQDHLPNAYA 186

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P         G L  AGV   V+  +   +            L  ++L A+ TV D+
Sbjct: 187 IVHPRHPQGSYPFGDLSGAGVALKVVSALLEEIP-----------LESVELAAIGTVADL 235

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIG 312
           V L   NR  V +GL + R+    GL  ++    +       + +G++IGP +NA GR+G
Sbjct: 236 VSLTDENRTIVKQGLQLMRQSSRLGLDLILTNNQVDRNKLTSDTIGFIIGPRLNAIGRLG 295

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +    LL S DS E + L   ++  NQ R+ +   ++ Q + ++ +         +I+
Sbjct: 296 DPSPAFELLASFDSSEAQALYELIESKNQERQAIVKKIMTQIQTRIESYPS---LPDIII 352

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
                W  G+VG++A RL EK+ RP+       + G   GSGRS+   ++      +  +
Sbjct: 353 EADPDWPAGVVGIVAGRLLEKYHRPALVFQEQRDQGVYKGSGRSLPRVNLFDW--LSQNK 410

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
           G L++ GGH+ AAG+T+E   F    +     +     A++     K+DG L    +N+ 
Sbjct: 411 GFLMQFGGHSQAAGMTIESSQFPAFKEAMLSSSQAYQAAILAPSQLKLDGRLAIDEINLD 470

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQD-SETLQAIAFRVY 549
           L+  ++  GP+G  NP P++   + +++ I+ +    H+++     D   +L+ + F + 
Sbjct: 471 LVQEIDHLGPFGMDNPQPLWLLEDVQIERIQAIGDQTHIKLRVRGSDQGSSLEVLGFSMA 530

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               G     S G ++ + G L +N W+G ++ Q+ + D 
Sbjct: 531 DQCQG----LSPGMQVSLVGQLVINEWQGRRQVQIHMKDI 566


>gi|169831063|ref|YP_001717045.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637907|gb|ACA59413.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 857

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 165/579 (28%), Positives = 280/579 (48%), Gaps = 35/579 (6%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W     +  ++R   + ++  I ++ A++LVNR + ++  A+ FL+  +  L   P +
Sbjct: 5   REWRLKKPEPVLSR--MLARECGISELTAQLLVNRGIITVREARIFLDGDLDSLW-SPYL 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D      RI  A+   EKI+++GDYD DG  + ALM+  L         +IP R  DG
Sbjct: 62  LRDMAPTVDRIRGALAAGEKILVYGDYDADGMTAAALMVAALRTLRGRVEYHIPWR-ADG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG NP ++E+   +G  L+ITVDCG ++   ++ A   G+DV+V DHH+     +P   +
Sbjct: 121 YGLNPEVLERAAADGVGLVITVDCGVSARREIERAQALGLDVVVTDHHE-PQGLLPPVPV 179

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP R D       L   GV F +   +   L  +   P        L L  L TV DV+
Sbjct: 180 VNPRRPDCNYPFKDLAGVGVAFKLAQAL---LGDELPPP-------FLGLACLGTVADVM 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL G NR  V  GL   +   NPG+ AL      +  +   ++ + I P +NA GRIG  
Sbjct: 230 PLRGENRLLVRHGL--PQLLDNPGIAALGACQGENPVVR--DVAFGIAPLLNAAGRIGRP 285

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            LG  +L++    E   LA +L  LN+ R+ +E  +     A++       +   V+V+ 
Sbjct: 286 ELGVEILLA-GPGEAAALAAQLAALNEERKYLEEKVSAAVLAELSGLP---EVPPVVVLA 341

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ WHPG++G++A+RL  + GRP   I+  +  +G GS R+ EG+++ + +    E  +L
Sbjct: 342 GEDWHPGVIGIVASRLAGRLGRPVALIA-VDGDEGRGSIRAGEGWNLVEALESCRE--VL 398

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH  AAG T+         +   ++A   +P   + P  +I+ ++    +   ++ 
Sbjct: 399 TRFGGHRCAAGFTLPTAAIPGFREAICRYAR-HLPVPASGPELEIEALVTLDQLTPEVLR 457

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +E+  P+GA N  P+ A  + ++     V     HL++  E Q    +  I F +    
Sbjct: 458 EIEALEPWGAQNDPPILAAEDLRVVKHYRVGREGEHLKLVLE-QGRTIISGIGFGLA--- 513

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  +  +R+H+     +N W G +  +++V+D  P
Sbjct: 514 -PAHPEIAECRRVHLAFVPVINRWNGRETPEIKVVDWKP 551


>gi|121606148|ref|YP_983477.1| single-stranded-DNA-specific exonuclease RecJ [Polaromonas
           naphthalenivorans CJ2]
 gi|120595117|gb|ABM38556.1| exonuclease RecJ [Polaromonas naphthalenivorans CJ2]
          Length = 580

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 174/595 (29%), Positives = 263/595 (44%), Gaps = 37/595 (6%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              +         A+ Q   I  ++A++   R V    A   L+  +  L+P P  L   
Sbjct: 2   KIQVRDVPPRSLWALQQA-GIHPLLAQLYAARGVH---AAAELDDGLARLLP-PSSLKGA 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
            +AA  +  A+   + I +  DYD DGA + A+ +R L      N    +PDR+VDGYG 
Sbjct: 57  REAAILLADAMAAGKHICVVADYDCDGATACAVALRGLKLLGATNVGYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA-----Y 192
              + E+    GA +++TVD G  S D +  A   G+ V+V DHH               
Sbjct: 117 TAPIAERVKATGADVLVTVDNGIASIDGVARAKALGLQVLVTDHHLPALFNEKIGLPDAD 176

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATV 250
            +VNPN+         +   GV+F VL+ +   LR+           L +LL LVAL TV
Sbjct: 177 VIVNPNQPGCGFESKSMAGVGVMFYVLLALRAELRERGAFDAAHQPKLDTLLPLVALGTV 236

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAG 308
            DVV L   NR  V +GL   R    P   A         +   T  + G+ +GP INA 
Sbjct: 237 ADVVKLDANNRRLVAQGLKRIRAGALPAGIASLFKAAGRQAPAATTFDFGFALGPRINAA 296

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQ 367
           GR+ +  LG   L++DD    + LA  LD +N+ RR +ES M +QA+       D D + 
Sbjct: 297 GRLADMRLGIECLLTDDPARADELAQMLDGINRERRQIESGMRDQAQLAADAMIDEDEEP 356

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGK 423
              I +    +H G+VG++A+R+K+K  RP+F      +  ++ +  GSGRSI GF +  
Sbjct: 357 PPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQAPGKEHELKGSGRSIPGFHLRD 416

Query: 424 MVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            +        G+L++ GGHAMAAG T+   NF       Q+ A   + A   T   + DG
Sbjct: 417 ALDLVAKRHPGVLLRFGGHAMAAGCTIAEENFEAFEYGLQQVAREWLDAATLTRRLETDG 476

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSET 540
            L        L+D L     +G G   P F     ++ S R+V    HL +  + +  E 
Sbjct: 477 PLAPEYRRADLVDTLHK-EVWGQGFAAPTF-SEEVEVVSQRLVGDDKHLSLKLKHR-GEP 533

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL--DASPVE 593
           +  I F             +   R+ +   L  N W+G +R Q  +   +  P E
Sbjct: 534 VDGIWFGHTD---------ALPARVTLAFRLDTNEWKGIRRVQFLIEAAEIRPQE 579


>gi|169824508|ref|YP_001692119.1| single-strand DNA-specific exonuclease [Finegoldia magna ATCC
           29328]
 gi|167831313|dbj|BAG08229.1| single-strand DNA-specific exonuclease [Finegoldia magna ATCC
           29328]
          Length = 580

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 162/595 (27%), Positives = 277/595 (46%), Gaps = 38/595 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+        N    I++K+ I  ++A++L+NRN++    + FLNP+      +P ++ 
Sbjct: 3   KWLINNRGNNYN---EISKKYNIHPLIAKILLNRNIT--DFEKFLNPNAENSYHNPFLMK 57

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA   I+  I ++EKI I GDYD DG +S   ++  L + +   +  IP+R+ DGYG
Sbjct: 58  DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYFTDKISYDIPNRMTDGYG 117

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191
            + S+++K I +   LIIT D G ++ +   YA   GI +IV DHHQ      K     A
Sbjct: 118 ISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNA 177

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VNP +         LC AGV + ++  I                 +LL  VA+ TVC
Sbjct: 178 DAVVNPQQQSCKYPFKSLCGAGVAYKLIQAINIKKG-----YGMLQCENLLQYVAMGTVC 232

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D+V L   NR +V KGL       N GLK LI    I + +   +LG++IGP INA GR+
Sbjct: 233 DIVDLKDENRYFVTKGLEEINNTDNYGLKCLINMTGIKNAVNVYSLGFIIGPCINAAGRL 292

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             + LG  L   ++   +E  A  L  LN+ R+ +      +A   +  +   ++   ++
Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEII--ENTALKNDDIL 350

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +   +  H  + G++A R+KEK+ +P+  ++         GSGRSI  ++I     F   
Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTESANKNLLKGSGRSISEYNI--FEEFDEF 408

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGH MA GL++E+           K  ++ +          ID       ++ 
Sbjct: 409 REMFVSFGGHPMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILIDSSFYIDKIDF 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546
            LI+ + +  P+G  NP P+    + ++   +++      L+M    ++++ + AI F  
Sbjct: 467 DLIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKL-LKNNKAIDAILFTD 525

Query: 547 ---------RVYGTPLGEFLMQSR--GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      +G  + + L  S      + +  +  +N +   K  QL ++D  
Sbjct: 526 AIEKYTYLLGKFGENVLKELENSISCNAYIDILYYPEINDFNNVKNIQLNLIDLR 580


>gi|326573559|gb|EGE23522.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis 101P30B1]
          Length = 589

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 176/578 (30%), Positives = 265/578 (45%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL T+ D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTIADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL +  +          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIHQGQCVVGILAILEQAGRQYQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA KL+ LNQ RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q    +     +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|326569743|gb|EGE19793.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella
           catarrhalis BC8]
          Length = 589

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 176/578 (30%), Positives = 265/578 (45%), Gaps = 27/578 (4%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
                A+  +      +ARVL  R V        ++  I  L+    ++   D A   I 
Sbjct: 18  EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            AI   E+I+I GD+D DGA S ALM+R L       +  +PDR   GYG  P ++E   
Sbjct: 73  TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132

Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 LIITVD G +S+D +  A   GI V++ DHH       PA A+VNPN+L    G
Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
             +L   GV F V+  + +  RQ      +  +   LDLVAL T+ D+  L   NR  V 
Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTIADLGVLDKNNRILVT 250

Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL +  +          L +       IT+++ G+ I P INA GR+    +G   L++
Sbjct: 251 HGLQLIHQGRCVVGILAILEQAGRQYQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382
           DD  E   LA KL+ LNQ RR +E +M + A A V +    D      IV+  D WH G+
Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370

Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434
           +G++A RLKEK  RPS   +  +           GS RSI G  I  ++         ++
Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAGLT+++ +F R     Q    +     +       DG L     +++ +D
Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553
            L++   +G G   PVF     ++ + R++   HL+++ +    +  + AI F       
Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  R   +H+   L +N W+GS+  QL + D + 
Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581


>gi|291525691|emb|CBK91278.1| exonuclease RecJ [Eubacterium rectale DSM 17629]
          Length = 586

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 170/600 (28%), Positives = 282/600 (47%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +       AI  K  I  + AR++ NR  +  D   +FLN  I  +  DP +L
Sbjct: 3   KWYVSAKRADFA---AIGAKFGIDQVTARIIRNRGVIGDDAVNEFLNGKISDI-ADPALL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +    + Q I +  KI I GDYD+DG  S  ++++ L       +  IPDR+ DGY
Sbjct: 59  KDGQRLVDILAQKIADKAKIRIIGDYDIDGVMSTYILVKALKRAGACVDYMIPDRVKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L++K   +G   ++T D G  + + + +A   G+ V+V DHH V           
Sbjct: 119 GLNVHLIDKAYEDGIDTVVTCDNGIAAIEEIAHAKELGMTVLVTDHHAVPFEDIKGIKIY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +E  A A+VNP++++       LC A V + +++L+YR +  D K       +  ++ VA
Sbjct: 179 KESKADAVVNPHQIECSYPYKELCGAAVAWKIVILLYRKIGIDEKET-----MDFIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
            ATV DV+PL G NR  V  GL       N G+KAL+E  NI    + A + G+++GP +
Sbjct: 234 FATVGDVMPLTGENRILVKAGLKSIHHTTNIGMKALLECCNIEAENVDAYHFGFVLGPCV 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     L + D  ++   +A +L  LN +R+ M +  +E A      + D+ 
Sbjct: 294 NATGRLDTAKRALELFLCDRQEDAMRIASELVALNDDRKEMTAKGVETAVEIY--ERDNY 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+V+     H  I G++A R++EK+ +P+F ++  EDG   GSGRSIE + +    
Sbjct: 352 EKDRVLVIYLPNVHESIAGIIAGRIREKYNKPTFILTKSEDGV-KGSGRSIEEYSMY--E 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +  K GGH MAAGL++ + N         ++A   +      P   ID  +  
Sbjct: 409 EMCKCSELFTKFGGHPMAAGLSLPQENVEPFRQKINEYAS--LTDDDLVPKIHIDVPMPV 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             V++ L+       P+G  NP PVFA  N ++  + VV   +  L+++  S     + A
Sbjct: 467 DYVSMRLVSEFSVLAPFGKDNPKPVFADKNLRVSRMWVVGKNNNVLRLSLISSYGTPINA 526

Query: 544 IAFRVYGTPL--------GEFLMQSRGKRMH-----VTGHLCVNYWRGSKRCQLRVLDAS 590
           I F    +           + L  ++  R +     V     +N +R ++  Q  +    
Sbjct: 527 IYFGDIESFFDYIRQRFGSDALEAAQRGRFNNIVLSVVYSPKINVFRENESLQFEIQYYK 586


>gi|283779935|ref|YP_003370690.1| single-stranded-DNA-specific exonuclease RecJ [Pirellula staleyi
           DSM 6068]
 gi|283438388|gb|ADB16830.1| single-stranded-DNA-specific exonuclease RecJ [Pirellula staleyi
           DSM 6068]
          Length = 590

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 176/587 (29%), Positives = 285/587 (48%), Gaps = 20/587 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW          R   + +   +  I+ ++LV R +   D AK+FL+     L  DP +
Sbjct: 2   RRWRIHAHDAD--RIAYLERTTGLSPIIVQLLVARGIYQPDAAKEFLDAKFGGLR-DPEL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    +AA R+  AI    KI+++GDYD DG    ++++  L     +A+ Y+P+R+ +G
Sbjct: 59  LPGATEAAERLFAAIEAQRKIVVYGDYDADGMTGTSILLGCLKLLRADASYYVPNRLEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + +E    +GAQL+I+VDCG  S    + A   G+++IV DHH+  SE   A   
Sbjct: 119 YGLSNTALESLAAKGAQLVISVDCGIASLSEARRAKELGLELIVTDHHEFASELPEAAVC 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCD 252
           V+P         G LC AGV   V   + +   Q  KV   +   LLS + L A+ TV D
Sbjct: 179 VHPRLPGTAYPFGGLCGAGVALKVAWALCQKASQSKKVTDAMRTYLLSAMGLAAIGTVAD 238

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGR 310
           VVPL+  NR  V  GL   + Q   GL AL+E         +++E++ + I P +NA GR
Sbjct: 239 VVPLVDENRILVRHGLTYLKSQPMIGLGALLELTGLTKKQSLSSEDIAFTIAPRLNAAGR 298

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
            G++ L   LL +D++     LA  +  LN +R  +E ++   A  +   Q +     ++
Sbjct: 299 FGQAQLAVELLTTDNASRAASLAEYIHQLNSSRESLERSIQLAAVKQAKEQFNPDDDPAL 358

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA 428
            V+ G  WH G++GL+A RL EKF RP   I+ ++ G     GS RS+ GF++ + ++  
Sbjct: 359 -VLAGRGWHAGVIGLVAGRLAEKFNRPVVLIALDQLGLKPGTGSARSVAGFNLHEALTA- 416

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                LV  GGHA AAGL +E        + F +FA + +     T   +ID       V
Sbjct: 417 -SGEHLVGYGGHAAAAGLRIEESKVEAFREAFCEFAASQIRPSERTGELRIDAESQLCEV 475

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVV--NLAHLQMTFESQDSETLQAIA 545
           N++ I  +E   P+G GNP P+       L    + +     H+ +  +     T++ + 
Sbjct: 476 NVSTIRQIEQMEPFGCGNPRPLLCASGVTLVEPPKRIGGGERHIAIKLQQA-GVTMRGVG 534

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           F +      + L Q+ G  + +     +N +RG    +L+++D  P 
Sbjct: 535 FGMGDQC--DELAQAVG-PLDIAYRPVINEFRGRVTAELQLVDWRPT 578


>gi|302878865|ref|YP_003847429.1| single-stranded-DNA-specific exonuclease RecJ [Gallionella
           capsiferriformans ES-2]
 gi|302581654|gb|ADL55665.1| single-stranded-DNA-specific exonuclease RecJ [Gallionella
           capsiferriformans ES-2]
          Length = 562

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 166/578 (28%), Positives = 269/578 (46%), Gaps = 24/578 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
                         +T +   P  +A++   R +     K  L+ +   L+     L + 
Sbjct: 3   QITPRDIPAIAFHNLTDE-GYPPAMAKIFAARGI---ENKVQLDATFAHLV-SFEYLKNA 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
              A  +  AI   +K+++  DYD DGA + A+ +R L     + +  +P+R   GYG  
Sbjct: 58  KTMAVMLADAIAARKKLLVIADYDCDGATACAVAVRGLRAFGASIDFIVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P +++        +++TVD G  S D +  A   G+ V V DHH        A  +VNPN
Sbjct: 118 PEIVQLAHESKPDILLTVDNGIASVDGVAAANRLGMQVFVTDHHLPGDMLPDAACIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPL 256
           +        HL   GV+F VL+ +   LR   ++       L  LLDLVAL TV DVV L
Sbjct: 178 QPGCEFPSKHLAGVGVIFYVLLALRAELRNRGQLTEAQGRALPELLDLVALGTVADVVRL 237

Query: 257 IGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
              NR  V +GL+  R  R        L         I + +LG+ +GP +NA GR+ + 
Sbjct: 238 DQNNRILVQQGLLRIRAGRACKGISALLQVSKKSPEKIVSLDLGFTVGPRLNAAGRLDDM 297

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +LG   L++DD      +A +LD LN+ RR +E+ M E A    +    + Q    + + 
Sbjct: 298 SLGINGLLTDDEGVAMGIATQLDTLNRERRSIETDMQEGAL--AVLDTVNPQDNFSLTLF 355

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI- 433
            + WH G++G+LA+RLK+KF RP  A +    G+  GSGRSI G  +   +    +    
Sbjct: 356 DESWHQGVIGILASRLKDKFHRPVIAFAQANSGELKGSGRSIAGLHLRDALDLVSKRSPT 415

Query: 434 -LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
            + K GGHAMAAGL+++  +F      F++ A  ++         + DG L++S + +  
Sbjct: 416 LIKKFGGHAMAAGLSIDAADFDAFVAAFEQVASELLTPNDLLQRIETDGPLDSSGLTLEA 475

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
             +L+    +G G P P F   + ++ + RVV   HL++   + + +++ AI F     P
Sbjct: 476 ARLLDE-QVWGQGFPAPQFD-DDFEVLNQRVVGEKHLKLQLATDEGQSIDAILFGH-NEP 532

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           L EF        +H    L +N ++G++  QL V    
Sbjct: 533 LPEF--------IHAVYSLSINEYKGAQTLQLIVRHWE 562


>gi|154505867|ref|ZP_02042605.1| hypothetical protein RUMGNA_03409 [Ruminococcus gnavus ATCC 29149]
 gi|153793885|gb|EDN76305.1| hypothetical protein RUMGNA_03409 [Ruminococcus gnavus ATCC 29149]
          Length = 570

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 182/584 (31%), Positives = 295/584 (50%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           +W   + +    +   I +K+ I  I+AR++ NR++  D     +LN +I  L  D +++
Sbjct: 3   KWFVSMKKADFTQ---IAEKYHISPIIARLIRNRDILGDQNIDYYLNGTIADLH-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + D A   + + I   EKI + GDYD+DG  +  ++   L       +  IPDR+ DGY
Sbjct: 59  KNMDTAVEILEEKIREGEKIRVIGDYDIDGVNATYILKTGLESLGALVDTDIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L+++ + +G   IIT D G  +   + Y   QG+ +IV DHH+V           
Sbjct: 119 GLNQMLIDRALEDGVDTIITCDNGIAAASEIAYGKAQGMTIIVTDHHEVPYLEAGGEKEY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+VNP+   D      LC A VV+ V+  +Y ++ QD       D+  L++ VA
Sbjct: 179 LIPDADAVVNPHLPGDPYPFKGLCGAAVVYKVVEALYNVMGQD-----ADDVDFLMENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ L+  NR +V +GL + +R  N GLKAL+E   +    ++A ++G++IGP I
Sbjct: 234 IATVGDVMDLVDENRIFVKQGLEMLKRTQNEGLKALMECTQVPIERLSAYHIGFVIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL   + +E  M+A  L  LN +R+ M    +EQA  ++  +  D+
Sbjct: 294 NASGRLDTAKRALELLEVKNRREAVMMAEDLKALNDSRKEMTEKGVEQAVEQI--ETTDL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+VV     H  I G++A RLKEK+ +P F ++  E G   GSGRSIE + +    
Sbjct: 352 KEDRVLVVYLQDCHESIAGIIAGRLKEKYYKPVFVLTQGEHGV-KGSGRSIESYHM--FE 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +  K GGH +AAGL++E  N  R      +     + +    P   ID  L  
Sbjct: 409 EMCKCRALFTKFGGHKLAAGLSLEEENVERFRRTINELCE--LTSQDLMPKVSIDMQLPL 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           + V   LI+ LE   P+G GN  P+FA  N K+Q++RV+      L+     ++   ++A
Sbjct: 467 AYVTEELIEELELLEPFGKGNTKPLFAEKNLKVQNLRVIGKNQNVLKFQVLDRNGRKMEA 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           I F      +         + + +T +  VN +RG+K  Q+ V+
Sbjct: 527 IYFGEVQECMEYL---QGKEEVALTFYPSVNEYRGNKSIQITVV 567


>gi|289550599|ref|YP_003471503.1| Single-stranded-DNA-specific exonuclease recJ [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180131|gb|ADC87376.1| Single-stranded-DNA-specific exonuclease recJ [Staphylococcus
           lugdunensis HKU09-01]
          Length = 758

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/591 (27%), Positives = 288/591 (48%), Gaps = 29/591 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W      + I+    I +K+ +  I+ +VL ++++ +    +  LN      + +P
Sbjct: 4   SKYTWNHNEPTQYID--EQIAKKYKLSPIIKKVLESKHIVNEKDIEGLLNGQ--QQLHEP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D  KA  RI  AI   E+I+I+GDYD DG  S  +M++ L         YIP+R  
Sbjct: 60  WLLSDMTKAIERINLAIDKHERILIYGDYDADGVTSTTIMVKTLQSLGAEVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   Y  ++     G+DVIV DHH++ S    A+
Sbjct: 120 EGYGPNELAFKNAYDEGVSLIITVDNGIQGYREIEMIQELGVDVIVTDHHEMGSTLPDAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + V   + +     N VP        + L ++ T+ D
Sbjct: 180 AIVHPMHPEFDYPCPNLCGAGVAYKVSQALLK-----NNVPPY-----YIALASIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR  V  GL +        + AL+   N + PI  E +G++IGP +NA GR+ 
Sbjct: 230 LVSLTDENRTIVKTGLSILNDYQPIQIAALLNEANYNDPIDEETIGFIIGPRLNAVGRLE 289

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+++D++E   LA +++  N  R+ + S + E+A      +    +    ++
Sbjct: 290 DASLAAELLMTEDAEEAAFLAEQVNHFNNERKDIVSKITEEALLLAKEEVA--KGRQFLL 347

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+R+ E +G P+  ++  +E     GS RSIE   +      +  +
Sbjct: 348 LAKENWHEGVLGIVASRIVETYGLPTLILNIDDEQHYAKGSARSIEQVSM--FEILSDHQ 405

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T+   N   L +    +  N+          +ID  +    + + 
Sbjct: 406 NLISKFGGHHMAAGMTMPIENISELREGLNAWMANLAQTTSFDQKKQIDVKITEDEITVN 465

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  +E   P+G     P+F   +  + S++ +     HL+MT  + +  TL    +   
Sbjct: 466 NIYDIERLKPFGIDFNKPLFELDDVNVNSLKAIGKDKNHLKMTIGNSNLATL---YWNS- 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           G+ + E  +    + +++ G L +N W G++  Q  + D +  +      +
Sbjct: 522 GSLVDELELN---QPINMIGQLQINEWNGNQSPQFIIQDIAINQQQILDYR 569


>gi|325846694|ref|ZP_08169609.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481452|gb|EGC84493.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 576

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/590 (28%), Positives = 285/590 (48%), Gaps = 32/590 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           +W     +      L   +   I  + A +L NR++      + F+NPS+  L  DP +L
Sbjct: 3   KWYIYNKKNNYLSNL---KNENITKLEALILANRDIVEPNVIESFINPSLEKLH-DPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +A   I++ + N + I IFGDYD DG +S   ++  L +   + +  IPDR++DGY
Sbjct: 59  NDMKEAIDLIIETMENGQSIRIFGDYDQDGISSTMTLLDGLLYFYDDISYDIPDRVIDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH---------QVKS 186
           G +  ++++ I     L+I+ D G T+ D ++     GI VI+ DHH          +K 
Sbjct: 119 GISDRMIDRAIEAKVSLVISCDNGITAIDQVKKLKENGIRVIITDHHQVIKESNGEWIKQ 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A  ++NP RLD+      LC AGV F ++  +Y+ L  D        L  LL+ VA
Sbjct: 179 ILPDADCVINPKRLDNTYPFDDLCGAGVSFKLMQALYQRLEGD-----RDYLYGLLEYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCDVV L   NR +V +GL          +KALIE  + +  + A  LG++IGP +N
Sbjct: 234 MGTVCDVVSLTDENRIFVREGLKRINNTEKLAIKALIEENSWNKEVNAYTLGFVIGPCMN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  + L   +L+ +D  ++   A KL  LN  R+ + S  LE++   +  +     
Sbjct: 294 ATGRLSTAKLAIDMLMEEDIDKIHSYAKKLVSLNNERKDLTSIGLEKSMEIIKDK--KYY 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMV 425
           +  +I+V+ D     I G++A R+KEKF +P+  ++     G   GSGRSIE ++I   +
Sbjct: 352 KDDIIIVDVDNIEESICGIIAGRIKEKFNKPTIIMTGSNQEGILKGSGRSIEAYNIYTEI 411

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + IL   GGH MA GL++++               + +       +  ID  +  
Sbjct: 412 FE--IKDILESFGGHPMACGLSIKKDRVDEFRKKLND--KSKLTKDDFEEIINIDAQIPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             +++   + L    P+G  NP   FA  N ++++I ++   +  L+MT  +++   L+A
Sbjct: 468 DKLSLEFAESLNRLEPFGKDNPKARFADKNLEIKAINMIGKNNNTLKMTL-NKNGRDLEA 526

Query: 544 IAFRVYGTPL---GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F           +F     G ++    +  VN +RG K  Q++++D  
Sbjct: 527 IKFNAVKDYNYLSDKFNTNIVGNKIDAVFYPDVNEFRGQKNLQIKLIDIR 576


>gi|156564062|ref|YP_001429805.1| RecJ [Bacillus phage 0305phi8-36]
 gi|154622759|gb|ABS83639.1| ssDNA exonuclease [Bacillus phage 0305phi8-36]
          Length = 577

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 159/573 (27%), Positives = 259/573 (45%), Gaps = 36/573 (6%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
            D++  +L  R +  +  ++FL  + + L  +P  + D  KA  RI++A+   E I IFG
Sbjct: 17  DDLIYDILEARGI--EDVEEFLRITKKKLH-NPYKMRDMKKAVTRIIEAVQKKETIGIFG 73

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYD DGA+S A+ +  L    ++   ++PDR  DGYG N   ++ F + G  L+IT D G
Sbjct: 74  DYDADGASSTAIWVLILRELGLDVMYFVPDRFKDGYGVNQRGLDLFADNGVDLVITCDTG 133

Query: 160 STSYDALQYATNQGIDVIVIDHHQV-----------------KSEEIPAYALVNPNRLDD 202
            T+   + YA N+G+D+I+ DHH+                      IP   +VNP R D 
Sbjct: 134 ITAIQQVAYAKNKGMDIIITDHHEPQESSAYKDDVQKVGQHIGDYLIPDTIVVNPKRPDC 193

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
                 L   GV F +L  +   +    +          +D+VAL T  D++ +I  NR 
Sbjct: 194 KYPFKGLAGVGVSFKILCAVCDKIHPAGRAGA----YQYMDIVALGTFADMMDIIDENRV 249

Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322
               G+ +  R+ N GL  L     +   IT++++G+ I P INA GRI  +     +LI
Sbjct: 250 IGKLGIDMMNRKPNRGLYQLFRANELKQ-ITSQDIGWTIAPCINAAGRIVSAEEAVDMLI 308

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
           S +       A KL  +N+ R+ +    +      V     D    ++IV        GI
Sbjct: 309 STNKLAAYRCAKKLVEINKERKELTKTYVGNIIKSVEADQID-NPTNIIVHYYPGIPEGI 367

Query: 383 VGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           VGL+A+RL   F +PS  ++  +E G   GSGRSI GFD+    S   +  ++   GGHA
Sbjct: 368 VGLIASRLMNHFYKPSIIMTDADEPGLYKGSGRSITGFDL--FTSLMRQTDVMEGFGGHA 425

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
           MA GL+V    F  L    +  A  ++  +   P   +D ++  + +++  +D +    P
Sbjct: 426 MACGLSVTNDKFQELKTRMEFLADTMISEIDLQPKVYVDAIVKGNIIDLDFVDEMNKMEP 485

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           +G G+  P F     ++     V     HL     S   +T   I F +Y     ++   
Sbjct: 486 FGRGHAQPSFMMEKMRVIREMPVGDEKNHL-WALMSDGKKTFSTIGFFLYE----KYEAL 540

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            + K + +      N ++G    QL++ D    
Sbjct: 541 GKPKNIDIVFVPDRNEYKGKVDVQLKIKDLRKA 573


>gi|296111868|ref|YP_003622250.1| Single-stranded DNA-specific exonuclease, 5'-3' [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833400|gb|ADG41281.1| Single-stranded DNA-specific exonuclease, 5'-3' [Leuconostoc
           kimchii IMSNU 11154]
          Length = 654

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 179/586 (30%), Positives = 283/586 (48%), Gaps = 28/586 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72
           S   W  L           +  +  I  I A ++  +  +    A  +L PSI  L  DP
Sbjct: 2   SQKNWQILSKPPEKV-VRQLQTQLNIDQIAATIVAQKGYTTPETAFQYLQPSIEQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           + L D DK   R+ +A +  EKI+++GDYD+DG  S A+M+  L     +   YIP+R +
Sbjct: 60  MQLHDMDKTFERLTEAAFGGEKIVVYGDYDLDGVTSTAIMVEALEVLGADVTAYIPNRFL 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN    ++ I+ GAQ+I+TVD G + ++A+ YA  QG+DVI+ DHH++      A+
Sbjct: 120 DGYGPNIDAYKRLIDAGAQVIVTVDNGVSGHEAVAYAMAQGVDVIITDHHEIGPTLPEAF 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL-LSLLDLVALATVC 251
           A+V+P   D       L   GV F V   +   L     V    DL   +LDLVAL  + 
Sbjct: 180 AIVHPRHPDGHYPFDDLSGVGVAFKVAQAL---LTDGQPVTDKSDLPTEMLDLVALGEIA 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGG 309
           D+V L   NR  V  GL        PGL AL++      + PI +E + + I P +NA G
Sbjct: 237 DMVSLTDENRTLVSWGLKQINDSPRPGLSALLKNAGQASNQPIISETVSFKIAPRLNAVG 296

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G+++L   LL+S D+     +A +++ +N  R+ +   +   A+   L++  +     
Sbjct: 297 RLGDASLALDLLLSQDADTATDMASQIEAINAERQEIVEEVFGAAKQIALSE--EHINDQ 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+VV G  WH GI+G++A+RL E   +P   +S    G   GSGRS   FD+  ++    
Sbjct: 355 VLVVAGQDWHQGILGIVASRLVELLHKPVIVLSLV-SGSYKGSGRSYGNFDLYTLMG--N 411

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +    GGHA A GL +   N  RL D       ++    +T     ++ +L    + 
Sbjct: 412 YRELYDTFGGHASALGLAISETNLARLRDQ----LADLPALELTQQAVDVNMMLTTQELT 467

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
             + D L    P+G GN  P+F   N K++    +     H+++T  +Q    ++A+ F 
Sbjct: 468 TTVYDALTLLEPFGTGNRQPIFEIQNPKIEKAITMGSTKQHIKLTLPNQ----IEAVGFN 523

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                     +  + K +     L +NY+RG KR QL + D +  E
Sbjct: 524 HPDW----TGIVVKPKNVSFVATLGINYFRGMKRLQLLLTDVAIPE 565


>gi|303233632|ref|ZP_07320286.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna
           BVS033A4]
 gi|302495066|gb|EFL54818.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna
           BVS033A4]
          Length = 580

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 162/595 (27%), Positives = 277/595 (46%), Gaps = 38/595 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+        N     ++K+ I  ++A++L+NRN++    + FLNP+      +P ++ 
Sbjct: 3   KWLINNRGNNYNEV---SKKYNIHPLIAKILLNRNIT--DFEKFLNPNAENSYHNPFLMK 57

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA   I+  I ++EKI I GDYD DG +S   ++  L + +   +  IP+R+ DGYG
Sbjct: 58  DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYFTDKISYDIPNRMTDGYG 117

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191
            + S+++K I +   LIIT D G ++ +   YA   GI +IV DHHQ      K     A
Sbjct: 118 ISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNA 177

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VNP +         LC AGV + ++  I                 +LL  VA+ TVC
Sbjct: 178 DAVVNPQQQSCKYPFKSLCGAGVAYKLIQAINIKKG-----YGMLQCENLLQYVAMGTVC 232

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D+V L   NR +V KGL       N GLK LI    I + +   +LG++IGP INA GR+
Sbjct: 233 DIVDLKDENRYFVTKGLEEINNTDNYGLKWLINMTGIKNAVDVYSLGFIIGPCINAAGRL 292

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             + LG  L   ++   +E  A  L  LN+ R+ +      +A   +  +   ++   ++
Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEII--ENTALKNDDIL 350

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430
           +   +  H  + G++A R+KEK+ +P+  ++  E+     GSGRSI  +DI     F   
Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTESENKNLLKGSGRSISEYDI--FQEFDDF 408

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGH MA GL++E+           K  ++ +          ID       ++ 
Sbjct: 409 REMFVSFGGHPMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILIDSSFYIDKIDF 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546
            LI+ + +  P+G  NP P+    + ++   +++      L+M    ++++ + AI F  
Sbjct: 467 ELIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKL-LKNNKAIDAILFTD 525

Query: 547 -----RVYGTPLGEFLMQSR------GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       GE +++           + +  +  +N +   K  QL ++D  
Sbjct: 526 AIEKYNYLLGKFGENVLKELENSISCKAYIDILYYPEINDFNNVKNIQLNLIDLR 580


>gi|254523074|ref|ZP_05135129.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas sp.
           SKA14]
 gi|219720665|gb|EED39190.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas sp.
           SKA14]
          Length = 587

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 172/560 (30%), Positives = 276/560 (49%), Gaps = 24/560 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++AR+  +R            P +  L   P +LT  D A   + +AI N ++I++ GD
Sbjct: 36  PLLARLYASRGAGTPELAQ---PKLGNLHA-PELLTGIDDAVGLLAEAIANDKRILVVGD 91

Query: 101 YDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L         + +P+R+V GYG +PSL+++       L++TVD G
Sbjct: 92  FDCDGATACAVGVRGLRMLGAQHVFHAVPNRMVHGYGLSPSLVDELAALQPDLLVTVDHG 151

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH    +  PA  +V+PN   D      L   GV+F VL
Sbjct: 152 IACHAGVTAAKARGWQVLVTDHHLPGPQLPPADVIVDPNLDGDAFPSKSLAGVGVIFYVL 211

Query: 220 VLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + R +R+          DL +LLDLVA+ TV D+V L   NRA V  GL   R  QG 
Sbjct: 212 MALRRRMREAGVFADGKGPDLTTLLDLVAVGTVADLVALDPNNRALVSAGLRRLRAGQGC 271

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALIE      + +TA ++G+ +GP +NA GR+ +  LG  LL+++D ++   +A  
Sbjct: 272 VGLRALIEASGRDAARLTATDIGFALGPRLNAAGRLEDMALGIALLLTEDPRQARDIAQT 331

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++ +M + AE  +     D+  Q+     +    WHPG+VGL+A+++K++
Sbjct: 332 LEQINSERRAVQQSMTDDAEQALTRVVLDMAGQRPVAACLFDADWHPGVVGLVASKMKDR 391

Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A +  E G     GS RSI G  I   ++   A   G++ + GGHAMAAGL++ 
Sbjct: 392 LHRPVIAFAPAEPGADTLRGSARSIPGLHIRDALALVDARHPGLIERFGGHAMAAGLSLR 451

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             +       F      ++           DG L A  ++    D L  AGP+G G P P
Sbjct: 452 LDHVDDFKAAFVAVVLEMLDPAALQQQVLSDGELAADELDHRHADALRLAGPWGQGFPEP 511

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F   + ++ + RV+   HL++         T+ AI F  +          +  + +H+ 
Sbjct: 512 LFDG-HFEVANWRVLKERHLKLELRLPGVPGTINAIHFGGWHG-------NAPARHVHLA 563

Query: 569 GHLCVNYWRGSKRCQLRVLD 588
             L  + +RG    QL V  
Sbjct: 564 YRLACDDYRGGSAIQLIVEH 583


>gi|194365594|ref|YP_002028204.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas
           maltophilia R551-3]
 gi|194348398|gb|ACF51521.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas
           maltophilia R551-3]
          Length = 585

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 175/564 (31%), Positives = 278/564 (49%), Gaps = 24/564 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++AR+  +R            P +  L   P +LT  + A   +V+AI N ++I++ GD
Sbjct: 34  PLLARLYASRGAGTPELAL---PKLGSLHA-PELLTGIEAAVGLLVEAIANDKRILVVGD 89

Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L           +P+R+V GYG +PSL+E+       L++TVD G
Sbjct: 90  FDCDGATACAVGVRGLRMLGAQHVLHAVPNRMVHGYGLSPSLVEELAELQPDLLVTVDHG 149

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH    +  PA  +V+PN   D      L   GV+F VL
Sbjct: 150 IACHAGVTAAKARGWQVLVTDHHLPGPQLPPADVIVDPNLDGDAFPSKSLAGVGVIFYVL 209

Query: 220 VLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + R +R+          DL +LLDLVA+ TV D+V L   NRA V  GL   R  QG 
Sbjct: 210 MALRRQMREAGVFADGKGPDLTTLLDLVAVGTVADLVALDPNNRALVSAGLRRLRAGQGC 269

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALIE      + +TA ++G+ +GP +NA GR+ +  LG  LL+++D ++   +A  
Sbjct: 270 VGLRALIEASGRDAARLTATDIGFALGPRLNAAGRLEDMALGIALLLTEDPRQAREIAQT 329

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++ +M + AE  +     D+  Q+     +    WHPG+VGL+A+++K++
Sbjct: 330 LEQINSERRAVQQSMTDDAEQALTRVVLDMAGQRPVAACLFDADWHPGVVGLVASKMKDR 389

Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A +  E G     GS RSI G  I   ++   A   G++ + GGHAMAAGL++ 
Sbjct: 390 LHRPVIAFAPAEPGADTLRGSARSIPGLHIRDALALVDARHPGLIERFGGHAMAAGLSMR 449

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             +       F      ++           DG L A  ++    D L  AGP+G G P P
Sbjct: 450 LDHLDDFKAAFVAVVLEMLDPAALQQQVLSDGELAADELDHRHADALRLAGPWGQGFPEP 509

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F   + ++ + RV+   HL++         T+ AI F  +          + G+ +H+ 
Sbjct: 510 LFDG-HFEVANWRVLKERHLKLELRLPGVPGTINAIHFGGWHG-------NAPGRHVHLA 561

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  + +RG    QL V    P 
Sbjct: 562 FRLACDDYRGGSAIQLIVEHCLPA 585


>gi|212696223|ref|ZP_03304351.1| hypothetical protein ANHYDRO_00759 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676852|gb|EEB36459.1| hypothetical protein ANHYDRO_00759 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 576

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 170/590 (28%), Positives = 286/590 (48%), Gaps = 32/590 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLIL 75
           +W     +      L   +   I  + A +L NR++        F+NPS+  L  DP +L
Sbjct: 3   KWYIYNKKNNYLSNL---KNKNITKLEALILANRDIVEPNVVDSFINPSLEKLH-DPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +A   I++ + N + I IFGDYD DG +S   ++  L +   + +  IPDR++DGY
Sbjct: 59  NDMKEAIDLIIETMENGQSIRIFGDYDQDGISSTMTLLDGLLYFYDDISYDIPDRVIDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH---------QVKS 186
           G +  ++++ I     L+I+ D G T+ D ++     GI VI+ DHH          +K 
Sbjct: 119 GISDRMIDRAIEAKVSLVISCDNGITAIDQVKKLKENGIRVIITDHHQVIKESNGEWIKQ 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A  ++NP RLD+      LC AGV F ++  +Y+ L  D        L  LL+ VA
Sbjct: 179 ILPDADCVINPKRLDNTYPFDDLCGAGVSFKLMQALYQRLEGD-----RDYLYGLLEYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCDVV L   NR +V +GL          +KALIE  + +  + A  LG++IGP +N
Sbjct: 234 MGTVCDVVSLTDENRIFVREGLKRINNTDKLAIKALIEENSWNKEVDAYTLGFVIGPCMN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  + L   +L+ +D  ++   A KL  LN  R+ + S  LE++   +  +     
Sbjct: 294 ATGRLSTAKLAIDMLMEEDIDKIHSYAKKLVSLNNERKDLTSIGLEKSMEIIKEK--KYY 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMV 425
           +  +I+V+ D     I G++A R+KEKF +P+  ++     G   GSGRSIE ++I   +
Sbjct: 352 KDDIIIVDVDNIEESICGIIAGRIKEKFNKPTIIMTGSSQEGILKGSGRSIEAYNIYTEI 411

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +L   GGH MA GL++++               + +       +  ID  +  
Sbjct: 412 FE--IKDMLESFGGHPMACGLSIKQDRVDEFRKKLND--KSKLTKDDFEEIINIDAQIPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             +++   + L    P+G  NP   FA  N ++++I ++   +  L+MT  +++   L+A
Sbjct: 468 DKLSLEFAESLNRLEPFGKDNPKAKFADKNLEIKAINMIGKNNNTLKMTL-NKNGRDLEA 526

Query: 544 IAFRV---YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F     Y   L +F     G ++    +  VN +RG K  Q++++D  
Sbjct: 527 IKFNAVKDYNYLLDKFNSHIVGNKIDAVFYPDVNEFRGQKNLQIKLIDIR 576


>gi|302380526|ref|ZP_07268991.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311469|gb|EFK93485.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna
           ACS-171-V-Col3]
          Length = 580

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 278/595 (46%), Gaps = 38/595 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+        N     ++K+ I  ++A++L+NRN++    + FLNP+      +P ++ 
Sbjct: 3   KWLINNRGNNYNEV---SKKYNIHPLIAKILLNRNIT--DFEKFLNPNAENSYHNPFLMK 57

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA   I+  I ++EKI I GDYD DG +S   ++  L + +   +  IP+R+ DGYG
Sbjct: 58  DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYFTDKISYDIPNRMTDGYG 117

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191
            + S+++K I +   LIIT D G ++ +   YA   GI +IV DHHQ      K     A
Sbjct: 118 ISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNA 177

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VNP +         LC AGV + ++  I              +  +LL  VA+ TVC
Sbjct: 178 DAVVNPQQQSCKYPFKSLCGAGVAYKLIQAINIKKG-----YGMLECENLLQYVAMGTVC 232

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D+V L   NR +V KGL       N GLK LI    I + I   +LG++IGP INA GR+
Sbjct: 233 DIVDLKDENRYFVTKGLEEINNTDNYGLKCLINMTGIKNSINVYSLGFIIGPCINAAGRL 292

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             + LG  L   ++   +E  A  L  LN+ R+ +      +A   +  +   ++   ++
Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEII--ENTALKNDDIL 350

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430
           +   +  H  + G++A R+KEK+ +P+  ++  E+     GSGRSI  +DI     F   
Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTESENKNLLKGSGRSISEYDI--FEEFDEF 408

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGH MA GL++E+           K  ++ +          ID       ++ 
Sbjct: 409 RDMFVSFGGHPMACGLSIEKNKLDEFRTKINK--NSKLTEDDFVKKILIDSSFYIDKIDF 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546
            LI+ + +  P+G  NP P+    + ++   +++      L+M    ++++ + AI F  
Sbjct: 467 ELIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKL-LKNNKAIDAILFTD 525

Query: 547 -----RVYGTPLGEFLMQSR------GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                       GE +++           + +  +  +N +   K  QL ++D  
Sbjct: 526 AIEKYNYLLGKFGENVLKELENSISCKAYIDILYYPEINDFNNVKNIQLNLIDLR 580


>gi|134095410|ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas arsenicoxydans]
 gi|133739313|emb|CAL62362.1| Single-stranded-DNA-specific exonuclease RecJ [Herminiimonas
           arsenicoxydans]
          Length = 564

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/581 (29%), Positives = 267/581 (45%), Gaps = 26/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
                      A  + Q   +  ++AR+   R +        L   +  L+P P +L   
Sbjct: 3   RITTRPYPFRDAERMRQS-GVHPVMARLYTARGLLD---LKELTSELSALIPPPGLLH-I 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           D AA  +  AI + +K++I  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  DVAAVFLADAIADKKKLVIVADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLT 117

Query: 139 PSLME-KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           P ++      +   +I+TVD G  S D +  A  +GIDV+V DHH        A  +VNP
Sbjct: 118 PEIVALAVREKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNP 177

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255
           N+ D      +L   GV+F VL+ +   +R+           L +LLDLVAL TV DVV 
Sbjct: 178 NQPDCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVK 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R  + + G+ AL           +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDANNRILVAQGLKRMRAGRMHAGIAALFRAAGREARSASPFDLGFALGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   L +DD      +A +LD +N+ RR +E+ M + A   +     D Q ++ I +
Sbjct: 298 MSLGIECLTTDDEGRAWAIAQQLDEINRERRTIEADMQDTALLLLDK--FDPQDSTTISI 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RLK+KF RP+   +   DG   GSGRSI GF +   +    +   
Sbjct: 356 FDPSWHQGVIGIVASRLKDKFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAP 415

Query: 434 --LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             + K GGHAMAAGLT+   +       F+    + +       V + DG L  +     
Sbjct: 416 TLIDKFGGHAMAAGLTIRADSLDSFTQAFEAVGKDWLSRNQLERVIETDGPLEPAYFTTQ 475

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
            I+++     +G G   P+F     ++ + R++   HL++T E +D +   AI F     
Sbjct: 476 FIELMAE-QVWGQGFAPPLFCDE-FRVVNQRILKERHLKLTLE-KDGQQFDAIWFGHID- 531

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                   S      V   L  N + G  R QL V  A  V
Sbjct: 532 --------SLPATARVAYRLDANEFNGRTRVQLLVEHAEAV 564


>gi|260223260|emb|CBA33644.1| Single-stranded-DNA-specific exonuclease recJ [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 604

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 176/585 (30%), Positives = 269/585 (45%), Gaps = 29/585 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+ ++  +  ++AR+   R V+    KD L+ ++  L+P P  L   
Sbjct: 37  KIVPRDIPPRAAWAL-EQAGLHPLLARLYAARGVTG---KDELDDALGKLLP-PQGLLGA 91

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
           D+AA  +  AI   +K+ +  DYD DGA + A+ +R L      + +  +PDR+VDGYG 
Sbjct: 92  DRAAVLLADAIAQDKKLCVVADYDCDGATACAVAVRGLRLLGARHVDYLVPDRVVDGYGL 151

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
              + E+    GA ++ITVD G  S D +  A   G+ V+V DHH   SE   A  +VNP
Sbjct: 152 TAPISERVKKSGADVLITVDNGIASVDGVARAKALGLQVLVTDHHLPGSELPDADVIVNP 211

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F  L+ +   LR            L +LL LVAL TV DVV 
Sbjct: 212 NQPGCTFESKSMAGVGVMFYTLLALRSELRNRVVFDAATQPKLDTLLPLVALGTVADVVK 271

Query: 256 LIGLNRAYVVKGLMVARRQGNPG--LKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R    P       I     +   T  + G+ +GP INA GR+ +
Sbjct: 272 LDANNRRLVAQGLKRVRALAMPAGLASLFIAAGRKAEVATTFDFGFALGPRINAAGRLSD 331

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372
             LG   L++DD+   + LA  LD +N+ RR +E  M EQA     +  D+  +    I 
Sbjct: 332 MTLGIECLLTDDAGRGDELAKMLDGINRERREIEGDMREQAMMIAESLFDEGDEPPPAIC 391

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           V    +H G+VG++A+R+K+K  RP+F      +  ++ +  GSGRSI GF +   +   
Sbjct: 392 VFDPDFHEGVVGIVASRIKDKLHRPTFVFAASAAEGKEHELKGSGRSIPGFHLRDALDLV 451

Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                G++++ GGHAMAAG TV    F    +   + A   + A   T   + DG L A 
Sbjct: 452 AKRHPGVILRFGGHAMAAGCTVAEEFFDDFENGMNEVAQEWLDAATLTRRMETDGPLAAE 511

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
              + L+D L     +G G   P F     ++ S R+V   HL +  + Q  E +  I F
Sbjct: 512 YRRVDLVDALHK-EVWGQGFAAPTF-SEEVEVVSQRLVGEKHLALKLKHQ-GEPVDGIWF 568

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                            ++ +   L  + W G +R +  V  A  
Sbjct: 569 GHTE---------PLPPKVTLAFRLDADEWNGVRRVRFLVEGAQV 604


>gi|91776417|ref|YP_546173.1| exonuclease RecJ [Methylobacillus flagellatus KT]
 gi|91710404|gb|ABE50332.1| exonuclease RecJ [Methylobacillus flagellatus KT]
          Length = 564

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 179/573 (31%), Positives = 274/573 (47%), Gaps = 25/573 (4%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
                   A+     +   +AR+L  R +        +  S+  L+P P  LT   + A 
Sbjct: 8   NIDQEACQALV-DAGVRPTMARLLAARGIRN---IGQMEASLSRLIP-PERLTGNAEMAI 62

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
            +  AI   ++I++ GDYD DGA + A+ ++ L       +  +P+R   GYG  P ++ 
Sbjct: 63  LLADAIAAGKRIIVVGDYDADGATATAVAVKGLLSMGAVVDFLVPNRFEYGYGLTPEIVA 122

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
             +     LI+TVD G  S D +  A   GI V+V DHH   +E   A  +VNPN+    
Sbjct: 123 LAVGYQPDLILTVDNGIASTDGVNAAQALGIPVLVTDHHLPGAETPRAACIVNPNQHGCD 182

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNR 261
               HL   GV+F VL+ +   LR+          +L  LLDLVAL TV D+V L   NR
Sbjct: 183 FPSKHLAGVGVIFYVLLALRAELRRRGAFAAGSEPNLTELLDLVALGTVADLVRLDDNNR 242

Query: 262 AYVVKGLMVARRQGN-PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
             V +GL   R     PG+ AL E         + ++LG+ IGP +NA GR+ +  LG  
Sbjct: 243 ILVEQGLRRIRAGKCSPGVLALFEVAGRDHAKASPQDLGFSIGPRLNAAGRLDDMTLGIA 302

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
            L++ D      +A  L  LNQ RR +E+ M + A A +     D      + +  D WH
Sbjct: 303 CLLAPDMASARQMAQHLHALNQERRNIEADMQDDALAVLDE--IDAAGRYSLSLFRDGWH 360

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKG 437
            G++G+LA+R+KE+F RP  A +   DG   GSGRSI G  +   +      E G+L+K 
Sbjct: 361 QGVIGILASRIKERFHRPVIAFASAGDGIIKGSGRSIAGLHLRDALDLLSKREPGLLLKF 420

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHAMAAGL++   +F R    F++    ++       V ++DG L+     + + + LE
Sbjct: 421 GGHAMAAGLSIREQDFPRFDAAFEQVVSGLLTQQQLEAVIEVDGSLSLEDAGLDMANALE 480

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
               +G G P P+F     ++ + RVV   HL+++ E +  +   AI FR          
Sbjct: 481 R-QVWGQGFPPPLFLDE-FRVVNQRVVGERHLKLSLE-RAGQVFDAIFFRQ--------- 528

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            Q   +R+H    + VN +RG++  QL +    
Sbjct: 529 EQFLPERVHAVYQMQVNEFRGTQSVQLCLHHWQ 561


>gi|314933800|ref|ZP_07841165.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           caprae C87]
 gi|313653950|gb|EFS17707.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           caprae C87]
          Length = 757

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 163/591 (27%), Positives = 288/591 (48%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72
           S + W      E I     + +K  +  IV +VL ++N V  +   D L   +  L  DP
Sbjct: 4   SRYHWDLAQPTEYITD--DLAKKLNLSPIVKKVLESKNLVQENNILDVLEDKV--LDHDP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  WLLSDMQKAIDRINLAIDKNERILVYGDYDADGVTSTTILVNTLQQLGAQVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN        +EG  LIITVD G   +D ++   + G+DVIV DHH++      A 
Sbjct: 120 EGYGPNELAFRNAYDEGISLIITVDNGIQGHDEIKMVQDLGVDVIVTDHHEIGRTLPEAL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D      +LC AGV + +   +     Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPDFDYPFKYLCGAGVAYKLSQALLSHPPQ-----------QFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR+ V +GL +   Q    + A++++   +  I  E +G++IGP +N  GR+ 
Sbjct: 229 LVSLTDENRSIVKRGLKILNDQTPVSINAILKQAGYNDQINEETIGFIIGPRLNVVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+ D+ +E E LA +++  NQ R+ + + + E+A +    Q    Q    ++
Sbjct: 289 DASLAAELLMVDEFEEAEFLAEQVEHFNQERKDIVAEITEEALSLAEEQV--QQGNLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ + E     GS RSIE   +         +
Sbjct: 347 LAKENWHEGVLGIVASKIVETYALPTLVLNIDLEQNHAKGSARSIEQVSM--FEILNAHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T++  N   L     ++   +  +    P   +D +LN S + + 
Sbjct: 405 DLITKFGGHHMAAGMTMDIENIDELRKGLNEWMKQLSESTSLAPRKHVDVLLNESEITVK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  ++   P+G    +P+F   +  ++SI+ +     HL++         L A+ +  Y
Sbjct: 465 NIQDIQKLRPFGTDFNSPIFEVNDLNVKSIKAIGQEGKHLKVAL---GENQLAALYW-SY 520

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           G    E  M   G+ +++ G+L +N W G++  QL + D +         +
Sbjct: 521 GHLAKEIEM---GQPLNLIGNLQINEWNGNQSPQLIIQDIATETIQILDYR 568


>gi|319947208|ref|ZP_08021442.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           australis ATCC 700641]
 gi|319747256|gb|EFV99515.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           australis ATCC 700641]
          Length = 746

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/593 (29%), Positives = 280/593 (47%), Gaps = 34/593 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W         +  LA  +K  +    A++L  R +  + A   FL P +  L  DP
Sbjct: 12  SKYEWQFAAPFSD-DTFLAQAKKRGLEASAAKLLGERGIQTEEALDRFLEPRLEDLH-DP 69

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI + E+I+++GDYD DG  + ++M   L        +Y+P+R  
Sbjct: 70  YLLHDMDKAVDRIRQAIEDYEQILVYGDYDADGMTAASIMKETLEQMGAEVAVYLPNRFT 129

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A+  A + G+DVIV DHH +      A
Sbjct: 130 DGYGPNASVYKYFIEQQGISLIITVDNGVAGHEAIDLAQSMGVDVIVTDHHAMPEVLPDA 189

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+++P   +      HL   GV F +   +   +            L  LDLVA+ T+ 
Sbjct: 190 YAVIHPEHPNADYPFKHLAGCGVAFKLATALLEEVP-----------LDFLDLVAIGTIA 238

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGR 310
           D+V L   NR  V  GL V R+    GL+ +++  +I    +  E +G+ I P +NA GR
Sbjct: 239 DMVSLTDENRILVKYGLGVLRQTQRIGLQEMLKLASIAPQDVNEETVGFQIAPRLNALGR 298

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +E   +A+ +   N+ R+ +  ++ ++A+A V           V
Sbjct: 299 LDDPNPAVELLTGFDDEEALEIALMIQAKNEERKEIVQSIYDEAKAMV------DPSLPV 352

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            ++  + W+PG++G++A RL E+  +P   ++  + GK  GS RS E   I    +    
Sbjct: 353 QILAKEGWNPGVLGIVAGRLLEELHQPIIVLT-IDQGKAKGSARSPESVHI--FEALDPH 409

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + +  GGHA AAG+T+E      L + F  +       L       +D  L+   + +
Sbjct: 410 RDLFIAFGGHAGAAGMTLEVDKLPHLTEIFSDYIREKGIDLTAKSTLFVDEELDLEELTL 469

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548
             +   +   P+G  +  PVF   + +++S R +    +HL++  +  D      +AF  
Sbjct: 470 DTLKSFDRLAPFGMDHKKPVFYIRDFQVESSRNMGAGNSHLKLKIQKGD-ARFDVVAFGQ 528

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
                   L  S+ K + +   L VN W G    QL V+DA  VEG   +  +
Sbjct: 529 GHLE----LEYSQAKNLELVVSLSVNQWNGQTTLQLMVVDAR-VEGVQLYNIR 576


>gi|253583591|ref|ZP_04860789.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium varium
           ATCC 27725]
 gi|251834163|gb|EES62726.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium varium
           ATCC 27725]
          Length = 860

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 159/581 (27%), Positives = 291/581 (50%), Gaps = 26/581 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RWV     +   +     ++  +   +  +L NRN+   +  K+FL+  ++  + DP  L
Sbjct: 5   RWVYK---DNPLKNNKDIKELNLDKDILNLLYNRNIIEKEEIKNFLDVDVKN-IADPFSL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA  R+VQA  N+E + I+GDYDVDG  SV+L    LS   ++   YIP R  +GY
Sbjct: 61  KDVDKAVNRLVQAKENNETVWIYGDYDVDGITSVSLCFLALSELGIDVKYYIPLR-DEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +    NEG  L+ITVDCG +S++ + +A++ GID+IV DHH++ +    A A++
Sbjct: 120 GLNMEAINYIKNEGGTLVITVDCGISSHEEISHASSLGIDMIVTDHHEINNGNPKALAVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP R D+     +L   G  F+++  +++ L ++       ++   LD+VA+ TV D+VP
Sbjct: 180 NPKREDNDYSFKYLAGVGTAFMMIAALFKTLDKE------EEVYKYLDIVAIGTVADIVP 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI---TAENLGYMIGPSINAGGRIG 312
           L+  NR +V +GL   RR    GL  LI+++     I      ++G++I P  NA GR+ 
Sbjct: 234 LLKENRIFVKEGLEHLRRSRWLGLNMLIKKIFEDYDIRKFNTYDIGFIIAPIFNAVGRLE 293

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I  D +        L   N  R+ ++  + E+A  K+  + + + + SV++
Sbjct: 294 DAKKAVELFIEKDHRVCSAAIKDLLEKNSERKEIQEEIFEKAIEKI--ENEKLYENSVLI 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +++ +P+  +    ++G    S RSIEGF+I + ++     
Sbjct: 352 VGEKGFHHGVIGIVASKVLDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAIN--NFS 409

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L+K GGH+ AAG +++  N          +A   +         K+D  L    ++  
Sbjct: 410 DLLIKYGGHSGAAGFSIKIENIEEFSKKLNDYAKTAMEDSTLIKPIKVDRPLPFYKISYD 469

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            +D +    P+G GNP+P+F+  N +   +R++     H+ M      +E    + F   
Sbjct: 470 FLDKISLLEPFGFGNPSPLFSLNNCQFDGLRLIGKDKKHIMMNVIKNGNEIRNCVWFNSD 529

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 F      + + +   L +  ++   + ++ + D  
Sbjct: 530 DI----FENLVNLRNIDIAFKLKLETYKDRYQYKMYIEDIR 566


>gi|165975918|ref|YP_001651511.1| single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876019|gb|ABY69067.1| single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 512

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/515 (32%), Positives = 255/515 (49%), Gaps = 15/515 (2%)

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143
           ++ A     +I+I GD+D DGA S AL +  L      N +  IPDR   GYG + ++ E
Sbjct: 1   MIDAFKQQSRIVIVGDFDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAE 60

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
             + +GA L+ITVD G +S++ +       I V+V DHH        A A+VNPN  D  
Sbjct: 61  MVLAKGADLVITVDNGISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCS 120

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRA 262
                L   GV F V++ +   +R+         +L  LLDLVAL TV DVVPL   NR 
Sbjct: 121 FPSKSLAGVGVAFYVMLALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRI 180

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R      G++AL E      S + A +LG+ I   +NA GR+   +LG  L
Sbjct: 181 LVHQGLTRIRSGHCRAGIRALAEVSKRELSSLQAGDLGFAIASRLNAAGRLENMSLGVEL 240

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRW 378
           LI+++ +    LA +LD LNQ R+  E  M  +A A        +Q+     I +    W
Sbjct: 241 LIAENMEIARQLAFELDSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADW 300

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGIL 434
           H G++G+LA+R+K++F RP  A + E +      GS RSI G  +  ++         ++
Sbjct: 301 HQGVIGILASRIKDQFHRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLI 360

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           VK GGHAMAAGLT+ + NF +    F +    I+       V   DG L+++ +NI + +
Sbjct: 361 VKFGGHAMAAGLTIHQNNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAE 420

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +L+ AGP+G   P P+F     K+   R++   HL++  E        AI F        
Sbjct: 421 LLQKAGPWGQSFPEPLFEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFP 479

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +  +    K   +   L +N ++G+K  QLR+ + 
Sbjct: 480 DLSI----KSARLIYKLDINEFKGNKNLQLRIENI 510


>gi|15924626|ref|NP_372160.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927216|ref|NP_374749.1| hypothetical protein SA1462 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268116|ref|YP_001247059.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394184|ref|YP_001316859.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156979954|ref|YP_001442213.1| hypothetical protein SAHV_1623 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006421|ref|ZP_05145022.2| hypothetical protein SauraM_08130 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793709|ref|ZP_05642688.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus
           A9781]
 gi|258410992|ref|ZP_05681272.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus
           A9763]
 gi|258420207|ref|ZP_05683162.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A9719]
 gi|258438209|ref|ZP_05689493.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A9299]
 gi|258443672|ref|ZP_05692011.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A8115]
 gi|258446879|ref|ZP_05695033.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A6300]
 gi|269203261|ref|YP_003282530.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282893140|ref|ZP_06301374.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A8117]
 gi|282928271|ref|ZP_06335876.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A10102]
 gi|295406757|ref|ZP_06816562.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A8819]
 gi|296275921|ref|ZP_06858428.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297245660|ref|ZP_06929525.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A8796]
 gi|13701434|dbj|BAB42728.1| SA1462 [Staphylococcus aureus subsp. aureus N315]
 gi|14247408|dbj|BAB57798.1| similar to single-strand DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|147741185|gb|ABQ49483.1| exonuclease RecJ [Staphylococcus aureus subsp. aureus JH9]
 gi|149946636|gb|ABR52572.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156722089|dbj|BAF78506.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787681|gb|EEV26021.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus
           A9781]
 gi|257840142|gb|EEV64606.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus
           A9763]
 gi|257843918|gb|EEV68312.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A9719]
 gi|257848253|gb|EEV72244.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A9299]
 gi|257851078|gb|EEV75021.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A8115]
 gi|257854454|gb|EEV77403.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A6300]
 gi|262075551|gb|ACY11524.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282590078|gb|EFB95160.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A10102]
 gi|282764458|gb|EFC04584.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A8117]
 gi|285817318|gb|ADC37805.1| Single-stranded-DNA-specific exonuclease recJ [Staphylococcus
           aureus 04-02981]
 gi|294968504|gb|EFG44528.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A8819]
 gi|297177311|gb|EFH36563.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A8796]
 gi|312830022|emb|CBX34864.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129920|gb|EFT85910.1| hypothetical protein CGSSa03_02513 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727260|gb|EGG63716.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 757

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 160/588 (27%), Positives = 284/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|323142302|ref|ZP_08077134.1| single-stranded-DNA-specific exonuclease RecJ
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413186|gb|EFY04073.1| single-stranded-DNA-specific exonuclease RecJ
           [Phascolarctobacterium sp. YIT 12067]
          Length = 784

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 163/575 (28%), Positives = 268/575 (46%), Gaps = 25/575 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W          +A  + ++  I  +V  +L+ R +      +DFL  S      DP +
Sbjct: 6   RIWDIKEYNS--QKADYLAEELNISPMVTGILLERGLQDAASMRDFLYGSAAPFH-DPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  ++  RI +A+   E+I ++GDYDVDG ++ +L+  +L         YIP R  +G
Sbjct: 63  LKDMQRSVERIERALAAGEQITVYGDYDVDGISASSLLYLYLKQRGGRVATYIPQRKSEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   ++     G  L+ITVDCG +    +  A  + +D+I+ DHH V     PAYA+
Sbjct: 123 YGLNDEALKNIAENGTTLVITVDCGISGLHEVANA-PKSLDIIITDHHTVPEVLPPAYAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +N  + D      HL   G+ F +   + +  R+  ++P       L +L AL TV D+V
Sbjct: 182 INAKQRDCGYPFKHLSGVGIAFKLCQALEQ--REPGRLPKW---QELTELAALGTVADIV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
           PLIG NR  V +GL         GL+ALI+         A + +G+ + P +NA GR+  
Sbjct: 237 PLIGENRELVRRGLKAMETTKLVGLRALIKASGCPETGIASDNIGFGLAPRLNAVGRLEH 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L   LL++DDS + E +A +L+  N  R+ +   ++E+AEA++  +       + IV+
Sbjct: 297 AQLAVELLVTDDSVKAEKIAAELNRENTLRQEISRQIMEEAEAQLAQEKH---IDTAIVL 353

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+RL +K+  P+  IS   +G   GS RSI   ++ + +    E  +
Sbjct: 354 ASEGWHQGVIGIVASRLVDKYHLPTILIS-LNNGVAKGSCRSIPALNLYEAIDA--ERDL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN-ASAVNIAL 492
           L + GGH  AAGLT+           F ++    +      P   ID VL+ +S ++I  
Sbjct: 411 LTQYGGHHQAAGLTLPAELLPEFKRRFHEYVAQKLSPEDYLPHQAIDCVLSGSSEISIRD 470

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           ++ L    P G  N  PVFAF    L + R +     HLQ     +   + + + +    
Sbjct: 471 LEQLALLEPCGCENQAPVFAFRQALLHNQRAMGKERNHLQFVL-DKGYNSYRGLMWNNAD 529

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
                           V     +N W      QL+
Sbjct: 530 L----LPYMFENMVADVAFQPKINVWNNETSVQLQ 560


>gi|227878806|ref|ZP_03996713.1| recombination protein J [Lactobacillus crispatus JV-V01]
 gi|256849926|ref|ZP_05555357.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus
           MV-1A-US]
 gi|262046827|ref|ZP_06019787.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus
           MV-3A-US]
 gi|227861554|gb|EEJ69166.1| recombination protein J [Lactobacillus crispatus JV-V01]
 gi|256713415|gb|EEU28405.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus
           MV-1A-US]
 gi|260572809|gb|EEX29369.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus
           MV-3A-US]
          Length = 757

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 156/571 (27%), Positives = 267/571 (46%), Gaps = 32/571 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      E    A  + +K+ +  I A++   R ++ D   DF   +    + DP ++ 
Sbjct: 2   KWQERTADE---LAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI + EKI I+GDYD DG  +  +M   LS    + + +IP+R  DGYG
Sbjct: 59  DMDKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN    +  + +G +LIITVD G T  + ++YA    +DVI+ DHH  + ++  AYA V+
Sbjct: 119 PNMDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   I   ++G+ I P +NA GR+  +N
Sbjct: 228 TGEGHIIVKRGLEMLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNAN 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD  E + +A K++ LN  R+ + + + ++    +       Q+ + +V+  
Sbjct: 288 LAVELLLSDDDLEAQKIADKIEELNNKRKELTTEVYDKCMTLIHKNSW--QKQNTLVLYD 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++  + G+  GSGRS  GF++   ++  +++  L 
Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNP-IKDQYLT 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL++E      L + F+   H              D  L    +    +  
Sbjct: 405 KFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKK----YDMELPMQGLTPQTLAQ 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+  G+  P+F+  N  +     +     H++ T   +    L  I F       
Sbjct: 461 INQVGPFWTGDTQPIFSISNPTITHFFKMGKDKNHVKFTVAKKGGN-LSVIGFNKG---- 515

Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQ 583
             FL  +    +      L +N +R     Q
Sbjct: 516 --FLNNNLLPFISQIFVQLSLNTYRNQVSLQ 544


>gi|225027424|ref|ZP_03716616.1| hypothetical protein EUBHAL_01680 [Eubacterium hallii DSM 3353]
 gi|224955251|gb|EEG36460.1| hypothetical protein EUBHAL_01680 [Eubacterium hallii DSM 3353]
          Length = 591

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/601 (27%), Positives = 281/601 (46%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           +W     +   N+   I     I  + AR++ NR+++     + +L  S+  L  D  +L
Sbjct: 3   KWFIASKRADFNKIGEI---FHISPVTARLMRNRSLTTVREMQRYLYGSLSDLY-DSHLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DK A  I + I   +KI I  DYDVDG +S  ++ + L  C  + +  IPDR+ DGY
Sbjct: 59  KDADKGAEIIKEKIETGKKIRIISDYDVDGVSSNYILYQGLKRCGADVDYKIPDRVEDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N  L+EK   +G   IIT D G  + + + Y  + G+ +IV DHH +  +        
Sbjct: 119 GINEHLIEKAAEDGIDTIITCDNGIAAAEQIAYGNSLGLTLIVTDHHDIPFQRQEDGSIS 178

Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                  A++NP + D      ++C A VV+  + ++Y +   D +          L++ 
Sbjct: 179 YNLPSAAAVINPKQKDCPYPFENICGAVVVYKFIQVLYDLFGIDRRESEV-----FLEIA 233

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATVCDV+PL   NR  V +GL   +     GL+ALIE  +     I++ + G+++GP 
Sbjct: 234 AMATVCDVMPLCDENRIIVKEGLRRIQHTNITGLQALIEANHLEEKKISSYHFGFILGPC 293

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +     LL+ +D +     A  L  LN  R+ M +  ++ A+  +  +   
Sbjct: 294 INASGRLTSAKDALELLLCEDKELCRQKAEALTQLNAERKEMTANGVKAAKEYL--ESTG 351

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                V+VV     H  I G++A R+KE + +P F I+  ++G   GSGRSIE + + K 
Sbjct: 352 HANDKVLVVYLPNCHESIAGIIAGRMKEHYHKPVFVITRTKEGL-KGSGRSIEAYHMYKE 410

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           ++    +    K GGH MAAG +++        +     A+  +          ID  L 
Sbjct: 411 MNK--IKECFDKFGGHPMAAGFSMQEDRLEEFREKLN--ANATLTEDDFAEKVHIDVALP 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
            S ++ +LI+  E   P+G  N  P+FA  +  ++ +RV+      L++     +  ++ 
Sbjct: 467 ISYLSESLINEFELLEPFGNENTKPLFAQKDLYIKGMRVLGTTGRCLKLFLSDANGTSID 526

Query: 543 AIAFRVYGTPLGEFLM---QSRGKRM----------HVTGHLCVNYWRGSKRCQLRVLDA 589
           A+ F      L E +    +   +R+           VT +  VN WRG K  Q+ + + 
Sbjct: 527 AMYFGESDVFLEELISFCGKEEAQRIQKGLSHHIWMDVTYYPQVNEWRGQKNIQIVIQNY 586

Query: 590 S 590
            
Sbjct: 587 R 587


>gi|317131340|ref|YP_004090654.1| single-stranded-DNA-specific exonuclease RecJ [Ethanoligenens
           harbinense YUAN-3]
 gi|315469319|gb|ADU25923.1| single-stranded-DNA-specific exonuclease RecJ [Ethanoligenens
           harbinense YUAN-3]
          Length = 679

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 180/578 (31%), Positives = 278/578 (48%), Gaps = 27/578 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+    +E   R L   +      ++AR+L  R     D A+ FL+      + DPL+
Sbjct: 2   REWIIGAPEEQAARTL---RDAGASPVLARLLALRGFADADGAQAFLDC--AGTLHDPLL 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +AA R+ QAI   E I ++GDYDVDG  + AL+  +L     +A  Y+P+R  +G
Sbjct: 57  LADMPRAAERVRQAIEKKETIAVYGDYDVDGVTAAALLTGYLREQGADAFAYLPERESEG 116

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   + +    GA L ITVD G ++ +  + A   G+D+IV DHH+  +E   A+A+
Sbjct: 117 YGLNSPALARLRACGAALCITVDTGISALEEAESAREWGLDLIVTDHHEPHAELPGAFAV 176

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P R D       L   GV F +   +      +             DL+ L TV DVV
Sbjct: 177 VDPKRPDCPYPFKGLAGVGVAFKLACAV------EGPGSETALFARYGDLLCLGTVADVV 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
           PL+  NR  V +GL +  + G PGL AL+E+         A  L + + P INA GR+  
Sbjct: 231 PLLDENRVLVKRGLDMFAQAGRPGLAALLEQAGAGGKAPNASLLAFTVAPRINAAGRMDS 290

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LL++      + LA  L   N  R+  E+ +LE+ EA +      + Q  V++V
Sbjct: 291 ALPALELLLTASPARAKTLAEHLCACNDARKREEARILEETEAVIHADG--LLQNKVLIV 348

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ W  G++G++AARL E+F RP+  +SF EDG G  S RS EGF + K +S      +
Sbjct: 349 AGEGWADGVIGIVAARLTERFERPAMVLSFGEDGVGRASCRSFEGFALHKALSAC--APL 406

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGHA+AAG ++ R N     +  + FA +        PV ++D  L+A  + +A  
Sbjct: 407 LEKYGGHALAAGFSIRRENLPAFRETVEAFAADC----DILPVLRLDCALDAEDLTLAAA 462

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +      P GA NP P+F   +  +  +R +    HL++           A+ F      
Sbjct: 463 EDCARLEPCGAENPAPLFYLEDVLVAEVRPLSGGKHLRLACRM-GGRPFDALVFGA--ER 519

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +G     ++G  + +   L VN W+G +   + V    
Sbjct: 520 MGRTF--AKGDVLDLAAELSVNEWQGRRSLSVLVRAVR 555


>gi|282916904|ref|ZP_06324662.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770710|ref|ZP_06343602.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319391|gb|EFB49743.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460857|gb|EFC07947.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus H19]
          Length = 757

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 159/589 (26%), Positives = 286/589 (48%), Gaps = 30/589 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           ++W      E I+    +T K  +  IV ++L ++++  +   +  ++ +   +  D L 
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQTIESIISDT--DINHDALQ 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L+D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +G
Sbjct: 62  LSDMTKAIDRIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+
Sbjct: 122 YGPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P           LC AGV + +   +   +                 LVA+ T+ D+V
Sbjct: 182 VHPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLV 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ ++
Sbjct: 231 SLTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+  +      +++ 
Sbjct: 291 SLACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLA 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + +
Sbjct: 349 KENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQEL 406

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I
Sbjct: 407 IAKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNI 466

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551
             +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G 
Sbjct: 467 RDMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGH 522

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 523 LEPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|206891034|ref|YP_002248126.1| single-stranded-DNA-specific exonuclease RecJ [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742972|gb|ACI22029.1| single-stranded-DNA-specific exonuclease RecJ [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 557

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 178/579 (30%), Positives = 281/579 (48%), Gaps = 37/579 (6%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           WV +   +       I++   I    A+VL+++ +  ID    FLNP+I  +  DP  +T
Sbjct: 6   WVVVKTNQEY--LQYISKSLNITIPTAQVLLSKGLKDIDEIYSFLNPNIDNI--DPFEIT 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +A + I  AI +  KI+I GDYD DG  S A++   L         +IP RI  GYG
Sbjct: 62  GIYEATKIIDAAIKSETKILINGDYDADGLTSTAILYDILIKKGAKVFYHIPHRIQHGYG 121

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV----KSEEIPAY 192
            +   +E+    GA+LIITVDCG   ++A++YA  +GI VI+ DHH+     +    P  
Sbjct: 122 LSIRSIEEAKKIGAKLIITVDCGIRDFEAVEYANKEGIGVIITDHHEPLRLNEEVVTPHA 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
             V   ++D      +L   GV F++ + + R            + L  LDLV L T  D
Sbjct: 182 LAVINPKIDGKPYYNYLAGVGVAFMLAMALSRE-----------EALGYLDLVTLGTYAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +VPLI  NR  +  G  +        +K L     I+S  I   +L + + P INA GRI
Sbjct: 231 MVPLIHANRTLIKHGWEMIDSPVRNSIKMLKNIAGINSNSIRGFHLSFCLIPRINAPGRI 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++    R LIS+D  EL+ L+  L+ +N  R+  E  ++ + E K+  + DD     VI
Sbjct: 291 DQAGDVVRFLISEDESELDSLSKWLNQINSMRQKTEEKIMAEVEEKLSKEFDDE---PVI 347

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ GD WHPG+VG +A++L +KF RP+F +S + + K  GS RS  G D+ + ++    +
Sbjct: 348 VLWGD-WHPGVVGTVASKLMDKFNRPAFILSIQGE-KAKGSARSPAGIDLQEFLNA--SK 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L++ GGH  AAG+T+ + N     +     A  IV       +  +D  +N + V   
Sbjct: 404 DLLIRFGGHKQAAGMTLLKDNLYAFKEKLCLIAQEIVRDD--KNILLLDAAVNLNEVTEK 461

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
           + + +    P+G GN  P+F      + ++R V   HL+M    Q+  T+ AI F +   
Sbjct: 462 VAEEISLLEPFGEGNREPLFGAKELTVLNLRKVGNNHLKMFLR-QNGNTIGAIGFDMGDA 520

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + E      G  +       +N W G K  QL++    
Sbjct: 521 QILE------GSLIDAAFTPSINEWEGMKSLQLQLKALR 553


>gi|325842226|ref|ZP_08167643.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter sp.
           HGF1]
 gi|325489693|gb|EGC92052.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter sp.
           HGF1]
          Length = 741

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 168/591 (28%), Positives = 275/591 (46%), Gaps = 34/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72
           S F W            L +     + D V ++++NR+++ +     FL+      + DP
Sbjct: 4   SNFLWQWSES----IGELELGFNSNLRDEVKQLILNRHLASEKSIDTFLSG--EGPLYDP 57

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            + +D  K+  RI +AI N E I+I+GDYD DG    +++MR L       + YIP+R  
Sbjct: 58  FLFSDMKKSVDRINKAIENQEPILIYGDYDADGVTGTSILMRALRGLGAIVDYYIPNRFY 117

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN     + I++G +LIITVD G +           G+D+I+ DHHQ   E  P  
Sbjct: 118 EGYGPNEDAFMQAISDGYKLIITVDNGISGLLEADILPPYGVDLIITDHHQ-PKECHPNA 176

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
             +    LD       L  AGV   +   +            +        + AL T+ D
Sbjct: 177 FSIIHPELDSSYPFYQLSGAGVALKLAQALI----------GDGLSEEYFAIAALGTIGD 226

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311
           VVPLI  NR  V +GL   RR    GL AL+    I      E N+G+ I P +NA GR+
Sbjct: 227 VVPLIDENRYIVKRGLEAIRRTELCGLNALMNEAKIDKSEVDEVNVGFEICPRLNAPGRM 286

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            E+ L   LLISDD  E  ++A +++  N  R+ +   +L+QA   +  +   ++   V+
Sbjct: 287 DEAALAVELLISDDEMEAALIATQIESFNLERQKVTQKVLDQASTLMTPK--QLEDKKVV 344

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           ++    WH GI+G++A RL + + +  F ++ + DG   GS R++EG+ +         E
Sbjct: 345 LLYQPNWHEGILGIVAGRLSKLWQKAVFVLTDDHDGFVKGSARAVEGYHL--FDLLNQNE 402

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ + GGHA+AAG+T+   N   L D         +  +   P+ ++D  L+   +++ 
Sbjct: 403 DLIERFGGHALAAGITLAPENIQPLEDKLN----ADLRGIKIQPMQRVDLNLSLEKIDLE 458

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549
           L++ L    PYG GN  PV      K+++I+ +     HL+ T   +  + L AIAF   
Sbjct: 459 LVEDLAVLAPYGEGNRPPVIGIEQVKVKNIKAIGNKLQHLKFTIYDEAHQ-LDAIAFNKA 517

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                  +  +        G + +N W G++  Q  V+D    E      +
Sbjct: 518 DL----MIYLTPDTLFDFIGEIKINEWNGNRTVQFHVMDVKCDEFQLLDLR 564


>gi|225410141|ref|ZP_03761330.1| hypothetical protein CLOSTASPAR_05362 [Clostridium asparagiforme
           DSM 15981]
 gi|225042330|gb|EEG52576.1| hypothetical protein CLOSTASPAR_05362 [Clostridium asparagiforme
           DSM 15981]
          Length = 578

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 169/588 (28%), Positives = 277/588 (47%), Gaps = 34/588 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLIL 75
           +W+    +   N    I  +  I  + AR++ NR+V  + A   +L  S+   M DP +L
Sbjct: 9   KWMLHAKKADFN---EIGMRFHISPVTARIIRNRDVVGEEAIGRYLFGSVEQ-MYDPRLL 64

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D ++A   +   I    +I I GDYD+DG  S  ++ R L       +  IPDR+ DGY
Sbjct: 65  PDMERAVEILEGKIAAGARIRIVGDYDIDGVCSTYILYRGLKRLGAAVDYEIPDRVKDGY 124

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N S++     +G   I+T D G  +    + A   G+  ++ DHH ++          
Sbjct: 125 GINESIIRAASADGVDTILTCDNGIAAVSQFELAKELGMTAVITDHHDIQTVEDGEGGER 184

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA ALVNP R D     G +C A V + ++ ++Y             + L +L+  
Sbjct: 185 DLLPPADALVNPKRRDSRYPNGAICGAMVAYKLIQVMYERAGVPG-----DEWLEMLEFA 239

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPS 304
           A+ATV DV+ L   NR  V +GL       N G++ LIE+ N+    I+A ++G++IGP 
Sbjct: 240 AIATVGDVMKLQDENRIVVKEGLKRLGISKNLGIRKLIEKNNLDPKAISAYHIGFVIGPC 299

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NAGGR+  + L   LL+ +D  E + LA++L  LN  R+ M    ++QA   V  +   
Sbjct: 300 LNAGGRLQTAKLALSLLLCEDEGEADRLALELKELNDQRKDMTQQGVDQAVELVEERYL- 358

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                V+VV     H  + G++A R++E++ +P+  ++  EDG   GSGRSIE + +   
Sbjct: 359 --NDKVLVVFLPDCHESLAGIVAGRIRERYCKPTLILTRSEDG-AKGSGRSIEAYHM--F 413

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
            +    + +L K GGH MAAG ++             + A   +      P   ID  + 
Sbjct: 414 NALVEVKDLLTKFGGHPMAAGFSLPEDKVDEFRRRLNENAK--LTEEDFIPKIWIDVAMP 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +N +LI+ LE   P+G GN  P FA     ++S RV+      +++   ++    + 
Sbjct: 472 FEYINESLIEELELLEPFGQGNEKPQFAQKGMVIRSSRVMGKNRNVVKLNLVNERGRAMD 531

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           A+ F      + E     R + M V  +  VN + G++  QL V +  
Sbjct: 532 AVVFTDGDEFVAEM---GRSRMMDVIYYPSVNEYNGNRTLQLVVKNWK 576


>gi|325922461|ref|ZP_08184228.1| exonuclease RecJ [Xanthomonas gardneri ATCC 19865]
 gi|325547081|gb|EGD18168.1| exonuclease RecJ [Xanthomonas gardneri ATCC 19865]
          Length = 579

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 174/565 (30%), Positives = 276/565 (48%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+        +P +  L+  P +L + D AA  +  AI +  +I++ GD
Sbjct: 24  PLLRRIYAARGVTDTQGA---HPRLGQLL-SPELLHNSDVAAELLADAIAHQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       L++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDLLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLANDSFPSKSLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + +  +LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R  +G 
Sbjct: 200 LALRSVLRARGAFADRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ + P +NA GR+ +  LG  LL+S+D      +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALAPRLNAAGRLEDMALGIELLLSEDWSRAREIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V       D +      +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGELPIAACLFDAEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSLLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSMD 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F+    ++V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFRSQVQSMVDASLLHAELHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +            G+ + + 
Sbjct: 500 LFDGR-FEVLQCRVLKERHLKLTLRCAGRAEPLNAIHFNGWRG-------SEPGRMVRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    P  
Sbjct: 552 YRLVSDDYRGGTAVQLIVEHCEPAT 576


>gi|40062787|gb|AAR37681.1| single-stranded-DNA-specific exonuclease RecJ [uncultured marine
           bacterium 439]
          Length = 564

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 169/562 (30%), Positives = 262/562 (46%), Gaps = 31/562 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM-PDPLILTDCDKAARRIVQAIYNSEKIM 96
            IP  +  +   R+V+       L  S+  L+ P+   L   D A   + +AI  + +I+
Sbjct: 17  DIPVFLKNIYAARSVTESQ----LTLSLPGLLKPNFDQL---DVALNLLERAITENRRIL 69

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLM-EKFINEGAQLII 154
           I GD+D DGA + A+ ++ L        +  +P+R   GYG +P ++ E    +   +II
Sbjct: 70  IVGDFDADGATASAVAIKALRMMGTKFVDFLVPNRFEHGYGLSPEIVNEAKKEKDPDIII 129

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S +    A + GIDVI+ DHH   +    A A++NPN         +L   GV
Sbjct: 130 TVDNGISSIEGTSLARSLGIDVIITDHHLPPTILPDANAIINPNLEGCKFPSKNLAGVGV 189

Query: 215 VFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            F +   +   L   N    N     DL  +LDLVAL TV DVV L   NR  V +GL  
Sbjct: 190 CFYLFSALKTHLEGLNYFEKNKISVPDLREILDLVALGTVADVVKLDQNNRILVSEGLKR 249

Query: 271 ARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            R++         L         + A +LG+ + P INA GR+ + + G   L+S+D  +
Sbjct: 250 IRQKRCSKGILAILELTKRPVESLQASDLGFSVAPRINAAGRLSDISQGISCLLSEDIND 309

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
               A  L+  N+ RR  +S M ++A A V  Q  D +    I +  + WH GIVG++A 
Sbjct: 310 ARRYAANLEKFNKERREEQSRMQDEALAIVAEQSID-ESPFAITLFDESWHEGIVGIVAG 368

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGL 446
           +LKE +  P    +        GS RSI    I  ++     E    + K GGHAMAAGL
Sbjct: 369 KLKEDYQCPCVVFAKSGK-LLKGSIRSISDVHIKDLLDLIDRENPTLIGKFGGHAMAAGL 427

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T+   NF    + F +   + +           DG L+AS + +   ++L  A P+G G 
Sbjct: 428 TINPENFEEFKEAFTRAITDHLEGKKPIIELLTDGKLDASEMTLNNAELLRQASPWGQGF 487

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL-QAIAFRVYGTPLGEFLMQSRGKRM 565
             P+F   + +L   R+V   HL+ T +  D+ ++ + IAF         F  +   K++
Sbjct: 488 EEPIFYG-DFELLEQRIVGEKHLKCTLKLVDNSSIFEGIAF---------FQEKLESKQV 537

Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587
            V   L VN +RG++  QL + 
Sbjct: 538 RVAYKLNVNSFRGNESLQLMIE 559


>gi|323487484|ref|ZP_08092778.1| hypothetical protein HMPREF9474_04529 [Clostridium symbiosum
           WAL-14163]
 gi|323399166|gb|EGA91570.1| hypothetical protein HMPREF9474_04529 [Clostridium symbiosum
           WAL-14163]
          Length = 569

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 169/579 (29%), Positives = 283/579 (48%), Gaps = 29/579 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76
           W+    +   NR   I ++  I  + AR++ NR +  +     +LN ++  L  DP ++ 
Sbjct: 6   WMVQTKKADFNR---IAERFGIDPVTARIIRNRGIEGEDRINLYLNGTVGTLY-DPRLMK 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +KAA  +   I   +KI I GDYD+DG  S  ++ +         +  IPDRI DGYG
Sbjct: 62  DMEKAAAILKDKIDRKKKIRIVGDYDIDGVCSTYILYKAFLRLGAPVDYDIPDRIRDGYG 121

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-----SEEIPA 191
            N S++EK   +G   I+T D G ++Y  ++ A  +G+ V++ DHH+V          PA
Sbjct: 122 INESIIEKAAEQGIDTILTCDNGISAYSQIELAKKKGMTVVITDHHEVPLEEGKEIIPPA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+++P R +       +C A V + ++ +++             +   LL+  A+ATV 
Sbjct: 182 DAVIDPKREECSYPFPEICGAVVAWKLVQVLFAECGV-----PAKEWEELLEFAAIATVG 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           DV+ L   NR  V  GL       + GL+ L  + N+  S ITA ++G++IGP +NAGGR
Sbjct: 237 DVMRLQDENRIIVKYGLSRMEHTSSIGLRKLAAKNNLDLSQITAYHIGFVIGPCLNAGGR 296

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  + L   LL+S D +E + LA +L  LN  R+ M     E A  +V T      Q  V
Sbjct: 297 LQTAKLALSLLLSGDEEEADRLATELKELNDMRKDMTEQGTEAARLQVDTY---YSQDKV 353

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV     H  + G++A RL+E + +PS  ++  E+    GSGRSIE + +      +  
Sbjct: 354 LVVYLPECHESLAGIIAGRLREHYQKPSIVLTKGEEAV-KGSGRSIESYHM--FQKLSEV 410

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + +++K GGH MAAGL++E  N G       +   + +          ID  +  + +  
Sbjct: 411 KELMLKFGGHPMAAGLSLEEKNIGEFRRQLNE--RSGLREEDFKAKVWIDVPMPVNYMTE 468

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRV 548
            LI       P+G GN  P+FA  N ++++ RV+      +++T E ++   ++AI F  
Sbjct: 469 RLIREFRCLEPFGQGNEKPLFAQKNLRVRNSRVIGRNRNVVRLTLEEENGFAMEAIYF-- 526

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
            G  +     +   + M +  +  +N + G+K  Q  V 
Sbjct: 527 -GDGIAFEDERGGRRVMDIVYYPEINEYNGNKSLQAVVR 564


>gi|223044130|ref|ZP_03614169.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           capitis SK14]
 gi|222442524|gb|EEE48630.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           capitis SK14]
          Length = 757

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 159/591 (26%), Positives = 284/591 (48%), Gaps = 30/591 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72
           S + W      E I     + +K  +  IV +VL ++N V  +   D L   +  L  DP
Sbjct: 4   SRYHWDLAQPTEYITD--DLAKKLKLSPIVKKVLESKNLVQENNILDVLEDKV--LDHDP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D  KA  RI  AI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  WLLSDMQKAIDRINLAIDKNERILVYGDYDADGVTSTTILVNTLQQLGAQVGWYIPNRFS 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN        +EG  LIITVD G   +D ++   + G+DVIV DHH++      A 
Sbjct: 120 EGYGPNELAFRNAYDEGISLIITVDNGIQGHDEIKMVQDLGVDVIVTDHHEIGRTLPEAL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D      +LC AGV + +   +     Q             + L A+ T+ D
Sbjct: 180 AIVHPMHPDFDYPFKYLCGAGVAYKLSQALLSHPPQ-----------QFIALAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR+ V +GL +   Q    + A++++   +  I  E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRSIVKRGLKILNEQTPVSINAILKQAGYNDQINEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+ D+ +E E LA +++  NQ R+ + + + E+A +    Q    Q    ++
Sbjct: 289 DASLAAELLMVDEFEEAEFLAEQVEHFNQERKDIVAEITEEALSLAEEQV--QQGNLFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +  + WH G++G++A+++ E +  P+  ++ + E     GS RSI+   +         +
Sbjct: 347 LAKENWHEGVLGIVASKIVETYALPTLILNIDLEQNHAKGSARSIDQVSM--FEILNAHQ 404

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGH MAAG+T++  N   L     ++   +  +    P   +D +LN S + + 
Sbjct: 405 DLITKFGGHHMAAGMTMDIENIDELRKGLNEWMKQLSESTSLAPRKHVDVLLNESEITVK 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            I  ++   P+G    +P F   +  ++SI+ +     HL++         L A+ +   
Sbjct: 465 NIQDIQKLRPFGTDFNSPTFEVNDLNVKSIKAIGQEGKHLKVAL---GENQLAALYWSYG 521

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                       G+ +++ G+L +N W G++  QL + D +         +
Sbjct: 522 HF----AKEIEMGQPLNLIGNLQINEWNGNQSPQLIIQDIATETIQILDYR 568


>gi|255280218|ref|ZP_05344773.1| single-stranded-DNA-specific exonuclease RecJ [Bryantella
           formatexigens DSM 14469]
 gi|255269309|gb|EET62514.1| single-stranded-DNA-specific exonuclease RecJ [Bryantella
           formatexigens DSM 14469]
          Length = 598

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 176/590 (29%), Positives = 287/590 (48%), Gaps = 35/590 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
            +WV    +       AI +K  I  + AR++ NR+V  D A +++LN S+  L      
Sbjct: 23  QKWVVAAKRADFG---AIAEKFGIDQVTARLIRNRDVVGDAAIEEYLNGSLLNLHSA-HQ 78

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + DCDKAA  +   I   +KI I GDYD+DG  +  ++ R L  C  N +  +PDRI+DG
Sbjct: 79  MKDCDKAAALLADKIDAQKKIRIIGDYDIDGVCATCILYRALQLCGANVDYDLPDRILDG 138

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N +L++   +EG   I+T D G  + + + YA + G+ VIV DHH+       A AL
Sbjct: 139 YGLNRNLIDLAGDEGVDTILTCDNGIAAVEEVAYARSLGMTVIVTDHHEPGEVLPEADAL 198

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP++        +LC A V + ++ ++   +          +   L++L   ATV DV+
Sbjct: 199 VNPHQKSCPYPYKNLCGAAVAYKLVTVLCEAMGI-----PQDESEKLIELAGFATVGDVM 253

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V +GL+      NPGL+ALI   N     IT+ ++G+++GP +NAGGR+  
Sbjct: 254 DLTGENRILVKEGLLQLNHTENPGLQALIRVNNLQDKEITSYHIGFVLGPCLNAGGRLDT 313

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LL++    E  +LA +L  LN+ R+ M     EQA   +  +   ++   V+VV
Sbjct: 314 AKKSLELLLAQSEAEATLLAEELLELNERRKAMTLEGYEQAVELI--ENGPMRDDKVLVV 371

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
                H  + G++A RL+E++ RP+  ++  E     GSGRSIE + + + +       +
Sbjct: 372 YLPDCHESLAGIIAGRLRERYYRPAIVLTQGESAV-KGSGRSIESYSMFQELQKC--ADL 428

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
            +K GGH MAAG ++E+ N G L       A   +     T    ID  +    +   LI
Sbjct: 429 FLKFGGHPMAAGCSLEKENVGELRRRLN--AQTTLTQEDLTEKIVIDVPMPLGYITERLI 486

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGT 551
           + L    P+G GN  PVFA  N  + S R V  +   +++   +     + A+ F    T
Sbjct: 487 EELSCLEPFGKGNSKPVFAEKNLDILSARAVGQSGRVVRLRVANAAGTVMDAVYFG-DAT 545

Query: 552 PLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587
              E++ +  G+              ++ V  +  ++ + G +  Q+ V 
Sbjct: 546 LFREYVEEKYGRTETEKLFQGRRNAVQLSVIYYPSIHEYNGLRSIQIVVQ 595


>gi|318041656|ref|ZP_07973612.1| single-stranded DNA-specific exonuclease [Synechococcus sp. CB0101]
          Length = 635

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 165/581 (28%), Positives = 272/581 (46%), Gaps = 29/581 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAI-PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           S  RW      +   +     +   +   ++A VL  R     +     L P+     PD
Sbjct: 6   SEQRWQLPAPVQIDPQL----RSSGLCDPLLA-VLQRRGYGDPEAIAALLEPAPA---PD 57

Query: 72  PL-ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P     D  KA +R+  A    E++ I GDYD DG  S AL++  L H        IP R
Sbjct: 58  PRRHFPDLGKAVQRLRLACKQGERLAICGDYDADGMTSTALLVGVLRHLGAQPQAEIPSR 117

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + DGYG N  ++E+   EG +L++TVD G  + +AL  A    +DV+V DHH +  E  P
Sbjct: 118 LDDGYGLNTGMVERLAEEGIRLLVTVDNGVAAREALLRAEALEMDVVVTDHHTLPEELPP 177

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
             AL++P    + S    L   G+ +++ + + R  R +  + +        DL  + T+
Sbjct: 178 LMALLHPACTPEHSPYRGLAGVGLAYVLAMALARNCRSEQGLAMAR------DLFCIGTI 231

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309
            D+ PL G+NR +++ GL   +R G  GL+AL +      +P+ A  +G+ I P INA G
Sbjct: 232 ADMAPLQGVNRRWLIDGLPGLKRSGLAGLQALQQVAGLEDAPVDAGAVGFQIAPRINAVG 291

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G+  L   LL + D +E   LA + + LN+ RR +  A+   AEA+ L   D  Q++ 
Sbjct: 292 RLGDPQLVVDLLTTADEKEALELARQCEQLNRQRRDLCDAIE--AEARALVDADGDQRSP 349

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            +++    WH G++G++AARL + FG P   ++ E DG+   S R+  GF +   +    
Sbjct: 350 FLLLAQSHWHHGVIGIVAARLVDAFGLPVALLASEGDGRLRASVRAPRGFAVDAALQAC- 408

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +L + GGH  A G TV       L +     A   +       + + + ++    + 
Sbjct: 409 -SDLLERHGGHPAAGGFTVRAEQITALHERLNARAETWLQQQGGLRLVEPEALVQLQEIT 467

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
                 L+   P+G+G+P P+F     ++   R++   HLQ+T    D   ++AIA+R  
Sbjct: 468 PQFWQQLQRLEPFGSGHPAPLFWSSRCRISQQRLLRGGHLQLTLRQGD-AVIRAIAWRWG 526

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    Q   K + V   L +N W G+++ QL +    
Sbjct: 527 NDE------QQLPKEVDVAFQLRLNRWNGTEQLQLEIAALR 561


>gi|227890210|ref|ZP_04008015.1| possible recombination protein J [Lactobacillus johnsonii ATCC
           33200]
 gi|227849212|gb|EEJ59298.1| possible recombination protein J [Lactobacillus johnsonii ATCC
           33200]
          Length = 756

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 160/577 (27%), Positives = 279/577 (48%), Gaps = 30/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W              + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQRQANNLD---EGLIKDYGLTDIQAKLFALRGINTAENLDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K   RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN +  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  A++ V+
Sbjct: 119 PNMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI+   ++   ITA ++G+ I P +NA GR+  ++
Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKPAGLTMGQITATDVGFNIAPRLNAVGRLANAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A +++ LN  R+ + S + E   A+V       Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEKIATRIEELNNERKELTSKVYEDCLAQVEKNGW--QHRNTLVIYN 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E G+  GSGRS +GF++   +   ++E +L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDEAGELKGSGRSSKGFNLFNALEP-MKEDLLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+ +        +  +    +         V   D  LN   +    I  
Sbjct: 405 KFGGHDFACGLSFKADKI----EELRVRFEDSFKPSTDLEVKDFDFELNLKEITTDTIAE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +   GP+G GNP P+F+     ++S+  +     H++ T E    + L  + F      L
Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNAGK-LTIVGFN--KGFL 517

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + L+    +   +   L +N W+     Q  +    
Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551


>gi|170017530|ref|YP_001728449.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc citreum
           KM20]
 gi|169804387|gb|ACA83005.1| Single-stranded-DNA-specific exonuclease RecJ [Leuconostoc citreum
           KM20]
          Length = 654

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 170/581 (29%), Positives = 272/581 (46%), Gaps = 26/581 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72
           S   W  +           +T +  I  + A ++  +  +   A   +L P+I  L  DP
Sbjct: 2   SQSNWRLMPQPPEKA-VRQLTSQLNINQLTATIVAQKGYTTPEAAFGYLQPTITQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L D DKA  R+ +A +  EKI+++GDYD+DG  S A+M+  L     +   YIP+R  
Sbjct: 60  MLLHDMDKAFERLTEAAFGGEKIVVYGDYDLDGVTSTAVMVEALEVLGADVTAYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN +  ++ I EGAQ+I+TVD G + ++A+  A   G+DVI+ DHH++      AY
Sbjct: 120 DGYGPNVAAYQRLIAEGAQVIVTVDNGVSGHEAVAMAMRAGVDVIITDHHELAPTLPEAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D       L   GV F +   +            +     LLDLVAL  + D
Sbjct: 180 AIVHPRHPDGHYPFADLSGVGVAFKLAQALLT--DAQPVTEKSELPTELLDLVALGEIAD 237

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310
           +V L   NR  V  GL        PG+ AL++        PI +E + + I P +NA GR
Sbjct: 238 MVSLTDENRTLVSWGLKQISDSPRPGIAALLKNAGQVADQPINSETVSFKIAPRLNAVGR 297

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G++ L   LL+S D      LA +++ +N  R+ +   +   A+       D      V
Sbjct: 298 LGDAKLALDLLVSQDDDTAVNLATQVEAINAQRQEIVEEVFGAAKQIA--LSDKYHDDQV 355

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +V+ G+ WH GI+G++A+RL E   +P   +S  + G   GSGRS   FD+  ++     
Sbjct: 356 LVIAGENWHRGILGIVASRLVELMQKPVIVLSQVD-GVYKGSGRSYGNFDLYTLMG--QY 412

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA A GL +   +   L    Q     + P  I      ++ +L+A  +  
Sbjct: 413 RDLYDTFGGHASALGLAITPAHLTSL----QNQIKQLQPLNIAEKEVNVNMMLSAETMTT 468

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
           A  D L    P+G  NP PVF     K+     +     H+++T  +     ++A+ F  
Sbjct: 469 ASYDALTLLEPFGTDNPQPVFGVQEPKIAKAATMGTTNQHIKLTLANH----VEAVGFNH 524

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                    + +  + +     L +NY+RG K+ QL + D 
Sbjct: 525 PEW----ASVVAHPQNISFAATLGMNYFRGQKKLQLLLADM 561


>gi|53805029|ref|YP_113143.1| single-stranded-DNA-specific exonuclease RecJ [Methylococcus
           capsulatus str. Bath]
 gi|53758790|gb|AAU93081.1| single-stranded-DNA-specific exonuclease RecJ [Methylococcus
           capsulatus str. Bath]
          Length = 599

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 180/588 (30%), Positives = 279/588 (47%), Gaps = 38/588 (6%)

Query: 32  AITQKHAI------PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
            + ++ ++        ++AR+  +R+V + +     L  S+  L P P +L   D     
Sbjct: 22  ELAKRMSLASPPDASPLLARLYQSRSVFTPED----LGRSLNEL-PAPSLLKGMDAMTAE 76

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME 143
           +  AI   + IMI  D+D DGA S A+ MR L        +  +P+R   GYG  P L+E
Sbjct: 77  LEAAIRGQKSIMIVADFDADGATSCAVAMRGLRALGAERVSFIVPNRFTCGYGLTPELVE 136

Query: 144 ---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
              +       +++TVD G   +  +  A  +G+ V+V DHH        A A+VNPN  
Sbjct: 137 LIFRGGATPPDMLLTVDTGIACHAGIAAARARGMKVLVTDHHLPGESLPAADAIVNPNLP 196

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLI 257
            D      L   GV+F VL  + R LR+           +L  LLDLVAL TV DVVPL 
Sbjct: 197 GDGFPGKALAGVGVIFYVLSGLRRRLRESGWFEGGRQPPNLAELLDLVALGTVADVVPLD 256

Query: 258 GLNRAYVVKGLMVARR-QGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIGE 313
            +NR  V +GL   R  +  PG++AL+E  +        TA  LG+ +GP +NA GR+ +
Sbjct: 257 RVNRILVHQGLQRIRAGRACPGIRALLEVADAKRGGAATTAGTLGFTLGPRLNAAGRLDD 316

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV- 372
            +LG   L++DD    + LA +LD +N+ R+ +E+ M   A A +    + + + S    
Sbjct: 317 MSLGIACLLADDMNAAKELAERLDGMNRERKTIEAQMQADAWAMLRIGAEPLPRQSDRWS 376

Query: 373 -----VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS- 426
                V    WH G++G+LA+R+K++  RP  A +  EDG   GS RSI G  +  ++  
Sbjct: 377 GSAAIVFDPAWHQGVIGILASRIKDRLHRPVIAFARGEDGLLRGSARSIAGVHVRDVLCA 436

Query: 427 -FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             A   G++V+ GGHAMAAGL +E        + F+     ++  +        DG L  
Sbjct: 437 VAARHPGLIVRFGGHAMAAGLALEESRLAAFTEAFEAEVAGVLEGVELEHAVVTDGELPP 496

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAI 544
              ++     L  AGP+G G P P+F      +  +R+V   HL++T E    +  ++ +
Sbjct: 497 DDFHLDTARCLRDAGPWGQGFPEPLFDGE-FDVLGMRIVGEKHLRLTLEVPGAARQVEGV 555

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           AF V   P          +R+     L VN +RG    QL +    PV
Sbjct: 556 AFFVADPPAW-----LGCRRLRAAYRLDVNEFRGVSNLQLGIEYMEPV 598


>gi|238028011|ref|YP_002912242.1| putative single-stranded-DNA-specific exonuclease [Burkholderia
           glumae BGR1]
 gi|237877205|gb|ACR29538.1| Putative single-stranded-DNA-specific exonuclease [Burkholderia
           glumae BGR1]
          Length = 564

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 181/576 (31%), Positives = 276/576 (47%), Gaps = 30/576 (5%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
                A A+  +H +  ++AR+   R V+  +  +     ++  L+P P  L  CD AA 
Sbjct: 9   ASPADAEALA-RHGLHPVLARLYAARGVTCPEDIET----TLARLVP-PGGLKGCDAAAA 62

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
            +  A+   +++++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++ 
Sbjct: 63  LLADALAAGKRMLVVADYDCDGATACAVAVRGLRMLGATIDYLVPNRFEYGYGLTPEIVR 122

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
                   L+ITVD G  S + +  A   GIDV+V DHH   S    A A+VNPN+    
Sbjct: 123 LAAARRPDLLITVDNGIASVEGVAAANALGIDVLVTDHHLPGSTLPAARAIVNPNQPGCT 182

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLN 260
               H+   GV+F VL+ +   LR+ N          L  LLDLVAL TV DVV L G N
Sbjct: 183 FPSKHIAGVGVMFYVLLALRAELRRRNAFDAARPEPRLDGLLDLVALGTVADVVRLDGNN 242

Query: 261 RAYVVKGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGS 318
           R  V +GL   R                  +   +A +LG+ +GP +NA GR+ + +LG 
Sbjct: 243 RVLVAQGLQRIRNGRMQPGIAALFRAAAREARSASAFDLGFGLGPRLNAAGRLSDMSLGI 302

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
             L +DD+     LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I +    W
Sbjct: 303 ECLTTDDAGRAWELAQQLDTMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPDW 360

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGIL 434
           H G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      E  +L
Sbjct: 361 HQGVIGIVAGRLKEKFHRPSFTFAHADDSGARVKGSGRSIPGFHLRDALDLVSKREPDLL 420

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           V  GGHAMAAG+T+E  N  R    F+  A   + A     V + DG L  +      ++
Sbjct: 421 VTFGGHAMAAGVTLETHNVPRFAAAFEAVAREWLSADALARVIETDGDLEDAYFTPQFVE 480

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +++ A  +G G P P+F+    ++ S  +V   HL++   ++  +   AI F        
Sbjct: 481 LID-AAVWGQGFPAPLFSGE-FEVASQTLVKDKHLKLQL-ARGRQRFGAIWFNHTE---- 533

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    R  +   L  + W G  R QL V  A+
Sbjct: 534 -----PLPARATLAYRLAADTWNGVTRVQLIVEHAA 564


>gi|293375179|ref|ZP_06621466.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter
           sanguinis PC909]
 gi|292646216|gb|EFF64239.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter
           sanguinis PC909]
          Length = 741

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 164/567 (28%), Positives = 270/567 (47%), Gaps = 30/567 (5%)

Query: 38  AIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            + D V ++++NR+++ +     FL+      + DP + +D  K+  RI +AI N E I+
Sbjct: 24  NLRDEVKQLILNRHLASEKSIDTFLSG--EGPLYDPFLFSDMKKSVDRINKAIENQEPIL 81

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I+GDYD DG    +++MR L       + YIP+R  +GYGPN     + I++G +LIITV
Sbjct: 82  IYGDYDADGVTGTSILMRALRGLGAIVDYYIPNRFYEGYGPNEDAFMQAISDGYKLIITV 141

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +           G+D+I+ DHHQ   E  P    +    LD       L  AGV  
Sbjct: 142 DNGISGLLEADILPPYGVDLIITDHHQ-PKECHPNAFSIIHPELDSSYPFHQLSGAGVAL 200

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
            +   +            +        + AL T+ DVVPLI  NR  V +GL   RR   
Sbjct: 201 KLAQALI----------GDGLSEEYFAIAALGTIGDVVPLIDENRYIVKRGLEAIRRTEL 250

Query: 277 PGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL AL+    I      E N+G+ I P +NA GR+ E+ L   LLISDD  E  ++A +
Sbjct: 251 CGLNALMNEAKIDKSEVDEVNVGFEICPRLNAPGRMDEAALAVELLISDDEMEAALIATQ 310

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395
           ++  N  R+ +   +L+QA   +  +   ++   V+++    WH GI+G++A RL + + 
Sbjct: 311 IESFNLERQKVTQKVLDQASTLMTPK--QLEDKKVVLLYQPNWHEGILGIVAGRLSKLWQ 368

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455
           +  F ++ + DG   GS R++EG+ +         E ++ + GGHA+AAG+T+   N   
Sbjct: 369 KAVFVLTDDHDGFVKGSARAVEGYHL--FDLLNQNEDLIERFGGHALAAGITLAPENIQP 426

Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
           L D         +  +   P+ ++D  L+   +++ L++ L    PYG GN  PV     
Sbjct: 427 LEDKLN----ADLRGIKIQPMQRVDLNLSLEKIDLELVEDLAVLAPYGEGNRPPVIGIEQ 482

Query: 516 HKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
            K+++I+ +     HL+ T   +  + L AIAF          +  +        G + +
Sbjct: 483 VKVKNIKAIGNKLQHLKFTIYDEAHQ-LDAIAFNKADL----MIYLTPDTLFDFIGEIKI 537

Query: 574 NYWRGSKRCQLRVLDASPVEGHHFAKK 600
           N W G++  Q  V+D    E      +
Sbjct: 538 NEWNGNRTLQFHVMDVKCDEFQLLDLR 564


>gi|284048852|ref|YP_003399191.1| single-stranded-DNA-specific exonuclease RecJ [Acidaminococcus
           fermentans DSM 20731]
 gi|283953073|gb|ADB47876.1| single-stranded-DNA-specific exonuclease RecJ [Acidaminococcus
           fermentans DSM 20731]
          Length = 782

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 170/587 (28%), Positives = 272/587 (46%), Gaps = 33/587 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
           +    +    +   + ++  I  ++A +LV R+++  +  K+FL         DP  L D
Sbjct: 6   IRRTDEAREPQIRTLCRELGISPLLAGILVRRDLTEPEKVKEFLEGK-TQPYYDPFRLKD 64

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            D+A  RI+QA+   E + I+GDYDVDG ++ +L+  FL       ++Y+P R  +GYG 
Sbjct: 65  MDRAVDRILQALQQGEPMTIYGDYDVDGTSASSLLYLFLQARGAKVDVYVPRRDREGYGL 124

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N   +EK    G +L+ITVD G +    +  A  +G+D+I+ DHH    +  PA A+VNP
Sbjct: 125 NGPALEKIAARGTKLLITVDTGISGAQVVADA-PKGLDIIITDHHLAPRQLPPALAVVNP 183

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N+  D      +   GV F +       L Q      +     L++LVAL TV D+VPL 
Sbjct: 184 NQPGDEYPFKGIAGVGVAFKLCQA----LEQRRTGQPDLYWDELIELVALGTVADMVPLQ 239

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGPSINAGGRIGESNL 316
             NR  V KGL        PGL+ALI       S I +  +G+ +GP INA GR+ ++  
Sbjct: 240 DENREIVRKGLARMPHSPLPGLQALIHVTVAPGSAINSGTIGFGLGPRINAAGRLDDAMT 299

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
             +LL + D +  + LA +L+  NQ R+ +   + E+AE ++  Q         +V+  +
Sbjct: 300 AVKLLTARDPETAKELAEELNSANQERQALSQKIFEEAERQLAKQG---PPEWSLVLGEE 356

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WHPG++G++A+R+ EK+  PS  +S + +    GS RSI   D+ + +        LV+
Sbjct: 357 GWHPGVIGIVASRMTEKYHLPSVLLSIDGE-TAKGSCRSIPPLDLYQALDRC--RDHLVQ 413

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS-AVNIALIDM 495
            GGHA AAGLT+         + F +    ++      P    D  +     +    +  
Sbjct: 414 FGGHAQAAGLTIRTAEIPAFREAFARVVAEMLDHKPYEPAAVPDWFVPEDREITPEAVAQ 473

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L    P+G GNP PV  F   ++Q + ++   H  + F  +         FR  G    E
Sbjct: 474 LAQMEPFGVGNPAPVLGFAKAQIQEVSLLGRDHNHLKFLLKQG------GFRYKGLLWQE 527

Query: 556 ---FLMQSRGKRMHVTGHLCVNYWRGSKRCQLR---------VLDAS 590
              F     G+   V     VN +RG     L          ++D  
Sbjct: 528 GPRFHSFYPGEVAAVAFSPRVNTFRGVTAVDLEVSAVEAPYTIIDWR 574


>gi|113867191|ref|YP_725680.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia eutropha
           H16]
 gi|113525967|emb|CAJ92312.1| Single-stranded-DNA-specific exonuclease RecJ [Ralstonia eutropha
           H16]
          Length = 565

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 172/580 (29%), Positives = 261/580 (45%), Gaps = 25/580 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              + Q     A ++     +   +AR+L  R V+       L   +  L+P P  +   
Sbjct: 3   RIAIRQYSPEHASSLA-AAGLHPTLARILAARGVARA---AELATDLPELVP-PAAMKGI 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG  
Sbjct: 58  GHAAAYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGARVEYIVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++     +   +I+TVD G  S D +  A   GIDV+V DHH   SE   A  +VNPN
Sbjct: 118 PEIVALAARQQPDVIVTVDNGIASVDGVAAANALGIDVVVTDHHLPGSELPQAAVIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPL 256
           +        +L   GV+F VL+ +   LRQ           L +LLDLVAL TV DVV L
Sbjct: 178 QPGCEFPSKNLAGVGVMFYVLLALRAELRQRGVYTQATQPPLQTLLDLVALGTVADVVKL 237

Query: 257 IGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
              NR  V +GL   R  R               ++     +LG+ +GP +NA GR+ + 
Sbjct: 238 DTNNRILVAQGLRRMRAGRMQPGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADM 297

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIV 372
           +LG   L+++D+     +A +LD +N+ RR +E+ M ++A   +       D      + 
Sbjct: 298 SLGIECLLTEDANRAWEIAQELDSMNRERRDIEAGMQQEALQILEQPLAGPDPSARFTVS 357

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430
           V  D WH G++G++A+RLK+KF RP+   +  ++    GSGRSI GF +   +       
Sbjct: 358 VFNDTWHQGVIGIVASRLKDKFHRPTITFAPGDETTVKGSGRSIPGFHLRDALDLVSKRH 417

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+L+K GGHAMAAGLTV    F    + F+      +       V + DG +     + 
Sbjct: 418 PGMLLKFGGHAMAAGLTVRAERFAEFQEAFEAVGREWLTDDQLARVIETDGDIEDQCFSP 477

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
             + +LE    +G G P P F      +    V+   HL++    + S+ L AI F    
Sbjct: 478 EFVTLLEQ-QVWGQGFPAPTFCGE-FDVLRQSVLKGKHLKLQL-GRGSQRLDAIWFNHAD 534

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    S G    V   L  N + G  R QL +  A 
Sbjct: 535 ---------SLGASAQVAYRLDNNTFNGVTRVQLVIEHAQ 565


>gi|260892285|ref|YP_003238382.1| single-stranded-DNA-specific exonuclease RecJ [Ammonifex degensii
           KC4]
 gi|260864426|gb|ACX51532.1| single-stranded-DNA-specific exonuclease RecJ [Ammonifex degensii
           KC4]
          Length = 865

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 176/581 (30%), Positives = 282/581 (48%), Gaps = 39/581 (6%)

Query: 18  WVSLLGQEGINRALAI-TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           W+    Q     A A+  ++  I  ++A++L+NR V +++ A  FLN  +  L P P  +
Sbjct: 4   WIPFPQQP---LACALWARELGIDPVLAQILLNRGVKTLEEADFFLNGRLAQLPP-PGKM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134
            D ++A +RI  A+ N EKI+++GDYD DG  +  L++  L H        ++P R  DG
Sbjct: 60  KDLERAVKRIRSAVANQEKILVWGDYDADGITATVLLVSVLKHLGAEEVTYHLPTR-ADG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG     +     +G  L++TVDCG  + +  +     G+D+I+ DHH+   E   A+A+
Sbjct: 119 YGLKGDFLRAAKEQGVSLVLTVDCGVKASEEARLCKLMGLDLIITDHHEPSDELPEAWAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R D       L   GV F +   + R   +             LD+VAL TV DV+
Sbjct: 179 INPRRPDCPYPFKELAGVGVAFKLATALSREAAE-----------EWLDVVALGTVADVM 227

Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           PL+G NR  V +GL +       PGL  L+     S P+T   L +++ P +NA GRIG+
Sbjct: 228 PLVGENRVLVREGLKLFNSSRLRPGLAGLLSAAGASLPVTVRTLSFVLAPRLNAAGRIGD 287

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            ++ +R L++   +E E  + KL+ LN+ R+  E+A L++A+  +L +      + V+VV
Sbjct: 288 PDVAARCLLA-VEEEAEQWSRKLEELNRERQRWENACLKEAD--LLAKRAREASSRVLVV 344

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           E   W  G+ GL+A RL   +  P+F I   E   G GSGR+ E F++ + +S A     
Sbjct: 345 EASDWPVGLTGLIAQRLHSLYQLPAFVI-VWEGEVGRGSGRADESFNVYQALSHASPY-- 401

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGHA A G T+ R +F       +++A N+ P          D VL    +   L+
Sbjct: 402 LLDYGGHAGAGGFTLTRESFPHFVASLEEYARNLPPDRTYHACRYFDAVLELEKLTPRLM 461

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551
           + L    P+G GNP P       ++  +R V     HL++    Q    L+ +AF   G 
Sbjct: 462 EELGRLEPFGPGNPPPRLVAQGVEVVEVRRVGKEEEHLRLRLR-QGRACLEGVAFGRGGE 520

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            L           + +     +N   G    +L++LD  P 
Sbjct: 521 ELPRL--------VDLVFEPSINELTGQ--PELKILDWWPA 551


>gi|161524329|ref|YP_001579341.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans ATCC 17616]
 gi|189350915|ref|YP_001946543.1| single-stranded-DNA-specific exonuclease [Burkholderia multivorans
           ATCC 17616]
 gi|160341758|gb|ABX14844.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans ATCC 17616]
 gi|189334937|dbj|BAG44007.1| single-stranded-DNA-specific exonuclease [Burkholderia multivorans
           ATCC 17616]
          Length = 565

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 183/581 (31%), Positives = 274/581 (47%), Gaps = 30/581 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
             +        A A+  +H +  ++AR+  +R V S    +     ++  L+P P  L  
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAAALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH       PA A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPPARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV
Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   LI+DD      LA +LD +N+ RR +E+ M +QA A +     D   A  I 
Sbjct: 297 DMSLGIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACSIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428
           +   +WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +     
Sbjct: 355 LFNPKWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  +LV  GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
               + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F  
Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNR 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                   L         +   L  + W G  R QL V  A
Sbjct: 532 TEPLPASAL---------LAYRLVADTWNGVTRVQLIVEHA 563


>gi|326693132|ref|ZP_08230137.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc
           argentinum KCTC 3773]
          Length = 653

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 177/598 (29%), Positives = 288/598 (48%), Gaps = 33/598 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72
           S   W  L  Q        +T +  I  + A ++  +  +   A   +L PSI  L  DP
Sbjct: 2   SQNNWRLLP-QPVEKTVRQLTSQLNIAQLTATIVAQKGYTTPEAAFAYLQPSIDQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           + L D DKA  R++ A +  EKI+++GDYD+DG  S A+M+  L     +   YIP+R  
Sbjct: 60  MQLHDLDKALERLMTAAFEGEKIVVYGDYDLDGVTSTAVMLEALQVLGADVTAYIPNRFQ 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN +  ++ I +GAQ+I+TVD G + ++A+ YA +QG+DVI+ DHH++      AY
Sbjct: 120 DGYGPNLAAYQRLIADGAQVIVTVDNGVSGHEAVAYAMSQGVDVIITDHHEMGPTLPDAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +       L   GV F +   +      +     +   + +LDLVAL  + D
Sbjct: 180 AIVHPRHPEGDYPFTDLSGVGVAFKLAQALLT--DGEPVQDKSELPMEMLDLVALGEIAD 237

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310
           +V L   NR  V  GL        PG+ AL++        PI +E +G+ + P +NA GR
Sbjct: 238 MVSLTDENRTLVSWGLKQMAESPRPGIAALLKSAGQLPEQPIISETVGFKLAPRLNAVGR 297

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G++ L   LL++    +   LA +++ +N  R+ +   +   A+   L+         V
Sbjct: 298 LGDAQLALDLLLTQSPDDATALAPQVEAINAQRQEIVEEVFGAAKQLALSDAYA--NDQV 355

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV GD WH GI+G++A+RL E   +P   +S  + G   GSGR+   FD+  ++     
Sbjct: 356 LVVAGDDWHQGILGIVASRLVELIHKPVIVLSLVD-GTYKGSGRTYGDFDLYALMG--QY 412

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGHA A GL +   N   L +        ++P         ++ +L  + +  
Sbjct: 413 RDLYDTFGGHASALGLGISPANLAILRERLSSLPALVIP----EKQVAVNMMLPVNQLAP 468

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            L D L+   P+G  NP PVF F   K++    +     H+++T  +Q    ++A+ F  
Sbjct: 469 TLYDALKLMEPFGTDNPEPVFGFQTPKIEKAMTMGAAQQHVKLTLANQ----IEAVGFNH 524

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS---PVEG----HHFAK 599
                   + Q  G  +     L +NY+RG  + QL + D +   PVE       FA+
Sbjct: 525 PD--WTRIVQQPTG--VSFAATLGLNYFRGQAKLQLLLADVALPEPVENTAHKQFFAQ 578


>gi|325110877|ref|YP_004271945.1| exonuclease RecJ [Planctomyces brasiliensis DSM 5305]
 gi|324971145|gb|ADY61923.1| exonuclease RecJ [Planctomyces brasiliensis DSM 5305]
          Length = 599

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 172/587 (29%), Positives = 283/587 (48%), Gaps = 23/587 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W       G      +  +     ++A+VL++R       AK+F++  +  L   P  
Sbjct: 3   RTWQFSSHDTG--LVSTLASQMRCSTLLAQVLMSRGFRDATAAKEFVSARLSALQE-PET 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    +AA RIV A+    +I I+GDYDVDG  S +++++ L      A+ YIP R+ +G
Sbjct: 60  LPGAVQAAERIVAAVQAGRRITIYGDYDVDGMTSTSILLQCLHAAGATADYYIPCRLEEG 119

Query: 135 YGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YG N   + +    +  +L++TVDCG  S +  + A   G+++++ DHHQ   +   A  
Sbjct: 120 YGLNCDAIRELHQADPERLVVTVDCGIASLEEAKLAKELGLELVITDHHQFGEQLPEAEV 179

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVC 251
           LV+P  + D      LC AGV F +   I + L   +     +   L S + L  + TV 
Sbjct: 180 LVHPRIVPDADCFPELCGAGVAFKLAWAICQQLGDGKRASNRMRDFLKSAVGLATIGTVA 239

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGG 309
           DVVPL+G NR  V  GL   ++Q   GL+AL+        S +T+E++G+ + P +NA G
Sbjct: 240 DVVPLVGENRMLVKYGLQTLQQQATIGLQALMAVSGLRDKSALTSEDIGFGLAPRLNAAG 299

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G++ L   LL++ D+Q    LA  LD LN+ R+ +E  +L+QA+ +V    +      
Sbjct: 300 RLGQARLAVELLVTTDTQRAAQLAEYLDGLNKQRQTVERKILKQAKEQVEAH-ESWADDP 358

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFA 428
           V+V+    WHPG++G++A+R+ E + +P+  I+     G G GSGRS  GF++ K +  A
Sbjct: 359 VLVIAHHDWHPGVIGIVASRVAEIYEKPTLLITLGTGHGFGQGSGRSYAGFNLHKAMLEA 418

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNAS 486
                L K GGH  A GL +   N           A            P   ID  +  +
Sbjct: 419 --GHTLEKFGGHPAAVGLKIAEGNIEDFRTAINDAARKQQGGGDEELAPRL-IDSEVALN 475

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQA 543
            +++  I  L+  GP+G  N  P+F     +L    R +     HL +    Q   +++A
Sbjct: 476 ELSVKAIQELDFLGPFGCQNERPIFVSTGVELAEPPRTMGEGGRHLSLQVR-QFGHSMRA 534

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +AF        E L    G  + +     +N +RG +  +L+++D  
Sbjct: 535 VAFGRGD--WAEQLAACEG-TLALCFKPNINEFRGRRNVELQLIDWK 578


>gi|171322225|ref|ZP_02911071.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria MEX-5]
 gi|171092450|gb|EDT37796.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria MEX-5]
          Length = 565

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 181/581 (31%), Positives = 274/581 (47%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAPLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +      
Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT+   +  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         +   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 564


>gi|293531073|ref|ZP_06671755.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus M1015]
 gi|290920341|gb|EFD97407.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus M1015]
          Length = 757

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQDHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A    +  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|49483880|ref|YP_041104.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425760|ref|ZP_05602184.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428420|ref|ZP_05604818.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431058|ref|ZP_05607437.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433744|ref|ZP_05610102.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436659|ref|ZP_05612703.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus M876]
 gi|282906042|ref|ZP_06313897.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908955|ref|ZP_06316773.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282914441|ref|ZP_06322227.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924734|ref|ZP_06332402.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958396|ref|ZP_06375847.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293503514|ref|ZP_06667361.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510532|ref|ZP_06669238.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus M809]
 gi|295428211|ref|ZP_06820843.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590821|ref|ZP_06949459.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49242009|emb|CAG40707.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271454|gb|EEV03600.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275261|gb|EEV06748.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278261|gb|EEV08903.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281837|gb|EEV11974.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284010|gb|EEV14133.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313569|gb|EFB43964.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus C101]
 gi|282321622|gb|EFB51947.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus M899]
 gi|282327219|gb|EFB57514.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331334|gb|EFB60848.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|283790545|gb|EFC29362.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|291095180|gb|EFE25445.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466896|gb|EFF09416.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128569|gb|EFG58203.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575707|gb|EFH94423.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus MN8]
 gi|315195538|gb|EFU25925.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 757

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A    +  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|282911272|ref|ZP_06319074.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282324967|gb|EFB55277.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|312437897|gb|ADQ76968.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 757

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A    +  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|227484947|ref|ZP_03915263.1| single-strand DNA-specific exonuclease [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237102|gb|EEI87117.1| single-strand DNA-specific exonuclease [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 576

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 176/589 (29%), Positives = 283/589 (48%), Gaps = 30/589 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
            W     ++     L +     I  + A +L NR++ S      +LNPS+  L  DP +L
Sbjct: 3   NWFLYNKKQNYINNLKLG---NITKLDALILGNRDIISPSKVDMYLNPSLSKLH-DPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   I+  + N  +I IFGDYD DG ASV  +M  L     N +  IP R+ +GY
Sbjct: 59  NDMDKAVELIIDTMKNGGEIRIFGDYDQDGIASVMTLMDGLLFYYDNISYDIPHRVDEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  + +K I +   L+IT D G T ++ +    N GI+VIV DHHQ+  EE       
Sbjct: 119 GISSKMSDKAIEDKVSLVITCDNGITGFEQIDNLKNAGINVIVTDHHQIHKEENDEWLNQ 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A++NP RLD       LC AGV F ++  +Y+ L  D+       L SLL+ VA
Sbjct: 179 ILPNADAVINPKRLDSTYPFDDLCGAGVSFKLIQGLYQKLDGDDYY-----LYSLLEYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCD+V L   NR +V++GL         GLKAL++       +    LG+++GP +N
Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRLNETEKIGLKALLDEAGWDKDVDEYTLGFILGPLMN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           + GR+  + L   LLI +D  ++  +A  L  LN  R+ +      +    +     D  
Sbjct: 294 STGRLKSAKLAIDLLIEEDIDKIYDMASDLVKLNNERKSLTETAFNKIIELIKENSYD-- 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMV 425
           +  VIVV     +  I G++A R+KEK+ RP+  ++  +E+G   GSGRSI  +++    
Sbjct: 352 KDDVIVVYAPDINESICGIVAGRIKEKYYRPTIILTNAKEEGIAKGSGRSIPAYNM--FE 409

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             +  +  L   GGH MA GL+++     +   F  +  ++ + +        ID  +  
Sbjct: 410 QISPYDDKLESFGGHPMACGLSIKIDEIDKFRIFLNR--NSKLTSTDKEQSINIDTQIPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAI 544
           S +++   + L+   PYG  N  P+FA     + +I ++      +     Q+     AI
Sbjct: 468 SKLSLEFAESLDRFKPYGKDNSRPIFANKGVDIAAISMIGKDKNTLRLSLFQNGNYYNAI 527

Query: 545 AFRVYGTP---LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F+          +F     GK++ +  +  VN +RG++  QL++LD  
Sbjct: 528 KFQAEDDYNYLKEKFDGDILGKKIDIVYYPDVNEFRGNRTLQLKLLDIR 576


>gi|282904216|ref|ZP_06312104.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus C160]
 gi|282595834|gb|EFC00798.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus C160]
          Length = 757

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A    +  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|258448793|ref|ZP_05696905.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A6224]
 gi|257858071|gb|EEV80960.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A6224]
          Length = 757

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 160/588 (27%), Positives = 284/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDFAMNEQQILDYR 568


>gi|22298786|ref|NP_682033.1| putative single-strand DNA-specific exonuclease
           [Thermosynechococcus elongatus BP-1]
 gi|22294967|dbj|BAC08795.1| tll1243 [Thermosynechococcus elongatus BP-1]
          Length = 775

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 161/587 (27%), Positives = 278/587 (47%), Gaps = 24/587 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPD 71
           +   RW+        + A  + +       +A + + R ++   A + FL P    L P 
Sbjct: 23  LPQQRWLLPPIDPECHDA--LRRALGCHPSLAEIYLRRGLTTPTAVRAFLEPETLELPPP 80

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
             +  D D A   + +AI   +K+ I GDYD DG  S AL++R L H   + +  IP R+
Sbjct: 81  NAVFPDLDLAVELLQRAIARGDKMTICGDYDADGMTSTALLLRALRHLGADIDYEIPSRM 140

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++++  + G +LI+TVD G  +   +  A   G+ VIV DHH V  +  PA
Sbjct: 141 HEGYGINERIVQECYDRGVKLILTVDNGIAALHPILKARELGLTVIVTDHHDVPPQLPPA 200

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A++NP  +   S    L   G+ +++ V + + L           +  L +L  L T+ 
Sbjct: 201 HAILNPKLVPPTSPYHTLAGVGMAYILAVSLAQRLG-----NWRPLVRPLRELCTLGTIA 255

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI----SSPITAENLGYMIGPSINA 307
           D+ PL G+NR +V +GL         G++AL++         + +    +G+ +GP INA
Sbjct: 256 DLAPLTGVNRRWVKQGLQTLPTSSLVGVQALMQVAGCLPEQDASLKPTAVGFRLGPRINA 315

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GRIG+  +   LL +DD    + LA   +  N+ R+ + +A+  +A A +     D QQ
Sbjct: 316 IGRIGDPQVVIELLTTDDPDRAQELAALCEATNRRRQDLCAAIEAEAIAHLEETDFDPQQ 375

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             V+V+    WH G++G++A+RL E++G P F  ++E +    GS RSI  F + + +  
Sbjct: 376 EWVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYENETIIRGSIRSIPEFHVFEALEA 435

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              + +L+K GGH  A G ++   +     D  + FA   +      P+  +D  ++   
Sbjct: 436 --TKDLLLKYGGHKAAGGFSLRAEHLAAWRDRLRAFAQTCLKPEDLRPLVTLDAEISFEQ 493

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545
           +       +E   P+G+ NP P+F     K+     +     HL++T E Q+ + + A A
Sbjct: 494 LTWDFYTQVEQLQPFGSENPQPMFCSRGVKILEQTPMGQQGEHLKLTLE-QNGQQMTAKA 552

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +R      G FL      R+ +  HL  + W G  + +L +    P 
Sbjct: 553 WR-----WGPFL--PLPTRVDIAYHLTAHTWHGETQLELELKGVKPS 592


>gi|221198421|ref|ZP_03571467.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans CGD2M]
 gi|221208902|ref|ZP_03581899.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans CGD2]
 gi|221171185|gb|EEE03635.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans CGD2]
 gi|221182353|gb|EEE14754.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans CGD2M]
          Length = 565

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 183/581 (31%), Positives = 272/581 (46%), Gaps = 30/581 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
             +        A A+  +H +  ++AR+  +R V S    +     ++  L+P P  L  
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAAALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH       PA A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGEALPPARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV
Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   LI+DD      LA +LD +N+ RR +E+ M +QA A +     D   A  I 
Sbjct: 297 DMSLGIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACSIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +     
Sbjct: 355 LFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  +LV  GGHAMAAG+T+   N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLLVAFGGHAMAAGVTLNTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
               + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F  
Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNR 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                   L         +   L  + W G  R QL V  A
Sbjct: 532 TEPLPASAL---------LAYRLVADTWNGVTRVQLIVEHA 563


>gi|300173020|ref|YP_003772186.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887399|emb|CBL91367.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 654

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 178/581 (30%), Positives = 281/581 (48%), Gaps = 26/581 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72
           S   W  L  Q        +T K  I  + A V+  +  ++ + A  +L PSI  L  DP
Sbjct: 2   SQNNWHILP-QPTEKTVRQLTTKLNIDPLTATVVAQKGFITPEAAYQYLQPSIDQLH-DP 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           ++L D DKA  R+ +A +  EKI+++GDYD+DG  S A+M+  L     +   YIP+R  
Sbjct: 60  MLLHDMDKAFERLTEAAFGGEKIVVYGDYDLDGMTSTAVMVEALEVLGADVTAYIPNRFK 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN  + ++ I EGAQ+I+TVD G + ++A+ YA +QG+DVI+ DHH++      AY
Sbjct: 120 DGYGPNIDVYKRLIAEGAQIIVTVDNGVSGHEAVAYAMSQGVDVIITDHHEMPPTLPEAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   D       L   GV F V   +       +    +     +LDLVAL  + D
Sbjct: 180 AIVHPRHPDGHYPFDDLSGVGVAFKVAQALLT--DGQSITDKSELPTEMLDLVALGEIAD 237

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310
           +V L   NR  V  GL        PGL AL++      + PI +E + + I P +NA GR
Sbjct: 238 MVSLTDENRTLVSWGLKQINDNPRPGLVALLKNAGQMVNQPIISETVSFKIAPRLNAVGR 297

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G++ L   LL+S DS E   +A +++ +N  R+     +   A+   L+         V
Sbjct: 298 LGDAQLALDLLLSQDSDEATEIASQIEAINAQRQEFVEEVFGAAKQIALSDKHA--NDQV 355

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV G+ WH GI+G++A+RL E   +P   +S  + G   GSGR+   FD+ +++     
Sbjct: 356 LVVAGENWHQGILGIVASRLVELLHKPVIVLSLID-GIYKGSGRTYNNFDLYQLMG--QY 412

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
                  GGHA A GL +   N   L +         VP +       ++ +L  S + I
Sbjct: 413 RSFYDTFGGHASALGLAISPENLSALREQLAVLPTLDVPEIS----VAVNMMLPVSKMAI 468

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            + + L    P+G GN  P F      ++    +     HL++T  +Q    ++A+ F  
Sbjct: 469 PVYEGLTLLEPFGTGNVQPTFGVQEPTIEKAVTMGSTNQHLKLTLANQ----IEAVGFNH 524

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                    + +    +     + +NY+RG KR QL + D 
Sbjct: 525 PEW----TTIVAHPANISFVATMGLNYFRGKKRLQLLLTDV 561


>gi|206560550|ref|YP_002231315.1| putative single-stranded-DNA-specific exonuclease [Burkholderia
           cenocepacia J2315]
 gi|198036592|emb|CAR52489.1| putative single-stranded-DNA-specific exonuclease [Burkholderia
           cenocepacia J2315]
          Length = 565

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 185/581 (31%), Positives = 275/581 (47%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARQPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        HL   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      
Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT++  N  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         V   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564


>gi|303257508|ref|ZP_07343520.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderiales
           bacterium 1_1_47]
 gi|331000228|ref|ZP_08323912.1| single-stranded-DNA-specific exonuclease RecJ [Parasutterella
           excrementihominis YIT 11859]
 gi|302859478|gb|EFL82557.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderiales
           bacterium 1_1_47]
 gi|329572394|gb|EGG54047.1| single-stranded-DNA-specific exonuclease RecJ [Parasutterella
           excrementihominis YIT 11859]
          Length = 572

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 195/575 (33%), Positives = 283/575 (49%), Gaps = 30/575 (5%)

Query: 26  GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
             N   A+T +   P+ +AR L  R+V+     D+        M  P  L +C +A   I
Sbjct: 10  DRNVVQALTNR-GFPEPLARALAARHVTSPSDLDYEFKE----MLSPWDLKNCREAGEAI 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK 144
             AI+  +KI+I GDYD DGA +V++ +  L      N +  IPDR  DGYG +P L+++
Sbjct: 65  ADAIWKQKKIVIIGDYDCDGATAVSVGILGLQALGAFNVSYLIPDRDKDGYGLSPQLVDR 124

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
               GA+LIITVD G +S  A+++A   GI+ +V DHH    E  P   +VNPN+  D  
Sbjct: 125 AAAAGAELIITVDNGISSVAAVEHAKTLGIEAVVTDHHLPGDEI-PDTLVVNPNQRGDTF 183

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRA 262
               L   GV+F VL+ +   LR     P     +L  L+DLVAL TV DVVPL   NR 
Sbjct: 184 PSKSLAGVGVIFYVLIAVRSALRAKGAYPNGKQPNLQHLIDLVALGTVADVVPLDRNNRI 243

Query: 263 YVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
            V KGL   R        +  L      +  I+A +LGY++GP INA GR+   N G   
Sbjct: 244 LVSKGLDSIRAGKMQPGVSALLSVAGKNAHRISANDLGYILGPRINAAGRLDSINKGVEC 303

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L S D       A +LD +N  RR  E +M   A   +  Q   +  ++ IV++GD WH 
Sbjct: 304 LTSYDYNTALFYAKELDQINAERRNREVSMQSDAI--LSLQTISVDDSNSIVLKGDDWHA 361

Query: 381 GIVGLLAARLKEKFGRPSFAISFEE---DGKGIGSGRSIEGFDIGKMVSFAVE--EGILV 435
           GI+GL+A+R+KE+  RP  A +  E   +    GSGRSI G  +   +    +   G+++
Sbjct: 362 GIIGLVASRIKEQTYRPVIAFAPSEENGEHVLKGSGRSIPGIHLRDALDRVSKLSPGLIL 421

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGHAMAAGLT+ +  F    + F +    +    +       DG L AS  NI L++ 
Sbjct: 422 KFGGHAMAAGLTIRKDAFDEFKELFARAVKELSDPEMFERNIVTDGELRASDFNIELVEA 481

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           +     +G   P P+FA    K+ S RV+   HL+++ E  D   +QAI FR        
Sbjct: 482 IRK-HVWGQAFPEPLFANQ-FKVLSQRVLKDQHLKLSLEV-DGREIQAIWFRH------- 531

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              +     + +   L +N +RG +  QL +    
Sbjct: 532 --KRELPPTVRLAYKLDINDFRGRQSVQLIIEGME 564


>gi|78066891|ref|YP_369660.1| RecJ exonuclease [Burkholderia sp. 383]
 gi|77967636|gb|ABB09016.1| exonuclease RecJ [Burkholderia sp. 383]
          Length = 565

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 189/582 (32%), Positives = 276/582 (47%), Gaps = 32/582 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
           V+          LA   +H +  ++AR+  +R V S    +     ++  L+P P  L  
Sbjct: 5   VTRPVAPADAEVLA---RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAASLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254
           N+   +    HL   GV+F VL+ +   LR+            L  LLDLVAL TV DVV
Sbjct: 177 NQPGCVFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R        A + R       TA   +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I 
Sbjct: 297 DMSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +     
Sbjct: 355 LFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGKRVKGSGRSIPGFHLRDALDLVSK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  ++V  GGHAMAAGLT++  N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLIVAFGGHAMAAGLTLDTENVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
               + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F  
Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNH 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              PL E  +        V   L  + W G  R QL V  A+
Sbjct: 532 TE-PLPESAL--------VAYRLVADTWNGVTRVQLIVEHAA 564


>gi|82751234|ref|YP_416975.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           RF122]
 gi|82656765|emb|CAI81194.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           RF122]
          Length = 757

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 159/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W  +   E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLIKPTEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|293606106|ref|ZP_06688471.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter
           piechaudii ATCC 43553]
 gi|292815561|gb|EFF74677.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter
           piechaudii ATCC 43553]
          Length = 566

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 181/578 (31%), Positives = 273/578 (47%), Gaps = 27/578 (4%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
           L  +     A  I +   I  ++AR+   R V+         PS   L+P P  LT    
Sbjct: 6   LTTRPADLEACRILEASGIHPLLARLWAARGVTHPDQTRLAWPS---LLP-PAGLTHSAH 61

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           AA  +  AI + +K++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +P+
Sbjct: 62  AAGVLADAIQSGKKLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPA 121

Query: 141 LME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           ++E   +  +    +IITVD G  S D +  A + GI V++ DHH        A A+VNP
Sbjct: 122 VVELAVRHRSGKPDIIITVDNGIASVDGVAAANDAGIGVVITDHHLPGDTLPDALAIVNP 181

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
           N+        +L   GV+F +++ +   LR+      +    L +L DLVAL TV DVV 
Sbjct: 182 NQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVK 241

Query: 256 LIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R     PGL+AL              +LG+ +GP INA GR+ +
Sbjct: 242 LDANNRLLVTQGLQRMRSGRLQPGLRALFAVAGREPRSANGFDLGFALGPRINAAGRLAD 301

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   L +DD  +   +A +LD +N+ RR +E+ M EQA      +       + + V
Sbjct: 302 MSLGIACLTTDDEAQALEMARELDNINRERRTIEAEMREQAL--AAMEEPSASAGATVCV 359

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEE 431
               WH G+VGL+A+RLKEKF RP+ A +   D +  GSGRSI    +   +        
Sbjct: 360 FDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDALDLVSKRHP 419

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++ K GGHAMAAGLT+ R +F      F      +       PV + DG L +   N  
Sbjct: 420 NLIRKFGGHAMAAGLTLGRADFPAFAPAFDAAVRELTGRDTFEPVIETDGSLESGYANAE 479

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
           +  +L+    +GAG   P+F      +++ R+V   HL+++ E +  +   AI F     
Sbjct: 480 VAGLLQQ-QVWGAGFAAPLFLDE-FTVRNQRLVGEKHLKLSLE-RGHQRFDAIWFGHD-- 534

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                  QS  + +     L  N W G    QL +  A
Sbjct: 535 -------QSLPEHIQAAYRLEQNVWNGMVSVQLVIEHA 565


>gi|323440811|gb|EGA98520.1| single-strand DNA-specific exonuclease [Staphylococcus aureus O11]
 gi|323442840|gb|EGB00465.1| single-strand DNA-specific exonuclease [Staphylococcus aureus O46]
          Length = 757

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 159/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W  +   E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLIKPTEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEVKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSETTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|226227295|ref|YP_002761401.1| single-stranded-DNA-specific exonuclease [Gemmatimonas aurantiaca
           T-27]
 gi|226090486|dbj|BAH38931.1| single-stranded-DNA-specific exonuclease [Gemmatimonas aurantiaca
           T-27]
          Length = 599

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 177/579 (30%), Positives = 291/579 (50%), Gaps = 21/579 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RWV+   Q        +     +P+ V R+LVNR    +D AK FL P +  +   P  L
Sbjct: 20  RWVTAP-QPAHEAVAQLCSALLLPESVCRLLVNRGYADVDAAKRFLRPRLEHI-ESPWRL 77

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134
            D ++A  RI +A+ + E I + GDYDVDG +S AL+ R L      +   ++P+R+ DG
Sbjct: 78  HDAERAVTRIAEAVRSQETIFVHGDYDVDGMSSTALLTRVLRDLGAHHVVPFVPNRLTDG 137

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           Y   P+ +      GA+L+IT DCG++++ A+      GIDVIV DHH       PA+A+
Sbjct: 138 YDLGPAGVRAAQAAGARLVITCDCGTSAHAAVAELMTAGIDVIVTDHHLPGHGMPPAFAV 197

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            NP      S    L A GV + + + +  +      +         LDLVALAT+ DV 
Sbjct: 198 CNPRHPACQSADKDLAAVGVAYKLALALCEVFAVSPNIAHRQ-----LDLVALATIADVA 252

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL G NR +V  GL +     +PGL+AL+    +   P+TA  +G+++ P +NA GRI +
Sbjct: 253 PLRGENRVFVRYGLKLLAETTHPGLRALMRSSGLDAKPLTAGRVGFVLAPRLNAAGRIAD 312

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + LG +LL+++   E  ++A +L+ LN+ R+ ++  +L+ A  +V  +   ++     V+
Sbjct: 313 ARLGLQLLLAEREDEANVIARELEELNRARQELDRTVLDDAMRQV--ESPAMRDQVGFVL 370

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+R+ E   RP+  ++  EDG G GSGRSI  FD+   +       +
Sbjct: 371 SREGWHAGVIGIVASRIVEHTARPAVLVA-VEDGVGKGSGRSISAFDLHAGLGAC--ADL 427

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             + GGH  AAGLT++        + F   A   + A    P  ++D  ++  AV   L 
Sbjct: 428 FQRYGGHRAAAGLTMDAAQLPAFAERFDAVARAQLSADDLVPELRVDLDVSIHAVGEELE 487

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            ++    P+G GNP+P F     +L +  R V    L+++ ++    TL+ I + +    
Sbjct: 488 KLVRHFEPFGIGNPSPTFRADGVRLAAPTRRVGTDGLRISVDTTGG-TLEGIGWGLA--- 543

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                     +   +   L  + +RG  R QL++ D   
Sbjct: 544 -ARMPRLDVSQAYDMAFRLERDEYRGVSRLQLKLTDVRV 581


>gi|253732292|ref|ZP_04866457.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724081|gb|EES92810.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 757

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 286/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA++
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAII 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +  +   +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--IEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|283470912|emb|CAQ50123.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 757

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 159/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKAIDRIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSILPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|325479379|gb|EGC82475.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 576

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 181/589 (30%), Positives = 280/589 (47%), Gaps = 30/589 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
            W     +E       I     I  + A +L NR++        ++NPS+  L  +P  L
Sbjct: 3   NWFIYNKRENYINNSKIE---GITKLDALILGNRDIVDPKLVDMYINPSLNKLH-NPYDL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +A   I++ I  + +I IFGDYD DG ASV  ++  L     N +  IP R+ +GY
Sbjct: 59  PDMTEAIDIIIETIQENGEIRIFGDYDQDGIASVMTLLDGLLFYYDNISYDIPHRVDEGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  + +K I +   L+IT D G T +D ++     GI VIV DHHQ++ E+       
Sbjct: 119 GISSGMSDKAIEDKVSLVITCDNGITGFDQVKKLKENGIKVIVTDHHQIEKEDKDGWVDQ 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A  ++NP+RLD       LC AGV F ++  +Y  L  D        L SLL+ VA
Sbjct: 179 ILPDADCVINPHRLDSKYPFKDLCGAGVSFKLMQALYMKLDGD-----FEYLASLLEYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCD+V L   NR +V++GL          +K L+E    +  I    LG++IGP +N
Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRLNITEKYAIKVLLEEAGWNKQIDEYTLGFIIGPLMN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  + L   LLI +D   +  LA +L  LN  R+ +    L++ +  V     D  
Sbjct: 294 ATGRLSTAKLAIELLIEEDMDRIRQLAKELVELNNTRKNLTQEGLDKCDKLVKDNSFD-- 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMV 425
           ++ VIVV        I G++A R+KEK+ RP+  ++   EDG   GSGRSIE +++ K +
Sbjct: 352 KSDVIVVYEPSIDESICGIVAGRIKEKYYRPTIVLTKSAEDGILKGSGRSIETYNMHKAI 411

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                E  L   GGH MA GL+++         F      + +       V  ID  +N 
Sbjct: 412 --LPFEDNLESFGGHPMACGLSIKDDMVDDFRHFLNS--QSKLTKNDLEEVINIDTQINI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAI 544
           S +++   + L+   P+G  NP PVFA  +  +  I+++      M     Q+     AI
Sbjct: 468 SKLSLEFAEKLDKYRPFGKDNPRPVFANKSVDIADIQMIGKDKKTMRINLHQNGRYFNAI 527

Query: 545 AFRVYGTPLG---EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F           +F    +G ++ +  +  VN +RG+K  QLR++D  
Sbjct: 528 KFNAVDDYEYLKLKFNNNIKGNKIDIVYYPDVNEFRGNKNLQLRLIDIR 576


>gi|86608310|ref|YP_477072.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556852|gb|ABD01809.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 890

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 174/643 (27%), Positives = 290/643 (45%), Gaps = 74/643 (11%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPD 71
           I   RW+          A ++ +   I  I+A++L+NR +S   A + +L P    L P 
Sbjct: 4   IPAQRWLFHP--VDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPP 61

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
                D   A   +  AI   E I I GDYD DG  S AL++R L       +  IP R+
Sbjct: 62  SRDFADLPLAVDLLDGAIRRQEPIAICGDYDADGMTSTALLLRALQD--APVHYRIPSRM 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N  ++++   EG +LI+TVD G ++++ +Q A   G+ VIV DHH +  +  PA
Sbjct: 120 TEGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKALGLTVIVTDHHDLPPQLPPA 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP +L   S    +   GV +L+   +    R D  +         L+L  + T+ 
Sbjct: 180 DAILNPKQLPVSSPYRGMAGVGVAYLLAQALAER-RGDGHLQRVA-----LELFTVGTIA 233

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAG 308
           D+ PL G+NR +V +GL +       G++AL++ + +      +  E +G+ +GP INA 
Sbjct: 234 DLAPLTGVNRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAV 293

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GRIG + +G +LL +DD  + E LA + + LNQ R+ M   +  +A  ++  Q  D+QQ 
Sbjct: 294 GRIGRARMGIQLLTTDDPLQAEKLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQE 353

Query: 369 SVIVV---EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-SIEGFDIGKM 424
            V+ +      RWH G++G++A+RL E+FG P F  S    G+  GS R  I  FD+ + 
Sbjct: 354 RVLTILGSPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSARQGIPEFDVFQA 413

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           + F   + +  K GGH  A G ++   ++    +  ++FA   +      P+ +ID  ++
Sbjct: 414 LEFC--KDLFTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVS 471

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD----- 537
            S + + L   L+   P G GNP PVF   N ++   +       HL++           
Sbjct: 472 LSDLTLDLYRELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQR 531

Query: 538 --------------SETLQAI---AFRVYGTPLGEFLMQ--------------------- 559
                           +  A+   ++   G  LG  L                       
Sbjct: 532 SHGLRATRTESSCPGRSDSAVKTSSYDTDGLSLGNALGNTLANGSAVGSTNPRPQRPLWA 591

Query: 560 ---------SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                       +R+ V   L    W+G  + +L ++   P +
Sbjct: 592 IRWRGAETHPLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQ 634


>gi|329767005|ref|ZP_08258533.1| hypothetical protein HMPREF0428_00230 [Gemella haemolysans M341]
 gi|328837730|gb|EGF87355.1| hypothetical protein HMPREF0428_00230 [Gemella haemolysans M341]
          Length = 753

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 149/577 (25%), Positives = 264/577 (45%), Gaps = 29/577 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
           + W+     E   +     + + I   VA++L  R+++     K + +        DP +
Sbjct: 5   YNWIYPTYDESFIKE---IESYNISKNVAKILNARSITDMSSVKKYFSDEYEEGY-DPFL 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA  RI +AI N EKI+++GDYD DG  S  L++  L     N + YIP+R  +G
Sbjct: 61  MHDMQKAVDRINEAIENEEKILVYGDYDADGITSTVLLVETLISLGANVSSYIPNRFEEG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN     K I  G  LIITVD G    + +  A   G DVI+ DHH+++     AYA+
Sbjct: 121 YGPNKEAFTKIIESGISLIITVDNGIAGVEEVDLANELGCDVIITDHHKIQDTIPNAYAI 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P   +       L   GV F +   +  I               LLDLVA+ T+ D+V
Sbjct: 181 IHPEHPEGNYPFKKLAGVGVAFKLAHALLEIFPD-----------FLLDLVAIGTIADMV 229

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            +   NR +V +GL +       GLK L+E  NI + +  + +G+ IGP +N+ GR+  +
Sbjct: 230 SITDENRIFVKQGLELINEDPRIGLKMLLELSNIDTKVDEQTIGFYIGPKLNSIGRMDSA 289

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            LG   L+++D++   +LA +++  N  R+ +   +++    ++            +++ 
Sbjct: 290 KLGLSFLMAEDAETARVLAEQIEKYNIERKQVTEDIVKDVIDQIENSSKKDNN---VLMI 346

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              +H G++G++A+ + EK+ RP F ++ +E G   GS RSI  F+I   ++      + 
Sbjct: 347 SGDYHEGVLGIVASNIVEKYQRPVFIMNNKE-GILKGSARSIFDFNIYTAMNK--ISDLF 403

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +  GGH +AAG + + +N  ++ +F                  KID V +   ++   ++
Sbjct: 404 LAFGGHTLAAGFSFDEINLDKIQEFLNCEYEKFKKNNELKSTKKIDIVTSLEEISYQFLN 463

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            LE   P+G     P     N  + +         +L++T   +    L+ I F      
Sbjct: 464 SLEILKPFGMDFEKPTVLLENAMVLNKSYFGSDNQYLRLTIADEVGN-LECITF----KD 518

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              F    +   + +   +  N + G  + Q  ++D 
Sbjct: 519 SVAFEKVEKNDIIDLLCTIDKNNFNGRTKLQAHIIDI 555


>gi|195978355|ref|YP_002123599.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975060|gb|ACG62586.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 736

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 164/592 (27%), Positives = 274/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S ++W     +        + Q   +    A+++ +R V + +    FL   +  L  DP
Sbjct: 4   SKYQWTIADKEPD-AGFFKLAQAKGLSQTAAKLIYDRGVHTEEELTSFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI QAI   E+I+++GDYD DG  + +++   L        +Y+P+R  
Sbjct: 62  YLLNDMEKAVHRIRQAIEGFERILVYGDYDADGMTAASIVKETLEMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G + ++A+ +A  QG+DVIV DHH + +E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEQVSLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHSLPAELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P           L   GV F +   +   +            +  LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPAAAYPFQKLAGCGVAFKLASALLETVP-----------VDFLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L++   +      E+ +G+ + P +NA GR
Sbjct: 231 DMVSLRGENRILVKNGLAVLKETERLGLQELMKLSEVDLTHFDEDVIGFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +EL  LA+ +   N+ R+ +   +  QA A V           V
Sbjct: 291 LDDPNPAIDLLTGFDDEELHELALMISSKNEERKALVQEIFAQAMAMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E+ G+    ++  E G   GS RS+E  +I    +    
Sbjct: 345 QVLAKSGWHPGVLGIVAGRIMEEIGQTVLVLTIAE-GLAKGSARSLESINI--FEALNSN 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGH  AAG+T+       L +   ++               ++  L+  A++I
Sbjct: 402 RSLFTAFGGHEGAAGMTLPSDRLEELSELLCQYVAAKGHDGQEKNTLLLNDELDLEALSI 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             ++ L    P+G  N  PVF   +  ++  R +     HL+    S+ +     +AF  
Sbjct: 462 DSLNKLLLLAPFGMDNKKPVFYLKDFTIKQARTIGQQQSHLKFKV-SKGAVEADVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               L +   QS+G  + +   L +N+WRG    QL ++DA       F  +
Sbjct: 521 G--HLIQEYQQSQG--LELAVSLAINHWRGHTSLQLMLVDARVTGVQLFDIR 568


>gi|225868314|ref|YP_002744262.1| single-stranded-DNA-specific exonuclease [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701590|emb|CAW98834.1| putative single-stranded-DNA-specific exonuclease [Streptococcus
           equi subsp. zooepidemicus]
          Length = 736

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 163/592 (27%), Positives = 273/592 (46%), Gaps = 32/592 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S ++W     +        + Q   +    A+++ +R V + +    FL   +  L  DP
Sbjct: 4   SKYQWTIADKEPD-AGFFKLAQAKGLSQTAAKLIYDRGVHTEEELTSFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D +KA  RI QAI   E+I+++GDYD DG  + +++   L        +Y+P+R  
Sbjct: 62  YLLNDMEKAVHRIRQAIEGFERILVYGDYDADGMTAASIVKETLEMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G + ++A+ +A  QG+DVIV DHH + +E    
Sbjct: 122 DGYGPNQSVYKYFIEQEQVSLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHSLPAELPEV 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P           L   GV F +   +   +            +  LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPAAAYPFQKLAGCGVAFKLASALLETVP-----------VDFLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310
           D+V L G NR  V  GL V +     GL+ L++   +      E+ +G+ + P +NA GR
Sbjct: 231 DMVSLRGENRILVKNGLAVLKETERLGLQELMKLSEVDLTHFDEDVIGFKLAPQLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + N    LL   D +EL  LA+ +   N+ R+ +   +  QA A V           V
Sbjct: 291 LDDPNPAIDLLTGFDDEELHELALMISSKNEERKALVQEIFAQAMAMVDL------DKPV 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+    WHPG++G++A R+ E+ G+    ++  E G   GS RS+E  +I    +    
Sbjct: 345 QVLAKSGWHPGVLGIVAGRIMEEIGQTVLVLTIAE-GLAKGSARSLESINI--FEALNSN 401

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +    GGH  AAG+T+       L +   ++               ++  L+  A++I
Sbjct: 402 RSLFTAFGGHEGAAGMTLPSDRLEELSELLCQYVAAKGHDGQEKNTLLLNDELDLEALSI 461

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
             ++ L    P+G  N  PVF   +  ++  R +     HL+    S+ +     +AF  
Sbjct: 462 DSLNKLLLLAPFGMDNKKPVFYLKDFTIKQARTIGQQQSHLKFKV-SKGAVEADVLAFGQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               L +   QS+G  + +   L +N+WRG    QL ++DA       F  +
Sbjct: 521 G--HLIQEYQQSQG--LELAVSLAINHWRGHTSLQLMLVDARVTGVQLFDIR 568


>gi|254433416|ref|ZP_05046924.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus oceani
           AFC27]
 gi|207089749|gb|EDZ67020.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus oceani
           AFC27]
          Length = 548

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 169/558 (30%), Positives = 268/558 (48%), Gaps = 25/558 (4%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +   R +    A D L+ ++  L P P +L++   A   +++A+    +I++  D+D DG
Sbjct: 1   MYGARGI---KAPDELDYTLERL-PSPWLLSNIKMAVTLLMEALVRDWRILVVADFDADG 56

Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITVDCGSTSY 163
           A S A+ +R L        +  +P+R + GYG  P+++ E        LIITVD G +S 
Sbjct: 57  ATSCAVAVRALRLMGAHKVDYLVPNRFIHGYGLTPAIVAEAMARGQPDLIITVDNGISSL 116

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
             +Q A    I V++ DHH        A A+VNPN  +D      L   GV+F V++ + 
Sbjct: 117 AGVQAARAANIRVLITDHHLPGISLPAANAIVNPNLPNDPFPSTCLAGVGVIFYVMLALR 176

Query: 224 RILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             LR+             L  LLDLVAL TV DVVPL  +NR  V +GL   R+      
Sbjct: 177 AHLREQGWFIRRDEQEPALAPLLDLVALGTVADVVPLDQINRILVAQGLARIRQSRCCAG 236

Query: 280 KA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
               +         +T  +LG+ +GP +NA GR+ + +LG   L++D  +  +  A +LD
Sbjct: 237 IQALVACARRPLETLTTSDLGFAVGPRLNAAGRLEDMSLGIACLLTDSLELAQQQANQLD 296

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV--IVVEGDRWHPGIVGLLAARLKEKFG 395
            LN+ RR +ES M EQA   +       ++ +     +  + WH G++GLLAAR++E+  
Sbjct: 297 GLNRERREIESTMQEQAVTHLENLVFQGEERAPLGYCLFDESWHQGVIGLLAARIRERVY 356

Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNF 453
           RP  A +  +  +  GS RSI G  I   +         +L K GGHAMAAGL++ R + 
Sbjct: 357 RPVIAFAPHDSEELKGSARSIPGLHIRDALDRVATCYPDLLTKFGGHAMAAGLSLRRGHL 416

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                 F +    ++       V   DG  +    ++ + + L + GP+G G P P+F  
Sbjct: 417 EPFRVAFLEVLETLLDKEALEDVILSDG--SLEQWDLEMAETLRNGGPWGQGFPEPLFDG 474

Query: 514 PNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
              ++   R+V  AHL++T  + D  + L+ IAFR            + G ++ +   L 
Sbjct: 475 -VFRVAGFRIVGEAHLKLTLTTLDGRQQLEGIAFRCLPPD-----GFALGIKIRLAYRLD 528

Query: 573 VNYWRGSKRCQLRVLDAS 590
           VN +RGS+  QL V    
Sbjct: 529 VNIYRGSRTAQLMVEHLE 546


>gi|298694915|gb|ADI98137.1| single-strand DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 757

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 284/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W  +   E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLIKPTEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDSLQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A    +  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSETTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|300088080|ref|YP_003758602.1| single-stranded-DNA-specific exonuclease RecJ [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527813|gb|ADJ26281.1| single-stranded-DNA-specific exonuclease RecJ [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 559

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 169/582 (29%), Positives = 277/582 (47%), Gaps = 30/582 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
           G RW              + + +  P ++ARV+ NR ++    A+ FL    R L+ DP+
Sbjct: 3   GARWQV----ADGAVPEDLGRAY--PGLMARVMANRGITTATEAELFLAGDAR-LVGDPM 55

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +L D   A  RI +AI   E ++++GDYD DG  + A+M+  L     NA+ YIP R+ +
Sbjct: 56  LLPDIQPAMTRIYRAILGHEAVVVYGDYDTDGITATAIMVTGLKRLGANASPYIPHRLSE 115

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG     ++K   EG  L+++VDCG  +   ++ A   GIDVI+ DHH    E  PA A
Sbjct: 116 GYGLKTDALKKMAAEGVSLVVSVDCGVNAVAEVKTAAKMGIDVIITDHHLPGHELPPAVA 175

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R D       L  AGV F V+  ++  + +             L+L AL T+ D+
Sbjct: 176 VINPKRPDSEYPFTELSGAGVAFKVVEALFHGMGKPLPQ------EHFLELTALGTIADI 229

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312
           +PL G NR  V +GL       +PGL  +I      +  + AE++ + + P +NA GR+ 
Sbjct: 230 MPLTGENRYLVKEGLKHLNDHPSPGLTEIINLSRLRTGQLDAESISWQVAPRLNAAGRLN 289

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +  G  LL +  + E   LA +L+  N  R+ +    + +A  +VL +       S++ 
Sbjct: 290 HAIAGYNLLTATSAGEAAELAAELEAQNIERQRLTLLYVNKARDRVLAE----PLKSLLF 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +E +    GI+GL+A RL ++F RPS  +  + +     S RSI GF+I   +       
Sbjct: 346 IEDEECPQGILGLVAGRLSDEFYRPSIVVRRDGE-LATASCRSIPGFNITAAIDRC--GH 402

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGHA AAG +++  +   L     + A   + +L   PV  ID       +   L
Sbjct: 403 LLAHYGGHAQAAGFSLKPKDLPELAMMLGEIAERELASLDLQPVLHIDAEAMLKELGGGL 462

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
             ML+   P+G GN  P+F          R +     HL+M   +Q     +AIAFR   
Sbjct: 463 FQMLQRLAPFGQGNRPPLFVSRCVTAAGYRTIGASGDHLKMRL-TQGGVVWEAIAFRQAA 521

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 +++     + +  +L ++ + G +  +L ++D +P 
Sbjct: 522 R-----MLEILPDPLDIVYNLEMDRFNGRETLRLNIVDFAPS 558


>gi|323464273|gb|ADX76426.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus
           pseudintermedius ED99]
          Length = 761

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 148/589 (25%), Positives = 276/589 (46%), Gaps = 25/589 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           S F+W +   ++ ++    + +++ +  ++  +L ++  +       +  + +  M +P 
Sbjct: 4   SKFQWQTDTNRQSMDDV--LVEQYKLTPLMRYILESKGYTEATQLAQVLSASKDNMHNPS 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +++D DKA +RI  AI N EKI+++GDYD DG  S  +M++ L         YIP+R  +
Sbjct: 62  LMSDMDKAVKRIHTAIQNQEKILVYGDYDADGVTSTTIMVKTLQQLGAIVGWYIPNRFTE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGP+    +   +EG  LIITVD G   +  ++   N G+DVIV DHH++      AYA
Sbjct: 122 GYGPSEPAFKNAYDEGVSLIITVDNGIQGHTEIEMVQNLGVDVIVTDHHEIGDTLPAAYA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       LC AGV   +   +         VP  F +        + T+ D+
Sbjct: 182 IVHPMHPDYDYPFISLCGAGVALKLAQSLL------GDVPNIFWI-----YAMIGTIADL 230

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           V L   NR  V  GL +        + A++ +   +  +T E +G++IGP +NA GR+ +
Sbjct: 231 VSLTDENRFIVQHGLQLLNESPPVSIAAILNQAQFNDTVTEETIGFIIGPRLNAVGRLDD 290

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L + LL++DD++E   LA +++  N  R+ +   ++++A           +    +V+
Sbjct: 291 AALAAELLMTDDAEEALFLAEQVEHFNVERKDIVQTIVDEAMVMAEDAIQAGE--HFLVL 348

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+R+ E F  P+  ++  +  +    G S     +    + + ++ +
Sbjct: 349 AKEDWHEGVLGIVASRIVETFHLPTMVLN-IDHEQQHAKGSSRSITQVSMFEALSSQQTL 407

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH MAAGLT+       L +    +    +      P+ K+D  ++   + +  I
Sbjct: 408 ISKFGGHHMAAGLTLPIDQVSALREGLNDWMRTHIDTTALQPIQKVDVTIDVGHITVEQI 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             +E   P+G     P+       +   + +     HL+MTF  Q+   LQA+ +     
Sbjct: 468 QSIERLRPFGTDFKRPIIQVNGLTVLQSKGIGQQQAHLKMTFVEQN---LQALFWNQGAL 524

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      + + VTG L +N W G++  Q+ + D    E      +
Sbjct: 525 S----SELMPNQHVDVTGELQINEWNGNRTAQMVLTDMKSNERQILDYR 569


>gi|221214767|ref|ZP_03587736.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans CGD1]
 gi|221165306|gb|EED97783.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           multivorans CGD1]
          Length = 565

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 182/581 (31%), Positives = 272/581 (46%), Gaps = 30/581 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
             +        A A+  +H +  ++AR+  +R V S    +     ++  L+P P  L  
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAAALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S   ++ A  +GIDV++ DHH       PA A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLITDHHLPGEALPPARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV
Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRCRGAFASKAAEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   LI+DD      LA +LD +N+ RR +E+ M +QA A +     D   A  I 
Sbjct: 297 DMSLGIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACSIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +     
Sbjct: 355 LFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  +LV  GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
               + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F  
Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNR 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                   L         +   L  + W G  R QL V  A
Sbjct: 532 TEPLPASAL---------LAYRLVADTWNGVTRVQLIVEHA 563


>gi|302333309|gb|ADL23502.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 757

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/588 (27%), Positives = 284/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLKENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|253996978|ref|YP_003049042.1| single-stranded-DNA-specific exonuclease RecJ [Methylotenera
           mobilis JLW8]
 gi|253983657|gb|ACT48515.1| single-stranded-DNA-specific exonuclease RecJ [Methylotenera
           mobilis JLW8]
          Length = 566

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 163/588 (27%), Positives = 273/588 (46%), Gaps = 34/588 (5%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
            SIS                +   Q   +  +++R+L  R VS           +  L+P
Sbjct: 2   TSISQRN--------VPAAIVQSLQASGVSPLMSRLLSARGVSDIAQTSI---HLSALLP 50

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
            P  LT     A+ + +AI  ++K+++ GDYD DGA + A+ ++ L     N +  +P+R
Sbjct: 51  -PQQLTHNQAMAKLLAEAIQANKKLLVVGDYDADGATATAVAVKGLRLFGANVDFLVPNR 109

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
              GYG  P +++    +   +I+TVD G  S D +  A   GI V++ DHH   ++   
Sbjct: 110 FEYGYGLTPEIVKLAATQAPDVIVTVDNGIASVDGVATANAMGIQVLITDHHLPGAQTPE 169

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALA 248
           A  +VNPN+        +L   GV+F  L+ +   LR+          +L  LLDLVAL 
Sbjct: 170 AACIVNPNQHGCTFPSKNLAGVGVMFYCLLGLRAELREQGAYQSSAEPNLTELLDLVALG 229

Query: 249 TVCDVVPLIGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           TV D+V L   NR  V +GL   R     +     L       +   A++LG+ +GP +N
Sbjct: 230 TVADLVKLDENNRILVEQGLRRIRAGACSHGVSALLRVAGREPAKAAAQDLGFYVGPRLN 289

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+ +  LG + L+++  ++  +LA +L  LN+ RR +E+ M E A   V      I 
Sbjct: 290 AAGRLDDMTLGIQCLLAETEKDAVVLAQQLHDLNKQRRSIEADMQESAN--VSLDEIAIA 347

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
               I +    WH G++G+LA+R+KE+  RP  A +    G   GSGRSI G  +   + 
Sbjct: 348 DQYSISIYEPDWHQGVIGILASRIKERHHRPVIAFADGGSGLLKGSGRSIAGLHLRDALD 407

Query: 427 FA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                   +++K GGHAMAAGLT++  +F      F+    +++  +    V ++DG L+
Sbjct: 408 LLSKHLPDLILKFGGHAMAAGLTIKAEDFNVFKMGFEAVVKSLLTEVDLEAVLEVDGSLS 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE---SQDSETL 541
           +  +  A+   LE+   +G G P P+F     ++ + R++   HL+++     S  +  +
Sbjct: 468 SGEMTYAVAQTLEN-QVWGQGFPPPLFYDE-FEVVNQRILAEKHLKLSLRALASPSAAVI 525

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            AI F                 ++     L  N + G ++ QL +   
Sbjct: 526 DAIYFNQTEF---------LDSQIQAAYQLQTNSYNGVQKVQLNIRHV 564


>gi|194289275|ref|YP_002005182.1| ssdna exonuclease, 5'--> 3'-specific, mg-dependent [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223110|emb|CAQ69115.1| ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent [Cupriavidus
           taiwanensis LMG 19424]
          Length = 567

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 171/582 (29%), Positives = 259/582 (44%), Gaps = 27/582 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              + Q     A A+     +   +AR+L  R V+       L   +  L+P P  +   
Sbjct: 3   RIAIRQYSPEHASALA-ATGLHPTLARILAARGVARA---AELATDLPELVP-PAAMKGI 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI   ++++I  DYD DGA + A+ +R L          +P+R   GYG  
Sbjct: 58  GHAAAYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGARVEYIVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++     +   +I+TVD G  S D +  A   GIDV+V DHH   +E   A  +VNPN
Sbjct: 118 PEIVALAAKQNPDVIVTVDNGIASVDGVAAANALGIDVVVTDHHLPGAELPQAAVIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPL 256
           +        +L   GV+F VL+ +   LR+           L +LLDLVAL TV DVV L
Sbjct: 178 QPGCEFPSKNLAGVGVMFYVLLALRAELRRRGVYTQQTQPPLQTLLDLVALGTVADVVKL 237

Query: 257 IGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
              NR  V +GL   R  R               ++     +LG+ +GP +NA GR+ + 
Sbjct: 238 DTNNRILVAQGLRRMRAGRMQPGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADM 297

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT----QCDDIQQASV 370
           +LG   L++DD+     +A +LD +N+ RR +E+ M ++A   +                
Sbjct: 298 SLGIECLLTDDANRAWEIAQELDSMNRERRDIEAGMQQEALRILEQPMAGLAGADASRFT 357

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA-- 428
           + V  D WH G++G++A+RLK+KF RP+   +  +D    GSGRSI GF +   +     
Sbjct: 358 VSVFNDTWHQGVIGIVASRLKDKFHRPTITFAPGDDTTVKGSGRSIPGFHLRDALDLVSK 417

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
              G+L+K GGHAMAAGLTV    F    + F+      +       V + DG +     
Sbjct: 418 RHPGMLLKFGGHAMAAGLTVRAERFAEFQEAFEAVGREWLTDDQLARVIETDGDIEDQCF 477

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           +   + +LE    +G G P P F      +    V+   HL++    + S+   AI F  
Sbjct: 478 SPEFVSLLEQ-QVWGQGFPAPTFCGE-FDVLRQSVLKGKHLKLQL-GRGSQRFDAIWFNH 534

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      S G    V   L  N + G  R QL +  A 
Sbjct: 535 AD---------SLGASAQVAYRLDNNTFNGVTRVQLVIEHAQ 567


>gi|291166509|gb|EFE28555.1| single-stranded-DNA-specific exonuclease RecJ [Filifactor alocis
           ATCC 35896]
          Length = 769

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/578 (27%), Positives = 281/578 (48%), Gaps = 27/578 (4%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W+    +  I       +   +   ++ ++ NR +  +  ++FLNP       DP ++  
Sbjct: 5   WMERNDKTYIGEVD---EGLGL---LSAMIKNRGI--EDVEEFLNPD-EDSFIDPYLMKG 55

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            D+   R+  A+ + EKI+IFGDYDVDG +S +++ R+         +YIPDR  +GYG 
Sbjct: 56  MDETVTRLQFAMAHKEKIVIFGDYDVDGVSSTSILFRYFEEIGYEVGVYIPDRRKEGYGL 115

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N   +    + G  LIITVDCG ++   +       +D+I+ DHHQ   +   AYA++NP
Sbjct: 116 NEEAIVHLKDLGYDLIITVDCGISAIKEVDLCNQLKMDIIITDHHQCPEQLPKAYAILNP 175

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           ++ D       LC AG+   ++  +        K     +L+S L++ A+AT+ D+VPL+
Sbjct: 176 HQSDCSYPFKELCGAGIALKLVQAL--------KNSSITELMSYLEIAAVATIADLVPLL 227

Query: 258 GLNRAYVVKGLMVARRQG-NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
           G NR+ V  GL    +   N G++ LI+        IT+ N+G+ + P INAGGR+  + 
Sbjct: 228 GENRSIVKFGLNSINQNKLNLGIQVLIDVAQLKKQQITSYNVGFQLAPRINAGGRLDSAM 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G  LL +    E    A+ L+  N  R+L+E  MLE+A   + +  +  +  +VIVV  
Sbjct: 288 TGVLLLTTHSVDEAMRYAVILNEYNAQRQLIEQTMLEEAITMIESH-EKHRNNNVIVVYE 346

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             W+ G++G++++R+ E++G+PSF  S +E+G   GSGRSI  F +   +        ++
Sbjct: 347 KGWNEGVIGIVSSRITERYGKPSFVFSIDENGIAKGSGRSISDFHLFHALQE--ISDCML 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH+ AAGL++   N           +   +        F  D  L    +N+  ++ 
Sbjct: 405 GFGGHSQAAGLSIRVENLNIFEQNINFVSEKYLTNQSFKKKFFFDSELKEEYLNLDFLNK 464

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           ++   P+G  NP P+F   N +++ +  +            +  T+    F      L +
Sbjct: 465 VKQMEPFGIKNPTPLFLMKNVRIKQVGRIGKNQTHFR-GQLNRYTILGFDFG----ELSD 519

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            ++ +  K + +   +  N +R +   QL++ D   +E
Sbjct: 520 DILANSDKELDILCSIEENVYRDAVSLQLKLRDYKWIE 557


>gi|319955764|ref|YP_004167027.1| single-stranded-DNA-specific exonuclease recj [Nitratifractor
           salsuginis DSM 16511]
 gi|319418168|gb|ADV45278.1| single-stranded-DNA-specific exonuclease RecJ [Nitratifractor
           salsuginis DSM 16511]
          Length = 531

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/532 (29%), Positives = 255/532 (47%), Gaps = 32/532 (6%)

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
             FL  S++ L PDP    D ++A  RI +AI   EKI++ GDYDVDG +S A+M RF  
Sbjct: 24  DTFL--SLKDL-PDPYAFKDMERAVERIAEAIEKGEKIVLVGDYDVDGVSSTAIMRRFFE 80

Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177
              V     IP+R  DGYG +P+L  +   E A LI+TVD G  + +A +     GID+I
Sbjct: 81  ALGVPLEWVIPNRFRDGYGLSPTLFPRL--EHADLILTVDNGIAANEAAKLCKEAGIDLI 138

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237
           + DHH V      AYA+V+  + D       +C A + + +   + R L          D
Sbjct: 139 ITDHHIVPDTPPQAYAIVDQKQSDCGFPHREVCGAQIAWYLCAALNRRLG------AGID 192

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
           + +LL+L ALA + D++PL  +NRA V +GL +   + +          N    + AE++
Sbjct: 193 MKALLELTALAIIADIMPLQHINRAMVHQGLRLL-ERSHSPFIVAWRERNGKERLRAEDI 251

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
            + + P IN+ GR+ ++++    L +  SQE   L  +L   N+ R+ ME  + ++A+A+
Sbjct: 252 AFGLAPLINSAGRMEDASIACDFLCAPTSQEAHKLLERLQGFNERRKGMEENIFQEAQAQ 311

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
           +        +A + +  G+ WH G++G++AAR+  +F  P+  ++        GSGRS  
Sbjct: 312 I------DPEAPLAIAIGEEWHEGVLGIVAARIARRFEVPALVLTRSGAS-YKGSGRSFG 364

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
              + ++   A +  ++ K GGHA A GL+V     G      Q+ A +  P        
Sbjct: 365 SCHLYEL--LATQRSLMEKFGGHAAAVGLSVSEEKLGHWKQRLQEEALSRCPRESFADP- 421

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES 535
           +I G +    +   L  +LE   PYG GNP P F      ++S+RV+     H ++    
Sbjct: 422 EILGEIGFDLLGWELYRLLERFEPYGEGNPRPKFITRGVSVESLRVLGSEGQHFKVLLSD 481

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                 +AI FR    P         G R+ +   L  N + G    QL + 
Sbjct: 482 GTFRQ-EAIQFRCSALP-------ETGDRIDLVYTLNENRFNGRSTLQLLID 525


>gi|49486469|ref|YP_043690.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49244912|emb|CAG43373.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 757

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 285/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 +VA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKAIVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  +G++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQGLI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|330817651|ref|YP_004361356.1| Putative single-stranded-DNA-specific exonuclease [Burkholderia
           gladioli BSR3]
 gi|327370044|gb|AEA61400.1| Putative single-stranded-DNA-specific exonuclease [Burkholderia
           gladioli BSR3]
          Length = 564

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 178/582 (30%), Positives = 277/582 (47%), Gaps = 30/582 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
             +  Q     A A+  +H +  ++AR+   R V+  +  +     ++  L+P P  L  
Sbjct: 3   RLVTRQASPADAEALA-RHGLHPVLARLYAARGVTCPEDIET----ALARLVP-PASLKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C+ AA  +  A+   +++++  DYD DGA + A+ +R L     + +  +P+R   GYG 
Sbjct: 57  CEGAAVLLADALAARKRMLVVADYDCDGATACAVAVRGLRMLGASIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P +++       +L+ITVD G  S D +  A   GIDV+V DHH   +    A A+VNP
Sbjct: 117 TPEIVKLAAARRPELLITVDNGIASVDGVAAANALGIDVLVTDHHLPGATLPAARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV
Sbjct: 177 NQPGCEFPSKHIAGVGVMFYVLLALRAELRRRGAFDDARPEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R+                 +   +A +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRKGRMQPGIAALFRAAAREARSASAFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   L +DD      LA +LD +N+ RR +E+ M +QA A +     D  +A+ I 
Sbjct: 297 DMSLGIECLTTDDIGRAWELAQQLDTMNRERREIEAGMQQQALADLAQ--VDPAEAATIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +     
Sbjct: 355 LFNPDWHQGVIGIVAGRLKEKFHRPSFTFAHADESGARVKGSGRSIPGFHLRDALDLVSK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  +LV  GGHAMAAG+T+E     R    F+  A   +     + V + DG L  +  
Sbjct: 415 REPDLLVTFGGHAMAAGVTLETDKVPRFAAAFEAVAREWLSEEALSRVLETDGDLEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
               +++L+    +G G P P+F+    ++ S  +V   HL++   ++  +   AI F  
Sbjct: 475 TPQFVELLD-GAVWGQGFPAPLFSGE-FEVASQALVKDKHLKLQL-ARGRQRFGAIWFNH 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          R  V   L  + W G  R QL V  A+
Sbjct: 532 TE---------PLPARATVAYRLASDTWNGVTRVQLIVEHAA 564


>gi|291458408|ref|ZP_06597798.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418941|gb|EFE92660.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 616

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 179/587 (30%), Positives = 288/587 (49%), Gaps = 31/587 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W     +   +    +++K  I  +  R+L NR + + +  + FL+ S+  L    L+
Sbjct: 36  RDWYLYQKRADFS---ELSEKLGIDPVTVRILRNRELHTEEEIRSFLSASLSELPSP-LL 91

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  + A  + +A+   ++I I GDYDVDG  +  ++ R LS  S N +  IPDRI DG
Sbjct: 92  LPDAIRFANILNRALAEKKRIRIVGDYDVDGVCAAYILYRGLSALSENLDYEIPDRIRDG 151

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK------SEE 188
           YG N  ++ +   +G  LI+T D G ++ + L YA   GI V+V DHH +          
Sbjct: 152 YGINREIIRRAKEDGVGLILTCDNGISAREELSYAKELGIPVLVTDHHDIPRDSEGRELL 211

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             A A+V+P R         +C A V + +L+L+Y++     +       + LL   A+A
Sbjct: 212 PEALAVVDPKREGSRYPFPEICGAVVAWKLLLLLYQMKNIAEEEG-----MRLLPFAAIA 266

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSIN 306
           TVCDV+PL   NR  V  GL       NPGL+AL+ +  +S    + A +LG+++GP IN
Sbjct: 267 TVCDVMPLREENRILVKYGLQALSDPENPGLRALLSQSGLSGFSPLRAYHLGFVLGPCIN 326

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           AGGR+  +    RL +S+  +E E LA KL  LN+ R+ M     E+A  +   +    +
Sbjct: 327 AGGRLESAKTALRLFLSESPEEAEPLAQKLKELNEQRKAMTKQACEEAFRQAEEE---DE 383

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMV 425
             SV+++   + H  + G++A R++E++ RPSF ++  +E+G   GSGRSIEG+ +    
Sbjct: 384 SRSVLLLYLPKLHESLAGIVAGRVRERYYRPSFIVTRAQEEGMAKGSGRSIEGYPM--AD 441

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             A ++ +L + GGH MAAG ++       L     K A   +P         ID  +  
Sbjct: 442 KLAEQKELLERFGGHPMAAGFSLREDKIDALRSALNKDAE--IPPEKLKEKLWIDAAMPF 499

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           S V   LI  L    P+G GN  P FA    ++ S+RV+      ++    S +    +A
Sbjct: 500 SYVTEKLISELSRLEPFGKGNEKPRFAERALRILSVRVLGQKRNAVKFLLLSGEGRRAEA 559

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F      L E   +   + M +  +  ++ + G K  QL + D  
Sbjct: 560 ILFSDGDRFLRELGEK---RLMDIVYYPEIHEYNGRKSLQLIISDYR 603


>gi|319892689|ref|YP_004149564.1| Single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162385|gb|ADV05928.1| Single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 764

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 148/589 (25%), Positives = 276/589 (46%), Gaps = 25/589 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           S F+W +   ++ ++    + +++ +  ++  +L ++  +       +  + +  M +P 
Sbjct: 7   SKFQWQTDTNRQSMDDV--LVEQYKLTPLMRYILESKGYTEATQLAQVLSASKDNMHNPS 64

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           +++D DKA +RI  AI N EKI+++GDYD DG  S  +M++ L         YIP+R  +
Sbjct: 65  LMSDMDKAVKRIHTAIQNQEKILVYGDYDADGVTSTTIMVKTLQQLGAIVGWYIPNRFTE 124

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGP+    +   +EG  LIITVD G   +  ++   N G+DVIV DHH++      AYA
Sbjct: 125 GYGPSEPAFKNAYDEGVSLIITVDNGIQGHTEIEMVQNLGVDVIVTDHHEIGDTLPAAYA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D       LC AGV   +   +         VP  F +        + T+ D+
Sbjct: 185 IVHPMHPDYDYPFISLCGAGVALKLAQSLL------GDVPNIFWV-----YAMIGTIADL 233

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           V L   NR  V  GL +        + A++ +   +  +T E +G++IGP +NA GR+ +
Sbjct: 234 VSLTDENRFIVQHGLQLLNESPPVSIAAILNQAQFNDTVTEETIGFIIGPRLNAVGRLDD 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L + LL++DD++E   LA +++  N  R+ +   ++++A           +    +V+
Sbjct: 294 AALAAELLMTDDAEEALFLAEQVEHFNVERKDIVQTIVDEAMVMAEDAIQAGE--HFLVL 351

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++A+R+ E F  P+  ++  +  +    G S     +    + + ++ +
Sbjct: 352 AKEDWHEGVLGIVASRIVETFHLPTMVLN-IDHEQQHAKGSSRSITQVSMFEALSSQQTL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + K GGH MAAGLT+       L +    +    +      P+ K+D  ++   + +  I
Sbjct: 411 ISKFGGHHMAAGLTLPIDQVSALREGLNDWMRTHIDTTALQPIQKVDVTIDVGHITVEQI 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551
             +E   P+G     P+       +   + +     HL+MTF  Q+   LQA+ +     
Sbjct: 471 QSIERLRPFGTDFKRPIIQVNGLTVLQSKGIGQQQAHLKMTFVEQN---LQALFWNQGAL 527

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      + + VTG L +N W G++  Q+ + D    E      +
Sbjct: 528 S----SELMPNQHVDVTGELQINEWNGNRTAQMVLTDMKSNERQILDYR 572


>gi|238854729|ref|ZP_04645059.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii
           269-3]
 gi|282932880|ref|ZP_06338277.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii
           208-1]
 gi|238832519|gb|EEQ24826.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii
           269-3]
 gi|281302915|gb|EFA95120.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii
           208-1]
          Length = 753

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 150/574 (26%), Positives = 274/574 (47%), Gaps = 32/574 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W      E    +  + +K+ +  + A++   R ++ D   ++        + DP ++  
Sbjct: 3   WKKR---EATELSEELKEKYQLSPLAAKLFSLREINTDEKLNYWLNGTEEDLADPYLMHG 59

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +A  RI +AI N EKI I+GDYD DG  +  +M   L+    + + +IPDR  DGYGP
Sbjct: 60  MQEAVERINKAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N    ++ +++G +LIITVD G T  + ++YA   G DVIV DHH  + +   A  +V+ 
Sbjct: 120 NMKRYQQIVSDGTKLIITVDNGVTGIEEVKYAQENGCDVIVTDHHSFQEQMPDAKVIVHC 179

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N  +        C AGV + +   +           ++  +  L++L  + T+ D+V + 
Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRAL-----------MDDTMPELIELAMIGTIGDMVKVS 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316
           G     V +GL +      PGL+ALI+   +    I   ++G+ I P +NA GR+  ++L
Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDIGFQIAPRLNATGRLANASL 288

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL++DD +  + LA K++ LN +R+ +   + E A  ++     + +   V  +   
Sbjct: 289 AVDLLLADDLEVAQKLAKKVEQLNNDRKELTQKVYESALEQIKKFGYNSENTLV--LYDT 346

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++GL+A ++ EK  +P+  ++  ++G   GSGRS  GF++   +    ++ +   
Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTQNDEGLVKGSGRSNAGFNLFNALFKL-KDSLFEN 405

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A GL+++  N   L         N   A   T V   D  L+ + ++++++D +
Sbjct: 406 FGGHDFACGLSLKEENINPLRK----AFENSYQASSNTEVDYYDLDLDVNNIDLSILDDM 461

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           +  GP+G  NP PV+     ++ S+ V+      + F   +   L+ I F +       F
Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKSHLKFNVGN---LKVIGFNMA------F 512

Query: 557 LMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589
           L Q+    +     ++  N W+     Q ++   
Sbjct: 513 LTQNLLSYVTAIYLNIGKNMWQKKLSLQGQLKAI 546


>gi|91763259|ref|ZP_01265223.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717672|gb|EAS84323.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 564

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 170/579 (29%), Positives = 300/579 (51%), Gaps = 20/579 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           S+SG +W      + I     + Q++   + ++R++++R    D     +N  +   + +
Sbjct: 3   SVSGKKWEQKKINQNI--VDKLKQEYNFNEFLSRLIISRKFDNDEIAT-INADLD--LNN 57

Query: 72  PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
             +   D  ++   +V +I N+EKI I GDYDVDG+A+ +L ++F    +     YIPDR
Sbjct: 58  VFLNNKDFSQSINLVVNSINNNEKICIVGDYDVDGSAATSLFVKFFEGINHPFFYYIPDR 117

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             DGYG    L +K I +  +LII VDCGSTS DA+ +     I  ++IDHH++      
Sbjct: 118 EKDGYGATKKLFKKLILKNPKLIIMVDCGSTSNDAIDFLNENEIKSLIIDHHEINKPFPN 177

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A +++NP + +      +LCA  + +  L L+ + ++ +       ++   L  V LATV
Sbjct: 178 ANSIINPKKDNGYREYDYLCATTLTYFFLDLLIKKIKSE------INISDYLIYVLLATV 231

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+PL  LNR   +K L       N  +  L +     + I   +LGY+IGP +NAGGR
Sbjct: 232 CDVMPLRKLNRLIALKTLKNFDITKNLPIGTLFDLNEKKNRININDLGYLIGPILNAGGR 291

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G+S   + LL S++   +   +  L  LN  R+ +E+ +LE    ++  +  + +   V
Sbjct: 292 LGKSQYATELLSSNNDLVINDRSKSLIKLNDKRKKIENLILE----EIDFKKIEKENKDV 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I+      + G++G++AARLK+ F +PS  I+   +    GS RS+  ++IG+++  +++
Sbjct: 348 IIYYNPNINEGLIGIIAARLKDYFNKPSIVITASNE-LLKGSVRSVYNYNIGRVIKNSLD 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + +++ GGGH MAAG T+ R +     ++  +         +T  +F  +  +++ A N 
Sbjct: 407 QKLILNGGGHNMAAGFTLNRDSLKAFENYILEDFVK--SNTVTNNIFSYESEISSLAFNE 464

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
              D ++   P+G GNP P F     K+    V+N  H+ +  +S+   ++++I+F    
Sbjct: 465 DFYDNIKKLEPFGTGNPVPTFLLRRLKIIKPMVLNKKHISLNLKSKTGFSIKSISFNSIN 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T LGE+LM  + K + V G +  N W   K  QL + D 
Sbjct: 525 TKLGEYLMNYKNK-IDVIGQINENIWNNKKSNQLTIKDL 562


>gi|294055365|ref|YP_003549023.1| single-stranded-DNA-specific exonuclease RecJ [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614698|gb|ADE54853.1| single-stranded-DNA-specific exonuclease RecJ [Coraliomargarita
           akajimensis DSM 45221]
          Length = 570

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 168/584 (28%), Positives = 294/584 (50%), Gaps = 24/584 (4%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W ++       +   + +   +  ++  +LV R V   + A++F+ P + +L  +P  LT
Sbjct: 3   WNTIET--DSVQVENLCESLGVSKVLGTLLVQRGVDSVETAEEFMRPRLAML-DNPFALT 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + + A +RI  AI  +E +++FGDYDVDG  S   ++  L H  ++    +P R+ +GYG
Sbjct: 60  NLEAAVKRIELAIERTEDVVVFGDYDVDGVTSTVQLVSLLRHLGLDPRFCVPKRLEEGYG 119

Query: 137 PNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
            +   +++  +     L I +DCG+ +++ + Y    G++VIV+DHHQ K        LV
Sbjct: 120 LSREAIDRVFDGRVPNLFIALDCGTNAHEPIAYIRELGVEVIVVDHHQAKDAAPDDCLLV 179

Query: 196 NPNRLDDLS-GQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDV 253
           NP+  D        LC AG+VF +L  + ++ R+          L   LDLVA+ TV D+
Sbjct: 180 NPHVHDPKDAPWRDLCTAGLVFKLLHGLLKLRREAEDPRVETIQLKDYLDLVAMGTVADL 239

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRI 311
           VPL G NR     G+   R  G PG++AL E   I     + + ++ + IGP INA GR+
Sbjct: 240 VPLNGENRILAWFGIHHLRANGRPGVRALAEVSGIDATQDLVSSDISFRIGPRINASGRL 299

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++ L   LL+  DS+  + +A +LD +N+ R+ +E ++ E+AEA+   +  D   AS I
Sbjct: 300 ADAALPIELLLCSDSERCKQIAGELDTMNRERQAIERSIAEEAEARAEKEFAD---ASGI 356

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ G+ WHPG+VG++A+R+  +F +P+  +   E  +  GSGRS+EG ++ +        
Sbjct: 357 VLFGEDWHPGVVGIVASRVSRRFHKPAVILG-AEADQAKGSGRSVEGANLVEAFQCC--A 413

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH MAAG++++  N     + F      + P  +      I   L+ + ++  
Sbjct: 414 DLLGHWGGHPMAAGVSLDATNVPAFAERFVSALDELYPDGLPEASMDIAAWLDPADLSEE 473

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQD-SETLQAIAFRVY 549
           L+  L+   P+G  NP PVF       ++  +     + +    +     ++  +A+R+ 
Sbjct: 474 LLGELDRMHPFGQANPEPVFGMKGVVFETAPQPFGDGNFRFRLPAGGHGRSVSGVAWRMD 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             P         G  + +T     NYWR S+  Q+ V+D    +
Sbjct: 534 SVP-------QAGVPVDMTFRFAWNYWRNSRYPQITVVDWKIAD 570


>gi|331086135|ref|ZP_08335217.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406294|gb|EGG85808.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 571

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 171/574 (29%), Positives = 290/574 (50%), Gaps = 28/574 (4%)

Query: 30  ALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
              I QK  I  I+AR++ NR ++ +   + +LN +I  L  D +++ D D+A   + + 
Sbjct: 13  FQEIAQKFHISPILARLIRNREITDEEEIRLYLNGTIAELH-DGILMKDMDRAVEILSEK 71

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I   + I + GDYD+DG  +  +++  +       +  IPDR+ DGYG N  L+ + +  
Sbjct: 72  IREKKPIRVIGDYDIDGVNATYILLEGIEKLGGVVDSDIPDRMKDGYGLNQELINRALEA 131

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE---------IPAYALVNPNR 199
           G   IIT D G  + + + YA   G+ +IV DHH++  EE          PA A+V+P R
Sbjct: 132 GVDTIITCDNGIAAAEEIAYAKKMGMTIIVTDHHEIPYEEKNGEKVYELPPADAVVDPKR 191

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           +D       LC A V + ++  ++ ++ QD       D+  L++ VA+ATV DV+ L+G 
Sbjct: 192 IDCEYPFSSLCGAAVAYKLVETLFNVMGQD-----VEDVDYLMENVAIATVGDVMDLVGE 246

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGS 318
           NR +V +GL + +   N GL ALIE   +    ++A ++G++IGP +NAGGR+  +    
Sbjct: 247 NRIFVKQGLEMLKCTKNYGLDALIECTGVDRAHLSAYHIGFVIGPCLNAGGRLDTAKRAL 306

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            LL +   +E +MLA  L  LN +R+ M  A +E+A   V  +   +Q+  V+V+     
Sbjct: 307 ELLRASSRREADMLAGDLKALNDSRKEMTQAGVEEAVKMV--ETTALQEDKVLVIFLPDC 364

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H  + G++A R++E++ +P F ++  E G   GSGRSIE +D+ + +S    + +  K G
Sbjct: 365 HESLAGIIAGRIRERYHKPVFILTKAEQG-AKGSGRSIENYDMYEEMSKC--KALFTKFG 421

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH MAAGL++   N         +    ++          ID  +    V   L++ LE 
Sbjct: 422 GHKMAAGLSLPEENIEVFRRQMNE--KTVLTEEDFCEKVSIDMQMPLQYVTEELVEELEL 479

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G GN  PVF   +  + + R++      L+M  +      + AI F      L + 
Sbjct: 480 LEPFGKGNTKPVFVEKDMLVLNSRILGKNQNVLKMQVKDLGGTVMDAIYFGEAQECLEKI 539

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  G ++  T +  VN +RG K  Q+ + +  
Sbjct: 540 --RRAGGKITATYYPSVNEFRGQKTLQIVIQNYR 571


>gi|260663961|ref|ZP_05864814.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii SJ-7A-US]
 gi|260561847|gb|EEX27816.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii SJ-7A-US]
          Length = 753

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 150/574 (26%), Positives = 274/574 (47%), Gaps = 32/574 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W      E    +  + +K+ +  + A++   R ++ D   ++        + DP ++  
Sbjct: 3   WKKR---EATELSEELKEKYQLSPLAAKLFSLREINTDEKLNYWLNGTEEDLADPYLMHG 59

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +A  RI +AI N EKI I+GDYD DG  +  +M   L+    + + +IPDR  DGYGP
Sbjct: 60  MQEAVERINKAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N    ++ +++G +LIITVD G T  + ++YA   G DVIV DHH  + +   A  +V+ 
Sbjct: 120 NMKRYQQIVSDGTKLIITVDNGVTGIEEVKYAQENGCDVIVTDHHSFQEQMPDAKVIVHC 179

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N  +        C AGV + +   +           ++  +  L++L  + T+ D+V + 
Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRAL-----------MDDTMPELIELAMIGTIGDMVKVS 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316
           G     V +GL +      PGL+ALI+   +    I   ++G+ I P +NA GR+  ++L
Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDIGFQIAPRLNATGRLANASL 288

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL++DD +  + LA K++ LN +R+ +   + E A  ++     + +   V  +   
Sbjct: 289 AVDLLLADDLEVAQKLAKKVEQLNNDRKELTQKVYESALEQIKKFGYNSENTLV--LYDT 346

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++GL+A ++ EK  +P+  ++  ++G   GSGRS  GF++   +    ++ +   
Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTQNDEGLVKGSGRSNAGFNLFNALFKL-KDSLFEN 405

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A GL+++  N   L         N   A   T V   D  L+ + ++++++D +
Sbjct: 406 FGGHDFACGLSLKEENINPLRK----AFENSYQASSNTEVDYYDLDLDVNNIDLSILDDM 461

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           +  GP+G  NP PV+     ++ S+ V+      + F   +   L+ I F +       F
Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKSHLKFNVGN---LKVIGFNMA------F 512

Query: 557 LMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589
           L Q+    +     ++  N W+     Q ++   
Sbjct: 513 LTQNLLPYVTAIYLNIGKNMWQKKLSLQGQLKAI 546


>gi|170704154|ref|ZP_02894756.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria IOP40-10]
 gi|170130938|gb|EDS99663.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria IOP40-10]
          Length = 565

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 181/581 (31%), Positives = 273/581 (46%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAASLLADAIAGKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +      
Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT+   +  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         +   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLVVEHAA 564


>gi|116690137|ref|YP_835760.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           cenocepacia HI2424]
 gi|116648226|gb|ABK08867.1| exonuclease RecJ [Burkholderia cenocepacia HI2424]
          Length = 565

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 185/581 (31%), Positives = 272/581 (46%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        HL   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R        A + R       TA   +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      
Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT++  N  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         V   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564


>gi|325144128|gb|EGC66435.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M01-240013]
          Length = 590

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 46  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERKEKILI 101

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 102 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 161

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 162 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 220

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 221 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 280

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 281 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLAQDDAEAQEL 340

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 341 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 398

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 399 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 458

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 459 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 517

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 518 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 566

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  N WR +   QL +      
Sbjct: 567 YRLVANEWRNNLELQLYIDYWEAA 590


>gi|325134022|gb|EGC56677.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M13399]
          Length = 566

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLAQDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  N WR +   QL +      
Sbjct: 543 YRLVANEWRNNLELQLYIDYWEAA 566


>gi|121996931|ref|YP_001001718.1| single-stranded-DNA-specific exonuclease RecJ [Halorhodospira
           halophila SL1]
 gi|121588336|gb|ABM60916.1| exonuclease RecJ [Halorhodospira halophila SL1]
          Length = 578

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 174/566 (30%), Positives = 267/566 (47%), Gaps = 26/566 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +  ++ RV   R +        L+ S+R L P P  L D D+A R ++ A+   ++I++
Sbjct: 21  GLHPVLRRVYERRGLRDS---GELDLSLRRLQP-PSGLADLDRAVRALIPALRAGQRIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHC----SVN---ANMYIPDRIVDGYGPNPSLMEKFINEGA 150
            GDYD DGA + ALM+  L         +      ++PDR   GYG + +++E+      
Sbjct: 77  VGDYDADGATATALMVLALRRLAKAAGGDPAAIESFVPDRFSLGYGLSGAVVERLRPMEP 136

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
             ++TVD G TS + +  A   G+ V+V DHH        A A+V+P R DD      L 
Sbjct: 137 DWLVTVDNGVTSVEGVAAARQAGMGVVVTDHHAPGESLPAAEAVVDPLREDDHFPTTALA 196

Query: 211 AAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
             GV F + + + R L  D  +      LL LLDLVA+ TV D+VPL   NR  V +GL 
Sbjct: 197 GVGVAFYLALALRRGLEADGGLREETASLLELLDLVAVGTVADLVPLDHNNRILVEQGLR 256

Query: 270 VARRQ-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R     PG+ AL+E        +TA +L + +GP +NA GR+ +   G   L+ +D Q
Sbjct: 257 RIRAGVVRPGIVALLEVAGREPTEVTAADLAFAVGPRLNAAGRMDDMTAGVDCLLEEDPQ 316

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
                A  LD LN+ RR +E+ M E+A A +  Q +D+     + V    WH G+ G+LA
Sbjct: 317 RARERAAGLDGLNRQRREVEAQMTEEALASLEAQAEDVGLG--VCVAARGWHQGVTGILA 374

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAG 445
           +RLKE++ RP+ A +  + G+  GS RS+ G  +  +++   A    ++   GGHAMAAG
Sbjct: 375 SRLKERYHRPAVAFAPADGGRLRGSARSVPGLHMRDLLARIHARSPSLIECFGGHAMAAG 434

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+E          F     + +   +     + DG L    +N+     L   GP+G G
Sbjct: 435 LTIESGQLDAFRRAFAGALDDALGGELPKLRLETDGALAPEELNLETAWALRYGGPWGQG 494

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE--TLQAIAFRVYGTPLGEFLMQSRGK 563
            P P F     +++  + +   HL++   + D       AIAF                 
Sbjct: 495 FPEPCFDG-VFRIERAKELRGGHLRLELSNGDGTGPVFPAIAFGGVERGWDRLQGA---- 549

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDA 589
            +H      VN +RGS   QLR+   
Sbjct: 550 -VHAIYRPEVNRFRGSVELQLRIDYL 574


>gi|225175542|ref|ZP_03729536.1| single-stranded-DNA-specific exonuclease RecJ [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168871|gb|EEG77671.1| single-stranded-DNA-specific exonuclease RecJ [Dethiobacter
           alkaliphilus AHT 1]
          Length = 788

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 160/581 (27%), Positives = 265/581 (45%), Gaps = 30/581 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W              + +   +  + A  L  R V+  + A+ FL  S+  L  DP  + 
Sbjct: 8   WTVPEKNP---AVQQLAEALGLHRLTAACLTQRGVTTTEAARLFLAGSLSDL-GDPFKMA 63

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              KAA R+  A+   E ++I+GDYD DG  S AL+M  L    V+   YIP R+ DGYG
Sbjct: 64  GMAKAAERLALAVREREPVLIYGDYDADGVTSTALLMAVLQKLEVSVEYYIPSRLGDGYG 123

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            + S++E+F   G +L +TVDCG  S+  ++ A   G+D+IV DHH+    +  A+A++N
Sbjct: 124 LHGSVLEEFAGRGGKLAVTVDCGINSFAEMELAKELGLDLIVTDHHECFDGQRNAFAVLN 183

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P + +    + +L   GV + +   ++ +L          +    LDLVA+ ++ DVVPL
Sbjct: 184 PKQEECGYSERNLAGVGVAWNLARALHSLLGV-----PFAETAEYLDLVAVGSIADVVPL 238

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESN 315
           +G NR  V  GL     +  PGL AL    N+    ++A  + +++ P +NA GR+G++ 
Sbjct: 239 LGENRILVKYGLEKLSERPRPGLAALARVGNVGEQKLSATQVAFVLAPRLNAPGRLGDAA 298

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
                L++D++    +   +LD  N+ R+ +E        A+             +V+  
Sbjct: 299 PAVETLLADEADAEALA-HELDEKNRQRQQVEKD----ILAEARELAAAQADKPALVLWR 353

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           D WHPG+VG++A RL  +F +PS  ++ +      GS RS+ G D+   +    E   L 
Sbjct: 354 DTWHPGVVGIVAGRLASEFAKPSALVAVDGTQGN-GSIRSVPGCDVVDALQACTEH--LA 410

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH  AAGLTV+        + F +                 + VL   ++ +     
Sbjct: 411 RFGGHPEAAGLTVDTQCLEAFREAFCRAVATQKTKEEQRQQVAAEAVLAELSLELVEELA 470

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPL 553
             +  P+G GNP P+F   + ++ + R V     HLQM  ++        I F      +
Sbjct: 471 --ALEPFGQGNPEPLFLVRDVEVAAARRVGNNGKHLQMKLKN-GGPVYAGICFGGGEADI 527

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                 +RG ++        N W+G     L V D    + 
Sbjct: 528 ------ARGMQVDAVVFPTTNTWQGRTSLSLHVRDVRQAQA 562


>gi|268611135|ref|ZP_06144862.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus
           flavefaciens FD-1]
          Length = 675

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 161/589 (27%), Positives = 265/589 (44%), Gaps = 33/589 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
             W    G         +     +  + A  L  +  +  +   D LN      + DP +
Sbjct: 2   KNWTV--GVPDRKTVSGLVFGCQVSPLTAAALAAKGYTTPESVADSLNV---DGLSDPFM 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D D AA  I +AI N EKI ++GDYD DG  S  ++  +L     +   YIP+R  +G
Sbjct: 57  IKDMDIAAETINEAIDNEEKICVYGDYDCDGIMSTVILFSYLFEAGADVVYYIPER-SEG 115

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + ++K  ++G  LI+TVD G ++    +Y    G+ +++ DHHQ       A A+
Sbjct: 116 YGLNKNAIDKIRDDGVSLIVTVDNGISAISEAEYIYECGMKLVITDHHQQGDTLPRAEAI 175

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P+R D  SG  H+C AG+   +   +       +       +    DL A+ATV D+V
Sbjct: 176 VDPHRHDCPSGFKHMCGAGLALKLTAAL-------DGGDYTLAMEQFSDLAAIATVADIV 228

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V +G+ +      P L AL +        I + ++G+ + P INA GR G 
Sbjct: 229 SLTGENRFLVSEGMRLIDNTDRPALLALKKVCGLEDKEIDSTSIGFGLAPRINASGRFGS 288

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
               + L + +D  E   +A +LD LN  R+  E+ ++ +  A + +    I +  VI +
Sbjct: 289 PRTAAELFLCEDPDEALDIASELDKLNTMRKSAENDIISEISAMIDSD-PSIIRKRVIYL 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++AAR++E FG+P F  S  + G+  GS R+   F +    +       
Sbjct: 348 SGKNWHHGVIGIVAARIQEMFGKPCFIASETD-GEVRGSARAFGEFSV--FEALTYASDA 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGH  A G TV+     R  +  +++A      +        D  L  + +    +
Sbjct: 405 LSKFGGHPGAGGFTVKDGMTERFGELLEEYAAANHEIMPLL-SLSADSPLTPAELTFQNV 463

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-H--LQMTFESQDSETLQAIAFRVYG 550
           + L+   PYG GN  P+F   N ++  IR +    H  ++  F    +    A  FR   
Sbjct: 464 EDLKKLEPYGMGNEQPLFYIENAEITEIRPMGNGSHSMIKFKF---GTTEYNAKMFRTS- 519

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK 599
               + L   +G    +   L +N +RG++   + V D  P     F +
Sbjct: 520 ---PDMLPVGKGDPAKMIVTLGINEFRGNRSLDILVKDIRP---QMFEQ 562


>gi|327395062|dbj|BAK12484.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea ananatis
           AJ13355]
          Length = 503

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 172/507 (33%), Positives = 253/507 (49%), Gaps = 15/507 (2%)

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           M+ GD+D DGA S AL +  L      N    +P+R  DGYG +P ++E+    GA++I+
Sbjct: 1   MVVGDFDADGATSTALTVLALRSMGCSNVQYLVPNRFEDGYGLSPEVVEQARARGAEMIL 60

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S+  +  A   GI V+V DHH        A A+VNPN  D       L   GV
Sbjct: 61  TVDNGISSHAGVALAHQHGIAVLVTDHHLPGETLPDADAIVNPNLPDCHFPSRSLAGVGV 120

Query: 215 VFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
            F +++ +   LR            +L  LLDLVAL TV DVVPL   NR  V +GL   
Sbjct: 121 AFYLMMALRAHLRTQGWFGVTRSEPNLADLLDLVALGTVADVVPLDANNRILVWQGLSRI 180

Query: 272 RR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           R  +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL++DD  + 
Sbjct: 181 RAGKCRPGIKALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLTDDLSQS 240

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAA 388
            MLA +LD LNQ R+ +E  M  +A A      ++     +        WH G+VG+LA+
Sbjct: 241 RMLASELDALNQMRKEIEQGMQSEALALCQKLENEQTDLPLGLAFYHPEWHQGVVGILAS 300

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGL 446
           RLKE+F RP  A +   DG   GSGRSI G  +   +        G++ K GGHAMAAGL
Sbjct: 301 RLKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLHPGLMQKFGGHAMAAGL 360

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           ++E   +      F       +       V   DG L  +  ++   ++L  AGP+G   
Sbjct: 361 SLEEARYDEFRQRFADLVGEWLAGEALQGVIWSDGALQPAEFSLQTAEVLRDAGPWGQSF 420

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           P P F     +L   R+V   HL++  E  +    +  IAF V  T   +    S  +++
Sbjct: 421 PEPAFDGR-FRLLQQRLVGERHLKVMVEPLEGGPLIDGIAFNVDTTLWPD----SSVRQV 475

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +   L +N +RG++  QL +    P+
Sbjct: 476 ELAYRLDINEYRGNRSVQLIIEHLWPL 502


>gi|21283315|ref|NP_646403.1| hypothetical protein MW1586 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|297207644|ref|ZP_06924079.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911726|ref|ZP_07129169.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204755|dbj|BAB95451.1| MW1586 [Staphylococcus aureus subsp. aureus MW2]
 gi|296887661|gb|EFH26559.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885972|gb|EFK81174.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 757

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 157/588 (26%), Positives = 284/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 +VA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKAIVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|167903424|ref|ZP_02490629.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 564

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 180/574 (31%), Positives = 275/574 (47%), Gaps = 30/574 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
                A+  +H +  ++AR+   R + S    +     ++  L+P P  L  C +AA  +
Sbjct: 11  PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E  
Sbjct: 65  ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNPN+      
Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
             H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV L G NR 
Sbjct: 185 SKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRV 244

Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R        A + R    +  +A   +LG+ +GP +NA GR+ + +LG   
Sbjct: 245 LVAQGLQRIRNGRMQPGIAALFRAAARNARSASGFDLGFGLGPRLNAAGRLSDMSLGIEC 304

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L +DD      LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I +    WH 
Sbjct: 305 LTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQ 362

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVK 436
           G++G++A RLKE+F RP+F  +  +DG     GSGRSI GF +   +      E  ++V 
Sbjct: 363 GVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVT 422

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAG+T+E  N  R    F+  A   +       V + DG L  +     ++++L
Sbjct: 423 FGGHAMAAGVTLETANVPRFAAAFETVAREWLSDDALARVIETDGDLEDAYFTPQVVELL 482

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           + A  +G G P P+F+     + S  +V   HL++   ++  +   AI F          
Sbjct: 483 D-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL-TRGRQRFNAIWFNHAE------ 533

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  R  +   L  + W G+ R QL V  A+
Sbjct: 534 ---PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564


>gi|53719889|ref|YP_108875.1| putative single-stranded-DNA-specific exonuclease [Burkholderia
           pseudomallei K96243]
 gi|53723793|ref|YP_103318.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           ATCC 23344]
 gi|67642990|ref|ZP_00441740.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           GB8 horse 4]
 gi|76810184|ref|YP_334107.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1710b]
 gi|121599631|ref|YP_993517.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           SAVP1]
 gi|124384430|ref|YP_001029054.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           NCTC 10229]
 gi|126448803|ref|YP_001081025.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           NCTC 10247]
 gi|126452335|ref|YP_001066895.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1106a]
 gi|134277269|ref|ZP_01763984.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 305]
 gi|167000663|ref|ZP_02266474.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           PRL-20]
 gi|167739333|ref|ZP_02412107.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 14]
 gi|167816547|ref|ZP_02448227.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 91]
 gi|167824943|ref|ZP_02456414.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 9]
 gi|167846460|ref|ZP_02471968.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei B7210]
 gi|167895038|ref|ZP_02482440.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 7894]
 gi|167911674|ref|ZP_02498765.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 112]
 gi|167919674|ref|ZP_02506765.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei BCC215]
 gi|217420571|ref|ZP_03452076.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 576]
 gi|226195518|ref|ZP_03791106.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813008|ref|YP_002897459.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei MSHR346]
 gi|242317071|ref|ZP_04816087.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1106b]
 gi|254177621|ref|ZP_04884276.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           ATCC 10399]
 gi|254184375|ref|ZP_04890965.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1655]
 gi|254191409|ref|ZP_04897913.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195860|ref|ZP_04902286.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei S13]
 gi|254200275|ref|ZP_04906641.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           FMH]
 gi|254209351|ref|ZP_04915697.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           JHU]
 gi|254262003|ref|ZP_04953057.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1710a]
 gi|254297040|ref|ZP_04964493.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 406e]
 gi|254357977|ref|ZP_04974250.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           2002721280]
 gi|52210303|emb|CAH36282.1| putative single-stranded-DNA-specific exonuclease [Burkholderia
           pseudomallei K96243]
 gi|52427216|gb|AAU47809.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           ATCC 23344]
 gi|76579637|gb|ABA49112.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1710b]
 gi|121228441|gb|ABM50959.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           SAVP1]
 gi|124292450|gb|ABN01719.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           NCTC 10229]
 gi|126225977|gb|ABN89517.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1106a]
 gi|126241673|gb|ABO04766.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           NCTC 10247]
 gi|134250919|gb|EBA50998.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 305]
 gi|147749871|gb|EDK56945.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           FMH]
 gi|147750124|gb|EDK57195.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           JHU]
 gi|148027104|gb|EDK85125.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           2002721280]
 gi|157807498|gb|EDO84668.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 406e]
 gi|157939081|gb|EDO94751.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698660|gb|EDP88630.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           ATCC 10399]
 gi|169652605|gb|EDS85298.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei S13]
 gi|184214906|gb|EDU11949.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1655]
 gi|217395983|gb|EEC36000.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 576]
 gi|225932478|gb|EEH28477.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505572|gb|ACQ97890.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei MSHR346]
 gi|238524225|gb|EEP87659.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           GB8 horse 4]
 gi|242140310|gb|EES26712.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1106b]
 gi|243063469|gb|EES45655.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei
           PRL-20]
 gi|254220692|gb|EET10076.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 1710a]
          Length = 564

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 180/574 (31%), Positives = 274/574 (47%), Gaps = 30/574 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
                A+  +H +  ++AR+   R + S    +     ++  L+P P  L  C +AA  +
Sbjct: 11  PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E  
Sbjct: 65  ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNPN+      
Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
             H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV L G NR 
Sbjct: 185 SKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRV 244

Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R        A + R       +A   +LG+ +GP +NA GR+ + +LG   
Sbjct: 245 LVAQGLQRIRNGRMQPGIAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIEC 304

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L +DD      LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I +    WH 
Sbjct: 305 LTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQ 362

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVK 436
           G++G++A RLKE+F RP+F  +  +DG     GSGRSI GF +   +      E  ++V 
Sbjct: 363 GVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVT 422

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAG+T+E  N  R    F+  A   +       V + DG L  +     ++++L
Sbjct: 423 FGGHAMAAGVTLETANVPRFAAAFETVAREWLSDDALARVIETDGDLEDAYFTPQVVELL 482

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           + A  +G G P P+F+     + S  +V   HL++   ++  +   AI F          
Sbjct: 483 D-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL-TRGRQRFNAIWFNHAE------ 533

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  R  +   L  + W G+ R QL V  A+
Sbjct: 534 ---PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564


>gi|301632861|ref|XP_002945498.1| PREDICTED: single-stranded-DNA-specific exonuclease recJ-like,
           partial [Xenopus (Silurana) tropicalis]
          Length = 593

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 265/581 (45%), Gaps = 31/581 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             ++       A A+ ++  I  ++AR+   R V    A   L+ ++  L+P P+ L   
Sbjct: 30  KIIVRDTPPRSAWAL-EQAGIHPLLARLYAARGVC---APGELDDALARLLP-PVTLRGT 84

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137
            +AAR +  AI + ++I+I  DYD DGA + A+ +R L     +  +  +PDR+VDGYG 
Sbjct: 85  QEAARLLADAIASGQRIVIVADYDCDGATACAVAVRGLRLLGAHHVDYLVPDRVVDGYGL 144

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P +  +    GA L++TVD G  S + ++ A   G+ V+V DHH    E   A A+VNP
Sbjct: 145 TPPIARRVHARGADLLVTVDNGIASVEGVREAKALGLAVLVTDHHLPGPELPVADAIVNP 204

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255
           N+         +   GVVF VL+ +   LR            L  LL LVAL TV DVVP
Sbjct: 205 NQPGCTFESKAMAGVGVVFYVLLALRAELRARAIFDATSQPRLEPLLPLVALGTVADVVP 264

Query: 256 LIGLNRAYVVKGLMVARRQGNPG--LKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R    P             +   T  + G+ +GP INA GR+ +
Sbjct: 265 LDANNRRLVAQGLKRVRAGAMPAGLAALFTAARRKAEQATTFDFGFALGPRINAAGRLAD 324

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIV 372
             LG   L++DD      LA +LD +N  RR +E  M EQA        D        + 
Sbjct: 325 MTLGIECLLTDDPARALELARQLDAINHERREIEGGMREQAMLLAENLFDASAPPPPAVS 384

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           V    +H G+VG++A+R+K++  RP+F      +  +  +  GSGRSI GF +   +   
Sbjct: 385 VFDPDFHEGVVGIVASRIKDQLHRPTFVFAASSAPGKAHELKGSGRSIAGFHLRDALDLV 444

Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                G+++K GGHAMAAG TV   +F      F + A   +     T   + DG +   
Sbjct: 445 AKRHPGVVLKFGGHAMAAGCTVAGAHFATFERAFAQVAQERLDTATLTRRLETDGPVAPE 504

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAI 544
            +   L+D+L     +G G   P F     ++ + R+V     HL +    +  + +  I
Sbjct: 505 YLRADLVDLLAR-EVWGQGFAPPTF-SEELQVLNQRLVGEGKNHLSLKLLHR-GQPVDGI 561

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
            F                ++  +   L V+ WRG +R Q  
Sbjct: 562 WFGHTE---------PLPRQALLAFRLDVHEWRGERRVQFV 593


>gi|116619525|ref|YP_821681.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222687|gb|ABJ81396.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 582

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 190/584 (32%), Positives = 280/584 (47%), Gaps = 24/584 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RWV       +  ALA   K  +P   ARVL  R     D A+ FL P+   L  DPL +
Sbjct: 13  RWVLPAPDAAVVAALAAALKIGMP--AARVLAARGFGDADAARRFLEPAFEELH-DPLSM 69

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A  RI +AI + E+I+I+GDYDVDG  SV L+ + +      A  ++P R+ DGY
Sbjct: 70  RDMPAAIERIARAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYHVPHRLKDGY 129

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G  P ++E    +G +LI++VD G  + + ++ A   GIDVIV DHH  ++E  PA A++
Sbjct: 130 GMRPEVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPETELPPALAVL 189

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NPNRLD    + +LC AGV F V+  +   +       +     S L L A+ATV DVVP
Sbjct: 190 NPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGW-PADKVRRVSESFLKLAAIATVADVVP 248

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIG 312
           L G NR  V  GL       N GL+AL++    +    P  A  + + I P +NA GR+ 
Sbjct: 249 LTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGRMD 308

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            +     L ++ D++    LA +L   N  R+ +E+ + E  E   +         S +V
Sbjct: 309 TARAVVELFLTSDAERARELAKQLHEQNAERQAVEAEIRETCEQIAV-----DGAESALV 363

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
              + WH G++G++A+RL E+  RP F +S   EDG   GSGRSI  F + + +      
Sbjct: 364 YYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALES--MP 421

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            + +K GGH  AAG+T+E        + F  FA   + A       +ID VL    +N  
Sbjct: 422 ELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINEQ 481

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
               L    P+G GNP P+FA  N ++ S  V    HL++    Q+   L   A+     
Sbjct: 482 TTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVR-QNGRGLSLKAWNFA-- 538

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYW---RGSKRCQLRVLDASPV 592
                     G R+ +  +L  + +   RG       + D  P 
Sbjct: 539 --ARVGELPPGARVDLAFNLEEDAYSAARGYPAWAAILRDVKPA 580


>gi|317405241|gb|EFV85578.1| single-stranded-DNA-specific exonuclease [Achromobacter
           xylosoxidans C54]
          Length = 566

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 180/565 (31%), Positives = 269/565 (47%), Gaps = 27/565 (4%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           +   I  ++AR+   R V          PS   L+P P  LT    AA  +  AI   +K
Sbjct: 20  EASGIHPLLARLWAARGVVHPDQTRLAWPS---LLP-PAGLTHSTHAAGVLADAIQAGKK 75

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KFINEGAQ 151
           ++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +P+++E   +       
Sbjct: 76  LLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRAGKPD 135

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           +IITVD G  S D +  A   GI V++ DHH        A A+VNPN+        +L  
Sbjct: 136 IIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPDALAIVNPNQPGCGFPSKNLAG 195

Query: 212 AGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
            GV+F +++ +   LR+      +    L +L DLVAL TV DVV L   NR  V +GL 
Sbjct: 196 VGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQ 255

Query: 270 VARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R     PGL+AL              +LG+ +GP INA GR+ + +LG   L +DD  
Sbjct: 256 RMRSGRLQPGLRALFAVAGREPRSANGFDLGFALGPRINAAGRLADMSLGIACLTTDDEA 315

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           +   +A +LD +N+ RR +E+ M EQA      +  D    + + V    WH G+VGL+A
Sbjct: 316 QALEMARELDNINRERRSIEAEMREQAL--AAMEAPDAAPGATVCVFDPGWHQGVVGLVA 373

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445
           +RLKEKF RP+ A +   D +  GSGRSI    +  ++         ++ K GGHAMAAG
Sbjct: 374 SRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDVLDLVSKRHPNLIRKFGGHAMAAG 433

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+ R +F      F      +       PV + DG L +   N  +  +L+    +GAG
Sbjct: 434 LTLGRNDFPAFAPAFDAAVRELTGRDSFEPVIETDGSLESGYANAEVAGLLQQ-QVWGAG 492

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
              P+F      +++ R+V   HL+++ E +  +   AI F            QS  +R+
Sbjct: 493 FAAPLFLDEFV-VRNQRLVGEKHLKLSLE-RGQQRFDAIWFGHD---------QSLPERI 541

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590
                L  N W G    QL +  A+
Sbjct: 542 QAAYRLEQNVWNGMVSVQLVIEHAA 566


>gi|311107119|ref|YP_003979972.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter
           xylosoxidans A8]
 gi|310761808|gb|ADP17257.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter
           xylosoxidans A8]
          Length = 566

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 180/570 (31%), Positives = 273/570 (47%), Gaps = 27/570 (4%)

Query: 29  RALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           +A  I +   I  ++AR+   R V+          + + L+P P  LT  D AA  +  A
Sbjct: 14  QACHILEASGIHPLLARLWAARGVTHPDQTQL---AWKSLLP-PNGLTHSDHAAGVLADA 69

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KF 145
           I   +K++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +P++++   + 
Sbjct: 70  IQAGKKLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVDLAVRH 129

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 +IITVD G  S D +  A + GI V++ DHH        A A+VNPN+      
Sbjct: 130 RAGKPDIIITVDNGIASVDGVAAANDAGIGVVITDHHLPGDTLPAALAIVNPNQPGCGFP 189

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAY 263
             +L   GV+F +++ +   LR+      +    L +L DLVAL TV DVV L   NR  
Sbjct: 190 SKNLAGVGVIFYMMLALRAELRRRGVYAADGGPRLDALSDLVALGTVADVVKLDANNRLL 249

Query: 264 VVKGLMVARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R     PGL+AL              +LG+ +GP INA GR+ + +LG   L
Sbjct: 250 VTQGLQRMRAGRLQPGLRALFAVAGREPRAANGFDLGFALGPRINAAGRLADMSLGIACL 309

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
            +DD  +   +A +LD +N+ RR +E+ M EQA A    +  +    + + V    WH G
Sbjct: 310 TTDDEAQALEMARELDNINRERRTIEAEMREQALA--AMEAPNAAAGATVCVFDPGWHQG 367

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439
           +VGL+A+RLKEKF RP+ A +   D +  GSGRSI    +   +         ++ K GG
Sbjct: 368 VVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDALDLVSKRHPNLIRKFGG 427

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGLT+ R +F      F      +       PV + DG L +   N  +  ML+  
Sbjct: 428 HAMAAGLTLGREDFAAFAPAFDAAVRELTGRDTFEPVIETDGSLESGYANADVAGMLQQ- 486

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
             +GAG   P+F      +++ R+V   HL+++ E +  +   AI F            Q
Sbjct: 487 QVWGAGFAAPLFLDEFV-VRNQRLVGEKHLKLSLE-RGHQRFDAIWFGHD---------Q 535

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           S  + +     L  N W G    QL +  A
Sbjct: 536 SLPEHIQAAYRLEQNVWNGMVSVQLVIEHA 565


>gi|319943693|ref|ZP_08017974.1| single-stranded-DNA-specific exonuclease RecJ [Lautropia mirabilis
           ATCC 51599]
 gi|319742926|gb|EFV95332.1| single-stranded-DNA-specific exonuclease RecJ [Lautropia mirabilis
           ATCC 51599]
          Length = 586

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 282/581 (48%), Gaps = 32/581 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
                   +     + Q   +  ++AR+L  R +   D  +      +  L+P P  +  
Sbjct: 11  RLHTRPVDLRARQTLLQA-GVDPLLARLLAARGIRHPDEIRL----DLAGLLP-PDTMRG 64

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +A  R+ +AI + E I++ GDYD DGA ++A+ ++ L       +  +P+R  +GYG 
Sbjct: 65  LPEAVARLSRAIDDQEPILVVGDYDCDGATAIAIAVQGLRMMGATIDYLVPNRFENGYGL 124

Query: 138 NPSLMEKFINEG----AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
            P +++  +         L++TVD G  S   +++A + G+ VIV DHH        A A
Sbjct: 125 TPEVVDAALVHPRLGRPALLLTVDNGIASVAGVEHANSLGLPVIVTDHHLPAETLPAALA 184

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCD 252
           +VNPN+        +L   GV+  VL+ +    RQ  +       L  L+DL AL TV D
Sbjct: 185 IVNPNQPGCPFPDKNLAGVGVMLYVLIALRSHRRQLGRFDGPPPSLSPLMDLAALGTVAD 244

Query: 253 VVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310
           VVPL   NR  V  GL   R  +  PG+ AL++    S+  + A +LG+ IGP INA GR
Sbjct: 245 VVPLSHNNRVIVNAGLARIRAGRARPGIAALLQVARRSAHTLAATDLGFAIGPRINAAGR 304

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + + ++G   L++ D      LA +LD +NQ RR +ES M E+A A +     D   A  
Sbjct: 305 LADMSIGVECLLATDLARATQLATELDQINQQRRDLESNMREEALALIGEPAAD---ART 361

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA-- 428
           +V+  D WH G++GL+A+R+KE++ RP+ A++ ++DG   GSGRSI G  +  ++     
Sbjct: 362 LVIHDDNWHHGVIGLVASRIKERYHRPTIALAPDQDGMLRGSGRSIAGVHLRDVLDLVDK 421

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
              G+LVK GGHAMAAGLT+            +     +            DG L A A+
Sbjct: 422 RHPGMLVKFGGHAMAAGLTLPADRLDDFRQALEDAVRTLARDDCFERDVTTDGALPADAI 481

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD--SETLQAIAF 546
           +I  +++L++   +G G P P+F+     +++ R++N  HL++     D     + AI F
Sbjct: 482 HIGTLELLDT-QVWGQGFPPPLFSGR-FNIRTQRLINNRHLKLELSPADDPGVRMSAIFF 539

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                   E L+            +  + +RG     L++ 
Sbjct: 540 GRTEALPPEALLS---------YRIQRDDYRGRDAVSLQID 571


>gi|126439504|ref|YP_001059614.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 668]
 gi|126218997|gb|ABN82503.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei 668]
          Length = 564

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 179/574 (31%), Positives = 274/574 (47%), Gaps = 30/574 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
                A+  +H +  ++AR+   R + S    +     ++  L+P P  L  C +AA  +
Sbjct: 11  PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E  
Sbjct: 65  ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNPN+      
Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
             H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV L G NR 
Sbjct: 185 SKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRV 244

Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRL 320
            V +GL   R        A + R       +A   +LG+ +GP +NA GR+ + +LG   
Sbjct: 245 LVAQGLQRIRNGRMQPGIAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIEC 304

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L +DD      LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I +    WH 
Sbjct: 305 LTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQ 362

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVK 436
           G++G++A RLKE+F RP+F  +  +DG     GSGRSI GF +   +      E  ++V 
Sbjct: 363 GVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVT 422

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +     ++++L
Sbjct: 423 FGGHAMAAGVTLDTANVPRFAAAFETVAREWLSDDALARVIETDGDLEDAYFTPQVVELL 482

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           + A  +G G P P+F+     + S  +V   HL++   ++  +   AI F          
Sbjct: 483 D-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL-TRGRQRFNAIWFNHAE------ 533

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  R  +   L  + W G+ R QL V  A+
Sbjct: 534 ---PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564


>gi|288869877|ref|ZP_06112139.2| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           hathewayi DSM 13479]
 gi|288869295|gb|EFD01594.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           hathewayi DSM 13479]
          Length = 564

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 169/573 (29%), Positives = 278/573 (48%), Gaps = 26/573 (4%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82
           Q        +   H I  + AR++ NR++   +  + +L  S++ L   P +L D D A 
Sbjct: 3   QTKKADFHEMAGIHHITPVTARIIRNRDIVGAEAVEKYLRGSLKDLY-SPHLLKDMDLAV 61

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
             +       ++I I GDYD+DG  S  L+ R L+    N +  IPDRI DGYG N S++
Sbjct: 62  EILKGKTEQGKRIRIVGDYDIDGVCSTYLLYRALTRIGANVDYEIPDRIKDGYGINESII 121

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-----QVKSEEIPAYALVNP 197
               ++G   I+T D G  + + ++ A   G+ V++ DHH     + +    PA A+VNP
Sbjct: 122 RAAADDGVDTILTCDNGIAAVEQVRLAKELGLTVLITDHHDIMQEEGRDVLPPADAVVNP 181

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            +         +C   V + ++  +Y        VP    L S+L+  A+ATV DV+ L 
Sbjct: 182 KQSGCSYPYPEICGGMVAYKLVKALYEAF----SVPEEEWL-SMLEFAAIATVGDVMKLR 236

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316
             NR  V +GL       + GL  LIER +     I+A ++G++IGP +NAGGR+  + L
Sbjct: 237 DENRIIVKEGLKRIADTKSIGLLKLIERNDLDKDHISAYHIGFVIGPCLNAGGRLQTAKL 296

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL+ +D +E + LAM+L  LN  R+ M     E+A A+V     D +   V+V    
Sbjct: 297 ALALLLCEDGEEADRLAMELKELNDQRKDMTKQGTEEAIAQVEQCYRDDK---VLVAYLP 353

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             H  + G++A RL+E++ +P+F ++ + +G   GSGRSIE + +           +L+K
Sbjct: 354 SCHESLAGIIAGRLREQYQKPAFVLT-DGEGCVKGSGRSIEQYHM--FEGLVKVRDLLLK 410

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH MAAGL++E+ N         + A   +          ID  +    ++  LI+ L
Sbjct: 411 FGGHPMAAGLSLEKENIDEFRRRLNEDAE--LTEDDFVRRIWIDVPMPFDYISEPLIEEL 468

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLG 554
           E   P+G GN  P+FA     ++S+RV+      ++ +   +    + A+ F    T L 
Sbjct: 469 ELLEPFGQGNEKPLFAQKGLHIRSVRVLGKNRNAVKFSLADEKGTPMDAMLFTDGDTFLE 528

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           E       + + V  +  VN + GS+  Q+ + 
Sbjct: 529 EL---GNRRVIDVIYYPTVNEYNGSRTLQVIIK 558


>gi|282919410|ref|ZP_06327145.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus C427]
 gi|282317220|gb|EFB47594.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           subsp. aureus C427]
          Length = 757

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 157/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   +I +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIEKIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A    +  +      +++  
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568


>gi|144897176|emb|CAM74040.1| single-stranded-DNA-specific exonuclease RecJ [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 495

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 209/473 (44%), Positives = 297/473 (62%), Gaps = 8/473 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62
           D AFLGVE S++G RW S  G E    A  ++Q+ A+P+I+ RVL  R + +D A+ FL+
Sbjct: 4   DAAFLGVERSLTGRRWQSSGGDE--RLAATLSQRLALPEIIGRVLAARGIGLDEAETFLS 61

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           P++R L+PDP  L D DKAA RI  A+   E I IFGDYDVDGA S AL+  FL+     
Sbjct: 62  PTLRALLPDPSHLKDMDKAAARIASAVMAGEPIGIFGDYDVDGATSSALLNTFLTAIGAT 121

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           A ++IPDR+ +GYGPN   + K   +GA++++TVDCG+T++D L+ A   GIDVIV+DHH
Sbjct: 122 ALVHIPDRMSEGYGPNLPALLKLAAQGAKVVVTVDCGTTAFDPLEGAAEAGIDVIVVDHH 181

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239
           + +     A+A++NP RLDD S  GHL A GV FLV+V + R+L++           DLL
Sbjct: 182 EAEPHLPRAFAIINPKRLDDDSPHGHLAAVGVTFLVVVAVNRVLKEAGWYGPARPAPDLL 241

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
             LD+VAL TVCDVVPL G+NRA V +GL V  ++ N GL AL +   I     + +LGY
Sbjct: 242 QWLDVVALGTVCDVVPLWGVNRALVTQGLKVMAKRANVGLAALSDVAGIKERPDSYHLGY 301

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
           ++GP +NAGGR+G+S LGSRLL + D      +A +LD  N+ R+ +E+A+L +A  +V 
Sbjct: 302 VLGPRVNAGGRVGQSALGSRLLSTHDPLLAADIARQLDGYNKERQEIEAAVLLEAIEQV- 360

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
            +  D     ++V  G+ WHPG++G++A RLKE++GRP+  I+  +  +G GSGRS+ G 
Sbjct: 361 -EGRDDDGLPLVVAAGENWHPGVIGIVAGRLKERYGRPACVIA-LDGDEGKGSGRSVTGL 418

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
           D+G  +  A ++G+L   GGHAMAA     R   G    F        +   +
Sbjct: 419 DLGCAIIAARQQGLLKADGGHAMAARSLEMRDRLGAFRAFLADRLQAQLTDEL 471


>gi|254469311|ref|ZP_05082716.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp.
           JE062]
 gi|211961146|gb|EEA96341.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp.
           JE062]
          Length = 470

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 235/455 (51%), Positives = 307/455 (67%), Gaps = 2/455 (0%)

Query: 4   QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63
           +  LGV+ S+S   W   L  +G+++ALAI Q+  +P++V RVL  R+V ++ A  FLNP
Sbjct: 13  RVVLGVKKSLSARVWRERLDDQGLSQALAIAQRTELPEVVGRVLAGRSVPLEDASGFLNP 72

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123
           SI+ LMPDP  L D DKA  R+  A+    KI +FGDYDVDGA S AL+ R+L    V  
Sbjct: 73  SIKDLMPDPSKLVDMDKACARVADALQAGVKIAVFGDYDVDGATSSALLKRYLMQLGVEP 132

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           ++YIPDRI+DGYGPNP+ + +    GA+L+ITVDCGSTS++A + A   G++V+V+DHHQ
Sbjct: 133 DVYIPDRIIDGYGPNPTAINQLHAGGARLLITVDCGSTSFEAFEEAKRLGLEVVVLDHHQ 192

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSL 241
           V       +ALVN NR DDLSGQG+L A GV FL LV + R LR+           L+ L
Sbjct: 193 VDENFPEVHALVNANRQDDLSGQGYLAAVGVTFLFLVGLNRELRRRGAFAQRAEPRLMDL 252

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301
           LDLVAL TVCDVVPL GLNRAYVV+GL V  R+ N GL  L +   +S   T  +LGYM+
Sbjct: 253 LDLVALGTVCDVVPLKGLNRAYVVQGLKVMARRENIGLSCLADISRLSGKPTPYHLGYML 312

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INAGGRIG+S LG +LL SDD  E E +A  L+ LNQ R+ ME+ MLE+ E +   +
Sbjct: 313 GPRINAGGRIGDSALGMKLLSSDDRAEGERIAATLERLNQERQAMEAVMLEEGEGQAFQK 372

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
            +     +V++   D WHPG+VGL+A+RLKE++ RP+FA++F E G G GSGRSI G D+
Sbjct: 373 MEGAVPPAVLLTGADGWHPGVVGLIASRLKERYRRPAFAMAFNEQGVGTGSGRSIMGVDL 432

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456
           G  V  AVE G+LVKGGGHAMAAGLT+++      
Sbjct: 433 GSAVRAAVEAGLLVKGGGHAMAAGLTIQKDKVREF 467


>gi|269217260|ref|ZP_06161114.1| single-strand DNA-specific exonuclease [Slackia exigua ATCC 700122]
 gi|269129397|gb|EEZ60482.1| single-strand DNA-specific exonuclease [Slackia exigua ATCC 700122]
          Length = 1107

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/578 (26%), Positives = 256/578 (44%), Gaps = 24/578 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
              +          +  +  +P  VA  +V+  V +I+ A+ FL+P +     +P  +  
Sbjct: 8   QFEIKDACPIAVSVLMSEFRLPRFVAATMVSHGVKTIEDARLFLSPDLERDWLNPYTIPG 67

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +AA R+  A+   E+I++FGD+D+DG ++  ++ R L     +A   IP R  +GYG 
Sbjct: 68  MQEAADRVEAALRAHERILVFGDFDLDGISATTVLTRGLRALDGDACWLIPRRFEEGYGM 127

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           + + + + +     L+++VDCG ++    +     G+DV++ DHH+              
Sbjct: 128 SEASIARALESKPDLVVSVDCGISNGKEARRFNELGVDVVITDHHEPGESMPECIVCDPK 187

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                 S    L   GV   ++  +     + N         S  D  AL TV D++PL+
Sbjct: 188 TDPGCKSSI--LAGVGVALKLVQALGARFGKPNLW------RSFTDFAALGTVADLMPLV 239

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316
           G NRA V  GL        P + AL+   N+S  P+TA NL + + P +NA GR+G ++L
Sbjct: 240 GENRALVSDGLARMNEHPRPSIAALVGVCNVSGKPLTATNLSFSLIPRLNAAGRMGNADL 299

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
            + LL+ D        A +LD +N  RR +E+ + + A A+             +VV G+
Sbjct: 300 AAELLMEDGFDAAAEKAARLDAVNDQRRAIEADLAKVALAQAEDIYHGQ---HALVVSGE 356

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G+ G++A+RL  K+G P+   S  E  +  GSGRS+   ++    + A    IL +
Sbjct: 357 GWHEGVKGIVASRLVSKYGVPTILFS-IEGDEARGSGRSVGQVNL--FKAVAQTSDILTR 413

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A G+T+         +    +    +P     P+  ID  +    + I  ++ L
Sbjct: 414 FGGHEAAVGVTLPADKLPEFTERLCAYMDA-LPESSFHPLLSIDADVRLGELTIDAVEAL 472

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           E   P+G  NP P     N ++ + R V     HL  T        +  I F     P G
Sbjct: 473 ERLAPFGQENPTPRLIARNVRISNCRAVGAAKNHLSCTLTDGIHH-VDGIMF----HPAG 527

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              + S G  +       V+ WRG ++ +  +    P+
Sbjct: 528 IEDLISCGCVVDAVFEAQVDEWRGRRKVKAMLQSIEPL 565


>gi|110834512|ref|YP_693371.1| single-stranded-DNA-specific exonuclease RecJ [Alcanivorax
           borkumensis SK2]
 gi|110647623|emb|CAL17099.1| Single-stranded-DNA-specific exonuclease RecJ [Alcanivorax
           borkumensis SK2]
          Length = 574

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 176/564 (31%), Positives = 266/564 (47%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++AR+L  R V+       L+  ++ L P P   T    A   ++Q      +I I
Sbjct: 23  DVPPMLARILAGRGVTDPAL---LDLGLKRL-PHPERFTGLRGAVALLLQGRTEQWRICI 78

Query: 98  FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155
            GDYD DGA +  LM+R L        +  +PDR   GYG +P++++         LIIT
Sbjct: 79  VGDYDADGATATTLMVRGLERLGYARPDFLVPDRFEYGYGLSPAIVDLAKELYDPDLIIT 138

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD-LSGQGHLCAAGV 214
           VD G  S D +  A  QG+ V++ DHH        A ALVNP           +L   GV
Sbjct: 139 VDNGIASVDGVAAARAQGMRVLITDHHLPGETLPEADALVNPRLPGCEDFPATNLAGVGV 198

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            F +L+ + R LR+         +  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 199 AFYLLMDLQRALREQGVAASAP-ITDLLDLVALGTVADVVVLDDANRVLVEQGLRRIRAG 257

Query: 275 G-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL++        + A ++G+ +GP +NA GR+ +   G   L++    E   +
Sbjct: 258 KGCPGIRALLQVAGRDPNRVLAADMGFAVGPRLNAAGRLTDMTQGIACLLAQTDAEATEM 317

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A  LD +N+ RR +E  M + A  +V     D    + + + G  WH G+VG+LA+R+KE
Sbjct: 318 AQDLDTINRERRSIEHGMRDAAMEEVARLDAD-NLPAGLCLYGKEWHEGVVGILASRVKE 376

Query: 393 KFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
              RP  A +  ++ G+  GSGRSI G  +   +        G+L K GGHAMAAGL++E
Sbjct: 377 AIHRPVIAFAPAQQRGQLKGSGRSIPGLHLRDALDAVATANPGLLSKFGGHAMAAGLSLE 436

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F+K    ++       + + DG L+   +++   ++L    P+G G P P
Sbjct: 437 LDKLEDFKAAFEKAVGELLSPKALERIVETDGELDDHELSLTNAELLSHRFPWGQGFPAP 496

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     ++   R+V   HL++T      S  + AI F V    L   + + RG      
Sbjct: 497 SFDGE-FEVLKHRIVGERHLKLTLGLPGISGVIDAIHFNVAVEALPSRISKVRG-----V 550

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN +RG +  QL      P+
Sbjct: 551 YRLEVNEFRGQRNPQLLFEHLIPL 574


>gi|107028704|ref|YP_625799.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           cenocepacia AU 1054]
 gi|105897868|gb|ABF80826.1| exonuclease RecJ [Burkholderia cenocepacia AU 1054]
          Length = 565

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 184/581 (31%), Positives = 271/581 (46%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        HL   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R        A + R       TA   +LG+ +GP +NA GR+ +
Sbjct: 238 LDSNNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      
Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT++  N  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         V   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564


>gi|325142112|gb|EGC64538.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis 961-5945]
 gi|325198045|gb|ADY93501.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis G2136]
          Length = 566

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    +V   D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAK-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|313906022|ref|ZP_07839375.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium
           cellulosolvens 6]
 gi|313469135|gb|EFR64484.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium
           cellulosolvens 6]
          Length = 611

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/618 (27%), Positives = 281/618 (45%), Gaps = 62/618 (10%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV---------------SIDYAKDFL 61
           +W+    +   N    + +K  I  ++ R++ NR+V               + +  + ++
Sbjct: 4   KWMVAAKRADFN---GLGKKLGIDPVIVRLIRNRDVFSEEDTAVLPDGRTLAEEKIEKYI 60

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
             S++ L  DP ++ D DK    I+ AI    KI I GDYD+DG  S  +++  L     
Sbjct: 61  RGSLKDLY-DPHLMKDMDKGCAVILSAIREGLKIRIIGDYDIDGIMSSYILLTGLKEIGA 119

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           + ++ IP+RI DGYG N +L+ +   +G  L++T D G  +   +  A + G+  +V DH
Sbjct: 120 DVDVRIPERIRDGYGLNENLVRQAAEDGVNLMVTCDNGIAAAAQIALANSLGMRAVVTDH 179

Query: 182 HQVKSEEI------------------------PAYALVNPNRLDDLSGQGHLCAAGVVFL 217
           H V   +                         PA A++NP+R DD      LC AGV F 
Sbjct: 180 HAVPFADHEEGEPGTEGMEKTEEGKRREYLLPPAEAVINPHRADDAYPFEGLCGAGVAFK 239

Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277
           ++  ++  +  D    +       L  VA+AT+ DV+ L   NR  V +GL    R  NP
Sbjct: 240 LVSALFDEVLTDAAYAVKKK-EDYLQFVAIATIGDVMELKDENRILVREGLKRLHRTENP 298

Query: 278 GLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           GL  LI +  I    +   ++G++IGP +NA GR+  +     +L +   +E  +LA  L
Sbjct: 299 GLLELIRQNGIEKEAVDVYHIGFVIGPCLNASGRLDTAERALEMLCAKTVEEAAVLAGDL 358

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
             LN +R+ M     E+A + V  +   ++   V+VV     H  + G++A RLKE + R
Sbjct: 359 VSLNASRKEMTIQGAEKAISMV--EEGPMRCDRVLVVYLPDCHESLAGIIAGRLKEHYNR 416

Query: 397 PSFAISF------EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
           PSF  +         +    GSGRSIE + +         + ++ K GGH MAAG+++ +
Sbjct: 417 PSFVFTDADGADENGEPMVKGSGRSIETYSMY--EELCKCKDLMTKFGGHPMAAGVSLPK 474

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
               +L           +     TP   ID  +  S +   LI  LE   P+G GNP P+
Sbjct: 475 EKLDQLRRELNGNC--TLTEEQMTPKVTIDVPMPLSYIREDLIRQLEVLKPFGNGNPKPL 532

Query: 511 FAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           FA     +++ RV        +M   ++D  ++ A+ F   G    +++     +R+ V 
Sbjct: 533 FAQSGMMVRNPRVFGKNRNVCKMKLVAEDGCSMDAVMFG-DGDEFIDYVQSH--RRISVI 589

Query: 569 GHLCVNYWRGSKRCQLRV 586
            +  ++ W+G    Q+ V
Sbjct: 590 YYPGIDTWQGRNSLQVTV 607


>gi|115374731|ref|ZP_01462008.1| single-stranded-DNA-specific exonuclease RecJ [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368302|gb|EAU67260.1| single-stranded-DNA-specific exonuclease RecJ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 510

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 170/523 (32%), Positives = 269/523 (51%), Gaps = 22/523 (4%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
              A  R+ +A+   EKI ++GDYDVDG  S +L+  FL         YIP R+ +GYG 
Sbjct: 1   MTSAVERLARALRLGEKITLYGDYDVDGVCSTSLLTLFLRQLGAQPATYIPHRLGEGYGL 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N   M++   EG +L++T+DCG TS   +  A   G+DV+++DHH V +    A A++NP
Sbjct: 61  NLQAMDRIAQEGTRLLVTLDCGITSVAEVARARELGMDVVIVDHHTVPTTLPAAVAVLNP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
           ++         LCAAGV F + + + + LR +          L  L+DLVALATV DVVP
Sbjct: 121 HQPGCDYPTKTLCAAGVAFNLCMGLRKHLRDEGFFATRKEPLLKGLMDLVALATVADVVP 180

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGE 313
           L G NR  V  GL        PG++AL E   +    P+TA  +G+ +GP INA GR+ +
Sbjct: 181 LTGANRILVAHGLQELTAARRPGVRALKEVAGVEPEAPVTAGQVGFRLGPRINAAGRLHD 240

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++LG +LL ++  ++   LA  LD  N  R+ +ES++L +A      Q + +  A  +V+
Sbjct: 241 ASLGLQLLTAESLEDARRLAGVLDRANAERQGIESSILTEAL----KQAESLPHARGLVL 296

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WHPG++G++A+R+ E+F RP+  +   E G G GS RSIEGF +   +       +
Sbjct: 297 YAEGWHPGVIGIVASRVVERFHRPTVMVGVNE-GIGKGSARSIEGFHLYDALHGC--ADM 353

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGLT+E        + F++ A   +      P  K+D V+    ++   +
Sbjct: 354 LSRFGGHKYAAGLTIEAGRLPAFREAFERIALERLTPEDLIPRCKVDAVVTPHELDERAV 413

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV----NLAHLQMTFESQDSETLQAIAFRVY 549
           + L+  GP+G GNP PV      ++   RV+       H  +     D+  + AI F + 
Sbjct: 414 ESLQRLGPFGQGNPEPVLVLRK-QMARPRVLPPKTGHGHAHLKLALVDAPGVDAIGFGMA 472

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                   +      + +   + ++ +RG +R  LR+ D    
Sbjct: 473 DR------LSLVEGPVDLAFQVGMDTFRGQRRVSLRLKDLRIA 509


>gi|296158325|ref|ZP_06841156.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           Ch1-1]
 gi|295891269|gb|EFG71056.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           Ch1-1]
          Length = 568

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 184/572 (32%), Positives = 269/572 (47%), Gaps = 32/572 (5%)

Query: 32  AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
            I  +H +  ++AR+   R V   D  +      +  L+P P+ L  C+ AA  +  AI 
Sbjct: 15  EILTRHGLHPVLARLYAARGVCMPDEIET----GLARLVP-PVALKGCEDAAALLADAIQ 69

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFIN 147
           +  ++++  DYD DGA + A+ +R L          +P+R   GYG  P ++    +   
Sbjct: 70  SKRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEIVALAARNAA 129

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
               L+ITVD G  S D +Q A   GIDV+V DHH    E  PA A+VNPN+        
Sbjct: 130 GKPDLLITVDNGIASVDGVQAANALGIDVLVTDHHLPGDELPPARAIVNPNQPGCTFPSK 189

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
            +   GV+F VL+ +   LR+            L  LLDLVAL TV DVV L G NR  V
Sbjct: 190 CIAGVGVMFYVLLALRAELRRRGAFNDNFPEPRLDGLLDLVALGTVADVVKLDGNNRVLV 249

Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +GL   R+       A + R       +A   +LG+ +GP +NA GR+ + +LG   L 
Sbjct: 250 AQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSDMSLGIECLT 309

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
           +DD      LA +LD +N+ RR +E+ M +QA   +     D    + I +    WH G+
Sbjct: 310 TDDIGRAWDLAQQLDTMNRERREIEAGMQQQALDDLSA--IDPDGTTTITLFNPDWHQGV 367

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           +G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      E G++VK G
Sbjct: 368 IGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSIAGFHLRDALDLISKREPGLIVKFG 427

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLT+   +  R    F+      +     +   + DG L  +      ++ML+ 
Sbjct: 428 GHAMAAGLTLAAADVPRFTAAFEAVGREWLSEEALSRTVETDGELEDAYFTPQFVEMLD- 486

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           A  +G G P PVF+     + S  +V   HL++    +  +   AI F    T       
Sbjct: 487 AAVWGQGFPAPVFSGE-FDIVSQALVKDKHLKLQLV-RGRQRFNAIWFNHTDT------- 537

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                R  V   L  + W G  R QL V  A+
Sbjct: 538 --LPARTTVAYRLASDTWNGVSRVQLIVEHAA 567


>gi|329903723|ref|ZP_08273599.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548244|gb|EGF32943.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 564

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 176/579 (30%), Positives = 268/579 (46%), Gaps = 26/579 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
                         + Q   I  ++AR+ V R +        L+  +  ++  P  L   
Sbjct: 3   RLATRAASPRDTERLIQD-GIHPVLARLYVARGLLDA---RELSSELSSMIA-PSGLLHI 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           D AA  +  AI   ++++I  DYD DGA + A+ +R L     + +  +P+R   GYG  
Sbjct: 58  DAAAIFLADAIAAKKRMVIVADYDCDGATACAVGLRGLRMLGADVDFIVPNRFEYGYGLT 117

Query: 139 PSLME-KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           P ++      +   +I+TVD G  S D +  A  +GIDV+V DHH        A  +VNP
Sbjct: 118 PEIVALAQAEKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNP 177

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255
           N+ +      +L   GV+F VL+ +   LR+      +    L  LLDLVAL TV DVV 
Sbjct: 178 NQPECGFPSKNLAGVGVMFYVLLALRAELRKRGIFDQHSQPKLDVLLDLVALGTVADVVK 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERV-NISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R  + + G+ AL       +   +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDANNRILVAQGLKRMRAGRMHAGVAALFRASAREARKASPFDLGFALGPRLNAAGRLAD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   L +DD      +A +LD +N+ RR +E+ M + A   +     + Q  S I V
Sbjct: 298 MSLGIECLTTDDEGRAWAIAQQLDAINRERRDIEADMQDTALELL--DSFNPQDNSTISV 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++A+RLK+KF RP+   +   DG   GSGRSI GF +   +    +   
Sbjct: 356 FDAGWHQGVIGIVASRLKDKFYRPTITFAPASDGWIKGSGRSIPGFHLRDALDLVSKHAP 415

Query: 434 --LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             + K GGHAMAAGLT+   NF      F+    + +       V + DG L  +     
Sbjct: 416 TLIDKFGGHAMAAGLTLRAENFDAFAAAFEAVGRSWLTQNQLERVLENDGSLEDAFFTTQ 475

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
            ID+L+ A  +G G   PVF     ++ S R++   HL++  E ++ +   AI F     
Sbjct: 476 FIDLLD-AQVWGQGFAPPVFCDE-FRVISQRILKERHLKLQLE-RNGQRFDAIWFGHTDD 532

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     G R  V   L  N + G  R QL V  A 
Sbjct: 533 ---------LGGRARVAYRLDANEYNGVTRVQLMVEYAE 562


>gi|289663381|ref|ZP_06484962.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 579

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 173/565 (30%), Positives = 274/565 (48%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ RV   R V+         P +  L+  P +L +   AA  +  AI    +I++ GD
Sbjct: 24  PLLRRVYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A ++G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKSRGWTVLVTDHHLPGEMLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + +  +LR+          DL  LLDLVA+ TV D+VPL   NRA V  GL   R     
Sbjct: 200 LALRSVLRKRGAFAGRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D ++   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWRQARAIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPMAACLFDAEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ + GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQRFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +             + + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCPGRAEPLNAIHFNGWRG-------SEPARSVRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    PV 
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPVT 576


>gi|57650517|ref|YP_186530.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus COL]
 gi|87159970|ref|YP_494287.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195447|ref|YP_500251.1| hypothetical protein SAOUHSC_01744 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221750|ref|YP_001332572.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|161509861|ref|YP_001575520.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258450538|ref|ZP_05698600.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A5948]
 gi|262048626|ref|ZP_06021509.1| hypothetical protein SAD30_1022 [Staphylococcus aureus D30]
 gi|262051286|ref|ZP_06023510.1| hypothetical protein SA930_1717 [Staphylococcus aureus 930918-3]
 gi|282920185|ref|ZP_06327910.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A9765]
 gi|294848665|ref|ZP_06789411.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A9754]
 gi|304380767|ref|ZP_07363435.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|57284703|gb|AAW36797.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus COL]
 gi|87125944|gb|ABD20458.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87203005|gb|ABD30815.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374550|dbj|BAF67810.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|160368670|gb|ABX29641.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257861696|gb|EEV84495.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A5948]
 gi|259160923|gb|EEW45943.1| hypothetical protein SA930_1717 [Staphylococcus aureus 930918-3]
 gi|259163273|gb|EEW47832.1| hypothetical protein SAD30_1022 [Staphylococcus aureus D30]
 gi|269941121|emb|CBI49507.1| putative single-stranded-DNA-specificexonuclease [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282594533|gb|EFB99518.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A9765]
 gi|294824691|gb|EFG41114.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus
           A9754]
 gi|304340704|gb|EFM06636.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198664|gb|EFU28992.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140477|gb|EFW32331.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144016|gb|EFW35785.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329314310|gb|AEB88723.1| Single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728355|gb|EGG64792.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 757

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  +  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVITLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++D  +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|304387849|ref|ZP_07370023.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis ATCC 13091]
 gi|304338114|gb|EFM04250.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis ATCC 13091]
          Length = 566

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    +V   D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|284024692|ref|ZP_06379090.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus subsp. aureus 132]
          Length = 757

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  +  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVITLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDDIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++D  +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|221141095|ref|ZP_03565588.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751464|gb|ADL65641.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 757

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  +  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVITLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++D  +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDVEEEASFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  Q+ + D +  E      +
Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568


>gi|291562781|emb|CBL41597.1| exonuclease RecJ [butyrate-producing bacterium SS3/4]
          Length = 573

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 156/581 (26%), Positives = 271/581 (46%), Gaps = 31/581 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILT 76
           W+    +   N    +  +  +  +  R++ NR +  +   + +L  ++  L  DP  + 
Sbjct: 8   WMLQTKRADFN---GLAMRLGVSPVAVRIMRNRGLLDEREMRKYLYGTLDDLY-DPRQMK 63

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDG 134
             + AA  I + +   +KI I GDYD+DG  S  ++++       +   +  IPDRI DG
Sbjct: 64  GMETAAGIIEKKLIEGKKIRIIGDYDIDGVCSTYILLKGFHRAAGNGQIDYEIPDRIRDG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-----VKSEEI 189
           YG N S++ +   +G   ++T D G  +   +  A   G+ V+V DHH+           
Sbjct: 124 YGINESIIRQAAEDGIDTLVTCDNGIAALKEISIAKQLGMTVVVTDHHEVPVDAYGQILP 183

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           PA A+V+P +  +      +C A V + ++ +IY  L          + + LL+  A+AT
Sbjct: 184 PADAVVDPKQDGETYPYHEICGAVVAWKLINVIYEDLGIPEH-----EWMELLEFAAIAT 238

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308
           V DV+ L   NR  V  GL       N GL+ L+E+ N+  + ++A ++G++IGP +NAG
Sbjct: 239 VGDVMKLQDENRLIVKYGLKKIGSTKNTGLRMLVEKNNLDINNLSAYHIGFVIGPCLNAG 298

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+  + +  R+L+  D   +  LA +L  LN  R+ M +    +A  +V       +  
Sbjct: 299 GRLKSAKVALRMLLEQDPDRVSGLADELKELNDVRKDMTAKGETEAIEQVERFYMSDK-- 356

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            V+VV     H  + G++A RL+E F +PSF ++  E     GSGRSIE + +       
Sbjct: 357 -VLVVFLPECHESLAGIIAGRLREHFHKPSFVLTRGEQS-AKGSGRSIEAYHMY--QGLC 412

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
               +LVK GGH MAAGL++E  +         + A   +      P   ID  +    V
Sbjct: 413 EVSDLLVKFGGHPMAAGLSIEESDIDEFRRRLNENAK--LTEDDFVPQIWIDVPMPFEYV 470

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546
           N  ++D L+   P+G GN  P+FA  +  ++++RV+      ++M   +        + F
Sbjct: 471 NEKIVDELKGLEPFGQGNEKPLFAQKSLTIRNVRVLGKNRNVVKMNLVTNTGHPFDGLLF 530

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                 L E   Q+    + +  +  VN + G++  Q  + 
Sbjct: 531 ADGDLFLEEQTGQN---TIDMIYYPDVNEYNGTRTLQAIIK 568


>gi|325206324|gb|ADZ01777.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M04-240196]
          Length = 566

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    + V  D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNTFPETLPSGQT--TLAVYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVREDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|289668836|ref|ZP_06489911.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 579

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 269/565 (47%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L +   AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + + + LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R     
Sbjct: 200 LALRKALRARGAFAERVEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPMAACLFDAEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ + GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQRFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F      +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFHAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +             + + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRG-------SEPARSVRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    P  
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPAT 576


>gi|325127939|gb|EGC50841.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis N1568]
          Length = 566

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/564 (30%), Positives = 263/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    + V  D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQT--TLAVYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVREDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|168699767|ref|ZP_02732044.1| single-strand DNA-specific exonuclease [Gemmata obscuriglobus UQM
           2246]
          Length = 592

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 28/592 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W  L      +    +     +  +VA++L+NR V     A+ FL+  +  L P PL 
Sbjct: 6   KQWHLLP--ADSSATNRLAGSARVSSVVAQLLLNRGVRDAAAARRFLDSPLGALHP-PLA 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    +AA R+V+A+    +I ++GDYDVDG    ++++R L     +   ++P R+ +G
Sbjct: 63  LPGVKEAAERVVRAVTARRRICVYGDYDVDGVTGTSILLRVLGKLGADVQFHVPLRLSEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYA 193
           YG N   + +    G QL+I+VDCG  S    Q A + G+++IV DHH++K   + P   
Sbjct: 123 YGLNSERLHELYRNGVQLVISVDCGIASIAEAQTARDLGLELIVTDHHEMKMGLDGPLLP 182

Query: 194 LVNPNRLD-----DLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVA 246
           + +          +    G L  AGV F +   + +     +     L   LL  + L A
Sbjct: 183 VADVLVHPRLRAAEPYPFGDLSGAGVAFKLAWAVAQRASGSEKVSADLREVLLDSVGLAA 242

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304
           L  V DVVPL   NR +V  GL   +   + GLKAL++         +TAE++G+ + P 
Sbjct: 243 LGLVADVVPLRDENRVFVRHGLERIKANPSVGLKALLDASGVKPDQVLTAEDVGFKLAPR 302

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GR+G ++    LL +    +   LA +L+  N +R+  E    + A+  V  Q  D
Sbjct: 303 LNAAGRLGCASFAVELLTTQSPTKARQLAEQLEAQNGDRQARERKYTQAAKELVEEQFAD 362

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGK 423
                 IVV    WHPG+VG++A+RL + FG+P+  I+ +  +    GSGRS+ GF +  
Sbjct: 363 ---DPAIVVGSPEWHPGVVGIVASRLVDYFGKPALVIAMQPNEAVSTGSGRSVTGFALHT 419

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +     + IL   GGHA AAGL V       L D F  +  +  P         +D  +
Sbjct: 420 ALVAC--DDILEGHGGHAAAAGLKVRPDRIPALRDRFNAYVRSHYPGGAPAQTLTLDAEV 477

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN----LAHLQMTFESQDSE 539
             SA+   LI+ L+   PYGAGNP P F     K+++ R++       H+       D  
Sbjct: 478 PLSALTFGLINDLDKLEPYGAGNPRPKFLAAGLKVEAARLIGTGEIQRHMDFRVRQGD-T 536

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T++ +A+ +      E LM + G    +     +N W+GS++ +L+V+D  P
Sbjct: 537 TIRCVAWGMADRM--EELMSAGGDCC-LAFTPKINEWKGSRKLELQVIDLKP 585


>gi|218767952|ref|YP_002342464.1| putative single-stranded-DNA-specific exonuclease [Neisseria
           meningitidis Z2491]
 gi|121051960|emb|CAM08268.1| putative single-stranded-DNA-specific exonuclease [Neisseria
           meningitidis Z2491]
 gi|319410201|emb|CBY90539.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis WUE 2594]
          Length = 566

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    +V   D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|91784237|ref|YP_559443.1| RecJ exonuclease [Burkholderia xenovorans LB400]
 gi|91688191|gb|ABE31391.1| exonuclease RecJ [Burkholderia xenovorans LB400]
          Length = 568

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 184/572 (32%), Positives = 269/572 (47%), Gaps = 32/572 (5%)

Query: 32  AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
            I  +H +  ++AR+   R V   D  +      +  L+P P+ L  C+ AA  +  AI 
Sbjct: 15  EILTRHGLHPVLARLYAARGVCMPDEIET----GLARLVP-PVALKGCEDAAALLADAIQ 69

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFIN 147
           +  ++++  DYD DGA + A+ +R L          +P+R   GYG  P ++    +   
Sbjct: 70  SQRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEIVALAARNAA 129

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
               L+ITVD G  S D +Q A   GIDV+V DHH    E  PA A+VNPN+        
Sbjct: 130 GKPDLLITVDNGIASVDGVQAANALGIDVLVTDHHLPGDELPPARAIVNPNQPGCTFPSK 189

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
            +   GV+F VL+ +   LR+            L  LLDLVAL TV DVV L G NR  V
Sbjct: 190 CIAGVGVMFYVLLALRAELRRRGAFNDNFPEPRLDGLLDLVALGTVADVVKLDGNNRVLV 249

Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +GL   R+       A + R       +A   +LG+ +GP +NA GR+ + +LG   L 
Sbjct: 250 AQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSDMSLGIECLT 309

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
           +DD      LA +LD +N+ RR +E+ M +QA   +     D    + I +    WH G+
Sbjct: 310 TDDIGRAWDLAQQLDAMNRERREIEAGMQQQALEDLSA--IDPDGTTTITLFNPDWHQGV 367

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           +G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      E G++VK G
Sbjct: 368 IGIVAGRLKEKFHRPSFTFALADDSGRTVKGSGRSIAGFHLRDALDLISKREPGLIVKFG 427

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLT+   +  R    F+      +     +   + DG L  +      ++ML+ 
Sbjct: 428 GHAMAAGLTLAAADVPRFTAAFEAVGREWLSEEALSRTVETDGELEDAYFTPQFVEMLD- 486

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           A  +G G P PVF+     + S  +V   HL++    +  +   AI F    T       
Sbjct: 487 AAVWGQGFPAPVFSGE-FDIVSQALVKDKHLKLQLV-RGRQRFNAIWFNHTDT------- 537

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                R  V   L  + W G  R QL V  A+
Sbjct: 538 --LPARTTVAYRLASDTWNGVSRVQLIVEHAA 567


>gi|172061071|ref|YP_001808723.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria MC40-6]
 gi|171993588|gb|ACB64507.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria MC40-6]
          Length = 565

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 181/581 (31%), Positives = 274/581 (47%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--IDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +      
Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT+   +  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         +   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 564


>gi|308389016|gb|ADO31336.1| putative single-stranded-DNA-specific exonuclease [Neisseria
           meningitidis alpha710]
 gi|325129988|gb|EGC52783.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis OX99.30304]
 gi|325135943|gb|EGC58553.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M0579]
 gi|325202370|gb|ADY97824.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M01-240149]
 gi|325207878|gb|ADZ03330.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis NZ-05/33]
          Length = 566

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTSFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|21242609|ref|NP_642191.1| single-stranded-DNA-specific exonuclease [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21108071|gb|AAM36727.1| single-stranded-DNA-specific exonuclease [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 578

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 174/564 (30%), Positives = 272/564 (48%), Gaps = 24/564 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L +   AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAGLQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + + ++LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R     
Sbjct: 200 LALRQVLRARGAFAQRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFQAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  + +RG    QL V    PV
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPV 575


>gi|115352204|ref|YP_774043.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ambifaria AMMD]
 gi|115282192|gb|ABI87709.1| exonuclease RecJ [Burkholderia ambifaria AMMD]
          Length = 565

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 181/581 (31%), Positives = 274/581 (47%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R  +  PG+ AL       +   +  +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +      
Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT+   +  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         +   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 564


>gi|302342942|ref|YP_003807471.1| single-stranded-DNA-specific exonuclease RecJ [Desulfarculus
           baarsii DSM 2075]
 gi|301639555|gb|ADK84877.1| single-stranded-DNA-specific exonuclease RecJ [Desulfarculus
           baarsii DSM 2075]
          Length = 573

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 172/579 (29%), Positives = 266/579 (45%), Gaps = 18/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74
            +W      +  + A  + ++  +P +  ++L NR  V    A+DFL P +  L P P  
Sbjct: 8   KKWRVR--NQSPSEAARLARELGLPPLAGQLLCNRGLVDAASARDFLRPRLADL-PGPDG 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                KAA  + +A+   + I + GDYD DG  + AL++ FL  C       +P R+ +G
Sbjct: 65  FQGMGKAASLVAEAVQAGQVIGVAGDYDADGVTATALLVDFLRQCGGKVVWDLPHRLSEG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG  P   ++    GA+L+ITVDCG +  D +  A   G+ VIV DHHQ+          
Sbjct: 125 YGFLPPRAQRLAQAGARLVITVDCGVSDIDGVGAAKELGLTVIVTDHHQLPPGVAAPADA 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252
           +   + D  +   HL   GV F +       LR           +L   LDLVA+ T  D
Sbjct: 185 MVNPQQDACALAKHLAGVGVAFYLAAACRAELRARGWFATRPAPNLRQSLDLVAVGTCAD 244

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           VVPL+G NR  V +GL+V  + G  GL+AL +      P+ A++L + + P INA GRI 
Sbjct: 245 VVPLVGHNRILVREGLLVLNQGGRRGLRALADASGARGPLDAKDLAFALAPRINAAGRID 304

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                  LL+  D  +    A  LD LNQ RR +E  ML QA   V ++    Q+A ++V
Sbjct: 305 HPAQALELLLCQDEPQAAQRARLLDQLNQQRRAIEQEMLGQALEDVASEPRH-QRARLLV 363

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A+R+ E  G+P+   +  E+G  +GSGRS+EGF + +       + 
Sbjct: 364 LGRAGWHRGVLGIVASRVVEATGKPALLFA-IENGTAVGSGRSVEGFHLQRA--LVGVKH 420

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGHA AAG+T    N   L     + A   +P        +++   + S +   L
Sbjct: 421 LLQHFGGHAQAAGMTTATANLPELWRQLDQAAQAALPPGEGAASLELETAAHVSQLGPGL 480

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +D L    P+G  NP P+       + S   V   HL++      +  L A         
Sbjct: 481 VDFLADLAPHGQANPEPLLLVEGATVLSASSVGRGHLRLLL-GGAAAPLPAFWLGHGE-- 537

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               L    G  + +     V+ + G    +L + D  P
Sbjct: 538 ----LAADIGGPLSLACQPRVSTYGGRH-LELFIHDLRP 571


>gi|148358991|ref|YP_001250198.1| single stranded DNA specific exonuclease RecJ [Legionella
           pneumophila str. Corby]
 gi|148280764|gb|ABQ54852.1| single stranded DNA specific exonuclease RecJ [Legionella
           pneumophila str. Corby]
          Length = 516

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/519 (32%), Positives = 253/519 (48%), Gaps = 19/519 (3%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN 147
           + + ++I+I GD+D DGA S AL +  L           +P+R   GYG  P+++E    
Sbjct: 1   MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASK 60

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
               LIITVD G  S++ +  A   GIDV++ DHH        A A+VNPN+   L    
Sbjct: 61  WQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSK 120

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
            +   GV+F V++ + R L   N          ++ S LDLVAL TV DVV L   NR  
Sbjct: 121 SIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIM 180

Query: 264 VVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +G+M  R+ Q   G+KALIE      S +   +LG+ I P +NA GR+ + +LG   L
Sbjct: 181 VNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL 240

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDR 377
           I+ D +       +LD LN  RR +ES M EQA   +     + ++       + +    
Sbjct: 241 ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKT 300

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILV 435
           WH G++G+LA R+KEK+ RP  A +   + +  GS RS+   +I  +++       G+++
Sbjct: 301 WHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLIL 360

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGHAMAAGL++           F       +           DG L +  +N+    +
Sbjct: 361 KFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELNLETAQL 420

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLG 554
           ++ AGP+G     PVF     ++   R+V   HL+MT   SQ  E L AIAF V      
Sbjct: 421 IQQAGPWGQAFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWP 479

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                 R K +H    L +N+++G  R QL +   +PV+
Sbjct: 480 ----NHRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQ 514


>gi|325662332|ref|ZP_08150941.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471334|gb|EGC74557.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 571

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/574 (29%), Positives = 290/574 (50%), Gaps = 28/574 (4%)

Query: 30  ALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
              I QK  I  I+AR++ NR ++ +   + +LN +I  L  D +++ D D+A   + + 
Sbjct: 13  FQEIAQKFHISPILARLIRNREITDEEEIRLYLNGTIAELH-DGILMKDMDRAVEILSEK 71

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I   + I + GDYD+DG  +  +++  +       +  IPDR+ DGYG N  L+ + +  
Sbjct: 72  IREKKPIRVIGDYDIDGVNATYILLEGIEKLGGVVDSDIPDRMKDGYGLNQELINRALEA 131

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE---------IPAYALVNPNR 199
           G   IIT D G  + + + YA   G+ +IV DHH++  EE          PA A+V+P R
Sbjct: 132 GIDTIITCDNGIAAAEEIAYAKKMGMTIIVTDHHEIPYEEKNGEKVYELPPADAVVDPKR 191

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           +D       LC A V + ++  ++ ++ QD       D+  L++ VA+ATV DV+ L+G 
Sbjct: 192 IDCEYPFSSLCGAAVAYKLVETLFNVMGQD-----VEDVDYLMENVAIATVGDVMDLVGE 246

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGS 318
           NR +V +GL + +   N GL ALIE   +    ++A ++G++IGP +NAGGR+  +    
Sbjct: 247 NRIFVKQGLEMLKCTKNYGLDALIECTGVDRAHLSAYHIGFVIGPCLNAGGRLDTAKRAL 306

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            LL +   +E ++LA  L  LN +R+ M  A +E+A   V  +   +Q+  V+V+     
Sbjct: 307 ELLRASSRREADLLAGDLKALNDSRKEMTQAGVEEAVKMV--ETTALQEDKVLVIFLPDC 364

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H  + G++A R++E++ +P F ++  E G   GSGRSIE +D+ + +S    + +  K G
Sbjct: 365 HESLAGIIAGRIRERYHKPVFILTKAEQG-AKGSGRSIENYDMYEEMSKC--KALFTKFG 421

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH MAAGL++   N         +    ++          ID  +    V   L++ LE 
Sbjct: 422 GHKMAAGLSLPEENIEVFRRQLNE--KTVLTEEDFCEKVSIDMQMPLRYVTEELVEELEL 479

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G GN  PVF   +  + + R++      L+M  +      + AI F      L + 
Sbjct: 480 LEPFGKGNTKPVFVEKDMLVLNSRILGKNQNVLKMQVKDLGGTVMDAIYFGEAQECLEKI 539

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  G ++  T +  VN +RG K  Q+ + +  
Sbjct: 540 --RRAGGKITATYYPSVNEFRGQKTLQIVIQNYR 571


>gi|326318411|ref|YP_004236083.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375247|gb|ADX47516.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 571

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 177/578 (30%), Positives = 269/578 (46%), Gaps = 30/578 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
             RA+   ++  +  ++AR+   R V+   A D L+ ++  L+P P  L    +AA  + 
Sbjct: 9   PPRAVWALEQAGVHPLLARLYAARGVT---AHDELDDALARLLPPP-GLRGTREAAALLA 64

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145
           +AI    +I++  DYD DGA + A+ +R L        +  +PDRI DGYG +P++  + 
Sbjct: 65  EAIAQDRRIVVVADYDCDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRV 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
              GA L++TVD G  S + +  A   G+ V+V DHH    E  PA A+VNPN+      
Sbjct: 125 HERGADLLVTVDNGIASVEGVAEARALGLSVLVTDHHLPGPELPPADAIVNPNQPGCTFE 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
              +   GV+F VL+ +   LR+           L  LL LVAL TV DVV L   NR  
Sbjct: 185 SKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDANNRRL 244

Query: 264 VVKGLMVARRQGNPGLK-ALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R    P    AL +     + + T  + G+ +GP INA GR+ +  LG   L
Sbjct: 245 VAQGLKRIRAGHMPAGIAALFDAAGRKASVATTFDFGFALGPRINAAGRLADMTLGIECL 304

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380
           ++DD      LA  LD +N+ RR +E  M EQA     +   +  +  + + V    +H 
Sbjct: 305 LTDDPGRAAELARTLDAINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHE 364

Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434
           G+VG++A+R+K++  RP+F      +  ++ +  GSGRSI GF +   +        G++
Sbjct: 365 GVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGSGRSIPGFHLRDALDLVAKRHPGVI 424

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGHAMAAG TV +  F      F + A   + A         DG L+       L+D
Sbjct: 425 LKFGGHAMAAGCTVAKDQFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRAELVD 484

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGTP 552
            L     +G G   P F     ++ S R+V     HL +    Q    +  I F      
Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVEIVSQRLVGEGKNHLSLKLLHQ-GRPVDGIWFGHTE-- 539

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      R+ +   L VN W+G +R Q  V  A 
Sbjct: 540 -------PLPARVLLAFRLDVNEWKGERRVQFLVEGAQ 570


>gi|253733113|ref|ZP_04867278.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728869|gb|EES97598.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 756

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 158/588 (26%), Positives = 284/588 (48%), Gaps = 29/588 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  K   RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +   +   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL++D+ +E   LA +++  N+ R+ + + + E+A A   T+         +++  
Sbjct: 292 LACELLMTDE-EEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 348

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++
Sbjct: 349 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH MAAG+T++  N   L +   K+   +       PV ++D +L  + + I  I 
Sbjct: 407 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 466

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G     P+F   +  + S++ +     HL++T    +   L    F   G  
Sbjct: 467 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 522

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
             E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 523 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 567


>gi|325925179|ref|ZP_08186592.1| exonuclease RecJ [Xanthomonas perforans 91-118]
 gi|325544433|gb|EGD15803.1| exonuclease RecJ [Xanthomonas perforans 91-118]
          Length = 579

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L +   AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGMSPALVDELAALQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEMLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + +  +LR+          DL  LLDLVA+ TV D+VPL   NRA V  GL   R     
Sbjct: 200 LALRSVLRKRGAFAGRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPMAACLFDADWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F      +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAVLATFEQAFLAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKDRHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    PV 
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPVT 576


>gi|317470622|ref|ZP_07930008.1| single-stranded-DNA-specific exonuclease RecJ [Anaerostipes sp.
           3_2_56FAA]
 gi|316901913|gb|EFV23841.1| single-stranded-DNA-specific exonuclease RecJ [Anaerostipes sp.
           3_2_56FAA]
          Length = 574

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 161/585 (27%), Positives = 279/585 (47%), Gaps = 30/585 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           +W     +    R   I +   I  ++AR++ NR+++  +  + +L+ ++  +  DP ++
Sbjct: 3   KWFISKKKADFVR---IGETFGIDPVIARLIRNRDITGEEDIRRYLSGTLSDI-SDPFMM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D ++A R + QA+    KI I  DYDVDG  S  ++ + LS      +  IPDRI DGY
Sbjct: 59  KDAEEACRLLRQAVRRGTKIRIISDYDVDGVISNYILWKSLSDLGGTVDFVIPDRIQDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  +      EG  L+IT D G  ++D ++ A + G++VIV DHH+V           
Sbjct: 119 GMNSEMAVNAKKEGIGLMITCDNGIAAFDPVKKAKDLGMEVIVTDHHEVPYQMEEGRKRE 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+VNP +         LC AGV F ++  +YR   +++      +L  LL  +A
Sbjct: 179 MLPPADAVVNPKQETCAYPYKQLCGAGVAFQLMRALYRAEGRED-----KELEPLLCFLA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           +ATVCDVV L   NR +V +GL       N GL+AL+   N   + + + +LG++IGP I
Sbjct: 234 IATVCDVVDLTEENRIFVREGLNRIGLTQNTGLRALLRVHNLEETTVNSYHLGFVIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +    RL +  D    E  A +L  LN  R+ M +  +++A  ++       
Sbjct: 294 NASGRLESAEKVLRLFLEKDMAAAEETAQELKDLNDQRKGMTNEGVKEALDQIEQNGYG- 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V+V+     H  I G++A R+K+K  RP F ++  ++G   GSGRSIE + + + +
Sbjct: 353 -KDKVLVIYLPDCHESIAGIIAGRVKDKVHRPVFVLTKGKEGI-KGSGRSIENYHMFEAM 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +    + +  + GGHAMAAG ++   +               +          ID  +  
Sbjct: 411 NEV--KDVFARFGGHAMAAGCSLSDESKVEEFRRRINGYCE-LKENDFIKKVSIDVDMPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             ++  L+  +    P+G  N  P+FA     ++ I+V       ++++  S     +  
Sbjct: 468 DYISAELVRQMAVLEPFGKENKRPLFAHRKLFIERIQVFGDNRNVIRLSLLSDRGTRMTG 527

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           + F      +    M    + +  T +  +N +RG++  Q+R+  
Sbjct: 528 MIF--EEEDIFREKMGEGKQYITCTYYPDINVYRGNESLQIRIQH 570


>gi|294666708|ref|ZP_06731944.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603533|gb|EFF46948.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 579

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L +   AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLRNSGVAAELLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + + ++LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R     
Sbjct: 200 LALRKVLRARGAFAQRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWGQAREIAGA 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFQAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    P  
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPAT 576


>gi|153810177|ref|ZP_01962845.1| hypothetical protein RUMOBE_00558 [Ruminococcus obeum ATCC 29174]
 gi|149833356|gb|EDM88437.1| hypothetical protein RUMOBE_00558 [Ruminococcus obeum ATCC 29174]
          Length = 570

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 165/584 (28%), Positives = 286/584 (48%), Gaps = 32/584 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W+    +        I  +  I  ++AR++ NR++  +   + +L  ++  + P P  +
Sbjct: 3   KWMVYNKKADFQ---KIGSEFGIDPVIARLIRNRDIQDMKEIRSYLYGTLAEI-PSPWKM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D ++A + + + I   +KI I GDYD+DG  +  ++++ L   + N + YIPDR+ DGY
Sbjct: 59  KDMERAVQILQKKITQKKKIRIIGDYDIDGVTATCILLKGLKRLNANVDTYIPDRVKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  L++K + +G   I+T D G  +   ++YA  +G+ VIV DHH +   +       
Sbjct: 119 GMHEQLIDKALEDGIDTILTCDNGIAAAAEIEYAKKEGLTVIVTDHHDIPFRDTEDGRIW 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+VNP + D L    ++C A V + ++  +Y  L  D     + ++   L+L A
Sbjct: 179 IIPKADAVVNPKQNDCLYPNKNICGAVVAWKLIWALYERLGID-----SDEIWDFLELAA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ L G NR  V +GL         GLKALI   N+  + ITA ++G++IGP I
Sbjct: 234 IATVGDVMDLQGENRIIVKEGLKKLSSTSFEGLKALICVNNLEGAEITAYHVGFVIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL++D+ ++   LA  L  LNQ+R+ M      QA   +  + +++
Sbjct: 294 NASGRLDTAARSLELLLADNMEDAMKLADDLYDLNQSRKAMTEQGKGQAIQSI--EENNL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V+VV     H  + G++A R++E + +P F ++   DG   GSGRSIE + +    
Sbjct: 352 GKDRVLVVYLPDCHESLAGIIAGRIREAYNKPVFVLTKGSDGV-KGSGRSIEAYSMY--E 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +L++ GGH MAAGL++E  N               +      P   ID  +  
Sbjct: 409 ELVKCSDLLMQFGGHPMAAGLSMEEKNVELFRRRLNDNC--TLTEQDLIPKIMIDVPMPI 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQA 543
           S ++  L + L+   P+G GN  P+FA  N +   IRV        +M     +   + A
Sbjct: 467 SYLSKKLTEQLKVLEPFGKGNSKPLFAQKNLRAVGIRVFGRNRNVAKMLLIDGNGIKMDA 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F        +F+       + VT +  +N ++G +  Q+ + 
Sbjct: 527 VYFGEA-QEFVDFVQAH--DTISVTYYPEINVFQGRENLQVVIK 567


>gi|320162234|ref|YP_004175459.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila
           UNI-1]
 gi|319996088|dbj|BAJ64859.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila
           UNI-1]
          Length = 767

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 164/589 (27%), Positives = 283/589 (48%), Gaps = 26/589 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           F+W+           L +T    +   +AR+L +R ++    A+ FLNP+     P P  
Sbjct: 2   FQWIEPRENGIPAALLEVTGGQGL---IARILAHRGITDPQRARAFLNPAFYQPAP-PED 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L   + A +RI +AI   E+I ++GD+DVDG  + AL+++ L         ++P R  +G
Sbjct: 58  LPGMEIACQRISRAIQRGERIWVWGDFDVDGQTATALLVQTLRWLGAEPRYHVPVRETEG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +G N   +EK + +GA L+IT D G T+++AL+YA  + ++VIV DHH +     PA   
Sbjct: 118 HGVNIPYLEKILEQGADLMITCDTGITAFEALEYARERSLEVIVTDHHLLGERLPPALTH 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           + P  L +      L   GV + + + +     Q  +         LLDLVAL  V DV 
Sbjct: 178 LTPRLLPENHPMCGLPGVGVAYQLALALLTRAGQPERAQ------ELLDLVALGIVADVA 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLK-ALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
             IG  R  + +GL   RR    G++  L         +  E+LG+++ P +NA GR+G+
Sbjct: 232 LQIGDTRYLLQQGLQELRRGKRLGVRAVLERAEVSRLWLNEEHLGFVLAPRLNALGRLGD 291

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +N    LL + D     +LA +L++LN  R+ + + +L  AE ++ T    + +A V+++
Sbjct: 292 ANPAVELLTTTDEARARVLAEELEILNMRRQFLTAQVLAAAEDRLRTDS-SLLRAPVLIL 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           E  +W PG++G+ A+ L +++ RP   +S    G   GS RSIEG DI   ++    + +
Sbjct: 351 ENSQWAPGVIGIAASHLAQRYHRPVILMSASSSGILRGSARSIEGVDITAAITAC--KDL 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL--ITTPVFKIDGVLNASAVNIA 491
           L+  GGH MAAGL +             +     V AL  +     +++ VL    +++ 
Sbjct: 409 LIGFGGHPMAAGLALMAEQLPAFRACLTRQVQAQVDALGGLPERTLQLEAVLRLEEIHLK 468

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549
           + + LE   P+G GNP P    P+ ++ ++  +     HL++T E +       + +   
Sbjct: 469 VAEALEQLAPFGPGNPTPALMVPDVRISNVIAIGRNDDHLRITVEDRMGNERGVLWWNGA 528

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
              L E           +   L  + ++G++  Q+  LD  P +     
Sbjct: 529 NADLPEGW-------FDLACTLRASTYQGTRDVQVEWLDWRPRQVEQID 570


>gi|167563345|ref|ZP_02356261.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           oklahomensis EO147]
 gi|167570517|ref|ZP_02363391.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           oklahomensis C6786]
          Length = 564

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 177/564 (31%), Positives = 268/564 (47%), Gaps = 27/564 (4%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +H +  ++AR+   R ++       +  ++  L+P P  L  C  AA  +  A+    K+
Sbjct: 19  RHGLHPVLARLYAARGITSPAD---IETALSRLVP-PAQLKGCANAAALLADALEAGRKM 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
           ++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E        L+IT
Sbjct: 75  LVVADYDCDGATACAVAVRGLRMFGATIDYLVPNRFEYGYGLTPEIVELAAARKPDLLIT 134

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G  S D +  A  +GIDV+V DHH        A A+VNPN+        H+   GV+
Sbjct: 135 VDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFPSKHIAGVGVM 194

Query: 216 FLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           F VL+ +   LR             L  LLDLVAL TV DVV L G NR  V +GL   R
Sbjct: 195 FYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGLQRIR 254

Query: 273 RQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                   A + R       +A   +LG+ +GP +NA GR+ + +LG   L +DD     
Sbjct: 255 NGRMQPGIAALFRAAAREARSASGFDLGFGLGPRLNAAGRLSDMSLGIECLTTDDIGRAW 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I +    WH G++G++A RL
Sbjct: 315 ELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQGVIGIVAGRL 372

Query: 391 KEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           KE+F RP+F  +  +D      GSGRSI GF +   +      E  ++V  GGHAMAAG+
Sbjct: 373 KERFHRPAFTFAHADDSGARVKGSGRSIPGFHLRDAIDLISKREPDLIVTFGGHAMAAGV 432

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  N  R    F+  A   +       V + DG L  +     ++++L+S   +G G 
Sbjct: 433 TLDTENVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYFTPQVVELLDS-AVWGQGF 491

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P P+F+     + S  +V   HL++    +  +   AI F                 R  
Sbjct: 492 PAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHAE---------PLPARAT 540

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           V   L  + W G  R QL V  A+
Sbjct: 541 VAFRLASDTWNGMTRVQLIVEHAA 564


>gi|15676738|ref|NP_273883.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis MC58]
 gi|7226077|gb|AAF41253.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis MC58]
 gi|316984247|gb|EFV63223.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis H44/76]
 gi|325140010|gb|EGC62539.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis CU385]
 gi|325200478|gb|ADY95933.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis H44/76]
          Length = 566

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 263/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++A++  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIAQLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    +V   D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|220904677|ref|YP_002479989.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868976|gb|ACL49311.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 578

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 170/587 (28%), Positives = 274/587 (46%), Gaps = 21/587 (3%)

Query: 16  FRWVSLLGQEGINRAL--AITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
             W+      G    L  +  ++ +I  ++  VL  R  S   A   FL+  +  L P P
Sbjct: 2   KNWLFRTPPAGGPVCLPASWAEELSISPLLLEVLWRRGFSHKQAINAFLDARLDSLTP-P 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
                  +AA+ +   +   +K+ ++GDYDVDG  +  L++  L    + A  +IPDR  
Sbjct: 61  HRWPQMPEAAQLLADELLAGKKLAVWGDYDVDGITASTLVLDVLESHGIEALWHIPDRRT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   ++    +G ++++TVDCG    DA+ +A   G+ V+V DHH  + +  PA+
Sbjct: 121 EGYGLNVKQIDALAAQGCRILLTVDCGIADVDAVNHARRIGMTVVVSDHHLPQDDLPPAH 180

Query: 193 ALVNPNRLDDLS-GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           AL NP    + S    HL   GV F ++  +   L           +   LDLVAL T+ 
Sbjct: 181 ALCNPRMCPEESLPCPHLAGVGVAFYLMGAVNAAL--APHTGKKHRMDKCLDLVALGTLA 238

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGG 309
           D++PL   NR  V  GL        PG+ AL     +   + +T+  + + + P INA G
Sbjct: 239 DIMPLTSENRILVRGGLGHLADASRPGIAALKVASGMDAKTRLTSGQVSFQLVPRINAAG 298

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           RIG+  L  RLL   D      LA +LD LN  R+  E+ +  +A A+VL      +  +
Sbjct: 299 RIGDGGLALRLLRQKDFSSALPLAQQLDQLNTERKQAENTIHSEARAQVLDML-SREPRA 357

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            +V+ G  WHPGIVG++A+R+ E+F RP+  +  ++ G   GSGRS+  FD+        
Sbjct: 358 SLVLYGQDWHPGIVGIVASRIVEEFYRPTIIL-CQDQGSLKGSGRSVREFDLH--AGLCQ 414

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV- 488
               L   GGH +AAG+ +   N  R    F+ F    +     +P   ++  L+ +   
Sbjct: 415 TASSLSGFGGHRLAAGVRLPLENLARFRTEFENFVAQQLGTNPLSPSLTLECQLDFAQAS 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFES-QDSETLQAIA 545
           N + +  LE   P+G GN  PVFA P   ++    +     H+++  +  Q    L A A
Sbjct: 475 NQSFLKELEMLQPFGPGNAEPVFASPPLLVKERSPLGRGGEHVRLRLQDEQSGLILTAKA 534

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +R+  T     +    GKR+ V     ++ + G     + + D  P 
Sbjct: 535 WRMAQTLTASMI----GKRIRVAYTPRLDTYNGITSVDVGIKDWQPA 577


>gi|261379846|ref|ZP_05984419.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria subflava
           NJ9703]
 gi|284797540|gb|EFC52887.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria subflava
           NJ9703]
          Length = 566

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+   R+V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GTDPLIARLCAARDV---QSPAELDDKLAALLPY-QTLTNCEAAADRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L++TVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR  N         +L   LDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRHRNYFSDGLKEPNLGDFLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPLGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRYPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAK-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|261392806|emb|CAX50387.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis 8013]
          Length = 566

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    + V  D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQT--TLAVYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVREDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|167581340|ref|ZP_02374214.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           thailandensis TXDOH]
          Length = 564

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 177/582 (30%), Positives = 271/582 (46%), Gaps = 30/582 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
             +          A+  +H +  ++AR+   R + S    +     ++  L+P P  L  
Sbjct: 3   RIVTRPAVPAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAAALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV
Sbjct: 177 NQPGCTFPSKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R        A + R       +A   +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   L +DD      LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I 
Sbjct: 297 DMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKE+F RP+F  +  +       GSGRSI GF +   +     
Sbjct: 355 LFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  ++V  GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
              ++++L+ A  +G G P P+F+     + S  +V   HL++    +  +   AI F  
Sbjct: 475 TPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNH 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          R  +   L  + W G+ R QL V  A+
Sbjct: 532 AE---------PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564


>gi|160945517|ref|ZP_02092743.1| hypothetical protein FAEPRAM212_03046 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443248|gb|EDP20253.1| hypothetical protein FAEPRAM212_03046 [Faecalibacterium prausnitzii
           M21/2]
          Length = 710

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 189/575 (32%), Positives = 290/575 (50%), Gaps = 27/575 (4%)

Query: 23  GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             E     LA  QK     ++A +L  R ++    A   L       + DP +LTD D A
Sbjct: 42  SDEKYKAVLAAQQKEN--ALLAGILAARGITDPAEALTLLAG--EEELSDPALLTDMDAA 97

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
            +RI QAI N E I +FGDYDVDG  + AL+ + L     +    +P R  DGYG + + 
Sbjct: 98  CQRIWQAIDNGETIAVFGDYDVDGVTATALLYQHLKGMGASVKCMLPSREGDGYGLSKNA 157

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           ++   N+G  LI+TVD G ++ +   +A + G+D+I+ DHH        A A+V+P R D
Sbjct: 158 IQSMHNKGCTLIVTVDNGISAVEEADFAASLGMDLIITDHHLPPETLPKAVAVVDPRRED 217

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
           D S    LC AGV F +   +       +  P    L    DL A+ TV DV+PL+G NR
Sbjct: 218 DHSPFKGLCGAGVAFKLCAAL-------DGCPPEEMLDYCGDLAAVGTVADVMPLVGENR 270

Query: 262 AYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V  GL   ++   PG  AL+E V     PITAEN+ Y I P INA GR+  +    +L
Sbjct: 271 TLVKAGLRQLQQTDRPGFGALLEEVGLAGKPITAENISYAIAPRINAAGRMDNAVTALQL 330

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           ++ +D    E LA KL+ +N +R+  E  + + AE  +  Q + +    ++++ G  WHP
Sbjct: 331 VLCEDPDRAEELAHKLNEINAHRQETEQQIFKAAEELLEQQPERLDDR-IMLLWGRDWHP 389

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++G++A+RL E+ GRP   ++ +E G+G GSGRS++GF++   +       +LV+ GGH
Sbjct: 390 GVIGIVASRLVERTGRPVIVVTIDEHGEGKGSGRSVQGFNLHACIGSC--ADLLVRYGGH 447

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           AMAAGL+V   N   L     ++A    P L  TP    D  ++   + +  +  L+   
Sbjct: 448 AMAAGLSVREENLPELRRRLNEWAARECPVLH-TPPLTCDVTIHLDRITVESVRHLDQLA 506

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           PYGA NP PVF   +  +  +  V+   H ++     +S    A+ F +    L   L  
Sbjct: 507 PYGAENPTPVFLLQSAVVDGVYPVSEGRHSRLRLRQGNSCLY-AVWFGMPAEQLPYAL-- 563

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQL--RVLDASPV 592
             G  +    +L V  +  ++  QL  R++D  P 
Sbjct: 564 --GDVVDAALNLSV--YESARGAQLSGRIIDLHPA 594


>gi|313902370|ref|ZP_07835773.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467301|gb|EFR62812.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter
           subterraneus DSM 13965]
          Length = 788

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 188/585 (32%), Positives = 277/585 (47%), Gaps = 30/585 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           G RW          + LA      +  + ARVL  R  +    A+  L+     L+ DP 
Sbjct: 7   GRRWQVRPADPAAAQRLARAL--GVTPLTARVLAARGWTDVAAARRLLDGH--PLLHDPF 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRI 131
           +LT  + A  RI  A+   E I+I GDYDVDG A+ AL+ R L          +YIPDR 
Sbjct: 63  LLTGMEAAVARIRTALARDEGILIVGDYDVDGVAAAALLYRGLQDFEPGARVQVYIPDRH 122

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG  P  +E     GA L+ITVD G  ++  L  A  +G+DVIV DHHQ + E  PA
Sbjct: 123 GEGYGVPPGALEAAQAMGATLLITVDNGIAAHGPLGEAARRGLDVIVTDHHQPQGELPPA 182

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP+R D       LC  GVVF +L  +   L  +   P+ + L       ALATV 
Sbjct: 183 LAVINPHRPDSRYPWRGLCGTGVVFKLLQAL---LGDEPASPVWWQL------AALATVA 233

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310
           DVVPL   NR  V +GL        PGL AL E      + + A  + +++ P +NA GR
Sbjct: 234 DVVPLQDENRTLVQRGLAELAAAPLPGLAALAEVAGLGDTRLDAHGVAFILAPRLNAAGR 293

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G +     LL +D  +    LA+ +D LN+ RR  E   L QA  ++  + + +    V
Sbjct: 294 MGSAYQAWELLATDQRERARALALAVDQLNRLRRQQEDLALGQALQRL-ERGEGLYGDEV 352

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I +    WH G++G++A+RL + F RP+     ++     GSGRSI GF + + ++    
Sbjct: 353 IALAHPGWHQGVLGIVASRLVDLFHRPALV-GRQQAEWITGSGRSIAGFHLFRALASC-- 409

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+  + GGHA AAG T+    +  L +     A   +      PV ++D V     + +
Sbjct: 410 AGLFARFGGHAQAAGFTLPAARWRELGERLAAEARRSLTPAQRVPVVEVDAVARPEELTV 469

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVY 549
             +  LE   P+G GNP PV A  +      R V    HL++ +         A+AF + 
Sbjct: 470 EAVRQLERLAPFGEGNPEPVIALADLPPAVARAVGGGEHLRLEWPGG----WSAVAFGLG 525

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                     ++  ++ V     V+ +RG+ R  LRV D  P E 
Sbjct: 526 EL----ARQLAQVPQVEVAVRPRVDAYRGNLRVDLRVQDLRPAEP 566


>gi|257066402|ref|YP_003152658.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           prevotii DSM 20548]
 gi|256798282|gb|ACV28937.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus
           prevotii DSM 20548]
          Length = 576

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 176/589 (29%), Positives = 282/589 (47%), Gaps = 30/589 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
            W     +E     L   +   I  + A +L NR++        F+NPS+  L  DP +L
Sbjct: 3   NWYIYNKKENYINNL---KNKDITKLEALILANRDIVDPFVVDMFINPSLDKLH-DPFML 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   I++ I N+ +I IFGDYD DG ASV  ++  L     N +  IP R+ DGY
Sbjct: 59  KDVDKAIDLIIETIQNNGEIRIFGDYDQDGIASVMTLLDGLLFYYDNISYDIPHRVEDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G + ++ EK I +   L+IT D G T +D ++      I+VIV DHHQ++ E+       
Sbjct: 119 GISNNMSEKAIADKVSLVITCDNGITGFDQVKKLKENNINVIVTDHHQIEKEDNDGWVNQ 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A  ++NP+RLD       LC AGV F ++  +Y  L  D        L SLL+ VA
Sbjct: 179 ILPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQALYMKLEGD-----FEYLFSLLEYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCD+V L   NR +V++GL          +KAL+E       I    LG+++GP +N
Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRLNATEKYAIKALLEEAGWRKEINEYTLGFILGPLMN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  + L   LL+ +D  ++   A +L  LN  R+ +    + +       +  D  
Sbjct: 294 ATGRLSTAKLAIELLMEEDIDKIHEYANELVNLNNKRKSLTEEGINKCIKIAEDKSYD-- 351

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMV 425
           +  VIV+        I G++A R+KEK+ RP+  ++    +G   GSGRSIE +++   +
Sbjct: 352 KDDVIVIYEPSIDESICGIVAGRIKEKYYRPTIILTNSSKEGVLKGSGRSIETYNMHDAI 411

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                +  L   GGH MA GL+++         F  K  ++ +       V  ID  +  
Sbjct: 412 --VPFDHKLESFGGHPMACGLSIKVDILDEFRIFLNK--NSNLSKKDLEEVINIDTQIKL 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAI 544
           S +++   + LES  P+G  NP P+FA     +  I ++      M  +  Q+     AI
Sbjct: 468 SNLSLEFAESLESLSPFGKDNPRPIFANKGVDIADIAMIGKDKKTMRMKLFQNGNYYNAI 527

Query: 545 AFRVYGTPLG---EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F           +F  + +G ++ +  +  VN +RG++  Q++++D  
Sbjct: 528 KFNALDDYEYLSLKFDGKIKGNKIDIVYYPDVNEFRGNRTLQIKLIDIR 576


>gi|15644294|ref|NP_229346.1| single stranded DNA-specific exonuclease, putative [Thermotoga
           maritima MSB8]
 gi|4982113|gb|AAD36613.1|AE001800_23 single stranded DNA-specific exonuclease, putative [Thermotoga
           maritima MSB8]
          Length = 955

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 159/580 (27%), Positives = 271/580 (46%), Gaps = 26/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W     Q        I+Q   + +I +R+LVNR  +  +  + FL  +      DP +
Sbjct: 2   KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFVNESHQH-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D +KA   +++A   +E ++I GDYDVDG  S  ++  FL       ++YIP RI +G
Sbjct: 59  FNDMEKAVETLLEARSKNELVLIHGDYDVDGITSTVMLKEFLEENGWRVDVYIPHRIEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG  P  +  F       ++TVDCG T+ D++  A   G+ VIV DHH+V  +  PA A+
Sbjct: 119 YGIQPENISTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIVTDHHEVNGDLPPADAI 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP    +      L   GV + ++  +                   L+LVAL TV D+V
Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQALSEA-------TNYPHPERFLELVALGTVADMV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L+  NR +V KG+ +       GLK L+ER+ + + +T+ ++ Y I P +NA GR+G +
Sbjct: 232 TLLDENRYFVKKGIELLANTKRVGLKRLLERLGLRN-LTSHDISYKIAPRLNAAGRMGSA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N    LLI +D  + + +  +L  LN  RR  E A+ ++A   +  + +D+ +  VIVV 
Sbjct: 291 NDAFNLLIMNDPAKADSVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++AA+L  ++ +P   +S +E     GS RS  G+DI  + +  +   I 
Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH+ A G +++R       D+ +      +          +D  +    ++   I+
Sbjct: 407 EEIGGHSSAVGFSLKRDQLEPFRDYIRN-----ISLEEREEKVIVDAEVRMEDIDDRFIE 461

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553
            ++   P+G GNP PV  F +  ++ I         +    ++  + L+ + +       
Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLVEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPV 592
               +     R  V  +L      G+     L  LD  PV
Sbjct: 522 SLSTLPVTPTRGDVVVNLRP---MGNGVSYYLISLDVKPV 558


>gi|83721546|ref|YP_442415.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           thailandensis E264]
 gi|167619420|ref|ZP_02388051.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           thailandensis Bt4]
 gi|83655371|gb|ABC39434.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           thailandensis E264]
          Length = 564

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 177/582 (30%), Positives = 271/582 (46%), Gaps = 30/582 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
             +          A+  +H +  ++AR+   R + S    +     ++  L+P P  L  
Sbjct: 3   RIVTRPAVPAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAAALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV
Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R        A + R       +A   +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   L +DD      LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I 
Sbjct: 297 DMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKE+F RP+F  +  +       GSGRSI GF +   +     
Sbjct: 355 LFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  ++V  GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
              ++++L+ A  +G G P P+F+     + S  +V   HL++    +  +   AI F  
Sbjct: 475 TPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNH 531

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                          R  +   L  + W G+ R QL V  A+
Sbjct: 532 AE---------PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564


>gi|15605174|ref|NP_219960.1| ssDNA exonuclease [Chlamydia trachomatis D/UW-3/CX]
 gi|76789182|ref|YP_328268.1| hypothetical protein CTA_0488 [Chlamydia trachomatis A/HAR-13]
 gi|237802875|ref|YP_002888069.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804797|ref|YP_002888951.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311257|ref|ZP_05353827.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           6276]
 gi|255317559|ref|ZP_05358805.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           6276s]
 gi|3328879|gb|AAC68046.1| ssDNA Exonuclease [Chlamydia trachomatis D/UW-3/CX]
 gi|76167712|gb|AAX50720.1| RecJ [Chlamydia trachomatis A/HAR-13]
 gi|231273097|emb|CAX10010.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274109|emb|CAX10903.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296435973|gb|ADH18147.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           G/9768]
 gi|296436900|gb|ADH19070.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           G/11222]
 gi|296437834|gb|ADH19995.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           G/11074]
 gi|297140334|gb|ADH97092.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           G/9301]
 gi|297748578|gb|ADI51124.1| RecJ [Chlamydia trachomatis D-EC]
 gi|297749458|gb|ADI52136.1| RecJ [Chlamydia trachomatis D-LC]
          Length = 584

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 160/582 (27%), Positives = 268/582 (46%), Gaps = 13/582 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S  G +W      E   +   I ++  +   +A+VL++R   SI   +DFL P +  L  
Sbjct: 7   SSLGQKWDYPKHNEVFLK--KILKEFHLHPAIAQVLISRGFQSIQEIRDFLYPQLSSLHS 64

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
              +  D +KA  R++QA  N+E +MI+GD DVDG   V L++ FL    V  +      
Sbjct: 65  T-SLFLDMEKAVARLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           +   +G   SL+ + + +G  L+ITVDCG T+   +     QGIDVIV DHH    +   
Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVHAINKQGIDVIVTDHHMPTGKLPH 183

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249
             A++NP    +      L   GV F ++   Y  L +QD       DLL  LDLV+L T
Sbjct: 184 CVAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308
           + DV  L G NR  V  G+    +    GLK L     +    +++ NLG  I P +N+ 
Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ +S+ G +LL+S D + +  +  +L  +NQ R+ +E+ +L   E ++L     +   
Sbjct: 304 GRLADSSQGVKLLLSHDPKNIGTIVSELSAVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S IV+    WH  ++ +++ARL   + +P   I+ ++ G G GS R+I  F +  ++   
Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             E   +  GGH  AAGL ++          F     + +          +D  ++ S +
Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           N  LI  +E   P+G GN +PVF     +++  +++   H+++   +     L+  AF  
Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   L  +    + +   L +         +L + D  
Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578


>gi|116074897|ref|ZP_01472158.1| RecJ exonuclease [Synechococcus sp. RS9916]
 gi|116068119|gb|EAU73872.1| RecJ exonuclease [Synechococcus sp. RS9916]
          Length = 631

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 161/547 (29%), Positives = 263/547 (48%), Gaps = 22/547 (4%)

Query: 46  VLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
           VL+ R ++  D AK +L PS   L P          A  R++ A  + E + I GDYD D
Sbjct: 33  VLMRRGINDLDQAKQWLTPS--ALPPADQHFPGLQPAVTRLIAACQSGETLAICGDYDAD 90

Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           G  S AL++R L          IP R+ DGYG N  ++E+   +G +L++TVD G  +  
Sbjct: 91  GMTSTALLIRALQPLGARPVAAIPSRMDDGYGLNVRMVEELHQQGVRLLVTVDNGVAAEA 150

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
           AL  A +  + VI+ DHH +      A AL++P      S    L   G+ +++   +  
Sbjct: 151 ALARAKDLDVQVIITDHHTIPDPPPQALALLHPATTPVDSPYRGLAGVGLAYVLARSLAE 210

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
            L +         + S  DL  + T+ D+ PL G NRA++ +GL    R    GL+AL +
Sbjct: 211 ALEK------PEAISSARDLFCIGTIADMAPLTGANRAWLREGLDHLHRTRCAGLRALQQ 264

Query: 285 RVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
                   + A+++G+ I P INA GR+GE +L   LL  +D+     LA K D LN+ R
Sbjct: 265 LSGLEDRALRADDVGFQIAPRINAVGRLGEPSLVVDLLTENDTDTAVELARKCDGLNRQR 324

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           R +  A+  +A A V +    I  A  +++    WH G++G++AARL E++ RP+  ++ 
Sbjct: 325 RELCDAIEAEAVALVESNAKSI--APFLLLAQGHWHHGVIGIVAARLMERYQRPAALLAA 382

Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
           + +G    S R+ EGF + + +        L + GGH  A G TV+      L       
Sbjct: 383 DGEGMMRASVRAPEGFAVDQALQAC--ADHLDRFGGHPAAGGFTVKAERVAALHAQLNGI 440

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
           A + + + +   V K + +L    ++ +L   L +  P+G GNP P+F   N  +   R+
Sbjct: 441 AEHWMESRLKGRVVKPEALLRFEQIDRSLWTSLRTLEPFGIGNPAPLFWARNCDVLEQRM 500

Query: 524 VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
           +   HL++    Q +  L AIA+R            +   ++ +   L +N W+G +R Q
Sbjct: 501 LRGGHLKLRLR-QGATLLDAIAWRWREN-------ATIPDQIDLAFRLSMNRWQGEERLQ 552

Query: 584 LRVLDAS 590
           L ++   
Sbjct: 553 LEIVALR 559


>gi|291560708|emb|CBL39508.1| exonuclease RecJ [butyrate-producing bacterium SSC/2]
          Length = 575

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 151/585 (25%), Positives = 267/585 (45%), Gaps = 33/585 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +   N+   I +K  I  ++AR++ NR+V   +  + +L   +  +  DP ++
Sbjct: 3   QWYLYKKKADFNQ---IGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDI-SDPFLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +    + Q +   + I I  DYDVDG  S  ++ + +       +  IPDR+ DGY
Sbjct: 59  KGVKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLGGKIDFQIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N +++EK + +    I+T D G  + DA+ Y    G+ +I+ DHH V           
Sbjct: 119 GINENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGVRK 178

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA  ++NP +         LC AGV F  +   Y+ + +D        L  LL ++
Sbjct: 179 EVLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEEDES-----QLEELLSML 233

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATVCDVV L G NR +V +GL   +   N GLKAL+   + +   I +  LG+++GP 
Sbjct: 234 AIATVCDVVDLTGENRIFVKEGLRRIKDTQNIGLKALLNVHDLMDKQIQSYALGFIVGPC 293

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +     L + +D ++ +  A +L  LN  R+ M    +++A  +      +
Sbjct: 294 INASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE--YE 351

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
            +   V+V+     H  I G++A R+K++   P+F ++  ++G   GSGRSIEG+ +   
Sbjct: 352 AKGDKVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEGI-KGSGRSIEGYSM--F 408

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +  K GGH MAAG ++E+           +     +         +ID  + 
Sbjct: 409 EEMMKVKEVFTKFGGHPMAAGCSLEKEKLQEFRKKINENC--TLEKKDFAKKVQIDIDMP 466

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              + + LI  L    P+G  N  P+FA    K++ + V       +++  +S     + 
Sbjct: 467 VDYITMDLIHQLSVLEPFGKENKKPLFAHRKLKVERVNVFGKNKNVIKLALKSSQGTRID 526

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
            + F        +       K +  T +  +N ++G K  Q+ + 
Sbjct: 527 GMIFEDEDEFREKM---GTAKYITCTYYPVINEYQGYKSLQINIQ 568


>gi|170288998|ref|YP_001739236.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga sp. RQ2]
 gi|170176501|gb|ACB09553.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga sp. RQ2]
          Length = 955

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 159/580 (27%), Positives = 271/580 (46%), Gaps = 26/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W     Q        I+Q   + +I +R+LVNR  +  +  + FL  +      DP +
Sbjct: 2   KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFVNESHQH-DPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D +KA   +++A   +E ++I GDYDVDG  S  ++  FL       ++YIP RI +G
Sbjct: 59  FNDMEKAVETLLEARSKNELVLIHGDYDVDGITSTVMLKEFLEENGWRVDVYIPHRIEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG  P  +  F       ++TVDCG T+ D++  A   G+ VIV DHH+V  +  PA A+
Sbjct: 119 YGIQPENISTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIVTDHHEVNGDLPPADAI 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP    +      L   GV + ++  +                   L+LVAL TV D+V
Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQALSEA-------TNYPHPERFLELVALGTVADMV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L+  NR +V KG+ +       GLK L+ER+ + + +T+ ++ Y I P +NA GR+G +
Sbjct: 232 TLLDENRYFVKKGIELLANTKRVGLKRLLERLGLRN-LTSHDISYKIAPRLNAAGRMGSA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N    LLI +D  + + +  +L  LN  RR  E A+ ++A   +  + +D+ +  VIVV 
Sbjct: 291 NDAFNLLIMNDPAKADGVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++AA+L  ++ +P   +S +E     GS RS  G+DI  + +  +   I 
Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH+ A G +++R       D+ +      +          +D  +    ++   I+
Sbjct: 407 EEIGGHSSAVGFSLKRDQLEPFRDYIRN-----ISLEEREEKVIVDAEVRMEDIDDRFIE 461

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553
            ++   P+G GNP PV  F +  ++ I         +    ++  + L+ + +       
Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLVEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPV 592
               +     R  V  +L      G+     L  LD  PV
Sbjct: 522 SLSTLPVTPTRGDVVVNLRP---MGNGVSYYLISLDVKPV 558


>gi|225076841|ref|ZP_03720040.1| hypothetical protein NEIFLAOT_01892 [Neisseria flavescens
           NRL30031/H210]
 gi|224951827|gb|EEG33036.1| hypothetical protein NEIFLAOT_01892 [Neisseria flavescens
           NRL30031/H210]
          Length = 566

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 167/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGMKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|166154661|ref|YP_001654779.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           434/Bu]
 gi|166155536|ref|YP_001653791.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335929|ref|ZP_07224173.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           L2tet1]
 gi|165930649|emb|CAP04146.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           434/Bu]
 gi|165931524|emb|CAP07100.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 584

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 269/582 (46%), Gaps = 13/582 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S  G +W      E   +   I ++  +   +A+VL++R   SI   +DFL P +  L  
Sbjct: 7   SSLGQKWDYPKHNEVFLK--KILKEFHLHPAIAQVLISRGFQSIQEIRDFLYPQLSSLHS 64

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
              +  D +KA  R++QA  N+E +MI+GD DVDG   V L++ FL    V  +      
Sbjct: 65  T-SLFLDMEKAVARLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           +   +G   SL+ + + +G  L+ITVDCG T+   +Q    QGIDVIV DHH    +   
Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVQAINKQGIDVIVTDHHMPTGKLPH 183

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249
             A++NP    +      L   GV F ++   Y  L +QD       DLL  LDLV+L T
Sbjct: 184 CIAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308
           + DV  L G NR  V  G+    +    GLK L     +    +++ NLG  I P +N+ 
Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ +S+ G +LL+S D + +  +  +L  +NQ R+ +E+ +L   E ++L     +   
Sbjct: 304 GRLADSSQGVKLLLSQDPKNIGTIVSELSAVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S IV+    WH  ++ +++ARL   + +P   I+ ++ G G GS R+I  F +  ++   
Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             E   +  GGH  AAGL ++          F     + +          +D  ++ S +
Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           N  LI  +E   P+G GN +PVF     +++  +++   H+++   +     L+  AF  
Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   L  +    + +   L +         +L + D  
Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578


>gi|225849696|ref|YP_002729930.1| single-stranded-DNA-specific exonuclease RecJ [Persephonella marina
           EX-H1]
 gi|225645848|gb|ACO04034.1| single-stranded-DNA-specific exonuclease RecJ [Persephonella marina
           EX-H1]
          Length = 566

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 163/589 (27%), Positives = 302/589 (51%), Gaps = 32/589 (5%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66
           ++  ++G++WV L  +        + +K     ++ ++L NR    + ++ ++ + P+++
Sbjct: 1   MDSGLTGYKWVVLEEKNKAP--EDLLKKFG--KVIGQLLYNRKEIFNNNFEEENIYPTLK 56

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+ DP +    D+ +  + + I + ++I+I+GDYD DG  S AL++ F    + +   Y
Sbjct: 57  KLL-DPQLFNKLDRISYELAKIIKDKKRIVIYGDYDADGITSTALLVNFFKDINADVRYY 115

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP R  +GYG N S ++K I++ A ++I VD G+ +Y+ L YA   G+ V V+DHH+ K 
Sbjct: 116 IPSRFYEGYGLNRSAIKK-ISQMADVLIVVDSGTNAYEELLYAKKLGLKVFVLDHHEAKE 174

Query: 187 EEIP--AYALVNPNRLDDLSG-QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           E I      ++NP   DD+     HL + G+ F V++++ R+L  +        L   LD
Sbjct: 175 EIIDDEQIYILNPKLHDDIDVLFKHLASVGITFYVIIMLRRLLNLE------VKLKPYLD 228

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           +VAL TV DVVPL  +NR  V KG+    ++   G+KAL++ ++I   +T+ ++G+++ P
Sbjct: 229 IVALGTVADVVPLSLINRILVQKGIEEINKRRRTGIKALLDYLSIDK-VTSFDVGFVLAP 287

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+ ++    +LL + +  +   L+++L+VLN+ R+ +     ++++ K+  +  
Sbjct: 288 RLNAAGRLDDAKKAVKLLTTKNENKGRQLSIELEVLNKKRQKLTELAFKESQVKLKKE-- 345

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
             ++   IVV  + WHPGIVG++A RL  ++  P+  +S  ++G  IGS RS    +I K
Sbjct: 346 --KEIKSIVVADENWHPGIVGIVAGRLAHQYKVPAVVLS-VKNGTAIGSVRSTGNINIYK 402

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           ++       +  + GGH +AAGLT+   N  R  +    +  + +         ++D  +
Sbjct: 403 VMEE--NADLFDRFGGHTLAAGLTMPSKNIERFKEILIDYVSS-LKEEDKISFIEVDMEV 459

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETL 541
             S      +  L+   P+G GNP P F   N ++     V     HL+  F+  D +  
Sbjct: 460 PLSHWTPENVKKLKILEPFGEGNPYPKFIARNLRIDDFITVGAGNQHLKFWFKDNDGKAY 519

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            A+ +   G     F   S G  + +     ++ W G    +  V D  
Sbjct: 520 PALWWGSVGF----FKKLSVGMNVDIIYTPKLSTWNGDLGVEFIVEDIK 564


>gi|309388959|gb|ADO76839.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium
           praevalens DSM 2228]
          Length = 743

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 176/557 (31%), Positives = 276/557 (49%), Gaps = 30/557 (5%)

Query: 41  DIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           +I+ ++L  R +    AK  +L P +  L  DP ++ + DKA  RI +A+ N ++I+I+G
Sbjct: 22  EILNKLLDQRGICSPEAKKRYLKPKLSYL-SDPFLMPEMDKAVNRIKKAVKNKQQILIYG 80

Query: 100 DYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           DYDVDG  S AL+ RF     ++    +IPDRI DGYG + S ++K +     LIITVDC
Sbjct: 81  DYDVDGITSTALLSRFFKKAFNLEVKTFIPDRIKDGYGLSLSALKKNLEF--DLIITVDC 138

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN-RLDDLSGQGHLCAAGVVFL 217
           G T+    ++  +QGID+I+ DHH        A A++N +    D      +   G  + 
Sbjct: 139 GITAIKEAEFLKDQGIDLIITDHHTPSDLLPEAKAIINHHLVKIDNYFAAEIAGVGTAYK 198

Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277
           +   +         + +  +    L LVAL TV D+ PL   NR +V KGL +       
Sbjct: 199 LAQALS-------PISIAENKAEFLPLVALGTVADIAPLKNENRIFVKKGLQLLVENEIL 251

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           GLK LIE + +    I+A  +GY+I P +NA GRI    L   LLIS++ +E   +A KL
Sbjct: 252 GLKILIEELKLDLKNISAGQIGYIIAPPLNAAGRIDNPKLALNLLISENKEESIQIAKKL 311

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
              N+ R+  E  + + AE+K+  +  ++++   I++    WH GI+G++A+RL EK+  
Sbjct: 312 IKTNKKRQKQEEKIYKNAESKI--KNLNLEKEKSIILADSSWHSGIIGIVASRLLEKYNL 369

Query: 397 PSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455
           P    + +   K   GS RSI   +I + +     +  ++  GGH  AAGL +E  NF +
Sbjct: 370 PVILFAIDSQTKTAKGSARSIANLNIYQALKSC--QSKIIDFGGHKAAAGLNLELDNFEK 427

Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
               FQ +  N +         KID  L+   +    I  L+   P+G  NP P F F N
Sbjct: 428 FKSLFQDYLKNNLSEEDYVKKIKIDLDLSLELITKEFILKLQKFKPFGVSNPAPKFIFKN 487

Query: 516 HKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
            K +    +     HL++  E+     +QA+AF      LG+           +     +
Sbjct: 488 LKAKKCYQMGKDNKHLKIYLENG----VQAVAFN-----LGKQAAAIASSNFDLVAQPEI 538

Query: 574 NYWRGSKRCQLRVLDAS 590
           NYW+G +  QL+V D  
Sbjct: 539 NYWQGKENLQLKVKDYR 555


>gi|227499576|ref|ZP_03929683.1| single-strand DNA-specific exonuclease [Anaerococcus tetradius ATCC
           35098]
 gi|227218335|gb|EEI83589.1| single-strand DNA-specific exonuclease [Anaerococcus tetradius ATCC
           35098]
          Length = 576

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 173/589 (29%), Positives = 278/589 (47%), Gaps = 30/589 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
            W     +E     L   +   I  + A VL NR++        ++ PS+  L  DPL+L
Sbjct: 3   NWYIYNKKENYINNL---KNKDITKLQALVLANRDIVDPKVVDMYIKPSLDKLH-DPLLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  K+   I++ I N+ +I IFGDYD DG ASV  ++  L     N +  IP R+ DGY
Sbjct: 59  PDMQKSVDLIIETIQNNGEIRIFGDYDQDGIASVMTLLDGLLFYYDNISYDIPHRVEDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G +  + EK I++   L+IT D G T ++ ++      I VIV DHHQ++ E+       
Sbjct: 119 GISNGMSEKAISDKVSLVITCDNGITGFEQIKKLKENNIKVIVTDHHQIEKEDNEGWVNQ 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A  ++NP+RLD       LC AGV F ++  +Y+ L  D     +  L SLL+ VA
Sbjct: 179 ILPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQALYQRLEGD-----SEYLNSLLEYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
           + TVCD+V L   NR +V++GL          +KAL+E       +T   LG++IGP +N
Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRINCTKKYAIKALLEEAGWDKEVTEYTLGFIIGPLMN 293

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+  + L   LL+ +D  ++  LA +L  LN  R+ +    L + +  V     D  
Sbjct: 294 ATGRLATAKLAIDLLMQEDIDKIHELAKELVDLNNTRKSLTEDGLNKCDKIVKENSYDKD 353

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMV 425
           Q  V+V+        I G++A R+KEK+ RP+   +    +    GS RSIE +D+    
Sbjct: 354 Q--VLVIYEPSIDESICGIVAGRIKEKYYRPTIVFTDSSTENILKGSARSIETYDMH--E 409

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           S       L   GGH MA GL++E+        F    A+  +       +  ID  +  
Sbjct: 410 SIVPFADKLQSFGGHPMACGLSIEKDLLDDFRKFLNDNAN--LSNKDLEEIINIDAQIKI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAI 544
           S +++   + +E   P+G  NP PVFA     +  I ++      M     Q+     AI
Sbjct: 468 SNLSLEFAESIEKLRPFGKDNPRPVFANKGVDIADIAMIGKDKKTMRLSLFQNGRYFNAI 527

Query: 545 AFRVYGTPLG---EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F           +F  + +  ++ +  +  +N ++G++  Q++++D  
Sbjct: 528 KFNALDDYEYLSLKFNGKIKANKIDIVYYPDINEYKGNRSLQIKLIDIR 576


>gi|295105336|emb|CBL02880.1| exonuclease RecJ [Faecalibacterium prausnitzii SL3/3]
          Length = 710

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 189/575 (32%), Positives = 290/575 (50%), Gaps = 27/575 (4%)

Query: 23  GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKA 81
             E     LA  QK     ++A +L  R ++    A   L       + DP +LTD D A
Sbjct: 42  SDEKYKAVLAAQQKEN--ALLAGILAARGITDPAEALTLLAG--EEELSDPALLTDMDAA 97

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
            +RI QAI N E I +FGDYDVDG  + AL+ + L          +P R  DGYG + + 
Sbjct: 98  CQRIWQAIDNGETIAVFGDYDVDGVTATALLYQHLKGMGATVKCMLPSREGDGYGLSKNA 157

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           ++   N+G  LI+TVD G ++ +   +A + G+D+I+ DHH        A A+V+P R D
Sbjct: 158 IQSMHNKGCTLIVTVDNGISAVEEADFAASLGMDLIITDHHLPPETLPKAVAVVDPRRED 217

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
           D S    LC AGV F +   +       +  P    L    DL A+ TV DV+PL+G NR
Sbjct: 218 DHSPFKGLCGAGVAFKLCAAL-------DGCPPEEMLDYCGDLAAVGTVADVMPLVGENR 270

Query: 262 AYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V  GL   ++   PG  AL+E V     PITAEN+ Y I P INA GR+  +    +L
Sbjct: 271 TLVKAGLRQLQQTDRPGFGALLEEVGLAGKPITAENISYAIAPRINAAGRMDNAVTALQL 330

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           ++ +D    E LA KL+ +N +R+  E  + + AE  +  Q + +    ++++ G  WHP
Sbjct: 331 VLCEDPDRAEELAHKLNEINAHRQETEQQIFKAAEELLEQQPERLDDR-IMLLWGRDWHP 389

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++G++A+RL E+ GRP   ++ +E G+G GSGRS++GF++   +       +LV+ GGH
Sbjct: 390 GVIGIVASRLVERTGRPVIVVTIDEHGEGKGSGRSVQGFNLHACIGSC--ADLLVRYGGH 447

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           AMAAGL+V   N  +L     ++A    P L  TP    D  ++   + +  +  L+   
Sbjct: 448 AMAAGLSVREENLPQLRRRLNEWAARECPVLH-TPPLTCDVAIHLDRITVECVRHLDQLA 506

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           PYGA NP PVF   +  +  +  V+   H ++     +S    A+ F +    L   L  
Sbjct: 507 PYGAENPTPVFLLQSAVVDGVYPVSEGRHSRLRLRQGNSCLY-AVWFGMPAEQLPYAL-- 563

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQL--RVLDASPV 592
             G  +    +L V  +  ++  QL  R++D  P 
Sbjct: 564 --GDVVDAALNLSV--YESARGAQLSGRIIDLHPA 594


>gi|282882084|ref|ZP_06290725.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus
           lacrimalis 315-B]
 gi|281298114|gb|EFA90569.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus
           lacrimalis 315-B]
          Length = 598

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 164/601 (27%), Positives = 275/601 (45%), Gaps = 42/601 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     ++         +K+ +  I+ R+L+NR + S +  + FL P +  +   P+ L
Sbjct: 3   KWFIKNSKDYELSY----EKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIH-SPIFL 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  K+A  I+  I     I I GDYDVDG  S  ++   L       +  IP+R++DGY
Sbjct: 58  KDMVKSANIIISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIGAKVSYDIPNRVLDGY 117

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV---------KS 186
           G N  ++++   +   LIIT D G  +++ ++YA N GIDVIV DHH+          + 
Sbjct: 118 GINNKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQE 177

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A  L++P   D       +C A V F ++  +Y I  ++            L  VA
Sbjct: 178 KLPDANGLIDPKVSDSKYPFKDICGACVAFKLISYLYLIKGKEE----QEVYDDFLAYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSI 305
           LATVCDV+PL   NR  +  GL   +   + GL ALI   +I    I   ++G++IGP++
Sbjct: 234 LATVCDVMPLKDENRILIHYGLEALKNVQDVGLNALISACDIKKEDIDVYHIGFIIGPTL 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL+  D       A ++  +N  R+   +    +A   +  Q   +
Sbjct: 294 NACGRLKTAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQEL-L 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  ++++     +  IVG++A R+KEKF RP+  ++ + +G   GSGRSI+ +++    
Sbjct: 353 KKYPILLIYVPNINESIVGIIAGRIKEKFYRPTIVLT-DSNGIIKGSGRSIDEYNM--FE 409

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
              V    L   GGH MA GL++++ NF        K A   +     T    ID  LN 
Sbjct: 410 EVNVFRDELEAFGGHKMACGLSIKKENFNNFNLNLNKNAK--LTRDDLTKKIYIDYPLNF 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQA 543
           S +N+ LI  L    P+G  N  P+F   N K+  I +       +++  E        A
Sbjct: 468 SQINMKLIQDLNKLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLED-SGVFQNA 526

Query: 544 IAFRVYGTPLGE-------------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + F+     L +                 ++  ++ V   + VN +RG+   +LR+    
Sbjct: 527 LLFKDSNEFLNDLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGNSSIELRLKSYR 586

Query: 591 P 591
            
Sbjct: 587 V 587


>gi|167586753|ref|ZP_02379141.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           ubonensis Bu]
          Length = 565

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 181/580 (31%), Positives = 268/580 (46%), Gaps = 28/580 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+   R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYAARGV---QSPSDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAALLADAIAGKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        H+   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R        A + R       TA   +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LD +N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDVGRAWELAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +      
Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGVRVKGSGRSIPGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  +LV  GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLLVAFGGHAMAAGVTLDTANVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNRT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                  L         +   L  + W G  R QL V  A
Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHA 563


>gi|255507035|ref|ZP_05382674.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           D(s)2923]
 gi|289525492|emb|CBJ14969.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           Sweden2]
 gi|296435045|gb|ADH17223.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           E/150]
 gi|296438765|gb|ADH20918.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           E/11023]
          Length = 584

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 162/582 (27%), Positives = 272/582 (46%), Gaps = 13/582 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S  G +W      E   +   I+++  +   +A+VL++R   SI   +DFL+P +  L  
Sbjct: 7   SSLGQKWDYPKHNEVFLK--KISKEFHLHPAIAQVLISRGFQSIQEIRDFLHPQLSSLHS 64

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
              +  D +KA  R++QA  N+E +MI+GD DVDG   V L++ FL    V  +      
Sbjct: 65  T-SLFLDMEKAVVRLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           +   +G   SL+ + + +G  L+ITVDCG T+   +Q    QGIDVIV DHH    +   
Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVQAINKQGIDVIVTDHHMPTGKLPH 183

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249
             A++NP    +      L   GV F ++   Y  L +QD       DLL  LDLV+L T
Sbjct: 184 CIAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308
           + DV  L G NR  V  G+    +    GLK L     +    +++ NLG  I P +N+ 
Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ +S+ G +LL+S D + +  +  +L V+NQ R+ +E+ +L   E ++L     +   
Sbjct: 304 GRLADSSQGVKLLLSQDPKNIGTIVSELSVVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S IV+    WH  ++ +++ARL   + +P   I+ ++ G G GS R+I  F +  ++   
Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             E   +  GGH  AAGL ++          F     + +          +D  ++ S +
Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           N  LI  +E   P+G GN +PVF     +++  +++   H+++   +     L+  AF  
Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   L  +    + +   L +         +L + D  
Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578


>gi|120612346|ref|YP_972024.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax citrulli
           AAC00-1]
 gi|120590810|gb|ABM34250.1| exonuclease RecJ [Acidovorax citrulli AAC00-1]
          Length = 571

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 176/578 (30%), Positives = 267/578 (46%), Gaps = 30/578 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
             RA+   ++  +  ++AR+   R V+   A D L+ ++  L+P P  L    +AA  + 
Sbjct: 9   PPRAVWALEQAGVHPLLARLYAARGVT---AHDELDDALARLLPPP-GLRGTREAAALLA 64

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145
            AI    +I++  DYD DGA + A+ +R L        +  +PDRI DGYG +P++  + 
Sbjct: 65  DAIAQDRRIVVVADYDCDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRV 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
              GA L++TVD G  S + +  A   G+ V+V DHH    E   A A+VNPN+      
Sbjct: 125 RERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDHHLPGPELPQADAIVNPNQPGCSFE 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
              +   GV+F VL+ +   LR+           L  LL LVAL TV DVV L   NR  
Sbjct: 185 SKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDANNRRL 244

Query: 264 VVKGLMVARRQGNPGLK-ALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R    P    AL +     + + T  + G+ +GP INA GR+ +  LG   L
Sbjct: 245 VAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLGIECL 304

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380
           ++DD      LA  LD +N+ RR +E  M EQA     +   +  +  + + V    +H 
Sbjct: 305 LTDDPGRAAELARTLDAINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHE 364

Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434
           G+VG++A+R+K++  RP+F      +  ++ +  GSGRSI GF +   +        G++
Sbjct: 365 GVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGSGRSIPGFHLRDALDLVAKRHPGVI 424

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGHAMAAG TV +  F      F + A   + A         DG L+       L+D
Sbjct: 425 LKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRAELVD 484

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGTP 552
            L     +G G   P F     ++ S R+V     HL +    Q    +  I F      
Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVEIISQRLVGEGKNHLSLKLLHQ-GRPVDGIWFGHTE-- 539

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      R+ +   L VN W+G +R Q  V  A 
Sbjct: 540 -------PLPARVLLAFRLDVNEWKGERRVQFLVEGAQ 570


>gi|228982451|ref|ZP_04142710.1| Single-stranded-DNA-specific exonuclease recj [Bacillus
           thuringiensis Bt407]
 gi|228776634|gb|EEM24942.1| Single-stranded-DNA-specific exonuclease recj [Bacillus
           thuringiensis Bt407]
          Length = 573

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 150/582 (25%), Positives = 258/582 (44%), Gaps = 30/582 (5%)

Query: 17  RWVSLLGQEGIN---RALAITQKHA-IPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
           +W+            + L   ++   + D V  +L NR     +  + FL+  I   M +
Sbjct: 8   KWIRPENTVERRGKLQDLRNAKELNHLADCVLEILYNRGFDTIEKIESFLHMDITD-MHN 66

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P ++ D DKA   +  AI N+  I+++GDYD DG ++ ++ +  L +     + ++ +R 
Sbjct: 67  PQLMKDSDKAVSLLSHAIKNNLHIVVYGDYDCDGVSATSVAVLALRNLGAKVSYFVNNRF 126

Query: 132 VDGYGPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-E 188
             GYG N   +E          +++TVD G  +Y+ ++ A   G+ VIV DHH       
Sbjct: 127 KHGYGMNVLGLEDMMKKYPDVDVVLTVDNGIVAYEGIKKAKELGLTVIVTDHHDPGDHLP 186

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             A A+VNP R D       LC A V++ V++ +Y  L +D        +  ++D+V +A
Sbjct: 187 EEADAVVNPKRHDCEYPFKGLCGASVIYKVMLQLYWELDKD-----LDYVQDMIDIVGIA 241

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
           TV D++PLI  NR +V + +   +R      K L E+  +   IT E  G+   P INA 
Sbjct: 242 TVGDIMPLIDENRVFVTESIRQVKRAQRHVFKVLQEKTGVKE-ITEETYGFKYVPMINAL 300

Query: 309 GRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GRI G+ +    + +S D +++  +  K+   N+ R+ +       A   V  +      
Sbjct: 301 GRITGDVDEAIEMFVSQDEEKIPEIVEKVIETNEYRKQITEEQEALAIQMVEEKGIK--- 357

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             VIV+    +H GIVGL+A RLKE++ RP   ++ E  G   GS RSI  F I K   F
Sbjct: 358 -PVIVIYHPSFHEGIVGLIAGRLKERYFRPVIVLA-EGHGFIKGSARSIPNFHIKKA--F 413

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              +  L+  GGH MA GL+++  +     +     A + +      P   +D V+    
Sbjct: 414 DETKEYLIGYGGHPMAGGLSLKEEHLEAFEEKICSLAESQLTEADFIPRIMVDTVVEPKD 473

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           V + L++ L+   P+G     P F     K+  +  +      +  +    + L+ I F 
Sbjct: 474 VTVDLVEELDVLKPFGEAFSKPNFGLKGFKVDKVYYMGENKNHLKLKE---KKLEIIMFN 530

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                   +      + +   G+  +N W  +   Q  +   
Sbjct: 531 RADI----YQEMQEPRNIKALGYPSLNIWNNNVSVQFNIEGI 568


>gi|83590517|ref|YP_430526.1| single-stranded-DNA-specific exonuclease RecJ [Moorella
           thermoacetica ATCC 39073]
 gi|83573431|gb|ABC19983.1| exonuclease RecJ [Moorella thermoacetica ATCC 39073]
          Length = 911

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 185/575 (32%), Positives = 283/575 (49%), Gaps = 21/575 (3%)

Query: 23  GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLILTDCDKA 81
               +   LA+ ++  I  I A++L+NR ++   A   F  P    L+P P  +     A
Sbjct: 2   PPVNLPERLALARELHISPITAQILINRGITTAAAARAFFQPDPANLIP-PEKIPGLPAA 60

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
             R+VQAI   EKIM+ GDYDVDG A+ A+M+  L+   V A +Y+PDR+ +GYG     
Sbjct: 61  RERLVQAIEKREKIMVHGDYDVDGLAATAIMLETLARLGVEAEVYLPDRLTEGYGLKKKS 120

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           + K +    QL+ITVDCG TS +   +A  QG+D+I+ DHH+  +    A A+VNP    
Sbjct: 121 LIKALELNCQLVITVDCGITSLEEAIFAREQGLDLIITDHHRPGTSLPQASAVVNPLL-- 178

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
              G   LC AGV F +   +        +  +       LDLVALAT+ D VPL+G NR
Sbjct: 179 -APGLPPLCGAGVAFKLAQSLATHFGLAPQGGVAAGWA--LDLVALATIADAVPLLGENR 235

Query: 262 AYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
             V  GL        PGLKAL E     +   TA  + + + P +NA GR+G +     +
Sbjct: 236 LLVQLGLKALSGSMRPGLKALAEVAGLPAREWTAREVAFGLVPRLNACGRLGNAMPALEI 295

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L++   Q    LA +L   NQ RR +E ++  +AEA  +T      +  V  +  + WHP
Sbjct: 296 LLTSSPQRALELAQRLQEENQARRHLEESIAAEAEAMAVTALAAGAKGLV--LAAEGWHP 353

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G+ G++AARL EK+  P   I+   D +G GSGRS+ G ++ ++ +       L+  GGH
Sbjct: 354 GVTGIIAARLVEKYNCPVVLIAVVGD-RGRGSGRSLPGINLHEIFARC--RSYLLSFGGH 410

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           A A GL +           F +   +++  + T P    +  +  S ++  L++ LE   
Sbjct: 411 ARAGGLEIAAKEIPAFQAAFNEIVKSLMAEVQTPPEVAPEAEVLVSQLDWQLLEELEQLA 470

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G GNP PV       +++ R V    AHL++T    +   + AI F +   P      
Sbjct: 471 PFGEGNPRPVLVTRRALIKAARQVGRDGAHLKLT-AGGEGREIGAIGFNLSLPP-----G 524

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            S G  + +  +L  N +R  +  QLR++     E
Sbjct: 525 LSPGHHVDLAFYLERNTYRDREELQLRLVALKAAE 559


>gi|78047468|ref|YP_363643.1| putative single-stranded-DNA-specific exonuclease [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78035898|emb|CAJ23589.1| putative single-stranded-DNA-specific exonuclease [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 579

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L +   AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEMLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + +  +LR+          DL  LLDLVA+ TV D+VPL   NRA V  GL   R     
Sbjct: 200 LALRSVLRKRGAFAGRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F      +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFLAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKDRHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    PV 
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPVT 576


>gi|157363235|ref|YP_001470002.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga lettingae
           TMO]
 gi|157313839|gb|ABV32938.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga lettingae
           TMO]
          Length = 979

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 275/560 (49%), Gaps = 25/560 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW+    Q    +   ++Q+  I   +A++LVNR +     A  FL PSI  L  DP +L
Sbjct: 2   RWIIK--QVDQQKVEFLSQEAGISLFLAKILVNRGIEDPKIANRFLKPSILDLH-DPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+    +++A   +  ++I+GDYD DG   +A+   FL       + YIP R+ +GY
Sbjct: 59  RDMDRVVELLLKAREENIPVLIYGDYDADGITGIAVYKEFLDRYGWVTDYYIPKRMDEGY 118

Query: 136 GPNPSLMEK-FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G  P+++E+ F      +++TVDCG T+ +A+++A      V++ DHH+V  +   A A+
Sbjct: 119 GIQPAVIEQFFKKFNKGIVLTVDCGITAIEAVEFAKKFNCLVLITDHHEVGEQLPDAAAV 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P R DD      L   GV F V+  I + L          ++  LL+ VA+ T+ D+V
Sbjct: 179 VDPKRPDDDYPFKDLAGVGVAFKVVSAISQKLNIQ-----IEEIFDLLEFVAIGTIADMV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L+  NR  V  GL   +R G PGL  L +R+ I+    + ++GY + P +NA GR+  +
Sbjct: 234 KLVDENRFMVKTGLEKLKRTGKPGLSILFKRLGINE-PDSRDIGYRVAPKLNAAGRLDSA 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    LLIS D    E L   L   N  R+ +ES +  +A  ++  +   + +  +IVV+
Sbjct: 293 DDAFELLISRDETSAEKLVNLLFEYNSTRQEIESEIFMRAVEQI--EERGLHKDPIIVVK 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           GD WH G++G++A RL  ++G+P   IS  + G   GS RSI   ++ +++         
Sbjct: 351 GDNWHVGVIGIVATRLVHRYGKPVMVISNSD-GIARGSARSIPNLNLIELLQ--PLSSYF 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH +A G +++  N     +  + F    +P      V +ID  L    +N   + 
Sbjct: 408 YEFGGHPLAVGFSLDSNNVDDFAELLRNF---EIPIEDVPDVLEIDEDLQLEQINEETLK 464

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G GN  P+F   N   +SI+     H  ++M F + +   ++AI F +    
Sbjct: 465 DIGKLEPFGHGNNEPIFVARNVIAESIKFFGQNHANVKMNF-TVNGAKIEAIGFGLDHAF 523

Query: 553 LGEFLMQSRGKRMHVTGHLC 572
                  +   ++ +   + 
Sbjct: 524 DKSIYECN---KVDIVFSIR 540


>gi|254444757|ref|ZP_05058233.1| single-stranded-DNA-specific exonuclease RecJ [Verrucomicrobiae
           bacterium DG1235]
 gi|198259065|gb|EDY83373.1| single-stranded-DNA-specific exonuclease RecJ [Verrucomicrobiae
           bacterium DG1235]
          Length = 571

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 163/581 (28%), Positives = 272/581 (46%), Gaps = 23/581 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W        ++      +   +   VA +L   +    + A  FLNP +  +   P  ++
Sbjct: 4   WNYSPPSTDLSN--QYLKALKVGPTVAELLARLDFADTEEASRFLNPRLGEI-DCPFGIS 60

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + + AARRI QAI N ++I+I GDYDVDG  S AL++  L          +P R+ +GYG
Sbjct: 61  NLESAARRISQAIENRQRIVICGDYDVDGVTSTALLVAILQKFETYPAYIVPLRLEEGYG 120

Query: 137 PNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
            +   +E+         L I +DCG+ S D +Q+  + G DV+V+DHHQ K        L
Sbjct: 121 LSQKAVERALDKANQPDLFIALDCGTNSIDEVQHILDAGCDVVVVDHHQSKEGLPEGAIL 180

Query: 195 VNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD-LLSLLDLVALATVCD 252
           VNP+  D D +     C  G+VF +   + +I R+ +        L + LDLV++ TV D
Sbjct: 181 VNPHVNDRDSANHCQFCTVGLVFKLAHGLLKIRREKDDPRAFEIKLRNFLDLVSMGTVAD 240

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310
           +VPL   NR +   GL V  R    GL+ L++   +     +   ++ + +GP INA GR
Sbjct: 241 MVPLNKENRTFARIGLQVLSRTERIGLQNLMKVSGVAAKHGVNPIDVSFRLGPRINASGR 300

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           + ++++   L++SDD       ++KLD  N+ R+ +E AM E A  ++    +   + + 
Sbjct: 301 LADASVAVELILSDDPSFCLETSLKLDSFNRERQEIERAMTENALEQI---KNSDTERNG 357

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV GD WHPG+VG++A+R+   F RP+  +   E     GSGRSI+G D+  +   A  
Sbjct: 358 LVVYGDDWHPGVVGIVASRVSRSFNRPAIVLG-REGDLAKGSGRSIDGIDL--VEVLAPF 414

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              L   GGH MA G++++        +FF K     + +       +I   L    ++ 
Sbjct: 415 SEKLESWGGHPMAVGVSMKVERVEEFTEFFDKAIGEYLASHQVERTLEIASWLRLEDIDT 474

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
            L+  L    P+G  NP P+ A         + V    H + T  ++    +  +A+++ 
Sbjct: 475 KLMKDLSMLEPFGQANPEPILAARRILFGTKLTVFKDLHFRFTLTTRRKHVISGVAWKMA 534

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   +      + +   L  N +   K  QL ++D  
Sbjct: 535 ER------IPPANTPVDIAFRLVWNTFGNKKALQLELVDWR 569


>gi|325132017|gb|EGC54715.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M6190]
          Length = 566

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|309379410|emb|CBX21977.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 566

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      + ++P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFFVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ +         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRDYFSDGIKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R  G            + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSGD---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|134296297|ref|YP_001120032.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           vietnamiensis G4]
 gi|134139454|gb|ABO55197.1| exonuclease RecJ [Burkholderia vietnamiensis G4]
          Length = 565

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 179/564 (31%), Positives = 269/564 (47%), Gaps = 27/564 (4%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +H +  ++AR+  +R V    +   +  ++  L+P P  L  C  AA  +  AI    ++
Sbjct: 19  RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTDLKGCADAAALLADAIAERRRL 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
           ++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E        L+IT
Sbjct: 75  LVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVELAAARKPDLLIT 134

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G  S   ++ A  +GIDV+V DHH        A A+VNPN+        H+   GV+
Sbjct: 135 VDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPGCAFPSKHIAGVGVM 194

Query: 216 FLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           F VL+ +   LR+            L  LLDLVAL TV DVV L G NR  V +GL   R
Sbjct: 195 FYVLLALRAELRRRGAFASKDAEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGLHRIR 254

Query: 273 R-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +  PG+ AL       +   +  +LG+ +GP +NA GR+ + +LG   LI+DD     
Sbjct: 255 NGRMQPGIAALFRAAGRDARTASGFDLGFGVGPRLNAAGRLSDMSLGIECLITDDIGRAW 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            LA +LD +N+ RR +E+ M +QA A +     D   A  I +    WH G++G++A RL
Sbjct: 315 ELAQQLDAMNRERREIEAGMQQQALADLAD--VDPADACTITLFNPAWHQGVIGIVAGRL 372

Query: 391 KEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446
           KEKF RPSF  +  ++      GSGRSI GF +   +      E  ++V  GGHAMAAGL
Sbjct: 373 KEKFHRPSFTFAHADESGTRVKGSGRSIAGFHLRDALDLVSKREPDLIVAFGGHAMAAGL 432

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           T++  N  R    F+  A   +       V + DG L  +      + +L+    +G G 
Sbjct: 433 TLDTANVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVGLLDE-AVWGQGF 491

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P P+F+     + S  +V   HL++   ++  +   AI F          L         
Sbjct: 492 PAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHTEPLPASAL--------- 540

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +   L  + W G  R QL V  A+
Sbjct: 541 IAYRLVADTWNGVTRVQLVVEHAA 564


>gi|167766766|ref|ZP_02438819.1| hypothetical protein CLOSS21_01274 [Clostridium sp. SS2/1]
 gi|167711520|gb|EDS22099.1| hypothetical protein CLOSS21_01274 [Clostridium sp. SS2/1]
          Length = 576

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 151/585 (25%), Positives = 266/585 (45%), Gaps = 33/585 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +   N+   I +K  I  ++AR++ NR+V   +  + +L   +  +  DP ++
Sbjct: 4   QWYLYKKKANFNQ---IGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDI-SDPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +    + Q +   + I I  DYDVDG  S  ++ + +       +  IPDR+ DGY
Sbjct: 60  KGVKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLGGKIDFQIPDRMKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N +++EK + +    I+T D G  + DA+ Y    G+ +I+ DHH V           
Sbjct: 120 GINENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRK 179

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA  ++NP +         LC AGV F  +   Y+ + +D        L  LL ++
Sbjct: 180 EVLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEEDES-----QLEELLSML 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATVCDVV L G NR +V +GL   +   N GLKAL+   + +   I +  LG+++GP 
Sbjct: 235 AIATVCDVVDLTGENRIFVKEGLRRIKDTQNIGLKALLNVHDLMDKQIQSYALGFIVGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +     L + +D ++ +  A +L  LN  R+ M    +++A  +      +
Sbjct: 295 INASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE--YE 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
            +   V+V+     H  I G++A R+K++   P+F ++  ++G   GSGRSIEG+ +   
Sbjct: 353 AKGDKVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEGI-KGSGRSIEGYSM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +  K GGH MAAG ++E+           +     +         +ID  + 
Sbjct: 410 EEMMKVKEVFTKFGGHPMAAGCSLEKEKLQEFRKKINENC--TLEKKDFAKKVQIDIDMP 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              + + LI  L    P+G  N  P+FA    K++ + V       +++  +S     + 
Sbjct: 468 VDYITMDLIHQLSVLEPFGKENKKPLFAHRKLKVERVNVFGKNKNVIKLALKSSQGTRID 527

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
            + F                K +  T +  +N ++G K  Q+ + 
Sbjct: 528 GMIF---EDEDEFREKMGTSKYITCTYYPVINEYQGYKSLQINIQ 569


>gi|261377442|ref|ZP_05982015.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria cinerea
           ATCC 14685]
 gi|269146163|gb|EEZ72581.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria cinerea
           ATCC 14685]
          Length = 566

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ +         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRHYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|254670459|emb|CBA06115.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis alpha153]
          Length = 566

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++A++  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIAQLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    +V   D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAK-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|15835347|ref|NP_297106.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydia muridarum
           Nigg]
 gi|270285518|ref|ZP_06194912.1| single-stranded-DNA-specific exonuclease [Chlamydia muridarum Nigg]
 gi|270289529|ref|ZP_06195831.1| single-stranded-DNA-specific exonuclease [Chlamydia muridarum
           Weiss]
 gi|301336915|ref|ZP_07225117.1| single-stranded-DNA-specific exonuclease [Chlamydia muridarum
           MopnTet14]
 gi|7190761|gb|AAF39542.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydia muridarum
           Nigg]
          Length = 582

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 162/586 (27%), Positives = 274/586 (46%), Gaps = 21/586 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S  G +W      E   +   I ++  +  ++A+VLV+R   S+   +DFL P    L P
Sbjct: 7   SALGQKWTYPKHNEEFLK--KIIKELYLHPVIAQVLVSRGFQSVQEIRDFLYPQFPSLHP 64

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
                 D +KA  R++++  N+E +MI+GD DVDG   V L++ FL    V  +      
Sbjct: 65  A-SSFLDMEKAVARLLKSKENNEHVMIYGDGDVDGITGVTLLVEFLQMLGVKTSYCCSGT 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           +   +G   SL+ + + +G  L+ITVDCG T+   ++    QGIDVIV DHH    +   
Sbjct: 124 LFKQHGEITSLISQMLQDGVSLLITVDCGITAGREVRSINKQGIDVIVTDHHTPTGKLPH 183

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249
             A +NP    +      L   GV F ++   Y  L +QD       DLL  LDLV+L T
Sbjct: 184 CIATLNPKLDKNSYPNKELTGVGVAFKLVCATYEELIKQDASWKDKIDLLHFLDLVSLGT 243

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308
           + DV  L G NR  V  G+    +    GLK L     +    I++ NLG  I P +N+ 
Sbjct: 244 IADVGRLSGENRILVSYGIKEITKGKRLGLKKLCSLSGVDKSDISSTNLGIRITPKLNSL 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ +S+ G +LL+S D + +  +  +L ++NQ R+ +E+ +L   E ++L     +   
Sbjct: 304 GRLADSSQGVKLLLSQDPRTVGTIVSELAIVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S IV+    WH  ++ +++ARL   + +P   I+ ++ G G GS R+I  F +  ++   
Sbjct: 363 SAIVLASPYWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGAFPLLGVLRKC 421

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             E   +  GGH  AAGL ++          F    ++ +     T    +D  ++ S +
Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEEQIEGFRKKFIHLVNSSLRKDEATLTLPLDVCMDFSQI 479

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           +  LI  +E   P+G GNP+PVF     +++  ++++  H+++   +     L+  AF  
Sbjct: 480 SQDLISSMELLEPFGKGNPSPVFYTRAIQVRYPKLLSGNHVKLYL-NSGERNLEGTAFGQ 538

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR----CQLRVLDAS 590
                   L  +    + +   L V      +      +L + D  
Sbjct: 539 GDKI--SLLKANWNMPLDIAYTLRVM----KRSVHGAVRLLIQDFR 578


>gi|254492425|ref|ZP_05105597.1| single-stranded-DNA-specific exonuclease RecJ [Methylophaga
           thiooxidans DMS010]
 gi|224462317|gb|EEF78594.1| single-stranded-DNA-specific exonuclease RecJ [Methylophaga
           thiooxydans DMS010]
          Length = 585

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 175/568 (30%), Positives = 274/568 (48%), Gaps = 24/568 (4%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           PD + R++  R +       F    +  L P P  +   D+A   +V+A+    K+ +  
Sbjct: 22  PDCIRRIMAARGIKQAEQLFF---ELANL-PRPQQMLGMDQAVAIMVEALQKQWKVTVVA 77

Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINE--GAQLIITV 156
           D+D DGA S AL +R L    +   N  +P+R + GYG  P L++   N      L++TV
Sbjct: 78  DFDSDGATSCALAIRGLRAMGLQHINFIVPNRFIHGYGLTPELLDDIPNTTEQPDLLLTV 137

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G  +   ++ A  +GI V+V DHH        A A+VNPN+  D     +L   GV F
Sbjct: 138 DNGIAAVAGVEAAQQRGIKVLVTDHHLAGEVLPTADAIVNPNQAGDAFPSKNLAGVGVCF 197

Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +L+ + + LR+ +           L   LD+VAL TV DVVPL  LNR  V  GL   R
Sbjct: 198 YLLLGLRQALREQDWFMQQNLDEPKLSDWLDIVALGTVADVVPLDKLNRTLVDIGLKRIR 257

Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             +   G++AL +        + + +L + I P +NA GR+ +  LG  LL++D+ Q+  
Sbjct: 258 SGRACAGIRALSQIAGRETDKLVSPDLAFSIAPRLNAAGRMEDMGLGINLLLTDEWQDAL 317

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAAR 389
            +A +LD +N  RR +E  M + A   +     +    A    +    WH G++GLLA+R
Sbjct: 318 SIAAQLDQINLERRGVEQQMQQDALTMLDKLSLETATVAPGYCLYDPEWHQGVIGLLASR 377

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLT 447
           +KEK  RP  A +   +G+  GS RSI G  I  +++   A    +L + GGHAMAAGLT
Sbjct: 378 IKEKMHRPVIAFAPGNEGEIKGSARSIAGIHIRDVLARIAAQNPTMLQRFGGHAMAAGLT 437

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  +       F+    + V A +       DG L+   + + L + L  A P+G G  
Sbjct: 438 LKLNDLDNFRVAFEAVLTDSVDAAVYQQQLATDGELSHHEITLQLAEQLPQAAPWGQGFE 497

Query: 508 NPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
            P F      ++S R+V     HL+++ +  DS  + A+AFR       E     RG ++
Sbjct: 498 EPRFHGL-FDVKSWRLVGQEADHLRLSLQLGDSREITAMAFRQQKPEWLE-----RGSKI 551

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            +   L VN +R +K  Q  + D  P +
Sbjct: 552 LIRYRLAVNEFRATKTIQFLIDDLLPPQ 579


>gi|254427998|ref|ZP_05041705.1| single-stranded-DNA-specific exonuclease RecJ [Alcanivorax sp.
           DG881]
 gi|196194167|gb|EDX89126.1| single-stranded-DNA-specific exonuclease RecJ [Alcanivorax sp.
           DG881]
          Length = 572

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 175/564 (31%), Positives = 266/564 (47%), Gaps = 21/564 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++AR+L  R V+       L+  ++ L P P        A   ++Q   +  +I I
Sbjct: 21  DVPPMLARILAGRGVTDPAL---LDLGLKRL-PHPEQFIGLRGAVALLLQGRTDHWRICI 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155
            GDYD DGA +  LM+R L        +  +PDR   GYG +P++++         LIIT
Sbjct: 77  VGDYDADGATATTLMVRGLERLGYPRPDFLVPDRFEYGYGLSPAIVDLAKELYDPDLIIT 136

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD-LSGQGHLCAAGV 214
           VD G  S D +  A  QG+ V++ DHH        A ALVNP           +L   GV
Sbjct: 137 VDNGIASVDGVAAARAQGMRVLITDHHLPGDTLPEADALVNPRLPGCEDFPATNLAGVGV 196

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            F +L+ + R LR+         +  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 AFYLLMDLQRALREQGVAASAP-ITDLLDLVALGTVADVVVLDDANRVLVEQGLRRIRAG 255

Query: 275 G-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL++        + A ++G+ +GP +NA GR+ +   G   L+++   E   +
Sbjct: 256 KGCPGIRALLQVAGRDPNRVLAADMGFAVGPRLNAAGRLTDMTQGIACLLAETDAEATEM 315

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A  LD +N+ RR +E  M + A  +V     D    + + + G  WH G+VG+LA+R+KE
Sbjct: 316 AQDLDTINRERRSIEHGMRDAAMEEVARLDAD-NLPAGLCLYGKEWHEGVVGILASRVKE 374

Query: 393 KFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
              RP  A +  ++ G+  GSGRSI G  +   +        G+L K GGHAMAAGL++E
Sbjct: 375 AIHRPVIAFAPAQQRGQLKGSGRSIPGLHLRDALDAVATANPGLLSKFGGHAMAAGLSLE 434

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     F+K    ++       + + DG L    +++   ++L    P+G G P P
Sbjct: 435 LEKLDAFKAAFEKAVGELLSPKALERIVETDGELEDHELSLTNAELLSHRFPWGQGFPAP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F     ++   R+V   HL++T      S  + AI F V    L   + + RG      
Sbjct: 495 SFDGE-FEVLKHRIVGERHLKLTLGLPGVSGVIDAIHFNVAVDALPSRINKVRG-----V 548

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L VN +RG +  QL      P+
Sbjct: 549 YRLEVNEFRGQRNPQLLFEHLIPL 572


>gi|282934714|ref|ZP_06339957.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii
           208-1]
 gi|297206113|ref|ZP_06923508.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii JV-V16]
 gi|281301289|gb|EFA93590.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii
           208-1]
 gi|297149239|gb|EFH29537.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii JV-V16]
          Length = 753

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 154/576 (26%), Positives = 271/576 (47%), Gaps = 36/576 (6%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W      E    +  + +K+ +  + A++   R ++ D   ++   S      DP ++  
Sbjct: 3   WKKR---EATELSSELIEKYQLSPLTAKLFSLREINTDEKLNYWLNSTEEDFADPYLMHG 59

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +   RI QAI N EKI I+GDYD DG  +  +M   L+    + + +IPDR  DGYGP
Sbjct: 60  MQETVDRINQAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +    ++ + +G +LIITVD G T  + ++YA + G DVIV DHH  + +   A A+V+ 
Sbjct: 120 SMKRYQQIVADGTKLIITVDNGVTGIEEVRYAQDNGCDVIVTDHHSFQEQMPEAKAIVHC 179

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N  +        C AGV + +   +               +  L++L  + T+ D+V + 
Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRALME-----------DTMPELIELAMIGTIGDMVKVS 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316
           G     V +GL +      PGL+ALI+   +    I   + G+ I P +NA GR+  + L
Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDTGFQIAPRLNATGRLASARL 288

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL+SDD +E + LA K++ LN  R+ +   + E A  ++     + Q   V  +   
Sbjct: 289 AVDLLLSDDLEEAQKLAKKVEELNNERKELTQKVYESALNQIKKFGYNSQNTLV--LYDS 346

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++GL+A ++ EK  +P+  ++  EDG   GSGRS  GF++ + +    ++ +   
Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTKNEDGLVKGSGRSNAGFNLFEALFKL-KDSLFEN 405

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A GL+++      L         N   A     +   D  L+ ++V+++++D +
Sbjct: 406 FGGHDFACGLSLKEDKINSLRK----AFENSYQASSNNAIDYYDLDLDTNSVDLSILDDM 461

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +  GP+G  NP PV+     ++ S+ V+     HL+    +     L+ I F +      
Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKNHLKFNVGN-----LKIIGFNMA----- 511

Query: 555 EFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589
            +L Q+    +     ++  N W+     Q ++   
Sbjct: 512 -YLTQNLLPYVTAIYLNISKNMWQKKLSLQGQLKSI 546


>gi|256851246|ref|ZP_05556635.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660670|ref|ZP_05861585.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii 115-3-CHN]
 gi|256616308|gb|EEU21496.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548392|gb|EEX24367.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           jensenii 115-3-CHN]
          Length = 753

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 154/576 (26%), Positives = 271/576 (47%), Gaps = 36/576 (6%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W      E    +  + +K+ +  + A++   R ++ D   ++   S      DP ++  
Sbjct: 3   WKKR---EATELSSELIEKYQLSPLTAKLFSLREINTDEKLNYWLNSTEEDFADPYLMHG 59

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +   RI QAI N EKI I+GDYD DG  +  +M   L+    + + +IPDR  DGYGP
Sbjct: 60  MQETVDRINQAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +    ++ + +G +LIITVD G T  + ++YA + G DVIV DHH  + +   A A+V+ 
Sbjct: 120 SMKRYQQIVADGTKLIITVDNGVTGIEEVRYAQDNGCDVIVTDHHSFQEQMPEAKAIVHC 179

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N  +        C AGV + +   +               +  L++L  + T+ D+V + 
Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRALME-----------DTMPELIELAMIGTIGDMVKVS 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316
           G     V +GL +      PGL+ALI+   +    I   + G+ I P +NA GR+  + L
Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDTGFQIAPRLNATGRLASARL 288

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL+SDD +E + LA K++ LN  R+ +   + E A  ++     + Q   V  +   
Sbjct: 289 AVDLLLSDDLEEAQKLAKKVEELNNERKELTQKVYESALNQIKKFGYNSQNTLV--LYDS 346

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++GL+A ++ EK  +P+  ++  EDG   GSGRS  GF++ + +    ++ +   
Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTKNEDGLVKGSGRSNAGFNLFEALFKL-KDSLFEN 405

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A GL+++      L         N   A     +   D  L+ ++V+++++D +
Sbjct: 406 FGGHDFACGLSLKEDKINSLRK----AFENSYQASSNNAIDYYDLDLDTNSVDLSILDDM 461

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +  GP+G  NP PV+     ++ S+ V+     HL+    +     L+ I F +      
Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKNHLKFNVGN-----LKIIGFNMA----- 511

Query: 555 EFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589
            +L Q+    +     ++  N W+     Q ++   
Sbjct: 512 -YLTQNLLPYVTAIYLNISKNMWQKKLSLQGQLKSI 546


>gi|309781214|ref|ZP_07675951.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia sp.
           5_7_47FAA]
 gi|308920035|gb|EFP65695.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia sp.
           5_7_47FAA]
          Length = 564

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 171/561 (30%), Positives = 265/561 (47%), Gaps = 23/561 (4%)

Query: 37  HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
           H I  ++AR+L  R V+       L+  +  L+P P  L   D AAR +  AI   ++++
Sbjct: 20  HGIHPVLARILAARGVARPDE---LSTELTDLLP-PAQLKGIDDAARYLADAIAAKKRLL 75

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I  DYD DGA + A+ +R L       +  +P+R   GYG +P ++    +E   +++TV
Sbjct: 76  IIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAHEKPDVLVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G      +  A   GIDV+V DHH   ++   A  +VNPN+        +L   GV+F
Sbjct: 136 DNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGFPSKNLAGVGVMF 195

Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR+           L +LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 196 YVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANNRLLVAQGLKRMRAG 255

Query: 274 QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG+ AL       +   +  +LG+ +GP +NA GR+ + +LG   L++DD      +
Sbjct: 256 RMCPGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSI 315

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD +N+ RR +E+ M ++A A + +    D      I V  + WH G++G++A+R+K
Sbjct: 316 AAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVE 449
           +KF RP F  +  +DG   GSGRSI GF +   +    +   G++VK GGHAMAAGLT+ 
Sbjct: 376 DKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRSPGLIVKFGGHAMAAGLTLR 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F      F+      +   + + V + DG  +        +++LE+   +G G P P
Sbjct: 436 EDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVELLET-QVWGQGFPAP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F      L     V           +  +   AI F               G   +V  
Sbjct: 495 SFCGEFDVLSQA--VLKDKHLKLKLGRGKQHFDAIWFNHAE---------PLGASAYVAY 543

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L  N + G  R Q+ +  A 
Sbjct: 544 RLDNNTFNGITRVQMVIEHAQ 564


>gi|29839946|ref|NP_829052.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila caviae
           GPIC]
 gi|29834293|gb|AAP04930.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila caviae
           GPIC]
          Length = 590

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 149/566 (26%), Positives = 262/566 (46%), Gaps = 13/566 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
             S+    WV    ++      A+ ++  +  I A++ ++R   +++  +DFL   +  L
Sbjct: 6   NSSVPSPNWVY--PKQDPALLSALIKELHLHPIAAQIFISRGFQTVNEVRDFLYVHLDNL 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DP +L D  KA  R++ A   +E +M++GD DVDG   VAL++ FL    +  +    
Sbjct: 64  H-DPELLLDMTKAIERLLLAKERNEHVMVYGDSDVDGMTGVALLVEFLRSIDMKVSYCFL 122

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
             ++  YG   SL+ K   E   L+ITVDCG T+   +     QGIDVI+ DHH    + 
Sbjct: 123 GALLKHYGEPSSLIAKMKEEKVTLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGKI 182

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
               A +NP   D       L   GV F +   +   LR++N   L  D   LLDLV L 
Sbjct: 183 PHCIATLNPKLRDRAYPNKELTGVGVAFKLARGVLNALRKENP-KLKVDTKHLLDLVTLG 241

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307
           TV DV  L+G NR  V  G+    +    GL  L     +    +T+ ++   I P +N+
Sbjct: 242 TVTDVGTLLGENRTMVRHGIKEIAKGSRLGLHKLCIFAGVKPSEVTSTDIVLKISPKLNS 301

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+ ++  G  LL++ D +  + +   LD +N+ R+ +E+ +      K+L    +I +
Sbjct: 302 LGRLADAAKGVELLLTQDPETADEIIQYLDKINRERQKIEADVFHDV-QKILKNKPEIVK 360

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            + IV+  + WH  ++ +++ARL + + +P   IS +  G G GS R+I  F +  ++  
Sbjct: 361 QAAIVLSSNDWHARVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQK 419

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                + +  GGH  AAG+ +           F    ++ +          +D   +   
Sbjct: 420 C--SSLFISYGGHDFAAGIIINEDQVEAFRKKFIHLVNSSLKKDKAVLTLPLDAQADFDE 477

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           ++  L+  ++   P+G GNP PVF    H+++  +++   HL++   +     L+ IAF 
Sbjct: 478 IDHDLLSSIDLFEPFGKGNPMPVFYTIVHQVRYPKLLPGNHLKLYL-NHGERNLEGIAFG 536

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCV 573
           +      E L  +  K + +     +
Sbjct: 537 LGDRI--EALKANWNKPLELAYTPRL 560


>gi|71083701|ref|YP_266421.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062814|gb|AAZ21817.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 564

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 170/579 (29%), Positives = 295/579 (50%), Gaps = 20/579 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           S+SG +W      + I     + Q+H   +I++R++++R    D     +N  +   + +
Sbjct: 3   SVSGKKWEQKKINQNI--VDKLKQEHDFSEILSRLIISRKFDNDEIAT-INTDLD--LNN 57

Query: 72  PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
             +   D  ++   +V +I N+EKI I GDYDVDG+A+ +L ++F    +     YIPDR
Sbjct: 58  VFLNNKDFSQSINLVVNSINNNEKICILGDYDVDGSAATSLFVKFFEDINHPFFYYIPDR 117

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             DGYG    L +K I E  +LII VDCGSTS +A+ +     I  ++IDHH++      
Sbjct: 118 EKDGYGATKKLFQKLILEKPKLIIMVDCGSTSNEAIDFLNENEIKSLIIDHHEINKPFPN 177

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A +++NP + +      +LCA  + +  L L+        K+    ++   L  V LATV
Sbjct: 178 ANSIINPKKDNSYKEYDYLCATTLTYFFLDLLI------KKIKTKINISDYLIYVLLATV 231

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+PL  LNR   +  L       N  L  L +     + I   +LGY+IGP +NAGGR
Sbjct: 232 CDVMPLRKLNRLIALNALKNFDITKNLPLSTLFDLNEKKNKININDLGYLIGPILNAGGR 291

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G+S   + LL S++ Q ++  +  L  LN  R+ +E+ +L     ++  +  + +   V
Sbjct: 292 LGKSQYATELLSSNNDQVIKDRSTYLIKLNNKRKEIENLLLN----EIDFKKIEKENKEV 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I+      + G++G++AARLK+ F +PS  I+   +    GS RS+  ++IG+++   ++
Sbjct: 348 IIYYNPNINEGLIGIIAARLKDYFNKPSIVITASNE-LLKGSARSVYNYNIGRIIKNLLD 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + I++ GGGH MAAG T+ + N     ++  +         +   +F  +  ++  A N 
Sbjct: 407 KDIIINGGGHNMAAGFTLNKANLKDFENYILEDFLK--SNTVNNNIFSYESEVSPLAFNQ 464

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
              D ++   P+G GN  P F   + K+    V+N  H+ +  +S+   ++++I+F    
Sbjct: 465 DFYDDIKKLEPFGTGNSVPTFMLRDLKIIKPIVLNNKHISVILKSKTGFSIKSISFNTIN 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T +GE LM  +   ++V G +  N W   K  QL + D 
Sbjct: 525 TMIGEHLMSYKN-NINVIGQIGENIWNNKKTLQLTIRDL 562


>gi|325915489|ref|ZP_08177802.1| exonuclease RecJ [Xanthomonas vesicatoria ATCC 35937]
 gi|325538290|gb|EGD09973.1| exonuclease RecJ [Xanthomonas vesicatoria ATCC 35937]
          Length = 579

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 174/565 (30%), Positives = 272/565 (48%), Gaps = 24/565 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+  +      P +  L+  P +L + D AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDTHGAQ---PRLGQLL-SPQLLHNSDVAAELLADAIARQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN   D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAVDGFPSKSLAGVGVIFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + +   LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R  +G 
Sbjct: 200 LALRSALRTRGAFADRSEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+S+D      +A  
Sbjct: 260 IGLRALIDASGRDIARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSRAREIAAT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +   +WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPIAACLFDAQWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL+++
Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLMQKFGGHAMAAGLSID 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 HAALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRVAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +             + + + 
Sbjct: 500 LFDGQ-FEVLQYRVLKERHLKLTLRCAGRPEPLSAIHFNGWHG-------SEPARMVRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593
             L  + +RG    QL V    P  
Sbjct: 552 YRLVSDDYRGGTAVQLIVEHCEPAT 576


>gi|241758665|ref|ZP_04756779.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria flavescens
           SK114]
 gi|241321176|gb|EER57372.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria flavescens
           SK114]
          Length = 566

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 166/562 (29%), Positives = 260/562 (46%), Gaps = 28/562 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+   R+V    +   L+  +  L+P    LT+C+ AA R+  AI   EKI+I
Sbjct: 22  GTDPLIARLCAARDV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAIERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L++TVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  +  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
                N WR +   QL +    
Sbjct: 543 YRPVANEWRNNLELQLYIDYWE 564


>gi|282850798|ref|ZP_06260172.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri 224-1]
 gi|282557750|gb|EFB63338.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           gasseri 224-1]
          Length = 506

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 151/519 (29%), Positives = 267/519 (51%), Gaps = 24/519 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W      +  N    + + + + DI A++   R ++     DF   +    + DP ++ 
Sbjct: 2   KWQQR---QASNLDQELIEDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K+  RI QAI N EKI I+GDYD DG  + ++MM  L     + + +IPDR  DGYG
Sbjct: 59  DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P+ S  ++ + +G +LIITVD G T  + ++YA   G+DVI+ DHH  + ++  +++ V+
Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPASFSTVH 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
            N           C AGV + +   + +             +  LLDL  + T+ D+V +
Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DAMPELLDLAMIGTIGDMVKV 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315
            G     V +GL +  +   PGL+ALI++  ++   ITA ++G+ I P +NA GR+ +++
Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGQITATDVGFNIAPRLNAVGRLADAS 287

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           L   LL+SDD ++ E +A K++ LN  R+ + + + E+  A+V  +    Q  + +V+  
Sbjct: 288 LAVELLLSDDEEQAEEIATKIEELNNERKELTAEVYEKCLAQVKEKGW--QHRNTLVLYS 345

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             +H G++GL+A ++ EK  +P+  ++ +E+G+  GSGRS  GF++   +   +++  L 
Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSNGFNLFDTLEP-MKDDFLD 404

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH  A GL+++        +  +              V   D  LN   V    +  
Sbjct: 405 KFGGHDFACGLSLKADKL----EELRSRFEKSFKPNTDLEVKDFDFELNLREVTPDTLTE 460

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMT 532
           +   GP+G GNP PVF+     ++S+  +     H++ T
Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFT 499


>gi|229824066|ref|ZP_04450135.1| hypothetical protein GCWU000282_01370 [Catonella morbi ATCC 51271]
 gi|229786420|gb|EEP22534.1| hypothetical protein GCWU000282_01370 [Catonella morbi ATCC 51271]
          Length = 777

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 264/584 (45%), Gaps = 30/584 (5%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAI--PDIVARVLVNRNV-SIDYAKDFLNPSIRLLM 69
           ++ + W      +     +A  Q+  +   D   R+ + R + +++  K+  N  +    
Sbjct: 3   LTHYEWQYRSLPDDWQDKVAEWQQAGLGYSDTFLRLCLARGLETLEEIKNATN-QMPQTF 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
            D  +L D ++A  RI  AI + E I+I+GDYD DG  S  ++   L         Y+P+
Sbjct: 62  HDAFLLYDMERAVERIQAAIEDQEVILIYGDYDADGITSTLILYETLEMLGARVIYYVPN 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+VDGYGPN +  + F+N+G QLI+T D G   ++A+++A   G+DVIV DHH+V++   
Sbjct: 122 RLVDGYGPNLARYQDFVNQGVQLILTCDNGVAGFEAIKWAMQAGVDVIVTDHHEVQATLP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
            AYA+V+P           L  AGV   +   +   +              L++L A+ T
Sbjct: 182 SAYAVVHPRHPQGHYPFPDLSGAGVALKLATALLGEVP-----------TELVELAAIGT 230

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAG 308
           V DVV L   NR  V+ GL + R     GL+ ++E   +       + +G+ IGP +NA 
Sbjct: 231 VSDVVSLRDENRTIVLSGLQLMRDTMRIGLRLMLEEEQVDMENMTADTIGFTIGPRLNAI 290

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+G+      LL + D +E    A +L  L   +      ++ +   +V  +       
Sbjct: 291 GRLGDPTPALELLKTQDEEE----AQELLALINEKNQERKDLVAKIMDQVSQRLGQGPIP 346

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSF 427
            +I+     W  G+VG++A RL E + RP+    ++ ++G+  GSGRS E   +      
Sbjct: 347 HIIIESDPSWPAGVVGIVAGRLSEHYQRPALIFQYQADEGQYKGSGRSTEAVHLFDW--L 404

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
              +  L + GGHA AAG+TV +  +       Q  A              ID  L    
Sbjct: 405 TDIKEHLAQFGGHAQAAGMTVAQDQWQEFVSALQAKAQVQTDIGTRKAPLTIDLSLKLGE 464

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545
           V    I  ++  GP+G  N  PVFA    K+  +R++     H ++    QD + L AI 
Sbjct: 465 VGTDFIQEVQLLGPFGMDNDKPVFAIEEAKINQMRLIGTNGQHAKLVL-GQDGQELNAIG 523

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           F            +  G  +   GHL +N W+     QL + D 
Sbjct: 524 FDFADR----MRDRQVGDSLTAVGHLDLNKWQNRISPQLLLSDI 563


>gi|256826846|ref|YP_003150805.1| single-stranded-DNA-specific exonuclease RecJ [Cryptobacterium
           curtum DSM 15641]
 gi|256582989|gb|ACU94123.1| single-stranded-DNA-specific exonuclease RecJ [Cryptobacterium
           curtum DSM 15641]
          Length = 1134

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 141/580 (24%), Positives = 253/580 (43%), Gaps = 22/580 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
              + +        + +   +P  +A  LV R +S    A +FL PS+     +P  +  
Sbjct: 21  QFYIHEADPAATEVLCKTLGLPRFIAATLVARGISSPQEAGEFLRPSLARDWGNPYCIPG 80

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            D+    +  A+ + ++IM+FGD+D+DG +S A++ R L         +IP R  +GYG 
Sbjct: 81  MDEVVGGLEAAVRSGKRIMVFGDFDLDGISSTAVLTRGLRELGGEVVPFIPRRQDEGYGI 140

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
             + +E+ + +   L++TVDCG    + ++   N+G+DV + DHH+          + +P
Sbjct: 141 TEAAIERLMKDEPDLLVTVDCGIACRNEVRLLKNRGVDVFITDHHEPADLVPEEVPVCDP 200

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
               D S    L   GV   ++  +     Q              DL  L T+ D++P+ 
Sbjct: 201 KIDPDCSESI-LAGVGVALKLIQALGARFGQ------PHLWREYTDLATLGTIADLMPMQ 253

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNL 316
             NRA V  G+        P + AL+    +   P+++ +L + + P +NA GR+G++ L
Sbjct: 254 QDNRALVADGVAHMNESPRPCIAALLHSAGVADKPVSSTSLSFSVIPRLNAAGRMGDAML 313

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL+ DD+   + +A  L+ +N  RR +E+ + E A  +        Q    ++V G+
Sbjct: 314 ALNLLLEDDAHRAQDIAADLEAVNSQRRAIEAELAEIATLQAQEI---YQGQRALIVAGE 370

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G+ G++A+RL   +G P+   + +E+G   GSGRS+   ++ K V       +L++
Sbjct: 371 GWHEGVKGIVASRLARSYGVPTILFAIDEEGIARGSGRSVGSVNLFKAVESC--SDMLIR 428

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A G+T+   +          F    +      P   ID  +N   + +  ++ L
Sbjct: 429 FGGHEAAVGVTLSAADLPAFTKRLCAFMDG-LDKNCFHPRIDIDACVNLDELTVENVEAL 487

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           E   P+G GN  P +   N  L   R V     H         + T+  I F        
Sbjct: 488 EQLAPFGQGNRQPTYLAQNVMLTRSRAVGADKNHFSTVLTD-GAHTVSGIMFHCAYIDR- 545

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
              +      ++    + V+ WRG +  +  +    P + 
Sbjct: 546 ---LMHCDSVVNAGFEVQVDEWRGRRSVKAMLSSIYPAQP 582


>gi|93005550|ref|YP_579987.1| single-stranded-DNA-specific exonuclease RecJ [Psychrobacter
           cryohalolentis K5]
 gi|92393228|gb|ABE74503.1| exonuclease RecJ [Psychrobacter cryohalolentis K5]
          Length = 608

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 172/605 (28%), Positives = 264/605 (43%), Gaps = 51/605 (8%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
            E       +  +      +AR+   R +        L   +  L+P    L    +A  
Sbjct: 14  DELPAALQPLAAQ---SLTLARLYAARGIMQPDE---LEIQLAGLLPA-EKLKGIIEAVD 66

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
            +  AI + ++I+I GD+D DGA S ALMMR L+      +  +PDR   GYG  P ++E
Sbjct: 67  LLDIAIDDGQRILIVGDFDCDGATSTALMMRALTAMGAKVDFLVPDRFKYGYGLTPEIVE 126

Query: 144 KFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
             I     Q+I+TVD G +S++ +  A   GI VI+ DHH    E  PA A+VNPN+LD 
Sbjct: 127 LGIKTYQPQMIVTVDNGISSHEGVARAQADGITVIITDHHLTTKETPPAEAVVNPNQLDC 186

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
                 L   GV F VL  + ++ R          +   LDLVAL T+ DV  L   NR 
Sbjct: 187 TFASKALVGVGVAFYVLGRLAKLRRDAG--KSTVQVSQYLDLVALGTIADVGVLDKNNRI 244

Query: 263 YVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
            V  GL   R  R     L  L +       + A++ G+++GP INA GR+    +G   
Sbjct: 245 LVHHGLAAIRQGRGSLGILALLEQAGRDPKKLQAQDFGFVLGPRINAAGRMDNMRIGIEC 304

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC------------------ 362
           L++DD    + LA +L+ LN+ RR +E  M  QA+  V                      
Sbjct: 305 LLADDWGTAQRLAQELEQLNRTRRQVEGEMRTQADNIVQALAATNISIEADVEESDDIIV 364

Query: 363 -----DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE------DGKGIG 411
                        IV+  D WH G++G++A RLKE    PS   +         +    G
Sbjct: 365 QNRLEKKSTNTRSIVLYQDDWHQGVIGIVAGRLKESHYLPSIVFAPANTERTGAEDAIKG 424

Query: 412 SGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
           S RSI G  I   +         ++   GGHAMAAGLT++R NF      F       + 
Sbjct: 425 SARSIAGVHIRDAIEQVAESHPDLISHFGGHAMAAGLTLKRGNFDAFVTAFNTVLA-QME 483

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529
             +       DG L A+  ++   + L  +  +G G   P+F     ++ + +V+   HL
Sbjct: 484 DEVFAEQKFTDGALQANDFSLWFAEHLAESSIWGHGFAPPIFDG-VFEVLNFKVLKDQHL 542

Query: 530 QMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           +++    D +  ++AI F    +         R +++H+   L +N W G +  QL + D
Sbjct: 543 KLSLRYPDVKYPIEAIQFNFDSSAW-----DYRAEKVHILFELDINEWNGKQSLQLMIKD 597

Query: 589 ASPVE 593
            + V+
Sbjct: 598 LALVK 602


>gi|319637801|ref|ZP_07992567.1| RecJ protein [Neisseria mucosa C102]
 gi|317400956|gb|EFV81611.1| RecJ protein [Neisseria mucosa C102]
          Length = 566

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+   R+V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GTDPLIARLCAARDV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ M  L+      +  +P+R   GYG  P L E    +G  L++TVD
Sbjct: 78  VADYDADGATACAVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVALDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  +  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|313888454|ref|ZP_07822121.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845483|gb|EFR32877.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 596

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/600 (27%), Positives = 275/600 (45%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW      +         +K  I +++ ++L+NR ++ +   ++FL PS+  L   P++L
Sbjct: 3   RWFIKNKSDPGIDY----KKLGINNVIYKILLNREINTEEDIREFLEPSLSNL-NSPILL 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  KA+  I+  +    KI I GDYDVDG  S  ++   L     N +  IP R+ DGY
Sbjct: 58  KDMVKASNIILSHLAKKNKIRIIGDYDVDGVTSTYILYEGLKTIGGNVSYDIPHRVEDGY 117

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N +L++K   +G + IIT D G  + DA+ YA +  IDV+V DHH+V           
Sbjct: 118 GINKNLIDKANEDGVKCIITCDNGIAARDAVDYAMSLDIDVVVTDHHEVPKILKDGNEVE 177

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+++P +         +C   V F     +   L     V         L   A
Sbjct: 178 IIPEASAVIDPKQAACSYPFKEICGGVVAFK----LIEYLFLIKGVDKEEFYEKFLPYAA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSI 305
           +ATVCDV+PL   NR  V +G+ + R   + GL ALIE  +I    I   +LG+++GP+I
Sbjct: 234 IATVCDVMPLTNENRVIVSEGIKLLRESKDLGLNALIEAADIKKDDIDVYHLGFILGPTI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+  +     L +  D       A +L  LN  R+ + S   E  + K+  +   +
Sbjct: 294 NSSGRLESAKEALELFLEKDYSIALEKAKELRDLNYERQKLTSDAFEVIDDKIQKEGL-L 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V++V  +  +  I+G++A ++KEK+ RPS  +S +      GSGRSIE +++    
Sbjct: 353 DKHKVLIVYEEGLNESILGIVAGKIKEKYYRPSVVLS-DSKDLIKGSGRSIEEYNM--FQ 409

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
            F+  +  L   GGH MA GL +   N         +     +          IDG L  
Sbjct: 410 EFSKSKEYLRSFGGHKMACGLALPLENLDDFIRDVDQ--KESLTRNDLIRKIYIDGNLEL 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             +++ L+  +E+  P+G GN  P F   N +++S+ ++      L+MT  SQD+     
Sbjct: 468 KYISMKLVQDIEALAPFGNGNSAPKFGAKNLQIKSLNILGKNKNFLKMTL-SQDNINYTG 526

Query: 544 IAFRVYGTPLGEF-----------LMQSRGKR--MHVTGHLCVNYWRGSKRCQLRVLDAS 590
           I F      L +            L+  R     + +  +L +N + G+   QL++    
Sbjct: 527 ILFEDSKVFLNKLASSYGREEVMGLLNGRPSNIFIDIVFNLDLNKFNGNVTIQLKIKSYR 586


>gi|239814215|ref|YP_002943125.1| single-stranded-DNA-specific exonuclease RecJ [Variovorax paradoxus
           S110]
 gi|239800792|gb|ACS17859.1| single-stranded-DNA-specific exonuclease RecJ [Variovorax paradoxus
           S110]
          Length = 573

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 176/588 (29%), Positives = 269/588 (45%), Gaps = 33/588 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +  +       A+ ++  +  ++AR+   R V    AKD L+  +  L+P P  L   
Sbjct: 2   KIIAREIPPRTVWAL-EQAGVHPLLARLFAARGV---LAKDELDDGLARLLP-PDTLHGT 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
            +AA  +  A+   +++ I  DYD DGA + A+ +R L      N +  +PDR+VDGYG 
Sbjct: 57  REAAVLLADAMAQDKRLCIVADYDCDGATACAVAVRGLRLLGAKNVSYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P + E+  + GA ++ITVD G  S + +  A  +G+ V+V DHH    E   A  LVNP
Sbjct: 117 TPPIAERVADSGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPAADVLVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F VL+ +   LR            L  LL LVAL TV DVV 
Sbjct: 177 NQPGCSFESKSIAGVGVMFYVLLALRSELRARGVFSAAAQPKLDVLLPLVALGTVADVVK 236

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R    P   A         ++  T  + G+ +GP INA GR+ +
Sbjct: 237 LDANNRRLVAQGLRRIRAGALPAGIAALFKAAGRNAAVATTFDFGFALGPRINAAGRLAD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-----A 368
             LG   L++DD+   + LA  LD +N+ RR +E  M +QA     +             
Sbjct: 297 MTLGIECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFGATADGSEAPP 356

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKM 424
           + I V    +H G+VG++A+R+K++F RP+F  +       + +  GSGRSI GF +   
Sbjct: 357 AAISVFDADFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDA 416

Query: 425 VSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +        G+L++ GGHAMAAG TV R  F        + AH  + A   T   + DG 
Sbjct: 417 LDLVAKRHPGVLLRFGGHAMAAGCTVAREKFEVFERALAEVAHEWLAASALTRQIETDGP 476

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           +    + I L+D L     +G G   P F     ++ S R+V   HL +    Q  + + 
Sbjct: 477 IAREYMRIDLVDTLHR-EVWGQGFAPPTF-SEEVEVVSQRLVGEKHLALKLRHQ-GQPVD 533

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            I F                 R+ +   L  + W+G +R +  V  A 
Sbjct: 534 GIWFGHTE---------PLPARVKLAFRLDADEWQGVRRVRFLVEGAE 572


>gi|241662658|ref|YP_002981018.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii
           12D]
 gi|240864685|gb|ACS62346.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii
           12D]
          Length = 564

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 171/561 (30%), Positives = 264/561 (47%), Gaps = 23/561 (4%)

Query: 37  HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
           H I  ++AR+L  R V+       L+  +  L+P P  L   D AAR +  AI   ++++
Sbjct: 20  HGIHPVLARILAARGVARPDE---LSTELTDLLP-PAQLKGIDDAARYLADAIAAKKRLL 75

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I  DYD DGA + A+ +R L       +  +P+R   GYG +P ++     E   +++TV
Sbjct: 76  IIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G      +  A   GIDV+V DHH   ++   A  +VNPN+        +L   GV+F
Sbjct: 136 DNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGFPSKNLAGVGVMF 195

Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR+           L +LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 196 YVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANNRLLVAQGLKRMRAG 255

Query: 274 QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG+ AL       +   +  +LG+ +GP +NA GR+ + +LG   L++DD      +
Sbjct: 256 RMCPGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSI 315

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD +N+ RR +E+ M ++A A + +    D      I V  + WH G++G++A+R+K
Sbjct: 316 AAELDGMNRERREIEAGMQQEALAILDSMNTIDGAGRHTIAVYNETWHQGVIGIVASRIK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVE 449
           +KF RP F  +  +DG   GSGRSI GF +   +    +   G++VK GGHAMAAGLT+ 
Sbjct: 376 DKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRSPGLIVKFGGHAMAAGLTLR 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F      F+      +   + + V + DG  +        +++LE+   +G G P P
Sbjct: 436 EDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVELLET-QVWGQGFPAP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F      L     V           +  +   AI F               G   +V  
Sbjct: 495 SFCGEFDVLSQA--VLKDKHLKLKLGRGKQHFDAIWFNHAE---------PLGASAYVAY 543

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L  N + G  R Q+ +  A 
Sbjct: 544 RLDNNTFNGITRVQMVIEHAQ 564


>gi|255348817|ref|ZP_05380824.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 70]
 gi|255503357|ref|ZP_05381747.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis
           70s]
          Length = 584

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 162/582 (27%), Positives = 271/582 (46%), Gaps = 13/582 (2%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           S  G +W      E   +   I ++  +   +A+VL++R   SI   +DFL+P +  L  
Sbjct: 7   SSLGQKWDYPKHNEVFLK--KILKEFHLHPAIAQVLISRGFQSIQEIRDFLHPQLSSLHS 64

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
              +  D +KA  R++QA  N+E +MI+GD DVDG   V L++ FL    V  +      
Sbjct: 65  T-SLFLDMEKAVVRLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           +   +G   SL+ + + +G  L+ITVDCG T+   +Q    QGIDVIV DHH    +   
Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVQAINKQGIDVIVTDHHMPTGKLPH 183

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249
             A++NP    +      L   GV F ++   Y  L +QD       DLL  LDLV+L T
Sbjct: 184 CIAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308
           + DV  L G NR  V  G+    +    GLK L     +    +++ NLG  I P +N+ 
Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ +S+ G +LL+S D + +  +  +L V+NQ R+ +E+ +L   E ++L     +   
Sbjct: 304 GRLADSSQGVKLLLSQDPKNIGTIVSELSVVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S IV+    WH  ++ +++ARL   + +P   I+ ++ G G GS R+I  F +  ++   
Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             E   +  GGH  AAGL ++          F     + +          +D  ++ S +
Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           N  LI  +E   P+G GN +PVF     +++  +++   H+++   +     L+  AF  
Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                   L  +    + +   L +         +L + D  
Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578


>gi|296315339|ref|ZP_06865280.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           polysaccharea ATCC 43768]
 gi|296837716|gb|EFH21654.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           polysaccharea ATCC 43768]
          Length = 566

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAARRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ +         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRHYFSDGIKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPNLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|160947571|ref|ZP_02094738.1| hypothetical protein PEPMIC_01506 [Parvimonas micra ATCC 33270]
 gi|158446705|gb|EDP23700.1| hypothetical protein PEPMIC_01506 [Parvimonas micra ATCC 33270]
          Length = 581

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/596 (28%), Positives = 279/596 (46%), Gaps = 37/596 (6%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
            +W                 +     I  ++L NR +     ++FL P+ + L  +P ++
Sbjct: 2   KKWFIKSDNGLTKENFKNNSEF--SYITCQLLANRKIDYKNVRNFLYPNYKYLH-NPFLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D A   +V AI N+  I I GDYD DG +S  ++M+ +   + N +  IP RI DGY
Sbjct: 59  KDLDTAIEILVDAIDNNLHIQIVGDYDQDGNSSTVVLMKGIGFFTDNISFSIPHRIEDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV------KSEEI 189
           G +  +++        LIIT D G ++++  +Y  +  I +I+ DHHQV           
Sbjct: 119 GISKGIVDNAKKNNVDLIITCDNGISAFEVAEYCNSMNIQMIITDHHQVCFDDKGNQILP 178

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
            A A++NP+R+D       LC AGV F ++  ++  L  D        L+ LL  V++ T
Sbjct: 179 KAKAIINPHRIDCEYPFKELCGAGVAFKLMQALFDELGGDENY-----LIDLLQFVSMGT 233

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309
           VCDVV L+  NR +V KGL +     N G+  L +  N    IT  +LG+ +GP INA G
Sbjct: 234 VCDVVDLVDENRFFVKKGLEILNSSKNIGINKL-KTENEIGKITTTSLGFKLGPCINAAG 292

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+  +++G  L + +D    +  A KL  LN+ R+ + +    +   K+     +     
Sbjct: 293 RLESASIGVELFLEEDENLADNYAKKLIELNEKRKNLTNEAYSRVNLKIKEN--EYFNDD 350

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA 428
           +IV+  +  H  I G++A R+K+ + +P+   S  +E+G   GS RSIEG+DI  +    
Sbjct: 351 IIVIYDNEIHESIAGIVAGRIKDHYYKPTLVFSNAKEEGILKGSARSIEGYDI--ISKLR 408

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
               +  K GGHAMAAG ++++ N   L +   K +  ++         KID  L+   +
Sbjct: 409 DFSNLFEKLGGHAMAAGFSIKKENLDTLRNELNKNSELVL--ENFIEKIKIDCSLDFKLL 466

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546
           N  ++D L+   PYG  NP P+F   N +++ I ++      +++   SQDS     I F
Sbjct: 467 NYNIVDELKLLEPYGKANPEPLFGTKNVEIKCISIIGKNKNVIKLVL-SQDSIEFSGIIF 525

Query: 547 RVYGTPLGEFLM------------QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +   +                   + K + +     +N +  +K  QL + D  
Sbjct: 526 TNFDKYIEYLNEKFKTNDIISKQDNIKNKFIDILYTPVINEYMNTKSIQLLIKDIR 581


>gi|239907925|ref|YP_002954666.1| single-stranded-DNA-specific exonuclease [Desulfovibrio magneticus
           RS-1]
 gi|239797791|dbj|BAH76780.1| single-stranded-DNA-specific exonuclease [Desulfovibrio magneticus
           RS-1]
          Length = 566

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 166/582 (28%), Positives = 265/582 (45%), Gaps = 23/582 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
            +W+         R  A+     +   +A +L  R      A D +L+P +R LM  P  
Sbjct: 3   KKWIFPAPLADAGRIAAVADGLGVSQPIAALLATRGYDTAEAMDRYLSPGLRHLMR-PAD 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   + A   IV+A+   + + I+GDYDVDG    AL++ F     ++    +P R  +G
Sbjct: 62  IPGLETAVGVIVRAVAAGQTLAIWGDYDVDGITGTALLLDFFRERGLSPLYRLPVRAEEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E+    GA+++ITVDCG T+   +  A   G+ V+V DHH    E  PA A+
Sbjct: 122 YGLNIGGIEELAAAGAEVLITVDCGITAVAEVARAKELGLSVVVTDHHLPGEELPPADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   D       L   GV F +   + R L  D       D+  LLDLVAL T+ DVV
Sbjct: 182 VDPKLGDGPGN--DLAGVGVAFFLAAALSRALPGD-----PGDVRRLLDLVALGTLADVV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIG 312
           PL G NR     G+++      PG+ AL E    +    + A  + + + P INA GR+G
Sbjct: 235 PLGGQNRILAKNGMLLLAEARRPGVYALKEVAGQNPKATLGASQITFGLAPRINAAGRMG 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             +    LL++ D +    LA  LD  N  RR  E A+  +A  +     +       + 
Sbjct: 295 RPDAALELLLAPDLETARPLAADLDAENTRRRAEEDAIQAEALRQA----EAAPDHFGLT 350

Query: 373 VEGDRWHPGIVGLLAARLKE-KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +    WH G++G++A+R+ E ++       +    G+  GSGRSI   D+  +       
Sbjct: 351 LFAPHWHQGVIGIVASRVAEARYRPTLILTADPAKGRLKGSGRSIPECDLHGL--LCDIA 408

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             L+  GGH  AAG +++    G +   F + A   +   + TP  ++DG L    ++  
Sbjct: 409 DSLLAFGGHKQAAGFSIDPDKLGEVSRRFNEAAAAALGHAVPTPSLRLDGELAFGEISST 468

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYG 550
           L+  L    P+G GNP P FA P   +Q+ R     H+ +T        T +  A+R+  
Sbjct: 469 LVRELALLEPFGCGNPEPAFASPPVTVQARRAFGENHVALTLRDPAAGVTFKGKAWRMA- 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               +   ++ G+ + V     + Y+ G    +LR+ D  P 
Sbjct: 528 ---AQIGQETAGRTVRVAYSPKITYFSGIPEIELRLRDLGPA 566


>gi|307729221|ref|YP_003906445.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           CCGE1003]
 gi|307583756|gb|ADN57154.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           CCGE1003]
          Length = 568

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 183/577 (31%), Positives = 270/577 (46%), Gaps = 33/577 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
              A A+  +H +  ++AR+   R V   D  +      +  L+P P +L  CD AA  +
Sbjct: 11  PADAEALV-RHGLHPVLARLYAARGVCMPDEIET----GLARLVP-PAMLKGCDDAALLL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM--- 142
             AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++   
Sbjct: 65  ADAIQQRRRMLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVALA 124

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
            +  +    L+ITVD G  S D +  A   GIDV+V DHH    +   A A+VNPN+   
Sbjct: 125 ARSASGKPDLLITVDNGIASVDGVAAANALGIDVLVTDHHLPGDQLPAARAIVNPNQPGC 184

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGL 259
                 +   GV+F VL+ +   LR+            L  LLDLVAL TV DVV L G 
Sbjct: 185 EFPSKCIAGVGVMFYVLLALRAQLRRRGAFGDSFPEPRLDGLLDLVALGTVADVVKLDGN 244

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLG 317
           NR  V +GL   R+       A + R        A   +LG+ +GP +NA GR+ + +LG
Sbjct: 245 NRVLVAQGLQRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSDMSLG 304

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
              L +DD      LA +LD +N+ RR +E+ M +QA   + +   D   A+ I +    
Sbjct: 305 IECLTTDDVGRAWELAQQLDTMNRERREIEAGMQQQALDDLSS--VDPDGATTITLFNPA 362

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGI 433
           WH G++G++A RLKEKF RP+F  +  +D      GSGRSI GF +   +      E G+
Sbjct: 363 WHQGVIGIVAGRLKEKFHRPAFTFAPADDSGQLVKGSGRSIAGFHLRDALDLISKREPGL 422

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           +VK GGHAMAAGLT+   +  R    F+      +         + DG L  +      +
Sbjct: 423 IVKFGGHAMAAGLTLATADVPRFTAAFEAVGREWLSDDALARTVETDGELEDAYFTPQFV 482

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +ML+ A  +G G P PVF+     + S  +V   HL++    +  +   AI F    T  
Sbjct: 483 EMLD-AAVWGQGFPAPVFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHTDT-- 537

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     R  V   L  + W G  R QL V  A+
Sbjct: 538 -------LPARTMVAYRLASDTWNGVSRVQLIVEHAA 567


>gi|121595721|ref|YP_987617.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax sp. JS42]
 gi|120607801|gb|ABM43541.1| exonuclease RecJ [Acidovorax sp. JS42]
          Length = 574

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 182/578 (31%), Positives = 272/578 (47%), Gaps = 30/578 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
             R +   ++  +  ++AR+   R +    AK+ L+ ++  L+P P  L    +AA  + 
Sbjct: 9   PPRVVWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLMGVQQAAALLA 64

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145
            AI    +++I  DYD DGA + A+ +R L      +    +PDR+VDGYG   S+ ++ 
Sbjct: 65  DAISQDRRLLIVADYDCDGATACAVGVRGLRLLGARHVQYLVPDRVVDGYGLTASIAQRV 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
              GA ++ITVD G  S + +  A   G+ V++ DHH    E   A A+VNPN+      
Sbjct: 125 HERGADVLITVDNGIASIEGVARAKALGLTVLITDHHLPGPELPAADAIVNPNQPGCGFE 184

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
              +   GV+F VL+ +   LR            L  LL LVAL TV DVV L   NR  
Sbjct: 185 SKSIAGVGVMFYVLMALRAELRARGVFDKATQPKLEPLLPLVALGTVADVVRLDNNNRRL 244

Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R  Q  PG++AL +     +P  T  + G+ +GP INA GR+ +  LG   L
Sbjct: 245 VAQGLKRIRAGQMQPGIQALFDAAGRKAPAATTFDFGFALGPRINAAGRLADMTLGIECL 304

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380
           ++DD      LA +LD +N+ RR +E  M EQA     +  D+  +    I V    +H 
Sbjct: 305 LTDDPARAADLARQLDAINRERRELEGGMREQALLLAESLFDEGQEPPPAISVFDPDFHE 364

Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434
           G+VG++A+RLK+K  RP+F      +  ++ +  GSGRSI GF +   +        G++
Sbjct: 365 GVVGIVASRLKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVAKRHPGVI 424

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +K GGHAMAAG TV   +F      F + A   + A   T   + DG L        L+D
Sbjct: 425 LKFGGHAMAAGCTVAEEHFDLFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAELVD 484

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552
            L     +G G   P F     ++ S R+V     HL +    Q  + + AI F      
Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSIKLLHQ-GQPVDAIWFGHTD-- 539

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     +R  +   L VN WRG +R Q  V    
Sbjct: 540 -------PLPERALLAFRLDVNEWRGERRVQFLVEGLE 570


>gi|281412682|ref|YP_003346761.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga
           naphthophila RKU-10]
 gi|281373785|gb|ADA67347.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga
           naphthophila RKU-10]
          Length = 955

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 156/580 (26%), Positives = 271/580 (46%), Gaps = 26/580 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W     Q        I+Q   + +I +R+LVNR  +  +  + FL  +      +P +
Sbjct: 2   KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFINESH-QHNPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D +KA   +++A   +E ++I GDYDVDG  S  ++  FL       ++YIP RI +G
Sbjct: 59  FNDMEKAVETLLEARSRNELVLIHGDYDVDGITSTVILKEFLEENGWRVDVYIPHRIEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG     +  F       ++TVDCG T+ D++  A   G+ VI+ DHH+V  +  PA A+
Sbjct: 119 YGIQLENILTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIITDHHEVNGDLPPADAI 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP    +      L   GV + ++  I   +               L+LVAL TV D+V
Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQAISEAIN-------YPHPERFLELVALGTVADMV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L+  NR +V KG+ +       GLK L+ER+ + + +T+ ++ Y I P +NA GR+G +
Sbjct: 232 SLLDENRYFVKKGIELLSNTKRVGLKRLLERLGLKN-LTSHDISYKIAPRLNAAGRMGSA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N    LLI +D  + + +  +L  LN  RR  E A+ ++A   +  + +D+ +  VIVV 
Sbjct: 291 NDAFNLLIMNDPAKADGVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++AA+L  ++ +P   +S +E     GS RS  G+DI  + +  +   I 
Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH+ A G +++R       ++ +      +          +D  +    ++   I+
Sbjct: 407 EEIGGHSSAVGFSLKRDQLESFREYIRN-----ISLEGREEKVIVDAEVRMEDIDDRFIE 461

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553
            ++   P+G GNP PV  F +  ++ I         +    ++  + L+ + +       
Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLIEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPV 592
               +     R  V  +L      G+     L  LD  PV
Sbjct: 522 SLSTLPVTPTRGDVVVNLRP---MGNGVSYYLISLDVKPV 558


>gi|167746206|ref|ZP_02418333.1| hypothetical protein ANACAC_00911 [Anaerostipes caccae DSM 14662]
 gi|167654199|gb|EDR98328.1| hypothetical protein ANACAC_00911 [Anaerostipes caccae DSM 14662]
          Length = 574

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 162/585 (27%), Positives = 281/585 (48%), Gaps = 30/585 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           +W     +    R   I +K  I  ++AR++ NR+++  +  + +L+ ++  +  DP ++
Sbjct: 3   KWFISKKKADFVR---IGEKFGIDPVIARLIRNRDITGEEEIRRYLSGTLSDI-SDPFMM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D ++A R + QA+    KI I  DYDVDG  S  ++ + LS      +  IPDRI DGY
Sbjct: 59  KDAEEACRLLHQAVRGGTKIRIISDYDVDGVISNYILWKSLSDLGGIVDFTIPDRIQDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190
           G N  +      +G  LIIT D G  ++D ++ A + G++VIV DHH+V  +        
Sbjct: 119 GMNSEMAVNAKEDGVGLIITCDNGIAAFDPVKKAKDLGMEVIVTDHHEVPYQMEEGKKRE 178

Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+VNP +         LC AGV F ++  +Y++  +++      DL  LL  +A
Sbjct: 179 RLPLADAVVNPKQESCAYPYKQLCGAGVAFQLMRALYQMEGRED-----KDLEPLLCFLA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           +ATVCDVV L   NR +V +GL       N GL+AL+   N   +P+ + +LG++IGP I
Sbjct: 234 IATVCDVVDLTEENRIFVREGLKRIDITENTGLRALLRAHNLEEAPVNSYHLGFVIGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +    RL +  D    E  A +L  LN  R+ M +  +++A  ++       
Sbjct: 294 NASGRLESAEKVLRLFLEKDMVTAEETAQELKELNDQRKGMTNEGVKEALDQIEQNGYG- 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V+V+     H  I G++A R+K+K  RP F ++   +G   GSGRSIE + + + +
Sbjct: 353 -EDKVLVIYLPDCHESIAGIIAGRIKDKVHRPVFVLTKGREGI-KGSGRSIENYHMFEAM 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +  + GGHAMAAG ++   +             + +          ID  +  
Sbjct: 411 NGV--RDVFSRFGGHAMAAGCSLSDESKVEEFRRRINGCCD-LKEDDFIKKVSIDVDMPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             ++  L+  +    P+G  N  P+FA     ++ I+V       ++++  S     +  
Sbjct: 468 DYISAELVRQMAVLEPFGKENKRPLFAHRKLFIERIQVFGDNRNVIRLSLLSDRGTRMTG 527

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           + F      +    M    + +  T +  +N +RG++  Q+R+  
Sbjct: 528 MIF--EEEDIFREKMGEGKQYITCTYYPDINVYRGNESLQIRIQH 570


>gi|169335840|ref|ZP_02863033.1| hypothetical protein ANASTE_02266 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258578|gb|EDS72544.1| hypothetical protein ANASTE_02266 [Anaerofustis stercorihominis DSM
           17244]
          Length = 793

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 167/576 (28%), Positives = 279/576 (48%), Gaps = 21/576 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
                    +    +T++  I  + A +L  +  S     + +LNP+I  L  DP +  D
Sbjct: 8   QKTSDNINYDFIDNLTKQFDISYLSALLLSIKGFSAFGEVETYLNPNISDLY-DPFLFKD 66

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             K   R+ + I N EK++IF DYD DG  S  ++ + LS   VN  + IP+R  +GYG 
Sbjct: 67  MKKVMERLKEVIRNREKVVIFSDYDCDGVTSSIILYKVLSFMKVNTKIIIPNRFTNGYGL 126

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +   ME  I+E   L+IT D G TS +  +   + GIDVI+ DHH        AYA++NP
Sbjct: 127 SDESMEMIIDEEPSLVITTDNGITSVEETEILKDSGIDVIITDHHTPPEVLPEAYAIINP 186

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
               D      LC AGV F +     +         L+FD+  +L    + T+ D+V L 
Sbjct: 187 KVEGDNYPFSELCGAGVAFKIACAAVK------FFELDFDISQILVFAMIGTIADIVSLK 240

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316
             NR     GL + R   N GL ALI++ +   + +   N+G+ IGP INA GR+ ++  
Sbjct: 241 SENRTIASLGLDLIRNTNNKGLNALIKKSDLDKNKLNCGNIGFQIGPRINAAGRLDDAKK 300

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
             RL +S+D +E+++L+ +L   N  R+ +E ++ +++E  +  + D ++ + ++ V G+
Sbjct: 301 AVRLFLSEDEKEVDILSHELCEYNDQRKDIEESIFKKSEEYI-KENDLLETSLILYVYGE 359

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            ++ G++G+ A+++ +K+ RP   +S  EDG    S RSI GFDI           +  K
Sbjct: 360 DFNEGVMGVAASKICDKYNRPVVIMSDSEDGFIKASCRSITGFDI--FKCLDNSRELFSK 417

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH+ AAG ++ER N  RL +   ++A       +       D     S +N+     L
Sbjct: 418 FGGHSAAAGFSIERENLDRLIEETNEYARKRKIENLFYKRVYYDTPAIPSNLNVKTSLEL 477

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLG 554
           E   P+G GN   +    + KL ++R +     HL+ +    +     AI F +     G
Sbjct: 478 EKFAPFGIGNSRSILCLRDVKLTNVRAIGKDGTHLKFSVLY-NGNYYDAIGFSM-----G 531

Query: 555 EFLMQSR-GKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            +L +    K   +   + VN ++G ++ Q  + D 
Sbjct: 532 HYLREYDFTKSFDIVFTMSVNSYKGREKLQFEIKDM 567


>gi|170733470|ref|YP_001765417.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           cenocepacia MC0-3]
 gi|169816712|gb|ACA91295.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           cenocepacia MC0-3]
          Length = 565

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 185/581 (31%), Positives = 272/581 (46%), Gaps = 28/581 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +        A A+  +H +  ++AR+  +R V    +   +  ++  L+P P  L  C
Sbjct: 3   RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI +  ++++  DYD DGA + A+ +R L       +  +P+R   GYG  
Sbjct: 58  ADAAALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           P ++E        L+ITVD G  S   ++ A  +GIDV+V DHH        A A+VNPN
Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255
           +        HL   GV+F VL+ +   LR+            L  LLDLVAL TV DVV 
Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313
           L G NR  V +GL   R        A + R       TA   +LG+ +GP +NA GR+ +
Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSD 297

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +     D   A  I +
Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429
               WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      
Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
           E  ++V  GGHAMAAGLT++  N  R    F+  A   +       V + DG L  +   
Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALAGVIETDGELEDAYFT 475

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              + +L+    +G G P P+F+     + S  +V   HL++   ++  +   AI F   
Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L         V   L  + W G  R QL V  A+
Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564


>gi|187928051|ref|YP_001898538.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii
           12J]
 gi|187724941|gb|ACD26106.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii
           12J]
          Length = 564

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 171/561 (30%), Positives = 263/561 (46%), Gaps = 23/561 (4%)

Query: 37  HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
           H I  ++AR+L  R V+       L+  +  L+P P  L   D AAR +  AI   ++++
Sbjct: 20  HGIHPVLARILAARGVARPDE---LSTELTDLLP-PAQLKGIDDAARYLGDAIAAGKRML 75

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I  DYD DGA + A+ +R L       +  +P+R   GYG +P ++     E   +++TV
Sbjct: 76  IIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G      +  A   GIDV+V DHH   ++   A  +VNPN+        +L   GV+F
Sbjct: 136 DNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCDFPSKNLAGVGVMF 195

Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR+           L +LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 196 YVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANNRLLVAQGLRRMRAG 255

Query: 274 QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PG+ AL       +   +  +LG+ +GP +NA GR+ + +LG   L++DD      +
Sbjct: 256 RMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSI 315

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           A +LD +N+ RR +E+ M ++A A + +    D      I V  + WH G++G++A+R+K
Sbjct: 316 AAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIK 375

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           +KF RP F  +  +DG   GSGRSI GF +   +        G++VK GGHAMAAGLT+ 
Sbjct: 376 DKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVKFGGHAMAAGLTLR 435

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              F      F+      +   + + V + DG  +        +++LE+   +G G P P
Sbjct: 436 EDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVELLET-QVWGQGFPAP 494

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F      L     V           +  +   AI F               G   +V  
Sbjct: 495 SFCGEFDVLSQA--VLKDKHLKLKLGRGKQHFDAIWFNHAE---------PLGASAYVAY 543

Query: 570 HLCVNYWRGSKRCQLRVLDAS 590
            L  N + G  R Q+ +  A 
Sbjct: 544 RLDNNTFNGITRVQMVIEHAQ 564


>gi|261400163|ref|ZP_05986288.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria lactamica
           ATCC 23970]
 gi|269210161|gb|EEZ76616.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria lactamica
           ATCC 23970]
          Length = 566

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AARR+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E  + +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAVEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGMKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRLG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|255020527|ref|ZP_05292591.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970047|gb|EET27545.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus
           caldus ATCC 51756]
          Length = 577

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 177/583 (30%), Positives = 261/583 (44%), Gaps = 26/583 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP---DPL 73
           RW            LA  ++ A+  ++AR+   R V        L   +  L P   D  
Sbjct: 3   RWQQRPL--LAPEILAEAKRVALDPVLARLYAARAVRE---TRQLRLDVEQLSPGEGDQG 57

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIV 132
           +L     AA  +  A+     + I GDYD DGA + AL+   LS C   A    +PDR  
Sbjct: 58  LL-GLGAAAELLADAVRQQRVVCIVGDYDCDGATATALLHEALSLCGARALRYVVPDRFR 116

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
            GYG  P L+ +      ++++TVD G TS D +  A  + + VI+ DHH   +    A 
Sbjct: 117 WGYGLTPELVAQLPA-DTEIVVTVDNGITSVDGVAAAKARNLQVIITDHHLPGAVLPAAD 175

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-PLNFDLLSLLDLVALATVC 251
           A+VNP +              V F +   + R L     +         L DLVAL TV 
Sbjct: 176 AIVNPRQPGCPFPWKSSSGVAVAFYLAAAVRRRLLDRGYLGAGAPHFGQLWDLVALGTVA 235

Query: 252 DVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGG 309
           DVV L   NR  V +GL   R  +  PGL AL+E   +    +TA  LG+ + P INA G
Sbjct: 236 DVVALEHNNRILVQQGLKRLRSGRARPGLAALLECAGVEPAAVTAATLGFTLAPRINAAG 295

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ +  LG RLL+S D  E   LA  LD LN+ RR +E+ M E A  +++    D     
Sbjct: 296 RLEDMGLGIRLLLSQDRAEAAELARTLDELNRQRRAIETQMSE-AAQQIVDDLPDCGHNL 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK--MVSF 427
            + V    WH G++G++A RL+E++ RP+ A +   DG   GSGRSI G  +        
Sbjct: 355 GLCVFQPEWHAGVIGIVAGRLRERYHRPAIAFAPVGDGFLQGSGRSIAGLHLRDSLADCV 414

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A    +L + GGHA AAGL + R +       +       +           DG L +S+
Sbjct: 415 ARAPHLLERFGGHAAAAGLRLRRAHLDEFVALWNTVLAERLTTEDLEESVFHDGPLESSS 474

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           +++ L   LE+AGP+G G P P+F     ++   + +   H ++  +       +AI FR
Sbjct: 475 LDLELARRLEAAGPWGNGFPEPLFWGR-FRICERKALPGGHWRLHLDDGAGRRFEAIRFR 533

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               P         G  +       VN + G++R QLR+    
Sbjct: 534 SPELP--------PGPWVEALYVPEVNRYAGTERLQLRLHALR 568


>gi|325679306|ref|ZP_08158891.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus
           8]
 gi|324108903|gb|EGC03134.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus
           8]
          Length = 699

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 161/577 (27%), Positives = 271/577 (46%), Gaps = 26/577 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW    G+   ++     QK  +  +   VL +R  +  D   +F        + DP  +
Sbjct: 24  RWRI--GKADSSKVAEFDQKTDLNRLTLEVLSSRGYNDLDSIVEFFT---EQELEDPFAI 78

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   I  A+   E I I+GDYD DG  S +++  +L     N   YIP+R  DGY
Sbjct: 79  KDMDKAVETINAAVDAYELICIYGDYDCDGVTSTSILFSYLESTGANVMYYIPER-DDGY 137

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   +E+   +G +LI+TVD G ++ +  +      + ++V DHHQ   E   A A+V
Sbjct: 138 GLNVKAVEELAEKGVKLIVTVDNGISAINEAERIYELDMKLVVTDHHQPGEELPKAEAVV 197

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P++ D  S    LC AGV   +   +       +       +    DL A+ TV DVVP
Sbjct: 198 DPHQTDCPSKFKDLCGAGVALKLCAAL-------DGGNYEAVIEQYSDLCAIGTVADVVP 250

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           L G NR  V  G          GL  ++E++NI    I ++++G+ IGP INA GR G  
Sbjct: 251 LNGENRTLVKTGFRYLPNTEIIGLDMMLEKLNIDRGHIVSDHVGFRIGPVINASGRFGSP 310

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               + L+S+D ++ E     +  LN  R+  E  +L+     + +    ++   VIV+ 
Sbjct: 311 ITAVKALLSEDDEDAESYVDTMITLNNMRKTSEQEILKDIREFIDSDPTVLEHR-VIVLA 369

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G  WH GI+G++A+++++K+G+P+  I+ E +G+  GS RS++G ++   V++   + +L
Sbjct: 370 GKGWHHGIIGIVASKIQDKYGKPTIIITDEGNGEARGSARSVKGLNMFLCVTYC--KDLL 427

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            K GGH  AAG ++   +         +++  +            D VL  + +++ ++ 
Sbjct: 428 TKFGGHECAAGFSLRSEDIEAFRQKVYEYSATLEKPA--VRTLYADKVLMPADISVDMVK 485

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPL 553
            L    P G GNP P+FA    K+  I  +    H + TF        QA+ F    T  
Sbjct: 486 GLNVLEPLGEGNPRPLFAILGAKVTDIVGLKENAHTKFTFVY-GGLRAQALMFGHDPTK- 543

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              L  ++G  + +   L +N +   +   ++V D  
Sbjct: 544 ---LCFTKGDNVDMLVQLEINSFNNKESVSIKVEDIR 577


>gi|325137771|gb|EGC60346.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis ES14902]
          Length = 566

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  +  D E  +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQKDDCE-FEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|153854674|ref|ZP_01995924.1| hypothetical protein DORLON_01922 [Dorea longicatena DSM 13814]
 gi|149752778|gb|EDM62709.1| hypothetical protein DORLON_01922 [Dorea longicatena DSM 13814]
          Length = 586

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 170/600 (28%), Positives = 296/600 (49%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           RWV L          AI +K+ I   +A ++ NR+ +  +  + +LN +I  L  D +++
Sbjct: 3   RWVLLRKGADF---EAIGKKYQISPRLACLIRNRDVIGEEAIERYLNGTISDLY-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I   +KI + GDYD+DG  +  +++  L       +  IPDRI DGY
Sbjct: 59  KDADKAIDILKEKIAEEKKIRVIGDYDIDGVNATYILLEGLERLGAYVDSDIPDRIGDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N  L+++  + G   IIT D G  + + + Y    G+ +IV DHH++  +E       
Sbjct: 119 GLNRHLIDRAYDAGIDTIITCDNGIAAANEIAYGKELGMTIIVTDHHEIPFDEIDGEKIY 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+++P + D +     LC A V + ++  ++  + +D+      DL  L++ VA
Sbjct: 179 RLPPADAVIDPKQKDCVYPFKGLCGAAVAYKLMEALWESMGKDST-----DLDDLIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSI 305
           +ATV DV+ L   NR +V +GL + +R  NPGLKALIE   I    + + ++G+++GP I
Sbjct: 234 IATVGDVMDLEDENRIFVKEGLQMLKRTKNPGLKALIECTGIDKESLNSYHIGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +    +LL     +E ++LA  L  LN +R+ M    ++ A+ +V  +  D+
Sbjct: 294 NASGRLDTAKRALKLLRVRTQKEADILAGDLKALNDSRKDMTEEAVKLAKEQV--ETTDL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+V+     H  + G++A R++E + +P F ++  EDG   GSGRSI+G+ + + +
Sbjct: 352 SDDRVLVIYLPDCHESLAGIVAGRIRECYYKPVFVLTDAEDG-AKGSGRSIDGYHMYEEL 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +    + IL K GGH +AAGL++E+ N         +     +          ID  +  
Sbjct: 411 NKC--KDILTKFGGHRLAAGLSLEKENIAEFRRRLNENC--TLTEEEMKEKVTIDMEMPF 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
             V   L+  LE   P+G GN  P+FA     L   R++      L++  +  +   ++A
Sbjct: 467 LCVTEELVKELELLEPFGKGNTKPIFAARGVTLLGARILGKNRNVLKIKAQDANGSVIEA 526

Query: 544 IAFRVYGTPLG-----------EFLMQSRGKRMHVT--GHLCVNYWRGSKRCQLRVLDAS 590
           + F+     L            + L+Q RG  + +    +  +N + G +  Q+ +    
Sbjct: 527 MLFQNVEGFLKNMEETYGRMEVDALLQGRGGHIKIAVTYYPDINEYMGKRTPQIVITHYR 586


>gi|218886235|ref|YP_002435556.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757189|gb|ACL08088.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 571

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 172/583 (29%), Positives = 279/583 (47%), Gaps = 24/583 (4%)

Query: 16  FRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
             W+             A  ++  + +++ R+L  R V S+D    +L+P++R L P   
Sbjct: 3   RDWIFRPEPVAASPPFAAWAERLEVSELIVRLLWRRGVGSVDDMALYLSPNLRHLAPL-A 61

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
                ++AA  +   +       ++GDYDVDG  S AL+   L+   + A  +IPDR  +
Sbjct: 62  EWPGLEQAASTLADGLLAGLPFAVWGDYDVDGVTSTALVKGVLAQHGMAAAHHIPDRREE 121

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG N + +E+   +G +L++TVDCG +  + ++ A   G+ V+V DHH        A A
Sbjct: 122 GYGLNVAWVERLAEQGVRLLLTVDCGISDVEPVRRARELGMTVVVSDHHMPPEGLPDANA 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           + NP   +       L   GV FLV+  +   L +        D+   LDLVAL T+ DV
Sbjct: 182 ICNPRLAEC--PCPALAGVGVSFLVMAAVNAALAER--TGKKADMRDFLDLVALGTLADV 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRI 311
           V L G NR  V  GL+       PG+ AL      +    I A  + + + P INA GR+
Sbjct: 238 VNLHGQNRILVKNGLLKIAEARRPGMAALKTVSGYNPTAAIGAGQVVFGLAPRINAAGRM 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++ L  +LL++DD  E   LA +LD  N  RR  E  +L+ A+ +   Q         +
Sbjct: 298 GKAELALQLLLTDDHAEAARLAQELDAENARRRAEEDRILDAAKKQAEGQL----DRMGL 353

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ GD WHPG++G++A+R+ ++F RP+  +S +      GSGRS+  FD+   ++     
Sbjct: 354 VLHGDDWHPGVIGIVASRIVDEFYRPTLILSSDGQSM-KGSGRSVAEFDLHAGLTRC--A 410

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NI 490
            +    GGH  AAG+++   +   L + F       +     TP  K+DG L  +   + 
Sbjct: 411 DLFTAFGGHHQAAGMSMPASHVDTLRERFDAVVRAELGDTPLTPRLKLDGELGFALAGDF 470

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFR 547
            L+  LE   P+G GN  PVFA P   ++ +R       H+++    +    TL+A A+R
Sbjct: 471 TLLKELEMLQPFGTGNAEPVFASPPVLVRDLRRFGPTRDHVELQLTDESCGITLRAKAWR 530

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 G+F    RG R+ +     ++ + G+    LR+ D  
Sbjct: 531 QS----GQFPDSLRGTRVRLAYTPRIDRYNGAASVDLRIKDWK 569


>gi|302671351|ref|YP_003831311.1| ssDNA exonuclease RecJ1 [Butyrivibrio proteoclasticus B316]
 gi|302395824|gb|ADL34729.1| ssDNA exonuclease RecJ1 [Butyrivibrio proteoclasticus B316]
          Length = 615

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 165/622 (26%), Positives = 281/622 (45%), Gaps = 59/622 (9%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV----------SIDYAKDFLNPSIR 66
           +W+    +   +R   +  K  I +I AR++ NR +          S +    +L+  + 
Sbjct: 3   KWMVANKKADFDR---LAGKFGIRNITARLIANRLINSRETEAEDCSDEAVSRYLDGDLS 59

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+ DP ++ D D  AR + + I   +KI + GDYDVDG  S  ++ R L       +  
Sbjct: 60  -LLHDPRLMADMDLGARIMYERIQAGDKIRVIGDYDVDGICSTYILARGLELLGAQVDYV 118

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK- 185
           +PDR+ DGYG +  L+++ +  G   IIT D G  + + + +A ++G+ VIV DHH+V  
Sbjct: 119 LPDRVKDGYGLSIKLVDEALQAGIDTIITCDNGIAASEQIAHAKDKGMTVIVTDHHEVPF 178

Query: 186 ------------------SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227
                                 PA A+++P R D       +C A V +  + ++     
Sbjct: 179 EISEPNSDITGDQEDSRVEILPPADAVIDPKRADGDYPFKEICGAVVAYKFMQVLSEFF- 237

Query: 228 QDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287
           +D+   L      +L    LATVCDV+ L   NR  V + L +     N GL+ALI + +
Sbjct: 238 EDSSDKLGNYFTEMLIYAGLATVCDVMELKDENRVIVKESLRLIGHTENVGLRALIHQNS 297

Query: 288 ISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
           +    I   + G+++GP +NA GR+  +    +L   +D  E  M+A  L  LN +R+ M
Sbjct: 298 LDEGKILCYHYGFVLGPCLNATGRLDLAERALKLFFEEDENEAAMMAANLKQLNDSRKDM 357

Query: 347 ESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404
               +++A   V  Q  D   +   V+V+     H  I G++A ++KEK+ RP+  ++  
Sbjct: 358 TKLGVDRAIEIVEEQKADYAGELPKVLVIYLPDVHESIAGIIAGKVKEKYYRPTIVLTKA 417

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
            DG   GSGRSI+ +D+ + +S   E  +  K GGH MAAGL++   N   L D   +  
Sbjct: 418 ADGGAKGSGRSIDKYDMYENLSACKE--LFTKFGGHKMAAGLSLPEENIDILKDRLNQNC 475

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
              + A    P   ID V+     +I L+   E   P+G GN  P+FA  +    S R++
Sbjct: 476 D--LAAGDFEPTLHIDMVMPLKYADIDLVREFERLEPFGNGNTKPIFAQRDVVFLSGRIL 533

Query: 525 NLAHL--QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG---------------KRMHV 567
                  +     +     + + F        ++L +  G                +++V
Sbjct: 534 GKNRNCGKYRVTDESGRIYEMMYFGDMD-KWHDYLSEKFGHDAVDDLYSGNTDGSMKVNV 592

Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589
             +  +N ++G +  Q  + D 
Sbjct: 593 AYYPDINSYQGRESLQFVMNDF 614


>gi|291537296|emb|CBL10408.1| exonuclease RecJ [Roseburia intestinalis M50/1]
          Length = 585

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 166/597 (27%), Positives = 279/597 (46%), Gaps = 43/597 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W  +           I ++  I  + AR++ NR V   +    +L   I  L  DP +L
Sbjct: 3   KWFVINKGADFA---GIAKRFGISPVTARLIRNRGVMGDEAIARYLKGGIGELY-DPHLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+    +VQ I   +KI + GDYD+DG  S  ++ + ++ C  + +  IPDR+ DGY
Sbjct: 59  LDSDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L+E+    G   IIT D G  +   + +A + G+ V+V DHH++           
Sbjct: 119 GINDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A A+VN  +++      +LC A V + V+ ++Y             +    L+ VA
Sbjct: 179 KRSEADAIVNSKQMECTYPYKNLCGAAVAWKVIQILYEK-----CDIAVEESYDFLENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
            ATV DV+ L   NR  V +GL       NPG++ALI +  +    I++ + G+++GP I
Sbjct: 234 FATVGDVMDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + +   L + +D ++   +A +L  LN  R+ M +  +E A  +V       
Sbjct: 294 NASGRLETAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEE---GN 350

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+VV     H  + G++A R++E   +P+F ++  EDG   GSGRSIE + +    
Sbjct: 351 TGEKVLVVYLPDVHESLAGIIAGRIREACHKPTFVLTKSEDGV-KGSGRSIEAYSMY--E 407

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +  K GGH MAAGL++   N     +         +      P  KID  +  
Sbjct: 408 ELCKCQELFTKFGGHPMAAGLSLPEANVEIFREKINACCG--LTEEDFIPKIKIDIPMPV 465

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
              +I L++ L    P+G  N  P FA  N  +    VV      L++T +++  +++ A
Sbjct: 466 DYPDIPLVNELLLLEPFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISA 525

Query: 544 IAFR-------VYGTPLGE------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F         YG   GE      FL ++ G RM V  +  +N ++G++  Q+ + 
Sbjct: 526 VYFGDVEEFREYYGRKYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIK 582


>gi|319764017|ref|YP_004127954.1| single-stranded-DNA-specific exonuclease recj [Alicycliphilus
           denitrificans BC]
 gi|317118578|gb|ADV01067.1| single-stranded-DNA-specific exonuclease RecJ [Alicycliphilus
           denitrificans BC]
          Length = 571

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 184/580 (31%), Positives = 271/580 (46%), Gaps = 30/580 (5%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
           E   RA    ++  +  ++AR+   R +    AK+ L+ ++  L+P P  L    +AA  
Sbjct: 7   EIPPRAAWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLKGAREAAAL 62

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143
           +  AI   +++ I  DYD DGA + A+ +R L      +    +PDR+VDGYG   S+  
Sbjct: 63  LADAIAQDKRLAIVADYDCDGATACAVGVRGLKLLGARHVQYLVPDRVVDGYGLTASIAR 122

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
           +   +GA ++ITVD G  S + +  A   G+ V+V DHH    +   A A+VNPN+    
Sbjct: 123 RVAQQGADVLITVDNGIASVEGVAEAKALGLAVLVTDHHLPGPQLPAADAIVNPNQPGCG 182

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                +   GV+F VL+ +   LR   +        L  LL LVAL TV DVV L   NR
Sbjct: 183 FESKAMAGVGVMFYVLMQLRAELRARGRFDQASQPRLEPLLPLVALGTVADVVRLDNNNR 242

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSR 319
             V +GL   R  Q  PG++AL +     +   T  + G+ +GP INA GR+ +  LG  
Sbjct: 243 RLVAQGLKRMRAGQMQPGIRALFDAAGRKAQAATTFDFGFALGPRINAAGRLADMTLGIE 302

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRW 378
            L++DD    + LA +LD +N+ RR +E  M EQA     +  D+  +    I V    +
Sbjct: 303 CLLTDDDAHADQLARQLDAINRERRELEGGMREQALLLAESLFDEGEEPPPAISVFDPDF 362

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA--VEEG 432
           H G+VG++A+RLK+K  RPSF  +       + +  GSGRSI GF +   +        G
Sbjct: 363 HEGVVGIVASRLKDKLHRPSFVFATSGAPGREHELKGSGRSIAGFHLRDALDLVAKRHPG 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +++K GGHAMAAG TV   +F      F + A   + A   T   + DG L        L
Sbjct: 423 VILKFGGHAMAAGCTVAAEHFAAFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAEL 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           +D L     +G G   P F     ++ S R+V     HL +    Q    + AI F    
Sbjct: 483 VDQLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSLKLLHQ-GRPVDAIWFGHTE 539

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 L         +   L VN WRG +R Q  V    
Sbjct: 540 QLPERAL---------LAFRLDVNEWRGERRVQFLVEGVQ 570


>gi|254804713|ref|YP_003082934.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis
           alpha14]
 gi|254668255|emb|CBA05107.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis
           alpha14]
          Length = 566

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTVFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|121634620|ref|YP_974865.1| putative single-stranded-DNA-specific exonuclease [Neisseria
           meningitidis FAM18]
 gi|120866326|emb|CAM10067.1| putative single-stranded-DNA-specific exonuclease [Neisseria
           meningitidis FAM18]
          Length = 566

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|332978269|gb|EGK14999.1| single-stranded-DNA-specific exonuclease RecJ [Psychrobacter sp.
           1501(2011)]
          Length = 615

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 171/618 (27%), Positives = 270/618 (43%), Gaps = 61/618 (9%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
            L  +       + Q+      + R+ + R V      ++    +  L+P    L D DK
Sbjct: 11  KLPDDLPENLQTLYQQ---SPTLTRLFLARGVGSSDELEY---GLSSLLPA-DGLKDIDK 63

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           A + + +AI   ++I+I GD+D DGA S ALMMR L+      +  +PDR   GYG  P 
Sbjct: 64  AVQILDEAIEQQQRILIVGDFDCDGATSTALMMRVLTEMGAQVDFVVPDRFKYGYGLTPE 123

Query: 141 LMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
           +++  I++   ++I+TVD G +S++ +  A    I V++ DHH        A A+VNPN+
Sbjct: 124 IVQLGIDQYAPEVIVTVDNGISSHEGVAKANENNISVVITDHHLTTKPNPAADAVVNPNQ 183

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           +        L   GV F +L  + +  R+      +  +   LDLVAL T+ DV  L   
Sbjct: 184 MQCTFDSKALVGVGVAFYLLGRLSKYRREAG--RSSVQVSRYLDLVALGTIADVGVLDHN 241

Query: 260 NRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLG 317
           NR  V  GL   R  + + G+ AL+E           ++ G++IGP INA GR+    +G
Sbjct: 242 NRTLVAHGLAAIREGRCSLGILALLELAGRDPRKMTVQDFGFVIGPRINAAGRMDNMRIG 301

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV----- 372
              LI+D  ++ + LA +LD LN+ RR +E  M +QA+  +          S        
Sbjct: 302 IECLIADSMEDAKRLAFELDKLNKERRYVEGGMRDQADDILRQLQPSQDSDSDKNSSQLL 361

Query: 373 ----------------------------VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404
                                       +  D WH G++G++A RLKE   RP+   + +
Sbjct: 362 AQPSQSNQSDTDVITEDKSKPSDLRSLILYQDDWHQGVIGIVAGRLKETHYRPAIVFAPD 421

Query: 405 EDGK------GIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRL 456
           +D K        GS RSI G  I   +    E     +   GGHAMAAGLT+++ +F   
Sbjct: 422 DDTKLGAEDAIKGSARSISGIHIRDAIESIAEGDPELITHFGGHAMAAGLTLKKKDFEAF 481

Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
              F+        A +       DG L A   ++  ++ L     +G G   P F     
Sbjct: 482 AQAFEDLM-QTYDASVFEEEQFTDGNLLAQDFSLQFVESLTQGYIWGHGFVPPQFDG-VF 539

Query: 517 KLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           ++   R++   HL+++         + AI F              R K +HV   L +N 
Sbjct: 540 EVIETRILKDKHLKLSLRYPGVLYPIDAIWFNYDNAKW-----DYRAKEVHVLFELDINE 594

Query: 576 WRGSKRCQLRVLDASPVE 593
           W G++  QL V D + VE
Sbjct: 595 WNGNQNIQLMVKDLAVVE 612


>gi|313668688|ref|YP_004048972.1| single-stranded-DNA-specific exonuclease [Neisseria lactamica
           ST-640]
 gi|313006150|emb|CBN87611.1| putative single-stranded-DNA-specific exonuclease [Neisseria
           lactamica 020-06]
          Length = 566

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDIGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPNLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|186476206|ref|YP_001857676.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           phymatum STM815]
 gi|184192665|gb|ACC70630.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           phymatum STM815]
          Length = 577

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 183/576 (31%), Positives = 269/576 (46%), Gaps = 33/576 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
              A A+  +H +  ++AR+  +R V   D  +      +  L P P  L  CD AA  +
Sbjct: 20  PADAEALI-RHGLHPVLARLYASRGVCLPDEVET----GLARLTP-PASLKGCDTAAALL 73

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM--- 142
             AI    ++++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++   
Sbjct: 74  ADAIEGKRRMLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVGLA 133

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
            +       L+ITVD G  S D ++ A   GIDV+V DHH    E   A A+VNPN+   
Sbjct: 134 AQRPGGKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNPNQPGC 193

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGL 259
                 +   GV+F VL+ +   LR             L  LLDLVAL TV DVV L G 
Sbjct: 194 SFPSKCMAGVGVMFYVLLALRAELRTRGAFGETRPEPRLDGLLDLVALGTVADVVKLDGN 253

Query: 260 NRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLG 317
           NR  V +GL   R  +  PG+ AL           +  +LG+ +GP +NA GR+ + +LG
Sbjct: 254 NRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARSASGFDLGFALGPRLNAAGRLSDMSLG 313

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
              L +DD      LA +LD +N+ RR +E+ M +QA   +     D   A+ I +    
Sbjct: 314 IDCLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALDDLS--GVDPAGATTITLFNPT 371

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEED--GKGIGSGRSIEGFDIGKMVSFA--VEEGI 433
           WH G++G++A RLKEKF RPSF  +  ++      GSGRSI GF +   +      E G+
Sbjct: 372 WHQGVIGIVAGRLKEKFHRPSFTFALADERGETVKGSGRSIPGFHLRDALDLVSKREPGL 431

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           + + GGHAMAAGLT+   +  R    F++     +   +     + DG L  +      +
Sbjct: 432 IARFGGHAMAAGLTIATADLQRFTAAFEQIGREWLTQDVLARTLETDGELEDAYFTPQFV 491

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           +ML+ A  +G G P PVF+     + S  +V   HL++    +  +   AI F       
Sbjct: 492 EMLD-AAVWGQGFPAPVFSGE-FDVMSQALVKDKHLKLQLM-RGRQRFNAIWFNHTE--- 545

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                 S   R  V   L  + W G  R QL V  A
Sbjct: 546 ------SLPARTTVAYRLSADSWNGVARVQLIVEHA 575


>gi|313113515|ref|ZP_07799104.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624242|gb|EFQ07608.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 710

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 187/568 (32%), Positives = 286/568 (50%), Gaps = 25/568 (4%)

Query: 30  ALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           A A+  +     ++A VL  R ++    A   L       + DP +LTD DKA  RI +A
Sbjct: 47  AAALAAQQKENALLAGVLTARGITDPTEALTLLAG--EEELSDPSLLTDMDKACERIWRA 104

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I   E I++FGDYDVDG  + AL+ + L          +P R  DGYG + + +    ++
Sbjct: 105 IDEGETIVVFGDYDVDGVTATALLYQHLKGMGATVKCMLPSREGDGYGLSRNAIRSIHDK 164

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
           G +LI+TVD G ++ +   YA   GID+I+ DHH        A A+V+P R DD S    
Sbjct: 165 GCKLIVTVDNGISAVEEADYAAELGIDLIITDHHLPPETLPKAIAVVDPRREDDTSPFKG 224

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           LC AGV F +   +       +  P    L    DL A+ TV DV+PL G NR  V  GL
Sbjct: 225 LCGAGVAFKLCAAL-------DGCPPEEMLDYCGDLAAVGTVADVMPLTGENRTLVKAGL 277

Query: 269 MVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
              +    PGL+AL+E V     P+TAEN+ Y I P INA GR+  +    +L++ +D  
Sbjct: 278 RQLQNTDRPGLEALLEEVGLAGKPVTAENVSYAIAPRINAAGRMDNAVTALQLVMCEDPD 337

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
               LA KL+ +N  R+  E  + + A+  +  + + ++   V+++ G  WHPG++G++A
Sbjct: 338 RAAELAHKLNEINTKRQETELQIFKAAQELLEQEPERLEDR-VMLLWGRDWHPGVIGIVA 396

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447
           +RL E+ GRP   ++ +E G+  GSGRS++GF++   +       +L++ GGHAMAAGL+
Sbjct: 397 SRLVERTGRPVIVVTIDEHGECKGSGRSVQGFNLHACIGAC--ADLLIRYGGHAMAAGLS 454

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           V   N   L      +A    P L TTP  + D  ++   V +  +  L+   PYGA NP
Sbjct: 455 VREENLPALRRRLNDWAARECPVLHTTP-LECDLPIHLDRVTVESVRKLDQLAPYGAENP 513

Query: 508 NPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
            PVF   N  L  +  V+   H ++     ++    A+ F +      E L  + G  + 
Sbjct: 514 TPVFLLQNAVLDGVYPVSEGRHSRLRLRQGNASVY-AVWFGMP----PEQLPYAMGDVVD 568

Query: 567 VTGHLCVNYWRGSKRCQL--RVLDASPV 592
              +L V  +   +  QL  R+LD  P 
Sbjct: 569 AALNLSV--YDSPRGAQLSGRILDLHPA 594


>gi|225548078|ref|ZP_03769363.1| hypothetical protein RUMHYD_00057 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040754|gb|EEG51000.1| hypothetical protein RUMHYD_00057 [Blautia hydrogenotrophica DSM
           10507]
          Length = 548

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 170/558 (30%), Positives = 269/558 (48%), Gaps = 29/558 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +WV    +        I Q++ I  ++AR++ NR V S +    +LN  +  L P P   
Sbjct: 5   KWVVSAKRADFQ---KIGQEYGIDPVIARLIRNREVQSSEQIDQYLNGKVEDL-PSPWFF 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA   I   I   + I I GDYD+DG  S  +++R L       + YIPDR+ DGY
Sbjct: 61  KDMEKAVNLIEAKIRQRKLIRIIGDYDIDGVVSTYILLRGLDRLKAKVDTYIPDRVADGY 120

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G +  L+EK + +G   I+T D G  +Y+ + YA  +G+ VIV DHH+V           
Sbjct: 121 GIHLPLIEKALEDGIDTILTCDNGIAAYNEIVYAKERGLTVIVTDHHEVPFTKKADEKEE 180

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+VNP + +      +LC A V + +++ +Y                  ++L A
Sbjct: 181 VLPPADAIVNPKQRNCSYPNKNLCGAAVAYKLILALYERYGIPKAEG-----EEFIELAA 235

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           +ATV DV+ L G NR  V +GL       N GL+ LI         ITA ++G++IGP +
Sbjct: 236 IATVGDVMDLQGENRVLVKEGLKRLENTWNLGLRELIRANGLEDKKITAYHIGFVIGPCL 295

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL S D +E   LA  L  +NQ+R+ + +  ++QA   V  +   +
Sbjct: 296 NASGRLDTAARSLELLKSQDVKEAARLAGDLLAINQSRKALTAQGVKQAVEMV--ETTSL 353

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           ++  V+VV     H  + G++A RL+E++ RP   ++  E     GSGRSIE + +    
Sbjct: 354 REDRVLVVYLPDCHESLAGIIAGRLRERYYRPVLVLTKGEQCV-KGSGRSIEAYSM--FE 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           S    + ++++ GGH MAAGL++E  N  RL     +     +      P   ID  +  
Sbjct: 411 SLTECKELMIQYGGHPMAAGLSMEEENVPRLRKQLNEKCK--LTKEDLCPKITIDVAMPF 468

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
           S +   L++ L+   P+G GNP PVFA    ++   RV       ++M   ++D   + A
Sbjct: 469 SYIRRELVEQLDLLEPFGKGNPKPVFAQKGVRVLGCRVFGQSRNVVKMQAVTEDGCGMDA 528

Query: 544 IAFRVYGTPLGEFLMQSR 561
           +          E L  +R
Sbjct: 529 VYLERPNLFWIELLRMNR 546


>gi|21231294|ref|NP_637211.1| putative single stranded DNA exonuclease [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|188991528|ref|YP_001903538.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21112947|gb|AAM41135.1| putative single stranded DNA exonuclease [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|167733288|emb|CAP51487.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas
           campestris pv. campestris]
          Length = 579

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 271/565 (47%), Gaps = 26/565 (4%)

Query: 41  DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
            ++ R+   R V  +  A    +P +  L+  P +L +   AA  +  AI    +I++ G
Sbjct: 24  PLLRRIYAARGVVDVHGA----HPRLGQLL-SPELLHNSRVAAELLADAIAAQRRILVVG 78

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       L++TVD 
Sbjct: 79  DFDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDLLVTVDH 138

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G   +  +  A  +G  V+V DHH       PA A+V+PN + D      L   GV+F V
Sbjct: 139 GIACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLVQDSFPSKTLAGVGVIFYV 198

Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG- 275
           L+ +  +LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R    
Sbjct: 199 LLALRGVLRARGAFAERAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLRDGKG 258

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             GL+ALI+      + ++A ++G+ + P +NA GR+ +  LG  LL+ +D      +A 
Sbjct: 259 CIGLRALIDASGRDAARLSASDIGFALAPRLNAAGRLEDMALGIELLLCEDWSRAREIAG 318

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
            L+ +N  RR ++  M + AE  V       D        +    WHPG++GL+A++LK+
Sbjct: 319 LLEEINAERRAVQQLMTDDAEQAVTKVMLAADGALPMAACLFDPEWHPGVIGLVASKLKD 378

Query: 393 KFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448
           +  RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL++
Sbjct: 379 RLHRPVIALAPAEPGSDQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSL 438

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E          FQ     +V A +       DG L A  ++    + L +AGP+G G P 
Sbjct: 439 EHRALAAFEQAFQTQVQAMVDASLLQAELHSDGELAAHELDHLHAEALRAAGPWGQGFPE 498

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F     ++   R++   HL++T       E L AI F  +             + + +
Sbjct: 499 PLFDGQ-FEVLQWRLLKERHLKLTLRCAGRAEPLNAIHFNGWRG-------SEPARTVRI 550

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L  + +RG    QL V    P 
Sbjct: 551 AYRLVGDDYRGGTAVQLIVEHCEPA 575


>gi|212702213|ref|ZP_03310341.1| hypothetical protein DESPIG_00224 [Desulfovibrio piger ATCC 29098]
 gi|212674339|gb|EEB34822.1| hypothetical protein DESPIG_00224 [Desulfovibrio piger ATCC 29098]
          Length = 576

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 170/586 (29%), Positives = 275/586 (46%), Gaps = 20/586 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
            RW+      G      + ++ +I  ++  +L  R +   +    +L+  +  L+P P  
Sbjct: 2   KRWLFREPPAGSPP-RGLARELSISPLLLDILWRRGLDSPEELDAYLSARLPDLVP-PSR 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                +AA  I +A+ + +K+ ++GDYDVDG  S  L++  L    + A  ++PDR  +G
Sbjct: 60  WPQFPQAAEVISKALLDGKKLAVWGDYDVDGITSSTLVLDVLEAHGLEALWHVPDRRSEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E+   +G  +++TVDCG +   A+  A   G+ V+V DHH    E  PA A+
Sbjct: 120 YGLNIPAIEELAAQGCGILLTVDCGISDMAAVARARELGMTVVVSDHHLPPPELPPADAI 179

Query: 195 VNPN-RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
            NP    +D     HL   GV F ++  +   L         F +  +LDLVAL T+ DV
Sbjct: 180 CNPRLGPEDDMPCPHLAGVGVAFFLMAAVNAAL--APHTGRRFKMDKVLDLVALGTLADV 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRI 311
           + L G NR  V  GL        PG+ AL         + + A  + + + P INA GR+
Sbjct: 238 MRLGGQNRILVRGGLDKLAEAARPGIAALKTVSGSDAAARLNAGQVVFRLAPRINAAGRM 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++   +LL S D  E   LA  LD LN  RR  E  +   A  +   Q +  Q+ ++ 
Sbjct: 298 GAADTALQLLRSKDHVEALRLAQHLDALNTQRREEEERIWAAAREQAHRQLEQRQRPAL- 356

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ G  WHPGIVG++A+R+ E+F RP+  +  +++    GSGRSI  FD+          
Sbjct: 357 VLYGGDWHPGIVGIVASRIVEEFYRPTIIL-CDDNNMMKGSGRSIREFDLY--AGLQKTA 413

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH +AAG+ +E     R  + F++   + +     TP   ++  L+    + +
Sbjct: 414 HVLAGFGGHKLAAGVRLEPNQLERFREAFEQVVADELGEQPLTPALLLECELDFQQASDS 473

Query: 492 -LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSETLQAIAFR 547
             +  LE   P+GAGN  PVFA P   +     +     H+++  +      TL A  + 
Sbjct: 474 AFLQELELMQPFGAGNAEPVFASPELTVVDRSPLGYSGDHVRLRLKDSASGITLMAKGWN 533

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           +       F   S G R+ V     ++Y+RG     + + D  PV 
Sbjct: 534 MATA----FPPSSVGSRIRVAYTPRLDYYRGVASIDVGIKDWQPVT 575


>gi|182418330|ref|ZP_02949625.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           butyricum 5521]
 gi|237666390|ref|ZP_04526375.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377712|gb|EDT75256.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           butyricum 5521]
 gi|237657589|gb|EEP55144.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 588

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 167/601 (27%), Positives = 280/601 (46%), Gaps = 43/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW     +        +  K+ I ++++++++NR+++ D+  K ++ P   +L   P  +
Sbjct: 4   RWFIKNKKMDY---KYMAHKYGITELMSKLIINRDITDDFLIKSYIKPEFNMLHE-PREM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D +KA   I+  I N  KI I GDYDVDG  SV ++   L  C  + +  IPDRI DGY
Sbjct: 60  KDMNKAVEIIINKIKNKNKIRIIGDYDVDGVISVYILYCALKRCGADVDYEIPDRIKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N  ++EK  +E    IIT D G ++ D ++ A   G+ VIV DHH +           
Sbjct: 120 GVNVGIIEKAKDEEIDTIITCDNGISAIDPIKTAKELGMTVIVTDHHDIPFVEDELGERT 179

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A A++NP + +       LC AGV F ++ ++Y   +   +          ++ +
Sbjct: 180 FIRSEADAILNPKQEECKYKFKSLCGAGVAFKLIQVLYEEFKISEEEAF-----DFIEFL 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA-LIERVNISSPITAENLGYMIGPS 304
           A+ATVCDVV L+  NR +V KGL    +  N GL+  LIE       I   +LG++IGP 
Sbjct: 235 AIATVCDVVDLVDENRVFVKKGLEKINKTTNLGLQELLIECEIQDKKIGVYHLGFIIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +  G RLL+  D +E   LA  L  LN+ R+ M    +E A   V  +  D
Sbjct: 295 INASGRLDNAKKGVRLLLCKDEKEAVTLAKDLVKLNEERKSMTMNGVEDAIEIV--ENSD 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           ++   V V+     H  + G++A R++EK+  P+  ++  E+G   GSGRSIE +++   
Sbjct: 353 MKNNKVFVIYLPHIHESLAGIIAGRIREKYNVPTLILTKSENG-AKGSGRSIEEYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +L K GGH MAAG +++  N         +     +          ID VL 
Sbjct: 410 EELVKCKDLLDKFGGHPMAAGFSLKEENIDEFRKRLNE--KTTLNEEDLLRKVTIDTVLP 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +   L++ LE   P+G  N  P+FA  +  +    ++      L+M  +++  + + 
Sbjct: 468 LDKITYDLVNELERLEPFGKANSKPLFAEKDINVIKAMILGKNRNVLKMKLKTKAGKLID 527

Query: 543 AIAFRVYGTP-------------LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            + F    T              +  +       ++ +  +  +N + G+   Q+ V + 
Sbjct: 528 GVYFGDIETFEEVIRDKYGNDQLIKLYDGSYNDVKLDMVFYPDINEYNGNVSLQVVVQNY 587

Query: 590 S 590
            
Sbjct: 588 R 588


>gi|329942499|ref|ZP_08291309.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           psittaci Cal10]
 gi|332287134|ref|YP_004422035.1| single-stranded-DNA-specific exonuclease [Chlamydophila psittaci
           6BC]
 gi|313847730|emb|CBY16720.1| putative exonuclease [Chlamydophila psittaci RD1]
 gi|325507043|gb|ADZ18681.1| single-stranded-DNA-specific exonuclease [Chlamydophila psittaci
           6BC]
 gi|328815409|gb|EGF85397.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           psittaci Cal10]
 gi|328914375|gb|AEB55208.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           psittaci 6BC]
          Length = 590

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 150/566 (26%), Positives = 257/566 (45%), Gaps = 13/566 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
             S+S   W+            +I ++  +  + A+  ++R   ++D  +DFL   +  L
Sbjct: 6   NSSVSNPTWIYPKYDP--ALLSSIIKELHLHPVAAQTFISRGFQTVDEVRDFLYVHLSNL 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DP +L D  KA +R++ A    E +M++GD DVDG   VAL++ FL    +  +    
Sbjct: 64  H-DPELLLDMSKAVQRLLLAKERGEHVMVYGDSDVDGITGVALLVEFLRSIEMKVSYCFL 122

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
              +  YG    L+ K   EG  L+ITVDCG T+   +     QGIDVIV DHH    + 
Sbjct: 123 GAFLKHYGEPSLLIAKMKEEGVTLLITVDCGITAGKEVSDINKQGIDVIVTDHHMPTGKI 182

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
               A +NP   D       L   GV F +   +   L Q N   L  D+  LLDLV L 
Sbjct: 183 PHCIATLNPKLRDHTYPNKDLTGVGVAFKLARGVVNAL-QKNNPKLKLDIKHLLDLVTLG 241

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307
           TV DV  L+G NR  V  G+    +    GL+ L     +    +T+ ++   I P +N+
Sbjct: 242 TVTDVGTLLGENRTMVRHGIKEIAKGSRLGLRKLCIFSGVKPSEVTSTDIVLKISPKLNS 301

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+ +++ G  LL++ D +  + L   LD +N+ R+ +E+ +      K+L    DI +
Sbjct: 302 LGRLADASKGVELLLTKDPEVADDLIQYLDKINRERQKIEADVFHDV-QKILKNQPDIVK 360

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            + IV+    WH  ++ +++ARL + + +P   IS +  G G GS R+I  F +  ++  
Sbjct: 361 QAAIVLSSQDWHSRVIPIISARLAKAYNKPVAIISNQG-GIGKGSLRTIGSFPLLGILQK 419

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  +  GGH  AAG+ +           F    ++ +          +D   +   
Sbjct: 420 CSPM--FISYGGHDFAAGIIINEDRIEAFRKKFIHLVNSSLKKEKAVVTLPLDARADFDE 477

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           ++  L+  ++   P+G GNP P+F    H+++  +++   HL++   +     L+ IAF 
Sbjct: 478 IDHDLLSSIDLFEPFGKGNPVPIFYTIVHQVRYPKLLPGNHLKLYL-NYGERNLEGIAFG 536

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCV 573
           +        L  S  + + +     +
Sbjct: 537 LGDRIG--ALKASWNQPLELAYTPRL 560


>gi|170694749|ref|ZP_02885900.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           graminis C4D1M]
 gi|170140380|gb|EDT08557.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           graminis C4D1M]
          Length = 568

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 183/570 (32%), Positives = 270/570 (47%), Gaps = 30/570 (5%)

Query: 32  AITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
            I  +H +  ++AR+   R V +      L   +  L+P P  L  CD+AA  +  AI  
Sbjct: 15  EILVRHGLHPVLARLYAARGVCLPDE---LETGLARLVP-PAALKGCDEAAALLADAIQQ 70

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFINE 148
             ++++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++    +  + 
Sbjct: 71  KRRMLVVADYDCDGATACAVAVRGLRMFGGKIDYLVPNRFEYGYGLTPEIVALAAQSASG 130

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
             +L+ITVD G  S D ++ A   GIDV+V DHH    +   A A+VNPN+         
Sbjct: 131 KPELLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDQLPAARAIVNPNQPGCEFPSKC 190

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
           +   GV+F VL+ +   LR+            L  LLDLVAL TV DVV L G NR  V 
Sbjct: 191 IAGVGVMFYVLLALRAELRRRGAFGDDFPEPRLDGLLDLVALGTVADVVKLDGNNRVLVA 250

Query: 266 KGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLIS 323
           +GL   R+       A + R        A   +LG+ +GP +NA GR+ + +LG   L +
Sbjct: 251 QGLQRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSDMSLGIECLTT 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           DD      LA +LD +N+ RR +E+ M +QA   + +   D   A+ I +    WH G++
Sbjct: 311 DDIGRAWELAQQLDTMNRERREIEAGMQQQALDDLSS--IDPDGATTITLFNPAWHQGVI 368

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439
           G++A RLKEKF RP+F  +  +D      GSGRSI GF +   +      E G++VK GG
Sbjct: 369 GIVAGRLKEKFHRPAFTFALADDSGQLVKGSGRSIAGFHLRDALDLISKREPGMIVKFGG 428

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGLT+   +  R    F+      +     +   + DG L  +      +DML+ A
Sbjct: 429 HAMAAGLTLATADVPRFTAAFEAVGREWLSDDALSRTVETDGELEDAYFTPQFVDMLD-A 487

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
             +G G P PVF+     + S  +V   HL++    +  +   AI F    T        
Sbjct: 488 AVWGQGFPAPVFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHTDT-------- 537

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               R  V   L  + W G  R QL V  A
Sbjct: 538 -LPARTTVAYRLASDTWNGVSRVQLIVEHA 566


>gi|330444197|ref|YP_004377183.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           pecorum E58]
 gi|328807307|gb|AEB41480.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           pecorum E58]
          Length = 582

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 155/580 (26%), Positives = 263/580 (45%), Gaps = 15/580 (2%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +WV             + ++  +  IVA++ V+R   S++    FL   +  L  DP + 
Sbjct: 12  KWVYPKQDHAFRS--KVIKEFHLNPIVAQIFVSRGFHSLEEIHSFLYSHLSSLY-DPKLF 68

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  KA  R++ A    E ++I+GD DVDG   VAL++ F     +  + +    ++   
Sbjct: 69  CDMPKAVDRLLLAREKQEHVVIYGDSDVDGMTGVALLVEFFQMIGIKVSYFFLGGMLKQL 128

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G   +L+ K   E A L+ITVDCG T+   +   T QGIDVIV DHH    +     A +
Sbjct: 129 GEILTLITKLKEENASLLITVDCGITAGKEISDITKQGIDVIVTDHHMPTGKIPHCVATL 188

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-PLNFDLLSLLDLVALATVCDVV 254
           NP    +      L   GV F +   +Y  L     +     DL   LDLV   T+ D+ 
Sbjct: 189 NPQLKGNTYPNRGLTGVGVAFKLAQGVYNALVSKGDLKKEQIDLKRFLDLVTFGTLTDMG 248

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
            L+G NR  V  G+    R    GL  L        S +T+ ++   I P +N+  R+ +
Sbjct: 249 ELLGENRMMVRYGIKEISRGRRLGLNKLCALSGVEKSKVTSTDIVLKIAPKLNSLARLAD 308

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
              G  LL++ D +  + L  K+DV+N+ R+ +E+ + +    K+L     I + + IV+
Sbjct: 309 PAEGVELLLTRDPKRADDLIKKIDVVNRERQRIEAEVFQSV-QKILEDDPKILKHAAIVL 367

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH  ++ ++AARL + + RP   IS ++ G G GS R++  F +  ++       +
Sbjct: 368 ASSEWHARVIPIIAARLAKAYNRPVVIISIQD-GIGKGSARTVGAFSLFGILKKC--SSL 424

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
            +  GGH  AAG+ ++  +       F    ++ +    TT  F +D     + ++  L+
Sbjct: 425 FLSYGGHDFAAGIILKENHIEDFRKKFIHLVNSSLKKDDTTITFPLDAHAEFNEIDYDLL 484

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             LE   P+G GNP PVF    H+++  +++   HL++ F  Q    L+AIAF +    L
Sbjct: 485 ASLELFEPFGKGNPVPVFYTTVHQVRYPKLLPGNHLKL-FVGQGERNLEAIAFGMGERIL 543

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      + +     ++   G     L + D   ++
Sbjct: 544 ELKFQWHLP--LEIVYTPRISSSSGV--IHLLIRDFRVIK 579


>gi|37519610|ref|NP_922987.1| single-strand-DNA-specific exonuclease [Gloeobacter violaceus PCC
           7421]
 gi|35210601|dbj|BAC87982.1| single-strand-DNA-specific exonuclease [Gloeobacter violaceus PCC
           7421]
          Length = 773

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 160/593 (26%), Positives = 273/593 (46%), Gaps = 27/593 (4%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIR 66
           G+   +   RW     QE   +A  + +   +  ++A+VL+NR ++  + A+ FL P   
Sbjct: 4   GLSSMLPKQRWRI--AQEDPVQARQLAEAFGLSPLIAQVLINRGLTTCELAEHFLAPESW 61

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
           +L           +A   + QAI +   I I GDYD DG  S AL++R +     +    
Sbjct: 62  VLPSAGEAFDQLPRALDLLAQAIESGTAIAICGDYDCDGMTSTALLLRAVRSLGGHIEYA 121

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP R+ +GYG N  ++E F   G  LI+TVD G  +Y  +  A   G+ VI+ DHH +  
Sbjct: 122 IPSRLQEGYGINLRIVEAFYERGIGLILTVDNGICAYAPIARAVELGMGVIITDHHDLPE 181

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A++NP  +   S    L   GV +++   + R L +            LL+L  
Sbjct: 182 RLPPADAILNPKMIPRTSPYAALAGVGVAYVLAGELARRLGRTGLADC------LLELFT 235

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304
           L TV D+ PL+G+NRA+V+ GL       N G++AL+        S +  E +G+ +GP 
Sbjct: 236 LGTVADLAPLVGVNRAWVLSGLAKIPGSSNTGVQALLAASGLAGRSDLKPEAIGFALGPR 295

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--- 361
           INA GRIG+      LL +DD       A + ++ NQ+R+ + + +  +A   +  +   
Sbjct: 296 INAVGRIGDPVTVIELLTTDDPAVAAERAAECELANQHRQALCAQIEAEAARMLEVEQAG 355

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
             D+    VIV+  + WH G++G++A+RLK++ G P F I+  E     GS R    F +
Sbjct: 356 GLDLGCERVIVLAREGWHHGVIGIVASRLKDRHGAPVF-IAAIEGEHARGSARGTPEFHV 414

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            + +       +L   GGH MA G ++   N     +   +FA   +      P+ ++D 
Sbjct: 415 YEALK--DSAELLTGFGGHPMAGGFSLLAANLPAFRERLVQFARARLAPEQVAPLVEVDA 472

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSE 539
            +  + V+  L+  ++   P G GN  PVF     ++   + +     HL +T     +E
Sbjct: 473 QVQLARVDRRLLGEIDRLQPCGLGNAEPVFWVAGARVVEQKAMGKTRTHLNLTVSDGTAE 532

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             +A+ +R+                + +   +  N W+G  + +L ++     
Sbjct: 533 R-RAVGWRMAEW-------LPLPPFVDIAFQVKENNWQGHSKVELELVGLRAA 577


>gi|294787852|ref|ZP_06753096.1| single-stranded-DNA-specific exonuclease RecJ [Simonsiella muelleri
           ATCC 29453]
 gi|294484145|gb|EFG31828.1| single-stranded-DNA-specific exonuclease RecJ [Simonsiella muelleri
           ATCC 29453]
          Length = 571

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 174/584 (29%), Positives = 268/584 (45%), Gaps = 31/584 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
                         + Q      ++A++   R V S D   D LN     L+     L+ 
Sbjct: 6   KIATRTVNPQYVNTLMQS-GANPLIAQLYAARAVFSADELSDQLN-----LLIPYQRLSY 59

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C+ AA RI Q+I   EKI+I  DYD DGA + ++ M+ L       + ++P+R   GYG 
Sbjct: 60  CEVAAERIAQSIEQQEKILIIADYDADGATACSVGMKGLGAMGAVVDFFVPNRFEHGYGL 119

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P L +    +GA+LIITVD G +S + +  A   G+DV+V DHH      +P   +VNP
Sbjct: 120 TPELADIAAEKGAKLIITVDNGISSCEGVARAKELGMDVVVTDHHVAG-RYVPDCIIVNP 178

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVV 254
           N+        +L   GV+F VL+ +  +LR            +L  LLDLVA+ TV DVV
Sbjct: 179 NQQGCDFPSKNLAGVGVIFYVLMALRVLLRGRGWFSGSLKEPNLGDLLDLVAVGTVADVV 238

Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIG 312
           PL   NR  V +GL   R      G++AL +            ++G+ + P +NA GR+ 
Sbjct: 239 PLDHNNRILVSQGLKRIRAGKTRAGIQALFQVARFDFHKAQPVDIGFKVAPRLNAAGRLD 298

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + ++G   L+SD+ +  + LA +L+ LNQ R+ +E  ML+    +        +  + + 
Sbjct: 299 DMSVGIACLLSDNLETAQQLANELNQLNQTRQEIEQDMLQNILGEFPDTLP--ENQTTLT 356

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430
              D +H G+VG++A+RLK+KF RP+F  + +++G   GSGRSIEG  +  +V       
Sbjct: 357 AYRDDFHQGVVGIVASRLKDKFYRPTFVFAPDDNGDLRGSGRSIEGVHLRDVVDVVAKKY 416

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++ K GGHAMAAGLT+           F++   ++V   I +  F  DG L    + +
Sbjct: 417 PDLISKFGGHAMAAGLTMRGDGLVIFQAAFEEAVRDVVNKEILSQTFLTDGSLKTEYLTL 476

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
               ML S   +G G P P F   +  L     +     H +     +D    +A+ +R 
Sbjct: 477 ECAQMLNS-QVWGQGFPQPTFC-DDFILLRQEFIGKDKQHKKAWLR-KDHHEFEAVFWRC 533

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                           + V     VN W      QL V     V
Sbjct: 534 ADE---------LPDEIRVVYRPVVNEWGNRVDLQLYVEHWEEV 568


>gi|161869777|ref|YP_001598945.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis
           053442]
 gi|161595330|gb|ABX72990.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis
           053442]
          Length = 566

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ +         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRDYFSDGIKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIDCLLARDDVEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A +         Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALSDFPKTLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +  ++         +++K GGHAMAAGL++  
Sbjct: 375 RFFRPTIVFAPADNGEVRGSGRSIPNLHLRDVLDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  +  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|62184820|ref|YP_219605.1| putative exonuclease [Chlamydophila abortus S26/3]
 gi|62147887|emb|CAH63634.1| putative exonuclease [Chlamydophila abortus S26/3]
          Length = 590

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 150/566 (26%), Positives = 258/566 (45%), Gaps = 13/566 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
             S+S   W+       +     I ++  +  + A+  ++R   +ID  +DFL   +  L
Sbjct: 6   NSSVSSPIWIYPKHDPALLSF--IIKEFHLHPVAAQTFISRGFQTIDEVRDFLYVHLSNL 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DP +L D  KA +R++ A    E +M++GD DVDG   VAL++ FL    +  +    
Sbjct: 64  H-DPELLLDMSKAVQRLLLAKERREHVMVYGDSDVDGITGVALLVEFLRSIEIKVSYCFL 122

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
              +  YG    L+ K   EG  L+ITVDCG T+   +     QGIDVIV DHH    + 
Sbjct: 123 GAFLKHYGELSLLIAKMKEEGVTLLITVDCGITAGKEVSDINKQGIDVIVTDHHMPTGKI 182

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
               A +NP   D       L   GV F +   +   L Q N   L  D+  LLDLV+L 
Sbjct: 183 PHCVATLNPKLRDHAYPNKDLTGVGVAFKLARGVVDAL-QKNHPKLKLDIQHLLDLVSLG 241

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307
           TV DV  L+G NR  V  G+    +    GL  L     ++   +T+ ++   I P +N+
Sbjct: 242 TVTDVGTLLGENRTMVRHGIKEIAKGSRLGLHKLCIFSGVNPSEVTSTDIVLKISPKLNS 301

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+ +++ G  LL++ D +  + +   LD +N+ R+ +E+ +      K+L    DI +
Sbjct: 302 LGRLADASKGVELLLTKDPEVADDIIQYLDKINRERQKIEADVFHDV-QKILKNHPDIVK 360

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            + IV+    WH  ++ +++ARL + + +P   IS +  G G GS R+I  F +  ++  
Sbjct: 361 QAAIVLSSQDWHSRVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQK 419

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  +  GGH  AAG+ +           F    ++ +          +D   +   
Sbjct: 420 CSPM--FISYGGHDFAAGIIINEDRIEAFRKKFIHLVNSSLKKEKAVVTLPLDARADFDE 477

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
           ++  L+  ++   P+G GNP P+F    H+++  +++   HL++   +     L+ IAF 
Sbjct: 478 IDHDLLSSIDLFEPFGKGNPVPIFYTIVHQVRYPKLLPGNHLKLYL-NYGERNLEGIAFG 536

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCV 573
           +        L  S  + + +     +
Sbjct: 537 LGDRIG--ALKASWNQPLELAYTPRL 560


>gi|187924546|ref|YP_001896188.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           phytofirmans PsJN]
 gi|187715740|gb|ACD16964.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           phytofirmans PsJN]
          Length = 568

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 183/572 (31%), Positives = 271/572 (47%), Gaps = 32/572 (5%)

Query: 32  AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
            I  +H +  ++AR+  +R V   D  +      +  L+P P+ L  C++AA  +  AI 
Sbjct: 15  EILTRHGLHPVLARLYASRGVCMPDEIET----GLARLVP-PVALKGCEEAAALLADAIQ 69

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFIN 147
              ++++  DYD DGA + A+ +R L          +P+R   GYG  P ++    +  +
Sbjct: 70  QKRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEIVALAARNAS 129

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
               L+ITVD G  S D ++ A   GIDV+V DHH    E   A A+VNPN+        
Sbjct: 130 GKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNPNQPGCTFPSK 189

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
            +   GV+F VL+ +   LR+            L  LLDLVAL TV DVV L G NR  V
Sbjct: 190 CIAGVGVMFYVLLALRAELRRRGAFNDAFPEPRLDGLLDLVALGTVADVVKLDGNNRVLV 249

Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +GL   R+       A + R       +A   +LG+ +GP +NA GR+ + +LG   L 
Sbjct: 250 AQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSDMSLGIECLT 309

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
           +DD      LA +LD +N+ RR +E+ M +QA   +     D   A+ I +    WH G+
Sbjct: 310 TDDIGRAWDLAQQLDTMNRERREIEAGMQQQALEDLSAINPD--GATTITLFNPSWHQGV 367

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           +G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +      E G++VK G
Sbjct: 368 IGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSISGFHLRDALDLISKREPGLIVKFG 427

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLT+   +  R    F+      +     +   + DG L  +      ++ML+ 
Sbjct: 428 GHAMAAGLTLAAADVPRFTAAFEAVGREWLSEDALSRTVETDGELEDAYFTPQFVEMLD- 486

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           A  +G G P PVF+     + S  +V   HL++    +  +   AI F    T       
Sbjct: 487 AAVWGQGFPAPVFSGE-FDIASQALVKDKHLKLQLV-RGRQRFNAIWFNHTDT------- 537

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                R  V   L  + W G  R QL V  A+
Sbjct: 538 --LPARTTVAYRLASDTWNGVSRVQLIVEHAA 567


>gi|89898634|ref|YP_515744.1| Mg-dependent 5'-3' ssDNA-specific exonuclease [Chlamydophila felis
           Fe/C-56]
 gi|89332006|dbj|BAE81599.1| Mg-dependent 5'-3' ssDNA-specific exonuclease [Chlamydophila felis
           Fe/C-56]
          Length = 589

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 151/567 (26%), Positives = 256/567 (45%), Gaps = 13/567 (2%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRL 67
           V  SI    WV       +     I ++  +  I A++ V+R   ++D  +DFL   +  
Sbjct: 5   VNSSIPSPIWVYPKQNPILLSV--IIKELHLHPIAAQIFVSRGFQTVDEVRDFLYVHLSN 62

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
           L  DP +L D  KA  R++ A   +E IM++GD DVDG + VAL++ FL    V  +   
Sbjct: 63  LH-DPELLLDMSKAIERLLLAKERNEHIMVYGDSDVDGISGVALLVEFLKSIDVRVSYCF 121

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
              ++   G   SL+ K   EG  L+ITVDCG T+   +     QGIDVI+ DHH    +
Sbjct: 122 LGALLKHSGEPSSLIAKMKEEGISLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGK 181

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                A +NP   D       L   GV F +   +   L + N       L  LLDLV L
Sbjct: 182 IPHCIATLNPKLKDRAYPNKELTGVGVAFKLARGVLNALEKKNPSIKVD-LKRLLDLVTL 240

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306
            TV DV  L+G NR  V  G+    +    GL  L     +    +T+ ++   I P +N
Sbjct: 241 GTVTDVGTLLGENRTMVRHGIKEISKGSRLGLHKLCVFSGVKPSEVTSTDIVLKIAPKLN 300

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           + GR+ +++ G  LL+++D +    +   LD +N+ R+ +E+ +      K+L     I 
Sbjct: 301 SLGRLADASKGVELLLTEDPEVANDIIQYLDKINKERQKIEADVFHDV-QKILKSNPSIV 359

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
           + + IV+    WH  ++ +++ARL + + +P   IS +  G G GS R+I  F +  ++ 
Sbjct: 360 KQAAIVLSSKEWHSRVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQ 418

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                 + V  GGH  AAG+ +           F    ++ +          +D      
Sbjct: 419 KC--SSLFVSYGGHDFAAGIIINEDQIEPFRKKFIHLVNSSLKKDKAVITLSLDARAEFD 476

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
            ++  L+  ++   P+G GNP P+F     +++  +++   HL++   +     L+ IAF
Sbjct: 477 EIDHDLLSSIDLFEPFGKGNPVPIFYTVVRQVRYPKLLPGNHLKLYI-NHGERNLEGIAF 535

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCV 573
            +      + L  +  K + +     +
Sbjct: 536 GLGDRI--DALKANWNKPLELAYTPRL 560


>gi|294502083|ref|YP_003566148.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber
           M8]
 gi|294342067|emb|CBH22732.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber
           M8]
          Length = 785

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 161/591 (27%), Positives = 282/591 (47%), Gaps = 33/591 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W +       +    +        +VA++L    + S++ A+ FL+P+     P P  L 
Sbjct: 4   WTTPSSPPVPDGLEDLA---GGNALVAKLLAQLGIQSVEDARPFLDPAAYDPAP-PEALP 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +K   RI  AI   E+++++GD+DVDG  S AL++  L     +   ++P R  + +G
Sbjct: 60  DLEKGVSRIRSAIERGEQVLVWGDFDVDGQTSTALLVEALRELGADVGFHVPHRERESHG 119

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   +E ++++G  +++T D G +S++ ++ A ++G+DV+V DHH + S   PA AL+N
Sbjct: 120 VNWEHLEGYLDDGVGVVLTCDTGVSSHEPIRKALDRGVDVVVTDHHDLPSRLPPAEALIN 179

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P RL +    G L   GV +  +  +     Q+            LDLVAL  V D+  L
Sbjct: 180 PKRLPERHPLGTLPGVGVAYKFVQKLAE--GQNLTEGTRLRPTGYLDLVALGIVADIAVL 237

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
            G  R  + +GL   R    PGLKA+++  N        E++GY IGP +NA GR+G++N
Sbjct: 238 RGDTRYLLQQGLEKLRETERPGLKAVMDNANVTREEADEEDIGYRIGPRLNAVGRLGDAN 297

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           +   LL ++D  E   +A  L+ LN  R+L+ + + E A  K+  +  ++ Q +V+V+ G
Sbjct: 298 ISIPLLTTEDPGEARAIADDLEELNDRRKLLTAQVFEAARRKLRWE-PELLQTAVLVLYG 356

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK-------------GIGSGRSIEGFDIG 422
           ++W  G++G++A RL EK+ +P+  ++   +                 GS RS+E  +I 
Sbjct: 357 EQWPAGVIGIVAHRLTEKYYKPTILLTSASEEYSRKEGDSEDQEALTRGSARSVEDLNIT 416

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
             +  A    +L   GGH MAAG+T+ +    R      +               +I+  
Sbjct: 417 AAI--ADHADMLQSFGGHPMAAGVTLPKAKIDRFRRLVSRSIVGQKGGEEIVETLQINSY 474

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET 540
           L+   + + L D L    P+G GN  PVFA  N ++     +    +HL++T    +S +
Sbjct: 475 LSLEELTLQLADDLRQVAPFGPGNREPVFACRNLQVSEYEKIGSDGSHLKVTVTGPESAS 534

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            + + +      L   +         +   +  N +RG +  QL   D+  
Sbjct: 535 REVLWWNAGEEDLPSGI-------FDLAVTVSTNVFRGERSLQLTWEDSRV 578


>gi|254455449|ref|ZP_05068878.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082451|gb|EDZ59877.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 567

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 172/579 (29%), Positives = 302/579 (52%), Gaps = 20/579 (3%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS-IRLLMP 70
           S+SG +W+    +   N    I Q     +IV++++++RN +        NPS IR    
Sbjct: 3   SVSGKKWIE--EKISKNSIEKIKQDFNFSEIVSKLIISRNFNYKEIYSIENPSVIRNEFK 60

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +     D   A+  + ++I N E I IFGDYDVDG+A+ +L+ +F  +       YIPDR
Sbjct: 61  ND---KDFINASLLLEKSINNKELICIFGDYDVDGSAATSLLAKFFDYIKQPYFFYIPDR 117

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             DGYGP+ S+ +K I +  +L+I VDCGST+  ++ Y  ++ I  I+IDHH++      
Sbjct: 118 ERDGYGPSNSVFKKLILKKPKLVIMVDCGSTANQSIAYLNDKKIKSIIIDHHEIDKPYPK 177

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A  ++NP +  +   + + CA  + +  L +  + ++       +FD+ + L  V LA V
Sbjct: 178 ANVIINPKKNINNLSKDYYCATTLTYFFLEIFIKKIK------SSFDITNYLIYVLLALV 231

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CDV+PL  +NR   +  +   + + N   + L E  N  + +T E+LG+ IGP IN+GGR
Sbjct: 232 CDVMPLRKINRYIGLNIIKDFKIKDNVVFRTLYELCNKRNNLTIEDLGFFIGPIINSGGR 291

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +S + + LLIS++   ++    +L  LN  R+ +E  +L     ++     + +   V
Sbjct: 292 ISDSRIAADLLISENPNFVKAKLNELIRLNNIRKDIEQKILN----EINFAKLEKENKDV 347

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           I+        G++G++A+RLK+ F +PS  I+  ++    GS RS   ++IG ++   V+
Sbjct: 348 IIYYNPTIKEGLIGIIASRLKDYFNKPSIVITSSQE-ILKGSARSTINYNIGNVIKKLVD 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           + ++  GGGH MAAG ++++     L DF  K                 +  ++ +A+N+
Sbjct: 407 KKLIQNGGGHNMAAGFSMKKNKLKDLEDFMLKDFALKNKKTSLVNT--YEAEISPNAINM 464

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
             ++ +   GPYG  NP P F   N K+  ++  N  H+ + F+ +  + +++I F    
Sbjct: 465 DFVNEINKIGPYGNRNPIPTFLIKNLKITKVKTFNEKHINVIFKPKVGKFIKSICFNSLN 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           T LG++L+  + K +HV   +  NYW  +K  QL + D 
Sbjct: 525 TKLGKYLLTYK-KNVHVIAQIHQNYWNNNKVLQLNIKDL 562


>gi|71065294|ref|YP_264021.1| exonuclease RecJ [Psychrobacter arcticus 273-4]
 gi|71038279|gb|AAZ18587.1| exonuclease RecJ [Psychrobacter arcticus 273-4]
          Length = 608

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 176/606 (29%), Positives = 265/606 (43%), Gaps = 53/606 (8%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82
            E       +  +      +AR+   R +   D     L   +  L+P    L    +A 
Sbjct: 14  DELPAALQPLAAQ---SLTLARLYAGRGILQPDE----LEIQLASLLPA-ERLKGVTEAV 65

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
           R +  AI   ++I+I GD+D DGA S ALMMR L+      +  +PDR   GYG  P ++
Sbjct: 66  RLLDVAIDEGQRILIVGDFDCDGATSTALMMRALTAMGAKVDFLVPDRFKYGYGLTPEIV 125

Query: 143 EKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           E  I     Q+I+TVD G +S++ +  A   GI VI+ DHH    E  PA A+VNPN+LD
Sbjct: 126 ELGIETYQPQMIVTVDNGISSHEGVARAQADGITVIITDHHLTTKETPPAEAVVNPNQLD 185

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                  L   GV F VL  + ++ R+         +   LDLVAL T+ DV  L   NR
Sbjct: 186 CNFASKALVGVGVAFYVLGRLAKLRREAG--KSTVQVSQYLDLVALGTIADVGVLDKNNR 243

Query: 262 AYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
             V  GL   R  R     L  L +       + A++ G+++GP INA GR+    +G  
Sbjct: 244 ILVHHGLAAIRQGRGSLGILALLEQAGRDPKKLQAQDFGFVLGPRINAAGRMDNMRIGIE 303

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV--------------------- 358
            L++DD    + LA +L+ LN+ RR +E  M  QA+  V                     
Sbjct: 304 CLLADDWATAQRLAQELEQLNRTRRHVEGEMRAQADDIVQALAAADAGIEANADESGDII 363

Query: 359 --LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF------EEDGKGI 410
                         IV+  D WH G++G++A RLKE    PS   +        +D    
Sbjct: 364 VQHKLEKKTTNTRSIVLYQDDWHQGVIGIVAGRLKESHYLPSIVFAPADTKRIGDDDAIK 423

Query: 411 GSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468
           GS RSI G  I   +         ++   GGHAMAAGLT++R NF      F       +
Sbjct: 424 GSARSITGVHIRDAIEQVAESHPDLISHFGGHAMAAGLTLKRGNFDAFVAAFNDVLA-QM 482

Query: 469 PALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH 528
              +       DG L A   ++   + L  +  +G G   P+F     ++ + +V+   H
Sbjct: 483 DDEVFAEKKFTDGPLQAGDFSLWFAEYLAESSIWGHGFAPPIFDG-VFEVLNFKVLKDKH 541

Query: 529 LQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           L+++    D +  ++AI F    +         R  ++HV   L +N W G +  QL + 
Sbjct: 542 LKLSLRYPDVQYPIEAIQFNFDSSAW-----DYRAGKVHVLFELNINEWNGKQSLQLMIK 596

Query: 588 DASPVE 593
           D + V+
Sbjct: 597 DLALVK 602


>gi|59800857|ref|YP_207569.1| hypothetical protein NGO0414 [Neisseria gonorrhoeae FA 1090]
 gi|240013732|ref|ZP_04720645.1| hypothetical protein NgonD_03626 [Neisseria gonorrhoeae DGI18]
 gi|240112525|ref|ZP_04727015.1| hypothetical protein NgonM_02901 [Neisseria gonorrhoeae MS11]
 gi|240120802|ref|ZP_04733764.1| hypothetical protein NgonPI_03304 [Neisseria gonorrhoeae PID24-1]
 gi|268598594|ref|ZP_06132761.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           MS11]
 gi|59717752|gb|AAW89157.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae FA
           1090]
 gi|268582725|gb|EEZ47401.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           MS11]
          Length = 566

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGIKEPNLGGLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML  A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AARLNNLNIERREIEQSMLRDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  +  DG L A  + +     L +   +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPACDITLEQAQNL-ACHVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566


>gi|148652599|ref|YP_001279692.1| single-stranded-DNA-specific exonuclease RecJ [Psychrobacter sp.
           PRwf-1]
 gi|148571683|gb|ABQ93742.1| exonuclease RecJ [Psychrobacter sp. PRwf-1]
          Length = 611

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 173/594 (29%), Positives = 269/594 (45%), Gaps = 54/594 (9%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
             + R+ + R +  D   D+    +  L+P    L+D D+A   + +AI    +I+I GD
Sbjct: 28  PTLTRLFLARGIQSDQDLDY---GLSALLPA-QGLSDVDEAVTLMDEAIEAQRRILIVGD 83

Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI-NEGAQLIITVDCG 159
           +D DGA S ALMMR LS      +  +PDR   GYG  P +++  I      +IITVD G
Sbjct: 84  FDCDGATSTALMMRILSQMGAVVDFVVPDRFKYGYGLTPEIVQLGIEQYQPDMIITVDNG 143

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +  A   GI VI+ DHH     +  A+A+VNPN+L        L   GV F +L
Sbjct: 144 ISSHEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVNPNQLGCSFESKALVGVGVAFYLL 203

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPG 278
             + +  R+         +   LDLVAL T+ DV  L   NR  V  GL   R  + + G
Sbjct: 204 GRLAKYRREAG--RSTAQVSRYLDLVALGTIADVGVLDHNNRILVNHGLAAIRAGRCSLG 261

Query: 279 LKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           + AL+E         + ++ G++IGP INA GR+    +G   L++DD  + + LA +LD
Sbjct: 262 ILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRIGIECLMADDMSDAKRLAFELD 321

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCD-----------------------------DIQQA 368
            LN+ RR +E  M EQA+  +                                  D  Q 
Sbjct: 322 KLNKERRYVEGEMREQADEILRQLQPNSDRSQAQTTDEQSDDSDDSLKQQAESFTDKAQP 381

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF------EEDGKGIGSGRSIEGFDIG 422
             +++  D WH G++G++A RLKE   RP+   +       +      GS RSI G  I 
Sbjct: 382 RSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDTQLDGQDAIKGSARSIPGIHIR 441

Query: 423 KMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
             +    E     +   GGHAMAAGLT++R +F    + F+    + V A +       D
Sbjct: 442 DAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEAFELQMQS-VEASVFEEQQFTD 500

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-E 539
           G L A   ++  ++ L     +G G   P F      +   R++   HL+++ +      
Sbjct: 501 GQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDG-VFDVVQARILKDKHLKLSLKYPGVMY 559

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            + AI F              R +++HV   L +N W+G++  QL V D +  +
Sbjct: 560 PIDAIWFNYDPKKW-----DYRAQQVHVLFELSINEWQGNQNIQLMVKDVAVTQ 608


>gi|320107076|ref|YP_004182666.1| single-stranded-DNA-specific exonuclease RecJ [Terriglobus
           saanensis SP1PR4]
 gi|319925597|gb|ADV82672.1| single-stranded-DNA-specific exonuclease RecJ [Terriglobus
           saanensis SP1PR4]
          Length = 616

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 174/613 (28%), Positives = 287/613 (46%), Gaps = 41/613 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RWV             I     +P  VA +LV R +S  + A  FL PS+  L  DP ++
Sbjct: 6   RWVLPEVDPD--AVAEIASSCTLPLPVAAMLVRRGISSAEEALRFLQPSLSQLH-DPFLM 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-----ANMYIPDR 130
               +A  R+++A+ + E I+I+GDYDVDG  +  L+   +   +          +IP R
Sbjct: 63  LGMHEAVDRVLEAVLHREPILIYGDYDVDGTTATVLLKTAIDRITPKGTPSLVRFHIPHR 122

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           I++GYG   S++     +G +L+I+VD G  ++ A   A  QG+D+IV DHH      +P
Sbjct: 123 ILEGYGMQTSILAGAAEQGIRLVISVDTGIRAFAAADEARAQGMDLIVTDHHLPDDSGVP 182

Query: 191 A-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----------FDLL 239
              A++NPN+         +C AGV F +   +   +  D   P              L 
Sbjct: 183 EAVAVLNPNQPGCPYPFKAICGAGVAFKLAHALLLSVAADPNDPTFNPISREALEEKFLP 242

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-------SPI 292
           S L L+A+AT+ D VPL G NRA V  GL   RR    GL+AL++               
Sbjct: 243 SFLKLLAIATIADSVPLNGENRAIVALGLEQLRRPNQAGLRALMQLSGFELENGSVIKSF 302

Query: 293 TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352
            A ++ + I P INA GR+  +    +L ++ D  E + LA KL  LN +RR  E+ +LE
Sbjct: 303 NARDIAFRIAPRINAAGRMDTATDVVQLFLTRDPAEAQTLAEKLHALNTDRREAEARILE 362

Query: 353 QAEAKV---LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           + EA++        D++   V+V++G+ WH G+VG+LA+R+ E+ GRP+  ++  EDG+ 
Sbjct: 363 EVEAQIAKLRETDADLESHGVVVLDGEGWHRGVVGILASRVVERTGRPALVLA-HEDGQA 421

Query: 410 IGSGRSIEGFDIGKMVSFAVEEG-ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468
            GSGRS+ GF +   ++F   E  +  + GGHA A G ++       L      ++   +
Sbjct: 422 HGSGRSVAGFHLLDAITFVDNESAVFTRFGGHAFAVGFSLPSNVVPDLKLRLSAYSVPRL 481

Query: 469 PALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLA 527
              +  P   +D  +  + ++  L+  +    P+G  NP PVFA     +   I+ +   
Sbjct: 482 TPSVLAPTILLDSEVRLADIDANLLAAVRKCEPFGNDNPEPVFAAFGVTILDPIKTLKEK 541

Query: 528 HLQMTFESQDSET-LQAIAFRVYGTPLG--EFLMQSRGKRMHVTGHLCVN---YWRGSKR 581
           H ++    +D      A+ +    +     E L  ++G ++ +      N    +     
Sbjct: 542 HAKLRVRQEDGGLAFAALCWSRSDSWPERLEKLGVTQGSKVDIAFRPRENSHPDFG--TA 599

Query: 582 CQLRVLDASPVEG 594
             L + D    +G
Sbjct: 600 IDLELCDIRLTDG 612


>gi|148270376|ref|YP_001244836.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga
           petrophila RKU-1]
 gi|147735920|gb|ABQ47260.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga
           petrophila RKU-1]
          Length = 955

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 150/559 (26%), Positives = 264/559 (47%), Gaps = 22/559 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W     Q        I+Q   + +I +R+LVNR  +  +  + FL  +      +P +
Sbjct: 2   KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFINESH-QHNPFL 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D +KA   +++A   +E ++I GDYDVDG  S  ++  FL       ++YIP RI +G
Sbjct: 59  FNDMEKAVETLLEARSRNELVLIHGDYDVDGITSTVILKEFLEENGWRVDVYIPHRIEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG     +  F       ++TVDCG T+ D++  A   G+ VI+ DHH+V  +  PA A+
Sbjct: 119 YGIQLENILTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIITDHHEVNGDLPPADAI 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP    +      L   GV + ++  I   +               L+LVAL TV D+V
Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQAISEAIN-------YPHPERFLELVALGTVADMV 231

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L+  NR +V KG+ +       GLK L+ER+ + + +T+ ++ Y I P +NA GR+G +
Sbjct: 232 SLLDENRYFVKKGIELLSNTKRVGLKRLLERLGLKN-LTSHDISYKIAPRLNAAGRMGSA 290

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           N    LLI +D  + + +  +L  LN  RR  E A+ ++A   +  + +D+ +  VIVV 
Sbjct: 291 NDAFNLLIMNDPAKADGVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            + WH G++G++AA+L  ++ +P   +S +E     GS RS  G+DI  + +  +   I 
Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH+ A G +++R       ++ +      +          +D  +    ++   I+
Sbjct: 407 EEIGGHSSAVGFSLKRDQLESFREYIRN-----ISLEGREEKVIVDAEVRMEDIDDRFIE 461

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553
            ++   P+G GNP PV  F +  ++ I         +    ++  + L+ + +       
Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLIEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521

Query: 554 GEFLMQSRGKRMHVTGHLC 572
               +     R  V  +L 
Sbjct: 522 SLSTLPVTPTRGDVVVNLR 540


>gi|66768654|ref|YP_243416.1| putative single stranded DNA exonuclease [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|7228156|emb|CAB77039.1| putative single stranded DNA exonuclease [Xanthomonas campestris]
 gi|66573986|gb|AAY49396.1| putative single stranded DNA exonuclease [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 582

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 172/568 (30%), Positives = 271/568 (47%), Gaps = 29/568 (5%)

Query: 41  DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
            ++ R+   R V  +  A    +P +  L+  P +L +   AA  +  AI    +I++ G
Sbjct: 24  PLLRRIYAARGVVDVHGA----HPRLGQLL-SPELLHNSRVAAELLADAIAAQRRILVVG 78

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       L++TVD 
Sbjct: 79  DFDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDLLVTVDH 138

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G   +  +  A  +G  V+V DHH       PA A+V+PN + D      L   GV+F V
Sbjct: 139 GIACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLVQDSFPSKTLAGVGVIFYV 198

Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG- 275
           L+ +  +LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R    
Sbjct: 199 LLALRGVLRARGAFAERAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLRDGKG 258

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             GL+ALI+      + ++A ++G+ + P +NA GR+ +  LG  LL+ +D      +A 
Sbjct: 259 CIGLRALIDASGRDAARLSASDIGFALAPRLNAAGRLEDMALGIELLLCEDWSRAREIAG 318

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
            L+ +N  RR ++  M + AE  V       D        +    WHPG++GL+A++LK+
Sbjct: 319 LLEEINAERRAVQQLMTDDAEQAVTKVMLAADGALPMAACLFDPEWHPGVIGLVASKLKD 378

Query: 393 KFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448
           +  RP  A++  E G     GS RSI G  I  +++   A   G++ K GGHAMAAGL++
Sbjct: 379 RLHRPVIALAPAEPGSDQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSL 438

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           E          FQ     +V A +       DG L A  ++    + L +AGP+G G P 
Sbjct: 439 EHRALAAFEQAFQTQVQAMVDASLLQAELHSDGELAAHELDHLHAEALRAAGPWGQGFPE 498

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDS----ETLQAIAFRVYGTPLGEFLMQSRGKR 564
           P+F     ++   R++   HL++T          E L AI F  +             + 
Sbjct: 499 PLFDGQ-FEVLQWRLLKERHLKLTLRCAGRAGRAEPLNAIHFNGWRG-------SEPART 550

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +   L  + +RG    QL V    P 
Sbjct: 551 VRIAYRLVGDDYRGGTAVQLIVEHCEPA 578


>gi|152989907|ref|YP_001355629.1| single-strand DNA-specific exonuclease [Nitratiruptor sp. SB155-2]
 gi|151421768|dbj|BAF69272.1| single-strand DNA-specific exonuclease [Nitratiruptor sp. SB155-2]
          Length = 522

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 166/546 (30%), Positives = 262/546 (47%), Gaps = 36/546 (6%)

Query: 50  RNVSIDYAKDFLNPSIRL------LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           R ++       L    +        +P P  + D  KA+ RI  AI N EKI I GDYDV
Sbjct: 2   RVLTKQDIFTILQERFKEGFVKLSSLPHPSSMKDMQKASLRIADAIKNGEKIAIVGDYDV 61

Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           DG  S ALM  F S         IP+R   GYG +P ++E+       LIITVD G +++
Sbjct: 62  DGVVSTALMKEFFSLIDYPIEAKIPNRFRHGYGLSPKIIEEL--GDVDLIITVDNGISAH 119

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           +A      +GID+I+ DHH       PAYA+VNP +         +C A V + ++  + 
Sbjct: 120 EAATLCQEKGIDLIITDHHTPPQTLPPAYAIVNPKQEQCSFAYPEICGAQVAWFLIGQLK 179

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
           + L  D       D+   LD++A+A + DV+PL  +NR+ V  GL +  R   P +  L 
Sbjct: 180 QDLGLD------VDMKQFLDILAVAIIADVMPLRHINRSLVQAGLKMFERSERPAIAYLR 233

Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
             +       +E++G+ I P IN+ GR+ ++NL  + L + D  +  +   +L  LN  R
Sbjct: 234 SVLK-KHTFHSEDIGFTIAPIINSAGRMEDANLALQFLNAKDFFDASVYYARLLSLNMQR 292

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           +  E  +L+++  +V  +        VIVV G+ W+ G+VG++A+RL ++F RP+  ++ 
Sbjct: 293 KEEERRVLQESLEQVGDE-------RVIVVAGEDWNEGVVGIVASRLVDRFSRPAIVLTT 345

Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
           +++G+  GSGRS+   D+ K++        L + GGH  AAGL +++ +     DF    
Sbjct: 346 DKNGELKGSGRSVGAVDLYKLLE--GSSQYLTRFGGHKKAAGLGLKKEHLQPFKDFINLL 403

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
           A   +P         + G L  S ++  LID+LES  PYG  NP P F   + ++   R 
Sbjct: 404 AQK-IPQEDFIDTSTVLGELPFSEIDWELIDILESFAPYGESNPMPKFFASHVEVLEKRG 462

Query: 524 VNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           V     HL MT   Q+    +AI F              +  R+ +      N +  S  
Sbjct: 463 VGEDGRHLLMTLR-QNGNIFKAIHF--------HNETDLQNDRIDIVYQPVKNIYNNSIY 513

Query: 582 CQLRVL 587
            QL + 
Sbjct: 514 IQLHIK 519


>gi|297588488|ref|ZP_06947131.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna
           ATCC 53516]
 gi|297573861|gb|EFH92582.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna
           ATCC 53516]
          Length = 580

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 157/594 (26%), Positives = 275/594 (46%), Gaps = 36/594 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+        +     +Q++ I  ++A++L+NRN++    + FLNP       DP ++ 
Sbjct: 3   KWLINNRGNNFSEV---SQRNNIHPLIAKILLNRNIT--DFQTFLNPIAENSYHDPFLMK 57

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA   I+ AI N + I I GDYD DG +S   ++  L + +   +  IP+R+ DGYG
Sbjct: 58  DMDKAVDIIINAIENDQNIRIVGDYDQDGNSSTMTLLDGLGYFTDKLSYDIPNRMTDGYG 117

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191
            + ++++K I +   LIIT D G ++ +  +YA   G+ +IV DHHQ      K     A
Sbjct: 118 ISFNIIDKCIEDNIDLIITCDNGISAIEQCEYAKQNGLKIIVTDHHQTIKHDGKEIIPNA 177

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP +         LC AGV + ++  I              +  +LL  VA+ TVC
Sbjct: 178 DAVINPQQQSCKYPFKSLCGAGVCYKLIQAINVKKG-----YGMLECENLLQYVAMGTVC 232

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D+V L   NR +V KGL       N GLK LIE   I + +   +LG++IGP INA GR+
Sbjct: 233 DIVDLKDENRYFVTKGLQEINNTDNYGLKCLIEMTGIRNGVNVYSLGFIIGPCINAAGRL 292

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             + LG  L   ++   +E  A  L  LN+ R+ +      +A   +  +  ++    ++
Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEEGFNKAVEII--ENTELINDDIL 350

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430
           +   +  H  + G++A R+KEK+ +P+  ++  E+     GSGRSI  +DI     F   
Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTKSENENILKGSGRSISEYDI--FKEFDEF 408

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             + V  GGH MA GL++E            +  ++ +          ID       ++ 
Sbjct: 409 REMFVSFGGHPMACGLSIEEDKLDEFRTKVNQ--NSKLTEEDFVKKILIDSSFYVDKIDF 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVY 549
            LI+ ++   P+G  NP P+    + ++   +++    ++      ++++T+ AI F   
Sbjct: 467 DLIEEIDRLRPFGKDNPRPILGDRDLEIIFAKMIGKNKNVLKLKLLKNNKTIDAILFSEA 526

Query: 550 GTPLGEFLMQ-------------SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  L +             +    + +  +  +N +   K  QL ++D  
Sbjct: 527 IDKYNYLLEKFGENVMSQLENNIACNANIDIIYYPEINDFNNVKNIQLNLIDLR 580


>gi|317056334|ref|YP_004104801.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus
           7]
 gi|315448603|gb|ADU22167.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus
           7]
          Length = 678

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/576 (26%), Positives = 275/576 (47%), Gaps = 26/576 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
           F+W    G+    +     +K  +  +V  +L  R +  +     F        + DP++
Sbjct: 2   FKWRI--GKPDPEKVEYFLKKTDLNRLVLEILSARGIDDEDSIVSFFT---EQELEDPMM 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA   I QA+   E I ++GDYD DG  S +++  +L     N   YIP+R   G
Sbjct: 57  IKDMDKAVETIEQAVDAYELICVYGDYDCDGITSTSILFNYLESMGANVMYYIPER-EAG 115

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + +E+   +  +LI+TVD G +S +  +     GI +++ DHHQV  E   A A+
Sbjct: 116 YGMNIAAIEELAEKDVKLIVTVDNGISSVEEAKRCRELGIKLVITDHHQVGDELPEAEAI 175

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P+R D  S    LC AGV   +   +       +    +  +    DL A+ TV D+V
Sbjct: 176 VDPHRPDCPSSFKDLCGAGVALKLCAAL-------DGGSYDAAVEQYSDLCAIGTVADIV 228

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V  G        N GL  L++++ I    I ++++G+ IGP INA GR G 
Sbjct: 229 PLKGENRTLVKAGFRYLPNTENAGLGILLDKLKIDRKRIVSDHIGFRIGPVINASGRFGS 288

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
                + ++S+D ++ E     +  LN  R+  E  +++  E  +      +    VIV+
Sbjct: 289 PLTAVKAILSEDMEDAESYVDTMITLNSQRKKCEQEIMKDIEDYI-RNDPKVLDHRVIVL 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  WH G++G++A+++ +++ +P+  IS E+ G   GS RS++G +I   +++  E  +
Sbjct: 348 AGKGWHHGVIGIVASKILDRYSKPTIIISIEDGGMARGSARSVKGLNIHTCLTYCAE--L 405

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGH  A G +++  +  +  +   +++  +            D VL  + +++ ++
Sbjct: 406 LTKFGGHECAGGFSLKEEDISKFTEKVYEYSAGLEKPA--VKTLYADKVLMPADLDVEMV 463

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTP 552
             L    P G GNP P+FA    ++  I  +    H +++F    +    A+ F    T 
Sbjct: 464 KGLSVLEPIGEGNPRPLFAVLGARVNEIIPLKDNAHTKLSFTYGRTNAY-ALIFGQDPTK 522

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
               L  ++G  + +   L +N +   +   +RV+D
Sbjct: 523 ----LCFAKGDLIDMMVELDINVFNDRESVTVRVVD 554


>gi|313633152|gb|EFS00038.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri
           FSL N1-067]
          Length = 718

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 165/529 (31%), Positives = 264/529 (49%), Gaps = 26/529 (4%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + D A  RI QAI   ++I+++GDYD DG  S+A++M+ L H   NA+ YIP+R  +GYG
Sbjct: 2   EMDVAVARIKQAIELEQQILVYGDYDADGVTSIAVLMKTLRHLGANADFYIPNRFTEGYG 61

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN +  +    +G  LIITVD G  + + + +A   G+DVIV DHH+ +     A A+++
Sbjct: 62  PNVAAFDMAKKQGIDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAVAVIH 121

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P   +       L   GV + +   +   L ++           LLDLVA+ TV D+V L
Sbjct: 122 PKHPNSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVADLVSL 170

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
              NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+G ++
Sbjct: 171 TDENRLLVQLGLRQLREGANIGLGVLAKKASLKLEEATEETIGFGLAPRLNAIGRLGPAD 230

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
             + LL+++D +E   LA ++D  N+ R+ +     + A   +  +        V+VV G
Sbjct: 231 PAADLLLTEDPEEALFLAEEIDDANKERKQIVLDTTKLAMEAIEAK---DNLGKVLVVSG 287

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + W+ GI+G++A++L   + RP+  +  +   G   GSGRSIE F + +         ++
Sbjct: 288 EGWNTGILGIVASKLVSVYSRPAIVLGIDSVTGIAKGSGRSIESFHLYQA--LDKHRDLM 345

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGH MAAGLT+   N   L    Q+ A  ++      P  KI+  +N + V ++ I 
Sbjct: 346 TAFGGHPMAAGLTLPAENLAELELKLQEEAS-LLAEEDFRPALKIEERINLADVTVSFIA 404

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551
            LE   P+G  NP P+F      L+  + +     HL+   E+++S+ TL AI F V   
Sbjct: 405 QLEKLAPFGMDNPKPIFLLEGMHLKGTKRIGADKTHLKTMLEAKESDATLDAIGFGVGDL 464

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 465 ----VEKISPSADVDVVGELSINEWNNIKKPQLRMMDVRIPHWQLFDVR 509


>gi|160879033|ref|YP_001558001.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           phytofermentans ISDg]
 gi|160427699|gb|ABX41262.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           phytofermentans ISDg]
          Length = 592

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 171/599 (28%), Positives = 290/599 (48%), Gaps = 45/599 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           +W+    +       A+  + AI  ++AR++VNR +S +   + +L+  +   M   L++
Sbjct: 4   KWMLEAKRADF---EALANRLAISPVLARIIVNRGLSEEDEMQRYLSCDLTE-MYSGLMM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              ++A   I+ A+  ++ I I  D+D DG  S   +   L        +Y PDRI +GY
Sbjct: 60  KGMEQARNLIITAVEENQLIAIGTDFDNDGILSGHSLSTALKRIGGRVVVYAPDRISEGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N  ++ +    G++LIIT D G   +DA+ YA   G+ V+V DHH+V  EE       
Sbjct: 120 GLNRRIVLEAYEAGSRLIITCDNGIAVFDAIDYAKELGMTVVVTDHHEVAFEEDENGSRT 179

Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                A  +VNP +         LC AGVV+ ++ L+Y             +L  LL+ +
Sbjct: 180 FLLPNADVVVNPKQEGCPYPFKGLCGAGVVYKLIELLYEY-----YSVPKEELYDLLEFI 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATV DV+ L+  NR  V  GL +  +  N G++ALIE        I+A ++G++IGP 
Sbjct: 235 AIATVADVMDLVSENRLIVKHGLKLLSQSKNLGIRALIEECGLEQKRISAYHIGFVIGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
            NA GR+    +   LL +  ++E + LA+ L  LN +R+ M    +EQA  ++  +  D
Sbjct: 295 FNAAGRLDTVAVALDLLDAKTTEEAKQLAVSLKKLNDSRKDMTLQGVEQAIERI--ETSD 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
           +    V+VV+    H  +VG++A RL+E++ +P+      E G   GSGRSIE +++   
Sbjct: 353 LIHDKVLVVKLRDTHESLVGIIAGRLRERYNKPALVFVDVEQGV-KGSGRSIESYNM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +L K GGH MAAGL+++  N   L     +  +  +      P+ +ID  L 
Sbjct: 410 EELLKCKDLLTKFGGHPMAAGLSLKAENLETLRARLNQ--NTTLSEEDLIPIVRIDIPLP 467

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
              +N A ++ LE   P+G GN  PVFA  + K++  R++      L++   + +   + 
Sbjct: 468 IGYLNEAFLEELEKLEPFGKGNIKPVFAEQHFKIRQARILGKNQNVLKLNIINSEGFAMD 527

Query: 543 AIAFRVYGTPLGEFLMQSRGK------------RMHVT--GHLCVNYWRGSKRCQLRVL 587
           A+ F    T   EF     GK             + +    +  +N + G++  Q+ + 
Sbjct: 528 ALYFGDI-TEFNEFAEMEYGKEEVRKMYLGQYNEVDLAFTYYPTLNEYMGNRTVQVIIQ 585


>gi|325203913|gb|ADY99366.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis M01-240355]
          Length = 566

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 171/564 (30%), Positives = 264/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R+V    +   L+  +  L+P    LT+C+ AA R+  AI   EKI+I
Sbjct: 22  GADPLIARLCASRDV---QSPAELDDKLAALLPY-QSLTNCEAAAGRLADAIERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMDAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q A  + V  D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTA--LAVYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566


>gi|237736844|ref|ZP_04567325.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420706|gb|EEO35753.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           mortiferum ATCC 9817]
          Length = 853

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/592 (26%), Positives = 288/592 (48%), Gaps = 30/592 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           RW+        N          I   +  +L NR++  +     F+N S+  +   PL+L
Sbjct: 5   RWIYKENSFSQNT------NLNIDRDILNLLYNRDIRDEEKIYKFINTSLDNIH-SPLLL 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+A  RI+QA  N E++ I+GDYDVDG  S +L    LS   +    YIP R  +GY
Sbjct: 58  KDVDRAVERILQAKENKEEVWIYGDYDVDGITSTSLCYLALSEIGITPRYYIPLR-DEGY 116

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N   M+   ++G ++IITVDCG +++  ++YA + G+++IV DHH++ +   PAYA++
Sbjct: 117 GLNKEAMDYIKSQGGKVIITVDCGISAHPEIEYANSLGLEIIVTDHHEINNGNPPAYAVI 176

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP R D+     ++   G  F+++  ++  L +        +L   LD+VA+ TV D+VP
Sbjct: 177 NPKREDNQFPFKYMAGVGTAFMLIYALFDKLEKK------EELYKYLDIVAIGTVADIVP 230

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIG 312
           L+  NR +   G+    +    G+  LI+++            ++G++I P  NA GR+ 
Sbjct: 231 LLEENRIFTKFGMEQLNKSHWLGISMLIKKIFEDYKTKKFNTYDIGFIIAPIFNAAGRLE 290

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I  D +    +  +L   N  R+ ++  +LE+A  K+  + + + + SV+V
Sbjct: 291 DAKRAVELFIEKDHRVCSEIINELLNNNTERKEIQEMILERALFKI--ENEKLFEDSVLV 348

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V  + +H G++G++A+++ +++ +P+  +    ++     S RSIEGF++  + +    +
Sbjct: 349 VAEEGFHHGVIGIVASKILDRYYKPTIIMEIKPDERIATASCRSIEGFNM--IEALNTMK 406

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            + VK GGHA AAG +++  N         ++A   +P        K+D  + A  ++  
Sbjct: 407 ELFVKYGGHAGAAGFSIKIENINEFSKRINEYAKENIPESSLIKPVKLDITIPAYKISYD 466

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549
            ID +    P+G GNP+P+FA  N ++  +R +     H        + E    + F   
Sbjct: 467 FIDKISLLEPFGFGNPSPLFALNNCEISGVRPIGKEKNHTMFNVRKDNLEIRNCVWFSSD 526

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAKK 600
                 F   +      +   L +  ++     ++ V D   P +  +  ++
Sbjct: 527 DV----FNEMASISHADIAFKLKLETFKDKYMYKMYVEDMQLPRKEENIYER 574


>gi|317050969|ref|YP_004112085.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurispirillum
           indicum S5]
 gi|316946053|gb|ADU65529.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurispirillum
           indicum S5]
          Length = 558

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 160/540 (29%), Positives = 264/540 (48%), Gaps = 26/540 (4%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
            D    FL   +  L  DP +L D  KA   +  AI  S  I+++GD+DVDG    A+++
Sbjct: 36  DDDRNLFLQADLSHL-ADPFLLRDMAKAVELLDAAIQQSLPILVYGDFDVDGTVGTAMLV 94

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG 173
           RFL       + +IP R  +GYG N + +E   ++   L+I+VDCG T+ D + +  + G
Sbjct: 95  RFLRELGARVDYFIPSRFTEGYGLNRAALE-SRSQDFHLLISVDCGITAIDEVAFLKSLG 153

Query: 174 IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP 233
             VI+ DHH   ++  PA A+V+P+R D       +C A VV  ++  + R + +     
Sbjct: 154 KQVIITDHHLPGNQLPPADAIVDPHRPDCPYPHA-ICGAAVVLKLITALRRTIGRAE--- 209

Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293
               L   L L +LATV DV+ +   NR  V +GL +   +   GL+ L E   I     
Sbjct: 210 --LSLAPYLPLASLATVADVMEIRHENRVLVKQGLRLFADKAVTGLRLLCEVAGIDPGKM 267

Query: 294 A-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE--LEMLAMKLDVLNQNRRLMESAM 350
           +   LG+ +GP +NA GR+  +     L + D+ Q      +A +LD LN+ R+ +E +M
Sbjct: 268 SVYGLGFQLGPRVNAAGRMENARDSVELFLLDEPQREQALSIARQLDDLNRQRQEVEQSM 327

Query: 351 LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI 410
           +E+A  ++  Q   + +   I+V    W+ G++G++A RLK ++ RP    S  EDG   
Sbjct: 328 VEEAREQI--QRHKLHEQRAIIVGSRGWNEGVIGIVAGRLKSRYHRPCIVYSQLEDGTLK 385

Query: 411 GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
            S RS++G D+   +        LVK GGHAMAAGL +++ N         K      P 
Sbjct: 386 ASCRSVDGIDLHHELQQC--AHHLVKFGGHAMAAGLQIQQSNLEAFRQNLLKNLSR-FPE 442

Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAH 528
            +      +D  L A  +++     +    P+G GNP P+F+  +  +          +H
Sbjct: 443 DLFKAKCTVDACLPAPLLSMDTAHAINRLEPFGNGNPEPLFSG-DFTVLDSYQCGREGSH 501

Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
            ++T +  + +  QAIAF          L  + GK++ +   L VN++RG    ++++ D
Sbjct: 502 CRLTIQDSEGKRHQAIAF-------SNNLQAAVGKQVKLCFKLRVNHFRGKDSLEMQIED 554


>gi|329118639|ref|ZP_08247343.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465374|gb|EGF11655.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 567

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 168/564 (29%), Positives = 258/564 (45%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               + AR+   R V        L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 23  GADPLTARLCAARGVVSP---GELDDKLAALLPY-QTLTNCEAAASRLADAVQKKEKILI 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L       +  +P+R   GYG  P L E    +G  L++TVD
Sbjct: 79  VADYDADGATACSVGMAGLGAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLVTVD 138

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++E+P   +VNPN+         L   GV+F 
Sbjct: 139 NGIASIAGVARAQALGLDVIVTDHH-LPADEVPNCIIVNPNQRGCGFASKSLAGVGVIFY 197

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR  N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 198 VLMALRAELRWRNYFSDGLKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 257

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL +            ++G+ +GP INA GR+ + +LG   L++    E + L
Sbjct: 258 KMRPGIRALFDVARRDWKKAQPFDMGFALGPRINAAGRLDDMSLGIACLLAPGEAEAQTL 317

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A         D Q   V     D +H G+VG++A+RLK+
Sbjct: 318 AEQLNGLNIERREIEQSMLQDALNAFPDTLPDGQTTLV--AYRDDFHQGVVGIVASRLKD 375

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 376 RFYRPAIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPNLILKFGGHAMAAGLSILE 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 436 HNIPAFQTAFEEAVREMVREEDLSQTFITDGSLAAGDITLEQAQNLAR-QVWGQGFAPPS 494

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F     ++   + +     H +   + +D    +A+ +R               + +   
Sbjct: 495 F-TDLFRVVRQQSLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 543

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +     V
Sbjct: 544 YRPVANEWRNNLELQLYIDYWEAV 567


>gi|261363775|ref|ZP_05976658.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria mucosa
           ATCC 25996]
 gi|288568354|gb|EFC89914.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria mucosa
           ATCC 25996]
          Length = 566

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R+V    +   L+  +  L+P    LT C+ AARR+  AI   EKI+I
Sbjct: 22  GADPLIARLCASRDV---QSPAELDDKLAGLLPY-QSLTHCEAAARRLADAIQRKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ +         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRDYFSDGLKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQTL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNDLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR     QL +      
Sbjct: 543 YRPVANEWRNQMELQLYIDYWEAA 566


>gi|319791975|ref|YP_004153615.1| single-strandeD-DNA-specific exonuclease recj [Variovorax paradoxus
           EPS]
 gi|315594438|gb|ADU35504.1| single-stranded-DNA-specific exonuclease RecJ [Variovorax paradoxus
           EPS]
          Length = 573

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 174/588 (29%), Positives = 267/588 (45%), Gaps = 33/588 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             +          A+ ++  +  ++AR+   R V    AKD L+  +  L+  P  L   
Sbjct: 2   KIIARDIPPRTVWAL-EQAGVHPLLARLFAARGV---MAKDELDDGLARLLL-PDTLRGT 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137
            +AA  +  A+   +++ I  DYD DGA + A+ +R L        +  +PDR+VDGYG 
Sbjct: 57  REAAVLLADAMAQDKRLCIVADYDCDGATACAVGVRGLRLLGAKHVSYLVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P + E+  + GA ++ITVD G  S + +  A  +G+ V+V DHH    E   A  LVNP
Sbjct: 117 TPPIAERVADSGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPIADVLVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255
           N+         +   GV+F VL+ +   LR            L +LL LVAL TV DVV 
Sbjct: 177 NQPGCDFESKSIAGVGVMFYVLLALRSELRARGVFDVASQPKLDALLPLVALGTVADVVK 236

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           L   NR  V +GL   R    P   A         +S  T  + G+ +GP INA GR+ +
Sbjct: 237 LDANNRRLVAQGLRRIRAGAMPAGVAALFKAAGRTASVATTFDFGFALGPRINAAGRLAD 296

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI-----QQA 368
             LG   L++DD+   + LA  LD +N+ RR +E  M +QA     +             
Sbjct: 297 MTLGIECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFATDGEGIEAPP 356

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKM 424
             I V    +H G+VG++A+R+K++F RP+F  +       + +  GSGRSI GF +   
Sbjct: 357 PAISVFDANFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDA 416

Query: 425 VSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +        G+L++ GGHAMAAG TV R +F        + A   + A   T   + DG 
Sbjct: 417 LDLVAKRHPGVLLRFGGHAMAAGCTVAREHFETFEQALAQVAGEWLAASALTRQIETDGP 476

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           +    + I L+D L     +G G   P F     ++ S R+V   HL +    Q  + + 
Sbjct: 477 IAREYMRIDLVDTLHR-EVWGQGFAPPTF-SEEVEVVSQRLVGEKHLALKLRHQ-GQPID 533

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           AI F                 ++ +   L  + W+G +R +  V  A 
Sbjct: 534 AIWFSHTE---------PLPPKVKLAFRLDADEWQGVRRLRFLVEGAE 572


>gi|310778288|ref|YP_003966621.1| exonuclease RecJ [Ilyobacter polytropus DSM 2926]
 gi|309747611|gb|ADO82273.1| exonuclease RecJ [Ilyobacter polytropus DSM 2926]
          Length = 859

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/588 (26%), Positives = 273/588 (46%), Gaps = 27/588 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           +  +W+        N +L I +       +  +L NR +  +     FL  SI  +  DP
Sbjct: 2   NNTKWIYKGDYLHENSSLPIDRD------ILNILYNRGIKDEKEINRFLYSSIEDIR-DP 54

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
           + L D D A  RI++A    E+I I+GDYDVDG  S ++    L    +N   YIP R  
Sbjct: 55  MTLADMDLAVNRILKAKEKQEEIWIYGDYDVDGITSTSMCFMALRDIGLNVRYYIPLR-D 113

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +    NEG  +IITVDCG +S + +++A   G++VI+ DHH++ +    AY
Sbjct: 114 EGYGLNKEALSYIKNEGGDVIITVDCGISSIEEIEHANKIGLNVIITDHHEINNALPSAY 173

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP R D++     L   G  F+ L  IYR +           +   LD+VA+ T+ D
Sbjct: 174 AVINPKREDNVYPFKFLAGVGTAFMFLYAIYRKMGI------GEKMHQYLDIVAIGTIAD 227

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---ITAENLGYMIGPSINAGG 309
           +VPL+  NR +   GL +     + GL+ L+  +            ++G++I P  NA G
Sbjct: 228 IVPLVEENRIFSKFGLKLLENTKHLGLRTLLGFLYPEYETKVFNTYDVGFVIAPVFNAAG 287

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++ +G  L +SD  +E   ++  L   N  R+ ++S +L+  E  +  +  D++   
Sbjct: 288 RLEDAKIGVELFVSDSKKESREISQNLMGKNNERKEIQSEILDLVEKNISEESLDMKN-- 345

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           VIVV    +H G++G++A+++ +K+ +P+  +  +E  + I         +   + +   
Sbjct: 346 VIVVASKDFHHGVIGIVASKIVDKYYKPTIIMEIKEK-ENIAVASCRSIDNFSMIDALNT 404

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              I +K GGH  AAG ++         D    +A +I+         KI+  +    ++
Sbjct: 405 MPDIFLKYGGHDGAAGFSIPADKIQEFSDRINSYAGSILDESDFQKPVKIEKEILFHKIS 464

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
              +D L    P+G GNP P+F+  N   + +R++     H+  T     +E    + F 
Sbjct: 465 YEFLDKLRLLEPFGFGNPTPIFSIKNCLFKDLRMIGKDKNHMMFTILKDGNEIKNCVWFS 524

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                   F   +  + + V   L    ++     ++ + D +P +  
Sbjct: 525 SGHN----FQEIAHMREIDVAFKLKQEIFKDRYMNKIYIEDLNPSQNE 568


>gi|291539243|emb|CBL12354.1| exonuclease RecJ [Roseburia intestinalis XB6B4]
          Length = 585

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/597 (28%), Positives = 281/597 (47%), Gaps = 43/597 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W  +           I ++  I  + AR++ NR V   +    +L   I  L  DP +L
Sbjct: 3   KWFVINKGADFA---GIAKRFGISPVTARLIRNREVMGDEAIARYLKGGIGELY-DPHLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+    +VQ I   +KI + GDYD+DG  S  ++ + ++ C  + +  IPDR+ DGY
Sbjct: 59  LDSDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L+E+    G   IIT D G  +   + +A + G+ V+V DHH++           
Sbjct: 119 GINDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A A+VNP +++      +LC A VV+ V+ ++Y             +    L+ VA
Sbjct: 179 KRSEADAIVNPKQMECTYPYKNLCGAAVVWKVIQILYEK-----CDIAVEESYDFLENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
            ATV DV+ L   NR  V +GL       NPG++ALI +  +    I++ + G+++GP I
Sbjct: 234 FATVGDVMDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + +   L + +D ++   +A +L  LN  R+ M +  +E A  +V       
Sbjct: 294 NASGRLETAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEE---GN 350

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+VV     H  + G++A R++E   +P+F ++  EDG   GSGRSIE + +    
Sbjct: 351 TGEKVLVVYLPDVHESLAGIIAGRIREACHKPTFVLTKSEDGV-KGSGRSIEAYSMY--E 407

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +  K GGH MAAGL++   N     +         +      P  KID  +  
Sbjct: 408 ELCKCQELFTKFGGHPMAAGLSLPEANVEIFREKINACCG--LTEEDFIPKIKIDIPMPV 465

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
              +I L++ L    P+G  N  P FA  N  +    VV      L++T +++  +++ A
Sbjct: 466 DYPDIPLVNELLLLEPFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISA 525

Query: 544 IAFR-------VYGTPLGE------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F         YG   GE      FL ++ G RM V  +  +N ++G++  Q+ + 
Sbjct: 526 VYFGDVEEFREYYGRKYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIK 582


>gi|317486573|ref|ZP_07945394.1| single-stranded-DNA-specific exonuclease RecJ [Bilophila
           wadsworthia 3_1_6]
 gi|316922173|gb|EFV43438.1| single-stranded-DNA-specific exonuclease RecJ [Bilophila
           wadsworthia 3_1_6]
          Length = 571

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 166/585 (28%), Positives = 263/585 (44%), Gaps = 23/585 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W      +          K  +P +VA +L  R + +      FL+P +R L P P  
Sbjct: 2   KIWKFRNQPDKGPCPAGWADKLGVPQVVADLLWQRGLETSAQMDSFLSPGLRHLAP-PDC 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                +A   + Q I     ++I+GDYDVDG     L+++ L    V + +++PDR  +G
Sbjct: 61  WPGMQEAVDALEQGIREGRNVLIWGDYDVDGITGATLILQTLRFHDVPSTVHLPDRRKEG 120

Query: 135 YGPNPSLMEK-FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YG N   +E+    EG  +++TVDCG +   A++ A   G  V+V DHH    E  PA+A
Sbjct: 121 YGLNIPEIERLAAEEGPGILLTVDCGISDVKAVERARELGFMVVVSDHHMPPEELPPAHA 180

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           + NP   +D     HL   GV F ++  +   L  +       D+  +LDLVAL T+ D+
Sbjct: 181 ITNPRLSEDN-PCPHLAGVGVAFFLMAALNGKL--EAMSGKRMDMRQVLDLVALGTLADM 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRI 311
           V L G NR  V  GL+       PGL  L      S    + A  + + + P INA GR+
Sbjct: 238 VSLTGQNRILVKNGLLKIAEAKRPGLAELKGASGFSPVAALGAGQVVFNLAPRINAAGRL 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G   L   +L++    E   LA  L  LN  RR  E  + ++A  +       +      
Sbjct: 298 GSPTLAHDMLLTPSHDEAAKLAQTLTSLNDERRSEEDRIYKEALEQAEANPKRLG----F 353

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ G  WH G++G++A+R+ E + RP   +  + +    GSGRS+  FD+   ++     
Sbjct: 354 VLYGKDWHQGVIGIVASRIVEVYYRPVLILCSDGESL-KGSGRSVPEFDLHAGLTRC--A 410

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NI 490
            +L+  GGH  AAGL +       L + F       +     TP  KID  +  S   + 
Sbjct: 411 DMLLGFGGHRQAAGLRIAPGRLDELRERFDAVIREELGEAPLTPSLKIDAEMPFSQASDF 470

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF-ESQDSETLQAIAFR 547
            ++  LE   P+G GNP P+FA    +++  +       H+ +   E     TLQA A+R
Sbjct: 471 TVLKGLELLQPFGIGNPEPIFASLPLRVKKRKAFGHSREHISLEVTEEGSGITLQAKAWR 530

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +     +G+R+ +     +N + G    +LRV D   +
Sbjct: 531 QAD----QIPESIQGQRIRLAYTPGINAYNGIASVELRVRDWEVL 571


>gi|313637726|gb|EFS03092.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri
           FSL S4-171]
          Length = 718

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 165/529 (31%), Positives = 264/529 (49%), Gaps = 26/529 (4%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + D A  RI QAI   ++I+++GDYD DG  S+A++M+ L H   NA+ YIP+R  +GYG
Sbjct: 2   EMDVAVARIKQAIELEQQILVYGDYDADGVTSIAVLMKTLRHLGANADFYIPNRFTEGYG 61

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           PN +  +    +G  LIITVD G  + + +  A   G+DVIV DHH+ +     A A+++
Sbjct: 62  PNVAAFDMAKKQGIDLIITVDNGIAALEVMTRAKEIGLDVIVTDHHEPREVMPEAVAVIH 121

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P   +       L   GV + +   +   L ++           LLDLVA+ TV D+V L
Sbjct: 122 PKHPNSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVADLVSL 170

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
              NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+G ++
Sbjct: 171 TDENRLLVQLGLRQLREGANIGLGVLAKKASLKLEEATEETIGFGLAPRLNAIGRLGPAD 230

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
             + LL+++D +E   LA ++D  N+ R+ +     + A   +  +        V+VV G
Sbjct: 231 PAADLLLTEDPEEALFLAEEIDDANKERKQIVLDTTKLAMEAIEAK---DNLGKVLVVSG 287

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           + W+ GI+G++A++L   + RP+  +  +   G   GSGRSIE F + +         ++
Sbjct: 288 EGWNTGILGIVASKLVSVYSRPAIVLGIDSVTGIAKGSGRSIESFHLYQA--LDKHRDLM 345

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGH MAAGLT+   N   L    Q+ A  ++      P  KI+  +N + V+++ I 
Sbjct: 346 TAFGGHPMAAGLTLPAENLAELELKLQEEAS-LLAEEDFRPALKIEERINLADVSVSFIA 404

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551
            LE   P+G  NP P+F      L+  + +     HL+   E+++S+ TL AI F V   
Sbjct: 405 QLEKLAPFGMDNPKPIFLLEGMHLKGTKRIGADKTHLKTMLETKESDATLDAIGFGVGDL 464

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                   S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 465 ----VEKISPSADVDVVGELSINEWNNIKKPQLRMMDVRIPHWQLFDVR 509


>gi|194098157|ref|YP_002001205.1| RecJ [Neisseria gonorrhoeae NCCP11945]
 gi|239998609|ref|ZP_04718533.1| RecJ [Neisseria gonorrhoeae 35/02]
 gi|240016170|ref|ZP_04722710.1| RecJ [Neisseria gonorrhoeae FA6140]
 gi|240080314|ref|ZP_04724857.1| RecJ [Neisseria gonorrhoeae FA19]
 gi|240115265|ref|ZP_04729327.1| RecJ [Neisseria gonorrhoeae PID18]
 gi|240117552|ref|ZP_04731614.1| RecJ [Neisseria gonorrhoeae PID1]
 gi|240123107|ref|ZP_04736063.1| RecJ [Neisseria gonorrhoeae PID332]
 gi|240125358|ref|ZP_04738244.1| RecJ [Neisseria gonorrhoeae SK-92-679]
 gi|240127810|ref|ZP_04740471.1| RecJ [Neisseria gonorrhoeae SK-93-1035]
 gi|254493328|ref|ZP_05106499.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           1291]
 gi|260440918|ref|ZP_05794734.1| RecJ [Neisseria gonorrhoeae DGI2]
 gi|268594466|ref|ZP_06128633.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           35/02]
 gi|268596462|ref|ZP_06130629.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           FA19]
 gi|268600947|ref|ZP_06135114.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           PID18]
 gi|268603254|ref|ZP_06137421.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           PID1]
 gi|268681734|ref|ZP_06148596.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           PID332]
 gi|268683961|ref|ZP_06150823.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686206|ref|ZP_06153068.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044241|ref|ZP_06569950.1| single-stranded-DNA-specific exonuclease recJ [Neisseria
           gonorrhoeae DGI2]
 gi|293399438|ref|ZP_06643591.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           gonorrhoeae F62]
 gi|193933447|gb|ACF29271.1| RecJ [Neisseria gonorrhoeae NCCP11945]
 gi|226512368|gb|EEH61713.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           1291]
 gi|268547855|gb|EEZ43273.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           35/02]
 gi|268550250|gb|EEZ45269.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           FA19]
 gi|268585078|gb|EEZ49754.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           PID18]
 gi|268587385|gb|EEZ52061.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           PID1]
 gi|268622018|gb|EEZ54418.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           PID332]
 gi|268624245|gb|EEZ56645.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626490|gb|EEZ58890.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011135|gb|EFE03131.1| single-stranded-DNA-specific exonuclease recJ [Neisseria
           gonorrhoeae DGI2]
 gi|291610007|gb|EFF39129.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           gonorrhoeae F62]
 gi|317163881|gb|ADV07422.1| RecJ [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 566

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGIKEPNLGGLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML  A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AARLNNLNIERREIEQSMLRDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  +  DG L A  + +     L +   +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPACDITLEQAQNL-ACHVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR +   QL +      
Sbjct: 543 YRPVANEWRDNLELQLYIDYWEAA 566


>gi|240143727|ref|ZP_04742328.1| single-stranded-DNA-specific exonuclease RecJ [Roseburia
           intestinalis L1-82]
 gi|257204286|gb|EEV02571.1| single-stranded-DNA-specific exonuclease RecJ [Roseburia
           intestinalis L1-82]
          Length = 585

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 167/597 (27%), Positives = 280/597 (46%), Gaps = 43/597 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W  +           I ++  I  + AR++ NR V   +    +L   I  L  DP +L
Sbjct: 3   KWFVINKGADFA---GIAKRFGISPVTARLIRNREVMGDEAIARYLKGGIGELY-DPHLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+    +VQ I   +KI + GDYD+DG  S  ++ + ++ C  + +  IPDR+ DGY
Sbjct: 59  LDSDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186
           G N  L+E+    G   IIT D G  +   + +A + G+ V+V DHH++           
Sbjct: 119 GINDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHY 178

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A A+VNP +++      +LC A V + V+ ++Y             +    L+ VA
Sbjct: 179 KRSEADAIVNPKQMECTYPYKNLCGAAVAWKVIQILYEK-----CDIAVEESYDFLENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
            ATV DV+ L   NR  V +GL       NPG++ALI +  +    I++ + G+++GP I
Sbjct: 234 FATVGDVMDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + +   L + +D ++   +A +L  LN  R+ M +  +E A  +V       
Sbjct: 294 NASGRLETAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEE---GN 350

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+VV     H  + G++A R++E   +P+F ++  EDG   GSGRSIE + +    
Sbjct: 351 TGEKVLVVYLPDVHESLAGIIAGRIREACHKPTFVLTKSEDGV-KGSGRSIEAYSMY--E 407

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                + +  K GGH MAAGL++   N     +         +      P  KID  +  
Sbjct: 408 ELCKCQELFTKFGGHPMAAGLSLPEANVEIFREKINACCG--LTEEDFIPKIKIDIPMPV 465

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
              +I L++ L    P+G  N  P FA  N  +    VV      L++T +++  +++ A
Sbjct: 466 DYPDIPLVNELLLLEPFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISA 525

Query: 544 IAFR-------VYGTPLGE------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + F         YG   GE      FL ++ G RM V  +  +N ++G++  Q+ + 
Sbjct: 526 VYFGDVEEFREYYGRKYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIK 582


>gi|222100103|ref|YP_002534671.1| Single stranded DNA-specific exonuclease [Thermotoga neapolitana
           DSM 4359]
 gi|221572493|gb|ACM23305.1| Single stranded DNA-specific exonuclease [Thermotoga neapolitana
           DSM 4359]
          Length = 958

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 157/557 (28%), Positives = 265/557 (47%), Gaps = 22/557 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILT 76
           W         +    I+Q+  + +I ARVLVNR +  + A + FL         DP +  
Sbjct: 17  WEL--SHPDEHAVKRISQRFDLSEIAARVLVNRGIDTEEAARSFLFTD-ETCQHDPFLFK 73

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +KA   ++Q     + ++I GDYDVDG  S  ++  FL       ++YIP RI +GYG
Sbjct: 74  DMEKAVETLLQVRSEGQLVLIHGDYDVDGITSAVVLKEFLEENGWKVDVYIPHRIEEGYG 133

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                +  F   G   ++TVDCG T+ +++  A   G+ VIV DHH+V  +  PA A+VN
Sbjct: 134 VQKENVLSFKEMGVSCLVTVDCGITAVESIDLAKRLGMRVIVTDHHEVNGDIPPADAVVN 193

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P    +      L   GV + ++  + ++L+         D+   L+LVAL TV D+V L
Sbjct: 194 PKVPGEDYPFRDLAGVGVTYKLVQALAQVLK-------YPDVEKYLELVALGTVADMVSL 246

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
           +  NR +V KG+ +  +    GLK  +        +T+ ++ Y I P +NA GR+G +  
Sbjct: 247 LDENRYFVKKGIELLMKTERLGLKK-LLEKLGLKKLTSHDISYKIAPRLNAAGRMGSATD 305

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL   D    E +  +L  LN  RR +E  + ++A  K+  + +D+ +  +IVV G+
Sbjct: 306 AFVLLTMKDPARTEGVVERLMELNNERRRIERQIYKEAVEKI--EANDLWKDPIIVVAGE 363

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++G++AA+L  ++ +P   +S  ++    GS RS  G+DI    S  V E I  +
Sbjct: 364 NWHVGVIGIVAAKLANRYEKPVAVVSLSDE-YAKGSIRSYNGYDIMNAFSGDVLE-IFDE 421

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH+ AAG ++ + +     ++ +  A  +           +D  ++ + V+   I+ +
Sbjct: 422 IGGHSSAAGFSLRKEHLESFKEYMKNVALEMKDEK-----VMVDAEVSLNDVDERFIEDI 476

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGE 555
           +   P+G GNP PV  F N  ++ I      +  +    +D    L+ I +         
Sbjct: 477 QLLMPFGQGNPEPVLLFSNLLIEKIHFFGEDNSNVFLHLKDGERKLEVIGYNFKSLSNSF 536

Query: 556 FLMQSRGKRMHVTGHLC 572
             +     R  V  +L 
Sbjct: 537 SALPVAPTRGSVVVNLR 553


>gi|148244741|ref|YP_001219435.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326568|dbj|BAF61711.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 572

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 157/570 (27%), Positives = 252/570 (44%), Gaps = 34/570 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP  + ++   R ++    +  L+ ++  L+    +  D   A   + QA+ N ++I+I
Sbjct: 17  DIPIFLKKIYAARGIN----ESHLSLNLSRLLKPNFLQLDI--ALVLLEQALLNQKRILI 70

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155
            GD+D DGA +  + ++ L        +  +P+R   GYG +  ++   I  +   LIIT
Sbjct: 71  VGDFDCDGATASVVAVKSLRMMGAKYVDFLVPNRFEHGYGLSEEIVSLAIQEKQPDLIIT 130

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G +S+D ++ A   GI VIV DHH        A A++NPN  D      +L   GV 
Sbjct: 131 VDNGISSFDGIKLAKLSGIMVIVTDHHLPNENLPNADAIINPNLKDCEFLSKNLAGVGVC 190

Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           F +   +   L + +          DL ++LDLVAL TV DVV     NR  V +G+   
Sbjct: 191 FYLFSALKTYLSESDYFIHQKIVPPDLRNVLDLVALGTVADVVKFDQNNRILVDQGIKRI 250

Query: 272 RRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           ++Q         L      SS + A +L + I P +NA GR+ +   G R L++DD  + 
Sbjct: 251 QQQKCSPGILALLEISSRPSSTLCASDLAFSIAPRLNAAGRLSDIACGIRCLLTDDINDA 310

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI------QQASVIVVEGDRWHPGIV 383
              A +L+  NQ R+  ++ M +QA+A V  Q               I +    WH GIV
Sbjct: 311 RRYAQELERFNQQRKQEQARMQDQAQAIVDMQELSFTQKDMGHDRFAISLFEPSWHEGIV 370

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHA 441
           G++A +LKE +  P    +        GS RSI    +  ++     +    +VK GGHA
Sbjct: 371 GIVAGKLKESYHCPVAIFAQSG-NYLKGSIRSIPSVHVKDLLDLVDRQNPDLIVKFGGHA 429

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
           MAAGL+++  NF      F       +   I+      DG L    +++    +L   GP
Sbjct: 430 MAAGLSIKSENFSNFKQVFSDAIQIHLDNQISKVNLLTDGELEVFELSLNNAQLLVDVGP 489

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQS 560
           +G G   P+F     ++   +VV   HL+   +   +++    IAF        + L   
Sbjct: 490 WGQGFDEPIFYGK-FEIIEQKVVGKKHLKCRLKFKGNTKVFDGIAFFQPLLEFVQVL--- 545

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     L +N WRGS   QL ++   
Sbjct: 546 ------AVYKLSINSWRGSTSLQLIIVQIK 569


>gi|78184730|ref|YP_377165.1| RecJ exonuclease [Synechococcus sp. CC9902]
 gi|78169024|gb|ABB26121.1| exonuclease RecJ [Synechococcus sp. CC9902]
          Length = 632

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 165/541 (30%), Positives = 264/541 (48%), Gaps = 20/541 (3%)

Query: 53  SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112
           S++ AK FL P+   L    L   D  KA  R+V+A  N+E + I GDYD DG  S AL+
Sbjct: 41  SVEEAKQFLIPT--SLPEAELHFPDLKKATNRLVEACQNNETVAICGDYDADGMTSTALL 98

Query: 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ 172
           +R L          IP R+ +GYG NPS++++   +G ++++TVD G  +  AL+ A + 
Sbjct: 99  LRALGPLGAAPRAAIPSRMEEGYGLNPSMVDRQHRDGVKILVTVDNGVAASAALRRAADL 158

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G++VIV DHH +  +  P  AL++P    D S    L   G+ +++   +   L Q   +
Sbjct: 159 GMEVIVTDHHTIPDKPAPMTALIHPATTPDGSPYRGLAGVGLAYVLARAVAEQLNQPEAI 218

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                     DL  + TV D+ PLIG NRA++++GL    R    GL+AL         P
Sbjct: 219 CSAR------DLFCVGTVADMAPLIGANRAWLLEGLNQLHRTECFGLQALQRLAGLGEHP 272

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           +TA+++G+ + P INA GR+GE  L   LL +++      LA + D  N+ RR +  A+ 
Sbjct: 273 LTADDIGFQLAPRINAVGRLGEPRLVVELLTAEEPTTAMALARRCDDFNRQRRDLCDAIE 332

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
            +A A V     D Q  S +++    WH G++G++AARL E++ RP+  ++ + +G    
Sbjct: 333 AEAVALVEADSSD-QLPSFLLLAQSHWHHGVIGIVAARLVERYHRPAALLAGDGEGLMRA 391

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S RS  GF + + ++      +L + GGH  A G TV   N   L +     A + +   
Sbjct: 392 SVRSPRGFAVDQALNHCAT--LLERFGGHPAAGGFTVRAENVHALHELLCDQADSWLKQQ 449

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
                 + D +L    VN  L   L+S  P+G G+  P+F   +  ++  R +   HL +
Sbjct: 450 GQGLPIQPDALLRLDEVNWDLWKSLQSLAPFGIGHEVPLFWSRDCTVEERRDLKGGHLAL 509

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                 +E  +AIA+R                +  V   + VN W+G +R QL +     
Sbjct: 510 RLRQAKTER-RAIAWRWD-------PASHVPDQCDVAYRISVNRWQGEQRLQLELKAIRT 561

Query: 592 V 592
            
Sbjct: 562 H 562


>gi|103488491|ref|YP_618052.1| single-stranded-DNA-specific exonuclease RecJ [Sphingopyxis
           alaskensis RB2256]
 gi|98978568|gb|ABF54719.1| single-stranded-DNA-specific exonuclease RecJ [Sphingopyxis
           alaskensis RB2256]
          Length = 588

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 235/597 (39%), Positives = 334/597 (55%), Gaps = 14/597 (2%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
             +A LG+ CSI+G  W        +       +  A  D+V ++L+ R V+ D      
Sbjct: 1   MSEAALGITCSIAGQSWRWRRASADMA-----AENLAPDDLVTQLLLARGVARDDLDRQR 55

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
            P++R  MPDP +  D D AA R+  A+   E + IFGDYDVDGA S AL++R L     
Sbjct: 56  TPTLRGFMPDPSLFRDMDAAAARLADAVERREAVTIFGDYDVDGATSAALLVRLLRALGT 115

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
               YIPDR+++GYGP+ + + K    G++LI+TVDCG+ +++A+  A   G++VIV+DH
Sbjct: 116 TVGAYIPDRLMEGYGPSGAALVKIGEAGSKLIVTVDCGAQAFEAIAEANAAGVEVIVVDH 175

Query: 182 HQVKSEEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNF 236
           HQ  +    A ALVNPNRLD+       G+L A GV FL+   + R LR           
Sbjct: 176 HQCATSLPAALALVNPNRLDESPDAAVHGNLAAVGVAFLLGAALLRTLRARGFFAGREEP 235

Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN 296
            L+ LLDLVAL TV DV  L G NRA V +GL V  R+GN GL AL++   ++ P  A +
Sbjct: 236 ALIELLDLVALGTVADVARLTGFNRALVTQGLKVMARRGNIGLAALMDAARLTRPPGASD 295

Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356
           +G+ +GP INAGGR+G+S+LG RLL +DD QE   +A +L  LN+ RR +E+A+L++A  
Sbjct: 296 MGFALGPRINAGGRVGKSDLGVRLLTTDDPQEAADIAQQLCRLNEERRTIEAAVLDEAL- 354

Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI 416
                      A V +V G+ WHPG++G++A RLKE+  RP+  I+ + DG G GSGRSI
Sbjct: 355 ---AASAACGNAPVAIVAGEGWHPGVIGIVAGRLKERLHRPAIVIAVDADGIGKGSGRSI 411

Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
            G D+G  +  A E G+LV GGGHAMAAGLTV       L  F        V        
Sbjct: 412 SGVDLGAAILAAKETGLLVAGGGHAMAAGLTVAADRVDALGAFLSDRLAADVERASGERA 471

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536
             ID VL    ++    D +ESAGPYGAG P P  A    ++    +V   H+++     
Sbjct: 472 LLIDAVLAPRGISPLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGTDHVRLIVAGD 531

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           D    +A+AFR   T LG+ L+ +RG+++ + G    + W      +L + DA+  +
Sbjct: 532 DGARFKAVAFRSAETVLGQTLLGARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD 588


>gi|82701773|ref|YP_411339.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosospira
           multiformis ATCC 25196]
 gi|82409838|gb|ABB73947.1| exonuclease RecJ [Nitrosospira multiformis ATCC 25196]
          Length = 613

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 163/608 (26%), Positives = 252/608 (41%), Gaps = 65/608 (10%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           +H    ++ARV   R +        L      L+P    L +    A+ +  AI   +++
Sbjct: 19  RHGFHPVLARVYSARGI---EEPGQLEIDWSRLIP-FARLKNATAMAQFLATAIALRKRL 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN--EGAQLI 153
           +I  DYD DGA + A+ +R L       +  +P+R   GYG  P ++           ++
Sbjct: 75  LIVADYDSDGATACAVGIRALRKFGAQVDYLVPNRFEYGYGLTPEIVRVAAAGVHRPDIL 134

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           ITVD G  S + +  A   G+ V+V DHH        A  +VNPN+        HL   G
Sbjct: 135 ITVDNGIASVEGVAEANRLGMQVLVTDHHLPGDTLPEAAVIVNPNQPGCDFPSKHLSGVG 194

Query: 214 VVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
           V+F V++ +   LR            +L SLLDLVAL TV DVV L   NR  V +GL  
Sbjct: 195 VMFYVMLALRAELRAKGMFASPQQEPNLGSLLDLVALGTVADVVKLDDNNRLLVQQGLKR 254

Query: 271 ARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            R+          +       S  +   LG+MIGP +NA GR+ + +LG   LI+DD   
Sbjct: 255 IRKGSGCAGINALINIACRNFSQTSTYELGFMIGPRLNAAGRLDDMSLGIECLITDDPPR 314

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKV------------------------------ 358
              LA++LD  N+ R+ +ES M + A   +                              
Sbjct: 315 AAQLALQLDTFNRKRQEIESHMRDSALNMLENIFSGSSGLQDSPTLRPSDMPQRSGVFRS 374

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
                +   A  + +    WH G++G+LA+R+K+KF RP    +     +  GSGRSI G
Sbjct: 375 HDSPQEGTSAYALTLFDPGWHQGVIGILASRIKDKFHRPVITFAPGGQDELKGSGRSIPG 434

Query: 419 FDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
           F +   +        G+L+K GGH+ AAGLT+   +F +    F++ A  ++       V
Sbjct: 435 FHLRDALDLVSKRYPGLLLKFGGHSAAAGLTIRTCDFEKFRAAFEQTARELLGPADLKRV 494

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES- 535
            + DG L+ S + + L + L     +G G P P F      ++  RVV   HL++     
Sbjct: 495 IETDGDLDESEITLELAEQLVR-QVWGQGFPQPAFRSR-FHVEDQRVVGQKHLKLKLRKA 552

Query: 536 ----QDSET------LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
                ++          AI F   G              +     L VN ++     Q  
Sbjct: 553 RPAAGNNPPEKPVLLYDAILFLQDG---------PLPGVIDAVYRLQVNDFKSDVSLQFI 603

Query: 586 VLDASPVE 593
           +   S   
Sbjct: 604 LEHWSEAT 611


>gi|269303438|gb|ACZ33538.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           pneumoniae LPCoLN]
          Length = 588

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 159/584 (27%), Positives = 269/584 (46%), Gaps = 13/584 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
             S +G  W     +E       I ++  +P  VA++ ++R   +I     FL   +  L
Sbjct: 6   NASATGLLW--AHPKEDPAFLGMIIKEFHLPPTVAQIFISRGFQTIQEIHKFLYSHLSSL 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DP +  D  KA  R++ A    E +MI+GD DVDG   VAL++ FL    V+ + +  
Sbjct: 64  Y-DPGLFLDMSKAVERLLLARDRKEHVMIYGDSDVDGMTGVALLVEFLRDIDVHVSYFFL 122

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
             I+  +G   +L+ K   EG  L+ITVDCG T+   +   T QGIDVI+ DHH    + 
Sbjct: 123 GAILKQHGETSTLIAKLKEEGITLLITVDCGITAGKEVSDITRQGIDVIITDHHMPTGKI 182

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLLDLVAL 247
               A +NP   D       L   GV F +   +   L   N VP     L  LLDLV L
Sbjct: 183 PHCVATLNPKLRDHTYPNRELTGVGVAFKLARGVLNALISRNLVPKSQGSLKKLLDLVTL 242

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306
            T+ DV  L+G NR  V  G+    R    GL  L        S +++ ++   I P +N
Sbjct: 243 GTITDVGVLLGENRVMVRYGIKEIARGARLGLNKLCALCGVEKSEVSSTDIVLKIAPKLN 302

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           + GR+ +   G  LL++ D + ++ L M+LD +N+ R+ +E+ + +    ++L    +I 
Sbjct: 303 SLGRLDDPAKGVELLLTQDDERVDALIMELDNINKERQRIEADVFQDV-QEILNSNPEIL 361

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
             + IV+    WH  ++ +++ARL + + +P   I+ +  G G GS R+I  F +  ++ 
Sbjct: 362 NQAAIVLSSTAWHARVIPIISARLAKTYNKPVVIIAIQG-GIGKGSARTIGSFPLLGVLK 420

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                 +L+  GGH  AAG+ ++          F    ++ +    T P  +ID   +  
Sbjct: 421 KC--SSLLLSYGGHDFAAGVIMKEDKVEDFKKKFVHLVNSSLKKGDTLPHLEIDAYADFD 478

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
           A++  L+  +E   P+G GN  P+F     +++  +V+   HL++    ++   L+ +AF
Sbjct: 479 AIDYDLLASMELFEPFGKGNLMPIFYSKVRQVRYPKVLPGNHLKLYLSQKE-RNLEGVAF 537

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +      + L       + +     ++   GS    L V D  
Sbjct: 538 GLGRH--ADALKARWHYPLEIAYTPRLSQTSGSGVIHLLVRDFR 579


>gi|269122877|ref|YP_003305454.1| single-stranded-DNA-specific exonuclease RecJ [Streptobacillus
           moniliformis DSM 12112]
 gi|268314203|gb|ACZ00577.1| single-stranded-DNA-specific exonuclease RecJ [Streptobacillus
           moniliformis DSM 12112]
          Length = 883

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 163/582 (28%), Positives = 275/582 (47%), Gaps = 28/582 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W+    +  +           I + +  +L +R +       +F+NPS+  L  DPL L
Sbjct: 4   KWILSETKSKLTNF-----DLPIDNNILNILASRGIVDEKDIVNFINPSLENL-EDPLKL 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134
            D   AA  I+ AI   + I I+GDYDVDG  S +L+          N + YIP R  +G
Sbjct: 58  KDLGLAASYILDAIKEYKNICIYGDYDVDGITSTSLLYLAFKKIGAKNIDYYIPLR-NEG 116

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAY 192
           YG N   +++  N+G  LIITVDCG +SY  +++  +  +  I+ DHH +    +   A 
Sbjct: 117 YGLNKDAIQEIKNKGTDLIITVDCGISSYHDVEFINSLDMKAIITDHHDIPSDKKLPRAL 176

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A +NP RLD+     ++   GV FL+   ++R L    +      + S LD+ +L T+ D
Sbjct: 177 ACINPKRLDNEYSFPNIAGVGVAFLLAYELFRRLGIKEE------IYSYLDIASLGTIAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLK-ALIERVNISSPITAENLGYMIGPSINAGGRI 311
           ++P+I  NR  V  GL   +   N GL+  L +       +T  ++ + I P  NA GR+
Sbjct: 231 IMPIIKENRIIVKYGLEKLKNSSNLGLRTILNKLNLKDKELTTGDISFKIAPVFNAAGRL 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++ LG +LLISD+  E+ +LA  L   N  R+ ++  ++     ++  +  DI    ++
Sbjct: 291 ADAKLGVKLLISDNQNEINILADNLISNNIYRKKIQDEIITSVLDELREK--DISNKYIL 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +     +H GI+G++A+++ E + +P   +    E+G  + S RS+EGF+I K    +  
Sbjct: 349 ISHSPNYHHGIIGIVASKVLETYYKPCIIMEENLEEGIAVASCRSVEGFNITKA--LSYV 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L+K GGHA AAG T++  N     +  + +A   +  +  T   KID  + A  ++ 
Sbjct: 407 SNLLIKFGGHANAAGFTIKLENIDIFKEKIEAYAKEQLENIKLTKNIKIDMKIPAQKISY 466

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
             I  L    P+G GNP P+    N  + + + V     HL+   + +      AI F  
Sbjct: 467 EFIQSLNLLKPFGFGNPTPLLMSENCIIHNPKTVGSNEQHLKFDIDQKGFSVKNAIWFN- 525

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            G+ L E           V   L  N ++      + + D  
Sbjct: 526 GGSNLQELRKNHI--FYDVVFKLETNEYKDRFYPSIMIEDMK 565


>gi|285018126|ref|YP_003375837.1| single-stranded-DNA-specific exonuclease [Xanthomonas albilineans
           GPE PC73]
 gi|283473344|emb|CBA15849.1| probable single-stranded-dna-specific exonuclease protein
           [Xanthomonas albilineans]
          Length = 578

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 170/559 (30%), Positives = 267/559 (47%), Gaps = 24/559 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ RV   R  + D       P++  L+P P  L+  D A   + +AI   ++I++ GD
Sbjct: 25  PLLRRVYAARG-AHDTILA--QPTLAQLLP-PDTLSGIDAAVALLAEAIMAEQRILVVGD 80

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L           +P+R+V GYG +P+L+ +       L++TVD G
Sbjct: 81  FDCDGATACAVAVRGLRLLGASQVLHAVPNRMVHGYGLSPALVAELAPLQPDLLVTVDHG 140

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A   G  V+V DHH        A  +V+PN   D      L   GV+F VL
Sbjct: 141 IACHAGIAAAKALGWRVLVTDHHLPGRTLPVADVIVDPNLAGDAFPSKMLAGVGVIFYVL 200

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276
           + + R LRQ          DL  LLDLVA+ TV D+VPL   NRA V  GL   +R    
Sbjct: 201 LALRRHLRQCGAFAATAVPDLGMLLDLVAVGTVADLVPLDANNRALVSAGLRRLQRGEGC 260

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALIE        ++A ++G+ + P +NA GR+ +  LG  LL+ ++ Q+   +A  
Sbjct: 261 LGLRALIEVSGRDPARLSASDIGFALAPRLNAAGRLEDMALGIALLLCEEPQQAHAIAAT 320

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AEA V         Q    + +   +WHPG++GL+A+++K++
Sbjct: 321 LEQINAERRAVQQQMTDAAEAVVAQAMLAAPEQPPVAVCLFDPQWHPGVIGLVASKMKDR 380

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449
             RP  A +  E G     GS RSI GF I   ++   A   G++ K GGHAMAAGL++ 
Sbjct: 381 LHRPVIAFAPAEPGSDQLRGSARSIPGFHIRDAMAAVEARLPGLMDKFGGHAMAAGLSLR 440

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           +         F ++A + +   +       DG L    ++    + L   GP+G G P P
Sbjct: 441 QAALAEFEQAFCEYARSSLDPQLLHAELHSDGALEPHELDHRHAEALRLGGPWGQGFPEP 500

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL+++         L AI F  +             +R+HV 
Sbjct: 501 LFDGE-FEVLQWRVLKERHLKLSLRCAGRRAPLNAIYFNGWRG-------SEPARRVHVA 552

Query: 569 GHLCVNYWRGSKRCQLRVL 587
             L  + + G    QL V 
Sbjct: 553 YRLVADDYLGGDAVQLVVE 571


>gi|304440365|ref|ZP_07400254.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371117|gb|EFM24734.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 578

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 164/595 (27%), Positives = 271/595 (45%), Gaps = 39/595 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW+    +E       +     I    A +L  R + + + A+ FLN     L   PL +
Sbjct: 3   RWILKGNKENTLDIEKL----NITKTTANLLSKRGIVTNEEAEHFLNIDYDDL-ETPLKM 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A   ++ A  + + I I GDYDVDG  S  ++++ L    +N    IP R  +GY
Sbjct: 58  RDMIIAGNIVLSAKSSGKNIAIVGDYDVDGVMSTVILLKGLQTLGMNPIYRIPAR-EEGY 116

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191
           G N +++++   +   LIIT D G  + + ++YA + G+DVIV DHH+V   +       
Sbjct: 117 GINNNIVDELKEKDVSLIITCDNGIAASETVKYAKSLGVDVIVTDHHEVPKIDGKDSIPA 176

Query: 192 -YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
             A++NP R D       LC AGV F ++  +Y+I   D +        +LL  VA+AT+
Sbjct: 177 ADAVLNPKRSDCDYPFKELCGAGVSFKLISYLYKIQGIDEEKE-----KALLPYVAVATI 231

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           CD++ L+G NR +V  GL +       G   +++       +    +G++IGP IN+ GR
Sbjct: 232 CDMMNLVGENRIFVKYGLEILNSSTISGFDDIVKLSGFQKELDVSAIGFLIGPMINSAGR 291

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I  +++G  L +SD   +   +   L  LN  R+       ++A   + T     +   V
Sbjct: 292 IETADIGVELFMSDSITKRTEIVELLKKLNTTRQSYTEEGFKKAIDFIETHEMQRK-FPV 350

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +VV  +  HP + G++A R+KEK+ RP+  +S     +  GSGRSIE +D+      +  
Sbjct: 351 LVVLDEDLHPAVAGIVAGRIKEKYYRPTIVLS--GKDELKGSGRSIEAYDM--FTKVSEI 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +  L   GGH MA GLT++R N            ++ +          +D  L    +N 
Sbjct: 407 KSYLTAFGGHQMACGLTIQRENLRDFVKDLNN--NSNLTREDLVKTIYLDDSLTLRDINF 464

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546
              D +    P+G GN +P+F F N K+  + V+      L+ TF   ++  ++ I F  
Sbjct: 465 DFYDEIMRLKPFGKGNEDPIFGFKNLKIVRLDVLGKNKNVLKFTFTDGEN-YVEGIYFQT 523

Query: 547 ----------RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                     +  G  L   L   +   + V   + VN + G+   QL +    P
Sbjct: 524 FDNFKKLMSSKYDGEELNYILQNKKELFIDVVASVDVNKFMGNTTLQLSIKSVRP 578


>gi|332703250|ref|ZP_08423338.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553399|gb|EGJ50443.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 574

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 177/581 (30%), Positives = 277/581 (47%), Gaps = 23/581 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            RW+     +      +   +  +  ++A +L  R + ++     FL+P +R L   P  
Sbjct: 13  RRWIFRHSDQAPAETESWAHELGVSPLLAALLWQRGLRTLRDMDVFLSPGLRHLAK-PGD 71

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
               D AAR + Q +     + ++GDYDVDG  + AL+   L+        Y+P+R+ +G
Sbjct: 72  FPGLDDAARVLAQGLEQGLPMAVWGDYDVDGVTATALVTDVLARRGFAVRHYLPNRMEEG 131

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E+   EG +L++TVDCG TS   +  A   G+ V+V DHH   SE   A+ +
Sbjct: 132 YGLNLQGIEQLAAEGVRLLLTVDCGITSTVEIARARELGMTVVVTDHHLPGSELPAAHGM 191

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            NP           L   GV FL++  + R+L          D+  +LDLVAL T+ DVV
Sbjct: 192 CNPRLAPC--PCDSLAGVGVAFLLMAAVNRLLPGSPC-----DMREVLDLVALGTLADVV 244

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIG 312
            L G NR  V  GL++      PG+ AL E    +   P+ A  + + + P INA GR+G
Sbjct: 245 DLNGQNRILVKNGLLLIAEGRRPGIFALKEAACYNPTAPMGAGQVVFGLAPRINAAGRLG 304

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L   LL++ D +    LA KLD +N  R+  E  +  +A A+  TQ   +      V
Sbjct: 305 QADLALELLLAPDRETARPLAAKLDAMNSERKHEEERITAEALAQAETQLHRVGL----V 360

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A+R+ E F RP   +S EEDG   GSGRSI+ FD+           
Sbjct: 361 LSSPGWHHGVIGIVASRMVEAFYRPVLILS-EEDGLLKGSGRSIDEFDLH--QGLCACAT 417

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L   GGH  AAGL +       L + F +     V      P  K+DG+L    ++  L
Sbjct: 418 LLTGFGGHRQAAGLRLRSSELDALREAFDQAVRTQVGDAPLAPRMKLDGLLAFGLIDQRL 477

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGT 551
           +  LE   P+G GNP PVF      +++ R+    H+ +    +    TL+A A+R   +
Sbjct: 478 LRELELLQPFGMGNPEPVFLHSGAMVRAHRIFAGKHVSLDLRDEASGVTLKAKAWRQAES 537

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                L    GK + +     +N + G  + +L + D  P 
Sbjct: 538 LPHAVL----GKPISLAFTPKINSYNGLDQIELHIKDWKPA 574


>gi|139437965|ref|ZP_01771518.1| Hypothetical protein COLAER_00505 [Collinsella aerofaciens ATCC
           25986]
 gi|133776162|gb|EBA39982.1| Hypothetical protein COLAER_00505 [Collinsella aerofaciens ATCC
           25986]
          Length = 1095

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 164/577 (28%), Positives = 268/577 (46%), Gaps = 24/577 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW   + Q+       ++    IP +VAR++V   + SI   + FL PS+     DPLI+
Sbjct: 9   RW--AVAQQNPELEKELSAGLGIPGLVARIMVAHGIGSIKEGQLFLTPSLDRDWADPLII 66

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
                 A R+ +AI N E I +FGD+DVDG  S  L+   L     +   +IP R  +GY
Sbjct: 67  PGMSVVADRVERAIRNHEHIAVFGDFDVDGITSTCLLTEALRTFGADVTPFIPRRFDEGY 126

Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G + + +++       QLI+TVD G  + + + Y  + GID++V DHH+  S+++P    
Sbjct: 127 GLSRAALDRVNELARPQLIVTVDNGIAAKEEVSYLKSLGIDLVVTDHHE-PSDQVPQGVP 185

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +   +LDD      L  AGV   ++ ++   L +           SL+++ AL TV D++
Sbjct: 186 LTDPKLDDDGPSRELAGAGVALKLVQVLGERLGK------PSYWRSLIEVAALGTVSDMM 239

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
           PL   NRA V +G+   R    PG  AL             + L + + P +NA GR+ +
Sbjct: 240 PLTPENRALVAEGIQQMRVTARPGYIALAALAKADLSSITADGLSFSLIPRLNAAGRMAD 299

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   LL++ D  E   LA +L+ +N+ RR +E+ +   A AKV            IVV
Sbjct: 300 PKLALDLLLARDPIEASALAAELEEINRQRREIEAELTRDAMAKVEET---YDGGRAIVV 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G+ G++A+RL  ++  P+   S  EDG   GSGRS+   ++   +       +
Sbjct: 357 GGEGWHEGVKGIVASRLTNRYHVPALLFS-IEDGIARGSGRSVGKVNLFDAIERC--SDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           +++ GGHA A G+T+E                  +PA       ++   ++ S +NI  I
Sbjct: 414 MIRRGGHAGAVGVTIEASKLDEFRRRLSVVLSE-LPAEDFEDTDEVAATVDLSELNIETI 472

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTP 552
           + +    P+G GN  P+ A     +    VV      M F + D   ++ AI FRV    
Sbjct: 473 EQISRLEPFGQGNKVPLLAAEGVTMCDRAVVGKTGEHMRFVATDGAASVPAIMFRVPQID 532

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                + +    + +       +W+G  + +L V D 
Sbjct: 533 ----KLINCDSAVDLVFEAVAEHWQGRVKPKLMVKDV 565


>gi|310658611|ref|YP_003936332.1| single-stranded-DNA-specific exonuclease [Clostridium sticklandii
           DSM 519]
 gi|308825389|emb|CBH21427.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           sticklandii]
          Length = 777

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 169/548 (30%), Positives = 286/548 (52%), Gaps = 20/548 (3%)

Query: 44  ARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           + +L  R ++I+ +K FLNP+   L+  P +L D +K   RI  A Y S+ I I+GDYDV
Sbjct: 18  SHLLNVRQINIEESKSFLNPTKADLI-SPYLLKDMEKVVNRINTAKYKSQLICIYGDYDV 76

Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           DG +SV+++++  +   +N+  YIP RI +GYG N   ++     GA LIITVDCG TS 
Sbjct: 77  DGISSVSILLKTFNFLGINSIFYIPKRIEEGYGINTQAIDTIKKMGADLIITVDCGITSV 136

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           D ++YA    +DVIV DHH+ K     A  ++NP + +      HLC AG+   +   + 
Sbjct: 137 DEIEYAKTIDLDVIVTDHHECKEILPDAIGIINPKQDECEYPYKHLCGAGIALKIAQALI 196

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
                      +     L+++  +AT+ D+V L G NR  V  GL+  ++  N GLKAL+
Sbjct: 197 E-------DNDSALFDELIEIACIATIADIVELSGENRVIVKNGLLSLKKTINIGLKALM 249

Query: 284 ERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
           E     SS I + N+ +++ P IN+ GR+G   LG  L+I DD +E  ++A K++ LN+ 
Sbjct: 250 EVSGINSSNINSSNIAFILAPRINSTGRMGTPELGVSLIIEDDFEEAVIMARKIEELNRE 309

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+ +E  + E+A A +  +    +   +++     WH G++G++A++L EK+ +P+F I+
Sbjct: 310 RQTVELKIFEEAVALIEQKS---KNNKILIASSKNWHSGVIGIVASKLTEKYNKPTFVIA 366

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
            E++  G GS RSI+GF++    +    +  L+K GGH  AAG+T+             +
Sbjct: 367 IEDENIGKGSARSIDGFNL--FENLLKLDECLIKFGGHNQAAGITIHEDRIAEFELMINE 424

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
            A  I+       + +ID  L    +N   + +L    P+G GN  P+F   N+KL + +
Sbjct: 425 IAEEILNKNHFQRIIEIDSKLKLKDINSNTLKILNELEPFGIGNRKPLFCLTNYKLSNYK 484

Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582
            +    ++  F+S+ ++ ++ I F  +               +     L +N +    + 
Sbjct: 485 YIGK--MKKHFKSEINDDIEIIGFNKHEL----INNIDLNFPVDFVFELEINSFNNKDKI 538

Query: 583 QLRVLDAS 590
           QL + D  
Sbjct: 539 QLLLRDLR 546


>gi|332524445|ref|ZP_08400657.1| single-stranded-DNA-specific exonuclease RecJ [Rubrivivax
           benzoatilyticus JA2]
 gi|332107766|gb|EGJ08990.1| single-stranded-DNA-specific exonuclease RecJ [Rubrivivax
           benzoatilyticus JA2]
          Length = 569

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 176/586 (30%), Positives = 264/586 (45%), Gaps = 32/586 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
           +          A A+ ++  +  ++AR+L  R V    A D L+     L+  P  L   
Sbjct: 2   ILQSRDVPPRAAFAL-EQAGVHPLLARLLAARGVR---AADELDTHPSRLLR-PDALRGA 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIVDGY 135
            +A R +   +    +I +  DYD DGA + A+ +R L+       + +  +PDR V GY
Sbjct: 57  AEAGRLLADTLAGGGRICVVADYDCDGATACAVALRGLAMLGARREHLHYVVPDRAVHGY 116

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIP 190
           G  P+++E    +   L++TVD G  S + + +A + G+ V+V DHH             
Sbjct: 117 GLTPAIVELAREKRPDLLVTVDNGIASLEGVAHARSLGLAVLVTDHHLPAMDASGVVLPA 176

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALA 248
           A  +VNPN+         L   GVVF VL+     LR            L SLLDLVAL 
Sbjct: 177 ADVIVNPNQPGCGFDSKALAGVGVVFYVLLAARAELRARGAFDAASQPRLESLLDLVALG 236

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSIN 306
           TV DVV L   NR  V  GL   R  +  PG+ AL      +     + + G+ +GP IN
Sbjct: 237 TVADVVRLDANNRRLVGLGLARVRAGRMQPGVAALFAVARRAPERAASFDFGFALGPRIN 296

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+ +  LG   L+SDD      LA +LD +N+ RR +E+ M E AEA V        
Sbjct: 297 AAGRLADMTLGIECLLSDDPMRAAELAAQLDTINRERREVEAGMREAAEATVERYGSADT 356

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
             +V  +    +H G+VG++A RLK++  RP+FA +   DG   GSGRSI GF +   + 
Sbjct: 357 PPAV-ALFDPGFHEGVVGIVAGRLKDRLHRPTFAFACGADGTLKGSGRSIPGFHLRDALD 415

Query: 427 FA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                  G+L++ GGHAMAAG T+    F       +  A   + A        +DG L 
Sbjct: 416 LVAKRHPGLLLRFGGHAMAAGCTLAAGGFETFEQALRAVAGEWLDAATLERRLAVDGPLE 475

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
               +   + +LES   +G G   PVF     ++   R+V   H ++           AI
Sbjct: 476 PQWFDTKTVALLES-QVWGQGFEAPVFCDE-VQVVQQRLVGEKHTKLRLRH-GGALRDAI 532

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F                +R+ +   L ++ W G +R Q+ V  A+
Sbjct: 533 WFGHAE---------PLPERLRLAYRLSLDEWNGQQRVQMVVEAAA 569


>gi|225377723|ref|ZP_03754944.1| hypothetical protein ROSEINA2194_03374 [Roseburia inulinivorans DSM
           16841]
 gi|225210400|gb|EEG92754.1| hypothetical protein ROSEINA2194_03374 [Roseburia inulinivorans DSM
           16841]
          Length = 584

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 161/597 (26%), Positives = 269/597 (45%), Gaps = 44/597 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLIL 75
           +W  +           + ++  I  + AR++ NR V  + A + +L  S++ L  DP +L
Sbjct: 3   KWFVINKGADF---EKLGKEFGISPVTARLIRNREVIGEAAFERYLYGSLKDLY-DPHLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D D+    +   I   + I I GDYD+DG  S  ++ R + HC  N +  IPDR+ DGY
Sbjct: 59  KDADRLTDILKVKIEEQKPIRIIGDYDIDGVMSTYILYRGIKHCGGNVSTQIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-------- 187
           G N +L+++   +G   I+T D G  +   + +A   G+ V+V DHH++           
Sbjct: 119 GINENLIDQAKRDGMDTILTCDNGIAAISEIAHAKELGMTVLVTDHHEIPYTEENGEKQF 178

Query: 188 -EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+VNP + +       LC A V + VL ++Y  +          +    L+ VA
Sbjct: 179 LRSNADAIVNPKQQECAYPFKELCGAAVAWKVLQVLYEKMG-----FALEETYEFLENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305
            ATV DV+ L   NR  V +GL    R  NPG++ALI + ++    I A + G+++GP I
Sbjct: 234 FATVGDVMDLTDENRILVKEGLNRIHRTKNPGMRALIFQNHLEPEQINAYHFGFVLGPCI 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  + L   L      +E    A +L  LNQ R+ M +  +E+A+  V       
Sbjct: 294 NASGRLDTAKLSLSLF-LQGEEEAAKTARELVELNQQRKDMTADGVEEAKRVVEEHYMSD 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +   V+V+   + H  + G++A R++E + +P F ++  E+G   GSGRSIE + +    
Sbjct: 353 K---VLVIYLPQVHESLAGIIAGRIREAYHKPVFVLTKAEEGV-KGSGRSIEEYSMY--E 406

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                  +L K GGH MAAGL++   N  +  +     A+  +      P  KID  + A
Sbjct: 407 ELCKCRELLEKFGGHPMAAGLSLPEENVDKFREKINACAN--LTEDDLIPKIKIDIPMPA 464

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           +  +  LI       P+G  N  P FA  N  +    VV      L++   +   E + A
Sbjct: 465 AYADAGLIREFAVLEPFGKANIKPQFADKNLSITRAFVVGKNQNVLRLNLLTAAGEAVTA 524

Query: 544 IAFRVYGTPLGEFLMQSRGKRMH-------------VTGHLCVNYWRGSKRCQLRVL 587
           + F         +  +     +              +  +  +N + G +  Q+ + 
Sbjct: 525 VYFGDIEAFKAYYAEKYGSAEVEKAFRGQINKLRIMIVYYPEINEYNGVESVQVIIR 581


>gi|15618474|ref|NP_224759.1| ssDNA exonuclease [Chlamydophila pneumoniae CWL029]
 gi|15836094|ref|NP_300618.1| ssDNA exonuclease [Chlamydophila pneumoniae J138]
 gi|16752476|ref|NP_444738.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           pneumoniae AR39]
 gi|33241916|ref|NP_876857.1| ssDNA-specific exonuclease [Chlamydophila pneumoniae TW-183]
 gi|4376856|gb|AAD18703.1| ssDNA Exonuclease [Chlamydophila pneumoniae CWL029]
 gi|7189118|gb|AAF38060.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila
           pneumoniae AR39]
 gi|8978934|dbj|BAA98769.1| ssDNA exonuclease [Chlamydophila pneumoniae J138]
 gi|33236426|gb|AAP98514.1| ssDNA-specific exonuclease [Chlamydophila pneumoniae TW-183]
          Length = 588

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 161/584 (27%), Positives = 274/584 (46%), Gaps = 13/584 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
             S +G  W     +E       I ++  +P  VA++ ++R   +I     FL   +  L
Sbjct: 6   NASAAGLLW--AHPKEDPAFLGMIIKEFHLPPTVAQIFISRGFQTIQEIHKFLYSHLSSL 63

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DP +  D  KA  R++ A    E +MI+GD DVDG   VAL++ FL    V+ + +  
Sbjct: 64  Y-DPGLFLDMSKAVERLLLARDRKEHVMIYGDSDVDGMTGVALLVEFLRDIDVHVSYFFL 122

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
             I+  +G   +L+ K   EG  L+ITVDCG T+   +   T QGIDVI+ DHH    + 
Sbjct: 123 GAILKQHGETSTLIAKLKEEGITLLITVDCGITAGKEVSDITRQGIDVIITDHHMPTGKI 182

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLLDLVAL 247
               A +NP   D       L   GV F +   +   L   N VP     L  LLDLV L
Sbjct: 183 PHCVATLNPKLRDHTYPNRELTGVGVAFKLARGVLNALISRNLVPKSQGSLKKLLDLVTL 242

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306
            T+ DV  L+G NR  V  G+    R   PGL  L        S +T+ ++   I P +N
Sbjct: 243 GTITDVGVLLGENRVMVRYGIKEIARGARPGLNKLCALCGVEKSEVTSTDIVLKIAPKLN 302

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           + GR+ +   G  LL++ D + ++ L M+LD +N+ R+ +E+ + +  +  + +  + ++
Sbjct: 303 SLGRLDDPAKGVELLLTQDDERVDALIMELDNINRERQRIEAEVFQDVQEILNSNPEILK 362

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
           QA++ V+    WH  ++ +++ARL + + +P   I+ +  G G GS R+I  F +  ++ 
Sbjct: 363 QAAI-VLSSTAWHARVIPIISARLAKTYNKPVVIIAIQ-RGIGKGSARTIGSFPLLGVLK 420

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                 +L+  GGH  AAG+ ++          F    ++ +    T P  +ID   +  
Sbjct: 421 KC--SSLLLSYGGHDFAAGVIMKEDKVEDFKKKFVHLVNSSLKKGDTLPHLEIDAYADFD 478

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
           A++  L+  +E   P+G GN  P+F     +++  +V+   HL++    ++   L+ +AF
Sbjct: 479 AIDYDLLASMELFEPFGKGNLMPIFYSKVRQVRYPKVLPGNHLKLYLSQKE-RNLEGVAF 537

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +      + L  S    + +     ++   GS    L V D  
Sbjct: 538 GLGRH--ADALKASWHYPLEIAYTPRLSQTSGSGVIHLLVRDFR 579


>gi|295398001|ref|ZP_06808057.1| single-stranded-DNA-specific exonuclease RecJ [Aerococcus viridans
           ATCC 11563]
 gi|294973759|gb|EFG49530.1| single-stranded-DNA-specific exonuclease RecJ [Aerococcus viridans
           ATCC 11563]
          Length = 780

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 174/600 (29%), Positives = 288/600 (48%), Gaps = 35/600 (5%)

Query: 11  CSISGFRWVSLLGQEGINR-----ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPS 64
            S+  + W+        +         + +  ++P +V +V+ ++   + +  + F+   
Sbjct: 2   QSV--YEWIEPEYLSNADDTAATFIQQLAEDLSLPKMVVQVIYDKGYQTAEAIQAFIAK- 58

Query: 65  IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
              +  DP +L D +KA  R+ QA+ + E+I+I+GDYD DG  S  ++   L     N +
Sbjct: 59  -EPVFYDPFLLKDMEKAVSRLHQAVEDYEEILIYGDYDADGITSTTILYETLEMLGANVS 117

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            Y+P+R  DGYGPN  +   +I +G QLI+T D G   ++A+ YA +QG+DVI+ DHH++
Sbjct: 118 FYLPNRFDDGYGPNKDVYAYYIKKGTQLILTCDNGVAGHEAVAYAKDQGVDVIITDHHEI 177

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                 AYA+V+P   +     G L  AGV   +   +           L      LLD+
Sbjct: 178 GDSLPDAYAIVHPRHPEGQYPFGDLAGAGVALKLATAL-----------LGETPSDLLDV 226

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGP 303
            A+ TV D+V L   NR  V  GL   +     GL+   E+ +I    I  + +G+++GP
Sbjct: 227 AAIGTVADLVSLTDENRVIVASGLDQMKHTERLGLQMFFEKESIQPDQIDEQTIGFILGP 286

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+G+ N G + L S D QE+  L   LD  N  R+ +   M+ +AEA V  +  
Sbjct: 287 RLNALGRLGDPNPGVQFLTSFDDQEVGELVELLDSENNARKAIVDKMVTEAEAIVDGEG- 345

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIG 422
             Q   +I++  + WH G++G++A+RL EK+ RP+  +S   E+G   GSGRSIEG D+ 
Sbjct: 346 --QLPQMIILGQEGWHEGVLGIVASRLVEKYHRPTILLSKKPENGSYKGSGRSIEGIDLF 403

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           +++     +    K GGH MAAG+TV    F                        KIDG+
Sbjct: 404 QVLQA--GKDYADKFGGHEMAAGMTVAIDQFEAWKSALLDRVAEFEAVYTQQTPLKIDGI 461

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSET 540
           +  + + +  I  L+   P+G  N  P+F   + +L  I+++      L++T    D +T
Sbjct: 462 IGITDITLENIKALDPIKPFGTDNRQPLFLIKDVQLSQIQLIGKDKNTLKLTVADADVKT 521

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
              IAF+               + + V   L +N W G++  Q ++ D        F  +
Sbjct: 522 -SMIAFKSGAL----AKQLVANEPIDVVVTLSINAWNGNQSPQAQIKDIRQSSKSIFDLR 576


>gi|253826203|gb|ACT36387.1| single stranded specific exonuclease [uncultured bacterium L11E10]
          Length = 598

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 178/577 (30%), Positives = 274/577 (47%), Gaps = 34/577 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++P ++ RV   R  ++D A+    P +  L P P +L+  D A   + +AI N   I++
Sbjct: 21  SMPPLLQRVYAARG-ALDQAQA--RPRLAQLHP-PQLLSGMDAAVALLAEAIANDRHIVV 76

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      + +  +P+R+  GYG +PSL+ +       L++TV
Sbjct: 77  VGDFDCDGATACAVAVRGLVMLGARHVSPAVPNRVTHGYGLSPSLVSELAELKPDLLVTV 136

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A   G  V+V DHH       PA+A+VNPN   D+     L   GV+F
Sbjct: 137 DHGIACHAGIAQARALGWQVLVTDHHLPGPTLPPAHAIVNPNLAGDVFPSKSLAGVGVMF 196

Query: 217 LVLVLIYRILRQDNK--------------VPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
            VL+ + R +  D+                    DL SLLDLVA+ TV D+VPL   NRA
Sbjct: 197 YVLLALRRHVFGDHPDRGEQTVAIEGRASQQKRPDLNSLLDLVAVGTVADLVPLDANNRA 256

Query: 263 YVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320
            V  GL   R  QG  GL+ALIE        ++A ++G+ I P +NA GR+ +  LG   
Sbjct: 257 LVAAGLRRLRAGQGCAGLRALIEVCGRRAQTLSAADIGFAIAPRLNAAGRLEDMALGIAC 316

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ D+      +A  L  +N  RR ++  M ++AE  +       +    + +    WHP
Sbjct: 317 LLCDEDGPAREMAGILHAINTERRGVQQQMTDEAELALSRVTLGGEMPLALCLFDREWHP 376

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVK 436
           G+VGL+A+++K++  RP  A +  E G     GS RSI GF I   ++   A   G+L K
Sbjct: 377 GVVGLVASKMKDRVHRPVIAFAPAEPGSSALRGSARSIPGFHIRDALAAVDARHPGLLQK 436

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHAMAAGL+++  +       F   A   + A +       DG L     + A  + L
Sbjct: 437 FGGHAMAAGLSLDLAHLPAFEAAFAAHAAAALDATLLQAELPSDGELLPHEFDRAHAEAL 496

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGE 555
              GP+G G   P+F     ++   R V   HL++     Q +  L AI F   G     
Sbjct: 497 RDGGPWGQGFAEPLFDG-VFEVIDWRAVGERHLKLVLRCPQRAAPLNAIHFNGLG----- 550

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              +    ++H+   L  + +RG +  QL +    P 
Sbjct: 551 --AEPPPAQVHLVYRLVPDDYRGGEAIQLIIEHCVPA 585


>gi|87303468|ref|ZP_01086251.1| RecJ exonuclease [Synechococcus sp. WH 5701]
 gi|87281881|gb|EAQ73844.1| RecJ exonuclease [Synechococcus sp. WH 5701]
          Length = 642

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 161/581 (27%), Positives = 272/581 (46%), Gaps = 28/581 (4%)

Query: 16  FRWVSLLG---QEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPD 71
            RW   +     +  + A  +     +P  +  VL  R     +  ++ L P      PD
Sbjct: 21  QRWQLPVPLQPSQDEDLAREMA-ALGLPPELLAVLRRRGYDSPEAIRELLEPPPA---PD 76

Query: 72  PLI-LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           P +   D   A +R+++A   +E + I GDYD DG  S AL++  L          IP R
Sbjct: 77  PRLHFADLAVAVQRLMRACAEAEAVAICGDYDADGMTSTALLVGVLERLGARPQAAIPSR 136

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             +GYG N  ++E+   EG +L++TVD G  + +AL  A + G++VI+ DHH + +E  P
Sbjct: 137 QDEGYGLNAGMVERLWGEGVRLLVTVDNGIAAREALDRARDLGVEVILTDHHTLPAEHPP 196

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
             AL++P    + S    L   G+ +L+ +++   L + +   +       LDL  + TV
Sbjct: 197 YLALLHPACTPEGSPYRGLAGVGLAYLLAMVLATELGRADATAMA------LDLFCIGTV 250

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309
            D+ PL+G+NR ++  GL        PGL+AL         P+ A  + + + P INA G
Sbjct: 251 ADMAPLLGVNRRWLRDGLRRLHASSLPGLQALQRLAGLGEEPLDATAVAFKLAPRINAVG 310

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G+  L   LL + D      LA   + LN+ RR +  A+  +A A V  + D  + + 
Sbjct: 311 RLGDPALVVDLLTTSDHDRAMALAQDCEALNRQRRELCEAIEAEAVALV--EADGPEPSP 368

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            +++    WH G++G++AARL E++G P   ++ E  G+   S R+  GF + + +S   
Sbjct: 369 FVLLAQTHWHHGVIGIVAARLVERYGLPVALLAGEGGGRLRASVRAPRGFAVDQALSHCG 428

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +L + GGH  A G +V+      L +   + A + +    +    + +  L    + 
Sbjct: 429 T--LLERHGGHPAAGGFSVKAERLADLHEQLNRLAASWLGDRGSGSPVEPEACLALHRIG 486

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
                 L+   P GAG P PVF     ++ S R++   HLQ+  E Q    L+AIA+R  
Sbjct: 487 RGFWRDLQRLEPLGAGLPAPVFWSNACRVISQRLLRGGHLQLELEQQ-GSRLRAIAWRWQ 545

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           G         +  + + V   L  + W+G +R QL ++   
Sbjct: 546 GEG-------TVPELVDVAYRLRSDSWQGEERLQLELVGLR 579


>gi|282900800|ref|ZP_06308740.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281194330|gb|EFA69287.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 607

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 163/601 (27%), Positives = 280/601 (46%), Gaps = 36/601 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLI 74
            RW     ++    A  +   + +  I+ ++L+NR +        F+NP    L      
Sbjct: 13  QRWHI--AKQNQELAQNLASVNNVSPIIGQLLINRGMETPEIATRFINPECINLPSPLDE 70

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D   +   +  AI N EKI I GDYD DG  S AL++R L     N +  IP R+ +G
Sbjct: 71  FPDLVASVELLASAIRNHEKIAICGDYDADGMTSTALLLRSLGSLGANIDYAIPSRMHEG 130

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N  ++E+F +EG  LI+TVD G  +++ +  A   G+ VI+ DHH +  +   A A+
Sbjct: 131 YGINKRIVEEFHSEGVSLILTVDNGIAAFEPIARAKELGLKVIITDHHDLPPQLPVADAI 190

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP  +   S    L   GV +++ V + + L++     +   +  +LDL  L T+ D+ 
Sbjct: 191 LNPKLISLSSPYRGLAGVGVAYVLAVCLAQHLQK-----ITGLVQPMLDLFTLGTIADLA 245

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---------------PITAENLGY 299
           PL G+NR ++ +GL    +   PG++ALI+   +                  +  E++G+
Sbjct: 246 PLTGVNRRWIKRGLKSLYKSNLPGVQALIQVSGVQPSMGENQQVSKAQNSKSLKPEDIGF 305

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
            +GP INA GRIG   +   LL +DD       AM+ + +N  R+ +   +  +A   V 
Sbjct: 306 RLGPRINAVGRIGNPQIVIELLTTDDMGIALERAMQCEQINAERQKICEEIQGEAILLVE 365

Query: 360 TQC-DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
                ++ Q  V+VV  D WH G++G++A+RL E++G P F  ++E +    GS R I  
Sbjct: 366 DLYAQNLHQDRVLVVVKDNWHHGVIGIVASRLVERYGVPVFIGTYENNHLVRGSARGIPE 425

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
           F++   + F     +L K GGH  AAG ++   N         +FA+  +      P+ +
Sbjct: 426 FNVFDALEF--SSDLLYKYGGHKAAAGFSLPAANLENFRLRLSEFANQCLEVQHLKPLLR 483

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE---S 535
           IDG +N   VN  L   L    P G  NP+P+F  P  ++   +++    +++T      
Sbjct: 484 IDGQINLCQVNRDLFKQLNILHPCGIENPDPIFWTPQVRVVEQQMIGKGSIKLTLAQIID 543

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                ++A+A+R                 + +   L  N + G+   +L ++     + +
Sbjct: 544 NIRYEIRALAWRWGDYF-------PLPFTIDIAYKLRENNFNGANDIELELVGVRLPQQY 596

Query: 596 H 596
           H
Sbjct: 597 H 597


>gi|7453624|gb|AAF62912.1| RecJ [Neisseria gonorrhoeae]
          Length = 566

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 166/562 (29%), Positives = 259/562 (46%), Gaps = 28/562 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + A+ +  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + ++ +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL  +   LR+ N         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLTALRAELRRRNYFSDGIKEPNLGGLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML  A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AARLNNLNIERREIEQSMLRDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  +  DG L A  + +     L +   +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPACDITLEQAQNL-ACHVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H +   + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
                N WR +   QL +    
Sbjct: 543 YRPVANEWRNNLELQLYMDYWE 564


>gi|303247420|ref|ZP_07333692.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           fructosovorans JJ]
 gi|302491116|gb|EFL51008.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           fructosovorans JJ]
          Length = 567

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 178/579 (30%), Positives = 272/579 (46%), Gaps = 23/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
            RW+          A  +     +   +A +L  R ++   A D +L+P +R LM  P  
Sbjct: 3   KRWIFPTADVAPQTADVLADALGVSPTLAALLYRRGLTTAEAMDAYLSPGLRRLMA-PGA 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   D AA  + Q++   +K+ ++GDYDVDG  + AL++ FL          +P+R  +G
Sbjct: 62  IPGMDAAAALLAQSLAQGKKVAVWGDYDVDGITATALLVDFLRERGYAPLWRLPERAAEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E    EGAQ+++TVDCG    +A+  A   G+ VIV DHH    E  PA A+
Sbjct: 122 YGLNIPGIEALAGEGAQVLVTVDCGIGGVEAVARAKELGLAVIVTDHHLPGPELPPADAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   D       L   GV F ++  I R+L  +       D+  LLDLVAL T+ DVV
Sbjct: 182 VDPKLADGPGT--DLAGVGVAFFLVAAINRLLPGEPS-----DVRRLLDLVALGTLADVV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIG 312
           PL G NR     GL++      PG+ AL E    +    + A  + + + P INA GR+G
Sbjct: 235 PLRGPNRILAKNGLLLLAEARRPGVHALKEVSGHNPKATLGASQVTFGLAPRINAAGRMG 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             +    LL++ D      LA  LD  N  RR  E A+L +A      Q D       + 
Sbjct: 295 RPDAALDLLLAPDLDVARPLAADLDAENARRRAEEDAILTEAL----AQADASPNGHGLT 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +    WH G++G++A+R+ E+  RP+  ++ +E  G   GSGRSI   D+  +++    +
Sbjct: 351 LFAPHWHQGVIGIVASRVAERRYRPTLILTADEAKGVLKGSGRSIPECDLHGLLTE--IQ 408

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH  AAGL++E  N   L   F + A   +   + TP   +D  L    V   
Sbjct: 409 DVLRTFGGHRQAAGLSIEPDNLALLTRRFDEAAARALGPTLPTPSLTVDAELAFDGVTAT 468

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYG 550
            I  +    P+G GNP PVFA P   + + R     H+ +T        TL+   + +  
Sbjct: 469 FIREIGLMEPFGCGNPEPVFASPPVSVVATRPFGQNHVALTLRDPGAGITLRGKGWGMA- 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              GE   + +G  + V     + Y+ G    +LR+ D 
Sbjct: 528 ---GEVGTRPKGATVRVAFSPKITYFSGVPEIELRLRDV 563


>gi|320353881|ref|YP_004195220.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobulbus
           propionicus DSM 2032]
 gi|320122383|gb|ADW17929.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobulbus
           propionicus DSM 2032]
          Length = 585

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 165/573 (28%), Positives = 277/573 (48%), Gaps = 26/573 (4%)

Query: 34  TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS 92
            ++  IP  +  ++ +R + +++  + FL P + +L P P  +    +A   IV A   +
Sbjct: 25  AKEFRIPRQLGEIMYHRGLRTLEAVQAFLYPQLSML-PSPDSMKGIGEAVDSIVHACTTA 83

Query: 93  EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ- 151
             I I GDYDVDG  + AL+  F +   ++ + YIP+R+ + YG +   +++ + +  + 
Sbjct: 84  SPIFIHGDYDVDGITATALLTVFFNEIGIDTHYYIPNRLEERYGLSVRSIDRLLAQSREA 143

Query: 152 ----LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
               L+ITVDCG ++   + YA  +G+ VI+ DHH+ ++    A AL+NP + D      
Sbjct: 144 GRGGLLITVDCGISAVREVAYARERGLVVIITDHHEPQATLPCADALLNPKQHDCRFPFS 203

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
            L   GV F ++V + +   +         +L   LDLVAL TV DVVPL+G+NR  V  
Sbjct: 204 QLSGVGVAFFLIVALRKAFMERGLFAARSLNLKKYLDLVALGTVADVVPLVGVNRILVRA 263

Query: 267 GLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325
           GL V   +  PGL +L E   I    I AE++ + + P INA GR+G   LG  LL++ D
Sbjct: 264 GLEVLSAKNRPGLLSLCECCGIGHREILAEDISFKLAPRINAAGRLGVPRLGVELLLAKD 323

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385
                  A +L+ LN  R+ +E + L   E +   Q +       + V     HPG++G+
Sbjct: 324 HAGARRAADELERLNTARKQLEGSALAAIEQQCAHQVEA--GVDGLAVYHADCHPGVLGI 381

Query: 386 LAARLKEKFGRPSFAISFEEDGKG----IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           LA+++ E+F RP+   + ++  +      GSGRS+ G  +  ++      G++ + GGHA
Sbjct: 382 LASKIVERFHRPAIIFTDDQQHRAGTNLKGSGRSVAGVHLFHLLEQC--NGLIDQFGGHA 439

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITT-PVFKIDGVLNASAV-NIALIDMLESA 499
           MA GLT+++       D F +        ++       ID  L   ++  +     L   
Sbjct: 440 MAVGLTIDKTLLPSFADLFNRQVTTRHAEVLRQGRGIVIDCHLTDKSILTMEFAWALRLL 499

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
            P+G GNP P F     +L   + VN  HL+      +      I FR     L      
Sbjct: 500 QPFGEGNPEPTFLLSREQLVQPKGVNG-HLRFQLRGANGHVFPGIGFR-----LAPAGRN 553

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             G +  +  HL  +++RG+++ Q++ L   P 
Sbjct: 554 FHGSQ-DLVFHLKRSWFRGTEQTQIQALHLVPH 585


>gi|299144023|ref|ZP_07037103.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518508|gb|EFI42247.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 589

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 173/601 (28%), Positives = 296/601 (49%), Gaps = 39/601 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           +W     ++       +     I   +  +L NR++  +   + FLNP++  L   PL+L
Sbjct: 3   KWFLKNTKDLTLDYEKL----NINKYICNILFNRDIDTEEKLEKFLNPNLEDLHT-PLLL 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  KAA  ++ ++  ++KI I GDYDVDG  S  ++ + LS+   N +  IP+R+ DGY
Sbjct: 58  PDLIKAANILINSVATNKKIRIIGDYDVDGVMSTYILYKGLSYLKANVDYRIPNRVSDGY 117

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK------SEEI 189
           G N  L+++   +G  LIIT D G  + D +QYA   GI VIV DHH+V           
Sbjct: 118 GINLRLIDEARTDGIDLIITCDNGIAARDEIQYAVENGIGVIVTDHHEVPVDTEKKELLP 177

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
            A A+V+P R         +C A V + ++  +Y+I    N +         L+ VA+AT
Sbjct: 178 NALAIVDPKRESSKYPFREICGATVAYKLITYLYKI----NGIEDEKLYSDFLEFVAIAT 233

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAG 308
           +CDV+PLI  NR  V KGL    +  N G+KA+I   +  ++ I+A ++G++IGP+IN+ 
Sbjct: 234 ICDVMPLIDENRVLVFKGLEYLNKTKNSGIKAIINAADLSNNLISAYHIGFIIGPTINSS 293

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+  +++  +LL+ +D       A  L  LN  R+ +     E+ + K++ + + +++ 
Sbjct: 294 GRLESADIAVKLLLEEDYNVALKYATYLRELNSKRQKLTDDGFEKID-KIVNEFNLLEKF 352

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            V+++        ++G++A R+KEK+ RP+  ++     +  GSGRSIEGF++ + VS  
Sbjct: 353 PVLILRDKEIDESVIGIIAGRIKEKYNRPAIILT-TSKDELKGSGRSIEGFNLFEHVSA- 410

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             + +L + GGHAMA GL++E  NF +          + +          ID  +N S V
Sbjct: 411 -SKELLSRFGGHAMACGLSLEEENFKKFVIDVNN--KSNLTKEDLIKKVYIDTQINLSDV 467

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546
           +I+L   +E   P+G GN  P+FA     ++   V       ++M      ++   AI F
Sbjct: 468 DISLATDIEKLNPFGNGNSKPLFATRELSIRKFNVFGKNKNVIKMVIGDSITQR-DAILF 526

Query: 547 RVYGTPLGEFLMQS-------------RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                 L +                     ++ +T    +N +RG+   +L++      E
Sbjct: 527 ENIDEFLDKISKYYNQDEIYKLKNNMTNNIKLDITYIPEINSFRGNDNIELKISHYRVSE 586

Query: 594 G 594
           G
Sbjct: 587 G 587


>gi|171463254|ref|YP_001797367.1| single-stranded-DNA-specific exonuclease RecJ [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192792|gb|ACB43753.1| single-stranded-DNA-specific exonuclease RecJ [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 601

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 163/581 (28%), Positives = 264/581 (45%), Gaps = 36/581 (6%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
              A  + Q   +  ++AR+   R +        L+  ++ L+  P+ L +C   A  + 
Sbjct: 11  KRTATWLAQS-GLHPLLARLYAARGLQSPEE---LSLDLKQLI-SPIELKNCINTASLLA 65

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIVDGYGPNPSLME 143
             +   E ++I  DYD DGA + A+ +R L             +P+R   GYG  P ++E
Sbjct: 66  DILEKKEPMLIVADYDCDGATACAVGLRGLRMLGGPDTPIQFLVPNRFTMGYGLTPEIVE 125

Query: 144 --KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
                N   + +ITVD G  S   +  A   G++VIV DHH        A A+VNPN+  
Sbjct: 126 LASQKNPKPKYLITVDNGIASEAGVNRAKELGMEVIVTDHHLPGDHLPKALAIVNPNQPG 185

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGL 259
                  L   GV+F +LV +   LR+  K        + +LLDLVAL TV D+  L   
Sbjct: 186 CTFPSKALAGVGVMFYLLVALRAELRKRGKFTNKTQPKVENLLDLVALGTVADIAQLDRN 245

Query: 260 NRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           NR  V  GL   R   +                     +LG+ IGP +NA GR+ +  LG
Sbjct: 246 NRVLVSNGLKRIRAGVSQPGIEALFQAATRDPRKANTFDLGFAIGPRLNAAGRLADMTLG 305

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD--IQQASVIVVEG 375
            RLL++D++ E   LA +LD +N+ RR++E+   E A + +        + + + I +  
Sbjct: 306 IRLLLTDNTDEAMTLAHELDHINRERRVIETGTQETALSHLAEDQLSGTMSERNSICLWN 365

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---KGIGSGRSIEGFDIGKMVSFA--VE 430
             WH G+VG++A+RLKE+F RP+   +  +     +  GSGRS+ GF +   +      E
Sbjct: 366 PEWHQGVVGIVASRLKERFNRPAIVFAPADGNTGDELRGSGRSLTGFHLRDALDLVSKRE 425

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+++K GGHAMAAGLT+ + +F +    FQ+ A  ++   +       DG L       
Sbjct: 426 PGLILKFGGHAMAAGLTIRKGDFEKFDACFQQVASELLTDELLERRHPHDGGLEPFEFTP 485

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD----SETLQAIAF 546
            + D+L     +G G P P+F   + ++    ++   HL++          S+ L A+ F
Sbjct: 486 EIGDLLAE-EIWGQGFPQPIFYG-DFEITQQSLMKEKHLRLMLRPLGLGASSKPLTAVWF 543

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                       QS   +  +   L  + ++G  R QL + 
Sbjct: 544 NRT---------QSLPAKAKLAYRLVTDRYQGQARVQLMIE 575


>gi|300947613|ref|ZP_07161785.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           116-1]
 gi|300452810|gb|EFK16430.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS
           116-1]
          Length = 496

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 251/501 (50%), Gaps = 16/501 (3%)

Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
            DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD G +
Sbjct: 1   ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 60

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           S+  +++A + GI VIV DHH        A A++ PN  D       L   GV F +++ 
Sbjct: 61  SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIITPNLRDCNFPSKSLAGVGVAFYLMLA 120

Query: 222 IYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           +   LR             +L  LLDLVAL TV DVVPL   NR    +G+   R  +  
Sbjct: 121 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 180

Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
           PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +LA +
Sbjct: 181 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 240

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           LD LNQ R+ +E  M  +A       +         + +    WH G+VG+LA+R+KE+F
Sbjct: 241 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 300

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVN 452
            RP  A +   DG   GSGRSI+G  +   +        G+++K GGHAMAAGL++E   
Sbjct: 301 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 360

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
           F      F +     +   +       DG L+ + + + +  +L  AGP+G   P P+F 
Sbjct: 361 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 420

Query: 513 FPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
             + +L   R+V   HL++  E       L  IAF V      +    +  + + +   L
Sbjct: 421 G-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQLAYKL 475

Query: 572 CVNYWRGSKRCQLRVLDASPV 592
            +N +RG++  Q+ + +  P+
Sbjct: 476 DINEFRGNRSLQIIIDNIWPI 496


>gi|126643325|ref|YP_001086309.1| ssDNA exonuclease [Acinetobacter baumannii ATCC 17978]
          Length = 504

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 165/510 (32%), Positives = 246/510 (48%), Gaps = 16/510 (3%)

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KF 145
           QAI   +KI+I GDYD DGA S ALMM  L       +  +PDR   GYG  P++ E   
Sbjct: 3   QAIDEQKKIVIVGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAH 62

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVD G +S+  +  A   G+ VI+ DHH    E   A A+VNPN+L     
Sbjct: 63  HTYQPDLLITVDNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFP 122

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
              L   GV F VL  +  +  +  K      +   LDLVAL T  DV  L   NR  V 
Sbjct: 123 SKALAGVGVAFYVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVD 180

Query: 266 KGLMV-ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            G+    + Q   G+ AL++      + I A++LG+++GP INA GR+    +G   L++
Sbjct: 181 AGVKRIQQHQCRVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLA 240

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGI 382
           D  +    +A +L+ LN +RR +E  M +QA + + +     Q   + +V+  + WH G+
Sbjct: 241 DTMETAYPIAQQLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGV 300

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGG 439
           +G++A RLKE+F RP+   + +EDG    GS RSI+G  I   +    E+    +   GG
Sbjct: 301 IGIVAGRLKEQFHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGG 360

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HA AAGLT+ + NF      F      +    I       DG L  SA+ +  ++ +E  
Sbjct: 361 HAAAAGLTIRKENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQL 419

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           GP+G   P P F   + K+   R +   HL++     D  +  AIAF       G F   
Sbjct: 420 GPWGQKFPLPQFEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNTA----GRFEFD 473

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                +H+   +  N + G+   QLR++  
Sbjct: 474 PMRDHVHLVYEIDRNVFNGNVSLQLRIVHL 503


>gi|221633177|ref|YP_002522402.1| single-stranded-DNA-specific exonuclease RecJ [Thermomicrobium
           roseum DSM 5159]
 gi|221156347|gb|ACM05474.1| single-stranded-DNA-specific exonuclease RecJ [Thermomicrobium
           roseum DSM 5159]
          Length = 561

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 173/584 (29%), Positives = 263/584 (45%), Gaps = 34/584 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +RW          R   + ++ A+  ++A VL  R + + +  + FL P +  L PDP  
Sbjct: 4   YRWREP------ERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDL-PDPAA 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D  +A   + +    S  +++FGDYDVDG  +  L+ +      +     +P R+ DG
Sbjct: 57  LPDSGRAVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDG 116

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYA 193
           YG     +   +     L++TVDCG+  +DAL+     G+ VIV+DHH           A
Sbjct: 117 YGFQRHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELA 176

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
            V+  R D       L A GV +    L+            N      L LVAL TV DV
Sbjct: 177 FVSVARPDAPPVFRTLSAVGVAYQFARLLL----------GNEAASRWLPLVALGTVADV 226

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS----SPITAENLGYMIGPSINAGG 309
           VPL+G+NR  V  GL         GL+ L     +       +T+ + GY++GP +NA G
Sbjct: 227 VPLVGINRTLVALGLKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAG 286

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ +  L   LL++ D+Q  E LA KL+ LN  R+     ML +AE ++           
Sbjct: 287 RMDDPRLALELLLTADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDALGS---LPP 343

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+V+    W  G+VGL A++L  ++ RP   ++  E     GS RSI+GFDI    + A 
Sbjct: 344 VLVLADSAWSVGLVGLAASKLVSRYARPVVLLA-RESEVSRGSARSIDGFDI--AAALAR 400

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +L+  GGH  AAGLTVE      L     + A   +         ++D  L+   + 
Sbjct: 401 CRDLLIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIA 460

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAIAFRV 548
           +   ++L    PYG GNP P F   + +   I    N  HL+ T  + D    QA+ F  
Sbjct: 461 LETWEVLAQLEPYGHGNPVPRFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWF-- 518

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 E    +R  R+ +   L  + W G +R +L V+D  P 
Sbjct: 519 --EGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRPT 560


>gi|319779401|ref|YP_004130314.1| Single-stranded-DNA-specific exonuclease RecJ [Taylorella
           equigenitalis MCE9]
 gi|317109425|gb|ADU92171.1| Single-stranded-DNA-specific exonuclease RecJ [Taylorella
           equigenitalis MCE9]
          Length = 566

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 158/579 (27%), Positives = 271/579 (46%), Gaps = 29/579 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              + +     A  +  +     ++AR+L +R V+            + L+ +P ++ + 
Sbjct: 5   QIKIRKFNPTIASTLESQ-GFNPLIARILASRGVTDKEQMS---TDWKHLL-NPNLMLNM 59

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           +  A  +  AI   + I+I  DYD DGA + A+ +R L     +A+ Y+P+R   GYG +
Sbjct: 60  EMTASYLADAIEQKKNILIVADYDCDGATACAVAIRGLRMFGYDADFYVPNRAETGYGLS 119

Query: 139 PSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           P L++  + +     LIITVD G  S D ++YA + GI V+V DHH        A +++N
Sbjct: 120 PELIDLVLAQRSKPDLIITVDNGIASVDGVRYANSLGIQVLVTDHHLPGDVLPDALSIIN 179

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDV 253
           PN+         L   GV+F +L+ +    R+  +         + +L+DLVAL TV DV
Sbjct: 180 PNQRGCRFPSKALAGVGVMFYLLIALRTEFRRRGRWQSSNQEPPISNLVDLVALGTVADV 239

Query: 254 VPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311
           V L   NR  V KGL + +     PG+ AL +  + +   +   +LG+++GP INA GR+
Sbjct: 240 VKLDSNNRLLVDKGLSLMKHGKAKPGIIALFQVASCNYAKSTSLDLGFILGPRINAAGRL 299

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + +LG + L++DD +E    A +L+ +N+ R+ +E+ + ++A           Q    +
Sbjct: 300 ADMSLGIKCLLTDDPEEAYAYASELNEINKKRKSIENTIKQEALNGDEYTTFSGQ---SL 356

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429
           +     W+PG++G++A+RLKEK+  PS   +   +    GSGRSI    +  ++      
Sbjct: 357 ISYSKDWNPGVIGIVASRLKEKYWVPSIVFASAGEELIQGSGRSIPDVHLRDVLDLVSKR 416

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
               L K GGHAMAAGLT+           F K   +I        + + DG ++    +
Sbjct: 417 HPNFLTKFGGHAMAAGLTMHAKYLEEFKVAFNKAVIDISGITEFNRIVETDGEIDVVWAH 476

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
           +     +E    +GAG P P+F      +    V+   H ++  E +D    +AI F   
Sbjct: 477 LDTAKEIEKI-VWGAGFPPPLFNDK-FTVLDQTVLKEKHSRLRLE-KDGAEFKAIYFNFA 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
                     +    +     + VN + G +  QL + D
Sbjct: 534 E---------ALPNEVEFLFTMNVNQFNGYESLQLNIQD 563


>gi|187478022|ref|YP_786046.1| single-stranded-DNA-specific exonuclease [Bordetella avium 197N]
 gi|115422608|emb|CAJ49133.1| single-stranded-DNA-specific exonuclease [Bordetella avium 197N]
          Length = 568

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 176/580 (30%), Positives = 272/580 (46%), Gaps = 28/580 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              +    +  +LA+ +   I  ++AR+   R V+         P    L+P P  LT  
Sbjct: 5   RLTVRSPDLPASLAL-EAAGIHPLLARLWAARGVTDPAQTKMAWP---ALLP-PGALTHS 59

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             AA  +  AI   ++++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +
Sbjct: 60  GHAATVLADAIQAGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLS 119

Query: 139 PSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           P++++           +IITVD G  S D +  A   GI V++ DHH        A A+V
Sbjct: 120 PAVVDLAVAHRAGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIV 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253
           NPN+        +L   GV+F +++ +   LR+      +    L +L DLVAL TV DV
Sbjct: 180 NPNQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYAADGGPRLDALSDLVALGTVADV 239

Query: 254 VPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           V L   NR  V +GL+  R  +  PGL+AL           +  +LG+ +GP INA GR+
Sbjct: 240 VKLDANNRLLVTQGLLRMRSGRMQPGLRALFAVAGREPRSASGFDLGFALGPRINAAGRL 299

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + +LG   L +DD  +   +A +LD +N+ RR +E+ M EQ  A    +  D    + +
Sbjct: 300 ADMSLGIACLSTDDEDQALRMARELDAINRERRGIEAEMREQ--AMAAMEAPDAAAGATV 357

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429
            V    WH G+VGL+A+RLKEKF RP+ A +   D +  GSGRSI    +   +      
Sbjct: 358 CVFDPSWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDALDLVSKR 417

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
             G++ K GGHAMAAGLT+    +      F      +       P+ + DG L +   N
Sbjct: 418 HPGLIRKFGGHAMAAGLTLGIDGYAAFAPAFDAAVRELTGRDHFEPLLETDGSLESGYAN 477

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
             +  ML+    +GAG   P+F      ++S R+V   HL+++ E ++ +   AI F   
Sbjct: 478 AEVAGMLQQ-QVWGAGFAAPLFLDE-FIVRSQRLVGEKHLKLSLE-RNGQRFDAIWFGHD 534

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                        + +     L  N W G    QL +  A
Sbjct: 535 EM---------LPEHIQAAYRLEQNVWNGLVSAQLVIEYA 565


>gi|320103888|ref|YP_004179479.1| single-stranded-DNA-specific exonuclease RecJ [Isosphaera pallida
           ATCC 43644]
 gi|319751170|gb|ADV62930.1| single-stranded-DNA-specific exonuclease RecJ [Isosphaera pallida
           ATCC 43644]
          Length = 651

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 179/612 (29%), Positives = 261/612 (42%), Gaps = 47/612 (7%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W  L       R   +      P ++  +L+NR +  +  A+ F N  +  L  DP  L 
Sbjct: 38  WRILRHDRD--RIQELASALKAPMLIGHLLLNRGICDVSAARVFFNDDLLSLH-DPATLP 94

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGY 135
              +AA R+V AI N+  I+I+ DYD DG     ++ R L  C     + YIP R  +GY
Sbjct: 95  GVPEAADRLVHAIRNNRSIVIYSDYDADGVCGAGVLYRILKQCGARRLSYYIPSRFEEGY 154

Query: 136 GPNPSLMEKFIN-------------------------EGAQLIITVDCGSTSYDALQYAT 170
           G N   +                                A L++TVDCG T+    + A 
Sbjct: 155 GLNAEALRTLARQRRETHRNGLEGDRSSLKTSQTSEAHRADLVVTVDCGITAVREAELAR 214

Query: 171 NQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQD 229
             G+++I+ DHH    +   A  +V+P           LC AGV + +   + R      
Sbjct: 215 ELGLELIITDHHHFVGDPPRADVVVHPRLPGSRYPFDSLCGAGVAYKLAWEVARRCYPNS 274

Query: 230 NKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS 289
             + L   L   L LVALATV DV+PL G NR  V  GL +  +   PGL AL+E +   
Sbjct: 275 APLALRRQLDECLALVALATVTDVMPLKGENRIIVQHGLDLMNQDPGPGLAALVELI-AK 333

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
            PIT+  LG+ +GP IN  GR+  +     LLI DD +    +A +LD  NQ R+ +E  
Sbjct: 334 RPITSGVLGFHLGPRINVAGRLESAYKALDLLIGDDPERARSIAQELDQFNQQRQQVERE 393

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           M+E A AK+  Q  D      +VV    WH G+VG++A+RL E F RP+     E DG  
Sbjct: 394 MVEHARAKIERQG-DPATRGGLVVVDPSWHVGVVGIVASRLTEIFHRPTLV-GVERDGLI 451

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GSGRS+ GF +   ++      +    GGH+ AAG  +       L   F  +    + 
Sbjct: 452 SGSGRSVPGFSLYDALASC--RDLFESFGGHSAAAGFKLPANRLADLIQRFDDYCQAHLT 509

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAH 528
                    ID     + + + L+  ++   P+G GN  PV    + K+    +VV    
Sbjct: 510 PTQRKKQILIDAETPLALLTLNLVRWIDRLAPFGLGNREPVLLAHDVKVVDSPKVVGSQQ 569

Query: 529 --LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
             L+       S    AI F+          +   G    +     +N +RG    QL V
Sbjct: 570 STLKFKVCQAGSPVFNAICFKRTDHFAE---ILKPGTTGSLVFQAQLNSYRGQDSVQLEV 626

Query: 587 LDAS-----PVE 593
           LD       PVE
Sbjct: 627 LDFRRPQQDPVE 638


>gi|221194665|ref|ZP_03567722.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium rimae ATCC
           49626]
 gi|221185569|gb|EEE17959.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium rimae ATCC
           49626]
          Length = 1122

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 167/576 (28%), Positives = 266/576 (46%), Gaps = 24/576 (4%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W  L     + +    +QK ++  +VARVLV R   ++  A+ FLNPS+     DP I+ 
Sbjct: 10  WNILPQVPKLEQ--EFSQKLSVNPLVARVLVARGCRTVAEAQKFLNPSLERDWFDPRIIP 67

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             ++AA R+ +AI   + I +FGD+DVDG +S  L+   L     +   YIP R  +GYG
Sbjct: 68  GLNEAADRVQKAIETHQCIAVFGDFDVDGMSSTCLLTLALRDFGADVRPYIPHRFGEGYG 127

Query: 137 PNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
            +   +E+   +    LIITVD G  S   +Q    +GIDV+V DHH+          + 
Sbjct: 128 LSVKALERVLADGAPNLIITVDNGIASAKEVQELVARGIDVVVTDHHEPAELVPQGVPVA 187

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P    +      L  AGV   ++  + R L +           S LD+  L T+ D++ 
Sbjct: 188 DPKLTSEC-PSRELAGAGVALKLVCELGRRLGK------PEVWRSYLDIATLGTLSDMML 240

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGES 314
           L   NRA V  G+        PGL AL    N        + L + I P +NA GR+G +
Sbjct: 241 LNSENRALVSAGIRQIHAGKRPGLVALAAAANQDISEVRADELPFSIIPRLNAAGRMGST 300

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            L   LL+SDD QE  +LA KL+ +N NRR +ES +  +A  +          A  IV+ 
Sbjct: 301 ELALDLLLSDDIQEATVLAGKLEEINANRRTIESQLTNEALLQAQET---YDGARAIVLA 357

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ WH G+ G++A+R+  ++  P    +  E+G   GSGRS+   D+   V       +L
Sbjct: 358 GEGWHEGVKGIVASRVVNRYHVPCILFT-VEEGIARGSGRSVGSVDLFHAVEEC--SDLL 414

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           ++ GGH  A G+T++                + +PA       ++  ++  S +N A +D
Sbjct: 415 IRFGGHQGAVGVTLKAEKIDEF-RHRLSEVLSQLPAKDFESTGEVSALVTLSEINAASLD 473

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553
            LE   P+G GN  P+FA     +++        + + F + D   ++ +I FR    P 
Sbjct: 474 ALEVLQPFGQGNKKPLFAVQGVTMKNRNRAGAGGIHLCFMASDGVSSVASIMFRA---PH 530

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            +      G  + +        W+G  + +L V D 
Sbjct: 531 IDVAANYDGA-VDIVFEAVNETWQGRTKPKLMVKDI 565


>gi|315924146|ref|ZP_07920372.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622548|gb|EFV02503.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 691

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 166/577 (28%), Positives = 273/577 (47%), Gaps = 22/577 (3%)

Query: 18  WVSLLGQ--EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           W     Q  E   +   I +   +P  VAR+ ++R     + A  +L P+      DP +
Sbjct: 6   WKLRQPQSSESEAQIEEIAEICNVPKAVARIALSRGCEDAEAAMAYLEPNPEDFH-DPWM 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D   A  R++QA    +K+ ++GDYDVDG  +V++++++L    ++    IP+R+ +G
Sbjct: 65  LPDMRLAVTRLLQAKALKQKVCVYGDYDVDGTTAVSMLLKYLGEMGLDVCFKIPNRLTEG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +     +G +LI+TVD G  + D +  A   GIDVIV DHH+ + +   A A+
Sbjct: 125 YGMNAPAVRTLAADGVKLIVTVDNGIAAKDEILLANALGIDVIVTDHHECQGDLPEALAV 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++  R D       LC AG+   ++  +      D       DL   ++  A+ATV D+V
Sbjct: 185 IDAKRPDSAYPFSELCGAGIALKLIQALQMAEGTD------ADLREYIECAAMATVADIV 238

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL   NR  V  GL              ++ V+    +TA N+GY++ P INA GR+G +
Sbjct: 239 PLQDENRLIVRLGLTSMNEDCQNPGIKALKIVSDIEMVTAGNVGYVLAPKINAAGRLGVA 298

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +    L    D+  +   A  L   N+ R+ +E  + +QA A V  Q   + Q   I+  
Sbjct: 299 DRVVDLYTGTDAAAITAAASFLKDENEKRQAIEKDIYDQAYAAV--QSKKLDQNVFILTA 356

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
           G+ WH G++G++A+RL+E +  P   +  ++DG   GS RS+EG ++ + +S      + 
Sbjct: 357 GEGWHSGVIGIVASRLQETWYHPVIVVGIDDDGMARGSCRSVEGINVFEALSSC--ASLF 414

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
              GGHAMAAG ++ + N   L      +A +   A         DG L +  ++ AL+D
Sbjct: 415 ETYGGHAMAAGFSIRKENIAELTKRLAAWATDNGAAAHLKKTIYYDGDLTSRDLDWALMD 474

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
            L +  PYG  NP PVF F       +R +      ++F   ++     IAF       G
Sbjct: 475 GLATCEPYGVANPGPVFQFAATAPSDVRAMGKDGAHLSFRLGNTR---CIAFGA-----G 526

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +    +    +       +N++RG    +L V D  P
Sbjct: 527 DQAAAAVRGTLRFLAAPKINHFRGKDNIELVVRDLKP 563


>gi|310778376|ref|YP_003966709.1| putative exonuclease, RecJ [Ilyobacter polytropus DSM 2926]
 gi|309747699|gb|ADO82361.1| putative exonuclease, RecJ [Ilyobacter polytropus DSM 2926]
          Length = 571

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 148/578 (25%), Positives = 277/578 (47%), Gaps = 22/578 (3%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76
           W         +   + +++  +   ++R+L+NR ++ +   KDFLNP I     DP    
Sbjct: 3   WEY--SDVAESLVDSKSKEWHVSKCLSRLLLNRGINTEDRLKDFLNPHIDKFR-DPFDFE 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             ++  ++I+ A    EKI I+GDYDVDG  +   ++       ++ + YIP+R+ +GYG
Sbjct: 60  RMNEVVKKIIDAKRKGEKIFIYGDYDVDGITAATFLVLVFRQIGIDVDYYIPNRMEEGYG 119

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +   +    ++  +L+ITVD G  S + +QYA   GIDVI+ DHH++  E+     L+ 
Sbjct: 120 LDRKAINYINDKNGKLVITVDTGVNSIEDVQYANKLGIDVIISDHHKIIKEKGDEQLLII 179

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
             +  +      L  AGV   V   +Y  L ++        L   +D+V + TV DVVP+
Sbjct: 180 NPKFSEKYQFKFLAGAGVALKVAQAVYITLGEN-----LDKLYQYIDIVMIGTVADVVPM 234

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315
           I  NR  + KGL V ++    GL  L++ +   +  IT  ++ + I P +N+ GRIG S 
Sbjct: 235 IDENRIIIRKGLEVIKKTKVKGLVYLMKYLRLQNKDITTTDVSFFISPLLNSLGRIGTSK 294

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           +G+   I++D  E+  +  ++   N+ RR +E  +  + + ++  Q    +    + ++ 
Sbjct: 295 VGADFFINEDDFEIYNIIEEMKKSNKKRRELERTIFNEIDEEI--QKMKDKNFKYLFLKS 352

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
            +WHPG++G++++RL  K+  P   ++ ++ G G  S RSIEG +I            L+
Sbjct: 353 SKWHPGVIGVVSSRLSIKYHVPVVLVAVKD-GIGKASCRSIEGINI--FNILREMADKLL 409

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGH +A+G      N   +    +     +          KIDG  +   ++  ++  
Sbjct: 410 RFGGHDLASGFIARTSNLDEIEKRLKGCL-EVPGKKKEIKTLKIDGTFSIENIDENILTD 468

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L+   PYG  N +P+F     + ++++       H + TF  ++ +   A+AF +     
Sbjct: 469 LQQVSPYGLENEHPIFLDEGLEFENLKKFGVENRHFK-TFIKKNGKRYSAVAFDLGSKID 527

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            E   + +  R  +  +    Y++G +  Q+R+ D   
Sbjct: 528 EE---EYKLLRFDIAYYPEKVYYKGDETLQIRIKDFKV 562


>gi|257784324|ref|YP_003179541.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum
           DSM 20469]
 gi|257472831|gb|ACV50950.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum
           DSM 20469]
          Length = 1120

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 155/585 (26%), Positives = 273/585 (46%), Gaps = 25/585 (4%)

Query: 8   GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIR 66
           G+E S    RW  L     +       ++  +  +VARVLV R  +    A++FL+PS++
Sbjct: 3   GIEKST---RWSVLTQDVYLESLFE--KELHVTPLVARVLVARGFTDVAEAQEFLSPSLQ 57

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
               DP  +    + A R+ +AI   +KI +FGD+DVDG +S  L+   L     +   Y
Sbjct: 58  RDWLDPQCIPGMAEVANRVQKAIVEQQKIAVFGDFDVDGMSSTCLLTLALRRLGADVLPY 117

Query: 127 IPDRIVDGYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           IP R  +GYG +   + +  ++    LIITVD G  +   + +   QGIDV++ DHH+  
Sbjct: 118 IPHRFGEGYGLSKEALARVLLDRKPDLIITVDNGIAAAQEVAWLLEQGIDVVITDHHEPA 177

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                   + +P  ++D      L  AGV   ++ ++ ++  Q          L  +D+ 
Sbjct: 178 DLVPQGVPVTDPKLIEDC-PSRELAGAGVALKLVQVLGQLQNQPQLW------LDYIDVA 230

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPS 304
            L T+ D++ L   NRA V +G+   ++   PGL AL          I+A+NL + I P 
Sbjct: 231 MLGTLSDMMMLNKENRALVSEGVKRLQKGLRPGLVALAAVAGQDIAQISADNLPFSIIPR 290

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GR+G +++   LL+++D++E  +LA KL+ +N  RR +E+ + ++A  +       
Sbjct: 291 LNAAGRMGTTDIALDLLLTEDAEEATILAGKLEEINAERRAIEAKLTDEALEQAKEI--- 347

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                 IV+  + WH G+ G++A+R+  ++  P    + ++ G   GSGRS+   D+   
Sbjct: 348 YDGGHAIVLAKEGWHEGVKGIVASRIVNRYHVPCILFTIQD-GVARGSGRSVGSVDLFHA 406

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           V       + V+ GGH  A G+TVE            +     +P        ++  ++N
Sbjct: 407 VEQC--ADLTVRFGGHQGAVGVTVETSKIDAFRKRLSEVMAE-LPEEEFESSGEVTALVN 463

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
              + I  ID LE+  P+G GN  P+F      +++   V      + F + +  +  + 
Sbjct: 464 LDEITINSIDALEALQPFGQGNKKPLFGVKGVVMKNRSRVGAGGAHLCFMASNGISSISS 523

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              ++ TP  E   +  G  + +        W+G  + +L V D 
Sbjct: 524 I--MFRTPHVEAAAEYDGA-VDLIFEAVNETWQGRTKPKLMVRDI 565


>gi|257439395|ref|ZP_05615150.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium
           prausnitzii A2-165]
 gi|257198270|gb|EEU96554.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium
           prausnitzii A2-165]
          Length = 713

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 185/556 (33%), Positives = 295/556 (53%), Gaps = 25/556 (4%)

Query: 42  IVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           ++A +L  R ++    A   L+      + DP++LTD DKA  RI+ AI   E I++FGD
Sbjct: 63  LLAGILAARGITDPAEALTLLSG--EEELTDPMLLTDMDKACARILDAIDREETIVVFGD 120

Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160
           YDVDG  + AL+ + L     N    +P R  DGYG + + ++   ++G QLI+TVD G 
Sbjct: 121 YDVDGVTATALLYQHLKGMGANVKCMLPSREGDGYGLSKNAIQSIHDKGCQLIVTVDNGI 180

Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220
           ++ +  ++A + G+D+IV DHH        A A+V+P R DD S    LC AGV F +  
Sbjct: 181 SALEEAEFAASLGVDLIVTDHHLPHDTLPKAVAVVDPRRADDTSPFKGLCGAGVAFKLCA 240

Query: 221 LIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLK 280
            +       +  P    L    DL A+ TV DV+PL G NR  V  GL + +    PGL 
Sbjct: 241 AL-------DGCPPEEMLDYCGDLAAVGTVADVMPLTGENRTLVKAGLHLLQHSDRPGLL 293

Query: 281 ALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339
           AL++ V     P+TAEN+ Y I P INA GR+  +    +L++ +D +    LA KL+ +
Sbjct: 294 ALLDEVGLGGKPVTAENVSYAIAPRINAAGRMDSAVTALQLVLCEDEERAAELAHKLNEI 353

Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
           N  R+  E  + + A+A++  +   ++   VI++ G  WHPG++G++A+RL EK GRP  
Sbjct: 354 NAARQETEGEIAKAAQAQLEAEPAILEDR-VILIWGRDWHPGVIGIVASRLVEKTGRPVI 412

Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
            +S +E G+G GSGRS++GF++   ++    E +L++ GGHAMAAGL+V   N   L   
Sbjct: 413 VVSIDEHGEGKGSGRSVQGFNLHACIASC--EDLLLRFGGHAMAAGLSVREENLPELRRR 470

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
             ++A    P ++ TP  + D  ++   + +  +  L+   PYGA NP PVF      ++
Sbjct: 471 LNEWAARECP-VLVTPPLECDLSIHLDRITVESVRRLDQLAPYGAENPAPVFLLEKAVVE 529

Query: 520 SIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578
            +  V+   H ++    Q +  + A+ F +      E L  + G  +     L V  +  
Sbjct: 530 GVYPVSEGRHCRLRLR-QGNACIYAVWFGM----HPEQLPYATGDVVDAALSLSV--YEA 582

Query: 579 SKRCQL--RVLDASPV 592
           ++  QL  R+L+  P 
Sbjct: 583 ARGAQLSGRILELHPA 598


>gi|307260941|ref|ZP_07542625.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869380|gb|EFN01173.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 524

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 166/508 (32%), Positives = 255/508 (50%), Gaps = 15/508 (2%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 20  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   P P+
Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           F     K+   R++   HL++  E    
Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFG 522


>gi|291557491|emb|CBL34608.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium siraeum
           V10Sc8a]
          Length = 672

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 168/578 (29%), Positives = 278/578 (48%), Gaps = 27/578 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W+          A+ +     +P ++  +LV R + + + A+ + N +    + DPL+
Sbjct: 2   KKWLVRNTDN--ALAMKLKTDTGLPMLLCSLLVGRGIYTAEQAQQYFNGT---ELSDPLL 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA + I +A+ N  KI ++GDYD DG  S  ++   L     + N YIP R  +G
Sbjct: 57  IADMDKAVQAIEEAVDNEVKITVYGDYDCDGVTSTVMLYTHLDAIGADVNWYIPTR-EEG 115

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + + K   +G  LIITVD G ++ +  +     G+ ++V DHHQ+      A A+
Sbjct: 116 YGLNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAI 175

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP+R DD S    L   GV   +++ + R         +   L    DL A+ T+ DVV
Sbjct: 176 VNPHRQDDSSPYKELAGCGVALKLIMALER--------DVEGVLEQYADLAAIGTIGDVV 227

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V +GL+  +   N GL+ALI    +    IT+  + + + P INA GR   
Sbjct: 228 ALTGENRIIVKRGLLEMQYSENQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDS 287

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
               + LL++   Q  E+ A +L+ LN  R+ +ES +LE A+A++++       + V++V
Sbjct: 288 PKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQLISDPKAF-NSRVLIV 346

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ W+ GI+G+++ARL E + +P   I   E  +  GS RSIEGF +   +    E   
Sbjct: 347 CGEGWNHGIIGIVSARLLELYEKPCIVIG-IEGDEARGSARSIEGFSLYTALDACSEH-- 403

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG ++ +          + +A    P+ +     + D     S + I+ I
Sbjct: 404 LTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKFPS-MPVMTTEADIEPELSDLEISSI 462

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
           + L    PYG  N  P+F   N  + S R +    +   T E + S+  + + F      
Sbjct: 463 ENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKYTSFTAEYKGSQ-FKFLCFGTSFDK 521

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            G +     G ++ V  H+ +N +   K   +RV D  
Sbjct: 522 FGYY----PGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555


>gi|167758794|ref|ZP_02430921.1| hypothetical protein CLOSCI_01136 [Clostridium scindens ATCC 35704]
 gi|167663534|gb|EDS07664.1| hypothetical protein CLOSCI_01136 [Clostridium scindens ATCC 35704]
          Length = 586

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 161/600 (26%), Positives = 281/600 (46%), Gaps = 42/600 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
           +WV L           I ++  I   +A ++ NR+ +  +    +LN +I  L  D +++
Sbjct: 3   QWVLLRKGADF---EGIGKRFQISPRLACLIRNRDVIGDEAIAQYLNGTIADLY-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I   ++I + GDYD+DG  +  +++  L      A+  IP R+ DGY
Sbjct: 59  KDMDKAVDILREKIAEQKRIRVIGDYDIDGVNATYILLEGLEKLGAEADSDIPSRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N  L+E+   +G   IIT D G  + + +      G+ ++V DHH+V  EE       
Sbjct: 119 GLNIELIERAYQDGIDTIITCDNGIAAAEEIACGKRLGMTIVVTDHHEVPFEEEEDGKKY 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              PA A+++P +         LC A + + ++  ++     D       DL  L++ VA
Sbjct: 179 LLPPADAVIDPKQPGCEYPFKGLCGAAIAYKLVEALWEATGGD-----AEDLDYLIENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +ATV DV+ L   NR +V +GL + +R  +PGL++LI    +    I A ++G+++GP +
Sbjct: 234 IATVGDVMELENENRIFVKEGLQMLKRTHSPGLRSLIACTGVDKDRIGAYHIGFVLGPCM 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +   +E ++LA  L  LN +R+ M    +EQA   V T     
Sbjct: 294 NASGRLDTAKRTLNLLRAKSGKEADILAGDLKALNDSRKEMTDIAVEQARQIVDT--TKA 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
            +  V+V+     H  + G++A R++E++ RP+  ++  E+G   GSGRSIE +++ + +
Sbjct: 352 GKDRVLVLYLPGCHESLAGIVAGRIRERYYRPAIILTDAEEGI-KGSGRSIEAYNMYEEL 410

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           S      +L K GGH +AAG+++ + N   L           +          ID  L  
Sbjct: 411 SRC--RDLLTKFGGHKLAAGMSLAKENIEELRRTLNDNCR--LEPKDMAEKVVIDMELPF 466

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543
           S V   L++ L    P+G GN  PVFA  N +L S R++      L++  +       +A
Sbjct: 467 SCVTEELVEELTLLEPFGKGNTKPVFAARNVELISGRILGKNRNVLKLQVKDSSQTAREA 526

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVT-------------GHLCVNYWRGSKRCQLRVLDAS 590
           + FR     L     +   + + +               +  +N + G +  Q+ +    
Sbjct: 527 VCFRGAEQMLSLLEERYGKEAVDLLMKGRGGQMKLSVTYYPDINEYMGKRTVQIVITHYQ 586


>gi|229816635|ref|ZP_04446924.1| hypothetical protein COLINT_03684 [Collinsella intestinalis DSM
           13280]
 gi|229807763|gb|EEP43576.1| hypothetical protein COLINT_03684 [Collinsella intestinalis DSM
           13280]
          Length = 1126

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 154/577 (26%), Positives = 251/577 (43%), Gaps = 24/577 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           RW        +     +     +  +VAR++V   +  ++  + FL PS+     DP I+
Sbjct: 21  RWCIAPNNPELE--ERLASALGVAPLVARIMVAHGIGGVEEGRLFLTPSLERDWADPHII 78

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               + A R+ +A+ + E I +FGD+DVDG  S  L+   L       + +IP R  +GY
Sbjct: 79  PGMAEVAARVERAVRDGEVIAVFGDFDVDGITSTCLLTEALRQLGACVHPFIPHRFEEGY 138

Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G     +++ +      L+ITVD G  + D +     +GID++V DHH+          +
Sbjct: 139 GLTAQALDRVVEACEPSLVITVDNGIAARDEVVALAGRGIDIVVTDHHEPSDLVPVGIPV 198

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            +P  +D+ S    L  AGV   ++ ++   L Q           S  ++ AL TV D++
Sbjct: 199 TDPKMVDE-SPSRELAGAGVALKLVQILGERLGQPQLW------RSYTEVAALGTVSDMM 251

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
            L   NRA V  G+   R    PG  AL             + L + + P +NA GR+ +
Sbjct: 252 CLTPENRALVADGIAHMRATARPGYIALAAVTRTDLSTITADALSFSLIPRLNAAGRMAD 311

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   LL++ D+ E   LA  L+ +NQ RR +E+ +  QAE               IVV
Sbjct: 312 PTLALDLLLARDAVEAGRLAAALEEINQQRRAIEAELTGQAEELAER---SYDGGRAIVV 368

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G+ G++A+RL  ++  P+   S  EDG   GSGRS+   ++ + V       +
Sbjct: 369 GGEGWHEGVKGIVASRLVNRYHVPALLFS-IEDGVARGSGRSVGSVNLFEAVEKC--SDL 425

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHA A G+T    N   L D       + +PA       +I   +    ++I  I
Sbjct: 426 LIRFGGHAGAVGVTCAVENLDALRDRLNAVLAD-LPAEDFEDRGEIAATVGLDELDIETI 484

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTP 552
             +    P+G GN  P+ A     +    VV      M F + D   ++ AI FR     
Sbjct: 485 RQIGMLEPFGQGNRVPLLAARGVTMCDRAVVGKTGDHMRFIATDGAASVPAIMFRAPEVE 544

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                + +    + +        W+G  + +L V D 
Sbjct: 545 ----QLVNCDTVVDLVFEAVAECWQGRVKPKLMVKDI 577


>gi|299136982|ref|ZP_07030165.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp.
           MP5ACTX8]
 gi|298601497|gb|EFI57652.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp.
           MP5ACTX8]
          Length = 609

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 172/599 (28%), Positives = 278/599 (46%), Gaps = 32/599 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +WV          A  + ++  +P  +A +LV R + ++  A+ FL PS+  L  DP ++
Sbjct: 11  QWVVAGKVSD--TAKQLERELGLPPAIACLLVCRGIETVAAARAFLAPSLDQLH-DPSLM 67

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR----FLSHCS--VNANMYIPD 129
              DKA  R+  A+   E ++I+GDYDVDG  +  L+        +      +   +IP 
Sbjct: 68  LGMDKAVARLRTALLLQEPVLIYGDYDVDGTVATVLLKTAAERAAAAMGVTADIRYHIPH 127

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SE 187
           RI +GYG     +E    EG +LI++VD G  ++ A + A   G+D+IV DHH       
Sbjct: 128 RIREGYGMQELRIEAAAAEGVRLIVSVDTGIRAFAAAEEAERVGLDLIVTDHHLPDGAEG 187

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDL 244
              A A+VNPN+         LC A V F +   +     Q     L      L S L L
Sbjct: 188 VPRAVAVVNPNQPGCEYPYKELCGAAVAFKLAQALLESSVQQEDERLRLREKTLPSFLKL 247

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIG 302
           +A+AT+ D VPL G NR     GL+  R+    GLKAL+E   I +   I+A ++G+ + 
Sbjct: 248 LAIATIADAVPLTGENRVIAALGLLELRKPSQAGLKALMELSQIDTSRAISATDIGFRLA 307

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P INA GR+  ++    + ++ D      LA KL  LN+ RR  E+  L + E ++    
Sbjct: 308 PRINAAGRMDIASDVVEMFLTRDPAMARTLAEKLHRLNEERRTTEAEALREIEERLAVMV 367

Query: 363 DDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
              +  A+ +V++   WH G++G+LA+R+ ++ GRPS  ++  E+G+  GSGRS+ GF +
Sbjct: 368 ASPEGLAACLVLDDPAWHRGVIGILASRVVDRTGRPSLVLA-HEEGQAYGSGRSVAGFHL 426

Query: 422 GKMVSFAVEEGI---LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
              ++    E       + GGHA A G ++       L +   ++A +   A        
Sbjct: 427 LDALTSIDTEEDTQLFARFGGHAHAVGFSLPSSQVEDLRNRMARYAASKRTADDEITKLD 486

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFES-Q 536
            D  L    +    +  LE  GP+G GN  PVF     +L  + +VV   HL++T E   
Sbjct: 487 CDLELRLGEITADFLVALEQLGPFGNGNSEPVFLSYGVRLGIAPKVVKDRHLRLTVEDPD 546

Query: 537 DSETLQAIAFRVYGTPLGEFLMQS--RGKRMHVTGHLCVN---YWRGSKRCQLRVLDAS 590
           D   L  +A+            +   +G  + +   L  N    + G    +L ++   
Sbjct: 547 DGSRLGGMAWGRRTDWAARAREEGWVQGSLLDLVYRLRRNWHPDFGG---WELEIIAIR 602


>gi|240142185|ref|YP_002966695.1| Single-stranded-DNA-specific exonuclease protein [Methylobacterium
           extorquens AM1]
 gi|240012129|gb|ACS43354.1| Single-stranded-DNA-specific exonuclease protein [Methylobacterium
           extorquens AM1]
          Length = 614

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 222/586 (37%), Positives = 314/586 (53%), Gaps = 28/586 (4%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           E S+ G RW       G++    +     +P  +A   + R V+    + F  P +R  M
Sbjct: 45  ETSLRGNRWSVPNEFAGVDPHDPLF----LPKQIA---LMRGVAPSALETFFKPMLRTSM 97

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIP 128
           PDP  L D D A  RI +A+   E + + GDYDVDGA S A+M+R+L     + A  YIP
Sbjct: 98  PDPSSLADMDAATARIAEAVRRGETVGLLGDYDVDGATSTAIMLRWLGSAGHDKAVYYIP 157

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE- 187
           DRI +GYGPNP  ++     GA L++ +D G+ ++  + +A  +G+DV+V+DHH+     
Sbjct: 158 DRIREGYGPNPGAVDAIAEAGATLLLVLDSGTLAHGPIAHARARGMDVVVVDHHEPSRTL 217

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLD 243
            +P   LVNP R DD SGQ +LC AG+ FL+ V + R+LR +           D + LL 
Sbjct: 218 PLPDAILVNPKRPDDASGQTNLCTAGLAFLLAVSLNRLLRAEGYFDQAGIAPPDPMDLLG 277

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           L AL TV DVVPL GLNRA VV+GL   +   NPG++AL+E        T    G++ GP
Sbjct: 278 LAALGTVADVVPLTGLNRAIVVQGL--PKLDRNPGIRALVEETG-EGEFTPRTAGFVFGP 334

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GRI ++ LG+ LL SDD  E   LA  L  +N  R+ M+  M+E A A+      
Sbjct: 335 CINAAGRIDDTRLGTLLLASDDPGETRDLARHLREINAQRQAMQKEMVEAAVARA--LSA 392

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           +     VIV+E   WHPGIVGL+AAR++E   +P+  +     G    S RS++GFD+G 
Sbjct: 393 EFADDPVIVIEDRAWHPGIVGLVAARVREATDKPAVVVGEFGKG----SCRSVDGFDMGT 448

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +  A E+GIL+ GGGH MAAGLT+E      L  F    A          P  ++D V 
Sbjct: 449 AIIRAREQGILIAGGGHRMAAGLTIEAGRLEELRRFVCGAAF-----DFERPPTEVDVVA 503

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
            A   ++  I  LE+  PYGAGN  P  A      + +R++   HL++  E     T +A
Sbjct: 504 EAGTASVEAIAPLEALAPYGAGNQQPAVAVVGGIARRVRILKERHLKLMLEGPSGST-EA 562

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           I F   GT LG+ L  S G  + V G + V+ +    R Q+++ DA
Sbjct: 563 ILFNAVGTRLGDALAASEGLPVDVLGRMAVDEFNAQARVQIKIDDA 608


>gi|89902003|ref|YP_524474.1| single-stranded-DNA-specific exonuclease RecJ [Rhodoferax
           ferrireducens T118]
 gi|89346740|gb|ABD70943.1| single-stranded-DNA-specific exonuclease RecJ [Rhodoferax
           ferrireducens T118]
          Length = 576

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 171/589 (29%), Positives = 265/589 (44%), Gaps = 34/589 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
             L+ +     A A+ ++  I  ++A++   R V    +   L+  +  L+  P  +   
Sbjct: 2   KILVREIPPRSAWAL-EQAGIHPLLAQLYAARGV---QSVQELDDGLTRLIA-PTEMLGL 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137
             AA  +  AI   + + I  DYD DGA + A+ +R L        +  +PDR+VDGYG 
Sbjct: 57  SAAATLLADAIAADQTLCIVADYDCDGATACAVGIRGLRLLGAKHVSYIVPDRVVDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-----IPAY 192
              + E+    GA ++ITVD G  S++ +  A   G+ V+V DHH   S +       A 
Sbjct: 117 TSPISERVKASGADVLITVDNGIASFEGVATARALGLQVLVTDHHLPASRDGQIVLPEAD 176

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATV 250
            +VNPN+         +   GV+F VL+ +   LRQ           L +LL LVAL TV
Sbjct: 177 VIVNPNQPGCTFASKSIAGVGVMFYVLLALRAELRQRGVFHAATQPKLDALLPLVALGTV 236

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPG--LKALIERVNISSPITAENLGYMIGPSINAG 308
            DVV L   NR  V +GL   R    P       +     +   T  + G+ +GP INA 
Sbjct: 237 ADVVKLDANNRRLVAQGLKRVRALMLPTGLASLFVAAGRDAQVATTFDFGFALGPRINAA 296

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ- 367
           GR+ +  LG   L++DD+     LA  LD +N+ RR +E +M EQA A   +  DD ++ 
Sbjct: 297 GRLSDMTLGIECLLTDDAARGLELAKALDGINRERREIEGSMREQALAVAESLFDDNEEA 356

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGK 423
              I V    +H G+VG++A+R+K+K  RP+F  +  +    + +  GSGRSI GF +  
Sbjct: 357 PPAICVFDPDFHEGVVGIVASRIKDKLHRPTFVFAQSKAPGREHELKGSGRSIPGFHLRD 416

Query: 424 MVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            +        G+L++ GGHAMAAG T+   +F        + A   + A         DG
Sbjct: 417 ALDLVAKRHPGVLLRFGGHAMAAGCTIAVEDFDAFEQSLSQVAREWLDAATLMRRLDTDG 476

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541
            L      + L+D L     +G G   P F     ++ S R+V   HL +  + Q  + +
Sbjct: 477 PLKPEYRRVELVDALHK-EVWGQGFAPPTF-SEEVEVLSQRLVGEKHLALKLKHQ-GQPV 533

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             I F                 R+ +   L  + W G +R +  V  A 
Sbjct: 534 DGIWFGHTE---------PLPARVKLAFRLDADAWNGVRRVRFLVEAAQ 573


>gi|167957482|ref|ZP_02544556.1| single-stranded-DNA-specific exonuclease RecJ [candidate division
           TM7 single-cell isolate TM7c]
 gi|169836046|ref|ZP_02869234.1| single-stranded-DNA-specific exonuclease RecJ [candidate division
           TM7 single-cell isolate TM7a]
          Length = 548

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 176/557 (31%), Positives = 280/557 (50%), Gaps = 27/557 (4%)

Query: 45  RVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
           ++L +RN+  D    FL+P   L   DP +L D  KA  RI  A    EKI+I+GDYDVD
Sbjct: 6   KILASRNIDKDKLNSFLSPDYDLEKGDPYLLPDMQKAVDRIKTAYEKGEKIVIYGDYDVD 65

Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           G ++ AL++         +   +IP+R V+GYG     ++K  +  A LIITVDCGS  +
Sbjct: 66  GISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIITVDCGSLCH 125

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           + + YA + GID +V DHH V     PA A VNP     L     L   GV F ++  + 
Sbjct: 126 NEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVAFKLVQALQ 185

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
           + L    +    +    LLDLVAL TVCD+V L G NRA V  G+ V ++Q   GLKAL+
Sbjct: 186 KELDGLPEGYEKW----LLDLVALGTVCDIVKLTGENRANVYWGIEVMKKQRRTGLKALM 241

Query: 284 ERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
              NI    I+A+ LG++ GP INA GR+  ++L   +LIS +  +    A  +D LN +
Sbjct: 242 AVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGDDALNKANYIDNLNSH 301

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           RR M+  + ++A         D +   V+V+ G  W+ GI+G++AA++ EKF +P + ++
Sbjct: 302 RRQMQDDIFKEA----CKIALDYKDDDVLVINGKNWNHGIIGIVAAKILEKFKKPVYILA 357

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             ++G+  GS RS    D     +    + I++KGGGHA AAG+T++            +
Sbjct: 358 ENDNGETKGSARSFG--DFSAADAVRAADDIIIKGGGHAAAAGVTLKNDKISDFRQRVNE 415

Query: 463 FAHNIVPALI-----TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
           F +++               +ID   + S +N  L+  + +  P+G GNP PV       
Sbjct: 416 FYNSLQLNNQERYLLPKADVEID---DFSEINEDLVGKIATMEPFGNGNPEPVIKITAAD 472

Query: 518 LQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           + +++ +     H++++    D   ++ +AF        E  +   G    +     +N 
Sbjct: 473 IVNVQHMGTDGQHIKLSARDSDGVVIRMLAFNA-----PENFLCKPGDTASIWFRPVINK 527

Query: 576 WRGSKRCQLRVLDASPV 592
           W+G +  +  +L    V
Sbjct: 528 WQGIRSVEGELLHLQLV 544


>gi|91786912|ref|YP_547864.1| single-stranded-DNA-specific exonuclease RecJ [Polaromonas sp.
           JS666]
 gi|91696137|gb|ABE42966.1| exonuclease RecJ [Polaromonas sp. JS666]
          Length = 600

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 173/615 (28%), Positives = 268/615 (43%), Gaps = 60/615 (9%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              +         A+ Q   +  ++A++   R V      D L+  +  L+P P  L   
Sbjct: 2   KIQVRDVPPRSVWALQQG-GVHPLLAQLYAARGVRS---MDELDDGLGKLLP-PASLRGT 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137
            +AAR +  A+   +KI +  DYD DGA + A+ +R L      N    +PDR++DGYG 
Sbjct: 57  REAARLLADAMAAGQKICVVADYDCDGATACAVALRGLRLLGAQNVGYLVPDRVIDGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY----- 192
            P + E+    GA +++TVD G  S + +  A   G+ V+V DHH    ++         
Sbjct: 117 TPPIAERVKATGADVLVTVDNGIASLEGVARAKALGMQVLVTDHHLPALKDGQVVLPAAD 176

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP------------------- 233
            +VNPN  D       +   GV+F VL+ +   LR+                        
Sbjct: 177 VIVNPNHPDCSFESKSMAGVGVMFYVLLALRAELRERGVFGRPAAGPPPGGTAPSGGSTA 236

Query: 234 ---------LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG--LKAL 282
                        L +LL LVAL TV DVV L   NR  V +GL   R    P       
Sbjct: 237 HEVASVGAIPQPKLDTLLPLVALGTVADVVKLDANNRRLVAQGLKRIRAGALPAGLAGLF 296

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
                 ++  T  + G+ +GP INA GR+ +  LG   L++DD+   + LA  LD +N+ 
Sbjct: 297 TAAGRHAALATTFDFGFALGPRINAAGRLSDMTLGIECLLTDDAARADELARMLDGINRE 356

Query: 343 RRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401
           RR +E+ M EQA+       D D +    I +    +H G+VG++A+R+K+K  RP+F  
Sbjct: 357 RRDIEAGMREQAQLAADAMIDEDEEPPPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVF 416

Query: 402 ----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGR 455
               +  ++ +  GSGRSI GF +   +        G+L++ GGHAMAAG T+    F +
Sbjct: 417 AASQAPGKEHELKGSGRSIAGFHLRDALDLVAKRHPGVLLRFGGHAMAAGCTIAEERFEQ 476

Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
                Q+ AH  + A   T     DG L A      ++D L     +G G   P F    
Sbjct: 477 FEQALQQVAHEWLDAATLTRRLDTDGPLPAEYRRTDVVDTLHR-EVWGQGFAAPTF-SEE 534

Query: 516 HKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
            ++ S R+V   HL +  + Q  + +  I F             +   R+ +   L  + 
Sbjct: 535 VEVVSQRLVGEKHLALKLKHQ-GQPVDGIWFGHTT---------ALPARVKLAFRLDADE 584

Query: 576 WRGSKRCQLRVLDAS 590
           W+G KR +  V  A 
Sbjct: 585 WQGVKRVRFLVEAAE 599


>gi|317122081|ref|YP_004102084.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter
           marianensis DSM 12885]
 gi|315592061|gb|ADU51357.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter
           marianensis DSM 12885]
          Length = 818

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 183/580 (31%), Positives = 267/580 (46%), Gaps = 25/580 (4%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74
           G RW           A  +     +  + ARVL  R  +       L    R  + DP  
Sbjct: 3   GRRWRVRPASP--EAAARLVDALGVTPLTARVLAARGWTDVAVARQLLRG-RPPLHDPFR 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132
           L D   A  RI +A+   E I+I GDYD DG A+ AL+ R L          +YIPDR  
Sbjct: 60  LPDMAAAVDRIRRALARGEGILIVGDYDADGVAAAALLYRGLLDLEPDARVQVYIPDRHR 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG     ++     GA L+ITVD G  ++  L  A  +G+DVIV DHHQV+    PA 
Sbjct: 120 EGYGVPVGALDAATTMGAGLLITVDNGIAAHGPLAEARRRGLDVIVTDHHQVQDTLPPAL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A++NP+R D       LC AGVVF +L  +   L  +   P+ + L       A+ATV D
Sbjct: 180 AVINPHRPDSGYPWRGLCGAGVVFKLLQAL---LGDEPASPVWWQLA------AVATVAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311
           VVPL+  NRA V +GL        PGL AL E   +  + + A  + +++ P +NA GR+
Sbjct: 231 VVPLLDENRALVQRGLEELAAAPLPGLAALAEAAGLGDTRLDAHGVAFILAPRLNAAGRM 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G +     LL +DD      LAM ++ LN+ RR  E   L QA  +V  + + +    VI
Sbjct: 291 GSAWQAWELLATDDLGRARALAMAIEQLNRLRRQQEELALGQALQRV-ERGEGVYGDEVI 349

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
            +    WH G++G++A+RL + F RP+      +D +  GSGRSI GF + + ++     
Sbjct: 350 ALAHPTWHQGVLGIVASRLVDLFHRPALV-GRRQDHRITGSGRSIAGFHLFRALAAC--A 406

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +  + GGHA AAG T+    +  L       A   +      P   +D V+    + +A
Sbjct: 407 DLFERFGGHAQAAGFTLPADRWADLGARLADEARRHLGPDDRIPAVDVDAVVRPEELTVA 466

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
            +  LE   P+G GNP PV A         R V  A   +  E        A+AF +   
Sbjct: 467 AVRELERLAPFGEGNPEPVVALAGLPPAGARTVGGAGEHLRLEWPGG--WSAVAFGLGEL 524

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                    + +++ V     V  +RG +R  L + D  P
Sbjct: 525 ----AEQVRQARQVEVAVRPRVGTFRGEERVDLHIQDLRP 560


>gi|295094224|emb|CBK83315.1| exonuclease RecJ [Coprococcus sp. ART55/1]
          Length = 627

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 167/624 (26%), Positives = 278/624 (44%), Gaps = 58/624 (9%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRL 67
           ++  +    W     +   N   AI ++  +  +VARV+ NR V+ + A   +L+     
Sbjct: 11  IDKYVKKPEWRVAGKRADFN---AIGERFGVSPVVARVITNRGVTGEKAIAMYLDGDWDS 67

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN----- 122
            M DP ++ D  +A   I + + ++ +I I  DYDVDG  S  +++  L           
Sbjct: 68  -MHDPALMKDMVEAGEIIKEKLSDNRRIRIISDYDVDGVTSNYILLLGLRRTWAALHGSC 126

Query: 123 ------ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176
                  +  IP R+ DGYG N  L++  I +G   IIT D G  + + ++YA  +G+ V
Sbjct: 127 ADDCTVVDYDIPHRVHDGYGINKRLIDAAIADGVDTIITCDNGIAAIEQVRYAKERGLTV 186

Query: 177 IVIDHHQVKSEEIP----------AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL 226
           IV DHHQ+  EE            A A+++  R D       LC AGV F ++  +YRI 
Sbjct: 187 IVTDHHQIPFEESDGGERVYMLPQADAVIDNQRQDCEYPFKGLCGAGVAFKLIQYMYRIC 246

Query: 227 RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV 286
                     ++   ++++ LAT CD++ L+  NR YV   L   +   NPGL AL+   
Sbjct: 247 GIAES-----EVNEFMEILGLATNCDMMDLVDENRIYVKYALESLKDSRNPGLNALMRLS 301

Query: 287 NIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
             +   I+  +LG++IGP INA GR+G++      L+  D    E  A +L  +N  R+ 
Sbjct: 302 GRNEKKISTYDLGFLIGPCINAAGRLGDAKQSLEFLLERDPNVAEARARELLAVNNERKN 361

Query: 346 MESAMLEQAEAKVLTQCDDIQ-------QASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
           M  A        + T   + +          V+VV     H  +VG++A+RLKE + RP+
Sbjct: 362 MTEAGARHITDMLETATVNGEFGQAATLADKVLVVYIPAVHESVVGIIASRLKEAYTRPA 421

Query: 399 FAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
              +  E  G   GSGRSI+ +++           +    GGHAMAAG ++E+     L 
Sbjct: 422 MVFTDAETPGILKGSGRSIDSYNM--FEELNRFREMFTAFGGHAMAAGFSIEKERLDELR 479

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
               + A  ++     TP   ID  +  +  +I L + +E   PYG GN  P+FA     
Sbjct: 480 RKLNEAA--VLTDEDITPKLMIDVAMPLAYNSIELTEQIERLEPYGKGNRKPLFAQAAVP 537

Query: 518 LQSIRVVNLAH--LQMTFESQDSETLQAIAF------RVYGTPLGE------FLMQSRGK 563
           ++  +++      L++  ++     + AI F             GE         Q    
Sbjct: 538 VRRAQILGRNKNLLKLQLDTGYGRCVDAIDFDPDTFVNNIKQWFGEDECVKMLNGQPNAV 597

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587
            + V  +  +N + G +  Q+++ 
Sbjct: 598 VIDVAYYPTINEYMGRRSLQMKME 621


>gi|167749832|ref|ZP_02421959.1| hypothetical protein EUBSIR_00800 [Eubacterium siraeum DSM 15702]
 gi|167657144|gb|EDS01274.1| hypothetical protein EUBSIR_00800 [Eubacterium siraeum DSM 15702]
          Length = 672

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 167/578 (28%), Positives = 278/578 (48%), Gaps = 27/578 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W+          A+ +     +P ++  +LV+R + + + A+ + N +    + DPL+
Sbjct: 2   KKWLVRNTDN--ALAMKLKTDTGLPMLLCSLLVSRGIYTAEQAQQYFNGT---ELSDPLL 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA + I +A+ N  KI ++GDYD DG  S  ++   L     + N YIP R  +G
Sbjct: 57  IADMDKAVQAIEEAVDNEVKITVYGDYDCDGVTSTVMLFTHLDAIGADVNWYIPTR-EEG 115

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + + K   +G  LIITVD G ++ +  +     G+ ++V DHHQ+      A A+
Sbjct: 116 YGLNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAI 175

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP+R DD S    L   GV   +++ + R         +   L    DL A+ T+ DVV
Sbjct: 176 VNPHRQDDNSPYKELAGCGVALKLIMALER--------DVEGVLEQYADLAAIGTIGDVV 227

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V +GL+  +   N GL+ALI    +    IT+  + + + P INA GR   
Sbjct: 228 ALTGENRIIVKRGLLEMQYSENQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDS 287

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
               + LL++   Q  E+ A +L+ LN  R+ +ES +LE A+A+++        + V++V
Sbjct: 288 PKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQLIADPKAF-NSRVLIV 346

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ W+ GI+G+++ARL E + +P   I   E  +  GS RSIEGF +   +    E   
Sbjct: 347 CGEGWNHGIIGIVSARLLELYEKPCIVIG-IEGDEARGSARSIEGFSLYTALDACSEH-- 403

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG ++ +          + +A    P+ +     + D     S + I+ I
Sbjct: 404 LTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKFPS-MPVMTTEADIEPELSDLEISSI 462

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
           + L    PYG  N  P+F   N  + S R +    +   + E + S+  + + F      
Sbjct: 463 ENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKYTSFSAEYKGSQ-FKFLCFGTSFDK 521

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            G +     G ++ V  H+ +N +   K   +RV D  
Sbjct: 522 FGYY----PGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555


>gi|226953402|ref|ZP_03823866.1| Mg dependent 5'--> 3' specific ssDNA exonuclease [Acinetobacter sp.
           ATCC 27244]
 gi|226835858|gb|EEH68241.1| Mg dependent 5'--> 3' specific ssDNA exonuclease [Acinetobacter sp.
           ATCC 27244]
          Length = 543

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 166/538 (30%), Positives = 254/538 (47%), Gaps = 21/538 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P  +A +L  R V  +   +     ++L    P  L   D A   I QAI   ++I+I
Sbjct: 20  GVPSFIAEILARRGVQSEQELE-----LKLKHLLPPTLKGIDAAVELIDQAIDQQKQIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITV 156
            GDYD DGA S ALM+  L          +PDR   GYG  P + E         L+ITV
Sbjct: 75  IGDYDADGATSTALMVLVLQEMGARVEYLVPDRFKYGYGLTPKIAELAKQSYQPDLLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A    + VI+ DHH        A A+VNPN+L        L   GV F
Sbjct: 135 DNGISSHAGVETAQALAMQVIITDHHLTTKPTPTAEAVVNPNQLGCDFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            VL  +     Q      +  +   LDLVAL T  DV  L   NR  +  GL    + Q 
Sbjct: 195 YVLAKLASHRVQQG--KSSCKVTQYLDLVALGTYADVATLDYNNRILIDAGLKRIQQHQC 252

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++      + + A++LG+++GP INA GR+    +G   L+++D Q    +A 
Sbjct: 253 RVGILALLDIAGRDAASLRAQDLGFVLGPRINAAGRMESMRIGIECLLANDMQTAYPIAQ 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E+ M +QA + +   Q    Q    +V+  ++WH G++G++A RLKE+
Sbjct: 313 QLNQLNLERRQVETEMKQQALSALQHIQLTAEQIPPALVMFDEQWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + +EDG    GS RSI+G  I  M+         +L   GGHA AAGLT+ +
Sbjct: 373 FYRPSLVFAPDEDGIHIKGSARSIDGIHIRDMIESVAEQRPDLLSHFGGHAAAAGLTLRK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F      F +    +  + +       DG L+ SA++++ +D +E  GP+G   P P 
Sbjct: 433 EHFDEFKSVFTQMIAEM-DSDLFQATLWTDGELDDSALHLSSLDWIEQLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F     ++   R +   HL++      S ++ AIAF         F        + + 
Sbjct: 492 FEGR-FQVVDYRWLKEQHLKLKLAV-GSHSIDAIAFHAIDR----FEFNPMLGYVDLV 543


>gi|145589651|ref|YP_001156248.1| single-stranded-DNA-specific exonuclease RecJ [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048057|gb|ABP34684.1| exonuclease RecJ [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 586

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 166/576 (28%), Positives = 261/576 (45%), Gaps = 38/576 (6%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           Q+  +  ++AR+   R +        L+  +R L+  P  L +C   A  +   +   E 
Sbjct: 18  QQSGLHPLLARLYAARGLESPED---LSLELRNLI-SPKELKNCLSTASLLADILEKKEP 73

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIVDGYGPNPSLMEKFINE--G 149
           ++I  DYD DGA + A+ +R L             +P+R   GYG  P ++E    +   
Sbjct: 74  MLIVADYDCDGATACAVGLRGLRMLGGPDTPIQFLVPNRFTMGYGLTPEVVELAAQQIPK 133

Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209
            + +ITVD G  S   +  A   G++VIV DHH        A A+VNPN+         L
Sbjct: 134 PKYLITVDNGIASEAGVDRARELGMEVIVTDHHLPGDRLPKATAIVNPNQPGCSFPSKAL 193

Query: 210 CAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
              GV+F +LV +   LRQ  K        + +LLDLVAL TV DV  L   NR  V  G
Sbjct: 194 AGVGVMFYLLVALRAELRQRGKFTNETQPKVENLLDLVALGTVADVAQLDRNNRVLVSNG 253

Query: 268 LMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325
           L   R   +              +      +LG+ IGP +NA GR+ +  LG RLL++D 
Sbjct: 254 LKRIRAGISQPGIQALFQAATRDTRKANTFDLGFAIGPRLNAAGRLADMTLGIRLLLTDS 313

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIV 383
           + E   LA +LD +N+ RR++E  M E A A +        + Q S I +    WH G+V
Sbjct: 314 TDEAMALAQELDRINRERRVIEGGMQETALAHLAEDQLAGSMDQRSSICMWHPEWHQGVV 373

Query: 384 GLLAARLKEKFGRPSFAISFEE---DGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           G++A+RLKE+F RP+   +        +  GSGRS+ G  +   +      E G+++K G
Sbjct: 374 GIVASRLKERFNRPAIVFAPAAGATGEELRGSGRSLTGLHLRDALDIVSKREPGLILKFG 433

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGLT+ + +F +    FQ  A++++   +       DG L  S     + D+L  
Sbjct: 434 GHAMAAGLTIRKSDFEKFDALFQNVANDLLTDELLERKHIHDGALAPSEFTPEIGDLLAE 493

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-------QDSETLQAIAFRVYGT 551
              +G G P PVF     ++    ++   HL++            +++ + A+ F     
Sbjct: 494 -EIWGQGFPQPVFYGE-FEVTQQSLMKEKHLRLMLRPIGASELAANAKPITAVWFNRT-- 549

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                  QS   +  +   L  + ++G    QL + 
Sbjct: 550 -------QSLPAKAKLAYRLVTDRYQGQAHIQLMIE 578


>gi|255067984|ref|ZP_05319839.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sicca ATCC
           29256]
 gi|255047761|gb|EET43225.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sicca ATCC
           29256]
          Length = 566

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 170/564 (30%), Positives = 263/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R+V    +   L+  +  L+P    LT+C+ AARR+  AI   EKI+I
Sbjct: 22  GADPLIARLCASRDV---QSPAELDDKLAGLLPY-QSLTNCEAAARRLADAIERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E IP   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETIPNCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ +    +    +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRDYFSDDLREPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQAL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNDLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVIRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR     QL +      
Sbjct: 543 YRPVANEWRNQMELQLYIDYWEAA 566


>gi|298369234|ref|ZP_06980552.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298283237|gb|EFI24724.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 566

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R+V    +   L+  +  L+P    LT+C+ AARR+  AI   EKI+I
Sbjct: 22  GADPLIARLCASRDV---QSPAELDDKLAGLLPY-QSLTNCEAAARRLADAIERKEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ +         +L  LLDLVAL TV DVVPL   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRDYFSDELKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGITCLLARDDAEAQAL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q   V     D +H G+VG++A+RLK+
Sbjct: 317 AAQLNDLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N       F++    +V     +  F  DG L A  + +     L     +G G   P 
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493

Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           F      +   + +     H ++  + +D    +A+ +R               + +   
Sbjct: 494 F-TDEFHVIRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
                N WR     QL +      
Sbjct: 543 YRPVANEWRNQMELQLYIDYWEAA 566


>gi|254469078|ref|ZP_05082484.1| single-stranded-DNA-specific exonuclease RecJ [beta proteobacterium
           KB13]
 gi|207087888|gb|EDZ65171.1| single-stranded-DNA-specific exonuclease RecJ [beta proteobacterium
           KB13]
          Length = 563

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 175/568 (30%), Positives = 276/568 (48%), Gaps = 30/568 (5%)

Query: 31  LAITQKH---AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87
            +I QK        IV+++L  RN+S     D+    I  L+  P  L +CD+AA  +  
Sbjct: 10  ESIKQKLINTGRHPIVSQILAARNISSSKDVDY---PIEQLL-SPNKLLNCDEAADFLSD 65

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147
           AI   +KI I GDYD DGA+  ++ +       +  +  IP R  +GYG +  +++    
Sbjct: 66  AIQKQKKITIVGDYDADGASGSSVAILGFRLLGIEVDFLIPSRFKNGYGLSSEIVDMANT 125

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
           +   +IITVD G  S++ + +A + GIDVIV DHH        A  ++NPN+        
Sbjct: 126 KETDIIITVDNGIASFEGISHANDLGIDVIVTDHHLQAENLPDAKFIINPNQKKCSFPSK 185

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAY 263
           +LC AGVVF +L+ I + LR  N          +LL +LDLVALAT+ D+V +   NR  
Sbjct: 186 NLCGAGVVFYLLIAIRKKLRDQNYFDNLNVDEPNLLQILDLVALATIADMVKMDFNNRLL 245

Query: 264 VVKGLMVAR-RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V  GL V R +Q N GLK L    N S       +L ++I P INA GR+ + +LG   L
Sbjct: 246 VHHGLRVIRSQQCNLGLKKLFMLTNKSHLTALTSDLSFVIAPKINAAGRMDDMSLGVACL 305

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
            + +  E    A +L   N  R+  E+ M E+A+A +            I +  D+WH G
Sbjct: 306 TATNENEAHEYARQLIEFNFQRKKTETDMQEEAQAIMRGFN---NNNKTICLFNDKWHQG 362

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGG 439
           ++G+LA+RLKE F RP    + +E G   GS RSIEGF +   +    ++    +V  GG
Sbjct: 363 VIGILASRLKENFYRPVIIFAQDESGYLKGSARSIEGFHVRDAIDLVAKKNPEVIVTFGG 422

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGLT+++  F      F++ A +I+     + + ++D  +    +N+ +ID +   
Sbjct: 423 HAMAAGLTIKKDRFDSFVQSFEEVAESILKPEDLSEIIEVDDSILQDNINVHIIDEINQL 482

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
             +G G   P+F          +V+   H ++     + +T ++I F            +
Sbjct: 483 E-WGNGFQRPLF-TDTFDCVDQKVIKGLHTKLNLTKHN-QTFESIFFN---------YQE 530

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           S   R+     L  N +  + +  L + 
Sbjct: 531 SIPDRVKCLYTLETNKFNNTNKVTLNIK 558


>gi|210632534|ref|ZP_03297444.1| hypothetical protein COLSTE_01346 [Collinsella stercoris DSM 13279]
 gi|210159481|gb|EEA90452.1| hypothetical protein COLSTE_01346 [Collinsella stercoris DSM 13279]
          Length = 1127

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 156/577 (27%), Positives = 252/577 (43%), Gaps = 24/577 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           RW        +     +     +  +VAR++V   + S+D  + FL PS+     DPL++
Sbjct: 9   RWCLAKNDPSLED--ELAAGLDVAPLVARIMVAHGIKSVDEGRLFLTPSLERDWADPLLI 66

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               + A R+ +A+   E I +FGD+DVDG  S  L+   L         +IP R  +GY
Sbjct: 67  PGMAEVADRVERAVRTGEPIAVFGDFDVDGITSTCLLTEALRTLGARVRPFIPHRFDEGY 126

Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G     +++ I      L+ITVD G  + D + +   +GID++V DHH+          +
Sbjct: 127 GLTCQALDRVIEACSPSLVITVDNGIAARDEVGHLIERGIDIVVTDHHEPADLVPVGIPV 186

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            +P           L   GV   ++ ++   L   N         +  ++ AL TV D++
Sbjct: 187 TDPKMA-AHGPSRELAGVGVALKLVQVLGERLGNPNLW------RAFTEVAALGTVSDMM 239

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
            L   NRA V  G+   R    PG  AL             + L + + P +NA GR+ +
Sbjct: 240 TLTPENRALVADGIAHMRTTTRPGYVALAAVTRTDLATITADALSFSLIPRLNAAGRMAD 299

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   LL++ D+QE   LA  L+ +NQ RR +E+ + EQAEA             VIVV
Sbjct: 300 PALALNLLMARDAQEAARLAASLEEINQERRSIEAELTEQAEAIAERT---YDGGRVIVV 356

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G+ G++A+RL  ++  P+   S  EDG   GSGRS+   ++ + V       +
Sbjct: 357 GGEGWHEGVKGIVASRLVNRYHVPTLLFS-IEDGVARGSGRSVGAVNLFEAVEKC--SDL 413

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHA A G+T    N   L +         +PA       ++   +  S ++I  I
Sbjct: 414 LIRFGGHAGAVGVTCAAENLDALRERLGAVLAE-LPAEDFEDRGEVAATVRLSELDIDTI 472

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTP 552
             +    P+G GN  P+ A     +    VV      M F + D   ++ AI FRV    
Sbjct: 473 RQIGMLEPFGQGNKVPLLAACGVTMCDRAVVGKTGDHMRFVATDGASSVPAIMFRVPEVE 532

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                + +    + +        W+G  + +L + D 
Sbjct: 533 ----ELVNCDTVVDLVFEAVAECWQGRVKPKLMIKDI 565


>gi|269468951|gb|EEZ80532.1| single-stranded DNA-specific exonuclease [uncultured SUP05 cluster
           bacterium]
          Length = 565

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 159/572 (27%), Positives = 264/572 (46%), Gaps = 31/572 (5%)

Query: 31  LAITQKHA--IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
            A+ Q ++  IP  +  +   R V    A+  L+ ++  L+    +    DKA   + QA
Sbjct: 8   EALYQSYSDDIPTFLKNIYAARGV----AESQLSLTLAELLKPNFLDL--DKALLLLEQA 61

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME-KFI 146
           +    +I+I GD+D DGA +  + ++ L        +  +P+R   GYG +P ++E    
Sbjct: 62  LTKQNRILIIGDFDCDGATASVVAVKSLRMMGAQQVDFLVPNRFEHGYGLSPEIVELAIK 121

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
            +   LIITVD G +S++  + A   GI VI+ DHH        A A++NPN        
Sbjct: 122 EKQPDLIITVDNGISSFEGAELAKKSGISVIITDHHLPSDSVPKADAIINPNLKGCNFPS 181

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRA 262
            +L   GV F +   +   L ++N    N     DL  +LDLVAL TV DVV L   NR 
Sbjct: 182 KNLAGVGVCFYLFTSLKSHLHKNNYFTNNNIPLPDLRHVLDLVALGTVADVVKLDQNNRI 241

Query: 263 YVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
            + +G+   R +         L      +  + A +LG+ + P +NA GR+ + + G + 
Sbjct: 242 LISEGIRRIRAKQCAPGILALLEISKRQAETLQASDLGFSVAPRLNAAGRLSDISRGIKC 301

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L++DD  +    A +L+  NQ R+  ++ + ++A+A V  Q    +    + +    WH 
Sbjct: 302 LLTDDINDARRYAKELEEFNQKRKQEQTRIQDEAQAIVDAQDV-TEGKFALSLFDPSWHE 360

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           GIVG++A +LKE +  P    +   D    GS RSI    I  ++        G+++K G
Sbjct: 361 GIVGIVAGKLKEDYHCPVAVFAKSGD-FLKGSIRSIPSVHIKDLLDLVDRQNPGLILKFG 419

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGL+++  +F      F       +   +       DG L A  +++   ++++ 
Sbjct: 420 GHAMAAGLSIKAEDFYSFKRVFHDAIKAHLNGEMPKMELLTDGKLEAFDISLNNAEIIKE 479

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFL 557
           AGP+G G   P+F     ++   +VV   HL+   +   +++   AIAF         F 
Sbjct: 480 AGPWGQGFEEPIFYGE-FEIVEQKVVGEKHLKCRLKLVGNNQVHDAIAF---------FQ 529

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                K+  V   L +N WRG+   QL V   
Sbjct: 530 DPLDTKKATVVYKLSLNIWRGNISLQLMVEQI 561


>gi|317154012|ref|YP_004122060.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944263|gb|ADU63314.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 567

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 170/579 (29%), Positives = 288/579 (49%), Gaps = 25/579 (4%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W +       + A+ + ++ ++  ++  +L NR ++  +    FL+P +R L   P  + 
Sbjct: 5   WKARGENAPPSSAV-MAEQLSVSPLIVDILWNRGLTSVEDMDRFLSPGLRHLAK-PSEIP 62

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +AA  + + +     + I+GDYDVDG  + AL+  FL+   ++A  ++P+R+ +GYG
Sbjct: 63  GLMEAAEVLARGLAEGRTLAIWGDYDVDGITATALIKEFLALRGISAMHHLPNRMEEGYG 122

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   +E+    GAQ+++TVDCG +    +  A   G+ V V DHH        A+A+ N
Sbjct: 123 MNIPGVEQLAQAGAQMLLTVDCGISDIGPVARARELGMLVAVTDHHLPGDALPDAHAVCN 182

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P    +      L   GV F+++  + R+L  +       D+  LLDLVAL TV DVV L
Sbjct: 183 PRLR-EGGPCDDLAGVGVAFMLVCALNRMLPGE-----QADVRPLLDLVALGTVADVVRL 236

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGES 314
            G NR  V  GL+V +    PG+ AL    +    + + A  +G+ + P +NA GR+G+ 
Sbjct: 237 TGQNRILVKNGLLVIKEAARPGMAALKVVSDYERKAELGAGQIGFNLAPRVNAAGRMGDP 296

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++    E   +A +L+ +N  RR  E  + ++A A+  T     ++ + +V+ 
Sbjct: 297 GKALSLLLAKSFDEAMPIAEELNAINMERRRQEQEIADEAFAQAETM----KRMAGLVLH 352

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            D WHPGI+G++A+R+ E++ RP+  + S ++ G   GSGRSI  FD+ + +       +
Sbjct: 353 ADHWHPGIIGIVASRVVERYYRPTLMLCSRQDTGLIKGSGRSISEFDLHESLKAV--SPL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  AAGL++   N   L + F  F  + +     TP  K+D  L  + +   L+
Sbjct: 411 LAGFGGHKQAAGLSLVPENLAALREQFNAFVISQLGPEPLTPTLKLDRQLPFAEITNTLL 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYG 550
           + LE   P+G GNP PVFA     +   R+      H+++     Q    L   A+R+  
Sbjct: 471 NELELLQPFGLGNPEPVFASAPVTVAEYRLFGRENEHVKLVLADAQTGARLPGKAWRMGR 530

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               EF   ++G+ M       ++ +RG     LR+ D 
Sbjct: 531 ----EFPRNTQGQAMRFAFTPKIDRFRGIPSIDLRIRDW 565


>gi|268678688|ref|YP_003303119.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616719|gb|ACZ11084.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 527

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 162/555 (29%), Positives = 272/555 (49%), Gaps = 42/555 (7%)

Query: 44  ARVLVNRNVSIDYAKDFLNPSIRLL-------MPDPLILTDCDKAARRIVQAIYNSEKIM 96
           AR+L     S +  +  L              +P P  L D  KA++RIV A+   E+I 
Sbjct: 2   ARLL-----SKEEIRRILQSRFENDDCTRLNEIPKPSSLKDIAKASKRIVHAMQKGERIA 56

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I GDYDVDG  S  ++ +F     VN ++ IP+R  DGYG NP   E      AQ+IITV
Sbjct: 57  IVGDYDVDGVISSVILSQFFDDLHVNYSLVIPNRFTDGYGLNP---EIVAKLDAQVIITV 113

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G ++ +A Q    QGID+I+ DHH V      AYA+VNP + D       +C A V +
Sbjct: 114 DNGISALEAAQICKEQGIDLIITDHHNVPEVLPEAYAIVNPKQEDCCFPHCEICGAQVAW 173

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
            ++  +   L  +      +DL S LDL+ +A + D++ L+G+NR  V KG++   R   
Sbjct: 174 YLVAALKEELGIE------YDLSSFLDLLCIAIMADMMELVGMNRVMVKKGIIELNRSKR 227

Query: 277 PGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           P  +A+ +     +   ++++ ++I P IN+ GR+ ++      + S +  E   L   +
Sbjct: 228 PAFEAIRQYYG-KATFESDDISFLIAPLINSSGRMEDARFSYEFIKSKNVDEALKLLDYI 286

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
             LN+ R+  E  + E     V       +  ++IVV G+ WH GIVG++A+RL ++F +
Sbjct: 287 VSLNEARKEEERLLFEATLPFVR------EDENIIVVWGEEWHEGIVGIVASRLSKRFKK 340

Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456
           P+   S  +D K  GS R + G +I +++    +E  L+  GGH  AAG+++E  +    
Sbjct: 341 PAIVFSIRDD-KAKGSARGVGGVNILELIRA--QEKFLIGYGGHKGAAGVSIEVHHLPYF 397

Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
            +     A +++          + G ++A  ++  L+++LE+  PYG  NP P F   N 
Sbjct: 398 KEKL-VEAASVLTQEELEADNDLLGEISADQIDFELLEILENQEPYGQKNPKPSFLLRNI 456

Query: 517 KLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
            ++  R++     HL++  + + S  L+A+ F              +G ++ +   L  N
Sbjct: 457 GVKVDRLIGKEGQHLKLILQ-EGSNALEALFFNYDTK-------VKQGDKVDILFTLSRN 508

Query: 575 YWRGSKRCQLRVLDA 589
            +RG    QL +   
Sbjct: 509 DYRGLVTPQLMIKQI 523


>gi|295101009|emb|CBK98554.1| exonuclease RecJ [Faecalibacterium prausnitzii L2-6]
          Length = 709

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 184/576 (31%), Positives = 295/576 (51%), Gaps = 29/576 (5%)

Query: 23  GQEGINRALAITQ-KHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDK 80
            +E     LA  Q +  +   +A +L  R ++    A   L       + DP++LTD DK
Sbjct: 41  SEEKYRSVLAAQQKEAGL---LAGILAARGITDPAEALTLLAG--EEELSDPMLLTDMDK 95

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           A  RI++AI   E I++FGDYDVDG  + AL+ + L          +P R  DGYG + +
Sbjct: 96  ACERILRAIDEGEMIVVFGDYDVDGVTATALLYQHLKGMGAAVKCMLPSREGDGYGLSKN 155

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
            ++   ++G +LI+TVD G ++ +   +A + GID+I+ DHH        A A+V+P R 
Sbjct: 156 AIQSIYDKGCRLIVTVDNGISAVEEAAFAASLGIDLIITDHHLPHDTLPQAAAIVDPRRA 215

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           DD S    LC AGV F +   +       +  P    L    DL A+ TV DV+PL G N
Sbjct: 216 DDHSPFKGLCGAGVAFKLCAAL-------DGCPPEEMLEYCGDLAAVGTVADVMPLTGEN 268

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           R  V  GL   +    PG  AL+E V     P+TAEN+ Y I P INA GR+  +    +
Sbjct: 269 RTIVKAGLRQLQNTDRPGFCALLEEVGLAGKPVTAENISYAIAPRINAAGRMDSAVTALQ 328

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           L++ +D      LA KL  +N  R+  E  +++ A+  +  + + ++   VI++ G  WH
Sbjct: 329 LVLCEDEDRAVELAHKLSDINIQRQETEMEIVKAAQELLDAEPERLEDR-VILLWGRDWH 387

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
           PG++G++A+RL EK GRP   +S +E G+G GSGRS++GF++ + ++      IL++ GG
Sbjct: 388 PGVIGIVASRLVEKTGRPVIVVSVDEHGEGKGSGRSVQGFNLHECIASC--ADILLRFGG 445

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGL+V   +   L      +A    P ++ TP  + D  ++   + +  +  L+  
Sbjct: 446 HAMAAGLSVREEDLQTLRQRLNDWAARECP-VLRTPPLECDLSVHLDRLTVESVRRLDQL 504

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
            PYGA NP+PVF      ++ +  V+   H ++     +S ++ A+ F +      E + 
Sbjct: 505 APYGADNPSPVFVLEMAVVEGVYAVSEGKHCRLRLRQGNS-SIYAVWFGM----HPEQVP 559

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQL--RVLDASPV 592
            S G  +     L V  +   +  QL  R+++  P 
Sbjct: 560 YSTGDVVDAAISLSV--YDSPRGAQLSGRIIELHPA 593


>gi|269837412|ref|YP_003319640.1| single-stranded-DNA-specific exonuclease RecJ [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786675|gb|ACZ38818.1| single-stranded-DNA-specific exonuclease RecJ [Sphaerobacter
           thermophilus DSM 20745]
          Length = 598

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 178/587 (30%), Positives = 274/587 (46%), Gaps = 33/587 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           ++W+        + A  + +      ++  +L  R          FL P +  L PDP  
Sbjct: 39  YQWIEPAP---ADWAHTLCEDF----LLGEILWRRGFRDRAAVDAFLRPRLDDL-PDPHA 90

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D   A   I   I     I+++GDYD DG    AL+ R L+         +P+R+ DG
Sbjct: 91  LPDLTAAVSLIRDTIAAGRPIVVYGDYDADGLCGTALLTRALTALGAEVRTMVPNRLTDG 150

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N +   +   +GA L I VDCG+   +AL+     GI  +V+DHH V+   +PA A 
Sbjct: 151 YGLNLNAARRIAADGAGLAILVDCGTGDAEALRLLQAAGIPAVVLDHHHVRDPNLPAAAF 210

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P R D       L AAGV + +   +    R    +PL             ATV DVV
Sbjct: 211 VSPRRPDSQYPFAGLAAAGVTYQLARALLGEERAAGLLPLAAL----------ATVADVV 260

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
           PL   NRA V  GL         GL+ L     +    +TA +L +++ P +N+ GR+ +
Sbjct: 261 PLERDNRAIVHHGLRRFAADAPLGLQVLCVDAGVDARSLTAWHLAFILAPRVNSAGRMED 320

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L  RLL+++D  E   LA  L  LN  R+     ML QAE ++    DD   ASV++V
Sbjct: 321 PTLALRLLLTEDPAEARRLARYLSRLNAQRQQATERMLAQAERRLALGTDD--NASVLLV 378

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + W  G+VGL+A+RL +++ RP+  ++ + +    GS RSI+GFDI + +       +
Sbjct: 379 AEEGWSVGLVGLVASRLADRYQRPAVVLARDGE-LSRGSARSIDGFDIVEALDAC--RDL 435

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           LV  GGH+ AAGLTVE  +   L +          P  +  P  ++D  L+A+ +     
Sbjct: 436 LVAHGGHSRAAGLTVETAHLRTLEERLSSLIGRTFPDGLPLPALQLDAELHANELVPETA 495

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQ---AIAFRVY 549
            ++E+  P G GNP PVF   +  +Q  R+  +  HL     ++D   ++   A++F   
Sbjct: 496 RLIEALEPCGTGNPTPVFFIRDVSVQRPRLSRDGKHLLFDVVARDHRIVRRVGAVSFNGS 555

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
                     +  +R  V   L  ++W GS+R  L V+D  P    H
Sbjct: 556 ER----LDELAALRRADVAFTLRRDHWNGSERLSLEVVDFRPATARH 598


>gi|297568779|ref|YP_003690123.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924694|gb|ADH85504.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 592

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 174/601 (28%), Positives = 273/601 (45%), Gaps = 32/601 (5%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69
            S  G R     GQ  ++   ++     +P+ +  VL+ R        + FL P++  L 
Sbjct: 4   QSAGGER-KGERGQVDLSCCKSLALDLGLPEALVAVLLRRGHRDRAGIESFLRPNLADL- 61

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIP 128
           PDP ++    +A   I  ++ + + I+++ DYDVDG ++ A++ +FL + +  +    +P
Sbjct: 62  PDPDLMLGMSRAVELIANSMGSRQPIVVYADYDVDGLSAGAVLYKFLENLNCRDLYYLLP 121

Query: 129 DRIVDGYGPNPSLMEKFIN----EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            R  DGYG +  L+ +           L+ITVDCG   + AL  A   G  VIV DHH+ 
Sbjct: 122 HRGEDGYGVHAHLLAELRAKLGGNARPLLITVDCGIGDHQALIEARELGYTVIVTDHHRP 181

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF--DLLSLL 242
           +    PA A++NP++        +L   GV F +++ + R L            +L   +
Sbjct: 182 EDTLPPAAAILNPHQAGCPFPCKNLAGVGVAFYLMMGLRRHLAGQGFFADQPPVNLKEYM 241

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---------IT 293
           DLVAL TV D+V L G NR  V  GL V +    PGL AL     I  P         I 
Sbjct: 242 DLVALGTVADMVALRGANRILVRAGLEVMQESRRPGLVALAVAAGIKPPKGEGSEKRAIY 301

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            E++ + + P +NA GR+       RLLI+D+  E + LA +L+ LN+ RR +   +  Q
Sbjct: 302 PEDISFSLAPRLNAAGRVATPETAFRLLITDNPAEAQALAAELEELNRWRRQLSDQVYRQ 361

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           A+ +      + Q+  V+V+  + WH G++G+ A RL++ F RP     +E      GSG
Sbjct: 362 AKERAAA--SEQQKMQVLVLADENWHTGVLGIAATRLQQDFNRPVILFGYESPNILRGSG 419

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RS EG D+  MV    E  +L+  GGHA A G+T++            + A  I+     
Sbjct: 420 RSFEGLDLLAMVDACSE--LLLGYGGHAAALGVTLDPGRLAEFQAQLNEAAGRIMAERQP 477

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531
            P   +D       ++  L        P+G GNP P+F      L    VV     HL+ 
Sbjct: 478 EPTITVDWHFADGRIDAGLTTNYHLLEPFGPGNPEPLFQVKG-PLAQAGVVGREQNHLRF 536

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            ++ +D   L  IAF       G  L  S    + +   L  N ++G    QL+     P
Sbjct: 537 RWQQKD-FNLPGIAFN-----YGNSLKPSNPGPVELIFALRRNIYQGRVAWQLQAKSIKP 590

Query: 592 V 592
            
Sbjct: 591 T 591


>gi|227872828|ref|ZP_03991140.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sinus
           F0268]
 gi|227841323|gb|EEJ51641.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sinus
           F0268]
          Length = 571

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 159/584 (27%), Positives = 280/584 (47%), Gaps = 35/584 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74
            +W     +        + +K ++  ++ R+L NR+++ +   ++FL       +P PL 
Sbjct: 2   KKWFVYGKKADFQ---ELGEKLSLDPVLVRILRNRDLTTEEEMRNFLEG---EEIPSPLF 55

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132
           L D  +   R+ +A+   EK+ I GDYDVDG  +  ++ + LS        ++ IP RI+
Sbjct: 56  LPDSIRFLNRLERAMKEGEKVRIVGDYDVDGVCASTILAKALSLFFSKEQLSVVIPHRIL 115

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ------VKS 186
           DGYG N  ++E+   EG  L+IT D G +++ A++ A + G+DV++ DHH        K 
Sbjct: 116 DGYGINEQIIEEAKAEGISLLITCDNGISAFSAMEKAKSYGMDVLLTDHHDLRRDEDGKK 175

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A+A+VNP R         +C A V +L++ ++    ++         L  L     
Sbjct: 176 RIPEAFAVVNPKREGSKYPNEEICGAMVCYLLMKMLLEKRQK-----GLELLEELACFAG 230

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304
           +ATVCDV+PL   NR  V   L   ++  N G++AL+++ +      I++  LG+ IGP 
Sbjct: 231 IATVCDVMPLQKENRVIVKYCLTHLQKTQNIGMQALLKQCHILPEQEISSYTLGFQIGPC 290

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INAGGR+  + L   L + +D  + E  A  L VLN+ R+ M    +++A+A    +   
Sbjct: 291 INAGGRLESAMLALSLFLEEDEGKAEEKAAHLLVLNEERKEMTKKGVDEAKALAEQEG-- 348

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                ++ +     H  + G++A R++E + RP F ++  EDG    SGRSI G+ +   
Sbjct: 349 --DVPLLFLVLPDLHESLAGIVAGRIREAYYRPCFILTNGEDGSCKASGRSIPGYPM--A 404

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                ++ +L++ GGH MAAG +V + N   L     + A   + A        ID VL 
Sbjct: 405 ERLEEQKELLLRFGGHPMAAGFSVTKENVPGLKKALLQNAR--LQAEDLEEKVWIDVVLP 462

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542
            S +    +  L    P+G GN  P FA  N  L+  ++V      +++  E +    ++
Sbjct: 463 FSYLKEDFVRSLSRLEPFGRGNEKPAFAQKNVLLKDFKIVGKNKNAIKLYLEDEQGTRVE 522

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
            + F      L +   +S   + ++  +  +  +   K+ Q+ V
Sbjct: 523 GVLFEDGEKFLNK---KSSRNKFNLLYYPKIQVYNNIKQLQVVV 563


>gi|166711941|ref|ZP_02243148.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 579

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 174/566 (30%), Positives = 275/566 (48%), Gaps = 24/566 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L + + AA  +  AI   ++I++ GD
Sbjct: 24  PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSEVAAALLADAIAQQQRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + ++LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R  +G 
Sbjct: 200 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+ +D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++   GGHAMAAGL++ 
Sbjct: 380 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQTFGGHAMAAGLSIH 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           R         FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F   + ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDG-HFEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPVEG 594
             L  + +RG    QL V    P  G
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPAAG 577


>gi|50086458|ref|YP_047968.1| ssDNA exonuclease, 5'--> 3' specific, Mg dependent [Acinetobacter
           sp. ADP1]
 gi|49532434|emb|CAG70146.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter
           sp. ADP1]
          Length = 568

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 175/559 (31%), Positives = 268/559 (47%), Gaps = 20/559 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P+ +A +L  R V      D     ++L       L   D A   I QAI   ++I+I
Sbjct: 20  DVPEFIAHILARRGVDSIQQLD-----LKLKYLLKPTLKGLDTAIALIDQAIDQQQQIII 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156
            GDYD DGA S ALM   L       +  +PDR   GYG  P++ +        +L+ITV
Sbjct: 75  VGDYDADGATSTALMCLALKEMGARVDYIVPDRFKYGYGLTPAIADLAHQQCQPELLITV 134

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S+  ++ A   G+ VI+ DHH        A A+VNPN+L+       L   GV F
Sbjct: 135 DNGISSHAGVEQAQQLGMKVIITDHHLTTKSAPDAEAVVNPNQLNCPFPSKALAGVGVAF 194

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275
            +L  +   LRQ +  P    +   LDLVAL T  DV  L   NR  V  GL    ++Q 
Sbjct: 195 YLLAHLSS-LRQAHHKPSCK-ITQYLDLVALGTYADVASLDYNNRILVDAGLKRIQQQQC 252

Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G+ AL++        + A++LG+++GP INA GR+   N+G   L++ D +    +A 
Sbjct: 253 RAGILALLDIAKRDPSTLKAQDLGFVLGPRINAAGRMDSMNIGIECLLASDLETAYPIAE 312

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           +L+ LN  RR +E+ M +QA   +   Q         +V+  + WH G++G++A RLKE+
Sbjct: 313 QLNRLNLERRQVETEMKQQALGYLEDIQLQHENIPPALVMFAENWHQGVIGIVAGRLKEQ 372

Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           F RPS   + + DG+   GS RSIEG  I   +         ++   GGHA AAGLT+++
Sbjct: 373 FHRPSIVFAPDTDGEHIKGSARSIEGIHIRDTIEQVAEQHPHLVSHFGGHAAAAGLTLKK 432

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F    + F       +   +   V   DG L A A+++  +D +E  GP+G   P P 
Sbjct: 433 SHFEEFKNVFTACIA-QMDETLLQAVLWTDGSLPAQAIDLETVDWIERLGPWGQKFPLPQ 491

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     ++   R +   HL++     +  ++ AIAF        +F      K +++   
Sbjct: 492 FEGR-FEVLDYRWLKDIHLKLKLGLGEYGSVDAIAFNAAQ----KFDFDPMKKHVNLVYE 546

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L  N + GS   QLR+L  
Sbjct: 547 LDRNEFNGSVNLQLRILHL 565


>gi|312143975|ref|YP_003995421.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp.
           'sapolanicus']
 gi|311904626|gb|ADQ15067.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp.
           'sapolanicus']
          Length = 805

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 170/585 (29%), Positives = 281/585 (48%), Gaps = 35/585 (5%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
              W     ++ I              ++  +L  R        + +L+  ++ L  DP 
Sbjct: 2   NKFWQIKSYRDNIEGEK----------LIDDLLEERGFDNLKDKRKYLSSDLKYL-SDPF 50

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIV 132
           +L   +KA + I +++ +  KI+I+GDYDVDG  S AL+ ++      +  + +IPDRI 
Sbjct: 51  LLPGMNKAVKLINESLNSKGKILIYGDYDVDGITSTALLYQYFKKRFKIEVDYFIPDRIE 110

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +   + +    G  LIITVDCG T++  ++     G+ VI+ DHH    +   A 
Sbjct: 111 NGYGLSKKAVHEIKARGIDLIITVDCGITAFKEVELIKELGMKVIITDHHTPAEKLPDAA 170

Query: 193 ALVNPNRLDD-LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            ++N + L +       +   G  F ++      L +D    L       L +VAL TV 
Sbjct: 171 TVINHHLLKEKNHVLSEIAGVGTAFKLVQA----LEKDKSFDLENLAQDFLPIVALGTVA 226

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           DV PL G NR  V  GL +  +  N GLK LI ++N+    IT+  +GY+I P INA GR
Sbjct: 227 DVAPLKGENRIIVKHGLGLINKGKNLGLKILINKLNLDSQKITSGQMGYIIAPPINAAGR 286

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I  +N    LLI+D +++ E +A  L  +N  R+  E  + +QA  K+     +I++   
Sbjct: 287 IYNANKALELLITDKAKKAEKIADTLIKINSERQREEELIYKQALEKI--DNLNIEEEKS 344

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAV 429
           I++   RWH GI+G++A++L EK+  P   ++ +E+ +    S RSI   +I + +    
Sbjct: 345 IILADSRWHSGIIGIVASKLVEKYNLPVILMALDENDEFAKASARSIAKLNIYQALKS-- 402

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
            E  L+  GGH  AAG +++        D F K+    +       + KID  L+   +N
Sbjct: 403 TENYLLNFGGHKAAAGFSIKIDKIADFKDAFVKYLKQNLTDEDYFKIKKIDVNLDIDKLN 462

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547
             L++ LE+  P+G  NP P F F N K +S   +     HL++         L A+ F 
Sbjct: 463 KTLVNKLEAFSPFGVANPRPKFLFKNIKSESYYKMGKKNNHLKINL----GSNLSAVGFN 518

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +     G+F  +   K++ V     +NYW+G +  QL++ D    
Sbjct: 519 M-----GDFFSELEAKKIDVIAQPEINYWKGRENIQLKISDLRKA 558


>gi|291531043|emb|CBK96628.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium siraeum
           70/3]
          Length = 672

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 168/578 (29%), Positives = 276/578 (47%), Gaps = 27/578 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W+          A+ +     +P ++  +LV R + + + A+ + N +    + DPL+
Sbjct: 2   KKWLVRNTDN--ALAMKLKTDTGLPMLLCSLLVGRGIYTAEQAQQYFNGT---ELSDPLL 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D DKA + I  A+ N  KI ++GDYD DG  S  ++   L     + N YIP R  +G
Sbjct: 57  IADMDKAVQAIEAAVDNEIKITVYGDYDCDGVTSTVMLFTHLDAIGADVNWYIPTR-EEG 115

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + + K   +G  LIITVD G ++ +  +     G+ ++V DHHQ+      A A+
Sbjct: 116 YGLNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAI 175

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP+R DD S    L   GV   +++ + R         +   L    DL A+ T+ DVV
Sbjct: 176 VNPHRQDDNSPYKELAGCGVALKLIMALER--------DVEGVLEQYADLAAIGTIGDVV 227

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313
            L G NR  V +GL+  +   N GL+ALI    +    IT+  + + + P INA GR   
Sbjct: 228 ALTGENRIIVKRGLLEMQYSENQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDS 287

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
               + LL++   Q  E+ A +L+ LN  R+ +ES +LE A+A+++        + V++V
Sbjct: 288 PKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQLIADPKAF-NSRVLIV 346

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ W+ GI+G+++ARL E + +P   I   E  +  GS RSIEGF +   +    E   
Sbjct: 347 CGEGWNHGIIGIVSARLLELYEKPCIVIG-IEGDEARGSARSIEGFSLYTALDACSEH-- 403

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAG ++ +          + +A    P+ +     + D     S + I+ I
Sbjct: 404 LTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKFPS-MPVMTTEADIEPELSDLEISSI 462

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552
           + L    PYG  N  P+F   N  + S R +    +   T E + S+  + + F      
Sbjct: 463 ENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKYTSFTAEYKGSQ-FKFLCFGTSFDK 521

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            G +     G ++ V  H+ +N +   K   +RV D  
Sbjct: 522 FGYY----PGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555


>gi|78357757|ref|YP_389206.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220162|gb|ABB39511.1| exonuclease RecJ [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 568

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 169/580 (29%), Positives = 277/580 (47%), Gaps = 21/580 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
             W+    +          ++  + +++ ++L  R + + +    +L+P +R L P P  
Sbjct: 3   KNWIPRGTEPLPGETALWAERLGVSELLVQLLWTRGLHTPEDMDVYLSPGLRHLAP-PDC 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                +AA  +   +       ++GDYDVDG  SVAL+  FL+   + A  +IP+R  +G
Sbjct: 62  WPGLAQAAAVLDDGLAQGLPFAVWGDYDVDGVTSVALVKSFLAAHGIAARHHIPNRFEEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + +E+   EG +L++TVDCG + ++++  A   G+ V+V DHH        A+A+
Sbjct: 122 YGMNVAWVERLAQEGVRLLLTVDCGISDHESVARARELGMTVVVSDHHLPGESLPQAHAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            NP   D       L   GV F ++  +   L Q   V    D+  LLDLVAL T+ DVV
Sbjct: 182 CNPRLADC--PCPALAGVGVAFFLMAALNSRLAQRTGVKA--DIRPLLDLVALGTIADVV 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIG 312
            L G NR  V  GL+V    G PG+ AL E    S    + A  + + + P INA GR+G
Sbjct: 238 DLSGQNRILVKNGLLVMTEAGRPGIAALKEVSGYSVSASLGAGQVAFGLAPRINAAGRLG 297

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           E++    LL++ D      LA +LD +NQ R+  E  +LE+A  +   Q    Q    +V
Sbjct: 298 EADTALSLLLAPDYAAAAPLAARLDAMNQERKEEEERILEEAREQAAAQ----QDRMGLV 353

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +    WH G++G++A+R+ E+F RP+  +  +E G   GSGRS   F + + ++      
Sbjct: 354 LYAPHWHAGVIGIVASRIVEEFYRPTLIL-CDEGGVVKGSGRSTAEFHLHEGLTRC--AD 410

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NIA 491
           +L+  GGH  AAG++++      L + F             T   K+D  L  +   + A
Sbjct: 411 LLLGFGGHRQAAGMSLDHAGVDALRERFHAVVVESCGPHPLTASLKVDAELGFARASDFA 470

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYG 550
           ++  LE   P+G GN  P F+ P  +++  R     H+Q+         TL+A A+R   
Sbjct: 471 MLKELELLQPFGMGNAEPTFSSPVLEVRGNRRFGKNHMQLELLDPSCGVTLRAKAWRQAD 530

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                     RG++M +     ++ + G     LR+ D  
Sbjct: 531 N----LPRDMRGRKMRLAYTPRIDRYNGLASVDLRIKDWE 566


>gi|295676931|ref|YP_003605455.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           CCGE1002]
 gi|295436774|gb|ADG15944.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           CCGE1002]
          Length = 568

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 185/584 (31%), Positives = 270/584 (46%), Gaps = 35/584 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
           V+          L    +  +  ++AR+  +R V   +  +      +  L+P P  L  
Sbjct: 5   VTRPCSPVDAEVLT---RCGMHPVLARLYASRGVCLPEEVET----GLARLVP-PADLKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           CD AA  +  A+    ++++  DYD DGA + A+ +R L       +  +P+R+  GYG 
Sbjct: 57  CDAAAALLADALQQQRRMLVVADYDCDGATACAVAVRGLRMFGARIDYLVPNRMEHGYGL 116

Query: 138 NPSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
            P ++E   +       L+ITVD G  S D +  A   GIDV+V DHH    E   A A+
Sbjct: 117 TPDIVELAARSAAGKPDLLITVDNGIASVDGVAAANTLGIDVLVTDHHLPGDELPAARAI 176

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVC 251
           VNPN+         L   GV+F VL+ +   LR+            L  LLDLVAL TV 
Sbjct: 177 VNPNQPGCTFPSKCLAGVGVMFYVLLALRAELRRRGAFGDALPEPRLDGLLDLVALGTVA 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGG 309
           DVV L G NR  V +GL   R+       A + R        A   +LG+ +GP +NA G
Sbjct: 237 DVVKLDGNNRVLVAQGLQRIRKGRMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAG 296

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ + +LG   L +DD      LA +LD +N+ RR +E+ M +QA   + T   D   A+
Sbjct: 297 RLSDMSLGIECLTTDDVGRAWELAQQLDTMNRERREIEAGMQQQALDDLST--VDPDGAT 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF 427
            I +    WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +  
Sbjct: 355 TITLFNPGWHQGVIGIVAGRLKEKFHRPSFTFAPADDTGVLVKGSGRSIPGFHLRDALDL 414

Query: 428 A--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
               E  ++VK GGHAMAAGLT+   +  R    F+      + A       + DG L  
Sbjct: 415 ISKREPDLIVKFGGHAMAAGLTLAAADVPRFTAAFEAVGREWLSAEALARTVETDGELED 474

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
           +      ++ML+ A  +G G P PVF+    ++ S  +V   HL++    +  +   AI 
Sbjct: 475 AYFTPQFVEMLD-AAVWGQGFPAPVFSGE-FEVASQALVKDKHLKLQL-LRGRQRFNAIW 531

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           F    T            R  V   L  + W G  R QL V  A
Sbjct: 532 FNHTDT---------LPARTTVAYRLASDTWNGVSRVQLIVEHA 566


>gi|262039442|ref|ZP_06012746.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           goodfellowii F0264]
 gi|261746509|gb|EEY34044.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           goodfellowii F0264]
          Length = 894

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 160/592 (27%), Positives = 277/592 (46%), Gaps = 34/592 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +WV     +  +  +       +   + ++L +R + S    K+FLNP +  +   P  L
Sbjct: 5   KWVIKSVPKDKDIKIN---DIPVDKDILKILSSRGIKSAKDIKNFLNPKLENIQ-SPYGL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134
            D +K A  I +A+   + I I+GDYDVDG  S +++   L      N N YIP R  +G
Sbjct: 61  YDMEKTAEEIEKAVNKQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPVR-DEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYA 193
           YG N   ++K  + G +L+ITVDCG T++  ++YA   G+ VI+ DHH    ++   A A
Sbjct: 120 YGLNNDALKKIKDSGGELVITVDCGITAFTEVEYANFLGLSVIITDHHNLHGNKIPKALA 179

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NP R ++      L   G +F V++ ++       K          LDLVA+ TV D+
Sbjct: 180 VINPKRSENSFSFNALAGVGTIFTVILALFERKGIKEKA------YKYLDLVAIGTVADI 233

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKAL---------IERVNISSPITAENLGYMIGPS 304
           VPL+  NR +   GL       N GL  L             N     +  ++G++I P 
Sbjct: 234 VPLLEENRIFTKFGLEKLPFSENKGLSFLLYKLFNNEANSANNPKVEYSTYDVGFIIAPV 293

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
            NA GR+ ++ +  +LLISD+ +E+E++  +L   N  R+ +++ ++E  E  +  Q   
Sbjct: 294 FNAAGRLKDAKMVVKLLISDNDREIEIIVKELINKNYERKELQNNIVEMVEKNIEKQ--H 351

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGK 423
           I +  VI+     +H G++G+ AA++ + + +P   +  +ED G  +GS RSIE F+I  
Sbjct: 352 INEDFVIIDYSPEYHHGVIGIAAAKIVDTYYKPVIIMEVKEDEGIAVGSCRSIENFNI-- 409

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           + +      + VK GGH+ AAG T+   N          +A  I+       V  ID  +
Sbjct: 410 LEALQSMPELFVKFGGHSGAAGFTIPIKNIELFRKKINDYAKKILKEEDFVKVINIDKQI 469

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541
               ++     ++E   P+G GNP+P F   N  L++I+ +     HL    + +   + 
Sbjct: 470 PIQKISYEFFQVIELLKPFGFGNPSPTFQTKNILLENIKFIGESKNHLMFDLKQKGFSSR 529

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            A+ F         F   S+     +   + V  ++     ++ + D    +
Sbjct: 530 NAVWFGAGEY----FKELSQNLVYDIVYKMKVESFQDRYYTKVYIDDIKVSD 577


>gi|312796705|ref|YP_004029627.1| Single-stranded-DNA-specific exonuclease recJ [Burkholderia
           rhizoxinica HKI 454]
 gi|312168480|emb|CBW75483.1| Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-)
           [Burkholderia rhizoxinica HKI 454]
          Length = 577

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 176/576 (30%), Positives = 275/576 (47%), Gaps = 32/576 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
              A A+ Q H I  ++AR+  +R + +    +     ++  L+P P+ L+    AA  +
Sbjct: 21  PADAHALAQ-HGIHPVLARLYASRGIGTPAEVET----ALARLLP-PVQLSGASAAAALL 74

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-- 143
             AI    +I++  DYD DGA + A+ +R L     + +  +P+R   GYG  P ++E  
Sbjct: 75  ADAIAARRQILVVADYDCDGATACAVAVRGLRLFGAHVDYLVPNRFEYGYGLTPEIVELA 134

Query: 144 -KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
            +       L+ITVD G  S D +  A   GIDV++ DHH        A A+VNPN+   
Sbjct: 135 ARRPGARPDLLITVDNGIASVDGVAAANALGIDVLITDHHLPGDTLPAARAIVNPNQPGC 194

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLN 260
                HL   GV+F VL+ +  +LR+           L  LLDLVAL TV DVV L   N
Sbjct: 195 AFPSKHLAGVGVMFYVLLALRALLRERGAFDGRPEPRLDGLLDLVALGTVADVVRLDANN 254

Query: 261 RAYVVKGLMVARRQGNPGL--KALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGS 318
           R  V +GL   R                  +   +A +LG+ +GP +NA GR+ + +LG 
Sbjct: 255 RVLVAQGLQRIRTGKMQPGVAALFRAAARDARNASAFDLGFALGPRLNAAGRLSDMSLGI 314

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
             L++DD+Q  + LA +LD +N+ RR +E+ M EQA A++     D + A+ I +    W
Sbjct: 315 ECLVTDDAQRADALAQQLDAMNRERREIEAGMQEQALAELAQL--DPRDAATITLFNPAW 372

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGIL 434
           H G++G++A RLKE+F RP+   +  ++      GSGRSI GF +   +      E G++
Sbjct: 373 HQGVIGIVAGRLKERFHRPAITFAPADESGERVKGSGRSIPGFHLRDALDLISKREPGLI 432

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGHAMAAGLT+   +  R    F+  A   +         + DG L  +    + ++
Sbjct: 433 ERFGGHAMAAGLTLRTSDVPRFTAAFEALAREWLNEDALARQIETDGELEDAYHTPSFVE 492

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           ++++   +G G P PVF+     + S  +V   HL++   ++      AI F    T   
Sbjct: 493 LIDN-AVWGQGFPAPVFSGE-FDVLSQSLVKERHLKLQL-ARGRLRFAAIWFNHIDTLPA 549

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             L             L  + W G  R QL V  A+
Sbjct: 550 RAL---------FAYRLVRDTWNGVSRVQLVVEHAA 576


>gi|237739731|ref|ZP_04570212.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           2_1_31]
 gi|229423339|gb|EEO38386.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           2_1_31]
          Length = 852

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 170/581 (29%), Positives = 288/581 (49%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W  L  +    R      +  +  ++  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KW-LLENKINYERIFKNKGEKKLDFVIESLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI N+EKI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DIDIAVKRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++    E A L+I+VDCG  S + + +A   G+D I+ DHH++  +   A+A++N
Sbjct: 114 LNKDAIQSLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  L + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSYKYLAGVGTAFMLVYALYSKLDRLN------DLEKFLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
              NR +V +GL +       G+K L+ +V           + ++GY+I P  NA GR+ 
Sbjct: 228 TSDNRKFVKRGLKLLNNTKWIGIKQLLRKVFPEDWDTREYCSYDVGYLIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I +D  E   +  +L   N  R+ ++  +LE + A++  +   +   ++I+
Sbjct: 288 DAKQAVSLFIEEDGFECLTIIEQLLENNNERKNIQKKILEASIAEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +PS  +  +E +G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGINI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         K+     P  +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFPKELFVKTIKIENILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +  +      I F   
Sbjct: 464 FLRELEILEPYGAKNHTPIFAFKNCEYENLRFTKNSTEHLMLDIKKDNYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 + + +  K++ V   L +  ++    C+L++ D  
Sbjct: 524 DY----YDIIANSKKIDVAFKLKLETFKDRYMCKLQLEDVK 560


>gi|188575987|ref|YP_001912916.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188520439|gb|ACD58384.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 558

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 174/564 (30%), Positives = 272/564 (48%), Gaps = 24/564 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L + D AA  +  AI    +I++ GD
Sbjct: 3   PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSDVAAALLADAIAQQRRILVVGD 58

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 59  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 118

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 119 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 178

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + ++LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R  +G 
Sbjct: 179 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 238

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+ +D  +   +A  
Sbjct: 239 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 298

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 299 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 358

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++   GGHAMAAGL++ 
Sbjct: 359 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQTFGGHAMAAGLSIH 418

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           R         FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 419 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 478

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 479 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 530

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  + +RG    QL V    P 
Sbjct: 531 YRLVADDYRGGTAVQLIVEHCEPA 554


>gi|84624393|ref|YP_451765.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368333|dbj|BAE69491.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 579

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 174/564 (30%), Positives = 272/564 (48%), Gaps = 24/564 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L + D AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSDVAAALLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + ++LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R  +G 
Sbjct: 200 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+ +D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++   A   G++   GGHAMAAGL++ 
Sbjct: 380 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQTFGGHAMAAGLSIH 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           R         FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  + +RG    QL V    P 
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPA 575


>gi|209519984|ref|ZP_03268763.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           H160]
 gi|209499581|gb|EDZ99657.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           H160]
          Length = 568

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 184/584 (31%), Positives = 270/584 (46%), Gaps = 35/584 (5%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77
           V+          L    +  +  ++AR+  +R V   +  +      +  L+P P  L  
Sbjct: 5   VTRPCSPVDTEVLT---RCGMHPVLARLYASRGVCLPEDVET----GLARLVP-PAELKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           CD AA  +  A+    ++++  DYD DGA + A+ +R L    V  +  +P+R+  GYG 
Sbjct: 57  CDAAAALLADALQQQRRMLVVADYDCDGATACAVAVRGLRMFGVRIDYLVPNRMEHGYGL 116

Query: 138 NPSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
            P +++   +       L+ITVD G  S D +  A   GIDV+V DHH    E   A A+
Sbjct: 117 TPDIVDLAARSAAGKPDLLITVDNGIASVDGVAAANALGIDVLVTDHHLPGDELPAARAI 176

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVC 251
           VNPN+         L   GV+F VL+ +   LR+            L  LLDLVAL TV 
Sbjct: 177 VNPNQPGCTFPSKCLAGVGVMFYVLLALRAELRRRGAFGDALPEPRLDGLLDLVALGTVA 236

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGG 309
           DVV L G NR  V +GL   RR       A + R        A   +LG+ +GP +NA G
Sbjct: 237 DVVKLDGNNRVLVAQGLQRIRRGRMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAG 296

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ + +LG   L +DD      LA +LD +N+ RR +E+ M +QA   + T   D   A+
Sbjct: 297 RLSDMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALDDLST--VDPDGAT 354

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF 427
            I +    WH G++G++A RLKEKF RPSF  +  +D      GSGRSI GF +   +  
Sbjct: 355 TITLFNPGWHQGVIGIVAGRLKEKFHRPSFTFAPADDSGVLVKGSGRSIAGFHLRDALDL 414

Query: 428 A--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
               E  ++VK GGHAMAAGLT+   +  R    F+      +         + DG L  
Sbjct: 415 ISKREPDLIVKFGGHAMAAGLTIAAADVPRFTAAFEAVGREWLSEEALARTVETDGELED 474

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
           +      ++ML+ A  +G G P PVF+    ++ S  +V   HL++    +  +   AI 
Sbjct: 475 AYFTPQFVEMLD-AAVWGQGFPAPVFSGE-FEVASQALVKDKHLKLQL-LRGRQRFNAIW 531

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           F    T            R  +   L  + W G  R QL V  A
Sbjct: 532 FNHTDT---------LPARTTIAYRLTSDTWNGVSRVQLIVEHA 566


>gi|125972732|ref|YP_001036642.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum ATCC 27405]
 gi|281416918|ref|ZP_06247938.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum JW20]
 gi|125712957|gb|ABN51449.1| putative exonuclease, RecJ-like protein [Clostridium thermocellum
           ATCC 27405]
 gi|281408320|gb|EFB38578.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           thermocellum JW20]
          Length = 763

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 159/554 (28%), Positives = 265/554 (47%), Gaps = 25/554 (4%)

Query: 40  PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
            ++VAR+  NR   + +  +  LNP +  +   P    D  +A  RI++A  N EKI ++
Sbjct: 25  DELVARIFYNRGYKNPETIRQMLNPELY-VPTKPDEFPDMPRAVDRILRAADNEEKICVY 83

Query: 99  GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           GDYDVDG  S   ++  L+  +     ++PDR  +GYG N  ++ K   +G  LIIT DC
Sbjct: 84  GDYDVDGVTSTVTLVECLNFFTSKVVYHVPDRFTEGYGMNEEIVRKLAQDGVSLIITCDC 143

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G ++   +  A   G+DV++ DHH V  E  PA A++NP  L++     ++   G+V+ +
Sbjct: 144 GISNVREITLAKELGMDVVLTDHHTVPDELPPADAILNPKLLEEGHRARNISGCGMVYFL 203

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278
            + +                   LD++AL+ + DVV L G NR  + K L         G
Sbjct: 204 CLALLEKKG------FPDRAERFLDMLALSLIADVVSLNGENRYLLQKALPALFNTRRIG 257

Query: 279 LKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           L+ L+E    +  +   E++ + I P INA GR+  + L   L +  D ++  ++A K+D
Sbjct: 258 LRQLLEVAERNGKLENEEDVAFQIAPRINAAGRMDTARLPVELFLCQDLEKARIMAEKID 317

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
            LN  R+ ++ +++++A   V T+    +  +++V+  + WH GI+G+ A R+ E + +P
Sbjct: 318 SLNTERKRVQQSIVDEAVEMVETRK---KNKTILVLYKEYWHHGIIGIAAGRICELYRKP 374

Query: 398 SFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456
           +   S +EDG   +GS RSIE  +I +++      G L+K GGH+ AAGL++ + +    
Sbjct: 375 AILFSLKEDGITAVGSARSIEEVNIYELIKEC--SGKLLKFGGHSQAAGLSIRKDDIEEF 432

Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
               +  A N             D  L    +N  L D ++SAGPYG G   P F   N 
Sbjct: 433 ISQIEMEAENRYFIKDMVN-VNADMELGIEDINEELYDRIQSAGPYGEGFEAPCFCIRNV 491

Query: 517 KLQSIRVVNLAHLQMTFESQDSETLQAI-AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
            + S R+    H  M  E Q    + A+  F    +          G+   VT  +  N 
Sbjct: 492 IVLSDRMTEKKHHIMVLEDQKGNRIPAVKWFGEDES--------FEGRCFDVTCRIGRNN 543

Query: 576 WRGSKRCQLRVLDA 589
           +      QL +   
Sbjct: 544 YSKDAGIQLTLEYM 557


>gi|269122659|ref|YP_003310836.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella
           termitidis ATCC 33386]
 gi|268616537|gb|ACZ10905.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella
           termitidis ATCC 33386]
          Length = 864

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 165/587 (28%), Positives = 284/587 (48%), Gaps = 32/587 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIP---DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           +W              I + + +P   DI++ +L +RN+S      +FLNPS+  +  D 
Sbjct: 5   KWNFKKVNN-----AEIAKNNELPLDKDILS-ILYSRNISNKKDIIEFLNPSLSNIQ-DH 57

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRI 131
            +L D  K+   I  A+ N + I I+GDYDVDG  S +L+          N N YIP R 
Sbjct: 58  HLLKDLKKSVDIIFDAMKNKKNIWIYGDYDVDGITSTSLLYLVFQKLGYNNINYYIPIR- 116

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG N + +E+  N G  LIITVDCG TS++ + +A +  + VI+ DHH++  +   A
Sbjct: 117 DEGYGLNKNAIEQIKNSGGDLIITVDCGITSFEEIDFANSLKLPVIITDHHEINKKLPKA 176

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++NP R D+     +L   GV FL+   ++    Q +      ++ SLLDL A+ TV 
Sbjct: 177 SAVINPKREDNEFSFKYLAGVGVAFLLAAGLFEEAGQKD------EVYSLLDLTAIGTVA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGG 309
           D+VPL+  NR +V  GL        PGLK L   +        T  ++G+++ P  NA G
Sbjct: 231 DIVPLVQENRIFVKFGLEQLLHTEIPGLKYLCSLIFDPGKKEYTTYDVGFILAPVFNAAG 290

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+ ++ +  +LL +D+ +E+E+++ +L   N  R++++  ++   E  +  Q + +    
Sbjct: 291 RLKDAKMVVKLLTTDNKREIEIISKELISKNNERKVLQEKIIADVEENI--QKNSLNDNY 348

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFA 428
           VIV     +H G++G++A+++ + + +P+  +  +ED    + S RSIEGF++  + +  
Sbjct: 349 VIVDYSPEYHHGVIGIVASKIIDTYYKPTVIMEVKEDEDIAVASARSIEGFNL--IEALQ 406

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
               + +K GGHA AAG T+   N          +A   +       +  ID  +    V
Sbjct: 407 TMPELFLKFGGHAGAAGFTIPVKNIKSFIKKINDYAKKKLDENDFVKLINIDKEIPIQKV 466

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546
           +     +++   P+G GNPNP FA  N  L++I+ +     HL    +     +  A+ F
Sbjct: 467 SYEFYQIIDLLKPFGFGNPNPTFAVKNIILENIKHIGQNKNHLMFNIKKNGFVSRNAVWF 526

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                    F   ++     +   L V  +      ++ V D    E
Sbjct: 527 GAG----SNFKDLNQNIFYDLAFKLKVEDYMDKSYTKVYVDDIKNSE 569


>gi|33596663|ref|NP_884306.1| single-stranded-DNA-specific exonuclease [Bordetella parapertussis
           12822]
 gi|33573364|emb|CAE37348.1| single-stranded-DNA-specific exonuclease [Bordetella parapertussis]
          Length = 578

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 270/565 (47%), Gaps = 27/565 (4%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           +   I  +++R+   R V          P    L+P P  LT    AA  +  AI   ++
Sbjct: 32  EAAGIHPLLSRLWAARGVIHPEQTRMAWP---ALLP-PDRLTHSAHAAAVLADAIEQGKR 87

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KFINEGAQ 151
           ++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +P+++E   +       
Sbjct: 88  LLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPD 147

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           +IITVD G  S D +  A   GI V++ DHH        A A+VNPN+     G  HL  
Sbjct: 148 IIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAG 207

Query: 212 AGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
            GV+F +++ +   LR+      +    L +L DLVAL TV DVV L   NR  V +GL 
Sbjct: 208 VGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQ 267

Query: 270 VARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R  +  PG++AL           +  +LG+ +GP INA GR+ + +LG   L +DD  
Sbjct: 268 RMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEA 327

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           +   +A +LD +N+ RR +E+ M +QA A    +  D    + + V    WH G+VGL+A
Sbjct: 328 QALEMARELDNINRERRTIEAEMRDQALA--AMEAPDAAAGATVCVFDPGWHQGVVGLVA 385

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445
           +RLKEKF RP+ A +   + +  GSGRSI    +   +        G++ K GGHAMAAG
Sbjct: 386 SRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAG 445

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+   +F      F      +       P+ + DG L +   N  +  +L+    +GAG
Sbjct: 446 LTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQ-QVWGAG 504

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
              P+F      ++S R+V   HL++  E +  +   AI F            QS  +R+
Sbjct: 505 FAAPLFLDE-FTVRSQRLVGGKHLKLALE-RGHQRFDAIWFGHD---------QSLPERI 553

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590
                L  N W G    QL +  A+
Sbjct: 554 QAAYRLEQNIWNGMVSVQLVIEHAA 578


>gi|58582507|ref|YP_201523.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427101|gb|AAW76138.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 579

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 173/564 (30%), Positives = 271/564 (48%), Gaps = 24/564 (4%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+   R V+         P +  L+  P +L + D AA  +  AI    +I++ GD
Sbjct: 24  PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSDVAAALLADAIAQQRRILVVGD 79

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA + A+ +R L      + +  +P+R+V GYG +P+L+++       +++TVD G
Sbjct: 80  FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 139

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              +  +  A  +G  V+V DHH       PA A+V+PN  +D      L   GV+F VL
Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 199

Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276
           + + ++LR           DL  LLDLVA+ TV D+VPL   NRA V  GL   R  +G 
Sbjct: 200 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259

Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            GL+ALI+        ++A ++G+ +GP +NA GR+ +  LG  LL+ +D  +   +A  
Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 319

Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393
           L+ +N  RR ++  M + AE  V     D          +    WHPG++GL+A++LK++
Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 379

Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
             RP  A++  E G     GS RSI G  I  +++       G++   GGHAMAAGL++ 
Sbjct: 380 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDSRHPGLIQTFGGHAMAAGLSIH 439

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           R         FQ     +V A +       DG L A  ++    + L  AGP+G G P P
Sbjct: 440 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 499

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F     ++   RV+   HL++T       E L AI F  +       L       + + 
Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 551

Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592
             L  + +RG    QL V    P 
Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPA 575


>gi|148826178|ref|YP_001290931.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittEE]
 gi|148716338|gb|ABQ98548.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittEE]
          Length = 531

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 252/496 (50%), Gaps = 13/496 (2%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +S++ + +   +GI V+V DHH       PA A+VNPN          L   GV F +
Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194

Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275
           ++ +    R+          +   LLDLVAL TV DVVPL   NR    +GLM  R R+ 
Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARRC 254

Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  +   LA+
Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393
            LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K++
Sbjct: 315 DLDELNQMRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451
           + RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL++   
Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           +F      F +   + +       V   DG LN++  N+   ++++S G +G G P P F
Sbjct: 435 HFADFQHLFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494

Query: 512 AFPNHKLQSIRVVNLA 527
                K+   R +   
Sbjct: 495 DGE-FKILDQRAIGQN 509


>gi|262066587|ref|ZP_06026199.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379722|gb|EFE87240.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium
           periodonticum ATCC 33693]
          Length = 852

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 167/581 (28%), Positives = 286/581 (49%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    R      +  +  ++  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKINYERIFENKGEKKLDFVIESLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI N+EKI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DIDIAVKRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++    E A L+I+VDCG  S + + +A   G+D I+ DHH++  +   A+A++N
Sbjct: 114 LNKDAIQSLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F++   +Y  L + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSYKYLAGVGTAFMLTYALYSKLDRLN------DLEKFLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
              NR +V +GL +       G+K L+ ++           + ++GY+I P  NA GR+ 
Sbjct: 228 TSDNRKFVKRGLKLLNNTRWIGIKQLLRKIFPDDWDTREYCSYDVGYLIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I +D  E   +  +L   N  R+ ++  +LE +  ++  +   +   ++I+
Sbjct: 288 DAKQAVSLFIEEDGFECLTIIDQLLTNNTERKNIQKKILEASITEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +PS  +  +E +G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGLNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         K+     P  +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFPKELFVKTIKIENILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +  +      I F   
Sbjct: 464 FLRELEILEPYGAKNHTPIFAFKNCEYENLRFTRNSTEHLMLDIKKGNYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 + + +  K++ V   L +  ++    C+L++ D  
Sbjct: 524 DY----YDIIASSKKIDVAFKLKLETFKDRYMCKLQLEDVK 560


>gi|258453611|ref|ZP_05701589.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A5937]
 gi|257864342|gb|EEV87092.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           aureus A5937]
          Length = 693

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 147/526 (27%), Positives = 255/526 (48%), Gaps = 25/526 (4%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GYGP
Sbjct: 1   MTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V+P
Sbjct: 61  NELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                      LC AGV + +   +   +                 LVA+ T+ D+V L 
Sbjct: 121 MHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
             NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++L 
Sbjct: 170 DENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDASLA 229

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             LL++DD +E   LA +++  N+ R+ + + + E+A A   T+         +++  + 
Sbjct: 230 CELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAKEN 287

Query: 378 WHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
           WH G++G++A+++ E F  P+  ++   E     GS RSI+   +      +  + ++ K
Sbjct: 288 WHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELIAK 345

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH MAAG+T++  N   L +   K+   +       PV  +D +L  + + I  I  +
Sbjct: 346 FGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIRDM 405

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
               P+G     P+F   +  + S++ +     HL++T    +   L    F   G    
Sbjct: 406 NRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHLEP 461

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           E   +   + +++ G + +N W G++  QL + D +  E      +
Sbjct: 462 ELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 504


>gi|258404430|ref|YP_003197172.1| single-stranded-DNA-specific exonuclease RecJ [Desulfohalobium
           retbaense DSM 5692]
 gi|257796657|gb|ACV67594.1| single-stranded-DNA-specific exonuclease RecJ [Desulfohalobium
           retbaense DSM 5692]
          Length = 577

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 168/587 (28%), Positives = 268/587 (45%), Gaps = 27/587 (4%)

Query: 17  RWVSLLGQEGINRAL--AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL 73
           +W+          A      ++  I   +  +L  R +S       FL+P +R L P P 
Sbjct: 5   QWIFREQPASEKTAEFSTWAKQLEISPFLCDLLWQRGLSSPQEMDVFLSPGLRHLAP-PH 63

Query: 74  ILTDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             +  ++AA  +  A+      + ++GDYDVDG  + AL+   L         ++P+R+ 
Sbjct: 64  TWSGLNEAAAVLAAALEQDTGPLAVWGDYDVDGITATALVTEILRGRGYAVLPHLPNRME 123

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYG N + +E   ++G + ++TVDCG    +A+  A   G+ V+V DHHQ  +   PA 
Sbjct: 124 DGYGLNTAGIEALYDQGVRALLTVDCGMGDLEAITRAKELGMRVVVSDHHQPHATLPPAD 183

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+VNP    D      L   G  F ++  + R+L          DL   LDLVAL T+ D
Sbjct: 184 AIVNPCV--DACPCPELAGVGTAFFLMAALNRLLP-----GTPSDLRPSLDLVALGTIAD 236

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGR 310
           VV L G NR     GL++      PG+ AL E       +PI A  + + + P INA GR
Sbjct: 237 VVSLRGQNRIVAKNGLLLLSEGSRPGIYALKEASRLPGKAPIGAGQVAFGLAPRINAAGR 296

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +G +     LL++ D    + LA KL+  NQ RR  E  +LEQA  +V  +         
Sbjct: 297 MGSATEALDLLLAPDLATAQPLAAKLEAANQERRTCEDGILEQAVTQVEERGVTEGL--- 353

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
            V+   +WH GI+G++A+R+ E+F RP+  ++    G   GSGRSI   D+   ++    
Sbjct: 354 -VLADAQWHQGIIGIVASRVVERFYRPTILLTRHN-GYWKGSGRSIVDVDLHAALTEC-- 409

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L   GGH  AAGL++   N       F +     +      P  K+DG +    +++
Sbjct: 410 ADLLAGFGGHPQAAGLSLTEANLKPFTQRFSQAISKQLGGAEPLPRLKLDGHIPFGQIDL 469

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY 549
            LI  +E   P+G GNP PVF     ++Q   V    H+ +  +  +    L   A+R  
Sbjct: 470 DLIREIELLQPFGMGNPQPVFCSEPLQVQKHNVFGKKHVSLQLQDPKSGIVLTGKAWRQA 529

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGH 595
                      +G+ + +     +N+++G     L + D   P +  
Sbjct: 530 EA----LTPSIQGETVQLAFTPRLNHYQGLTSIDLDIKDWRLPHDRE 572


>gi|257125176|ref|YP_003163290.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           buccalis C-1013-b]
 gi|257049115|gb|ACV38299.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           buccalis C-1013-b]
          Length = 997

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 152/577 (26%), Positives = 275/577 (47%), Gaps = 34/577 (5%)

Query: 35  QKHAIPDIVA----RVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89
           +   +  ++     ++L +R ++ +   ++FLNP +  +  +P  L D +K    I +AI
Sbjct: 47  ENTNLSSVIDNDILKILYSRGITTEKEIREFLNPKLGNIQ-NPYGLQDMEKTVLEIEKAI 105

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINE 148
              + I I+GDYDVDG  S +++   L      N N YIP R  +GYG N   ++K    
Sbjct: 106 KEQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKKS 164

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYALVNPNRLDDLSGQG 207
           GA L+ITVDCG T++  +++A +  + +I+ DHH     +   A  +VNP R ++     
Sbjct: 165 GADLVITVDCGITAFPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENDFSFE 224

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
            L   G +F+V++ +Y  + +             LDLVA+ TV D+VPL+  NR     G
Sbjct: 225 FLAGVGTIFMVILCLYERIGKK------AKAYKYLDLVAIGTVADIVPLMEENRILTKFG 278

Query: 268 LMVARRQGNPGLKAL--------IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           L    R  N GL+ L            N  +   + ++G++I P  NA GR+ ++ +  +
Sbjct: 279 LEQLSRSKNKGLRFLLYKLFSIQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAKMVVK 338

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LLISD+ +E+E++  +L   N  R+ +++ ++E+ E  +  +  D+++  VIV     +H
Sbjct: 339 LLISDNDREIEIIVKELINKNFERKELQNEIVEKVEKHI--EESDLKEDYVIVDYSPEYH 396

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
            G++G+ A+++ +K+ +P+  I  +ED G  +GS RSI  F+I  + +      + VK G
Sbjct: 397 HGVIGIAASKIVDKYYKPAIIIEVKEDEGIAVGSCRSIGNFNI--LEALQSMPELFVKFG 454

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GH+ AAG T+   N         KFA   +       + +ID  +    ++     ++E 
Sbjct: 455 GHSGAAGFTIGIKNLELFKKKINKFAKTKLKEEDFVKIIEIDKQIPIQKISYEFFQIIEL 514

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
             P+G GNP P F   N   ++I+ +     H+    + +      A+ F         F
Sbjct: 515 LKPFGFGNPMPTFRTNNVLFENIKFIGENKNHIMFDIKQKGFFNRNAVWFNSGEY----F 570

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              +      +   L    ++     ++ + D    +
Sbjct: 571 KELNENLFYDIVYKLKTEMFQDRYYTKVYIEDVKVSK 607


>gi|319787360|ref|YP_004146835.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465872|gb|ADV27604.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 575

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 176/565 (31%), Positives = 270/565 (47%), Gaps = 22/565 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R            P +  L+P P  L     A   +  AI +   I++
Sbjct: 23  NVPPLLRRIYAARGADRFELA---RPRLSDLLP-PDALGGLAAALELLAAAIRDGRHIVV 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L        +  +P+R+V GYG +P+L+++      +L++TV
Sbjct: 79  VGDFDCDGATACAVGVRGLRMLGAKRVSHAVPNRMVHGYGLSPALVDELAALQPELLVTV 138

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH    +  PA A+VNPN   D      L   GV+F
Sbjct: 139 DHGIACHAGVAAARARGWQVLVTDHHLPGQQLPPADAIVNPNCAGDAFPSKCLAGVGVIF 198

Query: 217 LVLVLIYRILRQDNKVPL-NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274
            VLV + R LRQ    P    DL +LLDLVA+ T+ D+VPL   NRA    GL   R  Q
Sbjct: 199 YVLVALRRHLRQAGAFPQGEPDLSTLLDLVAVGTIADLVPLDANNRALAAAGLRRLRAGQ 258

Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
           G  GL+AL+E        +TA ++G+ +GP +NA GR+ +  LG   L++DD      LA
Sbjct: 259 GCAGLRALVEVCGRDMACLTAADIGFAVGPRLNAAGRLEDMALGIECLLTDDPARARELA 318

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
             L+ +N  RR ++ AM + AEA +   +  +        +    WHPG+VGL+A+++KE
Sbjct: 319 GILNDINAERRAVQQAMTDDAEAALSRARIGEGAPPLAPCLFDPEWHPGVVGLVASKMKE 378

Query: 393 KFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448
           +  RP  A +  E G     GS RSI GF I   ++   A   G++ + GGHAMAAGLT+
Sbjct: 379 RLHRPVLAFAPAEPGAQVLRGSARSIPGFHIRDALAAVDARHPGLVQRFGGHAMAAGLTL 438

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  N       +   A   +   +       DG L     +    + L   GP+G G P 
Sbjct: 439 DLANLPAFEQAWLAHAQAALDDGLLQAELLSDGELLPQEFDRFHAEALRDGGPWGQGFPE 498

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           P+F   + ++   R +   HL++     +    L AI F  +          +    +H+
Sbjct: 499 PLFDG-HFEVLEWRPIGERHLRLRLRHPERREPLAAIHFGGWQGG-------APAPHLHL 550

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L  + +RG    QL V  A+P 
Sbjct: 551 AYRLQPDDYRGGAAVQLVVEHAAPA 575


>gi|87124621|ref|ZP_01080469.1| hypothetical protein RS9917_00327 [Synechococcus sp. RS9917]
 gi|86167500|gb|EAQ68759.1| hypothetical protein RS9917_00327 [Synechococcus sp. RS9917]
          Length = 622

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 157/574 (27%), Positives = 262/574 (45%), Gaps = 26/574 (4%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W           A        +P  +  VL  R +     +D L   +  L         
Sbjct: 2   WQLPPACGEDPLAAV-----PLPLPLRAVLARRGLDRAQVEDLL--QMPPLPEATEHFPQ 54

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
              A RR+ +A   +E + I GDYD DG  S AL++R L     N    IP R+ DGYG 
Sbjct: 55  LAVAVRRLRRACDGAEAVAICGDYDADGMTSTALLIRALRALGANPVAAIPSRMDDGYGL 114

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           NP ++E+   EG +L++TVD G ++ +AL+ A  +G++VI+ DHH + S    A AL++P
Sbjct: 115 NPGMVERLHGEGIRLLVTVDNGVSAAEALKAAAQRGMEVILTDHHTLPSPPPEALALIHP 174

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
               + S    L   G+ +++   + + + +   +          DL  + T+ D+ PL 
Sbjct: 175 ATTPEASPYRGLAGVGLAYVLGHALAQAMGRPEAIETAR------DLFCVGTIADMAPLT 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGESNL 316
           G NR ++ +GL    R    GL+AL +   +       + +G+ I P INA GR+G+  L
Sbjct: 229 GANRNWLRQGLATLHRSRCEGLRALQQLAGLEETPLRADAIGFQIAPRINAVGRLGDPRL 288

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL +DD  E   LA + D LN+ RR +  A+  +A A +    D +  A  +++   
Sbjct: 289 VVELLTADDPGEAIELARQCDALNRQRRELCDAIEAEALALLDADGDSL--APFLLLAQG 346

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G++G++A+RL E+F RP   ++ E DG+   S R+ EGF + + ++   E   L +
Sbjct: 347 HWHHGVIGIVASRLMERFQRPVALLAGEGDGRLRASVRAPEGFAVDQALTSCAEH--LER 404

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A G TV       L       A     +       + + +L    ++      L
Sbjct: 405 FGGHPAAGGFTVRAEAVHALHAQLNGLALAWQQSQPLGQPVRPEALLALDQIDRRFWQHL 464

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
            +  P+G G+ +PVF   + ++   R +   HL+++   Q     + IA+R         
Sbjct: 465 LALEPFGVGHRSPVFWARDCQVLEERRLRGGHLRLSLR-QGEARCEGIAWRWD------- 516

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 +R+ +   + +N W G +R QL +L   
Sbjct: 517 SPGPVPERLDLAFRVGLNRWNGEERLQLEILALR 550


>gi|121610124|ref|YP_997931.1| single-stranded-DNA-specific exonuclease RecJ [Verminephrobacter
           eiseniae EF01-2]
 gi|121554764|gb|ABM58913.1| single-stranded-DNA-specific exonuclease RecJ [Verminephrobacter
           eiseniae EF01-2]
          Length = 576

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 176/584 (30%), Positives = 259/584 (44%), Gaps = 30/584 (5%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
           E   RA+   ++  +  ++AR+   R V    AKD L+  +  L+P P  L     AAR 
Sbjct: 7   EIPPRAVWTLEQAGVHPLLARLYAARGVR---AKDELDDDLARLLP-PQGLKGIAAAARL 62

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143
           +  A+   ++++I  DYD DGA + A+ +R L      + +  +PDR+ DGYG  P +  
Sbjct: 63  LADAVARDQRLLIVADYDCDGATACAVGVRGLRLLGARHVDYLVPDRMTDGYGLTPPIAR 122

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
           +    GA L+ITVD G  S   +  A   G+ V+V DHH    E   A A+VNPN+    
Sbjct: 123 RVKERGADLLITVDNGIASVAGVAEAKALGLSVLVTDHHLPGPELPAADAIVNPNQPGCG 182

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDN--KVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                L   GV+F VL+ +   LR            L  LL LVAL TV DVV L   NR
Sbjct: 183 FESKALAGVGVMFYVLLALRSELRARALLNADTQPRLDPLLALVALGTVADVVKLDANNR 242

Query: 262 AYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
             V +GL   R    P   A         +   T  + G+ +GP INA GR+ +  LG  
Sbjct: 243 RLVAQGLRRIRTGTLPAGVAALFTAAGRKAQAATTFDFGFALGPRINAAGRLADMTLGIE 302

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI-QQASVIVVEGDRW 378
            L++DDS     LA  LD +N+ RR +E  M  QA       C         I V    +
Sbjct: 303 CLLTDDSGRAAELAGTLDRINRERRTIEDGMRGQAMLLAENLCAGGAAPPPAISVFDPDF 362

Query: 379 HPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432
           H G+ G++A+R+K+K  RP+F      +  ++ +  GSGRSI GF +   +        G
Sbjct: 363 HEGVAGIVASRIKDKLHRPAFVFAVSRAPGKEHELKGSGRSIAGFHLRDALDLVAKRHPG 422

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L+K GGHAMAAG T+    F        + A   + A   T   + DG L        +
Sbjct: 423 VLLKFGGHAMAAGCTLAAQTFAVFEQALAQVAQEWLDAATLTRRIETDGPLAREYCRAEM 482

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYG 550
           +D L     +G G   P F     ++ S R+V   H  L++    Q    +  I F    
Sbjct: 483 VDTLHR-EVWGQGFAPPTF-SEEVEVLSQRLVGDKHPALKLKLRHQ-GHPVDGIWFGHTE 539

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                        R+ +   L VN ++G ++ Q  +  A   + 
Sbjct: 540 ---------PLPARVLLAFRLDVNEYQGERKVQFLIEGAQLSQS 574


>gi|294783140|ref|ZP_06748464.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp.
           1_1_41FAA]
 gi|294480018|gb|EFG27795.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp.
           1_1_41FAA]
          Length = 852

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 167/581 (28%), Positives = 286/581 (49%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    R      +  +  ++  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIV-ENKINYERIFENKGEKKLDFVIESLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI N+EKI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DIDIAVKRIFKAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++    E A L+I+VDCG  S + +  A   G+D I+ DHH++      A+A++N
Sbjct: 114 LNKDAIQSLKEEEANLVISVDCGINSIEEINLANELGLDFIITDHHEIIGNLPKAFAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  L + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSYKYLAGVGTAFMLVYALYSKLDRLN------DLEKFLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
              NR +V +GL +       G+K L+ +V           + ++GY+I P  NA GR+ 
Sbjct: 228 TSDNRKFVKRGLKLLNSTRWIGIKQLLRKVFPEDWDTREYCSYDVGYLIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I +D  +   +  +L   N  R+ ++  +LE + A++  +  ++   ++I+
Sbjct: 288 DAKQAVSLFIEEDGFKCLTIIEQLLANNSERKNIQKKILEASVAEI--EKKELYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +PS  +  +E +G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGLNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         K+        +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFSKDLFVKNIKIENILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +  +      I F   
Sbjct: 464 FLRELEILEPYGAKNHTPIFAFKNCEYENLRFTRNSTEHLMLDIKKDNYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 + + +  K++ V   L +  ++    C+L++ D  
Sbjct: 524 DY----YDIIANSKKIDVAFKLKLETFKDRYMCKLQLEDIK 560


>gi|325981202|ref|YP_004293604.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosomonas sp.
           AL212]
 gi|325530721|gb|ADZ25442.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosomonas sp.
           AL212]
          Length = 590

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 169/575 (29%), Positives = 264/575 (45%), Gaps = 36/575 (6%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
              +P ++AR+   R +        L   +  L+P    L +    A  +  AI   +++
Sbjct: 19  DCGLPPVLARIFAARGI---ENSSELETELIRLIP-FAQLKNITVTAALLADAIAAKKRL 74

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLII 154
           +I  DYD DGA + A+ +R L       +  +P+R   GYG  P ++      +    +I
Sbjct: 75  LIIADYDSDGATACAVGIRILRKFGATIDYLVPNRFEFGYGLTPEIVHLAHETKQPDFLI 134

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  S + +  A   G+ VI+ DHH    E   A A++NPN+ +       +   GV
Sbjct: 135 TVDNGIASVEGVSTANRLGMQVIITDHHLPGDELPAAMAIINPNQPNCPFPSKSIAGVGV 194

Query: 215 VFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           +F +++ +   LRQ          +L   LDLVAL TV DVV L   NR  V +GL   R
Sbjct: 195 IFYLMLALRAELRQRGAFATGQEPNLAGFLDLVALGTVADVVKLDSNNRILVQQGLGRIR 254

Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           + +   G+ AL++        I+   LG+M+GP +NA GR+ + +LG   LI+DD     
Sbjct: 255 KGRACAGINALLQISRRDYAQISTYELGFMLGPRLNAAGRLDDMSLGIECLITDDEAHAL 314

Query: 331 MLAMKLDVLNQNRRLMESAMLEQA----EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            +A +LD LN+ RR +ES M E A    E  + T+ ++IQ A  I +    WH G++G+L
Sbjct: 315 EIAKQLDELNRQRREIESTMQESALIKLEHILKTRDEEIQTAYSICLFDQDWHQGVIGIL 374

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A+R+K+K+ RP    +    G+  GSGRSI GF +   +         ++ K GGHA AA
Sbjct: 375 ASRIKDKYHRPVIIFAPGSHGEIKGSGRSINGFHLRDALDLVAKRYPELIRKFGGHAAAA 434

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           GLT+   +  +  D F+  A  ++     T V + DG L  + +N+ L   L+    +G 
Sbjct: 435 GLTIHSDDLEKFRDAFEHVAQILLTPANLTQVIETDGDLELAEINLELAAYLDR-QVWGQ 493

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQ-------MTFESQDSET---LQAIAFRVYGTPLG 554
           G P P F      ++S R+V   HL+        T   Q  ++      I F        
Sbjct: 494 GFPQPSFNAR-FYVESQRIVGEKHLKLKLRKLDCTDRDQSRKSDNAFDGILF-------- 544

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            F        +     L VN + G    Q  +   
Sbjct: 545 -FQSDPLPDIIDAVYRLQVNEYNGKTSLQFLLEHW 578


>gi|88808715|ref|ZP_01124225.1| RecJ exonuclease [Synechococcus sp. WH 7805]
 gi|88787703|gb|EAR18860.1| RecJ exonuclease [Synechococcus sp. WH 7805]
          Length = 631

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 158/577 (27%), Positives = 271/577 (46%), Gaps = 27/577 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W      +GI    A     A+P  +  VL  R + + +  +  L+        D   
Sbjct: 8   QQWRLPRPIDGIPLDRA-----ALPQPLRAVLYRRGLLTTEDVEALLSDQDPPAPHD--H 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                 A  R+  A  + E + + GDYD DG  S AL++R            IP R+ DG
Sbjct: 61  FPQLAPALARLRTACESGEALAVCGDYDADGMTSTALLLRAFRCLGARPKAAIPSRMDDG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG NP ++E+   EG +L+ITVD G  + +AL+ A +  +DVI+ DHH +  ++  A AL
Sbjct: 121 YGLNPGMVEQLHAEGIRLLITVDNGVAAKEALERAEDLEVDVILTDHHTLPDQQPKAMAL 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P    + S    L   G+ ++V   +   + +   +  +       DL  + TV D+ 
Sbjct: 181 IHPATTPEKSPYRSLAGVGLAYIVARTLALEMNRPEAIANSR------DLFCIGTVADMA 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR+ + +GL    R   PG++AL +       P+ A+++G+ + P INA GRIG+
Sbjct: 235 PLTGANRSLLKEGLKHLHRSSCPGVQALQQLAGLGDRPLIADDIGFQLAPRINAVGRIGD 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   LL ++D  +   L  + DVLN+ RR +  A+  +A A +  + D     S +++
Sbjct: 295 PVLVVDLLTAEDQNQAYELGRRCDVLNRQRRDLCDAIEAEAIALL--ESDPSPLPSFVLL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++AARL E++ RP+  ++ + +G    S R+ EGF + + +       +
Sbjct: 353 AQSHWHHGVIGIVAARLVERYQRPAALLAADGEGLMRASVRAPEGFAVDEALRNC--GHL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  A G TV+      L +   + A   +       + + + +L    +N  L 
Sbjct: 411 LERFGGHPAAGGFTVQASAVTELHEELNQLATAWIDQRGQGLLVEPEALLTLEEINHDLW 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             L+   P+GAG+P P+F     ++     +   H ++T E Q+    QAI +R   T  
Sbjct: 471 AGLQKLEPFGAGHPKPLFWSRGCRVTDQHFLRGGHRRLTLE-QNGTERQAIFWRWPAT-- 527

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 +  + + +   +  N+WRG  R QL +    
Sbjct: 528 -----ATLAQTIDLAYRVTQNHWRGETRFQLDIQALR 559


>gi|148239447|ref|YP_001224834.1| single-stranded DNA-specific exonuclease [Synechococcus sp. WH
           7803]
 gi|147847986|emb|CAK23537.1| Single-stranded DNA-specific exonuclease [Synechococcus sp. WH
           7803]
          Length = 631

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/579 (27%), Positives = 267/579 (46%), Gaps = 27/579 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W       G+       +  A+P+ +  VL+ R + +    +  L+        D   
Sbjct: 8   QQWRLPRPIAGLPL-----EGLALPEPLRAVLIRRGMSTSADVEALLSDQAPPSPHD--H 60

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                 A  R+  A    E + + GDYD DG  S AL++R       N    IP R+ DG
Sbjct: 61  FPQLAAAIARLKTACQTGESLAVCGDYDADGMTSTALLLRAFRVLGANPKAAIPSRMDDG 120

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG NP ++E+   EG +L+ITVD G  + +ALQ A +  +DVI+ DHH +  +   A AL
Sbjct: 121 YGLNPGMVEQLHAEGIRLLITVDNGVAATEALQRADDLAVDVILTDHHTLPDQPPKAMAL 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P    + S    L   G+ ++V   +   + +   +  +       DL  + TV D+ 
Sbjct: 181 IHPATTPEDSPYQGLAGVGLAYIVAHTLALEMNRPEAIASSR------DLFCIGTVADMA 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR+ + +GL    R   PG++AL +       P+ A+++G+ + P INA GRIG+
Sbjct: 235 PLTGANRSLLKEGLKHLHRSRCPGVQALQQLAGLGERPLVADDIGFQLAPRINAVGRIGD 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   LL ++D  +   L  + DVLN+ RR +  A+  +A A +  + D       +++
Sbjct: 295 PVLVVDLLTAEDQDQAYELGRRCDVLNRQRRELCDAIEAEAIALL--ESDPSPLPPFLLL 352

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WH G++G++AARL E++ RP+  ++ + DG    S R+ EGF + + +       +
Sbjct: 353 AQGHWHHGVIGIVAARLVERYQRPAALLAADGDGLMRASVRAPEGFAVDEALKHC--GHL 410

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  A G TV       L     K A   +       + + + +L    +N  L 
Sbjct: 411 LERFGGHPAAGGFTVHASAVTELHAGLNKLAATWIEQRGEGLLVEPEALLTLEEINHDLW 470

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             L+   P+GAG+P P+F     ++   + +   H ++T E Q+    QAI +R      
Sbjct: 471 AGLQKLEPFGAGHPKPLFWSRGCRVADQQSLRGGHRRLTLE-QNGTERQAIIWRWPAG-- 527

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 +  + + +   L  N+WRG  R QL V      
Sbjct: 528 -----TAIAQTIDLAYRLTQNHWRGETRFQLEVQALRTH 561


>gi|33592242|ref|NP_879886.1| single-stranded-DNA-specific exonuclease [Bordetella pertussis
           Tohama I]
 gi|33571887|emb|CAE41403.1| single-stranded-DNA-specific exonuclease [Bordetella pertussis
           Tohama I]
 gi|332381659|gb|AEE66506.1| single-stranded-DNA-specific exonuclease [Bordetella pertussis CS]
          Length = 566

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 270/565 (47%), Gaps = 27/565 (4%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           +   I  +++R+   R V          P    L+P P  LT    AA  +  AI   ++
Sbjct: 20  EAAGIHPLLSRLWAARGVIHPEQTRMAWP---ALLP-PDRLTHSAHAAAVLADAIEQGKR 75

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KFINEGAQ 151
           ++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +P+++E   +       
Sbjct: 76  LLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPD 135

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           +IITVD G  S D +  A   GI V++ DHH        A A+VNPN+     G  HL  
Sbjct: 136 IIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAG 195

Query: 212 AGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
            GV+F +++ +   LR+      +    L +L DLVAL TV DVV L   NR  V +GL 
Sbjct: 196 VGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQ 255

Query: 270 VARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R  +  PG++AL           +  +LG+ +GP INA GR+ + +LG   L +DD  
Sbjct: 256 RMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEA 315

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           +   +A +LD +N+ RR +E+ M +QA A    +  D    + + V    WH G+VGL+A
Sbjct: 316 QTLEMARELDNINRERRTIEAEMRDQALA--AMEAPDAAAGATVCVFDPGWHQGVVGLVA 373

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445
           +RLKEKF RP+ A +   + +  GSGRSI    +   +        G++ K GGHAMAAG
Sbjct: 374 SRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAG 433

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+   +F      F      +       P+ + DG L +   N  +  +L+    +GAG
Sbjct: 434 LTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQ-QVWGAG 492

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
              P+F      ++S R+V   HL++  E +  +   AI F            QS  +R+
Sbjct: 493 FAAPLFLDE-FTVRSQRLVGGKHLKLALE-RGHQRFDAIWFGHD---------QSLPERI 541

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590
                L  N W G    QL +  A+
Sbjct: 542 QAAYRLEQNIWNGMVSVQLVIEHAA 566


>gi|19703716|ref|NP_603278.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713842|gb|AAL94577.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 844

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/580 (27%), Positives = 281/580 (48%), Gaps = 31/580 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI N++KI I+GDYDVDG  SV+L+    S    N N YIP R  +GYG
Sbjct: 55  DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLAFSELGANVNYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A L+I+VDCG  S + + +A    +D I+ DHH++      A A++N
Sbjct: 114 LNKEAIQILKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGGIPKALAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSFKYLAGVGTAFMLIYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V KGL   +     G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 VSDNRKFVKKGLETLKNTKWIGIKQLLRKIFPDNWDTKEYFAYDIGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L + +D  +   +  KL   N  R+ ++  +LE + A++  +   +   ++I+
Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNTERKDIQKKILEMSIAEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H G++G++A+++ +K+ +P+  +  +E  +G+ +       D+  +        
Sbjct: 346 VANKAFHHGVIGIVASKILDKYYKPTIIMEIKES-EGVATASCRSIGDLNIVECLNSVSD 404

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ILVK GGH+ AAG T++  N         ++        +     KI+ +L    VN   
Sbjct: 405 ILVKYGGHSGAAGFTIKIENIEEFYVRIDRYVEENFDKDLFIKKLKIEKILAPYKVNYEF 464

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           +  LE   PYGA N  PVFAF N + +++R       HL +  +         I F    
Sbjct: 465 LKELEILEPYGAKNHTPVFAFRNCQYENLRFTKNSTEHLMLDIKKDGYYFKNCIFFGGGD 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                + + S  K + +   L +  ++    C+L++ D  
Sbjct: 525 Y----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 560


>gi|256845682|ref|ZP_05551140.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_36A2]
 gi|256719241|gb|EEU32796.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_36A2]
          Length = 844

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 166/581 (28%), Positives = 287/581 (49%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D + A +RI +AI N++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DMEVATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A LII+VDCG  S + + +A    +D I+ DHH++  +   A A++N
Sbjct: 114 LNKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V +GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 VSDNRKFVKRGLKLLNNTKWIGIKQLLRKIFPDNWDTREYFAYDVGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I +D  +   +  KL   N  R+ ++  +LE + A++  +   +   ++I+
Sbjct: 288 DAKQAVSLFIEEDGFKCLSIIDKLLENNVKRKDIQKKILEMSIAEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         KF        +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKFIEENFDKDLFIKKLKIEKILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F   
Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 + + S  K + +   L +  ++    C+L++ D  
Sbjct: 524 DY----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 560


>gi|160901822|ref|YP_001567403.1| single-stranded-DNA-specific exonuclease RecJ [Petrotoga mobilis
           SJ95]
 gi|160359466|gb|ABX31080.1| single-stranded-DNA-specific exonuclease RecJ [Petrotoga mobilis
           SJ95]
          Length = 1035

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 164/580 (28%), Positives = 273/580 (47%), Gaps = 20/580 (3%)

Query: 18  WVSLLG--QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           W       Q+    A  ++    I D +A++LV+RN+ + +    FLN  + L   DP +
Sbjct: 9   WDPKASYYQQKDKVAKTLSSALGISDFLAKLLVSRNIETPEEGDKFLN-HLELESFDPYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA   + Q     EK+ IFGDYDVDG  + +++   L     +   YIP RI +G
Sbjct: 68  MKDMSKAVEILKQIKEKKEKVAIFGDYDVDGVTATSVLYLGLKKIGYDVTSYIPSRIEEG 127

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           Y  N   +E+  ++    IITVDCG+TS   ++YA + G+ VIV DHH  +     A A+
Sbjct: 128 YSLNVKAIEELKSKNYNNIITVDCGTTSIQEIEYAKSLGMKVIVTDHHLPQENLPKADAI 187

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP R DD      L   GV F +L  +Y+          + D    +DLVA+ T+ D+V
Sbjct: 188 LNPKREDDKYPFKDLAGVGVTFKLLQALYK------SYDNSLDPFEYIDLVAVGTIADIV 241

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313
            +   NR  V  GL   +     GLK L++ + I  S I +  + + + P INA GR+ +
Sbjct: 242 SITSENRYLVKIGLNKLKTNPTKGLKYLLDELKIVDSEINSRTITFKVAPKINAAGRMSD 301

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     LLI  D ++L+    +L  LN  R+  E  +       +L    + ++  V+V+
Sbjct: 302 ARSAFNLLIEKDEEKLKKAVSELLRLNSKRQSTEKEIYLY-SLSLLDLYPEYKKDPVLVL 360

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WH G++G++A++L  +F +P   IS  ++  G GSGRS +G D+ +++    E GI
Sbjct: 361 SGEDWHMGVLGIVASKLSNQFNKPVLMISKNQE-MGKGSGRSPQGIDLMELLLKVNERGI 419

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
             + GGH  AAG ++   N   L     +    +      T    +D  +    +   + 
Sbjct: 420 FEEFGGHKFAAGFSILSKNIEALRKEINEVYKELYGDKKLTSQIDVDMEI--EGIWETMF 477

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTP 552
           + +    P+G GN  PVF   N KL++IR         +   ++DS  +  + + + G  
Sbjct: 478 EDINKLEPFGYGNQEPVFLIKNAKLENIRFFRNGSQSFSGTLNKDSLIIDILGYDL-GYR 536

Query: 553 LGEFLMQSRGKRM-HVTGHLCV-NYWR-GSKRCQLRVLDA 589
           L E    S+      + G   + N +   +   +  + D 
Sbjct: 537 LSELTENSKKDLFTDLVGTFRIENSYNLKNSYVKFYLQDL 576


>gi|296327982|ref|ZP_06870517.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154938|gb|EFG95720.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 844

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/580 (27%), Positives = 281/580 (48%), Gaps = 31/580 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI N++KI I+GDYDVDG  SV+L+    S    N N YIP R  +GYG
Sbjct: 55  DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLAFSELGANVNYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A L+I+VDCG  S + + +A    +D I+ DHH++      A A++N
Sbjct: 114 LNKEAIQILKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGGIPKALAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSFKYLAGVGTAFMLIYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V KGL   +     G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 VSDNRKFVKKGLETLKNTKWIGIKQLLRKIFPDNWDTKEYFAYDIGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L + +D  +   +  KL   N  R+ ++  +LE + A++  +   +   ++I+
Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNTERKDIQKKILEMSIAEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H G++G++A+++ +K+ +P+  +  +E  +G+ +       D+  +        
Sbjct: 346 VANKAFHHGVIGIVASKILDKYYKPTIIMEIKES-EGVATASCRSIGDLNIVECLNSVSD 404

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ILVK GGH+ AAG T++  N         ++        +     KI+ +L    VN   
Sbjct: 405 ILVKYGGHSGAAGFTIKIENIEEFYVRIDRYVEENFDKDLFIKKLKIEKILAPYKVNYEF 464

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           +  LE   PYGA N  PVFAF N + +++R       HL +  +         I F    
Sbjct: 465 LKELEILEPYGAKNHTPVFAFRNCQYENLRFTKNSTEHLMLDIKKDGYYFKNCIFFGGGD 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                + + S  K + +   L +  ++    C+L++ D  
Sbjct: 525 Y----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 560


>gi|116491093|ref|YP_810637.1| single-stranded DNA-specific exonuclease [Oenococcus oeni PSU-1]
 gi|116091818|gb|ABJ56972.1| exonuclease RecJ [Oenococcus oeni PSU-1]
          Length = 622

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 163/580 (28%), Positives = 284/580 (48%), Gaps = 37/580 (6%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           + + W     Q        I Q  ++  + + VL  R  S+   +DF +  +  L+ DP 
Sbjct: 4   NQYFWFKR--QTDKQFIQKIEQHFSLDRLTSTVLAGRFSSVPLIEDFFSSDLNKLV-DPS 60

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            L   +   +R++ AI N EKI I+GDYD DG  S +++++ L       + +IP+R  D
Sbjct: 61  RLDQIELLKKRLISAIDNQEKITIYGDYDADGITSTSILLKTLQILGARVDYFIPNRFRD 120

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN  + ++ I+ G +LI  VD G + +DA+  A    +DV++ DHHQ+  +   A A
Sbjct: 121 GYGPNKFVYQQLIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAKA 180

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P+  DD     +L AAG+ F V   +    +     P          LVA+  + DV
Sbjct: 181 IIHPDLSDD-YPFKNLSAAGIAFKVSKYLLGTQKARQFFP----------LVAIGEIADV 229

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           +PLI  NR  +  G+ + +   N GL+ +I+R ++    +TA+++ + I P +N+ GR+ 
Sbjct: 230 MPLINENRILIQTGIDLIKSGENKGLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMA 289

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++ +G  LL +DDS ++  +A +++ LN+ R+     +   A  +V       Q+ ++I+
Sbjct: 290 DAGIGVELLTTDDSDKVSEIAKQVEHLNKQRQKEADKIYRIASRQV-----SPQENNIII 344

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V G+ WH GI+G++A RL   FGRP+   S  ++G   GS RS   FD+ K++  A    
Sbjct: 345 VSGENWHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKVLDRA--RD 401

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAGL+++  +  RL                +     ID V+ A  ++I  
Sbjct: 402 LYISFGGHKQAAGLSLKASDLDRLDKILNAD-----DYHFSVGRLAIDAVIKAEDLSIDS 456

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              L    P+G GNP P+F   + +L ++R++     H ++       + L    F    
Sbjct: 457 FKQLSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSGDIL---FFNRPD 513

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      G+R+ + G L +N W+  +  Q+   D  
Sbjct: 514 L----IGKLQLGERLSIVGTLSLNEWKHRQSLQIIGKDIR 549


>gi|58697289|ref|ZP_00372658.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536352|gb|EAL59823.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 481

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 200/485 (41%), Positives = 290/485 (59%), Gaps = 12/485 (2%)

Query: 10  ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69
           + SI+   W     +    + L +TQ+  +P+I+AR+LV R V+I+ A DFL P IR L+
Sbjct: 7   KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           PDP  L D DKA  RI++AI N E + IFGDYDVDGA S AL+ R+L    +++ +YIPD
Sbjct: 65  PDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ +GYG +   + +    G  L I+VDCG+ +Y  ++ A   G+D+IV+DHH    +  
Sbjct: 125 RVDEGYGLSTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247
            A A+VNPNRLD+ S   +L A GV FL++V + + LR+          DL  LLDLVAL
Sbjct: 185 SAVAIVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            TVCDV+ + GLNRA V +GL V   + N GL+ L + + I    +   LG+ IGP INA
Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIGE++LG+RLL +DD +E   +A+KL  LN  R+++E+  L +A A+          
Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
               ++    WH GI+G++A+RLKE+F  P+  IS   +G G  S RSI G DIG  V  
Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIGAAVLS 420

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A    ++++GGGH+MAAG +++      L DFF +   N +         K D ++ A A
Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476

Query: 488 VNIAL 492
           +N++L
Sbjct: 477 INLSL 481


>gi|163759418|ref|ZP_02166503.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea
           phototrophica DFL-43]
 gi|162283015|gb|EDQ33301.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea
           phototrophica DFL-43]
          Length = 449

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 241/420 (57%), Positives = 312/420 (74%), Gaps = 1/420 (0%)

Query: 2   NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            ++AFLGVE S+SG +WV+ L Q G N+A++I Q   +PDIVARVL  R V++  A  FL
Sbjct: 30  TERAFLGVEQSLSGQKWVARLDQAGENKAISIAQTTGLPDIVARVLAGRGVAMGDAVAFL 89

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P+I+ LMPDP  LTDCD+AA R+  AI   +++ IFGDYDVDGAAS ALM RF +H  +
Sbjct: 90  DPTIKALMPDPSRLTDCDRAAERLALAIARRQRVAIFGDYDVDGAASSALMQRFFNHFGL 149

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
            + +YIPDRI +GYGPN   + + I  GA LI+TVDCGSTS++AL  A  +G+DV+VIDH
Sbjct: 150 ESEIYIPDRIFEGYGPNAPAIAELIERGAGLIVTVDCGSTSHEALGEAAQRGVDVVVIDH 209

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLS 240
           HQ+ +E  PA+ALVNPNR DDLSG GHLCA GVVF+VL    R+LRQ        FDLLS
Sbjct: 210 HQMAAELPPAHALVNPNREDDLSGLGHLCACGVVFMVLAGTLRLLRQQGDARVSGFDLLS 269

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
            LDLVALATVCDVVPL GLNRA+VVKGL+ AR  GNPGL AL +R  ++ PI+  +LG++
Sbjct: 270 CLDLVALATVCDVVPLKGLNRAFVVKGLLAARGLGNPGLAALCQRAGVNGPISPYHLGFL 329

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           IGP INAGGRIG++ LGSRLL  DD  E + +A +L+ LN+ R+ +E+AMLE+A+A+  T
Sbjct: 330 IGPRINAGGRIGDAALGSRLLALDDPAEAQAIAERLEELNRERQAIEAAMLEEADAEAAT 389

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           +    +  +VIV     WHPG+VGLLA+RLKE++ RP+FAI+F+ +GKG GSGRS+ G D
Sbjct: 390 EMQSGEGPAVIVTARQGWHPGVVGLLASRLKERYRRPAFAIAFDGNGKGTGSGRSVPGLD 449


>gi|152991601|ref|YP_001357322.1| single-strand DNA-specific exonuclease [Sulfurovum sp. NBC37-1]
 gi|151423462|dbj|BAF70965.1| single-strand DNA-specific exonuclease [Sulfurovum sp. NBC37-1]
          Length = 527

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 151/535 (28%), Positives = 255/535 (47%), Gaps = 31/535 (5%)

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
           + FL  S++ L P P    D D+A  RIV+AI N EKI I GDYDVDG  S  LM  F  
Sbjct: 20  EGFL--SLKDL-PHPSTFKDMDRATERIVRAIENREKISIIGDYDVDGVTSTTLMKLFFD 76

Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177
                    IP+R  DGYG + +++ +       L ITVD G ++  A Q    +GI++I
Sbjct: 77  EIDYPVEWVIPNRFRDGYGLSANIIPRIAG--TDLAITVDNGISAVYAAQLCKEEGIELI 134

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237
           + DHH +  E   AYA+++  +         +C A + + ++  +   L       L  +
Sbjct: 135 ITDHHMLAPEVPEAYAIIDQKQEACSFPYEEVCGAQIAWYLIASLKNAL------ALKIN 188

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297
           ++  ++L A+A + DV+PL  +NRA V +G+    +   P +KA +E       +++E++
Sbjct: 189 MMPYMELAAIAIIADVMPLWHINRAMVERGIKALSQSSRPAIKAFMEHT-QKEELSSEDI 247

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
            +   P +NA GR+ +++     L S +  +  +   +L   N  R+  E  +  +A  K
Sbjct: 248 AFSFAPILNAAGRMEDASHAVDFLTSTNIYDARVRLERLIGFNTERKATEEDITRKALQK 307

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
              + +      VI+V G+ WH G+VG++AAR+     +P   +S  E+G   GSGRS  
Sbjct: 308 ADWEDE------VIIVAGEGWHEGVVGIVAARVARVREKPCIILSRNEEGILKGSGRSYG 361

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
             D+  +V    E   L K GGH  A GL++   +F    +  Q+  H            
Sbjct: 362 ECDLFGIVDGCRE--DLEKFGGHKAAIGLSLHETHFESFREKVQESYHQGNYVKEEIDPE 419

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFES 535
            + G L+ S ++ AL +M++   PYG GNP P F   + ++     +     HL+ +F +
Sbjct: 420 IV-GELHFSEISFALTEMMQKYEPYGHGNPRPKFISSDVEILQADTMGKEGEHLRFSF-A 477

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           Q+   +  + F+              G+R+ +T  +  N++RG+   QL +    
Sbjct: 478 QEGIVMPGVKFKTKEHF-------ETGERVSITYTVNENHFRGNVTLQLMIDKIK 525


>gi|71276053|ref|ZP_00652334.1| RecJ exonuclease [Xylella fastidiosa Dixon]
 gi|71899475|ref|ZP_00681633.1| RecJ exonuclease [Xylella fastidiosa Ann-1]
 gi|71163136|gb|EAO12857.1| RecJ exonuclease [Xylella fastidiosa Dixon]
 gi|71730788|gb|EAO32861.1| RecJ exonuclease [Xylella fastidiosa Ann-1]
          Length = 613

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 175/582 (30%), Positives = 272/582 (46%), Gaps = 39/582 (6%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ RV   R  +         P +  L+  P +L++   A   + + I  + +I++
Sbjct: 29  NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 84

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TV
Sbjct: 85  VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 144

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH       PA  +VNPN   DL     L   GV+F
Sbjct: 145 DHGIACHAGIAAAKARGWKVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIF 204

Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
            VL+ +   L                         DL SLLDLVA+ TV D+VPL   NR
Sbjct: 205 YVLLALRARLYPAARAACEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 264

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
           A V  GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  
Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376
           LL+++D      +A  L+ +N  RR+++  M + AE    + + Q   +   +V  +   
Sbjct: 325 LLLTEDWTRARAIAAMLEEINVVRRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 383

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432
            WHPG++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  ++        G
Sbjct: 384 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 443

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGLT++          F+     +V   +       DG L A  ++   
Sbjct: 444 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 503

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551
              L   GP+G G P P+F     ++   RV+   HL+M        + L AI F  +  
Sbjct: 504 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 562

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      +R+ +   L  + +RG    QL V  A  +E
Sbjct: 563 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 597


>gi|149927856|ref|ZP_01916107.1| Single-stranded-DNA-specific exonuclease RecJ [Limnobacter sp.
           MED105]
 gi|149823478|gb|EDM82709.1| Single-stranded-DNA-specific exonuclease RecJ [Limnobacter sp.
           MED105]
          Length = 555

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 166/569 (29%), Positives = 270/569 (47%), Gaps = 35/569 (6%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++AR++  R V            +  L+P P  L   ++AA  +  A+    +I++ G
Sbjct: 2   HPLMARLMAARGVDSQAEA---ETRLADLIP-PAQLKGIEQAAEILADALEAGARIVVVG 57

Query: 100 DYDVDGAASVALMMRFLSH----CSVN-------ANMYIPDRIVDGYGPNPSLMEKFINE 148
           DYD DGA + A+ +R L         +        +  +P+R   GYG +P +++    +
Sbjct: 58  DYDCDGATATAVGVRGLRMLLQSLGADEEAAKYHIDFLVPNRFEYGYGLSPEIVQLAAQQ 117

Query: 149 G-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
               L++TVD G  S + +  A   GI VIV DHH    +   A A+VNPN+        
Sbjct: 118 FEPDLLVTVDNGIASVEGVNEANELGIGVIVTDHHLPGDQLPQALAVVNPNQPGCEFPSK 177

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
            +   GV+F VL+    +LR+           + SLLDLVAL TV DVV L   NR  V 
Sbjct: 178 SIAGVGVMFYVLLATRAVLRERGVFDAATQPRIDSLLDLVALGTVADVVKLDANNRRLVA 237

Query: 266 KGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL   R  +  PG+ AL           TA ++G+ +GP +NA GR+ +  +G R L++
Sbjct: 238 HGLQRIRAGRAQPGMLALFHEAGRDPRKATAADMGFALGPRLNAAGRLADMAIGIRTLLA 297

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           DD+ E   LA +L  +N+ R+ +E+ M   A   +       + A+ IVV    WH G++
Sbjct: 298 DDAGEAGALAAQLGKMNEERKRIEADMKRDALEDIEKFISQDEPAAGIVVAHSTWHQGVI 357

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV---EEGILVKGGGH 440
           G+LA+R+KE+  RP+ A++  +DG   GSGRS++G  +  ++        EG + K GGH
Sbjct: 358 GILASRIKERLYRPTIALAPGDDGFWKGSGRSVQGVHLRDVLDLVCKRLPEGSMPKFGGH 417

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           AMAAGLT+      +    F K   ++      T V + DG + A  +  +  D+LE+  
Sbjct: 418 AMAAGLTIAEGAIEQFKIEFAKAILDLSDPSALTQVVETDGSIPADYIAASAADLLET-Q 476

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560
            +G G P P+F     ++   R++  AH + T   +D +T  A+ +R            +
Sbjct: 477 VWGQGFPAPLFCDE-FEVVEHRLLKNAHSKFTLR-RDGKTFVALRWRAVE---------A 525

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              ++ +      + + G    Q+ V   
Sbjct: 526 LPAKVKLAYRFERDTFTGGDAVQIIVEHV 554


>gi|71897685|ref|ZP_00679930.1| RecJ exonuclease [Xylella fastidiosa Ann-1]
 gi|71732588|gb|EAO34641.1| RecJ exonuclease [Xylella fastidiosa Ann-1]
          Length = 613

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 176/582 (30%), Positives = 272/582 (46%), Gaps = 39/582 (6%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ RV   R  +         P +  L+  P +L++   A   + + I    +I++
Sbjct: 29  NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKAKGRILV 84

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TV
Sbjct: 85  VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 144

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH       PA  +VNPN   DL     L   GV+F
Sbjct: 145 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPPADVIVNPNLPGDLFPSKTLAGVGVIF 204

Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
            VL+ +   L                         DL SLLDLVA+ TV D+VPL   NR
Sbjct: 205 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 264

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
           A V  GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  
Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376
           LL+++D      +A  L+ +N  RR+++  M + AE    + + Q D +   +V  +   
Sbjct: 325 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSDGVLPMAVC-LFDP 383

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432
            WHPG++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  ++        G
Sbjct: 384 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 443

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGLT++          F+     +V   +       DG L A  ++   
Sbjct: 444 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 503

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551
              L   GP+G G P P+F     ++   RV+   HL+M        + L AI F  +  
Sbjct: 504 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 562

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      +R+ +   L  + +RG    QL V  A  +E
Sbjct: 563 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 597


>gi|188996979|ref|YP_001931230.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932046|gb|ACD66676.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 574

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 167/598 (27%), Positives = 289/598 (48%), Gaps = 37/598 (6%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66
           +E  ISG++W+ L           + +K+   +I A+VL NR      D+++D++ P ++
Sbjct: 1   MEIGISGYQWIDLSKTNPAPDF--LVKKYG--EIFAQVLYNRRDLFDKDFSQDYIFPELK 56

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+ +P      ++AA ++ + I     I+++GDYD DG  S +L++ F     VNA  Y
Sbjct: 57  NLV-NPSYFHSLEEAAIKLAEHIKRKTPIVVYGDYDADGITSTSLLINFFKDLGVNAKYY 115

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP R  +GYG N   ++K    G  L I  D G+ ++D L YA + G++V V+DHH+   
Sbjct: 116 IPSRFSEGYGLNKEAIKKLSEHGKVL-IVCDSGTNAFDELFYAKSLGLEVFVLDHHEPSY 174

Query: 187 EEIPA--------YALVNPNRLDD---LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
                          ++NP    D        HL   G+ F ++ +  R+L  D      
Sbjct: 175 LWQNYTPPFLSEKINIINPKFYSDEQINPLFKHLATVGIAFYLIAITRRLLNID------ 228

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
             L   LD+VA+ TV DVVP+  +NR  V  GL    +Q   G+K L+    +   +T++
Sbjct: 229 IKLRDYLDIVAIGTVADVVPMSFINRVMVKIGLEELNKQKRAGIKELLNVARVKKELTSQ 288

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           ++G++IGP INA GR+ ++    +LL++ D     +LA++L+ LN+ R+ +   ++ +AE
Sbjct: 289 DIGFIIGPRINASGRLADARNSVKLLVTRDQSRANVLAIELENLNKKRQKLTDNVISEAE 348

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
            ++L Q       +VIV+  + WH G+VG+ A RL EK+  PS  +S   +GK +GS RS
Sbjct: 349 KELLKQ----DLKNVIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VNNGKAVGSARS 403

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           +   +I K +       +  K GGH+MAAG++++      L +   +     V       
Sbjct: 404 VSKVNIYKALDKC--RDLFDKFGGHSMAAGMSLKTNLIPELKERLNQAVEE-VAEEKPWA 460

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535
           V +ID  +  S      +  + +  P+G  NP P F   N K++         L +  + 
Sbjct: 461 VKEIDMEVELSYWTTEKVKEIYNLQPFGEKNPIPKFLARNLKIEFFTNPAKNLLILNLKD 520

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           ++     A +++            S G  + +     +NY++G +     V D   V+
Sbjct: 521 ENKNIYNAKSWKAKEL----LDKLSVGMIIDIVYTPEINYYKGFENLDFVVDDLKIVK 574


>gi|317490320|ref|ZP_07948806.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp.
           1_3_56FAA]
 gi|325833463|ref|ZP_08165912.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp.
           HGA1]
 gi|316910610|gb|EFV32233.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp.
           1_3_56FAA]
 gi|325485387|gb|EGC87856.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp.
           HGA1]
          Length = 1122

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 138/578 (23%), Positives = 243/578 (42%), Gaps = 23/578 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTD 77
              +        + + ++  +P  +A  LV R +    A   FL PS+     DP I+  
Sbjct: 4   QFKIKAADPASVVRLERELGLPRFIAATLVARGIDNPAAVHRFLAPSLERDWLDPYIIPG 63

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
               A  +  A+   + I++FGD+D+DG ++  ++ R L      A  +IP R  +GY  
Sbjct: 64  LSDVADALEAAVKRGDHILVFGDFDLDGISATTVLTRGLRALGAQATPFIPLRFEEGYAL 123

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           + + + +  + G   I+TVDCG             G+ + + DHH+          + +P
Sbjct: 124 SQAAITRACSFGPDFIVTVDCGIACKAEAAAVVEAGLGLAITDHHEPVDLVPEGVPVADP 183

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
              D       L   GV   ++ ++   L Q              D   L TV D++P+ 
Sbjct: 184 KC-DANCPSSILAGVGVALKLVQVLGGRLGQ------PHLWRDFTDFATLGTVADLMPMR 236

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316
             NRA V  G+        P + AL+        P++A NL + + P +NA GR+G++ L
Sbjct: 237 DENRALVSDGIARMNAAPRPCIAALLATSGAADKPVSATNLSFSVIPRLNAAGRMGDAQL 296

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL++DD +E   LA KL+ +N  RR +E+ + E A+A+             +VV G+
Sbjct: 297 ALDLLMTDDFEEANRLATKLESVNDQRRAIEAELSEIAKAQAAEIYHGQ---RALVVSGE 353

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G+ G++A+RL   +G PS   +  +  +  GSGRS+    +   V  A    +L +
Sbjct: 354 SWHEGVKGIVASRLVNTYGVPSLLFT-IDGDEARGSGRSVGQVSLFSAVESA--SDLLTR 410

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A G+T+              +    +P     P+ +ID  ++   + +  +  L
Sbjct: 411 FGGHDAAVGVTLPADKLPEFERRLCAYMDA-LPEGAFHPLVEIDSCVSLDELTLDNVAQL 469

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +   P+G  +P PV+   +  L + R V     H   +       T+  I F        
Sbjct: 470 DKLAPFGQEHPVPVYLARDVMLANCRAVGAEKNHFSCSLSD-GRATVSGIMFHCSDIE-- 526

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              +      ++    + ++ WRG K  +  +   +P 
Sbjct: 527 --SLMRTDSVVNAAFEVQIDEWRGRKSVKAMLQSLAPA 562


>gi|257792452|ref|YP_003183058.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella lenta
           DSM 2243]
 gi|257476349|gb|ACV56669.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella lenta
           DSM 2243]
          Length = 1122

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 138/578 (23%), Positives = 243/578 (42%), Gaps = 23/578 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTD 77
              +        + + ++  +P  +A  LV R +    A   FL PS+     DP I+  
Sbjct: 4   QFKIKAADPASVVRLERELGLPRFIAATLVARGIDNPAAVHRFLAPSLERDWLDPYIIPG 63

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
               A  +  A+   + I++FGD+D+DG ++  ++ R L      A  +IP R  +GY  
Sbjct: 64  LSDVADALEAAVKRGDHILVFGDFDLDGISATTVLTRGLRALGAQATPFIPLRFEEGYAL 123

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           + + + +  + G   I+TVDCG             G+ + + DHH+          + +P
Sbjct: 124 SQAAITRACSFGPDFIVTVDCGIACKAEAAAVVEAGLGLAITDHHEPVDLVPEGVPVADP 183

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
              D       L   GV   ++ ++   L Q              D   L TV D++P+ 
Sbjct: 184 KC-DANCPSSILAGVGVALKLVQVLGGRLGQ------PHLWRDFTDFATLGTVADLMPMR 236

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316
             NRA V  G+        P + AL+        P++A NL + + P +NA GR+G++ L
Sbjct: 237 DENRALVSDGIARMNAAPRPCIAALLATSGAADKPVSATNLSFSVIPRLNAAGRMGDAQL 296

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL++DD +E   LA KL+ +N  RR +E+ + E A+A+             +VV G+
Sbjct: 297 ALDLLMTDDFEEANRLATKLESVNDQRRAIEAELSEIAKAQAAEIYHGQ---RALVVSGE 353

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH G+ G++A+RL   +G PS   +  +  +  GSGRS+    +   V  A    +L +
Sbjct: 354 SWHEGVKGIVASRLVNTYGVPSLLFT-IDGDEARGSGRSVGQVSLFSAVESA--SDLLTR 410

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  A G+T+              +    +P     P+ +ID  ++   + +  +  L
Sbjct: 411 FGGHDAAVGVTLPADKLPEFERRLCAYMDA-LPEGAFHPLVEIDSCVSLDELTLDNVAQL 469

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
           +   P+G  +P PV+   +  L + R V     H   +       T+  I F        
Sbjct: 470 DKLAPFGQEHPVPVYLARDVMLANCRAVGAEKNHFSCSLSD-GRATVSGIMFHCSDIE-- 526

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
              +      ++    + ++ WRG K  +  +   +P 
Sbjct: 527 --SLMRTDSVVNAAFEVQIDEWRGRKSVKAMLQSLAPA 562


>gi|160893484|ref|ZP_02074269.1| hypothetical protein CLOL250_01035 [Clostridium sp. L2-50]
 gi|156864879|gb|EDO58310.1| hypothetical protein CLOL250_01035 [Clostridium sp. L2-50]
          Length = 625

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 165/624 (26%), Positives = 290/624 (46%), Gaps = 60/624 (9%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILT 76
           W     +        I ++  I  +  RV+ NR+ ++ +    +LN S+  L  DP ++ 
Sbjct: 15  WTVYGKRADF---FGIGERFHIDPVTVRVIRNRDVITDEDIDTYLNGSLDRLH-DPGLMK 70

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH---------CSVNANMYI 127
           + +K    +++ I N ++I I  DYDVDG +S  ++ + L                +  I
Sbjct: 71  NMEKGCNLMLEEIRNKKRIRIISDYDVDGVSSNYILYKGLQRVWEHENGISAGDKIDYDI 130

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P RI DGYG N  +++    +    IIT D G  ++DA++ A   G+ VIV DHH +  +
Sbjct: 131 PHRIYDGYGINIRMVDAAAADQISTIITCDNGIAAFDAVRKAKEYGMRVIVTDHHDIPYD 190

Query: 188 EIPA----------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237
                          A+++  +         LC AGV +  + L+YR+           +
Sbjct: 191 TDEKNIRIYKVPEADAVIDHKQPGCEYPCKELCGAGVAYKFIQLLYRMCGI-----PETE 245

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAEN 296
             + ++++ +ATVCDV+ L+  NR  V + L       N GLKALI         ++A +
Sbjct: 246 CEAFIEILGIATVCDVMNLVDENRIIVREALRRLSDSSNYGLKALITNSGRDGKKLSAFD 305

Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356
           LG++IGP INA GR+G++      L+  DS +    A++L  +N  R+ M     + A  
Sbjct: 306 LGFIIGPCINAAGRLGDAKTSLEFLLETDSYKANERAIELLNINNARKDMTEQGTKTAIE 365

Query: 357 KVLTQCDDIQQ-----------ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-E 404
            +      +               V+V+   + H  +VG++A R+KE++ RP    +  E
Sbjct: 366 LLEKSDRLLMGAVPETGVAALSDKVLVMYIPKLHESLVGIIAGRIKERYYRPVLLFTDGE 425

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
           E+G   GSGRSIEG+++   ++         K GGH MAAG ++E+ N  RL +      
Sbjct: 426 EEGIIKGSGRSIEGYNMYDEINKC--SDYFTKFGGHEMAAGFSMEKRNLARLREKMNTNC 483

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
              +   + TP  +ID  +    V+I+L + LE   P+G GN  PVFA     ++S R++
Sbjct: 484 --TLDEKLLTPKLRIDVPMPLDYVSISLTEELELLEPFGKGNEKPVFAQSGVYVKSARIM 541

Query: 525 NLAH--LQMTFESQDSETLQAIAF----------RVYGTPLGEFLMQSRGKRM--HVTGH 570
                 L++TF  ++  T++ I+F          + +G    + +++     +   +  +
Sbjct: 542 GKRQNVLRVTFLMENGGTIEGISFAPEVFISNIKQWFGANECDKILKGMPGHVVLDIAYY 601

Query: 571 LCVNYWRGSKRCQLRVLDASPVEG 594
             +N + G +  Q+R+L+    EG
Sbjct: 602 PDINEFAGRRTLQIRLLEYRKHEG 625


>gi|170729663|ref|YP_001775096.1| single-stranded DNA exonuclease [Xylella fastidiosa M12]
 gi|167964456|gb|ACA11466.1| single-stranded DNA exonuclease [Xylella fastidiosa M12]
          Length = 602

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 175/582 (30%), Positives = 272/582 (46%), Gaps = 39/582 (6%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ RV   R  +         P +  L+  P +L++   A   + + I  + +I++
Sbjct: 18  NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TV
Sbjct: 74  VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH       PA  +VNPN   DL     L   GV+F
Sbjct: 134 DHGIACHAGIAAAKARGWKVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIF 193

Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
            VL+ +   L                         DL SLLDLVA+ TV D+VPL   NR
Sbjct: 194 YVLLALRARLYPAARAACEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 253

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
           A V  GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  
Sbjct: 254 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 313

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376
           LL+++D      +A  L+ +N  RR+++  M + AE    + + Q   +   +V  +   
Sbjct: 314 LLLTEDWTRARAIAAMLEEINVVRRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 372

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432
            WHPG++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  ++        G
Sbjct: 373 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 432

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGLT++          F+     +V   +       DG L A  ++   
Sbjct: 433 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 492

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGT 551
              L   GP+G G P P+F     ++   RV+   HL+M        + L AI F  +  
Sbjct: 493 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRYDALNAIYFNGWQG 551

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      +R+ +   L  + +RG    QL V  A  +E
Sbjct: 552 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 586


>gi|255994784|ref|ZP_05427919.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium saphenum
           ATCC 49989]
 gi|255993497|gb|EEU03586.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium saphenum
           ATCC 49989]
          Length = 542

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 160/555 (28%), Positives = 267/555 (48%), Gaps = 22/555 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             + +R+L  R   I   ++F +P+ +L  P    L   D+A  RI +A  N+EKI I+G
Sbjct: 4   SKVFSRILSLRKDIIGDPEEFFSPTPQLTHPA-DELYSIDEAVSRIAKACENNEKITIYG 62

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYD DG  S  +M  FL     +   YIP R+ +GYG +   + K    G  LII+VDCG
Sbjct: 63  DYDADGVTSTGIMFMFLKAAGADVEYYIPSRMDEGYGISIEAINKIKETGTTLIISVDCG 122

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
           S SY+  +YA + G+DV++ DHH V          VNP           +   GV F VL
Sbjct: 123 SNSYEEAEYAESIGMDVVITDHHTVDKHHYEGIN-VNPKHPKSSCAFPQIAGVGVAFKVL 181

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             + R L  D +V     LL  LDLVA+ T+ D++P+   NR Y+  GL+   +  N GL
Sbjct: 182 QQLQRKLNLDKRV-----LLETLDLVAIGTIADIMPVYDENRTYIKYGLLKMNKNPNLGL 236

Query: 280 KALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           + L+  + I    I ++++ + I P INA GR+  +++G  L I+DD +    LA  L  
Sbjct: 237 RCLLRELGIADREIKSDDVSFRIAPCINAAGRLENASIGVELFITDDEKRAMTLARDLVN 296

Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
           LN  R+ ++ A +++++ K++    D       ++     H G+ G+++ +LKE FG+ +
Sbjct: 297 LNTKRKELQVAEVKRSKEKMVETGADKN----AILLTLDIHSGVAGIVSGKLKEDFGKVA 352

Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
             +    DG    SGRS +  D+ ++      + + V  GGH+ A G T+++ +     +
Sbjct: 353 IVMVDTGDGYLKASGRSPDAIDLYQL--LLKFQDLYVNFGGHSAACGFTIKKSDENVFRE 410

Query: 459 FFQKFAHNIVPAL--ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
            F +   ++V A        +K D  ++ S +N+ L   L+   PYG  N +  F   + 
Sbjct: 411 RFYRAVDDMVEADPGSLKKNYKYDLKVDVSDMNLELASELKMLEPYGKLNEDIRFLIEDV 470

Query: 517 KLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
              ++  +     H++   +   + TL+ + F      +     Q   K + + G    N
Sbjct: 471 VPFNMIYLGRDSRHIKFFLKQARN-TLECMCFNAAAEVINMIEEQ---KHISIIGKFGAN 526

Query: 575 YWRGSKRCQLRVLDA 589
            +RG    Q+ V D 
Sbjct: 527 EYRGKLSPQITVSDI 541


>gi|282600883|ref|ZP_05980017.2| single-stranded-DNA-specific exonuclease RecJ [Subdoligranulum
           variabile DSM 15176]
 gi|282571257|gb|EFB76792.1| single-stranded-DNA-specific exonuclease RecJ [Subdoligranulum
           variabile DSM 15176]
          Length = 684

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 162/581 (27%), Positives = 262/581 (45%), Gaps = 31/581 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W     + G    LA         ++ RVL  R +   + A+  L P+    + DP +L 
Sbjct: 14  WQIRTAEPGAEDTLAAA---GCGVLLRRVLAARGIRDTETARQMLEPAAD--LSDPFLLR 68

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA  RI QAI   E I+I+GDYDVDG ++ AL+   LS    +    +P R   GYG
Sbjct: 69  DMDKAVARIGQAIEAEEPIVIYGDYDVDGISATALLYECLSSQGAHVRCKLPTRGS-GYG 127

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                +E    +G  L++TVD G ++ +    A   G+D+++ DHH        A A+V+
Sbjct: 128 LTRPALEALAQKGFTLVVTVDNGISAVEEAACAKELGLDLVITDHHLPGDVLPEAVAVVD 187

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R DD S   +LC AGV F +   +               L    + VAL TV DV+PL
Sbjct: 188 PKRADDESPFKNLCGAGVAFKLCAAL-------EGCNPAELLEMYGEFVALGTVADVMPL 240

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGESN 315
           +G NR  V +GL + +    PGL AL+E    +      + + Y + P +NA GR+  ++
Sbjct: 241 VGENRVLVREGLALLQDTMRPGLHALLESGGYAGKPVTTDTVSYGLAPRLNAAGRMDNAS 300

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
           +  +LL+  D ++   +A +L  +N  R+  E A+   A   +      ++   V+VV G
Sbjct: 301 VALKLLLCGDEEQATGIAARLAEINTERQQTEQAVFASACGVLEADPARLRDR-VLVVAG 359

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
           + WHPG++G++AARL E++ RP   IS  + G+G GSGR+ + FD+   ++   E   L 
Sbjct: 360 EDWHPGVIGIVAARLMERYSRPVIVISLHD-GEGRGSGRAPDSFDLHSALAACAE--NLT 416

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           + GGHA AAG+ +E            ++A           + ++D V+    + +  +  
Sbjct: 417 RFGGHAAAAGIEIEEEKLPVFRQAINEWAARHAARPAPA-MLQLDAVVKLEELTLENVRD 475

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  NP PV    +  +  +  +     H ++     +     A  F V     
Sbjct: 476 LTRLAPFGRENPTPVLLVRDAVIDGVWAMGAEGRHTRVRLRQGNHTMF-ASLFGVT---- 530

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSK--RCQLRVLDASPV 592
            +      G  +     L V+ + G         +    P 
Sbjct: 531 PQKFAYPVGTAVEAA--LEVSIFTGRSGPMVSAHLKGIRPA 569


>gi|167630584|ref|YP_001681083.1| single-stranded-DNA-specific exonuclease recj [Heliobacterium
           modesticaldum Ice1]
 gi|167593324|gb|ABZ85072.1| single-stranded-DNA-specific exonuclease recj [Heliobacterium
           modesticaldum Ice1]
          Length = 577

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 171/579 (29%), Positives = 274/579 (47%), Gaps = 35/579 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW+    Q+       I+    +    A +L  R +    A+ F+   I   M DP ++ 
Sbjct: 2   RWIFPSTQQ-------ISSYPGLTPFQAALLARRGIGPAEAERFIRSGIED-MYDPRLMK 53

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
               AA  I   I     I ++GDYD DG    AL++  L+    + + YI  R V+G+G
Sbjct: 54  GATAAAAIISDTIDRQVPITVYGDYDCDGVTGTALLVESLTKLGASVDWYINSRFVEGFG 113

Query: 137 PNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
            +P  +E+       +LII+VD G ++ DA++ A   G+ V++ DHH+   E  PA  +V
Sbjct: 114 MHPLGIEEIARRGTPRLIISVDNGISAGDAVRRARELGMQVVITDHHEPSEELPPADVIV 173

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP +      + HL   GV F V+ ++++   +        ++L  LDLVA+ TV DV+P
Sbjct: 174 NPKQAGCAYPEKHLAGVGVAFKVMQILFQAAGR------PREILRSLDLVAIGTVADVMP 227

Query: 256 LIGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRI- 311
           + G NR ++  GL +     +   GL+A+ +  N+   + A  +LG++ GP +NA GRI 
Sbjct: 228 VTGENRIFIKNGLKLINWGNRTRIGLQAIKDAANLKGDVNAHYHLGFIFGPMLNATGRID 287

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G       LL++ D      LA +L  +N+ R+ +     E A  +  T+         I
Sbjct: 288 GVPAAAVELLLTADRHRAAGLAAQLRKVNEERQELTRRQTEVALTQAQTKMQGTGAPGFI 347

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV    +H GIVGL+A+RLKE + RP  A++   E G   GS RS++GF + + +     
Sbjct: 348 VVYNPAFHEGIVGLIASRLKEVYHRPVLALTDSHEPGVLKGSVRSVKGFSVKEHLI-DGC 406

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             +L+KGGGH MAAG ++ + N   LC       H   PA +  P   ID VL    ++ 
Sbjct: 407 ADLLLKGGGHEMAAGCSLIKENLAALCCRLDAAVHQA-PADLFVPSVGIDYVLEPKEMDR 465

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548
            L+  +E   PYGAG P P F       + +R V     HL+++      + + AI F  
Sbjct: 466 GLVTQIEEFAPYGAGFPRPNFLLAPFWPEQVRFVGRDGNHLRLS-----GQGVIAIGFNQ 520

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                  F   +    + + G   +N +   +  Q R+ 
Sbjct: 521 AEA----FRKANPQGTLALLGLPEINDY--DRSVQFRLR 553


>gi|254993583|ref|ZP_05275773.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL J2-064]
          Length = 492

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/509 (30%), Positives = 255/509 (50%), Gaps = 23/509 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI +AI  +E+I+++GDYD DG  S+A++M+ L H   NA  YIP+R  
Sbjct: 61  FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P           L   GV + +   +   L ++           LLDLVA+ TV D
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVTYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           +V L   NR  V  GL   R   N GL  L ++ ++     T E +G+ + P +NA GR+
Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G ++  + LL+++D +E   LA ++D  N+ R+ +     + A   +  +       +V+
Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV G+ W+ GI+G++A++L   + RP+  +  +   G   GSGRS++ F + +       
Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LXKH 404

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++
Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
           A I  LE   P+G  NP P+F   N  L+
Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLK 492


>gi|290890596|ref|ZP_06553667.1| hypothetical protein AWRIB429_1057 [Oenococcus oeni AWRIB429]
 gi|290479724|gb|EFD88377.1| hypothetical protein AWRIB429_1057 [Oenococcus oeni AWRIB429]
          Length = 622

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 163/580 (28%), Positives = 282/580 (48%), Gaps = 37/580 (6%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           + + W     Q        I Q  ++  + + VL  R  S+   +DF +  +  L+ DP 
Sbjct: 4   NQYFWFKR--QTDKQFIQKIEQHFSLDRLTSTVLAGRFSSVPLIEDFFSSDLNKLV-DPS 60

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            L   +   +R++ AI N EKI I+GDYD DG  S +++++ L       + +IP+R  D
Sbjct: 61  RLDQIELLKKRLISAIDNQEKITIYGDYDADGITSTSILLKTLQILGARVDYFIPNRFRD 120

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYGPN  + ++ I+ G +LI  VD G + +DA+  A    +DV++ DHHQ+  +   A A
Sbjct: 121 GYGPNKFVYQQLIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAKA 180

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P+  DD     +L AAG+ F V   +                   L LVA+  + DV
Sbjct: 181 IIHPDLSDD-YPFKNLSAAGIAFKVSKYLL----------GTQKARQFLPLVAIGEIADV 229

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312
           +PLI  NR  +  G+ + +   N GL+ +I+R ++    +TA+++ + I P +N+ GR+ 
Sbjct: 230 MPLINENRILIQTGIDLIKSGENKGLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMA 289

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +S +G  LL +DDS ++  +  +++ LN+ R+     +   A  +V       Q+ ++I+
Sbjct: 290 DSGIGVELLTTDDSDKVSEITKQVEHLNKQRQKEADKIYRIASRQV-----SPQENNIII 344

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V G+ WH GI+G++A RL   FGRP+   S  ++G   GS RS   FD+ K++  A    
Sbjct: 345 VSGENWHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKVLDRA--RD 401

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGH  AAGL+++  +  RL                +     ID V+ A  ++I  
Sbjct: 402 LYISFGGHKQAAGLSLKASDLDRLDKILNAD-----DYHFSVGRLAIDAVIKAGDLSIDS 456

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
              L    P+G GNP P+F   + +L ++R++     H ++       + L    F    
Sbjct: 457 FKQLSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSGDIL---FFNRPD 513

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                      G+R+ + G L +N W+  +  Q+   D  
Sbjct: 514 L----IGKLQLGERLSIVGTLSLNEWKHRQSLQIIGKDIR 549


>gi|307579426|gb|ADN63395.1| single-stranded-DNA-specific exonuclease RecJ [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 604

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 174/582 (29%), Positives = 271/582 (46%), Gaps = 39/582 (6%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ RV   R  +         P +  L+  P +L++   A   + + I  + +I++
Sbjct: 20  NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TV
Sbjct: 76  VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 135

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH        A  +VNPN   DL     L   GV+F
Sbjct: 136 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIF 195

Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
            VL+ +   L                         DL SLLDLVA+ TV D+VPL   NR
Sbjct: 196 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 255

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
           A V  GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  
Sbjct: 256 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 315

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376
           LL+++D      +A  L+ +N  RR+++  M + AE    + + Q   +   +V  +   
Sbjct: 316 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 374

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432
            WHPG++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  ++        G
Sbjct: 375 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 434

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGLT++          F+     +V   +       DG L A  ++   
Sbjct: 435 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 494

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551
              L   GP+G G P P+F     ++   RV+   HL+M        + L AI F  +  
Sbjct: 495 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 553

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      +R+ +   L  + +RG    QL V  A  +E
Sbjct: 554 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 588


>gi|182680958|ref|YP_001829118.1| single-stranded-DNA-specific exonuclease RecJ [Xylella fastidiosa
           M23]
 gi|182631068|gb|ACB91844.1| single-stranded-DNA-specific exonuclease RecJ [Xylella fastidiosa
           M23]
          Length = 602

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 174/582 (29%), Positives = 271/582 (46%), Gaps = 39/582 (6%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ RV   R  +         P +  L+  P +L++   A   + + I  + +I++
Sbjct: 18  NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 73

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TV
Sbjct: 74  VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 133

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH        A  +VNPN   DL     L   GV+F
Sbjct: 134 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIF 193

Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
            VL+ +   L                         DL SLLDLVA+ TV D+VPL   NR
Sbjct: 194 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 253

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
           A V  GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  
Sbjct: 254 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 313

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376
           LL+++D      +A  L+ +N  RR+++  M + AE    + + Q   +   +V  +   
Sbjct: 314 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 372

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432
            WHPG++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  ++        G
Sbjct: 373 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 432

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGLT++          F+     +V   +       DG L A  ++   
Sbjct: 433 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 492

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551
              L   GP+G G P P+F     ++   RV+   HL+M        + L AI F  +  
Sbjct: 493 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 551

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      +R+ +   L  + +RG    QL V  A  +E
Sbjct: 552 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 586


>gi|28198319|ref|NP_778633.1| single-stranded DNA exonuclease [Xylella fastidiosa Temecula1]
 gi|28056389|gb|AAO28282.1| single-stranded DNA exonuclease [Xylella fastidiosa Temecula1]
          Length = 613

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 174/582 (29%), Positives = 271/582 (46%), Gaps = 39/582 (6%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ RV   R  +         P +  L+  P +L++   A   + + I  + +I++
Sbjct: 29  NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 84

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TV
Sbjct: 85  VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 144

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G   +  +  A  +G  V+V DHH        A  +VNPN   DL     L   GV+F
Sbjct: 145 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIF 204

Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
            VL+ +   L                         DL SLLDLVA+ TV D+VPL   NR
Sbjct: 205 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 264

Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
           A V  GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  
Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376
           LL+++D      +A  L+ +N  RR+++  M + AE    + + Q   +   +V  +   
Sbjct: 325 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 383

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432
            WHPG++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  ++        G
Sbjct: 384 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 443

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++ K GGHAMAAGLT++          F+     +V   +       DG L A  ++   
Sbjct: 444 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 503

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551
              L   GP+G G P P+F     ++   RV+   HL+M        + L AI F  +  
Sbjct: 504 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 562

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                      +R+ +   L  + +RG    QL V  A  +E
Sbjct: 563 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 597


>gi|261416309|ref|YP_003249992.1| single-stranded-DNA-specific exonuclease RecJ [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372765|gb|ACX75510.1| single-stranded-DNA-specific exonuclease RecJ [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327274|gb|ADL26475.1| single-stranded-DNA-specific exonuclease RecJ [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 570

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/581 (27%), Positives = 263/581 (45%), Gaps = 36/581 (6%)

Query: 30  ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           A  ++    IP  VAR LV+R + ++  A   L  S    + DP ++   DKA   I+  
Sbjct: 6   ASTLSSTLKIPHAVARFLVSRGIKTVSDAYHML-CSSESDVHDPFLMMGMDKAVEWILAV 64

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
               E++ IFGDYD+DG  SV L+ R L    + +   +P+R  DGYG + S +++    
Sbjct: 65  RERGERVFIFGDYDLDGMTSVTLLTRCLKTVGIESEWRLPNRFGDGYGLSVSAVDEMYEA 124

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AYALVNPNRLDDLSGQG 207
           GA+ +ITVD G T+   + +A   G+ V+V+DHHQ   + +P +  L++P++  D     
Sbjct: 125 GARNLITVDTGITANVEIAHAKELGMAVMVMDHHQPSGDGLPVSDVLLDPHQEGDNYPNP 184

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
            LC  GV +  +  ++  L     V         LDLVAL T+ D+V +   NR +   G
Sbjct: 185 ELCGVGVSYKFICALFSRLGIKAPV-------EYLDLVALGTLADLVQMTPENRYFTRTG 237

Query: 268 LMVARRQGNPGLKALI-ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           L   +    PG++ +    +   S +   ++ Y + P +NA GR+   +   +LL+ ++ 
Sbjct: 238 LESLKNSRWPGVQEMYTSLMKPHSCVGGIDVMYKLAPLLNAPGRMERPDPALKLLLCENK 297

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            E   L  +L   N  R+  E+ + E A  +V     D    +VIVV G+ WH G++G++
Sbjct: 298 GEAGKLLEELKDWNARRKQKEAEITEMAMEQVKALYGDTI-PTVIVVAGENWHVGVIGIV 356

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           AA+L ++F RPS  +S    G    S R++ GF+  K         +  + GGHA AAG 
Sbjct: 357 AAKLAQEFHRPSAVLSIIN-GMAHASARAVPGFNWHKA--LFDSRELFDRWGGHANAAGF 413

Query: 447 TVERVNFGRLCDFFQKFAHNI---VPALITTPVFKIDGVLNASAVNIAL----------- 492
           ++E      L     + A +       + T   +  D  +    + +             
Sbjct: 414 SLEAGKIEELRGRLLQSAKDQGYTGEVINTDESYPYDIKIALRELTVETRVPTGRYPIRE 473

Query: 493 ---IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
              ++ ++   P+G   P P F   N  +  +R +   HLQM      S    AIAF + 
Sbjct: 474 RSILEFIDLLEPFGGNFPYPAFRAENVTVHRVRELRGGHLQMEISQAGSAVFPAIAFGLR 533

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +      +  R + + V      NY+  +K  QL +    
Sbjct: 534 KSKA----LLGRSRPVTVVFEPIWNYYNNTKTVQLCIKSIE 570


>gi|256959099|ref|ZP_05563270.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           DS5]
 gi|257079130|ref|ZP_05573491.1| single strand DNA-specific exonuclease [Enterococcus faecalis JH1]
 gi|256949595|gb|EEU66227.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           DS5]
 gi|256987160|gb|EEU74462.1| single strand DNA-specific exonuclease [Enterococcus faecalis JH1]
          Length = 703

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G + ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVSGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQGTS---DVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|227824351|ref|ZP_03989183.1| exonuclease recJ [Acidaminococcus sp. D21]
 gi|226904850|gb|EEH90768.1| exonuclease recJ [Acidaminococcus sp. D21]
          Length = 778

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 177/571 (30%), Positives = 277/571 (48%), Gaps = 23/571 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
                 L   +   +  ++  +L  RN++  +  + FL+ S      DP  L   ++A  
Sbjct: 12  PLDPDLLETGKALGLSPVLMGILKRRNLTDPEAIRTFLDGSPEPFH-DPYGLLHMERAVT 70

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVDGYGPNPSLM 142
           RI +A+   EKI I+GDYDVDG ++ +L   FL  +    A +YIP R  +GYG N   +
Sbjct: 71  RICEALSKEEKITIYGDYDVDGTSASSLFFLFLTKNLGAKAAVYIPRRDTEGYGLNLEAL 130

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           EK    G+ L+ITVD G +  D ++ A   G+DVI+ DHH    E  PAY +VNPN+  D
Sbjct: 131 EKIYAGGSTLVITVDTGISGADVIKKAPT-GLDVIITDHHLAPQELPPAYTVVNPNQPGD 189

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
              +  +C  GV F +   +++        P +     L++L A+ATV DVVPL+G NR 
Sbjct: 190 SYPEKGICGCGVAFKLCQALWQHF-----HPESALWTDLIELAAVATVADVVPLVGENRE 244

Query: 263 YVVKGLMVARRQGNPGLKALIE-RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
            V +GL         GL+ALI+      SPIT++ +G+ IGP INA GR+ ++ L  +LL
Sbjct: 245 IVRRGLKKIANTSLVGLRALIQSATREGSPITSDTIGFGIGPRINAAGRLDDAMLAVKLL 304

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           I+ DS+E + L+ +L+ LN  R+ +   + E+AEA +            IV+  + WHPG
Sbjct: 305 ITSDSEEAKTLSRELNDLNAKRQEISQRIFEEAEAMLTA--SGKVPTWGIVLAKEGWHPG 362

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           ++G++A+RL EK+  P+  +S ++ G   GS RSI    +   +        L++ GGHA
Sbjct: 363 VIGIVASRLTEKYHEPTILMSIKD-GIAKGSCRSIPPVHLYHALEACRL--ALIQFGGHA 419

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA-SAVNIALIDMLESAG 500
            AAGLT+E      L   F +     +   I  P  + D  +    AV   ++  LE   
Sbjct: 420 QAAGLTMEADKVDELRHLFTETVKTALHGEIYEPEVEPDYFIPEGEAVTEKIVHELERLQ 479

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G  NP P+  F    +  +R +     HL++   S      + + +            
Sbjct: 480 PFGQNNPAPILGFERAVITGVRTMGKDGSHLRLDLSS-GGYGYKGLLW----QEGPRSHY 534

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              G+   V     +N +RG     L V   
Sbjct: 535 FYEGEEAAVAFVPRLNTFRGVTTVDLEVKAV 565


>gi|257082433|ref|ZP_05576794.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           E1Sol]
 gi|256990463|gb|EEU77765.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           E1Sol]
          Length = 703

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 163/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYALV+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYALVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S    A ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|257416210|ref|ZP_05593204.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           AR01/DG]
 gi|257158038|gb|EEU87998.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           ARO1/DG]
          Length = 703

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R + GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFLHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S    A ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|237756012|ref|ZP_04584595.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691828|gb|EEP60853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 574

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 167/598 (27%), Positives = 290/598 (48%), Gaps = 37/598 (6%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66
           +E  ISG++W+ L           + +K+   +I A+VL NR      D+++D++ P ++
Sbjct: 1   MEIGISGYQWIDLSKTNPAPDF--LVKKYG--EIFAQVLYNRRDLFDKDFSQDYIFPELK 56

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+ +P      ++ A ++V+ I     I+++GDYD DG  S +L++ F     VNA  Y
Sbjct: 57  NLV-NPSYFHSLEEVALKLVEHIKRKTPIIVYGDYDADGITSTSLLINFFKDLGVNAKYY 115

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP R  +GYG N   ++K    G  L I  D G+ ++D L YA + G++V V+DHH+   
Sbjct: 116 IPSRFSEGYGLNKEAIKKLSEHGKVL-IVCDSGTNAFDELFYAKSLGLEVFVLDHHEPSH 174

Query: 187 EEIPA--------YALVNPNRLDD---LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
                          ++NP    D        HL   G+ F ++ +I R+L  D      
Sbjct: 175 LWQNYTPPFLSEKINIINPKFYSDKLINPLFKHLATVGIAFYLIAIIRRLLNID------ 228

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
             L   LD+VA+ TV DVVP+  +NR  V  GL    +Q   G+K L+    +   +T++
Sbjct: 229 IKLRDYLDIVAIGTVADVVPMSFINRVMVKIGLEELNKQKRAGIKELLNVARVKKELTSQ 288

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           ++G++IGP INA GR+ ++    +LLI+ D  +  +LA++L+ LN+ R+ +   ++ +AE
Sbjct: 289 DIGFIIGPRINASGRLADARNSVKLLITRDQSKANVLAIELENLNKKRQKLTDNVISEAE 348

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
            ++  Q       +VIV+  + WH G+VG+ A RL EK+  PS  +S   +GK +GS RS
Sbjct: 349 KELQNQ----DLKNVIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VSNGKAVGSARS 403

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           +   +I K +       +  K GGH+MAAG++++      L +   +     V       
Sbjct: 404 VSKVNIYKALDKC--RDLFDKFGGHSMAAGMSLKTSLIAELKERLNQAVEE-VAEEKPWA 460

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535
           V +ID  +  S      +  + +  P+G  NP P F   N K++         L +  + 
Sbjct: 461 VKEIDMEVELSYWTTEKVKEIYTLQPFGEKNPIPKFLARNLKIEFFTNPAKNLLILNLKD 520

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           ++     A +++            S G  + +     +NY++G +     + D   V+
Sbjct: 521 ENKNIFNAKSWKAKEL----LDKLSVGMIIDIVYTPEINYYKGLENLDFVIDDLKIVK 574


>gi|225848247|ref|YP_002728410.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644317|gb|ACN99367.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 574

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 159/595 (26%), Positives = 284/595 (47%), Gaps = 37/595 (6%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66
           ++  +SG++WV L       +   + ++    ++ A+VL NR      D++ D++ P +R
Sbjct: 1   MDIGLSGYQWVLLSQTNPAPQ--HLKERFG--EVFAQVLYNRKDLFDKDFSDDYIIPQLR 56

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+ +P      ++ A ++V AI   ++I+I+GDYD DG  S AL++ F     V    Y
Sbjct: 57  NLI-NPSYFYSLEEVAIKLVDAIKKQKRIVIYGDYDADGITSTALLVNFFRDIKVPVKYY 115

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP R  +GYG N   + K I+  A ++I VD G+ + + L YA + G++V V+DHH+   
Sbjct: 116 IPSRFTEGYGLNKEAI-KSISTEADILIVVDSGTNAIEELLYAKSLGLEVFVLDHHEPSD 174

Query: 187 EEIPA--------YALVNPNRLDDL---SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
                          +VNP   DD        HL   G+ F ++ LI R+L  +      
Sbjct: 175 FWTDKNPLSFDSSINIVNPKFYDDEKISPMFKHLATVGIAFYLISLIKRLLNIE------ 228

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
             L S LD+VA+ TV DVVP+  +NR  V  G+    ++   G+  L E  +I   I  +
Sbjct: 229 IKLRSYLDIVAIGTVADVVPMSFINRVMVKTGIEEINKKHRVGITKLTEAASIQRDINTQ 288

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           ++G+MIGP INA GR+ ++    +LLI+ D     +LA +L+ LN+ R+ +   ++++AE
Sbjct: 289 DIGFMIGPRINAAGRLADARKSVKLLITKDETRATILANELENLNRKRQKITDNVIKEAE 348

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
               ++ +     + IV+  + WH G++G++A +L EK+  P+  +S  E+GK +GS RS
Sbjct: 349 ----SELNKYPFENAIVLGRENWHSGVIGIVAGKLAEKYKIPTVILS-IENGKAVGSARS 403

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           +   +I K +     + +  K GGH+ AAG + +      L     +     V       
Sbjct: 404 VAKVNIYKALDKC--KDLFEKFGGHSAAAGFSTKSDKIHDLRYRLNRSVEE-VAEEKPWA 460

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535
           V ++D  +  S  +   I  +    P+G  NP P F   + ++    V     + +    
Sbjct: 461 VKEVDMEVPLSYWDKGKILQIYQLAPFGEKNPYPKFIDRHLRVDYFSVYGKNLVILDLRD 520

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           ++ +      ++            S G  + +     ++ ++G +  +  V D  
Sbjct: 521 RNKKVFTVKWWKGQDI----INQISVGSIIDIVYIPEISNYKGIESVEFIVDDIR 571


>gi|302335522|ref|YP_003800729.1| exonuclease RecJ [Olsenella uli DSM 7084]
 gi|301319362|gb|ADK67849.1| exonuclease RecJ [Olsenella uli DSM 7084]
          Length = 1117

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 269/582 (46%), Gaps = 26/582 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           +   RW  L       R   + +   +  +VAR L  R V  +D A+ FL PS+     D
Sbjct: 5   LGSRRWELLPQDAAAERC--LREGCGVSSLVARTLAARGVKDVDEARRFLTPSLERDWAD 62

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           PL++   + AA+R+  A+   E I +FGD+DVDG ++  L+   L     + + YIP R 
Sbjct: 63  PLLIPGMEGAAQRVGAALDRHETIAVFGDFDVDGMSATCLLTLALRKLGGDVHPYIPYRF 122

Query: 132 VDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
            +GYG +   + + I      LI+TVD G  + + + +   +GIDV+V DHH+  +E +P
Sbjct: 123 GEGYGLSDEALSRVIEGCDPDLIVTVDNGIAAREEVSHLGERGIDVVVTDHHE-PAELVP 181

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
               V   ++D       L  AGV   ++ ++     Q +            ++  L T+
Sbjct: 182 VGVPVTDPKIDPACVSRELAGAGVALKLVQVLGERRGQPDLW------RRYTEVATLGTI 235

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGG 309
            D++ L G NRA V  G+   R+   PG+ AL     +  S ITA+ L + + P +NA G
Sbjct: 236 SDMMLLEGENRALVADGIAQMRQTRRPGIVALAATSGVDLSSITADELPFSLIPRLNAAG 295

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G +++   LL++DD+    +LA +L+  N  RR +ES + ++A  KV           
Sbjct: 296 RMGTTDVAFDLLLTDDAAVAAVLAGRLERTNAERREIESRLTDEAMEKVEAT---YDGGR 352

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           V+VV G+ WH G+ G++A+R+  ++  PS   +  + G   GSGRS+   D+ + V    
Sbjct: 353 VVVVGGEGWHEGVKGIVASRIANRYHVPSILFTISD-GVARGSGRSVGTVDLFRAVERC- 410

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +LV+ GGHA A G+T    N         +     +P        ++   +  S ++
Sbjct: 411 -SDVLVRFGGHAGAVGVTCAASNLDAFRSRLGEVMG-QLPEEQFVDRGEVSAPVGLSEMS 468

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
           +  ID LE   P+G GN  P+FA     +++   V     HL+    +     + AI FR
Sbjct: 469 VEAIDSLEVLQPFGQGNKKPLFAVHGVCMRNRTRVGASGNHLRF-VATDGVNPVPAIMFR 527

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                       +    + +        W+G  + +L V D 
Sbjct: 528 TPQIERACDCEAA----VDLVFEPVNETWQGRTKPKLMVRDI 565


>gi|319942338|ref|ZP_08016653.1| single-stranded-DNA-specific exonuclease RecJ [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804211|gb|EFW01111.1| single-stranded-DNA-specific exonuclease RecJ [Sutterella
           wadsworthensis 3_1_45B]
          Length = 563

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 173/578 (29%), Positives = 264/578 (45%), Gaps = 29/578 (5%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
               +     LA++        +AR L  R +        L      ++P P +L    +
Sbjct: 7   RPYDQHAADRLALS---GFLPPIARALAARGI---QVPSDLEQEWAGMLP-PAMLEGTRE 59

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           AA R+  A    + + I  DYD DGA + A+ +R L    + AN ++PDR++ GYG  P+
Sbjct: 60  AAERLALARERHQAVTIVADYDCDGATACAVGIRGLRMLGITANYFVPDRVLHGYGLTPN 119

Query: 141 LMEKFI--NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
           +++          LI+TVD G +S  A+  A   GIDVI+ DHH   +E   A A+VNPN
Sbjct: 120 VVDIVAARTPKPDLIVTVDNGISSAAAVDRARELGIDVIITDHHLPGAELPRAQAIVNPN 179

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPL 256
                    +L   GV++ VL+ +  +LR+           L +L+D VAL TV DVV L
Sbjct: 180 LTGSTFPSKNLAGVGVIYYVLLALRSLLRERGVFDAKTQPRLDALVDFVALGTVADVVKL 239

Query: 257 IGLNRAYVVKGLMVAR-RQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGES 314
              NR  V +G+   R  + + GL+AL              + G+ + P INA GR+G  
Sbjct: 240 DKNNRILVSQGIRRIRGGRTHAGLEALFAIAGRDIRTAGVRDFGFAVAPRINAAGRLGTM 299

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
             G   L+SDD       A  L+ +N  RR +ES M + AEA +     D+   +   + 
Sbjct: 300 ENGIECLLSDDPAAALDFAESLNSINTERRELESEMQQLAEAALA--NIDLDHHATFTIF 357

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EG 432
              ++ G+VGL+AARLKE+  RP  A +  E+G+  GSGRSI G  +   +    +   G
Sbjct: 358 NPSFNEGVVGLVAARLKERIHRPVIAFAPTENGELKGSGRSIPGIHLRDALDLTAKALPG 417

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ++++ GGHAMAAGL+++   F      F++   +   A +   V   DG L    +  AL
Sbjct: 418 VVLRFGGHAMAAGLSIKPEGFKDFQAAFEEVIRSRCDASVFERVVLTDGGLAPDEITEAL 477

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
              ++    +G G   P+FA     + S  ++   HL+M  E        AI FR     
Sbjct: 478 CQEIDE-QIWGQGFEAPLFANE-VHVLSQTLLKGTHLKMMLEL-GGSRFDAIFFRRKE-- 532

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                         +     VN +RG +  QL V  A 
Sbjct: 533 -------PLASLTRIAYRPSVNEFRGRRTVQLVVEAAE 563


>gi|257086976|ref|ZP_05581337.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis D6]
 gi|256995006|gb|EEU82308.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis D6]
          Length = 703

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 162/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S    A ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|167837156|ref|ZP_02464039.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           thailandensis MSMB43]
          Length = 507

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 166/508 (32%), Positives = 244/508 (48%), Gaps = 23/508 (4%)

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
             K+++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E        
Sbjct: 14  GRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELAATRKPD 73

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNPN+        H+  
Sbjct: 74  LLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFPSKHIAG 133

Query: 212 AGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
            GV+F VL+ +   LR             L  LLDLVAL TV DVV L G NR  V +GL
Sbjct: 134 VGVMFYVLLALRAELRARGAFGERRPEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGL 193

Query: 269 MVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
              R        A + R       +A   +LG+ +GP +NA GR+ + +LG   L +DD 
Sbjct: 194 QRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIECLTTDDI 253

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
                LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I +    WH G++G++
Sbjct: 254 GRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQGVIGIV 311

Query: 387 AARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAM 442
           A RLKE+F RP+F  +  +DG     GSGRSI GF +   +      E  ++V  GGHAM
Sbjct: 312 AGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVTFGGHAM 371

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AAG+T++  N  R    F+  A   +       V + DG L  +     ++++L+ A  +
Sbjct: 372 AAGVTLDTGNVPRFAAAFEAVAREWLTDDALARVIETDGDLEDAYFTPQVVELLD-AAVW 430

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
           G G P P+F+     + S  +V   HL++    +  +   AI F                
Sbjct: 431 GQGFPAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHAE---------PLP 479

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            R  V   L  + W G  R QL V  A+
Sbjct: 480 ARATVAFRLASDTWNGMTRVQLIVEHAA 507


>gi|257085065|ref|ZP_05579426.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           Fly1]
 gi|256993095|gb|EEU80397.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           Fly1]
          Length = 703

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVI+ DHH++  +   AYALV+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIITDHHELPEQLPEAYALVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|256961808|ref|ZP_05565979.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           Merz96]
 gi|256952304|gb|EEU68936.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           Merz96]
          Length = 703

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 502


>gi|255975726|ref|ZP_05426312.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T2]
 gi|255968598|gb|EET99220.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T2]
          Length = 703

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 502


>gi|255972674|ref|ZP_05423260.1| predicted protein [Enterococcus faecalis T1]
 gi|257090004|ref|ZP_05584365.1| single-strand DNA-specific exonuclease recJ [Enterococcus faecalis
           CH188]
 gi|255963692|gb|EET96168.1| predicted protein [Enterococcus faecalis T1]
 gi|256998816|gb|EEU85336.1| single-strand DNA-specific exonuclease recJ [Enterococcus faecalis
           CH188]
          Length = 703

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 162/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S    A ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|256619183|ref|ZP_05476029.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           ATCC 4200]
 gi|256853245|ref|ZP_05558615.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis T8]
 gi|256598710|gb|EEU17886.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           ATCC 4200]
 gi|256711704|gb|EEU26742.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus
           faecalis T8]
          Length = 703

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 160/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   A+A+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAFAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRKIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|257419415|ref|ZP_05596409.1| predicted protein [Enterococcus faecalis T11]
 gi|257161243|gb|EEU91203.1| predicted protein [Enterococcus faecalis T11]
          Length = 703

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|256965005|ref|ZP_05569176.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           HIP11704]
 gi|256955501|gb|EEU72133.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis
           HIP11704]
          Length = 703

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|254302794|ref|ZP_04970152.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322986|gb|EDK88236.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 844

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 168/581 (28%), Positives = 285/581 (49%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W  L  +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KW-LLENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI N++KI I+GDYDVDG  SV+L+   LS  S N N YIP R  +GYG
Sbjct: 55  DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELSANVNYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A L+I+VDCG  S + + +A    +D I+ DHH++  +   A A++N
Sbjct: 114 LNKDAIQNLKNENADLVISVDCGINSIEDINFANELNLDFIITDHHEITGDIPKALAIIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSFKYLAGVGTAFMLVYALYIKMNKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           I  NR +V +GL   R     G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 ISDNRKFVKRGLETLRNSKWIGIKQLLRKIFPDNWDTREYFAYDIGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I +D      +  KL   N  R+ ++  +LE +  ++  +   +   ++I+
Sbjct: 288 DAKQAVTLFIEEDGFRCLSIIEKLLENNIERKNIQKKILEMSIIEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGIATASCRSIDGLNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N          +        +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRIDSYIEENFDKDLFIKKLKIEKILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F   
Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCQYENLRFTKNSTEHLMLDIKKDGYNFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 + + S  K + +   L +  ++    C+L++ D  
Sbjct: 524 DY----YDIISSSKNIDIAFKLKLEIFKDRYMCKLQLEDIK 560


>gi|33865740|ref|NP_897299.1| single-stranded-DNA-specific exonuclease [Synechococcus sp. WH
           8102]
 gi|33632910|emb|CAE07721.1| possible single-stranded-DNA-specific exonuclease [Synechococcus
           sp. WH 8102]
          Length = 634

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 152/542 (28%), Positives = 258/542 (47%), Gaps = 20/542 (3%)

Query: 53  SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112
           S +   + + P    L        D + A  RI +A    E + + GDYD DG  S AL+
Sbjct: 39  SEEDVAELITPQ--ELPDACGHFPDLEAAVERICRACEQGEALAVCGDYDADGMTSTALL 96

Query: 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ 172
           +R L      A   IP R+ +GYG NP+++++   +G +L++TVD G  + +ALQ A   
Sbjct: 97  LRALIPLGAKAEPAIPSRMEEGYGLNPAMVDRLHGQGIRLLVTVDNGVAAVEALQRARTL 156

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
            +DVIV DHH +        AL++P    + S    L   G+ +++   +   L + + +
Sbjct: 157 SMDVIVTDHHSIPEPRPWMTALLHPATTPEASPYRGLAGVGLAYVLASSVAERLGRMDAI 216

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
            +        DL  + TV D+ PL G NR ++++GL    R    G+ AL        +P
Sbjct: 217 QVAR------DLFCIGTVADMAPLTGANRRWLLEGLTTLHRSRCEGVVALQRLAGLGETP 270

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           +TAE++G+ + P INA GR+G+  L   LL   D  +   LA + D LN+ RR +  A+ 
Sbjct: 271 LTAEDIGFQLAPRINAVGRLGDPVLVVDLLTESDPGKTMALARRCDDLNRQRRDLCDAIE 330

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
            +A A V +  + +     +++    WH G++G++AARL E++ RP   ++ + +G    
Sbjct: 331 AEATALVESDAEGLI-PPFLLLAQSHWHHGVIGIVAARLMERYHRPVALLAGDGEGLLRA 389

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S R+ +GF + K ++      +L + GGH  A G TV+      L D   +     +   
Sbjct: 390 SARAPQGFAVDKALTTC--ADLLERFGGHPAAGGFTVKASQVHALHDRLNQLTQPWLDQE 447

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
                 + +  L  + +N  L   LE+  P+G G+P P+F     ++   R +N  HL +
Sbjct: 448 GAGRPVRPEACLKLNEINWDLWAALETLTPHGVGHPAPLFWSRGCQVADWRTLNGGHLAV 507

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T +    +  +A+A+R          +    +R+ V   L +N WRG +R QL +     
Sbjct: 508 TLQQGTHQR-RAVAWRCS-------PLTPMPERVDVAYELKLNVWRGERRLQLELKSIRE 559

Query: 592 VE 593
             
Sbjct: 560 HT 561


>gi|114775420|ref|ZP_01450988.1| single-stranded-DNA-specific exonuclease RecJ [Mariprofundus
           ferrooxydans PV-1]
 gi|114553531|gb|EAU55912.1| single-stranded-DNA-specific exonuclease RecJ [Mariprofundus
           ferrooxydans PV-1]
          Length = 565

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 170/549 (30%), Positives = 264/549 (48%), Gaps = 20/549 (3%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L  R ++   + DF +P +  L PDP  + D DKAA R+ +AI N E I IFGD+D DG
Sbjct: 35  LLDARGLT--ESDDFFSPRLADL-PDPFAMKDMDKAATRLARAIGNGEAIHIFGDFDADG 91

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK-FINEGAQLIITVDCGSTSYD 164
               A+++  L          IP R  DG+G     + +       ++ ++VD G+T +D
Sbjct: 92  VNGTAILVEALRAAGATVTFSIPHRADDGHGVGVESVRQVVAESACRMGLSVDTGTTCFD 151

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
           A   A   G D+I+ DHH  ++    A+AL+NP R D    +  LC  GV F +L+ +++
Sbjct: 152 ACDEAARLGFDLIISDHHLPEATLPAAFALLNPARSDCGFAERALCGTGVAFFLLMAVWK 211

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
            L      P    L +LLD VA+ATV DV+ L+G+NR  V  GL       + G+ AL++
Sbjct: 212 KLTDQGNRPAYD-LRALLDRVAVATVADVMDLVGVNRILVAHGLQRLNSAPSIGMAALMQ 270

Query: 285 RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRR 344
              ++  +TAE +G+ + P INA GR+       RLL + D+ E   LA +LD  N+ RR
Sbjct: 271 VARVNKTVTAETIGFHLAPRINAAGRMQHGEAAMRLLSTSDAGEALRLAEQLDETNKQRR 330

Query: 345 LMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404
            +E  + +QAE K+           V+ V  +RWH G+VGL A RL  K GRP+      
Sbjct: 331 KVEVEVFKQAEEKL-------ADTDVLAVYDERWHAGVVGLAAGRLARKHGRPAAVGFVT 383

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
            +G    S R + GF IG +++       L   GGHA A G T+   N+      F    
Sbjct: 384 PEGDIRVSLRGMNGFHIGALLNDC--SDHLAGFGGHAGAGGGTITAGNWAAFHAAFAAAV 441

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
                 +    V ++DGVL A A++  L + L    P+G  NP  ++   + ++   R +
Sbjct: 442 ARQAEGVSDHLVQQVDGVLEAGAMHFGLAERLARFEPFGRANPPSLWLLRDIQIAERRNL 501

Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584
               +++      S  L  I F           +  +G  + + G L  + +RG +  Q 
Sbjct: 502 KGNVVRLKLTD-GSRWLDGIVFGAGAMNG----VIEQGMTVSLIGQLQKDDYRGGQAIQF 556

Query: 585 RVLD-ASPV 592
            + D  +P 
Sbjct: 557 VIEDAIAPA 565


>gi|237744093|ref|ZP_04574574.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           7_1]
 gi|229431322|gb|EEO41534.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           7_1]
          Length = 844

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 162/580 (27%), Positives = 283/580 (48%), Gaps = 33/580 (5%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L D
Sbjct: 7   WIL-ENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLKD 55

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            D A +RI +AI +++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG 
Sbjct: 56  MDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYGL 114

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N   ++   NE A LII+VDCG  S + + +A    +D I+ DHH++  +   A A++N 
Sbjct: 115 NKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVINS 174

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL+
Sbjct: 175 KRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPLV 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIGE 313
             NR +V +GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ +
Sbjct: 229 SDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLED 288

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     L + +D  +   +  KL   N  R+ ++  +LE +  ++  +   +   ++I+V
Sbjct: 289 AKQAVSLFVEEDGFKCLSIIDKLLENNAERKNIQKKILEMSIVEI--EKKQLYNKNLILV 346

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEG 432
               +H G++G++A+++ +K+ +P+  +  +E +G    S RSI+G +I  +        
Sbjct: 347 ANKSFHHGVIGIVASKILDKYYKPTIIMEIKESEGVATASCRSIDGLNI--VECLNSVSD 404

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ILVK GGH+ AAG T++  N         K+        +     KI+ +L    VN   
Sbjct: 405 ILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYEF 464

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F    
Sbjct: 465 LKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGGD 524

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                +   S  K + +   L +  ++    C+L++ D  
Sbjct: 525 Y----YDTISGSKSIDIAFKLKLETFKDRYMCKLQLEDVK 560


>gi|313683635|ref|YP_004061373.1| exonuclease recj [Sulfuricurvum kujiense DSM 16994]
 gi|313156495|gb|ADR35173.1| exonuclease RecJ [Sulfuricurvum kujiense DSM 16994]
          Length = 533

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 157/523 (30%), Positives = 253/523 (48%), Gaps = 31/523 (5%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +P P  L D  K A R+ +AI N E+I + GDYDVDG  S A++ RF    S      IP
Sbjct: 35  IPHPSNLKDAQKGADRLARAIRNHERIALVGDYDVDGVTSTAIVKRFFDLISYPLITTIP 94

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  DGYG + +++E+     A +I TVD G  + +A +    +GID+I+ DHH      
Sbjct: 95  NRFSDGYGVSKNVLERL---DADVIFTVDNGINAIEAAEVCKTRGIDLIITDHHTPGDTL 151

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             AYA++NP + D       +C A V +L + L+ + L          D+      +ALA
Sbjct: 152 PNAYAIINPKQSDCPYPFKEICGAQVGWLFMGLLKQELNLS------IDMRQFFPFLALA 205

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            + DV+PL+G+NRA V  GL + +         + + +N S+ +++E++ + I P IN+ 
Sbjct: 206 IIADVMPLVGINRAIVKTGLDMMQTSSLSPFVMIRDFLNRSA-VSSEDIAFQIAPRINSA 264

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ ++++    L++D +++       L  LN  R+  E+    +A   V  +       
Sbjct: 265 GRLEDASIALEFLMADTTEKAYHQFELLTALNTLRKETEAQTTAEAMLHVNPKEQ----- 319

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            +IVV G+ W+ G+VG++A+RL   F +P+  +S    G   GSGRSI   D+  ++   
Sbjct: 320 -IIVVAGEHWNEGVVGIVASRLVNHFQKPAIVLSVHN-GIAKGSGRSIGNVDLYSLIKS- 376

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            +E  L K GGH MAAGL++   +           A   +      P   I G L    +
Sbjct: 377 -QEKHLQKFGGHKMAAGLSMS-SDAIEAFRLGINEAAKQINPADFIPHSDIIGELEHEMI 434

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ--DSETLQAI 544
           N  L+++LE   PYG GNP P F      + ++++     +H ++         +TL+ I
Sbjct: 435 NFQLLELLERFEPYGEGNPRPRFLIREADVVTVKLFGSDQSHSRLELRPSRLSPKTLELI 494

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           AFR         L     K+M  +  +  N W G    QL V 
Sbjct: 495 AFR-------RTLECPENKKMSCSYTVNKNEWNGRVSIQLMVE 530


>gi|303327245|ref|ZP_07357687.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp.
           3_1_syn3]
 gi|302863233|gb|EFL86165.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp.
           3_1_syn3]
          Length = 574

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 166/585 (28%), Positives = 271/585 (46%), Gaps = 20/585 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
             W    G  G   +    ++ +I  ++  +L  R ++   A +DFL+  +  L P P  
Sbjct: 2   KNWQFREGPPGTPPSGW-AEQLSISPLLLEILWKRGLTEAEAMEDFLSARLNALTP-PSC 59

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                +AA  + Q + + +K+ ++GDYDVDG  +  L +  L    + A  ++PDR  +G
Sbjct: 60  WPQIPQAAELLAQELLSGKKLAVWGDYDVDGITASTLTLDVLEAHGIMAGHHLPDRRSEG 119

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N   +E    +G  +++TVDCG +  +A++ A   G+ V++ DHH   +E  PA A+
Sbjct: 120 YGLNIPQIELLAAQGYGILLTVDCGISDLEAVRRARELGMTVVISDHHLPPAELPPAQAI 179

Query: 195 VNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
            NP   + + S   HL   GV F ++  +   L         + +   LDLVAL T+ DV
Sbjct: 180 CNPRLDEAEASPCPHLAGVGVAFYLMAAVNAAL--APHTDKRYKMDEALDLVALGTLADV 237

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRI 311
           + L G NR  V  GL    +   PG+ AL         + +++  + + + P INA GR+
Sbjct: 238 MRLTGENRILVRGGLGKLAKAARPGMAALKVVSGFDAAASLSSGQVVFRLAPRINAAGRM 297

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G++ L  +LL   D      LA +LD LN  RR  E  +   A  +   Q     +AS+ 
Sbjct: 298 GQAELALQLLREKDYAAAARLAAQLDALNTERRAEEERIHAAARVQAEKQLSRGPRASL- 356

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ G  WHPGIVG++A+R+ ++F RP+  +  E+ G   GSGRS+  FD+      A   
Sbjct: 357 VLYGQDWHPGIVGIVASRIVDEFYRPTIIL-CEDQGNLKGSGRSVREFDLH--SGLAATA 413

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             L+  GGH +AAG+ +E        + F   A   +      P   ++  L+ +     
Sbjct: 414 PCLLGFGGHRLAAGVRLEPQRLEEFRERFDAVAAEALGPEPLRPTLTLECELDFARAGEQ 473

Query: 492 -LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSETLQAIAFR 547
             +  LE   P+G GN  PVFA P   ++    +     H+ +  + Q    TL A A+R
Sbjct: 474 CFLKELELLQPFGPGNAEPVFASPPLLVKERSFLGHSREHVLLRVQDQKSGVTLSAKAWR 533

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +             G+ + +     ++ + G     L V D  PV
Sbjct: 534 MAEA----LPPSLVGQTIRLAYTPRLDTYNGIVSVDLGVKDWQPV 574


>gi|94986757|ref|YP_594690.1| single-stranded DNA-specific exonuclease [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731006|emb|CAJ54369.1| Single-stranded DNA-specific exonuclease [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 568

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 148/582 (25%), Positives = 251/582 (43%), Gaps = 26/582 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
            +W++      I   L       IP+ +  +L  R ++  +    FL+P ++ L   P  
Sbjct: 2   KKWLTAPISSQIP--LHWANILHIPEPILILLWQRGITSLEEMNIFLSPKLQYLAH-PKH 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
            +  + A   +  AI   + I+++GDYDVDG     ++   L+       +++PDR  +G
Sbjct: 59  WSGIEDAVELLNNAIEQKQPIIVWGDYDVDGVTGSTVIREVLTFHQAQIIVHLPDRKKEG 118

Query: 135 YGPNPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YG N  ++E+        L+ITVDCG +   A+  A   G  VI+ DHH   +   PA+ 
Sbjct: 119 YGVNIPVIEQLALEHPKALLITVDCGISDVKAIYRARELGFTVIISDHHLPPTSLPPAHV 178

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           + NP   ++     +L   G+ F ++  +     +        D+  +LDLVAL T+ D+
Sbjct: 179 ICNPRIGEN--PCSYLAGVGIAFFLMAALNNKRAEQ--TGQRMDMRDVLDLVALGTLADM 234

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRI 311
             L G NR  V  GL+       PG+ AL      +    + A  + + + P INA GR+
Sbjct: 235 AMLSGQNRILVKNGLLKIAEAKRPGIAALKTVSGFTPLTHLGAGQVTFHLAPRINAAGRL 294

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G   +   +L +         A  L+ +N+ RR  E  +   A  +   +     Q   +
Sbjct: 295 GSPRIAHEMLYTTSKDFAIEHATLLNKINEERRSEEEYIFNAALEQAQLE----NQRQGL 350

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           V+ G  WH G++G++A+R+ E   +P   +  +      GSGRSI  FD+   +S     
Sbjct: 351 VLHGSDWHQGVLGIVASRITEAVHKPVLILCTDGK-MLKGSGRSIADFDLYHGLSQC--A 407

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NI 490
            +  + GGH  AAGLT+   +   L + F     N       TP+  ID  L      N 
Sbjct: 408 DLFERFGGHKQAAGLTLPINHLHILKERFDTVVRNFFGDTPITPILHIDMELPFQKATNF 467

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHL-QMTFESQDSETLQAIAFR 547
             +  LE   P+G GNP P+F+    ++Q          H+  +  E     +LQA  +R
Sbjct: 468 NFLKSLELLQPFGIGNPEPIFSSLPLRIQRCNTFGKHKEHINMLVVEEISGISLQAKGWR 527

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +            +  R+ +     +N++ G    +L + D 
Sbjct: 528 LAKN----ISSSLQNSRIQLAYTPSLNFYNGISSIELEIKDW 565


>gi|315637977|ref|ZP_07893162.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           upsaliensis JV21]
 gi|315481825|gb|EFU72444.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           upsaliensis JV21]
          Length = 528

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 151/549 (27%), Positives = 280/549 (51%), Gaps = 36/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       ++ L+  +  L P P  L D  KAA RI +AI  +EK+ I GDYD
Sbjct: 9   LRQILASR------FENDLHKKLCEL-PLPSCLKDIYKAANRIKEAIEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  ++  F      + ++ IP+R  DGYG N  ++ +   E  ++IITVD G  +
Sbjct: 62  VDGIISCVILSEFFDDIGFDYSVKIPNRFKDGYGLNEEIINEL--EDIKVIITVDNGIAA 119

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    +GID+I+ DHH        AYA++NP + +       +C A V + ++  +
Sbjct: 120 LEAAKLCKERGIDLIITDHHTPLQTLPEAYAIINPKQKECNFPNIEICGAQVAWYLIAAL 179

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A + D++ L  LNRA V +G+    +      +A+
Sbjct: 180 KEVCKLK------YDMCKFLELLAIAIIADMMELRDLNRACVRRGIECINKSKRAAFRAM 233

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            ++         +N+G++I P IN+ GR+ ++++  + L + D  +      ++   N++
Sbjct: 234 -KQYYQKDKFAIDNIGFLIAPLINSAGRMDDASVSYKFLHTKDLNKAMHYLEQIISFNES 292

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E++  ++       ++ S ++V G  WH G++G++A+RL + F +PSF  S
Sbjct: 293 RKDEEKQLFEESLRQI------DEKQSCVIVGGVEWHEGVLGIVASRLAKHFKKPSFVFS 346

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             ED K  GS RS+   DI  ++S A     L   GGH  AAGL++E  ++    +  QK
Sbjct: 347 INED-KLKGSARSVGKIDILNLISKANPY--LKNYGGHKGAAGLSLELKDYENFKNLIQK 403

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               ++         ++ GVL  S ++  ++++LES  P+G  NP P F   N K+++ +
Sbjct: 404 E-SALIDREEFLDTEEVLGVLEPSEIDFEMLEILESFEPFGYKNPRPYFVLENLKVKNKK 462

Query: 523 VVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++    +D++T++A+ F     P  E       + +++ G +  N +RG  
Sbjct: 463 LLGKEKKHLKLILV-KDNKTIEALFFNFDKEPNLE-------ESINLVGSISKNEFRGLV 514

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 515 TPQFIIQEL 523


>gi|327399023|ref|YP_004339892.1| single-stranded-DNA-specific exonuclease RecJ [Hippea maritima DSM
           10411]
 gi|327181652|gb|AEA33833.1| single-stranded-DNA-specific exonuclease RecJ [Hippea maritima DSM
           10411]
          Length = 569

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 264/509 (51%), Gaps = 15/509 (2%)

Query: 41  DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           +   ++L NRN+      K+FL PS+  L  +P +L D D A  RI +A+YNSE+I I G
Sbjct: 38  EATQKILENRNIKTQSQIKNFLYPSLSQLY-NPFLLKDMDIAIDRIARAVYNSERIFIVG 96

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYD DG  S +L++RF     V A  YIP R  DGYG +   ++K INE A+LIITVD G
Sbjct: 97  DYDTDGVTSTSLLLRFFKEIGVKAGFYIPTR-DDGYGLSLEAIKKAINEKAKLIITVDNG 155

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            TS D +++A   GIDVI+ DHH+ +     A+A+V+P R D       L   GV F ++
Sbjct: 156 ITSIDEVEFAKTVGIDVIITDHHEPQDVLPKAFAVVDPKRNDSKFPFKELSGVGVAFNLI 215

Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277
           + +   LR+D         +L   LDLVAL T+ D+VPL+  NR  V  GL         
Sbjct: 216 MALRNKLRKDGFFRGKGEPNLKKYLDLVALGTLADIVPLLDENRVCVKIGLFNKNHST-V 274

Query: 278 GLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           GL+ L +   I   +T++++G++I P INA GR+ ++++   + + DD++E E +A+KL+
Sbjct: 275 GLELLKKVSGIEGCLTSKHVGFVIAPRINAAGRLSDASIVVDMFLKDDAKEAETIALKLE 334

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
            +N  RR ++  ++ + E            ++VIV   + WH G++G++A  +  KF +P
Sbjct: 335 EINNQRRKLQLKIINEVEKYARNLS-----SNVIVAAKEGWHKGVIGIVANAIAYKFKKP 389

Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
           +  IS E     IGSGRSI   D+   +       IL + GGH MA G+T++        
Sbjct: 390 TIIISKENK-ISIGSGRSIGEIDLFSAIKE--TSDILERFGGHKMAVGITIKNDRIEEFS 446

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
           +   +           T  ++ D  +  S  N   ++ L    P+G  N  P+F   N  
Sbjct: 447 ERLNEIISTKYSEESATAKYEADCEVLLSIFNRRFVEELSLLEPHGPLNEEPLFFARNVV 506

Query: 518 LQSIRVVNLAHLQMTFESQDSETLQAIAF 546
           ++   ++   + +       + +L  ++F
Sbjct: 507 VKDEAMILDKYPK-YLLDDGTSSLWMVSF 534


>gi|257422493|ref|ZP_05599483.1| single-stranded-DNA-specific exonuclease recJ [Enterococcus
           faecalis X98]
 gi|257164317|gb|EEU94277.1| single-stranded-DNA-specific exonuclease recJ [Enterococcus
           faecalis X98]
          Length = 703

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 160/527 (30%), Positives = 252/527 (47%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   AYA+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPGAYAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +N  GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNVLGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S      ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D +      F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502


>gi|78212848|ref|YP_381627.1| exonuclease RecJ [Synechococcus sp. CC9605]
 gi|78197307|gb|ABB35072.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           CC9605]
          Length = 618

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 166/556 (29%), Positives = 271/556 (48%), Gaps = 21/556 (3%)

Query: 37  HAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
             +P  +  VL  R  S    A  FL+P    L P      D ++A  R+V A  + E++
Sbjct: 10  LDLPLALRCVLRRRGFSSTSEAASFLSPG--DLPPTRDHFPDLEQACDRLVAACRSRERV 67

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
            I GDYD DG  S AL++R L+         IP R+ +GYG NP+++++  ++G +L++T
Sbjct: 68  AICGDYDADGMTSTALLLRALAPLGAEPEPAIPSRMEEGYGLNPAMVQRLYDDGVRLLVT 127

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G  + +AL+ A +  + VIV DHH +  E  P  AL++P    + S    L   G+ 
Sbjct: 128 VDNGVAAREALELAASLTMQVIVTDHHTIPMERPPMTALIHPATTPEGSPYRGLAGVGLA 187

Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
           ++V   +   L +   + +        DL  + TV D+ PL+G NR+++++GL    R  
Sbjct: 188 YVVAHAVAEALNKPEAIRVAR------DLFCIGTVADMAPLVGANRSWLLEGLNQLHRSE 241

Query: 276 NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             G++AL         P+TAE++G+ + P INA GR+GE  L   LL ++D      LA 
Sbjct: 242 CKGVQALQHLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVDLLTAEDPDSAMALAR 301

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           + D  N+ RR +  A+  +A A V  +  D    S +++    WH G++G++AARL E++
Sbjct: 302 RCDDCNRQRRDLCDAIEAEAVALVEAES-DEALPSFLLLAQSHWHHGVIGIVAARLMERY 360

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
            RP+  ++ E DG    S R   GF + + +S      +L + GGH  A G TV+     
Sbjct: 361 HRPTALLAGEGDGSLRASVRGPIGFAVDRALSSC--SDLLTRFGGHPAAGGFTVKAELVH 418

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
            L +     A + +         + D +L    VN  L   L+S  P+G G+P P+F   
Sbjct: 419 ALHERLCSEADSWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSLAPFGIGHPKPLFWSR 478

Query: 515 NHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
              +   R +   HL +T    +SE  +AIA+R   +        +  +   V   + +N
Sbjct: 479 GVSVGDRRDLKGGHLALTLRQGESER-RAIAWRWDSS-------AAVPECCDVAYSISIN 530

Query: 575 YWRGSKRCQLRVLDAS 590
            W+G +R QL +    
Sbjct: 531 RWQGEQRLQLELKAIR 546


>gi|308233819|ref|ZP_07664556.1| exonuclease RecJ [Atopobium vaginae DSM 15829]
 gi|328944553|ref|ZP_08242014.1| hypothetical protein HMPREF0091_11239 [Atopobium vaginae DSM 15829]
 gi|327490954|gb|EGF22732.1| hypothetical protein HMPREF0091_11239 [Atopobium vaginae DSM 15829]
          Length = 1180

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/584 (25%), Positives = 254/584 (43%), Gaps = 27/584 (4%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMP 70
           S    RW  L     +     +     +P +VARVLV+R  +  +  + FL  S+     
Sbjct: 4   STQHNRWQLLSR--DLELEDKLINTCRLPRLVARVLVSRGYTTQEQIERFLIASLERDWV 61

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +PL +      A R+  A+ + E+I++FGD+DVDG  + AL+   L         +IP R
Sbjct: 62  NPLFIPGLAAVADRVQHALDSHERIVVFGDFDVDGICATALLTDALKTLGACVYPFIPSR 121

Query: 131 IVDGYGPNPSLMEK-FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           + +GY  + +  ++        LIITVD G  +++   Y+   G+DV++ DHH+  S+ +
Sbjct: 122 VHEGYSLSKAAFDRLVAAYNPNLIITVDNGIDAHEQCLYSIQHGVDVVITDHHEPTSQTL 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           P     NP      +    L  AGV   ++ ++     +       +     LD+  L T
Sbjct: 182 PVVPTANPKLNPSCASF-ELAGAGVALKLVDVLGAAYGK------PYLWKDYLDVATLGT 234

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAG 308
           + D V L   NRA V +G+   R     GL AL     I       E L   + P +NA 
Sbjct: 235 ISDRVKLTPENRALVTEGIRCIRASSRLGLSALARVCGIDIHATMPEELASSLIPRLNAA 294

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+        LL +    E    A +L+ LN  RR +E    ++A  +        QQ 
Sbjct: 295 GRLDRVQTAYNLLQAQSLSEAYTYANELEELNICRRNLEKKACDEAFEQAKDVVK--QQK 352

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            VI V   +W+ G++G++A+RL   +  P+FA S    G    SGRS+   ++  +V   
Sbjct: 353 HVIFVSSSQWNEGVIGIVASRLARAYELPAFACS-IAQGSAKCSGRSVGNVNLFDVVER- 410

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                L++ GGHA A G T        +    ++    +  + +  P   +   ++ S +
Sbjct: 411 -FGSQLIRFGGHAAAVGFTCSPDILPTIIQHVERTIDALPASALYAPRELV-IPVDLSEI 468

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546
            ++ +D LE   P+G+GN  P+FA  N ++++   V     H++     Q    L +I F
Sbjct: 469 TVSDLDSLEMLQPFGSGNERPIFAAHNIEMRNKMRVGAHNNHMRF-VAQQHKVRLSSIVF 527

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNY-WRGSKRCQLRVLDA 589
           +          + S      +  +  VN  W+G  + +L + D 
Sbjct: 528 KASHIQN----LMSLHDTCDIVFNP-VNEVWQGRVKPKLMIKDI 566


>gi|51245781|ref|YP_065665.1| single-strand DNA-specific exonuclease [Desulfotalea psychrophila
           LSv54]
 gi|50876818|emb|CAG36658.1| related to single-strand DNA-specific exonuclease [Desulfotalea
           psychrophila LSv54]
          Length = 552

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 151/558 (27%), Positives = 259/558 (46%), Gaps = 22/558 (3%)

Query: 42  IVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            + ++L  R      A ++FL+P +  L P P  +    +A   +++AI     I+I+GD
Sbjct: 6   PIEQILSLRGYQEAQAIEEFLSPRLSSL-PHPFTMLGMKEAVAEVLRAIDEGLPILIWGD 64

Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK-FINEGAQLIITVDCG 159
           YDVDG    ++++ F     V    +IP R+ +GYG N +  +     E   L+ITVDCG
Sbjct: 65  YDVDGTTGTSILVNFFERIDVKVYWHIPSRLTEGYGLNLTYFQNLPWAEEHFLLITVDCG 124

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            ++   ++    +G  VIV DHHQ+    +P   ++NP+          L   GV F ++
Sbjct: 125 ISNATEIEAIKKRGGRVIVTDHHQLPKR-VPNCTVLNPSNEKCPFYGTSLAGVGVAFYLV 183

Query: 220 VLIYRIL----RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
             +   L              +L S L  VA  T+ DVVPL  +NR  V  G+    R  
Sbjct: 184 AGVRNALVSGELNGKYSQSTPNLKSFLGFVAFGTLADVVPLTPVNRLLVKAGVESFARTE 243

Query: 276 NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             GL+AL+E  +I    +T++++G+ + P +NA GR G ++    LL S +++    +A 
Sbjct: 244 FIGLQALLESSDIADGSVTSDDIGFNLAPKVNAAGRYGVAHQVVELLTSKEAEPAYKIAK 303

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
            L  LN +R+L+    + + E  +  +      A   ++    +  GI+G+LA+RL ++F
Sbjct: 304 TLTKLNNDRKLLCKENMAEIETLLHIETIK---ADACIIVEGDFFEGILGILASRLVDRF 360

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
             P+   S   DG   GS RSIE  +I  +++      +L K GGH MAAG+++  +NF 
Sbjct: 361 HLPAIVFSRAADGDLKGSARSIEEINILDVITE--TSFLLKKFGGHKMAAGMSMSPLNFA 418

Query: 455 RLC-DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                F +      V  +     +++D  +     N   + + +   P+G GNP P F  
Sbjct: 419 AFRSAFVENLQRAEVKEIKQESRYELDASVE-QVFNPDSLALYQKMEPFGPGNPQPTFYD 477

Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
            +  + + R V     HLQ+T   +  + ++AI F +             G  + +    
Sbjct: 478 AHALIVAARPVGQSKEHLQLTIRGKYGDNIKAIGFNLGEKGRNVI----AGSTVKIIFTP 533

Query: 572 CVNYWRGSKRCQLRVLDA 589
            +N ++     Q R+LD 
Sbjct: 534 TINRFKERVSWQARILDI 551


>gi|256762619|ref|ZP_05503199.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T3]
 gi|256683870|gb|EEU23565.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T3]
          Length = 703

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 255/527 (48%), Gaps = 29/527 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KA  RI QA+   E+I+++GDYD DG  S  +M   +         ++P+R V GYGP
Sbjct: 1   MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  +  + I +G QLI+TVD G   ++A+ YA  QG+DVIV DHH++  +   A+A+V+P
Sbjct: 61  NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAFAIVHP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                    G L   GV F V   +   L              LLDLVA+ T+ D+V L 
Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316
             NR +V  GL + +     GL  L++   +    ++ E++G+ IGP +NA GR+GE+  
Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  L+ + D ++   +A  +D  N  R+ + + + ++A   +         A V ++   
Sbjct: 230 GVELMTTFDEEQSLEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435
            WH G++G++A R+ ++ G+P+  ++ +E G    GSGRSI   ++ + ++   E+    
Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH MAAG+T+   N   + +    F       +       I   L  S    A ID 
Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553
           L    P+G  N  P F F       IR +    AHL+    +Q+   L AIAF++   P 
Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            + L Q       V G L +N W G K+ QL V D + +    F  +
Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 502


>gi|57505887|ref|ZP_00371812.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           upsaliensis RM3195]
 gi|57015917|gb|EAL52706.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           upsaliensis RM3195]
          Length = 528

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 148/549 (26%), Positives = 276/549 (50%), Gaps = 36/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       ++ L+  +  L P P  L D  KAA RI +AI  +EK+ I GDYD
Sbjct: 9   LRQILASR------FENDLHKKLCEL-PLPSCLKDIYKAANRIKEAIEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  ++  F      + ++ IP+R  DGYG N  ++ +   E  ++IITVD G  +
Sbjct: 62  VDGIISCVILSEFFDDIGFDYSVKIPNRFKDGYGLNEEIINEL--EDIKVIITVDNGIAA 119

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
             A +    +GID+I+ DHH        AYA+VNP + +       +C A V + ++  +
Sbjct: 120 LGAAKLCKERGIDLIITDHHTPLQTLPEAYAIVNPKQKECNFPNIEICGAQVAWYLIAAL 179

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A + D++ L  LNRA V +G+    +        +
Sbjct: 180 KEVCKLK------YDMCKFLELLAIAIIADMMELRDLNRACVRRGIECINKSKR-AAFRV 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
           +++         +N+ ++I P IN+ GR+ ++++  + L + D  +      ++   N++
Sbjct: 233 MKQYYQKDKFAIDNISFLIAPLINSAGRMDDASVSYKFLHTKDLNKAMHYLEQIISFNES 292

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E++  ++       ++ S ++V G+ WH G++G++A+RL + F +PSF  S
Sbjct: 293 RKDEEKQLFEESLRQI------DEKQSCVIVGGEEWHEGVLGIVASRLAKHFKKPSFVFS 346

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
                K  GS RS+   DI  ++S A     L   GGH  AAGL++E  ++    +  QK
Sbjct: 347 -INKDKLKGSARSVGKIDILNLISKANPY--LKNYGGHKGAAGLSLELKDYENFKNLIQK 403

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               ++         ++ GVL  S ++  ++++LES  P+G  NP P F   N K+++ +
Sbjct: 404 E-SALIDKEEFLDTEEVLGVLEPSEIDFEMLEILESFEPFGYKNPRPYFVLENLKVKNKK 462

Query: 523 VVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++    +D++T++A+ F     P  E       + +++ G +  N +RG  
Sbjct: 463 LLGKEKKHLKLILV-KDNKTIEALFFNFDKEPNLE-------ESINLVGIISKNEFRGLV 514

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 515 TPQFIIQEL 523


>gi|261855024|ref|YP_003262307.1| single-stranded-DNA-specific exonuclease RecJ [Halothiobacillus
           neapolitanus c2]
 gi|261835493|gb|ACX95260.1| single-stranded-DNA-specific exonuclease RecJ [Halothiobacillus
           neapolitanus c2]
          Length = 597

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 159/598 (26%), Positives = 258/598 (43%), Gaps = 45/598 (7%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
           +    Q  I  A++     +I   +A +LVNR +        +NP +  L+P P  +   
Sbjct: 11  IQRRQQPQIPEAMS-----SIDSRLAAILVNRGIVHP---RQINPDLEFLLP-PADMPGI 61

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137
           D AA  +  A+  + +I+I GD+D DGA + AL +R L           +PDR   GYG 
Sbjct: 62  DVAADILADAVRENARILIIGDFDADGATATALCVRALRAMGAKQVEYTLPDRQRHGYGL 121

Query: 138 NPSLMEKF---INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +P+L++ +    +    +I+TVD G  ++  +  A      VI+ DHH       PA+A+
Sbjct: 122 SPALLKDWIAEADAPPDIILTVDNGIAAFAGVAAALTLNATVIITDHHLPGDTLPPAHAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVC 251
           VNPN          +   GV F V+  +   L   +         +L   LDLVA+ TV 
Sbjct: 182 VNPNLNGSDFASKAIAGVGVAFYVMAALRERLSAQDWFAGGIARPNLARWLDLVAVGTVA 241

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGN-PGLKALIERVNISSPITAE-NLGYMIGPSINAGG 309
           DVV L   NR  V +GL   + Q   PG+ AL           +  +LG+++GP +NA G
Sbjct: 242 DVVSLDDNNRRLVAQGLARIQAQQCVPGISALFAVAGKDPRYASSTDLGFVVGPRLNAAG 301

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK------VLTQCD 363
           R+ +  +G   L++DD       AM L+ +N  RR +E  ML   + +           D
Sbjct: 302 RLEDMRIGVDCLLADDPISARQYAMTLNEINHERRALEQEMLFSLKKQGKSSGLNELDLD 361

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----KGIGSGRSIEGF 419
                +  V+  D +H G++G++A RLKE++ RP F  + E +     K   SGRSI G 
Sbjct: 362 RPIDPADWVIFDDSFHQGVIGIVAGRLKERWQRPVFVFAPENNDAPRAKLKASGRSIPGV 421

Query: 420 DIGK--MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
            +    +        ++   GGHAMAAGL++           F +             + 
Sbjct: 422 HLRDVLVSMATTAPDLMHAFGGHAMAAGLSLSFDQLDTFRRLFAREMAKHRLHFPDQAIV 481

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537
             DG L+A+ + +     L++  P+G   P P+F      L+   +    H ++      
Sbjct: 482 HTDGPLSANELTLDFAQQLQTCTPWGTDCPEPIFDNRFEVLERTPLKEGRHWRLRLRLLK 541

Query: 538 --------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                      L A+ F +             GK  H+   + +N +RG +  QL ++
Sbjct: 542 TEPATPTIGADLTAVWFGIGDH-------IPAGKYWHLAYRIDINRFRGQQTLQLMIV 592


>gi|303239691|ref|ZP_07326216.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio
           cellulolyticus CD2]
 gi|302592862|gb|EFL62585.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio
           cellulolyticus CD2]
          Length = 763

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 169/571 (29%), Positives = 275/571 (48%), Gaps = 37/571 (6%)

Query: 26  GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP-SIRLLMPDPL-------ILTD 77
            +     I +     ++VAR+  NR           NP +IR ++ D           T+
Sbjct: 11  DVQIPKEIIEATDGDELVARIFYNRGYK--------NPLTIRQMLKDEFYTPTDVNEFTN 62

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             KA  RI+ A    EKI ++GDYDVDG  S   ++  LS        ++PDR  +GYG 
Sbjct: 63  IKKAVDRILNAADRDEKICVYGDYDVDGVTSTVTLVECLSLFIDKVVYHVPDRFTEGYGM 122

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N  ++EK   EG  L+IT DCG ++ + ++ A   G+DVI+ DHH + SE   A  ++NP
Sbjct: 123 NIEVIEKLAGEGVSLVITCDCGISNINEIKRAKELGMDVILTDHHNIPSELPNADVILNP 182

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
             L++     +L    + F + + + +    + K          LD++AL+ + DVV L 
Sbjct: 183 KLLEEGHKARNLSGCAMAFFLCLALLKHKGMEEKA------EDYLDMLALSLIADVVSLN 236

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNL 316
           G NR  + K L         GL  L+   + +S + T EN+ + I P INA GR+  + L
Sbjct: 237 GENRYLLKKALPKLFNTKREGLIKLLGIASKTSELSTEENIAFQIAPRINAAGRMESARL 296

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL+  D    + +A K+D LN  R+ ++  +++QA  +V T+    +  +V+V+  D
Sbjct: 297 PVELLLCKDPYMADEMAQKIDFLNTERKRVQQEIIDQAIEQVETKK---KNKTVLVLYND 353

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG-SGRSIEGFDIGKMVSFAVEEGILV 435
            WH GI+G+ A R+ E + +P+  +S +EDGK +  S RS++  +I +++    E   L+
Sbjct: 354 FWHHGIIGIAAGRICELYRKPAILLSLKEDGKTVVGSARSVDDINIYELIKECSER--LL 411

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
           K GGH+ AAGL++ + +        +  A        T     ID  L    V   L D 
Sbjct: 412 KFGGHSQAAGLSLLKDDLQGFVGEIELLAEKKHFINETIK-VDIDMELEVDNVTDELYDR 470

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           L+ AGPYG G   P+F     K+ S R     H  M  E +++  + A+ +   G  L  
Sbjct: 471 LQLAGPYGEGFEAPMFVSYGLKVLSDRKTEKNHHIMVLEGKNNTRISAVKWFGSGKSL-- 528

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
                +GK   +T  +  N ++G+   QL +
Sbjct: 529 -----QGKVFDLTYKISKNTYKGNSSIQLTL 554


>gi|328955205|ref|YP_004372538.1| exonuclease RecJ [Coriobacterium glomerans PW2]
 gi|328455529|gb|AEB06723.1| exonuclease RecJ [Coriobacterium glomerans PW2]
          Length = 1107

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 165/584 (28%), Positives = 256/584 (43%), Gaps = 25/584 (4%)

Query: 11  CSISG-FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLL 68
            S+ G  RW  + G      A  + ++  +  +VAR++V R +S    AK FL PS+   
Sbjct: 2   ASLEGCRRWTMVSG--DRRSAGLLAEELGVAPLVARIMVARGISSVRAAKRFLEPSLDRD 59

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
             DPL +     A+ R+ +AI   E I IFGD+DVDG  S  L+   L         +IP
Sbjct: 60  WGDPLAIPGMADASMRLARAIEEHESIAIFGDFDVDGITSTCLLTEGLRALGARVQPFIP 119

Query: 129 DRIVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           +R  +GYG   + +E+ I      LI+TVD G  +   + Y   +GID++V DHH+    
Sbjct: 120 NRFGEGYGITETALERVIRACAPSLIVTVDNGIAAGAEVDYLCERGIDLVVTDHHEPGES 179

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                 +V+P  L+       L  AGV   ++  +       +          L DL AL
Sbjct: 180 VPQGVPVVDPK-LEASGCSHELAGAGVALKLVQALGDRSGAPDLW------RGLTDLAAL 232

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306
            TV D++ L   NRA V  G+   R    P   AL     +  S +TAE L + + P +N
Sbjct: 233 GTVSDMMELTPENRALVADGIARVRDSSRPAFSALASLAGVDLSAMTAEALSFSLIPRLN 292

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+ +  L   LL+  D  E    A +L+ +N  RR +E+ + E A A V        
Sbjct: 293 AAGRLADPALALDLLLEWDPVEAGRRAAELEKINTRRRELEAELAEDALALV---GRASC 349

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
              VIV   + WH G+ G++A+RL  +F  P    S  E G   GSGRS+   ++   +S
Sbjct: 350 IGRVIVAGKEGWHEGVKGIVASRLVNRFHVPVVLFS-IEGGIARGSGRSVGSVNLFDAMS 408

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                 +L++ GGHA A G T++      L +   +     +PA       +I   +  S
Sbjct: 409 RC--ADLLIRFGGHAGAVGATLDAARLPDLRERLAEILDE-LPAEAFEDRAEIATEVALS 465

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIA 545
            +++  +  +    P+G GN  P+ A     +     V  +   M F + D   T+ AI 
Sbjct: 466 ELDVKTVAQISVLEPFGRGNAAPLLAARGVTMIDRAGVGRSADHMRFRATDGIATVPAIM 525

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           FR          + +    + +        WRG  + +L V D 
Sbjct: 526 FRAPDVQ----ELCACESAVDLVFQAIAERWRGQVKTKLLVKDI 565


>gi|118602650|ref|YP_903865.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567589|gb|ABL02394.1| exonuclease RecJ [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 573

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 151/569 (26%), Positives = 255/569 (44%), Gaps = 34/569 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            IP  + ++   R ++    +  L+ ++  L+    +    D A   + QA+ N ++I+I
Sbjct: 17  DIPTFLKKIYAARGIN----ESHLSLNLIHLLKPNFL--QLDVALVLLEQALLNQKRILI 70

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155
            GD+D DGA +  + ++ L        +  +P+R   GYG +  +++  I  +   LIIT
Sbjct: 71  VGDFDCDGATASVVAVKSLRMMGAKFVDFLVPNRFEHGYGLSEEIVKLAIQEKQPDLIIT 130

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VD G +S+D ++ A +  I VI+ DHH        A  ++NPN         +L   GV 
Sbjct: 131 VDNGISSFDGVKLAKSSNIQVIITDHHLPSKTLPQADIIINPNLKGCEFLSKNLAGVGVC 190

Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           F +       L + N          DL ++LDLVAL TV DVV L   NR  V +G+   
Sbjct: 191 FYLFSAFKTHLIKCNYFTNYKITPPDLRNMLDLVALGTVADVVKLDQNNRILVNQGVKRI 250

Query: 272 RRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           +++         L      S+ + A +LG+ + P +NA GR+ + + G + L+++D  + 
Sbjct: 251 QQKKCAPGILALLEISNRPSATLRASDLGFSVAPRLNAAGRLNDISRGIKCLLTEDINDA 310

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI------QQASVIVVEGDRWHPGIV 383
              A +L+  NQ R+  ++ M +QA+A V  Q   I           I +    WH GI+
Sbjct: 311 RRYAQELEAFNQQRKQEQARMQDQAQAIVDAQELSITQENMSSDRFAISLFDPSWHEGII 370

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHA 441
           G++A +LKE +  P    +  +     GS RSI    I  ++     +    ++K GGHA
Sbjct: 371 GIVAGKLKEDYHCPVAIFAQSDSDL-KGSIRSIPSVHIKDLLDLLDRQNPDLILKFGGHA 429

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
           MAAGL+++  NF      F+      +   +       DG L A  +++    +L  AGP
Sbjct: 430 MAAGLSIKPENFTDFKQAFENVIQTHLDNRMPKVELLTDGELEAFDLSLDNAQLLVDAGP 489

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560
           +G G   P+F     ++   ++V       +     +++   AIAF        + L   
Sbjct: 490 WGQGFDEPIFYGE-FEIIEQKIVGEKHLKFLLKLKGNTQVFDAIAFFQPPLLSMQAL--- 545

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                 V   L +N WRGS   QL +   
Sbjct: 546 ------VAYKLSINSWRGSISLQLMIEQI 568


>gi|149921274|ref|ZP_01909730.1| single-stranded-DNA-specific exonuclease RecJ [Plesiocystis
           pacifica SIR-1]
 gi|149817934|gb|EDM77396.1| single-stranded-DNA-specific exonuclease RecJ [Plesiocystis
           pacifica SIR-1]
          Length = 602

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 168/578 (29%), Positives = 276/578 (47%), Gaps = 26/578 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW     +E         +   +  IV  +++ R++   +  ++FL+P +R L   P  +
Sbjct: 38  RWTRSEREER-------AEALDVHPIVVELMLGRDLEALEAQREFLSPRLREL-SRPTQM 89

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +A   +V A     ++ +FGDYDVDG  +  ++  FL    V     +  R   GY
Sbjct: 90  AGYAEAVELLVDAQQRKLRVGMFGDYDVDGVTTTTILTTFLECLGVEIVAKVASR-EGGY 148

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G      +        +++T DCG++ ++AL +   +GI  +VIDHHQV     PA AL+
Sbjct: 149 GFGVDAAKALQESRVDMVLTGDCGTSDHEALAWLEAKGIPSVVIDHHQVPETMPPATALL 208

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVCDV 253
           NP++         LC+AGV F +   +   L  +         D  + LDLVAL TVCD+
Sbjct: 209 NPHQDGCGFPFKGLCSAGVGFYLAAGVRSKLAAKSPGSRKSLPDPRAWLDLVALGTVCDM 268

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRI 311
           +PL+G NR  V  GL V  ++  PG++ L++R  +     I   +LG+ +GP +NA GR+
Sbjct: 269 MPLVGDNRILVRHGLEVMDQRRRPGVRELLKRARVDPRTHIDEGHLGFGLGPRLNAPGRL 328

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G +     LL +  S E E L  ++++ N+ RR M+  ++ +A A +        +   I
Sbjct: 329 GSAEPSLDLLRARSSAEAEALGARVEMFNERRRDMQQRIVAEAMALLAAD-PASPRRRGI 387

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           VV  + W PGIVG+ AA + E++ RP+  I      G+  GS R+  G D+   ++    
Sbjct: 388 VVAREAWAPGIVGIAAAGIVERYQRPTLVIGIDPGSGEARGSARTAGGVDVRAALAEC-- 445

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITTPVFKIDGVLNASAVN 489
             +L + GGH  AAG+++   N   L + F       +       P+   DG L    ++
Sbjct: 446 RHLLRRFGGHKAAAGVSMPADNIDALKEAFDAACAEQMGEEADREPIDFHDGELALDDID 505

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549
           + LI  +ES GP+G G   P +     ++  I+V+  +HL +T +   +    AIAFR  
Sbjct: 506 LRLISHIESLGPFGVGFARPRYLCAGAEVVRIKVLKGSHLALTLKQGKAHR-DAIAFRKG 564

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                  L  ++G R+ +      N +RG  R QL V 
Sbjct: 565 N------LPIAKGDRVGLLYTPERNSYRGHDRAQLIVE 596


>gi|124025745|ref|YP_001014861.1| DHH domain-containing protein [Prochlorococcus marinus str. NATL1A]
 gi|123960813|gb|ABM75596.1| DHH family:DHHA1 domain:Single-stranded-DNA-specific exonuclease
           [Prochlorococcus marinus str. NATL1A]
          Length = 629

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 147/577 (25%), Positives = 276/577 (47%), Gaps = 29/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL-I 74
           RW+        +    I     +   +  VL+ R +   +   +++ PS    +P+P   
Sbjct: 10  RWIL-PKPINEDDITNI----NLNHTLQAVLIRRGIDLNNEFDEYITPS---DLPNPEEH 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             +  KA +RI+ A    EKI I GDYD DG  S  L++  LS        +IP R  +G
Sbjct: 62  FDELSKATQRIINACLKKEKIAICGDYDADGITSTVLLVELLSILGAIVKPFIPSRQDEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N +++    N+G +L+ITVD G +++ A++ + + GID+I+ DHH++  +++  ++L
Sbjct: 122 YGLNENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKLNIFSL 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P +    S   +L   G+ +L+   I   +  D                 + T+ D+ 
Sbjct: 182 IHPEKTPINSPYKYLAGVGIAYLLAKNICEKIDYDINNSTAN------IFFCIGTIADMA 235

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR ++ + L       N G+K+++++++  +  IT++++G+ I P INA GRIG+
Sbjct: 236 PLKGANRKWLKECLPKINSTTNKGIKSIMKKLSIHNVDITSDDIGFKIAPLINAVGRIGD 295

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            NL   L  +  +  +  L      +N+ R+ + S + ++A    +++         +V+
Sbjct: 296 PNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYRS--DRKFLVL 353

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WHPGI+G++AAR+ EKF  P+  ++   DG   GS RS     + + ++    + +
Sbjct: 354 TKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVNQALAEC--DDL 411

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH+ AAG +++  N  +L +   + A+     +        D  ++   +N    
Sbjct: 412 LIAHGGHSAAAGFSIKNENIDKLREKLDQIANREFKDINLYKSITPDAFISFDQINYNFY 471

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             L   GP+G  NP P+F     K+  I  +   HL+MT  +  + T++AI +       
Sbjct: 472 RQLTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTL-NDGTSTIEAIKWNGSTELK 530

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            + L       + +  ++ +N W+     QL +LD  
Sbjct: 531 KQDL-------IDIAFYIEINRWKKLNTLQLNILDIK 560


>gi|284044640|ref|YP_003394980.1| single-stranded-DNA-specific exonuclease RecJ [Conexibacter woesei
           DSM 14684]
 gi|283948861|gb|ADB51605.1| single-stranded-DNA-specific exonuclease RecJ [Conexibacter woesei
           DSM 14684]
          Length = 846

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 177/584 (30%), Positives = 273/584 (46%), Gaps = 26/584 (4%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74
           G R    L         A+         +A+VLV R  +   A             DP  
Sbjct: 3   GRR--IELAPCDPAAVEALRAALGCSRTLAQVLVRRGHADPAAAR--AFLAATDAHDPGE 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
               D A   I+  +    +I + GDYDVDG  S A+++R L     +A+ ++P RI DG
Sbjct: 59  FGGIDVAVETILGHVRAGTRITVHGDYDVDGVCSTAILLRALRQLGADADWFLPSRIDDG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG   + +E+    G +L+ITVDC  T+ + +  A   GIDV+V DHHQ +++     A 
Sbjct: 119 YGLAATTVERLAARGTRLLITVDCAITAVEEVAAARAAGIDVVVTDHHQPRADGRLPDAP 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +    +        LCA GV + +   ++R    D            LDLVALATV D+V
Sbjct: 179 IVHPSI-SGYPFPDLCAGGVAYKLAQALHRAAGGDPARA-----DDDLDLVALATVADLV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
           PL G NR  V +GL        PGL+AL+    +    + A  +GY + P INA GR+  
Sbjct: 233 PLRGENRRLVREGLRALASTAKPGLRALMRVARVDPSGLDAGAVGYRLAPRINAAGRLYR 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           ++ G  LL++DD      +A +LD  N  RR+ E  +L +AE +V     ++ +    V+
Sbjct: 293 ADAGVELLLTDDEARATAIADELDAANAERRMTEQRILWEAEEQV----RELGERPAYVL 348

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
            G+ WHPG++G++A+R+ E+  RP+  I+   + G G GSGRSI  FD+   +  A    
Sbjct: 349 AGEGWHPGVIGIVASRIVERTNRPALLIALDPDTGSGTGSGRSIRAFDLLGALHAA--AP 406

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH  AAGLT+      +L + F+  A +++      PV ++D ++   A+ + L
Sbjct: 407 LLERYGGHRAAAGLTIAAGRVAQLREAFEAHAASVLSPEDLVPVERVDALVGGRALGLEL 466

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
            + L    P G GNP P    P   L  +R +     H + + E+      +A+AF   G
Sbjct: 467 AEELARLEPCGMGNPRPNLLVPAAHLVDVRPMGQEGRHARFSVEA-GGTRCRAVAFSCDG 525

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                 L          T  L  N W G+   +L +  A+P   
Sbjct: 526 R-----LPVDEQTPADATFRLERNEWNGAVEPRLLLRHATPSTP 564


>gi|291543766|emb|CBL16875.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus sp.
           18P13]
          Length = 677

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 174/576 (30%), Positives = 274/576 (47%), Gaps = 27/576 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
            +W     +     A A+T+   +  + A VL  R + ++  A DFL       + DP +
Sbjct: 2   KKWSI--TRPDEAAAGALTKGSDLEPLCAVVLAARGIRTVQAAADFLG---SDELSDPFL 56

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  +AA  I +A+ + + I ++GDYD DG  +  ++  +L     +   YIP+R  +G
Sbjct: 57  IRDMQEAAEVINEAVESGKPICVYGDYDCDGVTATVMLYSYLECLGADVRFYIPER-SEG 115

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + + +   EG  LIITVD G  +    +     G+ ++V DHHQ       A A+
Sbjct: 116 YGMNEASIRQLAQEGVSLIITVDNGIAALAEAELIAQLGMTLVVTDHHQPGECLPRAAAV 175

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP+R D  S   +LC AGV   ++  +       +    +  L    DL A+ TV D+V
Sbjct: 176 VNPHRADCPSPYKNLCGAGVALKLIAAL-------DGGGYDMALEQFGDLAAIGTVADIV 228

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313
           PL G NR  V +GL   +     GL ALI+   ++      + +G+M+ P INA GR G 
Sbjct: 229 PLDGENRFLVRRGLEYLQNTEREGLLALIQVAGLAEKPLDAHSIGFMLAPRINAAGRFGS 288

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L  RLL+ DD QE E LA +LD LN  R+  E+A+++Q + K+  +   +  A V+V+
Sbjct: 289 PTLAVRLLLCDDPQEAESLAAQLDQLNTERKAAENAIMQQIDQKLREE-PALLHARVLVL 347

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G+ WHPG++G+LAARL E+FG+P F +S  E     GS RS   F + + +  A   G+
Sbjct: 348 AGEGWHPGVIGILAARLVERFGKPCFLLS-VEGDTARGSARSFGDFSVYQCLHAA--SGV 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L   GGH  A G+T+   +        Q++A    P +    +     +L  +       
Sbjct: 405 LTHWGGHKGAGGMTLSAADLPEFDRLVQQYAREQFPVMPVPELSA--LLLPPALYTPKQA 462

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
             LE   P+GA NP P+FA     +  +    N  H ++T    D   + A  F      
Sbjct: 463 AGLEVLAPFGAENPEPLFAVVGASVTGVTSTKNGQHSRITLRYGD-VNISAFWFFCK--- 518

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
             + L   +G    +   +  + W G    + R+ D
Sbjct: 519 -PDALPFRQGDACDLLLTIQADSWNGKPCIRARIRD 553


>gi|94264313|ref|ZP_01288106.1| RecJ exonuclease [delta proteobacterium MLMS-1]
 gi|93455279|gb|EAT05489.1| RecJ exonuclease [delta proteobacterium MLMS-1]
          Length = 569

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 170/573 (29%), Positives = 265/573 (46%), Gaps = 22/573 (3%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82
                    +     IP+ +  VL  R +        FLNPS+  L PDP +L     A+
Sbjct: 8   NAPPASRGRLAASCNIPESLVAVLWRRGLRDPAALDAFLNPSLADL-PDPDLLKGMAPAS 66

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
           R +   +     I+I+ DYD DG  + AL+  +L        +  IP R+ DGYG +P L
Sbjct: 67  RLLADWLAKGAPIVIYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRDGYGLHPHL 126

Query: 142 MEK--FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
           +       +   L+ITVDCG T  +A+  AT  G  VI+ DHHQ   E   A A++NP++
Sbjct: 127 LASVPVAAQRQPLLITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAAAAVLNPHQ 186

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLI 257
                   +L   GV F +L+ + R L +           L   LDLVAL TV D+V + 
Sbjct: 187 AGCSFPCPNLAGVGVAFYLLMGLRRRLVEQGSHRAAELPRLKDFLDLVALGTVADMVKVT 246

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G NR  +  GL V +    PG  AL     I+    AE++ + + P +NA GRIGE  + 
Sbjct: 247 GANRILIRAGLEVLQGNQRPGPAALAAVAGITPG-YAEDISFSLAPRLNAAGRIGEPEIA 305

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
            +LLI DD  +   LA +LD LN+ RR M   + +     + +   D+Q   +I+   ++
Sbjct: 306 FKLLICDDPGQAAALAGELDELNRQRRAMSDKIYQDVRQTISSNIADLQN--IILFAHEQ 363

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
           WHPG++G+ A RL  ++ RP+   +    G   GSGRS+ G D+   V+   E  +L   
Sbjct: 364 WHPGVLGIAATRLALEYDRPAILCALTN-GVAKGSGRSVAGLDLLAAVAGCRE--LLAGY 420

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP-VFKIDGVLNASAVNIALIDML 496
           GGHA A G+++ +    +  +   +   + +P          +D      A+        
Sbjct: 421 GGHAAALGVSMPKEVVAQFRERLNQQLISELPRARQERGEVDVDWFFADGAMEPGFTAAY 480

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           +   P+G GNP P F     ++    VV   HL+ +++  D ++  AIAF          
Sbjct: 481 QRLAPFGPGNPEPQFRIRG-RVGKATVVGSKHLRFSWQQAD-QSYNAIAFGRAD-----A 533

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           L  + G  +  T  L  N+++G    QL+V + 
Sbjct: 534 LPLTSG-VVEFTFTLRRNFYQGRSSWQLKVSEL 565


>gi|299783058|gb|ADJ41056.1| Single-strand DNA-specific exonuclease [Lactobacillus fermentum
           CECT 5716]
          Length = 513

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 157/524 (29%), Positives = 245/524 (46%), Gaps = 25/524 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W              +     +P  +A +LVN+ + S D A+ +LNP    L   P
Sbjct: 4   SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             L D D+A  RI+ A+   EKI ++GDYD DG  +  LM   L       + Y+PDR  
Sbjct: 62  DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYGPN ++ ++ I  G QLI+TVD G     A++YA  QG+DV++ DHH +  +  PA 
Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P           L   GV F V   +                + +LDLVA+  + D
Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311
           +V L G N A V  GL   R+   PGL AL++   +    +T  ++G+ + P +NA GRI
Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            ++  G  LL + D +E E LA ++D  N+ R+ +   + ++A A    Q     Q   +
Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G  WH G++G++AA + +  G+P+   S  E +    GSGRS++G D+    +    
Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDL--FAALDQH 403

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
             ++   GGHAMA G++ E      L     +            P  KI   L    +  
Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTK 463

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMT 532
            L   ++   P+G GN  P          + +V+     HL++ 
Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLK 507


>gi|15837712|ref|NP_298400.1| single-stranded DNA exonuclease [Xylella fastidiosa 9a5c]
 gi|9106065|gb|AAF83920.1|AE003946_11 single-stranded DNA exonuclease [Xylella fastidiosa 9a5c]
          Length = 581

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 175/577 (30%), Positives = 270/577 (46%), Gaps = 39/577 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + RV   R  +         P +  L+  P  L++   A   + Q I  + +I++ GD+D
Sbjct: 2   LRRVYTARGCADPVTAQ---PCLAQLL-SPATLSNIQAATVLLTQVIKANGRILVVGDFD 57

Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
            DGA + A+ +R L      N    +P+R+V GYG + +L+E+       L++TVD G  
Sbjct: 58  CDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTVDHGIA 117

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
            +  +  A  +G  V+V DHH       PA  +VNPN   DL     L   GV+F VL+ 
Sbjct: 118 CHAGVAAAKARGWQVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIFYVLLA 177

Query: 222 IYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
           +   L                +        DL SLLDLVA+ TV D+VPL   NRA V  
Sbjct: 178 LRARLYPVAHAEYEGQETLIHRSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNRALVAA 237

Query: 267 GLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324
           GL   RR QG  GL+ALIE        +TA ++G+ + P +NA GR+ +  LG  LL+++
Sbjct: 238 GLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIELLLTE 297

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGDRWHPG 381
           D      +A  L+ +N  RR+++  M + AE    + + Q   +   +V  +    WHPG
Sbjct: 298 DWTRARAIAAMLEEMNAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDPDWHPG 356

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEGILVKG 437
           ++GL+A+++K+K  RP  A++  E G  +  GS RSI G  I  +++       G++ K 
Sbjct: 357 VIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLAALDSGYPGMIQKF 416

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHAMAAGLT++          F+     +V   +       DG L A  ++      L 
Sbjct: 417 GGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALHARALR 476

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEF 556
             GP+G G P P+F     ++   RV+   HL+M        + L AI F  +       
Sbjct: 477 LGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRHSGRHDALNAIYFNGWQGD---- 531

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                 +R+ +   L  + +RG    QL V  A  +E
Sbjct: 532 ---PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 565


>gi|283850471|ref|ZP_06367759.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp.
           FW1012B]
 gi|283574042|gb|EFC22014.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp.
           FW1012B]
          Length = 565

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 175/579 (30%), Positives = 274/579 (47%), Gaps = 23/579 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74
            +W+          A A+ +   +   +A +L +R ++   A D +L P +RLLM  P  
Sbjct: 3   KKWIFPSQGVSAATADALAEALGLSPAIAALLYHRGLTTAEAMDAYLCPGLRLLMR-PDE 61

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   + AA  + +A+     + ++GDYDVDG    AL++ FL     +    +P+R  +G
Sbjct: 62  IPGMEAAAALLAEALVAGRTVAVWGDYDVDGITGTALLVDFLRERGFSPLWRLPERAAEG 121

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N + +E+   +GA L++TVDCG      +  A   G+DVIV DHH    E  PA A+
Sbjct: 122 YGLNIAGIEELARDGASLLVTVDCGIGGIAEVARARELGLDVIVTDHHLPGPELPPANAV 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            NP           L   GV F +   + R+L  +       D+  LLDLVAL T+ DVV
Sbjct: 182 ANPKLGPGPGT--DLAGVGVAFFLAAAVNRLLPGEPT-----DVRRLLDLVALGTLADVV 234

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIG 312
           PL G NR     GL++      PG+ AL E    +    + A  + + + P INA GR+G
Sbjct: 235 PLCGPNRILAKNGLLLLAEARRPGIHALKEASGHNPKAALGASQVTFGLAPRINAAGRMG 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             +    LL++ D      LA +LD  N  RR  E A+L +A  +      +      + 
Sbjct: 295 RPDAALALLLAPDLDTARPLAAELDAENTRRRAEEDAILAEAMDQA----AERPGRFGLT 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +    WH G++G++A+R+ E+  RP+  ++ +E  G   GSGRSI   D+  +++     
Sbjct: 351 LFAPHWHQGVIGIVASRVAERRYRPTLILTADEAKGLLKGSGRSIPECDLHGLLTE--IG 408

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH MAAGL++   N   L + F   A   +  +   P  K+D  L+  AV  A
Sbjct: 409 EVLNTFGGHKMAAGLSIVPDNLSLLAERFDAAAAKALGPVAPLPSLKLDAELSFGAVTAA 468

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYG 550
           L+  +    P+G GNP PVFA P  K+ S R     H+ ++        TL+  A+R+  
Sbjct: 469 LVREIGLMEPFGCGNPEPVFASPPVKVLSRRGFGDNHVALSLRDPAAGVTLRGKAWRMA- 527

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               +      G  + V     + Y+ G    +LR+ D 
Sbjct: 528 ---SDIRESLAGATVRVAFTPKITYFSGVPEIELRLRDI 563


>gi|72382197|ref|YP_291552.1| exonuclease RecJ [Prochlorococcus marinus str. NATL2A]
 gi|72002047|gb|AAZ57849.1| exonuclease RecJ [Prochlorococcus marinus str. NATL2A]
          Length = 622

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 145/577 (25%), Positives = 276/577 (47%), Gaps = 29/577 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL-I 74
           RW+             I     +   +  VL+ R +   +   +++ PS    +P+P   
Sbjct: 3   RWIL-PKPINEAEITNI----NLNHTLQAVLIRRGIDLNNEFDEYITPS---DLPNPEEH 54

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             +  KA +RI++A    E I I GDYD DG  S  L++  LS        +IP R  +G
Sbjct: 55  FDELSKATQRIIKACLQKENIAICGDYDADGITSTVLLVELLSILGAIVKPFIPSRQDEG 114

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N +++    N+G +L+ITVD G +++ A++ + + GID+I+ DHH++  +++  ++L
Sbjct: 115 YGLNENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKLNIFSL 174

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P +    S   +L   G+ +L+   I   +  D  +              + T+ D+ 
Sbjct: 175 IHPEKTPINSPYKYLAGVGIAYLLAKNICEKIDYDINISTAN------IFFCIGTIADMA 228

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL G NR ++ + L       N G+K+++++++  +  IT++++G+ I P INA GRIG+
Sbjct: 229 PLKGANRKWLKECLPKINSTTNKGIKSIMKKLSIHNVDITSDDIGFKIAPLINAVGRIGD 288

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            NL   L  +  +  +  L      +N+ R+ + S + ++A    +++         +V+
Sbjct: 289 PNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYR--CDRKFLVL 346

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               WHPGI+G++AAR+ EKF  P+  ++   DG   GS RS     + + ++    + +
Sbjct: 347 TKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVNQALAEC--DDL 404

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L+  GGH+ AAG +++  N  +L +   + A+     +        D  ++   +N    
Sbjct: 405 LIAHGGHSAAAGFSIKSENIDKLREKLNQIANREFKDINLYKSITPDAFISFDQINYNFY 464

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
             L   GP+G  NP P+F     K+  I  +   HL+MT  +  + T++AI +       
Sbjct: 465 RELTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTL-NDGTSTIEAIKWNGS---- 519

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              +   +   + +  ++ +N W+     QL +LD  
Sbjct: 520 ---IELKKQDLIDIAFYIEINRWKKLNTLQLNILDIK 553


>gi|296135374|ref|YP_003642616.1| single-stranded-DNA-specific exonuclease RecJ [Thiomonas intermedia
           K12]
 gi|295795496|gb|ADG30286.1| single-stranded-DNA-specific exonuclease RecJ [Thiomonas intermedia
           K12]
          Length = 574

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 163/583 (27%), Positives = 258/583 (44%), Gaps = 32/583 (5%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
           Q        + Q      ++A++   R V      +         +  P +L   + AA 
Sbjct: 7   QPDPRAQHRL-QAAGTHPLLAQLFAARGVKEADELE----LALPHLLPPALLKGAETAAV 61

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
            +  AI   E+++I  DYD DGA + A+ +R L       +  +P+R   GYG +P++++
Sbjct: 62  VLADAIARGERLLIVADYDCDGATACAVGLRGLRAMGAAVSYLVPNRFTTGYGLSPAVVD 121

Query: 144 ---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
              K  +     I+TVD G  S + +  A  QGI V+V DHH        A  +VNPN+ 
Sbjct: 122 LALKHADGKPDWIVTVDNGIASVEGVARAREQGIRVLVTDHHLPGDTLPEAEVIVNPNQP 181

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIG 258
                   +   GV+F VL+ +   LRQ           L +LLDLVAL TV DVV L  
Sbjct: 182 GCDFPSKSIAGVGVMFYVLLALRSELRQRGVFDATTQPRLDALLDLVALGTVADVVRLDA 241

Query: 259 LNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            NR  V +GL   R        A  L      ++ + + +LG+ +GP INA GR+ +  +
Sbjct: 242 NNRLLVAQGLKRIRDGRMQPGVAALLQVAGREAARVNSADLGFALGPRINAAGRLADMTV 301

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEG 375
           G   L +DD      LA  LD  N+ RR +E  +  +A A +       +  A  I +  
Sbjct: 302 GIECLATDDPARALQLAQLLDTFNRERRSIEDGIKAEALAMLDGLDLGTEGSAPAISLFA 361

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGI 433
             WH G++G++A R+K++  RP+F  +  EDG   GSGRSI GF +   +      E G+
Sbjct: 362 PNWHEGVIGIVAGRIKDREHRPTFVFAPAEDGTLRGSGRSIPGFHLRDALDLVSKREPGL 421

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHAMAAG ++    F R    F + A   +         ++DG L A  +   + 
Sbjct: 422 LLRFGGHAMAAGCSLVDDGFERFRAAFAQVAAEWLAPAQLQRRIEVDGPLPAQWLLPEMA 481

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE------TLQAIAFR 547
            +L +A  +G G   P+F+    +++  R++   HL+      DSE          +A+ 
Sbjct: 482 SLL-AAQVWGQGFAAPLFSAR-VQVRQQRLLGERHLKAKVRLLDSEGAPGDAQFDLVAWG 539

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                              +   L  N W+G+ + QL +    
Sbjct: 540 RTDF---------LPDEARIAYRLESNTWQGTTQVQLVLEAIE 573


>gi|34763843|ref|ZP_00144751.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886380|gb|EAA23647.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 640

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 164/581 (28%), Positives = 282/581 (48%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D + A +RI +AI N++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DMEVATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A LII+VDCG  S + + +A    +D I+ DHH++  +   A A++N
Sbjct: 114 LNKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKREENIYSFKYLAGVGTAFMLVYALYTKMDKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V +GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 VSDNRKFVKRGLKLLNTTKWTGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L I +D  +   +  KL   N  R+ ++  +LE + A++  +   +   ++I+
Sbjct: 288 DAKQAVSLFIEEDGFKCLSIIDKLLENNVERKDIQKKILEMSIAEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T+E  N         K+        +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIEIENIEEFYQRVDKYIEENFNKDLFVKKLKIEKILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F   
Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    +S          L +  ++     +L++ D  
Sbjct: 524 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 560


>gi|33863033|ref|NP_894593.1| DHH domain-containing protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33634950|emb|CAE20936.1| Single-stranded DNA-specific exonuclease [Prochlorococcus marinus
           str. MIT 9313]
          Length = 632

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 163/548 (29%), Positives = 259/548 (47%), Gaps = 24/548 (4%)

Query: 46  VLVNRNV-SIDYAKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           VLV R V     A   L P      PDP     D  KA  R+  A   +E + I GDYD 
Sbjct: 34  VLVRRGVLDSSTATTILEP---PKPPDPCDHFPDLAKAIVRLQGACQIAESVAICGDYDA 90

Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           DG  S AL+M  L          IP+R  +GYG N  ++ +   +G +LI+TVD G T+ 
Sbjct: 91  DGMTSTALLMVTLKCLGAQPIAAIPNRKSEGYGLNRDMVIRLHEQGIRLIVTVDNGVTAQ 150

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           DALQ A N  ++VI+ DHH +    +    L++P+     S    L   G+ +L+   + 
Sbjct: 151 DALQQAENLSMEVILTDHHTLPDSPLNVLCLLHPSVTPQDSPYRCLAGVGLAYLLASSLA 210

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
             +     +          DL  + TV D+ PL G NRA++ +GL    R    GL+AL 
Sbjct: 211 EAMDCKEAIGPAR------DLFCIGTVADMAPLTGANRAFLREGLNNLHRTRCKGLRALQ 264

Query: 284 ERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
               I   P+ AE++G+ + P INA GR+G+  L  +LL  D+  E   LA + D LN+ 
Sbjct: 265 RLAGIEERPLKAEDIGFQLAPRINAVGRLGDPQLVVKLLTVDNEDEAMTLARQCDQLNRQ 324

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+ + +A+  +A A V  +         +++  + WH G++G++AARL E++ RP+  ++
Sbjct: 325 RKDLCNAIEAEAIALVEAEGA--TPPPFLMLAQNHWHHGVIGIVAARLMERYFRPTALLA 382

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
            E DG+   S R+  GF +   +        L + GGH+ A G T+     G L +   K
Sbjct: 383 GEGDGRLRASVRAPSGFAVNDSLKAC--AVHLDRFGGHSAAGGFTIRAEKVGALHEALNK 440

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
            A N    +        + +L    +N+ L + L+   P+G G+P P+F   N  +    
Sbjct: 441 LASNWHATVGGGVSISPETLLKLHEINLDLWNSLQQLEPFGIGHPAPLFWARNCLVVDQH 500

Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582
            +   HLQ+     D +  +AIA+R+              +R+ V   + +N+W+G  R 
Sbjct: 501 RMRGGHLQLILAQGDCQR-RAIAWRL-------ISEAQVPERIDVAFRINMNHWQGEDRL 552

Query: 583 QLRVLDAS 590
           Q+ V+   
Sbjct: 553 QMEVVALR 560


>gi|113954848|ref|YP_730523.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           CC9311]
 gi|113882199|gb|ABI47157.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           CC9311]
          Length = 631

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 164/545 (30%), Positives = 269/545 (49%), Gaps = 24/545 (4%)

Query: 49  NRNVS-IDYAKDFLNPSIRLLMPDPL-ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGA 106
            R ++        LN S    +P P     + +KA +R+ QA   +E++ I GDYD DG 
Sbjct: 36  RRGLTEPAQVNALLNDSA---LPKPGGHFPELEKAVQRLHQACLKAERVAICGDYDADGM 92

Query: 107 ASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL 166
            S AL++R L          IP R+ DGYG N S++ +  + G +LI+TVD G  +++AL
Sbjct: 93  TSTALLLRTLRTLGAEPQAAIPSRMADGYGLNCSMVNELHDAGVRLIVTVDNGVAAHEAL 152

Query: 167 QYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL 226
             A + G++V++ DHH +      A AL++P    D S    L   G+ ++V   +   +
Sbjct: 153 SRAEDLGMEVVLTDHHTLPKTRPKALALIHPATTPDHSPYRGLAGVGLAYVVARELAERM 212

Query: 227 RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV 286
           RQ         + S  DL  + TV D+ PL G NR  + +GL+   R   PG++AL +  
Sbjct: 213 RQ------PAAIASARDLFCIGTVADMAPLTGANRTLLREGLLHLHRSNCPGVRALQQLA 266

Query: 287 N-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
                P+ A+++G+ + P INA GRIG+  L   LL +DD      L  + D LN+ RR 
Sbjct: 267 GLGDRPLRADDIGFQLAPRINAVGRIGDPQLVVDLLTADDQNSAIELGRQCDSLNRQRRE 326

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
           +  A+  +A A +  + D       +++    WH G++G++AARL ++F RP+  ++ + 
Sbjct: 327 LCDAIEAEALALL--ESDRDPLPPFLLLAQGHWHHGVIGIVAARLMDRFQRPTALLAADG 384

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
           DG    S R+ EGF + K +       +L + GGH  A G TV+     RL +     A 
Sbjct: 385 DGLMRASVRAPEGFAVDKALDHC--TDLLERHGGHPAAGGFTVKAAQVHRLHEELNALAL 442

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525
           + +       + + + +L+ +A+N  L   L S  P+G G+P P+F     K+ S R++ 
Sbjct: 443 SWIQTRGEGILVEPEALLSLTAINHELWSALLSLEPFGIGHPAPLFWSRGCKVTSQRLLR 502

Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
             HL++T    + E  +AIA+R   T       Q     + V   + +N W+G  + QL 
Sbjct: 503 GGHLKLTLVQDNCER-EAIAWRWQQT-------QPLPAIVDVAFRISLNRWQGEAKLQLE 554

Query: 586 VLDAS 590
           +    
Sbjct: 555 IQALR 559


>gi|294339480|emb|CAZ87839.1| Single-stranded-DNA-specific exonuclease recJ [Thiomonas sp. 3As]
          Length = 574

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 160/583 (27%), Positives = 257/583 (44%), Gaps = 32/583 (5%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
           Q        + Q+     ++A++   R V      +         +  P +L   + AA 
Sbjct: 7   QPDPRAQHRL-QEAGTHPLLAQLFAARGVKEADELE----LALPHLLPPALLKGAEAAAV 61

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
            +  AI   E+++I  DYD DGA + A+ +R L       +  +P+R   GYG +P+++E
Sbjct: 62  VLADAIARGERLLIVADYDCDGATACAVGLRGLRAMGAAVSYLVPNRFTTGYGLSPAVVE 121

Query: 144 ---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
              +  +     I+TVD G  S + +  A  QGI V+V DHH        A  +VNPN+ 
Sbjct: 122 LALQHADGKPDWIVTVDNGIASVEGVARAREQGIRVLVTDHHLPGDTLPEAEVIVNPNQP 181

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIG 258
                   +   GV+F VL+ +   LRQ           L +LLDLVAL TV DVV L  
Sbjct: 182 GCDFPSKSIAGVGVMFYVLLALRSELRQRGVFDAASQPRLDALLDLVALGTVADVVRLDA 241

Query: 259 LNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            NR  V +GL   R        A  L      ++ + + +LG+ +GP INA GR+ +  +
Sbjct: 242 NNRLLVAQGLKRIRDGRMQPGVAALLQVAGREAARVNSADLGFALGPRINAAGRLADMTV 301

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEG 375
           G   L +DD      LA  LD  N+ RR +E  +  +A A +       +  A  I +  
Sbjct: 302 GIECLATDDPARALQLAQLLDTFNRERRSIEDGIKAEALAMLEGLDLGAEGSAPAISLFA 361

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGI 433
             WH G++G++A R+K++  RP+F  +  EDG   GSGRSI GF +   +      E G+
Sbjct: 362 PNWHEGVIGIVAGRIKDREHRPTFVFAPAEDGTLRGSGRSIAGFHLRDALDLVSKREPGL 421

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L++ GGHAMAAG ++    F R    F + A   +         ++DG L A  +   + 
Sbjct: 422 LLRFGGHAMAAGCSLVDDGFERFRAAFAQVAAEWLAPAQLQRRIEVDGPLPAQWLLPEMA 481

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE------SQDSETLQAIAFR 547
            +L +A  +G G   P+F+    +++  R++   HL+          +  +     +A+ 
Sbjct: 482 SLL-AAQVWGQGFAAPLFSAR-VQVRQQRLLGERHLKAKVRLLDSEGAPGNAQFDLVAWG 539

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                              +   L  N W+G  + QL +    
Sbjct: 540 RTDF---------LPDEARIAYRLESNTWQGITQVQLVLEAVE 573


>gi|149005720|ref|ZP_01829459.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762660|gb|EDK69620.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP18-BS74]
          Length = 505

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           + +  GGHA AAG+T+E      L    + +               +D  L+  A+++  
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHK 517
           +   E   P+G  N  P+F     +
Sbjct: 468 VKSFERLAPFGMDNQKPIFISRIFR 492


>gi|256028102|ref|ZP_05441936.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D11]
 gi|289766043|ref|ZP_06525421.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D11]
 gi|289717598|gb|EFD81610.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D11]
          Length = 698

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 161/581 (27%), Positives = 281/581 (48%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 1   KWIL-ENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 49

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI +++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 50  DMDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 108

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A L+I+VDCG  S + + +A    +D I+ DHH++  +   A A++N
Sbjct: 109 LNKEAIQTLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 168

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 169 PKRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDVVAIGTVADIVPL 222

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V +GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 223 VSDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 282

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L + +D  +   +  KL   N  R+ ++  +LE +  ++  +   +   ++I+
Sbjct: 283 DAKQAVSLFVEEDGFKCLSIIDKLLENNIERKNIQKKILEMSIVEI--EKKQLYNKNLIL 340

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +       
Sbjct: 341 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNFVS 398

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         K+        +     KI+ VL    VN  
Sbjct: 399 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKVLAPYKVNYE 458

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F   
Sbjct: 459 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLILDIKKDGYYFKNCIFFGGG 518

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    +S          L +  ++     +L++ D  
Sbjct: 519 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 555


>gi|157738457|ref|YP_001491141.1| single-stranded DNA-specific exonuclease [Arcobacter butzleri
           RM4018]
 gi|157700311|gb|ABV68471.1| single-stranded DNA-specific exonuclease [Arcobacter butzleri
           RM4018]
          Length = 522

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 137/548 (25%), Positives = 254/548 (46%), Gaps = 42/548 (7%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L  R+V+           +  + P P    D D A +RI +AI  +E I I GDYDVDG
Sbjct: 12  LLSARHVNNP------YSKLADIPP-PTSFKDIDIATKRIKKAILENETITIVGDYDVDG 64

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S  +M+ F    ++  N  IP+R   GYG +  +++        L+ITVD G ++Y+A
Sbjct: 65  IVSTTIMLDFFKQINIKVNHIIPNRFEHGYGLSTKIVD---LIEKGLVITVDNGISAYEA 121

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
                 + ID+I+ DHH V  +   A A++NP + D       +C A V + +   I + 
Sbjct: 122 SLKLKEKNIDLIITDHHTVGEKIPEALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKKE 181

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           +  +       ++   LDL+ +A + D++P+  LN     +GL   +       K L   
Sbjct: 182 MNLN------VNMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKLKSSSREAFKLLNSI 235

Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
           ++    + ++++G+ I P +N+ GR+ ++ +    L+S+DS         LD LN  R+ 
Sbjct: 236 LS-KESLISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNNYRKT 294

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
           ++  +  +A  K+       +  + I+V  + WH G++G++A++L   + +P+F  + +E
Sbjct: 295 LQEDISNKANLKI------DKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFIFTVQE 348

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
           +    GS R+    ++ +++S A    +L+  GGH  AAGL+++  N         +   
Sbjct: 349 NDIAKGSVRANSNINLYELISKA--SHLLIGFGGHKNAAGLSLKLENIEEFEKIINEELE 406

Query: 466 NIVPALITTPVFKID--GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
           N    L      +ID  G L+ S+V++  + ++E   PYG  N  P+F   N  L    +
Sbjct: 407 NFKDDL----HIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNLVKYDL 462

Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           +     HL++T    +    +AI F      +   L        ++   +  N ++G   
Sbjct: 463 IGRDKNHLKLTL-DSNGVIFEAIKFNDSNKNIPNIL--------NLIVSVAKNEFKGVIT 513

Query: 582 CQLRVLDA 589
            Q  + + 
Sbjct: 514 PQFLIQEI 521


>gi|124023156|ref|YP_001017463.1| serine/threonine specific protein phosphatase [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963442|gb|ABM78198.1| Serine/threonine specific protein phosphatase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 632

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 160/548 (29%), Positives = 261/548 (47%), Gaps = 24/548 (4%)

Query: 46  VLVNRNV-SIDYAKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           VLV R V     A   L P      PDP     D  KA  R+  A   +E + I GDYD 
Sbjct: 34  VLVRRGVLDSSTATTILEP---PKPPDPCDHFPDLAKAIVRLQGACQTAESVAICGDYDA 90

Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           DG  S AL+M  L          IP+R  +GYG N  ++ +   +G +LI+TVD G T+ 
Sbjct: 91  DGMTSTALLMVTLKCLGAQPIAAIPNRKSEGYGLNRDMVIRLHEQGIRLIVTVDNGVTAQ 150

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           +ALQ A N  ++VI+ DHH +    +   +L++P+     S    L   G+ +L+   + 
Sbjct: 151 EALQQAENLSMEVILTDHHTLPDSPLKVLSLLHPSVTPQDSPYRCLAGVGLAYLLASSLA 210

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
             +   + V          DL  + TV D+ PL G NRA++ +GL    R    GL+AL 
Sbjct: 211 EAMDCKDAVGPAR------DLFCIGTVADMAPLTGANRAFLREGLNNLHRTRCKGLRALQ 264

Query: 284 ERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
               I   P+ AE++G+ + P INA GR+G+  L  +LL  D+  E   LA + D LN+ 
Sbjct: 265 RLAGIEERPLKAEDIGFQLAPRINAVGRLGDPQLVVKLLTVDNEDEAMTLARQCDQLNRQ 324

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+ + +A+  +A A V  +         +++  + WH G++G++AARL E++ RP+  ++
Sbjct: 325 RKDLCNAIEAEAIALVEAEGA--TPPPFLMLAQNHWHHGVIGIVAARLMERYFRPTALLA 382

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
            E DG+   S R+  GF +   +        L + GGH+ A G T++    G L +   +
Sbjct: 383 GEGDGRLRASVRAPSGFAVNDALKAC--AVHLDRFGGHSAAGGFTIQAEKVGALHEALNE 440

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
            A +    +        + +L    +N+ L + L+   P+G G+P P+F   N  +    
Sbjct: 441 LASHWHATVGGGVSISPETLLKLHEINLDLWNGLQQLEPFGIGHPAPLFWARNCLVVDEH 500

Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582
            +   HLQ+     D +  +AIA+R               +R+ +   + +N+W+G  R 
Sbjct: 501 RMRGGHLQLILAQGDCQR-RAIAWRW-------ISEAQIPERIDLAFRINMNHWQGEDRL 552

Query: 583 QLRVLDAS 590
           Q+ V+   
Sbjct: 553 QMEVVALR 560


>gi|283953639|ref|ZP_06371170.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794680|gb|EFC33418.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 523

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 150/549 (27%), Positives = 271/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +AI  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDTYKAANRIKEAIEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ K       LIITVD G  +
Sbjct: 62  VDGIISCVVMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINKL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           ++A      + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 FEAAVLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
                      LN+D+   L+L+A+A + D++ L  LNRA V +G+    +      KA+
Sbjct: 179 ------KEVCKLNYDMSKFLELLAIAIIADMMELRDLNRALVRRGIEHINKSKRAAFKAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      +L   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILTLISK--TNSMLSNYGGHKGAAGISLNFENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEILEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + +++ G +  N +RG  
Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNINLLGSISKNEFRGLV 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFVIKEI 522


>gi|237742354|ref|ZP_04572835.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           4_1_13]
 gi|229430002|gb|EEO40214.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           4_1_13]
          Length = 850

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 160/581 (27%), Positives = 281/581 (48%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKTNYKKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI +++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DMDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A L+I+VDCG  S + + +A    +D I+ DHH++  +   A A++N
Sbjct: 114 LNKEAIQTLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V +GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 VSDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L + +D  +   +  KL   N  R+ ++  +LE +  ++  +   +   ++I+
Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNIERKNIQKKILEMSVTEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         K+        +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F   
Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    +S          L +  ++     +L++ D  
Sbjct: 524 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 560


>gi|257452673|ref|ZP_05617972.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           3_1_5R]
 gi|317059213|ref|ZP_07923698.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           3_1_5R]
 gi|313684889|gb|EFS21724.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           3_1_5R]
          Length = 842

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 149/580 (25%), Positives = 278/580 (47%), Gaps = 34/580 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     +K AI  IV  ++  RN+S                 +P +L 
Sbjct: 5   KWIYQNYKYYPQKIE---KKEAIHSIVYSIMKERNLSHQE----------NFNTNPFLLK 51

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D ++A   + +A    + I I+GDYDVDG  SV+L    LS        YIP R  +GYG
Sbjct: 52  DMEEAVSLLQEAKKKKQTIWIYGDYDVDGITSVSLCYLALSELGYEVEYYIPLR-DEGYG 110

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   N+G +++ITVDCG  S   + +A + G+ +IV DHH+++ E   A A++N
Sbjct: 111 LNQEALQSIYNQGGKIVITVDCGIVSSKEVDFANSLGMTMIVTDHHELQGELPKAAAVIN 170

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++     L   G  F ++  ++    +        ++    D+VAL T+ D+VPL
Sbjct: 171 PKRKENIYPFPSLAGVGTAFFLMTALFEKEGKRK------EITKYFDIVALGTIADIVPL 224

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAGGRIGE 313
           I  NR  V +GL +  +    GL+ L++R+         +A ++G++I P  NA GR+ +
Sbjct: 225 IENNRILVQQGLSLLAKSQWTGLRILVKRLFPDYETHHFSAYDVGFIIAPIFNAAGRLED 284

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +    RL +  DS++       L   N +RR ++  +L+    ++  +   ++  + IV+
Sbjct: 285 AKSSVRLFLEKDSKKANEQIDYLIQNNLDRRAVQEKILQACLEEISQK--KLEDKNSIVI 342

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
             + +H G++G++A++L ++F +P+  +  +  +G    S RSI G +I  + S      
Sbjct: 343 AREGFHHGVIGIVASKLVDRFYKPTIIMEIKANEGIATASCRSISGINI--VESLEAVSH 400

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L++ GGH+ AAG ++   N  +  + F+    + +   ITT    I   L    +   L
Sbjct: 401 LLLRYGGHSGAAGFSILIENIAKFYEEFEAILEDKISKEITTRKLNITKELLPFQIQYPL 460

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  ++   P+GA NP P+F+  + KL  IR++     H+       D+     + F+ + 
Sbjct: 461 LHDMKYLEPFGASNPAPIFSLKHCKLDKIRLIGADKKHIMCNIHHGDTIFWNCVWFQAFD 520

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  +    + + V  HL +  +RG  + ++ + D  
Sbjct: 521 IYEELLYI----QEVDVAFHLKLETYRGRYQYKIFIDDIQ 556


>gi|116070602|ref|ZP_01467871.1| RecJ exonuclease [Synechococcus sp. BL107]
 gi|116066007|gb|EAU71764.1| RecJ exonuclease [Synechococcus sp. BL107]
          Length = 599

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 168/546 (30%), Positives = 263/546 (48%), Gaps = 21/546 (3%)

Query: 47  LVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +  R   S++ AK FL P+   L    L   D  KA  R+V+A  N E + I GDYD DG
Sbjct: 1   MRRRGFRSVEEAKQFLIPT--SLPEAELHFPDLKKATNRLVKACQNHETVAICGDYDADG 58

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S AL++R L+         IP R+ +GYG NPS++++   +G Q+++TVD G  +  A
Sbjct: 59  MTSTALLLRALAPLGAAPRAAIPSRMEEGYGLNPSMVDRQHRDGVQILVTVDNGVAASAA 118

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
           LQ A   G++VIV DHH +     P  AL++P    + S    L   G+ +++   +   
Sbjct: 119 LQRAAELGMEVIVTDHHTIPDNPAPMTALIHPATTPNGSPYRGLAGVGLAYVLARAVAEQ 178

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           L Q         + S  DL  + TV D+ PLIG NRA++++GL         GL+AL   
Sbjct: 179 LNQ------PAAICSARDLFCVGTVADMAPLIGANRAWLLEGLGHLHHTECFGLQALQRL 232

Query: 286 VN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRR 344
                +PITAE++G+ + P INA GR+GE  L   LL + +      LA + D  N+ RR
Sbjct: 233 AGLGENPITAEDIGFQLAPRINAVGRLGEPRLVVDLLTASEPSSAMALARRCDDFNRQRR 292

Query: 345 LMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404
            +  A+  +A A V     D Q  S +++    WH G++G++AARL E++ RP+  ++ +
Sbjct: 293 DLCDAIEAEAVALVEADSSD-QLPSFLLLAQSHWHHGVIGIVAARLVERYHRPAALLAGD 351

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
            +G    S RS  GF + + ++      +L + GGH  A G TV   N   L +     A
Sbjct: 352 GEGLMRASVRSPRGFAVDQALNHC--AKLLERFGGHPAAGGFTVRAENVHALHEQLCVQA 409

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
            + +         + D +L    VN  L   L+S  P+G G+  P+F      ++  R +
Sbjct: 410 DSWLTQQGQGLPIQPDALLRLDEVNWDLWKALQSLAPFGIGHEVPLFWSRGCSVEEKRDL 469

Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584
              HL +     ++E  +AIA+R                   V   + +N W+G +R QL
Sbjct: 470 KGGHLALRLRQGETER-RAIAWRWD-------PASHVPDHCDVAYRVSLNRWQGEQRLQL 521

Query: 585 RVLDAS 590
            +    
Sbjct: 522 ELKAIR 527


>gi|323143731|ref|ZP_08078399.1| single-stranded-DNA-specific exonuclease RecJ [Succinatimonas
           hippei YIT 12066]
 gi|322416444|gb|EFY07110.1| single-stranded-DNA-specific exonuclease RecJ [Succinatimonas
           hippei YIT 12066]
          Length = 577

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 174/563 (30%), Positives = 270/563 (47%), Gaps = 27/563 (4%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             I+ +VLV+R V+ D     L+P + LL+     L D  +A+ RI  A+ N E +M+ G
Sbjct: 32  DPILRQVLVSRGVTSDKE---LSPDLALLLHY-RDLKDIKEASERIAAAVINKEIVMVCG 87

Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           DYDVDG    AL +  L    ++     +P R   GYG +  +++K +  G  LIITVD 
Sbjct: 88  DYDVDGITGTALGVLCLKTFGLDKVLFDVPSRYDGGYGLSFKMIDKAVENGVTLIITVDN 147

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G +  +A  YA  +GID+++ DHH+       A A+V+P R D      +LC  GV+F V
Sbjct: 148 GISCCEAALYAKEKGIDLVITDHHESLGTLPEAAAVVDPKRCDCNFASKNLCGVGVLFYV 207

Query: 219 LVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
           L+ +  +L +            +   LDLVA+ T+ DVV L   NR  V  GL    RQ 
Sbjct: 208 LIAVRAVLIEKGYYLSRSAAPCMGQFLDLVAIGTIGDVVNLDANNRRLVKAGLQRMHRQN 267

Query: 276 -NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG-ESNLGSRLLISDDSQELEML 332
              G+KAL E   I    I   ++ + + P +NA GR+  + N     L+SDD  +   L
Sbjct: 268 AQIGVKALAEVSRIDMAKIDPVSIAFDLCPRLNAAGRLKLDDNPALLCLLSDDYDKALSL 327

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A+KLD  N+ R   E  ML +A+   L Q +D    +V+V+    W  GI GL+A RLKE
Sbjct: 328 AVKLDFCNRRRSDFEKVMLAEAKEDALLQAND----NVLVLYRSSWLSGISGLIAGRLKE 383

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM--VSFAVEEGILVKGGGHAMAAGLTVER 450
           ++ +P F  + + +    GS RS+ GF I             +L++ GGH+MAAG T++ 
Sbjct: 384 QYQKPCFVFAGDTENV-TGSARSVPGFSIVGALNHINDAAPDLLLRYGGHSMAAGATLKV 442

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NIALIDMLESAGPYGAGNPNP 509
               R  +   K    ++           DG+L  S   ++     LE+ GP+G G P P
Sbjct: 443 TQLKRFKELLNK--EALILNDKGEEEVLSDGILPESYFKDLDFALALEACGPWGQGFPEP 500

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           VF      ++  RV+   H++    + D+    AI FR              G  +    
Sbjct: 501 VFDG-VFYIEETRVLANRHVRFRLRT-DNTVFSAIRFRASVYEKNLL----PGIEVKAAF 554

Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592
            + V+ +  ++R ++++    PV
Sbjct: 555 SVGVDRYYANERVEIKIEYIEPV 577


>gi|315636757|ref|ZP_07891986.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter butzleri
           JV22]
 gi|315478974|gb|EFU69678.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter butzleri
           JV22]
          Length = 522

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 138/548 (25%), Positives = 255/548 (46%), Gaps = 42/548 (7%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L  R+++           +  + P P    D D A RRI +AI  +E I I GDYDVDG
Sbjct: 12  LLSARHINNP------YSKLADIPP-PTSFKDIDIATRRIKKAILENETITIVGDYDVDG 64

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S  +M+ F    ++  N  IP+R   GYG +  +++        L+ITVD G ++Y+A
Sbjct: 65  IVSTTIMLDFFKQINIKVNHIIPNRFEHGYGLSTKIVD---LIEKGLVITVDNGISAYEA 121

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
                 + ID+I+ DHH V  +   A A++NP + D       +C A V + +   I + 
Sbjct: 122 SLKLKEKNIDLIITDHHTVGEKIPQALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKKE 181

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           +  +       ++   LDL+ +A V D++P+  LN     +GL   +       K L   
Sbjct: 182 MNLN------VNMSDYLDLLCIAIVADIMPMTALNYTITKQGLKKLKSSSREAFKLLNSI 235

Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
           + +   + ++++G+ I P +N+ GR+ ++ +    L+S+DS         LD LN  R+ 
Sbjct: 236 L-LKESLISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANEYLSLLDELNNYRKT 294

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
           ++  +  +A  K+       +  + I+V  + WH G++G++A++L   + +P+F  + +E
Sbjct: 295 LQEDISNKANLKI------DKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFIFTVQE 348

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
           +    GS R+    ++ +++S A    +L+  GGH  AAGL+++  N         +   
Sbjct: 349 NNIAKGSVRANSNINLYELISKA--SHLLIGFGGHKNAAGLSLKLENIEEFEKIINEELE 406

Query: 466 NIVPALITTPVFKID--GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
           N    L      +ID  G L+ S+V++  + ++E   PYG  N  P+F   N  L    +
Sbjct: 407 NFKDDL----HIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNLVKYDL 462

Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           +     HL++T  + +    +AI F      +   L        ++   +  N ++G   
Sbjct: 463 IGRDKNHLKLTL-NSNGVIFEAIKFNDSNKNIPNIL--------NLIVSVAKNEFKGVIT 513

Query: 582 CQLRVLDA 589
            Q  + + 
Sbjct: 514 PQFLIQEI 521


>gi|260494322|ref|ZP_05814453.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_33]
 gi|260198468|gb|EEW95984.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_33]
          Length = 844

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 161/581 (27%), Positives = 282/581 (48%), Gaps = 33/581 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     ++  +  I+  ++ NRN+S+D   DF          +P  L 
Sbjct: 6   KWIL-ENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D D A +RI +AI +++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG
Sbjct: 55  DMDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   NE A L+I+VDCG  S + + +A    +D I+ DHH++  +   A A++N
Sbjct: 114 LNKEAIQTLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL
Sbjct: 174 PKRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312
           +  NR +V +GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ 
Sbjct: 228 VSDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 287

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           ++     L + +D  +   +  KL   N  R+ ++  +LE + A++  +   +   ++I+
Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNIERKNIQKKILEMSIAEI--EKKQLYNKNLIL 345

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431
           V    +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +       
Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGLNI--VECLNSVS 403

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ILVK GGH+ AAG T++  N         K+        +     KI+ +L    VN  
Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYE 463

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549
            +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F   
Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    +S          L +  ++     +L++ D  
Sbjct: 524 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 560


>gi|301165990|emb|CBW25564.1| putative single-stranded-DNA-specific exonuclease [Bacteriovorax
           marinus SJ]
          Length = 579

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 161/562 (28%), Positives = 260/562 (46%), Gaps = 20/562 (3%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              ++ R+   R +      +FL+  ++  MP    + D  KA+ RI+QAI N+EKI I+
Sbjct: 21  FHPVIQRIFDKREMGPKEIAEFLSWDLKS-MPSLTSMKDVQKASTRIIQAIENNEKIAIY 79

Query: 99  GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           GDYDVDG  S AL+  F     +   +  P R ++GYG +P  ++K   EG +++ITVDC
Sbjct: 80  GDYDVDGTTSCALLYHFFKMIDIEVGLIQPSRFIEGYGIHPPSIDKAHEEGYKVVITVDC 139

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYALVNPNRLDDL--SGQGHLCAAGVV 215
           G T+ +A   A   GID+I+ DHH+    E   A+A+VNPNR D+   S    L    V 
Sbjct: 140 GITNNEAATRAKEIGIDLIITDHHKDARDEMPDAFAIVNPNRRDEPKDSELKALAGVTVG 199

Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
           F + V I   L           L  LL   A+ T+CD+  L   N   V  GL       
Sbjct: 200 FALAVQIREDLIAAG--RKIPSLYPLLQFAAIGTICDLAKLNPTNLKIVRHGLKQIPSTE 257

Query: 276 NPGLKALIE-RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
            PG++A           + +E L + IGP IN+ GR+       +LL  +D ++      
Sbjct: 258 YPGIRAFFSPEERERGFVPSEKLSFNIGPLINSKGRLDHPEKALQLLTIEDDKKAFEYYS 317

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
            L++ N  R+ +++ +   A+ +VL   +  +   V +V    WH G++G++A++L E F
Sbjct: 318 HLEICNNERKFIQAEVFNSAKEQVLKNLNGSEHI-VSIVYSPEWHEGVIGIVASKLVETF 376

Query: 395 GRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453
             P+   +  EE G    S RS    ++           + +K GGH  AAGL++   N 
Sbjct: 377 KVPAIVFTNAEEKGVIKASARSAGDLNL--FDCLNENADLFLKFGGHKAAAGLSMPVENL 434

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
            +  +         +PA+  T     D  +    +N  L+  LE   P+G GN  P+F  
Sbjct: 435 SQFKENMLSTIAK-LPAIQRTVQSYYDVEIGPEEINPRLLKELELLEPFGMGNQKPIFKM 493

Query: 514 PNHKLQSIRVVNLAHLQMTFESQD--SETLQAIAFRVYGTPLGEFL------MQSRGKRM 565
              +L +  ++   H++ +  S +  S  L+ I+F   G    E         +  G  +
Sbjct: 494 KGFRLDNYDILKDVHVRWSLSSLNDPSTKLKGISFNYIGKWGIEDPQDLYNAQERNGDEL 553

Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587
                L VN++RG++  QL + 
Sbjct: 554 TAYFTLGVNHFRGNQYIQLMIE 575


>gi|121612339|ref|YP_999748.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|87248941|gb|EAQ71903.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 523

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 147/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A V D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFVIKEI 522


>gi|254457069|ref|ZP_05070497.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacterales
           bacterium GD 1]
 gi|207085861|gb|EDZ63145.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacterales
           bacterium GD 1]
          Length = 529

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 169/545 (31%), Positives = 278/545 (51%), Gaps = 39/545 (7%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L NR    +      +  +   +P+P +L D DK+A++I  AI N++KI + GDYDVDG
Sbjct: 16  LLSNR-FESE------DKKLSQ-IPNPSLLQDADKSAKKIADAIRNNKKITLVGDYDVDG 67

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
            +S A+M+ F        +  IP+R  DGYG +P+++E+     A L+ITVD G ++ +A
Sbjct: 68  VSSTAIMVDFFRQIPYPLDAIIPNRFTDGYGVSPTVLERV---DADLVITVDNGISALEA 124

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
            +    + ID+I+ DHH        AYA+V+P           +C A V +L+L L+ + 
Sbjct: 125 ARICKERHIDLIITDHHTPDDSLPDAYAIVDPKLSSCEYPFKEICGAQVAWLLLALVKKE 184

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           L       L+ D+   LD++A+A + D++PLI +NR  V +GL V      P    + + 
Sbjct: 185 L------SLSIDMRQFLDILAIAIIADIMPLIDINRTLVKEGLKVLMNSNRPASIVIRDF 238

Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
           +N  S IT+E++ + I P IN+ GR+ ++++      + D+         L  LN  R+ 
Sbjct: 239 LN-KSTITSEDIAFQIAPRINSAGRLEDASIALEFFCAKDTHTAYKQFELLGKLNDLRKE 297

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
            E+   ++A        D    A VIVV  + WH G+VG++AARL +KFGRP+  +S  E
Sbjct: 298 TEAEATKEAI------ADANPDADVIVVAKENWHEGVVGIVAARLVDKFGRPAIVLS-IE 350

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
           +G   GS RSI    I +++     E +L K GGH MAAGL ++  N     D     A 
Sbjct: 351 NGVAKGSARSIGEISIYELIKA--NERLLTKFGGHKMAAGLGLQEENIEAFRDAINFTAS 408

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525
             +      P  K+ G+L++  ++  L+++L+S  PYG  N  P F   + ++ SI+ + 
Sbjct: 409 -TLNPEDFIPKEKVTGILSSEDIDFELLNLLQSFEPYGEANHRPSFLLRDAEIVSIKTMG 467

Query: 526 LA--HLQMTFES--QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
               H ++T +    D +TL+ I FR       + L     +++  +  +  N + G   
Sbjct: 468 KEKSHCKITLKQHPHDRKTLELILFR-------QVLEMPTDRKISCSYTVAKNEFNGRIS 520

Query: 582 CQLRV 586
            QL V
Sbjct: 521 LQLLV 525


>gi|257463169|ref|ZP_05627569.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D12]
 gi|317060761|ref|ZP_07925246.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D12]
 gi|313686437|gb|EFS23272.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D12]
          Length = 842

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 146/589 (24%), Positives = 270/589 (45%), Gaps = 36/589 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    Q              I  IV  ++  RN+S            +    +P +L 
Sbjct: 5   KWIYQNYQYYPQEKEET-----IHSIVYSIMKERNLSY----------RKEFTSNPYLLK 49

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D DKA   + +A    + + I+GDYDVDG  SV+L    L+        YIP R  +GYG
Sbjct: 50  DMDKAVHLLQEAKKKQQTVWIYGDYDVDGITSVSLCYLALTELGYPVEYYIPLR-DEGYG 108

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++    +G +++ITVDCG  S   + +A + G+ +I+ DHH+++ E   A A++N
Sbjct: 109 LNQEALQYIYEQGGRIVITVDCGIVSVKEVDFANSLGMTMIITDHHEIQGELPKAAAVIN 168

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R ++L     L   G  F ++  ++    +        ++    D+VAL TV D+VPL
Sbjct: 169 PKREENLYPFPSLAGVGTAFFLVTALFEQEGKR------EEIQKYFDIVALGTVADIVPL 222

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIGE 313
           +  NR  V +GL +  +    GL+ L++R+         +A ++G+++ P  NA GR+ +
Sbjct: 223 VEDNRILVQQGLALLAKSQWTGLRILVKRLFPDYETRRFSAYDIGFILAPIFNAAGRLED 282

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +    +L +  DS++       L   N  RR ++  +L+    ++  Q   +++ + +V+
Sbjct: 283 AKSSVKLFLEKDSKKANAQIDSLIQNNMERRRVQEKILQACLEEI--QQKKLEEKNALVI 340

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
             + +H G++G++A++L ++F +PS  +    E+G    S RSI G +I + +       
Sbjct: 341 AREGFHHGVIGIVASKLVDRFYKPSIVMEIKPEEGIATASCRSISGINIVEALGE--ISP 398

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L++ GGH+ AAG ++   N     + F+K     V   +      I   L    +   L
Sbjct: 399 LLLRYGGHSGAAGFSILIENISTFYEEFEKVLSRKVTEELLAKKLSITKELLPFQIQYPL 458

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  +    P+GA NP P+FA  + +L  IR++     HL       D+     + F+   
Sbjct: 459 LHDMRYLEPFGASNPAPIFALKHCRLDKIRLIGADKKHLMCNIHHGDTVFWNCVWFQASD 518

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK 599
                       K + +  HL +  +RG  + ++ + D    +     +
Sbjct: 519 VYEELLFA----KEVDIAFHLKLEMYRGRYQYKIFIEDIQISKQEKEKQ 563


>gi|120603123|ref|YP_967523.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           vulgaris DP4]
 gi|120563352|gb|ABM29096.1| exonuclease RecJ [Desulfovibrio vulgaris DP4]
          Length = 580

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 170/593 (28%), Positives = 276/593 (46%), Gaps = 39/593 (6%)

Query: 16  FRWVSLLGQEG-INRALAITQKHAIPDIV---------ARVLVNRNVSIDYAKDFLNPSI 65
            RW+     EG +  + ++ ++  I D++         +        S+     +L+P +
Sbjct: 11  KRWIYRPEVEGALPPSASLAERLGISDLLLRLLLRRGLS--------SVQDMDVYLSPQL 62

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           R L P         +AA  I   I       ++GDYDVDG  S AL+   L    V+   
Sbjct: 63  RHLAPL-EEWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGVDVRH 121

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           ++PDR  +GYG N   +E+   +G +L++TVDCG +    +  A   G+ V+V DHH   
Sbjct: 122 HLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPP 181

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA+A+ NP           L   GV F V+  +   L +       +D+  +LDLV
Sbjct: 182 EVLPPAHAICNPRLACC--PCPALAGVGVAFFVMAAVNAALGER--SGRRYDMREVLDLV 237

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGP 303
           AL T+ DVV L G NR  V  GL+       PG+ AL      +    + A  + + + P
Sbjct: 238 ALGTLADVVDLGGQNRILVKNGLLKIAEARRPGMAALKAVAGYNPSASLGAGQVVFGLAP 297

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+GE+ +  +LL + +  E   LA +LD +N +RR+ E  +LE+A+ +  +Q  
Sbjct: 298 RINAAGRLGEAEMALQLLRARNHGEAAQLAQRLDAMNTDRRVEEDRILEEAKRQAESQAA 357

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                   V+ G+ WHPG++G++A+R+ E + RP+  +   E     GSGRS+  FD+  
Sbjct: 358 S---RMGFVLHGEDWHPGVIGIVASRIVEAYYRPTLIL-CTEGETLKGSGRSVSEFDLHA 413

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +S      + +  GGH  AAG++++      L + F       +     T   K+DG L
Sbjct: 414 GLSQC--ADLFLGFGGHRQAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGDL 471

Query: 484 NASAV-NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
                 +  ++  LE   P+G GN  PVFA P   ++ +R       H+++    +    
Sbjct: 472 GFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCGV 531

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           TL A A+R      GEF  + RG R+ +     ++ + G+    LR+ D  P 
Sbjct: 532 TLHAKAWRQS----GEFSDRLRGTRIRLAYTPRIDRYSGAASVDLRIRDWQPA 580


>gi|296274553|ref|YP_003657184.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098727|gb|ADG94677.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter
           nitrofigilis DSM 7299]
          Length = 520

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 144/546 (26%), Positives = 255/546 (46%), Gaps = 40/546 (7%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L  R++            +  + P P    D  KA +R+ QAI ++E+I I GDYDVDG
Sbjct: 12  ILSARHLKST------YSKLADIPP-PTGFKDIKKATKRVKQAILDNERITIVGDYDVDG 64

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S ++M+ F        +  IP+R   GYG +  + E      + L+ITVD G ++  A
Sbjct: 65  VVSTSIMVDFFRQVGYEVDYIIPNRFEHGYGLSTKISE---LIDSGLVITVDNGISACAA 121

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
            Q   ++ IDVI+ DHH V  +   AY+++NP + D       +C A V +     I + 
Sbjct: 122 TQILNDKNIDVIITDHHTVGDKIPNAYSIINPKQEDCNFPFKDICGAQVAWYFCASIKKE 181

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           L  D       ++ + LDL+ +A + D++P+  LN   V  GL          +  L   
Sbjct: 182 LNLD------INMTNFLDLLCIAIIADMMPMTSLNYTMVKNGLKKIETSNRVAISYLRST 235

Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
           +  SS I ++++G++I P IN+ GR+ ++++    L+S + +E       L+ LN  R++
Sbjct: 236 MRKSSFI-SDDIGFIIAPKINSAGRMDDASIALSFLLSSNFEEASEALDLLEELNNKRKI 294

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
           ++ ++  +A+ ++  +         IVV GD WH G++G++A++L   F RP+F  S  +
Sbjct: 295 LQESICLKAKYEIDMK------DKAIVVWGDNWHEGVIGIVASKLSHAFKRPAFIFSISD 348

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
            G   GS R+    ++  ++S A    +L+  GGH  AAG++++  +             
Sbjct: 349 -GIAKGSARANADINLHTIISEAQH--LLLGFGGHKNAAGISIKIEHLDEFKAIINSTLS 405

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525
                L   P     G L+ S+V++  +D++E   PYG  N  P+F   N K+    +  
Sbjct: 406 KASKELYIEPT--TLGELDISSVDLEFMDIIEMFEPYGLENHKPIFKISNAKVIKSELFG 463

Query: 526 --LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
               HL++   + D    +AI F         +  +     + +   +  N +RG    Q
Sbjct: 464 KEKNHLKLYL-NVDGYDFEAIKF---------YSEKIDKNSVDMIISINKNEFRGDITPQ 513

Query: 584 LRVLDA 589
             + D 
Sbjct: 514 FLIQDF 519


>gi|307746990|gb|ADN90260.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 523

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 146/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 IEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A + D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMSKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFVIKEI 522


>gi|153952383|ref|YP_001397298.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|157414349|ref|YP_001481605.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|152939829|gb|ABS44570.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|157385313|gb|ABV51628.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315931278|gb|EFV10247.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 523

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 146/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A + D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMSKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFVIKEI 522


>gi|46579317|ref|YP_010125.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46448731|gb|AAS95384.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233144|gb|ADP85998.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio
           vulgaris RCH1]
          Length = 571

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 170/593 (28%), Positives = 275/593 (46%), Gaps = 39/593 (6%)

Query: 16  FRWVSLLGQEG-INRALAITQKHAIPDIV---------ARVLVNRNVSIDYAKDFLNPSI 65
            RW+     EG +  + ++ ++  I D++         +        S+     +L+P +
Sbjct: 2   KRWIYRPEVEGALPPSASLAERLGISDLLLRLLLRRGLS--------SVQDMDVYLSPQL 53

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           R L P         +AA  I   I       ++GDYDVDG  S AL+   L    V+   
Sbjct: 54  RHLAPL-EEWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGVDVRH 112

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           ++PDR  +GYG N   +E+   +G +L++TVDCG +    +  A   G+ V+V DHH   
Sbjct: 113 HLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPP 172

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA+A+ NP           L   GV F V+  +   L +       +D+  +LDLV
Sbjct: 173 EVLPPAHAICNPRLACC--PCPALAGVGVAFFVMAAVNAALGER--SGRRYDMREVLDLV 228

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGP 303
           AL T+ DVV L G NR  V  GL+       PG+ AL      +    + A  + + + P
Sbjct: 229 ALGTLADVVDLGGQNRILVKNGLLKIAEARRPGMAALKAVAGYNPSASLGAGQVVFGLAP 288

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+GE+ +  +LL +    E   LA +LD +N +RR+ E  +LE+A+ +  +Q  
Sbjct: 289 RINAAGRLGEAEMALQLLRARKHGEAAQLAQRLDAMNTDRRVEEDRILEEAKRQAESQAA 348

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                   V+ G+ WHPG++G++A+R+ E + RP+  +   E     GSGRS+  FD+  
Sbjct: 349 S---RMGFVLHGEDWHPGVIGIVASRIVEAYYRPTLIL-CTEGETLKGSGRSVSEFDLHA 404

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +S      + +  GGH  AAG++++      L + F       +     T   K+DG L
Sbjct: 405 GLSQC--ADLFLGFGGHRQAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGDL 462

Query: 484 NASAV-NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539
                 +  ++  LE   P+G GN  PVFA P   ++ +R       H+++    +    
Sbjct: 463 GFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCGV 522

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           TL A A+R      GEF  + RG R+ +     ++ + G+    LR+ D  P 
Sbjct: 523 TLHAKAWRQS----GEFSDRLRGTRIRLAYTPRIDRYSGAASVDLRIRDWQPA 571


>gi|86153964|ref|ZP_01072166.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85842502|gb|EAQ59715.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 523

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 147/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + V+  +
Sbjct: 119 IEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYVIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A + D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMSKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFVIKEI 522


>gi|86152367|ref|ZP_01070577.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|88597746|ref|ZP_01100979.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|315123640|ref|YP_004065644.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85840664|gb|EAQ57916.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|88190050|gb|EAQ94026.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284925331|gb|ADC27683.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315017362|gb|ADT65455.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315928432|gb|EFV07744.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 523

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 148/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A V D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513

Query: 581 RCQLRVLDA 589
             Q  V + 
Sbjct: 514 TPQFVVKEI 522


>gi|33601279|ref|NP_888839.1| single-stranded-DNA-specific exonuclease [Bordetella bronchiseptica
           RB50]
 gi|33575714|emb|CAE32792.1| single-stranded-DNA-specific exonuclease [Bordetella bronchiseptica
           RB50]
          Length = 522

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 164/511 (32%), Positives = 250/511 (48%), Gaps = 23/511 (4%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KF 145
           I   ++++I  DYD DGA + A+ +R LS    + +  +P+R   GYG +P+++E   + 
Sbjct: 26  IEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRH 85

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 +IITVD G  S D +  A   GI V++ DHH        A A+VNPN+     G
Sbjct: 86  RRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFG 145

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAY 263
             HL   GV+F +++ +   LR+      +    L +L DLVAL TV DVV L   NR  
Sbjct: 146 SKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLL 205

Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLL 321
           V +GL   R  +  PG++AL           +  +LG+ +GP INA GR+ + +LG   L
Sbjct: 206 VTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACL 265

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
            +DD  +   +A +LD +N+ RR +E+ M +QA A    +  D    + + V    WH G
Sbjct: 266 TTDDEAQALEMARELDNINRERRTIEAEMRDQALA--AMEAPDAAAGATVCVFDPGWHQG 323

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439
           +VGL+A+RLKEKF RP+ A +   + +  GSGRSI    +   +        G++ K GG
Sbjct: 324 VVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGG 383

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGLT+   +F      F      +       P+ + DG L +   N  +  +L+  
Sbjct: 384 HAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQ- 442

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
             +GAG   P+F      ++S R+V   HL++  E +  +   AI F            Q
Sbjct: 443 QVWGAGFAAPLFLDE-FTVRSQRLVGGKHLKLALE-RGHQRFDAIWFGHD---------Q 491

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           S  +R+     L  N W G    QL +  A+
Sbjct: 492 SLPERIQAAYRLEQNIWNGMVSVQLVIEHAA 522


>gi|255323579|ref|ZP_05364709.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae
           RM3277]
 gi|255299293|gb|EET78580.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae
           RM3277]
          Length = 535

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 146/548 (26%), Positives = 259/548 (47%), Gaps = 37/548 (6%)

Query: 52  VSIDYAKDFLNPSI-RLLM------PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
           ++ +  K+ LN    + +       P P  L D  K A RI +AI  +EKI++ GDYDVD
Sbjct: 14  LNKEKIKELLNQRFEKDIHKKLSEIPTPDALKDVFKGAERIKRAIERNEKIVVVGDYDVD 73

Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           G  +  +M  F     V    + IP+R  DGYG NP ++E+  +  A LI+TVD G ++ 
Sbjct: 74  GVIASVIMAEFFDDLGVSEYFVRIPNRFSDGYGLNPQIVEEIAD--ASLIVTVDNGISAN 131

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           DA Q    +GID+I+ DHH        AYA++NP + D       +C A V + ++  + 
Sbjct: 132 DAAQICKQKGIDLIITDHHMPPDVLPEAYAIINPKQKDCPFPNVEICGAQVAWYLVGALK 191

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
            + R +      +D+   LDL+A+A + D++ L  LNR  V  G+        P   A+ 
Sbjct: 192 DVCRIN------YDMGKFLDLLAIAIIADMMELRDLNRILVKLGVNRLNSSRRPAFTAIK 245

Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
           +          +++ ++I P IN+ GR+ ++++    L +            +   N +R
Sbjct: 246 QLYGKDK-FECDDISFLIAPLINSSGRMDDASVSFEFLRAKSLDRACECLDTIVSFNNSR 304

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           +  E  + E +   V       +   +IV  G  WH G++G++A+RL ++F +P+   S 
Sbjct: 305 KEEERTLFECSLKDVR------EDEHIIVTWGRGWHEGVIGIVASRLAKQFKKPAIVFS- 357

Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
            ++ +  GS RS+   DI  ++  A  E +L   GGH  AAG+ ++  N     +     
Sbjct: 358 IDENRAKGSARSVGKLDILSLI--ASHENLLAGYGGHKGAAGIVIDPANLEAFKNAINSS 415

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
              ++     +   +  G + A  V+  L+++LE   PYG  NP P+F   +  +++ ++
Sbjct: 416 C-MLMDLHEFSAFDEPLGEIEAGEVDFELLEILEHFEPYGQKNPRPLFEIKSAVVKNKKL 474

Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           +     HL++  + +D + L+A+ F     P         G+ + +   +  N +RG   
Sbjct: 475 IGREQNHLKLILQ-KDGKCLEALFFNFTREP-------HAGESIDLVFSVSKNSFRGLVT 526

Query: 582 CQLRVLDA 589
            QL V + 
Sbjct: 527 PQLLVKEI 534


>gi|307722057|ref|YP_003893197.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980150|gb|ADN10185.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurimonas
           autotrophica DSM 16294]
          Length = 529

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 157/522 (30%), Positives = 267/522 (51%), Gaps = 31/522 (5%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +P+P +LTD  KAA++I +A+ N+++I + GDYDVDG +S A+M+ F           IP
Sbjct: 31  IPNPELLTDASKAAKKIAEAVQNNKRITLVGDYDVDGVSSTAIMVDFFKQIPYPLEAIIP 90

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  DGYG +P+++++     A L+ITVD G ++ +A +    + I++I+ DHH      
Sbjct: 91  NRFTDGYGVSPTVLQRV---DADLVITVDNGISAIEAAEICKQRDINLIITDHHTPCEIL 147

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             AYA+V+P           +C A V +L+L L+ + L  D       D+   LD++A+A
Sbjct: 148 PDAYAIVDPKLPTCNYPFKEICGAEVAWLLLGLVKKELALD------IDMKQFLDILAIA 201

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            + D++PLI +NR  V +GL        P    + + +N  S IT+E++ + I P IN+ 
Sbjct: 202 VIADIMPLIDINRTLVKEGLKQLMHSSRPSSIVIRDFLN-KSKITSEDIAFNIAPRINSA 260

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ ++++      + D+         L  LN  R+  E+   ++A A V       +  
Sbjct: 261 GRLEDASIALDFYTAPDTHTAYKQFELLGQLNDLRKATEAQTTQEAIASVN------EDD 314

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            VIVV G+ WH G+VG++AARL +KFGRP+  +S +++ +  GS RSI   +I +++   
Sbjct: 315 KVIVVSGENWHEGVVGIVAARLVDKFGRPAIVLSIKDE-EAKGSARSIGDVNIYELIKE- 372

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
             E +L K GGH MAAGL +   +           A   +P     P  +I G+L +  +
Sbjct: 373 -NEHLLTKFGGHKMAAGLGLHVKDIEAFTKAINTSAQK-IPQDDFIPKEQISGILASEDI 430

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES--QDSETLQAI 544
           +  L+ +LE   P+G  N  P F   + ++ SI+++    +H ++         +T++ I
Sbjct: 431 DTELLALLEQFEPFGEANLRPTFLIKDAEVVSIKLMGADKSHSRIEVRQHPHQRKTIEII 490

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           AFR               K++  +  +  N + G    QL V
Sbjct: 491 AFR-------RVFEMPVDKKITCSYSVAKNEFNGRVSAQLLV 525


>gi|217967983|ref|YP_002353489.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus
           turgidum DSM 6724]
 gi|217337082|gb|ACK42875.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus
           turgidum DSM 6724]
          Length = 823

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 152/579 (26%), Positives = 266/579 (45%), Gaps = 30/579 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
            RWV L  +E   +   + +K  I  ++AR+L+NR +S    AK FLNP I  L  DP  
Sbjct: 2   RRWVFL-FEENKGQEEVLARKLGISSLLARLLLNRGISEPSKAKKFLNPKIEDLY-DPFT 59

Query: 75  -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
              D +KA   +++      KI++FGDYDVDG  +  LM R LSH   + + Y+P R+ +
Sbjct: 60  YFPDLEKAIDFLIKLRNAKRKILVFGDYDVDGITATTLMYRVLSHWGWDVSFYVPHRLDE 119

Query: 134 GYGPNPSLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           GYG     ++K +++     L+ITVDCG  S   ++Y    G++VI+ DHH  +   IP 
Sbjct: 120 GYGLKEKSVKKALSQNEFIGLLITVDCGIKSKKEVEYLKKNGVEVIITDHHIPEEGSIPE 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             LV    L++     ++   GV F  L  +   + +D            L+LV L T+ 
Sbjct: 180 ALLVLDPYLNN-YPYPYMAGVGVAFKFLKALGDAIGKDIYKEKGV-----LELVTLGTLG 233

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGG 309
           D++ L   NR  V  GL         G++ LI +V    ++ I+++++ + I P INA G
Sbjct: 234 DLMELKDENRVLVRYGLEKILNSDLVGVRTLIRKVGLDKNTFISSKDIIFNITPRINAIG 293

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R  E     RL ++++ +E E+L  KLD  N+ R+     + E A+  +  +  DI+   
Sbjct: 294 RFKEVEEAIRLFLTENVEEAEILFDKLDEFNRKRKEEVERVYEMAKEMLREE--DIENNK 351

Query: 370 VIVVEGDRWHPG---IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            + +    W      ++G++A+ L E++  P F +  +E    + SGR +E  ++ + VS
Sbjct: 352 AVFLYNSLWGRDVGGVMGIVASMLVEEYNVP-FFLGRKEGEFIVFSGRGVEDVNLFEFVS 410

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                  L+  GGH  A G ++   ++    +   + A+ I   L  TP  KID  +   
Sbjct: 411 KL--SDYLINFGGHKGAVGFSLFEKDYEDFKNSAVRLANEIWKELDFTPKVKIDAEIPLD 468

Query: 487 AVNIA----LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL-QMTFESQDSETL 541
            +        +  L+   P+G GN  P F   +  +     +      ++       + L
Sbjct: 469 KIKSENIGKFLSELDMLSPFGPGNEEPRFKINSTVIAYFEKMGNGGRYKIKIGDISGKIL 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
               F +    + E  ++   + + +   +    ++G +
Sbjct: 529 STPIFSLG---IEEEALKESPQTVDIVLRIEKEGYQGRE 564


>gi|57169020|ref|ZP_00368148.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli
           RM2228]
 gi|57019565|gb|EAL56255.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli
           RM2228]
          Length = 523

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 150/549 (27%), Positives = 273/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +AI  +EKI I GDYD
Sbjct: 9   IRKILASR------FEKDLHTKLCDL-PLPCCLKDIYKAANRIKEAIDKNEKIAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           ++A +    + ID+I+ DHH  +     A+A++NP + D       +C A V + ++  +
Sbjct: 119 FEAAKLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDFPDIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A V D++ L  LNRA V +G+    +      KA+
Sbjct: 179 KEVCKLK------YDMGKFLELLAIAIVADMMELRDLNRALVRRGIECINKSKRVAFKAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            ++         +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KQYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDLDKASAYLEQIISFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E + +++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLSQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             +  +  GS RS+   DI  ++S A    IL   GGH  AAGL+++  +F +     +K
Sbjct: 346 QNDQ-RLKGSARSVGKIDILALISKANF--ILSNYGGHKGAAGLSLDLDSFEKFKTIIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L+ + ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECMEISQSEFL-DTDEILGILDPNEIDFEMLEILESFEPFGHKNPRPFFILENLYVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
            +     HL++   ++D++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 FLGKDEKHLKLIL-TKDNKTIEALFFNFDKEP-------QLYENISLLGSISKNEFRGLA 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFIIKEI 522


>gi|57236940|ref|YP_178055.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           RM1221]
 gi|86150556|ref|ZP_01068780.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|218561721|ref|YP_002343500.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|57165744|gb|AAW34523.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           RM1221]
 gi|85839008|gb|EAQ56273.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|112359427|emb|CAL34209.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315057469|gb|ADT71798.1| Single-stranded-DNA-specific exonuclease recJ [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 523

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 148/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A V D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513

Query: 581 RCQLRVLDA 589
             Q  V + 
Sbjct: 514 TPQFVVKEI 522


>gi|205355768|ref|ZP_03222538.1| putative single stranded DNA specific exonuclease [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205346545|gb|EDZ33178.1| putative single stranded DNA specific exonuclease [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 523

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 148/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A V D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513

Query: 581 RCQLRVLDA 589
             Q  V + 
Sbjct: 514 TPQFVVKEI 522


>gi|298243930|ref|ZP_06967737.1| single-stranded-DNA-specific exonuclease RecJ [Ktedonobacter
           racemifer DSM 44963]
 gi|297556984|gb|EFH90848.1| single-stranded-DNA-specific exonuclease RecJ [Ktedonobacter
           racemifer DSM 44963]
          Length = 606

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 185/627 (29%), Positives = 279/627 (44%), Gaps = 64/627 (10%)

Query: 9   VECSI--SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65
           +  S   S   W     Q    +   +  +     I A++L NR +      + FL    
Sbjct: 1   MASSANFSSSTWDVFP-QLSAEQFKQLGTRTQYERIRAQLLYNRGIEETSKMRFFLEAHY 59

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS---VN 122
             L+ DP  L D D+A  RI QA+   E I ++GDYD DG  S AL+ R L         
Sbjct: 60  ENLL-DPSKLIDMDRAVTRIQQALAEREHITVYGDYDADGVTSSALLYRALRTLKHPEAP 118

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
            + +IP R+ DG G N   ++     G  LIIT DC S+  + ++YA   GIDVI+ DHH
Sbjct: 119 LSFHIPHRLNDGCGLNLHALDMLKARGTTLIITTDCASSDVEQVEYARTLGIDVIITDHH 178

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
           +   E   AYA+VNP R D   G+ +LC AG+ F ++  +YR  R+        D   LL
Sbjct: 179 RPPEELPRAYAMVNPWRPDCEYGERYLCGAGIAFKLVQALYRAYRRS-----VEDAQDLL 233

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMI 301
           DLVA+ TV D+ PL+G N      GL        PGL  LI R  +    I   ++ + I
Sbjct: 234 DLVAIGTVADIAPLLGENHTLTRLGLRKLNHTQKPGLLELIRRSTLQMGHIRERDIAFAI 293

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
            P INA GR+ E+++   LL +DD+ E   +A +LD LNQ R+     ++     +  TQ
Sbjct: 294 APRINAAGRMKEASIAFNLLTTDDTHEATRIAAELDSLNQGRQQETEELMRNVRTQAQTQ 353

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFD 420
                +  VI+V G+ WH GI+GL+A +L E+  +P   +S         GS RS + F+
Sbjct: 354 S----ELPVILVRGEDWHEGIIGLVAGKLAEEVQKPVLVLSDNHATSLSRGSARSPKDFN 409

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN-------------- 466
           I  + +    +G   + GGHA AAG T+++ +  +L      +  N              
Sbjct: 410 I--IEALRGFDGTFERYGGHAQAAGFTLQQASIEKLHQHLIAWKENGGESVPAQIEGTQL 467

Query: 467 -----------IVPALITTPVFKIDGV---LNASAVNIALIDMLESAGPYGAGNPNPVFA 512
                           I  P   ID     L+   +N  L   +    P+GAGNP PVF 
Sbjct: 468 PDQTGLVVESTQESEEIPLPPRMIDLEFNHLHLQDLNHELYKEIHQLAPFGAGNPEPVFK 527

Query: 513 FPNHKLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
             +  ++S  +      +L +  E + + T LQ      +      F       ++++  
Sbjct: 528 MKHLIIKSKWLSGREKQNLSLRLEQKGARTQLQG----TFVRGAAHFESLREVTQVNIIF 583

Query: 570 HLCVNYWRGSKRC----QLRVLDASPV 592
           HL V             +L++LD  P+
Sbjct: 584 HLEVYE----DSIGPSTRLKLLDIEPI 606


>gi|257466534|ref|ZP_05630845.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917689|ref|ZP_07913929.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691564|gb|EFS28399.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 842

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 149/580 (25%), Positives = 277/580 (47%), Gaps = 34/580 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +    +     +K AI  IV  ++  RN+S                 +P +L 
Sbjct: 5   KWIYQNYKYYPQKIE---KKEAIHSIVYSIMKERNLSHQE----------NFNTNPFLLK 51

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D ++A   + +A    + I I+GDYDVDG  SV+L    LS        YIP R  +GYG
Sbjct: 52  DMEEAVSLLQEAKKKKQTIWIYGDYDVDGITSVSLCYLALSELGYEVEYYIPLR-DEGYG 110

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N   ++   N+G +++ITVDCG  S   + +A + G+ +IV DHH+++ E   A A++N
Sbjct: 111 LNQEALQSIYNQGGKIVITVDCGIVSSKEVDFANSLGMTMIVTDHHELQGELPKAAAVIN 170

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P R +++     L   G  F ++  ++    +        ++    D+VAL T+ D+VPL
Sbjct: 171 PKRKENIYLFPSLAGVGTAFFLITALFEKEGKRK------EITKYFDIVALGTIADIVPL 224

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAGGRIGE 313
           I  NR  V +GL +  +    GL+ L++R+         +A ++G++I P  NA GR+ +
Sbjct: 225 IEDNRILVQQGLSLLAKSQWTGLRILVKRLFPDYETHHFSAYDVGFIIAPIFNAAGRLED 284

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +    RL +  DS++       L   N +RR ++  +L+    ++  +   ++  + IV+
Sbjct: 285 AKSSVRLFLEKDSKKANEQIDYLIQNNLDRRAVQEKILQACLEEISQK--KLEDKNSIVI 342

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
             + +H G++G++A++L ++F +P+  +     +G    S RSI G +I  + S      
Sbjct: 343 AREGFHHGVIGIVASKLVDRFYKPTIIMEIKPNEGIATASCRSISGINI--VESLEAVSH 400

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L++ GGH+ AAG ++   N  +  + F+    + +   ITT    I   L    +   L
Sbjct: 401 LLLRYGGHSGAAGFSILIENIAKFYEEFEAILEDKISKEITTRKLNITKELLPFQIQYPL 460

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550
           +  ++   P+GA NP P+F+  + KL  IR++     H+       D+     + F+ + 
Sbjct: 461 LHDMKYLEPFGASNPAPIFSLKHCKLDKIRLIGADKKHIMCNIHHGDTIFWNCVWFQAFD 520

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                  +    + + V  HL +  +RG  + ++ + D  
Sbjct: 521 IYEELLYI----QEVDVAFHLKLETYRGRYQYKIFIDDIQ 556


>gi|118475638|ref|YP_892873.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414864|gb|ABK83284.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 530

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 149/553 (26%), Positives = 258/553 (46%), Gaps = 35/553 (6%)

Query: 52  VSIDYAKDFLNPSIRLLM-------PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
           +     ++ LN      +       P P  L D  KAA RI  AI N+E I I GDYDVD
Sbjct: 2   LDKTEIRNLLNKRFSNDLHKKLSEIPLPCELKDTYKAAERIKTAIQNNELIAIVGDYDVD 61

Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           G  S A+M  FL+  S +  + IP+R  DGYG N  ++ +   E   LIITVD G ++ +
Sbjct: 62  GVVSTAIMAEFLTDMSTDFIIRIPNRFKDGYGLNSDIVNEL--ESVALIITVDNGISANE 119

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
           A      +GID+I+ DHH        AYA++NP + +       +C A V + ++  +  
Sbjct: 120 AADLCAKKGIDLIITDHHMPPQILPQAYAIINPKQPECTFPNIEICGAQVAWYLVGALKE 179

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
           +    N     +D+   +DL+ALA + D++ L  LNR  V  G+           +A+  
Sbjct: 180 VCSLKN-----YDMGKFIDLLALAIIADMMELRDLNRILVRLGITRINSSKRACFEAIKC 234

Query: 285 RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRR 344
                     +++ ++I P IN+ GR+ ++++  + L S    E       +   N +R+
Sbjct: 235 FYGKDK-FEFDDISFLIAPLINSAGRMDDASVSFKFLRSKTIDEANSYLDMITCFNNSRK 293

Query: 345 LMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404
             E A+ E +   V           +IV  G+ WH G++G++A+RL +++ +P+   S  
Sbjct: 294 EQEKALFESSIKDVN------DNEDIIVTWGNEWHEGVIGIVASRLAKRYKKPAIVFS-I 346

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
           +  +  GS RS+  FDI  ++  A +E +L   GGH  AAGL +E  N            
Sbjct: 347 DGCRAKGSARSVGKFDILALI--ASQEKLLCGFGGHKGAAGLVIETNNLDEFKHAVNNSC 404

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
                    +   ++ G ++ +A++  L+++LE   PYG  NP P+F   + K+++ + +
Sbjct: 405 FLQ-DLYDFSGSDEVLGEIDHNAIDYELLEILEYFEPYGQRNPRPLFELKSAKVKNTKFI 463

Query: 525 NL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582
                HL++  + +  ++ +AI F    TP         G  + +   +  N +RG    
Sbjct: 464 GKEENHLKLILQ-KGGKSYEAIFFNYDYTP-------HVGDNIDLLVSVSKNSFRGLITP 515

Query: 583 QLRVLDASPVEGH 595
           QL + +   ++  
Sbjct: 516 QLLIKEIYELKNQ 528


>gi|283956206|ref|ZP_06373691.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792360|gb|EFC31144.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 523

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 145/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A + D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             ++    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNKEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
           ++     HL++   +++++T++A+ F     P          + + + G +  N +RG  
Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513

Query: 581 RCQLRVLDA 589
             Q  + + 
Sbjct: 514 TPQFVIKEI 522


>gi|92115123|ref|YP_575051.1| exonuclease RecJ [Chromohalobacter salexigens DSM 3043]
 gi|91798213|gb|ABE60352.1| exonuclease RecJ [Chromohalobacter salexigens DSM 3043]
          Length = 599

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 181/577 (31%), Positives = 260/577 (45%), Gaps = 25/577 (4%)

Query: 34  TQKHAIPDIVARVLVNR-NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS 92
            Q   + ++ ARVL  R N         ++PS+R L   P  L D  +AA RI QA+   
Sbjct: 29  AQAAGLSELQARVLAGRLNAYAGDIAPLVDPSLRYLTH-PERLQDARRAAERIAQAVAEG 87

Query: 93  EKIMIFGDYDVDGAASVALMMRFLSHCS----VNANMYIPDRIVDGYGPNPSLMEKF--I 146
           E I I  DYDVDG  S  +++R L+          +  I  RI DGYG +  L+E+   +
Sbjct: 88  EHIGILTDYDVDGITSHVVILRTLNELFGVPLHKLHSLIGHRIFDGYGISLPLVERTLAL 147

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNRLDDLS 204
           +    L+IT DCGS+    +      G+DV+V DHH + +   P  AYA VNP R D   
Sbjct: 148 SPRPSLVITADCGSSDEPRIARLHEAGLDVVVTDHHALPASGPPASAYATVNPTRADCDY 207

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKV-PLNFDLLSLLDLVALATVCDVVPLIGL--NR 261
               +    V +L + L   +L +     P    L   L  VAL TV D V L     NR
Sbjct: 208 PDPTIAGCMVAWLTMSLTRSVLIEQGVASPSTPKLSPWLSYVALGTVADCVSLGDSPANR 267

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRL 320
           A V  GL +  R      + + ER+   S     E L + +GP INA  R+ +       
Sbjct: 268 AVVSHGLTLINRMEAACWRVMAERLGTDSVPFDAETLAFQMGPRINARSRLDDPYAALHF 327

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           +++ D          LD  NQ+R+ +ES M+E+A +  L      + AS IVV  +  H 
Sbjct: 328 MLAADDATARRHLEVLDTDNQSRKAIESDMVERARSLALEALA--EGASAIVVFLEDGHA 385

Query: 381 GIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKG 437
           G+ G++A+RL + FGRP+  ++     G   GSGRSIEG  +   +  A E     L + 
Sbjct: 386 GVQGIVASRLVQAFGRPTLVLTPAAAAGMLTGSGRSIEGLHLRDALQRAHELAPEALPRF 445

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGH  AAG+ V R       D F       +      P    DG L  + +++A +D L 
Sbjct: 446 GGHRGAAGVGVPRERLTAFRDAFLTAVEEQLGGRDLFPYVLTDGALEPAQLSLASVDELA 505

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGE 555
              PYG     P+F     +++ +R V     HL +   S    + +AI FR      GE
Sbjct: 506 RLAPYGREFDAPLFEGE-FRIEQLRAVGADGNHLMLEL-SMGPVSHRAIWFRALTP--GE 561

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 G R+H    L  N W+G +  QL +  A PV
Sbjct: 562 VPAFGPGDRLHCAYKLARNRWKGRESLQLMIEHAEPV 598


>gi|149200058|ref|ZP_01877083.1| single-stranded-DNA-specific exonuclease RecJ [Lentisphaera
           araneosa HTCC2155]
 gi|149136816|gb|EDM25244.1| single-stranded-DNA-specific exonuclease RecJ [Lentisphaera
           araneosa HTCC2155]
          Length = 572

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 265/581 (45%), Gaps = 33/581 (5%)

Query: 20  SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCD 79
               +        I  +  +    A VL NR++    A  F N S+  L  DP    D  
Sbjct: 10  WYPKEVENEDLSDIQGRFQLSLPAATVLANRSLLKKNADCF-NASLASL-SDPFRFPDMQ 67

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           K   RI ++I  +EKI++ GDYD DG  S  L+   +     +++++I +R+ DGYGP P
Sbjct: 68  KTVERIFESIQKNEKIIVHGDYDTDGVTSSTLLNWVIKSYGADSSVFISNRLHDGYGPTP 127

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
           + M+  I  GA L+I+ DCG TS++A  YA   G+D I+ DHH    +   AYA++NP  
Sbjct: 128 TTMQNQIEAGASLVISTDCGITSFEAADYAHENGLDFIITDHHNPADQLPKAYAIINPRI 187

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
             +L     L   GV F +   + +            DL + LDLVAL T+ D  PLIG 
Sbjct: 188 TTELIDLYSLAGVGVSFKLCHALLK-FGSKIGKKATIDLRNGLDLVALGTIADSCPLIGE 246

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           NRA V  GL +      PG++AL E   + + ITA ++   I P INA GR+G+  + ++
Sbjct: 247 NRALVKNGLKLLNVNPRPGVRALYEATTLDTHITAADISRKISPKINAAGRVGDPMVSAK 306

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL S+   E   L  +L   N+ RR  E +   +A      Q        +++V G  WH
Sbjct: 307 LLASNSIHESRQLVGQLKNFNRIRRNAEKSAYMEALQIAKEQAKSS--PPLLLVVGPDWH 364

Query: 380 PGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           PG++GL++ +L + FG PS  +S  +   + +GSGRS +G ++  +        +L   G
Sbjct: 365 PGVIGLISTKLTKHFGLPSVVLSKDKNPDELLGSGRSCDGINL--LEGLKHCSDLLNNFG 422

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA--LITTPVFKIDGVLNASAVNIALIDML 496
           GH MAAGL++   N     +   +   + V             DG  +   +N   I  L
Sbjct: 423 GHPMAAGLSLAVNNLEAFREKIIELLESDVLDKVEKKRKHQYYDGEFSFQDLNEQFIGDL 482

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH------LQMTFESQDSETLQAIAFRVYG 550
           E   P+G GN  PVF F N +++        H      L      +       IAF  Y 
Sbjct: 483 ERMEPFGNGNDAPVFLFKNVQIRDT------HHPISAVLSGFVMDKFGTK---IAFTYYT 533

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRG--SKRCQLRVLDA 589
               ++     GK   +        +R   +K C+L + + 
Sbjct: 534 PF--DYSEFEPGKLYSIIATP----YRNFENKTCRLLLHEV 568


>gi|157165222|ref|YP_001467773.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           concisus 13826]
 gi|157101516|gb|EAT97331.2| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           concisus 13826]
          Length = 535

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 151/538 (28%), Positives = 256/538 (47%), Gaps = 31/538 (5%)

Query: 57  AKDFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR 114
           A+ F N   + L  +P P  L D  K A RI +AI  +E I I GDYDVDG  S  ++  
Sbjct: 23  ARRFCNDIHKKLSEIPTPSALKDIYKGANRIKEAIERNEHIAIVGDYDVDGVVSSVILAE 82

Query: 115 FLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG 173
           F     V N  + IP+R  DGYG NP ++++  +    LIITVD G ++ DA      +G
Sbjct: 83  FFDDLGVKNYLVKIPNRFKDGYGLNPEIIDELAS-DVSLIITVDNGISANDAAAICKEKG 141

Query: 174 IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP 233
           ID+I+ DHH   +    AYA++NP + D       +C A V + ++  +       +   
Sbjct: 142 IDLIITDHHMPPAVLPEAYAIINPKQEDCNFPNIEICGAEVAWYLVGAL------KDVCK 195

Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293
           LN+D+   L+L+A+A + D++ L  +NR  V  G+             + E         
Sbjct: 196 LNYDMSKFLELLAIAIIADMMELRDMNRMLVRMGICKLNASKRSAFCVIKEFYGKDK-FE 254

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            +++ ++I P IN+ GR+ ++      L +   +E       +   N +R+  E  + E 
Sbjct: 255 CDDISFLIAPLINSAGRMDDAMNSFNFLRAKSIEEAYDYLDTIIEFNNSRKEEERQLFEC 314

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           +   V       +   VI+  G++WH G++G++A+RL + F +P+   S  + G+  GS 
Sbjct: 315 SLKDVK------EDDEVIITWGEQWHEGVIGIVASRLAKHFAKPAIVFS-IDKGRAKGSA 367

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RS+   DI  ++  A  E +L   GGH  AAGLT+   N  +  +   K     +     
Sbjct: 368 RSVGKLDILSLI--ASHEDLLTSYGGHKGAAGLTLAPENLEKFKEEINKSCS-CLNMQEC 424

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531
               ++ G +  S ++  L+++LE   PYG  NP PVF   N  +++ R++     HL++
Sbjct: 425 KSSDELLGDIMPSEIDFELLEILEFYEPYGQKNPRPVFKIENAVVKNERLIGRDQNHLKL 484

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             + +D++TL+A+ F               G+ + V   +  N +RG    QL + + 
Sbjct: 485 ILQ-KDNKTLEALFFNFTRH-------VRVGEMVDVIFCVSKNSFRGLVTPQLLIREI 534


>gi|94269309|ref|ZP_01291429.1| RecJ exonuclease [delta proteobacterium MLMS-1]
 gi|93451269|gb|EAT02160.1| RecJ exonuclease [delta proteobacterium MLMS-1]
          Length = 551

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 169/559 (30%), Positives = 264/559 (47%), Gaps = 22/559 (3%)

Query: 38  AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            IP+ V  +L  R +        F+NPS+  L PDP +L     A+R +   +     I+
Sbjct: 4   NIPESVVALLWRRGLRDPAALDAFVNPSLADL-PDPDLLKGMAPASRLLADWLAKGAPIV 62

Query: 97  IFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK--FINEGAQLI 153
           I+ DYD DG  + AL+  +L        +  IP R+ DGYG +P L+       +   L+
Sbjct: 63  IYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRDGYGLHPHLLASVPVAAQRQPLL 122

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           ITVDCG T  +A+  AT  G  VI+ DHHQ   E   A A++NP++        +L   G
Sbjct: 123 ITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAAAAVLNPHQAGCSFPCPNLAGVG 182

Query: 214 VVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           V F +L+ + R L +           L   LDLVAL TV D+V + G NR  +  GL V 
Sbjct: 183 VAFYLLMGLRRRLVEQGSHRAAELPRLKDFLDLVALGTVADMVKVTGANRILIRAGLEVL 242

Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
           +    PG  AL     I+    AE++ + + P +NA GRIGE  +  +LLI DD  +   
Sbjct: 243 QGNQRPGPAALAAVAGITPG-YAEDISFSLAPRLNAAGRIGEPEIAFKLLICDDPGQAAA 301

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           LA +LD LN+ RR M   + +     + +   D+Q   +I+   ++WHPG++G+ A RL 
Sbjct: 302 LAGELDELNRQRRAMSDKIYQDVRQTISSNIADLQN--IILFAHEQWHPGVLGIAATRLA 359

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
            ++ RP+   +    G   GSGRS+ G D+   V+   E  +L   GGHA A G+++ + 
Sbjct: 360 LEYDRPAILCALTN-GVAKGSGRSVAGLDLLAAVAGCRE--LLAGYGGHAAALGVSMPKE 416

Query: 452 NFGRLCDFFQKFAHNIVPALITTP-VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
              +  +   +   + +P          +D      A+        +   P+G GNP P 
Sbjct: 417 VVAQFRERLNQQLISELPRARQERGEVDVDWFFADGAMEPGFTAAYQRLAPFGPGNPEPQ 476

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F     ++    VV   HL+ +++  D ++  AIAF          L  + G  +  T  
Sbjct: 477 FRIRG-RVGKATVVGSKHLRFSWQQAD-QSYNAIAFGRAD-----ALPLTSG-VVEFTFT 528

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           L  N+++G    QL+V + 
Sbjct: 529 LRRNFYQGRSSWQLKVSEL 547


>gi|237736662|ref|ZP_04567143.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420524|gb|EEO35571.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           mortiferum ATCC 9817]
          Length = 573

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 142/546 (26%), Positives = 263/546 (48%), Gaps = 20/546 (3%)

Query: 49  NRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107
           NR  S +    +F+NP I     +P           +I+     +EKI I+GDYDVDG  
Sbjct: 33  NRGFSDEKSVNEFINPEISDFR-NPFKFEKMASVVDKILAKKEKNEKIFIYGDYDVDGIT 91

Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167
           +   +++  S   ++ + YIP+R+ +GYG +   ++       +L+ITVD G  S + ++
Sbjct: 92  AAVFLVKVFSEIGIDVDYYIPNRMEEGYGLDKKAIDFMKKRNCKLVITVDTGVNSIEDVK 151

Query: 168 YATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227
           YA + GI+VIV DHH+   ++     L+   +L D     +L  AGV   V   +Y  L 
Sbjct: 152 YAESLGIEVIVTDHHKSTKDKEDEELLLLNPKLSDTYEFKYLSGAGVALKVAQGVYEKLN 211

Query: 228 QDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287
            D        L   +D+V + TV DVVP++  NR  + +GL +  +    GL  L++ + 
Sbjct: 212 AD-----MGKLYQYMDIVMIGTVADVVPMVDENRIIIKEGLKILSKTKVKGLMYLLKYLK 266

Query: 288 I-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
             +  I   ++ Y I P IN+ GRIG S +G+   + +D  E+  +  ++   N+ RR +
Sbjct: 267 FQNKEINTTDVSYFISPLINSLGRIGVSKMGADFFLKNDEFEIYNIIEEMKKSNKKRREL 326

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
           E A+ E+A+ K+  +  D +      +   +WHPG++G++++RL  K+  P   ++  + 
Sbjct: 327 EKAIYEEADHKI--KKMDKKSLKCAFLYSKKWHPGVIGVVSSRLSVKYNMPIALVALRD- 383

Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466
             G  S RS++G  +     F   +  LV+ GGH +A+G  V++ N   +   F++    
Sbjct: 384 NIGKASCRSVKGVSV--FNIFHTMKDKLVRFGGHDLASGFIVKQENLKEVERIFKENIDE 441

Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN- 525
            +       + KID  L    ++  L   +ES  P+G  N +P+F   +     I+    
Sbjct: 442 -IKVEQEEKILKIDMELPIEKIDENLFKAMESLAPFGLDNNHPLFIDKDLSFDYIKKFGV 500

Query: 526 -LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584
              H     + ++ +    +AF + G  + E  ++++ ++  +  +     ++G +  Q+
Sbjct: 501 NERHFNGIIK-KNGKNYHMVAFDM-GHKINE--LEAKIQKFDIVYYPEKVIYKGEEIIQI 556

Query: 585 RVLDAS 590
           R+ D  
Sbjct: 557 RIKDIK 562


>gi|206901516|ref|YP_002251309.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus
           thermophilum H-6-12]
 gi|206740619|gb|ACI19677.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus
           thermophilum H-6-12]
          Length = 824

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 151/592 (25%), Positives = 265/592 (44%), Gaps = 30/592 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74
            RW+ L  +E   +     ++  +  ++AR+L+NR +     AK FLNP I  L  DP +
Sbjct: 2   RRWILL-FEENKGQEEVFAKEIGVSPLLARLLLNRGIKDSLQAKRFLNPKIEDLY-DPFL 59

Query: 75  -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
              D +KA   +V+   +  K++IFGDYDVDG  +  +M R LS+   + + YIP R+ +
Sbjct: 60  YFPDLEKAMNFLVKLRDSKRKVLIFGDYDVDGITATTIMYRVLSNWGWDVSFYIPHRLEE 119

Query: 134 GYGPNPSLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           GYG     ++K +++     L+ITVDCG  S   ++Y    G++VIV DHH  +   IP 
Sbjct: 120 GYGLKEKSIKKALSQNEFVSLLITVDCGIKSRKEIEYLRKNGVEVIVTDHHIPEEGNIPE 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            AL+  N   +     ++   GV F  L  +   + +D            L+LV L T+ 
Sbjct: 180 -ALLVFNPYLNNYPYPYMAGVGVAFKFLKALGDFIGKDIYEEKGI-----LELVTLGTLG 233

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGG 309
           D++ L   NR  V  GL         G+K LI +V +     I  +++ + I P IN+ G
Sbjct: 234 DLMELKDENRILVKFGLEKFLNPDLVGIKTLIRKVGLDKNTIINTKDVIFNITPRINSIG 293

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R  E     RLL++D+ +E E+L  KLD  N+ RR     + E A+  +  +  +I+   
Sbjct: 294 RFKEVEEAIRLLLTDNVEEAEILCEKLDEFNRKRREEVERVYEIAKEMLREE--EIENNK 351

Query: 370 VIVVEGDRWHPG---IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
            + +    W      ++G++A+ L E++  P F +  +E    + SGR +E  ++   +S
Sbjct: 352 AVFLYNPLWGRDVGGVMGIVASMLVEEYNVP-FFLGRKEGDFVVFSGRGVEDVNLFDFIS 410

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
                  LV  GGH  A G ++   ++        K A+ +   +  TP  KID  ++  
Sbjct: 411 NL--SSYLVNFGGHRGAVGFSLFEKDYEIFKINAIKLANELWKDVDFTPKVKIDAEISLD 468

Query: 487 AVNIA----LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL-QMTFESQDSETL 541
            +        +  L+   P+G GN  P F   +  +     +      ++       + L
Sbjct: 469 KIKSENIGKFLSELDLLPPFGPGNEEPRFKISSTVIAYFEKMGNGGRYKIKIGDISGKVL 528

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
               F +    + E   +   + + +   +    ++G +     + +    E
Sbjct: 529 STPIFSIG---IEEDAFKESPQTLDIILRIEKEGYQGREYFNFYLEEWREAE 577


>gi|148926844|ref|ZP_01810523.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145844569|gb|EDK21676.1| putative single-stranded-DNA-specific exonuclease [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 503

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 144/523 (27%), Positives = 260/523 (49%), Gaps = 30/523 (5%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +P P  L D  KAA RI +A+  +EK+ I GDYDVDG  S  +M  F      +  + IP
Sbjct: 8   LPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIP 67

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  DGYG N  ++ +       LIITVD G  + +A +    + ID+I+ DHH  +   
Sbjct: 68  NRFKDGYGLNAEIINEL---DVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVL 124

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             A+A++NP + D    +  +C A V + ++  +  + +        +D+   L+L+A+A
Sbjct: 125 PDAFAIINPKQKDCDFPEIEICGAQVAWYLIAALKEVCKLK------YDMCKFLELLAIA 178

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            V D++ L  LNRA V +G+    +      +A+ +          +N+G++I P IN+ 
Sbjct: 179 IVADMMELRDLNRALVRRGIDHINKSKRAAFRAI-KHYYQKDKFALDNIGFLIAPLINSA 237

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ ++++    L + D  +      ++   N++R+  E  + E +  ++       +  
Sbjct: 238 GRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLFEDSLNQI------DEND 291

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           S IVV G  WH G++G++A+RL + F +P+F  S  E+    GS RS+   DI  ++S  
Sbjct: 292 SCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNEEHL-KGSARSVGKIDILALISK- 349

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
               IL   GGH  AAG+++   NF +  +  +K    I  +       +I G+L  S +
Sbjct: 350 -TNSILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISESEFL-DTDEILGILEPSEI 407

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAF 546
           +  ++++LES  P+G  NP P F   N  +++ +++     HL++   +++++T++A+ F
Sbjct: 408 DFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVL-TKENKTIEALFF 466

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                P          + + + G +  N +RG    Q  V + 
Sbjct: 467 NFDKEP-------ELNQNISLLGSISKNEFRGMVTPQFVVKEI 502


>gi|257461044|ref|ZP_05626142.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           gracilis RM3268]
 gi|257441418|gb|EEV16563.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           gracilis RM3268]
          Length = 526

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 146/531 (27%), Positives = 261/531 (49%), Gaps = 35/531 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +P P  L D  KAA RI  AI  +++I + GDYDVDG  S  +M  F +       + IP
Sbjct: 26  IPLPCDLKDTYKAALRIKTAIEENQRIAVVGDYDVDGIVSTVIMSDFFNQIGAEYVIKIP 85

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  DGYG N  ++ +   E   LIITVD G+++ +A +    +GID+I+ DHH      
Sbjct: 86  NRFTDGYGLNSEIIGEL--EDVDLIITVDNGTSATEAAEICAQKGIDLIITDHHMPPPVL 143

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             AYA++NP + D       +C A V + ++  +   L       +N+D+ S +D++ +A
Sbjct: 144 PRAYAIINPKQPDCTFPNIEICGAQVAWYLVGALKETLG------VNYDMASSMDILIIA 197

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            + D++ L  +NRA +  G+           KA+ +          +++ Y I P IN  
Sbjct: 198 IIADMMELRDMNRALLRFGIKRLNSSNRACFKAI-KEHYFKKHFEFDDISYTIAPLINCT 256

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ ++ +    L + + +E       ++ +N +R+  E ++ ++    V          
Sbjct: 257 GRMDDATMSYNFLCAKNIREANHYLETINSINNSRKEEEKSLYDEIVKSV------DPND 310

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
           +VIVV G +WH GI+G++A+RL + + +P+   S  +  +  GS RSI  FDI +++S  
Sbjct: 311 NVIVVWGPQWHEGIIGIVASRLSKTYKKPAIVFSVSDS-RAKGSARSIGKFDILELISS- 368

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID---GVLNA 485
            +  IL   GGH  AAG+ ++      L   F++  +  +     +     D   G L+A
Sbjct: 369 -QSEILTTFGGHKGAAGVGID----PALLQEFKRRVNERITPKDLSDFSAQDDLLGELDA 423

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543
           S ++  L+++LE   PYG  NP P+F     + ++IR +     H++M    ++  +++A
Sbjct: 424 SQIDFELLEILEFYEPYGQKNPRPLFCIKGARARNIREIGKEGKHIKMAL-DKNGGSVEA 482

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           + F           +   G+R+ V   +  N +RG+   +L + + +P E 
Sbjct: 483 LFFNYD-------FLPRAGERVDVIFTISKNNFRGTITPELIIKELAPSES 526


>gi|163814891|ref|ZP_02206279.1| hypothetical protein COPEUT_01042 [Coprococcus eutactus ATCC 27759]
 gi|158449830|gb|EDP26825.1| hypothetical protein COPEUT_01042 [Coprococcus eutactus ATCC 27759]
          Length = 630

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/619 (25%), Positives = 280/619 (45%), Gaps = 61/619 (9%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           +W  +  +        I +K  I  +VARV+ NR +   D    +LN     L+ DP ++
Sbjct: 19  KWTIMSKRADFA---EIGRKFGIDPVVARVITNRGICGDDNINMYLNGG-ADLLHDPGLM 74

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-----------AN 124
            D  +  R ++  + N  +I I  DYDVDG  S  +++  L                  +
Sbjct: 75  KDLPEGCRIVMDKLENGSRIRIISDYDVDGVTSNYILLLGLRKVWAQIHGARPEECEIVD 134

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
             IP RI DGYG    L++    +G   IIT D G  +++ ++YA   G+ VIV DHHQV
Sbjct: 135 YDIPHRIHDGYGIKNRLIDAAKADGVDTIITCDNGIAAFEQIKYAKTIGMTVIVTDHHQV 194

Query: 185 KSEE----------IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL 234
             +E           PA A+++  R+D       LC AGV    +  +YR+   D +   
Sbjct: 195 PYQENGDGTKTYTLPPADAVIDNQRVDCQYPFKGLCGAGVACKFIQYLYRLCGIDER--- 251

Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPIT 293
             ++    +++ LAT CD++ L+  NR +V   L   +   NPGL AL+     +   IT
Sbjct: 252 --EIQEFFEVLGLATNCDMMDLVDENRIFVKYALESLKDSRNPGLNALMRLSGKNEKKIT 309

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
             +LG++IGP INA GR+G++      L+  ++ + E  A +L  +N +R+ M    ++ 
Sbjct: 310 TYDLGFLIGPCINAAGRLGDARTSLEFLLEKNAAKAETKAAELIQINNDRKSMTENGVKL 369

Query: 354 AEAKVLTQCDDIQ-------QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
               +       +          VIV      H  +VG++A++LKE + RP    +  E 
Sbjct: 370 ITKMLEDATIAGEIGDTATLADHVIVAYIPDVHESVVGIIASKLKEAYSRPVMIFTDSEH 429

Query: 407 -GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
            G   GSGRSIE +++ + +S    +    + GGHAMAAG ++E    G L     +   
Sbjct: 430 AGILKGSGRSIESYNMYEHLSRV--KSYFREFGGHAMAAGFSIESSRLGELRRVLNEQCA 487

Query: 466 NIVPALITTPVFKIDGVLNASAV---NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
             +     TP  +ID  +    +   ++ + + L    PYG GN   +F   N  ++   
Sbjct: 488 --LTDEDITPKVRIDVGMPLQYLARQSMRITEQLYLLEPYGKGNRKALFGQANVPVRKAS 545

Query: 523 VVNLAH--LQMTFESQDSETLQAIAFR----------VYGTPLGEFLMQSRGKR--MHVT 568
           ++      L++  +  +++ ++AI F            +G    + ++  R  +  + + 
Sbjct: 546 ILGKNRNLLKLVLDIGENQYMEAIYFDPDEFVNNIKQWFGADECDKMLNGRPNKVVIDMV 605

Query: 569 GHLCVNYWRGSKRCQLRVL 587
            +  +N +R ++  Q+R+ 
Sbjct: 606 YYPEINEFRNTRNVQIRLE 624


>gi|94676928|ref|YP_588619.1| single-stranded-DNA-specific exonuclease RecJ [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220078|gb|ABF14237.1| single-stranded-DNA-specific exonuclease RecJ [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 575

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 166/570 (29%), Positives = 276/570 (48%), Gaps = 21/570 (3%)

Query: 32  AITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           +I  +  IP ++ R+ + R +        L      L  +        +AA  + +A+ +
Sbjct: 14  SILDEINIPILLKRIYIQRGIKNP---RELELKTCYLFTN-AQFNGIQQAAILLTKALRD 69

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGA 150
              IM+ GD+DVDGA S AL++  L    V   N  I +R  D YG N  ++EK  + GA
Sbjct: 70  KLSIMVVGDFDVDGATSTALVILALKQMGVEKINFLILNRFKDSYGLNTRVVEKVASSGA 129

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
           Q+I+TVD G +S+ A+  A  +GI V+VIDHH        A ++VNPN  +      +L 
Sbjct: 130 QIILTVDNGVSSHTAINLAVAKGIPVLVIDHHLPGQTLPNAVSIVNPNLKNCNFQSKNLA 189

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
           + GV F +++ +   L +      N      L  L DLVAL TV D+VPL   NR  V +
Sbjct: 190 SVGVAFYLMLALRMELCKSGWFDKNKIAVPKLAKLFDLVALGTVADMVPLDMNNRILVHQ 249

Query: 267 GLMVAR-RQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324
           G+ + R     PG++AL+E  NI+ + I A +LG+ I P +NA GR+ + +L   LL++D
Sbjct: 250 GINLIRTGCCRPGIRALVEISNINLTKICASDLGFYISPRLNAAGRLQDMSLSVELLLAD 309

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIV 383
           +     ++A KLD LN+ RRL+E  M  QA       +       S +++    WH G++
Sbjct: 310 NLSTARIIAAKLDRLNKERRLIEQKMFIQALNLCKQIENTKNGIPSGLLLYHQNWHQGVI 369

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHA 441
           G++A+++KE F RP   ++  ++    GS RS+    I  ++         +++  GGHA
Sbjct: 370 GIIASQIKEFFYRPVIILAPADNFLLKGSCRSVPSVHIYNLLQILDQLYPNMMLNFGGHA 429

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
           MAAGLT+E+       D F   A+ ++   +   +   DG L    ++I+   +L   GP
Sbjct: 430 MAAGLTIEQSKLSLFRDSFYSLANQLIKPSMLNKIIWSDGELVGKEISISTAKILREGGP 489

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQS 560
           +G    +P+F      + +  ++   HL++  +   +   +  I F +    L   L   
Sbjct: 490 WGVEFTDPLFDGIFC-ILNKMLIKKVHLKIKLQDISNGLIIDGIIFNINKIIL---LSIK 545

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 +   L +NY   + + QL +    
Sbjct: 546 TKTLYRIAYKLNINY--SNHQLQLLIQYIW 573


>gi|90413183|ref|ZP_01221179.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium profundum 3TCK]
 gi|90325874|gb|EAS42326.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium profundum 3TCK]
          Length = 481

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 157/483 (32%), Positives = 238/483 (49%), Gaps = 16/483 (3%)

Query: 118 HCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176
                N +  IP+R+ DGYG +P ++ +    GA++I+TVD G +S   +  A  +G+ V
Sbjct: 1   MLGCSNVDYLIPNRVEDGYGLSPEVVVQAEARGAEVIMTVDNGVSSIAGVAAAKAKGMQV 60

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--- 233
           +V DHH    E   A A+VNPN          LC  GV F +++ +   LR  N      
Sbjct: 61  LVTDHHLQGRELPIADAIVNPNLDVCTFPSKSLCGVGVAFYLMLALRAELRSINWFEQKG 120

Query: 234 -LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS- 290
               +L  LLDLVAL TV DVV L G NR  V +GL   R  +  PG++ALIE  N    
Sbjct: 121 IPVPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAGKCRPGIQALIEVANRDPA 180

Query: 291 PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM 350
            +   +LG+ +GP INA GR+ + + G  LL+ +  Q    +A +LD LNQ R+ +E  M
Sbjct: 181 RLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRMASELDGLNQTRKEIEHGM 240

Query: 351 LEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
            E+A A       + Q       +    WH G++G+LA+R+K+ + RP  A +   +G+ 
Sbjct: 241 KEEALAICERISFNQQDMPYGLALFQRDWHQGVIGILASRIKDLYHRPVIAFADAGEGEI 300

Query: 410 IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI 467
            GS RSI G  +  ++        G++VK GGHAMAAGLT+           F     + 
Sbjct: 301 KGSCRSIPGLHMRDVLDLIDTRNPGMIVKFGGHAMAAGLTIPEDQLSGFSKAFDDIVRSQ 360

Query: 468 VPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA 527
           +       +F  DG L A+ +NI   ++L + GP+G   P P F     +L   ++V   
Sbjct: 361 LDEDALKGIFLTDGELAANDLNIETAEVLRNGGPWGQQFPEPSFDGT-FRLLHQKLVGSK 419

Query: 528 HLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           HL+M  E       + AIAF V      +    +  +++ +   L VN +RG++  QL +
Sbjct: 420 HLKMMVEPINGGSVIDAIAFNVDLKSWPD----ASVQQVDLVYRLDVNEFRGNRSVQLMI 475

Query: 587 LDA 589
              
Sbjct: 476 EHL 478


>gi|146329653|ref|YP_001209501.1| DNA exonuclease RecJ [Dichelobacter nodosus VCS1703A]
 gi|146233123|gb|ABQ14101.1| DNA exonuclease RecJ [Dichelobacter nodosus VCS1703A]
          Length = 556

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 165/553 (29%), Positives = 258/553 (46%), Gaps = 28/553 (5%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             +V  +   R  + +         +R L+P P  + D +KAA+R++ AI   E I+IFG
Sbjct: 20  HALVRAIYAARVDNPEEVAK----PLRALLP-PDSVPDIEKAAQRLLTAIVQRESILIFG 74

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYDVDGA + AL +  +       + +IP+R   GYG     + K ++    L+ITVD G
Sbjct: 75  DYDVDGATATALCVSVIEQLGGKVDYFIPNRQRHGYGLTVRGL-KTLSTLPALVITVDNG 133

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
             S++A ++     + +++ DHHQ  +    A A+VNPNR +     G+L   GV F VL
Sbjct: 134 IRSFEAAEWLQAHNVALVITDHHQTDTTLPRAQAVVNPNRQEHHY-LGNLSGVGVAFYVL 192

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNPG 278
           +++ R L          DL S LDLVAL TV D VPL   NR  V  G+   R  Q N G
Sbjct: 193 LMLRR-LWYQQFGNFPVDLNSYLDLVALGTVADKVPLDRNNRILVAHGIARMRTGQSNLG 251

Query: 279 LKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           ++ALI   N +  +    ++ + + P +NA GR+ E + G  LL+S D Q     A  L+
Sbjct: 252 IQALIAVSNQTPEMMTTRDIDFSLAPILNAVGRLSEMSEGVALLLSADWQTACDNAQYLE 311

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
             N++R+ + + M  QA  ++         A +       WH GI+G++AARL +   RP
Sbjct: 312 RFNRSRKALTNEMERQAALQIN------PDAVIASAYQADWHEGIIGIVAARLSQTLARP 365

Query: 398 SFAISFEEDG-KGIGSGRSIEGFDIGKM--VSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
           +   +  +DG    GS RSI G DI ++   + A      ++ GGHAMAAG TV +  + 
Sbjct: 366 ALVATQSDDGLGIKGSMRSIAGVDIHRLLIAAVADLPSDCIQFGGHAMAAGFTVLKECYP 425

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
            L    ++     + A +       D  L    + ++    LE+  P+GAG P P F   
Sbjct: 426 LLLTALKQHFERQIGARVPEQPLYFDAELPIDLLQLSWAHFLENLEPWGAGFPPPQFCNR 485

Query: 515 NHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
              +   R +   H ++      + +   A  F               G  + V   L +
Sbjct: 486 -FIVADCRALGAGHTRLVLREPINGQLFDATWFFHKED-------LPSGTAVKVVYQLEI 537

Query: 574 NYWRGSKRCQLRV 586
           N + G +R  L +
Sbjct: 538 NRFFGDERLNLLI 550


>gi|260436018|ref|ZP_05789988.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. WH
           8109]
 gi|260413892|gb|EEX07188.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. WH
           8109]
          Length = 632

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 160/542 (29%), Positives = 265/542 (48%), Gaps = 20/542 (3%)

Query: 53  SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112
           S   A+ FL P    L P      D ++A  R+V A  + E++ I GDYD DG  S AL+
Sbjct: 41  STSEAESFLFPG--DLPPTRDHFPDLEQACTRLVTACRSRERVAICGDYDADGMTSTALL 98

Query: 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ 172
           +R L+         IP R+ +GYG NP ++++  ++G +L++TVD G  + +AL+ A + 
Sbjct: 99  LRALAPLGAEPEPAIPSRMEEGYGLNPVMVQRLYDDGVRLLVTVDNGVAAREALELAASL 158

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
            + VIV DHH + +E  P  AL++P    + S    L   G+ +++   +  +L +   +
Sbjct: 159 SMQVIVTDHHTIPAERPPMTALIHPATTPEGSPYRGLAGVGLAYVLAHAVADVLNKPEAI 218

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
            +        DL  + TV D+ PL+G NR+++++GL    R    G++AL         P
Sbjct: 219 RVAR------DLFCIGTVADMAPLVGANRSWLLEGLNHLHRSECKGVQALQRLAGLGERP 272

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           +TAE++G+ + P INA GR+GE  L   LL ++D      LA + D  N+ RR +  A+ 
Sbjct: 273 LTAEDIGFQLAPRINAVGRLGEPRLVVDLLTAEDPDSAMALARRCDDYNRQRRDLCDAIE 332

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
            +A A V  +  D    S +++    WH G++G++AARL E++ RP+  ++ + DG    
Sbjct: 333 AEAVALVEAESSD-ALPSFLLLAQSHWHHGVIGIVAARLMERYHRPTALLAGDGDGSLRA 391

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S R   GF + + +S      +L + GGH  A G TV+      L +     A   +   
Sbjct: 392 SVRGPIGFAVDRALSKC--SDLLTRFGGHPAAGGFTVKAEFVHALHERLCAEADGWLMTQ 449

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
                 + D +L    VN  L   L+S  P+G G+P P+F      ++  R +   HL +
Sbjct: 450 AQGRPVQPDALLQLKDVNWDLWRHLQSLAPFGIGHPKPLFWSRRVSVEDRRDLKGGHLAL 509

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           T    +SE  +AIA+R   +        +      V   + +N W+G +R QL +     
Sbjct: 510 TLRQGESER-RAIAWRWDPS-------AAVPACCDVAYSISINRWQGEQRLQLELKAIRA 561

Query: 592 VE 593
             
Sbjct: 562 HT 563


>gi|56419129|ref|YP_146447.1| single strand dnaspecific exonuclease [Geobacillus kaustophilus
           HTA426]
 gi|56378971|dbj|BAD74879.1| single strand DNAspecific exonuclease [Geobacillus kaustophilus
           HTA426]
          Length = 553

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 147/527 (27%), Positives = 243/527 (46%), Gaps = 22/527 (4%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCD 79
           L           + ++  I  ++   L    +   +    F+ P+I     DP ++ D  
Sbjct: 10  LEKHPNKALITYMARQFDIEPVLMHHLFIHGIDNCEKVSRFIFPTIDDFH-DPFLMNDMK 68

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           KA  RI++A+   EKI I+GDYDVDG  + A++ + L     + +  +P R  +GYG +P
Sbjct: 69  KAIIRIIKALTQKEKIFIYGDYDVDGMTATAILYKALKKFKADVHYRLPLR-SEGYGLSP 127

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
             MEK       LIITVD GS+++ A++ A  +G+DVIV DHH+V       YA +NP R
Sbjct: 128 KAMEKVPE-DTTLIITVDNGSSAHPAMEVAKRRGMDVIVTDHHEVLGPHPDCYAFINPKR 186

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
            D+     HL  AGV   V+  ++       K+P +  +   ++   L T+ D++PL G 
Sbjct: 187 HDNTYPFPHLAGAGVALKVVQALFMA----GKIPWDKHVYEFIEFATLGTIADLMPLKGE 242

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           NR     GL        P LK L E + I   + +  + + IGP  N+ GRIG+ N    
Sbjct: 243 NRIICKLGLQKMNYTPTPVLKKLFEMLRIK-YVDSSTISFQIGPIFNSSGRIGDPNQAVD 301

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           +L++    + ++ +  L  LN+ R+ M     ++ E +++      Q    ++V  D +H
Sbjct: 302 ILVNPLCAKADLYS--LITLNKKRQQMTKEQFQRIEEQIIQNQWYKQN---VIVVCDDFH 356

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            GI+GL+AA++  KF +P+  IS    G    S RS+   D   +         L K GG
Sbjct: 357 SGIIGLIAAKIANKFKKPAIVISLTGAG----SARSVNATDFSMINVIKKCSHFLTKYGG 412

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  AAG +++  +F  +  F +      +     TP  K    +      + + D L   
Sbjct: 413 HRAAAGFSIK-PDFDHIHAFREAIQLAALDEPPLTPKLKYISTIPLHQFPMHIFDDLGVL 471

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546
            P+G   P P+F      ++  +V    +  +   + D    +AIAF
Sbjct: 472 EPFGMSFPKPLFYCSPLVIKQFQVFGKNNEHLKLITNDK---KAIAF 515


>gi|269120922|ref|YP_003309099.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella
           termitidis ATCC 33386]
 gi|268614800|gb|ACZ09168.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella
           termitidis ATCC 33386]
          Length = 560

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 142/582 (24%), Positives = 265/582 (45%), Gaps = 33/582 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           RW  L   +   ++   +++     ++  +L+NR ++  +    FLNPS+   + DP + 
Sbjct: 2   RWELLNYNDEYIQSK--SKEFHTDKLITELLLNRGITNKEDVDKFLNPSMEN-INDPFLF 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D ++   RI+ A  N EKI I+GDYDVDG +  A ++  L +  +N + +I +R+ +G 
Sbjct: 59  EDMERIVERIIIARKNKEKIFIYGDYDVDGISGTAYLIIVLRNLGINIDYFIQNRVHEGS 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
             N   +       A+L+ITVD    S + ++  T  GID+I+ DHH+  ++       +
Sbjct: 119 KINKHFVNYIKKRNAKLVITVDTSFGSTEEIELLTKNGIDLIITDHHRQTNKLKLDVKTI 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP          HL  +G+ + +   +Y  L    K+     L   +D+V + TV DVVP
Sbjct: 179 NPKI-SKTYPFKHLSGSGMAYKLADAVYERLGVSKKI-----LHDYMDIVMIGTVADVVP 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314
           +   NR  + +GL   R+    GL+ LI  + +++  I   ++G+ I P +NA GRI  S
Sbjct: 233 MTDENRFIIKQGLANLRKTKVKGLEYLIVYLKLNAYSINTSDIGFYIAPMLNALGRIDSS 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            +     I  D   +  +  ++   N+ RR +E  +  + E K+       ++   I ++
Sbjct: 293 KMVVDFYIEKDDFRIFNIIEEMKRANKIRRYLEINIYNEIEEKIAKM---REKPKYIFMK 349

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
             +WH G+ G++++RL  K+  P   IS  ++G G  S RS+EG +I  ++         
Sbjct: 350 SKKWHSGVTGVVSSRLSLKYNIPVIIIS-IKNGYGKASCRSVEGLNIFDILKE--ISHKF 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH +AAG  V      ++  + +   + +  + I      ID  L+   +N  L+ 
Sbjct: 407 ERFGGHDLAAGFLVTEKVLFQIEKYLKNKLYRLNKSDIEKKFL-IDSYLSIENINKTLVK 465

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            +    P+G  N  P F   N  L +         H +     + ++ L  I + +    
Sbjct: 466 EINKLSPFGLDNQEPNFTDNNVTLLNYTKFGVDSRHFKGMVV-KGNKKLPVIGYNLGD-- 522

Query: 553 LGEFLMQSRGKRMHVTGHLCV----NYWRGSKRCQLRVLDAS 590
             +   ++ GK++ +     +    N +      +L++ D  
Sbjct: 523 --KIDTKNSGKKIEILYTPVLKYGKNDFF----IELKLKDFK 558


>gi|30961856|gb|AAP40011.1| single-stranded DNA-specific exonuclease [Citrobacter freundii]
          Length = 483

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 160/487 (32%), Positives = 246/487 (50%), Gaps = 16/487 (3%)

Query: 117 SHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175
                 N +  +P+R  DGYG +P ++++    GAQLI+TVD G +S+  +++A   GI 
Sbjct: 2   RALGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARTLGIP 61

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL- 234
           VIV DHH        A A++NPN  D       L   GV F +++ +   LR        
Sbjct: 62  VIVTDHHLPGDTLPGAEAIINPNLHDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDER 121

Query: 235 ---NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS 290
                +L  LLDLVAL TV DVVPL   NR    +GL   R  +  PG+KAL+E  N   
Sbjct: 122 GIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDP 181

Query: 291 -PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
             + A +LG+ +GP +NA GR+ + ++G  LL+ D+  E  +LA +LD LNQ R+ +E  
Sbjct: 182 LKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQG 241

Query: 350 MLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK 408
           M  +A       +         + +    WH G+VG+LA+R+KE+F RP  A +   DG 
Sbjct: 242 MQAEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT 301

Query: 409 GIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466
             GSGRSI+G  +   +        G+++K GGHAMAAGL++E   F R    F +    
Sbjct: 302 LKGSGRSIQGLHMRDALERLDTLHPGMILKFGGHAMAAGLSLEEAQFERFQQRFGELVTE 361

Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526
            +   +       DG L+A+ + + +  ML  AGP+G   P P+F   + +L   R+V  
Sbjct: 362 WLDPALLQGEVVSDGALSAAEMTMEVAQMLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGE 420

Query: 527 AHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
            HL++  E       L  IAF V  T   +    +  + + +   L +N +RG++  Q+ 
Sbjct: 421 RHLKVMVEPVGGGPLLDGIAFNVDTTCWPD----NGVREVQLAYKLDINEFRGNRSLQII 476

Query: 586 VLDASPV 592
           + +  P+
Sbjct: 477 IDNIWPL 483


>gi|42523690|ref|NP_969070.1| single-strand DNA-specific exonuclease [Bdellovibrio bacteriovorus
           HD100]
 gi|39575897|emb|CAE80063.1| single-strand DNA-specific exonuclease [Bdellovibrio bacteriovorus
           HD100]
          Length = 575

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 156/581 (26%), Positives = 264/581 (45%), Gaps = 15/581 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76
           W     +        +  +   P ++ +VL  R  +     +  L P +  L  DPL+L 
Sbjct: 5   WTLRESENEPVIPSNVEGQW--PKLITKVLAARGFAEASHVEKLLFPKLADL-KDPLVLK 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGY 135
              +A  R+ QA  N EKI I+ D+D+DG + +AL+   +      +   Y P R+ +GY
Sbjct: 62  GMSQALERLGQAYLNKEKICIYADFDLDGTSGLALLKTGMLALGFPDVLHYQPKRLAEGY 121

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   +E+   +G  LIITVD G T++ A+  A   G+DVI+ DHH        A+ +V
Sbjct: 122 GFHAHAVEELKKQGVSLIITVDVGITAHAAIDKANELGVDVILTDHHLPADTIPSAFVVV 181

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD-LLSLLDLVALATVCDVV 254
           NPN+ D  SG G+LC AGV F +L  + R      ++P N   L  +LD   + T+ D+V
Sbjct: 182 NPNQGDCPSGLGYLCGAGVAFYLLRGLKRHFHDHPQLPKNNWDLKEVLDYFTIGTLTDMV 241

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
           PL+  NR  V  GL+        GL+AL+E ++    P+T++++     P +NA  R+  
Sbjct: 242 PLVDDNRVLVKHGLVKLAETKRAGLRALLEELDLTGRPLTSQDVAIRFAPKLNALSRMES 301

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
             L   + + DD  +   +  ++   N  R  ++      AEA+             + V
Sbjct: 302 GILPIDIFLLDDPSQARDMVRQVMKNNSTRVQLQGD----AEAEAQQLLQGWPHQDFVFV 357

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
               +H G++GL+A +L + + +P+F  +  +DG  +GS R  +G +   + + +  + +
Sbjct: 358 ASRNFHRGVLGLIATKLTQVYNKPAFVGAVGDDGMIVGSARLPQGQEACLVEAMSSAQEL 417

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH+ AAG  +                 + +           D     S V+ AL+
Sbjct: 418 LSRFGGHSAAAGFEIAETKVSTFVGKLADHFSD-LREKPKPLEIFYDVEAGLSEVSEALM 476

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTP 552
              +  GP+GAG   P+  F N ++ S R +   HL++         + +A+ F    TP
Sbjct: 477 KWYDFVGPFGAGFSIPLIHFTNVQVLSKRELKGGHLRLKIADADGGASAEALLF--TPTP 534

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                + +     HV G L  NY+ G K  Q+ + D     
Sbjct: 535 RQLDTLTNVPGFYHVLGELQWNYFAGQKTVQILIRDLKAAT 575


>gi|322435270|ref|YP_004217482.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp.
           MP5ACTX9]
 gi|321162997|gb|ADW68702.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp.
           MP5ACTX9]
          Length = 606

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 168/603 (27%), Positives = 270/603 (44%), Gaps = 33/603 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
            RWV            A+  +   P+ +A +L +R ++               + DPL L
Sbjct: 5   KRWVVTP--PVSAATAALRSQLDCPEPIASLLASRGITDPKP---FLDPSLDDLLDPLTL 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-----VNANMYIPDR 130
                A  RI QA+   EKI+I+GDYDVDG  +  L+   +   +          ++P R
Sbjct: 60  LGMTAAVARIEQAVRQGEKILIYGDYDVDGTVATVLLKTAIERTAAPGKPAQVTYHVPHR 119

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE--E 188
           I +GYG   +++    N G  L+I+VD G  ++ A   A   G+D+IV DHH        
Sbjct: 120 IREGYGMQTNVLGLAANSGITLVISVDTGIRAFAAAAEARALGLDLIVTDHHLPDGAAGI 179

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLV 245
             A A++NP +        +LC A V F +   + +   Q            + S L LV
Sbjct: 180 PDALAVINPAQPGCPYLNKNLCGAAVAFKLAQALLQNAAQTPDQQLRLKQTIIPSFLKLV 239

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGP 303
           A+AT+ D V L G NRA    GL        PGL+AL++     +  P TA  +G+ + P
Sbjct: 240 AIATIADSVSLTGENRAIAWLGLRELANPIQPGLRALMQVAKLPLDRPPTATEVGFRLAP 299

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV--LTQ 361
            INA GR+  ++    L ++ DS     LA KLD LNQ+RR  E+A LE  E ++  +T 
Sbjct: 300 RINAAGRMDVASDVVELFLTRDSHIARELAQKLDDLNQDRRATEAAALEAIEMQLLTMTS 359

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
            + +    VIV+    WH G++G+LA+R+ ++ GRP+  ++  + G   GSGRSI GF +
Sbjct: 360 PEGLYAPEVIVLSHPEWHRGVLGILASRVVDRTGRPALVMTESD-GDAHGSGRSIAGFHL 418

Query: 422 GKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
              ++   +       + GGHA A G ++       L D  +  + +++   +  P    
Sbjct: 419 LDALTAIHDIDATLFTRFGGHAHAVGFSLPTTRLPLLRDRIKLHSTSLLIQEMLIPEIVC 478

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDS 538
           D  L  + +   L   ++   P+G   P PVF   N  L + IR++   H+ +   S   
Sbjct: 479 DLELMQADLTPDLCQWIDRCAPFGNAAPEPVFLTRNLILSAPIRIIKERHICIPLVSATG 538

Query: 539 ETLQAIAFRVYGTPLGE----FLMQSRGKRMHVTGHLCVN---YWRGSKRCQLRVLDASP 591
            +L A+ +    TP             G  +     L  N    + G    +L ++D +P
Sbjct: 539 NSLSAMGWSRSSTPDWPTRCAAFDLRPGSAIDAVFRLRENKHPQYGG---VELELIDLAP 595

Query: 592 VEG 594
            + 
Sbjct: 596 AQS 598


>gi|154686903|ref|YP_001422064.1| YrvE [Bacillus amyloliquefaciens FZB42]
 gi|154352754|gb|ABS74833.1| YrvE [Bacillus amyloliquefaciens FZB42]
          Length = 461

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 228/470 (48%), Gaps = 22/470 (4%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
            S  RW     Q    +  ++T++  I  +VA +LV R     + A+ FL+        D
Sbjct: 3   ASKMRWEIQ--QPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P  L    +A  RI  A+   E IMI+GDYD DG  S ++M+  L   S + + YIPDR 
Sbjct: 60  PYELKGMREAVDRIKLAVSQGEPIMIYGDYDADGVTSTSVMLTALRQLSADVDFYIPDRF 119

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYGPN          G  LIITVD G  +    + A   G+DVI+ DHH+   E    
Sbjct: 120 TEGYGPNEQAFRSIKERGFSLIITVDTGIAAVQEAEVAKELGLDVIITDHHEPGPELPDV 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P +         L   GV F +   +   L +           ++LDL A+ TV 
Sbjct: 180 FAIIHPKQPGCGYPFKELAGVGVAFKLAHALTGSLPE-----------AMLDLAAIGTVA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310
           D+VPL   NR     G+   R    PGLKALI+           E +G+ + P +NA GR
Sbjct: 229 DLVPLHDENRLIASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGR 288

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           I +++    LL+++D  E E LA  +D LN+ R+ M   M E+A   V  Q       S 
Sbjct: 289 IEQADPAVHLLMTEDQFEAEELASDIDRLNKERQKMVKTMTEEAVEMVQQQGG---NPSA 345

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAV 429
           IVV    W+PG+VG++A++L E+F RP+  +  + E G   GS RSI GF++    S + 
Sbjct: 346 IVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNL--FTSLSQ 403

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
              IL   GGH MAAG+T++  +   L D   + A   +      PV ++
Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVAELRDRLNQMAEETLTEEDFIPVQEV 453


>gi|34556668|ref|NP_906483.1| putative single-stranded-DNA-specific exonuclease [Wolinella
           succinogenes DSM 1740]
 gi|34482382|emb|CAE09383.1| PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE EC 3.1 [Wolinella
           succinogenes]
          Length = 534

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 147/556 (26%), Positives = 261/556 (46%), Gaps = 41/556 (7%)

Query: 40  PDIVAR-----VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           P ++ +     +L  R  + D    F    ++ L P P  L    +A   I++A+    +
Sbjct: 7   PPLLGKREIESILSQR-FAKD---RF--CRLKDL-PSPEKLHGIPQACDLIIEAMQQKRR 59

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           I++ GDYDVDG  S A+M+ F    S      IP+R  DGYG +P+L+E+       LII
Sbjct: 60  IVVIGDYDVDGIVSTAIMVDFFHRLSYPITSVIPNRFCDGYGLSPALIERL---ETDLII 116

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  +++A +    +GI +I+ DHH    E   A  ++NP        Q  +C A V
Sbjct: 117 TVDNGIMAHEAAKICQERGISLIITDHHTPPLELPCAKVIINPKLSCCSFPQKEICGASV 176

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            + +   +        ++    D+   LDL+ALA + DV+PL+ +NR  V +GL    R 
Sbjct: 177 AWYLCAAL------KGRLEAKIDMGEFLDLLALAIIADVMPLVEVNRLLVRQGLKEMARS 230

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
                  L E++   S  + E++ ++I P +N+ GR+ +++L    L+SD   E      
Sbjct: 231 NRAAFVVLKEKLR-KSHFSGEDVAFLIAPLLNSAGRMEDASLSLEFLLSDSILEAGEKFD 289

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           +L  LN  R+  ES + E+A  ++    + +      +  G+ WH G++G++A+RL +++
Sbjct: 290 RLCALNCLRKETESRLFEEALGQIDLCGEAL------LAYGEDWHEGVLGIVASRLTDRY 343

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
            +P+F ++ +E G   GS RS+   D+ +++  +    +L++ GGH  AAG+ + R NF 
Sbjct: 344 KKPAFILTQKE-GSLKGSARSVGELDLVRLLQKSHH--LLLRYGGHKGAAGIQLRRENFE 400

Query: 455 RLCDFFQKFAHNIVPA-LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                 ++    +           +  G +   +V+  L+D+LE   PYG GNP P F  
Sbjct: 401 SFKQAIEEELSRLKERIEWRCEGEECLGEIALESVDAELLDILERFEPYGEGNPKPRFFC 460

Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
              ++   ++V     H  +  ++      +AIAFR       +    +    +     L
Sbjct: 461 KEARVCRYKIVGAEKNHTSLVLKNPSGNERKAIAFR-------QVYEFAPLASISCLFSL 513

Query: 572 CVNYWRGSKRCQLRVL 587
             + +      QL + 
Sbjct: 514 SRDIFSAESIPQLIIE 529


>gi|148242584|ref|YP_001227741.1| single-stranded DNA-specific exonuclease [Synechococcus sp. RCC307]
 gi|147850894|emb|CAK28388.1| Single-stranded DNA-specific exonuclease [Synechococcus sp. RCC307]
          Length = 616

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 159/565 (28%), Positives = 272/565 (48%), Gaps = 28/565 (4%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL---ILTDCDKAARRIVQA 88
           + Q  A+P  +  VL  R V S    +  L P      P P       D + A +R++QA
Sbjct: 6   LPQSLALPPALVAVLQRRGVQSHQELQSLLQPD-----PAPEAKAHFPDLEIAVQRLLQA 60

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
               + + + GDYD DG  S AL++  LS         IP R  +GYG N +++E+   +
Sbjct: 61  CREGQALAVCGDYDADGMTSTALLVGVLSRLGAKPQAAIPSRQSEGYGLNAAMVERLAEQ 120

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
           G +L++TVD G ++ +AL+ A   G++VIV DHH +  +  P  AL++P      S    
Sbjct: 121 GVKLLVTVDNGISAREALERAEGLGLEVIVTDHHTIPPQRPPLLALLHPALTPPSSPYRG 180

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           L   G+ +++   +   LR          L + LDL  + T+ D+ PL G+NR ++ +GL
Sbjct: 181 LAGVGLAYVLAAAVAERLR------NPQALRTALDLFCIGTIADMAPLTGVNRRWLQEGL 234

Query: 269 MVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
               R   PGL+AL E       PI ++ +G+ + P +NA GR+ +  L   LL + D+ 
Sbjct: 235 PQLHRSLLPGLRALAELAGLEDRPIDSQGVGFRLAPRLNAVGRLADPQLAVELLTTADAD 294

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
               LA + + LN+ RR +   +  +A A V  + D  Q+ + +++  + WH G++G++A
Sbjct: 295 RALELAERCEQLNRQRRELCDGIEAEANALV--EADGDQRPAFLLLAQNHWHHGVIGIVA 352

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447
           ARL E++G P   ++ E +G+   S R+ EGF +   +       +L + GGH  A G T
Sbjct: 353 ARLVERWGLPVALLAGEGNGRLRSSVRAPEGFAVDAALQAC--ADLLERFGGHPAAGGFT 410

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           V+      L +     A++ +       V + + +L    ++   +  L    P+GA NP
Sbjct: 411 VQATQVAALHERLNGLANDWLAGREHALVVRPEALLPLEQIDRDFLQQLRRLEPFGAANP 470

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
           +P+F   + K++  R++   HL +        +L AIA+R  G        +     + +
Sbjct: 471 SPLFWARHCKVKRQRLLRGGHLLLELAVPTG-SLSAIAWRWSG-------PEPSSPTLDL 522

Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592
              L  ++W+G  R QL +    P 
Sbjct: 523 AFRLKEDHWQGQPRLQLELEALRPA 547


>gi|223038443|ref|ZP_03608737.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter rectus
           RM3267]
 gi|222880300|gb|EEF15387.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter rectus
           RM3267]
          Length = 523

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 145/550 (26%), Positives = 260/550 (47%), Gaps = 37/550 (6%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           +  +L  R       +  ++  +  + P P  L D  K A RI +AI  +EKI+I GDYD
Sbjct: 7   IKELLSRR------FEKDIHKKLSEI-PTPDALKDVFKGAERIKRAIEQNEKIVIVGDYD 59

Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
           VDG  +  +M  F     V    + IP+R  DGYG NP ++E+  +  A LI+TVD G +
Sbjct: 60  VDGVIASVIMAEFFDDLGVSEYFVRIPNRFSDGYGLNPQIVEEIAD--AGLIVTVDNGIS 117

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           + DA Q    +GID+I+ DHH        AYA++NP + D       +C A V + ++  
Sbjct: 118 ANDAAQICKQKGIDLIITDHHMPPDVLPEAYAIINPKQKDCPFPNVEICGAQVAWYLVGA 177

Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281
           +  + R +      +D+   LDL+A+A + D++ L  LNR  V  G+            A
Sbjct: 178 LKDVCRIN------YDMGKFLDLLAIAIIADMMELRDLNRILVKLGVNRLNSSRRAAFAA 231

Query: 282 LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
           + ++         +++ ++I P IN+ GR+ ++++    L + +          +   N 
Sbjct: 232 I-KQFYAKDKFECDDISFLIAPLINSSGRMDDASVSFEFLRAKNIDRACECLDTIVSFNN 290

Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401
           +R+  E  + E +   V       +   +IV  G  WH G++G++A+RL ++F +P+   
Sbjct: 291 SRKEEERTLFECSLKDVR------EDEQIIVTWGRGWHEGVIGIVASRLAKQFKKPAIVF 344

Query: 402 SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
           S  ++ +  GS RS+   DI  ++  A  E +L   GGH  AAG+ ++  N         
Sbjct: 345 S-IDENRAKGSARSVGKLDILSLI--ASHENLLAGYGGHKGAAGIVIDPANLEAFKTAIN 401

Query: 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI 521
                ++     +   +  G ++A  V+  L+++LE   PYG  NP P+F   +  +++ 
Sbjct: 402 GSC-MLMDLHEFSAFDEPLGEIDAGEVDFELLEILEYFEPYGQKNPRPLFEIKSAVVKNK 460

Query: 522 RVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
           +++     HL++  + +D + L+A+ F     P         G+ + +   +  N +RG 
Sbjct: 461 KLIGREQNHLKLILQ-KDGKCLEALFFNFTREP-------HAGESIDLVFSVSKNSFRGL 512

Query: 580 KRCQLRVLDA 589
              QL V + 
Sbjct: 513 VTPQLLVKEI 522


>gi|332531460|ref|ZP_08407364.1| single-stranded-DNA-specific exonuclease RecJ [Hylemonella gracilis
           ATCC 19624]
 gi|332039129|gb|EGI75551.1| single-stranded-DNA-specific exonuclease RecJ [Hylemonella gracilis
           ATCC 19624]
          Length = 610

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 176/616 (28%), Positives = 269/616 (43%), Gaps = 63/616 (10%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84
           +   R     ++  +  ++AR+   R V        L+ ++  L+P P  L    +AA  
Sbjct: 7   DVPPRVAWALEQAGVHPLLARLYAARGVRDKEE---LDDALARLLP-PTTLKGTAEAAIL 62

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143
           +  AI   +++ I  DYD DGA + A+ +R L      + +  +PDR+VDGYG    +  
Sbjct: 63  LADAIAADQRLCIVADYDCDGATACAVGIRGLRMLGARHVHYIVPDRVVDGYGLTAPISR 122

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
           +  + GA L+ITVD G  S + +  A   G+ V+V DHH   +E   A  +VNPN+  D 
Sbjct: 123 RVKDSGADLLITVDNGIASMEGVALARELGMRVLVTDHHLPAAELPQADVIVNPNQPGDA 182

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDN--KVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                L   GV+F VL+ +   LR            L +LL LVAL TV DVV L   NR
Sbjct: 183 FESKSLAGVGVMFYVLLALRAELRARGVLDPATQPKLDALLPLVALGTVADVVKLDANNR 242

Query: 262 AYVVKGLMVARRQGNPG-LKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319
             V +GL   R    P  L+AL +  +      +A + G+ +GP INA GR+ +  LG  
Sbjct: 243 RLVAQGLKRIRAGHMPEGLRALFDVASRKPAQASAFDFGFALGPRINAAGRLADMTLGIE 302

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE---AKVLTQCDDIQQASVI----- 371
           LL++DD    + LA  LD +N+ RR +E  M  QA     ++  +    + +        
Sbjct: 303 LLLTDDVGRADELARMLDGINRERREIEGEMRAQALEIVEQIFARRGATEPSPGRPKTVS 362

Query: 372 -------------------------------VVEGDRWHPGIVGLLAARLKEKFGRPSFA 400
                                           V    +H G+VG++AARLK+K  RPSF 
Sbjct: 363 PTGPNHAQDLPATGGSEDAGVPSVGANISALCVFDPDFHEGVVGIVAARLKDKLHRPSFV 422

Query: 401 I----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFG 454
                +   +G+  GSGRSI GF +   +        G+L++ GGHAMAAG T+   +F 
Sbjct: 423 FAASRAPGHEGELKGSGRSIPGFHLRDALDLVSKRHPGVLLRFGGHAMAAGCTIAEAHFE 482

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
                  + A   + A   T   + DG L A      ++D L     +G G   P F   
Sbjct: 483 VFERALDEVAREWLDAATLTRRIETDGALPAEYRRTDVVDALAR-EVWGQGFAPPTF-SE 540

Query: 515 NHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
             ++ S R+V   HL +    Q  + +  I F           +     R+ +   L  +
Sbjct: 541 EVEVLSQRLVAEKHLALKLRHQ-GQPVDGIWFGRAE------PLPPSHSRVKLAFRLEAD 593

Query: 575 YWRGSKRCQLRVLDAS 590
            W+G +R +  V  A 
Sbjct: 594 EWQGVRRLRFLVEGAE 609


>gi|262037371|ref|ZP_06010836.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           goodfellowii F0264]
 gi|261748628|gb|EEY36002.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           goodfellowii F0264]
          Length = 568

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 142/580 (24%), Positives = 257/580 (44%), Gaps = 29/580 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
            W               + +    +++ R+L+NR +S  +  + FLN S   L+  P ++
Sbjct: 2   NWEMKNYDRDYLAFK--SGEFGESELITRLLLNRGISSKEEVEKFLNSSENDLL-SPFLI 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + D+   RI++A  N EK++I+GDYDVDG ++ A ++       +N + YIP+R  +G 
Sbjct: 59  ENMDEVTERILKAKKNREKVIIYGDYDVDGISAAAYLVIVFRKLGMNVDYYIPNRAHEGV 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G N +L++  I   A L ITVD    SY+ +       ID+I+ DHH+   E        
Sbjct: 119 GINSNLIKYLIKRNAGLFITVDTNIGSYEEVMMLKRNNIDIIITDHHRQTEEIKNFNIPT 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
              ++ +     +L  +GV F +   +Y     + K+     L   LD+V + TV DVVP
Sbjct: 179 INPKIGNNYPNKNLSGSGVAFKLADAVYEKCGVNKKI-----LYDYLDIVMIGTVADVVP 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           +   NR  + KGL   R+    G+K ++  + I+   IT  ++G+ I P  NA GRI  S
Sbjct: 234 MTDENRFIIKKGLYNLRKTKIKGMKYILNYLRINPNNITTSDVGFYIAPIFNALGRIDNS 293

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            +     I +D  +L  +  ++   N+ RR +E  +      ++  +   + +   I ++
Sbjct: 294 KMVVEFFIEEDDFKLFSIIEEMKKANKIRRYLEIEI----YNEIEEKIQRLNKPKYIFMK 349

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
             +WH G++G++ +R+  K+  P   +S  ++G G  S RSIEG +I             
Sbjct: 350 SRKWHSGVIGVVCSRISIKYNIPVILVS-IKNGYGKASCRSIEGLNI--FDMLKETSDKF 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH +AAG  V       +  + +K       + I   V  ID VLN   +N + + 
Sbjct: 407 ERFGGHDLAAGFLVSEKYLKEIEIYLKKRLVTANKSNI-EKVLYIDSVLNIEQINKSKVL 465

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPL 553
            +    P+G  N  P F     K  S     + +     F  ++   +  I + +     
Sbjct: 466 DINRLSPFGLDNQEPNFVDKGIKFISFTKFGVNNRHFKGFIKKNDRIISVIGYNLGH--- 522

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLRVLDAS 590
            +   ++  K+  +        ++  +     +L++ D  
Sbjct: 523 -KLKFKNINKKYEIVYTPS---FKSVRTDLFIELKLKDFR 558


>gi|218901966|ref|YP_002449800.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH820]
 gi|218537227|gb|ACK89625.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH820]
          Length = 559

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 154/545 (28%), Positives = 236/545 (43%), Gaps = 30/545 (5%)

Query: 11  CSISGFRW----VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65
            S SG  W                L + +   I  I    L        +  + FL P+ 
Sbjct: 7   SSTSGK-WIPHIQMPHTPPNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNW 65

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
                 P +L D  KA  RI +AI N E IMIFGDYD DG  S  L+ + L   + N  +
Sbjct: 66  EH-CHSPFLLQDMKKAVYRIFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLNANVTV 124

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
            +P R  +GYG +  +M +  +    LIITVD GS++++A+Q A  +G+DVIV DHH + 
Sbjct: 125 RLPIR-SEGYGLSAKVMNELPS-NISLIITVDNGSSAHEAMQVAKQKGVDVIVTDHHDIL 182

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                 YA +NP R DD      L  AGV   V+  ++  ++Q    P       L++L 
Sbjct: 183 QGYPDCYAFINPKRNDDTYPFPFLAGAGVALKVVQALFETIKQ----PFLKYCSELIELA 238

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
            + T+ D++PL   NR     GL       +P LK L + + I + + +  +G+ IGP  
Sbjct: 239 TIGTIADLMPLKDENRIICSYGLKQMNSNPSPALKTLFKLLKIKT-VDSSTIGFQIGPLF 297

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GRI + N+   +L ++++ + +    +L  +N  R+ M       AE  +       
Sbjct: 298 NATGRIADPNITGEMLRNNETDQAKWT--ELLCINNQRKQMTKEQFLIAEETIFQDQLHK 355

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+      +HPGI+GL+++R+ EK+ +PS  IS    G    S RS+   D   + 
Sbjct: 356 DNVIVVW---GDFHPGIIGLISSRISEKYKKPSIVISNTGTG----SARSVNKTDFSIVK 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                   L K GGH  AAGL++       L  F               P       L  
Sbjct: 409 VIQDCRDYLKKYGGHRAAAGLSIPMKEQHLLL-FRSAIQEAAKTQTCLIPPTYYLSKLPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL------QMTFESQDSE 539
              +  L   L +  P+G  NP P+F   N K   ++++   HL      +  F  Q  +
Sbjct: 468 DKFSEQLFRDLYTLEPFGMENPKPIFLSQNTKPSFVKMLGEDHLLLGISSRCVFGFQKGD 527

Query: 540 TLQAI 544
             + I
Sbjct: 528 LYEQI 532


>gi|118595102|ref|ZP_01552449.1| exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease
           [Methylophilales bacterium HTCC2181]
 gi|118440880|gb|EAV47507.1| exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease
           [Methylophilales bacterium HTCC2181]
          Length = 559

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 163/558 (29%), Positives = 269/558 (48%), Gaps = 25/558 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +   +A +L  RN+       +    ++ L+P P  L   +  A  + Q I   +KI+I
Sbjct: 20  GVDQHLASILAARNIGSIAEIHY---DLKNLIP-PNRLYSLEATAVFLHQCIKKQKKILI 75

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
            GDYD DGA + A+ +  L     N +  +P+R   GYG    ++++ + +   +IITVD
Sbjct: 76  IGDYDADGATATAVAVLGLRKFLANVDFLVPNRFEYGYGLTIGIVKEALKKTPDVIITVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S + +Q+A +  IDVIV DHH    +   A  +VNPN+ +       LC  GVVF 
Sbjct: 136 NGIASIEGVQFARDNNIDVIVTDHHLPADQIPNANFIVNPNQKNCSFSSKSLCGVGVVFY 195

Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQ 274
           +L+ +  + R+ N+       +L  L+DLV L TV D+VPL   NR  V  G+    R  
Sbjct: 196 LLMALRAVFREANEFIEIQEPNLFDLIDLVCLGTVADLVPLDFNNRILVHHGMKKIKRNS 255

Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
            N G++A+ +  N S S +   ++ + I P +NA GR+ + ++G + L+S   QE E+ A
Sbjct: 256 CNFGIQAIAKLSNKSLSHLKTSDISFSIAPKLNAAGRLDDMSIGIKCLLSQSLQEAEVFA 315

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           ++L  LN  R+ +E  M E A   +     D ++   I +  + WH G++G+LA+R+KEK
Sbjct: 316 IELIKLNSQRKEIEVEMKEDALKHI---IFDEEKNYSICLFDESWHQGVIGILASRIKEK 372

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451
           + RP+   + + +G   GSGRSI GF +   + F       +++  GGHAMA+GLT++ V
Sbjct: 373 YFRPTIIFAKDANGILKGSGRSIPGFHLRDALDFISKKHSDLIITFGGHAMASGLTIDEV 432

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511
           NF      F     N++       V  +D  +         I  ++    +G G   P F
Sbjct: 433 NFELFVKVFNAHCANVMSKDDLNLVVDVDESILTMNATFDDIFKID-MSIWGQGFSPPSF 491

Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
                 L S + +   H +      + +  +AI F             +   ++     +
Sbjct: 492 -TDEFTLVSQKTLMNKHTKCQLSL-NGKVYEAIFFNFSE---------NLPDKIKAIYSI 540

Query: 572 CVNYWRGSKRCQLRVLDA 589
             N +RGSK+ QL + D 
Sbjct: 541 EANEFRGSKKIQLILRDL 558


>gi|163783930|ref|ZP_02178901.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880798|gb|EDP74331.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 564

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 153/588 (26%), Positives = 293/588 (49%), Gaps = 34/588 (5%)

Query: 9   VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66
           +   ++G RW+ L   E       +  KH    ++ +++ NR    +  + ++ + P I+
Sbjct: 1   MIKGLTGQRWLILEDIEKAPD--YLINKHG--RVLGQLIFNRRTLFNNKFEEENIYPKIK 56

Query: 67  LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
            L+  P   T  ++ A+ +   I   + I I+GDYD DG  S AL+  FL    V    Y
Sbjct: 57  NLIE-PKYFTKLEEIAQNLANDIKKGKSIAIYGDYDADGITSTALLANFLYDIGVKVKYY 115

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP R  +GYG N + ++K I+  + ++I +D G+++YD L +A   G+ V V+DHH+ K 
Sbjct: 116 IPSRFSEGYGLNKAAIKK-ISSLSDILIVLDSGTSAYDELIFAAKNGLKVFVLDHHEPKD 174

Query: 187 EE--IPAYALVNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           +        ++NP   +       HL   G+VF +++++ ++L++D        L   LD
Sbjct: 175 KNWKFENVNILNPKLFNKINPYFKHLSTVGIVFYLMIMLRKLLKKD------IPLSPYLD 228

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
           +VA+ T+ DVVPL  LNR  V KG+    R+   G+KA++ ++N+   +++ ++G+ I P
Sbjct: 229 IVAIGTIADVVPLTYLNRILVKKGIEEINRKRRKGIKAMLNQLNLEK-VSSFDVGFQIAP 287

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+ ++    +LLIS + ++ + LA +L++LN+ R+ +   + ++++  +  +  
Sbjct: 288 RINAAGRLDDAKKAVKLLISRNEKQSKQLAYELEILNKKRQKITENVFKESQTMIKNEKP 347

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
           +      ++V G  WH G++G++A RL EK+  PSF ++   +G  + S RS    +I K
Sbjct: 348 ED----FVMVAGKNWHQGVIGIVAGRLLEKYKIPSFVLA-VNNGYAVASVRSTPEINIHK 402

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
           +++      I  K GGH+MAAG T++      L +  ++   N+    I     +ID  +
Sbjct: 403 ILNK--HAYIFEKFGGHSMAAGFTIKSKKIPELKEILKEEMKNVEKEEI---YLEIDMEV 457

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541
             S  +   +  L    P+G  NP P F   N ++Q    +    +H++   +  +    
Sbjct: 458 PLSYWDERTLKSLSILEPFGEENPFPRFIAKNLRIQDFMTIGIDNSHIKFWLKDTNGNYF 517

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           +A+ +             S G+++++     ++ +         + D 
Sbjct: 518 EALWWGAKNY----INKLSVGQKINIAYIPKISKFNNKVNINFIISDV 561


>gi|171059081|ref|YP_001791430.1| single-stranded-DNA-specific exonuclease RecJ [Leptothrix cholodnii
           SP-6]
 gi|170776526|gb|ACB34665.1| single-stranded-DNA-specific exonuclease RecJ [Leptothrix cholodnii
           SP-6]
          Length = 579

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 168/586 (28%), Positives = 267/586 (45%), Gaps = 36/586 (6%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
                 A A+ ++  +  ++AR+   R +        L+  +  L+P P  L   D AAR
Sbjct: 10  DVPPRAAWAL-EQAGVHPLLARLYAARGIRTP---SELDDGLARLIP-PTELLGADAAAR 64

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA---NMYIPDRIVDGYGPNPS 140
            +  A+   E+I+I  DYD DGA + A+ +R L+            +PDR V GYG  P+
Sbjct: 65  LLADALQAGERIVIVADYDCDGATACAVALRGLAMLGARPGTLQHVVPDRAVHGYGLTPT 124

Query: 141 LME----KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------IP 190
           +++    +  +E   +++TVD G  S+  + +A   G+ V+V DHH   ++         
Sbjct: 125 IVDLALARPAHERPSVLVTVDNGIASHAGVAHAQALGMKVLVTDHHLPAADANGAVTLPT 184

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALA 248
           A  +VNPN+         L   GV+F VL+ +   LR            L +LLDLVAL 
Sbjct: 185 ADVIVNPNQPGCAFESKALAGVGVMFYVLLALRAELRARGAFDAANQPRLDALLDLVALG 244

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSIN 306
           TV DVV L   NR  V +GL   R        A   +         +  + G+ +GP +N
Sbjct: 245 TVADVVRLDANNRRLVAQGLKRIRSGRMQAGVAALFVAAGRDPMKASGFDFGFALGPRLN 304

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           A GR+ +  LG   L+SDD      LA +LD +N+ RR +ES M EQAE  +       +
Sbjct: 305 AAGRLADMGLGIACLLSDDPGHATELAQQLDAINRQRREVESGMKEQAEVLLERLMPAGE 364

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
               + +    +H G+VG++A RLKE+  RP+F  +   DG   GSGRSI GF +   + 
Sbjct: 365 PPPALSLYDPEFHEGVVGIVAGRLKERLHRPTFVFARGADGHLKGSGRSIPGFHLRDALD 424

Query: 427 FAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              +     L K GGHAMAAG T++  +F       Q+ A   +           DG L 
Sbjct: 425 LVAKRHPEVLKKFGGHAMAAGCTIDEADFATFDVALQRVATEWLSPAALQRRLATDGPLE 484

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
               +  ++ +L+ A  +G     P+F      + S R+V   H++++      +  +AI
Sbjct: 485 RQWFDTDVVQLLD-AAVWGQAFEAPLF-TDEVDVVSQRLVGEKHMKLSVRHA-GQLREAI 541

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            F             +   R+ +   L ++ ++G KR Q+ V  A+
Sbjct: 542 WFGHTE---------ALPARVRLAYRLSLDEYQGRKRVQMVVEAAA 578


>gi|42779920|ref|NP_977167.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC
           10987]
 gi|42735838|gb|AAS39775.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC
           10987]
          Length = 559

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 156/545 (28%), Positives = 236/545 (43%), Gaps = 30/545 (5%)

Query: 11  CSISGFRW----VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65
            S SG  W                L + +   I  I    L        +  + FL P+ 
Sbjct: 7   SSTSGK-WIPHIQMPHTPPNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNW 65

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
                 P +L D  KA  RI +AI N E IMIFGDYD DG  S  L+ + L   + N  +
Sbjct: 66  EH-CHSPFLLQDMKKAVYRIFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLNANVTV 124

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
            +P R  +GYG +  +M +  +    LIITVD GS++++A+Q A  +G+DVIV DHH + 
Sbjct: 125 RLPIR-SEGYGLSAKVMNELPS-NISLIITVDNGSSAHEAMQVAKQKGVDVIVTDHHDIL 182

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                 YA +NP R DD      L  AGV   V+  ++  ++Q    P       L++L 
Sbjct: 183 QGYPDCYAFINPKRNDDTYPFPFLAGAGVALKVVQALFETIKQ----PFLKYCSELIELA 238

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
            + T+ D++PL   NR     GL       +P LK L + + I + + +  +G+ IGP  
Sbjct: 239 TIGTIADLMPLKDENRIICSYGLKQMNSNPSPALKTLFKLLKIKT-VDSSTIGFQIGPLF 297

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GRI + N+   +L ++++ + +    +L  +N  R+ M       AE  +       
Sbjct: 298 NATGRIADPNITGEMLRNNETNQAKWT--ELLCINNQRKQMTKEQFLIAEETIFQDQLHK 355

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+      +HPGI+GL+++R+ EK+ +PS  IS    G    S RS+   D   + 
Sbjct: 356 DNVIVVW---GDFHPGIIGLISSRISEKYKKPSIVISNTGTG----SARSVNKTDFSIVK 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                   L K GGH  AAGL++       L  F               P       L  
Sbjct: 409 VIQDCRDYLKKYGGHRAAAGLSIPMKEQHLLL-FRSAIQKAAKAQTCLIPPTYYLSKLPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL------QMTFESQDSE 539
              +  L   L +  P+G  NP PVF   N K   I+++   HL      +  F  Q  +
Sbjct: 468 DKFSEQLFHDLYTLEPFGMDNPKPVFLSQNTKPSFIKMLGEDHLLFGISSKCVFGFQKGD 527

Query: 540 TLQAI 544
             + I
Sbjct: 528 LYEQI 532


>gi|257126080|ref|YP_003164194.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           buccalis C-1013-b]
 gi|257050019|gb|ACV39203.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           buccalis C-1013-b]
          Length = 559

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 255/580 (43%), Gaps = 28/580 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W      E    + +   +     +++R+L+NR + + +    FLN   + +  +P + 
Sbjct: 2   KWEIKNYDEKYLASKSF--EFGESKLISRLLLNRGINTKEKVSKFLNSDKKDIH-NPFLF 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +K  +RI QA  N EKI+++GDYDVDG + VA ++  L    +N + YIP+R+ +G 
Sbjct: 59  ENMEKVVKRIQQAGENKEKIVVYGDYDVDGISGVAYLVIMLRKLGLNVDYYIPNRVHEGI 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
             N  L+       A+L ITVD    + + +    N GID+I+ DHH+          L 
Sbjct: 119 EINKHLVTFLEKREAKLFITVDTSINNREEILMLRNNGIDIIITDHHRQVEVCEEMDILT 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
              +         L  +GV F +   +Y     + K+     L   LD++ + TV DVVP
Sbjct: 179 INPKTSKTYPNKFLSGSGVAFKLADAVYERYGANKKI-----LYDYLDIIMIGTVADVVP 233

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
           +   NR  + KGL   ++    GLK +I  + I+   IT  ++G+ I P  NA GRI  S
Sbjct: 234 MTDENRFIIKKGLNNLKKTKIKGLKYIINYLKINPRNITTSDIGFFIAPIFNALGRIDNS 293

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
            +     I +D  +L  +  ++   N+ RR +E+ +  + E K+      +++   I ++
Sbjct: 294 KIVVNFFIQEDDFKLFSIIEEMKRANKIRRYLENEIYSELEEKIQR----LERPKYIFMK 349

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
             +WH G++G++ +R+  K+  P   IS  ++G G  S RSIEG +I  ++        L
Sbjct: 350 SRKWHSGVIGVVCSRISIKYNIPVILIS-IKNGYGKASCRSIEGINIFDILKSV--SDKL 406

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
            + GGH +AAG  V     G +    ++                +D  LN   +N   + 
Sbjct: 407 ERFGGHDLAAGFLVSEKYLGEIEKHLRQKLARK-NRENVQKTLYVDAWLNIENLNKRKLH 465

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPL 553
            +    P+G  N  P F   +    ++    + +     F  +++  +  I + +     
Sbjct: 466 EINRLSPFGLDNQEPNFMDSDVNFFNLTKFGINNRHFKGFVRKNNRIISVIGYNLGHKL- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLRVLDAS 590
              +     K+  +        ++        +L++ D  
Sbjct: 525 --KMNNFYKKKFKIVYTP---IFKSVHSDLFIELKIKDFK 559


>gi|328950387|ref|YP_004367722.1| single-stranded-DNA-specific exonuclease RecJ [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450711|gb|AEB11612.1| single-stranded-DNA-specific exonuclease RecJ [Marinithermus
           hydrothermalis DSM 14884]
          Length = 715

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 166/570 (29%), Positives = 257/570 (45%), Gaps = 50/570 (8%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW+            A+ Q+  +P +VA VL NR          L+P +   +PD   L 
Sbjct: 3   RWIMAPWPPREAL-EALMQRLDVPPVVAAVLYNRGFRDPQD---LDPPLA--LPD---LP 53

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             + AARR+VQA+   E+I + GDYD DG    A+++R L+    + + +IP RI +GYG
Sbjct: 54  GLETAARRVVQALERGERIRVHGDYDADGVTGTAILVRGLAALGGDVHAFIPHRIREGYG 113

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +P  + +       L ITVDCG T++  L+    QG+ VIV DHH       P   LV+
Sbjct: 114 VHPDRVAEHAQ-ACDLFITVDCGVTNHAELEALQAQGVSVIVTDHHAPGDTPPPG-ILVH 171

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P       G+     AGV F +L  ++ +L +              DL A+ T+ DV PL
Sbjct: 172 PAFAPAFKGKPKPTGAGVAFFLLWQVHALLDK-------PPPTVYADLAAIGTIADVAPL 224

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
           +G+NRA V  GL   R   + GL AL          +A  + + I P INA GR+GE+  
Sbjct: 225 LGINRALVRAGLEQLRETRHAGLAALARE--HCKEYSATEIAFRIAPRINAAGRLGEAET 282

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
               L + D    + LA +L+ LN+ R+ +E AMLE+    +         A   V+   
Sbjct: 283 ALEALTTPDPTRAQALAERLNELNRERQRVEEAMLERLLPNL------DPAAPAYVIHDP 336

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             HPG++G++A+R+ E+F +P F I+      G GS RS  G  I  + +       L +
Sbjct: 337 EGHPGVMGIVASRILERFYKPVFIIAQ-----GKGSVRSTPG--ISAVGALRAAAAHLER 389

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  AAG  +         +   ++     P     P   +DG L    +   +   L
Sbjct: 390 FGGHTQAAGFAIAEEKIPAFRNAILEYVAAHPPP---VPEVLLDGALEGEDL-EEVYRAL 445

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555
               P+G GNP P F F     Q +R++    H+           ++ + +R  G  L +
Sbjct: 446 LFLEPFGEGNPEPTFYFRGVP-QEVRLMGEGRHVSFRLGG-----VRVVKWRDDGEALLD 499

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
                  + + V   L +N W G+++ +L 
Sbjct: 500 V------EEVEVAASLTLNEWNGTRKLELI 523


>gi|295402728|ref|ZP_06812669.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975227|gb|EFG50864.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 553

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 147/529 (27%), Positives = 241/529 (45%), Gaps = 26/529 (4%)

Query: 21  LLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCD 79
           L           + ++  I  ++   L    +   +    FL P+I     DP ++ D  
Sbjct: 10  LEKHPNKALITYMARQFDIEPVLMHHLFIYGIDNCEKVSRFLFPTIDDFH-DPFLMNDMK 68

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           KA  RI++A+   EKI+I+GDYDVDG  + A++ + L     + +  +P R  +GYG +P
Sbjct: 69  KAIIRIIKALIQKEKILIYGDYDVDGMTATAILYKALKKFKADVHYRLPLR-SEGYGLSP 127

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
             MEK       LIITVD GS+++ A++ A  +G+DVIV DHH+V       YA +NP R
Sbjct: 128 KAMEKVPE-DVSLIITVDNGSSAHPAMEVAKRRGMDVIVTDHHEVLGPHPDCYAFINPRR 186

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
            D+     HL  AGV   V+  ++       K+P +  +   ++   L T+ D++PL G 
Sbjct: 187 HDNTYPFPHLAGAGVALKVVQALFMA----GKIPWDKHVYEFIEFATLGTIADLMPLKGE 242

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           NR     GL        P LK L E + I   + +  + + IGP  N+ GRI + N    
Sbjct: 243 NRIICKLGLQKMNYTPTPVLKKLFEMLRIK-YVDSSTISFQIGPIFNSSGRIDDPNQAVD 301

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           +LI+    + ++    L  LN+ R+ M     ++ E +++      Q    ++V  D +H
Sbjct: 302 ILINPSCTKADLY--PLITLNKKRQQMTKDQFQRIEEQIIQNQWYKQN---VIVVYDDFH 356

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            GI+GL+AA++  KF +P+  IS    G    S RS+   D   +         L K GG
Sbjct: 357 SGIIGLIAAKIANKFKKPAIVISLTGAG----SARSVNSTDFSIINVIKKCSYFLTKYGG 412

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  AAG +++  +   +  F +      +      P  K    +      + + D L   
Sbjct: 413 HRAAAGFSIK-PDLDHIHAFREAIQLAALDEPPLNPKLKYISTIPLHQFPMHIFDDLSVL 471

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAF 546
            P+G   P P+F      ++  +       HL++T   +     +AIAF
Sbjct: 472 EPFGMSFPKPLFYCSLLAIKQFQTFGKNNEHLKLTTNDK-----EAIAF 515


>gi|294785071|ref|ZP_06750359.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_27]
 gi|294486785|gb|EFG34147.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_27]
          Length = 789

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 154/520 (29%), Positives = 261/520 (50%), Gaps = 22/520 (4%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            + A +RI +AI N++KI I+GDYDVDG  SV+L+   LS    N + YIP R  +GYG 
Sbjct: 1   MEVATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYGL 59

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           N   ++   NE A LII+VDCG  S + + +A    +D I+ DHH++  +   A A++NP
Sbjct: 60  NKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVINP 119

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            R +++    +L   G  F+++  +Y  + + N      DL   LD+VA+ TV D+VPL+
Sbjct: 120 KREENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPLV 173

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIGE 313
             NR +V  GL +       G+K L+ ++   +       A ++GY+I P  NA GR+ +
Sbjct: 174 SDNRKFVKGGLKLLNNTKWIGIKQLLRKIFPDNWDTREYFAYDVGYIIAPIFNAAGRLED 233

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           +     L I +D  +   +  KL   N  R+ ++  +LE + A++  +   +   ++I+V
Sbjct: 234 AKQAVSLFIEEDGFKCLSIIDKLLENNVERKDIQKKILEMSIAEI--EKKQLYNKNLILV 291

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432
               +H G++G++A+++ +K+ +P+  +  +E+ G    S RSI+G +I  +        
Sbjct: 292 ANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVSD 349

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           ILVK GGH+ AAG T++  N         KF        +     KI+ +L    VN   
Sbjct: 350 ILVKYGGHSGAAGFTIKIENIEEFYQRVDKFIEENFDKDLFIKKLKIEKILAPYKVNYEF 409

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550
           +  LE   PYGA N  P+FAF N + +++R       HL +  +         I F    
Sbjct: 410 LKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGGD 469

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                + + S  K + +   L +  ++    C+L++ D  
Sbjct: 470 Y----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 505


>gi|257452231|ref|ZP_05617530.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           3_1_5R]
 gi|257465974|ref|ZP_05630285.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917130|ref|ZP_07913370.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317058774|ref|ZP_07923259.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           3_1_5R]
 gi|313684450|gb|EFS21285.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           3_1_5R]
 gi|313691005|gb|EFS27840.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 558

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 137/535 (25%), Positives = 247/535 (46%), Gaps = 19/535 (3%)

Query: 42  IVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           +++ +L NR +       +F+NPS+     DP +  + +     + +A     +I I+GD
Sbjct: 9   LLSTLLKNRGIQDFSKLHEFINPSVSSFR-DPFLFENMETIVSMLEKAKKEGSRICIYGD 67

Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160
           YDVDG    A +++      ++   YIP R  +GYG     ++  + +G +L+ITVD G 
Sbjct: 68  YDVDGITGTAFLVKVFRQIGMDTLYYIPSRDEEGYGLTKKNIDFLLEKGVKLVITVDTGY 127

Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220
            S + + YA ++ ++VI+ DHH+   EE     L    +L        L  AGV   +  
Sbjct: 128 NSLEDIAYAKSKSMEVIISDHHKTVREEGDEDILFLNPKLSQSYEFKFLSGAGVALKIAQ 187

Query: 221 LIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLK 280
            +Y+ L  D       +L   LD++ + T+ DVVP++  NR  +  GL + ++    GL 
Sbjct: 188 ALYQRLHLD-----LNELYQYLDIIMIGTIADVVPMVDENRIIIKNGLRILQKTKVKGLS 242

Query: 281 ALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339
            L++ +      I   ++ Y I P IN+ GR+G S + +   I +D  E+  +  ++  L
Sbjct: 243 YLLKYLKFGDKHINTTDVSYYISPLINSLGRVGTSRIAADFFIKEDDFEIYNIIEEMKKL 302

Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
           N+ RR +E  + + A   +  + +  +    I +   RWHPG++G++++RL  KF  P  
Sbjct: 303 NKKRRELEKNIYDDAIHSI--EKNGKKGLKCIFLANRRWHPGVIGVVSSRLSLKFQVPVV 360

Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
            I+ E    G  S RS+    +  ++    E   LV+ GGH +AAG T+E     ++  +
Sbjct: 361 LIALEGK-LGKASCRSVRNISVYNILEEVKE--DLVRYGGHDLAAGFTIEEEKVEKVRQY 417

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
           F ++      A+     + ID  L   A+   L+  +E   P+G+ NP+P+F   N   +
Sbjct: 418 FMEYLSRDTQAVERKKKYTIDMELPLEAIGENLLKDIEKISPFGSENPHPLFLEKNLNFR 477

Query: 520 SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
            IR       H   T   +      A+ F +      +  +    +   +  +  
Sbjct: 478 EIRKFGVDQRHFNGTLV-KAGREYPAVGFDLGHRIQLDTYLA---QTFDIVYYPE 528


>gi|255021678|ref|ZP_05293719.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus
           caldus ATCC 51756]
 gi|254968893|gb|EET26414.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus
           caldus ATCC 51756]
          Length = 539

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 154/525 (29%), Positives = 256/525 (48%), Gaps = 20/525 (3%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +A   I  A+ +    +I GDYDVDGA + A++   LS   +     +P+R  +GYG 
Sbjct: 1   MKEAVAWIAYAVRHQWPTVIVGDYDVDGACASAILRGSLSGL-LPVTSIVPNRFTEGYGL 59

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P+++++      +L+ITVD G +++  +  A  +G+ V+V DHH       PA  +VNP
Sbjct: 60  TPAIVDRIAP-ETKLVITVDNGVSAHAGVAAAKQRGMTVLVTDHHLPGPLRPPADVIVNP 118

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N+          C   V + +++ +++             + S +DLVALATV D+V L 
Sbjct: 119 NQPGCPFPWKSTCGTAVAWYLVLALHQT---HPHWIGREQVESQIDLVALATVADLVKLE 175

Query: 258 GLNRAYVVKGLMVARRQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
             NR  V  GL   R    NPGL  +     I  S I  ++  + IGP +NA GR+ +  
Sbjct: 176 RNNRVLVANGLRRIREGKINPGLSGIATMAQIELSTIREQDFAFKIGPRLNAAGRLADMQ 235

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            G  LL+S D++++E  +  L+ +N  R+ +++ + ++A   V           V+ V  
Sbjct: 236 TGIHLLLSRDAEQVERWSRFLETVNAQRKEVQAQIEQEAVEIV--NGMSDSGDPVLCVGS 293

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK-GIGSGRSIEGFDIGKMVSFAV--EEG 432
           D WH G+VG++A +LKE+F RP+F ++   +G    GSGRS++G+ +   ++       G
Sbjct: 294 DHWHSGVVGIVAGKLKERFERPAFVLTATGEGDLAQGSGRSLDGWHLRDALARLDTEHPG 353

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           IL + GGHAMAAGL++ +  F              VP          DG L+A+   + +
Sbjct: 354 ILQRYGGHAMAAGLSIPKSRFDAFRAGINGVLLEQVPTGALHRQVHCDGPLSAAECTLEM 413

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-----LQAIAFR 547
              +E+AGP+G G P P+F      ++S R +   H ++    +DS +     ++A+ F 
Sbjct: 414 ARAIEAAGPWGQGFPEPLFENTFV-VESARTMKGGHWKLHLRLEDSSSVPTNLVEAVHF- 471

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                         G R+     L VN W+G +  QL++  A P 
Sbjct: 472 -LDGKEVAPEPPPSGLRIRAQYRLQVNRWQGREALQLQIHSAYPA 515


>gi|257463895|ref|ZP_05628281.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D12]
 gi|317061424|ref|ZP_07925909.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D12]
 gi|313687100|gb|EFS23935.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D12]
          Length = 558

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 140/542 (25%), Positives = 246/542 (45%), Gaps = 19/542 (3%)

Query: 35  QKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSE 93
           + +    ++  +L NR +       +F+NPS+     +P +  + +     + +A  N  
Sbjct: 2   KGYNSEKLLTTLLKNRGIQDFSKLHEFINPSVSSFR-NPFLFENMETVVSMLERAKQNRT 60

Query: 94  KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           +I I+GDYDVDG    A +++      ++   YIP R  +GYG     ++    +  +L+
Sbjct: 61  RICIYGDYDVDGITGTAFLVKVFRQIEMDVVYYIPSREEEGYGLTKKNIDFLYEKRVRLV 120

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           ITVD G  S + + YA  +G++VI+ DHH+   E      L    +L        L  AG
Sbjct: 121 ITVDTGYNSLEDIAYARAKGMEVIISDHHKTVREAGDEDILFLNPKLSQSYEFKFLSGAG 180

Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           V   +    Y+ L  D        L   LD+V + T+ DVVP++  NR  +  GL V ++
Sbjct: 181 VALKIAQAFYQKLSLD-----LDGLYQYLDIVMIGTIADVVPMVDENRIIIKNGLKVLQK 235

Query: 274 QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
               GL  L++ +      I   ++ Y I P IN+ GR+G S + +   I +D  E+  +
Sbjct: 236 TKVKGLAYLLKYLKFGDKNINTTDVSYYISPLINSLGRVGTSRMAADFFIKEDDFEIYNI 295

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
             ++  LN+ RR +E  + + A   +  +    ++ S I +   RWHPG++G++++RL  
Sbjct: 296 IEEMKKLNKRRRELEKNIYDDAIRAI--EKAGKKRLSCIFLSSRRWHPGVIGVVSSRLSL 353

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452
           KF  P   I+ E    G  S RSI+   I  ++    EE  LV+ GGH +AAG T+E   
Sbjct: 354 KFQVPVVLIALEGK-LGKASCRSIKNVSIYNVLEEVKEE--LVRYGGHDLAAGFTIEEEK 410

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
             ++  +F +        +     + ID  L    V  +L+  +E   P+G+ NP+P+F 
Sbjct: 411 IEKVKRYFMESFSKKTRNVEEKKKYNIDMELPLEVVGESLLQDIEKISPFGSENPHPLFL 470

Query: 513 FPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
             N   + IR       H       ++ +   A+ F +      +  +    +   +  +
Sbjct: 471 EKNLSFREIRKFGVDQRHFNGILV-KEGKEYPAVGFDLGHRIHLDTYLA---QSFDIVYY 526

Query: 571 LC 572
             
Sbjct: 527 PE 528


>gi|260771881|ref|ZP_05880799.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio metschnikovii
           CIP 69.14]
 gi|260613173|gb|EEX38374.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio metschnikovii
           CIP 69.14]
          Length = 486

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 237/481 (49%), Gaps = 20/481 (4%)

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           N +  +P+R  DGYG +P ++++ ++ GA++I+TVD G +S + ++YA   G+ V+V DH
Sbjct: 6   NVDYLVPNRFEDGYGLSPEVVDQALHMGAEMIMTVDNGVSSIEGVRYAKQHGLQVLVTDH 65

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FD 237
           H          A+VNPN          L   GV F +++ +   +RQ      +      
Sbjct: 66  HLPGQVLPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQSGWFIKHGIPEPK 125

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNIS-SPITAE 295
           L+ L+DLVAL TV DVVPL   NR  V +GL   R     PG++ALIE        + A 
Sbjct: 126 LMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGKARPGIQALIEIAKRDARKLVAA 185

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           + G+ +GP INA GR+ + + G  LL++D+      +A +LD LNQ R+ +E  M ++A 
Sbjct: 186 DFGFALGPRINAAGRLDDMSFGVELLLTDNIHAARRMASELDALNQTRKEIEEGMKQEAL 245

Query: 356 AKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           A                +V+    WH G++G+LA+R+K+K+ RP  A +   DG   GS 
Sbjct: 246 AFCERLQFADNSALPQGLVLFQRDWHQGVIGILASRVKDKYHRPVIAFADGGDGLIKGSC 305

Query: 414 RSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           RSI    +   +        GI++K GGHAMAAGLT+   N  R    F+      +   
Sbjct: 306 RSIPSLHMRDTLDKIDTQNPGIIIKFGGHAMAAGLTIAEANLPRFRQLFEHEVALQLDEA 365

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
               +   DG L     ++   ++L SAGP+G   P+P+F     K+   ++V   HL++
Sbjct: 366 SLKGIVLSDGELTPEEFSMHTAELLRSAGPWGQAFPDPLFDGE-FKVLHQKLVGEKHLKL 424

Query: 532 TFES-----QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
             E        +  +  IAF V      +    +  K + +   + +N +RG++  QL +
Sbjct: 425 MLEPLFKGHPTNIMIDGIAFNVDLRRWPD----ASVKTVRLAYKIDINEFRGNQSLQLLI 480

Query: 587 L 587
            
Sbjct: 481 D 481


>gi|162452756|ref|YP_001615123.1| single-stranded-DNA-specific exonuclease RecJ [Sorangium cellulosum
           'So ce 56']
 gi|161163338|emb|CAN94643.1| single-stranded-DNA-specific exonuclease RecJ [Sorangium cellulosum
           'So ce 56']
          Length = 585

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 172/572 (30%), Positives = 265/572 (46%), Gaps = 29/572 (5%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTDCDKAAR 83
           E    AL + ++  +   VA +L     + D A + FL+P +  L   P  + D + +A 
Sbjct: 34  EASADALVMARELGLSITVADILHRAGWAPDEATRRFLDPRLSHL-TSPDAMADREASAE 92

Query: 84  RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
           RI +A+   E+I +FGDYD DG  + A+M   L   S      +  R    YG +   +E
Sbjct: 93  RIARAVRAGERIAVFGDYDCDGITATAIMTGGLRALSGQVVPLLATRAEGSYGLSAPALE 152

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
           + +  G  L+IT DCGS+ ++ L  A   GID +VIDHH V +E +PA A +NP+R D  
Sbjct: 153 RVMRTGPTLLITCDCGSSDHERLAAARAAGIDCVVIDHHLVPAEPLPAIAFLNPHRADCG 212

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
                L + G+   +L  + + L        + DL   LDLVA+ TV DV PL G NRA 
Sbjct: 213 FPYKGLASCGLALSLLAAVRKRLG------SSLDLRPYLDLVAIGTVADVAPLTGDNRAL 266

Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V  GL V +    PGL+AL    N+      +AE++ + I P +NA GR+G+ ++   LL
Sbjct: 267 VRAGLGVLQTGPRPGLRALAALANLDLGRGASAEDVAFRIAPRLNAPGRLGDPDIALELL 326

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           ++ D      LA  ++     RR ++  ML  A A++     D  +   IV+    +HPG
Sbjct: 327 LAHDGVTASALAATVEQAQMKRRAIQDEMLTSALAEIERAGFD--RDPAIVIARQGFHPG 384

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           +VG++A R+  ++G+P+  I+ E   KG GS R   G  +   ++    E  LV  GGH 
Sbjct: 385 VVGIVAGRITGRYGKPTIVIALEGA-KGRGSVRGPAGARLHDALTRCRAE--LVGFGGHQ 441

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNI---VPALITTPVFKIDGVLNASAVNIALIDMLES 498
            AAG+ V       L   +            A       ++D   + +AV       LE 
Sbjct: 442 AAAGVEVRADRVEALRAAWCDAFREQDLPAAAASAAAHVRLDDRDDPAAV----ARDLER 497

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
             P G GN           ++S R +   HL++         +    F      LGE   
Sbjct: 498 LEPCGEGNRPSYVLVAGAAVRSARNL-KGHLKLELTFA-RREISCFGF-----ELGELAP 550

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +  GKR+ V G L  + WRG    ++R+   +
Sbjct: 551 RFTGKRVDVVGRLRRDAWRGGDAVEIRIEHVA 582


>gi|330984034|gb|EGH82137.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 695

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 153/614 (24%), Positives = 260/614 (42%), Gaps = 75/614 (12%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            I+ R+L NR +      + + P +  L+P P  +   DKA   + + I    +I+I GD
Sbjct: 23  PILNRILQNRGIRH--IDEMIYP-LDALIP-PSSMLGMDKAVLLLEKHIRAGSRIVIVGD 78

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S ++ +  L+     +    IPDR++ GYG +  +++        LI+TVD G
Sbjct: 79  FDCDGATSTSIAVEGLTMMGARDVQFIIPDRMIHGYGLSAPVVKLAAEYEPDLIVTVDNG 138

Query: 160 STSYDALQYATNQG---------------IDVIVIDHHQVKSEEIPAY-ALVNPNRLDDL 203
             S++        G                D++V DHH    + +P    +VNPN+    
Sbjct: 139 IASFEGADAVNALGNPTTLEDGTVIPGRPCDLLVTDHHLAAEKGLPNATVIVNPNQPACD 198

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGL 259
                L   GV+F  ++ +   LR             ++  LLDLV+L TV DVV L   
Sbjct: 199 FPSKALAGCGVMFYTIMALRSHLRDSGYFHEKGMQVPNIAKLLDLVSLGTVADVVSLDRN 258

Query: 260 NRAYVVKGLMVARRQ-GNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           NR  +  GL   R+    PG+KAL++        + A ++G+ +GP INA GR+ + ++G
Sbjct: 259 NRILIHAGLKRMRQGLVRPGIKALLDIAEKELGKVVASDMGFAVGPRINAAGRLDDMSIG 318

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
            R L+  D  + + LA++L  LNQ RR +E+  +  A   V  +   + +   +V+    
Sbjct: 319 IRCLLEHDETKAQELALRLTELNQQRRDIEAHHVFDAG--VYIEQHKLMERKGVVIHDPS 376

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFE------------------------------EDG 407
           WH G+VG++AAR+KE+  RP   ++                                +  
Sbjct: 377 WHAGVVGIVAARIKERLNRPVICMTDTTAASEEREKLNVMISEGAAPDLIEAQRWVLDQC 436

Query: 408 KGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
              GS RS+ G  +  ++    +     L K GGHAMAAG++V+          F +   
Sbjct: 437 DVKGSARSVPGVHMKHVLDHINKTHPEVLGKFGGHAMAAGMSVKYGQLPLFMKLFDEEVA 496

Query: 466 NIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGPYGAGNPNPVF-----AFPNHKLQ 519
             +         ++D +      + + L   +   GP+G   P P F        + + +
Sbjct: 497 KNLTDEQMLGTIQVDIMNTQPQHMTMDLCRAISEMGPWGQHFPEPEFHARFRLIRDERRR 556

Query: 520 SIRVVNLAHLQMTFESQD--SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW- 576
           S +V+   HL+M  E  D   +  + I F                     +  L +N + 
Sbjct: 557 SPKVLKEKHLRMIVEFADYPGQQFETITFNCIHDG-----EMPVEDTFDASFGLSINEYP 611

Query: 577 RGSKRCQLRVLDAS 590
           +G+ R QL + +  
Sbjct: 612 KGTFRLQLMLKELQ 625


>gi|229195094|ref|ZP_04321869.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           m1293]
 gi|228588323|gb|EEK46366.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           m1293]
          Length = 559

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 153/545 (28%), Positives = 234/545 (42%), Gaps = 30/545 (5%)

Query: 11  CSISGFRW----VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65
            S SG  W                L + +   I  I    L        +  + FL P+ 
Sbjct: 7   SSTSGK-WIPHIQMPHTPPNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNW 65

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
                 P +L D  KA  RI +AI N E IMIFGDYD DG  S  L+ + L   + N  +
Sbjct: 66  EH-CHSPFLLQDMKKAVYRIFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLNANVTV 124

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
            +P R  +GYG +  +M +  +    LIITVD GS++++A+Q A  +G++VIV DHH + 
Sbjct: 125 RLPIR-SEGYGLSAKVMNELPS-NISLIITVDNGSSAHEAMQVAKQKGVEVIVTDHHDIL 182

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
                 YA +NP R DD      L  AGV   V+  ++  ++Q    P       L++L 
Sbjct: 183 QGYPDCYAFINPKRNDDTYPFPFLAGAGVALKVVQALFETIKQ----PFLKYCSELIELA 238

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
            + T+ D++PL   NR     GL       +P LK L + + I + + +  +G+ I P  
Sbjct: 239 TIGTIADLMPLKDENRIICSYGLKQMNSNPSPALKTLFKLLKIKT-VDSNTIGFQIAPLF 297

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GRI + ++   +L S+++ + +    +L  +N  R+ M       AE  +       
Sbjct: 298 NATGRIADPSITGEMLRSNETDQSKWT--ELLCINNQRKQMTKEQFLIAEETIFQDQLHK 355

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               V+      +HPGI+GL+++R+ EK+ +PS  IS    G    S RS+   D   + 
Sbjct: 356 DNVIVVW---GDFHPGIIGLISSRISEKYKKPSIVISNTGTG----SARSVNKTDFSIVK 408

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                   L K GGH  A GL++       L           V      P       L  
Sbjct: 409 VIQDCGDYLKKYGGHRAAGGLSIPMKEQHLLLFRSAIQKAAKVQ-TCLIPPTYYLSKLPI 467

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL------QMTFESQDSE 539
              +  L   L +  P+G  NP PVF   N K   I+++   HL      +  F  Q  +
Sbjct: 468 DKFSEQLFHDLYTLEPFGMDNPKPVFLSQNTKPSFIKMLGEDHLLFGISSKCVFGFQKGD 527

Query: 540 TLQAI 544
             + I
Sbjct: 528 LYEQI 532


>gi|313672026|ref|YP_004050137.1| single-stranded-DNA-specific exonuclease recj [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938782|gb|ADR17974.1| single-stranded-DNA-specific exonuclease RecJ [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 540

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 156/560 (27%), Positives = 277/560 (49%), Gaps = 36/560 (6%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           +I+ ++L++R +     + + NP  + L     +++  ++A R I + +  S  I+++ D
Sbjct: 5   EIIEKILISRGIR--DFEQYFNPQPKYLEKSTNLVS-IEQA-RLIAEKLKKSRLILLYSD 60

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPN-PSLMEKFINEGAQLIITVDC 158
           YDVDG  S A+  RFL+   + N  + IP+R  DGYG N   + E+F +    ++IT DC
Sbjct: 61  YDVDGVTSSAVFSRFLNEAGIKNYKVVIPNRFKDGYGLNLEKIKEEFESNPFDMLITFDC 120

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD-DLSGQGHLCAAGVVFL 217
           G  S + + Y    G+ V++ DHH  + +   A  ++NP     +  G  HLC  GVVF 
Sbjct: 121 GIGSVEEVDYLKRLGVFVVITDHHLPQKKIPSADVVINPKLSSTEEKGDYHLCGCGVVFK 180

Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277
           ++ ++  + R D+      +L   L+ VA+ATV D+VPLIG NR  V  GL V     + 
Sbjct: 181 LIHVLKVLWRLDSI-----ELKRYLEHVAIATVADIVPLIGDNRILVKNGLDVINENPSE 235

Query: 278 GLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           G+KALI    + + + + ++G+MIGP INA GR+  ++    LL+ +        A  L+
Sbjct: 236 GVKALINVSGLKAAVNSYHIGFMIGPRINASGRLDIADTSYYLLMQNSEDAAIKYARILE 295

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
            LN  R+     + E+A + +     D      I +    W+ G++G++A+RL E+F  P
Sbjct: 296 ELNHARKKECDEIFEEALSLLPQSPRDG-----ICLYKSSWNKGVIGIVASRLVERFNVP 350

Query: 398 SFAISF-----EEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVER 450
           +          ++ G   GSGRS +  ++ +++        G+++K GGH  A GL++ +
Sbjct: 351 TIIFGTSVGREDDGGIISGSGRSTDDLNLHELLVEIDREYPGLMIKYGGHLKACGLSIYQ 410

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +F    + F      +   + +      D  LN + VN  LID ++   P+G GN  P 
Sbjct: 411 EDFEAFVEAFTGILQEL--NIDSRKKIFYDMELNFTDVNFDLIDCIKKMEPFGYGNEMPK 468

Query: 511 FAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F F N ++   R +    H  +  + Q+  TL+ I F      + +        ++++ G
Sbjct: 469 FLFKNVEVLDFRAMGDGNHYIINLK-QNGRTLRGIWFNGDEQKITD--------KLNIIG 519

Query: 570 HLCVNYWRGSKRCQLRVLDA 589
              +N +  ++  Q+R+ D 
Sbjct: 520 VPIINEYNNNRYLQIRIRDI 539


>gi|306820102|ref|ZP_07453750.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551880|gb|EFM39823.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 779

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 146/543 (26%), Positives = 270/543 (49%), Gaps = 23/543 (4%)

Query: 50  RNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASV 109
           RN+     ++F +PS+     D + + D  K+  +I+  +  ++KI I+GDYDVDG ++ 
Sbjct: 25  RNIYNMTREEFFSPSVDDEH-DAMSMHDMPKSVDKILSIMSENKKICIYGDYDVDGTSAT 83

Query: 110 ALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168
           A++++        N   YIP R  +GYG N + +E        LIITVDCG T+ D +Q+
Sbjct: 84  AILLKTFDILGYKNVTYYIPHRKKEGYGLNKTAIETIKQGDISLIITVDCGITAVDEVQF 143

Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228
           A + G++VI+ DHHQV     PAYA+VNP+R +      +LC AG+ + +   +   L +
Sbjct: 144 ANDLGMEVIITDHHQVPDVLPPAYAIVNPHRKNCKYPYKNLCGAGIAYKLSRCL---LNK 200

Query: 229 DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVN 287
            N          +L++  +AT+ D++ + G NR  V   +   + +  N G++AL+    
Sbjct: 201 KNMAQT----AEILEIAGIATIADIMEINGENRIIVKNAIQSIKDRCENLGIRALLSESR 256

Query: 288 ISSPITAEN-LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
           ++     E+ +G+ I P IN+ GRI  + L  RL ++ +  E +  A KL+ LN  R+ M
Sbjct: 257 LNQKQVDEDSIGFAIAPRINSAGRIDSAYLAVRLYMAKNEIEAKTYASKLNQLNYQRQEM 316

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
             ++ E +      Q +  +  +VIV   + W  G++G++A+RL + F +P+  I+  ED
Sbjct: 317 VKSIYESSL----KQSESQKDDNVIVSYDEDWDVGVIGIVASRLVDDFSKPAIVIAI-ED 371

Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466
           G G  S RSI  F+I    + +    +L K GGH MAAG ++++ N  +L     ++A N
Sbjct: 372 GVGHASCRSIGNFNI--FNALSSMSDLLEKFGGHDMAAGFSIKKSNIKKLVKSMNRYAKN 429

Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526
            +         ++D ++    + +   + ++   P+G  N  P F   N +L++ + +  
Sbjct: 430 YLKTEDFILPTEVDYLIEPQMIELENYEKMQLFEPFGISNIRPTFMVSNVRLENPQFIGK 489

Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
                   ++ +     + F  Y     ++      K++ +   +  N +  +   Q+ +
Sbjct: 490 DKTHFKARTKSTRK-DMLKFNAYD----KYKDLDFSKKVDIIFRMNKNVYNDNVSIQMMI 544

Query: 587 LDA 589
            + 
Sbjct: 545 QEI 547


>gi|289449971|ref|YP_003475600.1| single-stranded-DNA-specific exonuclease RecJ [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184518|gb|ADC90943.1| single-stranded-DNA-specific exonuclease RecJ [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 718

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 149/589 (25%), Positives = 252/589 (42%), Gaps = 33/589 (5%)

Query: 17  RWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSIDYAKDFLNP-SIRLLMPDPLI 74
           +W           A   +     + +I+     +R ++   A+    P  +      P +
Sbjct: 7   KWTEAPQLPLPTEATKTVAAPLGLSEIIK---ASR-MAETAAQAETTPVDLGEEWHSPFL 62

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D +KA   +   I     +MI GDYD DG  + A++ R+LS   +    YIPDR+ +G
Sbjct: 63  FNDMEKAVHTVADVIARHGIVMIHGDYDADGLTATAVLYRYLSQFGLEIYTYIPDRLEEG 122

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG     ++  +     L+ITVDCG  S+D +   +  GI  +V DHH  +     A A 
Sbjct: 123 YGLAAGGVKSALEHKVDLVITVDCGIVSHDEIAELSAAGILTVVTDHHNCRPTLPAADAC 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP    +     +L  AGV   ++  +     Q            L D   + TV DV+
Sbjct: 183 LNPKWPGESYPFPYLAGAGVALKLVQGMSEFFHQ-----PEDVWRDLTDFAMIGTVADVM 237

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL+G N A V +GL     +     + L+        ITA  +G+ + P INA GR+G  
Sbjct: 238 PLVGENVAIVKEGLSRLNNRARAAWQILLNL-PTDETITATTIGFRLAPLINAAGRMGCV 296

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +   +++++D++     +A KL  LN+ RR +  A+  + E ++      +  A ++ V 
Sbjct: 297 SPALQIMLTDEADIAGEMAQKLQSLNEKRRELTQAVWTEVERQICENPLFLA-APILFVA 355

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF----EEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           G+ WH GI+G+LAA+   +F RP+F ++     +      GSGR+    D+  + +    
Sbjct: 356 GENWHTGILGILAAKAAAEFNRPTFVLNREVDADGKVLYRGSGRTYGTIDL--VATLNTL 413

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--------VPALITTPVFKIDGV 482
             +L   GGH  AAG+TV       +                   +P L        D  
Sbjct: 414 APLLEAYGGHRQAAGVTVTAAALAEIQALLAGKQQAAFTCTELAGLPELCERTPLPCDLE 473

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD--SET 540
           ++ S  N+     L++  P+G  NP PV A+    +  +R +      +    QD     
Sbjct: 474 VDLSVCNVTNWQELQNLQPFGESNPEPVLAWQGCTVLQLRKIGKQKQHLQLLLQDKAGRR 533

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           ++ I F   G    + +      ++ + G L +N W+G    QLRV+D 
Sbjct: 534 IKGIFFG--GGYWADAITAPV--KLDLLGVLQINTWQGLTEAQLRVVDI 578


>gi|257138618|ref|ZP_05586880.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           thailandensis E264]
          Length = 668

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 164/520 (31%), Positives = 250/520 (48%), Gaps = 20/520 (3%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
             +          A+  +H +  ++AR+   R + S    +     ++  L+P P  L  
Sbjct: 3   RIVTRPAVPAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKG 56

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
           C  AA  +  A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG 
Sbjct: 57  CADAAALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P ++E        L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNP
Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNP 176

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254
           N+        H+   GV+F VL+ +   LR             L  LLDLVAL TV DVV
Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVV 236

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312
            L G NR  V +GL   R        A + R       +A   +LG+ +GP +NA GR+ 
Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + +LG   L +DD      LA +LD +N+ RR +E+ M +QA A + +   D  +A+ I 
Sbjct: 297 DMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATIT 354

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428
           +    WH G++G++A RLKE+F RP+F  +  +       GSGRSI GF +   +     
Sbjct: 355 LFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISK 414

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
            E  ++V  GGHAMAAG+T++  N  R    F+  A   +       V + DG L  +  
Sbjct: 415 REPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYF 474

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH 528
              ++++L+ A  +G G P P+F+     + S  +V   H
Sbjct: 475 TPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKH 512


>gi|241668921|ref|ZP_04756499.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877453|ref|ZP_05250163.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843474|gb|EET21888.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 580

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 250/569 (43%), Gaps = 31/569 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                +AR++ +R  + +     L  SI+ L   P +  D DKA  R+ QA+ N+E I +
Sbjct: 20  GYDLFLARIISSRVSNFENIDLILKGSIKDL-SSPFLFKDIDKAVDRLFQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFINE--GAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + + +     
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFNYPQEKIRSYIGHRMQEGYGLSESLMNRILTDSIRPN 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NP + D       +
Sbjct: 139 LIITADNGSTDEPRIAVLKQNGIDTIVTDHHGIPPEGAPKSAIAVLNPTQHDCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R   Q+ K +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMTALRRKYLQNGKSLSKSYGLSNLLDFVAIGTVADCVSMANSHNNRIVTKL 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         L         +++E + + I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNDRLCWDFL-----DKEKLSSEYISFSIAPLLNSDGRVSDALGSVSFLLENDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E     L   N  R+ ++  +  +A  K     +D      + +  D  H GI G+ 
Sbjct: 314 LKIEETFENLTKQNNQRKEIQKKLTYEAITKAHQLDNDNN---SLCILLDDGHSGIHGIT 370

Query: 387 AARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAM 442
           A+R+KE FG+P      +  +     GS RS++  +I  ++         +++K GGH  
Sbjct: 371 ASRVKEMFGKPVIIFSETQNDPNLISGSARSVDSINIKTILDTIALKSPTLMIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPAL--ITTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+ + +F    D F+    N +        P+ + D  L+ +   + +++ +ES  
Sbjct: 431 AAGLTINKSDFNTFYDLFESEIINFIKNDSISLEPILEYDFELDENDFKLQILEKIESLE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F   +  ++++R+V     H Q+    ++  +++AI F      + E + 
Sbjct: 491 PFGREFEKPLFY-NSFTIENLRLVGKDKNHAQLILRYKNIPSIKAIWFNALENKIIEQIA 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
              G  +     L    + G     L + 
Sbjct: 550 I--GDTIKACYELQKEEFLGQTNLSLNIK 576


>gi|254430944|ref|ZP_05044647.1| single-stranded-DNA-specific exonuclease RecJ [Cyanobium sp. PCC
           7001]
 gi|197625397|gb|EDY37956.1| single-stranded-DNA-specific exonuclease RecJ [Cyanobium sp. PCC
           7001]
          Length = 643

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 141/515 (27%), Positives = 250/515 (48%), Gaps = 19/515 (3%)

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           A  R+ +A    E + I GDYD DG  S AL++  L          IP R+ +GYG N +
Sbjct: 86  AVTRLERACRQGEAVAICGDYDADGMTSTALLLGVLERLGARPVAAIPSRMEEGYGLNAA 145

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
           ++E+  ++G +L++TVD G  + DAL  A    ++VIV DHH + ++  P  AL++P R 
Sbjct: 146 MVERLEHQGVKLLVTVDNGIAATDALLRAEALAVEVIVTDHHSIPAQLPPLLALLHPQRT 205

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
            + S    L   G+ +++   + + + +         L    DL  + T+ D+ PL G+N
Sbjct: 206 PEDSPFRGLAGVGLAYVLAAALCQAMGR------PDALQMARDLFCIGTIADMAPLSGVN 259

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
           R +++ GL    + G  GL+AL +       P+ A+ +G+ I P INA GR+G+  L   
Sbjct: 260 RRWLIDGLPRLGQSGLAGLQALQQVAGVEDRPLDAQAVGFQIAPRINAVGRLGDPALVVE 319

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379
           LL + D +    LA + + LN+ RR +  A+  +A A +       Q+   +++    WH
Sbjct: 320 LLTTADPERALELAGQCEALNRQRRELCEAIEAEALALLEADGP--QRPRFLLLAQGHWH 377

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439
            G++G++AARL E+ G P+  ++ E  G    S R+  GF + + +       +L + GG
Sbjct: 378 HGVIGIVAARLVERLGLPAALLAGEGGGLMRASVRAPRGFAVDEALHHC--ADLLERHGG 435

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           H  A G TV   +  RL +     A + +         + + +L    ++   +  L+  
Sbjct: 436 HPAAGGFTVRAEHVARLHERLDALAGDWLDRHGGGHPVEPEALLRLEQIDRDFLHHLQRL 495

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
            P+G G+P PVF     +++  +++   HLQ+   SQ   +++A+ +R  G         
Sbjct: 496 EPFGIGHPQPVFWSAGCRVKQQKLLRGGHLQLEL-SQGERSVRAMGWRWQGGADLPLW-- 552

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                + V   + ++ W+G +R QL ++     E 
Sbjct: 553 -----VDVAYRVKLDRWQGRERLQLELVGLRGSES 582


>gi|167626485|ref|YP_001676985.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596486|gb|ABZ86484.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 580

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 140/569 (24%), Positives = 249/569 (43%), Gaps = 31/569 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                +AR++ +R  + +     L  SI+ L   P +  D DKA  R+ QA+ N+E I +
Sbjct: 20  GYDLFLARIISSRVSNFENIDLILKGSIKDL-SSPFLFKDIDKAVDRLFQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFNYPQEKIRSYIGHRMQEGYGLSESLMNRILTDRIRPN 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NP + D       +
Sbjct: 139 LIITADNGSTDEPRIAVLKQNGIDTIVTDHHGIPPEGAPKSAIAVLNPTQHDCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L++  + R   Q+ K +  ++ L +LLD VA+ T+ D V +     NR     
Sbjct: 199 AGCMVAWLLMTALRRKYLQNGKSLSKSYGLSNLLDFVAIGTIADCVSMANSHNNRIVTKL 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         L         +++E + + I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNDRLCWDFL-----DKEKLSSEYISFSIAPLLNSDGRVSDALGSVSFLLENDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E     L   N  R+ ++  +  +A  K     +D      + +  D  H GI G+ 
Sbjct: 314 LKIEETFENLTKQNNQRKEIQKKLTYEAITKAHQLDNDNN---SLCILLDDGHSGIHGIT 370

Query: 387 AARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAM 442
           A+R+KE FG+P      +  +     GS RS++  +I  ++         +++K GGH  
Sbjct: 371 ASRVKEMFGKPVIIFSETQNDPNLISGSARSVDSINIKTILDTIALKSPALMIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+ + +F    D F+    N +        P+ + D  L+ +   +  ++ +ES  
Sbjct: 431 AAGLTINKSDFDTFYDLFESEIINFIKNNSICLEPILEYDFELDENDFKLQTLEKIESLE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F   +  ++++R+V     H Q+    ++  +++AI F      + E + 
Sbjct: 491 PFGREFEKPLFY-NSFTIENLRLVGKDKNHAQLILRYKNIPSIKAIWFNASENKIIEQIA 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
              G  +     L    + G     L + 
Sbjct: 550 I--GDTIKACYELQKEEFLGQTNLSLNIK 576


>gi|307254246|ref|ZP_07536087.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306862793|gb|EFM94746.1| Single-stranded-DNA-specific exonuclease [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 496

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 241/476 (50%), Gaps = 14/476 (2%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
            ++ R+  +R ++       L  S++ L   P  L + ++A   ++ A     +I+I GD
Sbjct: 20  PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +D DGA S AL +  L      N +  IPDR   GYG + ++ E  + +GA L+ITVD G
Sbjct: 76  FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
            +S++ +       I V+V DHH        A A+VNPN  D       L   GV F V+
Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195

Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277
           + +   +R+         +L  LLDLVAL TV DVVPL   NR  V +GL   R      
Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G++AL E      S + A +LG+ I P +NA GR+   +LG  LLI+++ +    LA +L
Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394
           D LNQ R+  E  M  +A A        +Q+     I +    WH G++G+LA+R+K++F
Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375

Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450
            RP  A + E +      GS RSI G  +  ++         ++VK GGHAMAAGLT+ +
Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
            NF +    F +    I+       V   DG L+++ +NI + ++L+ AGP+G   
Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSF 491


>gi|254373996|ref|ZP_04989478.1| single-stranded-DNA-specific exonuclease [Francisella novicida
           GA99-3548]
 gi|151571716|gb|EDN37370.1| single-stranded-DNA-specific exonuclease [Francisella novicida
           GA99-3548]
          Length = 580

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 NKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P  + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYKLFENEITDIITKQNIILEPSIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      ++++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGREFEKPLFCNQFV-IENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|218288850|ref|ZP_03493101.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240939|gb|EED08116.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 669

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 150/564 (26%), Positives = 250/564 (44%), Gaps = 22/564 (3%)

Query: 30  ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           A  +     +P  VAR+L  R     D  +  L   +     DP+  T+   A  RI+QA
Sbjct: 15  ARRLASVLGMPVRVARLLAARGYEDPDEVRRLLTADVP--WSDPMDFTEMGAACERILQA 72

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           +   E I + GDYDVDG ++  ++ + +         +IP+R+ DGYG +  L+E   +E
Sbjct: 73  VRRREIIAVIGDYDVDGVSAAVIVTKAIQALGGRVTCHIPERVSDGYGFSLRLLEDAKSE 132

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL-VNPNRLDDLSGQG 207
           GA LI+TVD G  + +A+  A   G+ V+V DHH+   E +P     ++  R  D     
Sbjct: 133 GAALIVTVDNGIRAVEAITAALAHGLSVVVTDHHEPGDEVVPDGVPVIHFTRHRDPISAK 192

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
             C A V + +   +           L   L+    L AL T+ D++PL+G NR  V +G
Sbjct: 193 RGCGAFVAWKLATQLLDAAGVPKGDALRIWLM---GLAALGTLADMMPLVGENRRLVREG 249

Query: 268 LMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           + V    G+ G + L +   +    ++A ++ + + P +NA GR+  ++L  RLL+++D 
Sbjct: 250 MRVLASAGSAGWRVLCDCARVSRDTLSASDVSWRLVPRLNAAGRMAHADLAYRLLMAEDE 309

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
           +E + LA +++VLN  RR    A   +    V  +          +V    W  G+VGL+
Sbjct: 310 EEAKRLAEEIEVLNAKRREAVDAAFAEVLEVVEREHG---PNPAAIVVAGAWPLGVVGLV 366

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           AARL + +  P+ A++   DG   GSGR+ EG  +  ++        L   GGH  A G 
Sbjct: 367 AARLAQTYACPAIALADMGDGTLRGSGRAPEGASMLDLLGRC--ADFLDHFGGHEAAVGC 424

Query: 447 TVERVNFGRLCDFF--QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
            ++     +  + F             +  P+   D  L  S     L+  LE   P+G 
Sbjct: 425 GLDASQLPKFREAFLEAATVARQNGTAVDPPIAIADDYLMLSESADELLVWLERLAPFGP 484

Query: 505 GNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
            +    F     ++     +    HL++   ++     +A+ FR       E + +    
Sbjct: 485 EHEPFRFFVGPVEIVRCARMGGGEHLKLVL-AEGGAHQEAVWFRA-----PEIIARDTSG 538

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587
                  L  N WRG+ R QLR+ 
Sbjct: 539 LWAFVVELVPNAWRGAVRPQLRID 562


>gi|291295247|ref|YP_003506645.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus ruber
           DSM 1279]
 gi|290470206|gb|ADD27625.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus ruber
           DSM 1279]
          Length = 644

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/579 (28%), Positives = 253/579 (43%), Gaps = 52/579 (8%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W        +     + ++  IP + A V  NR          L P +  L  D     
Sbjct: 2   KWRLREW-PHVAELRPLIEQLGIPPLAAAVFWNRGFRRKED---LEPPLVCLPID----- 52

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +AA RI++A+   E+I + GDYD DG    AL++  L       + +IP R+ +GYG
Sbjct: 53  GLKQAALRIIEALEKRERIRVHGDYDADGLTGTALLLNGLERLGAEIHAFIPHRLEEGYG 112

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                + + +     L ITVDCG T++  L+     G+ V+V DHH   +   P    V+
Sbjct: 113 VLMDRVPEHLE-ACDLFITVDCGITNHAELRALVENGVSVLVTDHHSPGAAPPPGLV-VH 170

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P     L GQ H   +GV FL+L  +Y +L +D         L   DL A+ TV DV PL
Sbjct: 171 PALSPGLQGQAHPTGSGVAFLLLWQVYELLGRDPP-------LEYADLAAIGTVADVAPL 223

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            G NRA V +GL   R   N GLK L          +A  + + I P INA  R+G++ +
Sbjct: 224 QGFNRALVQEGLRRLRDSANLGLKVLAAE--HCQEFSASEIAFRIAPRINAASRLGQAGI 281

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL + D  +  +LA +L  LN  R+ +E AMLE+    +            +V+   
Sbjct: 282 ALELLTTQDVLQAGVLAERLTQLNVQRQRIEEAMLERIWPTL------DPTHPALVIHDA 335

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             HPG++G++A+R+ E++ +P F I+     +G GS RS  G      +  A     L +
Sbjct: 336 EGHPGVMGIVASRVLERYYKPVFIIA-----EGKGSVRSTPGISAVGALQSARAY--LER 388

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHA AAG  +         +   ++A       +  P   +DG L+   ++  L   L
Sbjct: 389 FGGHAQAAGFAIRESQIPAFTEAIHRYAAQFP---VPEPEIVLDGWLDGEDLD-ELHRAL 444

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           +   P G GNP P+F     + + +R +    HL           ++ + +R  G  L E
Sbjct: 445 QLLEPLGEGNPEPLFYTQG-RPEYVRTMGEGKHLSFRLNG-----VRVVKWRDNGERLPE 498

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            L  + G          +N W G +  +LR     P+  
Sbjct: 499 ALELAAGLA--------LNRWNGEQSIELRAQAYRPLTA 529


>gi|27262342|gb|AAN87452.1| Single-stranded-DNA-specific exonuclease recJ [Heliobacillus
           mobilis]
          Length = 534

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 174/516 (33%), Positives = 262/516 (50%), Gaps = 36/516 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RWV    Q              +    + +L  R +  D A+ F+  SI   M D L+L 
Sbjct: 10  RWVFPKQQSMPPYP-------GLSPFQSALLWRRGIKPDDAEAFIRSSIDD-MHDSLLLK 61

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D  KAA+ I QAI N   + ++GDYD DG    ALM+  L       + YI  R VDG+G
Sbjct: 62  DAGKAAQLIRQAIDNQTPVTVYGDYDCDGVTGTALMVESLRKLGAQVDWYINSRFVDGFG 121

Query: 137 PNPSLMEKFINE--GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
            +P+ +E+        +LI++VD G ++  A+Q A   G+ V+V DHH+  SE  PA A+
Sbjct: 122 MHPNGVEEIARRGGHPRLIVSVDNGISAVTAVQRAKELGMQVVVTDHHEPGSELPPADAI 181

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP + D       L   GV F VL +++      N+     +LL  LDLVA+ TV DV+
Sbjct: 182 VNPRQADCPYPYKSLAGVGVAFKVLQILF------NEAGCPRELLRSLDLVAIGTVADVM 235

Query: 255 PLIGLNRAYVVKGLMVARR--QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRI 311
           P+ G NR +V  GL +     +   GL+A+ E   +   + A  +LG++ GP +NA GR+
Sbjct: 236 PVTGENRIFVKNGLKLINWGERARTGLRAIKEVAALHREVNAHYHLGFIFGPMLNATGRL 295

Query: 312 -GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
            G       LL++ D  +   LAM+L  +NQ R+ M     ++A   V       Q+ S 
Sbjct: 296 DGVPATAVDLLLTRDYAQARALAMELKDVNQQRQEMTRRQTDKATRLVN------QRDSF 349

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429
           +VV    +H GIVGL+A+RLKE++ RP   ++  ED G   GS RS++GF + + +    
Sbjct: 350 LVVYDPEFHEGIVGLIASRLKEEYYRPVLVLTDSEDAGILKGSVRSVKGFSVKEHLIDDC 409

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              +L KGGGH MAAG ++ R N   L +   + A + V   + TP+ +ID +L    ++
Sbjct: 410 A-DLLTKGGGHEMAAGCSLPRENLPLLRERLNRAAGS-VSPELFTPLLEIDYLLRPEDLD 467

Query: 490 IALIDMLESAGPYGAGNPNPV-------FAFPNHKL 518
           + LI+ +E   PYG G P P        F     ++
Sbjct: 468 MVLIEEIEQFAPYGVGCPRPNILLAHTHFGTEQVQV 503


>gi|224372306|ref|YP_002606678.1| single-stranded-DNA-specific exonuclease RecJ [Nautilia
           profundicola AmH]
 gi|223588864|gb|ACM92600.1| single-stranded-DNA-specific exonuclease RecJ [Nautilia
           profundicola AmH]
          Length = 520

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 165/556 (29%), Positives = 259/556 (46%), Gaps = 56/556 (10%)

Query: 52  VSIDYAKDFLNPSIRLL----MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107
           ++    ++ L+  I  L    +P  L+L+D  KA++R+V AI N EKI++ GDYDVDG +
Sbjct: 2   LTKAKIREILSNRIEELSSSNLPHFLLLSDIKKASKRVVNAIKNKEKIVVVGDYDVDGVS 61

Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167
           S A+M  F      +  + IPDR  DGYG  P L+E+     A LIITVD G TS++A +
Sbjct: 62  SSAIMKLFFEKIKFDIEVVIPDRFKDGYGLTPGLLERI---EADLIITVDNGITSFEAAE 118

Query: 168 YATNQGIDVIVIDHH--------------QVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
               + +D+I+ DHH              + + +   AYA++NP    D      +C A 
Sbjct: 119 ICKQKRVDLIITDHHTPLIMDKVKCNMENEERFKLPDAYAIINPKTSPD-FPFKEICGAE 177

Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           V + +   I   ++         DL    D++A+A + DV+PL  +NR  V  GL    +
Sbjct: 178 VAWYLCAAIKSEMKLK------IDLREFTDILAIAIIADVMPLTHMNRTLVNMGLKRLNK 231

Query: 274 QGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
              P  KAL    N      AE++ + I P +NA GR+  + +    LIS + Q+   L 
Sbjct: 232 AVKPFSKALKRFFNKD--FKAEDIAFQIAPRLNAAGRMFHAGVAYEFLISKNEQKAFDLL 289

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           M+LD LN  R+  E   +E  E          +     ++    +H G+VG++A+RL  K
Sbjct: 290 MELDGLNNLRKETEKEAVESIE----------EITDDFIIVKGDFHEGVVGIIASRLVHK 339

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453
           + +P+     E +G   GSGRS+   DI  +V+   E  +L   GGH MA GL+++  NF
Sbjct: 340 YKKPAIVF-CENNGILKGSGRSLGNIDIFSLVNECKE--LLEGFGGHKMACGLSLKEENF 396

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
             L                      + G L    ++I L+D+L+   P+G GNP P F  
Sbjct: 397 EELKKVLNNKISKYSKDDFFIED-YVLGELPFKEIDIELLDILQEFEPFGEGNPKPKF-I 454

Query: 514 PNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
            N K++ ++ +   H ++   SQD   L A+ FR  G        +           +  
Sbjct: 455 ANAKIEHVQNLKENHFKLIL-SQDDIVLPAVIFRFEGEFKDSLYFK---------FSINE 504

Query: 574 NYWRGSKRCQLRVLDA 589
           N + G    QL + + 
Sbjct: 505 NSYYGR-SVQLMIEEI 519


>gi|126733218|ref|ZP_01748965.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           CCS2]
 gi|126716084|gb|EBA12948.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           CCS2]
          Length = 458

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 194/465 (41%), Positives = 272/465 (58%), Gaps = 9/465 (1%)

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDRI +GYGPN + M     +   LII VDCG+ S+  +  AT  G DVIV+DHH     
Sbjct: 2   PDRIDEGYGPNDAAMSALAKDH-DLIICVDCGTLSHGPIAAAT--GADVIVLDHHLGGET 58

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
              A A+VNPNR D+     HLCAAGVVFL+LV + R LR+  +     DL+++LDLV L
Sbjct: 59  LPKAIAVVNPNRQDESGELAHLCAAGVVFLMLVDVNRQLREAGQ--KGPDLMAMLDLVGL 116

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
           ATV DV PL G+NRA+V +GL V  R+   GL AL +   +    T+ +LG+++GP +NA
Sbjct: 117 ATVADVAPLTGVNRAFVRQGLTVMARRNRVGLTALADVAGLDQAPTSYHLGFLLGPRVNA 176

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
           GGRIG+++LG+RLL ++D  E E +A KLD LN +RR +E+ + + A  +   +  D   
Sbjct: 177 GGRIGKADLGARLLSTNDPVEAEAMAAKLDELNTDRREVEAQVRDLALEQATVRGLDG-- 234

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             ++   G+ WHPG+VG++AARLKE   RP+  I   +  +G GSGRS+ G D+G  +  
Sbjct: 235 -PLVWAAGEGWHPGVVGIVAARLKEATNRPAIVIGL-DGDEGKGSGRSVSGIDLGAAIQR 292

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             ++G+L+KGGGH MAAGLTV R           +       A I      I G+L   A
Sbjct: 293 TAQDGLLIKGGGHKMAAGLTVARDKLDDAMVRLGELLAKQGAADIGPADLNISGILMPGA 352

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
             I LI  +E AGP+GAG P P FAFP+ ++   + V   HL+++F       +  I+F 
Sbjct: 353 ATIDLITQIEDAGPFGAGAPAPRFAFPDCQIHFAKQVGANHLKISFGDGMGGRIDGISFG 412

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               P+G  LM   G R H+ G L +N W+G +  QLR+ D +P 
Sbjct: 413 AMDGPMGPMLMNHNGARFHLVGRLEINTWQGRQSVQLRLEDTAPA 457


>gi|89256862|ref|YP_514224.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315243|ref|YP_763966.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503036|ref|YP_001429101.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009245|ref|ZP_02274176.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368138|ref|ZP_04984158.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica 257]
 gi|254369739|ref|ZP_04985749.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica FSC022]
 gi|89144693|emb|CAJ80024.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130142|gb|ABI83329.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253948|gb|EBA53042.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica 257]
 gi|156253639|gb|ABU62145.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122698|gb|EDO66827.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 580

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQAVQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID I+ DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P+ + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|254372535|ref|ZP_04988024.1| hypothetical protein FTCG_00097 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570262|gb|EDN35916.1| hypothetical protein FTCG_00097 [Francisella novicida GA99-3549]
          Length = 580

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID I+ DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIITDHHAIPPEGTPQSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P  + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFENEITDIITKQNIILEPSIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|118497168|ref|YP_898218.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. novicida U112]
 gi|194323466|ref|ZP_03057243.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. novicida FTE]
 gi|118423074|gb|ABK89464.1| single-stranded-DNA-specific exonuclease [Francisella novicida
           U112]
 gi|194322321|gb|EDX19802.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. novicida FTE]
          Length = 580

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 137/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P+ + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFENEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|78778275|ref|YP_394590.1| RecJ exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498815|gb|ABB45355.1| exonuclease RecJ [Sulfurimonas denitrificans DSM 1251]
          Length = 537

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 150/523 (28%), Positives = 258/523 (49%), Gaps = 31/523 (5%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +PDP +L D  KAA++I  AI  ++KI + GDYDVDG ++ A+M+ F           IP
Sbjct: 39  IPDPSLLHDAPKAAKKIADAIRENKKITLVGDYDVDGVSATAIMVDFFRQIPYPLEAVIP 98

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  DGYG +P L+E+       LIITVD G T+ +A +    +GI++I+ DHH   +  
Sbjct: 99  NRFSDGYGVSPHLLERI---DTDLIITVDNGITALEAAEICAQRGIELIITDHHTPLTTL 155

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             AYA++NP           +C A V +L+L L         ++ LN D+ S LD++ +A
Sbjct: 156 PHAYAIINPKLSACSYPFQEICGAQVAWLLLAL------LKKELNLNIDMRSFLDILCIA 209

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            + D++PL  +NR  V  GL V           + + +N    I++E++ + I P IN+ 
Sbjct: 210 IIADIMPLTDINRPLVKDGLKVLMSSNRASCVIIRDFLN-KKNISSEDIAFQIAPRINSA 268

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ ++++    L +    +  M    L+ LN++RR +E+   ++A +            
Sbjct: 269 GRLEDASIALEFLTAQTLNKAYMQFEILNSLNESRRELEAEATKEALSIANG------ND 322

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428
            VIVV  + WH G+VG++AAR+ E + RP+  ++  E+G   GS RS+   +I K++   
Sbjct: 323 KVIVVAKEEWHEGVVGIVAARVAEHYTRPTIVLT-LENGVAKGSARSVGNVNIHKLIEE- 380

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                L K GGH MAAGLT+   +         + A   +       + ++ GV+ ++ +
Sbjct: 381 -NSHFLRKFGGHKMAAGLTLNEKDIDAFRVAINESASK-LSLDDFLSLDEVIGVVPSNQI 438

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQD--SETLQAI 544
           ++ L+ +LES  PYG  N  P+F   +  +  ++       H ++     +  S  L+ I
Sbjct: 439 DLELLALLESFEPYGEANKRPLFLIRDASILEVKTFGKDSSHSKVKIMQSNEESSILELI 498

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
            F+       + L  S   ++  +  +  N +      QL + 
Sbjct: 499 QFK-------KILNLSTADKLTCSYRVVKNEFNSKISAQLIID 534


>gi|134302444|ref|YP_001122414.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050221|gb|ABO47292.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 580

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID I+ DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P+ + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGRKFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|309389850|gb|ADO77730.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium
           praevalens DSM 2228]
          Length = 768

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 141/551 (25%), Positives = 262/551 (47%), Gaps = 27/551 (4%)

Query: 43  VARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
           +A +   R + + +   +F++ +      +        +    I+  I    +I+I+GDY
Sbjct: 24  IASLAEKRGLNTKEKLINFIDTNQYSAF-NIFDFPQIKECVAFILAHIKQGSRILIYGDY 82

Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
           DVDG  S +++   LS  + N + +IPDR  +GYG N  ++  + +    L+I+ DCG +
Sbjct: 83  DVDGITSTSILFGALSSLTKNIDYHIPDRFKEGYGLNKEVLASYKS-KVDLVISCDCGIS 141

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           +Y  +++A   GID +V DHH + ++  PA  +++P  L +      L  AG+ + ++  
Sbjct: 142 NYQEVEFAKKNGIDFVVTDHHDLPNKLPPADYVISPRLLPEDHQAYWLPGAGMAYFLIKA 201

Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281
           +++ L ++ +          LDL+ LA + DVVPL G NR     GL   +     GLKA
Sbjct: 202 VFKKLGREGEEK------EFLDLLLLAIIADVVPLKGENRYLFKTGLKKLQNTNRIGLKA 255

Query: 282 LIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340
           L   + I+   I  + LG+ IGP +N+ GR+ +++ G  LL++    +   LA +L  +N
Sbjct: 256 LYNELEINPLEINEKTLGFQIGPLLNSAGRVDKASKGVELLLAQAKDKAAGLAAELKQIN 315

Query: 341 QNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400
           Q R+ +   +  + + ++ +Q         ++     WH G++G+ A R+ E +  P+  
Sbjct: 316 QYRKEISQRIYLEIDQQLDSQQQQ-----AVIAYNSDWHQGVIGIAAGRISENYQVPAVL 370

Query: 401 IS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
           ++   E G   GS RSIE  +I +++S      +L K GGHA AAG ++++    +    
Sbjct: 371 MTSNPESGLITGSARSIENININQLISEC--SDLLEKNGGHAAAAGFSLKKDRLEKFKLR 428

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
            Q+     +  + +    K D  L  + +       L    P+G GNP P+F    + L 
Sbjct: 429 LQRLIDQKLKKIDSEIEIKTDLKLELAEITENFYQKLRLFAPFGEGNPEPLFYLETNILS 488

Query: 520 SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
           S  +    H ++   ++ S+ + A+ +              + K   +  HL  N +RG+
Sbjct: 489 SREISAGRHKKLILGTE-SDKITALWWWAGEIE--------KNKSQQIAAHLTENIYRGN 539

Query: 580 KRCQLRVLDAS 590
           K  QL +   +
Sbjct: 540 KSLQLEIKALA 550


>gi|269926147|ref|YP_003322770.1| single-stranded-DNA-specific exonuclease RecJ [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789807|gb|ACZ41948.1| single-stranded-DNA-specific exonuclease RecJ [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 564

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 153/517 (29%), Positives = 255/517 (49%), Gaps = 20/517 (3%)

Query: 41  DIVARVLVNRN-VSIDYAKDFL--NP--SIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
               R+L++R  VS+     F   NP   +  L+ +PL L D ++AA  I++AI N+E I
Sbjct: 21  PATERLLLSRGLVSVHDRDLFFVENPLYQLGDLLGNPLELPDAEQAAFEILKAINNNEDI 80

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
            I+GDYDVDG  + A++ R L    V    YIP RI +G+G N   +     +G + ++T
Sbjct: 81  WIYGDYDVDGVTASAILGRGLKQLGVTPKFYIPHRIDEGFGLNKDAIATIAEKGCKTLVT 140

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           VDCG+++ + ++YA + G+ VI+ DHH   SE      +VNP R            AGV 
Sbjct: 141 VDCGASNVEEVEYAKSLGLRVIITDHHTTTSEIDFPVPVVNPIRQTGNYPYREHTGAGVA 200

Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
           +  L  I        ++ ++     L+ L AL T+ DV PL G NR  V  GL   R   
Sbjct: 201 YSFLRAIVYKSPIRKRIKVHP----LIQLAALGTIGDVAPLTGENRLLVKAGLQSMRTVP 256

Query: 276 NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             GL+AL +R   ISS +   +L + I P +N+ GR+  + +  +LL++DD+ +   ++M
Sbjct: 257 LVGLRALFQRSGIISSFVNEADLAFKIVPRLNSAGRMSHAKVALKLLLTDDALDAFKISM 316

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
            L+ LN  R+    +ML +A   +  +       ++I V  D W P ++G++AA+L  ++
Sbjct: 317 HLEKLNALRKATTDSMLVEAREMI--ESGTALNGNIITVAKDGWSPALLGIIAAQLVREY 374

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
           G+P    +     K   S RSI G DI   ++      ++++ GGH+ AAG T +  +  
Sbjct: 375 GKPVIV-ASISGDKARASVRSITGKDIMIPLNNC--SSLMLEFGGHSHAAGFTCKVSDLQ 431

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
            +         NI          ++D  ++   +N  L ++L    P+G GNP P F   
Sbjct: 432 DVHHHLDAEIPNISAIEDLP---EVDIEVSPQDINEDLSNLLCRMAPFGQGNPEPRFGIS 488

Query: 515 NHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549
           + ++ +I++V     HL+   E      ++ + F   
Sbjct: 489 DVQMHNIQLVGSEFSHLKFEIEGASGRRIEVLGFGAG 525


>gi|307546445|ref|YP_003898924.1| single-stranded-DNA-specific exonuclease RecJ [Halomonas elongata
           DSM 2581]
 gi|307218469|emb|CBV43739.1| single-stranded-DNA-specific exonuclease RecJ [Halomonas elongata
           DSM 2581]
          Length = 603

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 177/595 (29%), Positives = 270/595 (45%), Gaps = 29/595 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNR--NVSIDYAKDFLNPSIRLLMPDPLILT 76
           +    ++      A+ +   +  + AR+L  R    + + A   + PS+R L   P  L 
Sbjct: 15  ILPRPRDAAVEQRALAE--GLTPLQARILAGRLGGYTGELAP-LVAPSLRYLAH-PERLQ 70

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC-SV---NANMYIPDRIV 132
           D  +AA RI +A+   E I I  DYDVDG  S  ++ R L+    +     +  I  RI 
Sbjct: 71  DGRRAAERIARAVTEGEHIGILTDYDVDGITSHVVIRRTLNELFGIPENRLHSLIGHRIH 130

Query: 133 DGYGPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           DGYG +  L+E+   ++    L+IT DCGS+    +      GIDV+V DHH + +E  P
Sbjct: 131 DGYGISLPLVERTLSLSPRPSLVITADCGSSDEPRIARLREAGIDVVVSDHHALPTEGPP 190

Query: 191 --AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVAL 247
             A+A VNP R D       +    V +LV+ L   +L +     P    L   L  VAL
Sbjct: 191 ASAFATVNPTRDDCTYPDPTIAGCMVAWLVMSLTRSVLIEWGVLEPATPKLSPWLSYVAL 250

Query: 248 ATVCDVVPLIGL--NRAYVVKGLMVARRQGNPGLKALIERVNISSPITA-ENLGYMIGPS 304
            TV D V L G   NRA V  GL +  R      + + +R+   S     E L + +GP 
Sbjct: 251 GTVADCVSLGGSAANRAVVAHGLTLINRMEAACWRTMAQRLGDDSVPFDAETLAFQMGPR 310

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA  R+ +       +++ D          LD  NQ+R+ +E+ M E+A    + + + 
Sbjct: 311 INARSRLDDPYAALHFMLAADDATAARHLETLDQDNQSRKAIEAEMTERARGLAMAELEA 370

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGK 423
              A ++VV  +  HPG+ G++A+RL + FGRP+  ++   + G   GSGRSIE   +  
Sbjct: 371 --GAPLLVVLLEEGHPGVQGIVASRLVQAFGRPALVLTPAAQPGMLTGSGRSIEALHLRD 428

Query: 424 MVSFAVE--EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
            +  A E     L + GGH  AAG+ V R  F        +     +      P    DG
Sbjct: 429 ALQRAYELAPASLPRFGGHRGAAGVGVPREAFDDFRQALLQAVSEQLGETELGPRVFTDG 488

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE 539
            L A  + +  +D LE+ GP+G     P+F     + +S+R V    +HL +   S  + 
Sbjct: 489 ELEADQLALETLDELEALGPFGREFDAPLFEG-VLRAESLRTVGADGSHLMLELSS-GAT 546

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
           +++AI FR      GE      G  +     L  N WRG +  QL +  A P E 
Sbjct: 547 SIRAIWFRALTP--GEMPAFDAGDLLRCAYKLNRNRWRGRESLQLIIEHAEPTEA 599


>gi|56707620|ref|YP_169516.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670091|ref|YP_666648.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224456690|ref|ZP_03665163.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370137|ref|ZP_04986143.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874440|ref|ZP_05247150.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56604112|emb|CAG45111.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320424|emb|CAL08494.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568381|gb|EDN34035.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840439|gb|EET18875.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158777|gb|ADA78168.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 580

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 249/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ +A+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYKALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID I+ DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFNIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +L   F+    +I+        P+ + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKLYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGRKFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|124267936|ref|YP_001021940.1| exonuclease RecJ [Methylibium petroleiphilum PM1]
 gi|124260711|gb|ABM95705.1| exonuclease RecJ [Methylibium petroleiphilum PM1]
          Length = 581

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 165/597 (27%), Positives = 261/597 (43%), Gaps = 42/597 (7%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              +       A ++ ++  +  ++AR+   R ++       L+ S+ LL+P   +L   
Sbjct: 2   QIAVRDVPPRTAWSL-EQAGVSPLLARLFAARGITAAEQ---LDDSLALLLPPTALLGAA 57

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDGY 135
           D A            +I++  DYD DGA + A+ +R L             +PDR V GY
Sbjct: 58  DAARLLADAT-QQRRRIVVVADYDCDGATACAVALRGLRLLGATPETLGYVVPDRQVHGY 116

Query: 136 GPNPSLMEKFI----NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           G  P++++        +   +++TVD G  S D + +A  +G+ V+V DHH    ++   
Sbjct: 117 GLTPAIVDLAFGVFGGQAPDVLVTVDNGIASLDGVAHAKARGLQVLVTDHHLPALQDDRV 176

Query: 192 Y-----ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDL 244
                  +VNPN+         L   GV+F VL+ +   LR            L +LLDL
Sbjct: 177 VLPTADVIVNPNQPGCPFESKALAGVGVMFYVLLALRSELRSRGVFDAAAQPRLDALLDL 236

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIG 302
           VAL TV DVV L   NR  V +GL   R                   +  +  + G+ +G
Sbjct: 237 VALGTVADVVKLDENNRRLVAQGLRRIRSGRMQPGVRALFDAAARDPARASGFDFGFALG 296

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +NA GR+    LG   L++DD+     LA +LD +N+ RR +ES M EQAEA +    
Sbjct: 297 PRLNAAGRMENMTLGIECLLTDDAGRAAELAQQLDAINRERREVESGMREQAEAMLEALV 356

Query: 363 DDI-------QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
                          + +    +H G+VG++A+RLK++  RP+F  +  +DG   GSGRS
Sbjct: 357 ARDDHGAGAGDPPPALAIYDPGFHEGVVGIVASRLKDRSHRPTFVFARGQDGLLKGSGRS 416

Query: 416 IEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           I GF +   +        G+L + GGHAMAAG T+   +F R      + A   + A   
Sbjct: 417 IPGFHLRDALDLVSKRHPGLLRRFGGHAMAAGATLAEADFARFERALVQVAGEWLDAAAL 476

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
               + DG L A   N   +  LE A  +G     PVF+    ++ S R+V   HL++  
Sbjct: 477 QRTLRTDGPLGAEYFNADTVRALE-AQVWGQAFEPPVFSDR-VEVVSQRLVGEKHLKLAV 534

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    AI F                 ++ +   L V+ + G +R Q+ V  A+
Sbjct: 535 RH-GGALRDAIWFGHSE---------PVAAQVTLAYQLRVDEYNGRQRVQMIVEAAA 581


>gi|282900086|ref|ZP_06308043.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281194968|gb|EFA69908.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 790

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 160/612 (26%), Positives = 269/612 (43%), Gaps = 52/612 (8%)

Query: 17  RWVSLLGQEGINRAL-AITQKHAI-------PDIVARVLVNRNVSID-YAKDFLNPSIRL 67
           +W+ L   E     L A+ +++ I        + VA++L  R +  +    +FL+     
Sbjct: 2   KWILLENIEIPQDFLQAVQKQYHIRHGSKSKANFVAQILWQRGIRTELELVNFLDFKNYR 61

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN--- 124
                    + + A  R+  A+ + EK+ I+GD+D DG  S AL+   L           
Sbjct: 62  PASSFEFGEEMNLAVNRLKAAVISKEKVGIWGDFDADGITSTALLWDGLGEFFPQYEQLT 121

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            YIP+R+ + +G N + +E+   +G +LIIT D GST+ D + YA   GID+IV DHH +
Sbjct: 122 YYIPNRLTESHGLNFAGIERLAQQGCRLIITCDTGSTNIDEIVYAQKLGIDLIVTDHHTL 181

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
            +E  P  A++NP  L +     HL    V + ++  +Y  L    + P    L  LLDL
Sbjct: 182 PTERPPVSAIINPRYLPETHSLFHLSGVAVAYKLVEALYETLPDIPQNP----LEDLLDL 237

Query: 245 VALATVCDVVPLIGLNRAYVVKGL--------MVARRQGNPGLKALIERVNISSPITAEN 296
           VA+  + D+V L G  R     G+                PG+K L+E    +      +
Sbjct: 238 VAIGLIADLVQLKGDCRYLAQIGIDKLHQESKKGILHSRRPGIKKLLELCQKNGD-RPMD 296

Query: 297 LGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           + + +GP INA  R  G+ +    LL S D +    LA + ++ N  R+ ++  + EQA 
Sbjct: 297 ISFGLGPRINAVSRIHGDGSFCVELLTSRDIKRCCQLAQETELANSRRKSLQKDVQEQAR 356

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIG 411
            K+     D+    VIV+   +W  G++GL+A ++ ++ G+P+  +S +          G
Sbjct: 357 KKLGEL--DLSTTHVIVLVDSQWPGGVLGLVAGQIAQETGKPTILLSTDSLDSKTNLARG 414

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S RSI   D+ ++V    +  +L + GGH  AAGL++   N G   D   +     V  +
Sbjct: 415 SARSINSIDLYQLVQK--QAHLLHRFGGHPFAAGLSLSVENIGLFTDAINQQFRLSVGGI 472

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRV 523
             TP  + D V+  + +   L   L+   P G GNP P     N         K+Q  + 
Sbjct: 473 NLTPTVQADLVVTVADLGRELFLELKLMEPCGMGNPVPKLLIKNCWFENISHEKIQDYQG 532

Query: 524 VNLAHLQMTFESQDS---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
             + +L+  F   D    +    I +      L +        R      + +N  +   
Sbjct: 533 NKIQYLKTKFLMGDDSSQQRFPGIWWGHDKNDLPQ-------GRCDCIVEIDINNNKAQP 585

Query: 581 RCQLRVLDASPV 592
             Q+R++D  P 
Sbjct: 586 EHQIRLIDVRPT 597


>gi|187932050|ref|YP_001892035.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712959|gb|ACD31256.1| single-stranded-DNA-specific exonuclease RecJ [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 580

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID I+ DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQSYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P+ + D  L+     +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGRKFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|222823059|ref|YP_002574632.1| single-stranded-DNA specific exonuclease [Campylobacter lari
           RM2100]
 gi|222538280|gb|ACM63381.1| single-stranded-DNA specific exonuclease [Campylobacter lari
           RM2100]
          Length = 523

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 149/536 (27%), Positives = 262/536 (48%), Gaps = 31/536 (5%)

Query: 58  KDFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115
           + F+N +   L  +P P  L D  K A RI +AI  ++K+ I GDYDVDG  S  ++  F
Sbjct: 13  QRFINDTHVKLCDLPMPSCLKDVYKGALRIKEAIEKNQKLAIVGDYDVDGVISCVILSEF 72

Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175
                 +  + IP+R  DGYG N  ++ +   +G  LIITVD G  ++DA +    +GID
Sbjct: 73  FDDIGYDYVVKIPNRFKDGYGLNEEIINEL--DGVDLIITVDNGIAAFDAAELCLQKGID 130

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           +I+ DHH   +    AYA++NP + D       +C A V + ++  I  + + +      
Sbjct: 131 LIITDHHMPPAILPKAYAIINPKQQDCDFPDIEICGAQVAWYLVAAIKEVCKIN------ 184

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
           +++   ++L+++A + D++ L  LNRA V KG+           KA+ +          +
Sbjct: 185 YNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKQYFGKDK-FELD 243

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           N+ ++I P IN+ GR+ ++ +  + L S +  E+     ++   N +R+  E  + +Q  
Sbjct: 244 NISFLIAPLINSAGRMDDAIISYKFLHSKNIDEVMGYLEQIITYNNSRKDEERELFKQCL 303

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
            +V       +   VI+V G  WH G++G++A+RL + F +P+F  S  E  K   S RS
Sbjct: 304 EQV------DENDPVIIVNGQNWHEGVLGIVASRLVKHFNKPAFVFSECEQ-KAKASVRS 356

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           +   DI  ++  A E  +    GGH  AAG+ VE   FG       +   N +P      
Sbjct: 357 VGRIDILNVIEQAKEFVL--SYGGHKGAAGVLVELEKFGVFKSKLYEICQN-IPKDDFYN 413

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTF 533
             ++ G ++ + V+  L+++LE   P+G  NP P F F    +++ R +     H+++  
Sbjct: 414 ADEVLGSIDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKRKLGKDENHMKLIL 473

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            +Q ++TL+A+ F     P         G+ + +   +  N +RG    QL + + 
Sbjct: 474 -TQGNKTLEALFFNFDYEP-------ELGESIDLIASVSKNNFRGLITPQLTIKEI 521


>gi|33240434|ref|NP_875376.1| single-stranded DNA-specific exonuclease [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237961|gb|AAQ00029.1| Single-stranded DNA-specific exonuclease [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 626

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 144/556 (25%), Positives = 270/556 (48%), Gaps = 30/556 (5%)

Query: 42  IVARVLVNRNV-SIDYAKDFLNPS--IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           I+  +L  R   S    ++F+ PS     L   P +    + A+ R++ AI N E+I I 
Sbjct: 25  IIKEILYRRGFQSKSDIQNFIEPSKPPNALFHFPFL----NIASERVISAIKNHEEIAIC 80

Query: 99  GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           GDYD DG  S AL++  L+  +      IP R  DGYG N ++++K +     L+ITVD 
Sbjct: 81  GDYDADGMTSTALLIDVLTKLNAKPIPLIPSRQDDGYGLNKAIIDKIVALNINLLITVDN 140

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G ++ + L+YA + GIDVIV DHH++  +   A+AL++P    + S    +   GV +++
Sbjct: 141 GVSAIEELKYAKSLGIDVIVTDHHKINHQLNDAFALIHPETTPEKSPYRSIAGVGVTYIL 200

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278
              I + L ++  + L+       DL+ + T+ D+  L G NR ++   +   +   + G
Sbjct: 201 AEDIAKKLNKEEILNLSK------DLLCIGTIADMSKLEGANRYWLKHWIYKLKDSTSLG 254

Query: 279 LKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           L+A+ +     +  I   ++ + I P IN+ GRI +  L   LLI  D  +++ +A + +
Sbjct: 255 LQAIYKNSKLNNLQIKTNDISFKIAPRINSIGRIDDPKLILDLLIEKDQSKVDHMANRCE 314

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
            +N+ R+ +   + ++A   +  +  D Q  S I++    W+ G++G++A+R+  K+ RP
Sbjct: 315 EINRLRKKLCLIVEKEALNIL--EKKDAQIDSFILLAQGHWNHGVIGIVASRIMNKYLRP 372

Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
           +  +S E +G    S RS + F + + +       +L K GGHA AAG TV+  N   L 
Sbjct: 373 TAILSSEGEGLLRASVRSPKNFHVTEALGKC--SDLLEKYGGHAAAAGFTVKASNLMALE 430

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
                 A   +           +  ++ S +N  L+  L+   P+G GN  P+F   + +
Sbjct: 431 KKLNSIAETWLSQNEVAK-ISPEARIDFSQINDELLGDLKKLEPFGIGNQKPLFWTNSCE 489

Query: 518 LQSIRV--VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           +   R+       L+++ ++ D  +  AI +      +      +  K +++  ++ ++ 
Sbjct: 490 VTKYRIGYFGE--LRISLKNAD-ISFDAIKWEFSKKDI------NLPKTINIAFNIDIST 540

Query: 576 WRGSKRCQLRVLDASP 591
            +      L ++D  P
Sbjct: 541 KQDKDIVCLNIVDFVP 556


>gi|260101064|gb|ACX31683.1| single-stranded-DNA-specific exonuclease [Deinococcus radiodurans]
          Length = 705

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 159/575 (27%), Positives = 256/575 (44%), Gaps = 48/575 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W+           LA  ++  +   VA+VL  R++  +     L      L P+P +   
Sbjct: 7   WLLAPPASRDAL-LATMREWQVSPPVAQVLCGRDLRTELLALPL-----ELTPNPAL--- 57

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +AAR IV A+   ++I I GDYD DG ++ A ++  L     N + +IP R+ +GYG 
Sbjct: 58  -REAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANVHGFIPHRLNEGYGI 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +P  + +     A L++TVDCG ++ D ++     G +V+V DHH           +   
Sbjct: 117 HPDRVPEHAA-AADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECLVVHPH 175

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
              D    + +L  AGV + +L  +Y  L +        +  +LL L  L TV DV PL+
Sbjct: 176 LTPDYDPDRHNLTGAGVAYHLLWAVYEELGR-------PEPRALLPLATLGTVADVAPLL 228

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G NRA V  GL    R   PGL+AL+    +    TA ++ +++ P INA GR+GE++  
Sbjct: 229 GENRALVRAGLAEMARTELPGLRALMNEKRVRQ-PTARDVAFILAPRINAAGRMGEADRA 287

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             LL +    E + LA  L++ NQ RR ++  M  QA                +V+  D 
Sbjct: 288 LELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLA------DPNDPALVLTHDD 341

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
           WH G++G++A++L E F RP + ++      G GS RS  G  I  +        +L + 
Sbjct: 342 WHAGVMGIVASKLVETFNRPVYIVAQ-----GKGSVRSTPG--ISAVQGLRESRDLLGRF 394

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGH  AAG +++  NFG L +    +           P  ++D  L  +A+   L+  L 
Sbjct: 395 GGHPGAAGFSLDPQNFGALRERIHGYVRQFPTP---VPAVRLDAPLPVAALTPELLSELS 451

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
              P+G GNP P++      L   R+V      + F       ++ + +       GE  
Sbjct: 452 ILEPFGEGNPRPLWHLRG-PLTDTRLVGKQGDVLQFRFGG---VKGMKYSERDDAAGER- 506

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                    V   L +N W+G    +L      P+
Sbjct: 507 --------DVAAELALNEWKGRTSLELHAAALRPL 533


>gi|294783782|ref|ZP_06749106.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           1_1_41FAA]
 gi|294480660|gb|EFG28437.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           1_1_41FAA]
          Length = 554

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 141/556 (25%), Positives = 254/556 (45%), Gaps = 19/556 (3%)

Query: 41  DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           +++  +L  R        + F+NP  +    +P    + +K   RI+ A  N EKI I+G
Sbjct: 9   ELIKDLLEKRGQESQHQIEKFMNPEYKDF-KNPFDFENMEKIVNRIILARENKEKIFIYG 67

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYDVDG +  A + RF +   ++ N YIP R    YG +   ++ F     +L+ITVD G
Sbjct: 68  DYDVDGISGTAFLTRFFNEIGIDTNYYIPSRNETDYGVSKKSIDYFHKRQGKLVITVDTG 127

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
             + + ++YA + G++VIV DHH+   E+     L    +L       +L  AGV F + 
Sbjct: 128 YNTIEDVRYAKSLGMEVIVTDHHKTVKEKFDDEILYLNPKLSKSYKFQYLSGAGVAFKLA 187

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             +   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + +     GL
Sbjct: 188 QGLCMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKIIKNTKVKGL 242

Query: 280 KALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
             L+  +      +T  ++ Y I P IN+ GR+G S +G+   + +D  +L  +  ++  
Sbjct: 243 SYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKEDEFDLYNIIEEMKE 302

Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
            N+ RR +E  + + A  K+      + + SVI +   +WHPG++G++++RL  KF  P 
Sbjct: 303 QNRQRRTLEKHIYDDAMRKIKNLKLPLDKLSVIFLSSSKWHPGVIGVVSSRLTIKFNVPV 362

Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
             ++  +   G  S RS+   +I      +  + +L + GGH +AAG  V +     L +
Sbjct: 363 ILVA-IDGNYGKASCRSVG--NISIFNLLSNVKHLLERYGGHDLAAGFVVHKEKLNELRE 419

Query: 459 FFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
           +F +    +               D  L+   +     D +E  GP+G+ NP+P+F   +
Sbjct: 420 YFIRTIPRLKEEDNKAKKDYGKSFDFELSVKDLGEKAFDFMEKMGPFGSNNPHPLFFDSD 479

Query: 516 HKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
            KL +I+   +          +D+ +  A+ F +      +++     K  ++  +    
Sbjct: 480 LKLDNIKRFGVDFRHFNGIIYKDNVSYNAVGFELADEIQEDYI----NKTYNIVYYPEKI 535

Query: 575 YWRGSKRCQLRVLDAS 590
                +  Q+ +    
Sbjct: 536 ILNNEEVTQIILKSIK 551


>gi|237739234|ref|ZP_04569715.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           2_1_31]
 gi|229422842|gb|EEO37889.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           2_1_31]
          Length = 554

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 142/556 (25%), Positives = 254/556 (45%), Gaps = 19/556 (3%)

Query: 41  DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           +++  +L  R        + F+NP  +    +P    + +K   RI+ A  N EKI I+G
Sbjct: 9   ELIKDLLEKRGQESQHQIEKFMNPEYKDF-KNPFDFENMEKIVNRIILARENKEKIFIYG 67

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYDVDG +  A + RF +   ++ N YIP R    YG +   ++ F     +L+ITVD G
Sbjct: 68  DYDVDGISGTAFLTRFFNEIGIDTNYYIPSRNETDYGVSKKSIDYFHKRQGKLVITVDTG 127

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
             + + ++YA + G++VIV DHH+   E+     L    +L       +L  AGV F + 
Sbjct: 128 YNTIEDVRYAKSLGMEVIVTDHHKTVKEKFDDEILYLNPKLSKSYKFQYLSGAGVAFKLA 187

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             +   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + +     GL
Sbjct: 188 QGLCMSLGLD-----MGIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKIIKNTKVKGL 242

Query: 280 KALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
             L+  +      +T  ++ Y I P IN+ GR+G S +G+   + +D  +L  +  ++  
Sbjct: 243 SYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKEDEFDLYNIIEEMKE 302

Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
            N+ RR +E  + + A  K+      + + SVI +   +WHPG++G++++RL  KF  P 
Sbjct: 303 QNRQRRTLEKYIYDDAMRKIKNLKLPLDKLSVIFLSSSKWHPGVIGVVSSRLTIKFNVPV 362

Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
             ++  +   G  S RS+   +I      +  + +L + GGH +AAG  V +     L +
Sbjct: 363 ILVA-IDGDYGKASCRSVG--NISIFNLLSNVKHLLERYGGHDLAAGFVVHKEKLNELRE 419

Query: 459 FFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
           +F +    +               D  L+   +     D +E  GP+G+ NP+P+F   N
Sbjct: 420 YFIRTIPRLKEEDNKAKKDYEKSFDFELSVKDLGEKAFDFMEKMGPFGSSNPHPLFFDSN 479

Query: 516 HKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
            KL +I+   +          +D+ +  A+ F +      +++     K  ++  +    
Sbjct: 480 LKLDNIKRFGVDFRHFNGIIYKDNVSYNAVGFELADEIKEDYI----NKTYNIVYYPEKI 535

Query: 575 YWRGSKRCQLRVLDAS 590
                +  Q+ +    
Sbjct: 536 ILNNEEVTQIILKSIK 551


>gi|312144167|ref|YP_003995613.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp.
           'sapolanicus']
 gi|311904818|gb|ADQ15259.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp.
           'sapolanicus']
          Length = 767

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 147/551 (26%), Positives = 266/551 (48%), Gaps = 29/551 (5%)

Query: 50  RNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108
           R ++  +  K FL       + +        +A   I+  I N++ I+I+GDYDVDG +S
Sbjct: 31  RGLNNKNELKKFLELDNYEEL-NLEAFPQIMEAVDFILSYIKNNKNILIYGDYDVDGISS 89

Query: 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168
            A++M  L   S N   +IPDR  +GYG N  +++ + +E   L+I+ DCG ++Y+ +++
Sbjct: 90  TAILMGALQRLSDNIVYHIPDRFKEGYGLNKDVLKSY-SESIDLVISCDCGISNYEEVKF 148

Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228
           A   G+  +V DHH +  +  PA  +++P  L +      L  AG+ F ++  IY+ + +
Sbjct: 149 AKKMGMAFVVTDHHDLPEKLPPADYILSPRLLAENHQGYWLPGAGMAFFLVKAIYKKIER 208

Query: 229 DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI 288
             +          LDL+ LA + DVVPLIG NR      L   ++   PGLKAL   +NI
Sbjct: 209 AGEEK------DFLDLLLLAIIADVVPLIGENRYLFKTALTKLQQSQRPGLKALYNELNI 262

Query: 289 SSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347
           ++  I  + LG+ I P +N+ GRI  +    +LL+++D  +   LA +L  +NQ R+ + 
Sbjct: 263 NAHEINEKVLGFQIAPILNSAGRIDNAEKALKLLLAEDKTQAFSLAAQLKDINQQRKKIS 322

Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-ED 406
             +  +AE  +     D +Q   +++    WH G++G+ A R+ E +  P   +++  + 
Sbjct: 323 QEIFLEAEKAI-----DSEQRKALILYNKSWHQGVIGIAAGRIAENYQIPVVLMTYNPDK 377

Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466
                S RSIEG +I  ++S      +L K GGHA AAG ++++    +     ++  + 
Sbjct: 378 DLITASARSIEGININNLISKC--SSLLEKHGGHAAAAGFSLKKDRLEKFRLRLKRLINQ 435

Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-N 525
            + +L    V   D  +  + +N      L    P+G  NP PVF     ++ + R + N
Sbjct: 436 ELKSLEQNLVITTDLEVELAELNHEFYQKLRLFAPFGEANPEPVFYTE-VEILNSRELSN 494

Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
             H +M       + + A+ +      + +           +   L  N ++G++  +L 
Sbjct: 495 GRHKKMVVSD-GKDKITALWWWAKDIKIHQKQK--------LAFKLSENIYQGNRSLELE 545

Query: 586 VLDASPVEGHH 596
           +   SP++   
Sbjct: 546 IKALSPLDKQK 556


>gi|149195378|ref|ZP_01872463.1| RecJ exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149134469|gb|EDM22960.1| RecJ exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 531

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 165/563 (29%), Positives = 259/563 (46%), Gaps = 61/563 (10%)

Query: 52  VSIDYAKDFLNPSIRLL----MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107
           ++     + L+  I  +    +P   +L+D  KA  RI++AI N EKI++ GDYDVDG +
Sbjct: 2   LTKQKILEILSHRIEEINSLNIPHFSLLSDIKKATNRIIKAINNKEKIVVVGDYDVDGVS 61

Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167
           S A+M  F      N  + IPDR  +GYG  P L+EK     A LIITVD G TS++A++
Sbjct: 62  SSAIMKLFFEKIGYNIEVVIPDRFKEGYGLTPKLLEKI---DANLIITVDNGITSFEAVE 118

Query: 168 YATNQGIDVIVIDHHQV---------------------KSEEIPAYALVNPNRLDDLSGQ 206
              + GIDVIV DHH                           +P    +   ++      
Sbjct: 119 ICNDLGIDVIVTDHHTPLINEEWKMESGDFNSKFSTLNSKFILPNAYAIVNPKISPDFPF 178

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
             +C A V + +   I   L          DL   LD++A+A + DV+PL  +NR  V  
Sbjct: 179 KEICGAEVAWYLCASIKNALNLK------IDLREFLDILAIAIIADVMPLTHMNRTLVNM 232

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           GL    +   P  +A+    N    I +E++ Y I P INA GR+  + +    L S D 
Sbjct: 233 GLKKLNKATKPFSRAIKRFFNKE--INSEDIAYQIAPRINAAGRVANAKVAFEFLTSKDE 290

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
           +E   L ++LD LN  R+ +E  +L+  E        D +   V  V    +H G++G++
Sbjct: 291 EEAFRLFLELDNLNNLRKEIEKEILDDIEI-------DEENNFV--VVSGDYHEGVIGII 341

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           A+R+  K+ +P+   S +++    GSGRS+   DI  +V+    + IL   GGH MA GL
Sbjct: 342 ASRIVHKYKKPAIVFSKKDE-LLKGSGRSLGNIDIFSLVNEC--KDILEGFGGHKMACGL 398

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
            ++  NF +      +              F + G L  S ++  L+D+L+   PYG  N
Sbjct: 399 AIKEENFEKFKIKVNEKIKKYNEEDFFIEDF-VLGELPFSEIDFELLDILKKFEPYGEAN 457

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P P F   + K++ I+ +   H ++   SQ+ + L AI FR  G    E   +       
Sbjct: 458 PKPKF-IASAKIEHIQNLKDNHYKLIL-SQNEKILPAIIFRFDGEFKDEITFK------- 508

Query: 567 VTGHLCVNYWRGSKRCQLRVLDA 589
               +  N + G +  QL + + 
Sbjct: 509 --FSISENNYYGRE-IQLIIEEI 528


>gi|159903451|ref|YP_001550795.1| single-stranded DNA-specific exonuclease [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888627|gb|ABX08841.1| Single-stranded DNA-specific exonuclease [Prochlorococcus marinus
           str. MIT 9211]
          Length = 625

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 146/573 (25%), Positives = 271/573 (47%), Gaps = 30/573 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP-LI 74
           +W++ L                IP I+  +L+ R ++ I+   D + P     +PDP   
Sbjct: 7   KWITPLPVCFSESIPK-----EIPHIIKSILLRRGLTHINDINDLVEP---PDLPDPTDH 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             D D A+ RI+ AI N+EKI I GDYD DG  S +L++ FL     +   +IP R  +G
Sbjct: 59  FPDLDIASERIISAINNNEKIAICGDYDADGMTSTSLLVDFLLRLDGSPIPFIPSRKEEG 118

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG N +++EK   EG +LIITVD G ++   ++ A + GIDVI+ DHH++K       AL
Sbjct: 119 YGLNRNIVEKIRREGIRLIITVDNGVSAIYEIELAQSYGIDVILSDHHEIKENLPNLLAL 178

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++P+ +   S   +L   G+ +L+   I       +K+ L+       DL  + TV D+ 
Sbjct: 179 IHPSTIPYSSPYKYLAGVGLAYLIAQTIAIKRNSTDKLSLSK------DLFCIGTVADMA 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313
            L G NR ++           + GLK+L+ +    +  IT E++ + I P IN+ GRI E
Sbjct: 233 KLKGANRYWLKSWTPNLINTKSKGLKSLLSKAKLNNKNITTEDIAFRIAPRINSVGRISE 292

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            +L  +L +  D   +  +  K++ +N+ R+L+ +    +A + + +  + +     IV+
Sbjct: 293 PSLILKLFLEKDHISIREIVNKIENINKERKLLCNQTTSEAISILESNSEVLN--PFIVL 350

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
             + WH G++G++AA++ E++ RP+  ++ +++G    S RS + F+    +    +  I
Sbjct: 351 AQNHWHQGVIGIVAAKIMERYNRPTAILASDKNGFLRASVRSPKSFNALAALKKCSQ--I 408

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L K GGH+ A G T++      L     + A + +      P  + +  +    +   + 
Sbjct: 409 LHKFGGHSAAGGFTIKAEKISLLQSKLNESASHWLSNNS-KPTIEPECYVEFDQITNQIC 467

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553
           + L+   P+G GNP P+F      +         H  +  + Q    ++AI +       
Sbjct: 468 NYLKLLEPFGQGNPAPLFWTRGCTILKKETFYSGHQLLHLK-QGKSIVKAINWNSNKF-- 524

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
                 +    + +  ++    +  + + Q+ +
Sbjct: 525 -----TTYPSSIDIAFYIDYENYFNTDKHQITI 552


>gi|32491188|ref|NP_871442.1| hypothetical protein WGLp439 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166395|dbj|BAC24585.1| recJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 580

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 146/550 (26%), Positives = 260/550 (47%), Gaps = 20/550 (3%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           +   IP I+ ++  NR +        ++   + L+    +L    KA   +  A+   +K
Sbjct: 19  ENSNIPIILKKIYSNRGIKQ---LKEIDLKTKNLISYKNLL-GIKKATDVLKIALIKRKK 74

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           I+I GD+DVDGA+  AL    L           IP+R  +GYG    ++E    +  ++I
Sbjct: 75  IVIVGDFDVDGASGTALAFLILMKLGAKKVEFIIPNRFKNGYGLTKEIVEFIEKKEGEVI 134

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           +TVD G +S++ +  A  +G+ +I+ DHH        A+A++NPN  +       L   G
Sbjct: 135 VTVDNGISSHEGVNLARKKGMKIIISDHHIPDKILPKAHAIINPNLKNCKFKSKSLSGVG 194

Query: 214 VVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
           V+F +++ +   L++++    N     +L   LDLVAL T+ D+ PL   NR  V +G+ 
Sbjct: 195 VIFYLMISLRSELKKNSWFKDNKIIIPNLAEFLDLVALGTISDLSPLDLNNRILVHQGMN 254

Query: 270 VARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R      G+KALIE  N+  S ++  ++ Y++ P IN  GR+ +  +G +LL+++D +
Sbjct: 255 RIRNGNCRAGIKALIEISNLDISFLSTNDISYILSPKINVAGRLKDMRIGVKLLLTNDIK 314

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLL 386
           +  +LA +L+ LN+ R+++   M +QA       Q       S  V+    WH GI+G++
Sbjct: 315 KARLLAKELNFLNKKRQIIGKKMEKQAFFICTKIQKKTNTTPSGFVLYHQDWHEGILGII 374

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444
           A+R+KE+F  P    +  ++    GS RSIEG +I  ++     +   +++  GGH++AA
Sbjct: 375 ASRIKERFQVPVIIFAKSKNNLLKGSIRSIEGINIRLILKELNNMYPDLIISFGGHSVAA 434

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
            L +E          F  F  N    + +  +   DG L    ++I    +L  + P+G 
Sbjct: 435 ALVIESSKLIYFKKIFLNFIENKKINVSSKRIISSDGELFYDDISIKTATLLLYSSPWGN 494

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGK 563
               P+F     ++    ++N  HL++  +       L  I F V            +  
Sbjct: 495 KFNYPIFDGK-FRIFDQLLINKIHLKIKIQHILGGNILDGICFNVDLKSWP----NKKIN 549

Query: 564 RMHVTGHLCV 573
            + +   L V
Sbjct: 550 FVKLAYTLRV 559


>gi|86605809|ref|YP_474572.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-3-3Ab]
 gi|86554351|gb|ABC99309.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-3-3Ab]
          Length = 742

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 168/610 (27%), Positives = 285/610 (46%), Gaps = 61/610 (10%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +RW  L      +    +++++      A+VL  R + S + A+ F++P+     P    
Sbjct: 3   YRWDLLPTPPQFD--PELSREYG--KYAAKVLALRGLHSREQARAFVDPNQYSPTPAGS- 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D ++A  R++QA    E + I+GD+D DG  + +L++  L          +P R  +G
Sbjct: 58  LPDLERAVARLLQARKRGETLCIWGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +G NP  +++ +++G Q+++TVDCG  +   +  A  QG+DVIV DHH +     PAYA+
Sbjct: 118 HGLNPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVIVTDHHALPDPLPPAYAV 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP RL +      L   GV + +   +Y+ L           +   LDLVA+  V DV 
Sbjct: 178 VNPLRLPEEHPLRFLPGVGVAYKLAEALYQALGIPG-------VEEYLDLVAVGIVADVA 230

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIE---RVNISSPITAENLGYMIGPSINAGGRI 311
            L    R  V +GL V      PGL+AL++       S   TA+++ + + P +NA GR 
Sbjct: 231 VLQRECRYLVQRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRW 290

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            +++L   LL + D Q  + L      LN+  R +   +L++A  +V  +  D+ +   I
Sbjct: 291 DDASLAVELLTTSDPQRAQTLVEHFVALNEECRQLTQQVLQEASQQV--ESLDLARERAI 348

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430
           V+ G  W+PG++G+ AARL E++G P+  I+ +E  G+G GSGRSI G ++ + +     
Sbjct: 349 VLAGSGWNPGVLGIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLVEAIEAVRP 408

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN------ 484
             +L+ GGGH MAAG+ V+      +    ++     V          ++ V++      
Sbjct: 409 --LLLGGGGHPMAAGIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLAS 466

Query: 485 -----ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV---NLAHLQMTFESQ 536
                 + ++  +   L+   P+G GNPNPV A  N +  S+R+    N  HL+    S 
Sbjct: 467 QGRDRVAELD-EVYRQLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGS- 524

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY-WRGSK--------------- 580
                +A+ F   G  L  +      + + +   L     W+G                 
Sbjct: 525 -----RALWFWEAGEELERW---QACQALDIALQLEAEQPWQGKVLAVRPSGDWQAPTVS 576

Query: 581 RCQLRVLDAS 590
              LR+ D  
Sbjct: 577 APSLRIQDYR 586


>gi|86608584|ref|YP_477346.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557126|gb|ABD02083.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 758

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 162/604 (26%), Positives = 279/604 (46%), Gaps = 47/604 (7%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           +RW  L      N    +++++      A+V+  R + + + A+ F++P      P P  
Sbjct: 3   YRWELLPTPPQFN--PQLSREYG--KYAAKVMALRGLHTWEQAQAFVDPEHYSPTP-PAS 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D ++A  R++QA    E + I+GD+D DG  S +L++  L          IP R  +G
Sbjct: 58  LPDLERAVARLLQAREREETLCIWGDFDCDGVTSTSLLLSALQPLGFRVQFSIPLRSTEG 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +G NP  +++ + +G Q+I+TVDCG  +   +  A  QG+DVIV DHH +      AYA+
Sbjct: 118 HGLNPQRLQQVLAQGCQVILTVDCGVGNAAEIAMAQAQGVDVIVTDHHMLPDPLPAAYAV 177

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP RL        L   GV + +   +Y+ L           +   LDLVA+  V DV 
Sbjct: 178 VNPLRLPAEHPLRFLPGVGVAYKLAEALYQALGIPG-------VEQHLDLVAVGIVADVA 230

Query: 255 PLIGLNRAYVVKGLMVAR----RQGNPGLKAL---IERVNISSPITAENLGYMIGPSINA 307
            L    R  V +GL V          PGL+AL   ++        TA+++ + I P +N 
Sbjct: 231 VLQRECRYLVQRGLPVLASTQPSTQRPGLQALLARVDNGQSQGVPTAQDIAFRIAPKLNV 290

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+ +++L   LL + D +  + L  +   L++ RR +   ++++A  +V  +  D+ +
Sbjct: 291 IGRLEDASLAVELLTTSDPERAQALVQRFVALDEERRQLTQQVIQEASQQV--ESLDLTR 348

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVS 426
              IV+    W+PG++G+ AA L E++  P+  I+ +E  G+G GSGRS+ G ++ + + 
Sbjct: 349 EGAIVLAEAGWNPGVLGIAAAHLVEQYNCPTVLIAKDEAAGRGYGSGRSLPGVNLVEAIE 408

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN-- 484
                 +L +GGGH MAA + V+      +    Q+     V          ++ +L+  
Sbjct: 409 AVRP--LLRRGGGHPMAARIQVDLACLAAVQLALQRELAARVSPDQQARALAVEIILDWE 466

Query: 485 ---------ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV---NLAHLQMT 532
                     + ++  +   L+   P+G GNPNPV A  N +  S  +    N  HL+  
Sbjct: 467 LLVSQDRDGVAELD-EVYRQLQLLQPFGHGNPNPVVALMNFRPNSSNLGVSRNGRHLKFE 525

Query: 533 FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +         + F   G  L  +    + + + +   L  +  RG +  Q +VL   P 
Sbjct: 526 LQGSPGSR--TLWFWQAGEELERW---QKCQALDIALQLEADD-RGKQPWQGKVLAVRPS 579

Query: 593 -EGH 595
            E  
Sbjct: 580 GEWQ 583


>gi|159029841|emb|CAO90895.1| recJ [Microcystis aeruginosa PCC 7806]
          Length = 760

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 150/591 (25%), Positives = 267/591 (45%), Gaps = 39/591 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPD----IVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
            W            L I Q +  P+    +VA++L +R V      + FL+         
Sbjct: 3   NWQIPPSVTLPQEFLKIVQDY-TPESDGSVVAQILWHRGVWDRATLRTFLDEKAYQS-KT 60

Query: 72  PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127
           P     + + A +R+ +A+   EK+ I+GD+D DG  + +++   L          + YI
Sbjct: 61  PFDFGQEMNFAVKRLEKALNKGEKVTIWGDFDADGVTATSVLWEGLGQFFPPYQQLDYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDR  + +G N   +EK  ++G +LI+T D GST+   + YA   GID+I+ DHH +  E
Sbjct: 121 PDRQKESHGLNCPGIEKLAHQGTRLIVTCDTGSTNIAEIDYANGLGIDIIITDHHTLPDE 180

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                AL+NP    +     HL    V + ++  +Y  L    + P    L +LLDLVA+
Sbjct: 181 RPEVIALINPRYFVETHPFYHLSGVAVAYKLVEAMYLTLADIPRKP----LENLLDLVAI 236

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
             + D+V L G  R    KG+   +     G+K L++  N +      ++ + IGP INA
Sbjct: 237 GLIADLVKLTGECRYLAQKGMQKLQNTQRLGVKKLLDLCNKTGD-RPMDISFGIGPRINA 295

Query: 308 GGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
             R  G++     LL S+D +    LA + ++ N  R+ ++  +++Q + K+  +  D+ 
Sbjct: 296 VSRIYGDARFCVELLTSEDEKRCHELAEQAELANIRRQEIQRDIIKQVQKKL--ERIDLS 353

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
             +VI+++  +W  GI+GL+A ++ +++ RP+  +S  E     GS RSI   D+ ++VS
Sbjct: 354 TTNVIILDDPQWPAGILGLVAGQIAQEYQRPTILLSTSEPPFAQGSARSIREIDLYQLVS 413

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNA 485
              +  +L + GGH +AAGL++   N     +   +      +     +   ++D V+  
Sbjct: 414 S--QSHLLHRFGGHPLAAGLSLTIENLPLFIEGINQQLRRTGIDLTSLSSQIEVDAVVTV 471

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-----SIRVVNLAHL---QMTFESQD 537
           S +  +L   L+   P G GNP P     N   Q     ++  +    +   + TFE  D
Sbjct: 472 SQLGKSLFRELKLLEPCGMGNPTPKLLIQNCYFQNLWHNNLEDLKGKKIAYPRTTFEIWD 531

Query: 538 S---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
           S   +    + +  +   +      +   R      L  N  +     +L 
Sbjct: 532 SSIEQGFPGMWWGHHKDEI------AVDTRYDAVVELDFNTSKNRYEVRLI 576


>gi|154148993|ref|YP_001405746.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           hominis ATCC BAA-381]
 gi|153805002|gb|ABS52009.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter
           hominis ATCC BAA-381]
          Length = 524

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 152/524 (29%), Positives = 256/524 (48%), Gaps = 29/524 (5%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +P P  L D  KAA RI +AI N+EKI I GDYDVDG  S  +M  FLS    N  + IP
Sbjct: 26  IPLPSDLKDTYKAANRIKEAINNNEKIAIIGDYDVDGVVSSVIMNDFLSELGANFIVKIP 85

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  DGYG NP ++ +   +G  LIITVD G ++ DA +    + ID+I+ DHH      
Sbjct: 86  NRFTDGYGLNPQMLNEL--DGINLIITVDNGISANDAAEICYKKRIDLIITDHHMPPPTL 143

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
             AYA++NP + D       +C A V + ++  +           +N+D+  LLDL+ +A
Sbjct: 144 PKAYAIINPKQNDCTFPNVEICGAQVAWYLIGAL------KEICNVNYDMSELLDLLIIA 197

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            + D++ L  LNRA +  G+           KA+ E          +++ Y I P IN+ 
Sbjct: 198 IIADMMELRDLNRALLKFGIKKLNNSKRACFKAIRE-HYFKKKFEFDDISYTIAPLINST 256

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           GR+ +++L  + L S + +E      ++  +N++R+  E  + +Q+   V       +  
Sbjct: 257 GRMDDASLSYKFLCSKNIKEANYYLDQITKINRSRKEEEHILYKQSLQNV------DEND 310

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSF 427
            ++V  G+ WH G++G++A+RL + + +P+   S + +  +  GS RSI  FDI +++  
Sbjct: 311 HILVTWGENWHEGVIGIVASRLTKNYKKPAIVFSIDKDANRAKGSARSIGKFDILELI-- 368

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
           A ++ +L   GGH  AAGL +   N             N V     T   +I G LN S 
Sbjct: 369 ASQKELLEGFGGHKGAAGLVINPQNLSEFKRKINNACFN-VNHGNFTFSDEILGELNLSE 427

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545
           ++  ++ +LE   PYG  NP P+F   N  +++I+++     H ++  E +++   + + 
Sbjct: 428 LDNEMLKILEFYEPYGQKNPRPLFKLENAIVKNIKIIGKEKNHAKIAIE-KNNAIREGLF 486

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           F           +   G        +  N +RG    +L + + 
Sbjct: 487 FNFN-------FLPQVGDSFSFIASIGKNSFRGEISPELIIKEI 523


>gi|262066531|ref|ZP_06026143.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379765|gb|EFE87283.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium
           periodonticum ATCC 33693]
          Length = 554

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 141/556 (25%), Positives = 255/556 (45%), Gaps = 19/556 (3%)

Query: 41  DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           +++  +L  R        + F+NP  +    +P    + +K   RI+ A  N EKI I+G
Sbjct: 9   ELIKDLLEKRGNESQHQIEKFMNPEYKDFR-NPFDFENMEKIVNRIISARENKEKIFIYG 67

Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           DYDVDG +  A + RF +   ++ N YIP R    YG +   ++ F     +L+ITVD G
Sbjct: 68  DYDVDGISGTAFLTRFFNEIGIDTNYYIPSRNETDYGVSKKSIDYFHKRQGKLVITVDTG 127

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
             + + ++YA + GI+VIV DHH+   E+     L    +L       +L  AGV F + 
Sbjct: 128 YNTIEDVRYAKSLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSGAGVAFKLA 187

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             +   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + +     GL
Sbjct: 188 QGLCMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKIIKNTKVKGL 242

Query: 280 KALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
             L+  +      +T  ++ Y I P IN+ GR+G S +G+   + +D  +L  +  ++  
Sbjct: 243 SYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKEDEFDLYNIIEEMKE 302

Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
            N+ RR +E  + + A  K+      + + SVI +   +WHPG++G++++RL  KF  P 
Sbjct: 303 QNRQRRTLEKYIYDDAMRKIKNLKLPLDKLSVIFLSSAKWHPGVIGVVSSRLTIKFNVPV 362

Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
             ++  +   G  S RS+   +I      +  + +L + GGH +AAG  V +     L +
Sbjct: 363 ILVA-IDGDYGKASCRSVG--NISIFNLLSNVKNLLERYGGHDLAAGFVVHKEKLNELRE 419

Query: 459 FFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
           +F +    +      +        D  L+   +     D +E  GP+G+ NP+P+F   +
Sbjct: 420 YFIRTIPKLKLEDNRSKKDYEKSFDFELSVKDLGEKTFDFMEKMGPFGSNNPHPLFFDSD 479

Query: 516 HKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
            K ++I+   +          +D+ +  A+ F +      +++     K  ++  +    
Sbjct: 480 LKFENIKRFGVDFRHFNGIIYKDNVSYNAVGFELADEIKEDYI----NKIYNIVYYPEKI 535

Query: 575 YWRGSKRCQLRVLDAS 590
                +  Q+ +    
Sbjct: 536 ILNNEEVTQIILKSIK 551


>gi|317499047|ref|ZP_07957328.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893697|gb|EFV15898.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 498

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 137/502 (27%), Positives = 236/502 (47%), Gaps = 28/502 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     +   N+   I +K  I  ++AR++ NR+V   +  + +L   +  +  DP ++
Sbjct: 4   QWYLYKKKADFNQ---IGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDI-SDPFLM 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +    + Q +   + I I  DYDVDG  S  ++ + +       +  IPDR+ DGY
Sbjct: 60  KGVKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLGGKIDFQIPDRMKDGY 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185
           G N +++EK + +    I+T D G  + DA+ Y    G+ +I+ DHH V           
Sbjct: 120 GINENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRK 179

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               PA  ++NP +         LC AGV F  +   Y+ + +D        L  LL ++
Sbjct: 180 EVLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEEDES-----QLEELLSML 234

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304
           A+ATVCDVV L G NR +V +GL   +   N GLKAL+   + +   I +  LG+++GP 
Sbjct: 235 AIATVCDVVDLTGENRIFVKEGLRRIKDTQNIGLKALLNVHDLMDKQIQSYALGFIVGPC 294

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+  +     L + +D ++ +  A +L  LN  R+ M    +++A  +      +
Sbjct: 295 INASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE--YE 352

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
            +   V+V+     H  I G++A R+K++   P+F ++  ++G   GSGRSIEG+ +   
Sbjct: 353 AKGDKVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEGI-KGSGRSIEGYSM--F 409

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                 + +  K GGH MAAG ++++           +     +         +ID  + 
Sbjct: 410 EEMMKVKEVFTKFGGHPMAAGCSLKKEKLQEFRKKINENC--TLEKKDFAKKVQIDIDMP 467

Query: 485 ASAVNIALIDMLESAGPYGAGN 506
              + + LI  L    P+G  N
Sbjct: 468 VDYITMDLIHQLSVLEPFGKEN 489


>gi|258512064|ref|YP_003185498.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478790|gb|ACV59109.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 669

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 158/564 (28%), Positives = 253/564 (44%), Gaps = 22/564 (3%)

Query: 30  ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           A  +     +P  VAR+L  R     D  +  L  +      DP+  TD   A  RI+QA
Sbjct: 15  ARRLASVFEMPMRVARLLAARGYKDPDEVRRLL--TADEPWSDPMDFTDMRAACERILQA 72

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           +   E I + GDYDVDG ++  ++ + +         +IP+R+ DGYG +  L+E   NE
Sbjct: 73  VRRREIIAVMGDYDVDGVSAAVIVTKAIQALGGRVTCHIPERVSDGYGFSLRLLEDAKNE 132

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV-NPNRLDDLSGQG 207
           GA LI+TVD G  + +A+  A   G+ V+V DHH+   E +P    V +  R  D     
Sbjct: 133 GAALIVTVDNGIRAVEAISAALADGLSVVVTDHHEPGDEIVPDGVPVLHFTRHRDPISAK 192

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
             C A V + + + +   L        +     L  L AL T+ D++PL+G NR  V +G
Sbjct: 193 RGCGAFVAWKLAIQL---LDAAGVPKADALRRWLTGLAALGTLADMMPLVGENRRLVREG 249

Query: 268 LMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           + V   +G+ G + L +   +    + A ++ + + P +NA GR+  ++L  RLL+ +D 
Sbjct: 250 IRVLATEGSAGWRVLCDCARVSRDTLGASDVSWRLVPRLNAAGRMAHADLAYRLLMEEDE 309

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
           +E + LA +L+VLN  RR    A   +A   V  +          +V    W  G+VGL+
Sbjct: 310 EEAKRLAEELEVLNAKRRQAVDAAFAEAVEAVEREHG---PNPAAIVVAGAWPLGVVGLI 366

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           A RL + +  P+ A++   DG   GSGR+ EG  +  ++S   E   L   GGH  A G 
Sbjct: 367 AGRLAQTYACPAIALADMGDGTLRGSGRAPEGASMLDLLSRCAEF--LHHYGGHEAAVGC 424

Query: 447 TVERVNFGRLCDFFQKFAHNIVP--ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
            ++            + A    P    +  P+   D  L  S     L+  LE   P+G 
Sbjct: 425 GLDASQLPAFRAALLEAAVAARPTGTAVDPPMAIADDYLMLSESADELLLWLERLAPFGP 484

Query: 505 GNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
            +    F     ++     +    HL++T    D+   +A+ FR       + + +    
Sbjct: 485 EHEPFRFFVGPVEIVRCARMGGGEHLRLTLAEGDAHQ-EAVWFRA-----PDRIARDTTG 538

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587
                  L  N WRG+ R QLR+ 
Sbjct: 539 LWAFIVELVPNAWRGTVRPQLRIE 562


>gi|229047950|ref|ZP_04193526.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH676]
 gi|228723407|gb|EEL74776.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH676]
          Length = 558

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 142/524 (27%), Positives = 223/524 (42%), Gaps = 24/524 (4%)

Query: 17  RWVSLLGQ----EGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71
           RW+             R +   +   +   + + L   N+        FL PSI  L  D
Sbjct: 8   RWIQQDKNLEEHPNKARIMYFARSFNLHPSLIQYLFFHNIKNWQDIYQFLYPSINNLY-D 66

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +  D  KA  RI+ AI N E I IFGDYD DG  S  L+ + L     N +  +P R 
Sbjct: 67  PFLFNDMKKAVTRILNAIANKENIFIFGDYDCDGITSTTLLFQCLQKLGANVDFKLPLR- 125

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG  P+ + K  ++   LIITVD GS+++DA++ A   GIDVIV DHH++  +    
Sbjct: 126 EEGYGLTPTAVHKIADKNISLIITVDNGSSAHDAMKIAKQYGIDVIVTDHHEITEKHPDC 185

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA +NP R D       L   GV F +   ++       +   N      ++L AL T+ 
Sbjct: 186 YAFINPKRTDSTYPFSDLAGVGVAFKLAHALH----ITTQTNWNQSYSKYIELAALGTIA 241

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           D++PL   NR     GL       +   K ++  +  +  IT+  +GY I P  NA GRI
Sbjct: 242 DLMPLSDENRIICHLGLRKINTNPSYAFKLILNTMKRNQ-ITSSTIGYQIAPLFNALGRI 300

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            + NL   +L      E       L  LN+ R+ M  +   + +  + ++   +    VI
Sbjct: 301 ADPNLAVHVLTDTHINE--KSISTLFQLNEKRKQMTVSQFSECQRIICSK--KLHDNHVI 356

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV G+ +H G++G+LA+++ E + +P+  IS    G    S RS+ G +   + + +   
Sbjct: 357 VVHGE-FHHGLIGILASKITEIYQKPAIVISNTGTG----SCRSVNGTNFSIINTLSRCS 411

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
             L K GGH  AAG ++E                         P          +     
Sbjct: 412 EHLSKYGGHQAAAGFSIEMKEEVLDKFHQNIQVSATF-EEPIMPTKLYFNKHCPNEFVQY 470

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF 533
           L   +    P+G     P+F  P  +++          HL++  
Sbjct: 471 LYPEIFLLEPFGQRFEQPIFLSPPLQIEKFETFGANKNHLRLYL 514


>gi|166363550|ref|YP_001655823.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa
           NIES-843]
 gi|166085923|dbj|BAG00631.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa
           NIES-843]
          Length = 760

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 149/591 (25%), Positives = 265/591 (44%), Gaps = 39/591 (6%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPD----IVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
            W            L I Q +  P+    +VA++L +R V  +     FL+         
Sbjct: 3   NWQIPPSVSLPQEFLKIVQDY-TPESDGSVVAQILWHRGVRDMATLGTFLDEKAYQS-KT 60

Query: 72  PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127
           P     + + A +R+ +A+   EK+ I+GD+D DG  +  ++   L          + YI
Sbjct: 61  PFDFGQEMNFAVKRLEKALNKGEKVTIWGDFDADGVTATTVLWEGLGQFFPADQQLDYYI 120

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           PDR  + +G N   +EK  ++G  LI+T D GST+   + YA + GID+I+ DHH +  E
Sbjct: 121 PDRQKESHGLNCPGIEKLAHQGTSLIVTCDTGSTNIAEIDYANSLGIDIIITDHHTLPDE 180

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                AL+NP    +     HL    V + ++  +Y  L    + P    L +LLDLVA+
Sbjct: 181 RPEVIALINPRYFVETHPFYHLSGVAVAYKLVEAMYLTLADIPRKP----LENLLDLVAI 236

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
             + D+V L G  R    KGL   +     G+K L++  N +      ++ + IGP INA
Sbjct: 237 GLIADLVKLTGECRYLAQKGLKKLQNTQRLGVKKLLDLCNKTGD-RPMDISFGIGPRINA 295

Query: 308 GGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
             R  G++     LL S+D +    LA + ++ N  R+ ++  +++Q + K+  +  D+ 
Sbjct: 296 VSRIYGDARFCVELLTSEDEKRCHELAEQAELANIRRQEIQRDIIKQVQKKL--ERIDLS 353

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
             +VI+++  +W  GI+GL+A ++ +++ RP+  +S  E     GS RSI   D+ ++VS
Sbjct: 354 TTNVIILDDPQWMAGILGLVAGQIAQEYQRPTILLSTSEPPFAKGSARSIREIDLYQLVS 413

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNA 485
              +  +L + GGH +AAGL++   N     +   +      +     +   ++  V+  
Sbjct: 414 S--QSHLLHRFGGHPLAAGLSLALENLPLFIEGINQQLRRTGIDLTSLSSEIEVAAVVTV 471

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL-----QSIRVVNLAHL---QMTFESQD 537
           S +  +L   L+   P G GNP P     N        +++       +   + TFE  D
Sbjct: 472 SQLGKSLFRELKLLEPCGMGNPTPKLLIQNCYFHNLWHKNLEDFKGRKIAYPRTTFEIWD 531

Query: 538 S---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
           S   +    + +  +   +      +   R      L  N ++     +L 
Sbjct: 532 SSIEQGFPGMWWGHHKDEI------AADTRYDAVVELDFNTYKNRYEVRLI 576


>gi|319937502|ref|ZP_08011907.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp.
           29_1]
 gi|319807342|gb|EFW03951.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp.
           29_1]
          Length = 540

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 132/570 (23%), Positives = 253/570 (44%), Gaps = 43/570 (7%)

Query: 26  GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
              +   I  ++ +  ++A+V+       +  +  L+P +  +  D  +  + D    RI
Sbjct: 7   EPKKYQDIQNQYQVNSLLAKVIDIHEYDQETLQTLLSPRL--IYHDFSLFEEADMTLERI 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
            +AI N EKI I+GDYD DG  +  ++++  +   V    +IP+R  DGYG N + +++ 
Sbjct: 65  HEAIENEEKICIYGDYDCDGILATTILVQAFAELGVQVGYHIPNRFDDGYGLNAARVKQM 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
              G  LIITVD G  ++DA++ A   G+DVI+ DHHQ  ++   A + ++     +   
Sbjct: 125 AQRGYSLIITVDNGVKAFDAVECANELGVDVIITDHHQFDNDLPDAMSFIHTKLSPE-YP 183

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
              +    V + +   +     +            L  L A+ T+ D++PL+  NR+ V 
Sbjct: 184 FKEISGGFVAYKLASALLEKQDK-----------YLYCLAAITTISDMMPLLDENRSLVK 232

Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLI 322
           K L   + +  P L+ L   +      T   +G+ I P IN+ GR+ E    N+  +  +
Sbjct: 233 KALTFMKSEKYPSLELL---LGDQQSYTTTTIGFTIAPKINSFGRLPELCNPNILVKYFL 289

Query: 323 SDDSQELEML-AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
            D  ++L M  A     +N  R+ + +     A  K+  +         +    +  H G
Sbjct: 290 KDAPRDLMMKVAQMATQINSKRQALTNEQYTLASEKMNDE--------FLYWASEDVHEG 341

Query: 382 IVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           +VGL+A +   ++ RPSF + +++  G   GS RS++GF + +  +        V  GGH
Sbjct: 342 LVGLIAGKYTRQYERPSFVMHYDKQLGIYKGSARSVDGFSLHEFFTA--HSEQFVAFGGH 399

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           ++A G +++  +F       ++   ++     T  +      ++ + ++I  I+ L    
Sbjct: 400 SLAGGFSIDEDHFESFYHCIEENLKDVELHATTNALL-----IDENDLSIENIESLAMLE 454

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           P+G GN  P++   +  +     +    HL+M  +   ++ + A+ F+        F   
Sbjct: 455 PFGMGNEEPLYLLKDVPVMKFYQLSGGKHLKMDIDFPRTK-MTALYFQQGQL----FDEL 509

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
              K + + G L VN +R  K     + D 
Sbjct: 510 KDKKYISIVGTLSVNEFRNQKSINFIIKDI 539


>gi|218440693|ref|YP_002379022.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7424]
 gi|218173421|gb|ACK72154.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7424]
          Length = 785

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 155/620 (25%), Positives = 281/620 (45%), Gaps = 52/620 (8%)

Query: 7   LGVECSI-SGFRWVSLLGQEGINRALAITQKHAIP---DIVARVLVNRNVSID-YAKDFL 61
           +  E S  +  RW  +   E  +  L   +++A        A++L +R +        FL
Sbjct: 1   MNNEQSTMNDTRWQIITPSEIPSWFLETVKRYAPHSDGKYAAQLLWHRGIQDPLQLPGFL 60

Query: 62  NPSIRLLMPDPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC- 119
           +P +      P     +   A +R+ QA    EKI I+GD+D DG  + +++   L    
Sbjct: 61  DPDVYQ-PSSPFAFGQEMKWAIQRLQQAREKGEKITIWGDFDADGITATSVLWDGLGEFF 119

Query: 120 --SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177
              +  + YIP+R  + +G N S ++   NEG  LII+ D GST+   + YA   GID+I
Sbjct: 120 PQYLQLDYYIPNRFTESHGLNCSGIDYLANEGTSLIISCDTGSTNLTEIDYAHQLGIDII 179

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237
           + DHH +  +  P  A++NP    +     HL    V + ++  +Y+ L    + P    
Sbjct: 180 ITDHHTLPEDRPPVIAIINPRYFAESHPLYHLSGVAVAYKLIEALYQSLPDIPQNP---- 235

Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPIT 293
           + +LLDLVA+  + D+V L G  R    KG+ + ++Q      PG+  L+E    +    
Sbjct: 236 VENLLDLVAIGLIADLVQLSGDCRFLAQKGIQILQQQLKNPSRPGVARLLELCQRNGD-R 294

Query: 294 AENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352
             ++ + +GP INA  R  G++     LL S D +  E LA++ ++ N  R+ ++  ++ 
Sbjct: 295 PTDISFGLGPRINAVSRIHGDAKFCVELLTSRDKKRCEKLALETELANTRRKSLQKDIMA 354

Query: 353 QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--- 409
           Q + K+     D+   SVIV+E  +W  G++GL+A ++ +++ RP+  ++   +      
Sbjct: 355 QVQKKLSQL--DLSTTSVIVLEDPQWQSGVLGLVAGQIAQEYSRPTILLTTGNEDDNANS 412

Query: 410 -----IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
                 GS RS+   D+ ++V  A +  +L + GGH +AAGL++   N     +   +  
Sbjct: 413 TLKLARGSARSVNSIDLYQLV--ASQSHLLHRFGGHPLAAGLSLAVENISLFREGINQQF 470

Query: 465 HNIVPALITT-PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ---- 519
                 L       + D ++  + +  AL   L+   PYG GNP P     N   +    
Sbjct: 471 RQQHGDLALKGAGIEADLIVTVAELGKALFWELKLLEPYGMGNPIPKLLLQNCWFENTWH 530

Query: 520 -SIRVVNLA---HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
            + + +      +++ TF   D   +E    + +  Y   L +        R  V   L 
Sbjct: 531 NNPKDLRGKTIQYIKTTFSLWDDSVNEGFPGVWWGHYKDELPQ------NTRCDVIVELD 584

Query: 573 VNYWRGSKRCQLRVLDASPV 592
            N ++  K+ ++R++   P 
Sbjct: 585 FNVYQ--KQYEVRLIAVRPS 602


>gi|3063673|gb|AAC14136.1| ssDNA-specific exonuclease [Chlamydophila caviae]
          Length = 519

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 134/497 (26%), Positives = 230/497 (46%), Gaps = 9/497 (1%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             KA  R++ A   +E +M++GD DVDG   VAL++ FL    +  +      ++  YG 
Sbjct: 1   MTKAIERLLLAKERNEHVMVYGDSDVDGMTGVALLVEFLRSIDMKVSYCFLGALLKHYGE 60

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
             SL+ K   E   L+ITVDCG T+   +     QGIDVI+ DHH    +     A +NP
Sbjct: 61  PSSLIAKMKEEKVTLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGKIPHCIATLNP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
              D       L   GV F +   +   LR++N   L  D   LLDLV L TV DV  L+
Sbjct: 121 KLRDRAYPNKELTGVGVAFKLARGVLNALRKENP-KLKVDTKHLLDLVTLGTVTDVGTLL 179

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNL 316
           G NR  V  G+    +    GL  L     +    +T+ ++   I P +N+ GR+ ++  
Sbjct: 180 GENRTMVRHGIKEIAKGSRLGLHKLCIFAGVKPSEVTSTDIVLKISPKLNSLGRLADAAK 239

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
           G  LL++ D +  + +   LD +N+ R+ +E+ +      K+L    +I + + IV+  +
Sbjct: 240 GVELLLTQDPETADEIIQYLDKINRERQKIEADVFHDV-QKILKNKPEIVKQAAIVLSSN 298

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WH  ++ +++ARL + + +P   IS +  G G GS R+I  F +  ++       + + 
Sbjct: 299 DWHARVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQKC--SSLFIS 355

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  AAG+ +           F    ++ +          +D   +   ++  L+  +
Sbjct: 356 YGGHDFAAGIIINEDQVEAFRKKFIHLVNSSLKKDKAVLTLPLDAQADFDEIDHDLLSSI 415

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           +   P+G GNP PVF    H+++  +++   HL++   +     L+ IAF +      E 
Sbjct: 416 DLFEPFGKGNPMPVFYTIVHQVRYPKLLPGNHLKLYL-NHGERNLEGIAFGLGDRI--EA 472

Query: 557 LMQSRGKRMHVTGHLCV 573
           L  +  K + +     +
Sbjct: 473 LKANWNKPLELAYTPRL 489


>gi|224542326|ref|ZP_03682865.1| hypothetical protein CATMIT_01505 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524775|gb|EEF93880.1| hypothetical protein CATMIT_01505 [Catenibacterium mitsuokai DSM
           15897]
          Length = 537

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 134/561 (23%), Positives = 246/561 (43%), Gaps = 38/561 (6%)

Query: 31  LAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
             I QK+ +  ++A+V+ ++ +     + F++P +  +  D  +  + D+   RI +AI 
Sbjct: 12  EEIMQKYGVNSLMAKVIESKKLDQKQFEAFMDPHL--IYHDFSLFEESDETLERIEEAIE 69

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
           N EKI I+GDYD DG  +  ++++      V    +IP+R  DGYG N + +E+   +G 
Sbjct: 70  NKEKICIYGDYDCDGILATTILVQAFHERGVEVGYHIPNRFTDGYGLNTTRVEQMAEKGY 129

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            LIITVD G  ++DA++ A   GIDVI+ DHH   +E   AY++++            +C
Sbjct: 130 SLIITVDNGIKAFDAVEKAGELGIDVIITDHHTFDAEVPVAYSIIHTKMSP-RYPFKEIC 188

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
              + + +   + +                L  L A+ T+ D++PL+  NR+ V +GL  
Sbjct: 189 GGFIAYKLAAALLKH-----------HDPYLFTLAAITTLSDMMPLLDENRSLVKRGLQF 237

Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            ++   P L+ L      S       +G+ I P INA GR+    L + + +     +  
Sbjct: 238 MKQYKYPALELL----KGSRDYDVTTIGFTIAPRINAFGRL--PELVNPVCLVKYFLKGT 291

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
             A    V N   ++      +     +  +      +  +    +  H G+VGL+A + 
Sbjct: 292 NPAYLEKVSNYASKVNSKR--QSMTTSLYKEAVTDTTSPCLFYGSEDMHEGLVGLVAGKY 349

Query: 391 KEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
             ++ +P+F + ++       GS R I+GF+I         E + V+ GGHAMA G T+ 
Sbjct: 350 AREYEQPAFVMHYDSKKEIYKGSARGIDGFNIYDFFK--HHEDLFVQYGGHAMAGGFTIT 407

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
           + N+  + D      +++           I   +      I  ++ L    PYG  N  P
Sbjct: 408 KSNYPLVYD---ALVNDLQGCHFEVSESVI--PITLDDTTIHNVETLSLLAPYGEENKAP 462

Query: 510 VFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           +F   +     +  ++   HL+     +    + A+AF        ++      + M + 
Sbjct: 463 LFILEDVTCSRVDRLSEGKHLKFHLGDEQ---VSALAFNKGQ----KYEEVVHKESMTLV 515

Query: 569 GHLCVNYWRGSKRCQLRVLDA 589
           G L +N +RG+K     V + 
Sbjct: 516 GTLSINVFRGNKSINFIVEEI 536


>gi|313897422|ref|ZP_07830965.1| putative single-stranded-DNA-specific exonuclease RecJ [Clostridium
           sp. HGF2]
 gi|312957792|gb|EFR39417.1| putative single-stranded-DNA-specific exonuclease RecJ [Clostridium
           sp. HGF2]
          Length = 535

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 241/564 (42%), Gaps = 46/564 (8%)

Query: 28  NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87
            R+  I + H +  + A+VL +R +  +   + L    +  + DP       + A RI Q
Sbjct: 9   ERSQQIQEMHHVSALCAKVLASRGLKDEQIAELLQ---KPQLADPFTANGMQEVATRIYQ 65

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147
           A  N E++M+ GDYD DG  S A+++  L    + A  YIP+R  +GYG     +E    
Sbjct: 66  AKQNKERVMVCGDYDADGICSTAILVDALRRYGIQAGFYIPNRFAEGYGLQKHTVELAHE 125

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
           +G  L+ITVD G  + DAL  A N+G+DVIV DHH +  E  P   L++P  + +     
Sbjct: 126 KGYSLLITVDNGVKALDALTEARNRGVDVIVTDHHAMDEEF-PCLYLLHPFLMGERFE-- 182

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
            L  AGV   +   +   +++             + L  +A + DV+PL    RA V  G
Sbjct: 183 TLSGAGVALEISRALLGEVKEH------------VVLACVAAIADVMPLRQETRAIVQLG 230

Query: 268 LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES---NLGSRLLISD 324
           L   R+     ++ L          T   + + I P +N  GR+ +    N   R L+S 
Sbjct: 231 LQYLRQGICQPIQLLANDRYPKWDETL--IAFQIVPKLNTTGRLADIANANNTVRYLLST 288

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384
           + ++L+ +A ++  LN  R+ M   M++ A   V  +          ++  D +H G+ G
Sbjct: 289 NLEQLQHMAKQIRKLNDRRKTMSDDMVKVARTLVRPEY------RFQLLFHDSFHEGMAG 342

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444
           L+A +L E+   P    +  E     GS RS++  D+            L   GGH  AA
Sbjct: 343 LVAGKLSEELQLPVMVAAQREQ-MFKGSIRSLDLLDLTTFFDACRP--SLSAYGGHKAAA 399

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGPYG 503
           G+     N        Q + +  +  +        D + +      +A ++ L   GP+G
Sbjct: 400 GIGFPYENK----QIVQDYVNTRMEGIHFQQEKSYDVIPIRVQEATLAEVESLSVLGPFG 455

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562
            G   P+F      +Q  R++    H +         +L+A+ FR        +      
Sbjct: 456 CGFEEPLFYLEEASVQGCRLLGNREHAKWILSD----SLEAMYFRCGNA----YERLHEK 507

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRV 586
             ++  G+L +N + G K+  + V
Sbjct: 508 NNVNFIGNLRINSFMGRKKVNIFV 531


>gi|328957579|ref|YP_004374965.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp.
           17-4]
 gi|328673903|gb|AEB29949.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp.
           17-4]
          Length = 699

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 243/501 (48%), Gaps = 27/501 (5%)

Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           G  S A++   +       N YIP+R  DGYGPN +  E+ I +G QLI+T D G   +D
Sbjct: 17  GVTSTAVLKETIEMIGGEVNYYIPNRFTDGYGPNVAAFERLIEQGTQLIVTCDNGVAGHD 76

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
           A++ A   GIDVIV DHH++ S    AYA+++P         G L   GV F +   +  
Sbjct: 77  AIERAKALGIDVIVTDHHELPSTLPAAYAVIHPRHPKGSYPFGELSGVGVAFKLATALLG 136

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
            +            + LLDLVAL T+ D+V L   NRA V++GL+V +     GL AL +
Sbjct: 137 EIP-----------VELLDLVALGTIADLVSLTDENRALVMQGLVVLQNTQRIGLSALFK 185

Query: 285 RVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
              I    I  E +G++IGP +NA GR+G+++    LL + D      LA  +   N  R
Sbjct: 186 LAKIKREEIDEETVGFIIGPRLNAVGRLGDASPAVELLTTFDDDVAASLAQLVQEKNIER 245

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS- 402
           +   S +  +A   +     D   + V V+  + WH G++G++A+++  K G+P+  ++ 
Sbjct: 246 QAYVSTITNEAFDMIEKSDVD---SDVYVLAKEDWHEGVLGIVASKIVGKTGKPALVMNI 302

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
               G   GSGRSI  F +   +    E       GGH MAAGLTV   N  R+     +
Sbjct: 303 DPAKGLAKGSGRSIPAFHLYNALDNVREFTT--TFGGHHMAAGLTVPLENIDRIQSELNQ 360

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
           +A     +       +IDG L+     + +++ L    P+G  N  P F F N + Q +R
Sbjct: 361 YAIENGASQELGEETQIDGQLSIKEATVEVVEELNRLAPFGTDNLKPTFLFKNVESQDVR 420

Query: 523 VVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
            +     HL+M   ++D+  L  I F+    P+ E +       + V G L +N W GS+
Sbjct: 421 RIGGDQAHLKMKL-AEDNAFLDVIGFQFG--PVAEEIGLHSA--ISVVGKLAINEWNGSR 475

Query: 581 RCQLRVLDASPVEG-HHFAKK 600
           + Q+ + D + +EG   F  +
Sbjct: 476 KTQIMLEDLA-IEGVQVFDSR 495


>gi|16330150|ref|NP_440878.1| single-strand-DNA-specific exonuclease RecJ [Synechocystis sp. PCC
           6803]
 gi|1652638|dbj|BAA17558.1| single-strand-DNA-specific exonuclease; RecJ [Synechocystis sp. PCC
           6803]
          Length = 759

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 148/614 (24%), Positives = 270/614 (43%), Gaps = 52/614 (8%)

Query: 16  FRWVSLLGQEGINRALAITQKH-AIP--DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71
           FRW  +         +   ++H         A++L  R + S D    FL+P        
Sbjct: 4   FRWQLIPPVTPPAIFVEQVRRHCGQSSGQFAAQLLWQRGIQSADQLGGFLSPDCYT-PTS 62

Query: 72  PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127
           P     +   A +R+ QA+   EK+ I+GD+D DG  S A++   L             I
Sbjct: 63  PWEFGQEMKWAVQRLGQAMAQKEKVTIWGDFDADGITSTAVLWEGLGQFFPQDSQLTYTI 122

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R+ + +G N   +E+   +G +LI+T D GST+ D + YA   G+DVIV DHH +  +
Sbjct: 123 PNRLRESHGLNRPGLERLATQGTKLIVTCDTGSTNLDEIVYAQQLGMDVIVTDHHTLPDD 182

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                A++NP    D     +L    V F ++  +Y       + P    L  LLDLVA+
Sbjct: 183 RPEVVAIINPRYFADGHPLFNLSGVAVAFKLVEALYNQYPTVPQQP----LEDLLDLVAI 238

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQG------NPGLKALIERVNISSPITAENLGYMI 301
             + D+V L G  R    +G+   R Q        PG+ AL+   N +      ++G+ I
Sbjct: 239 GLIADLVTLQGDCRYLAQRGIAQLRTQKDPATATRPGIHALLNLCNRNGD-RPTDIGFGI 297

Query: 302 GPSINAGGRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           GP INA  RI G+++ G  LL S D++    LA + + LN  R+ ++ +++ + + ++  
Sbjct: 298 GPRINAISRIKGDASFGVELLTSRDTKVCNQLAAEAETLNSRRKGLQKSVIIEIDQRL-- 355

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           Q  D+    V+V+   +W  G++GL A+ + +  GRP+  ++ ++     GS RS+   D
Sbjct: 356 QNIDLSTTGVVVLTDPQWPTGVLGLAASHVAQTCGRPAILLNTQDGKIAKGSARSVANID 415

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA-HNIVPALITTPVFKI 479
           +  ++    +  +++  GGH  AAGL++         +   +    +    +   P+  +
Sbjct: 416 LYALLHS--QRHLMLGFGGHPFAAGLSLPLDKLPLFTEAVNQQFWQSYGAQISLDPILAV 473

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ--SIRVVNLA------HLQM 531
           D  +  + +   L        PYG GNP P     N ++   S R +         +L+ 
Sbjct: 474 DLQVKVADLGQDLFREFNLLEPYGMGNPAPKLLLENVQVGRPSFRNIKDRTGNKVSYLKT 533

Query: 532 TFE--------SQDSETLQ--AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           +F           D + +Q   + +  +   L +       + + +   L  N +   ++
Sbjct: 534 SFRVTDYPPKTDDDGQVVQCPGVWWGHHPDELPQ------NEPLDLVVELDFNTY--DRQ 585

Query: 582 CQLRVLDASPVEGH 595
            ++R++D    +  
Sbjct: 586 YEVRLIDFRLHQPQ 599


>gi|307153010|ref|YP_003888394.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7822]
 gi|306983238|gb|ADN15119.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7822]
          Length = 781

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 155/618 (25%), Positives = 278/618 (44%), Gaps = 57/618 (9%)

Query: 17  RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMP 70
           +W  L   E       I + +      +  + A++L  R ++       FL+P       
Sbjct: 6   QWQILTPVEIPRWFQEIVKGYTRNSDGL--MAAQLLWQRGITDPLQLPGFLDPDAYQ-PS 62

Query: 71  DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126
            P     +   A +R+ QA+ + EK+ I+GD+D DG  + +++   L       +  + Y
Sbjct: 63  SPFAFGQEMKWAVQRLQQALSSGEKLTIWGDFDADGITATSVLWEGLGEFFPQYLQLDYY 122

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP+R  + +G N S +++   +G +LIIT D GST+   ++YA   GID+I+ DHH +  
Sbjct: 123 IPNRFSESHGLNCSGIDRLARQGTRLIITCDTGSTNLTEIEYANQLGIDIIISDHHTLPQ 182

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +  P  A++NP   D      HL    V + ++  +Y+ L    K PL   L    DLVA
Sbjct: 183 DRPPVIAIINPRYFDSSHPLFHLSGVAVAYKLVEALYQTLPDLPKNPLLNLL----DLVA 238

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMIG 302
           +  + D+V L+G  R    +G+   ++Q      PG+  L+E    S      ++ + +G
Sbjct: 239 IGLIADLVQLVGDCRYLAQRGIQKLQQQLKNPTRPGIARLLELCQRSGD-RPTDISFGLG 297

Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           P INA  R  G++     LL S DSQ  + LA++ ++ N  R+ ++  +  Q + K+   
Sbjct: 298 PRINAVSRIQGDATFCVELLTSKDSQRCQKLALETELANTRRKALQKEITAQVQKKLSQL 357

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----------KGIG 411
             D+    VIV+E  +W  G++GL+A ++  ++ RP+  ++  ++              G
Sbjct: 358 --DLSTTHVIVLEDPQWQSGVLGLVAGQIATEYNRPTILLTPGDEENADNAASLAKIARG 415

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S RS+   D+ ++V  A +  +L + GGH +AAGL++   N     D   +        L
Sbjct: 416 SARSVNHIDLYQLV--ASQSHLLHRFGGHPLAAGLSLPVENISLFRDGINQQLRQQHGDL 473

Query: 472 ITT-PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVV 524
               PV + D V++ + +  AL   L+   PYG GNP P     +   ++        + 
Sbjct: 474 ALRGPVIEADLVVSVAELGKALFWELKLLEPYGMGNPIPKLLIQDCWFENAWHNNPKDLR 533

Query: 525 NLA--HLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
                +++ TF+ +D+        + +  Y   L +               L  N +   
Sbjct: 534 GKKIQYIKTTFQLRDNSVNEGFPGVWWGHYKDELPQNTSS------DALVELDYNLY--E 585

Query: 580 KRCQLRVLDASPVEGHHF 597
           KR ++R+L   P    H+
Sbjct: 586 KRYEVRLLAVRPHTPDHY 603


>gi|328676637|gb|AEB27507.1| Single-stranded-DNA-specific exonuclease recJ [Francisella cf.
           novicida Fx1]
          Length = 580

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 137/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 NKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV----EEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAIKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P+ + D  L      +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELEEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDCIKACYELQKEEFLGQVNLSLNIKTIE 579


>gi|256028613|ref|ZP_05442447.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D11]
          Length = 554

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  R   S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 1   MVKERSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 59

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   + A+ YIP R    YG +   ++ F  +  +
Sbjct: 60  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 119

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
            +ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 120 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 179

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 180 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 234

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 235 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 294

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+        + SVI +   +WHPG++G++++RL
Sbjct: 295 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 354

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 355 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 411

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++F      +               D  L    +     + +E  GP+G+ NP
Sbjct: 412 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 471

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D+ +  A+ F +      +++     K  +
Sbjct: 472 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 527

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 528 IVYYPEKIILNDEEVTQIILKSIK 551


>gi|289766531|ref|ZP_06525909.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D11]
 gi|289718086|gb|EFD82098.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           D11]
          Length = 557

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  R   S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 4   MVKERSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 62

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   + A+ YIP R    YG +   ++ F  +  +
Sbjct: 63  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 122

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
            +ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 123 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 182

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 183 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 237

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 238 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 297

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+        + SVI +   +WHPG++G++++RL
Sbjct: 298 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 357

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 358 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 414

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++F      +               D  L    +     + +E  GP+G+ NP
Sbjct: 415 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 474

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D+ +  A+ F +      +++     K  +
Sbjct: 475 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 530

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 531 IVYYPEKIILNDEEVTQIILKSIK 554


>gi|163791330|ref|ZP_02185743.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp.
           AT7]
 gi|159873409|gb|EDP67500.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp.
           AT7]
          Length = 699

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 238/501 (47%), Gaps = 27/501 (5%)

Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           G  S A++   +       N YIP+R  DGYGPN +  E+ I +G QLI+T D G + + 
Sbjct: 17  GVTSTAVLKETIEMIGGEVNYYIPNRFTDGYGPNTAAFERLIEQGTQLILTCDNGVSGHT 76

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
           A+  A + GIDVI+ DHH++      AYA+++P         G L   GV F +   +  
Sbjct: 77  AIDRAKSLGIDVIITDHHELPDTLPDAYAVIHPRHPKGSYPFGELAGVGVAFKLATALLG 136

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
            +              LLDLVAL T+ D+V L   NRA V +GL+V +     GL AL +
Sbjct: 137 EIPI-----------ELLDLVALGTIADLVLLTNENRALVKQGLLVLKNTQRMGLTALFK 185

Query: 285 RVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
              I    I  E +G++I P +NA GR+G++     LL + D +    LA  +   N  R
Sbjct: 186 SAKIKREEIDEETIGFIIAPRLNAVGRLGDAAPAVELLTTFDDETALALAQLVQEKNTER 245

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           +   S +  +A   +         + V V+  + WH G++G++A+++  K G+P+  ++ 
Sbjct: 246 QAYVSTITNEAFEMIEKLPTA---SDVYVLAKEGWHEGVLGIVASKIVGKTGKPTLVMTI 302

Query: 404 EE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
           +   G   GSGRSI  F +   +    +       GGH MAAGLTV   N   + D    
Sbjct: 303 DNAKGLAKGSGRSIAAFHLYNALDSVRQLTT--TFGGHHMAAGLTVPIENIALIQDNLNH 360

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
           +A     +       ++DG L      + +++ L    P+G  N  P+F F N + Q +R
Sbjct: 361 YAAETGLSEELGEEIQVDGQLKIQEATVEVVEELNRLAPFGTDNLKPLFLFKNVESQDVR 420

Query: 523 VVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
            +     HL+M    +D+  L  I F  +G+   E  + S    + V G L +N W GS+
Sbjct: 421 RIGGDQAHLKMKLV-EDNAFLDVIGF-QFGSVADEIGLYSD---VSVVGKLAINEWNGSR 475

Query: 581 RCQLRVLDASPVEG-HHFAKK 600
           + QL + D + +EG   F  +
Sbjct: 476 KTQLMLEDLA-IEGVQVFDSR 495


>gi|260495119|ref|ZP_05815248.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_33]
 gi|260197562|gb|EEW95080.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_33]
          Length = 556

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  R   S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 3   MVKEKSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 61

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   + A+ YIP R    YG +   ++ F  +  +
Sbjct: 62  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 121

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
            +ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 122 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 181

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 182 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 237 KSTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+        + SVI +   +WHPG++G++++RL
Sbjct: 297 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 356

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 357 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++F      +               D  L    +     + +E  GP+G+ NP
Sbjct: 414 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 473

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D+ +  A+ F +      +++     K  +
Sbjct: 474 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 529

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553


>gi|154173842|ref|YP_001409209.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter curvus
           525.92]
 gi|112803465|gb|EAU00809.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter curvus
           525.92]
          Length = 525

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 147/548 (26%), Positives = 258/548 (47%), Gaps = 35/548 (6%)

Query: 52  VSIDYAKDFLNPSIRLLM-------PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
           +S +  ++ L       +       P P  L D  K A RI +A+   E I+I GDYDVD
Sbjct: 2   LSKEDIRNLLELRFSNDIHKKLSQIPTPSALKDIFKGAMRIKEAMQKDELIVIVGDYDVD 61

Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           G  S  ++  F     V N  + IP+R  DGYG NP ++E+ ++E  +LIITVD G ++ 
Sbjct: 62  GVVSSVILAEFFDDLGVGNYQVRIPNRFKDGYGLNPDIIEE-LDENVKLIITVDNGISAN 120

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           DA Q    +GID+I+ DHH        AYA++NP +         +C A V + +   + 
Sbjct: 121 DAAQICKARGIDLIITDHHMPPPVMPEAYAIINPKQPGCTFPNIEICGAEVAWYLAGALK 180

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
            + + +N     +D+   L+L+A+A + D++ L  +NR  V  GL           +A+ 
Sbjct: 181 DVCKLNN-----YDMSKFLELLAIAIIADMMELRDMNRMLVRLGLNRLNSSKRAAFRAIK 235

Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
           E          +++ ++I P IN+ GR+ ++      L +    +       +   N +R
Sbjct: 236 EFYGKDK-FECDDISFLIAPLINSAGRMDDAMNSFDFLRAKTIDKAYDYLDMIIDFNNSR 294

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           +  E A+ E +   V           +IV  G++WH G++G++A+RL + F +P+   S 
Sbjct: 295 KEEERALFECSLKDVR------DDDEIIVTWGEQWHEGVIGIVASRLAKHFSKPAIVFS- 347

Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
            + G+  GS RSI   DI  ++  A  E +L   GGH  AAGL +   N  +  +   K 
Sbjct: 348 IDRGRAKGSARSIGKLDILALI--AKHEDLLNSYGGHKGAAGLVIAPENLQKFKEEINKS 405

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
              ++         ++ G ++A  ++  L+++LE   PYG  NP P+F      +++ ++
Sbjct: 406 CF-LMDLHQFASSDELLGDISAKEIDFELLEILELYEPYGQKNPRPIFRIDGAVVKNEKL 464

Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           +     HL++  +  D +TL+A+ F               G+ +++   +  N +RG   
Sbjct: 465 IGRDQNHLKLILQKDD-KTLEALFFNFTRH-------VKVGESINIIFSISKNSFRGLVT 516

Query: 582 CQLRVLDA 589
            QL + + 
Sbjct: 517 PQLLIREV 524


>gi|208778961|ref|ZP_03246307.1| single-stranded-DNA-specific exonuclease RecJ [Francisella novicida
           FTG]
 gi|208744761|gb|EDZ91059.1| single-stranded-DNA-specific exonuclease RecJ [Francisella novicida
           FTG]
          Length = 580

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 137/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIKPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NP +         +
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+ 
Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV----EEGILVKGGGHAM 442
           A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAIKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+++ +F +    F+    +I+        P+ + D  L      +  +D +++  
Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELEEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L+
Sbjct: 491 PFGREFQKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 550 I--GDYIKACYELQKEEFLGQINLSLNIKTIE 579


>gi|325914664|ref|ZP_08177005.1| single-stranded DNA-specific exonuclease [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539166|gb|EGD10821.1| single-stranded DNA-specific exonuclease [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 642

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 164/593 (27%), Positives = 261/593 (44%), Gaps = 33/593 (5%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSIDY----AKDFLNPSIRLLMPDPLILTDCDKAA 82
               L   ++     + ARV+  R +  +      +  + P I  L      L D D A 
Sbjct: 51  DALILRSAERDGFTPLQARVIAGR-MKAEDSGLSVRQRVLPRIADL-DSYHQLPDIDIAV 108

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVAL----MMRFLSHCSVNANMYIPDRIVDGYGPN 138
            RI  AI   E I    D+D DG+ + A+    ++ +      +  ++   R+ +GYG +
Sbjct: 109 DRICTAIQGREVIACVVDHDADGSTAGAVMLASLVDYFGMAQQDVLLFNSHRMKEGYGVS 168

Query: 139 PSLMEKFINEGA--QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YAL 194
            +++++ +       LIIT D GS  +D +     +GID +V DHH++ +  IP    A+
Sbjct: 169 NAVVDRILQHHPLPSLIITGDQGSADHDRITRMREEGIDTVVTDHHEIPARGIPQDAVAV 228

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDV 253
           VNP R D      ++    V +LV+  +   L     +P +   L  LLD VAL + CD 
Sbjct: 229 VNPARADSSFADKNVAGCHVAWLVMCAVRAELINRGHLPADAPRLGDLLDWVALGSACDA 288

Query: 254 VPLIG--LNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           V L     NRA +  GL V   +  P  + +   +      +A +L + IGP +NA  R+
Sbjct: 289 VSLSKSINNRALIAHGLKVMNARRRPAWEGMAVVLGKKDAYSAPDLAWKIGPRLNARSRL 348

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
            E+  G + L+S D  E   LA  L+  N  RR +E  M   A A    Q      +  I
Sbjct: 349 SEAMTGVQFLMSKDYDEAVRLATVLEEDNTTRRGIEKEMTATAMAIAALQASS--DSPAI 406

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE--EDGKGIGSGRSIEGFDIGKMVSFA- 428
           VV  +  H G  G+ A+RL E  GRP+  +S +  E G   GS R+  G +I + +    
Sbjct: 407 VVCLENGHAGCHGITASRLTEALGRPTMMLSPKEGEMGVFTGSLRTAAGVNIKQAMDQVV 466

Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             E G+L+  GGH  A GL V+  N   L + F +     V      P+   DG L+AS 
Sbjct: 467 EWEPGLLLSHGGHHGAGGLRVQAGNIHLLQELFCEAVLLQVHPSQLHPLIHTDGELDAS- 525

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545
            ++A++D L    PYG     PVF     ++ S RV+     H++++ + +      AI 
Sbjct: 526 PSLAMVDELAQLEPYGREFDPPVFHGQ-FQVLSARVIGADKTHIKLSLKDRYGGVTSAIW 584

Query: 546 FRVYGT------PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           F    T      P    +  + G  ++    L  N +RG+    L++  A   
Sbjct: 585 FGAIKTSVFRPEPSEADVPVAAGDMVNAAYTLTSNTYRGNTSVDLQIKHARKA 637


>gi|297566940|ref|YP_003685912.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus silvanus
           DSM 9946]
 gi|296851389|gb|ADH64404.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus silvanus
           DSM 9946]
          Length = 723

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 151/578 (26%), Positives = 247/578 (42%), Gaps = 51/578 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W              +     IP + A VL NR         F +P++     + L +  
Sbjct: 3   WRFRPW-PSRASLEPLMSTLGIPPLAAAVLFNRG--------FRDPALLDPPLELLPIRG 53

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            ++AA R+V+A+   E+I I GDYD DG    A+++  L+      + ++P R+ +GYG 
Sbjct: 54  LEEAAWRVVRALEQGERIRIHGDYDADGLTGTAILLGGLARLGAKVHAFVPHRLHEGYGV 113

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
               + + +     L ITVDCG +++  L+     GI V+V DHH       P    V+P
Sbjct: 114 LMERIPEHLE-ACDLFITVDCGISNHAELKSLVEHGIGVLVTDHHSPGETPPPGLV-VHP 171

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
               +L+G  H   AGV +L+L  +  +L     V          DL A+ T+ DV PL+
Sbjct: 172 ALTPELNGLPHPTGAGVAYLLLWKVRELLGLGAPV-------EFADLAAIGTIADVAPLL 224

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G NRA V +GL   R+  + GL+ L  +           + + I P INA  R+G++ L 
Sbjct: 225 GFNRALVKEGLRQLRQSAHLGLRELASQHCKDYTAVE--VAFRIAPRINAASRLGQAELA 282

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             LL +D+      LA  L+ LN  R+ +E  ML +    +         A   VV    
Sbjct: 283 LELLTTDNLLAARQLAEDLNTLNARRQRIEEEMLNRVLPTL------DHAAPAYVVHDPE 336

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
            + G++G++A+R+ E+F +P F I+     +G GS RS  G  I  + +       L + 
Sbjct: 337 GNAGVMGIVASRILERFYKPVFIIA-----EGKGSVRSTPG--ISAVGALRASAEFLKRL 389

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHA AAG  +   N     +   ++               +DG L        L + L+
Sbjct: 390 GGHAQAAGFAIAEENIPAFREAVYRYVAEHPAP---VAEVYLDGSLTGEDFT-ELYEALQ 445

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
              P G  NP P+F     K + +  +    HL+   +      ++ + ++  G  L + 
Sbjct: 446 FLEPLGQENPEPLFYLRG-KPEKVATMGEGRHLRFYLDG-----IKVVRWKDSGENLPQA 499

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                   + +   L +N W+G +  +LR L     E 
Sbjct: 500 -------EVELAASLTLNEWQGERALELRALAYRAPEP 530


>gi|222097961|ref|YP_002532018.1| single-stranded-DNA-specific exonuclease recj [Bacillus cereus Q1]
 gi|221242019|gb|ACM14729.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus Q1]
          Length = 553

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 247/586 (42%), Gaps = 45/586 (7%)

Query: 18  WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           W  L             L + +   I  ++   L    + + +    FL P       +P
Sbjct: 3   WKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFH-NP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  +A  RI++AI   E I IFGDYD DG  S  ++ + L     +    +P R  
Sbjct: 62  FLLNDMKRAVDRILKAIQQKESIYIFGDYDCDGITSSTILKQALEKIGAHVMARLPLR-E 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +P  ++  + E   L+ITVD GS+++ A++ A  +GIDVIV DHH+V  E     
Sbjct: 121 EGYGLSPYAVD-SLPENVSLLITVDNGSSAHPAIKRAKEKGIDVIVTDHHEVLGEHPNCL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A VNP R D+     HLC AGV   ++  ++  L+QD          + ++   + T+ D
Sbjct: 180 AFVNPKRKDNTYPYQHLCGAGVALKLIQALFITLKQDWVKETW----NYIEYATIGTIAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           V+PL G NR     GL   R   NP LK   E++ ++  + +  +G+ IGP +N+ GRI 
Sbjct: 236 VMPLTGENRIICWYGLYKMRNCPNPLLKLFREQLQLN-YVDSTTIGFFIGPMLNSCGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + NLG  LL   +          L  LN  R+ + +     A   +  Q  +      ++
Sbjct: 295 DPNLGGALLQKVEPTT--DDIQLLINLNNKRKQLTNEQFRIASKIIQQQSLE---RDSLL 349

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H GI G+LA+++   + +P+  ++ +  G    S RS  G     + +      
Sbjct: 350 VVQGDFHKGITGILASKISSHYKKPTIVLTQDGVG----SARSGNGSKFSIIQAIQSGGE 405

Query: 433 ILVKGGGHAMAAGLTVER--VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +L K GGH  AAGL+++    N     +  Q+            P+              
Sbjct: 406 LLKKYGGHEAAAGLSIDPTEQNVQLFREQMQEAVKQQ---TDPKPISYFISEFPIYNFPN 462

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L D L +  P+G G+P P+F   N              H+++ F  +          R 
Sbjct: 463 HLFDDLMALEPFGNGHPKPIFRSQNIFACGHSCFGKNKEHVELFFSKK----------RA 512

Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           +    G      +R  RM V      + +   ++    + D   V+
Sbjct: 513 HAYSHGHLFQNWNRYNRMDVLYTP--HSY---EKLDFLINDIRLVQ 553


>gi|254412677|ref|ZP_05026450.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180412|gb|EDX75403.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus
           chthonoplastes PCC 7420]
          Length = 809

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 145/606 (23%), Positives = 264/606 (43%), Gaps = 54/606 (8%)

Query: 17  RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           +W      +     L   + +   +     A++L  R +   +    F+NP +      P
Sbjct: 5   QWHVQPSPDVPQWFLDAVKSYAPASEGYYAAQLLWQRGIRELNQLAGFINPDLYQ-PASP 63

Query: 73  LIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIP 128
                +  +A +R+ QA    +K+ I+GD+D DG  + +++   L      + +   YIP
Sbjct: 64  FEFGQEMKRAVQRLQQARDKGKKVAIWGDFDADGITATSVLWDGLGQFLPQNQHLTYYIP 123

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R+ + +G N   +++    G QLI+T D GST+   + YA   GID+I+ DHH +  E 
Sbjct: 124 NRLTESHGLNCPGIDQLAESGTQLIVTCDTGSTNLSEIDYADQLGIDIIITDHHTLPEER 183

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
               +++NP    +     HL    V + ++  +Y+ L    + P    L  LLDLVA+ 
Sbjct: 184 PNVVSIINPRYFAETHPLFHLSGVAVAYKLVEALYQTLPDIPQQP----LEDLLDLVAIG 239

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR----QGNPGLKALIERVNISSPITAENLGYMIGPS 304
            + D+V L G  R    +G+   ++    +  PG+  L+E    S      ++ + +GP 
Sbjct: 240 LIADLVQLSGDCRYLAQRGIQTLQQQLKTRTRPGVAKLLELCQRSGD-RPTDISFGLGPR 298

Query: 305 INAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
           INA  R  G+++    LL   D    + LA++ ++ N  R+ ++  + EQ + K+     
Sbjct: 299 INAVSRIQGDASFCVELLTRRDETYTQTLALETELANSRRKSLQKDITEQVKRKLAQL-- 356

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-----------KGIGS 412
           D+    VIV++  +W  G++GL+A ++ +++GRP+  +S  E+               GS
Sbjct: 357 DLSTTCVIVLDDPQWSAGVLGLVAGQIAQEYGRPTVLLSTGEEWGGEGSTLNTSPIARGS 416

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
            RS+ G D+ ++V    +E +L + GGH  AAGL++   N     +   +     + A  
Sbjct: 417 ARSVNGIDLYELVQS--QEHLLHRFGGHPFAAGLSLPVENIPLFSEGINQKLRQQLAAQD 474

Query: 473 --TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS------IRVV 524
               PV   D V+  +A+   L   L+   P G GNP P     N   +S        + 
Sbjct: 475 ALLAPVVTADIVVTVAALGKPLFQELKLLEPCGMGNPVPKLLIENCWFESVWNRNTQDLK 534

Query: 525 NLA--HLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
                +++   E  D  T      I +       G +  +    R +    L  N ++  
Sbjct: 535 GKKVQYIKTELEIWDDSTSVGFPGIWW-------GHYRDEVPKGRCNAIVELDYNNFKKR 587

Query: 580 KRCQLR 585
              +L 
Sbjct: 588 PEVRLV 593


>gi|237743258|ref|ZP_04573739.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           7_1]
 gi|229433037|gb|EEO43249.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           7_1]
          Length = 557

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 141/564 (25%), Positives = 255/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  R   S +  + F+NP       +P    + +    +I+    N
Sbjct: 4   MVKEKSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISVREN 62

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   + A+ YIP R    YG +   ++ F  +  +
Sbjct: 63  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 122

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
            +ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 123 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 182

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 183 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 237

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 238 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 297

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+        + SVI +   +WHPG++G++++RL
Sbjct: 298 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 357

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 358 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 414

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++F      +               D  L    +     + +E  GP+G+ NP
Sbjct: 415 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 474

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D+ +  A+ F +      +++     K  +
Sbjct: 475 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 530

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 531 IVYYPEKIILNDEEVTQIILKSIK 554


>gi|237742960|ref|ZP_04573441.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           4_1_13]
 gi|229430608|gb|EEO40820.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp.
           4_1_13]
          Length = 557

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 137/564 (24%), Positives = 255/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  RN  S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 4   MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 62

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   +  + YIP R    YG +   ++ F     +
Sbjct: 63  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRHGK 122

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI++IV DHH+   E+     L    +L       +L  
Sbjct: 123 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 182

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP++  NR  + KGL + 
Sbjct: 183 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKII 237

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 238 KNTEVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 297

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + +    K+      + + SVI +   +WHPG++G++++RL
Sbjct: 298 NIIEEMKEQNKQRRTLEKHIFDDVMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 357

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 358 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 414

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++       +               D  L    +     + +E  GP+G+ NP
Sbjct: 415 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 474

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   + KL  ++   +          +D+ +  A+ F +      +++     K  +
Sbjct: 475 HPLFFDRDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYM----NKTYN 530

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 531 IVYYPEKIILNDEEVTQIILKSIK 554


>gi|256846932|ref|ZP_05552386.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_36A2]
 gi|256717730|gb|EEU31289.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_36A2]
          Length = 556

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 256/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  RN  S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 3   MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 61

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   +  + YIP R    YG +   ++ F     +
Sbjct: 62  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRQGK 121

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI++IV DHH+   E+     L    +L       +L  
Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 181

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP++  NR  + KGL + 
Sbjct: 182 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKII 236

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 237 KNTEVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+      + + SVI +   +WHPG++G++++RL
Sbjct: 297 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 356

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 357 AIKFNIPVILVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++       +               D  L    +     + +E  GP+G+ NP
Sbjct: 414 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 473

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   + KL  ++   +          +D+ +  A+ F +      +++     K  +
Sbjct: 474 HPLFFDRDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYM----NKTYN 529

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553


>gi|19705314|ref|NP_602809.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713285|gb|AAL94108.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 556

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 146/564 (25%), Positives = 255/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  ++V  +L  R+  S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 3   MVKEKSTDELVKELLEKRDHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 61

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   ++A+ YIP R    YG +   ++ F     +
Sbjct: 62  KEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYIPSRKETDYGVSKKSIDYFHKRHGK 121

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 122 LVITVDTGYNTIEDVRYAKDLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKNYKFQYLSG 181

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 182 AGVAFKLAQGICMSLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 237 KNTKIKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+      + + SVI +   +WHPG++G++++RL
Sbjct: 297 NIIEEMKEQNKQRRALEKNIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 356

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +     L + GGH +AAG  + +
Sbjct: 357 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVRNFLERYGGHDLAAGFVIHK 413

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++F K    +      +        D  L    +     + +E  GP+G+ NP
Sbjct: 414 ENINKVKEYFIKAIPKMKLEHNKSKKDYEKNFDFELPLEDLGDKTFEFMEKMGPFGSNNP 473

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D     A+ F +      E       K  +
Sbjct: 474 HPLFFDRNLKLDDIKKFGVDFRHFNGIIYKDKVNYNAVGFELAE----EISPDYMNKTYN 529

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553


>gi|294784273|ref|ZP_06749568.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_27]
 gi|294488139|gb|EFG35490.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp.
           3_1_27]
          Length = 556

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 256/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  RN  S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 3   MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 61

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   +  + YIP R    YG +   ++ F     +
Sbjct: 62  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRHGK 121

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI++IV DHH+   E+     L    +L       +L  
Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 181

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP++  NR  + KGL + 
Sbjct: 182 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKII 236

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 237 KNTEVKGLSYLLNYLRLNKKILTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+      + + SVI +   +WHPG++G++++RL
Sbjct: 297 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 356

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 357 AIKFNIPVILVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++       +               D  L    +     + +E  GP+G+ NP
Sbjct: 414 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 473

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   + KL  ++   +          +D+ +  A+ F +      +++     K  +
Sbjct: 474 HPLFFDRDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYM----NKTYN 529

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553


>gi|315930485|gb|EFV09537.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 493

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 140/503 (27%), Positives = 255/503 (50%), Gaps = 30/503 (5%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +A+  +EK+ I GDYD
Sbjct: 9   IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
            +A +    + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +
Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
             + +        +D+   L+L+A+A V D++ L  LNRA V +G+    +      +A+
Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            +          +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++
Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+  E  + E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S
Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E+    GS RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K
Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
               I  +       +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +
Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461

Query: 523 VVNL--AHLQMTFESQDSETLQA 543
           ++     HL++   +++++T++A
Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEA 483


>gi|254302274|ref|ZP_04969632.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322466|gb|EDK87716.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 556

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 144/564 (25%), Positives = 259/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  R+  S +  + F+NP    L  +P    + +    +I+ A  N
Sbjct: 3   MVKEKSTNELIKELLEKRDHESKNQIEKFINPDYSDL-KNPFDFENMEAIVNKIISAREN 61

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
           +EKI I+GDYDVDG +  A + +F +   ++A+ YIP R    YG +   ++ F     +
Sbjct: 62  NEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYIPSRKETDYGVSKKSIDYFHKRHGK 121

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKSYKFQYLSG 181

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   +   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 182 AGVAFKLAQGVCMKLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 237 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E ++ + A  K+      +++ SVI +   +WHPG++G++++RL
Sbjct: 297 NIIEEMKEQNKQRRALEKSIFDDAMRKIKNLKIPLEKLSVIFLSSPKWHPGVIGVVSSRL 356

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 357 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++F      +               D  L    +     + +E  GP+G+ NP
Sbjct: 414 ENISKVKEYFINTIPKMKLEYNKNKKDYEKDFDFELPIEELGDKAFEFMEKMGPFGSNNP 473

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D     A+ F +      E       K  +
Sbjct: 474 HPLFFDRNLKLDDIKKFGVDFRHFNGIIYKDKVNYNAVGFELAE----EISSDYMNKTYN 529

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553


>gi|160913539|ref|ZP_02076230.1| hypothetical protein EUBDOL_00015 [Eubacterium dolichum DSM 3991]
 gi|158434091|gb|EDP12380.1| hypothetical protein EUBDOL_00015 [Eubacterium dolichum DSM 3991]
          Length = 553

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 135/569 (23%), Positives = 250/569 (43%), Gaps = 46/569 (8%)

Query: 26  GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
              R L I Q   +P + A+VL ++ +  +  K+ L      ++ DP       +AA RI
Sbjct: 7   DSKRQLDIQQNFHLPYLAAKVLASKQLCDEEIKELLA---SPILSDPFQAKGIQEAADRI 63

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             A    EK+++ GDYD DG  + A+M+  L    VNA  YIP+R  +GYG     +E  
Sbjct: 64  YLAKQQKEKVLVCGDYDADGICATAIMVDALQRYGVNAGFYIPNRFKEGYGLQVHTVEMA 123

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
             +G  L+ITVD G  ++DAL+ A    +DVIV DHH ++ +  P + L++P  + +   
Sbjct: 124 KQKGYSLLITVDNGVKAFDALKKAKELELDVIVSDHHAMEEDF-PCFCLLHPQLMGEQFS 182

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
                   +       + R L  D        +   +    +A + DV+ +    RA + 
Sbjct: 183 TLSGAGVALT------LARALIGD--------VEEHIVYACVAAIADVMTVKKETRAIIK 228

Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLI 322
            GL   R+     ++ L          T   + + I P +NA GR+ +   +N   R L+
Sbjct: 229 LGLQYLRKGAALPIQMLANDRYPRWNETL--IAFQIVPKLNATGRLADLANANNTVRYLL 286

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
             + +++  +A ++  LN  R+ M   M+E A + V  +          ++  + +H G+
Sbjct: 287 LHNREDISRMAKQICDLNDKRKAMSDEMVETARSLVHDEY------DFQLLFHESFHEGM 340

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAM 442
           VG++A +L+E+  +P    +  +     GS RS +  D+        +   L   GGH  
Sbjct: 341 VGIVAGKLQEELQKPVMVATLRDH-TFKGSIRSGKLLDLTDFFQGCKQ--DLTAYGGHVA 397

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGP 501
           AAG+              Q + +N +  +        + V L++  +++  ++ L    P
Sbjct: 398 AAGIGFPFEKK----QNIQDYVNNRMKDIQLQKEIVYEAVALDSKEISMQEVEGLSMLAP 453

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560
           +G G   P+F   N  +   +++    H +   ++     ++A+ F      + E L  S
Sbjct: 454 FGNGFEEPLFFLQNQDILEEKLLKKGIHRKWLLKND----VEAMYFNCQD--MKECL--S 505

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            G ++ + G+L +N +   +   L V++A
Sbjct: 506 EGAQLSLLGNLRINTFLKKRNVSLFVVEA 534


>gi|163781645|ref|ZP_02176645.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882865|gb|EDP76369.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 547

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 158/573 (27%), Positives = 262/573 (45%), Gaps = 47/573 (8%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
             ISG  W  L           +   +    ++A+++VNR    D  ++     ++ L+P
Sbjct: 2   KGISGKEWQVLSHSIEPP--PELVDIYG--RLLAQLIVNRGY-EDSHEELFELKLKYLLP 56

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
              +L + ++   RIV+++   E+I+IFGDYDVDG    A++   L          +P+R
Sbjct: 57  Y-NLLPNVEEGIERIVESVRRGERIIIFGDYDVDGITGTAILYEVLRAAGSKVTPVLPNR 115

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
              GYG N  L+E   +  A+L+ITVD G+++   +  +   G+DV+VIDHH V  E   
Sbjct: 116 GT-GYGLNRRLIE-VFSRYAELLITVDNGTSAVSEIDNS---GMDVVVIDHHNVPEEVPR 170

Query: 191 AYALVNPN-RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
              L+NP            L ++ + F +  ++ R L  D       D+ +LLDL A+ T
Sbjct: 171 RAVLINPKLSNGVPKDMKELSSSAMCFYMAAVLVRRLGLD------MDVRTLLDLAAMGT 224

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGN-----PGLKALIERVNISSPITAENLGYMIGPS 304
           V DV+P+   NR  V KGL +     +     PG++AL+    +   I+A+++ Y I P 
Sbjct: 225 VGDVMPMNRTNRILVSKGLSLLEGIASGAVDKPGVRALLRVARVGERISAKDIAYSIAPR 284

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           INA GR+    L   LL   D +  E+LA K++ LN  RR +   +  +A  KV+    +
Sbjct: 285 INAPGRVSNPKLSLELLTEKDPKRAELLARKIESLNIKRRAITDNVYREAYRKVM----E 340

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
               + I V  + WH G++G++A RL  + G+P    S       +GS RS+EG D+   
Sbjct: 341 SSSRNFISVWSEGWHVGVLGIVAGRLSSQMGKPVAVFS-RGANHSVGSVRSVEGIDVY-- 397

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
              +    + +K GGH  AAGLT+E        +   +   ++   L   P   ID  L 
Sbjct: 398 EGLSKLSHMFLKWGGHMQAAGLTLESRLLEAFSEEVDELFSHVPKEL---PPLYIDMELP 454

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            S V   ++  +    P+G  NP PVF     +++ +++      ++    +     +A+
Sbjct: 455 LSGVTPDVLRSVSRLEPFGEKNPVPVFLSEEVEVKGVQLRGSR-AKLKLGDR-----EAV 508

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHL---CVN 574
            +         F     G R  V   L    +N
Sbjct: 509 CW-----EPLLFKSLKTGNRFRVAYSLVDGDIN 536


>gi|296328562|ref|ZP_06871081.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154371|gb|EFG95170.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 554

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 145/564 (25%), Positives = 254/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  ++V  +L  R+  S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 1   MVKEKSTDELVKELLEKRDHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 59

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   ++A+ YIP R    YG +   ++ F     +
Sbjct: 60  KEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYIPSRKETDYGVSKKSIDYFHKRHGK 119

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI+VIV DHH+   E+     L    +L       +L  
Sbjct: 120 LVITVDTGYNTIEDVRYAKDLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKNYKFQYLSG 179

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 180 AGVAFKLAQGICMSLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 234

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 235 KNTKIKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 294

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+      + + S+I +   +WHPG++G++++RL
Sbjct: 295 NIIEEMKEQNKQRRALEKNIFDDAMRKIKNLKIPLDKLSIIFLSSPKWHPGVIGVVSSRL 354

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +     L + GGH +AAG  + +
Sbjct: 355 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVRNFLERYGGHDLAAGFVIHK 411

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++  +F K    +      +        D  L    +     + +E  GP+G+ NP
Sbjct: 412 ENINKVKKYFIKAIPKMKLEHNKSKKDYEKNFDFELPLEDLGDKTFEFMEKMGPFGSNNP 471

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +D     A+ F +      E       K  +
Sbjct: 472 HPLFFDRNLKLDDIKKFGVDFRHFNGIIYKDKVNYNAVGFELAE----EISPDYMNKTYN 527

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 528 IVYYPEKIILNDEEVTQIILKSIK 551


>gi|328675693|gb|AEB28368.1| Single-stranded-DNA-specific exonuclease recJ [Francisella cf.
           novicida 3523]
          Length = 581

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 144/572 (25%), Positives = 246/572 (43%), Gaps = 30/572 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   ID  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVREIDSIELILNGSIKDL-SSPFLFKDIEKALERLYQALQNNEVIGL 78

Query: 98  FGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L+            YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFNYPKQKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209
           LIIT D GST    +      GID IV DHH +  E  P    A++NPN+         +
Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIVTDHHAIPPEGAPKSAIAVLNPNQQGCNYPDKAI 198

Query: 210 CAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266
               V +L +  + R   Q+NK +   + L +LLD VA+ TV D V +     NR     
Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKAISQTYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D 
Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFNIAPILNSDGRVSDALGSVSFLLEEDE 313

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            ++E +   L   N  R+ ++  + ++A A+        QQ   + +  +  H GI G+ 
Sbjct: 314 HKIENIFDNLKQQNNQRKEIQKKLTQEAIAQAYHLN---QQKKSLCILLEDGHSGIHGIS 370

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442
           A+R+KE FG+P    S  +    + SG +    +I            E  +++K GGH  
Sbjct: 371 ASRIKEMFGKPVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIVVKEPQLIIKYGGHKG 430

Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIV--PALITTPVFKIDGVLNASAVNIALIDMLESAG 500
           AAGLT+ + NF +    F+    +IV    +I  P+ + D  L      +  +D +++  
Sbjct: 431 AAGLTIRKSNFDKFYQLFENEITDIVIKQNIILEPIIEYDFELEEHHFELETLDKIDALE 490

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           P+G     P+F      L+++R+V     H Q+    ++  +++AI F            
Sbjct: 491 PFGREFEKPLFCNE-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNN-KMLEQ 548

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G  +     L    + G     L +    
Sbjct: 549 LVIGDSIRACYELQKEEFLGQVNLSLNIKTIE 580


>gi|309775427|ref|ZP_07670430.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916816|gb|EFP62553.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 535

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 246/563 (43%), Gaps = 44/563 (7%)

Query: 28  NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87
            R+  I     +  + ARVL  + ++ +   + L    +  + DP       + A+RI Q
Sbjct: 9   ERSKQIQDTFQLTSLCARVLAAKELTDEQITELLK---KPQLADPFSAKGMQEVAQRIYQ 65

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147
           A  N E++M+ GDYD DG  S A+++  L    + A  YIP+R  +GYG     +++   
Sbjct: 66  AKQNKEQVMVCGDYDADGICSTAILVDALRRYGIQAGFYIPNRFAEGYGLQKHTVQQAHE 125

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
           +G +L+ITVD G  + DALQ A N+G+DVIV DHH +  E  P   L++P  + +     
Sbjct: 126 KGYRLLITVDNGVKALDALQEAKNRGVDVIVTDHHSMDEEF-PCLYLLHPVCMGEQFE-- 182

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
            L  AGV   +   +   +++             + L  +A + DV+PL    RA V  G
Sbjct: 183 TLSGAGVALELSRALLGEVKEH------------VVLACVAAIADVMPLRKETRAIVQLG 230

Query: 268 LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLISD 324
           L   R+     ++ L          T   + + I P +N  GR+ +   +N   R L+S 
Sbjct: 231 LQYLRQGVCQPIQLLANDRYPKWDETL--IAFQIVPKLNTTGRLADLANANNTVRYLLST 288

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384
             ++++ +A ++  LN  R+ M   M++ A   V  +          ++  D +H G+ G
Sbjct: 289 KLEQIQHMAKQIRELNDRRKTMSDDMVKVARTLVRPEY------RFQLLFHDSFHEGMAG 342

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444
           L+A +L E+   P    +  E     GS RS++  D+    +       L   GGH  AA
Sbjct: 343 LVAGKLSEELQLPVMVAAQREQ-MFKGSIRSLDLLDLTTFFNDLRP--SLYAYGGHRAAA 399

Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           G+     N   + D+      +I         +++   +     ++  ++ L    P+G 
Sbjct: 400 GIGFPYENKQIIQDYVNTRMEHI--RFQQESCYEV-IPIRVQEASLQEVESLSVLAPFGC 456

Query: 505 GNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
           G   P+F      ++S R++    H + T       + +A+ FR   T    +       
Sbjct: 457 GFEEPLFYLEEAAVKSCRLLGNGEHAKWTLND----SFEAMYFRCGST----YEHLHEKN 508

Query: 564 RMHVTGHLCVNYWRGSKRCQLRV 586
            ++  G+L +N + G K+  + V
Sbjct: 509 NVNFIGNLRINSFMGRKKVNIFV 531


>gi|34762750|ref|ZP_00143739.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887600|gb|EAA24680.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 556

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%)

Query: 33  ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           + ++ +  +++  +L  RN  S +  + F+NP       +P    + +    +I+ A  N
Sbjct: 3   MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 61

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
            EKI I+GDYDVDG +  A + +F +   +  + YIP R    YG +   ++ F     +
Sbjct: 62  KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRQGE 121

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           L+ITVD G  + + ++YA + GI++IV DHH+   E+     L    +L       +L  
Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 181

Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           AGV F +   I   L  D        +   LD+V + T+ DVVP+I  NR  + KGL + 
Sbjct: 182 AGVAFKLAQGICMKLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236

Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
           +     GL  L+  +      +T  ++ Y I P IN+ GR+G S +G+   + DD  +L 
Sbjct: 237 KNTEVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            +  ++   N+ RR +E  + + A  K+        + SVI +   +WHPG++G++++RL
Sbjct: 297 NIIEEMKDQNKQRRALEKHIFDDAMRKIKNLKISPDKLSVIFLSSPKWHPGVIGVVSSRL 356

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             KF  P   ++  E   G  S RS+   DI      +  + +L + GGH +AAG  + +
Sbjct: 357 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507
            N  ++ ++       +               D  L    +   + + +E  GP+G+ NP
Sbjct: 414 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKIFEFMEKMGPFGSNNP 473

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           +P+F   N KL  I+   +          +DS +  A+ F +      +++     K  +
Sbjct: 474 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDSVSYNAVGFELAEKIASDYM----NKTYN 529

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +         +  Q+ +    
Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553


>gi|198282776|ref|YP_002219097.1| phosphoesterase RecJ domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665215|ref|YP_002424972.1| single-stranded-DNA-specific exonuclease RecJ [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247297|gb|ACH82890.1| phosphoesterase RecJ domain protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517428|gb|ACK78014.1| single-stranded-DNA-specific exonuclease RecJ [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 605

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 171/589 (29%), Positives = 266/589 (45%), Gaps = 28/589 (4%)

Query: 25  EGINRALAITQKHAIPDIVARVLVNR--NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82
                 L    +     + AR++  R  +V +    + LN  +  L P P +L D D A+
Sbjct: 12  PVAAAILRAALELGYTPLQARIIAGRLSDVDLANLPELLNLQLSGLTP-PDLLPDIDIAS 70

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS-HCS---VNANMYIPDRIVDGYGPN 138
             IV AI     I++  D+D DGA++ A++      +        + YI  R+ DGYG  
Sbjct: 71  ECIVSAIKQGLPILLISDFDADGASAHAVLKFAFRDYFGVPEARIHSYIGHRLRDGYGVT 130

Query: 139 PSLMEKFI--NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY--AL 194
            +L ++ I       LIIT D GST ++ +    + G  VIV DHH V ++  P    A 
Sbjct: 131 ETLTDRIIAEAPRPALIITADQGSTDHERIARLRDHGFTVIVTDHHGVPADGPPTAAMAC 190

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDV 253
           VNP R D      ++    V +L+   + R L QD  +P +   L  LLDLVAL T+ D 
Sbjct: 191 VNPVREDSAFPDPYIAGVHVAWLLCCAVRRRLIQDGDLPASAPKLGGLLDLVALGTMADC 250

Query: 254 VPLIG--LNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310
           V L     N+A + +GL +       P  +AL    N   PITA  L +   P INA GR
Sbjct: 251 VDLARSTNNKAIIARGLAIMNSPVARPAWQALYVATNCKGPITAATLAFSFAPVINARGR 310

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
           +  +     LL+SD     E LA+     N  R+ ++S ML+++  +   Q  D   A+ 
Sbjct: 311 LDSALGSVDLLMSDSVPVAEGLALHFVEHNTERKAVQSNMLQRSAKQAAQQVRD--GAAA 368

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-GSGRSIEGFDIGKMVSFA- 428
           I +     H G+ G+ AARL E FGRP    S + +G+ I  S R++ GF +   ++   
Sbjct: 369 ITIFDPEGHAGVHGICAARLAESFGRPVAYFSPKAEGQHITASLRTVHGFHVRDALAEIA 428

Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                  V  GGHA A G+T++R    R  + +   A + +      P    DG L   A
Sbjct: 429 GRYPDDFVAWGGHAGAGGVTLKRDGLQRFAEAWAAIAASALRDQRAGPEIVTDGPLEV-A 487

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAF 546
            + A+++ L +  P+G     PVF     +++ +R V    HL++  +  D+    AI F
Sbjct: 488 PSFAVVEELAALEPFGRQWEPPVFRSHG-RIEQVRPVGDGRHLKLVVKM-DAMDYDAIWF 545

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEG 594
                 +        G+ + +   L VN +R +   QLR+   +   EG
Sbjct: 546 GAVENGV---CPVGVGQTVLMAYELDVNTFRDTTTLQLRIRHVALVSEG 591


>gi|254421355|ref|ZP_05035073.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Synechococcus sp. PCC 7335]
 gi|196188844|gb|EDX83808.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Synechococcus sp. PCC 7335]
          Length = 817

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 147/602 (24%), Positives = 266/602 (44%), Gaps = 52/602 (8%)

Query: 27  INRALAITQKHAIPDIV--ARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL-TDCDKAA 82
            +    + Q   +      AR+L  R + + +  + F  PS       P     +  KA 
Sbjct: 19  PDWIETVAQITGLTRPEKGARLLWARGIRTAEALRGFCWPS-AYTPASPFAFGEEMTKAV 77

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS---VNANMYIPDRIVDGYGPNP 139
            R++ A    EK+ I+GD+D DG  S A++   L            +IP+R+ + +G + 
Sbjct: 78  ARLMLARDRVEKVAIWGDFDADGITSTAVLWDGLKQFFDEPGQLTYFIPNRLKESHGLSI 137

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
             +++   +   LI+T D GST+ D + YA + G++VIV DHH + +      A+VNP  
Sbjct: 138 VGIDQLAAQDVTLIVTCDTGSTNPDEIDYAHSLGLEVIVSDHHTLPAVRPNVVAIVNPRA 197

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           L       +L    + + ++  +Y  L      P    L  L DLVA+  + D+V L G 
Sbjct: 198 LPSDHPMANLSGVAMAYKLVEALYERLPDVPTRP----LSELTDLVAIGLIADLVELTGD 253

Query: 260 NRAYVVKGLMVAR------RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IG 312
            R     G+   +          PG+  L++    +      ++ + IGP INA  R  G
Sbjct: 254 CRYLAQVGIEQLQTHLKSAYPIRPGVAQLLKLCRRAGD-RPTDISFGIGPRINAVSRIYG 312

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           E++    LL S DS   + LA K ++ N  R+ +++ +L+QA  ++  +  D+    VIV
Sbjct: 313 EASFCVELLTSQDSDRCQDLAEKTELANTRRKALQNDVLKQATHQL--ETRDLSTTGVIV 370

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE------EDGKGIGSGRSIEGFDIGKMVS 426
           +   +W  G++GL+AA++ +++GRP+  ++ +      +D    GS RS+   D+  +VS
Sbjct: 371 LCDPQWPVGVLGLVAAQVAQQYGRPTILLTQDTPADDGDDVLVRGSARSVNQIDLYDLVS 430

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486
              +  +L   GGH  AAGL++   +         +     + A +++PV ++D  +  +
Sbjct: 431 S--QAHLLTGFGGHPYAAGLSLPAKDLPMFQAAINQQYRQKMGAELSSPVVQVDLSVTVA 488

Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI-------RVVNL-AHLQMTFE---- 534
            +   L   L+   P G GNP P     N   +++       R      +++ +FE    
Sbjct: 489 ELGQDLFQELKLLEPCGMGNPVPKLLIQNCWFENVWHQKLKDRTGGKVGYIKTSFELCDE 548

Query: 535 ---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               + S     + +       G +       R  V   L  N    S+R ++R++D  P
Sbjct: 549 SGNHKSSSKFPGLWW-------GHYKEDVPPGRWDVVAELDYNSHPKSRRYEVRLIDIRP 601

Query: 592 VE 593
            +
Sbjct: 602 AQ 603


>gi|253581494|ref|ZP_04858719.1| LOW QUALITY PROTEIN: recombination protein J [Fusobacterium varium
           ATCC 27725]
 gi|251836564|gb|EES65099.1| LOW QUALITY PROTEIN: recombination protein J [Fusobacterium varium
           ATCC 27725]
          Length = 502

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 141/504 (27%), Positives = 250/504 (49%), Gaps = 18/504 (3%)

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149
              EK+ I+GDYDVDG  +   ++    +  +  + YIP+R+ +GYG +   ++    + 
Sbjct: 3   RKKEKVFIYGDYDVDGITAAVFLVLVFRNIGIEVDYYIPNRMEEGYGLDKKTIDFINTKN 62

Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209
            +L+ITVD G  S + ++YA + GIDVIV DHH+   EE   + L+   +L D     +L
Sbjct: 63  GKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEEDDHLLLLNPKLSDTYEFKYL 122

Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
             AGV   V   IY+ L+ D        L   +D+V + TV DVVP+   NR  + +GL 
Sbjct: 123 SGAGVALKVAQGIYQKLKID-----IKALYQYMDIVMIGTVADVVPMTDENRIIIKQGLK 177

Query: 270 VARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
             ++    GL  L++ +   +  I   ++ Y I P IN+ GRIG S +G+   + +D  E
Sbjct: 178 ALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLGRIGISKMGADFFLKEDDFE 237

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
           +  +  ++   N+ RR +E  + ++A  ++      I+    I +  ++WHPG++G++++
Sbjct: 238 IYNIIEEMKKSNKKRRELEKNIYDEANQEIAK--IGIKNLKCIFLSSEKWHPGVIGVVSS 295

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448
           RL  K+  P   I+F++ G G  S RS++G  I     F      LV+ GGH +AAG  V
Sbjct: 296 RLSVKYNIPVTLIAFKD-GIGKASCRSVKG--ISVFNIFQKMSEKLVRFGGHDLAAGFIV 352

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  N   + + F+    N +         KID   +   ++  + + +ES  PYG  NP+
Sbjct: 353 KSENLEEVKNIFKTSIEN-IKIEKEKKSLKIDAEYSIENIDEDMFETMESISPYGLENPH 411

Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P+F   +   ++I+       H       ++ +    +AF + G  + E   +S+ ++  
Sbjct: 412 PLFIDRDLSFENIKKFGVDERHFNGIIR-KNGKNYHMVAFDL-GHKINEI--ESKIQKFD 467

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +     +RG +  Q+R+ D  
Sbjct: 468 IVYYPEKTLYRGEEIFQIRIKDIK 491


>gi|297622720|ref|YP_003704154.1| single-stranded-DNA-specific exonuclease RecJ [Truepera
           radiovictrix DSM 17093]
 gi|297163900|gb|ADI13611.1| single-stranded-DNA-specific exonuclease RecJ [Truepera
           radiovictrix DSM 17093]
          Length = 725

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 153/580 (26%), Positives = 246/580 (42%), Gaps = 48/580 (8%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI-- 74
           RW              + +  ++P +VA VL  R +    A   L P        P    
Sbjct: 15  RWAVRPSAP-PAEVARLVRAFSLPPLVASVLWARGLRSPEA---LQP--------PFERT 62

Query: 75  -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
            +     AA R+ +A+   ++I+I GDYD DG +  A++   L         +IP+R+ D
Sbjct: 63  RIPALATAAERLAEALARGKRILIHGDYDADGISGTAVLTLGLRALGGRVTPFIPNRLRD 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           GYG +P+ + +    GA L ITVDCG ++   +      G++VIV DHH           
Sbjct: 123 GYGVHPARVAEHAA-GADLFITVDCGISNRAEVAALQAAGVEVIVTDHHHPGQVLPDCLT 181

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +          G   L  AGV + +L  ++  L  +  V          DL  + TV DV
Sbjct: 182 VHPSLSPYAKKGLPELTGAGVAYHLLWALHEHLGLEAPV-------EYSDLATIGTVADV 234

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLK-ALIERVNISSPITAENLGYMIGPSINAGGRIG 312
            PL+G NRA V  GL    R   PGL+  +   ++     +A  + +++ P +NA GR+G
Sbjct: 235 APLMGENRALVTAGLAQLARSRWPGLRAMMARTLSHGRAPSAREVAFVLAPRLNAAGRLG 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           E++LG  LL +   +    LA  LD  N +RR ++ AML +A   V        +A  +V
Sbjct: 295 EADLGLELLTTASERRALELASYLDARNADRRKVQDAMLGEALKLV------DPEAPALV 348

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +E   WHPG++G++A++L E+F +P F I+      G GS RS  G  I  +        
Sbjct: 349 LERPSWHPGVMGIVASKLLERFYKPVFIIAQ-----GKGSVRSTPG--ISAVGGLEYARD 401

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L + GGH+ AAG  +         +    +A          P    D +L    ++  L
Sbjct: 402 LLERFGGHSQAAGFAIREGCVEAFRERVYDYARQHPTP---RPELVADTLLAPDEIDTDL 458

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
              L +  PYG G+P P FA     L+ +  +      +         ++ +A+      
Sbjct: 459 YRALCTLEPYGEGHPAPRFALC-APLEGVGCMGEGGKHLNLRVGG---VRGVAWDRG--- 511

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             +         ++    L  N W+G  + +L   D  P 
Sbjct: 512 -ADAPALRAAGVINAAVTLRENTWQGKTQLELLADDVRPA 550


>gi|218515524|ref|ZP_03512364.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           8C-3]
          Length = 434

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 245/434 (56%), Positives = 312/434 (71%), Gaps = 1/434 (0%)

Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220
           TS+DAL  A  + IDV+VIDHHQV  E    +ALVNPNR DDLSGQGHLCAAGVVF+VLV
Sbjct: 1   TSHDALAAAAARDIDVVVIDHHQVTHELPRCHALVNPNREDDLSGQGHLCAAGVVFMVLV 60

Query: 221 LIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
              R+LR       L  DLL  LD+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL
Sbjct: 61  ATLRLLRAAGNKRILAIDLLQWLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGL 120

Query: 280 KALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339
            AL  +  +S P+T  + G++IGP INAGGRIG++ LGSRLL  DD+ E E++A +LD L
Sbjct: 121 AALFRKAGLSGPVTPYHFGFLIGPRINAGGRIGDAALGSRLLTLDDAGEAEVIAQRLDEL 180

Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
           N+ R+ ME+ ML++AEA+ L +  D + ASVIV   ++WHPGIVGL+AARLKEKF RP+F
Sbjct: 181 NRERQAMEAMMLQEAEAEALAEYGDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAF 240

Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
           AI+F+  G+G GSGRSI GFD+G+MV  AV+EG+LVKGGGHAMAAGLTVER + GRL  F
Sbjct: 241 AIAFDPSGRGTGSGRSINGFDMGRMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTF 300

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
           F + A   V  L+     KIDG + AS   + LID LE+AGPYG+G+  P+FA P H+++
Sbjct: 301 FTEKAARTVANLVANETLKIDGAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVR 360

Query: 520 SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
             R+V   H+++T E+ D   L  IAFR   T LG  L+ SRG  +HV G L  ++++G+
Sbjct: 361 DARLVGEKHVKVTLEAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGA 420

Query: 580 KRCQLRVLDASPVE 593
           +R Q+RV DA+P +
Sbjct: 421 RRIQMRVCDAAPAK 434


>gi|229124050|ref|ZP_04253242.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           95/8201]
 gi|228659352|gb|EEL15000.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           95/8201]
          Length = 553

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 149/564 (26%), Positives = 240/564 (42%), Gaps = 40/564 (7%)

Query: 18  WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           W  L             L + +   I  ++   L    + + +    FL P       +P
Sbjct: 3   WKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFH-NP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  +A  RI++AI   E I IFGDYD DG  S  ++ + L     +    +P R  
Sbjct: 62  FLLNDMKRAVDRILKAIQQKESIYIFGDYDCDGITSSTILKQALEKLGAHVMTRLPLR-E 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +P  +   + E   L+ITVD GS+++ A++ A  +GIDVIV DHH+V  E     
Sbjct: 121 EGYGLSPYAV-NSLPENISLLITVDNGSSAHPAMKRAKEKGIDVIVTDHHEVLGEHPDCL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A +NP R D+     HLC AGV   ++  ++  L+QD            ++   + T+ D
Sbjct: 180 AFINPKRRDNKYPYPHLCGAGVALKLIQALFMTLKQDWVKETWH----YIEYATIGTIAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           V+PL G NR     GL   R   N  L+   E++ +   I +  +G++IGP +N+ GRI 
Sbjct: 236 VMPLTGENRVICWYGLYKMRNCPNKLLQLFREQLQLK-YIDSTTIGFLIGPMLNSCGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N+G+ +L              L  LN  R+L+ +   + A   +  Q  +      ++
Sbjct: 295 DPNIGAAILQKAAPTTA--DVQLLINLNNKRKLLTTEQFKLAADIIEQQSLE---KDSLL 349

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H GI+G+LA+++   + RP+  ++ +  G    S RS  G     + +      
Sbjct: 350 VVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVG----SARSGNGSKFSIIQAIQSCSE 405

Query: 433 ILVKGGGHAMAAGLTV--ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +L K GGHA AAGL++  E  +  +  +  Q+ A     +    P               
Sbjct: 406 LLKKFGGHAAAAGLSIASEESHIQKFRECMQEAAQQQNTS---QPTSYFISEFPIYNFPN 462

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L D L +  P+G G+P P F   N              H++  F  +          R 
Sbjct: 463 HLFDDLMALEPFGNGHPKPSFRSKNIFACGHSCFGKNKEHVEFFFSKK----------RA 512

Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHL 571
           Y    G      +R  RM V    
Sbjct: 513 YAYSHGHLFQNWNRYNRMDVLYTP 536


>gi|94985699|ref|YP_605063.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           geothermalis DSM 11300]
 gi|94555980|gb|ABF45894.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           geothermalis DSM 11300]
          Length = 702

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 158/580 (27%), Positives = 253/580 (43%), Gaps = 48/580 (8%)

Query: 12  SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71
           S+   RW+            ++ +   +   +A+VL  R ++  +    L      L P+
Sbjct: 7   SLPEARWLLAPPASRAALLESM-RLWGVAPPLAQVLHARGLTPAHLDAPLR-----LTPN 60

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           P +     +AARRIV AI    +I I GDYD DG ++ A ++  L       + +IP R+
Sbjct: 61  PAL----REAARRIVGAIRAGRRIRIHGDYDADGVSATATLILGLREVGAEVHGFIPHRL 116

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +GYG +P  +E+       L++TVDCG T+ + ++    +G+DVIV DHH    +    
Sbjct: 117 NEGYGLHPDRVEEHAA-ACDLLVTVDCGVTNLEEVRALLARGLDVIVTDHHAPGPDYPDC 175

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +             +L  AGV + +L  ++  L            L L  L  L T+ 
Sbjct: 176 LVVHPHRTTGYDPELHNLTGAGVAYHLLWAVHEELGL-------PAPLELAGLATLGTIA 228

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           DV PLIG NRA V  GL        PG++AL+    +    +  ++ +++ P +NA GR+
Sbjct: 229 DVAPLIGENRALVRAGLDALATSTLPGVRALLNAKRVER-PSVRDVAFLLAPLVNAAGRL 287

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           GE++L  +LL +    E   LA  L+  NQ RR+++  M E+A            +   I
Sbjct: 288 GEADLALQLLTTTSDHEARTLATYLESRNQERRVLQDRMYEEALGLA------DPEEPAI 341

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           VV    WH G++G++A++L E F +P + ++      G GS RS  G  I  +       
Sbjct: 342 VVTKPDWHAGVMGIVASKLVETFHKPVYIVAQ-----GKGSVRSTPG--ISAVEGLRYSH 394

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L + GGH  AAG  ++  NF  L D    +           P++++D  L   A    
Sbjct: 395 DLLKRYGGHPGAAGFALDEANFEALRDRLHTYVRQFPRP---VPMWRLDAPLPTRAATPE 451

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551
           L+    +  PYG G+P P++      L S R+V      + F+      L+ I       
Sbjct: 452 LVRQAAAFEPYGTGHPPPLWHMREV-LSSTRLVGKRGDSLQFQIGG---LRGIQHGERDA 507

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
             GE           +  HL    WRG  R +L      P
Sbjct: 508 VPGER---------DLATHLVRGEWRGQTRLELHGQALRP 538


>gi|257061378|ref|YP_003139266.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8802]
 gi|256591544|gb|ACV02431.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8802]
          Length = 776

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 144/606 (23%), Positives = 265/606 (43%), Gaps = 50/606 (8%)

Query: 17  RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           +W  L           I +++   +  +  A++L  R +   D    FL+ +       P
Sbjct: 7   QWQILPSLSVPLWFREIVKRYTPDSTGEYAAQLLWQRGIQDKDELLGFLDANAYH-PSSP 65

Query: 73  LIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIP 128
                +  +A  R+ +A    EK+ I+GD+D DG  + +++   L       +  N YIP
Sbjct: 66  FAFGQEMKRAVERLKKAYETKEKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNYYIP 125

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R+ + +G N   +++    G QLI+T D GST+   + YA   G+D+I+ DHH +  + 
Sbjct: 126 NRLTESHGLNCQGIDQLATAGTQLIVTCDTGSTNLAEIDYANRLGLDIIITDHHTLPDDR 185

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
            P  A++NP    +     +L    V + ++   Y    +  + P    L +LLDLVA+ 
Sbjct: 186 PPVIAIINPRYFSNNYPLFNLSGVAVAYKLVQAFYETYPEIPQQP----LENLLDLVAIG 241

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQG----NPGLKALIERVNISSPITAENLGYMIGPS 304
            + D+V L G  R    KG+   ++Q      PG+  L+E    S      ++ Y IGP 
Sbjct: 242 LIADLVELRGDCRYLAQKGIEQLQKQRQFPTRPGIAKLLEYCKRSGD-RPTDISYGIGPR 300

Query: 305 INAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
           INA  R  G++     LL S D +  + LA++ ++ N  R+ ++  +++  + K+     
Sbjct: 301 INAISRIHGDATFAVELLTSRDQERCQQLALETELANTRRKALQQTVIKDVKKKLDQL-- 358

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--------GIGSGRS 415
           D+    VIV++  +W  G++GL+A ++ +++GRP+  ++  E  K          GS RS
Sbjct: 359 DLSTTGVIVLDDPQWPNGVLGLVAGQIAQEYGRPTILLTTAETEKLGENGVKLARGSARS 418

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITT 474
           +   D+ ++VS   ++ +L + GGH  AAGL++   N     +   +     V  + +  
Sbjct: 419 VNQIDLYELVSS--QKYLLYRFGGHPFAAGLSLPLENLSIFKESINQKLRQTVHDISLLK 476

Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA- 527
              + D V+  + +   L   L+   P G GN  P     N    +I       +     
Sbjct: 477 TTIEADLVVTVADLGQFLFRELKLLEPCGMGNRVPKLLIQNCWFDNIINYNSKDLRGDKI 536

Query: 528 -HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
            +++  FE  D   ++    + +  Y   L +       K       L  N +      +
Sbjct: 537 QYIRTKFEMYDEYSNQGFPGVWWGHYKEDLPQ------NKPQDAIVELDYNSYSKRYEVR 590

Query: 584 LR-VLD 588
           L  + D
Sbjct: 591 LIAIRD 596


>gi|220906597|ref|YP_002481908.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7425]
 gi|219863208|gb|ACL43547.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           7425]
          Length = 813

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 138/586 (23%), Positives = 250/586 (42%), Gaps = 51/586 (8%)

Query: 43  VARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
            A++L  R +   D  + FL+P        P        A  R+ +A    EK+ I+GD+
Sbjct: 39  TAQLLWQRGIRDRDQLQGFLDPDHYQ-PASPFQFAQMMLAVERLQRARQRGEKVAIWGDF 97

Query: 102 DVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D DG  + A++   L +  +        IP+R+++ +G N + +++    G  LI+T D 
Sbjct: 98  DADGITATAVLWEGLGNFFIQEEQLIYTIPNRLIESHGLNLAGIDRLKAAGCTLIVTCDT 157

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           GST+   ++YA + G+DVIV DHH +     P  AL+NP   +      HL    V + +
Sbjct: 158 GSTNQTEIEYANSLGMDVIVTDHHTLSPIPPPVVALINPREFEADHPLAHLSGVAVAYKL 217

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL----MVARRQ 274
           +  +Y  L +    P    L  LLDLVA+  + D+V L G  R    +G+       +  
Sbjct: 218 VEALYLTLPEVPLAP----LTDLLDLVAIGLIADLVQLRGDCRYLAQRGIAQLQKQLQNP 273

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLA 333
             PG+  L+E    +      ++ + +GP INA  R  G+++    LL S +      LA
Sbjct: 274 TRPGVAKLLELCRKTGD-RPTDISFGLGPRINAVSRIQGDAHFCVELLTSWEVDRCNELA 332

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           ++ ++ N  R+ ++   + Q   ++  +  D+     IV+   +W  GI+GL+A ++ ++
Sbjct: 333 LETELANTRRKALQKETVTQVRRQL--ERLDLSTTRAIVLVDSQWPAGILGLVAGQIAQE 390

Query: 394 FGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
           +G P+  +  ++    DG+ +  G +     I     FA ++ +L + GGH +AAGL++ 
Sbjct: 391 YGCPTVLLHADDLDDRDGQTLAKGSARSVQQIDLYALFAEQQHLLHRYGGHPLAAGLSLP 450

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-------NIALIDMLESAGPY 502
             N                          ID V+  + +          L   L+   PY
Sbjct: 451 LANVPLFRQALNHKLGQYPHLETRAGSISIDLVVTVADLIGEGNRPGEDLFQALKLLEPY 510

Query: 503 GAGNPNPVFAFPNHKLQSI-----RVVNLAHLQ-----MTFESQDS-ETLQAIAFRVYGT 551
           G GNP P     N  +++      + +    L+          + + ++   + +  Y  
Sbjct: 511 GMGNPAPRLMISNCWVENPWNQNLKDLQGNKLRYIKTEFRLRDETTDQSFPGVWWEHYRE 570

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYW----RG-SKRCQLRVLDASPV 592
            L +        R  V   L  N +    RG   R ++R++   P 
Sbjct: 571 ELPQ-------GRADVVVELDFNSYANPRRGIQPRYEIRLIAVRPH 609


>gi|229163463|ref|ZP_04291414.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           R309803]
 gi|228620032|gb|EEK76907.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           R309803]
          Length = 555

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 145/567 (25%), Positives = 242/567 (42%), Gaps = 38/567 (6%)

Query: 18  WVSLLGQEGIN----RALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72
           W  L      +    R L ++++  +  ++   L  + ++ +     FL P++     +P
Sbjct: 5   WKQLNTPFEQHPFHGRILYLSRQVNLDPLLGYHLFLQGMTTEEQFSSFLYPNVSQFH-NP 63

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  +A +RI++AI+  E I IFGDYD DG  S  ++ + L          +P R  
Sbjct: 64  FLLNDMKQAVQRILKAIHQKENIYIFGDYDCDGITSSTILKQALEKLGGRVQTRLPLR-E 122

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +P  +   I E   L+ITVD GS+S+ A+Q +  +G+DVIV DHH+V  +     
Sbjct: 123 EGYGLSPLAVNA-IPEHVSLLITVDNGSSSHSAIQRSKERGLDVIVTDHHEVLGKHPDCL 181

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A +NP R D+     HLC  GV   ++  ++  L+QD          S ++   + T+ D
Sbjct: 182 AFINPKRKDNTYPFEHLCGVGVALKLIQALFITLKQDWIKETW----SYIEYTTIGTIAD 237

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           V+PLIG NR     GL   R   NP L  L         I + ++G++IGP +N+ GRI 
Sbjct: 238 VMPLIGENRVICWYGLQKMRTTPNP-LMRLFREHLQFKYIDSTSIGFLIGPMLNSCGRIS 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N+ + +L  +   +       L  LN  R+ + S   + A   +  Q  +      ++
Sbjct: 297 DPNIAAVILQKNAPTK--EDVQLLINLNNKRKQVTSEQFQLALKIIQQQSLE---RDHLL 351

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H GI+G++AA+L   + +P+  ++ +  G    S RS  G     + +      
Sbjct: 352 VVQGDFHKGIIGIIAAKLSNHYKKPTIVLTQDGVG----SARSGNGSKFSIVRAIQFGSE 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +L K GGH  AAGL++                       +    + ID           +
Sbjct: 408 LLKKYGGHEAAAGLSIVPTEKNIQQFRSHMQEAAKQQTNVKPVAYFID-EFPIYNFPDHV 466

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550
            + L +  P+G G+P P F   N              H+Q  F  +          R Y 
Sbjct: 467 FNDLIALEPFGNGHPKPTFRSHNVFSCGHSRFGKNKEHIQFFFSKK----------RAYA 516

Query: 551 TPLGEFLMQ-SRGKRMHVTGHLCVNYW 576
                     ++  RM V      N +
Sbjct: 517 YSHAHLFQNWNQNNRMDVLYTP--NSY 541


>gi|332708922|ref|ZP_08428893.1| single-stranded-DNA-specific exonuclease RecJ [Lyngbya majuscula
           3L]
 gi|332352464|gb|EGJ32033.1| single-stranded-DNA-specific exonuclease RecJ [Lyngbya majuscula
           3L]
          Length = 933

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 149/632 (23%), Positives = 273/632 (43%), Gaps = 67/632 (10%)

Query: 14  SGFRWVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNVSID-YAKDFLNPSIRLLM 69
           S  +W  L   E     +   + H      D  A++L  R +  +     FLNP +    
Sbjct: 2   SQSQWQVLAPPEIPQWFIEAVKSHTKGYSGDYAAQLLWQRGIREERQLAGFLNPDLYQ-P 60

Query: 70  PDPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANM 125
             P     +   A +R++QA     K+ I+GD+D DG  + +++   L          + 
Sbjct: 61  TSPFDFGQEMKWAVKRLLQAREAGAKVAIWGDFDADGITATSVLWEGLGQFFWQHQQLSY 120

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           YIP+R+ + +G N   +++    G +LI+T D GST+   + YA   G+DVI+ DHH + 
Sbjct: 121 YIPNRLTESHGLNCPGIDQLNASGVKLIVTCDTGSTNLREIDYAHQLGMDVIITDHHTLP 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            +  P  +++N     +     HL    V + ++  +Y++L           L  LLDLV
Sbjct: 181 DDRPPVVSMINSRYFAETHPLFHLSGVAVAYKLVEAMYQVLP----NIPQQRLEGLLDLV 236

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARR----QGNPGLKALIERVNISSPITAENLGYMI 301
           A+  + D+V L G  R    +G+   ++    +  PG+  L++    S      ++ + +
Sbjct: 237 AIGLIADLVELSGDCRYLAQRGIEQLKQQLKTRSRPGIARLLQLCKRSGD-RPTDISFGL 295

Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           GP INA  R  G+++    LL S D +  E LA++ ++ N  R  ++  + +Q + K+  
Sbjct: 296 GPRINAVSRIQGDASFCVELLTSKDEKRCEQLALETELANTRRMSLQKDITKQVKDKLAQ 355

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS------------------ 402
              D+   +VIV+E  +W  G++GL+A ++ +++GRP+  +S                  
Sbjct: 356 L--DLSTTNVIVLEDPQWPVGVLGLVAGQIAQEYGRPTILLSTVLLSTESSDRESKLVEA 413

Query: 403 ----FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
                       GS RS+   D+ ++V+   +  +L + GGH  AAGL++   N     +
Sbjct: 414 GLEDKHSYSIARGSARSVNNIDLYELVNS--QAHLLHRFGGHPFAAGLSLPVDNIPLFRE 471

Query: 459 FFQKFAHNIV--PALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
              +     +     +  P  + D V+  + +  AL D L+   P G GNP P     N 
Sbjct: 472 AINQQLAQKLGTTGALMMPAMEADLVVKVAELGKALFDELKHLEPCGMGNPVPKLLIKNC 531

Query: 517 KLQSI--------RVVNLAHLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRM 565
             + +        R   + +++  FE  D  T      I +  Y   + +        R 
Sbjct: 532 WFEQVLNRNSKDLRGRKVQYIKTKFEIWDDSTSMGFPGIWWGHYQDEVPKV-------RC 584

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
           +    L  N +   KR ++R++   P + + F
Sbjct: 585 NAVVELDYNNY--EKRPEVRLVAVQPCQENDF 614


>gi|15611390|ref|NP_223041.1| putative single-stranded-DNA-specific exonuclease RECJ
           [Helicobacter pylori J99]
 gi|4154859|gb|AAD05912.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
           [Helicobacter pylori J99]
          Length = 516

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 140/510 (27%), Positives = 247/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFKSLNYKHVRVAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G  +++A Q+   +   +I+ DHH     
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGCSLYERLKACNMKRKMIQQQVFEEAFRHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P   T P       LN 
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFYETEPPLT----LNL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+R+ V   + ++ 
Sbjct: 481 FNADRF-------LKAGERVSVLFSVELDE 503


>gi|307637035|gb|ADN79485.1| Single-stranded-DNA-specific exonuclease [Helicobacter pylori 908]
 gi|325995627|gb|ADZ51032.1| Single-stranded-DNA-specific exonuclease [Helicobacter pylori 2018]
 gi|325997223|gb|ADZ49431.1| Single-stranded-DNA-specific exonuclease [Helicobacter pylori 2017]
          Length = 516

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 137/510 (26%), Positives = 247/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFKSLNYKHVRVVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G  +++A Q+   +   +I+ DHH     
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   AYA++NP + D    Q  +C A V F +   I+++L+++           LL L  
Sbjct: 140 KIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLKKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNIKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGHA A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHAQACGLSVGKNNIVSLFETLENFDFKVLPFYEKEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDE 503


>gi|317010620|gb|ADU84367.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           SouthAfrica7]
          Length = 516

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 141/516 (27%), Positives = 253/516 (49%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+    +I++ GDYD DG  S  +M +F +  +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMEKRTEILVVGDYDADGVISSTIMAKFFASLNYKHVRVAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  DGYG +   +EK     A LIITVD G  +++A Q+   +   +I+ DHH ++ +
Sbjct: 83  PNRFRDGYGISKQFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLQDD 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
            IP  YA++NP + D    Q  +C A V F +   I+++L+++           LL LV 
Sbjct: 140 GIPDAYAVINPQQPDCHFIQKEVCGALVAFYLCYGIHQLLKKEKSHSS-----ELLCLVG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L  + V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKEPLGAIGFLRQKEVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++ +  + E+A          +
Sbjct: 255 NSAGRMQDARVALDFLNANNLQDCCFLYERLKACNNERKITQQQVFEEAFKHA------L 308

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +I+   D WH G++G++A++L E   +PS   +F+E G   GSGRS +  D+  + 
Sbjct: 309 VGEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GAYKGSGRSSQNVDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+VE+ N   L +  + F   I+P     P      +L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVEKNNMVSLFETLENFDFKILPFCEEEPPL----ILRL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   RV+  +H  + F+ ++     AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEERVIKESHQALRFKDKECIK-DAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++ V   + ++ +    +
Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDEYSNEPK 509


>gi|297538992|ref|YP_003674761.1| phosphoesterase RecJ domain-containing protein [Methylotenera sp.
           301]
 gi|297258339|gb|ADI30184.1| phosphoesterase RecJ domain protein [Methylotenera sp. 301]
          Length = 591

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 148/594 (24%), Positives = 270/594 (45%), Gaps = 40/594 (6%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF--LNPSIRLLMPDPLILT 76
           +    +        + +    PD +A++L +R   +D    F  L  +    + DP  + 
Sbjct: 8   IFKFRESDDAVIATLIES-GSPDWLAKILSSR---LDKPMGFNSLYSNDLTDVEDPSAIP 63

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIV 132
           D D A  RIV+AI + EKI +  D+D+DG  S A++   L           N+    R+ 
Sbjct: 64  DMDIAVSRIVRAINDEEKITLVCDHDMDGTGSAAVLWSALIDFFKVKDTLVNVVTSHRLT 123

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG    + ++ I+    L+I+ D GS+    ++     GIDVIV DHH++ +   P  
Sbjct: 124 EGYGITEPVAQRIIDLKPGLVISADKGSSDEPRIKKIAEAGIDVIVTDHHEIGANGPPKS 183

Query: 193 ALVNPNRL-DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           A+   N +  D S   H+C AGV FL +  +   L Q         +  LLD VA+AT+ 
Sbjct: 184 AIAVVNPIRVDSSYDKHVCGAGVAFLTMAKVRTALIQAGVRNHIPSIAPLLDYVAVATIA 243

Query: 252 DVVPLIG----LNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
           D V +       NR +V +GL +   +  P  +      ++  P+ AE +G+ + P++ A
Sbjct: 244 DCVSMKPSKASTNRTFVKRGLQLINSKSRPCWEVFSS--DLQGPVDAETIGFRLAPAVAA 301

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            GR+  + +G + LIS  +Q+ +   ++L   N  R+ +E  + E+A  +   +      
Sbjct: 302 AGRLDWAEIGFKFLISKTTQDAQKYWIELQHENALRKDIEKKLREKAIPEACKKLGQ--- 358

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-----------GSGRSI 416
              IV+  +  H G+ G+ A+RL E FG+P+   S +  G              GS R I
Sbjct: 359 --SIVLFFEDGHSGVHGITASRLVEAFGKPAAIFSPKGAGVKNSTSRDEVKLASGSFRGI 416

Query: 417 EGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
            GF++ + +S+       +L+  GGH  A G ++   +F      +++     +      
Sbjct: 417 PGFNVKEALSYVGDKYPELLLSHGGHVGAGGGSILIDSFDDFVIAYEEAVQAQIGDKELK 476

Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTF 533
           P   +DG L     +  ++  L+   P+G   P P F     +++SI+ +    HL+++ 
Sbjct: 477 PTIWVDGELPLGVNDFDVLSELDKLEPWGRDFPYPTFKGK-FEVRSIKKLGDGSHLKLSL 535

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
               +    AI F    +  G+ ++ + G  +     L  N++R +++ QL+++
Sbjct: 536 YDGLNSK-DAIWFNAVQS--GDEVLFTIGSNLSFVYSLKSNWYRNNRKIQLQII 586


>gi|109947517|ref|YP_664745.1| single-strand DNA-specific exonuclease [Helicobacter acinonychis
           str. Sheeba]
 gi|109714738|emb|CAJ99746.1| single-strand DNA-specific exonuclease [Helicobacter acinonychis
           str. Sheeba]
          Length = 516

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 137/516 (26%), Positives = 257/516 (49%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+    +I++ GDYD DG  S  +M +F +  +    ++ I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMEKYTEILVVGDYDADGVISSTIMAKFFASLNYKHVHVAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK+      LIITVD G  +++A ++   +   +I+ DHH +++ 
Sbjct: 83  PNRFMDGYGISKQFLEKYHA---PLIITVDNGINAFEAARFCKEKNYTLIITDHHCLQNN 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L+++           LL LV 
Sbjct: 140 EVPDAYAVINPQQPDCHFIQKEVCGALVAFYLCYGIHQLLKKEKSHSS-----ELLCLVG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L  + V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKEPLGAIGFLRQKEVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++ +  + E+A          +
Sbjct: 255 NSAGRMQDARVALDFLSTNNLQDCCFLYERLKACNNERKITQQQVFEEAFKHA------L 308

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +I+   D WH G++G++A++L E   +PS   +F+E G   GSGRS +  D+  + 
Sbjct: 309 VGEKIIIALKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GAYKGSGRSSQNVDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+VE+ N   L +  + F   ++P     P      +L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVEKNNMVSLFETLENFDFKVLPFCEKEPPL----ILRL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++S    AI 
Sbjct: 422 KDIDKELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQALRFKDEESVK-DAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++ V   + ++ +    +
Sbjct: 481 FNAERF-------LKVGEKVSVLFSVELDEYSNEPK 509


>gi|308063207|gb|ADO05094.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           Sat464]
          Length = 516

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 136/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEATRFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI-ERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLCQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNILSLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|172037338|ref|YP_001803839.1| single-strand-DNA-specific exonuclease [Cyanothece sp. ATCC 51142]
 gi|171698792|gb|ACB51773.1| single-strand-DNA-specific exonuclease [Cyanothece sp. ATCC 51142]
          Length = 781

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 151/609 (24%), Positives = 272/609 (44%), Gaps = 52/609 (8%)

Query: 17  RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           +W  L         L I   +      I    A++L +R + + +  + FL+ +    + 
Sbjct: 7   QWEVLPIVSLPAWFLDIVNSYCTDSQGI--YAAQLLWHRGIQTPEELQGFLDANYYYPL- 63

Query: 71  DPLILT-DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126
            P     +   A +R+  A+ N EK+ I+GD+D DG  + +++   L       +  N Y
Sbjct: 64  SPFEFGCEMKLATKRLEVAMNNQEKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNYY 123

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP+R  + +G N   ++K  +EG +LI+T D GST+ + + YA +  ID+IV DHH + +
Sbjct: 124 IPNRATESHGLNIPGIKKLADEGTKLIVTCDTGSTNIEEINYANSLEIDIIVTDHHTLPN 183

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +     +++NP    +      L    V + ++  +Y    +  + P    L +LLDLVA
Sbjct: 184 DRPNVVSIINPRYFYEDHPLFSLSGVAVAYKLVEALYLSFPEIPESP----LENLLDLVA 239

Query: 247 LATVCDVVPLIGLNRAYV----VKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           +  + D+V L G  R        K     +    PG+  L+            ++ + IG
Sbjct: 240 IGLIADLVELKGDCRYLAQQGLKKLQQQLKNTTRPGVAHLLNLCKRGGD-RPTDISFGIG 298

Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           P INA  R  G+++    LL S D +  + LA + ++ N  R+ ++  + +  E K+  Q
Sbjct: 299 PRINAISRIQGDAHFAVELLTSKDEERCKELAFETELANTRRKSLQKDIKKNVEKKL--Q 356

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------IGSG 413
             D+    VIV+E  +W  G++GL+A ++ +++GRP+  ++  E  K          GS 
Sbjct: 357 MLDLSTTQVIVLEDPQWQSGVLGLVAGQIAQEYGRPTILLTTAETEKMSESDLKLARGSA 416

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA-HNIVPALI 472
           RS+   D+ K+V  A +  +L K GGH  AAGL++   N     +   +     I+    
Sbjct: 417 RSVYNIDLYKLV--ASQRDLLHKFGGHPFAAGLSLPVENLSLFRENINRKLRQEIIDLNT 474

Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRVV 524
            +   + D V+  S +  +L   L+   PYG GNP P     N          ++  +  
Sbjct: 475 LSSTIQADLVVTVSQLGQSLFRELKLLEPYGMGNPVPRLLIQNCWFEALGNQNIRDAKNN 534

Query: 525 NLAHLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
            + +++  F+  D+        I +        E L Q + KR      L  N + G  R
Sbjct: 535 KIKYIKTKFDIYDNSVDEGFPGIWW----EHYQEELPQGKNKRCDAIVELDYNTY-GKGR 589

Query: 582 CQLRVLDAS 590
            ++R+++  
Sbjct: 590 YEVRLIEVR 598


>gi|218247287|ref|YP_002372658.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8801]
 gi|218167765|gb|ACK66502.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC
           8801]
          Length = 776

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 144/606 (23%), Positives = 265/606 (43%), Gaps = 50/606 (8%)

Query: 17  RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           +W  L           I +++   +  +  A++L  R +   D    FL+ +       P
Sbjct: 7   QWQILPSLSVPLWFREIVKRYTPDSTGEYAAQLLWQRGIQDKDELLGFLDANAYH-PSSP 65

Query: 73  LIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIP 128
                +  +A  R+ +A    EK+ I+GD+D DG  + +++   L       +  N YIP
Sbjct: 66  FAFGQEMKRAVERLKKAYETKEKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNYYIP 125

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R+ + +G N   +++    G QLI+T D GST+   + YA   G+D+I+ DHH +  + 
Sbjct: 126 NRLTESHGLNCQGIDQLATAGTQLIVTCDTGSTNLAEIDYANRLGLDIIITDHHTLPDDR 185

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
            P  A++NP    +     +L    V + ++   Y    +  + P    L +LLDLVA+ 
Sbjct: 186 PPVIAIINPRYFSNNHPLFNLSGVAVAYKLVQAFYETYPEIPQQP----LENLLDLVAIG 241

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQG----NPGLKALIERVNISSPITAENLGYMIGPS 304
            + D+V L G  R    KG+   ++Q      PG+  L+E    S      ++ Y IGP 
Sbjct: 242 LIADLVELRGDCRYLAQKGIEQLQKQRQFPTRPGIAKLLEYCKRSGD-RPTDISYGIGPR 300

Query: 305 INAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
           INA  R  G++     LL S D +  + LA++ ++ N  R+ ++  +++  + K+     
Sbjct: 301 INAISRIHGDATFAVELLTSRDQERCQQLALETELANTRRKALQQTVIKDVKKKLDQL-- 358

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--------GIGSGRS 415
           D+    VIV++  +W  G++GL+A ++ +++GRP+  ++  E  K          GS RS
Sbjct: 359 DLSTTGVIVLDDPQWPNGVLGLVAGQIAQEYGRPTILLTTAETEKLGENGVKLARGSARS 418

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITT 474
           +   D+ ++VS   ++ +L + GGH  AAGL++   N     +   +     V  + +  
Sbjct: 419 VNQIDLYELVSS--QKYLLYRFGGHPFAAGLSLPLENLSIFKESINQKLRQTVHDISLLK 476

Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA- 527
              + D V+  + +   L   L+   P G GN  P     N    +I       +     
Sbjct: 477 TTIEADLVVTVADLGQFLFRELKLLEPCGMGNRVPKLLIQNCWFDNIINYNSKDLRGDKI 536

Query: 528 -HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
            +++  FE  D   ++    + +  Y   L +       K       L  N +      +
Sbjct: 537 QYIRTKFEMYDEYSNQGFPGVWWGHYKEDLPQ------NKPQDAIVELDYNSYSKRYEVR 590

Query: 584 LR-VLD 588
           L  + D
Sbjct: 591 LIAIRD 596


>gi|167756848|ref|ZP_02428975.1| hypothetical protein CLORAM_02397 [Clostridium ramosum DSM 1402]
 gi|167703023|gb|EDS17602.1| hypothetical protein CLORAM_02397 [Clostridium ramosum DSM 1402]
          Length = 545

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 132/562 (23%), Positives = 243/562 (43%), Gaps = 38/562 (6%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           Q++ I  ++A+V   +  S    +  L+  +  +  D  + ++ +    RI +AI N EK
Sbjct: 16  QEYKINALLAKVFAYKQYSSQEIETMLSSRL--VYHDFSLFSEAEMTLERIHEAIGNKEK 73

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           I I+GDYD DG  + ++++       V    +IP R+ DGYG N + +E+  N+G  LII
Sbjct: 74  ICIYGDYDCDGILATSILVEAFRQLGVEVGYHIPSRLEDGYGLNANRVEQMANKGYTLII 133

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  +Y+A++ A   G+DVIV DHH    E   A+++++     D      +    V
Sbjct: 134 TVDNGIKAYEAIEKANELGVDVIVTDHHNYDDELPDAFSIIHTKISPD-YPYKEISGGFV 192

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            + +   + +   +            L  L A+ T+ D++PL+  NRA V + L   +  
Sbjct: 193 AYKLASALLKKHDK-----------YLFSLAAITTISDMMPLLDENRALVKRALEFMKEN 241

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL----E 330
             P L+ L   +  +   +  ++G++I P IN+ GR+ E    + L+    S       +
Sbjct: 242 KYPQLELL---LGSNQTYSVTSIGFIIAPKINSFGRLSEIINPNHLVKYFRSDASIGILK 298

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            ++ K   +N  R+ + +   +     +            +    +  H GI+GL+A + 
Sbjct: 299 AVSEKAIEVNAKRQELTNKQYQSVLTMI------DPNEQFLYAYQNEIHEGIIGLVAGKY 352

Query: 391 KEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
             ++ RPSF ++F+ E     GS R IEG  + K+      + +L   GGHA+A G +V 
Sbjct: 353 TRQYNRPSFVMTFDSEKNLYKGSARGIEGIPLNKIFENV--QDLLESYGGHALAGGFSVG 410

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                 L +  + + +  +       V  I   +  + ++   +  LE   P G GN   
Sbjct: 411 SDKVEELKEKLELYLNKQLKDYTPPLVDVI--EVTGNEISKVSVKQLELLEPLGNGNEEM 468

Query: 510 VFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F   +  +  +  + N  H++        +  QA+ F         F      K ++  
Sbjct: 469 RFFIKDLPVSKVTSLSNGKHIRFDLSLPQVKA-QALFFNHGDF----FEQLKDTKMINAV 523

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
           G   +N +   +   L + D  
Sbjct: 524 GKFNINVFNNIESVNLIIEDIK 545


>gi|15607096|ref|NP_214478.1| single-strand-DNA-specific exonuclease RecJ [Aquifex aeolicus VF5]
 gi|2984349|gb|AAC07869.1| single-strand-DNA-specific exonuclease RecJ [Aquifex aeolicus VF5]
          Length = 538

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 141/585 (24%), Positives = 261/585 (44%), Gaps = 57/585 (9%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
             + G RWV L  ++       + +K+    I+A+++ NR    + A  FLNP +  + P
Sbjct: 2   KGVKGRRWVLLYREKEPPSF--LVEKYG--RILAQLITNRGYERE-ADKFLNPKLSHI-P 55

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
               L   ++A  RI +A+   ++I+I+GDYDVDG    A++ R L          +P+R
Sbjct: 56  TYRELEGIEEAIERIKEAVLKKKRIIIYGDYDVDGITGTAILYRVLKLLGAKVYPVLPNR 115

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
              GYG N  LM     +    +ITVD G+++ + +  +    ++ +VIDHH V      
Sbjct: 116 QT-GYGLNKELM-SIFEKYGDFLITVDNGTSAVEEIDQS---SLETVVIDHHNVPPRIPK 170

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
              +VNP       G   L ++ + F +   + R    D          + LDLVAL  +
Sbjct: 171 KALIVNPKVGAKREGLKALSSSALSFYLGSALIREFNLDEDP------RNFLDLVALGLL 224

Query: 251 CDVVPLIGLNRAYVVKGL----MVARRQGN-PGLKALIERVNISSPITAENLGYMIGPSI 305
            D +P+  + R   VKG+     +A+ +   PG+KAL+E  +++  +T+ ++ + + P I
Sbjct: 225 ADYMPVNPVTRTLAVKGMYLLEKIAQGKVRKPGVKALLEISSVNGNVTSRDVYFSLAPRI 284

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GRI +      LL+ +D +    LA+KL+ +N+ R+ + +   ++A+ K + +    
Sbjct: 285 NAAGRISKPKFALDLLLEEDERRARELALKLEEINRRRKAITNLTYKEAKKKAIEEI--- 341

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
              + +VV  + WHPGI+G++A RL  +F +P    S    GK    G       I    
Sbjct: 342 -DKNFLVVWDEEWHPGILGIVAGRLAGEFNKPVAVFS---KGKTKAVGSIRSIESIDVYD 397

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
             +    + +K GGH  A GLT+         +   +    +  + +  P   +D  ++ 
Sbjct: 398 KVSTMRDMFLKWGGHDKAMGLTLPSNRLEEFREKVNQIFEKVKESEVIIP---VDMEIDP 454

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
                  +  ++S  P+G GNP+P F      ++ ++ +   + +++    +S  ++   
Sbjct: 455 REFGEEDLRTIKSLEPFGEGNPHPTFMT---TVKDVK-LGEGY-KVSI---NSVEMEC-- 504

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              + T L + L   +     +   L      G       + D  
Sbjct: 505 ---WDTELLKHLKIGK----KILYRLD----GGK----FILEDVE 534


>gi|226355584|ref|YP_002785324.1| single-stranded-DNA-specific exonuclease [Deinococcus deserti
           VCD115]
 gi|226317574|gb|ACO45570.1| putative single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           deserti VCD115]
          Length = 714

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 154/566 (27%), Positives = 255/566 (45%), Gaps = 48/566 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W+             +     +   +A+VL  R ++       L+P + +L P+P +   
Sbjct: 11  WLLAPPASREALLETM-HTWRVSPPLAQVLYGRGLTP----ALLDPPL-VLTPNPAL--- 61

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +AA R+VQAI  +++I I GDYD DG  + A+++  L     + + +IP R+ +GYG 
Sbjct: 62  -REAAHRLVQAIKANKRIRIHGDYDADGVTATAVLVLGLRALGADVHGFIPHRLNEGYGL 120

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +P  +E+    G  +++TVDCG T+ D ++     G++V+V DHH    +   A  +   
Sbjct: 121 HPDKIEEHAA-GCDVMVTVDCGVTNLDEVRGLVAMGVEVMVTDHHAPGPDFPDALVVHPH 179

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                     +L  AGV + +L  ++++L              L  L  L TV DV PLI
Sbjct: 180 LTDHYQPDLHNLTGAGVAYHLLWAVHQVLGLSAP-------QELAALATLGTVADVAPLI 232

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G NRA V  GL        PGL+AL++   + +  TA ++ +++ P INA GR+GE+++ 
Sbjct: 233 GENRALVRAGLQAMTSTDLPGLRALLDSGRV-ARPTARDVAFILAPRINAAGRMGEADVA 291

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             LL +  + +   LA  L++ NQ RR ++  M +QA A              +VV    
Sbjct: 292 LELLTTSSAHDARRLAEYLEIRNQERRKLQDVMFDQALAIA------DPSHPALVVTHPE 345

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
           WH G++G++A++L E + +P F I+      G GS RS  G  I  +        +L + 
Sbjct: 346 WHAGVMGIVASKLLETYHKPVFIIAQ-----GKGSVRSTPG--ISAVDGLRYSADLLKRF 398

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGH  AAG  ++        D    FA    P     P  ++D  L      + L+    
Sbjct: 399 GGHPGAAGFAIQEDRITAFQDRIHAFARQFPPPC---PQVRLDAPLPTLGATLDLLTEAA 455

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           +  P+G G+  P++   +  L   R+V      + F+      L+ I +       GE  
Sbjct: 456 AFEPFGQGHAPPLWHVRDV-LTETRLVGKRSDSLQFKVG---PLRGIKYGERDATPGER- 510

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQ 583
                    +  HL  N WRG  R +
Sbjct: 511 --------DLATHLTANEWRGQTRLE 528


>gi|317013786|gb|ADU81222.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori
           Gambia94/24]
          Length = 516

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 138/510 (27%), Positives = 247/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +  +  + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFKSLNYRHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G  +++A Q+   +   +I+ DHH     
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 KIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +I+   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGHA A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHAQACGLSVGKNNIVSLFETLENFDFKVLPFYEKEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   R++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEERIIKESHQILRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+R+ V   + ++ 
Sbjct: 481 FSAERF-------LKAGERVSVLFSVELDE 503


>gi|237734558|ref|ZP_04565039.1| single-stranded-DNA-specific exonuclease recJ [Mollicutes bacterium
           D7]
 gi|229382378|gb|EEO32469.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp.
           D7]
          Length = 550

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 132/562 (23%), Positives = 243/562 (43%), Gaps = 38/562 (6%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
           Q++ I  ++A+V   +  S    +  L+  +  +  D  + ++ +    RI +AI N EK
Sbjct: 21  QEYKINALLAKVFAYKQYSSQEIETMLSSRL--VYHDFSLFSEAEMTLERIHEAIGNKEK 78

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           I I+GDYD DG  + ++++       V    +IP R+ DGYG N + +E+  N+G  LII
Sbjct: 79  ICIYGDYDCDGILATSILVEAFRQLGVEVGYHIPSRLEDGYGLNANRVEQMANKGYTLII 138

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G  +Y+A++ A   G+DVIV DHH    E   A+++++     D      +    V
Sbjct: 139 TVDNGIKAYEAIEKANELGVDVIVTDHHNYDDELPDAFSIIHTKISPD-YPYKEISGGFV 197

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            + +   + +   +            L  L A+ T+ D++PL+  NRA V + L   +  
Sbjct: 198 AYKLASALLKKHDK-----------YLFSLAAITTISDMMPLLDENRALVKRALEFMKEN 246

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL----E 330
             P L+ L   +  +   +  ++G++I P IN+ GR+ E    + L+    S       +
Sbjct: 247 KYPQLELL---LGSNQTYSVTSIGFIIAPKINSFGRLSEIINPNHLVKYFRSDASIGILK 303

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            ++ K   +N  R+ + +   +     +            +    +  H GI+GL+A + 
Sbjct: 304 AVSEKAIEVNAKRQELTNKQYQSVLTMI------DPNEQFLYAYQNEIHEGIIGLVAGKY 357

Query: 391 KEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
             ++ RPSF ++F+ E     GS R IEG  + K+      + +L   GGHA+A G +V 
Sbjct: 358 TRQYNRPSFVMTFDSEKNLYKGSARGIEGIPLNKIFENV--QDLLESYGGHALAGGFSVG 415

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                 L +  + + +  +       V  I   +  + ++   +  LE   P G GN   
Sbjct: 416 SDKVEELKEKLELYLNKQLKDYTPPLVDVI--EVTGNEISKVSVKQLELLEPLGNGNEEM 473

Query: 510 VFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
            F   +  +  +  + N  H++        +  QA+ F         F      K ++  
Sbjct: 474 RFFIKDLPVSKVTSLSNGKHIRFDLSLPQVKA-QALFFNHGDL----FEQLKDTKMINAV 528

Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590
           G   +N +   +   L + D  
Sbjct: 529 GKFNINVFNNIESVNLIIEDIK 550


>gi|332673191|gb|AEE70008.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori
           83]
          Length = 516

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 249/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L +R       + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVLRKHSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|22297718|ref|NP_680965.1| single-strand-DNA-specific exonuclease [Thermosynechococcus
           elongatus BP-1]
 gi|22293895|dbj|BAC07727.1| single-strand-DNA-specific exonuclease [Thermosynechococcus
           elongatus BP-1]
          Length = 747

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 145/602 (24%), Positives = 247/602 (41%), Gaps = 39/602 (6%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPD---IVARVLVNRNVSID--YAKDFLNPSIRLLMP 70
             W            +   ++   P+   I A++L  R           FL+        
Sbjct: 3   RPWQIYSADPAPPDFIEAVKQLH-PEAGAITAQLLWQRGYRDSLRQVPPFLDWRYYES-A 60

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS-HCSVN-ANMYIP 128
            PL   +   A  R+ QA+   EK++I+GD+D DG  + A++   L         + YIP
Sbjct: 61  SPLEFPEMSAALGRLQQALDQQEKVVIWGDFDTDGVTATAVLWEGLKPLLGTQLVDFYIP 120

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R  D +G +P  +++   +G  LIIT D GST+   +  A   G+DVIV DHH +    
Sbjct: 121 NRHHDSHGLSPHGLQQLQQKGVALIITCDTGSTNGPEIVLARQLGMDVIVTDHHTLDPTP 180

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           + A AL+NP +L       HL   GV +  L  +Y    +       + L +LLDLVA+ 
Sbjct: 181 LGAVALINPRQLPWDHPLRHLSGVGVAYKFLEAVYDRWPEK---TQGYPLENLLDLVAIG 237

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQG--NPGLKALIERVNISSPITAENLGYMIGPSIN 306
            + D V L G  R    +GL    ++    PG+ AL+  V+       E + + + P +N
Sbjct: 238 LIADWVELRGECRYLAQRGLDQLGKRQTLRPGIAALLGHVSKHRAWQRE-ISFTVAPRLN 296

Query: 307 AGGRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           A  R+ G+      LL + D  E   LA ++  LN  R+  +  +   A AK      D+
Sbjct: 297 AVSRVEGDVRPLITLLTTQDRHEARQLAERIATLNTERQRRQKEVTRMAHAKAAQL--DL 354

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKM 424
             + VI++  D W   ++GL+A  + + +GRP+  + +  E G  +GS RS    D+ + 
Sbjct: 355 SASRVILLTDDNWPLSLLGLVANDIVKTYGRPALLLQTNPETGMAVGSARSDGSVDLYEA 414

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP-VFKIDGVL 483
                +  +L   GGH  A G  ++  +   L     +F          TP    ID  +
Sbjct: 415 FHS--QRHLLEGLGGHPYAVGFRLKMAHIPLLAAALNQFLAQQEGTASATPKPLVIDLEV 472

Query: 484 NASAVNIALIDMLESAGPY-GAGNPNPVFAFPNHKLQSIRV----VNLAHLQMTFESQDS 538
               +N  L+  LE   P+    +P P     N +L  +R         ++ M    +  
Sbjct: 473 TLGQLNGQLLKELEVLAPFDSTHHPYPRLLVRNVELTQLRDNNSHGGRRYVSMVLHDRQH 532

Query: 539 E-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
           + T  A  +      +G+    +      +   + +  W+        + +  P E +  
Sbjct: 533 QHTFPAKWW---DHQIGDCPQGA----CDLV--IELEQWQ--SSLSAVIKELRPSETNVI 581

Query: 598 AK 599
            +
Sbjct: 582 QE 583


>gi|308182517|ref|YP_003926644.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           PeCan4]
 gi|308064702|gb|ADO06594.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           PeCan4]
          Length = 516

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 135/510 (26%), Positives = 247/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRVAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH     
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   AYA++NP + D    Q  +C A V F +   I+++L+++           LL L  
Sbjct: 140 KIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLKKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVRKNNIVSLFETLENFDFKVLPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++     + ++ 
Sbjct: 481 FNAERF-------LKAGEKVSAIFSVELDE 503


>gi|217033362|ref|ZP_03438793.1| hypothetical protein HP9810_9g115 [Helicobacter pylori 98-10]
 gi|216944303|gb|EEC23728.1| hypothetical protein HP9810_9g115 [Helicobacter pylori 98-10]
          Length = 516

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 136/516 (26%), Positives = 249/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L +R       + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKCSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|300867576|ref|ZP_07112226.1| single-strand-DNA-specific exonuclease [Oscillatoria sp. PCC 6506]
 gi|300334464|emb|CBN57396.1| single-strand-DNA-specific exonuclease [Oscillatoria sp. PCC 6506]
          Length = 846

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 151/649 (23%), Positives = 263/649 (40%), Gaps = 93/649 (14%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDI----VARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
             W            +   + HA P++     A +L++R + + +    FLNP++     
Sbjct: 6   QNWQIQPPIHPPTWLIEAVKSHA-PELPGHYAASLLMSRGIQNPEQIAGFLNPNLYQ-PA 63

Query: 71  DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126
            P     + + A  R++QA  N+E I I+GD+D DG  S +++   L      +     Y
Sbjct: 64  SPFEFGQEMNLAVERVLQARNNAENIAIWGDFDADGITSTSVLWDGLGQFFSQNEQLTYY 123

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP+R+ + +G N   ++     G  LIIT D GST+   + YA + GID+IV DHH +  
Sbjct: 124 IPNRLTESHGLNNPGIDALAKSGITLIITCDTGSTNLAEIDYARSLGIDIIVTDHHTLPE 183

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E     A++NP  L       HL    V + ++  +Y+ L    + P    L  LL LVA
Sbjct: 184 ERPQVVAIINPRYLPSTHQLFHLSGVAVAYKLIEALYQSLPNVPQRP----LEDLLVLVA 239

Query: 247 LATVCDVVPLIGLNRAYVVKGL----MVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           +  + D+V L G  R    KG+            PG+  L+E    S      ++ + +G
Sbjct: 240 IGLIADLVQLTGDCRYLAQKGIECLGKQITNSTRPGITKLLELCKRSGD-RPTDISFGLG 298

Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           P INA  R  G+++    LL S D +  + LA+  ++ N  R+ ++  + +    K+   
Sbjct: 299 PRINAVSRIQGDASFCVELLTSQDRKRCDQLALSTELANTRRKSIQKDVAKDVNEKLAKL 358

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG------------ 409
             D+   SVIV+   +W  G++GL+A ++ +++GRP+  +S E  G+             
Sbjct: 359 --DLSTTSVIVLADSQWPVGVLGLVAGQVAQEYGRPTILLSTEGAGEMGSGGAGEQGRWG 416

Query: 410 ------------------------------------IGSGRSIEGFDIGKMVSFAVEEGI 433
                                                GS RS+   D+ ++V    +  +
Sbjct: 417 AGEMGSGGDGEQLPITNYQLPITNYQLPITNYPILARGSARSVSQIDLYQLVKS--QAHL 474

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493
           L + GGH  AAGL++   N     D   +     +   + +P  + D ++  S +   L 
Sbjct: 475 LHRFGGHPFAAGLSLPVENISLFTDAINQQLRGQMVNGLPSPTIQADLIVTVSELGRELF 534

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-----SIRVVNLAHLQ-----MTFESQDSET-LQ 542
             L+   P G GNP P     N   +     + + +    +Q          + S+    
Sbjct: 535 QELKLLEPCGMGNPAPKLLIQNCWFENTWHCNQKDLRGNKVQYIKTDFEIRDESSDRAFP 594

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            I +  Y   +                 L  N +   KR ++R++   P
Sbjct: 595 GIWWGHYKDEIP-------TGPCDAIVELDFNTY--KKRYEVRLIALRP 634


>gi|254779039|ref|YP_003057144.1| Single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori
           B38]
 gi|254000950|emb|CAX28894.1| Single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori
           B38]
          Length = 516

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 249/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH + ++
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAIINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEEEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQILRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDE 503


>gi|317062616|ref|ZP_07927101.1| LOW QUALITY PROTEIN: single-stranded-DNA-specific exonuclease recJ
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688292|gb|EFS25127.1| LOW QUALITY PROTEIN: single-stranded-DNA-specific exonuclease recJ
           [Fusobacterium ulcerans ATCC 49185]
          Length = 502

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 140/504 (27%), Positives = 252/504 (50%), Gaps = 18/504 (3%)

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149
              EK+ I+GDYDVDG  +   ++    +  +  + YIP+R+ +GYG +   ++    E 
Sbjct: 3   RKKEKVFIYGDYDVDGITAAVFLVLVFRNIGIEVDYYIPNRMEEGYGLDKKTIDFINKEK 62

Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209
            +L+ITVD G  S + ++YA + GIDVIV DHH+   EE   + L+   +L D     +L
Sbjct: 63  GKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEEDDHLLLLNPKLSDTYEFKYL 122

Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
             AGV   V   +Y+ L+ D       DL   +D+V + TV DVVP+   NR  + +GL 
Sbjct: 123 SGAGVALKVAQGVYQKLKID-----IKDLHQYMDIVMIGTVADVVPMTDENRIIIKQGLR 177

Query: 270 VARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
             ++    GL  L++ +   +  I   ++ Y I P IN+ GR+G S +G+   + +D  E
Sbjct: 178 ALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLGRVGISKMGADFFLKEDDFE 237

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
           +  +  ++   N+ RR +E  + ++A  ++      ++    I +  ++WHPG++G++++
Sbjct: 238 IYNIIEEMKKSNKKRRELEKNIYDEANQEIAK--VGLKNLKCIFLSSEKWHPGVIGVVSS 295

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448
           RL  K+  P   ++F++ G G  S RS++G  I     F      LV+ GGH +AAG  V
Sbjct: 296 RLSVKYNIPVTLVAFKD-GIGKASCRSVKG--ISVFNIFQNMGKKLVRFGGHDLAAGFIV 352

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           +  NF  + + F+    N +         KID   +   ++  + + +ES  PYG  NP+
Sbjct: 353 KSENFEEVKNIFEASIEN-IKIEKEKKSLKIDTEYSIENIDEDMFETMESISPYGLENPH 411

Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P+F   +   ++I+       H       ++ +    +AF + G  + E   +++ ++  
Sbjct: 412 PLFIDRDLSFETIKKFGVDERHFNGIIR-KNGKNYHMVAFDL-GHKINEI--EAKIQKFD 467

Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590
           +  +     +RG +  Q+RV D  
Sbjct: 468 IVYYPEKTLYRGEEIFQIRVKDIK 491


>gi|308061696|gb|ADO03584.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           Cuz20]
          Length = 516

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNIKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L +   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVKATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNILSLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|261839195|gb|ACX98960.1| single-stranded DNA-specific exonuclease [Helicobacter pylori 52]
          Length = 516

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKIALDFLSANNFQDGYFLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|317177159|dbj|BAJ54948.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F16]
          Length = 516

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 246/516 (47%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQIFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ +     +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKKCVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|308184145|ref|YP_003928278.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           SJM180]
 gi|308060065|gb|ADO01961.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           SJM180]
          Length = 516

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 138/510 (27%), Positives = 249/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G  +++A Q+   +   +I+ DHH + ++
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLNND 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           EIP  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSRSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEKEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQVQNLEVIEEKIIKESHQILRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FNADRF-------LKAGEKVSVLFSVELDE 503


>gi|298736715|ref|YP_003729245.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori B8]
 gi|298355909|emb|CBI66781.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori B8]
          Length = 516

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++  ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEVARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LAL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|317179259|dbj|BAJ57047.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F30]
          Length = 516

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A++ + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKTLYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMERKMIQQQVFEEAFKHAMI----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH  ++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHESVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|116751289|ref|YP_847976.1| phosphoesterase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700353|gb|ABK19541.1| phosphoesterase, RecJ domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 553

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 165/564 (29%), Positives = 264/564 (46%), Gaps = 36/564 (6%)

Query: 41  DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           D+V  +L NR         FL+ +++ L    L +   D  A  + + +    +I++ GD
Sbjct: 19  DVVRILLANRG----AGPAFLDGTLKELETC-LAIRGMDAGAELMAEHLAAGTRIVLVGD 73

Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           YD DG  S+A +  FL      N    +P R  +GYG     +    +  A L + +DCG
Sbjct: 74  YDCDGITSLAQVSLFLREIGYGNFETVVPRR-SEGYGIPERAILDHPD--AGLYVAMDCG 130

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEE-IPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           +    A+  A  +G D IVIDHH+V  +   PA  L+NP   +  S     C++G+  L 
Sbjct: 131 TLDRKAVGMARERGADCIVIDHHEVPDQGLAPATVLINPKHSECESTFKEFCSSGLTLLF 190

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278
           L  + R LR     P        L L A+ATV D+VPL+  NR  V  GL  A +   P 
Sbjct: 191 LARLRRALRG---FPKPALGGRFLILAAIATVADMVPLVEGNRILVRSGLNCANQVDYPP 247

Query: 279 LKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           L  L+++  +S   ITA +LGY IGP INA GR+ ++     LL+ DD      LA +L+
Sbjct: 248 LDQLVQKAGLSGKSITAGHLGYYIGPRINAAGRMADARTAYELLVEDDPSAAARLAEQLN 307

Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR- 396
             N  R+  E A++ +   ++  +         +V+    W  GI+G++A+R++++F   
Sbjct: 308 RYNTQRQNQEDAVVGEIRQRLADRKVFG---RTLVMADAGWPAGIIGIVASRVQQEFHYG 364

Query: 397 PSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455
           P    S +E +G   GS RSI GFDI   ++    + ++++ GGH MAAG+T+       
Sbjct: 365 PVVVFSVDEAEGIARGSARSIPGFDIHSALASC--DDVMLRWGGHKMAAGMTIALDRMDE 422

Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515
               F++ A +  PA +  P  ++D  L+   +++ L   L    P+G GNP P FA   
Sbjct: 423 FAHRFEESALHW-PAHVFQPRGRVDAELDTGLISVDLYRELTKLEPHGLGNPTPTFASRG 481

Query: 516 HKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
            ++Q  +       HL++  +    + +  + +R         L    G+ M V   L  
Sbjct: 482 VRVQVKKTFGRDASHLRLQLD----QRIGGVFWRGARHFRSAGLRD--GETMDVVYQLDW 535

Query: 574 NYWRGSKRCQLRVLDASPVEGHHF 597
           + + G    Q  V DA    G  F
Sbjct: 536 DDYAGRPVMQ--VRDA----GRLF 553


>gi|320450564|ref|YP_004202660.1| single-stranded-DNA-specific exonuclease RecJ [Thermus scotoductus
           SA-01]
 gi|320150733|gb|ADW22111.1| single-stranded-DNA-specific exonuclease RecJ [Thermus scotoductus
           SA-01]
          Length = 672

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 153/577 (26%), Positives = 252/577 (43%), Gaps = 55/577 (9%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW  L           + +   +    A    +R V        L PS+  L+P    L 
Sbjct: 6   RWRLLPLPPLKEW-REVMEAFGVGPEAALAYWHRGVRRPED---LKPSL-GLLP----LR 56

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +A   ++ A+   ++I I GDYD DG    A+++R L       + +IP R+ +GYG
Sbjct: 57  GLKEAVELLLWALEGRKRIRIHGDYDADGLTGTAILVRGLRALGAEVHPFIPHRLEEGYG 116

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +P  + + +   A L +TVDCG  ++  L+     G++V+V DHH  +    P   L  
Sbjct: 117 VHPKRIPEHLE-AADLFLTVDCGIANHAELRELVENGVEVLVTDHHTPRDTPPPGVILHP 175

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
               D    + H   AGV FL+L  ++  L            L   DL A+ T+ DV PL
Sbjct: 176 AYTPD---LKEHPTGAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPL 225

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            G NRA V +GL   +     GL+ L E V  +       + + I P INA  R+GE+  
Sbjct: 226 WGWNRALVREGLERLKDSRLLGLRLLAESVGYTGKAVE--VAFRIAPRINAASRLGEAEK 283

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
             RLL+++D +E + L  +L+ LN  R+ +E  ML++   +         +A  IV+   
Sbjct: 284 ALRLLLTEDEEEAKGLVEELNRLNARRQAIEEEMLKRLLPQA------DPEAKAIVLHDP 337

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             HPG++G++A+R+ E   RP F ++      G G+ RS+    I  + +    E +L++
Sbjct: 338 EGHPGVMGIVASRILEATLRPVFIVAQ-----GKGTVRSLP--PISAVEALRSAEDLLLR 390

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN--IALID 494
            GGH  AAG  V+  +F R  +  + FA +    +   P+    G+L    +     L  
Sbjct: 391 YGGHREAAGFAVDEAHFPRFKERVEAFAASFPDPVREVPLV---GLLPP--LTSLPELHQ 445

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPL 553
            L +  P+G GNP P+F       +  R +    HL    +      ++ +A+R+     
Sbjct: 446 ALLALEPFGEGNPEPLFLLQG-SPEEARSMGEGKHLAFRLQG-----VRVVAWRMGER-- 497

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 +    +     L  N W G+   + + LD  
Sbjct: 498 ----AAAMPSELEAAVLLVENRWNGTVSYEAQALDFR 530


>gi|42783656|ref|NP_980903.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC
           10987]
 gi|218905702|ref|YP_002453536.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH820]
 gi|42739585|gb|AAS43511.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC
           10987]
 gi|218537915|gb|ACK90313.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH820]
          Length = 553

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 149/564 (26%), Positives = 236/564 (41%), Gaps = 40/564 (7%)

Query: 18  WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           W  L             L + +   I  ++   L    + + +    FL P       +P
Sbjct: 3   WKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFH-NP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D ++A  RI++AI   E I IFGDYD DG  S  ++ + L     +    +P R  
Sbjct: 62  FLLNDMNRAVDRILKAIQQREIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLR-E 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYG  P  ++  + +   L+ITVD GS+++ A++ A  +GIDVIV DHH+V  E     
Sbjct: 121 DGYGLTPLAVDA-LPQNVSLLITVDNGSSAHPAMKRAKEKGIDVIVTDHHEVLGEHPSCL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A VNP R D+     HLC AGV   ++  ++  L+QD          + ++   + T+ D
Sbjct: 180 AFVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETW----NYIEYATIGTIAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           V+PL G NRA    GL   R   N  L  L         I + N+G++IGP +N+ GRI 
Sbjct: 236 VMPLTGENRAICWFGLYKMRNCPN-KLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N+G+ +L              L  LN  R+ + +   + A   +  Q  +      ++
Sbjct: 295 DPNIGAAILQKATPT--AEDVQLLMNLNNKRKQLTNKQFKLAAEIIEQQSLE---KDSLL 349

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H GI+G+LA+++   + RP+  ++ +  G    S RS  G     + +      
Sbjct: 350 VVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVG----SARSGNGSKFSIIQAIQSCSE 405

Query: 433 ILVKGGGHAMAAG--LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +L K GGH  AAG  +  E  +  +  +  Q+ A     +    P               
Sbjct: 406 LLKKFGGHDAAAGLSIAPEESHIQQFRECMQEAAQQQNTS---QPTSYFISEFPIYNFPN 462

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L D L +  PYG G+P P F   N              H++  F  +          R 
Sbjct: 463 HLFDDLMALEPYGNGHPKPSFRSKNIFACGHSCFGKNKEHVEFFFSKK----------RA 512

Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHL 571
           +    G      +R  RM V    
Sbjct: 513 FAYSHGHLFQNWNRYNRMDVLYTP 536


>gi|210134540|ref|YP_002300979.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori P12]
 gi|210132508|gb|ACJ07499.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori P12]
          Length = 516

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 251/510 (49%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH + ++
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSRSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +I+   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDE 503


>gi|126658353|ref|ZP_01729502.1| RecJ exonuclease [Cyanothece sp. CCY0110]
 gi|126620285|gb|EAZ91005.1| RecJ exonuclease [Cyanothece sp. CCY0110]
          Length = 780

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 146/577 (25%), Positives = 260/577 (45%), Gaps = 45/577 (7%)

Query: 44  ARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT-DCDKAARRIVQAIYNSEKIMIFGDY 101
           A++L +R + + +  K FL+P+    +  P     +   A +R+  A+ N E++ I+GD+
Sbjct: 37  AQLLWHRGIQTPEQLKGFLDPNSYRPL-SPFEFGYEMKLATQRLEVAMNNQERVTIWGDF 95

Query: 102 DVDGAASVALMMRFLSHC---SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D DG  + +++   L       +  N YIP+R  + +G N   + K   EG +LI+T D 
Sbjct: 96  DADGVTATSVLWEGLGQFFDPHLQLNYYIPNRATESHGLNIPGINKLAQEGTKLIVTCDT 155

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           GST+ + + YA + GID+IV DHH +  E     +++NP    +      L    V + +
Sbjct: 156 GSTNLEEINYANSLGIDIIVTDHHTLPDERPDVVSIINPRYFSEDHPLFSLSGVAVAYKL 215

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV----VKGLMVARRQ 274
           +  +Y    +  + P    L +LLDLVA+  + D+V L G  R        K     +  
Sbjct: 216 VEALYLSFPEIPESP----LENLLDLVAIGLIADLVELKGDCRYLAQQGLKKLQQQLKNT 271

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLA 333
             PG+  L+            ++ + IGP INA  R  G+++    LL S D +    LA
Sbjct: 272 TRPGIAHLLNLCKRGGD-RPTDISFGIGPRINAISRIQGDAHFAVELLTSKDEKRCYKLA 330

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
           ++ ++ N  R+ ++  + +  E K+  Q  D+    VIV+E  +W  G++GL+A ++ ++
Sbjct: 331 LETELANTRRKSLQKDIKKDVEKKL--QMLDLSTTQVIVLEDSQWQSGVLGLVAGQIAQE 388

Query: 394 FGRPSFAISFEEDGKG--------IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG 445
           +GRP+  ++  E             GS RS+   D+  +V  A +  +L K GGH  AAG
Sbjct: 389 YGRPTILLTTAETENMSKNEIKLARGSARSVYNIDLYNLV--ASQRDLLYKFGGHPFAAG 446

Query: 446 LTVERVNFGRLCDFFQKFA-HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504
           L++   N     +   +     ++     +   + D V+  S +  +L   L+   PYG 
Sbjct: 447 LSLAVENLSLFRESINRKLRQEVIDVNTLSATIQADLVVTVSQLGQSLFRELKLLEPYGM 506

Query: 505 GNPNPVFAFPNH--------KLQSIRVVNLAHLQMTFESQDSET---LQAIAFRVYGTPL 553
           GNP P     N          ++  +   + +++  F   D         I +       
Sbjct: 507 GNPVPRLLIQNCWFETLGNQNIRDAKNNKIKYIKTKFNIYDHSVDEGFPGIWW----EHY 562

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            E L Q + KR      L  N + G  R ++R+++  
Sbjct: 563 QEELPQGKDKRCDAIVELDYNTY-GKGRYEVRLIEIR 598


>gi|108562768|ref|YP_627084.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           HPAG1]
 gi|107836541|gb|ABF84410.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           HPAG1]
          Length = 516

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 250/510 (49%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH + ++
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               ++V   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIVVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P   T P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCKTEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FNTERF-------LKAGEKVSVIFSVELDE 503


>gi|317181688|dbj|BAJ59472.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F57]
          Length = 516

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSITPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GRI ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRIQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L +   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVDATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|317180757|dbj|BAJ58543.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F32]
          Length = 516

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 134/516 (25%), Positives = 248/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLEKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLNANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAIV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   + WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|208434291|ref|YP_002265957.1| single-stranded-DNA specific exonuclease [Helicobacter pylori G27]
 gi|208432220|gb|ACI27091.1| single-stranded-DNA specific exonuclease [Helicobacter pylori G27]
          Length = 516

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 250/510 (49%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH + ++
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +I+   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFYEKEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   R++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEERIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FNTERF-------LKAGEKVSVLFSVELDE 503


>gi|254672377|emb|CBA05632.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria
           meningitidis alpha275]
          Length = 481

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 148/449 (32%), Positives = 225/449 (50%), Gaps = 14/449 (3%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+  +R V    +   L+  +  L+P    LT+C+ AA R+  A+   EKI+I
Sbjct: 22  GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
             DYD DGA + ++ M  L+      +  +P+R   GYG  P L E    +G  L+ITVD
Sbjct: 78  VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G  S   +  A   G+DVIV DHH + +E +P   +VNPN+         L   GV+F 
Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196

Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
           VL+ +   LR+ N         +L  LLDLVAL TV DVV L   NR  V +GL   R  
Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256

Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              PG++AL E            ++G+ +GP INA GR+ + ++G   L++ D  E + L
Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A +L+ LN  RR +E +ML+ A           Q    +V   D +H G+VG++A+RLK+
Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450
           +F RP+   +  ++G+  GSGRSI    +   +         +++K GGHAMAAGL++  
Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKI 479
            N       F++    +V     +     
Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQNLHH 463


>gi|317012186|gb|ADU82794.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           Lithuania75]
          Length = 516

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 134/510 (26%), Positives = 248/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIII 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH + ++
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAIINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKTLYFLQKESLGAIGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +I+   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEKEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++     + ++ 
Sbjct: 481 FNADRF-------LKAGEKVSAIFSVELDE 503


>gi|298491533|ref|YP_003721710.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae'
           0708]
 gi|298233451|gb|ADI64587.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae'
           0708]
          Length = 767

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 152/607 (25%), Positives = 262/607 (43%), Gaps = 53/607 (8%)

Query: 17  RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
           +W+    ++     +   +++      I    A++L  R +   +    F+N        
Sbjct: 2   QWILAETEQPPKSFIEAVKQYTPLSSGI--FAAQLLWQRGIKDTEELATFVNFQAYQPAS 59

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYI 127
              + T+ + A +R+  A   +EK+ I+GD+D DG  S A++   L    +       YI
Sbjct: 60  LFELETEMNLATQRLKNAGEANEKVAIWGDFDADGITSTAVLWDGLGQFFIQHQQLIYYI 119

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R+ + +G N + ++    +G +LI+T D GST+ D + YA   GIDVIV DHH + SE
Sbjct: 120 PNRLTESHGLNLAGIDNLAKQGCRLIVTCDTGSTNIDEIIYAQQLGIDVIVTDHHTLPSE 179

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
             P  A++NP  L       HL    V + ++  +Y+ L    + P    L  LLDLVA+
Sbjct: 180 RPPVVAIINPRYLPKEHPLFHLSGVAVAYKLVEALYKTLPDVPENP----LTDLLDLVAV 235

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGY 299
             + D+V L G  R     G+   +         +  PG+  L+E     S     ++ +
Sbjct: 236 GLIADLVQLSGDCRYLAQLGIQQLQGDYKKPVAERRRPGVGKLLELC-QKSGDRPTDISF 294

Query: 300 MIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
            +GP INA  R  G++     LL S D +    LA + ++ N  R+ ++  +  Q   KV
Sbjct: 295 GLGPRINAVSRIHGDARFCVELLTSQDIKRCHQLAEETELANTRRKSLQKDVQNQVLQKV 354

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE----EDGKGIGSGR 414
                D+   SVIV+E  +W  G++GL+A ++ ++ GRP+  +S E    E     GS R
Sbjct: 355 SQL--DLSTTSVIVLEDPQWAVGVLGLVAGQVAQETGRPTILLSTESGESEPIFARGSAR 412

Query: 415 SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
           SI   D+ ++V    +  +L + GGH  AAGL++   N     D   +     +  +  T
Sbjct: 413 SINSVDLYQLVKE--QAHLLHRFGGHPFAAGLSLLVENIPLFTDAINQKLRQSLRGIDLT 470

Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ------SIRVVNLA- 527
           P  + D V+  + +   L   L+   P G GNP P     N   +         +     
Sbjct: 471 PTVQADVVVTVADLGKNLFLELKILEPCGMGNPIPKLLIKNCWFENSWHRNQQDLHGKKI 530

Query: 528 -HLQMTF---ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
            +++  F   +     +   I +  Y   L          R      +  N +   K  +
Sbjct: 531 QYIKTEFDIRDDSSKNSFPGIWWGHYKEELPM-------GRCDCIAEIDYNSF--KKGYE 581

Query: 584 LRVLDAS 590
           +R++   
Sbjct: 582 IRLIAVR 588


>gi|261837782|gb|ACX97548.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori 51]
          Length = 516

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 133/516 (25%), Positives = 248/516 (48%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L   +V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAIGFLRQRKVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   + WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P             L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKESPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|188527153|ref|YP_001909840.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           Shi470]
 gi|188143393|gb|ACD47810.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           Shi470]
          Length = 516

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 246/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEATRFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDRECIK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G++++    + ++ 
Sbjct: 481 FNTERF-------LKAGEKVNAIFSVELDE 503


>gi|229198626|ref|ZP_04325328.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           m1293]
 gi|228584908|gb|EEK43024.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           m1293]
          Length = 553

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 147/564 (26%), Positives = 241/564 (42%), Gaps = 40/564 (7%)

Query: 18  WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           W  L             L + +   I  ++   L    + + +    FL P       DP
Sbjct: 3   WKQLDIPFENHPHCKNMLYLAKHVNIHPLLGYHLFLHGIQTEEQLWSFLYPDPSQFH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D   A  RI+++I   E I +FGDYD DG  S  ++ + L     +    +P R  
Sbjct: 62  FLLNDMKHAVERILKSIQQKELIYVFGDYDCDGITSSTILKQALEKLGAHVMTRLPLR-E 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG +P  ++  + E   L+ITVD GS+++ A+Q A  +GIDVIV DHH+V  E     
Sbjct: 121 EGYGLSPYAVD-CLPENVALLITVDNGSSAHSAIQRAKEKGIDVIVTDHHEVLGEHPTCL 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A +NP R D+     +LC AGV   ++  ++  L+QD          + ++   + T+ D
Sbjct: 180 AFINPKRKDNTYPYTNLCGAGVALKLIQALFMTLKQDWVKETW----NYIEYATIGTIAD 235

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           V+PL G NR     GL   R   NP +K  +E++ +   I +  +G++IGP +N+ GRI 
Sbjct: 236 VMPLTGENRVLCWYGLYKMRNCPNPLIKLFLEQLQLK-HIDSTTIGFLIGPMLNSCGRIS 294

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N+G  +L   +          L  LN  R+ + +   + A   +  Q  +      ++
Sbjct: 295 DPNIGGAILQKVEPTT--EDIQLLMNLNNKRKQLTNEQFQMASEIIQQQSLE---KDSLL 349

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           V    +H GI+G+LA+++   + +P+  ++ +  G    S RS  G     + +      
Sbjct: 350 VVQGNFHKGIIGILASKISSHYKKPTIVLTQDGVG----SARSGNGSKFSIIQAIQSCSE 405

Query: 433 ILVKGGGHAMAAG--LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
           +L K GGHA AAG  +  E  +  R     Q+ A     +    PV      L       
Sbjct: 406 LLKKFGGHAAAAGLSIVPEESHIQRFRGHIQEVAKQQTNS---KPVSYFMSELPIYNFPS 462

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548
            L D L +  P+G G+P P F   N              H++  F  +          + 
Sbjct: 463 HLFDDLMALEPFGNGHPKPAFRSQNVFACGHSYFGKNNEHVEFFFSKK----------KA 512

Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHL 571
           Y    G      +R  RM +    
Sbjct: 513 YAYSHGHLFQNWNRYNRMDILYTP 536


>gi|317008987|gb|ADU79567.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           India7]
          Length = 516

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 136/516 (26%), Positives = 253/516 (49%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A++ + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH +   
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHG 139

Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E+P  YA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    +     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREIFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   ++P   T P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCKTEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIETGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++ V   + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSVLFSVELDEYSNEPK 509


>gi|293400750|ref|ZP_06644895.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305776|gb|EFE47020.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 534

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 240/565 (42%), Gaps = 49/565 (8%)

Query: 28  NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL-NPSIRLLMPDPLILTDCDKAARRIV 86
            R   I     +P + A+VL  ++++ D     L  P +     DP       + A R+ 
Sbjct: 9   QRMEDIQCTFGLPSLCAKVLAAKDLANDEIAVLLQEPKLS----DPFCANGVKEVADRLY 64

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
           QA    EK+++ GDYD DG  + A+M+  L    ++   YIP+R  +GYG + + +    
Sbjct: 65  QAKQKKEKVLVCGDYDADGICATAIMVDALRSYGIDCGFYIPNRFSEGYGLHENTVGLAK 124

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
            +G  L+ITVD G  +  AL +A   GIDVIV DHH +  E      LV+P  + +    
Sbjct: 125 QKGYALLITVDNGVKAKTALSFAHTMGIDVIVTDHHSMDEEVT-CLQLVHPTLMGE--PF 181

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
             L  AGV  ++   +    ++             + L  +A + D++PL    RA V  
Sbjct: 182 TTLSGAGVALMLSRALIGEKKEH------------VVLACVAAIADIMPLHKETRAIVKL 229

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES---NLGSRLLIS 323
           G+   ++   P ++ L +            + Y I P +N  GR+ +    N   + L+S
Sbjct: 230 GISYLKQGICPPIRFLAKERYPKWDEML--IAYQIVPKLNVTGRLADMVNVNNTVKYLLS 287

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
              +E++ +A +++ LN+ R++M   ML +A+  V  +          ++  D +H G+ 
Sbjct: 288 TSMEEIQHVAKQINDLNEKRKVMSDDMLLKAKTLVHEEY------RFQLLFDDSFHEGMA 341

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
           GL+A +L E+   P    +        GS RS    D+            LV  GGH  A
Sbjct: 342 GLVAGKLAEELQMPVMV-AARNQDHFKGSIRSQGLLDLTTFFDECKP--SLVSYGGHKAA 398

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGPY 502
           AG+         + D+       +V    +      D + +  S + IA ++ L+   P+
Sbjct: 399 AGIGFSYDKKQVIQDYVNSRMEQVVFDNDS----SYDVIAVERSEITIAEVESLQLLAPF 454

Query: 503 GAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSR 561
           G G   P+F     K+Q  R +   AH +          L+A+ F+            + 
Sbjct: 455 GEGFEEPLFLLEKQKVQDCRSLSKGAHTKWILSDD----LEAMQFQSRDWEF-----YNP 505

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRV 586
              ++  G+L +N + G K+  + V
Sbjct: 506 EATLNFIGNLRINSFMGRKKVNIYV 530


>gi|315586336|gb|ADU40717.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori
           35A]
          Length = 516

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 32/516 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A++ + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +D YG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDSYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           F               G+++     + ++ +    +
Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509


>gi|297379565|gb|ADI34452.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori
           v225d]
          Length = 516

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 137/510 (26%), Positives = 248/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++A ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL LV 
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLVG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++ Q+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNIKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GSGRS    D+  + 
Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+V + N   L +  + F   I+P     P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E+  PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G++++    + ++ 
Sbjct: 481 FNTERF-------LKAGEKVNAIFSVELDE 503


>gi|15644976|ref|NP_207146.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter
           pylori 26695]
 gi|2313437|gb|AAD07405.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter
           pylori 26695]
          Length = 516

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 139/510 (27%), Positives = 248/510 (48%), Gaps = 32/510 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DHH     
Sbjct: 83  PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305
           +AT+ D++PL   NR  V K L   +++    +  L    V     + A ++ + I P I
Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+ ++ +    L +++SQ+   L  +L   N  R++++  + E+A    +      
Sbjct: 255 NSAGRMQDAKMALDFLSANNSQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
               +IV   D WH G++G++A++L E   +PS   +F+E G   GS RS    D+  + 
Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           +      +L+  GGH  A GL+VE+ N   L +  + F   ++P   T P       L  
Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVEKNNIISLFETLENFDFKVLPFCKTEPPLT----LKL 421

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++  L++++E   PYG  NP P+F   N ++   +++  +H  + F+ ++    +AI 
Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
           F               G+++ V   + ++ 
Sbjct: 481 FSAERF-------LKAGEKVSVLFSVELDE 503


>gi|170078344|ref|YP_001734982.1| single-strand-DNA-specific exonuclease [Synechococcus sp. PCC 7002]
 gi|169886013|gb|ACA99726.1| single-strand-DNA-specific exonuclease [Synechococcus sp. PCC 7002]
          Length = 761

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 139/582 (23%), Positives = 247/582 (42%), Gaps = 41/582 (7%)

Query: 17  RWVSLLGQEGI----NRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71
            W  L   E       R   +T        +A++L  R  + +     FLNP        
Sbjct: 2   NWQVLATPEVPDSFIRRVEILTDGKG-DRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSA 60

Query: 72  PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIP 128
                +  +A  R++QA    EK+ I+GD+D DG  + +++   L            YIP
Sbjct: 61  FAFGQEMKRAIHRLIQAKERGEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIP 120

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           +R+ + +G N   +++    GA LII  D GST+   + +A +  ID+I+ DHH +    
Sbjct: 121 NRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAHAKSLDIDLIITDHHTLPETR 180

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
               +++NP    +     HL    V + ++  +   L      P    +  LLDLVA+ 
Sbjct: 181 PDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPD----PTRPPVTDLLDLVAIG 236

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNP-----GLKALIERVNISSPITAENLGYMIGP 303
            + D+V L G  R     G+   ++Q NP          +      +     ++ + IGP
Sbjct: 237 LIADLVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGP 296

Query: 304 SINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
            INA  R  G+++    LL S +      LA + ++ N  R+ ++  +++QA+A++  + 
Sbjct: 297 RINAVSRIYGDASFCVELLTSRERGRCGYLAQQTELANARRKEIQQKVVQQAKAQI--ET 354

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDI 421
            D+   SV+V+   +W  G++GL+A+++ + FGRP+  +++  E     GS RS  G D+
Sbjct: 355 LDLSTTSVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQDLWKGSARSAHGIDL 414

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA--LITTPVFKI 479
             +V    +  +L + GGH  AAGL+V   N         + A     +          I
Sbjct: 415 YDLVQA--QGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITI 472

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--KLQSIRVVNLA------HLQM 531
           D V+  + +  +L   LE   P+G GNP P     +    +     +         + + 
Sbjct: 473 DLVVAIADLGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKT 532

Query: 532 TFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
            FE  D ++ +  I +       G     ++G  + V   L 
Sbjct: 533 NFELWDETDQISGIWWG------GHPDDLTQGAGLDVVVELD 568


>gi|325282947|ref|YP_004255488.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           proteolyticus MRP]
 gi|324314756|gb|ADY25871.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           proteolyticus MRP]
          Length = 695

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 156/578 (26%), Positives = 257/578 (44%), Gaps = 48/578 (8%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW              + +++ +    A+ +  R +  +     L+P  R L P+P    
Sbjct: 6   RWQLARPAPLPAL-RDLMERYGLSAPAAQWVYGRGLRPE----LLSPEHR-LTPNP---- 55

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +AARR+VQAI   ++I I GDYD DG  + A ++  L     + + +IP R+ +GYG
Sbjct: 56  GLREAARRLVQAIRAGKRIRIHGDYDADGVTATATLVLGLQALDADVHGFIPHRLEEGYG 115

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +PS +++       L++TVDCG ++ + +     +G DVIV DHH           +  
Sbjct: 116 IHPSKLDEHAQ-SCDLLVTVDCGVSNREEVAGLLERGTDVIVTDHHAPPPTFPDCLVVHP 174

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
               +      +L  AGV + +L  +++ L      P       L  L  L T+ DV PL
Sbjct: 175 ELTANYDPALHNLTGAGVAYHLLWAVHQELGLPEPRP-------LSALATLGTIADVAPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            G NRA V  GL         GL+AL+E   + +  +A ++ +++ P INA GR+GE++ 
Sbjct: 228 TGENRALVGVGLAALPGTDIVGLRALLELSGV-AQPSARDVAFVLAPRINAAGRMGEADR 286

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL +   Q    LA  L+V N+ RR ++  M  +A   V            ++V   
Sbjct: 287 ALELLTTSSPQRAGALAQYLEVRNEERRELQDRMYREALDLV------DPGERALLVTRP 340

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            WHPG++G++A++L E+F RP + ++      G GS RS  G  I  +        +L++
Sbjct: 341 DWHPGVMGIVASKLLEQFYRPVYIVAQ-----GKGSVRSTPG--ISAVGGLRYSHDLLLR 393

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  AAG ++E  N  RL D  Q +A       +  P   +D  L A+   + L   L
Sbjct: 394 YGGHPGAAGFSLEEANLPRLRDRLQDYAAQFP---VPVPHVTLDAPLPATYATLDLWQEL 450

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
           ++  PYG G   P++   +  L   R+V      + F++     L+ I FR      G  
Sbjct: 451 QAFEPYGEGLRPPLWHLRS-PLSGTRLVGRNRDCLQFQAAG---LRGIKFREQDAATGPR 506

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                     +   L  + +RG    +    +  P + 
Sbjct: 507 ---------DLAVRLRRSEFRGRVSAEWEAEELRPPQA 535


>gi|229021094|ref|ZP_04177750.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH1273]
 gi|229022324|ref|ZP_04178863.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH1272]
 gi|228738924|gb|EEL89381.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH1272]
 gi|228740196|gb|EEL90537.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus
           AH1273]
          Length = 553

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 143/513 (27%), Positives = 232/513 (45%), Gaps = 25/513 (4%)

Query: 29  RALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87
           R L + ++  +  ++   L    + S +  + F+ P +     +P +L D   A  RI++
Sbjct: 18  RMLYLARQANLDPLLGYHLFLHGIQSEEQVQSFIYPDVSQFH-NPFLLNDMKHAVERILK 76

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147
           +I   E + IFGDYD DG  S  ++ + L     +    +P R  +GYG +P  ++  + 
Sbjct: 77  SIQQKETVYIFGDYDCDGITSSTILKQALQKLGAHVISRLPLR-EEGYGLSPHAVD-SLP 134

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
           E   L+ITVD GS+S+ A++ A  +GIDVIV DHH+V        A VNP R D+     
Sbjct: 135 ENVALLITVDNGSSSHPAMKRAKEKGIDVIVTDHHEVLGAHPDCLAFVNPKRKDNTYPYQ 194

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
           HLC  GV   ++  ++  L+QD          + ++   + T+ DV+PL G NRA    G
Sbjct: 195 HLCGVGVALKLIQALFMTLKQDWIKETW----NYIEYATIGTIADVMPLTGENRAICWYG 250

Query: 268 LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
           L   R   N  LK   E++ +   I + ++G++IGP +N+ GRI + N+GS +L   +  
Sbjct: 251 LYKMRTCPNSLLKLFREQLKLK-YIDSTSIGFLIGPMLNSCGRISDPNIGSDILQKAEPT 309

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
                   L  LN  R+ + +   E A   +  Q         ++V    +H GI+G+LA
Sbjct: 310 I--EDIQHLMNLNNQRKQLTTKQFELAFDIIQNQSLAQD---TLLVVQGDFHKGIIGILA 364

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG-- 445
           +++   + +P+   + +  G    S RS  G     + +      +L K GGHA AAG  
Sbjct: 365 SKISNHYKKPTIVFTNDGIG----SARSGNGSKFSIVQAIQSCGELLKKFGGHAAAAGLS 420

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           +  E  N  R  +  Q+ A   +      PV               L D L +  P+G G
Sbjct: 421 IVPEEKNIQRFRERIQEAAKQQI---HFKPVSYFISEFPIYNFPNHLFDDLMALEPFGNG 477

Query: 506 NPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ 536
           +P P F   N              H+Q  F  +
Sbjct: 478 HPKPSFRSQNIFSCGHSYFGKDKEHVQFFFSKK 510


>gi|149002291|ref|ZP_01827233.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759606|gb|EDK66597.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           pneumoniae SP14-BS69]
          Length = 450

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 227/457 (49%), Gaps = 25/457 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + W   L  E       I +K  +   VAR+L  R +   +  K FL PS+  L  D  +
Sbjct: 10  YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QAI   E I+++GDYD DG  S +++   L        +Y+P+R  DG
Sbjct: 68  LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127

Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +      AYA
Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +V+P   D      +L   GV F +   +   ++           + LLDLVA+ T+ D+
Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312
           V L   NR  V  GL +       GL+ +++   I ++ +T E +G+ I P +NA GR+ 
Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           + N    LL   D +E   +A+ +   N+ R+ +  ++ E+A+  V        +  V V
Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432
           +  + W+PG++G++A RL E+ G+    ++  EDG+  GS RS+E  DI    +      
Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
           + +  GGHA AAG+T+E      L    + +      
Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGS 444


>gi|186684176|ref|YP_001867372.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme
           PCC 73102]
 gi|186466628|gb|ACC82429.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme
           PCC 73102]
          Length = 816

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 150/620 (24%), Positives = 258/620 (41%), Gaps = 62/620 (10%)

Query: 16  FRWVSLLGQEGINR-ALAITQKHAIPDIV--ARVLVNRNV-SIDYAKDFLNPSIRLLMP- 70
            +W     ++ +     A+ Q   +   +  A++L  R +        F+N   +   P 
Sbjct: 5   QQWTITATEQPLEWFIQAVKQHTPLSSGIYAAQLLWQRGIKDNQQLTAFIN--YKDYQPA 62

Query: 71  DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126
            P     +   A  R+ QA    EKI I+GD+D DG  + +++   L      +     Y
Sbjct: 63  SPFEFGQEMQLAIARLQQAYNAKEKIAIWGDFDADGITATSVLWDGLGQFFKQNTQLIYY 122

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP+R+ + +G N   ++    +G +LI+T D GST+ + + YA   GIDVIV DHH + +
Sbjct: 123 IPNRLKESHGLNNQGIDNLAKQGCKLIVTCDTGSTNIEEIIYAKQLGIDVIVTDHHTLPT 182

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E  P  A++NP          +L    V + ++  +Y+ L    K P    L  LLDLVA
Sbjct: 183 ERPPVAAIINPRYFSREHQLFNLSGVAVAYKLVEALYQSLPNVAKHP----LEDLLDLVA 238

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARR--------QGNPGLKALIERVNISSPITAENLG 298
           +  + D+V L G  R     G+   +         +  PG+  L+E     S     ++ 
Sbjct: 239 VGLIADLVQLSGDCRYLAQLGIQRLQEDFKQPPTARRRPGVGRLLELC-QKSGDRPTDIS 297

Query: 299 YMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           + +GP INA  R  G+++    LL S D +    LA   ++ N  R+ ++  +  Q   K
Sbjct: 298 FGLGPRINAVSRIQGDASFCVELLTSRDVKRCNELAEVTELANTRRKSLQKDVQAQVAQK 357

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-------- 409
           +     D+   SVIV+E  +W  G++GL+A ++ ++ GRP+  +S E  G+         
Sbjct: 358 LTQL--DLSTTSVIVLEDAQWPAGVLGLVAGQVAQETGRPTILLSTELAGEEDFALTPYS 415

Query: 410 -------IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
                   GS RS+   D+ ++V    +  +L + GGH  AAGL++   N         +
Sbjct: 416 LLPAPLARGSARSVNSVDLYQLVK--DQAHLLHRFGGHPFAAGLSLLVENIPLFTAAINQ 473

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ--- 519
                + +   TP  + D  +  + +   L   L+   P G GNP P     N   +   
Sbjct: 474 QLRQSLGSTTLTPTVQADLTVTVADLGKELFLELKVLEPCGMGNPVPKLLIQNCWFENAW 533

Query: 520 ---SIRVVNLA--HLQ--MTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
                        +++           +    AF   G   G +  +    R      L 
Sbjct: 534 HRNQQDWQGKKVQYIKTEFDIRDDSGRS----AF--PGLWWGHYKDELPIGRCDCIAELD 587

Query: 573 VNYWRGSKRCQLRVLDASPV 592
            N +   KR ++R++   P 
Sbjct: 588 YNTF--KKRYEIRLIAVRPS 605


>gi|78485592|ref|YP_391517.1| phosphoesterase, RecJ-like [Thiomicrospira crunogena XCL-2]
 gi|78363878|gb|ABB41843.1| exonuclease RecJ [Thiomicrospira crunogena XCL-2]
          Length = 597

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 151/584 (25%), Positives = 247/584 (42%), Gaps = 32/584 (5%)

Query: 28  NRALAITQKHAIPDIVARVLVNR----NVSIDYAKDFLN----PSIRLLMPDPLILTDCD 79
           ++         + ++ A+++ +R    + S D   + L     P ++ L   P  L +  
Sbjct: 17  DKIHQAALSLGLSELQAKLVASRLTEADFSHDNMPEELQKIVFPKLQYLQH-PEQLKNAK 75

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSV---NANMYIPDRIVDGY 135
           +AA  I  A+ +  KI++  DYD DG  S  +  R L  +  V        I +R  +GY
Sbjct: 76  QAAELIADAVESDGKIVLATDYDTDGVTSAWVATRALIDYFGVSPERIEHMIGER-KEGY 134

Query: 136 GPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           G    ++ +   I     L+I+ D GS+    ++   + GI V V DHHQ+ +E  P  A
Sbjct: 135 GITEEVVNRILAIKGSIDLVISADQGSSDEPRIKRLADAGIKVCVTDHHQMTTEGAPPSA 194

Query: 194 LV--NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATV 250
               NP +         +    V+FLV+      L +   +P     L  L   +AL TV
Sbjct: 195 ACTVNPQQAGCDYD-KTVAGCFVIFLVMGQTRTELIRRQVIPETTPSLKDLTQNIALGTV 253

Query: 251 CDVVPLIG-LNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGPSINAG 308
            D V L    NRA V  GL    +  +P  +AL +   N   P  AE LG+ +   INA 
Sbjct: 254 ADSVSLKSVNNRAIVQAGLAAINQFSHPAWQALQKMNDNQGQPFNAEYLGFQVATRINAA 313

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
            R+ +     + L +   ++   L  +LD  N +RR  +  ML+QA         + +  
Sbjct: 314 SRVSDVTTAFKFLNASSLEQATPLLAQLDQDNLDRRSQQEGMLKQARETAEALYHENKFT 373

Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-SIEGFDIGKMVSF 427
             I +     + GI G++A+R+ E++G P+ A++  EDG   GSGR  +   D+ +    
Sbjct: 374 LSIRM---TGNAGIQGIIASRIGEQYGVPTIAMTDLEDGYLAGSGRGIVSNIDLREAFQT 430

Query: 428 A--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
                 G+    GGH  AAG  +    F      F++     +   +  P  + DG L  
Sbjct: 431 MAERHPGLFKSMGGHKGAAGCMIPIEKFDIFSTLFEETIQEQLNHTVPIPTIETDGRLTG 490

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQA 543
             +  +LI  L    PYG   P P+F+    ++Q +R V     HL     S D + + A
Sbjct: 491 RQLTPSLIQELNLLEPYGREWPKPLFSG-VFEIQDLRPVGQTKTHLSFKLRSDDRQIISA 549

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           I F    T        S G+++       +N + G    QL+V+
Sbjct: 550 IFFNAKPTAEAP-DGFSIGEKVECAYQPSLNTFYGKTSLQLKVV 592


>gi|322382946|ref|ZP_08056778.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153066|gb|EFX45524.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 396

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 129/392 (32%), Positives = 197/392 (50%), Gaps = 18/392 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72
           S  RW    G    +    + + H +  + AR+L  R ++  + A+ FL+ S +    DP
Sbjct: 4   SKARWQ--TGCAESSVVQKLAEAHHLDTLTARLLALRGITTPEAAESFLH-SRQDGFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D  KA  RI  A+ + E I I+GDYD DG  S +L+M  L       + YIP R+ 
Sbjct: 61  FLMKDMKKAVDRIRLAVEHKEFIRIYGDYDADGVTSTSLVMFLLRKIKARFDYYIPHRVR 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYG N   +EK   +G  LIITVD G ++ + + Y    G+DVIV DHH+         
Sbjct: 121 EGYGLNRQAVEKAAEDGVDLIITVDTGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           ALVNP + D      HL   GV F +   +   + +            LL+LVA+ TV D
Sbjct: 181 ALVNPKQADCPYPFKHLAGVGVAFKLAHALLDRVPE-----------ELLELVAIGTVAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311
           ++P  G NR  V  GL   ++   PG++AL++   I    +T+ +LG+ +GP +NA GR+
Sbjct: 230 LMPFHGENRTIVKMGLKRMQQSAFPGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
           G +N    LLI+ DS     LA  LD LNQ R+ +   + E+A A    Q         +
Sbjct: 290 GSANNSVELLITGDSGRANELAQLLDELNQERQRIVREINEEALAIAAEQVQKGNT--FL 347

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           VV    W+ G++G++A+++ E F +    I  
Sbjct: 348 VVAKPDWNEGVIGIVASKIVETFHKTDHCIQH 379


>gi|113474473|ref|YP_720534.1| exonuclease RecJ [Trichodesmium erythraeum IMS101]
 gi|110165521|gb|ABG50061.1| exonuclease RecJ [Trichodesmium erythraeum IMS101]
          Length = 810

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 147/592 (24%), Positives = 258/592 (43%), Gaps = 50/592 (8%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDI----VARVLVNRNV-SIDYAKDFLNPSIRLLMP 70
             W  L         +   + + +P++    +A++L  R + + +    FL+P       
Sbjct: 6   KYWQILSSNHPPYSFIESFKSY-VPELSGKYLAQLLWQRGIKNPEDIASFLDPKQYKPAS 64

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYI 127
                ++ + A  RI+ A  N EK+ I+GD+D DG  S +++   L       +    YI
Sbjct: 65  FSAFGSEINNAVARIISARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQLTYYI 124

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  + +G N S +E+   +   LIIT D GST+   ++YA + GID+IV DHH + ++
Sbjct: 125 PNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNIAEIEYANSLGIDIIVTDHHTIPTK 184

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
             P +A++NP          +L   GV + ++  +Y    +  ++P    L  LLDLVA+
Sbjct: 185 RPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLP----LTELLDLVAI 240

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR----RQGNPGLKALIERVNISSPITAENLGYMIGP 303
             + D+V L    R     G+   R    +   PG+  L+E     +     ++ + IGP
Sbjct: 241 GLIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELC-QKTGDRPTDISFGIGP 299

Query: 304 SINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
            INA  R +GE++    LL S + Q  + LA++ ++ N  R+ +E  + +    K+    
Sbjct: 300 RINAVSRIMGEASFCVELLTSRNPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKL- 358

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------IGSGR 414
            D+    VIV+   +W  G++GL+A ++ +K+GRP+   S E +            GS R
Sbjct: 359 -DLSTTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEETEVTKTSEKKLLARGSAR 417

Query: 415 SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
           S+   ++ ++V    +  +L   GGH  AAGL++   N     D   +    I+      
Sbjct: 418 SVGNINLYELVK--NQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQ 475

Query: 475 -PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA 527
             V ++D ++  S +   L   L+   P G GNP P     N     I       +    
Sbjct: 476 TSVIEVDLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNK 535

Query: 528 --HLQMTFESQDS---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
             +++  FE  D    +    I +  Y   + E +             L  N
Sbjct: 536 VRYIKTNFEICDKSIDKGFPGIWWGHYKEEIPEEI-------CDAVLELDFN 580


>gi|67921137|ref|ZP_00514656.1| RecJ exonuclease [Crocosphaera watsonii WH 8501]
 gi|67857254|gb|EAM52494.1| RecJ exonuclease [Crocosphaera watsonii WH 8501]
          Length = 781

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 151/618 (24%), Positives = 271/618 (43%), Gaps = 48/618 (7%)

Query: 13  ISGFRWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68
           I+ ++W  L      +  + I  K+   +     A++L  R + + +  + FL+      
Sbjct: 3   INRYQWQVLPIISLPSWLVDIVNKYCANSQGTYAAQLLWQRGIKTKEKLQGFLDSDYYQP 62

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANM 125
           +       +   A +R+  A+ N +K+ I+GD+D DG  + +++   L       +  N 
Sbjct: 63  LSPWEFGYEMKLAIKRLKFAMDNQQKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNY 122

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           YIP+R  + +G N   ++K   EG  LI+T D GST+ + + YA + GID+I+ DHH + 
Sbjct: 123 YIPNRSKESHGLNIPGIKKLAEEGTILIVTCDTGSTNLEEINYANSLGIDIIITDHHTLP 182

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
            E     +++NP    +      L    V + ++  +Y    +  K P    L +LLDLV
Sbjct: 183 DERPNVISIINPRYFSEEHPLFSLSGVAVAYKLVEALYLSFPETPKSP----LENLLDLV 238

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVAR----RQGNPGLKALIERVNISSPITAENLGYMI 301
           A+  + D+V L G  R    +GL   +        PG+  L++    S      ++ + I
Sbjct: 239 AIGLIADLVELKGDCRYLAQQGLKKLQQQLTNTTRPGVAFLLKLCKRSGD-RPTDISFGI 297

Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           GP INA  R  G+++    LL S D +    LA++ ++ N  R+ ++  + +  E K+  
Sbjct: 298 GPRINAISRIQGDAHFAVELLTSKDDKLCNKLALETELANTRRKSLQKDIKKDVEKKL-- 355

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------IGS 412
           Q  D+    VIV+E  +W  G++GL+A ++ +++GRP+  ++  E             GS
Sbjct: 356 QALDLSTTQVIVLEDPQWQSGVLGLVAGQIAQEYGRPTILLTTAETEDMSANDIKLARGS 415

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD-FFQKFAHNIVPAL 471
            RS+   D+ K+V  A ++ +L + GGH  AAGL++   N     +   Q+    I+   
Sbjct: 416 ARSVHNIDLYKLV--ASQQYLLHRFGGHPFAAGLSLPVENLSLFRESINQQLRQEIIDIN 473

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRV 523
             +     D V+  S +   L   L+   PYG GNP P     N          ++  + 
Sbjct: 474 TLSSTITADLVVTVSQLGQTLFRELKLLEPYGMGNPIPRLLIQNCWFEGLGNRNIKDAKN 533

Query: 524 VNLAHLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW-RGS 579
             + +++  F   D         I +        E L Q + K       L  N + +G 
Sbjct: 534 NKIQYIKTKFNIYDRSVEQGFPGIWW----EHYQEELPQGQDKLCDAIVELDYNTYGQGR 589

Query: 580 KRCQLR-VLD-ASPVEGH 595
              +L  + +     E  
Sbjct: 590 YEVRLIELRESLKVAENQ 607


>gi|289549277|ref|YP_003474265.1| phosphoesterase RecJ domain protein [Thermocrinis albus DSM 14484]
 gi|289182894|gb|ADC90138.1| phosphoesterase RecJ domain protein [Thermocrinis albus DSM 14484]
          Length = 545

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 147/582 (25%), Positives = 256/582 (43%), Gaps = 60/582 (10%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
             +SG  W  L  +   +    + + +    +VA+V+ NR V+ +     L+  +R ++P
Sbjct: 2   KGLSGKEWNLLSERISPD--PEMIRSYG--YVVAQVMANRGVTAEA----LDLKLRKILP 53

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
            P ++ + D A  RI +AI   E I+I+GDYDVDG  +  L+ RFL +      + +P+R
Sbjct: 54  -PHLIPNMDIAVERIAKAIKKRENILIYGDYDVDGVTASVLLYRFLRYAGAKVQVVLPNR 112

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
              GYG N  L++K+ +    L+ITVD G+T+ + L     +  D IV+DHH    E  P
Sbjct: 113 -SSGYGLNIDLVKKW-DSWVDLLITVDNGTTALEEL---RGRSKDTIVLDHHNPHGELPP 167

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A  +      +       + + G+ F ++  + R L+ D      +D    L LVA+ T+
Sbjct: 168 AILVNPKIDQNTPKDLREISSVGLAFYLITCLQRELQLD------YDTRDELPLVAIGTL 221

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQ-----GNPGLKALIERVNISSPITAENLGYMIGPSI 305
            D + L  LNR  V  G+              GL+ LIE+  I  PIT+ ++ +++ P +
Sbjct: 222 GDFMNLNTLNRILVYNGIRALNYYLQKGVKLLGLRLLIEKAGIPLPITSRDISFLVVPRL 281

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           N+ GR+       RLL  +    ++ L ++++  +Q R+ +    +  AE ++  Q    
Sbjct: 282 NSPGRVANPYYSFRLLSENRESIVKQLVLQIENFHQARKKLTEIAVGLAEEQLQKQ---- 337

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           +  S+ +++ +    G+ G++A +L  +  +P   +S  +      S RS+EG DI    
Sbjct: 338 KDVSIPLLKLEGRFKGVGGIVAGQLVSRIQKPVVVVSVND-NLSSASARSVEGIDIH--S 394

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
           + A    + VK GGH+ A G T+       L +  +      +P   +     ID  L  
Sbjct: 395 TLAPLAHLFVKWGGHSQAMGFTIHTHLLDVLEENLRY-----MPLPDSELRLDIDMELPI 449

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
              + +L++ L    P+G G P P F      LQ   +                 +    
Sbjct: 450 RRCDESLVEALRRMEPFGEGFPFPTFLSEPLTLQISEI------------SSGRLV---- 493

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK--RCQLR 585
             +Y    G  L+       H+ G +    WRG       LR
Sbjct: 494 --MYHPDTGTRLVSYDR---HLIGKISQREWRGRVVYSPSLR 530


>gi|218296347|ref|ZP_03497090.1| single-stranded-DNA-specific exonuclease RecJ [Thermus aquaticus
           Y51MC23]
 gi|218243141|gb|EED09672.1| single-stranded-DNA-specific exonuclease RecJ [Thermus aquaticus
           Y51MC23]
          Length = 665

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 148/575 (25%), Positives = 243/575 (42%), Gaps = 53/575 (9%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW  L           + +   +    A  L +R V      D     + L         
Sbjct: 5   RWRLLSLPPLPEW-REVMEAFGVGPEAALALWHRGVRRKEDLDPPLRLLPL--------K 55

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             ++A   +++AI   ++I + GDYD DG    A+++R L+      + +IP R+ +GYG
Sbjct: 56  GLEEAVDLLLKAIREGKRIRVHGDYDADGLTGTAILVRGLTALGARVHPFIPHRLEEGYG 115

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                + + +   A++ +TVDCG  ++  L+     G++V+V DHH  +    P   L  
Sbjct: 116 VLMERVPEHLE-AAEVFLTVDCGIANHAELKELVENGVEVLVTDHHTPREAPPPGVVLHP 174

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
                      H   AGV FL+L  ++  L            L   DL AL T+ DV PL
Sbjct: 175 AYTPG---LGEHPTGAGVAFLLLFALHERLGL-------PPPLEYADLAALGTIADVAPL 224

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            G NRA   +GL         GL+ L + V  +    A+ + + I P INA  R+GE+  
Sbjct: 225 WGWNRALAKEGLARMATSAWVGLRLLAQAVGYTG--QADEVAFRIAPRINAASRLGEAEK 282

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
             +LL++D  +E   L  +L+ LN  R+ +E AML +   +V        +   IV+  +
Sbjct: 283 ALKLLLTDSEEEARALVEELNRLNARRQTIEEAMLRRLLPQV------DPEERAIVLRDE 336

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             HPG++G++A+R+ E   RP F ++        G G       I  + +    E +L +
Sbjct: 337 EGHPGVMGIVASRILEATLRPVFLVAQ-------GKGTVRSLAPISAVEALKSVEDLLKR 389

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  AAG  ++   F  L     ++A       +  P+      L A  +   +   L
Sbjct: 390 FGGHREAAGFAMDEALFPELKRRLLEYAARFPEPELEVPLL---APLPAPGLLAQVYREL 446

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555
           E   PYGAGNP P+F       +  R +    HL    +      ++ +A+R+ G     
Sbjct: 447 ELLKPYGAGNPEPLFLLQG-SPEEARTMGEGRHLAFRLQG-----VRVVAWRMGG----- 495

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               +  K + V G L  N W GS   +++ +   
Sbjct: 496 ---LAVPKEVEVAGLLTENAWNGSVSYEVQAVHLR 527


>gi|119493261|ref|ZP_01624101.1| RecJ exonuclease [Lyngbya sp. PCC 8106]
 gi|119452734|gb|EAW33912.1| RecJ exonuclease [Lyngbya sp. PCC 8106]
          Length = 812

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 152/636 (23%), Positives = 270/636 (42%), Gaps = 81/636 (12%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDI----VARVLVNRNV-SIDYAKDFLNPSIRLLMPD- 71
           W      E  +  +   +++ IP+I     A++L++R + + +    FL+  +    P  
Sbjct: 2   WQIQPTVEIPDWMVPALRRY-IPEIDGRFAAQLLMSRGIQTPEQLAVFLD--LNQYKPSS 58

Query: 72  PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC----------- 119
           P    ++   A  R+V A    E I I+GD+D DG  + A++   L              
Sbjct: 59  PFEFGSEIKWAVNRLVIARNCDEAIAIWGDFDADGITATAVLWEGLGQFFNQAGRLAEPT 118

Query: 120 ---SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176
              S   + YIP+R+ + +G N + +E    +G ++I+T D GST+   ++YA   GIDV
Sbjct: 119 DDASACLSYYIPNRLTESHGLNIAGIEGLAQQGVRVIVTCDTGSTNITEIEYAKQLGIDV 178

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236
           IV DHH +  E  P  A++NP  L       HL    V + ++  +Y+ L    + P   
Sbjct: 179 IVTDHHTLPPERPPVVAIINPRNLSPQHPMYHLSGVAVAYKLVEALYQTLPDIPEQP--- 235

Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGL----MVARRQGNPGLKALIERVNISSPI 292
            L +LLDLVA+  + D+V L G  R     G+       +    PG+  L+     +   
Sbjct: 236 -LENLLDLVAIGLIADLVQLTGDCRYLAQCGIEKLKQQQQNPTRPGVGKLLSLCKRTGD- 293

Query: 293 TAENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
              ++ + +GP INA  R  G++     LL S D +    LA++ ++ N  R+ ++  + 
Sbjct: 294 RPTDISFGLGPRINAVSRIHGDARFCVELLTSRDEKRCHKLALETELANTRRKSLQREVS 353

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---- 407
                K+     D+    VIV+   +W  G++GL+A ++ +++GRP+  +S +  G    
Sbjct: 354 RDVIKKLAQL--DLSTTCVIVLSDPQWPTGVLGLVAGQVAQEYGRPTILLSTDIGGNLST 411

Query: 408 ----------------KGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
                              GS RS+   D+ ++V    +  +L + GGH  AAGL++   
Sbjct: 412 EDFPKEGLKIEENPQLLARGSARSVNQIDLYELVK--GQAHLLHRFGGHPFAAGLSLPVE 469

Query: 452 NFGRLCDFFQKFAHNIVPALI---TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           N     +   +     +  +      P+ ++D V   + +   L   L+   P G GNP 
Sbjct: 470 NIPMFTEAINRQLREQIEQIPGGGLEPIVQVDLVCTVAELGRDLFQELKLLEPCGMGNPV 529

Query: 509 PVFAFPNHKLQSI------RVVNLA--HLQMTFESQDSET---LQAIAFRVYGTPLGEFL 557
           P     N    +        +      +++ TFE  D         + +  Y   + E  
Sbjct: 530 PHILIQNCWFSNPWNQNEKDIKGQKVSYIKTTFELWDESVTEGFPGVWWGHYKDEVPE-- 587

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                 R  +   L  N +   KR ++R+L+   VE
Sbjct: 588 -----NRCDLVVELDFNTF--KKRYEVRLLEVRLVE 616


>gi|209525234|ref|ZP_03273777.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima
           CS-328]
 gi|209494419|gb|EDZ94731.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima
           CS-328]
          Length = 737

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 146/607 (24%), Positives = 258/607 (42%), Gaps = 51/607 (8%)

Query: 18  WVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
           W     ++  +  +A  ++H   I    ++++L++R + + +    FL          P 
Sbjct: 2   WQVQPSRKIPDWMIAEIRRHHPNISGKYLSQLLLSRGISTPEKLTRFLEID-SYQPASPA 60

Query: 74  IL-TDCDKAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANM 125
               +  +A  R+  A        N EKI+I+GD+D DG  + A++   L      + + 
Sbjct: 61  EFGAEMQQAIARLTLAYQRCISHNNPEKIVIWGDFDPDGITATAVLWEGLRQFFGSSVSY 120

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
            IP+R+ D +G N   +E    +G  LIIT D GST+   LQ A N GIDVI+ DHH + 
Sbjct: 121 TIPNRLTDSHGLNQPGIETLAAQGCSLIITCDTGSTNLAELQLAQNLGIDVIITDHHTLP 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               P  A++NP  L       HL    + + ++  +Y  L   ++ P    L +LLDLV
Sbjct: 181 PTRPPVVAIINPRNLPSDHPLYHLSGVAIAYKLVEALYMALPGVSQQP----LENLLDLV 236

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQG----NPGLKALIERVNISSPITAENLGYMI 301
           A+  + D+V + G  R    +G+   ++Q      PG+  L++    +      ++ + I
Sbjct: 237 AIGLIADLVEITGDCRYLAKRGIQQLQKQQKNPTRPGVSQLLKLCKNNGD-RPTDISFGI 295

Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           GP INA  R  G+ +    LL + D+Q+   LA   ++ N  RR ++  +      K+  
Sbjct: 296 GPRINAVSRIYGDVSCVVELLTTRDTQQAYKLAWNTEIANSRRRELQKNLAYDVRKKL-- 353

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF---EEDGKGIGSGRSIE 417
           Q  D+     IV+   +W+ G++GL+A ++ +++ RP+  ++     E G   GS  SI 
Sbjct: 354 QKIDLSTTYAIVLSDPQWYVGLLGLVAGQIAQEYRRPTILLTTEGGTETGLARGSASSIH 413

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT-TPV 476
             D+  +V    +  +L   GGH  AA L++   N         +     +  ++     
Sbjct: 414 PIDLYDLVYS--QRHLLHSFGGHPFAASLSLPIENIPIFKQVIDQQLRQRMGGILLPQSP 471

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRVVNLAH 528
             +D V   + +   L   L+   P G GNP P     N          +  +R   + +
Sbjct: 472 IIVDLVCTVAELGYNLFQELKLLEPCGIGNPVPKLLIKNCWFENVWNKNIVDLRRKQVKY 531

Query: 529 LQMT---FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
           ++ T   F+         + +  Y   L          R      L  N      +C++R
Sbjct: 532 IKTTYQLFDDSTESGFPGVWWGHYKEELP-------PGRYDAIVELDFNT--NRSKCEVR 582

Query: 586 VLDASPV 592
           +L   P 
Sbjct: 583 LLAVCPA 589


>gi|169350234|ref|ZP_02867172.1| hypothetical protein CLOSPI_00978 [Clostridium spiroforme DSM 1552]
 gi|169293017|gb|EDS75150.1| hypothetical protein CLOSPI_00978 [Clostridium spiroforme DSM 1552]
          Length = 559

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 131/568 (23%), Positives = 241/568 (42%), Gaps = 42/568 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW  L             Q++ I  ++A++   +N S       L+  +  +  D  + +
Sbjct: 16  RWQIL----NDLDYKHYMQEYKINSLLAKIFAYKNYSKPQVDSLLSNRL--IYHDFSLFS 69

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           +      RI +AI N+EKI I+GDYD DG  + ++++       +    +IP R+ DGYG
Sbjct: 70  EAQMTLERIHEAIENNEKICIYGDYDCDGILATSILVEAFRQLGIEVGYHIPSRLQDGYG 129

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N + +E+   +G  LIITVD G  + +A+  A   GIDVIV DHH        A+++++
Sbjct: 130 LNVTRVEQMAAKGYSLIITVDNGIKANEAIDLANELGIDVIVTDHHSHDDNLPNAFSIIH 189

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
                D      +    V + +   +     +            L  L A+ T+ D++PL
Sbjct: 190 TAISPD-YPYKPISGGFVAYKLASALLNRHDK-----------YLFCLAAITTISDMMPL 237

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE--- 313
           +  NR+ V + L   +    P L+ L   +  +      ++G++I P IN+ GR+GE   
Sbjct: 238 LDENRSLVKRALEFMKENKFPQLELL---LGNNQKYNVTSIGFIIAPKINSFGRLGEIVN 294

Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
            ++L    L +     L+ ++ K   +N  R+ M +   +   A +            + 
Sbjct: 295 PNHLVKYFLQNASIGILQAVSSKAIEINSKRQTMTNQQYQTVLASLDA------NDKFLY 348

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
              +  H G++GL+A +   ++ RPSF +SF ++     GS R+IEG  +  +      E
Sbjct: 349 CYENEVHEGLIGLVAGKYTRQYNRPSFVMSFDQDKKIYKGSARAIEGLSLNNIFKEV--E 406

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L   GGH +A G +V + N   L    + +    +      P       +    ++  
Sbjct: 407 DVLDSYGGHELAGGFSVSKENVENLKSRLKVYLDEKL--ENYQPPLIDAIEVFGDEISKN 464

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYG 550
            +  LE   P G GN    F   +  +  + ++ N  HL+   +   ++ +QA+ F    
Sbjct: 465 SVKQLELLEPLGNGNEETYFYVKDLVVNKVIQLSNGKHLRFDLDLAKAK-VQALYFNQGK 523

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRG 578
                +      K + + G   +N +  
Sbjct: 524 L----YEQYKDAKTISLVGKFNINVFNN 547


>gi|320334659|ref|YP_004171370.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           maricopensis DSM 21211]
 gi|319755948|gb|ADV67705.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus
           maricopensis DSM 21211]
          Length = 720

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 252/573 (43%), Gaps = 48/573 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77
           W             A+   + +  ++A+V+V RN+S  +      P +  L P+P +   
Sbjct: 12  WQLRAPASNEAL-RAVMDAYRVSPMLAQVIVGRNLSAAHV----TPDL-TLTPNPAL--- 62

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +AA R+V+AI + ++I + GDYD DG  + ++++  L     + + +IP R+ +GYG 
Sbjct: 63  -REAAARLVRAIQDRKRIRVHGDYDADGVTATSVLVLGLRELGADVHGFIPHRLNEGYGV 121

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +P  + +  +    L++TVDCG T+   ++   ++G+DVIV DHH    +      +   
Sbjct: 122 HPDRVPEHAD-ACDLLVTVDCGVTNVQEVRALLDRGVDVIVTDHHAPGPDFPDCLVVHPH 180

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
              +      +L  AGV + +L  +   L             +  DL ++  + DV PL+
Sbjct: 181 LTPEYDGDLHNLTGAGVAYHLLWAVREHLGLGEP-------RAYADLASIGIIADVAPLL 233

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G NRA V  GL       + GL+AL+         +A ++ ++I P INA GR+GE++L 
Sbjct: 234 GENRALVRAGLHQLADTQHAGLRALM-GGKKLGLPSARDVAFVIAPRINAAGRMGEADLA 292

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
             LL +   +  + LA  L+V N  RR+++  M ++A   V            IVV  D 
Sbjct: 293 LELLTTTSERRAQELATYLEVRNGERRVVQDRMFKEALTLVN------PDDPAIVVTKDD 346

Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
           WH G++G++A++L E + +P F I+      G GS RS  G  I  +        +L + 
Sbjct: 347 WHAGVMGIVASKLLEAYYKPVFIIAQ-----GKGSVRSTPG--ISAVAGLRGAHDLLKRY 399

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGH  AAG  ++  N          FA          P   +D  L A AV  AL +   
Sbjct: 400 GGHTGAAGFAIQEDNIDAFRTRIHAFAEEHPRP---VPSVLLDAPLPAGAVTRALYEAEG 456

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           +  P+G G   P++   +  L   R+V      + F       ++ + +       G   
Sbjct: 457 TFEPFGEGLRRPLWWVRD-DLGGARLVGKRGDTLQFRVGG---VKGVKYGEGAVREGPH- 511

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                    V  HL +N W G +  ++      
Sbjct: 512 --------DVAAHLSLNAWAGRENIEVAAEALR 536


>gi|313680239|ref|YP_004057978.1| exonuclease recj [Oceanithermus profundus DSM 14977]
 gi|313152954|gb|ADR36805.1| exonuclease RecJ [Oceanithermus profundus DSM 14977]
          Length = 702

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 173/570 (30%), Positives = 259/570 (45%), Gaps = 50/570 (8%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW        +     +  + A+P  VA VL++R        D       L         
Sbjct: 6   RWTLRPW-PAVGEVARLMARLAVPPEVAAVLLDRGFRDLEDLDPPLEPPPL--------P 56

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +AA RIV+AI   E+I I GDYD DG  + A++   L     + + +IP R+ DGYG
Sbjct: 57  GLHEAAARIVRAIERGERIRIHGDYDADGVTAAAILTLGLGELGADVHAFIPHRLHDGYG 116

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            N + + +     A L++TVDCG ++   L   T  G+ VIV DHH V  E  P   +V+
Sbjct: 117 LNMARVPEHRA-AADLLVTVDCGVSNAAELAALTEGGVSVIVTDHHAVPDE-PPEGLIVH 174

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P     L G+     AGV F VL  +   L +          L   DL A+ TV DVVPL
Sbjct: 175 PAYSPALEGRPWPTGAGVAFFVLWAVREALGK-------PPPLEFTDLAAIGTVADVVPL 227

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
           +G+NRA V +GL   R   + GL+ L       +   A  + + I P INA GR+GE+  
Sbjct: 228 LGVNRALVKEGLRRLRESRHVGLRTL--AQRHCTNYDAVEVAFRIAPRINAAGRLGEAET 285

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
             R L +DD  E   LA +LD LN+ R+ +E  MLE+    V  +         IV+   
Sbjct: 286 AFRALTTDDPLEAARLADRLDALNRERQQVEEEMLERVLPTVNPE------DPAIVIHDP 339

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             HPG++G++A+R+ E+F +P F ++      G GS RS  G  I  + + A     L  
Sbjct: 340 EGHPGVMGIVASRVLERFYKPVFIVAR-----GKGSVRSTPG--ISAVGALAAAAEHLKG 392

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGHA AAG +++             +A          P  ++DG L+A  ++  +   L
Sbjct: 393 YGGHAGAAGFSIDPERVPGFAAAIHAYARRHPAP---RPEVRLDGPLDADVMD-EVYRSL 448

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555
               P+G GNP PVF      +  +R ++   H+  +        ++ I ++  G  + E
Sbjct: 449 LLLEPFGEGNPEPVFYTSG-PVTRVRPLSEGRHISFSLGG-----VRVIKWKDEGNGVEE 502

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
                 G+ + V   L  N WRG +  +LR
Sbjct: 503 ------GRELEVAAQLVENAWRGVRNLELR 526


>gi|291568922|dbj|BAI91194.1| single-stranded-DNA-specific exonuclease [Arthrospira platensis
           NIES-39]
          Length = 789

 Score =  270 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 148/609 (24%), Positives = 250/609 (41%), Gaps = 55/609 (9%)

Query: 18  WVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           W         +  +   Q+H   I    + ++L+ R +S  +    FL            
Sbjct: 2   WKVQPSPNIPHWMIPEIQRHHPNISGKYLCQLLLCRGISTREQLTRFLEIDSYQPASPGE 61

Query: 74  ILTDCDKAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANMY 126
              +  +A  R+  A        N EKI+I+GD+D DG  + A++   L      + +  
Sbjct: 62  FGAEMQEAIARLTLAYQKCISHNNPEKIVIWGDFDADGITATAVLWEGLRQFFGSSVSYT 121

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           IP+R+ D +G N   +E    +G  LIIT D GST+   LQ A N GIDVI+ DHH +  
Sbjct: 122 IPNRLTDSHGLNQRTIETLAAQGCSLIITCDTGSTNLAELQLAQNLGIDVIITDHHTLPP 181

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              P  A++NP  L       HL    + + ++  +Y  L   ++ P    L +LLDLVA
Sbjct: 182 TRPPVLAIINPRNLPTDHPLYHLSGVAIAYKLIEALYMALPGVSQQP----LENLLDLVA 237

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMIG 302
           +  + D+V L G  R    +G+   ++Q      PG+  L++    +      ++ + IG
Sbjct: 238 IGLIADLVELSGDCRYLAKRGIQQLQKQLDQPTRPGVAELLKLCQKNGD-RPTDISFGIG 296

Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           P INA  R  G+ +    LL + D Q  + LA+  ++ N  RR ++  +  +   K+  Q
Sbjct: 297 PRINAVSRIYGDVSCVVELLTTPDPQRAKQLAINTEIANLRRRELQKNLAYEVREKL--Q 354

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF---EEDGKGIGSGRSIEG 418
             D+     IV+   +W  G++GL+A ++ +++ RP+  ++     E G   GS RSI  
Sbjct: 355 RIDLSTTYAIVLSDPQWSVGVLGLVAGQIAQEYSRPTILLTTEGGTETGLARGSARSINQ 414

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT-TPVF 477
            D+  +V    +  +L   GGH  AAGL++   N         +     +  ++      
Sbjct: 415 IDLYDLVY--NQRHLLHNFGGHPFAAGLSLPIENIPIFTQAIDRELRQRMGGILLSQSPI 472

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA---- 527
            +D V   + +   L   L+   P G GNP P     N    ++       +        
Sbjct: 473 IVDLVCTVAELGSHLFKELKLLEPCGMGNPVPKLLIKNCWFDNVWNENPYDLRGKKVQYI 532

Query: 528 ----HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
               HL   F+         + +  Y   L          R      L  N     +  +
Sbjct: 533 RTTYHL---FDDSTELGFPGVWWGHYKEELP-------PGRYDAIVELDFNAH--KRCYE 580

Query: 584 LRVLDASPV 592
           +R+L   P 
Sbjct: 581 VRLLAVRPA 589


>gi|15806146|ref|NP_294850.1| single-stranded-DNA-specific exonuclease [Deinococcus radiodurans
           R1]
 gi|6458861|gb|AAF10698.1|AE001962_6 single-stranded-DNA-specific exonuclease, putative [Deinococcus
           radiodurans R1]
          Length = 684

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 142/506 (28%), Positives = 228/506 (45%), Gaps = 38/506 (7%)

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            A+   ++I I GDYD DG ++ A ++  L     N + +IP R+ +GYG +P  + +  
Sbjct: 2   AAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANVHGFIPHRLNEGYGIHPDRVPEHA 61

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
              A L++TVDCG ++ D ++     G +V+V DHH           +      D    +
Sbjct: 62  A-AADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECLVVHPHLTPDYDPDR 120

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
            +L  AGV + +L  +Y  L +        +  +LL L  L TV DV PL+G NRA V  
Sbjct: 121 HNLTGAGVAYHLLWAVYEELGR-------PEPRALLPLATLGTVADVAPLLGENRALVRA 173

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           GL    R   PGL+AL+    +    TA ++ +++ P INA GR+GE++    LL +   
Sbjct: 174 GLAEMARTELPGLRALMNEKRVRQ-PTARDVAFILAPRINAAGRMGEADRALELLTTPSD 232

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
            E + LA  L++ NQ RR ++  M  QA                +V+  D WH G++G++
Sbjct: 233 HEAKSLAAYLEIRNQERRKIQDDMFAQALQLA------DPNDPALVLTHDDWHAGVMGIV 286

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           A++L E F RP + ++      G GS RS  G  I  +        +L + GGH  AAG 
Sbjct: 287 ASKLVETFNRPVYIVAQ-----GKGSVRSTPG--ISAVQGLRESRDLLGRFGGHPGAAGF 339

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506
           +++  NFG L +    +           P  ++D  L  +A+   L+  L    P+G GN
Sbjct: 340 SLDPQNFGALRERIHGYVRQFPTP---VPAVRLDAPLPVAALTPELLSELSILEPFGEGN 396

Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P P++      L   R+V      + F       ++ + +       GE           
Sbjct: 397 PRPLWHLRG-PLTDTRLVGKQGDVLQFRFGG---VKGMKYSERDDAAGER---------D 443

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592
           V   L +N W+G    +L      P+
Sbjct: 444 VAAELALNEWKGRTSLELHAAALRPL 469


>gi|158338691|ref|YP_001519868.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina
           MBIC11017]
 gi|158308932|gb|ABW30549.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina
           MBIC11017]
          Length = 780

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 151/601 (25%), Positives = 262/601 (43%), Gaps = 47/601 (7%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75
           +W+    Q     A  I+ ++     +A++L  R +        FL+P+     P P   
Sbjct: 17  KWLIADIQ---RVAPEISGQY-----LAQLLWQRGIHDPQMIPGFLDPNHYQPTP-PSAF 67

Query: 76  -TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRI 131
             + ++A +R++QA   ++K+ I+GD+D DG  S A+    L             IP+RI
Sbjct: 68  GAEMEQAVQRLIQACDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLTYTIPNRI 127

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            + +G N   +E+   +G QLI+T D GST+   ++YA   G+DVI+ DHH +  E  P 
Sbjct: 128 TESHGLNRPGIERLAVQGYQLIVTCDTGSTNLTEIEYANELGLDVIITDHHTLPPERPPV 187

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A++N           HL    V F ++  +Y  L Q  + P    L  LLDLVA+  + 
Sbjct: 188 TAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQP----LDHLLDLVAIGLIA 243

Query: 252 DVVPLIGLNRAYVVKGL----MVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
           D+V L G  R    +G+        ++  PG+  L+E    +      ++ + +GP INA
Sbjct: 244 DLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGD-RPTDISFGLGPRINA 302

Query: 308 GGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
             R  GE++    LL S DS     LA + ++ N  R+ ++  +L Q   K+  +  D+ 
Sbjct: 303 VSRIHGEASFCVELLTSKDSARCRQLAEETELANTRRKSLQKDVLRQVTRKL--EQLDLS 360

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS------FEEDGKGIGSGRSIEGFD 420
             SVIV+   +W  G++GL+A ++ + +GRP+  +               GS RS+   D
Sbjct: 361 TTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETVAGKNNVRLARGSARSVNQID 420

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           + ++V    +  +L   GGH  AAGL++   N   L +   + A     +     V + D
Sbjct: 421 LYELVHS--QANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSS-DPAAVVQAD 477

Query: 481 GVLNASAVNIA----LIDMLESAGPYGAGNPNPVFAFPNH---KLQSIRVVNLAHLQMTF 533
            V+  + +       L   L+   P G GNP P     N    ++ +  + +    ++ +
Sbjct: 478 LVVTLAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQY 537

Query: 534 ESQDSETLQAIAF--RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                      +F     G   G +  +           L  N +   +R ++R+    P
Sbjct: 538 IKTTFYICDT-SFESGFPGLWWGHYKEEIPAGPCDAIVELDFNAY--ERRYEVRLEAVRP 594

Query: 592 V 592
           V
Sbjct: 595 V 595


>gi|284053626|ref|ZP_06383836.1| exonuclease RecJ [Arthrospira platensis str. Paraca]
          Length = 789

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 148/607 (24%), Positives = 255/607 (42%), Gaps = 51/607 (8%)

Query: 18  WVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73
           W         +  +   Q+H   I    + ++L+ R +S  +    FL          P 
Sbjct: 2   WKVQPSPNIPHWMIPEIQRHHPNISGKYLCQLLLCRGISTREQLTRFLEID-SYQPASPA 60

Query: 74  IL-TDCDKAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANM 125
               +  +A  R+  A        N EKI+I+GD+D DG  + A++   L      + + 
Sbjct: 61  EFGAEMQEAIARLTLAYQKCISHNNPEKIVIWGDFDADGITATAVLWEGLRQFFGSSVSY 120

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
            IP+R+ D +G N   +E    +G  LIIT D GST+   LQ A + GIDVI+ DHH + 
Sbjct: 121 TIPNRLTDSHGLNQRTIETLAAQGCSLIITCDTGSTNLAELQLAQDLGIDVIITDHHTLP 180

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
               P  A++NP  L       HL    + + ++  +Y  L   ++ P    L +LLDLV
Sbjct: 181 PTRPPVLAIINPRNLPTDHPLYHLSGVAIAYKLIEALYMALPGVSQQP----LENLLDLV 236

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMI 301
           A+  + D+V L G  R    +G+   ++Q      PG+  L++    +      ++ + I
Sbjct: 237 AIGLIADLVELSGDCRYLAKRGIQQLQKQLDQPTRPGVAELLKLCQKNGD-RPTDISFGI 295

Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           GP INA  R  G+ +    LL + D Q  + LA+  ++ N  RR ++  +  +   K+  
Sbjct: 296 GPRINAVSRIYGDVSCVVELLTTPDPQRAKQLAINTEIANLRRRELQKNLAYEVREKL-- 353

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF---EEDGKGIGSGRSIE 417
           Q  D+     IV+   +W  G++GL+A ++ +++ RP+  ++     E G   GS RSI 
Sbjct: 354 QRIDLSTTYAIVLSDPQWSVGVLGLVAGQIAQEYSRPTILLTTEGGTETGLARGSARSIN 413

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT-TPV 476
             D+  +V    +  +L   GGH  AAGL++   N         +     +  ++     
Sbjct: 414 QIDLYDLVY--NQRHLLHNFGGHPFAAGLSLPIENIPIFTQAIDRELRQRMGGILLSQSP 471

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA--H 528
             +D V   + +   L   L+   P G GNP P     N    ++       +      +
Sbjct: 472 IIVDLVCTVAELGSHLFKELKLLEPCGMGNPVPKLLIKNCWFDNVWNENPYDLRGKKVQY 531

Query: 529 LQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
           ++ T++  D  T      + +  Y   L          R      L  N     +  ++R
Sbjct: 532 IRTTYDLFDDSTELGFPGVWWGHYKEELP-------PGRYDAIVELDFNAH--KRCYEVR 582

Query: 586 VLDASPV 592
           +L   P 
Sbjct: 583 LLAVRPA 589


>gi|269123538|ref|YP_003306115.1| phosphoesterase RecJ domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314864|gb|ACZ01238.1| phosphoesterase RecJ domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 557

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 128/578 (22%), Positives = 254/578 (43%), Gaps = 28/578 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W S       N+     +     +++  +L+N+ + S +    FLNPS + L  DP +L
Sbjct: 4   KWTSYDSDYLKNK----MELFNKDELITTLLLNKKIYSKEEMNSFLNPSYKQLH-DPFLL 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + ++   +I++ +   +KI+IFGDYD+DG +    + +     ++   +YIP R +  Y
Sbjct: 59  NNMEEVVDKILEFMDKDKKILIFGDYDIDGISGSLYLSKIFDKLNIKNEIYIPTRTMFKY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
             N         +  +L+I+VD        +    + G+D+I+ DHH   ++ + +   +
Sbjct: 119 SLNEEYFRNIEEKNIKLVISVDNSFGEILHMDMLKSMGVDLIITDHH-FNNKNMKSILEI 177

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           NP    +      L  +GVVF ++  IY  L          D+    +L++LAT+ DV+ 
Sbjct: 178 NPK-KSENYPFKELSGSGVVFKLVQAIYSKLPDR----SISDIYEYCELISLATIADVME 232

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314
            +  NR  + +GL    +      K ++E   I    IT  ++ Y I P INA G++   
Sbjct: 233 CVDENRFLIKRGLKNFSKTNILAFKMIMENFKIDPEYITINDISYRISPLINAIGKLDVP 292

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               + L SD  +    +  ++   N  R+  E  +  +    +  +  +I++ + I  E
Sbjct: 293 LKIIKFLTSDSEKVNIQILNEMYEYNNERKNYEIKIYNKIVKFL--ENKEIKKLNYIYYE 350

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
            +  + GI+G + ++L  +F  P   +S  + G   GS RSI+  +I K++S        
Sbjct: 351 INDINSGILGSITSKLALEFKVPVIIVSKVD-GYCKGSCRSIDNKNIYKLISE--FSDYF 407

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
           +  GGH +AAG  +   N   + D  ++  +N+     +     +D     S ++   + 
Sbjct: 408 INFGGHNLAAGFLITLDNLTLIRDKIKQKMYNLNLTEKSKNSIVVDVKFPVSQISSKKMT 467

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552
            + S GP+G  N  P F   N K ++I +      H +     ++ + +Q + + +    
Sbjct: 468 EINSLGPFGLSNDEPNFYDENIKFRNILIFGVDNKHFKANIR-RNGKDIQILGYNLSH-- 524

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             +  +++  K   +     +    G K  +L++ D  
Sbjct: 525 --KLNLKNSNKLYKIIYTPEL---MGKKVFRLKLKDIE 557


>gi|241767803|ref|ZP_04765397.1| phosphoesterase DHHA1 [Acidovorax delafieldii 2AN]
 gi|241361146|gb|EER57799.1| phosphoesterase DHHA1 [Acidovorax delafieldii 2AN]
          Length = 468

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 215/479 (44%), Gaps = 25/479 (5%)

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
             +PDR+ DGYG  P +  +    GA ++ITVD G  S D +  A   G+ V+V DHH  
Sbjct: 1   YLVPDRVTDGYGLTPPIARRVAERGADVLITVDNGIASVDGVAEAKALGLTVLVTDHHLP 60

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLL 242
                 A A+VNPN+         +   GV+F VL+ +   LR            L  LL
Sbjct: 61  GPALPAADAIVNPNQPGCTFESKSMAGVGVMFYVLLALRAELRARGLFNAATQPKLDPLL 120

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYM 300
            L+AL TV DVV L   NR  V +GL   R    P   A         +   T  + G+ 
Sbjct: 121 PLIALGTVADVVKLDANNRRLVAQGLKRIRAGQMPAGVAALFHAAGRKAPAATTFDFGFA 180

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP INA GR+ +  LG   L++DD+     LA  LD +N+ RR +E  M +QA     +
Sbjct: 181 LGPRINAAGRLADMTLGIECLLTDDAGRAAELAATLDGINRERREIEGGMRDQAMLMAES 240

Query: 361 QCDD-IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRS 415
             D+  +    I V    +H G+VG++A+R+K+K  RP+F      +  ++ +  GSGRS
Sbjct: 241 LFDESEEPPPAISVFDPDFHEGVVGIVASRIKDKLHRPTFVFAASSAPGKEHELKGSGRS 300

Query: 416 IEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           I GF +   +        G+++K GGHAMAAG TV   +F      F + A   + A   
Sbjct: 301 IPGFHLRDALDLVAKRHPGVILKFGGHAMAAGCTVAEESFDVFEQAFAQVAQEWLDAATL 360

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531
           T   + DG L        ++D L     +G G   P F     ++ S R+V     HL +
Sbjct: 361 TRRIETDGPLAPEYCRADMVDTLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEAKNHLSI 418

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
               Q    + AI F                 R+ +   L VN W+G +R Q  V  A 
Sbjct: 419 KLIHQ-GNPIDAIWFGRTE---------PLPARVLLAFRLDVNEWKGERRVQFLVEGAQ 467


>gi|290243093|ref|YP_003494763.1| phosphoesterase RecJ domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945598|gb|ADC73296.1| phosphoesterase RecJ domain protein [Thioalkalivibrio sp. K90mix]
          Length = 601

 Score =  267 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 158/611 (25%), Positives = 260/611 (42%), Gaps = 38/611 (6%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNR--NVSIDYAKD-FLNPSIRLLMPDP 72
            RW  + G      ++A   +  +    A ++  R      D  +  F++  +  L   P
Sbjct: 2   KRWQEIEGHPD---SVARAVEAGLTPFQAEIVAKRMPEADTDTIRKGFVDVRLANL-DSP 57

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH-CSV---NANMYIP 128
             L   + A  R+V A+   + I I  D+DVDG  S A++ R L H           YI 
Sbjct: 58  DTLPGIEAATERLVSAVLLEQVIAIETDHDVDGVTSHAILYRTLVHVMGHAPEKVQSYIG 117

Query: 129 DRIVDGYGPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
            R+ +GYG + +++++    +E  QL++T D G+   D +     +G+D IV DHH V  
Sbjct: 118 HRLKEGYGLSDAVVDRILAADEKPQLVVTADNGTADEDRIARLAGEGVDTIVTDHHAVPE 177

Query: 187 EEIPA--YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL----RQDNKVPLNFDLLS 240
              P    A V+P R D       +    V +L+ + +YR        D+  P    L+ 
Sbjct: 178 AGPPRSAVACVSPARDDSAYPDTTIAGCMVAWLLAMRVYRQWCEVQGLDDPGPGRAALID 237

Query: 241 LLDLVALATVCDVVPLIG--LNRAYVVKGLMVAR-RQGNPGLKALIERVNISSPITAEN- 296
           +L  VAL T+ D V L     NR  V KGL         P  +              E  
Sbjct: 238 MLPEVALGTIADCVSLGESVNNRTIVRKGLDRINADDPRPCWRVAKRHTCQHGAPFTEER 297

Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356
           L + +GP INA GR+ E+  G + L+S D  E E     LD  N  RR +E AM + A  
Sbjct: 298 LAFDVGPRINARGRLDEAMAGVKFLLSKDEGEAEQWWSVLDAENTQRRAVEKAMKDVAIG 357

Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG--SGR 414
           K   Q    +  S I+V  +  H G+ G++A+R+ E++GRP+  +S   +       S R
Sbjct: 358 KAEAQVS--KGVSGIMVWMENGHSGVHGIVASRVLERYGRPTLCVSPVHESGDRVTGSAR 415

Query: 415 SIEGFDIGKM--VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL- 471
            +EG  + +      A     ++K GGHA A G+T+ER     L + +    +    A  
Sbjct: 416 GVEGVHVERALRQVKADLGNRVMKFGGHAGAGGITLERSALDALEESWNAACNEQAQAHG 475

Query: 472 -ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAH 528
            +  P+ +++        +   +  LE+  P+G     PV+A     +Q+++ +     H
Sbjct: 476 LVLEPLLQVEAW-PEGGFDDRRVRELEALAPFGERFRRPVYALKAL-IQTVKAMGQEKTH 533

Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           L++  ++ D  T  A+ F               G+ + V   + +N++ G  R QL V +
Sbjct: 534 LRLALKT-DGGTYGAVYFNAAEPGGETQWR--SGQSVWVAASVGLNHYMGHCRLQLVVRE 590

Query: 589 ASPVEGHHFAK 599
             P      A 
Sbjct: 591 MRPANQEQAAV 601


>gi|145641180|ref|ZP_01796760.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           R3021]
 gi|145274017|gb|EDK13883.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.4-21]
          Length = 412

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 15/416 (3%)

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245
             PA A+VNPN          L   GV F +++ +    R+          +   LLDLV
Sbjct: 1   MPPADAIVNPNLTQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 60

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGP 303
           AL T+ DVVPL   NR    +GLM  R +    G+ AL E  N +    T+ +LG+ IGP
Sbjct: 61  ALGTIADVVPLDQNNRILAYQGLMRIRARHCRLGIIALAEVANRNVEQFTSSDLGFCIGP 120

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+   ++G  LL++++  +   LA+ LD LNQ R+ +E+ M  +A         
Sbjct: 121 RLNAAGRLDNMSIGVELLLANEMSKARELALDLDQLNQTRKEIEAGMKLEAIKICQNLTA 180

Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++    I +    WH G++G++++R+K+++ RP  A + + +G   GS RSIEG  + 
Sbjct: 181 LFKELPYGITLYQPDWHQGVLGIVSSRIKDQYHRPVIAFAQDSEGILKGSARSIEGLHMR 240

Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
            ++         +++K GGHAMAAGL++   +F      F +   + +       V   D
Sbjct: 241 DVLERIHSQHPNMILKFGGHAMAAGLSIREEHFADFQHIFNQTVADWLDEEHLQGVIWTD 300

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537
           G LN++  N+   ++++S G +G G P P F     K+   R +     HL+M  E  Q 
Sbjct: 301 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQG 359

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              L AIAF +      +  +    K+  +   L +N +RG++  QL V    P++
Sbjct: 360 GVLLDAIAFNIDTRLYPDLSI----KQARLAYKLDINEFRGNRSVQLLVDYIEPID 411


>gi|291276434|ref|YP_003516206.1| putative single-stranded-DNA-specific exonuclease [Helicobacter
           mustelae 12198]
 gi|290963628|emb|CBG39460.1| putative single-stranded-DNA-specific exonuclease [Helicobacter
           mustelae 12198]
          Length = 517

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 135/504 (26%), Positives = 235/504 (46%), Gaps = 31/504 (6%)

Query: 59  DFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL 116
            F + S   L  +P P  L D  K A+ +   +    KI+I GDYDVDG  S  +MM+F 
Sbjct: 16  RFCDDSFARLQDLPHPHSLKDAQKGAQIVAGIMQEGGKILIVGDYDVDGTLSAVIMMKFF 75

Query: 117 SHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175
                 N +  IP+R  DGYG    L+E++ +    L+ITVD G  + D  +Y   Q   
Sbjct: 76  GMLGYENVSYLIPNRFSDGYGVQRHLLEQYPS---DLVITVDNGVAALDVGEYCKEQKRK 132

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           +I+ DHH ++ +   A AL+NP +      Q  +C AGV +     I   L ++      
Sbjct: 133 LIITDHHALQHQIPQADALINPQQETCSFPQKSICGAGVAWYFCNAIKIALGKN------ 186

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
           F LL LL  VA+AT+ DV+PL  +N+ +V KGL + +   +     L   +      +A+
Sbjct: 187 FSLLELLKYVAIATIADVMPLCQVNKLFVKKGLELLKDSHSMQDSLLKSLLKGRD-FSAQ 245

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
           ++ + I P +N+ GR+ ++ +     ++    E+    + L  LNQ R+     M  +  
Sbjct: 246 DVAFSITPLLNSAGRMKDARVVCEFFLATKKDEIAAHFLALKKLNQMRKDQTQQMESEMF 305

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
                    ++  + ++   + W+ G++G+LAA+L ++  +P+F  + +E G   GSGRS
Sbjct: 306 ------AHFLESENCVLAYKESWNEGLLGILAAKLSKEKQKPAFVFTQKE-GCLKGSGRS 358

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
               DI    +    E   ++ GGH+ A G+ ++        D F +    + P      
Sbjct: 359 DGKIDI--FQTLLPHERNFLRFGGHSEAVGICIQEDKIPWFMDLFSRECFVLSP-----K 411

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535
             ++ G +    ++  L+++L    PYG GNP P F     K++  ++    H ++ FE 
Sbjct: 412 PNEVLGEICLQDIDGELLEILRRFEPYGQGNPPPQFLIRGAKIKESKIFKELHQKLEFEH 471

Query: 536 QDSETLQAIAFRVYGTPLGEFLMQ 559
           Q    + A++F          ++ 
Sbjct: 472 Q----ISALSFFCKEFYKENEVID 491


>gi|145631269|ref|ZP_01787042.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           R3021]
 gi|144983196|gb|EDJ90691.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           R3021]
          Length = 412

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 15/416 (3%)

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245
             PA A+VNPN          L   GV F +++ +    R+          +   LLDLV
Sbjct: 1   MPPADAIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 60

Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGP 303
           AL T+ DVVPL   NR    +GLM  R +    G+ AL E  N +    T+ +LG+ IGP
Sbjct: 61  ALGTIADVVPLDQNNRILAYQGLMRIRARHCRLGIIALAEVANRNVEQFTSSDLGFCIGP 120

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            +NA GR+   ++G  LL++++  +   LA+ LD LNQ R+ +E+ M  +A         
Sbjct: 121 RLNAAGRLDNMSIGVELLLANEMSKARELALDLDQLNQTRKEIEAGMKLEAIKICQNLTA 180

Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
             ++    I +    WH G++G++++R+K+++ RP  A + + +G   GS RSIEG  + 
Sbjct: 181 LFKELPYGITLYQPDWHQGVLGIVSSRIKDQYHRPVIAFAQDSEGILKGSARSIEGLHMR 240

Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
            ++         +++K GGHAMAAGL++   +F      F +   + +       V   D
Sbjct: 241 DVLERIHSQHPNMILKFGGHAMAAGLSIREEHFDDFQHIFNQTVADWLDEEHLQGVIWTD 300

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537
           G LN++  N+   ++++S G +G G P P F     K+   R +     HL+M  E  Q 
Sbjct: 301 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQG 359

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
              L AIAF +      +  +    K+  +   L +N +RG++  QL V    P++
Sbjct: 360 GGLLDAIAFNIDTRLYPDLSI----KQARLAYKLDINEFRGNRSLQLLVDYIEPID 411


>gi|288818599|ref|YP_003432947.1| single-strand-DNA-specific exonuclease [Hydrogenobacter
           thermophilus TK-6]
 gi|288787999|dbj|BAI69746.1| single-strand-DNA-specific exonuclease [Hydrogenobacter
           thermophilus TK-6]
 gi|308752190|gb|ADO45673.1| single-stranded-DNA-specific exonuclease RecJ [Hydrogenobacter
           thermophilus TK-6]
          Length = 550

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/576 (23%), Positives = 258/576 (44%), Gaps = 47/576 (8%)

Query: 11  CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70
             ISG  W+ L       R   + +K+    ++A++L NRN+         +  +R L+P
Sbjct: 2   KGISGRDWLILSHLIKPQR--QMEEKYG--YLIAQILANRNLDD----KIFDNRLRNLLP 53

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
              ++ + ++A  +I +++   ++I+I+GDYDVDG    A++  FL          +P R
Sbjct: 54  Y-HLIPNIEQAVEKIARSVKEGKRIVIYGDYDVDGVTGSAILYDFLKKAGAKVYAVLPTR 112

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
              GYG    L+E F ++ AQL+IT+D G+T+ + L    +  I+ IV+DHH    E   
Sbjct: 113 QT-GYGLRKELVETF-SKYAQLLITIDNGTTAIEEL---KDPPIETIVVDHHNPHEELPN 167

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
           A  +         +    + +  + F ++  + R L  D       D+   L L ++ T+
Sbjct: 168 ALVVNPKIDEGLPNELKEISSVALSFYLVARLRRELEVD------VDVRDYLYLTSIGTI 221

Query: 251 CDVVPLIGLNRAYVVKGLMVAR------RQGNPGLKALIERVNISSPITAENLGYMIGPS 304
            DV+PL  LNR  V  G+ +             G+K L+E + I   +T+ ++ + I P 
Sbjct: 222 ADVMPLNPLNRILVSNGIRMLNYIASGGETKAYGIKVLMESIGIRGEVTSRDIAFSIAPR 281

Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           +NA GR+ + ++   LL+S D     M   K++  N+ R+ + +   E+A +++ ++   
Sbjct: 282 LNAPGRVSKPSIAMNLLLSKDENTARMWLKKVEEANEQRKYISNVAFEKAMSEITSK--- 338

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
            +  + +VV    W  G+ G++A +L     +PS   S         S R +EG ++ + 
Sbjct: 339 -KDRNFLVVRMGEWASGVAGIVAGKLSSMLSKPSAVFS-VGKDLATASVRGVEGINVYEG 396

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
           +       + ++ GGH  AAGLT+ + +         +    I       P   ID +L+
Sbjct: 397 LKKL--SHMFLRWGGHTSAAGLTIRKEHLDEFEMMIDQVFSEIKGEE---PRLYIDMILD 451

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544
            + V+  ++  L+   PYG G P PVF     +++    +   + +   ++Q +     I
Sbjct: 452 PTHVDEGVLRSLKMLEPYGEGFPQPVFVSEPLRIEK---IEENNGRWLLKAQPN-----I 503

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCV---NYWR 577
            F  Y     + +      +  V   +     N++ 
Sbjct: 504 NFFAYNVQWRKNIENILFSKRRVVYTVDTRRSNFFN 539


>gi|330685048|gb|EGG96720.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis VCU121]
          Length = 404

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/416 (29%), Positives = 215/416 (51%), Gaps = 19/416 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S + W      E I+   +I Q+  +  I+ ++L ++N+   +  +  LN     +  D 
Sbjct: 4   SKYNWNLNNPTEYISD--SIAQRLKLSPIIKKILESKNIIEEEDIQRTLNG--VDINHDS 59

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L+D DKA  RI QAI  +E+I+++GDYD DG  S  +++  L         YIP+R  
Sbjct: 60  SLLSDIDKAIERINQAIDKNERILVYGDYDADGVTSTTILVHTLQKLGAQVGWYIPNRFT 119

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN    +   +EG  LIITVD G   +  ++ A + G+DVIV DHH++      AY
Sbjct: 120 EGYGPNELAFQNAYDEGVSLIITVDNGIQGHAEIKMAQDLGVDVIVTDHHEIGRTLPEAY 179

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+P   +      +LC AGV + +   +   +                   A+ T+ D
Sbjct: 180 AIVHPMHPEFDYPFKYLCGAGVAYKLAQALLENVPN-----------YFKAYAAIGTIAD 228

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +V L   NR+ V  GL V        +KAL+ + + +  IT E +G++IGP +NA GR+ 
Sbjct: 229 LVSLTDENRSIVQHGLKVMNDSCPVPVKALLNQASYNDEITEETIGFIIGPRLNAVGRLE 288

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           +++L + LL+SD   E E LA +++  NQ R+ + + + E+A    + +    Q    ++
Sbjct: 289 DASLAAELLMSDSEDEAEFLAEQVEHFNQERKDIVAQITEEAL--AMAENYVSQGHQFLL 346

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427
           +  + WH G++G++A+++ E +  P+  ++   E     GS RSIE   + ++++ 
Sbjct: 347 LAKEDWHEGVLGIVASKIVETYSLPTLILNIDYEQNHAKGSARSIEQVSMFEILNA 402


>gi|223986335|ref|ZP_03636344.1| hypothetical protein HOLDEFILI_03654 [Holdemania filiformis DSM
           12042]
 gi|223961684|gb|EEF66187.1| hypothetical protein HOLDEFILI_03654 [Holdemania filiformis DSM
           12042]
          Length = 534

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 138/560 (24%), Positives = 239/560 (42%), Gaps = 44/560 (7%)

Query: 31  LAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90
             I Q   + ++ A+VL  R    +  +  LN  +  L P      +  +  +R+  A  
Sbjct: 13  QRIRQDFGVSELCAKVLACRCQDDEQIRQVLNQDL-TLHPCQS--PELTQILKRLDTARQ 69

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
             EK++I GDYD DG  + A+M   L    + +  YIP R+ +GYG +   ++   ++G 
Sbjct: 70  RHEKVLIAGDYDADGLCATAIMKEALDRAGIVSGFYIPHRLNEGYGLSAQTVQLARDKGY 129

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            LI+TVD G  ++ AL  A   G++VIV DHH +  +E     L++P R+       + C
Sbjct: 130 SLILTVDNGVAAHPALTLAKQLGVEVIVTDHHVI-QQEPECLTLLHPTRMG--KPWQYCC 186

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            AGV   + + +    ++               L A+AT+ D++PL   NR  V  GL  
Sbjct: 187 GAGVALQLSMAMTGPRKRPIM------------LAAIATIADMMPLWEENRILVRLGLKY 234

Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLISDDSQ 327
              +    ++AL +        T + + Y I P +NA GR+ E    N   R L+ +D  
Sbjct: 235 LNERQFTAIEALND--KKCELWTEKEVAYQIVPKLNAAGRLAELCNINNIVRYLLLEDPA 292

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           ++E  A ++  +NQ RR M   M + A  ++  +       +  V+    +H GI+GL+A
Sbjct: 293 QIESAAAQIRQINQKRRQMSDKMTKTAMEQMHPE------DAFHVIADKEFHEGIIGLVA 346

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447
            R+  +  RP+  ++    G   GS RS+ G DI          G L++ GGHA AAG+ 
Sbjct: 347 GRIMNETHRPTLVLAPSAQG-YKGSVRSVPGLDIQVFFEDL--RGYLIQFGGHAQAAGIE 403

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           V       L           +   +  P  ++   ++A  +N+  +  L+   P+G    
Sbjct: 404 VAADQLEPLRQAILAKM-ETLDLALPEPTLQV-LPVSAQEINLTALHELDQLAPFGQQFE 461

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567
              F      +     +   + +    +   + + AI+F                     
Sbjct: 462 PVTFEVSGLTILQYAKMKEVYPKWQ-TTNGVDLIDAISFNR---------ELDNPHPASW 511

Query: 568 TGHLCVNYWRGSKRCQLRVL 587
            G L +N +RG ++C + V 
Sbjct: 512 IGQLQINRFRGREKCSILVE 531


>gi|17229481|ref|NP_486029.1| single-strand-DNA-specific exonuclease [Nostoc sp. PCC 7120]
 gi|17131079|dbj|BAB73688.1| single-strand-DNA-specific exonuclease [Nostoc sp. PCC 7120]
          Length = 779

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 156/619 (25%), Positives = 257/619 (41%), Gaps = 64/619 (10%)

Query: 17  RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMP 70
           +W+    ++     +   +K+      I    A++L  R V  +     F+N        
Sbjct: 2   QWIITATEQPPEWFIQAVKKYVSASKGI--YAAQLLWQRGVKEESQLAAFINFKNYQPAS 59

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127
                 +   A  R+ QA    EKI I+GD+D DG  S A++   L          N YI
Sbjct: 60  AFEFAQEMQLAVARLQQARNKGEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYI 119

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R+ + +G N S +     +G  LI+T D GST+ D + YA   GIDVIV DHH + +E
Sbjct: 120 PNRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIYAQKLGIDVIVTDHHTLPTE 179

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
             P  A++NP  L +     HL   GV + ++  +Y+ L    + P    L  LLDLVA+
Sbjct: 180 RPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNP----LEDLLDLVAV 235

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGY 299
             + D+V L G  R     G+   +         +  PG+  L+E    +      ++ +
Sbjct: 236 GLIADLVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGD-RPTDISF 294

Query: 300 MIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
            +GP INA  R  G+++    LL S D      LA   ++ N  R+ ++  +  Q   K+
Sbjct: 295 GLGPRINAVSRIQGDASFCVELLTSRDINRCHQLAEVTELANTRRKSLQKDVQAQVTQKL 354

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------- 409
                D+   SVIV+E  +W  G++GL+A ++ ++ GRP+  +S E  G           
Sbjct: 355 TQL--DLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGLGNEEDSSPSPIP 412

Query: 410 ------IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
                  GS RS+   D+ ++V    +  +L + GGH  AAGL++   N         + 
Sbjct: 413 NLQLLARGSARSVNSVDLYQLVK--HQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQ 470

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ---- 519
               + ++  TP  + D V+  + +   L   L+   P G GNP P     N   +    
Sbjct: 471 LRQTLGSVNLTPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWH 530

Query: 520 --SIRVVNLA--HLQMTF---ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572
                       +++  F   +         I +  Y   L          R      L 
Sbjct: 531 RNQQDWQGKKVQYIKAEFDIRDDSSKNPFPGIWWGHYKDELP-------IGRCDCIAELD 583

Query: 573 VNYWRGSKRCQLRVLDASP 591
            N +   KR ++R++   P
Sbjct: 584 YNTF--KKRYEIRLIALRP 600


>gi|149183945|ref|ZP_01862328.1| single-stranded-DNA-specific exonuclease [Bacillus sp. SG-1]
 gi|148848348|gb|EDL62615.1| single-stranded-DNA-specific exonuclease [Bacillus sp. SG-1]
          Length = 355

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 16/357 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S  RW+      G   +  + +K  I  IV+++L NR +  I+ A+ FL         DP
Sbjct: 4   SKSRWLVK--DHGETNSKKLQEKLNISPIVSKLLANRGIHDIEEARTFLYGE-EQPFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            ++ D DKA  R+ +AI   E I+IFGDYD DG +S + MM+ L      A+ YIP+R  
Sbjct: 61  YLMMDMDKAVERVKKAIEYGEAILIFGDYDADGVSSTSTMMQTLLDLGAEAHFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +       EG  LIITVD G  +    Q A   G+D+I+ DHH+   E   A 
Sbjct: 121 EGYGPNENAFRWAAGEGFSLIITVDTGIAALKEAQLAKELGVDLIITDHHEPGPELPEAL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P R         L   GV F     +Y  L +            LLDL A+ T+ D
Sbjct: 181 AILHPKREGSTYPFTDLAGVGVAFKFAHALYGSLPE-----------HLLDLAAIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311
           +VPL G NRA   KGL+  R    PG+ AL +  N     IT E +G+ I P INA GR+
Sbjct: 230 LVPLKGENRAIAKKGLVKLRTSKRPGVIALCKAANAQMNEITEETVGFAIAPRINAIGRL 289

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368
           G+++    L++S+D +E   +A +++ +N  RR + + M ++A   V  +      +
Sbjct: 290 GDADPAVDLMLSEDMEESMAIAQEINGINDERRSIVTEMTQEAIEMVENEFPLTHNS 346


>gi|75907048|ref|YP_321344.1| exonuclease RecJ [Anabaena variabilis ATCC 29413]
 gi|75700773|gb|ABA20449.1| putative exonuclease, RecJ-like protein [Anabaena variabilis ATCC
           29413]
          Length = 772

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 151/612 (24%), Positives = 254/612 (41%), Gaps = 57/612 (9%)

Query: 17  RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMP 70
           +W+    ++     +   QK+      I    A++L  R +  +     F+N        
Sbjct: 2   QWIITATEQPPEWFIQAVQKYAATSKGI--YAAQLLWQRGIKQESQLAAFINFKTYQPAS 59

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127
                 +   A  R+ QA    EKI I+GD+D DG  + A++   L          + YI
Sbjct: 60  AFEFGQEIQLAVARLQQARNKGEKIAIWGDFDADGITATAVLWDGLGQFFQQHQQLDYYI 119

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R+ + +G N + +     +G  LI+T D GST+ D + YA   GID+IV DHH +  E
Sbjct: 120 PNRLKESHGLNEAGIANLAKQGCTLIVTCDTGSTNIDEIIYAQKLGIDIIVTDHHTLPPE 179

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
             P  A++NP  L +     HL   GV + ++  +Y+ L    + P    L  LLDLVA+
Sbjct: 180 RPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNP----LEDLLDLVAV 235

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGY 299
             + D+V L G  R     G+   +         +  PG+  L+E    S      ++ +
Sbjct: 236 GLIADLVQLSGDCRYLAQLGIQRLQADFQQPPAARRRPGVGRLLELCQRSGD-RPTDISF 294

Query: 300 MIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
            +GP INA  R  G+++    LL S D      LA   ++ N  R+ ++  +  Q   K+
Sbjct: 295 GLGPRINAVSRIQGDASFCVELLTSRDINRCHQLAEVTELANTRRKSLQKDVQAQVTQKL 354

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE--------DGKGI 410
                D+   SVIV+E  +W  G++GL+A ++ ++ GRP+  +S E              
Sbjct: 355 TQL--DLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGLENEQDSSPSLAR 412

Query: 411 GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
           GS RS+   D+ ++V    +  +L + GGH  AAGL++   N         +     + +
Sbjct: 413 GSARSVNSVDLYQLVK--HQAHLLHRFGGHPFAAGLSLLAQNIPLFTQAINQQLRQTLGS 470

Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ------SIRVV 524
           +  TP  + D  +  + +   L   L+   P G GNP P     N   +           
Sbjct: 471 VNLTPTVQADIAVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDSQ 530

Query: 525 NLA--HLQMTF---ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
                +++  F   +         I +  Y   L          R      L  N +   
Sbjct: 531 GKKVQYIKAEFDIRDDSSKNPFPGIWWGHYKDELP-------IGRCDCIAELDYNTF--K 581

Query: 580 KRCQLRVLDASP 591
           KR ++R++   P
Sbjct: 582 KRYEIRLIAVRP 593


>gi|224418241|ref|ZP_03656247.1| putative single-stranded-DNA-specific exonuclease [Helicobacter
           canadensis MIT 98-5491]
 gi|253827566|ref|ZP_04870451.1| RecJ exonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313141774|ref|ZP_07803967.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter
           canadensis MIT 98-5491]
 gi|253510972|gb|EES89631.1| RecJ exonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313130805|gb|EFR48422.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter
           canadensis MIT 98-5491]
          Length = 526

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 156/537 (29%), Positives = 257/537 (47%), Gaps = 35/537 (6%)

Query: 52  VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL 111
           +S   A + LN  ++ L P P  L +  + A++IVQAI   +KI + GDYDVDG  S A+
Sbjct: 21  ISRFSAMEILN--LQNL-PLPSALNNLPQIAKKIVQAIKEQKKIAVVGDYDVDGVVSCAI 77

Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171
           +  F      +  + IP+R  DGYG + +L+EK       +IIT D G  + +A +    
Sbjct: 78  LQDFFKRIPYSILVVIPNRFSDGYGISSALVEKI---DCDMIITADNGINAIEAAEVCKK 134

Query: 172 QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK 231
           +GI++I+ DHH    E +P   + NP    +   +  +C A V + +   I + +     
Sbjct: 135 KGIELIITDHH-TPQEILPDALICNPKISPN-FPESEICGACVAWYLCAAIKQEMNLK-- 190

Query: 232 VPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP 291
                 ++  LDL+ALA V DV+PL G+N   + KGL +  +     L  L E      P
Sbjct: 191 ----VSMVEFLDLLALAIVSDVMPLRGMNWVLLKKGLEILGQNRRVSLSLLREHFK-KYP 245

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           + A+ LGY   P +N  GRIG + L  + LI +DS+    +  +L  LN+ R+ M++ + 
Sbjct: 246 LNAQLLGYYFVPLLNCAGRIGSAELAYQFLIQNDSKAAYQILEELLELNRQRKAMQNQVF 305

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
            +A+   + Q ++ +    +VV    W+ G++G++AA+L E+F +PS  ++  E GK  G
Sbjct: 306 LEAKEDFMHQ-ENFEALPFVVVYNPTWNEGVIGIVAAKLCEEFAKPSIVLTNNE-GKLKG 363

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S RS     I  + + A  +  L   GGH  AAGL + + NF    +        I    
Sbjct: 364 SMRSNG---IDCVETLAKHKEFLENFGGHFKAAGLGLLQENFEVFKEALMNM--EICSEQ 418

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531
                    G+L    +N+ +  +L    PYG GN  P FA    K+ S+++    + ++
Sbjct: 419 KIQNDVL--GILPLQKINLEIFRILNEFEPYGEGNAMPKFATR-AKVLSVKLFGDNNSKI 475

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
             E QD  T +A+ F        E L     + + +   L  + +  S    L++ D
Sbjct: 476 LLE-QDGITKEALKF-------SENLQGYENQEIELIYSLQWDRF--SSNVILKIED 522


>gi|195953709|ref|YP_002121999.1| single-stranded-DNA-specific exonuclease RecJ [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933321|gb|ACG58021.1| single-stranded-DNA-specific exonuclease RecJ [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 557

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 143/546 (26%), Positives = 263/546 (48%), Gaps = 51/546 (9%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L  RN++I+     L+  ++  +P   +L + ++A  R+V+AI + E+I+++GDYDVDG
Sbjct: 32  LLGLRNINIED----LDVKLKN-IPSFELLPNINQAVDRLVKAIKSKERILLYGDYDVDG 86

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S  +M  FL     N    +P+R   GYG +  +++ F ++ + L++T+D G+T+   
Sbjct: 87  VTSTTIMYDFLKQIGANVVPVLPNRNS-GYGLSKEIIDLF-SKYSNLVLTLDNGTTAVHE 144

Query: 166 LQYATNQ-GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
            +YA  +  +D I++DHH +   E    A++    L+  +    LC AG+ F ++  + R
Sbjct: 145 TKYAKEKYNMDFIILDHHMINHGEHLPEAILVNPNLEKDNKLKGLCTAGLSFYMVGALRR 204

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
            L  D      FD+   LDLVA+ TV DV+P+  LNR  + KGL +  +  +       +
Sbjct: 205 ALGVD------FDIKKYLDLVAVGTVADVMPINSLNRVLISKGLELINKIKDMPWDMATD 258

Query: 285 ----------------RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
                           +      ITA+++G+ I P INA GRI +  +  +LL   + ++
Sbjct: 259 FGKAGMKALINYISKTQNGNQKIITAKDIGFSIAPRINAAGRIRKPQIALKLLAEKNYEK 318

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
             +LA  L+ +NQ+RR + + M ++A +              +++    WH G++G++A 
Sbjct: 319 ARILAEDLNKINQDRRRISNEMFKEAYSLA-----SQSNDDFVILGKQTWHHGVLGIVAG 373

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448
           RL  K  +P+           +GS RS+EG D+ K++S         K GGHA AAG+T+
Sbjct: 374 RLSNKLKKPTGIFHINNTH-AVGSIRSVEGLDVHKLLSNLSYM--FDKWGGHAGAAGVTI 430

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
           ++  F                 +    V ++D  L   +V+  + +++E   PYG  NP 
Sbjct: 431 KKEYFDAFRQKINDLLKRESFEVD--RVLEVDMELPLRSVDKRIGEIIEKLSPYGELNPE 488

Query: 509 PVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P+F   +  +   S + V    +++    +D + ++   F         F+    G+R+ 
Sbjct: 489 PIFISQDITVSSISSKGVG---VRVKTLDKD-KEVELSCF-----EEELFVKLRPGQRLK 539

Query: 567 VTGHLC 572
              ++ 
Sbjct: 540 AIYNID 545


>gi|241858964|ref|XP_002416167.1| single-stranded-DNA-specific exonuclease RecJ, putative [Ixodes
           scapularis]
 gi|215510381|gb|EEC19834.1| single-stranded-DNA-specific exonuclease RecJ, putative [Ixodes
           scapularis]
          Length = 415

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 211/426 (49%), Gaps = 20/426 (4%)

Query: 171 NQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN 230
             G+ V+V DHH    E   A A+VNPN+        +L   GV+F +++ +   LRQ  
Sbjct: 1   MAGMKVLVTDHHLPGDELPDALAIVNPNQPGCEFPSKNLAGVGVIFYLMLALRAELRQRG 60

Query: 231 KVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG-LKALIERVN 287
               N    L  L DLVAL TV DVV L   NR  V +GL   R+      L+AL +   
Sbjct: 61  VYEANAGPRLNELADLVALGTVADVVSLDANNRLIVTQGLERMRKGQMQAGLRALFQVAG 120

Query: 288 ISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
                 +A +LG+ +GP INA GR+ +  LG R LI+DD  E   LA +L+ +NQ+RR +
Sbjct: 121 RDPRQASAFDLGFALGPRINAAGRLADMALGIRCLITDDEDEAANLARELEDMNQDRRSI 180

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
           E +M E+A      +  +   ++ + V    WH GIVGL+A+RLKEK+ RP+ A +  ++
Sbjct: 181 EQSMREEALRAA--ELAEPDTSATVCVFHPEWHQGIVGLVASRLKEKYWRPTLAFAQGDE 238

Query: 407 GKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
           G+  GSGRSI    +   +        G+++K GGHAMAAGLT+E  N+      F++  
Sbjct: 239 GEIKGSGRSIPDVHLRDALDLVSKRYPGLILKFGGHAMAAGLTIEEDNYDVFVQAFEEAV 298

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
             +       P+ + DG L    +NI +  +L+    +GAG P PVF   N  ++  R++
Sbjct: 299 QELTGRYQFDPIIETDGSLEPEHINITVAGLLQK-QVWGAGFPAPVFR-DNFFVRQQRLL 356

Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584
              HL+++ E ++ E   AI F                + +     L  N W G+   Q 
Sbjct: 357 KNKHLKLSLE-RNGEYFDAIWFNRDTL---------LPENIEAAYRLDQNEWNGNVSVQF 406

Query: 585 RVLDAS 590
            +  A 
Sbjct: 407 IIEYAQ 412


>gi|32266850|ref|NP_860882.1| single-stranded DNA-specific exonuclease [Helicobacter hepaticus
           ATCC 51449]
 gi|32262902|gb|AAP77948.1| single-stranded DNA-specific exonuclease [Helicobacter hepaticus
           ATCC 51449]
          Length = 522

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 145/528 (27%), Positives = 254/528 (48%), Gaps = 39/528 (7%)

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-N 122
           ++R L P P  LT     A+++V+ +   ++I++ GDYD DG  + ALM RF        
Sbjct: 24  TLRDL-PKPDSLTHALTGAQKVVECMNKGQEILVVGDYDADGICASALMCRFFERLGYEK 82

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
             + IP R +DGYG + +L+EK+ N  A ++++VD G  ++ A  +     I  I+ DHH
Sbjct: 83  FRLVIPHRFIDGYGVSAALLEKYAN-NASIVVSVDNGINAFCAGDWCKEHNIVFIITDHH 141

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
              +    A  +++P   D    Q  +C A V +     I +IL          D+   L
Sbjct: 142 TPANTLPQADVIIDPYMADCSFIQKSICGAVVAWYFCAAIKQILGAS------IDMGEFL 195

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           + +ALA++ D++PL+G+NR  V KG+   R   +P    +  ++     I AENL + I 
Sbjct: 196 EYLALASIADIMPLVGINRILVKKGIERLRNSSSPLALLIRSKLKT---INAENLAFSIV 252

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +N  GR+  +NL    L++    +   +  KL  LN  R+ ++S +L  A      Q 
Sbjct: 253 PLLNCAGRMANANLALDFLLAPSVVDALRIYDKLFELNVQRKSVQSEILSLA------QM 306

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            +I+   +IV  G+ WH G++G++A+ L ++ G+ +F +S+  +G   GSGRS  G ++ 
Sbjct: 307 PNIESEHIIVSYGEDWHEGVLGIVASSLAQEKGKSAFVLSY-SNGILKGSGRSFGGLNL- 364

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            + S       L++ GGH+ A G+++E        +  +                 I GV
Sbjct: 365 -IASITPLSKHLLRFGGHSGAVGISLELEQLEGFINALESAL-----IFDDIKENAILGV 418

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSE 539
           + ++++N  L+ + E   P+G GNP P+F   N ++QS++ +     HL      + +  
Sbjct: 419 IESASINEELLAICERFEPFGEGNPKPIFLCENLQIQSLKPLGRDKKHLSYILNDKSNGV 478

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQL 584
            L+AI F V         M+  G+  +V   L  + +    +    Q 
Sbjct: 479 LLEAIEFFVPQ-------MREIGQSGNVQFELMRDDYNNKVKMKILQF 519


>gi|282896574|ref|ZP_06304592.1| RecJ exonuclease [Raphidiopsis brookii D9]
 gi|281198516|gb|EFA73399.1| RecJ exonuclease [Raphidiopsis brookii D9]
          Length = 796

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 154/620 (24%), Positives = 263/620 (42%), Gaps = 66/620 (10%)

Query: 17  RWVSLLGQEGINRAL-AITQKHAI-------PDIVARVLVNRNVSID-YAKDFLNPSIRL 67
           +W+ L   E     L A+ +++ +        + VA++L  R +  +    +FL+   + 
Sbjct: 2   KWILLESIEIPQDFLQAVQKEYHVRHGSKSKANFVAQILWQRGIRTELELVNFLD--FKN 59

Query: 68  LMP-DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN- 124
             P  P     + + A  R+  A    EK+ I+GD+D DG  S AL+   L         
Sbjct: 60  YRPASPFEFGEEMNLAVNRLKAAAILKEKVGIWGDFDADGITSTALLWDGLGEFFPQYEQ 119

Query: 125 --MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
              YIP+R+ + +G N + +E+   +G +LI+T D GST+ D + YA   GID+IV DHH
Sbjct: 120 LTYYIPNRLTESHGLNFAGIERLAQQGCRLIVTCDTGSTNIDEIIYAQKLGIDLIVTDHH 179

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
            + +E  P  A++NP  L +     HL    V + ++  +Y  L    + P    L  LL
Sbjct: 180 TLPTERPPVTAIINPRYLPETHSLFHLSGVAVAYKLVEALYETLPDIPQNP----LEDLL 235

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGL--------MVARRQGNPGLKALIERVNISSPITA 294
           DLVA+  + D+V L G  R     G+                PG+K L+E    +    A
Sbjct: 236 DLVAIGLIADLVQLKGDCRYLAQIGIDKLHQESKKDISHSRRPGIKKLLELCRKNGD-RA 294

Query: 295 ENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            ++ + +GP INA  R  G+ +    LL S D +    LA + ++ N  R+ ++  + EQ
Sbjct: 295 MDISFGLGPRINAVSRIHGDGSFCVELLTSRDIKRCCQLAQETELANSRRKSLQKDVQEQ 354

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--- 410
           A  K+     D+   +VIV+   +W  G++GL+A ++ ++ G+P+  +S +  G      
Sbjct: 355 AIKKLGKL--DLSTTNVIVLVDSQWPGGVLGLVAGQIAQETGKPTILLSTDPLGTEKAES 412

Query: 411 ---------GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                    GS RSI   D+ ++V    +  +L + GGH  AAGL++   N     D   
Sbjct: 413 LDSKTNLARGSARSINSIDLYQLVQK--QAHLLHRFGGHPFAAGLSLSVENIELFTDAIN 470

Query: 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI 521
           +     V  +      + D V+  + +   L   L+   P G GNP P     N   ++I
Sbjct: 471 QQFRLSVGGINLISKMQADLVVTVADLGRELFLELKLLEPCGMGNPVPKLLIKNCWFENI 530

Query: 522 ----------RVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
                       +     Q       S+     I +      L          +      
Sbjct: 531 SYHNLQDSRGNKIQYNKTQFVLRDDSSQKGFPGIWWGHNKNDLPR-------GKCDCIME 583

Query: 571 LCVNYWRGSKRCQLRVLDAS 590
           +  N     +  ++R++D  
Sbjct: 584 IDFN--MLREEHEVRLIDVR 601


>gi|237752977|ref|ZP_04583457.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375244|gb|EEO25335.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 533

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 148/545 (27%), Positives = 251/545 (46%), Gaps = 37/545 (6%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +L  R    +  K     S++ L P P  L +  + A RI  AI   ++I++ GDYDVDG
Sbjct: 24  LLKQR-FDKEEIK-----SLKDL-PKPEKLKNLLEIAGRIKLAIDTKKRIVVVGDYDVDG 76

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
             S A++  F         + IP+R  DGYG + S++ +       +IITVD G  + +A
Sbjct: 77  VVSCAILHAFFKKLQYPILVEIPNRFSDGYGLSKSVISRL---DCDVIITVDNGINAIEA 133

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
            +   N+GI++++ DHH    E +P   + NP    D   +  +C A V + +   + ++
Sbjct: 134 AEICKNRGIELLITDHH-TPQEILPNALICNPKLSKD-FPEPEICGACVAWYLCAALKQV 191

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           +  D        +   LDL+ALA V DV+PL+G+NR  + KGL V +         L ER
Sbjct: 192 MGID------VAMGDFLDLLALAIVSDVMPLLGMNRVLLKKGLEVLKSSQRTAFIHLKER 245

Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
                 I  + + Y I P +N  GR+  + L  R LI++D  + + L  KL  +N  R+ 
Sbjct: 246 F-CKYKIDGQLISYYIAPLLNCAGRMDSAMLAYRFLITEDKVDSKKLLEKLLSINTERKE 304

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
           +++ +  +A+     Q  + Q+  VI+V    WH GIVG++AARL E+F +P   +S ++
Sbjct: 305 LQNIIYTEAKESFCKQ-KNYQKLPVILVYSPSWHEGIVGIIAARLSEEFCKPCIVLS-QK 362

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
           +G   GS RS        M         LV  GGH  AAGL++++ +             
Sbjct: 363 NGILKGSMRSSYTD---CMEVLESTREHLVAFGGHFGAAGLSLKKESLEAFKKAL--MCF 417

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525
           N     + +   +  G L  S V      M++S  P+G  N  P F     K+ ++R   
Sbjct: 418 NYKQERMESNFSEALGYLPLSVVGKEFFAMIQSFEPFGCANAIPKFYTK-AKIVNVRYFG 476

Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
             H ++  + +     +A+ F          L +++ + +    +L  + +R  +   L 
Sbjct: 477 EKHSRIILK-EGITKCEAVVFNKD-------LREAQDREIACLYYLQWDNYR--QDVVLH 526

Query: 586 VLDAS 590
           +   +
Sbjct: 527 LEHYA 531


>gi|119510117|ref|ZP_01629256.1| single-strand-DNA-specific exonuclease [Nodularia spumigena
           CCY9414]
 gi|119465178|gb|EAW46076.1| single-strand-DNA-specific exonuclease [Nodularia spumigena
           CCY9414]
          Length = 780

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 147/611 (24%), Positives = 252/611 (41%), Gaps = 58/611 (9%)

Query: 17  RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73
           +W+    ++  +  + I +++   ++    A++L  R +                   P 
Sbjct: 2   QWIIETPEKPPDWFIQIVKQYTPASMGLYAAQLLWQRGIKDKQKLAAFTDYKTYQPASPF 61

Query: 74  IL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIPD 129
               +   A  R+ QA  N++KI I+GD+D DG  + A++   L      +     YIP+
Sbjct: 62  EFGAEMQLAMERLQQARNNNDKIAIWGDFDADGITATAVLWDGLGQFFEQNTQLTYYIPN 121

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           R+ + +G N   ++    +G +LI+T D GST+ + + YA   GIDVIV DHH +  E  
Sbjct: 122 RLKESHGLNYPGIDNLQKQGCKLIVTCDTGSTNINEIIYAQKLGIDVIVTDHHTLPEERP 181

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           P  A++NP  L       H     V F ++  +Y  L    + P    L  LLDLVA+  
Sbjct: 182 PVTAIINPRYLPSEHQLFHFSGVAVAFKLIEALYLTLPNVPQNP----LTDLLDLVAVGL 237

Query: 250 VCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGYMI 301
           + D+V L G  R     G+   +         +  PG+  L+E    +      ++ + +
Sbjct: 238 IADLVQLSGDCRYLAQLGIQKLQADFQQPVTARRRPGIGRLLELCQKNGD-RPTDISFGL 296

Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           GP INA  R  G+++    LL S D +    LA   ++ N  R+ ++  +  Q   K+  
Sbjct: 297 GPRINAVSRIQGDASFCVELLTSRDLKHCHQLAEFTELANTRRKSVQKDVQAQVAQKLTQ 356

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK------------ 408
              D+   SVIV+E  +W  G++GL+A ++ ++ GRP+  +S EE  +            
Sbjct: 357 L--DLSTTSVIVLEDSQWPAGVLGLVAGQIAQETGRPTILLSTEERTQGTTPTPYSPLPT 414

Query: 409 ---GIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
                GS RS+   D+ ++V    +  +L   GGH  AAGL++   N     D   +   
Sbjct: 415 PLLARGSARSVNFVDLYQLVKK--QAHLLNSFGGHPFAAGLSLLPENIPLFTDAINQQLR 472

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR--- 522
             +     TP  + D  +  + +   L   L+   P G GNP P     N   ++ R   
Sbjct: 473 QTLGGTTLTPTVQADLTVTVADLGKELFLELKLLEPCGMGNPVPKLLIKNCWFENSRHRN 532

Query: 523 ---VVNLA--HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
                     +++  F  +D   +     I +  Y   L          R      L  N
Sbjct: 533 QQDWKGKKVQYIKTDFNIRDESTNSPFPGIWWGHYKDELPL-------GRCDCIAELDYN 585

Query: 575 YWRGSKRCQLR 585
            +      +L 
Sbjct: 586 TFNKRYEIRLI 596


>gi|167004725|ref|ZP_02270483.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 453

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 122/480 (25%), Positives = 233/480 (48%), Gaps = 30/480 (6%)

Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171
           M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  + +A +    
Sbjct: 1   MAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAALEAAKLCKE 57

Query: 172 QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK 231
           + ID+I+ DHH  +     A+A++NP + D    +  +C A V + ++  +  + +    
Sbjct: 58  KNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAALKEVCKLK-- 115

Query: 232 VPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP 291
               +D+   L+L+A+A V D++ L  LNRA V +G+    +      +A+ +       
Sbjct: 116 ----YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI-KHYYQKDK 170

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
              +N+G++I P IN+ GR+ ++++    L + D  +      ++   N++R+  E  + 
Sbjct: 171 FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLF 230

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
           E +  ++       +  S IVV G  WH G++G++A+RL + F +P+F  S  E+    G
Sbjct: 231 EDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNEEHL-KG 283

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471
           S RS+   DI  ++S      IL   GGH  AAG+++   NF +  +  +K    I  + 
Sbjct: 284 SARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISESE 341

Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHL 529
                 +I G+L  S ++  ++++LES  P+G  NP P F   N  +++ +++     HL
Sbjct: 342 FL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHL 400

Query: 530 QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           ++   +++++T++A+ F     P          + + + G +  N +RG    Q  + + 
Sbjct: 401 KLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMVTPQFVIKEI 452


>gi|224438087|ref|ZP_03659026.1| single-stranded DNA-specific exonuclease [Helicobacter cinaedi CCUG
           18818]
 gi|313144531|ref|ZP_07806724.1| single-stranded DNA-specific exonuclease [Helicobacter cinaedi CCUG
           18818]
 gi|313129562|gb|EFR47179.1| single-stranded DNA-specific exonuclease [Helicobacter cinaedi CCUG
           18818]
          Length = 530

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 148/537 (27%), Positives = 245/537 (45%), Gaps = 39/537 (7%)

Query: 53  SIDYAKDFL-----NPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +      FL        IR L  +P P  L + +  A+ I QA+  + +I++ GDYD DG
Sbjct: 10  TKQDILHFLQSRDLECGIRTLRDLPTPQNLNNTESGAKIITQAMERNNEILVVGDYDADG 69

Query: 106 AASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
             + A++  F       +  + IP R  DGYG + +L+EK     A ++++VD G T++ 
Sbjct: 70  VCASAIISLFFKALEYQHFRLIIPHRFEDGYGVSAALLEKNAQ-NAAVVVSVDNGITAFC 128

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
           A Q+   +GI  I+ DHH        A  ++NP   D    Q  +C A V +     I +
Sbjct: 129 AGQWCKAKGIPFIITDHHTPTDTLPQADVIINPMLQDSTFTQKSICGAVVAWYFCAAIKQ 188

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
            L+ +       D+   L+ +A+AT+ DV+PL G+NR  V KGL   R   N     L E
Sbjct: 189 NLKAN------IDMGMFLEYLAIATIADVMPLTGINRILVKKGLESLRTSSNVLATLLRE 242

Query: 285 RV-NISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
                  PITAENL +   P +N  GR+  +N    LL+S        +  +L  LN  R
Sbjct: 243 SFARFKKPITAENLAFDFIPLLNCAGRMESANKALELLLSPSLAHATHIYTELQNLNNKR 302

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           + ++  +L++A+  +      IQ    ++  GD WH G++G++AA+L   + + +F +S 
Sbjct: 303 KEIQQDILQKAQEHI------IQTDDFVLSYGDSWHEGVLGIVAAKLARIYKKSAFVLS- 355

Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
           +      GSGRS  G ++  + S    +   +  GGH+ A GL++E      L +  Q+ 
Sbjct: 356 QNADVLKGSGRSYGGANL--IASITPLQQYCLGLGGHSGAVGLSLESCQLWTLIEKLQET 413

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
              +         F     L   +V++ L ++LES  P+G GNP P F   N  +Q I+ 
Sbjct: 414 M--VYEECDENETFFT---LGVKSVDMELFEILESFEPFGEGNPKPTFLLENLTIQEIKP 468

Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578
           +     H + T    +   L        G        +  G+ + +   L  +Y++ 
Sbjct: 469 LGREGKHFEYTLADSNGMCL-------AGLEFLAPTRREVGQCVDIHIELMRDYYKN 518


>gi|120536991|ref|YP_957049.1| phosphoesterase domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120326825|gb|ABM21134.1| phosphoesterase, RecJ domain protein [Marinobacter aquaeolei VT8]
          Length = 660

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/625 (25%), Positives = 252/625 (40%), Gaps = 92/625 (14%)

Query: 46  VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           +  NR  S            + L+  P +LTD  KAA R+  A+   + I+   D+D DG
Sbjct: 40  IFANRGASYPETYH-----PKHLV-SPTLLTDALKAAVRLSDALLEGQTIICVADFDCDG 93

Query: 106 AASVAL----MMRF------LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLII 154
           A   A+    M RF            + +  IPDR   GYG  P L E  I      +I+
Sbjct: 94  ATGAAIFNRCMKRFADTLAAFRMPKASLHTVIPDRFRYGYGLKPRLAEDKIKPLYPDVIV 153

Query: 155 TVDCGSTSYDALQYATNQGI----------DVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
           T+D G +S+DA+   +              DVI+ DHH        A+A+VNPNR D   
Sbjct: 154 TIDNGISSHDAVTRISQWQGVSSANPNGAPDVIITDHHAQGETLPTAFAVVNPNRKDCPF 213

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF----------DLLSLLDLVALATVCDVV 254
               L   GV F +++L+ + L    K                +    DLVA+ T+ D+V
Sbjct: 214 PSKALAGCGVAFYMMLLVRQTLISRLKRNSRTSAAAGGIAAVQINHFADLVAVGTIGDMV 273

Query: 255 PLIGLNRAY-------VVKGLMVARRQGN------PGLKALIERVNISSPITAENLGYMI 301
           P+   NR         + KGL +  R+ +       G++AL+E  N+S P+TA ++ + +
Sbjct: 274 PMDLNNRIMVKVGLDRINKGLQMPARKAHLDGYLSFGVRALLEAANVSYPVTASDIAFQV 333

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQA-EAKVLT 360
            P INA GR+     G   L+S+      + A +   LN+ R+ ++  M ++A EA    
Sbjct: 334 VPRINAVGRLETPTAGIECLLSETQMMAGIEADRCHKLNEERKSVQRTMQQEADEALASL 393

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE--------------ED 406
                 +   +V+    WHPGIVGL+A+ +KE+        + E              + 
Sbjct: 394 SDTPDTETPCVVLHNPSWHPGIVGLVASGIKERTKGAVICFAPEGDPNAKPGTPEADGDP 453

Query: 407 GKGIGSGRSIEGFDIGK--MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
               GSGRS +   +        A    ++++ GGHA AAGL++ +    R    F K  
Sbjct: 454 DWLKGSGRS-DNVHLRDTLAFVAAQAPDLMMQFGGHARAAGLSLHKTELNRFKRLFAKAV 512

Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
            + + A         DG L A   + A    +E   P+G   P P F   N K+     V
Sbjct: 513 EHSLTAAPLVNPVYADGALPAHLRDHAFAAWIER-QPWGNLFPEPTF-TQNFKVIRAAGV 570

Query: 525 NLAHLQMTFE----------SQDSETL-------QAI---AFRVYGTPLGEFLMQSRGKR 564
             AH ++              Q+  T+       +AI    F        +    + G  
Sbjct: 571 GTAHQKLLVMDADEQPLSNTDQNGTTIYPVSHGAKAIPMLWFFSRDEENPD--TVAPGSA 628

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDA 589
           + VT  L +N +RG    Q      
Sbjct: 629 VRVTYTLTINRFRGQNEIQAIAKSI 653


>gi|303232839|ref|ZP_07319523.1| putative single-stranded-DNA-specific exonuclease RecJ [Atopobium
           vaginae PB189-T1-4]
 gi|302481029|gb|EFL44105.1| putative single-stranded-DNA-specific exonuclease RecJ [Atopobium
           vaginae PB189-T1-4]
          Length = 435

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 127/435 (29%), Positives = 203/435 (46%), Gaps = 18/435 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           RW  L           + +   +P +VARVLV+R  S     + +L+  I     DP  +
Sbjct: 10  RWTILPQSSNEE--TTLMRACNLPRLVARVLVSRGKSDPYDVQTYLSADIERDWEDPYCI 67

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
                A +RI  A+   E+I +FGD+DVDG  S  L+ + L+        +IP+R  +GY
Sbjct: 68  PGMHAAVQRIRAALKAHERIAVFGDFDVDGITSTCLLTQALTALGATVTPFIPNRTHEGY 127

Query: 136 GPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G + + + + +NE   QLIITVD G ++   +++  ++GIDV+V DHH+  +       +
Sbjct: 128 GLSVAALTRLLNETPAQLIITVDNGISAASEVEWLRSRGIDVVVTDHHEPDNLVPAIDEV 187

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            NP  LD       L   GV   ++  +                   L+  AL T+ D++
Sbjct: 188 CNPK-LDVTCPSYDLAGVGVALKLVCALGAACG------NPSLWKDYLEFAALGTLADMM 240

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313
            L   NRA V  GL        PGL AL     I    +T+E L + + P +NA GR+  
Sbjct: 241 ELTCENRAIVTAGLERLHYTRTPGLLALARVSGIDIHSVTSEELPFSLIPRLNAAGRMDS 300

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
           + L   +L +D   +   LA +L+ +N  R+  E+ + +QA  +        +   V+VV
Sbjct: 301 TMLAYHVLCADRLSDAFSLASQLEAVNTLRKEKEAEVTKQALEQAERM---YKNERVLVV 357

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
            G  W  G+ G++AARL+ ++  P    S ++ G   GSGR+    D+   V       +
Sbjct: 358 AGVDWAEGVKGIVAARLQRRYHVPCIVCSIQD-GVAKGSGRTAGSIDLFAAVQSC--SDV 414

Query: 434 LVKGGGHAMAAGLTV 448
           L + GGH  A G+T 
Sbjct: 415 LERFGGHQGAVGITC 429


>gi|309807701|ref|ZP_07701640.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169075|gb|EFO71154.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Lactobacillus iners LactinV 01V1-a]
          Length = 539

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 228/469 (48%), Gaps = 28/469 (5%)

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
            +IP+R  DGYGP+    ++ ++ G +LIITVD G T  + + YA   G+D IV DHH  
Sbjct: 4   FFIPNRFDDGYGPSLERYQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIF 63

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
           + E   AYA+V+ N  +        C AGV + +   +           +  ++  LLDL
Sbjct: 64  QDEIPDAYAIVHCNYPNQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDL 112

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303
             + T+ D+V + G     V +GL +      PGL+ALI+   +    I A ++G+ I P
Sbjct: 113 AMIGTIGDMVKVSGEGHIIVKQGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICP 172

Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363
            INA GR+ ++NL   LL+ DD +E E LA  ++ LN  R+ +   + E  E ++  Q  
Sbjct: 173 RINAVGRLADANLAVNLLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQY 230

Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
             Q    +V+    +H G++GL+  ++ EK+ +P+  ++  ++G+  GSGRS+ GF++  
Sbjct: 231 GWQSKKTLVLYDHNFHEGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFN 290

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
            +       +L K GGH  A GL++++ +  +L D F+     +  + +       D  L
Sbjct: 291 ALIKLKGT-VLTKFGGHEFACGLSLKKDSLVKLRDCFESSFQPVATSELVK---MYDDEL 346

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541
           N + + +     +   GP+G  NP PVF+  N  +  +  +     H++M   +  +E L
Sbjct: 347 NLNDLTLDTYRQMVKVGPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-L 405

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589
             I F         +L  +    +H+    L +N W    + Q  + D 
Sbjct: 406 DLIGFDRS------YLDTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 448


>gi|326790449|ref|YP_004308270.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           lentocellum DSM 5427]
 gi|326541213|gb|ADZ83072.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           lentocellum DSM 5427]
          Length = 557

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 153/510 (30%), Positives = 232/510 (45%), Gaps = 21/510 (4%)

Query: 23  GQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
            +E       ++  + + D VA ++  RN  ++D  K+++  + R        L D +KA
Sbjct: 13  TKEEQCVIDEVSSTYKLYDFVAAIICMRNAFNLDEIKEYILGTTRP--KSYKGLKDIEKA 70

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPS 140
              I ++I  +EKI I GDYDVDG  S  +++      +  + + Y+P R  DGYG NP 
Sbjct: 71  ISLITESISLNEKIRIVGDYDVDGVTSTYVLLTVFEALNYPHISHYLPVREKDGYGLNPD 130

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200
           ++     +G  L+ITVD G ++ +A+  A   G+ VIV DHH++ +E   A A++NP+++
Sbjct: 131 IVANAHADGVSLLITVDNGISAVEAVASAKELGMKVIVTDHHELPNELPIADAIINPHQV 190

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
           D       L   G+ + +   +    +      L   +     LVAL TVCDV PL+G N
Sbjct: 191 DCDYPYKSLAGVGIAYKLGQALISHFKLKPAPALVARIQ---GLVALGTVCDVAPLVGEN 247

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
           R  V  GL    +        L     I+S I+   LG+ IGP +NA GR+  +      
Sbjct: 248 RHMVKTGLGALNKGA------LPAATMINSRISVGTLGFQIGPRLNACGRLESAETALEY 301

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L + D   L     +LD LN+ R+  E   + +  AKV           +I+   +  H 
Sbjct: 302 LRTTDPNTLYPFKQRLDSLNKERQDEEMDSIARVNAKVEAMTT---LPDIIIDIDEMAHE 358

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
            +VGL+A R+KEK+ RP+   S    G   GSGRSIE +D+    SF     +L  GGGH
Sbjct: 359 SVVGLVAGRIKEKYYRPTVVFSRTIHGTYKGSGRSIEEYDM--FQSFKPFLHLLDGGGGH 416

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL-NASAVNI-ALIDMLES 498
            MA GL    V            A + +     TP   +D  + NA   +   L   L  
Sbjct: 417 PMACGLKASTVEQIHAFAKAVNEASS-LTEHDKTPKIYVDKCIYNAYEYDFNELEKQLRL 475

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH 528
             P GAGN  P     +  L+        H
Sbjct: 476 FLPTGAGNSAPTLLIKDASLKFNTKYAKNH 505


>gi|310830477|ref|YP_003965578.1| Single-stranded-DNA-specific exonuclease recj [Paenibacillus
           polymyxa SC2]
 gi|309249944|gb|ADO59510.1| Single-stranded-DNA-specific exonuclease recj [Paenibacillus
           polymyxa SC2]
          Length = 481

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 130/491 (26%), Positives = 215/491 (43%), Gaps = 31/491 (6%)

Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA--QLIITVDCGSTSYDALQYA 169
           M   L         +  +R + GYG  P+ ++  +      QLI+TVD G +++  + YA
Sbjct: 1   MTELLQKAGAKVAFFTNNRFIHGYGLCPTGVDDMLAMYPETQLIVTVDNGISAFAGIDYA 60

Query: 170 TNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQD 229
            + G+ V+V DHH        A A+V+P R D       LC AGV F +++L+Y  +  D
Sbjct: 61  KSLGLKVVVTDHHDPGESIPNADAVVDPKRHDCEYPFKGLCGAGVAFKLMLLLYWTMDLD 120

Query: 230 NKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS 289
                   +   LD+VAL+TV DVVPLI  NR  V  G+   + +     +       + 
Sbjct: 121 -----LSTVYETLDIVALSTVADVVPLIDENRILVSLGISKIQSEDRAVFRVFRSVTGVK 175

Query: 290 SPITAENLGYMIGPSINAGGRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES 348
                  +G +  P INA GR+ G+      +   DD +++E   + L  +N+ R+ M  
Sbjct: 176 VINAHYTIGMVYAPMINAIGRLDGDPRRAIEMFFEDDEEKIEQTVLYLQQVNELRKKMTV 235

Query: 349 AMLEQAEAKVLTQCDDIQQ---------ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
              EQA A V  + D+              + VV    +H GIVGL+A RLKE + RP F
Sbjct: 236 EQTEQAIAMVEGELDEETGLRKSNGKGLRLINVVYHPDFHEGIVGLIAGRLKEHYNRPFF 295

Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
            ++  E G   GSGR I+GF +         + +L+  GGHA A+GLT++  +     + 
Sbjct: 296 VLTK-EHGLIKGSGRGIDGFHLK--EEMDKIKHLLLGYGGHAKASGLTLKEEHLSDFEEA 352

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
             K A  ++       +++I+ +     +   +++ L+   P+G   P PV A    K+ 
Sbjct: 353 MNKLADGVLTEDHFHKIYRIEHIFEPHELTTDIVEDLKELEPFGEAFPKPVLAVDKFKVD 412

Query: 520 SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577
               +     H+++      S  L  I + +      ++      K +   G+  +N W 
Sbjct: 413 KAFYMGTEKQHIKLK-----SGNLDLIMWGMAE----KYREMGEPKIIKAVGYPDLNIWN 463

Query: 578 GSKRCQLRVLD 588
                Q  V  
Sbjct: 464 NVTTVQFIVDH 474


>gi|46203165|ref|ZP_00051960.2| COG0608: Single-stranded DNA-specific exonuclease [Magnetospirillum
           magnetotacticum MS-1]
          Length = 265

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 117/252 (46%), Positives = 155/252 (61%), Gaps = 3/252 (1%)

Query: 3   DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61
            + FL V  S+ G  W    G  G+   A+ +TQ + +PD+++RVLV R V    A+ +L
Sbjct: 14  PRPFLDVASSVLGRPWRERCGDPGLQALAVTMTQAYGLPDLLSRVLVGRGVRPAEAEAYL 73

Query: 62  NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121
           +P +R LMPDP  L D + A  R+V A+   E++ IFGDYDVDGAAS AL+  +L    V
Sbjct: 74  SPRLRELMPDPSALVDMEAAVDRLVHAVRRREQVAIFGDYDVDGAASAALLAEYLRALGV 133

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
              ++IPDRI +GYGPN   +     EGA L++ VDCG+  ++ L  A   G+DVIV+DH
Sbjct: 134 PVRIHIPDRITEGYGPNVGAVTALREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 193

Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLL 239
           H       P  ALV PNRLDDLSG GHLC+AGVVF+ LV + R LR++   P   +  L 
Sbjct: 194 HGAPEALPPTRALVYPNRLDDLSGLGHLCSAGVVFMTLVALARRLREEGGFPGSADPRLT 253

Query: 240 SLLDLVALATVC 251
             LDLVALATV 
Sbjct: 254 DFLDLVALATVA 265


>gi|108803730|ref|YP_643667.1| phosphoesterase, RecJ-like protein [Rubrobacter xylanophilus DSM
           9941]
 gi|108764973|gb|ABG03855.1| phosphoesterase, RecJ-like protein [Rubrobacter xylanophilus DSM
           9941]
          Length = 546

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 236/580 (40%), Gaps = 49/580 (8%)

Query: 24  QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI---RLLMPDPLILTDCDK 80
           +        + +   + ++ ARVL NR V  + A  FL+PS+        DP        
Sbjct: 2   EPDGELVARLARAAGVGELCARVLANRGVLPEEAAGFLSPSLGSVSAPEEDPWR-----V 56

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140
           AARRI  A+   E+I IFGDYD DG  S A++   LS  + N  + +P R   GYG    
Sbjct: 57  AARRIAAAVRRGERIGIFGDYDTDGITSAAVLRLALSRYTDNLCVRLPVR-QVGYGLLEP 115

Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYALVNPNR 199
            +     +G +L++T DCG ++   ++ A + G+DVIV DHH         A A+++P  
Sbjct: 116 YVRDLFADGVRLLVTADCGVSNRGEVELAASLGMDVIVTDHHIPPQELPAAAVAVLDPKV 175

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
            D           GV + +   + R L           L  LLDLV++ TV D+ PL+G 
Sbjct: 176 WDPEDPL---AGVGVAWKLAWAVARELEGPG---ARRWLGGLLDLVSVGTVVDIAPLVGD 229

Query: 260 NRAYVVKGLMVARR-----QGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           NR     GL    R     +  PGL+AL     +   +  E+LG+ IGP IN+ GR+ + 
Sbjct: 230 NRVLAFAGLKHLNRALSGGRARPGLEALARVAGLRGAVDEEDLGWRIGPRINSIGRLKDP 289

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++ D +E   +A  L+ LN  R+      + +A  +V              V 
Sbjct: 290 GPALDLLLTSDRREALRIASLLNQLNAERQRRTEQAVARALEEV-------DPGQDFKVV 342

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
                 G+ GL+A R+    GRP+  +    DG   GS R+    ++    +      +L
Sbjct: 343 LTEETGGLAGLIAGRVAAATGRPAAVLGRRADGSYGGSARA-GETEVDLYGALLEVGDLL 401

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNASAVNIAL 492
            + GGH  AAGLTV   N                     +  P  ++D  +    V+  L
Sbjct: 402 GEWGGHRKAAGLTVAPGNLDAFVRRVNDAVRRQRAADPELFEPAVEVDAEVGLELVDDGL 461

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +   E   P+G+GN  PVF     ++Q  R +      M+              R     
Sbjct: 462 LVWHERLAPFGSGNYRPVFVAEGLRIQGARELWEG---MSLLRLGGGL------RAKLAC 512

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKR--CQLRVLDAS 590
             E L +           +    +R       ++ +LD  
Sbjct: 513 APEALPE---GPFDAAFTV----YRSRYTGGAEIEILDWR 545


>gi|260891375|ref|ZP_05902638.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           hofstadii F0254]
 gi|260858758|gb|EEX73258.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           hofstadii F0254]
          Length = 475

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 131/426 (30%), Positives = 225/426 (52%), Gaps = 24/426 (5%)

Query: 45  RVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           ++L +R ++ +   ++FLNP +  +  +P  L D +K    I +AI   + I I+GDYDV
Sbjct: 61  KILYSRGITTEKEVREFLNPKLENIQ-NPYGLQDMEKTVLEIEKAIKEQKNIWIYGDYDV 119

Query: 104 DGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           DG  S +++   L      N N YIP R  +GYG N   ++K    GA L+ITVDCG T+
Sbjct: 120 DGITSTSVLYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKESGADLVITVDCGITA 178

Query: 163 YDALQYATNQGIDVIVIDHHQ-VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           +  +++A +  + +I+ DHH     +   A  +VNP R ++      L   G +F+V++ 
Sbjct: 179 FPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENEFSFEFLAGVGTIFMVILC 238

Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281
           +Y  + +             LDLVA+ TV D+VPL+  NR     GL    R  N GL+ 
Sbjct: 239 LYERIGKK------AKAYKYLDLVAIGTVADIVPLVEENRILTKFGLEQLSRSKNKGLRF 292

Query: 282 L--------IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333
           L            N  +   + ++G++I P  NA GR+ ++ +  +LLISD+ +E+E++ 
Sbjct: 293 LLYKLFSTQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAKMVVKLLISDNDREIEIIV 352

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
            +L   N  R+ +++ ++E+ E  +  +  D+++  VIV     +H G++G+ A+++ +K
Sbjct: 353 KELINKNFERKELQNQIVEKVEKHI--EESDLKEDYVIVDYSPEYHHGVIGIAASKIVDK 410

Query: 394 FGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452
           + +P+  I  +ED G  +GS RSI  F+I  + +      + VK GGH+ AAG T+   N
Sbjct: 411 YYKPAIIIEVKEDEGIAVGSCRSIGNFNI--LEALQSMPELFVKFGGHSGAAGFTIGIKN 468

Query: 453 FGRLCD 458
                 
Sbjct: 469 LELFRK 474


>gi|196019095|ref|XP_002118923.1| hypothetical protein TRIADDRAFT_62906 [Trichoplax adhaerens]
 gi|190577694|gb|EDV18591.1| hypothetical protein TRIADDRAFT_62906 [Trichoplax adhaerens]
          Length = 260

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/255 (45%), Positives = 158/255 (61%), Gaps = 7/255 (2%)

Query: 7   LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSI 65
           L V+ S   F+W      E        TQK  I DI+A+VL+NR +   +  ++FL P I
Sbjct: 8   LNVKNSYKKFQWTLQEQNE--KDISFFTQKFNISDILAKVLINRGINDAESMQNFLYPKI 65

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
           + LMPDP +  D DKAA+RI ++I N EKI+I+ DYDVDGA S AL+ +FL    V A++
Sbjct: 66  KNLMPDPFLFKDMDKAAKRIAKSIINKEKIVIYADYDVDGATSSALLKKFLKDLGVEASV 125

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
           YIP R  +GYGPN S  +K I +G  LIIT DCG+ +++ ++YA + G+DVIVIDHH   
Sbjct: 126 YIPCRFNEGYGPNISAFQKLIEQGNDLIITTDCGTVAFEPIKYAQDMGVDVIVIDHHLAL 185

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSL 241
                 YA++NPNRLDD     ++ A GVVF V+  +  ILR+ N          +L+  
Sbjct: 186 ERLPECYAVINPNRLDDEFKFKNIAAVGVVFFVITAVRSILREQNFFNQLKNTEPNLIEY 245

Query: 242 LDLVALATVCDVVPL 256
           LDLVAL TVCDV+PL
Sbjct: 246 LDLVALGTVCDVMPL 260


>gi|312864661|ref|ZP_07724892.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Streptococcus downei F0415]
 gi|311099788|gb|EFQ58001.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Streptococcus downei F0415]
          Length = 325

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 165/330 (50%), Gaps = 16/330 (4%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S F W   + Q      L + +   + D+ A++L  R +      +DFL+  +  L  DP
Sbjct: 4   SKFDWKQ-VDQAPSEPFLELAKTEELDDLAAKILYQRGIDDQPKLEDFLSADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D DKA  RI QAI   EKI+I+GDYD DG  S ++M   L        +Y+P+R  
Sbjct: 62  YLLHDMDKAVERIRQAIEAGEKILIYGDYDADGMTSSSIMREALEMLGAENQVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LI+TVD G   ++A+ YA  QGIDV+V DHH +      A
Sbjct: 122 DGYGPNLSVYKYFIEQEGISLIVTVDNGVAGHEAIAYAQEQGIDVVVTDHHSLPDSLPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           YA+V+P   D      +L   GV F +   +   +              LLDLVA+ T+ 
Sbjct: 182 YAIVHPEHPDGDYPFKYLAGCGVAFKLASALLEGIPN-----------ELLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310
           D+V L G NR  V  GL +       GL+ L++   I  S +  E +G+ I P +NA GR
Sbjct: 231 DMVSLTGENRILVKYGLQMLAHTERIGLQELMQVAAIESSDLNEETVGFKIAPMLNALGR 290

Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLN 340
           + + N    LL   D QE   +A+ ++   
Sbjct: 291 LDDPNPAVELLTGFDDQEAHEIALMIEEKM 320


>gi|300813961|ref|ZP_07094259.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511924|gb|EFK39126.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 406

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 121/415 (29%), Positives = 206/415 (49%), Gaps = 22/415 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W     ++         +K+ +  I+ R+L+NR + S +  + FL P +  +   P+ L
Sbjct: 3   KWFIKNSKDYELSY----EKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIH-SPIFL 57

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  K+A   +  I     I I GDYDVDG  S  ++   L       +  IP+R++DGY
Sbjct: 58  KDMVKSANITISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIGAKVSYDIPNRVLDGY 117

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV---------KS 186
           G N  ++++   +   LIIT D G  +++ ++YA N GIDVIV DHH+          + 
Sbjct: 118 GINNKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQE 177

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A AL++P   D       +C A V F ++  +Y I  ++            L  VA
Sbjct: 178 KLPDANALIDPKVSDSKYPFKDICGACVAFKLISYLYLIKGKEE----QEVYDDFLAYVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSI 305
           LATVCDV+PL   NR  +  GL   +   + GL ALI   +I    I   ++G++IGP++
Sbjct: 234 LATVCDVMPLKDENRILIHYGLEALKNVQDVGLNALISACDIKKEDIDVYHIGFIIGPTL 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL+  D       A ++  +N  R+   +    +A   +  Q   +
Sbjct: 294 NACGRLKTAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQEL-L 352

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           ++  ++++     +  +VG++A R+KEKF RP+  ++ + +G   GSGRSI+ ++
Sbjct: 353 KKYPILLIYVPNINESVVGIIAGRIKEKFYRPTIVLT-DSNGIIKGSGRSIDEYN 406


>gi|294101597|ref|YP_003553455.1| phosphoesterase RecJ domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616577|gb|ADE56731.1| phosphoesterase RecJ domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 554

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 142/563 (25%), Positives = 241/563 (42%), Gaps = 40/563 (7%)

Query: 33  ITQKHAIPDIVARVLVNRNV----SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           I ++ + P  VA +L  +       ID A+ +L+PS+        +       A R  + 
Sbjct: 22  IARELSCPPFVAAILEMQGRVSLHDIDKARAWLSPSLDFFAASCFLGEGARAVAERWQR- 80

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           + +   ++++GDYDVDG +S  L M      +     YIP R ++GYG +  ++++ +  
Sbjct: 81  LSSLGNVVVYGDYDVDGVSSTTLAMELCKERAAGVRYYIPHRHMEGYGLHRQVVQQLLVA 140

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
           G   +I VDCG+   D L+ A   G++V V DHH  +  E+PA  +VNP    D      
Sbjct: 141 GCDTLIIVDCGTKDGDILKEAQQTGMNVFVFDHHLPEKGELPASFIVNPQIDGDK-EGKL 199

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           LCA  V++L             K+     L   LDLVALAT+ D + L  LNRA V +GL
Sbjct: 200 LCATAVLWLWAYQF--------KIMPMEWLAEHLDLVALATIADCMTLGSLNRALVKEGL 251

Query: 269 MVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
              R    PGL+ LI+R+      +  E L   + P +NA GR+  ++L  ++L  ++  
Sbjct: 252 ERIRYTARPGLELLIKRLGLFHRFVNEEQLAMKVIPCLNAAGRLAFADLAVKVLTGEEPV 311

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           E      +L  LN+ R+ + + + ++A   V       ++ S  V+  + W  G++  +A
Sbjct: 312 E--NHVEELISLNRKRQNLSTRITKEAVKVV-------EERSKHVLFEESWPVGVLSGVA 362

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447
           +RL  +   P   ++        G+ R  EG +   +         L   GGH  AAG +
Sbjct: 363 SRLCSEKNAPV-VLAAPVQDWIRGTLRMPEGGN--AVQVLDHLSDQLEAWGGHKQAAGFS 419

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           V + N+ +L    +    ++               L+ S + +         GP+G GNP
Sbjct: 420 VSKDNWEKLRGDLEHILASVEYEDPEISAL----ALHPSQITLQDWKSALDLGPFGMGNP 475

Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH- 566
            P+    ++  +    +    L +  +         +AF        E L       +  
Sbjct: 476 CPLLYCESYGNEQFLPLGKTGLHLKIQLGSEYL---VAFNSV-----EILKTLSSSHITG 527

Query: 567 VTGHLCVNYWRGSKRCQLRVLDA 589
              H  V++WRG  R Q  +   
Sbjct: 528 WVYHPRVDFWRGQPRLQFMLDYI 550


>gi|297538991|ref|YP_003674760.1| phosphoesterase DHHA1 [Methylotenera sp. 301]
 gi|297258338|gb|ADI30183.1| phosphoesterase DHHA1 [Methylotenera sp. 301]
          Length = 403

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 111/413 (26%), Positives = 192/413 (46%), Gaps = 20/413 (4%)

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240
                   A  ++NPN+        +L   GV+F  L+ +   +R+          +L  
Sbjct: 1   MPGQVTPKAACIINPNQHGCSFPSKNLAGVGVMFYCLLGLRAEMRERGLFAEKPEPNLTE 60

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLG 298
           LLDLVAL TV D+V L   NR  V +GL   R           L           A++LG
Sbjct: 61  LLDLVALGTVADLVKLDDNNRILVEQGLRRIRAGACSQGILALLRVAGRQPQSTNAQDLG 120

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + +GP +NA GR+ +  LG + L+++   E   +A +L  LN +RR +E+ M + A   +
Sbjct: 121 FYVGPRLNAAGRLDDMTLGIQCLLAESELEATTIAQRLQDLNVHRRSIEADMQDGAS--L 178

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
             +  +I     I +  + WH G++G+LA+R+KE++ RP  A +   DG   GSGRSI  
Sbjct: 179 SLEEINIDNQFAISIYQEDWHQGVIGILASRIKERYHRPVIAFANAGDGLLKGSGRSIAS 238

Query: 419 FDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476
             +   +      +  +++K GGHAMAAGLT+++ +F      F+    +++       V
Sbjct: 239 LHLRDALDLLSKHQPDLILKFGGHAMAAGLTIKQADFELFNQSFEAVVKSLITEADLESV 298

Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536
            ++DG L+ S +  A    LE+   +G G   P+F     ++ + R++   HL+++ + +
Sbjct: 299 LEVDGNLSKSEMTFATAQALEN-QVWGQGFAPPLFYDE-FEVLNQRLLGEKHLKLSLK-K 355

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           D+  + AI F                  +     L  N + G+++ QL +   
Sbjct: 356 DASVIDAIYFNHAEF---------LPDEIQAAYQLQTNSYNGTQKVQLNLRYV 399


>gi|332686623|ref|YP_004456397.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus
           plutonius ATCC 35311]
 gi|332370632|dbj|BAK21588.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus
           plutonius ATCC 35311]
          Length = 325

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/325 (33%), Positives = 174/325 (53%), Gaps = 14/325 (4%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74
           ++W     +      + +  +  I   + ++L  RN+  + A K FL+P++  +  DPL+
Sbjct: 6   YKWKLKEQEVLPQSFIQLLNQQKIDPFIGQLLWQRNLRNETALKKFLSPTLEDIY-DPLL 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D  KA +RI  A  N E+I+I+GDYD DG  S  LM   +     + + ++P+R + G
Sbjct: 65  MNDMKKAIQRIQTAAENGERILIYGDYDTDGITSTVLMKETIESIGGDVDFFLPNRFIHG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YGPN  + ++ I +G QLIIT+D G   ++A+Q A  +G+DVI+ DHH++      AYA+
Sbjct: 125 YGPNKEIFKEKIEQGIQLIITIDNGVAGHEAIQLAQEKGVDVIITDHHELPVSLPQAYAI 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P   D       L   GV F V   +                +  LDLVAL T+ D+V
Sbjct: 185 VHPRHPDGKYPFDDLAGVGVAFKVASALLEE-----------PPVEFLDLVALGTIADLV 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313
            L   NR  V  GL++ ++    GLK LIE+  +    I+ E++G+ + P +NA GR+GE
Sbjct: 234 SLTDENRVLVKIGLVILQKSERIGLKCLIEKSGLKQETISEEDIGFSLAPRLNAIGRLGE 293

Query: 314 SNLGSRLLISDDSQELEMLAMKLDV 338
           +  G +LL + D QE E LA  +D 
Sbjct: 294 AGPGVQLLATFDDQEAEQLATMIDE 318


>gi|226323923|ref|ZP_03799441.1| hypothetical protein COPCOM_01700 [Coprococcus comes ATCC 27758]
 gi|225207472|gb|EEG89826.1| hypothetical protein COPCOM_01700 [Coprococcus comes ATCC 27758]
          Length = 407

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 209/406 (51%), Gaps = 23/406 (5%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75
            WV L           I++K  I   VA ++ NR+ +  D  + +LN +I  L  D +++
Sbjct: 3   NWVLLRKGADFQ---HISEKFHISPRVASLIRNRDVIGDDAIEKYLNGTIADLY-DGMLM 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DKA   + + I  + KI I GDYD+DG  S  +++        + +  IPDR+ DGY
Sbjct: 59  KDMDKAVAVLGEKIKENAKIRIIGDYDIDGIQSTYILLEGFRMLGADVDSDIPDRMKDGY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188
           G N +L+++ +      I+T D G  + + + YA + G+ ++V DHH+V   E       
Sbjct: 119 GLNRNLIDRALEADVDTIVTCDNGIAAAEEIAYAKSMGMTIVVTDHHEVPYTEIGAGRRY 178

Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+V+P + D       LC A V + ++  +   + +D       D   L++ VA
Sbjct: 179 ILPEADAVVDPKQEDCTYPFKGLCGAAVAYKLVEALMEAMGKD-----AEDADYLMENVA 233

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305
           +AT+ DV+ L+  NR +V +GL + +R  N GLKAL+    ++   ++  ++G++IGP +
Sbjct: 234 IATIGDVMDLVDENRIFVKQGLDMLKRTENLGLKALMGCTGVNVDKLSPYHIGFVIGPCM 293

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           NA GR+  +     LL +    E ++LA  L  LN +R+ M +  +E+A  +V  +  ++
Sbjct: 294 NASGRLDTAKRALELLEAKKVAEADLLAGDLKALNDSRKDMTAQAVEEAFIQV--ENSEL 351

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411
           + A V+VV     H  + G++A R++EK   PS   + E  G+  G
Sbjct: 352 KDADVLVVYLPECHESLAGIVAGRIREK-ILPSGLCADEGRGRFKG 396


>gi|154499123|ref|ZP_02037501.1| hypothetical protein BACCAP_03117 [Bacteroides capillosus ATCC
           29799]
 gi|150271963|gb|EDM99189.1| hypothetical protein BACCAP_03117 [Bacteroides capillosus ATCC
           29799]
          Length = 537

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 141/562 (25%), Positives = 223/562 (39%), Gaps = 49/562 (8%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL---ILTDCDKAARRIVQAIYNSEKIM 96
             +   +L    +S +            L P P     L    +AA  I++A       +
Sbjct: 12  STVTEAILTASGLSEEEL----------LHPAPNSHVTLDGLQQAAEVILRARNEGRSAV 61

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I GDYDVDG  S A++    S   +     IP R  +GYG + + +E        LI+TV
Sbjct: 62  IIGDYDVDGITSTAILSMLFSFLRIRHTTIIPKRFTEGYGVSTAHIEDV---SDALIVTV 118

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G ++   L  A  +  + +V+  H +    +P    +      +  G  H C AG+ +
Sbjct: 119 DNGISAGSILTDARKERGNYVVVVDHHLPDASVPEVDAIIDPHYYNSGGFMHYCGAGLAY 178

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
            + + +         V        LL L A+ TV D +PLIG NR  V K L VA  +  
Sbjct: 179 QLAMYMISE-----DVAPETLCNDLLILAAVGTVADSMPLIGDNRLIVSKALAVANNRFA 233

Query: 277 PG---LKALIERVNISSPITAENLGYMIGPSINAGGRIGES--NLGSRLLISDDSQELEM 331
           P    L+ L++       + A  L Y + P +NA GR+ +S  +   + L+  D +    
Sbjct: 234 PMSAGLRCLLDACGDPGTLRANTLSYKLSPMLNAPGRLYDSGGSSVLKALLCKDQELGNS 293

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
              K+  +NQ+R+ M  A L  A      Q      +S IVV       G++G++A RL 
Sbjct: 294 YVTKMVAINQDRKRMVEAYLSLACDSAQGQ------SSPIVVYLPGLLEGLLGVVAGRLI 347

Query: 392 EKFGRPSFAISFEEDGK-GIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
             F      +S   DGK   GS R++ G +  +++       +L   GGH+ AAG+T+ER
Sbjct: 348 GTFNSTVVVLSDSRDGKAIKGSVRAVPGDNAKELLDSV--RNLLTVYGGHSGAAGMTLER 405

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            N     D        +  +         D  L+   V    +  L    P G G PNPV
Sbjct: 406 ANLDAFTD----ALKEMRSSHSVCSNLLYDVELSQETV-FRSMRALNRFEPLGHGVPNPV 460

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSR-GKRMHVTG 569
               N ++Q +  +      +              F + G    E   +    + + V G
Sbjct: 461 CVIRNVEVQDVAYMGQDKNTVKLVCDG--------FSILGFGKAELYRKHNEPRTLDVIG 512

Query: 570 HLCVNYWRGSKRCQLRVLDASP 591
            L  N++RG    Q+   D  P
Sbjct: 513 TLSENHFRGRTTIQVVAEDFHP 534


>gi|325273842|ref|ZP_08140025.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp.
           TJI-51]
 gi|324101027|gb|EGB98690.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp.
           TJI-51]
          Length = 352

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 172/332 (51%), Gaps = 9/332 (2%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V  +     L+ S+  L+P    L   +     +V AI   ++I+I
Sbjct: 17  NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVAAIDQRQRILI 72

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 73  VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S D +  A   G+ V+V DHH    +   A A++NPN+         L   GV+F
Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKALAGVGVIF 192

Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273
            VL+ +   LR   +       ++  LLDLVAL +V DVVPL   NR  V +GL   R  
Sbjct: 193 YVLMALRARLRSLGRYATQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252

Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
           +  PGLKA++E        IT+ +LG+++GP +NA GR+ + +LG   L+ +D    + +
Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDPALAQDM 312

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
           A +LD LNQ+R+ +E  M  +A A++     +
Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE 344


>gi|288574631|ref|ZP_06392988.1| phosphoesterase RecJ domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570372|gb|EFC91929.1| phosphoesterase RecJ domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 550

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 148/564 (26%), Positives = 248/564 (43%), Gaps = 38/564 (6%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
            +  L I +K    D+VA VL +R    +   ++F    I   +    +     +A    
Sbjct: 16  DDEILKIAEKMNCSDVVAAVLSSREKDGLINIENFRVGGIDESLSSLELGPGVSEAVDTW 75

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEK 144
            +++ +   ++++GDYDVDG AS AL +        +  + Y+P R  +GYG +  L+ +
Sbjct: 76  KRSV-SGSSVLVYGDYDVDGIASTALAVELAGVSGASSVHYYLPHRQKEGYGVHLPLIRR 134

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
            + +G Q +I  DCGS   + L+ A + G+ VIV DHH V  + I   ALVNP R     
Sbjct: 135 ALAQGVQTLIITDCGSKDVEPLREAVDGGMAVIVFDHHSVDGDTIDLPALVNPQRGGSQE 194

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
              +LCA  V++    +   + R+         L   LDLVALATV D VP+  LNR  V
Sbjct: 195 A-RNLCATSVLWCWAAVSSIVSRR--------WLEERLDLVALATVADCVPMGKLNRVLV 245

Query: 265 VKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            +GL + R     G+K L  R+ +S+  +  E L   + P +NA GR+  ++L   +++ 
Sbjct: 246 DRGLEMLRNTRRSGIKELYARLGVSTAVLDEETLAMKVIPCLNAAGRMDVADLALSIVLG 305

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
             +        +LD LN+ R+ + + +      K+       ++    V+  DRW  G++
Sbjct: 306 TGNV--AGDVDRLDALNRRRKDLSADISSAIAEKI-------KRDMEHVLYDDRWPVGVL 356

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
             +A+RL   + +  FA++        G+ R  EG +   ++S    + +L   GGH  A
Sbjct: 357 SAIASRLCHSYDK-GFALAAPSGSGIKGTLRVPEGANAVGILSEL--DDMLTAWGGHPYA 413

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
           AG +V+   +G+L     +   +IVP      V + D     S  ++AL   L + GP+G
Sbjct: 414 AGFSVDPSRWGKLSSRLSEKLRSIVPERTVETVIEYD----LSRFDMALWRDLRTIGPFG 469

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
             NP P F  P    + +  +    +    +         IAF           +     
Sbjct: 470 QLNPFPCFFIPRRGGERLLPLGKGEIHCKIDVGSGFL---IAFNGAEQHREMDNIAGW-- 524

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587
                    +N W+G    Q  V 
Sbjct: 525 ----LYRPRLNQWKGRINLQFLVE 544


>gi|291280765|ref|YP_003497599.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans
           SSM1]
 gi|290755467|dbj|BAI81843.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans
           SSM1]
          Length = 632

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 136/544 (25%), Positives = 258/544 (47%), Gaps = 35/544 (6%)

Query: 53  SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112
           ++D  ++  N +   ++ D   ++D   +A  I+QAI  ++ I+++GDYDVDG     ++
Sbjct: 49  TVDTIQNSFNDNFYKIIQDLNQISDIQDSANIIIQAIKQNKTILLWGDYDVDGTMGTTIL 108

Query: 113 MRFL---SHCSVN----ANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYD 164
            ++L      ++N       +IPDR  +GYG N ++++K  N     +++T+D G T+ +
Sbjct: 109 YKYLQAVKRLNLNSKFKVFYHIPDRFAEGYGLNQNMLDKLYNIYKYDVLVTIDSGITNLN 168

Query: 165 ALQYATNQ-GIDVIVIDHHQVKSEEIPAYA-LVNPNRLDDLSGQGH---LCAAGVVFLVL 219
            +++      +D IVIDHH +   EI  YA ++N  R DD+    +    C AG+ +L  
Sbjct: 169 EIKHIKQNYNVDTIVIDHHTISDSEIFKYAKVINHRREDDIFFNRYQTPFCGAGLAYLFS 228

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-----RQ 274
           + +   L+  +       +       A+AT+ DVVPL+  NR  V +G  +       ++
Sbjct: 229 LYLNEQLKLLSLNE----MDKYSVYAAIATIADVVPLVNYNRVLVRQGFKLLNDNTFLQK 284

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             P L  + + +NI   I ++ + + I P +NA GR+ ++N    L ++++ +++     
Sbjct: 285 EIPQLYYMKDILNIKQ-INSDEIAFKIAPVLNAVGRLSKANQIVDLFVTNNQRDINSKIN 343

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
               LN  R+  E  +LE     +  +    ++  + V  G+ WH G++G++A +L   F
Sbjct: 344 YFVTLNNERKSKEKEILELIYGVIDLEKIAKEKRIIAV--GNNWHKGVIGIVAGKLANNF 401

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
             P+  +S + DG    S RSIEGFD+ + +        L K GGH  AAGLT++  N  
Sbjct: 402 NVPTIILSKDNDGTCTASCRSIEGFDLYEAIKRCSFH--LEKFGGHEQAAGLTIKYENLK 459

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASA-VNIALIDMLESAGPYGAGNPNPVFAF 513
                F      I   + T   ++ D +L+    +++  I  L    P+G G   P F  
Sbjct: 460 EFVADFTNITSKIPVEISTKKTYETDVLLSPDYFLDVKNILSLHEIEPFGNGFTKPSFGA 519

Query: 514 PNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573
              K+  I+ +  ++   T   ++   ++A  F  Y       + +   K +  T +  +
Sbjct: 520 KG-KVVDIQSIGKSNNHYTVRFEN-FKIKANLFNYYDD-----INKILNKEIAFTYYPQL 572

Query: 574 NYWR 577
           + ++
Sbjct: 573 DTFK 576


>gi|258616311|ref|ZP_05714081.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           DO]
          Length = 600

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 192/418 (45%), Gaps = 28/418 (6%)

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236
           I+ DHH++      AYA+V+P           L   GV F V   +              
Sbjct: 1   IITDHHELPENLPDAYAIVHPRHPAGHYPFPDLAGVGVAFKVASALLEE----------- 49

Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN 296
             +  LDLVA+ T+ D+V L   NR  V  G+         GL+AL E   +      E 
Sbjct: 50  PPVEFLDLVAIGTIADLVSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADET 109

Query: 297 -LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355
            +G+ I P +NA GR+G+      LL + D +E  + A KL+ +N+ R+ +   + ++A 
Sbjct: 110 TIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEAL 169

Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
           A V  +        + ++    WH G++G++A ++  + G+P+  ++ +EDG   GSGRS
Sbjct: 170 AMVNKEN------HIHLLVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRS 223

Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           IE  ++           +    GGH  A GLT+   N   L +   ++  +    L+  P
Sbjct: 224 IEALNL--FEMLDQMRDLFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGP 281

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTF 533
             +ID VL  + V +  ID L+   P+G  NP P F F   + ++I+ +     HL+   
Sbjct: 282 ELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVL 341

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
               S+ L A+AF  +GT   E L      ++ V G L +N W G K+ QL V D S 
Sbjct: 342 SDASSQ-LDAVAFG-FGTQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 393


>gi|294671183|ref|ZP_06736037.1| hypothetical protein NEIELOOT_02891 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307121|gb|EFE48364.1| hypothetical protein NEIELOOT_02891 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 461

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 221/475 (46%), Gaps = 24/475 (5%)

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           +P+R  +GYG  P + E     GA L++TVD G  S   +  A   G+DVIV DHH + +
Sbjct: 2   VPNRFENGYGLTPEIAEAAAAAGAHLLLTVDNGIASMAGVARAAALGLDVIVTDHH-LPA 60

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLD 243
           EE P   +VNPN+        +L   GV+F VL  +   +R+  +        +L  LLD
Sbjct: 61  EETPDCIIVNPNQQGCGFPSKNLAGVGVIFYVLTALRAEMRRRGRFSDGLTEPNLADLLD 120

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG++AL +            ++G+ +
Sbjct: 121 LVALGTVADVVPLDHNNRILVSQGLKRMRAGKMRPGIRALFDAARRDWRKAQPFDMGFAL 180

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           GP INA GR+ + ++G   L++D+    + LA +L+ LN  RR +E +ML  A       
Sbjct: 181 GPRINAAGRLDDMSVGIACLLADNDAAAQTLAAQLNDLNIERREIEQSMLNDALTGFPET 240

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
               Q    + +  D +H G+VG++A RLK++F RP+   +  ++G+  GSGRSI    +
Sbjct: 241 LPFGQT--TLTIYRDDFHQGVVGIVAGRLKDRFHRPTIVFAPADNGEVRGSGRSIPKLHL 298

Query: 422 GKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
              +         +++K GGHAMAAGLT+   +  R    F++    ++     T  +  
Sbjct: 299 RDALDLVAKRHPDLILKFGGHAMAAGLTIHGNDVARFQTAFEETVRGLLDEDDLTQTYLT 358

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD 537
           DG L A  + +     L SA  +G G   P F      +   + +     H +   + +D
Sbjct: 359 DGSLPAGDITLERAQHL-SAHVWGQGFAPPSF-TDEFSVVRQQSMGAEGKHKKALLK-KD 415

Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
               +A+ +R            +  +R+        N WR +   QL +      
Sbjct: 416 GYEFEAMFWRCGE---------NIPERIRTVYRPVANEWRDNIELQLYIDYWEAA 461


>gi|218281323|ref|ZP_03487811.1| hypothetical protein EUBIFOR_00376 [Eubacterium biforme DSM 3989]
 gi|218217508|gb|EEC91046.1| hypothetical protein EUBIFOR_00376 [Eubacterium biforme DSM 3989]
          Length = 517

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 127/548 (23%), Positives = 221/548 (40%), Gaps = 53/548 (9%)

Query: 54  IDYAKDFLNPSI--------RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
                +FL P          + L+         +    RI++A+ N EK+++ GDYD DG
Sbjct: 8   TKKVLEFLEPDSSKWAYWTSKQLLNPVSESKCMESFKERILKAVSNREKVIVAGDYDCDG 67

Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
            ++  +M+  L    +    YIPDRI +GYG + + +     +G  LI+TVD G  S  A
Sbjct: 68  ISATTIMVSGLRKLGLECGFYIPDRIKEGYGLSEATVMLAHKKGYSLILTVDNGIKSKPA 127

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
           L  +   G+DVIV DHH +  E      +              LC AG+ +  +    R 
Sbjct: 128 LALSKELGMDVIVTDHHTMDEEVNCDIVVHPDLMEPC---FETLCGAGIAYECM----RK 180

Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285
           L  ++          LL L  LA++ D++ + G  RA +   L          + +L   
Sbjct: 181 LGVEDDY--------LLQLAGLASISDMMVVKGQTRALIQNALRSINETHEKHIFSLA-- 230

Query: 286 VNISSPITAENLGYMIGPSINAGGRIG---ESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
                 +   ++G+ + P +NA GR+      N   R  ++ D + +  L  ++  +N  
Sbjct: 231 --TDRDLNETSIGFQVVPKLNAIGRLSNLANVNNVVRYFLAHDDETIYTLGSQITQMNTI 288

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+ M   M + A  K  +         + ++E   +H GI+GL+A  L  +F +P   ++
Sbjct: 289 RKQMSDQMQKTALLKCKS------NEDIYIIEDTSFHEGIIGLVAGALCSRFNKPCIVLA 342

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             E G    S RS EGF+  + +         V  GGH  AAG ++    F    DF   
Sbjct: 343 KNEQG-YKASMRSPEGFNCMEFLG---PYKHFVVFGGHENAAGFSLNLNEFDLFEDFVHA 398

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
                  ++          ++    +++  I  L+   P+G G   P F   + +++S+ 
Sbjct: 399 RIKEYTYSVKKKETL----IITDDELSLETIQSLDVLRPFGPGFVFPSFEIIHPQIKSLY 454

Query: 523 VV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
              N  H + T ES     LQ + F        + +           G   +N ++G K+
Sbjct: 455 DFQNHKHRKYTLESG----LQCMRFNQSEVEYKKSVNAIH----SFIGTAQINQYQGRKQ 506

Query: 582 CQLRVLDA 589
               + + 
Sbjct: 507 VNFVIDEI 514


>gi|256752577|ref|ZP_05493431.1| phosphoesterase RecJ domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748515|gb|EEU61565.1| phosphoesterase RecJ domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 407

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 141/420 (33%), Positives = 228/420 (54%), Gaps = 16/420 (3%)

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183
           + YIP+R+V+GYG N   ++K    G +LII+VDCG TS   ++ A   GIDVI+ DHH 
Sbjct: 2   DYYIPERLVEGYGINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHS 61

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           +  E   A  ++NP+  D       L   GV F +   +              +   LLD
Sbjct: 62  IPKEIPQADVVINPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLD 110

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIG 302
           +V++ T+ D+VPL+G NR  V +GL       N GLKALI+     +S I   ++G+++ 
Sbjct: 111 IVSIGTIADIVPLLGENRIIVKEGLKRLNETQNIGLKALIKASGLQNSEIDEYHVGFILA 170

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +NA GR+  +    RLLIS D +E+E +A  L+  N NR+ +E+ +L++A  K+  + 
Sbjct: 171 PRLNAAGRLRSAEAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KET 229

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
            D+ +  VIV+    WHPG++G++A+R+ E+F RPS  IS   +G+G GSGRSIEGF++ 
Sbjct: 230 VDLNKEKVIVLWDKNWHPGVIGIVASRITERFHRPSILISL-GEGEGKGSGRSIEGFNLY 288

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
           K + +   +  L+K GGH MAAG+ +E+ N         ++A  ++  L   P  +ID  
Sbjct: 289 KALEYC--KDYLIKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAK 346

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           +    ++I +   ++   P+G+ NP P F F    +  +  +N    +     +D    +
Sbjct: 347 VKNEKIDIEIAKQVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYE 406


>gi|237750206|ref|ZP_04580686.1| single-stranded DNA-specific exonuclease [Helicobacter bilis ATCC
           43879]
 gi|229374100|gb|EEO24491.1| single-stranded DNA-specific exonuclease [Helicobacter bilis ATCC
           43879]
          Length = 583

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 135/554 (24%), Positives = 239/554 (43%), Gaps = 51/554 (9%)

Query: 22  LGQEGINRALAITQKH-AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80
             Q   N      Q    I +I + +L  R       KDF   +++  +P P  L +  +
Sbjct: 8   NTQHDFNAIKKGLQTFSHINEIES-ILKQR------FKDFCFHTLKD-IPHPKELHNNME 59

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNP 139
           A+  + Q+I  +EKI+I GDYD DG  + ++M+ F       N    +P+R + GYG + 
Sbjct: 60  ASLFVCQSILRNEKIVIVGDYDTDGICATSIMLDFFDQLSYNNVAFAMPNRFIHGYGFSV 119

Query: 140 SLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK------SEEIPA 191
            L  + + E +   +IITVD G +S+ A +      I +I+ DHH ++       +    
Sbjct: 120 KLFHEILKEHSDVKVIITVDNGVSSFQAAELCREHNIGLIITDHHTLEVDSNRDQKIPCC 179

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLI------------------YRILRQDNKVP 233
             ++NP +         +C + V +     I                   ++L    K  
Sbjct: 180 NFMINPQQAICNFPYSEICGSLVAWYFCCAIKISMLNLCSDSNTKNNQTKKLLNCYEKNL 239

Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293
               + S L LV +AT+ DV+PL  +N       L           +AL+E  N+ S I 
Sbjct: 240 KIIRMESFLLLVGIATIADVMPLNAINHTICKYALKHIPNSKRYAFQALME--NLKSSID 297

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
           ++ LG+ I P +NA GRI +  +    L S           +L  LN  R+L++  +  +
Sbjct: 298 SQVLGFRIIPLLNAAGRISDGKIALSFLRSTSLSNARFYLKQLKDLNTQRKLLQDEVTNK 357

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
           A   +       Q  +++   G+ WH G++G++A ++ ++F +P F ++    G   GSG
Sbjct: 358 AFQSISQIP---QNENMLCAVGEDWHEGVLGIVAGKMADEFQKPCFVLTNTN-GVCKGSG 413

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           RS    D+  + S      ++ + GGH  A GL ++  N       F+  +HNI      
Sbjct: 414 RSAGDVDL--ISSMQKIGHLMQRYGGHVGAVGLELKDYNLESFIKSFKPISHNIEKKE-- 469

Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533
                + G+LN+  +N  L   + S  P+G GNP P F     ++   +       +  F
Sbjct: 470 ----NVLGILNSHLINYELFSCITSFEPFGNGNPLPKFLCE-MEILECKKTGQGFREFHF 524

Query: 534 ESQDSETLQAIAFR 547
           +  ++ +++ + F 
Sbjct: 525 KRTENSSIKGMFFN 538


>gi|329733187|gb|EGG69524.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 346

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 108/351 (30%), Positives = 180/351 (51%), Gaps = 14/351 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           ++W      E I+    +T K  +  IV ++L ++++  + A + +      +  D L L
Sbjct: 6   YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           +D  KA  RI +AI N EKI+++GDYD DG  S  +++  L         +IP+R  +GY
Sbjct: 63  SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           GPN        +EG  LIITVD G   ++ ++   + G+DVIV DHH++ S    AYA+V
Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P           LC AGV + +  ++   +                 LVA+ T+ D+V 
Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQVLIENVPD-----------YFKALVAIGTIADLVS 231

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           L   NR+ V +GL V   Q    +KAL++    +  I  E +G++IGP +NA GR+ +++
Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
           L   LL++DD +E   LA +++  N+ R+ + + + E+A A   T+     
Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGD 342


>gi|94988415|ref|YP_596516.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           MGAS9429]
 gi|94541923|gb|ABF31972.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes
           MGAS9429]
          Length = 309

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 151/315 (47%), Gaps = 21/315 (6%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72
           S + W     +        + +   +    A+++ +R +  + A  +FL   +  L  DP
Sbjct: 4   SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D  KA  RI QAI   E+I+I+GDYD DG  S +++   L        +Y+P+R  
Sbjct: 62  YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121

Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           DGYGPN S+ + FI +    LIITVD G   ++A++YA  Q +DVIV DHH +  E   A
Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
           +A+++P   D      HL   GV F +   +   L               LDLVA+ T+ 
Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS------SPITAENLGYMIGPSI 305
           D+V L G NR  V  GL + +     GL+ L+    +S           + +G+ I P +
Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLELMSLSPIDLEHFNEDAIGFQIAPQL 290

Query: 306 NAGGRIGESNLGSRL 320
           NA GR+ + N    L
Sbjct: 291 NALGRLDDPNPAIEL 305


>gi|320527505|ref|ZP_08028685.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Solobacterium moorei F0204]
 gi|320132062|gb|EFW24612.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Solobacterium moorei F0204]
          Length = 530

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 132/577 (22%), Positives = 238/577 (41%), Gaps = 58/577 (10%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81
                   A A+ +K+ I  + A++L   ++  +   +       L            + 
Sbjct: 2   KYNVIDVDASALQEKYKIGLLSAKLLKASHLDDEEIHELFETDTALTTSKAAC---IQRC 58

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
            +R++QA  N+EK+MI GDYD DG  S  +M   L    +    YIPDR+ +GYG +   
Sbjct: 59  CKRLLQARDNNEKVMIAGDYDADGICSTTIMKMTLMKLKIEHGYYIPDRMKEGYGLSAHT 118

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           +E    +G  LIITVD G  ++ A+Q A   G+D+I+ DHHQ+  E    Y  V+PN ++
Sbjct: 119 VELAHQKGYSLIITVDNGVKAHAAIQKANELGVDIIITDHHQIDEEIETPYV-VHPNYME 177

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                       +       I R L  +N +              +A + DV+PL    R
Sbjct: 178 SEFCYLSGAGVAL------QIARNLIGENDIQTA--------FACVAAIADVMPLWKETR 223

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGS 318
             V +GL V ++      ++LI  +N  S I   ++ + I P +N+ GR+ +    N   
Sbjct: 224 RIVKRGLAVLKQGR---PRSLISLLNPGSGIDMTSISFSIVPKLNSLGRMSDLANVNTMI 280

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
             L+S++ +++   A +++ +N+ R+ + S++ E A   +  +          ++  + +
Sbjct: 281 PFLLSNNEEQIAHYATQVNQINEKRKEISSSISETAINMIADE-------KFPILYQEDF 333

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438
           H G+ GL+A R+  +  RP   ++ +      GSGRS+ GF++        +   L   G
Sbjct: 334 HEGVCGLVAGRIVSQLHRPVLVMA-KSHNTIKGSGRSVSGFNLFDFFK---DFENLTAFG 389

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA--LITTPVFKIDGVLNASAVNIALIDML 496
           GH  A G++V    F       Q+   N             +ID       ++   I  +
Sbjct: 390 GHEQAVGISVPIEKFEEFYQQAQEKMANAGYEYIEPVQDAIRIDAE----DIHFNNIIDI 445

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQS----IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
           +   PY      P FA  +  +       ++V          +  S   +A+ ++     
Sbjct: 446 DCFTPYPKEMIEPNFALEDMNVVERKETAKMVK------YLIANSSGGFEAVLYKSRNIA 499

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
                         + G L ++ WR    CQ+ + D 
Sbjct: 500 APILPK-------RLIGKLSIHRWRNRTTCQMILEDI 529


>gi|46199109|ref|YP_004776.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus
           HB27]
 gi|46196733|gb|AAS81149.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus
           HB27]
          Length = 666

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 143/579 (24%), Positives = 235/579 (40%), Gaps = 53/579 (9%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           RW  L           +     +    A    +R        D     + L         
Sbjct: 6   RWRVLPLPPLAQWREVMA-ALEVGPEAALAYWHRGFRRKEDLDPPLALLPL--------K 56

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
              +AA  + +A+   ++I + GDYD DG    A+++R L+    + + +IP R+ +GYG
Sbjct: 57  GLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLTALGADVHPFIPHRLEEGYG 116

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                + + +   + L +TVDCG T++  L+     G++VIV DHH       P   +  
Sbjct: 117 VLMERVPEHLE-ASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHP 175

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
               D    +     AGV FL+L  ++  L            L   DL A+ T+ DV PL
Sbjct: 176 ALTPD---LKEKPTGAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPL 225

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
            G NRA V +GL         GL+ L E V  +    A  + + I P INA  R+GE+  
Sbjct: 226 WGWNRALVKEGLARIPASSWVGLRLLAEAVGYTG--KAAEVAFRIAPRINAASRLGEAEK 283

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
             RLL+++D+ E + L  +L  LN  R+ +E AML +   +         +A  IV+   
Sbjct: 284 ALRLLLTEDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDP 337

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
             HPG++G++A+R+ E   RP F ++        G G       I  + +    E +L++
Sbjct: 338 EGHPGVMGIVASRILEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLR 390

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
            GGH  AAG  ++   F       + +A      +    +  +   L    +   +   L
Sbjct: 391 YGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFREL 447

Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555
               PYG GNP P+F       +  R +    HL    +      ++ +A++     L  
Sbjct: 448 ALLEPYGEGNPEPLFLLFGAP-EEARRLGEGRHLAFRLKG-----VRVLAWKQGDLALPP 501

Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                    + V G L  N W G    +++ +D    E 
Sbjct: 502 --------EVEVAGLLSENAWNGHLAYEVQAVDLRKPEA 532


>gi|255600394|ref|XP_002537447.1| Single-stranded-DNA-specific exonuclease recJ, putative [Ricinus
           communis]
 gi|223516309|gb|EEF24936.1| Single-stranded-DNA-specific exonuclease recJ, putative [Ricinus
           communis]
          Length = 369

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 19/380 (5%)

Query: 215 VFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273
           +F VL+ +   L+Q  +V      L SLLDLVAL TV D+V L   NR  V +GL   R+
Sbjct: 1   MFYVLIALRAELKQRGQVSDEGVHLGSLLDLVALGTVADLVKLDANNRILVRQGLKRIRQ 60

Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            Q +PG+ A+++        + A++LG+ +GP +NA GR+ +  +G R L+++  QE   
Sbjct: 61  GQASPGILAILKLAGRDFLQVNAQDLGFYVGPRLNAAGRLDDMTIGIRCLLAETPQEAMQ 120

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
            A KL VLN  R+ +E+ M   A A +     D Q    I V    WH G++G+LA+R+K
Sbjct: 121 YAQKLHVLNAERKQIEAEMQWDAMADLTQDFRDDQ--YTISVFQPDWHQGVIGILASRIK 178

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449
           E+F RP  A +   DG   GSGRSI G  +   +      +  +++K GGHAMAAGL++ 
Sbjct: 179 ERFHRPVIAFADAGDGLIKGSGRSIAGLHLRDALDLVTKQQPDLIIKFGGHAMAAGLSIR 238

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
             +F R    F++    ++ A     V + DG L A  + +   + +     +G G P P
Sbjct: 239 ADDFARFQQTFEQVVQRLIDAETLQEVLETDGALAAQEMTLQTAEAIAH-QVWGQGFPQP 297

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           VF     ++   +V+   HL++  +  + +   AI F+               +++ +  
Sbjct: 298 VFYDT-FQVLQQKVLGEKHLKLRLQKHN-QQFDAIYFQHAEF---------LPEQVEIAY 346

Query: 570 HLCVNYWRGSKRCQLRVLDA 589
            L VN + G++  QL+V+ A
Sbjct: 347 ALQVNEFNGARNLQLQVVHA 366


>gi|55981136|ref|YP_144433.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus
           HB8]
 gi|283135302|pdb|2ZXO|A Chain A, Crystal Structure Of Recj From Thermus Thermophilus Hb8
 gi|283135303|pdb|2ZXP|A Chain A, Crystal Structure Of Recj In Complex With Mn2+ From
           Thermus Thermophilus Hb8
 gi|283135304|pdb|2ZXR|A Chain A, Crystal Structure Of Recj In Complex With Mg2+ From
           Thermus Thermophilus Hb8
 gi|55772549|dbj|BAD70990.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus
           HB8]
          Length = 666

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 133/505 (26%), Positives = 216/505 (42%), Gaps = 44/505 (8%)

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
             ++I + GDYD DG    A+++R L+    + + +IP R+ +GYG     + + +   +
Sbjct: 71  QGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-AS 129

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            L +TVDCG T++  L+     G++VIV DHH       P   +      D    +    
Sbjct: 130 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPD---LKEKPT 186

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            AGV FL+L  ++  L            L   DL A+ T+ DV PL G NRA V +GL  
Sbjct: 187 GAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPLWGWNRALVKEGLAR 239

Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                  GL+ L E V  +       + + I P INA  R+GE+    RLL++DD+ E +
Sbjct: 240 IPASSWVGLRLLAEAVGYTGKAVE--VAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQ 297

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            L  +L  LN  R+ +E AML +   +         +A  IV+     HPG++G++A+R+
Sbjct: 298 ALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRI 351

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
            E   RP F ++        G G       I  + +    E +L++ GGH  AAG  ++ 
Sbjct: 352 LEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDE 404

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
             F       + +A      +    +  +   L    +   +   L    PYG GNP P+
Sbjct: 405 ALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFRELALLEPYGEGNPEPL 461

Query: 511 FAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F       +  R +    HL    +      ++ +A++     L           + V G
Sbjct: 462 FLLFGAP-EEARRLGEGRHLAFRLKG-----VRVLAWKQGDLALPP--------EVEVAG 507

Query: 570 HLCVNYWRGSKRCQLRVLDASPVEG 594
            L  N W G    +++ +D    E 
Sbjct: 508 LLSENAWNGHLAYEVQAVDLRKPEA 532


>gi|260655713|ref|ZP_05861186.1| putative single-stranded DNA-specific exonuclease [Jonquetella
           anthropi E3_33 E1]
 gi|260629630|gb|EEX47824.1| putative single-stranded DNA-specific exonuclease [Jonquetella
           anthropi E3_33 E1]
          Length = 553

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 144/558 (25%), Positives = 226/558 (40%), Gaps = 39/558 (6%)

Query: 34  TQKHAIPDIVARVLVNRNVSIDYAKDFLNPS-IRLLMPDPLILTDCDKAARRIVQAIYNS 92
            +      +   VL +R V+ D    FL    +   +    + +   +AA +   A+   
Sbjct: 23  ARGLGCSPLCVAVLESRGVAADQIPQFLRQQPLVDQLGSLNLGSGAARAASKWSDAL-RG 81

Query: 93  EKIMIFGDYDVDGAASVALMMRFLSHCS--VNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
           + ++++GDYDVDG +S  L M  L+  S       YIP R  +GYG +   +      G 
Sbjct: 82  KSVLVYGDYDVDGVSSTVLAM-ALAQMSGAARTYYYIPRRSTEGYGLHCEGIRMAAQSGI 140

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
           Q +I  DCGS     +  A   G+DV++ DHH V  E   A ALVNP    D      LC
Sbjct: 141 QTVIVTDCGSRDRSEVALAKESGMDVLIFDHHLVDGELAEADALVNPQIDGDGEA-RTLC 199

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
           A GV++           Q    P    LL L+ L  LAT+ D +PL  LNR  + +GL  
Sbjct: 200 ATGVLWCWAA-------QSGLFPK-ESLLELVQLAGLATIADCMPLEFLNRELIRQGLDS 251

Query: 271 ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
            RR+   GL  LI  + +  + +   +L   + PS+NA GR+G ++L   ++      + 
Sbjct: 252 MRRRPFGGLGRLISALRLEGASLDERDLAMRLIPSLNAAGRLGAADLAVNVVA--QLGDA 309

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389
           E     L  +NQ RR + S + +    ++ T        S  V     W  GI+  +A+R
Sbjct: 310 EQNVDSLMKVNQRRRDLSSQIADSLSKQLDT------DCSTQVFFNPSWPVGILSGIASR 363

Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449
           L  +  R  FA++        G+ R  EG +  +++        L   GGH  AAG +V 
Sbjct: 364 LCHE-RRQGFALAASTQRGVRGTLRVPEGANAVELLKQL--SDKLDDWGGHQYAAGFSVS 420

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
              + ++     K    + P          D       + +  +  L   GP+G GNP P
Sbjct: 421 AAQWPKVALGLNKLLSQVQPVAERHEAILYD----PLRIEMDDLGDLAKLGPFGNGNPAP 476

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            F  P+   +    +      +T   + +  L   AF       G   +           
Sbjct: 477 SFFVPSCADEVYEPLGKDGRHLTVNCRGARLL---AFG------GARQIDDAPGIAGWIY 527

Query: 570 HLCVNYWRGSKRCQLRVL 587
              +N WRG +  Q  V 
Sbjct: 528 QPRINVWRGRRNVQFVVD 545


>gi|14595119|dbj|BAB61865.1| single-stranded DNA specific exonuclease RecJ [Thermus
           thermophilus]
          Length = 666

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 134/505 (26%), Positives = 217/505 (42%), Gaps = 44/505 (8%)

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
             ++I + GDYD DG    A+++R L+    + + +IP R+ +GYG     + + +   +
Sbjct: 71  QGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-AS 129

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            L +TVDCG T++  L+     G++VIV DHH       P   +      D    +    
Sbjct: 130 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPSPGLVVHPALTPD---LKEKPT 186

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            AGVVFL+L  ++  L            L   DL A+ T+ DV PL G NRA V +GL  
Sbjct: 187 GAGVVFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPLWGWNRALVKEGLAR 239

Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                  GL+ L E V  +       + + I P INA  R+GE+    RLL++DD+ E +
Sbjct: 240 IPASSWVGLRLLAEAVGYTGKAVE--VAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQ 297

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            L  +L  LN  R+ +E AML +   +         +A  IV+     HPG++G++A+R+
Sbjct: 298 ALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRI 351

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
            E   RP F ++        G G       I  + +    E +L++ GGH  AAG  ++ 
Sbjct: 352 LEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDE 404

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
             F       + +A      +    +  +   L    +   +   L    PYG GNP P+
Sbjct: 405 ALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFRELALLEPYGEGNPEPL 461

Query: 511 FAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           F       +  R +    HL    +      ++ +A++     L           + V G
Sbjct: 462 FLLFGAP-EEARRLGEGRHLAFRLKG-----VRVLAWKQGDLALPP--------EVEVAG 507

Query: 570 HLCVNYWRGSKRCQLRVLDASPVEG 594
            L  N W G    +++ +D    E 
Sbjct: 508 LLSENAWNGHLAYEVQAVDLRKPEA 532


>gi|282857440|ref|ZP_06266673.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Pyramidobacter piscolens W5455]
 gi|282584725|gb|EFB90060.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Pyramidobacter piscolens W5455]
          Length = 555

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/572 (24%), Positives = 234/572 (40%), Gaps = 46/572 (8%)

Query: 28  NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN-PSIRLLMPDPLILTDCDKAARRIV 86
            +   + ++    ++ A VL +R    +  +  LN P +R  + +  +      A    +
Sbjct: 17  EKTRDLARRLECSELAAAVLDSRAADEEQFRQLLNVPDLRRQLDELFLGRAASAARELWL 76

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145
           +A+   +++ ++GDYDVDG +S  + +          A  YIPDR  +GYG +P+ M + 
Sbjct: 77  KAVP-GKRVFVYGDYDVDGVSSTVIALELAQQSGAAEAVYYIPDRRSEGYGLHPANMRRI 135

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
           I +G   +I  DCGS   +A+  A   G++V++ DHH  + + +   +LVNP    D   
Sbjct: 136 IADGFDTLIVTDCGSKDVEAVDLARAAGMNVLIFDHHAAEGDIVRLESLVNPQMDGDAEA 195

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
              LCA  V++             + +     L  +L L ALATV D +PL  LNR+   
Sbjct: 196 -KRLCATAVLWCWAW--------QSHILPENRLAGMLQLAALATVSDCMPLGPLNRSLTR 246

Query: 266 KGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322
           +G+ + RR    GL+ L+  +      S I    L   + P +NA GR+  +++   +L 
Sbjct: 247 EGIKMMRRAPRRGLRELLRSLCPNEPDSMIDENRLSMRVIPCLNAAGRVQVADVAVNVLS 306

Query: 323 S-DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
                 EL+    +L  LN+ RR +       A           Q     V+    W  G
Sbjct: 307 GLGSPLELQRSVDQLLDLNRRRRDIS------ASICASINAGLEQGDRSQVLFNGSWPVG 360

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           I+  +A+RL  +  + +FA++    G   G+ R   G +   +      + +L   GGH 
Sbjct: 361 ILSAIASRLCNEHNK-AFALAAPSGGGIRGTLRVPGGAN--AVELLKSLDDLLDAWGGHK 417

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
            AAG +V+++ + RL         NI        V + +       +  A  D +   GP
Sbjct: 418 SAAGFSVDQLKWPRLERELNSLLQNIKVEKTPEEVIEFE----PDRITGAAWDEVLRIGP 473

Query: 502 YGAGNPNPVFAFPNHKLQSIRV----VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
           +G GNP P F          R     +    L        +     IAF        E +
Sbjct: 474 FGNGNPLPAF----FVPLDSRTTYAPLGKRGLHTRVLFGGNAL---IAFNGA-----EQI 521

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            ++ G R  +      N W+G    Q  V   
Sbjct: 522 GRTEGIRGWI-YRPRPNLWQGRVSLQYIVEGI 552


>gi|124514660|gb|EAY56172.1| putative RecJ exonuclease [Leptospirillum rubarum]
          Length = 549

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 230/561 (40%), Gaps = 50/561 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP---LI 74
           W+        +    + ++  +  I AR L+ R    D   +F         P P     
Sbjct: 14  WLLPS--VMDSDVSDLAKEIGLDPIWARFLLGRGFHWDSLDEFF------FHPQPPGEES 65

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + D   A   +  A+     I I+ D DVDG  S  +  RFLS       + +  R  +G
Sbjct: 66  VGDIRLAQNILGDALDERAPIAIYADLDVDGITSAVMCSRFLSRRQHPHRVLL-VRREEG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +G NP  +     EG +++I  D G ++   LQ A  +G+  IV+DHH ++       A+
Sbjct: 125 HGVNPDRILSLPQEGFRVLIVADLGVSNLPLLQEAGRRGLASIVVDHHLLQEPWPNDMAI 184

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           V+P       G+ HL A G ++++L  + +   +            +  L  LA + D  
Sbjct: 185 VHPQ------GRSHLTAVGCLYVLLRSLVKHPEER----------EMAFLAGLAVLSDRA 228

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           P++  NR +V   L     +  PG++AL+ +  +   I   +  + + PS+NA GR+ + 
Sbjct: 229 PILHENRYFVQALLDREILEAFPGVRALLRK-RVHRKIMINDYSFWVIPSLNAPGRMSDP 287

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                LL++  S E E  ++++  +N+ RR  E ++ E+A  +              V+ 
Sbjct: 288 LPAFHLLMARTSSEAERYSIQVMEMNRRRREAEWSIYEEARRQW---------DGTPVLF 338

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
              W PG++G +A RL E+F +  F  +   +G   GS R   G  +  ++     EG+ 
Sbjct: 339 APDWAPGVMGRIAHRLSEEFDQSVFVATLSPNGGVRGSLRLRGGITLSDILKEL--EGLP 396

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNASAVNIAL 492
           + GGGH  A GL         +              P +  +   +ID  L AS  + + 
Sbjct: 397 ISGGGHPKAGGLGFPVELLETVRKVLGNILKEPSPCPEVQDSSSLEIDAFLPASYRSPSF 456

Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552
            + L    P+G G P P+F   N +++ +   N   +   F        +A AFR     
Sbjct: 457 WEGLGKLVPFGEGFPEPLFGIRNVQIERMESTNSRLVLCHFRWSHGTE-KA-AFRQTSN- 513

Query: 553 LGEFLMQSRGKRMHVTGHLCV 573
                +   G R+ +     +
Sbjct: 514 -----LPKPGDRVDLVMTPEL 529


>gi|205374211|ref|ZP_03227010.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus
           coahuilensis m4-4]
          Length = 269

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72
           S  RW+     E I     + Q+ ++  I+A++L NR +   D A+ FL  S +    DP
Sbjct: 4   SKSRWLVKEAPEQI--VQTLQQELSVSSIIAKLLYNRGIKDSDTARSFLW-SEKQEFHDP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L   D A  RI ++I   E I++FGDYD DG  S ++++  L      A+ YIP+R  
Sbjct: 61  FLLKGMDIATDRIKRSIELGEAILVFGDYDADGVTSTSVLLSTLRDLGAEADFYIPNRFN 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +        G  LIITVD G  +      A   G+D+I+ DHH+   E   A 
Sbjct: 121 EGYGPNENAFRWAYEMGYSLIITVDTGIAAIHEAAVAKELGLDLIITDHHEPGPELPDAL 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+++P   +       L   GV F V   +Y  + +            LLDLV + T+ D
Sbjct: 181 AIIHPKLPNSNYPFHELAGVGVAFKVAHALYGHVPE-----------HLLDLVTIGTIAD 229

Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS 290
           +VPL G NR+ V +GL       +   +   +      
Sbjct: 230 LVPLFGENRSLVKRGLKSCNPPTDQAYRHFAKWQGRRW 267


>gi|116327798|ref|YP_797518.1| single-stranded DNA-specific exonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331543|ref|YP_801261.1| single-stranded DNA-specific exonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120542|gb|ABJ78585.1| Single-stranded DNA-specific exonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125232|gb|ABJ76503.1| Single-stranded DNA-specific exonuclease [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 645

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 120/609 (19%), Positives = 235/609 (38%), Gaps = 83/609 (13%)

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
           +  L   +R L P P +L D + A   + + +   +KI++FGD D DG +S +L+  FL 
Sbjct: 45  EHLLYHGLREL-PSPFLLPDLEPALELLKEFVRTEKKILLFGDRDCDGVSSTSLLGGFLK 103

Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI--- 174
                  + +     + YG  P+ +E        L+IT+D G+T++  +    + GI   
Sbjct: 104 KIH-RGELILKTSNEEDYGLCPAALEFVKKNKPDLLITLDFGTTNHVQINELASLGIKVI 162

Query: 175 ------------DVIVIDHHQVKSEEIPAYALV--------------------NPNRLDD 202
                       D  ++   +  S+                            +   + D
Sbjct: 163 VLDHHEIPEQIPDCYLVSPKRQDSQYPSEKICTSVLALKFIQAYLYSSLEEYKHATWIGD 222

Query: 203 LSGQGHLCAAGVVFLVLVLIYRI-------------------LRQDNKVPLNF-----DL 238
            +            L+     +                      +       F      L
Sbjct: 223 GNSLFSGYLIYRGKLIFQGDRQEAESKFSIPIQDKSYTFESPYPEREWFYQEFLKYPAIL 282

Query: 239 LSLL---DLVALATVCDVVPLIGLNRAYVVKGLMVARR------QGNPGLKALIERVN-I 288
              L   DL ++ TV D++PL G NR  V +G  +  +      +   GL  L++ +   
Sbjct: 283 EQYLQNFDLASIGTVSDMMPLHGENRIIVKEGCKILFKLHRRETRHREGLFQLLQLMELA 342

Query: 289 SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES 348
              +T+++LG+++GP IN+ GR+  + +   LL+ +D Q  +  A +L  LN+ R+    
Sbjct: 343 DKHVTSKDLGWVLGPMINSAGRMNRTEVALNLLLEEDPQRAQTGAKELQKLNEERKERTK 402

Query: 349 AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK 408
             L + +  +  +  +  + SV+      + PG+ G++A RL E++ +P   I+  + G 
Sbjct: 403 RNLFKVDGFLKRK-KERTEKSVLFCYEPDFEPGVSGIVATRLVEEYKKPVLFITP-DHGH 460

Query: 409 GIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468
             GS R+    ++  ++  A  E I ++ GGH  A G +++      L     + A N +
Sbjct: 461 AKGSIRAYGKENVLNLLKKA--ESIFLQFGGHKEAGGFSLDLEKIPELAKTIFEHADNWL 518

Query: 469 PALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV- 524
                    +       L    +N  +   L    P+G  NP P+++  N K+   + + 
Sbjct: 519 EEEQKQTTLEQTPSLISLRPEELNPKIFQELSIFEPFGHENPVPLYSIKNAKVYHTKPMT 578

Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584
           +  H++        E++Q + +      L    + S+ + + + G L  + +R     Q 
Sbjct: 579 DGKHVRFRILGAP-ESIQCLIWNRGKDFLE---LLSKNESLDLWGSLEESTFRSKTSLQF 634

Query: 585 RVLDASPVE 593
            V      E
Sbjct: 635 VVNYFQKSE 643


>gi|206602536|gb|EDZ39017.1| Putative RecJ exonuclease [Leptospirillum sp. Group II '5-way CG']
          Length = 549

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 131/559 (23%), Positives = 229/559 (40%), Gaps = 46/559 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILT 76
           W+        +    + ++  +  I AR L+ R    D   + F +P      P    + 
Sbjct: 14  WLLPS--VMDSDVSNLAREIGLDPIWARFLLGRGFHWDSLDESFFHPQ----PPGEESVG 67

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D   A   +  A+     I I+ D DVDG  S  +  RFLS       + +  R  +G+G
Sbjct: 68  DIRLAQNILWDALDEQAPIAIYADLDVDGITSAVMCSRFLSRRQHPHRVLL-VRREEGHG 126

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            NP  +     EG +++I  D G ++   LQ A  +G+  IV+DHH ++       A+V+
Sbjct: 127 VNPDRILSLPQEGFRVLIVADLGVSNLPLLQEAGRRGLSSIVVDHHLLQEPWPNDMAIVH 186

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
           P       G+ HL A G ++++L  +            + +   +  L  LA + D  P+
Sbjct: 187 PQ------GRSHLTAVGCLYVLLRSLV----------DHPEEREMAFLAGLAVLSDRAPI 230

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
           +  NR +V   L        PG++AL+ +  +   I   +  + + PS+NA GR+ +   
Sbjct: 231 LHENRYFVQALLDREILDAFPGVRALLRK-RVHRKIMINDYSFWVIPSLNAPGRMSDPLP 289

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
              LL++  S E E  +M++  +N+ RR  E ++ E+A  +              V+   
Sbjct: 290 AFHLLMARTSSEAERYSMQVMEMNRRRREAEWSIYEEARRQW---------DGTPVLFAP 340

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
            W PG++G +A RL E+F +  F  +   +G   GS R   G  +  ++     EG+ + 
Sbjct: 341 DWAPGVMGRIAHRLSEEFDQSVFVATLSPNGGVRGSLRLRGGITLSDILKEL--EGLPIS 398

Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNASAVNIALID 494
           GGGH  A GL         +              P +  +   +ID  L AS  + +  +
Sbjct: 399 GGGHPKAGGLGFPVELLETVRKVLGNILKEPSPCPEVQDSSSLEIDAFLPASYRSPSFWE 458

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554
                 P+G G P P+F   N +++ +   N   +   F        +A AFR       
Sbjct: 459 GFGKLVPFGEGFPEPLFGIRNVQIERMESTNSRLVLCHFRWSHGTE-KA-AFRQTSN--- 513

Query: 555 EFLMQSRGKRMHVTGHLCV 573
              +   G R+ +     +
Sbjct: 514 ---LPKPGDRVDLVMTPEL 529


>gi|76799589|ref|ZP_00781713.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus
           agalactiae 18RS21]
 gi|76585059|gb|EAO61693.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus
           agalactiae 18RS21]
          Length = 252

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 135/259 (52%), Gaps = 15/259 (5%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           + WV    +       A ++K  I + VA ++ +R + +      FL  ++  L  DP +
Sbjct: 6   YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI +AI N+E I+++GDYD DG  S ++M   L        +Y+P+R  DG
Sbjct: 64  LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           YGPN S+ + FI +    LIITVD G   ++A+ YA NQG+DV+V DHH + ++   AYA
Sbjct: 124 YGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAITYAQNQGVDVVVTDHHSMPADLPCAYA 183

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +++P   D      +L   GV F V   +   +              +LDLVA+ T+ D+
Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232

Query: 254 VPLIGLNRAYVVKGLMVAR 272
           V L   NR  V  GL V +
Sbjct: 233 VSLTDENRIMVKAGLEVMK 251


>gi|317133764|ref|YP_004089675.1| phosphoesterase RecJ domain protein [Ruminococcus albus 7]
 gi|315450226|gb|ADU23789.1| phosphoesterase RecJ domain protein [Ruminococcus albus 7]
          Length = 553

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 135/523 (25%), Positives = 217/523 (41%), Gaps = 43/523 (8%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A  +  A    +KI +F DYD DG  S  +M   L    ++  +Y P R + GYG     
Sbjct: 43  ADYLRNASDTKKKIAVFADYDCDGICSAVIMHVILKSLQIDFKIYFPKRGI-GYGLQKRY 101

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYALVNPNRL 200
           ++  I+E    +IT+D G ++++ +  A  +G+DVIVIDHH Q       A  +V+P+  
Sbjct: 102 ID-MIDEKYDAVITIDNGISAFEGIDAAKARGMDVIVIDHHLQSPEGLPNADIIVDPHVF 160

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260
            +       C AG+ + +  LI    RQ             L   A ATV DVVPL   N
Sbjct: 161 KEKENFEDWCGAGLGYELSKLICDEKRQKVC----------LQFAAFATVADVVPLRFNN 210

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIGESNLGS 318
           R  V  GL +        +  LI  +       +    +G+ IGP INA GR+ +     
Sbjct: 211 RTIVKNGLELINNSSVNSIHLLINEITGLGKPNVDETTIGFKIGPIINAMGRVEDDAEYV 270

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
               +  + E   +   +   N+ R+ +    +E+A+  V+ +C       +  +   + 
Sbjct: 271 YRYFTSGNPE---MLQHMVDNNEVRKELVIQAVERAQNIVVEECLFSDVPKI--IYDPKT 325

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437
             GIVG++A RL E +  P   ++  E  G   GS RS E  +I + +        L+  
Sbjct: 326 IEGIVGVVAGRLTETYKSPVICLTDSETPGVIKGSARSTEDINIKEALDKV--SDHLLHY 383

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           GGHA AAGL+++      + D F     +    +        D  +NA  +    + +L+
Sbjct: 384 GGHAGAAGLSLKIDELDNIRDCFFSIFEDF--EVQEKDEIFYDLEINAEEI-PDTLSLLK 440

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ-------AIAFRVYG 550
           +  P+G GN  PVF   N K    R      L       D + L+       AI F    
Sbjct: 441 AYAPFGEGNRPPVFKINNFKCL-PR---NGKL-FQILGDDGKALKLFGNGCIAIGFDAVE 495

Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
               +F   +  K + + G +  N + G    Q+ + D   V 
Sbjct: 496 ----KFNSLNMPKTLDIIGVISENNY-GKPEAQIEISDFKKVT 533


>gi|196227972|ref|ZP_03126839.1| phosphoesterase RecJ domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196227375|gb|EDY21878.1| phosphoesterase RecJ domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 345

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 160/313 (51%), Gaps = 12/313 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75
           RW+        +       +  +    A +L+ R +S    A+ FL P ++ L  DP +L
Sbjct: 3   RWIF-PQPIDSSEVKRFAGELGVARFAAELLMRRGLSSAMDAEHFLAPRLKSLR-DPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            +   AA RI+ AI   E+I+++GDYDVDG  S+AL+ R L         ++P R  +GY
Sbjct: 61  PNMGLAAERILTAIDRRERIVLYGDYDVDGVTSLALLTRVLRAMGAEPACFLPSRADEGY 120

Query: 136 GPNPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           G +P  + + +     QL+I VDCG++S   +     QG+DVIV DHH+ K       AL
Sbjct: 121 GLSPDGVARCVSEHDPQLVIAVDCGTSSVAEIAALRAQGVDVIVCDHHECKDALPDCVAL 180

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           VNP   DD     +LC+ G+ F V   + + LR+ N      DL   LDLVAL +V D+V
Sbjct: 181 VNPKLGDD---FHYLCSVGIAFKVAHALLK-LRKANDF----DLRECLDLVALGSVADLV 232

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
           PL   NR +V  GL+   +    GL+AL+E   +S+P +  N+G+ +GP +NA     + 
Sbjct: 233 PLRSENRIFVRNGLLQLAQSKWVGLRALVEVSGLSAPFSPGNIGFGLGPRLNAARTPRDR 292

Query: 315 NLGSRLLISDDSQ 327
              +  L     +
Sbjct: 293 ARCTGALAHRGCR 305


>gi|218961556|ref|YP_001741331.1| hypothetical protein CLOAM1265 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730213|emb|CAO81125.1| hypothetical protein CLOAM1265 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 520

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/483 (21%), Positives = 186/483 (38%), Gaps = 22/483 (4%)

Query: 36  KHAIP-DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94
              I  D++ +++ +RN++    +  L      ++PD  +  + DK   R+  A++ +E 
Sbjct: 9   NINISNDLLNQIIKSRNLTSLNLQTNL-----EMLPDEKLFANIDKVENRMRIALFENEP 63

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           ++IFG  D DG  S  ++  FL+ C       YIP+R ++ +G     +E       +LI
Sbjct: 64  MVIFGHDDPDGITSTYILYNFLNSCGYQKHCYYIPNRNLEPHGIQDGFIEFVRQNDYRLI 123

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
           +TVD G  S + ++     G +VI+ DHH        PA+ ++NP   +       L   
Sbjct: 124 VTVDNGIVSKEGVKNLNAMGCEVIITDHHIVQPDMLPPAFTIMNPQLPECPYPFKQLAGV 183

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
           GVV +++  + ++     +    F         A+ ++ D VP+IGLNR  V   L    
Sbjct: 184 GVVLMLIRYLGQLWNHPVEPASYFW-------TAVGSIADKVPMIGLNRILVRYVLEHFD 236

Query: 273 RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
              +  +  L+   N  + ++           + A GR       +   I   S      
Sbjct: 237 EVQDETVTFLLRNYNRINTMSDIFSFLQYTSHLIANGREPNGQHTAMRFILQLSDA---K 293

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
           A   + L   +   ES  L +    + T   D      +  + +   P  +   AA    
Sbjct: 294 ARLFEDLESQKNKWESE-LNRIFKFMDTLATDFVGNWFVYYDDEDVIPYTLLGTAATYVV 352

Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452
                   I    +G  +  GR  E F+I    +    +  L + GGH  AAG T++  +
Sbjct: 353 SKLHIPAIILKYNNGVTVCEGRCGEDFNIMDAFTHC--KKHLAQFGGHPRAAGFTMKPEH 410

Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512
           +    + F  F            +   D  +    +N      LE   P+G  NP P F 
Sbjct: 411 YDAFLECFNSFLQKNYHP-SKQEILSYDAEVCPKDLNWDNWKKLEILLPWGQLNPEPSFL 469

Query: 513 FPN 515
             N
Sbjct: 470 IRN 472


>gi|257468342|ref|ZP_05632436.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium
           ulcerans ATCC 49185]
          Length = 459

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 229/463 (49%), Gaps = 18/463 (3%)

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           + +GYG +   ++    E  +L+ITVD G  S + ++YA + GIDVIV DHH+   EE  
Sbjct: 1   MEEGYGLDKKTIDFINKEKGKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEED 60

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
            + L+   +L D     +L  AGV   V   +Y+ L+ D       DL   +D+V + TV
Sbjct: 61  DHLLLLNPKLSDTYEFKYLSGAGVALKVAQGVYQKLKID-----IKDLHQYMDIVMIGTV 115

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGG 309
            DVVP+   NR  + +GL   ++    GL  L++ +   +  I   ++ Y I P IN+ G
Sbjct: 116 ADVVPMTDENRIIIKQGLRALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLG 175

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G S +G+   + +D  E+  +  ++   N+ RR +E  + ++A  ++      ++   
Sbjct: 176 RVGISKMGADFFLKEDDFEIYNIIEEMKKSNKKRRELEKNIYDEANQEIAK--VGLKNLK 233

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
            I +  ++WHPG++G++++RL  K+  P   ++F++ G G  S RS++G  I     F  
Sbjct: 234 CIFLSSEKWHPGVIGVVSSRLSVKYNIPVTLVAFKD-GIGKASCRSVKG--ISVFNIFQN 290

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
               LV+ GGH +AAG  V+  NF  + + F+    N +         KID   +   ++
Sbjct: 291 MGKKLVRFGGHDLAAGFIVKSENFEEVKNIFEASIEN-IKIEKEKKSLKIDTEYSIENID 349

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547
             + + +ES  PYG  NP+P+F   +   ++I+       H       ++ +    +AF 
Sbjct: 350 EDMFETMESISPYGLENPHPLFIDRDLSFETIKKFGVDERHFNGIIR-KNGKNYHMVAFD 408

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + G  + E   +++ ++  +  +     +RG +  Q+RV D  
Sbjct: 409 L-GHKINEI--EAKIQKFDIVYYPEKTLYRGEEIFQIRVKDIK 448


>gi|283769652|ref|ZP_06342548.1| putative single-stranded-DNA-specific exonuclease RecJ [Bulleidia
           extructa W1219]
 gi|283103920|gb|EFC05306.1| putative single-stranded-DNA-specific exonuclease RecJ [Bulleidia
           extructa W1219]
          Length = 523

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 129/588 (21%), Positives = 236/588 (40%), Gaps = 81/588 (13%)

Query: 18  WVSLLGQEGINRALAITQKH---------AIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68
           W   + ++       +  K           I ++++    +R +    A   LN      
Sbjct: 2   WHKRIIEQNPYPVDNLVGKLLSMVSQDKEKIHEVLS---SSRQIMYSKAACVLNG----- 53

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
                         +R+ +A  N EK++I GDYD DG  S A+M   L    +    YIP
Sbjct: 54  -------------VQRLKKAKENKEKVLIAGDYDCDGVCSTAIMKYSLDQYGILNGYYIP 100

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           DR+ +GYG     +E    +G  LIITVD G  ++ A++ A   GI+VIV DHHQ++   
Sbjct: 101 DRVKEGYGLQVHTVELAKEKGYSLIITVDNGVKAFAAIEKAKELGIEVIVSDHHQIEEP- 159

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           +P   LV+P+ ++      +   AGV   +   +    ++            ++ L  +A
Sbjct: 160 VPVDILVHPDLMEKEY--RYFSGAGVALQISYYLIGEAKE------------MVVLAGVA 205

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            + DV+P     R  + K +   +      + AL + V   + I  + + + I P +N+ 
Sbjct: 206 ALGDVMPPFAQTRPLIQKAVQYLQEG---YMPALQKLVPKGNQINVQTIQFSIIPKLNSL 262

Query: 309 GRIGE---SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365
           GR+      N     L++ + +    +A ++D +NQ R+ +     ++ E KV       
Sbjct: 263 GRMSHLANVNQLVLYLLTRNEEAQIKMAKQIDHINQERKKVSQIKAKELEEKV------- 315

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           Q  ++ V+       G+ GL+A R+  K  RP   ++  +     GSGRSI G ++ + +
Sbjct: 316 QDQAIEVLYDPDLLEGVCGLIAGRITNKINRPCLVLTKTDGDMIKGSGRSIPGVNLFEAL 375

Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485
               +       GGH  A GL+V   NF    + +       V   +      I+     
Sbjct: 376 K---DFEFYEAFGGHEQACGLSVLEENFSAF-ENYVAEIQLAVNQEVGKEALWIETE--- 428

Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPN---HKLQSIRVVNLAHLQMTFESQDSETLQ 542
              +   +  L    PY +   NP     +      ++   +     +  FE  + E ++
Sbjct: 429 -DFSFQAVQSLMKLEPYPSEWKNPFVWIEHPSQIVFRNYPSMQ----KYEFEV-NGEKVE 482

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           A+             +Q+  K  +  G L +N +R  ++ Q+ + D  
Sbjct: 483 AV-------LYANKGIQADSKATNFIGTLSMNSFRNQEKIQMIIEDLW 523


>gi|256004891|ref|ZP_05429865.1| phosphoesterase RecJ domain protein [Clostridium thermocellum DSM
           2360]
 gi|255991201|gb|EEU01309.1| phosphoesterase RecJ domain protein [Clostridium thermocellum DSM
           2360]
          Length = 318

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 9/301 (2%)

Query: 40  PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
            ++VAR+  NR   + +  +  LNP +  +   P    D  +A  RI++A  N EKI ++
Sbjct: 25  DELVARIFYNRGYKNPETIRQMLNPELY-VPTKPDEFPDMPRAVDRILRAADNEEKICVY 83

Query: 99  GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           GDYDVDG  S   ++  L+  +     ++PDR  +GYG N  ++ K   +G  LIIT DC
Sbjct: 84  GDYDVDGVTSTVTLVECLNFFTSKVVYHVPDRFTEGYGMNEEIVRKLAQDGVSLIITCDC 143

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G ++   +  A   G+DV++ DHH V  E  PA A++NP  L++     ++   G+V+ +
Sbjct: 144 GISNVREITLAKELGMDVVLTDHHTVPDELPPADAILNPKLLEEGHRARNISGCGMVYFL 203

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278
            + +                   LD++AL+ + DVV L G NR  + K L         G
Sbjct: 204 CLALLEKKG------FPDRAERFLDMLALSLIADVVSLNGENRYLLQKALPALFNTRRIG 257

Query: 279 LKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337
           L+ L+E    +  +   E++ + I P INA GR+  + L   L      ++  +   KL 
Sbjct: 258 LRQLLEVAERNGKLENEEDVAFQIAPRINAAGRMDTARLPVELFYVRTWKKHALWLRKLT 317

Query: 338 V 338
            
Sbjct: 318 H 318


>gi|24215698|ref|NP_713179.1| single-stranded DNA exonuclease [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196869|gb|AAN50197.1| single-stranded DNA exonuclease [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 643

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 114/608 (18%), Positives = 222/608 (36%), Gaps = 81/608 (13%)

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
           +  L   +R L P P +L D + A   + + I   +KI++FGD D DG +S +L+  FL 
Sbjct: 44  EHLLYHGLREL-PSPFLLPDLEPALDLLKEFIQKEKKILLFGDRDCDGVSSTSLLGSFLK 102

Query: 118 HC----------------------------------------------------SVNA-- 123
                                                                  +    
Sbjct: 103 KIHRGELILKTSNEEDYGLCPAALDFVKRIKPDLLITLDFGTTNHIQIDELASIGIKVIV 162

Query: 124 --NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             +  IP+RI D Y  +P   +            +                     + D 
Sbjct: 163 LDHHEIPERIPDCYLISPKRSDSIYPNEKICTSVLALKFIQAYLYSSLEEYNRATWIGDG 222

Query: 182 HQ--VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
           +             L   +R +  S                   R       +     L 
Sbjct: 223 NSLFSGFLIYRGKLLFQGDRQEAESKFSLTIQDESYSFQSSYPEREWFYQEFLKYPAILE 282

Query: 240 SLL---DLVALATVCDVVPLIGLNRAYVVKGLMVARR------QGNPGLKALIERVNI-S 289
             L   DL ++ TV D++PL G NR  V +G  +  +          GL  L++ +    
Sbjct: 283 QYLQNFDLASIGTVSDMMPLYGENRIIVREGCKILFKLHKKETSHREGLFQLLQLMEFAD 342

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
           + +T+++LG+ +GP IN+ GR+  +++   LL+ ++ +  +  A +L  LN+ R+     
Sbjct: 343 NRVTSKDLGWGLGPMINSAGRMNRTDVALNLLLEENPELAKSGAKELQKLNEERKERTKR 402

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
            + + ++ +  +  +  + SV+      + PG+ G++A RL E++ RP   I+  + G  
Sbjct: 403 NIFKVDSFLKRK-KERTERSVLFCYEPDFEPGVSGIVATRLVEEYKRPVLFITP-DHGHA 460

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GS R+    ++  ++  A  E + ++ GGH  A G ++E      L       A N + 
Sbjct: 461 KGSIRAYGKENVLNLLKKA--ESVFLQFGGHKEAGGFSLEIDKIPELAKLIFDNADNWLA 518

Query: 470 ALITTPVFK-IDGVLN--ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-N 525
               T   +  + +++     +N  +   L    P+G  NP P+++  N K+   + + +
Sbjct: 519 EEQMTSTSEQTESLISLKPEELNPKIFQELSIFEPFGHENPIPLYSIKNAKIYHTKPMTD 578

Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
             H++        E++Q + +      L    + S+   + + G L  + +R     Q  
Sbjct: 579 GKHVRFRILGAP-ESIQCLIWNRGKDFLE---LISKSVSLDLWGSLEESTFRSKTSLQFI 634

Query: 586 VLDASPVE 593
           V      E
Sbjct: 635 VNYFQESE 642


>gi|56751012|ref|YP_171713.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus
           PCC 6301]
 gi|81299328|ref|YP_399536.1| exonuclease RecJ [Synechococcus elongatus PCC 7942]
 gi|56685971|dbj|BAD79193.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus
           PCC 6301]
 gi|81168209|gb|ABB56549.1| exonuclease RecJ [Synechococcus elongatus PCC 7942]
          Length = 775

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 141/559 (25%), Positives = 249/559 (44%), Gaps = 46/559 (8%)

Query: 41  DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT-DCDKAARRIVQAIYN-SEKIMI 97
           +++A+++  R + +      FLNP  R L   P     + D A  R++QA  N  ++++I
Sbjct: 31  EVLAQLIWQRQLATPASLAGFLNPD-RYLPTGPEAFGVEMDGAIARLLQAHANPDDRLLI 89

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           +GD+D DG  + A++   L             IPDR+   +G N   +E+ I  G  L+I
Sbjct: 90  WGDFDADGLTATAVLWEGLGQYFPQTERLFWTIPDRLQQSHGLNLEGLEQAIANGITLVI 149

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           T D G +  + LQ+A+++G+DVIV DHH +  E  P  AL+NP +L        L    V
Sbjct: 150 TCDTGCSDAELLQWASDRGLDVIVTDHHTLLPERPPVTALINPRQLPTDHPLATLSGVAV 209

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM----- 269
            + ++  +Y+ L      P    L  LLDLVA+  + D+V L G  R    +GL      
Sbjct: 210 AYKLIEALYQALPLATAQP----LEHLLDLVAIGLIADLVDLRGDCRYLAQRGLQQLQQL 265

Query: 270 ---VARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IGESNLGSRLLISDD 325
                +    PG+  L+ R   S      ++ + +GP +NA  R  G+++L  +LL S D
Sbjct: 266 AQVRPQASRRPGITELLNRCRGSGD-RPTDIRFGLGPRLNAVSRLQGKADLALQLLTSRD 324

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385
                 LA +++ LNQ R+ ++  +L + E ++  Q       + +V+ G+ WH G++GL
Sbjct: 325 PTAARRLAQQVEELNQRRQRLQRDLLRELEPQIQQQR----DRAALVLVGEGWHGGLLGL 380

Query: 386 LAARLKEKFGRPSFAISFEEDGKG----IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           +A+++  +  +P+  +S +          GS RSI G ++ ++   A +  +L++ GGH 
Sbjct: 381 VASQVAHREDKPTLVLSLDPPKTQPRLARGSARSITGLNLYEL--LANQRSLLLRFGGHP 438

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
            AAGLT+   +   L +  ++      P   +      +  ++ + ++  L   L +  P
Sbjct: 439 QAAGLTLIDEHLPLLREALEQRL-QQYPPDRSQAAIAPELTVSVADLDRPLFRALYALEP 497

Query: 502 YGAGNPNPVFAFPNHKLQS--IRVVN-----LAHLQMTFESQDSETLQAIAFRVYGTPLG 554
               +  P       +LQ      V        +              AIA   Y     
Sbjct: 498 C---DRLPQLEVRRCRLQRQWQNSVGSGPYRRQYWTFQITDDRG----AIAQGQYWPESN 550

Query: 555 EFLMQSRGKRMHVTGHLCV 573
              +   G R  +   L +
Sbjct: 551 AETLPPEGDRCDLVIELDL 569


>gi|45656950|ref|YP_001036.1| single-stranded DNA exonuclease [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600187|gb|AAS69673.1| single-stranded DNA exonuclease [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 643

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 114/608 (18%), Positives = 222/608 (36%), Gaps = 81/608 (13%)

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
           +  L   +R L P P +L D + A   + + I   +KI++FGD D DG +S +L+  FL 
Sbjct: 44  EHLLYHGLREL-PSPFLLPDLEPALDLLKEFIQKEKKILLFGDRDCDGVSSTSLLGSFLK 102

Query: 118 HC----------------------------------------------------SVNA-- 123
                                                                  +    
Sbjct: 103 KIHRGELILKTSNEEDYGLCPAALDFVKRIKPDLLITLDFGTTNHIQIDELASIGIKVIV 162

Query: 124 --NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
             +  IP+RI D Y  +P   +            +                     + D 
Sbjct: 163 LDHHEIPERIPDCYLISPKRSDSIYPNEKICTSVLALKFIQAYLYSSLEEYNRATWIGDG 222

Query: 182 HQ--VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
           +             L   +R +  S                   R       +     L 
Sbjct: 223 NSLFSGFLIYRGKLLFQGDRQEAESKFSLTIHDESYSFQSSYPEREWFYQEFLKYPAILE 282

Query: 240 SLL---DLVALATVCDVVPLIGLNRAYVVKGLMVARR------QGNPGLKALIERVNI-S 289
             L   DL ++ TV D++PL G NR  V +G  +  +          GL  L++ +    
Sbjct: 283 QYLQNFDLASIGTVSDMMPLYGENRIIVREGCKILFKLHKKETSHREGLFQLLQLMEFAD 342

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
           + +T+++LG+ +GP IN+ GR+  +++   LL+ ++ +  +  A +L  LN+ R+     
Sbjct: 343 NRVTSKDLGWGLGPMINSAGRMNRTDVALNLLLEENPELAKSGAKELQKLNEERKERTKR 402

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
            + + ++ +  +  +  + SV+      + PG+ G++A RL E++ RP   I+  + G  
Sbjct: 403 NIFKVDSFLKRK-KERTERSVLFCYEPDFEPGVSGIVATRLVEEYKRPVLFITP-DHGHA 460

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GS R+    ++  ++  A  E + ++ GGH  A G ++E      L       A N + 
Sbjct: 461 KGSIRAYGKENVLNLLKKA--ESVFLQFGGHKEAGGFSLEIDKIPELAKLIFDNADNWLA 518

Query: 470 ALITTPVFK-IDGVLN--ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-N 525
               T   +  + +++     +N  +   L    P+G  NP P+++  N K+   + + +
Sbjct: 519 EEQMTSTSEQTESLISLKPEELNPKIFQELSIFEPFGHENPIPLYSIKNAKIYHTKPMTD 578

Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585
             H++        E++Q + +      L    + S+   + + G L  + +R     Q  
Sbjct: 579 GKHVRFRILGAP-ESIQCLIWNRGKDFLE---LISKSVSLDLWGSLEESTFRSKTSLQFI 634

Query: 586 VLDASPVE 593
           V      E
Sbjct: 635 VNYFQESE 642


>gi|295111723|emb|CBL28473.1| Single-stranded DNA-specific exonuclease [Synergistetes bacterium
           SGP1]
          Length = 547

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 239/572 (41%), Gaps = 44/572 (7%)

Query: 28  NRALAITQKHAIPDIVARVL--VNRN--VSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
               ++ +     ++ A VL  + +   + I  A+D++NP    L+    +      A  
Sbjct: 12  ESTRSLARCVPCSELTAMVLQMMQQGGVMDIADAQDWMNPKFERLLDSLDL--GAASAVA 69

Query: 84  RIV-QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
           R    A  +   ++I+GDYD DG +S  L M    H +V    +IP R V GYG N  ++
Sbjct: 70  RDKWNAKSSLGNVLIYGDYDTDGISSTVLAMEIFRHKAVQVRYFIPRRDVQGYGLNAEVL 129

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           E+ +  G   ++ VDCG+   + L+    +G+DV V DHH V     PA+  +     D 
Sbjct: 130 EQVVRGGCNTLVVVDCGTNDSEMLEDLERRGLDVFVFDHHAVAE--APAFQAIVNPCADG 187

Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262
                 LCA  V++               +     L   LDLVALAT+ D +PL  LNR+
Sbjct: 188 GGKARKLCATAVLWCWAW--------KEGILPRDWLKYALDLVALATISDCMPLNSLNRS 239

Query: 263 YVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           +V +G+ + R     GL AL  R+ ++   IT E L   + P +NA GRI  +++  R L
Sbjct: 240 FVRRGMRLMRTNPRRGLGALFSRLRLNARQITEEQLSMRVIPCLNAPGRISCADVSVRAL 299

Query: 322 ISDDSQEL-EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           +     +     A +L  +N+ R+            ++     +  +    V+  + W  
Sbjct: 300 LGVGGDDAVYECAGELIKMNRRRQ--------MISERIAGNIRESGEDDRHVMFDESWPV 351

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440
           G++  +A+R+  +  R + A++     K  G+ R   G +   ++S      +L   GGH
Sbjct: 352 GVLSGVASRICAQ-RRSAVALAAPVGEKVRGTLRVPTGGNAVGILSE--ISDLLDAWGGH 408

Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500
             AAG +V   N+  +    +    ++               L+ + +++     + + G
Sbjct: 409 RYAAGFSVLARNWDEVEGRLEGLLADVGVEDEVVSAIN----LSPARISLDDWRTVTALG 464

Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560
           P+G  NP P+F   +     +  +            + + L   AF          L  +
Sbjct: 465 PFGNDNPCPLFYCASSGEDRVEPLGKDGKHSAVRVDNVKLL---AFNAAPD-----LQDT 516

Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            G +     H  ++YWR  ++ Q  + D + V
Sbjct: 517 SGIKGW-VYHPRLDYWRNEEQIQFIL-DYAVV 546


>gi|269792824|ref|YP_003317728.1| phosphoesterase RecJ domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100459|gb|ACZ19446.1| phosphoesterase RecJ domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 545

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/552 (25%), Positives = 241/552 (43%), Gaps = 45/552 (8%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIR-LLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
              ++ V   R    +    +L   ++  L   PL   +  +A + I   +   E+++I+
Sbjct: 23  SQFLSAVAGIRGWGEEEFLSWLWADLQQELEAIPLAEPEV-RALQVISS-VRPGERVIIY 80

Query: 99  GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           GDYDVDG ++  L M  +         +IP R ++GYG + +   K    G  L++ VDC
Sbjct: 81  GDYDVDGLSATTLAMELMLARGAAVRYFIPHRFLEGYGFHVNTARKIAARGCDLLLVVDC 140

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
           G+   +AL+     GI  +V DHH      +P   LVNP+  D  +    LCAAGV++  
Sbjct: 141 GTKDVEALEVIDQAGIPTVVFDHHTPGDG-LPKGVLVNPHCFDLPTPLTALCAAGVLWSW 199

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQGNP 277
           +          +++       + LDL  LATV D + L   LNR  V +GL + RR    
Sbjct: 200 IW--------RSRIMDRSWTAARLDLACLATVADCMDLSVPLNRCIVKEGLKLIRRSPRR 251

Query: 278 GLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           G+ AL+ R+ +    +  E L   + P +NA GR+  +    RLL   D   +E L  ++
Sbjct: 252 GIGALLGRLGVEPQDVDEEVLSMKLIPCLNAPGRLDLAEEAVRLLYPGDGS-VEPLVDRV 310

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
             LN+ RR + S +++ A+  +             V  G  W  G++  +A+RL    GR
Sbjct: 311 LSLNEERRRLSSVIMKDAQGDLDR----------HVYHGKDWPVGVLSSVASRLCNDRGR 360

Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456
           P   ++   DG   G+ R   G     +   +    +L   GGH  AAG +V+R ++  +
Sbjct: 361 PVALVAPAGDGL-RGTLRIPNGAG-DAVKILSRMSHMLSAFGGHRCAAGFSVQRHHWEAV 418

Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP-N 515
            +  +     +        V           ++ ++ + L++ GP+G GNP P+   P  
Sbjct: 419 REGLEAALRELPSDRCRLDVIHW----PLDRIDQSMEEDLDALGPFGMGNPAPLLYHPGG 474

Query: 516 HKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
            +++    +          +Q  E    +AF    +PL    M++RG    +     +  
Sbjct: 475 FQVE---PMGRTGRVSKLLAQGREI---VAF---ASPLELQGMEARG----IVYRPKMEA 521

Query: 576 WRGSKRCQLRVL 587
           WRG +R +L + 
Sbjct: 522 WRGRRRLKLYLE 533


>gi|325525094|gb|EGD02987.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp.
           TJI49]
          Length = 343

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 118/356 (33%), Positives = 173/356 (48%), Gaps = 20/356 (5%)

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLG 298
           +LDLVAL TV DVV L G NR  V +GL   R  +  PG+ AL       +   +  +LG
Sbjct: 1   MLDLVALGTVADVVRLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLG 60

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + +GP +NA GR+ + +LG   LI+DD      LA +LDV+N+ RR +E+ M +QA A +
Sbjct: 61  FGLGPRLNAAGRLSDMSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADL 120

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSI 416
                D   A  I +    WH G++G++A RLKEKF RPSF  +  ++      GSGRSI
Sbjct: 121 AD--VDPADACTITLFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSI 178

Query: 417 EGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
            GF +   +      E  +LV  GGHAMAAG+T++  N  R    F+  A   +      
Sbjct: 179 PGFHLRDALDLVSKREPDLLVAFGGHAMAAGVTLDADNVPRFAAAFEAVAREWLSDDALA 238

Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE 534
            V + DG L  +      + +L+    +G G P P+F+     + S  +V   HL++   
Sbjct: 239 RVIETDGELEDAYFTPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL- 295

Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           ++  +   AI F          L         +   L  + W G  R QL V  A+
Sbjct: 296 ARGRQRFNAIWFNHTEPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 342


>gi|167720341|ref|ZP_02403577.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei DM98]
          Length = 344

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/356 (32%), Positives = 176/356 (49%), Gaps = 20/356 (5%)

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLG 298
           LLDLVAL TV DVV L G NR  V +GL   R        A + R       +A   +LG
Sbjct: 3   LLDLVALGTVADVVRLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAARDARSASGFDLG 62

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + +GP +NA GR+ + +LG   L +DD      LA +LD +N+ RR +E+ M +QA A +
Sbjct: 63  FGLGPRLNAAGRLSDMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADL 122

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSI 416
            +   D  +A+ I +    WH G++G++A RLKE+F RP+F  +  +DG     GSGRSI
Sbjct: 123 AS--VDPAEAATITLFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSI 180

Query: 417 EGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
            GF +   +      E  ++V  GGHAMAAG+T+E  N  R    F+  A   +      
Sbjct: 181 PGFHLRDAIDLISKREPDLIVTFGGHAMAAGVTLETANVPRFAAAFETVAREWLSDDALA 240

Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE 534
            V + DG L  +     ++++L+ A  +G G P P+F+     + S  +V   HL++   
Sbjct: 241 RVIETDGDLEDAYFTPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL- 297

Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           ++  +   AI F                 R  +   L  + W G+ R QL V  A+
Sbjct: 298 TRGRQRFNAIWFNHAE---------PLPARATLAFRLASDTWNGTTRVQLIVEHAA 344


>gi|205374212|ref|ZP_03227011.1| single-stranded-DNA-specific exonuclease [Bacillus coahuilensis
           m4-4]
          Length = 450

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 160/313 (51%), Gaps = 13/313 (4%)

Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351
           +  E +G+ IGP +NA GR+ +++    LL++DD +E   +A ++D +N+ R+ + S + 
Sbjct: 4   LNEEGVGFTIGPRLNAIGRLSDADPAVDLLLTDDMEEALAIAEEIDQMNKERKNIVSTIT 63

Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGI 410
           E+A   V TQ   ++  SV+V+  + W+PG+VG++A+RL ++F RP+  +  + E G   
Sbjct: 64  EEAIEMVETQFP-LEDHSVLVLAKEGWNPGVVGIVASRLVDRFYRPTIVLGIDSEKGIAK 122

Query: 411 GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
           GS RSI GFD+    + +    +L   GGH MAAG+T+   +   L       A   +  
Sbjct: 123 GSARSIVGFDL--FQNLSTMRELLPHFGGHPMAAGMTLNIEDVNELRARLNTLAKETLTE 180

Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAH 528
               P+ ++D  +    V++  I+ L+   PYG GNP P F   N  + +++ +     H
Sbjct: 181 EDFVPLTEVDTHVTLDEVSLKSIEELDLLSPYGMGNPKPKFVIDNVHIGNMKKIGGNGNH 240

Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVL 587
           L++     +  +L  I F      LGE   Q     ++ + G L +N W   K+ QL + 
Sbjct: 241 LKLNVIH-NGTSLDGIGF-----HLGELTEQLSPVSQISLMGELAINEWNSMKKPQLFIK 294

Query: 588 DASPVEGHHFAKK 600
           D +  +   F  +
Sbjct: 295 DINVSDWQLFDVR 307


>gi|305432543|ref|ZP_07401704.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli
           JV20]
 gi|304444254|gb|EFM36906.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli
           JV20]
          Length = 385

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 99/409 (24%), Positives = 199/409 (48%), Gaps = 27/409 (6%)

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
             +     A+A++NP + D       +C A V + ++  +  + +        +D+   L
Sbjct: 1   MPQDTLPDAFAIINPKQKDCDFPDIEICGAQVAWYLIAALKEVCKLK------YDMGKFL 54

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           +L+A+A V D++ L  LNRA V +G+    +      KA+ ++         +N+G++I 
Sbjct: 55  ELLAIAIVADMMELRDLNRALVRRGIECINKSKRVAFKAI-KQYYQKDKFALDNIGFLIA 113

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P IN+ GR+ ++++    L + D  +      ++   N++R+  E  + E + +++    
Sbjct: 114 PLINSAGRMDDASISYEFLHTKDLDKASAYLEQIISFNESRKDEEKQLFEDSLSQI---- 169

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
              +  S IVV G  WH G++G++A+RL + F +P+F  S  +  +  GS RS+   DI 
Sbjct: 170 --DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNDQ-RLKGSARSVGKIDIL 226

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            ++S A    IL   GGH  AAGL+++  +F +     +K    I  +       +I G+
Sbjct: 227 ALISKANF--ILSNYGGHKGAAGLSLDLDSFEKFKTIIKKECMEISQSEFL-DTDEILGI 283

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSET 540
           L+ + ++  ++++LES  P+G  NP P F   N  +++ + +     HL++   ++D++T
Sbjct: 284 LDPNEIDFEMLEILESFEPFGHKNPRPFFILENLYVKNKKFLGKDEKHLKLIL-TKDNKT 342

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
           ++A+ F     P          + + + G +  N +RG    Q  + + 
Sbjct: 343 IEALFFNFDKEP-------QLYENISLLGSISKNEFRGLATPQFIIKEI 384


>gi|327197905|ref|YP_004306222.1| putative single-stranded DNA exonuclease [Lactococcus phage 949]
 gi|306009225|gb|ADM73620.1| putative single-stranded DNA exonuclease [Lactococcus phage 949]
          Length = 593

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 130/625 (20%), Positives = 250/625 (40%), Gaps = 89/625 (14%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +   +R   +           ++L  R + ++  ++FL P  +     P  + 
Sbjct: 3   KWIQKKAKIKADREDDLK---------TKILKARGIPLEDHQEFLFPDEKWENH-PFEIR 52

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM---MRFLSHCS-VNANMYIPDRIV 132
           + ++A  RI++ I + E I++ GD D DG  + A+M   ++ L   +  N +   P R  
Sbjct: 53  NVERAVNRILEGIADKETIVVSGDPDADGITATAIMFNRLKALQDFNEFNLDYIYPQR-D 111

Query: 133 DGYGP------------------------NPSLMEKFIN---------EGAQLIITVDCG 159
            G+G                         + +  EK I+         + A ++I +D  
Sbjct: 112 TGHGLYGQLSVQDHWLNKAEKAKAEKDKESLAKWEKLIDLSRSNIEKTKVADILIVLDSS 171

Query: 160 STSYDALQYATNQG--IDVIVIDHHQVK-----SEEIPAYALVNPNRLDDLSGQGHLCAA 212
           S     ++ A      +D+I++DHH+       ++      L NP+   D S    L  A
Sbjct: 172 SNDLKGVERARTLNPDLDIIILDHHEFDSKEIANKMDKEVILCNPHHHLDESVNKDLSGA 231

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVA 271
           G+ + V   I  +L  D             DLVA+  V D++ ++   NR  + +GL   
Sbjct: 232 GMAYKVAKGIDEVLDDDGFSN------KFRDLVAIGLVGDMMSVLNFENRYLISQGLQNV 285

Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
              G    + L      +     +++GY I P IN+  R+GE  L  ++L+ D+  + + 
Sbjct: 286 NNIG--LSRILKGAKINTYRYNTKDIGYSIAPLINSSARMGEIELAFQILMVDNDTDAKK 343

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           L +K+D LN+ R+  +      A  +      +++   VIV++ +  + G+ GL+A  + 
Sbjct: 344 LRLKMDKLNKKRQETQK-----AVMQKYEDTQNMEDKIVIVIDSES-NKGMNGLVAQNIA 397

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
           +K+ RP F ++  +DG   GSGRS   F+  + +S        V+  GH  A GL     
Sbjct: 398 QKYHRPCFVVTEGKDGICRGSGRSYGSFNTNEFLSEL----DFVEAQGHGQAHGLNFPLD 453

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVL-NASAVNIALIDMLESAGPYGAGNPNPV 510
               L ++ ++   + +        F  D  L N     + L D++      G   P  V
Sbjct: 454 RLDDLKEYIEENMPDNLETEQ---TFYYDIELENIEEAFMDLTDLININYITGNKFPEVV 510

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
               N  ++   V+      + F++        I F+V      +         + V G+
Sbjct: 511 VRMNNVMIEERAVIGKTKETVKFKTSGDLVF--IKFKVNEDWNKDIDTF---DTVSVVGN 565

Query: 571 LCVNYWRG------SKRCQLRVLDA 589
             +N +        ++  Q+ ++D 
Sbjct: 566 GTINEFYNFATKEMTRTPQIIIMDI 590


>gi|21465637|pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
          Length = 424

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/422 (28%), Positives = 190/422 (45%), Gaps = 29/422 (6%)

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
             ++I + GDYD DG    A+++R L+    + + +IP R+ +GYG     + + +   +
Sbjct: 32  QGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-AS 90

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            L +TVDCG T++  L+     G++VIV DHH       P   +      D    +    
Sbjct: 91  DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPD---LKEKPT 147

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270
            AGV FL+L  ++  L            L   DL A+ T+ DV PL G NRA V +GL  
Sbjct: 148 GAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPLWGWNRALVKEGLAR 200

Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
                  GL+ L E V  +       + + I P INA  R+GE+    RLL++DD+ E +
Sbjct: 201 IPASSWVGLRLLAEAVGYTGKAVE--VAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQ 258

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
            L  +L  LN  R+ +E AML +   +         +A  IV+     HPG++G++A+R+
Sbjct: 259 ALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRI 312

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
            E   RP F ++        G G       I  + +    E +L++ GGH  AAG  ++ 
Sbjct: 313 LEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDE 365

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
             F       + +A      +    +  +   L    +   +   L    PYG GNP P+
Sbjct: 366 ALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFRELALLEPYGEGNPEPL 422

Query: 511 FA 512
           F 
Sbjct: 423 FL 424


>gi|255985658|gb|ACU46843.1| putative single-stranded DNA specific exonuclease [Lactococcus
           phage CB13]
          Length = 593

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/630 (20%), Positives = 250/630 (39%), Gaps = 99/630 (15%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76
           +W+    +   +R   +           ++L  R + ++  ++FL P  +     P  + 
Sbjct: 3   KWIQKKAKIKADREDDLK---------TKILKARGIPLEDHQEFLFPDEKWENH-PFEIR 52

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM---MRFLSHCS-VNANMYIPDRIV 132
           + ++A  RI++ I + E I++ GD D DG  + A+M   ++ L   +  N +   P R  
Sbjct: 53  NVERAVNRILEGIADKETIVVSGDPDADGITATAIMFNRLKALQDFNEFNLDYIYPQR-D 111

Query: 133 DGYGP------------------------NPSLMEKFIN---------EGAQLIITVDCG 159
            G+G                         + +  EK I+         + A ++I +D  
Sbjct: 112 TGHGLYGQLSVQDHWLNKAEKAKAEKDKESLAKWEKLIDLSRSNIEKTKVADILIVLDSS 171

Query: 160 STSYDALQYATNQG--IDVIVIDHHQVK-----SEEIPAYALVNPNRLDDLSGQGHLCAA 212
           S   + ++ A      +D+I++DHH+       ++      L NP+   D S    L  A
Sbjct: 172 SNDLEGVERARTLNPDLDIIILDHHEFDSKEIANKMDKEVILCNPHHHLDESVNKDLSGA 231

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVA 271
           G+ + V   I  +L  D             DLVA+  V D++ ++   NR  + +GL   
Sbjct: 232 GMAYKVAKGIDDVLDDDGFS------DQFRDLVAIGLVGDMMSVLNFENRYLISQGLQNV 285

Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
              G    + L      +     +++GY I P IN+  R+GE  L  ++ + D+  + E 
Sbjct: 286 NNVG--LSRILKGAKINTYRYNTKDIGYSIAPLINSSARMGEIELAFQIFMVDNDTDAEK 343

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           L +K+D LN+ R+  +      A  +      D++   VIV++ +  + G+ GL+A  + 
Sbjct: 344 LRLKMDKLNKKRQETQK-----AVMQKYEDTQDMEDKIVIVIDSES-NKGMNGLVAQNIA 397

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
           +K+ RP F ++  +DG   GSGRS   F+  + +S        V+  GH  A GL     
Sbjct: 398 QKYHRPCFVVTEGKDGVCRGSGRSYGSFNTNEFLSEL----DFVEAQGHGQAHGLNFPLD 453

Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVL-NASAV-----NIALIDMLESAGPYGAG 505
               L ++ ++   + +        F  D  L N         ++  I+ +      G  
Sbjct: 454 RLDDLKEYIEENMPDNLETEQ---TFYYDIELENVEEAFMALTDLTNINYIT-----GNN 505

Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
            P  V    N  ++   V+      + F++        I F+V      +         +
Sbjct: 506 FPEVVVRMDNVMIEERAVIGKTKETVKFKTSGDLVF--IKFKVNEDWNKDIDTF---DTV 560

Query: 566 HVTGHLCVNYWRG------SKRCQLRVLDA 589
            V G+  +N +        ++  Q+ ++D 
Sbjct: 561 SVVGNGTINEFYNFGTKEMTRTPQIIIMDI 590


>gi|294624922|ref|ZP_06703577.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600801|gb|EFF44883.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 358

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 17/362 (4%)

Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISS-PITAENLG 298
           LLDLVA+ TV D+VPL   NRA V  GL   R      GL+ALI+        ++A ++G
Sbjct: 2   LLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGCIGLRALIDASGRDVARLSASDIG 61

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + +GP +NA GR+ +  LG  LL+S+D  +   +A  L+ +N  RR ++  M + AE  V
Sbjct: 62  FALGPRLNAAGRLEDMALGIELLLSEDWGQAREIAGTLEEINAERRAVQQLMTDDAEHAV 121

Query: 359 LTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGR 414
                D          +    WHPG++GL+A++LK++  RP  A++  E G     GS R
Sbjct: 122 TKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDRLHRPVIALAPAEPGSSQLRGSAR 181

Query: 415 SIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
           SI G  I  +++   A   G++ K GGHAMAAGL+++          FQ     +V A +
Sbjct: 182 SIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSIDHAALATFEQAFQAQVTAMVDASL 241

Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT 532
                  DG L A  ++    + L  AGP+G G P P+F     ++   RV+   HL++T
Sbjct: 242 LHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEPLFDGQ-FEVLQHRVLKERHLKLT 300

Query: 533 FESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                  E L AI F  +       L       + +   L  + +RG    QL V    P
Sbjct: 301 LRCPGRAEPLNAIHFNGWRGSDPARL-------VRLAYRLVADDYRGGTAVQLIVEHCEP 353

Query: 592 VE 593
             
Sbjct: 354 AT 355


>gi|255027933|ref|ZP_05299919.1| hypothetical protein LmonocytFSL_18891 [Listeria monocytogenes FSL
           J2-003]
          Length = 212

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 4/210 (1%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72
           S + W      E   +A  + ++  I   +A++L  R ++       F +P       DP
Sbjct: 4   SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +  + D A  RI QAI  +E+I+++GDYD DG  S+A++M+ L H   +A+ YIP+R  
Sbjct: 61  FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           +GYGPN +  +   N+G  LIITVD G  + + + +A   G+DVIV DHH+ +     A 
Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           A+++P           L   GV + +   +
Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL 210


>gi|289523399|ref|ZP_06440253.1| putative single-stranded DNA-specific exonuclease [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503091|gb|EFD24255.1| putative single-stranded DNA-specific exonuclease [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 550

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 127/571 (22%), Positives = 228/571 (39%), Gaps = 58/571 (10%)

Query: 31  LAITQKHAIPDIVA---RV-LVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
             +       ++ A   R+   +R + I  A+ +L PS+  L+    +     +A    +
Sbjct: 20  RELVDSLQCHELTALTLRIKYGDR-LDISKARAWLRPSLNSLLASLFLCEG-GEAVFPTL 77

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
           +A+    K+ ++GDYDVDG AS  L   F      +   Y+P R+ DGYG NP++++   
Sbjct: 78  RALPKGSKVALYGDYDVDGVASALLASEFAREKGWHVRYYLPHRLKDGYGLNPNVVKVIA 137

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
             G  L+I  DCGS +   +  A + G+ V V DHH V         +      D+ + +
Sbjct: 138 RMGFDLLIVTDCGSKNEKEIDLALDMGLKVAVFDHHLVDKICHRECIINPHIGGDEEARK 197

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
                    +L    +               LL  LD+V+L+ V D +PL  LNRA V +
Sbjct: 198 LSAAGVLWCWLWQSGLVSQ----------DWLLDRLDIVSLSVVGDSMPLGLLNRALVRE 247

Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           GL        PGL+ L ++++I  PI    L   + P +N+ GRI  +    + L  + S
Sbjct: 248 GLKRLETTQRPGLRYLFDKLSIIYPIDENQLAMKLNPCLNSAGRISLAETALKAL--EHS 305

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
           +E    A++L  LN  R+ +   +  QA   +             VV+   W  G++  +
Sbjct: 306 RESIKAALELVNLNYQRKKLSGELYNQATTGLR------DGRFKFVVDSAHWPLGLLSSV 359

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           A+RL  +F RP   ++ +  G    S R  EG +  +++        L   GGH  AAG 
Sbjct: 360 ASRLCYEFNRP-IVLAAQNGGNVRASLRVPEGLNAIEILEK--ISSHLKSWGGHKGAAGF 416

Query: 447 TVERVNFGRLCDFFQK---------FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497
           +V+   +  +    ++                A+   P             ++ L +   
Sbjct: 417 SVDAKGWHEVKKKLEESLSKCCLLGSVSENEDAISFEPKMW----------DLHLWERFR 466

Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556
              P+G GN  P F   +     ++ +   +H ++      S + + + F          
Sbjct: 467 ELAPFGEGNEMPYFFISHQYDDVMKPLRGGSHYRLL-----SRSGEVLIFNFSEAE---- 517

Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
             + +G+         V+ + G  +  ++  
Sbjct: 518 --KYKGRIKGWLYRPFVDAFGGKLKLSMKAE 546


>gi|295104955|emb|CBL02499.1| Single-stranded DNA-specific exonuclease [Faecalibacterium
           prausnitzii SL3/3]
          Length = 580

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/597 (19%), Positives = 217/597 (36%), Gaps = 66/597 (11%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
           ++ + D +  ++ NR V        L+ S    +  P  L + + A R + + I+N   I
Sbjct: 10  RNDLSDPIGTIMENRGVKDYKIYMNLDDSC---LNSPWELDNMEDAVRLLNKHIWNKSII 66

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
            I  D DVDG  S ++M ++L        + +       +G +    E  +     L+I 
Sbjct: 67  SILVDCDVDGFTSASMMFQYLKTIGYFGKINVLHHSGKEHGLSK---EIEVPPETTLLII 123

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
            D GS   +  +   + GID++++DHH    E   A  + N N          L  AGVV
Sbjct: 124 PDAGSNDVEQCKELRDNGIDILILDHHICDRENPYAVIVNNQNG---TYPNKELSGAGVV 180

Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQ 274
           +  L  +       ++          LDLVA+  + DV+ +     +    KGL    R 
Sbjct: 181 YKFLQAV-------DEYNWTDVADRYLDLVAVGNIGDVMDMHSHETKRLCTKGL---ARI 230

Query: 275 GNPGLKALIER--VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE---- 328
            NP + AL+E    NI    T  ++ + I P +NA  R+G S    R+  +   +E    
Sbjct: 231 VNPMICALVEANSFNIKGDPTINDVQFYIVPMMNALIRVGSSEQKKRMFRAMVGEEQTFQ 290

Query: 329 -----------------LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                             + +A +        +  ++     AE +         ++ V+
Sbjct: 291 YTPTRGKNAGVTIDETLAQHVARECSSCK--YQQNKTKDKAVAELQNWISKYGADRSKVL 348

Query: 372 VVEGDRW-HPGIVGLLAARLKEKFGRPSFAISFE--------EDGKGIGSGRSIEGFDIG 422
                      + G++A +L E +G+P   +                 GS R+ +G  I 
Sbjct: 349 FCNSTGILDSNLTGVVAIKLAEMYGKPCVLLREMACPEEPDENQEYFGGSMRNPDGSPIE 408

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            +  F +  G      GH  AAG+ +++ N  +           ++  +  +    +D  
Sbjct: 409 SLKEFLMSTGDFESVLGHDNAAGVKIKKKNVPKAIADCN----ELLKDVTMSKAIVVDFD 464

Query: 483 LNASAVNIALIDMLESAG-PYGAGNPNPVFAFPNHKLQS--IRVVNLAHLQMTFESQDSE 539
            + S + +AL   +      +  G   P F   N  L       +        +  ++ +
Sbjct: 465 FDYSKLTVALPKTMYEMHKIWAQGISEPYFYIKNIPLIHSGCAPMGKNGNMWKYSDEE-K 523

Query: 540 TLQAIAF----RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +  + F    R+ G    +F      K ++    L +N +      Q +++D   +
Sbjct: 524 GIDFVCFADNGRMIGWINNDFYGDQEEKYINAVCRLSLNQYGNKVTPQAQIVDFEVI 580


>gi|307069647|ref|YP_003878124.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Zinderia
           insecticola CARI]
 gi|306482907|gb|ADM89778.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Zinderia
           insecticola CARI]
          Length = 561

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/560 (23%), Positives = 247/560 (44%), Gaps = 26/560 (4%)

Query: 42  IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
           I + +  +R VS     ++   + + L+    +L + +KA + I++ I+N +KI I  DY
Sbjct: 24  IFSNIYSSRKVSSISKINY---NFKNLIKTKNLL-NIEKATKVIIKYIFNKKKICIIPDY 79

Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
           D DG  S  L ++ L     N   +IP+R   GYG +  ++ K + +  +LIITVD G +
Sbjct: 80  DCDGITSCVLAIKILKKLGANVYYFIPNRFKYGYGLSIKII-KKLKKNTKLIITVDNGIS 138

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
           S+  ++YA  + I +I+ DHH    +      +VNPN   + S   +L   GV F +L+ 
Sbjct: 139 SFKGIKYANKKNIKIIITDHHLPNKKIPNNCIIVNPNFKKNNSKIKNLSGVGVTFYLLLH 198

Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281
           +   L++         + + LD+VA+ T+ D+V L   NR  +  G+     +    LK 
Sbjct: 199 LNNKLKKKFLNFKKIKIKNFLDIVAIGTLADIVKLDYNNRILIYNGIR--NIKNLGILKL 256

Query: 282 LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
           L         I   ++ + I P IN+ GRI +  L  + L++++ ++L  +   +  +N 
Sbjct: 257 LKFLNKNKKNINCNDIIFYISPLINSTGRIKDPYLSIKFLLTNNKKKLNNIIKSIIKINN 316

Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP-SFA 400
            R+  E ++L            +I +   +++   ++H GI+G++++++KEKF  P    
Sbjct: 317 TRKKKEKSILFI--INNYINKININRYYSLIIYNKKFHEGIIGIISSKIKEKFNLPTIIF 374

Query: 401 ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCD 458
              ++     GSGRSI+  +I  ++    +     + K GGH+MA GLT+ +        
Sbjct: 375 TKTKKKKFIKGSGRSIKNINIKNILEKINKSNSKIIKKFGGHSMAIGLTIFKNKLNLFKK 434

Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518
            F  +        I   + KID  LN    N   I +L     +G     P+F      +
Sbjct: 435 KFNNYIKKKNNKYINKKILKIDCYLNVKYFNKKFIILLNK-QIWGNNFSEPIFY-NFFNI 492

Query: 519 QSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT-GHLCVNYWR 577
              +++N  H  +  + ++          +Y +               +    + +N + 
Sbjct: 493 IKQKIINKKHNFLLLKLKN---------NIYNSIWFNNNKIINFNNKILVFFKIYLNNFN 543

Query: 578 GSKRCQLRVLDASPVEGHHF 597
                QL +     +   +F
Sbjct: 544 NK--IQLILQYIKEINYENF 561


>gi|76799804|ref|ZP_00781871.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus
           agalactiae 18RS21]
 gi|76584843|gb|EAO61534.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus
           agalactiae 18RS21]
          Length = 452

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 16/302 (5%)

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           I P +NA GR+ + N    LL   D +E + +A  +D  N+ R+ +   + +QA   +  
Sbjct: 1   IAPQLNALGRLDDPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML-- 58

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                Q   V V+  + WHPG++G++A R+ E+ G+P   ++  EDG   GS RS+E  D
Sbjct: 59  ----DQTKPVQVLAKENWHPGVLGIVAGRILERTGQPVIVLNI-EDGIAKGSARSVEALD 113

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           I    +F     + +  GGH+ AAG+T+E    G L      +       +       ID
Sbjct: 114 I--FQAFDQHRELFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTID 171

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDS 538
             L    +++  +   E   P+G  N  PVF   + K+   RV+     HL++  E QD 
Sbjct: 172 SELRFDELSLDTVRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDG 230

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
           + L  +AF + G+ L EF    + + + +   L VN W G+   QL + DA       F 
Sbjct: 231 QALDLVAFNM-GSQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFD 286

Query: 599 KK 600
            +
Sbjct: 287 IR 288


>gi|319645718|ref|ZP_07999948.1| YorK protein [Bacillus sp. BT1B_CT2]
 gi|317391468|gb|EFV72265.1| YorK protein [Bacillus sp. BT1B_CT2]
          Length = 572

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/579 (19%), Positives = 222/579 (38%), Gaps = 50/579 (8%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
                  +  +L NR +  +  + FL+ S    +     L + D+AA  +++ +    +I
Sbjct: 10  DFCFSP-LKTILKNRGI--EDIEGFLSLS-EDAVNHYSNLINIDEAAECLIKHLRKKARI 65

Query: 96  MIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
            I  D DVDG  S ++++ ++       N       R+ +  G    ++ + I EG  L+
Sbjct: 66  FIQVDSDVDGVTSSSIIINYIKRVFPEANIEW----RMHE--GKQHGIILETIPEGVDLV 119

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           I  D GS  ++       +GIDVIVIDHH+   E     A+V  N+L        L  AG
Sbjct: 120 IIPDAGSNQFEEHLVLRQKGIDVIVIDHHECDKESQN--AIVVNNQLSPKYKNKALTGAG 177

Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVAR 272
           + + +   +   L ++            +DLV++  + D         R Y+ +GL   R
Sbjct: 178 MAYKLCQALDDKLGKNEA-------KRFIDLVSVGNIADSADSREPETRYYMNQGLKKVR 230

Query: 273 RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS--------- 323
                    + +  +       +N  + I P INA  RIG  +   +++ S         
Sbjct: 231 N-PLIKELFIKQAYSTKGKKNIQNTQFYINPLINAAIRIGSQDEKDQMMRSLLESNEEIY 289

Query: 324 ---------DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                    +        A  L  + Q ++ M  + + + E ++  +   ++   +IV  
Sbjct: 290 YKKRGKDEGELVSIHWDTARVLGNIKQRQKKMVDSAVLEIEKRIEEKGL-LKNKILIVYI 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434
               +  + GL+A +L  ++ RP       ED    GSGR  +   +        E G  
Sbjct: 349 EGILNKNLTGLVANQLAAEYKRPVLLARELEDRTLGGSGRGYDKGAVKNFKQLLEETGKF 408

Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494
               GHA A G ++   N  ++ D       +IV   I    +++D  + A  +    I 
Sbjct: 409 EFVEGHAEAFGFSITPENLIQVNDILNHKLKDIV---INQNEYEVDFEIAADNLTERFIK 465

Query: 495 MLESAGP-YGAGNPNPVFAFPNHKLQSIRV--VNLAHLQMTFESQDSETLQAIAFRVYGT 551
           ++ S    +G     P+ A  + ++    +  +     + T + +    ++ + F+    
Sbjct: 466 LINSYQDYWGYKVEEPLLAITDIEINKEDISHIGKK-TKNTVKFKVGG-IEYMKFKSDEE 523

Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                + +     + V G   VN ++G +  Q+ + +  
Sbjct: 524 FYESLINRGDRLVLTVIGRAKVNEYKGKETPQIEIEEME 562


>gi|302668999|ref|YP_003832824.1| ssDNA exonuclease RecJ2 [Butyrivibrio proteoclasticus B316]
 gi|302397339|gb|ADL36242.1| ssDNA exonuclease RecJ2 [Butyrivibrio proteoclasticus B316]
          Length = 543

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 134/537 (24%), Positives = 229/537 (42%), Gaps = 58/537 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            +KAA  I + I     I +F DYDVDG  +  +M++ L        +Y P R VDGYG 
Sbjct: 38  LEKAAEMIKRHIAAQLPIAVFTDYDVDGLGAALIMIQLLQALGAQYYVYAPRRSVDGYGI 97

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-----IPAY 192
             + + K ++    L+ITVD G  + + +  A   G +V+++DHH     +       A 
Sbjct: 98  TNNFVSK-LSGYRGLLITVDNGIAAIEQVNRAKALGWEVLIMDHHHALENDGIPEIPRAD 156

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
            +++P          H C AG+ F +             +   + +  L    A++TV D
Sbjct: 157 LIIDPEVFGTGCDFTHYCGAGLAFKLAQF---------MLDDQYLIDKLNTFAAISTVAD 207

Query: 253 VVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
           VVPLI  NR  V +GL +  R  G  GL+ L+E + I    TA++LG+ IGP +NA  R+
Sbjct: 208 VVPLIEDNRQIVKRGLELMNRGVGTVGLQKLLEYLQIRGFATAKDLGFSIGPMMNAATRM 267

Query: 312 GES-------NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
                     +     L+ +D       +M+L  +N+ R+ + +A LE  +  +L     
Sbjct: 268 EAMYEGWNGSDFVINALLCEDEMLASQYSMQLSEINKQRKEITAAALETVKCDILD---- 323

Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424
                 +         G+ G++A R+ E+  +P+F    EE+G   GS RS +       
Sbjct: 324 -----SVNFIKVDAPAGLCGIIAPRVMEQNPKPTFVF-MEENGVCTGSARSDDETQNNVK 377

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
                   +L+K GGH  AAG + +  N   +     ++   +V   +       D  LN
Sbjct: 378 EMLETCRDLLIKYGGHPGAAGFSFKIENMDEIHKRLSEYP--VVSNALKQ---VYDLELN 432

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFP---NHKLQSIRV------VNLA--HLQMTF 533
              + ++ +  L+   P+G G   P+F      N + Q+  +      +     HL++  
Sbjct: 433 KEDI-VSTLCELDRIEPFGKGLEAPIFRVACRFNDRDQNGNITEYWHGMGKDGSHLRLDL 491

Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
             Q    L+A+AF +      +F      K++++ G    N + G +  Q R     
Sbjct: 492 TPQ----LKAVAFNMK----PQFDEMGHPKQLYLIGRPGWNIYDGKRIAQFRCEAIE 540


>gi|242310450|ref|ZP_04809605.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter
           pullorum MIT 98-5489]
 gi|239522848|gb|EEQ62714.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter
           pullorum MIT 98-5489]
          Length = 441

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 213/454 (46%), Gaps = 29/454 (6%)

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
            ++ IP R  DGYG + +++++      ++IITVD G ++ +A +    +GI++I+ DHH
Sbjct: 2   ISIVIPSRFDDGYGLSSAMIDRL---DCEMIITVDNGISAIEAAEVCKQRGIELIITDHH 58

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242
               E +P   + NP        +  +C A V + +   I + +  +        +   L
Sbjct: 59  -TPQENLPDALICNPKLSP-HFPESEICGACVAWYLCAAIKQEMGIE------VQMAEFL 110

Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302
           DL+ALA + DV+PL G+NR  + KGL V  +     L  L E      P+ ++ LGY   
Sbjct: 111 DLLALAIISDVMPLRGMNRVLLKKGLEVLAQSKRAALVILKEHFK-RYPLNSQLLGYYFV 169

Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
           P +N  GR+ E+ +    LI  D  +   +  KL  LNQ R+ +++    +A+    TQ 
Sbjct: 170 PLLNCAGRMEEAKIAYEFLIEKDYCKALEIFKKLQKLNQKRKNLQNKTFLEAKEYFETQ- 228

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422
           +  ++   ++V  ++W+ G+VG++AA+L E++ RPS  ++ +E+    GS RS    DI 
Sbjct: 229 EKFEELPFVLVCNEQWNEGVVGIVAAKLCEEYARPSIVLTHKEE-YLKGSMRS---LDID 284

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
            M      +G L   GGH  AAGL++      +  DF        +P         I G 
Sbjct: 285 CMKILEQCQGYLEAFGGHFGAAGLSL---QKEKFLDFRDYLMQLKLPDKQKIIQSNILGS 341

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542
           L    VN+ +  +L+   PYG  N  P F     K++++++    H QM  E Q+    +
Sbjct: 342 LPLKEVNLEIFRILQEFEPYGEQNSIPQFVTQ-AKIRAVQIFGTNHSQMVLE-QEGVIRK 399

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
           A+ F        E L     + M     L  + +
Sbjct: 400 ALVFF-------ENLKAYENQEMGFAYSLQWDKF 426


>gi|9630257|ref|NP_046684.1| putative ss-DNA-specific endonuclease [Bacillus phage SPBc2]
 gi|16079094|ref|NP_389917.1| single-strand DNA-specific exonuclease; phage SPbeta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309941|ref|ZP_03591788.1| hypothetical protein Bsubs1_11241 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314263|ref|ZP_03596068.1| hypothetical protein BsubsN3_11162 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319185|ref|ZP_03600479.1| hypothetical protein BsubsJ_11088 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323461|ref|ZP_03604755.1| hypothetical protein BsubsS_11217 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|75077815|sp|O64145|YORK_BPSPC RecName: Full=Putative single-strand DNA-specific exonuclease yorK
 gi|81342019|sp|O31903|YORK_BACSU RecName: Full=Putative SPBc2 prophage-derived single-strand
           DNA-specific exonuclease yorK
 gi|2634428|emb|CAB13927.1| putative single-strand DNA-specific exonuclease; phage SPbeta
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025610|gb|AAC13105.1| putative ss-DNA-specific endonuclease [Bacillus phage SPbeta]
          Length = 576

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 111/585 (18%), Positives = 225/585 (38%), Gaps = 55/585 (9%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
            +     +A +L NR +  +  K F+N     ++     L + DKAA  +++ + N  K+
Sbjct: 10  DYNFDP-LATILKNRGI--EDPKLFVNVDQSSVIHY-SKLNNIDKAADCLIRHLNNKNKL 65

Query: 96  MIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
            +  D DVDG  S ++++ ++       N +  I D      G    +    I +   L+
Sbjct: 66  FVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQD------GKEHGIFIDTIPDDVDLV 119

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           I  D GS+ ++  +    +G ++IVIDHH+ +       A+V  N+L        L  AG
Sbjct: 120 IIPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEH--AIVVNNQLSPNYSNKTLTGAG 177

Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVAR 272
           + +     I   L ++            LDLV++  + D         R ++ +GL    
Sbjct: 178 MAYKFCQAIDEKLNKNEA-------EQFLDLVSIGNIADSADSRNLETRYFMNEGLKKI- 229

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLI-------- 322
              +P LK L ++         + +N  + I P INA  R+G S    +++         
Sbjct: 230 --KHPLLKKLFKKQEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEK 287

Query: 323 -------SDDSQELEMLAMKLDVLNQNR-RLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
                    +++ + +    + +L   + +          E K   +   +    V++V 
Sbjct: 288 VPYKKRGQSETELVSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVY 347

Query: 375 GDRW-HPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFD--IGKMVSFAVE 430
            +      + GL+A +L E++ +P     +  E GK I SG         I       ++
Sbjct: 348 IEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELID 407

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+     GH  AAG  ++R N   +     +   +I           +D  + A  +  
Sbjct: 408 TGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDINIEEDIQN---VDFEIPAKRLRK 464

Query: 491 ALIDMLESAGP-YGAGNPNPVFAFPNHKLQSIRV--VNLAHLQMTFESQDSETLQAIAFR 547
             I  L+     +G     P+ A  + +++  ++  +     + T + +  + ++ I F+
Sbjct: 465 EFILQLDGYKDYWGYKVEEPLIAITDLEIEVEQIEHLGKK-NKTTVKFKHGD-IEYIRFK 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +    +    ++V G    N ++G K  Q+ + +   V
Sbjct: 523 SDENYFNQLTASNGTLVINVIGKAKANEYKGKKTPQIEIYELEVV 567


>gi|158834139|gb|ABW81874.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834141|gb|ABW81875.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834149|gb|ABW81879.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A+   +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E        +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280


>gi|20808502|ref|NP_623673.1| single-stranded DNA-specific exonuclease [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517123|gb|AAM25277.1| Single-stranded DNA-specific exonuclease [Thermoanaerobacter
           tengcongensis MB4]
          Length = 491

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 204/439 (46%), Gaps = 32/439 (7%)

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           IV+ I+ S+ I IFGDYDVDG +S  ++   L    +   +++P+R  +GYG  P  +++
Sbjct: 29  IVKTIFESKSIAIFGDYDVDGISSSLILKNALDVLGIQNKIFLPER-EEGYGIKPEHVQQ 87

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              EG   +ITVD G T+++A + A   GI +I+ DHH+  +    AY + NP    D  
Sbjct: 88  IKAEGFDAVITVDNGITAFEAAKAAREAGIKLIITDHHEPLAHLPDAYKIFNPKLYKDKY 147

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
                  AGV +L+      +LRQ N       +     L  LATV DVVPL G N    
Sbjct: 148 Q--DYAGAGVAYLIA---RELLRQRNFSVTPAMI----QLAGLATVADVVPLDGNNWYIA 198

Query: 265 VKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            KGL + R+Q   G+K ++     +   +T  ++G++I P INA GR+    +G  LL+ 
Sbjct: 199 RKGLELMRKQPIKGIKEILRTAGRNHENLTGFDIGWIIAPRINATGRLKSPKMGLELLLY 258

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
                    A +++ LN+ R  + +  L + E           +   ++        GI 
Sbjct: 259 GT------NAEEVEQLNRKRLELVNQYLSRIE---------DSENKFLIYAFKNCPRGIT 303

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
           GL+A R  EKF +P    S +  GK + S R+   FD+ +   +  E   +   GGH  A
Sbjct: 304 GLIAGRAAEKFQKPVMVSSIDSSGKAVSSARTYGDFDLMEAFKYVSEHVDI-TFGGHKSA 362

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
           AG++    +  R+ +   K+     P      +  +DGVL     ++  +   +S  P+G
Sbjct: 363 AGVSYSIRDLKRIQNLLNKYTEENPPKE---EIRDLDGVLT-KVPDLEEVMAFDSFEPFG 418

Query: 504 AGNPNPVFAFPNHKLQSIR 522
             NP P F      +  +R
Sbjct: 419 YKNPEPAFLLEG-TVTDVR 436


>gi|158834121|gb|ABW81865.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 146/274 (53%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A+   +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTGR 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCSFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E     +  +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSAHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   ++G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSIGVSLLLTQDLSEARELAKD 280


>gi|158834129|gb|ABW81869.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834131|gb|ABW81870.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834133|gb|ABW81871.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834135|gb|ABW81872.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A+   +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRARLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E        +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280


>gi|158834113|gb|ABW81861.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834115|gb|ABW81862.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834117|gb|ABW81863.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834119|gb|ABW81864.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834123|gb|ABW81866.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/274 (34%), Positives = 143/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A+   +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTGR 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E        +T  +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTVADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280


>gi|158834137|gb|ABW81873.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A+   +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRVHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E        +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280


>gi|158834153|gb|ABW81881.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A    +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEDAIQILKEAFSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R +   PG+ AL+E        +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRARKSRPGIVALLEVASRSEHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280


>gi|328912209|gb|AEB63805.1| Putative SPBc2 prophage-derived single-strand DNA-specific
           exonuclease yorK [Bacillus amyloliquefaciens LL3]
          Length = 576

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/585 (19%), Positives = 230/585 (39%), Gaps = 55/585 (9%)

Query: 36  KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95
            +     ++ +L+NR +  +  K F++ +   ++     L + DKA+  +++ + N  KI
Sbjct: 10  DYNFNP-LSTILINRGI--ENPKSFIDVNQSSVIH-FSKLDNIDKASDCLIKHLENKNKI 65

Query: 96  MIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
            +  D DVDG  S ++++ ++       N +  I D      G    +    I +   L+
Sbjct: 66  FVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQD------GKEHGIFIDTIPDDVDLV 119

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           I  D GS+ ++  +    +G ++IVIDHH+ + E     A+V  N+L        L  AG
Sbjct: 120 IIPDAGSSQFEEHEALNKRGTEIIVIDHHECERESEH--AIVVNNQLSPNYSNKTLTGAG 177

Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVAR 272
           + +     +   L ++            LDLV++  + D         R ++ +GL    
Sbjct: 178 MAYKFCQAVDEKLNKNEA-------EQFLDLVSIGNIADSADSRNLETRYFMNEGLKKI- 229

Query: 273 RQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIGESNLGSRLLI-----SDD 325
              +P LK L ++ + S+      +N  + I P INA  R+G S    +++       + 
Sbjct: 230 --KHPLLKKLFKKQDFSTRGDKNIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEK 287

Query: 326 SQELEMLAMKLDVLNQN----R-------RLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
               +    + ++++ +    R       +    A     E K   +   +    V+++ 
Sbjct: 288 VPYKKRGQSETELVSIHDDTVRILGNLKAKQKRIADAAGVEIKNRIEEKSLTANKVLIIY 347

Query: 375 GDRW-HPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFD--IGKMVSFAVE 430
            +      + GL+A +L E++ +P     +  E GK I SG         I       ++
Sbjct: 348 IEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKVLID 407

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G+     GH  AAG  ++R N   +     +   +I           +D  + A+ +  
Sbjct: 408 TGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDIDIEEYVQN---VDFEIPANQLRK 464

Query: 491 ALIDMLESAGP-YGAGNPNPVFAFPNHK--LQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
             +  L S    +G     P+ A    +  +  I  +     + T + +  + ++ I F+
Sbjct: 465 EFLIKLYSYKDYWGYKVEEPLVAITELEVDVDQIEHIGKK-NKTTVKFKHGD-IEYIRFK 522

Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                  +    +    ++V G   VN ++G +  Q+ + D   V
Sbjct: 523 SDTEYFEKLTQSNGTLILNVVGKARVNEYKGRQTPQIEIYDLEVV 567


>gi|291529778|emb|CBK95364.1| Single-stranded DNA-specific exonuclease [Eubacterium rectale
           M104/1]
          Length = 594

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/567 (20%), Positives = 206/567 (36%), Gaps = 57/567 (10%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDR 130
             + +  +       A+     ++   DYD DG     +     S   +     + +P R
Sbjct: 37  YHINNMQEVMALFTDAVIKRYMMIFHTDYDGDGINCANIARNLASVLGITDLVKVVVPRR 96

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
             DGYG     +E +   G +L+I  D G  + + ++ A   G+ VI++DHH+    +  
Sbjct: 97  FSDGYGVQVRHVEAYAEWGCKLLILADNGIAAIEPVKRAKELGMKVIILDHHEKFVNDQK 156

Query: 191 AYALVNPNRLDDLS----GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
              L + + L D           C AG++++    I       +               A
Sbjct: 157 EVVLPDADVLCDPHVTGADFVDYCGAGLMYIFANSIVSTCPWLSDGAKEKFHAVTSVYAA 216

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVA-RRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
           + TV DVVPL G NR  V  G+  A   + + G+  L++  N+   ITA  + + + P  
Sbjct: 217 IGTVADVVPLTGENRRIVKAGIKNALAGRASTGMMELLKDANMLDRITAPQMAFFLCPMF 276

Query: 306 NAGGRIGESNLGS----RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
           NA  R+ +            +    + +E     +   N+ R+ +      +A   +   
Sbjct: 277 NAYERLDDGGSAEVSDATSYMGVHDESIENDCQIIKNKNEERKKLAEEAFARAVDYINAN 336

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFD 420
             ++Q    IV   +    GI GL A ++ EK+ RPS  +S   +D    GSGRS    +
Sbjct: 337 --NLQNERFIVFVDEDGSAGINGLTAGKITEKYRRPSIVVSPTIDDNILKGSGRSRYWAN 394

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
           + K+         + K GGH  A G+T+ R                  PA   + +   D
Sbjct: 395 LKKI--LDQSNEFIEKYGGHPGACGITLTRDKINDFIKAVNDLTPEA-PAEEQSDIILYD 451

Query: 481 GVLNASAVNI-ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV-----------VN--L 526
                  VN+  + +  E   P+G GNP  VF   +  +   +            +    
Sbjct: 452 KECRV--VNLRKMFEETEKYQPFGEGNPEIVFRIDDIDIVGKKRYRAEGVDYYQFMGANK 509

Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW---------R 577
            H+++      +   Q I F        E+       ++ V G L  N +         +
Sbjct: 510 QHVKLF-----ANGFQLIWFGGAE----EYKKMGCPLKVSVLGTLNENIYVPDREAIPRK 560

Query: 578 GSKRCQLRVLDASPV------EGHHFA 598
             +  Q+++ D  P       E  +  
Sbjct: 561 EYRTLQVQITDLKPADASDKSEWQNIP 587


>gi|158834151|gb|ABW81880.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 145/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A+   +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTGR 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLILGLRAHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E     +  +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSAHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELARD 280


>gi|158834111|gb|ABW81860.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834125|gb|ABW81867.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834127|gb|ABW81868.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834143|gb|ABW81876.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834145|gb|ABW81877.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834147|gb|ABW81878.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
 gi|158834155|gb|ABW81882.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa]
          Length = 280

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 143/274 (52%), Gaps = 7/274 (2%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127
           + D   L   + A + + +A    +++MI GD+DVDGA S AL M  L      N +  I
Sbjct: 7   LCDWQALAGIEDAIQILKEAFSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P+R  +GYG  P ++E+    GA LIITVD G +S++ +  A ++G+ V++ DHH     
Sbjct: 67  PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243
              A A++NPN+L+       L   GV F +++ +   LR++           +L   LD
Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186

Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301
           LVAL TV DVVPL   NR  V +GL   R     PG+ AL+E        +TA +LG+ +
Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246

Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335
            P +NA GR+   + G  LL++ D  E   LA  
Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELARD 280


>gi|325475092|gb|EGC78278.1| single-stranded-DNA-specific exonuclease RecJ [Treponema denticola
           F0402]
          Length = 705

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W     + G      I +K+    + + +LV R +        +L   +R L   P +  
Sbjct: 3   WQ--KKEIGPELVNEIKRKYGCDPLTSAILVRRGIIEGKDILFYLEDDMRYLH-SPFLFK 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + + A  RI+ A    EK++IFGD DVDG  S  L+   L    ++ +  IP    + YG
Sbjct: 60  NMEDAVDRILDAKEEGEKVLIFGDRDVDGITSTTLLYEALKDMGLDVSWRIPT-GDESYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +   +EK       LIITVDCG +++  ++ A + GIDVIV+DHH  +     A  ++N
Sbjct: 119 LSVEAVEKHAANDGTLIITVDCGISNFKEIEKANSLGIDVIVVDHHTPQENLPEAAVIIN 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223
               D      +L      + ++  + 
Sbjct: 179 CKMPDSGYPHENLSGCATAWKLITALR 205



 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 158/354 (44%), Gaps = 12/354 (3%)

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYM 300
           + LVAL+T+ D++ L G NR  V +GL    ++   GL  L+    +  +PI  E + + 
Sbjct: 358 IQLVALSTLADLMELTGENRIIVKQGLKEINKKPRLGLVDLMAMQKLLGAPIGTEEIAWN 417

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           I P +NA GR+G       L ++ DS E    A ++  +N++RR + S   E A    + 
Sbjct: 418 ISPLVNASGRMGRPETAIELFLAQDSGERTAKAQEIFQMNEDRRALGSKAWEIALPLAIE 477

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
              +  +  V+ V  + +H GI G+LA +L E F  P+ AI    DG  + S RS  GF 
Sbjct: 478 SLKEYNEKLVVAVSAE-FHRGITGILAGKLAEYFKLPALAICLMPDGSAVASIRSARGFR 536

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479
           +   +       + +  GGH  AAG  +++    +  +  ++F+ ++       +    I
Sbjct: 537 LLDFLE--PYSELFLDYGGHDFAAGFGIKQEKLTKFLESLKQFSGSMEFENDADSETLTI 594

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536
           D  L    +   ++++++   PYG  +P   F     K+ +  ++  A   HL+   E  
Sbjct: 595 DAELPHDYLKPEILNLVDKFEPYGCNSPALTFMTKRVKILNANIIGKAEPLHLRFNLEC- 653

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
                 A+ ++       EF     G    +  ++  NY+ G+   ++ + D  
Sbjct: 654 GKYKWNALYWKAAEKLGTEF---KVGDYADIVFNVSKNYFNGTVTPKMVIKDLK 704


>gi|42527693|ref|NP_972791.1| single-stranded-DNA-specific exonuclease RecJ [Treponema denticola
           ATCC 35405]
 gi|41818521|gb|AAS12710.1| single-stranded-DNA-specific exonuclease RecJ [Treponema denticola
           ATCC 35405]
          Length = 710

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W     + G      I +K+    + + +LV R +        +L   +R L   P +  
Sbjct: 3   WQ--KKEIGPELVNEIKRKYGCDPLTSAILVRRGIIEGKDILFYLEDDMRYLH-SPFLFK 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + + A  RI+ A    EK++IFGD DVDG  S  L+   L    ++ +  IP    + YG
Sbjct: 60  NMEDAVDRILDAKEEGEKVLIFGDRDVDGITSTTLLYEALKDMGLDVSWRIPT-GDESYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +   +EK       LIITVDCG +++  ++ A + GIDVIV+DHH  +     A  ++N
Sbjct: 119 LSMEAVEKHAANDGTLIITVDCGISNFKEIEKANSLGIDVIVVDHHTPQENLPEAAVIIN 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223
               D      +L      + ++  + 
Sbjct: 179 CKMPDSGYPHENLSGCATAWKLITALR 205



 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 12/357 (3%)

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYM 300
           + LVAL+T+ D++ L G NR  V +GL    ++   GL  L+    +  +PI  E + + 
Sbjct: 358 IQLVALSTLADLMELTGENRIIVKQGLKEINKKPRLGLVDLMAMQKLLGAPIGTEEIAWN 417

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           I P +NA GR+G       L ++ DS E    A ++  +N++RR + S   E A    + 
Sbjct: 418 ISPLVNASGRMGRPETAIELFLAQDSGERTAKAQEIFQMNEDRRALGSKAWEIALPLAIE 477

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
              +  +  V+ V  + +H GI G+LA +L E F  P+ AI    DG  + S RS  GF 
Sbjct: 478 SLKEYNEKLVVAVSAE-FHRGITGILAGKLAEYFKLPALAICLMPDGSAVASIRSARGFR 536

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479
           +   +       + +  GGH  AAG  +E+    +  +  ++F+ ++       +    I
Sbjct: 537 LLDFLE--PYSELFLDYGGHDFAAGFGIEQEKLTKFLESLKQFSGSMEFENDADSETLTI 594

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536
           D  L    +   ++ +++   PYG  +P   F     K+ +  ++  A   HL+   E  
Sbjct: 595 DAELPHDYLKPEILHLVDKFEPYGCNSPALTFMTKRVKILNANIIGKAEPLHLRFNLEC- 653

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
                 A+ ++       EF     G    +  ++  NY+ G+   ++ + D   ++
Sbjct: 654 GKYKWNALYWKAAEKLGTEF---KVGDYADIVFNVSKNYFNGTVTPKMVIKDLKKID 707


>gi|213583109|ref|ZP_03364935.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 271

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIV 132
            L+  D A   +  A     +I++ GD+D DGA S AL +  +     +  +  +P+R  
Sbjct: 9   QLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFE 68

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           DGYG +P ++++    GAQLI+TVD G +S+  + +A    I VIV DHH        A 
Sbjct: 69  DGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAE 128

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALA 248
           A++NPN  D       L   GV F +++ +   LR             +L  LLDLVAL 
Sbjct: 129 AIINPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALG 188

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306
           TV DVVPL   NR    +GL   R  +  PG+KAL+E  N     + A +LG+ +GP +N
Sbjct: 189 TVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLN 248

Query: 307 AGGRIGESNLGSRLLISDDSQEL 329
           A GR+ + ++G  LL+ D+  E 
Sbjct: 249 AAGRLDDMSVGVALLLCDNLGEA 271


>gi|313618803|gb|EFR90697.1| single-stranded-DNA-specific exonuclease RecJ [Listeria innocua FSL
           S4-378]
          Length = 518

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 14/311 (4%)

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            E +G+ + P +NA GR+G ++  + LL+++D +E   LA ++D  N+ R+ +   + + 
Sbjct: 7   EETIGFGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQVVVDVTKL 66

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGS 412
           A A +  +       ++IVV G+ W+ GI+G++A++L   + RP+  +  +   G   GS
Sbjct: 67  AMAAIEAK---ESLGNIIVVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDPVTGIAKGS 123

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
           GRS+E F + +         ++   GGH MAAGLT+   N   L +  Q+ A   +    
Sbjct: 124 GRSVEAFHLYQA--LDKHRSLMTAFGGHPMAAGLTLPAENLAELDNKLQEEAS-HLSDED 180

Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQ 530
             P  KI+  +N + ++++ I  LE   P+G  NP P+F      L+  + +     HL+
Sbjct: 181 FRPALKIEEKINLADISVSFIAQLEKLAPFGMDNPKPIFLLEEMNLKGTKRIGADKTHLK 240

Query: 531 MTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               ++DS+ TL AI F V           S    + V G L +N W   K+ QLR++D 
Sbjct: 241 TMLANEDSDVTLDAIGFGVGDL----VEKISPHAAVDVVGELSINEWNNIKKPQLRMMDI 296

Query: 590 SPVEGHHFAKK 600
                  F  +
Sbjct: 297 HIPHWQLFDVR 307


>gi|269941584|emb|CBI49989.1| phage putative phosphoesterase [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 588

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 231/592 (39%), Gaps = 51/592 (8%)

Query: 32  AITQKH--AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89
            +  ++   +  +   +L NR +  +  + +++P+   L PD   L D ++  + +   I
Sbjct: 4   KLKGEYTPNLDPLE-YILSNRGIKEEDYEKYISPT-EELQPDWKKLEDIEEGVKSLKSKI 61

Query: 90  YN-SEKIMIFGDYDVDGAASVALMMRFLS---HCSVNANMYIPDRIVDGYGPNPSLMEKF 145
            + + KI I  D D DG AS ++M +FL+          + IP  +   +G N   + + 
Sbjct: 62  DDDNAKIGILIDADQDGLASGSIMYKFLTKQLQFDKERIIVIPP-LNKSHGINIERVLEH 120

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 ++IT D  S+ ++  +   N+GI+ +VIDHH     +     ++N    D+   
Sbjct: 121 GMTSGDILITPDSASSDFEQHEELYNKGINTLVIDHHLAPKNKDSKAIIINNQLSDE-FE 179

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL--NRAY 263
              L  + + +L  V    +L  D  V       +L DL A+  V D             
Sbjct: 180 NKALTGSAMTYLFCVAYCELLGTDLTV-------NLKDLAAIGLVADRANFAHDLGAYYM 232

Query: 264 VVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           +  GL             + +  N+     + A+++G+ + P+INA  R+G  +  ++++
Sbjct: 233 MRDGLRKENIDSLMLKMIINKSSNLEQGVDLNAKDIGFNVAPTINAVFRMGTQDELTQVI 292

Query: 322 ISDDSQEL--------------EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
                 +               E   ++   + + ++  E+ +L++ + ++  +  D  +
Sbjct: 293 HGMCEFDYTIHNKRKKMDLHISEEAYLRAMAVKRRQKKQENEVLDKIKERIKEKGSDKHK 352

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             ++   G   + G+ GL+A +L  ++GRP   +    +    GSGR+I    I  +   
Sbjct: 353 ILIVNSTGIVENNGLNGLIAMKLAREYGRPVLMVKRIGE-YFKGSGRNINNSPIPDLNKM 411

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             + G L    GHA A G+     +   +    +     ++   ++   ++ D     + 
Sbjct: 412 LTDTG-LFTCKGHANAFGVEFHVSDALEVLKAIE---SELIDVNLSDIEYEADFQWT-NN 466

Query: 488 VNIALIDML---ESAGPYGAGNPNPVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQ 542
           ++  +I  L   +    +  G   P+    N  +  ++I+++      +         + 
Sbjct: 467 LDSNIIHTLANNKDM--WCNGIDEPLIRLKNILVRKENIKLIGKTGNTLKINVNG---ID 521

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            + F +      E +         +     VN +RG    QL + + S  + 
Sbjct: 522 CVKFFLKEEQKNEIVTAPDIMYFDLICTASVNSFRGMNTPQLMIEEYSISDA 573


>gi|313623675|gb|EFR93829.1| single-stranded-DNA-specific exonuclease RecJ [Listeria innocua FSL
           J1-023]
          Length = 520

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 14/311 (4%)

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            E +G+ + P +NA GR+G ++  + LL+++D +E   LA ++D  N+ R+ +   + + 
Sbjct: 9   EETIGFGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQVVVDVTKL 68

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGS 412
           A A +  +       ++IVV G+ W+ GI+G++A++L   + RP+  +  +   G   GS
Sbjct: 69  AMAAIEAK---ESLGNIIVVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDPVTGIAKGS 125

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
           GRS+E F + +         ++   GGH MAAGLT+   N   L +  Q+ A   +    
Sbjct: 126 GRSVEAFHLYQA--LDKHRSLMTAFGGHPMAAGLTLPAENLAELDNKLQEEAS-HLSDED 182

Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQ 530
             P  KI+  +N + ++++ I  LE   P+G  NP P+F      L+  + +     HL+
Sbjct: 183 FRPALKIEEKINLADISVSFIAQLEKLAPFGMDNPKPIFLLEEMNLKGTKRIGADKTHLK 242

Query: 531 MTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
               ++DS+ TL AI F V           S    + V G L +N W   K+ QLR++D 
Sbjct: 243 TMLANEDSDVTLDAIGFGVGDL----VEKISPHAAVDVVGELSINEWNNIKKPQLRMMDI 298

Query: 590 SPVEGHHFAKK 600
                  F  +
Sbjct: 299 HIPHWQLFDVR 309


>gi|57867492|ref|YP_189155.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus
           epidermidis RP62A]
 gi|57638150|gb|AAW54938.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Staphylococcus epidermidis RP62A]
          Length = 588

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 231/592 (39%), Gaps = 51/592 (8%)

Query: 32  AITQKH--AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89
            +  ++   +  +   +L NR +  +  + +++P+   L PD   L D ++  + +   I
Sbjct: 4   KLKGEYTPNLDPLE-YILSNRGIKEEDYEKYISPT-EELQPDWKKLEDIEEGVKSLKSKI 61

Query: 90  YN-SEKIMIFGDYDVDGAASVALMMRFLS---HCSVNANMYIPDRIVDGYGPNPSLMEKF 145
            + + KI I  D D DG AS ++M +FL+          + IP  +   +G N   + + 
Sbjct: 62  DDDNAKIGILIDADQDGLASGSIMYKFLTKQLQFDKERIIVIPP-LNKSHGINIERVLEH 120

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 ++IT D  S+ ++  +   N+GI+ +VIDHH     +     ++N    D+   
Sbjct: 121 GMTSGDILITPDSASSDFEQHEELYNKGINTLVIDHHLAPKNKDSKAIIINNQLSDE-FE 179

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL--NRAY 263
              L  + + +L  V    +L  D  V       +L DL A+  V D             
Sbjct: 180 NKALTGSAMTYLFCVAYCELLGIDLTV-------NLKDLAAIGLVADRANFAHDLGAYYM 232

Query: 264 VVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           +  GL             + +  N+     + A+++G+ + P+INA  R+G  +  ++++
Sbjct: 233 MRDGLRKENIDSLMLKMIINKSSNLEQGVDLNAKDIGFNVAPTINAVFRMGTQDELTQVI 292

Query: 322 ISDDSQEL--------------EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
                 +               E   ++   + + ++  E+ +L++ + ++  +  D  +
Sbjct: 293 HGMCEFDYTIHNKRKKMDLHISEEAYLRAMAVKRRQKKQENEVLDKIKERIKEKGSDKHK 352

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
             ++   G   + G+ GL+A +L  ++GRP   +    +    GSGR+I    I  +   
Sbjct: 353 ILIVNSTGIVENNGLNGLIAMKLAREYGRPVLMVKRIGE-YFKGSGRNINNSPIPDLNKM 411

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
             + G L    GHA A G+     +   +    +     ++   ++   ++ D     + 
Sbjct: 412 LTDTG-LFTCKGHANAFGVEFHVSDALEVLKAIE---SELIDVNLSDIEYEADFQWT-NN 466

Query: 488 VNIALIDML---ESAGPYGAGNPNPVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQ 542
           ++  +I  L   +    +  G   P+    N  +  ++I+++      +         + 
Sbjct: 467 LDSNIIHTLANNKDM--WCNGIDEPLIHLKNILVRKENIKLIGKTGNTLKINVNG---ID 521

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            + F +      E +         +     VN +RG    QL + + S  + 
Sbjct: 522 CVKFFLKEEQKNEIVTAPDIMYFDLICTASVNSFRGMNTPQLMIEEYSISDA 573


>gi|126667811|ref|ZP_01738778.1| recJ: single-stranded-DNA-specific exonuclease [Marinobacter sp.
           ELB17]
 gi|126627759|gb|EAZ98389.1| recJ: single-stranded-DNA-specific exonuclease [Marinobacter sp.
           ELB17]
          Length = 660

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 155/660 (23%), Positives = 244/660 (36%), Gaps = 125/660 (18%)

Query: 44  ARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           +RVL NR V           S + L+ +P  L D  KA  RI  A+   ++I +  D+D 
Sbjct: 6   SRVLDNRGVRHPEVY-----SPKNLI-NPNGLMDGHKAGMRIAAALIRRQRIALVADFDC 59

Query: 104 DGAASVALMMRFLSHCS---------------------VNANMYIPDRIVDGYGPNPSLM 142
           D A   A+M + L+  S                      +  + +PDR   G+G  PSL 
Sbjct: 60  DSATGAAVMKKGLTLLSETLALAGRPKSTANPVSPDSVSDIQIVVPDRQTHGHGLTPSLA 119

Query: 143 EKFINE-GAQLIITVDCGSTSYDALQYATNQGI--DVIVIDHHQVKSEEIPAYALVNPNR 199
            + I    A LII +  GS +  A           D+IV+DHH         YALV+PNR
Sbjct: 120 TEVIQTLEANLIIALGTGSNAQPAATLIRQWQDAPDLIVLDHHAPAGTAPDTYALVSPNR 179

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF----------DLLSLLDLVALAT 249
            D L     +   G+ F +L+L+ R + +                   +  L DLVAL T
Sbjct: 180 SDCLFESKAIHGTGLAFYMLILVRRCMVELIGGTPRGTAMADRLRAVPMNPLSDLVALGT 239

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQG-------------NPGLKALIERVNISSPITAEN 296
           + D  PL   NR  V  GL    +               + GL+AL+E    + PIT  +
Sbjct: 240 IGDKAPLDANNRLLVKMGLERINKGHQMTAKASHDKGYLSYGLRALLEVAKATYPITTHD 299

Query: 297 LGYMIGPSINAGGRI----GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352
           L       +N+ GR+    G  + G   L++D+  +   LA + D LN  R+  ++A+  
Sbjct: 300 LDVHAAQRLNSVGRLALPAGLPDCGIECLLADNQIDATRLAKRCDDLNTQRKDSQAAVEA 359

Query: 353 QAE------------AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400
            A+              + T   D   A+ + ++ D WH G+VGL+A+RL  + G   F 
Sbjct: 360 HAKATLDSVMADLSRNNLTTHNPDHPPATALAMKDDTWHTGLVGLIASRLATQTGATVFC 419

Query: 401 ISFE-----------------------------------EDGKGIGSGRSIEGFDIGKMV 425
            + E                                   +     GSGRS     +   +
Sbjct: 420 FAPETSAQPPDDAPHNTGTENAVIWQDAHLPETGNPATGDVNWLKGSGRSDS-VHLRDAL 478

Query: 426 SF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT----PVFKI 479
           +F  A    +L++  GHA AA +T+ R +  R      +    ++               
Sbjct: 479 AFIRASNPDLLMQYSGHAGAASVTLYRPHLPRFRRLLTEAVDYLLATAPLQSLKMEALLD 538

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539
           DG L A+A    L   +E   P+G   P P F   + ++   +    AH  M     ++ 
Sbjct: 539 DGPLPATARTFPLAHWIEQ-QPWGNQFPEPQF-TQSFRIVKAQTAMDAHQMMVAVDANAN 596

Query: 540 TLQA----------IAFRVY--GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
                         + F     G+        + G  + +   L V    G    Q  V+
Sbjct: 597 PADGQSGTAEPLQMLWFNSVGLGSNGVTRSALNAGDIVTLIYRLAVKRTHGKNALQGIVV 656


>gi|196227973|ref|ZP_03126840.1| phosphoesterase DHHA1 [Chthoniobacter flavus Ellin428]
 gi|196227376|gb|EDY21879.1| phosphoesterase DHHA1 [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 12/245 (4%)

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           M +QAEA+++ +  D  + + IVV    WHPG+VG++A+RL+++  RP+F + F+  G G
Sbjct: 1   MYQQAEAQLM-ELFDAARDAAIVVGAAGWHPGVVGIVASRLQKRHHRPTFVVGFDGAGIG 59

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
            GSGRSIEG  +   +        L K GGH MAAGLTV   +F      F   A  I+ 
Sbjct: 60  KGSGRSIEGLSLVAALGRC--SDFLEKHGGHEMAAGLTVREGHFAEFRQAFCACAREILT 117

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAH 528
                P  ++D  L    ++  L+D  ES  P+G GNP+P+FA     L    RV+   H
Sbjct: 118 DEQLQPRLRVDAELTLGEIDYELLDQHESLQPFGMGNPHPLFAARGVTLAGEPRVMKEKH 177

Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           L +    Q+ +  +A+ F      L             V   +  N W+G+   Q+ V  
Sbjct: 178 LSLILR-QNGDEYRAVWFNSAAQELPRL-------PWDVAFQIERNEWQGTVSPQIHVRA 229

Query: 589 ASPVE 593
               E
Sbjct: 230 VRRSE 234


>gi|332295058|ref|YP_004436981.1| phosphoesterase RecJ domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332178161|gb|AEE13850.1| phosphoesterase RecJ domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 559

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 128/508 (25%), Positives = 219/508 (43%), Gaps = 40/508 (7%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW   L +  +++++    ++        +L NR +S  + + FL+ SI     DP   
Sbjct: 15  YRWRKPLFENILDKSVYGYVRY--------ILENRQLSESHIERFLSISIDNF--DPKFE 64

Query: 76  TD-CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
            D  ++A       I   E I IFGDYD DG  SVA++  FLS+        +P R  +G
Sbjct: 65  NDRVERAIHIFKNMINADEPIGIFGDYDADGVTSVAILCSFLSYLGKKFIFKLPTR-DEG 123

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG    ++E F + G   I+ +D GS S +  Q A   G++++ +DHH++  +      L
Sbjct: 124 YGIRVEVLEFFKDMGINNIVVLDSGSNSREVWQTARKMGLNLLYLDHHEILCDLEKDLNL 183

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           +NP+    L     LC+AGV+F  L+L+      D          +LL+L  + TV D +
Sbjct: 184 INPH----LWNGDLLCSAGVIFRFLMLL------DIFKNCCEIFPTLLELATIGTVGDSI 233

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314
            L+G +R  V  GL   +    PG+            I+ E+L + + P IN+ GR+G+ 
Sbjct: 234 ELLGDSRIIVKLGLNQLKNSTIPGIVNFFNIKM--PYISIEDLMFYLVPLINSAGRVGKP 291

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374
           +L    L+  +  +       L+ LNQ R+ ++S       + +           V  + 
Sbjct: 292 DLALSFLLEKNFHKSIEKCNLLESLNQKRKSIQSQFFSICMSILNESLYS---PHVHFMR 348

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF----DIGKMVSFAVE 430
            D    GI+G LA+RL   + +P        +    GSGRS        ++   +     
Sbjct: 349 LDNCPKGIIGPLASRLACSYKKP--FFLCSGEQLLYGSGRSPGNDIDLIELYNQIKSEYP 406

Query: 431 --EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                 V  GGH  A G T+++  F  +   F++F         + P   ID + +  ++
Sbjct: 407 AINEHFVNFGGHQGAVGFTIKKDAFPEIKKRFERFRIR-----ESIPFLNIDIIFDGFSI 461

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNH 516
           +      L++  P+G GN   +      
Sbjct: 462 DDNFFRALKAMTPFGFGNQKVLVCTKGI 489


>gi|225551933|ref|ZP_03772873.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia sp. SV1]
 gi|225370931|gb|EEH00361.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia sp. SV1]
          Length = 708

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFAATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L++  + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELIDTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDIGENFIKKYPNFRKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + N+  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNRNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYTTTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ E  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-EYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|307718353|ref|YP_003873885.1| single-stranded-DNA-specific exonuclease [Spirochaeta thermophila
           DSM 6192]
 gi|306532078|gb|ADN01612.1| single-stranded-DNA-specific exonuclease [Spirochaeta thermophila
           DSM 6192]
          Length = 709

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 7/225 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           RW         NR L I+++  +  + + +LV R +   +    F+   +R L  +P + 
Sbjct: 3   RWQKPPI--DKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLH-NPFLF 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A  R++QA    E+I++FGD D DG +S  L+  FL    +  +  +P    + Y
Sbjct: 60  EDMPLAVERVIQAKEEGERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPM-GDEQY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   +E+    G  LIITVDCG +S   +  A   G+DVIV+DHH+ K E  PAYA++
Sbjct: 119 GLSLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAII 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           +P           L   GVV   L  +       +       LL+
Sbjct: 179 DPKVEGSGYPFRDLAGCGVVAKFLWAL--TFGLSDHFNQEVSLLN 221



 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 17/396 (4%)

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
             +       V+F +   +  ++ +   +     ++   DLV L T+ D++PL   NR  
Sbjct: 325 YREKPPEEIDVLFSLFQAV--LMEETGVLRSMERVM---DLVGLGTLADLMPLRNENRIL 379

Query: 264 VVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322
           V +GL+       PGL+AL+ R  +    +   ++ + +GP INA GR+G  ++  RLL+
Sbjct: 380 VREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGPIINASGRMGSPDVAVRLLL 439

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
             D  E E L  +L  LN  R+ +   + ++ + +        ++  V +V  D    G+
Sbjct: 440 CRDPAEAEALGDELIKLNDERKRLGEDLWQRIQPQAYESFTRFKEKFV-LVYHDAVQRGV 498

Query: 383 VGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
            G+LAARL +KF  P+  ++  EE+G+ +GS RS +G  +G +      E +L++ GGH 
Sbjct: 499 TGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQG--VGVLNLLTACEDLLMEYGGHD 556

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
            AAG ++         +   +   ++   L       ID  +  S +   ++ ++E   P
Sbjct: 557 FAAGFSLHPERLEEFIERLVEVVEDLGLPLRGEEPLTIDAEIPPSWMTPDIMKVVEFFAP 616

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           YG  NP     +    ++ I+ +      H++            A+ +        EF  
Sbjct: 617 YGEQNPPLRLLYREAVVRDIQFIGRNGQPHIKFHLAM-GGALWPAVYWGASDKVNVEF-- 673

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            S    + V      N ++  +  QL V+D    EG
Sbjct: 674 -SEDDEVDVVFTPTWNTYQNQETIQLTVVDMRRCEG 708


>gi|332297729|ref|YP_004439651.1| single-stranded-DNA-specific exonuclease RecJ [Treponema
           brennaborense DSM 12168]
 gi|332180832|gb|AEE16520.1| single-stranded-DNA-specific exonuclease RecJ [Treponema
           brennaborense DSM 12168]
          Length = 709

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 3/198 (1%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
                 + ++ A   + A +L  R ++  +  + +L   +R L   P + +  + A  RI
Sbjct: 10  KEVVHELHKRFACDPLAASILARRGITTGEDIQYYLENDVRYLH-SPFLFSAMEDAVDRI 68

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
           + A  + EK++IFGD DVDG  S AL+ R LS   ++    IP    DGYG +   +E+F
Sbjct: 69  LSAKDDGEKVLIFGDRDVDGITSTALLYRCLSGMGIDVQWRIPT-GDDGYGLSLKAVEEF 127

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
             +   LIITVDCG ++   +  A    +DVIV DHH    +  PA  ++NP   D    
Sbjct: 128 AADYGTLIITVDCGISNTTEIARAAELSVDVIVTDHHNPPEQLPPATIIINPKLADSGYP 187

Query: 206 QGHLCAAGVVFLVLVLIY 223
              +    VV+ ++  + 
Sbjct: 188 FKDISGCAVVYKLVSALR 205



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 159/350 (45%), Gaps = 12/350 (3%)

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGY 299
           L LV LA + D++PL   NR  V +GL               L     +   +++ ++ +
Sbjct: 360 LQLVMLAALADIMPLKNENRILVRQGLASINGGVLCPGLTELLARLNLLGKKLSSTDVSW 419

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
            + P +NA GR+G+  L  +L +S+D++E + +A ++  LN++RR + S      E +  
Sbjct: 420 NVVPVLNAAGRLGQPELAVKLFLSEDAKERDEIASRIIQLNKDRRQLGSDAWGYTEKQAY 479

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419
            +  +     ++VV  +R H G+ G+LAA L + F  P+ A++F EDG  +GS RS  G+
Sbjct: 480 -ESFERFGRKLVVVVDERIHRGVSGILAANLVKAFNVPAIAVTFVEDGTAVGSMRSTRGY 538

Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
           D+ ++++      + +  GGH  AAG ++ + N     +   + +  I        + + 
Sbjct: 539 DVTELLAQC--GDLFINHGGHNFAAGFSLVKENVVPFTERLAQLSSGIELGENDEKLPQA 596

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN---LAHLQMTFESQ 536
           D  +    +   L+  ++   P+G  NP   F     K+    ++      HL++T  + 
Sbjct: 597 DAEIPHEWLTPDLLKTVDLFEPFGEENPPLFFFSRKLKIIGADILGKTEKKHLKLTL-AG 655

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
                 A+ +        +F   + G  + V   +  N + G +  QL +
Sbjct: 656 GKTKWPALYWSAAERLGTDF---NVGDTVDVLYQVNRNTFNGMETAQLII 702


>gi|289803643|ref|ZP_06534272.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 364

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 183/362 (50%), Gaps = 9/362 (2%)

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           +++    GAQLI+TVD G +S+  + +A    I VIV DHH        A A++NPN  D
Sbjct: 3   VDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAIINPNLRD 62

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLI 257
                  L   GV F +++ +   LR             +L  LLDLVAL TV DVVPL 
Sbjct: 63  CEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLD 122

Query: 258 GLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315
             NR    +GL   R  +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + +
Sbjct: 123 ANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMS 182

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVE 374
           +G  LL+ D+  E  +LA +LD LNQ R+ +E  M  +A           +       + 
Sbjct: 183 VGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMY 242

Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEG 432
              WH G+VG+LA+R+KE+F RP  A +   DG   GSGRSI+G  +   +         
Sbjct: 243 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPD 302

Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492
           +++K GGHAMAAGL++E   F +    F +     +   +       DG L+A+ +++ +
Sbjct: 303 LMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEV 362

Query: 493 ID 494
             
Sbjct: 363 AQ 364


>gi|284929366|ref|YP_003421888.1| single-stranded DNA-specific exonuclease [cyanobacterium UCYN-A]
 gi|284809810|gb|ADB95507.1| single-stranded DNA-specific exonuclease [cyanobacterium UCYN-A]
          Length = 780

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 109/609 (17%), Positives = 225/609 (36%), Gaps = 51/609 (8%)

Query: 18  WVSLLGQEGINRALAITQKHAIPD---IVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73
           W S    +       I     I      ++++L NRN+ ++D  K FL+      +    
Sbjct: 8   WQSPSLVDLPPSFTNILSSFNISPQENFISQILWNRNIRTVDQLKIFLDCDSYESLSIFE 67

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG---AASVALMMRFLSHC---SVNANMYI 127
             ++   +  R+  A+ N EK++I G    +G     S +L+   L +        N YI
Sbjct: 68  GWSEVIPSVYRLKAAVQNKEKVIICG---KEGLNSIISTSLLWEGLGNFLIPYTQLNYYI 124

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           P      +G N + +++F  E   LIIT      S   L  A + GID+I I  +     
Sbjct: 125 PSYSTRCHGFNTASIKQFAIEEVNLIITCGIKDFSLQDLSLAKSFGIDIIAIGRNINPVN 184

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                  ++   L        L    + + ++  ++  + +      + +L +LLDLVA+
Sbjct: 185 LKDLIYTIDSYSLSVDHPFFDLSETSLAYKLIESLHTEIPK----TPSDNLDNLLDLVAI 240

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMIGP 303
            ++  ++ L    R    KG+   ++Q      PG+  L+    +S      ++ + IG 
Sbjct: 241 NSISTLLKLNIELRYLTKKGIQNLQKQLKNPSRPGIAYLLYLCKLSGN-RPTDICFGIGS 299

Query: 304 SINAGGRIGESN-LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362
            IN+   + +S+     LL + D    E LA++ ++ N     ++  ++      +  + 
Sbjct: 300 RINSVCCVNKSSSFLIELLTNKDKDYSEKLALEAELANIRCNNLQQYIIRNIRQTL--KA 357

Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE------DGKGIGSGRSI 416
            D+    VIV+E   W   I+ L+   +  ++ +P+  ++  E             G + 
Sbjct: 358 IDLSITQVIVLENPEWESEILKLIVQEVSCEYNKPTILLTTVECKENEQQNLNFSKGYAY 417

Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMA--AGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
              +I      + +  +L    G   +    L++   N     +   ++       + T+
Sbjct: 418 SSNNISSYELISSQHDLLYSFYGEEYSDLVDLSLSNENIPLFRERANQYLRQKYVEIDTS 477

Query: 475 PVF-KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-----SIRVVNLAH 528
               + D  +  S +  +L   L+   PYG GN  P     N  L+     + +     +
Sbjct: 478 KSIVETDLTVTVSQLGQSLFRELKILEPYGIGNLVPKLLIKNCYLKISKNNNGKTFKNHN 537

Query: 529 LQ-----MTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR-GSKR 581
           L+      T     ++     + +          L      +  V   L  +  + G+  
Sbjct: 538 LKYVKTEFTLYDSSTKKGFPGVWWGHSKGE----LQNKEDIKYDVIVELGYSNLQPGNYE 593

Query: 582 CQLR-VLDA 589
            +L  + + 
Sbjct: 594 VRLIEIQEI 602


>gi|257457097|ref|ZP_05622274.1| single-stranded-DNA-specific exonuclease RecJ [Treponema vincentii
           ATCC 35580]
 gi|257445476|gb|EEV20542.1| single-stranded-DNA-specific exonuclease RecJ [Treponema vincentii
           ATCC 35580]
          Length = 711

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 12/354 (3%)

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYM 300
           L LVAL+ + D++ L G NR  V +GL         GL  L+ +   I   I   ++ + 
Sbjct: 358 LQLVALSLLADLMQLTGENRILVKQGLAAINAAPRAGLSELMIKQGLIGKQIGTNDIAWN 417

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           I P INA GR+G+     RL +  D      LA  +  +N++R+ +       AE     
Sbjct: 418 ITPVINATGRMGKPETAIRLFLEKDPGVRNELATAIIAMNEDRKELGKTGWAVAEPIARE 477

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                ++   +VV  D+ H GI G+L+ RL ++F  PS  I   E+G  +GS RS  G+ 
Sbjct: 478 SLAKYREKLTVVV-SDKIHRGITGILSNRLADRFNVPSMVICLMENGTAVGSLRSARGYR 536

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479
           +  ++         +  GGHA AAG ++ +          Q+F   I        P   I
Sbjct: 537 VLSLLEA--YPDFFLDYGGHAFAAGFSLMQEKVAPFLKKVQEFTAAIEFDENSEHPSLAI 594

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL---AHLQMTFESQ 536
           D  L    +   L+ +L++  PYG G P  +FA     + +  ++      HL++T    
Sbjct: 595 DAELPHGYLTPDLLTVLDTFEPYGEGFPPLLFAVKGVTITAASIMGKTQPQHLRLTL-DC 653

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +    A+ ++       EF +   G  +     +  N + G+   Q+ + D  
Sbjct: 654 GTYKWTAVYWQAADKLNVEFKI---GDSIDAVFTVSRNSFNGNTVPQMVIQDMR 704



 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
            W        I    ++ Q++    +VA +L+ R ++    A   L   +R +  +P + 
Sbjct: 2   NWEKKDIDPDI--VRSMAQQYGCSPLVASILLRRGIAEGSEAFFHLENDLRYVH-NPFLF 58

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           T+ + A  R++ A    E+++IFGD D DG  +V ++   L+   +     IP    + Y
Sbjct: 59  TNMEDAVDRLLDAKEEGERVLIFGDRDADGITAVTVLYEALTDLGILTTWRIPT-GDEPY 117

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++    +G  LI+TVDCG ++ + + YA  +GIDVIVIDHH  + +   A  ++
Sbjct: 118 GLSCEAVDAHEADGGTLIVTVDCGISNIEEIAYAAEKGIDVIVIDHHTPQDKLPDAAVII 177

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           N           HL      + V+V +       +       LL+
Sbjct: 178 NCKVPGSGYPNSHLSGCATAWKVVVALR--FGLLDIYKQQICLLN 220


>gi|158834161|gb|ABW81885.1| 5'-3' exonuclease [Candidatus Regiella insecticola]
          Length = 298

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 157/298 (52%), Gaps = 8/298 (2%)

Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           A S AL +  L      +    +P+R  +GYG +P ++E    + A LI+TVD G +S  
Sbjct: 1   ATSTALAVLALRSMGAKDVKYLLPNRFEEGYGLSPMIVELVARQNAALIVTVDNGISSPA 60

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
            ++ A  +GI V+V DHH        A A++NPN          L   GV F +++ +  
Sbjct: 61  GVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLMLALRA 120

Query: 225 ILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQGNPGL 279
            L+ +           +L  LLDLVAL TV DVVPL   NR  + +GL  +  ++  PG+
Sbjct: 121 RLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILIHQGLSRIRAKRCRPGI 180

Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           +AL++        + A +LG+ +GP +NA GR+ + ++G  LL+SDD     +LA +L+ 
Sbjct: 181 QALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILAEELNT 240

Query: 339 LNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395
           LNQ RR +E  M  +A A     +  D      I +   +WH G+VG+LA+R+KE+F 
Sbjct: 241 LNQERREIEQGMQLEALALCNALEDSDHILPYGIAMYHKKWHQGVVGILASRIKERFH 298


>gi|216264336|ref|ZP_03436328.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           156a]
 gi|215980809|gb|EEC21616.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           156a]
          Length = 708

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I  + A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTLEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|315186022|gb|EFU19785.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta
           thermophila DSM 6578]
          Length = 709

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 5/207 (2%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75
           RW         NR L I+++  +  + + +LV R +   +    F+   +R L  +P + 
Sbjct: 3   RWQKPPI--DKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLH-NPFLF 59

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D   A  R++QA    E+I++FGD D DG +S  L+  FL    +  +  +P    + Y
Sbjct: 60  EDMPLAVERVIQAKEERERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPM-GDEQY 118

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   +E+    G  LIITVDCG +S   +  A   G+DVIV+DHH+ K E  PAYA++
Sbjct: 119 GLSLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAII 178

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           +P           L   GVV   L  +
Sbjct: 179 DPKVEGAGYPFRDLAGCGVVAKFLWAL 205



 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 174/396 (43%), Gaps = 17/396 (4%)

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
             +       V+F +   +  ++ +   +     ++   DLV L T+ D++PL   NR  
Sbjct: 325 YREKPPEEIDVLFSLFQAV--LMEETGVLRSMERVM---DLVGLGTLADLMPLRNENRIL 379

Query: 264 VVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322
           V +GL+       PGL+AL+ R  +    +   ++ + +GP INA GR+G  ++  RLL+
Sbjct: 380 VREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGPVINASGRMGSPDVAVRLLL 439

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
             DS E E L  +L  LN  R+ +   + ++ + +        ++  V +V  D    G+
Sbjct: 440 CRDSAEAEALGDELLKLNDERKRLGEDLWQRIQPQAYESFTRFKEKFV-LVYHDAVQRGV 498

Query: 383 VGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
            G+LAARL +KF  P+  ++  EE+G+ +GS RS +G  +G +      E +L++ GGH 
Sbjct: 499 TGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQG--VGVLNLLTACEDLLMEYGGHD 556

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
            AAG ++         +   +   ++   L       ID  +  S +   ++ ++E   P
Sbjct: 557 FAAGFSLHPERLEEFIERLVEVVEDLGLPLRDEEPLIIDAEIPPSWMTPDIMKVVEFFAP 616

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           YG  NP     +    ++ I+ +      H++            A+ +        EF  
Sbjct: 617 YGEQNPPLRLLYREAVVRDIQFIGRNGQPHVKFHLAM-GGSLWPAVYWGASDKVNVEF-- 673

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
            S    + V      N ++  +  QL V+D    EG
Sbjct: 674 -SENDEVDVVFTPTWNTFQNQETIQLTVVDMKRCEG 708


>gi|15594599|ref|NP_212388.1| single-stranded-DNA-specific exonuclease (recJ) [Borrelia
           burgdorferi B31]
 gi|2688156|gb|AAC66639.1| single-stranded-DNA-specific exonuclease (recJ) [Borrelia
           burgdorferi B31]
          Length = 708

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFRKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDGNILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|226320554|ref|ZP_03796114.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           29805]
 gi|226233973|gb|EEH32694.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           29805]
          Length = 708

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNVYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|225550130|ref|ZP_03771090.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           118a]
 gi|225369242|gb|EEG98695.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           118a]
          Length = 708

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 181/476 (38%), Gaps = 32/476 (6%)

Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167
           S  ++ ++L   +   +  I    ++ +  N               I +       + L 
Sbjct: 238 SNYILKQYLR-LNNKNDPLINSNKLEKFVQNK-------------CIIIFNKEDQNELLN 283

Query: 168 YATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227
               + I++  ID  +   ++ P +       L   +         +   +  + Y ++ 
Sbjct: 284 KHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEVEIKDKLYYIFYNVIF 343

Query: 228 QDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287
           + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL     +    +  L++  N
Sbjct: 344 ETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIALRERMSINYLLKDAN 402

Query: 288 I--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345
           I     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E    ++  +N+ R+ 
Sbjct: 403 ILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIENKFKEIKEINELRKY 462

Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405
            E             +    +    IV   +    GI   +A RL   + + +  ++ ++
Sbjct: 463 KEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRLSSYYQKVAIFLTKQD 517

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
                GS RS    +   ++S      ++   GGH  AAG T+            +    
Sbjct: 518 -NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHENLLEDFIKELEYATT 575

Query: 466 NIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524
            +            ID +L  +    +L   +E   PYG     P+    N  LQ ++++
Sbjct: 576 KVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREPILLMKNAYLQELKII 635

Query: 525 NL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
           +      H+ M  +SQ+ +  +AI F   GT   E L     + + +   +  +++
Sbjct: 636 DKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYLDIIFTVNEDFY 688


>gi|225549170|ref|ZP_03770145.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           94a]
 gi|225370396|gb|EEG99834.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           94a]
          Length = 706

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 150/367 (40%), Gaps = 18/367 (4%)

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
            +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL     +  
Sbjct: 331 KLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIALRER 389

Query: 277 PGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E    
Sbjct: 390 MSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIENKFK 449

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           ++  +N+ R+  E             +    +    IV   +    GI   +A RL   +
Sbjct: 450 EIKEINELRKYKEEKAWNS-----HDKNTIFKNDKFIVCYDNNTPKGISSRIATRLSSYY 504

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
            + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+      
Sbjct: 505 QKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHENLLE 562

Query: 455 RLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513
                 +     +            ID +L  +    +L   +E   PYG     P+   
Sbjct: 563 DFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREPILLM 622

Query: 514 PNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
            N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + + +  
Sbjct: 623 KNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYLDIIF 679

Query: 570 HLCVNYW 576
            +  +++
Sbjct: 680 TVNEDFY 686


>gi|224533136|ref|ZP_03673736.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           WI91-23]
 gi|224511863|gb|EEF82264.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           WI91-23]
          Length = 708

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKNININTIDISENFIKKYPNFRKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HDKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|221217762|ref|ZP_03589230.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           72a]
 gi|221192439|gb|EEE18658.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           72a]
          Length = 708

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|224533722|ref|ZP_03674310.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           CA-11.2a]
 gi|224513015|gb|EEF83378.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           CA-11.2a]
          Length = 708

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQTQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|312149627|gb|ADQ29698.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           N40]
          Length = 708

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQTQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ I++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQEIKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|223888713|ref|ZP_03623304.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           64b]
 gi|223885529|gb|EEF56628.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           64b]
          Length = 708

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK  +RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNVYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|226321572|ref|ZP_03797098.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           Bol26]
 gi|226232761|gb|EEH31514.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           Bol26]
 gi|312148300|gb|ADQ30959.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           JD1]
          Length = 708

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK  +RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|218249182|ref|YP_002374777.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           ZS7]
 gi|218164370|gb|ACK74431.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi
           ZS7]
          Length = 708

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK  +RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 167/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +         L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNKLLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|195941392|ref|ZP_03086774.1| single-stranded-DNA-specific exonuclease (recJ) [Borrelia
           burgdorferi 80a]
          Length = 708

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK  +RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV   +    GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HDKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L  +    +L   +E   PYG     P
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|237733214|ref|ZP_04563695.1| single-stranded-DNA-specific exonuclease recJ [Mollicutes bacterium
           D7]
 gi|229383758|gb|EEO33849.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp.
           D7]
          Length = 587

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 120/484 (24%), Positives = 203/484 (41%), Gaps = 46/484 (9%)

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
            DP +L D   AA  I++     +KI I GDYD DG  + +++   +   + N N  IPD
Sbjct: 43  HDPRLLNDAQSAAEYILKT---DKKIFICGDYDCDGIMATSILFNTIKQFNSNVNFMIPD 99

Query: 130 RIVDGYGPNPSLMEKFINEGAQ---LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
           RI+DGYG N  +++    +      LI+T D G   ++A+ YA + G+ VIV DHH V  
Sbjct: 100 RIIDGYGLNIRMIDVIKTQVPPNEVLILTCDNGIACFEAIDYAKSLGMTVIVTDHHTVGE 159

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           +   A  +V+P           +  A V + +   +   +   N   L           A
Sbjct: 160 KLPNADFIVHPAL--GNYPFKEISGATVAYKLCQ-LIIEMGGLNIPNLEISNKQF---AA 213

Query: 247 LATVCDVVPLI---------GLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAEN 296
           +  V DV+P+            NR  + +G+   R   +  +K L E  N +   +    
Sbjct: 214 ITVVSDVMPICSYYYDTMKVNENRRLLQEGITSMRNNPDWHIKMLSEMCNFNMETLDETT 273

Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQE--LEMLAMKLDVLNQNRRLMESAMLEQA 354
           +G+ I P +NA GRI +++        +        +    L  LN+ R+ M+ A L +A
Sbjct: 274 IGFNIAPVLNASGRIAKADYAVDFFTKEQKDRDAAIVDCSYLVYLNEERKKMKIAELNKA 333

Query: 355 EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---KGIG 411
           E+ V  +   +             H G++G++A +  +K+  PS   +  +        G
Sbjct: 334 ESVVCGKSIKLA-------FYPELHKGLIGIVAGQFTDKYKVPSGIFTQVKKDGTVLWTG 386

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA--HNIVP 469
           S RS     +   ++   ++  +V  GGHA AAG+T+   N        +K+   +   P
Sbjct: 387 SMRSNT-VHLYNALTEISKKCPIVAFGGHAGAAGITIADENIDLFKQIAEKYFYTNACEP 445

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAH 528
           A     V     VL+A          ++   P+G G P P   F N    S+ V     H
Sbjct: 446 ANYAIEVKDYRSVLDAGEC-------IKELKPFGNGLPKPQVKF-NFFCTSVDVFYKSGH 497

Query: 529 LQMT 532
           ++++
Sbjct: 498 VKLS 501


>gi|323341705|ref|ZP_08081938.1| hypothetical protein HMPREF0357_10118 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464130|gb|EFY09323.1| hypothetical protein HMPREF0357_10118 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 510

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 108/516 (20%), Positives = 222/516 (43%), Gaps = 45/516 (8%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           ++A   +++    + K+++ GDYD DG +S ++ +     C +    YIP+R+ +GYG +
Sbjct: 36  NEAIDSMIRFYQTATKLIVCGDYDCDGVSSTSIAVLLAKKCKIEVGYYIPNRLKEGYGVS 95

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
              +      G + ++ +D G  +++ + YA + G+ V V+DHH +    + A A ++P+
Sbjct: 96  KDTITMAHERGYKDVLIIDNGVKAHEEIAYAKSLGMQVAVVDHHIIDEPVM-ADAFLHPD 154

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG 258
                S +  +CA+G+++ V       +   ++         +L +   ATV DV+PL G
Sbjct: 155 V--CSSYEASMCASGLIYCV----AETMGLSDEY--------MLAMACTATVADVMPLWG 200

Query: 259 LNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SN 315
            NR  V KG+    +       AL++R   +   +A+ L +   P IN  GR+G+    N
Sbjct: 201 KNREIVRKGIHALNQNQFLQFDALVKRNRFTHY-SAKLLSFQAIPKINTVGRLGDLANVN 259

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
              +   + D   +   A +L  LN  R+    A+ E A  +V           + ++  
Sbjct: 260 TLVQYFTTTDESVITSYAKQLFKLNDYRKEQGKALKEVAMMQV-------NDDPIQIIVD 312

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
            R+H G++G++A ++ ++  +P+  ++  +     GS RS+  F +  + +        V
Sbjct: 313 KRFHEGLLGIVANQVAQETMKPTLVLTEYD-NVLKGSARSMT-FSLQDIFTEV-RSDYFV 369

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGH  A G+T+ +  F        +   +                ++ S +  A ++ 
Sbjct: 370 AMGGHDFAYGMTLNKATFEDFKSDVNQIVSDFGAFEGRHESV---LSIDPSWITQAALEQ 426

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ-AIAFRVYGTPLG 554
           L    P+G G   P+ +    +   +  +N    +  F   +  +   A+ F        
Sbjct: 427 LRQLEPFGEGFKLPLMSIKIPRDFQLFNLNGYGFKYAF---NGFSFDEAVFF---TQQYQ 480

Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           ++ +Q+  +   + G L ++      +  L V D  
Sbjct: 481 KYQLQTARR---LIGTLDLDS---RSKNVLFVEDFE 510


>gi|219684751|ref|ZP_03539694.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii
           PBr]
 gi|219672113|gb|EED29167.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii
           PBr]
          Length = 708

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W        I     I +++ I    A +L+ R +  +    FL  S   L+ +P +L
Sbjct: 2   KIWKQKETNIPIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDS-TNLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DK   RI +AI ++E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KDIDKFINRINKAIKDNESILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH    +      ++
Sbjct: 120 GLSKELINMALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%)

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
                   +   +  + Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  + 
Sbjct: 322 YFRYKEVEIKDKLYYIFYNIIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILK 380

Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL     +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L++
Sbjct: 381 AGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLA 440

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           DD  ++E    ++  +N+ R+  E             +    +    IV        GI 
Sbjct: 441 DDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 495

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
             LA RL   + + +  ++ ++     GS RS    +  K +   +   +++  GGH  A
Sbjct: 496 SRLATRLSAYYQKVAIFLTKQD-NIIKGSIRSNNKIN-SKALISTIPSHLIINSGGHKAA 553

Query: 444 AGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AG T+            +     +            ID ++  +    +L   +E   PY
Sbjct: 554 AGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDAIVPKNLTKDSLFKTIEIFEPY 613

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           G     P+    N  LQ ++ ++      H+ M  +SQ+ +  +AI F   GT   E L 
Sbjct: 614 GYEFREPILMMENVYLQELKTIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 670

Query: 559 QSRGKRMHVTGHLCVNYW 576
               + + +   +  +++
Sbjct: 671 IKENQYLDIIFTINEDFY 688


>gi|51598514|ref|YP_072702.1| single-stranded-DNA-specific exonuclease [Borrelia garinii PBi]
 gi|51573085|gb|AAU07110.1| single-stranded-DNA-specific exonuclease [Borrelia garinii PBi]
          Length = 708

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W        I     I +++ I    A +L+ R +  +    FL  S   L+ +P +L
Sbjct: 2   KIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDS-TNLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D DK   RI +AI  +E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KDIDKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH    +      ++
Sbjct: 120 GLSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%)

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
                   +   +  + Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  + 
Sbjct: 322 YFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKR-LSFVAIGTIADNMPIINENRIILK 380

Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL     +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L++
Sbjct: 381 AGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLA 440

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           DD  ++E    ++  +N+ R+  E             +    +    IV        GI 
Sbjct: 441 DDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 495

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
             LA RL   + + +  ++ ++     GS RS    +  K +   +   +++  GGH  A
Sbjct: 496 SRLATRLSAYYQKVAIFLTKQD-NIIKGSIRSNNKIN-SKALISTIPSHLIINSGGHKAA 553

Query: 444 AGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AG T+            +     +            ID ++  +    +L   +E   PY
Sbjct: 554 AGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTKDSLFKTIEIFEPY 613

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           G     P+    N  LQ ++ ++      H+ M  +SQ+ +  +AI F   GT   E L 
Sbjct: 614 GYEFREPILMMENVYLQELKTIDKNHNSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 670

Query: 559 QSRGKRMHVTGHLCVNYW 576
               + + +   +  +++
Sbjct: 671 IKENQYLDIIFTINEDFY 688


>gi|251772535|gb|EES53101.1| putative RecJ exonuclease [Leptospirillum ferrodiazotrophum]
          Length = 555

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 123/594 (20%), Positives = 216/594 (36%), Gaps = 67/594 (11%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W         +   A+++   +  +  RVL+ R +     + +         P    L
Sbjct: 12  RDWDVQ--DTDESSVYALSRAWGLDPVWVRVLLGRGIDK---RSYERDITSPAPPGDDSL 66

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            +  +        + + E ++++ D DVDG +S A++ RF      +  + + +R  DG 
Sbjct: 67  GEMAEPRAWFHDLLSSGEPVLVYADLDVDGLSSAAILSRFFRLRHHSHAVLLANR-EDGR 125

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
              PS +  F  +G + II  D G++S D L+    +G+  +V+DHH V  E       +
Sbjct: 126 SLLPSRIRPFQKKGFRRIIVCDMGTSSADVLRMLLGEGMSCLVVDHHLVPEEWPRHSVPL 185

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
                   S      AA         + R      + P    L        L+ + D  P
Sbjct: 186 VH--PSGRSALTSAGAAYT-------LIRPYLSSEEEPQMAFL------AGLSVLGDRAP 230

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
           LI  NR   +  L        PG++ L+ R    +PI   +  + + P +NA GR+G+ +
Sbjct: 231 LIRENRYLTLSLLSEETLAVFPGIRLLLRRRVRRAPI-VSDYSFGVIPFLNAPGRMGDPS 289

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
               LL+S  + E E     L  +N+ R+ +E  + E+   K   +          V   
Sbjct: 290 PSFDLLMSSSAGESEKTVAVLLEMNRRRQELEWLLYEEIRRKGPEE---------FVFFD 340

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             W PG++G +A R+ E++ R  F  +        GS R   G     +++     G+ +
Sbjct: 341 KDWFPGVLGRVAHRVSEEWNRTVFVGTMTASFTIRGSIRCRNGDRFSDIMAAL--SGLPI 398

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHN--------IVPALITTPVFKIDGVLNASA 487
            GGGH MA GL         +     +  +          +         +ID  L A  
Sbjct: 399 TGGGHPMAGGLEFPADLLPEVSRRLSRLINTSPLNPEGGTMEGGDERDPLRIDAFLPAYF 458

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
            N    +      P+G G   P+F     +++              E  + + +QA A+R
Sbjct: 459 RNPIFWEGYRKLFPFGEGFSRPLFGVRRARIE------------RLEEGNGK-MQACAYR 505

Query: 548 VYGTPLGEFLMQ-----SRGKRMHVTGHLCVNYWRGS----KRCQLRVLDASPV 592
                   F  +     S G+   +     +   RG     +R    V D  P 
Sbjct: 506 WRHGSGRAFFREGEAILSPGQDYDLVVTPEI---RGKGDYLERL-FVVADYRPA 555


>gi|4101624|gb|AAD01239.1| unknown [Borrelia burgdorferi N40]
          Length = 476

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQTQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score = 57.5 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 3/202 (1%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLE 352
               ++  +N+ R+  E     
Sbjct: 448 NKFKEIKEINELRKYKEEKAWN 469


>gi|325273844|ref|ZP_08140026.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp.
           TJI-51]
 gi|324101021|gb|EGB98685.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp.
           TJI-51]
          Length = 210

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 8/214 (3%)

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGG 438
           G++G+LA+RLKE++ RP+ A +    G   GS RS+ GF I   +    A    ++ K G
Sbjct: 1   GVIGILASRLKERYHRPTIAFADAGAGMLKGSARSVPGFHIRDALDAVAARHPQLISKFG 60

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGL++   NF    + F +     +     T     DG L     ++ L   L +
Sbjct: 61  GHAMAAGLSLPEANFPAFAEAFDEEVRRQLREDDLTGRLLSDGSLAVEEFHLDLAKALRN 120

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFL 557
           AGP+G   P P+F     +L   RVV   HL++  +S+  S  L  IAF +      +  
Sbjct: 121 AGPWGQHFPEPLFHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDR----DVW 175

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
                + + +   L VN +RG++  QL +    P
Sbjct: 176 PNPTVRWVELAYKLDVNEFRGNESVQLMIAHMEP 209


>gi|260889847|ref|ZP_05901110.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           hofstadii F0254]
 gi|260860453|gb|EEX74953.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           hofstadii F0254]
          Length = 244

 Score =  179 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 10/230 (4%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
           +W      E    +   + +     +++R+L+NR + + +    FLN   + +  +P + 
Sbjct: 18  KWELKSYNEDYLTSK--SSEFGESKLISRLLLNREINTKEKVSKFLNSDKKDIH-NPFLF 74

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +K   RI +A  N EKI+I+GDYDVDG + VA ++  L    +N + YIP+R+ +G 
Sbjct: 75  ENMEKVVERIKKAGRNKEKIVIYGDYDVDGISGVAYLVIMLRKLGLNVDYYIPNRVHEGI 134

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH------QVKSEEI 189
           G N +L+       A+L ITVD    + + +    N GID+I+ DHH      +   +E 
Sbjct: 135 GINKNLLNFLKKRDAKLFITVDISINNCEEILMLKNSGIDIIITDHHRQIGILEDGEQEK 194

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239
               L    +   +     L  +GV F +   IY     + K      +L
Sbjct: 195 ELDILTINPKTSSIYPNKSLSGSGVAFKLADAIYERYGANKKYCTIIWML 244


>gi|255027798|ref|ZP_05299784.1| hypothetical protein LmonocytFSL_18151 [Listeria monocytogenes FSL
           J2-003]
          Length = 323

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 15/333 (4%)

Query: 268 LMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326
           +   R   N GL  L ++ ++     T E +G+ + P +NA GR+G ++  + LL+++D 
Sbjct: 1   MRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLLTEDP 60

Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386
           +E   LA ++D  N+ R+ +     + A   +  +       +V+VV G+ W+ GI+G++
Sbjct: 61  EEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVLVVYGEGWNTGILGIV 117

Query: 387 AARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG 445
           A++L   + RP+  +  +   G   GSGRS++ F + +         +++  GGH MAAG
Sbjct: 118 ASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKHRDLMMAFGGHPMAAG 175

Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505
           LT+   N   L    Q+ A   +      P  KI+  +  + V++A I  LE   P+G  
Sbjct: 176 LTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSVAFIAQLEKLAPFGMD 234

Query: 506 NPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRG 562
           NP P+F   N  L+  + +     HL+    +++++ TL +I F V           S  
Sbjct: 235 NPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFGVGDL----VDKISPT 290

Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
             + V G L +N W   K+ QLR++D       
Sbjct: 291 AAVDVVGELSINEWNNVKKPQLRMMDIHISHWQ 323


>gi|224532079|ref|ZP_03672711.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia valaisiana
           VS116]
 gi|224511544|gb|EEF81950.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia valaisiana
           VS116]
          Length = 708

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W   +          I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKVINIQPEELSRIVKQYNINHFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI  +E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH    +      ++
Sbjct: 120 GLSNELINMALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFQTESIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +         L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 YIVIFNKEDQGQLLNKHFKRSINMNTIDISENFIKKYPNFRKKTLKDLIQATKYFKYKKI 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  +   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNLIFEINKNLIQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     ITA ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMPINYLLKDANILTKPNITATDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E            ++   ++    IV        GI   +A RL
Sbjct: 448 NKFKEIKKINELRKYKEEKAWNS-----HSKNTILKNDKFIVCYDKNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ ++     GS RS    +   ++S      +++  GGH  AAG T+  
Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKALISIV-PSHLIINSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID +L       +L   +E   PYG     P
Sbjct: 561 NLLENFIKELEYATTKVEYETTNENESISIDAILPKDLTKDSLFKTIEIFEPYGYEFREP 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 ILMMENAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELNIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|290953249|ref|ZP_06557870.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313529|ref|ZP_06804122.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 383

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 167/393 (42%), Gaps = 22/393 (5%)

Query: 209 LCAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVV 265
           +    V +L +  + R  L+ +  +  ++ L +LLD VA+ TV D V +     NR    
Sbjct: 1   IAGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTK 60

Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325
            G+   +         +         +++E +G+ I P +N+ GR+ ++      L+ +D
Sbjct: 61  FGIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEED 115

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385
             ++E +   L   N  R+ ++  + ++A  +        QQ + + +  +  H GI G+
Sbjct: 116 EHKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGI 172

Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHA 441
            A+R+KE FG+     S  +    + SG +    +I            E  +++K GGH 
Sbjct: 173 SASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHK 232

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESA 499
            AAGLT+++ +F +    F+    +I+        P+ + D  L+     +  +D +++ 
Sbjct: 233 GAAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDAL 292

Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557
            P+G     P+F      L+++R+V     H Q+    ++  +++AI F      + E L
Sbjct: 293 EPFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQL 351

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           +   G  +     L    + G     L +    
Sbjct: 352 II--GDCIKACYELQKEEFLGQINLSLNIKTIE 382


>gi|296126378|ref|YP_003633630.1| single-stranded-DNA-specific exonuclease RecJ [Brachyspira
           murdochii DSM 12563]
 gi|296018194|gb|ADG71431.1| single-stranded-DNA-specific exonuclease RecJ [Brachyspira
           murdochii DSM 12563]
          Length = 719

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/436 (22%), Positives = 182/436 (41%), Gaps = 20/436 (4%)

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              YD++      G     ++    K+ +  A AL       D      L     +F  +
Sbjct: 299 LPEYDSVYDLLQLGAKYGNVNIKTTKTLDDFALALNINIYKYDNIEYRDLIIKTEIFRRM 358

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             I +         L   +     LV   TV DVVPLI  NR YV   L    +  +   
Sbjct: 359 FYISQK-------NLQNYIRKKSILVLFGTVADVVPLIEENRVYVKCALKELEKPSHIRY 411

Query: 280 KALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
             ++E++N+ ++ +  + + + I P INA GR+G +    +LL  +  +E   LA  +  
Sbjct: 412 NVMLEKINLLNTKVDTQVISWRIAPFINAAGRMGSAETALKLLTCELREEAVSLAETVYS 471

Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
           +N+ R+ +  +        +  + +   +  +I+V   +   G+ GL+A ++  ++G+ +
Sbjct: 472 MNETRKSLTESNFNIVNEYI--KNNSCLKLPIIIVRSKKIEQGLTGLIAGKVLSEYGKTA 529

Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
             +   +DG  +GS RS    +   ++  A     L K GGH  AAG T+   NF +   
Sbjct: 530 VIMHESDDGTCVGSIRSRGDDNARDLLEAA--SVYLTKFGGHKNAAGFTLSSDNFDKFQS 587

Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518
              K+A N             D  L+ +++++ L   LE   PYG+GN  P+F   N K+
Sbjct: 588 KIIKYAANQNFNTEKDNDV-FDLELDFNSIDLKLAKDLELFEPYGSGNEEPIFISKNVKV 646

Query: 519 QSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
             I+ +      HL++     D + + AI +      + + L  +    + +   L VN 
Sbjct: 647 NDIKKMQKNNKLHLRLELLQSD-KKINAIIWNSSEEEVLKLLNSN---YIDIIYKLKVNR 702

Query: 576 WRGSKRCQLRVLDASP 591
           +  S+  ++ + +   
Sbjct: 703 YANSEDARIYIENYKV 718



 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 3/186 (1%)

Query: 38  AIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            +  I+  +L  R ++  +   DF    I  L  +P  + D +    R+ +AI ++EKI+
Sbjct: 6   NLHPIMKELLNLRGITSKEDIFDFFFQDIYSL-SNPFSIKDVNVFVARLKEAIESNEKIL 64

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           ++GD D DG  + +++   L   + N   ++P+    GYG +  ++E++ N G  LIITV
Sbjct: 65  VYGDKDADGVTAASIIYNTLKMVTKNVEAFVPN-HETGYGLSKMVIEEYANSGVSLIITV 123

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           DCG ++ + +++A +  ID+IV DHH +      AYAL NP   +      +     V F
Sbjct: 124 DCGISNVEEVEFARDLSIDIIVTDHHDIPEIMPNAYALFNPKISNTGFVSKNFSGCAVAF 183

Query: 217 LVLVLI 222
            ++   
Sbjct: 184 KLMQAF 189


>gi|325971472|ref|YP_004247663.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta sp.
           Buddy]
 gi|324026710|gb|ADY13469.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta sp.
           Buddy]
          Length = 709

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 5/207 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILT 76
           W              + +++ +  + A +LV R  VS +  K FL   +  L  +P +  
Sbjct: 3   WN--KSPVSAQEIRRLHEQYGLDMLSASILVRRGQVSSEQVKFFLEQELTYLH-NPFLFD 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D ++   RI +AI   EK+ + GD DVDG  S AL+++ L    +     +P+   D YG
Sbjct: 60  DMEEVVDRINEAIVEGEKVCVVGDRDVDGITSTALLVQELRTMGLEVGYQLPE-GDDPYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                ++K   +   L+ITVDCG +++  + +A + GID IV+DHH       PA A+++
Sbjct: 119 MTLRGVDKAYEDKVTLMITVDCGISNFAEIAHAHSLGIDTIVLDHHISGDTLPPALAIID 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           P          HL   GVV  V+  + 
Sbjct: 179 PKMPGSGYPFEHLAGCGVVAKVIWALR 205



 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 107/468 (22%), Positives = 195/468 (41%), Gaps = 24/468 (5%)

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA----- 191
             PS  +        L I V         L+ A ++ ID+ V+D        +P      
Sbjct: 253 LPPSQSKALAFLSCGLPILVLDAQAELVQLKQAFSKKIDIHVVDMRSQMEAVMPVMKNKG 312

Query: 192 -YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
            +AL N +R    S  G      V+F + V             L+ +  S+LDLVA+ TV
Sbjct: 313 LFALSNISRAIKYSPFG-KDELQVLFTLFVAYC----MKRYPGLDTEYESILDLVAIGTV 367

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGG 309
            D++P+   NR  V +GL V  +     L  L    N+    ++  ++ + I P INA G
Sbjct: 368 ADLMPMEDENRIMVKRGLKVLAQGRRESLMPLFSMQNLLGKQLSTSDISWQISPVINASG 427

Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369
           R+G+ ++   +++S+D  + E LA +L  LN+ R+ +     ++          +   + 
Sbjct: 428 RMGKPSVALEMMLSNDISQTEELAGQLLRLNKERQKLGEEAWDRMLKMA-KDSFEATGSK 486

Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429
           ++VVE      GI G++A+RL ++F  P+  ++   +G+   S RS + F+       + 
Sbjct: 487 LVVVEDSTLSRGITGVMASRLLKQFNAPAIVLATVAEGRVSASMRSPDSFNARDF--LSR 544

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              + +  GGHA A G +++                ++           ID  L  + + 
Sbjct: 545 FSDLFLDFGGHACAGGFSMDISQLEIFKKRVMDEIDSMDCLPEEVAEINIDCTLPEAYMT 604

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-----HLQMTFESQDSETLQAI 544
             +I ++E   PYG  N   VF      +++I+++N       H++MT    +     A+
Sbjct: 605 PDIIKVVEFFEPYGEKNTPLVFLMEGAVIENIQIMNNKNGSVQHVKMTLAFGE-YKWPAL 663

Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
            +        +F     G  + +   L  NY+R  +  Q+ +LD  P 
Sbjct: 664 YWNAADRIGKDF---DVGTSVDIAFRLGRNYFRNQETLQITILDLKPS 708


>gi|15639691|ref|NP_219141.1| single-stranded-DNA-specific exonuclease (recJ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025929|ref|YP_001933701.1| single-stranded-DNA-specific exonuclease [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323008|gb|AAC65672.1| single-stranded-DNA-specific exonuclease (recJ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018504|gb|ACD71122.1| single-stranded-DNA-specific exonuclease [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060068|gb|ADD72803.1| single-stranded-DNA-specific exonuclease RecJ [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 706

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 148/357 (41%), Gaps = 12/357 (3%)

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYM 300
           L LVA++T+ D++ L G NR  V  GL         GL+ L      +   +    +G+ 
Sbjct: 357 LQLVAISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAIQRLMGKKLGTVEVGWS 416

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           I P INA GR+G  +    L +  ++ +  + A K+  LN+ R+ +  +     E     
Sbjct: 417 IVPLINATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARA 476

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
             +      + VV  D+ H G+ G+LA  L E    P   I    DG  +GS RS  G+ 
Sbjct: 477 SLETYSNR-LAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYH 535

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479
           +           +    GGHA AAG ++      +L    + +A  I           + 
Sbjct: 536 L--FSLLDPLADLFSDYGGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEF 593

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536
           D  L+A+ +   L+ +++   PYG GNP   F     K+ S  +       H+++T ++Q
Sbjct: 594 DAELDATQMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTLDAQ 653

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
             +   AI +        EF   + G  +     +  N ++G+   QL + D    E
Sbjct: 654 VHK-WPAIYWGAGEKLAQEF---AVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE 706



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 6/209 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLI 74
            RW +    EG  R   +T +++   + A +LV R V    A  F     +R L P P  
Sbjct: 2   KRWRAKALDEG--RVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYL-PGPFR 58

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
                 A  R+  A    EK++IFGD D DG ++  L+   L    +     +P    + 
Sbjct: 59  FHAMSAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEALCAFGLTVCWRVPV-ADEP 117

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG + + +++    G  LI+TVDCG ++   + YA ++GIDV+VIDHH      +P   +
Sbjct: 118 YGLSCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVLVIDHHAAPET-LPDAII 176

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           +N            L      + V+  + 
Sbjct: 177 INAKVPGAGYPHEFLSGCATAWKVVTALR 205


>gi|111115079|ref|YP_709697.1| single-stranded-DNA-specific exonuclease [Borrelia afzelii PKo]
 gi|216263975|ref|ZP_03435969.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia afzelii
           ACA-1]
 gi|110890353|gb|ABH01521.1| single-stranded-DNA-specific exonuclease [Borrelia afzelii PKo]
 gi|215980019|gb|EEC20841.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia afzelii
           ACA-1]
          Length = 706

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+ R +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKEINIQAQELNRIVKQYNINPFEATLLIKREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK  +RI +AI  +E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFIKRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH    +      ++
Sbjct: 120 GLSNELINMALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 146/378 (38%), Gaps = 18/378 (4%)

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
                   +   +  + Y I+ + NK      L   L  VA+ T+ D +P+I  NR  + 
Sbjct: 320 YFKYKEVEIKEKLYYIFYNIIFETNKNLFQKCLKR-LGFVAIGTIADNMPIINENRIILK 378

Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL     +    +  L++   I     IT+ ++ Y I P +N+ GR+ ++++    L++
Sbjct: 379 IGLKEIALRERMSINYLLKDAGILTKPNITSIDIAYKIAPILNSTGRLEKADIAINFLLT 438

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           +D  ++E    ++  +N+ R+  E             +    +    IV        GI 
Sbjct: 439 NDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 493

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
             +A RL   + + +  ++ +      GS RS    +   ++S      ++   GGH  A
Sbjct: 494 SRIATRLSVYYQKVAIFLTKQG-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAA 551

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPY 502
           AG T+            +     +            ID ++       +L   +E   PY
Sbjct: 552 AGFTLHENLLEDFIKELEYATTKVDYETTNENESILIDAIIPKDLTKDSLFKTIEIFEPY 611

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           G     P+    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L 
Sbjct: 612 GYEFKEPILMMENAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 668

Query: 559 QSRGKRMHVTGHLCVNYW 576
               + + +   +  +++
Sbjct: 669 IKEDQYLDIIFTVNEDFY 686


>gi|320535226|ref|ZP_08035351.1| single-stranded-DNA-specific exonuclease RecJ [Treponema phagedenis
           F0421]
 gi|320147917|gb|EFW39408.1| single-stranded-DNA-specific exonuclease RecJ [Treponema phagedenis
           F0421]
          Length = 709

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76
           W       G      +TQ +    + A +LV R + + +    +L    R    +P +  
Sbjct: 3   WN--KKDIGKELVKELTQNYGCDALTASILVRRGIINGEDILFYLENDPR-FFHNPFLFK 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           + + A  RI+ A    EK++IFGD DVDG  +  ++   L    ++A   +P    + YG
Sbjct: 60  NMEDAVDRILNAKDEGEKVLIFGDRDVDGITATTVLYEALIDMGLDAQWRVPS-GDETYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +  ++++F  +   LIITVDCG ++   + YA  +GID IV+DHH  +    PA  ++N
Sbjct: 119 LSNEVIDQFAEDYGTLIITVDCGISNMAEIAYAAEKGIDTIVVDHHTPQETLPPAAVIIN 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223
               D    Q  L      + + V + 
Sbjct: 179 HKIADCGYPQTDLSGCATAWKLAVALR 205



 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 12/354 (3%)

Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYM 300
           L LVAL+T+ D++ L G NR  V +GL         GLK L+ +  +    ++ +++G+ 
Sbjct: 358 LQLVALSTIADLMELQGENRIIVKQGLAAMSTNPREGLKELLAKQKLLGKKLSTDDIGWQ 417

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           + P INA GR+G+      L ++D +++    A  +  +N+ R+ + +   + AE     
Sbjct: 418 VSPLINATGRMGKPETAIELFLADTAEKRNEKANAIITMNEERKQLGAEGWDIAEPLARE 477

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
                     I V  D+ H GI G+L+ RL      P   I    DG  IGS RS  G+ 
Sbjct: 478 SLPRFSGNLAIAV-SDKIHRGITGILSNRLANTLQVPVIVICILPDGTAIGSCRSARGYH 536

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479
           +  ++       +    GGH  AAG ++ +     L   F+ +A  +       T    I
Sbjct: 537 LLALLE--PSADLFYDYGGHNFAAGFSLAKEQLPELLHAFELYAAAMEFSEDGETEELII 594

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536
           D  L    +   L+++ +   PYG  +P  +F   N K+ ++  +      HL++T    
Sbjct: 595 DAELPHEYLTPKLLELADLFEPYGEKSPKLLFTASNIKILNVSALGKTEKVHLKLTL-DC 653

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
            +    A+ +        +F   + G  +     +  N + G+   Q+ + D  
Sbjct: 654 GTYKWPALYWNAVEKLNVDF---AVGDSVDAVFTINRNSFNGTVTPQMIIQDMK 704


>gi|312880419|ref|ZP_07740219.1| phosphoesterase RecJ domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783710|gb|EFQ24108.1| phosphoesterase RecJ domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 565

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/571 (23%), Positives = 232/571 (40%), Gaps = 48/571 (8%)

Query: 33  ITQKHAIPDIVARVLVNR------NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86
           + ++  +   +  +L  R        + +    +L+P +  L+    +     KA   + 
Sbjct: 22  LARRLGLSPFLVGLL--RLQDPEFGSASEGLPGWLSPDLEGLLRALPLTPSERKARE-LF 78

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
           +A+    + +++GDYDVDG  S  L +  L     +   +IP R   GYG + S++    
Sbjct: 79  EALPPGGRAVVYGDYDVDGLTSTTLALELLLLRGASVRYFIPHRFNQGYGFHESVVRTIA 138

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG- 205
           + G  L++ VDCG+   +A++ A   GI V + DHHQ          LVNP+     S  
Sbjct: 139 SRGCDLLVVVDCGTKDLEAVREARRAGIPVAIFDHHQAGEVLPEDAVLVNPHAEPASSPA 198

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYV 264
              LCAAGV++          R+         L   LDLV LAT+ D V L   LNR+ V
Sbjct: 199 ARQLCAAGVLWAWASRTEAAPRE--------WLEERLDLVCLATLADCVSLKNPLNRSLV 250

Query: 265 VKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            +GL V R     GL+ L+E++++    +  E+L   + P +NA GR+  +    RLL  
Sbjct: 251 RRGLQVLRSAPRRGLRLLLEKLDLQAPKVDEEDLTMKVIPCLNAAGRLDLAEQAVRLLHP 310

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
            D    + L   L  LNQ RR +   +   A                 V +G+ W  G++
Sbjct: 311 GDEPL-DPLVRNLVDLNQKRRFLSGQVHRDARG----------DGDHHVHQGNDWPVGVL 359

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
             +A+RL  + GRP   ++     +  G+ R  EG     +         L   GGH  A
Sbjct: 360 SSVASRLCSERGRPVALVAPTGT-QLRGTLRMPEGGGGDAVAVLQELSSDLAAWGGHRQA 418

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
           AG  VE   +G++    ++   ++    + +    +       A+        E   P+G
Sbjct: 419 AGFAVEPGLWGKVRPRLEQLLRDVP---LLSEPLHVLAW-PLEALTPEAWAEAEVLRPFG 474

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563
            GNP+P+F      + S++ +              +  + +  R       E  +  R  
Sbjct: 475 MGNPSPLFLDAGGAIPSVQPLGKT----------GKVFKVLLGRCELVAFDEERLLERVI 524

Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594
                       WRG ++ +L +     V+G
Sbjct: 525 PQGWIYRPRQEVWRGRRQLRLYLE--RIVQG 553


>gi|15894481|ref|NP_347830.1| single-stranded-DNA-specific exonuclease (recJ) [Clostridium
           acetobutylicum ATCC 824]
 gi|15024120|gb|AAK79170.1|AE007633_14 Single-stranded-DNA-specific exonuclease (recJ) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508612|gb|ADZ20248.1| Single-stranded-DNA-specific exonuclease [Clostridium
           acetobutylicum EA 2018]
          Length = 548

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 118/590 (20%), Positives = 228/590 (38%), Gaps = 67/590 (11%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
            +WV+L  +                     +L NR +     K FLNP     +P    L
Sbjct: 3   KQWVNLNKKPTDLSIEN-------------ILRNRGIK--NLKHFLNPLPSDFIPL-SKL 46

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
               +AA  I++ I  ++K  IF D D+DG A+  +M ++L + + N +  I   I   +
Sbjct: 47  KRIFEAAEIIIKGIKENKKFTIFYDCDLDGTAAGTIMRKYLLNFTPNVD--IAYSIGKEH 104

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +   ++  I     L I VD  + ++    Y    G++VI+ DHH   + +     +V
Sbjct: 105 GLSSINLDNIIQNTDIL-IAVDSSTGNHKEQDYLKQNGVEVIIYDHHDEPNNQ--NVCIV 161

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV- 254
           N    D       L  AGVV+   + I  +++           L+ +DL A   + DV+ 
Sbjct: 162 NSQFED--YPNKQLSGAGVVWKGCLAIDSLMK-------TKYALNYVDLAAAGILADVMD 212

Query: 255 --PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
                  NR  +  G       G       ++    +    + ++ + + P +NA  R+ 
Sbjct: 213 VGESYMENRLIITMGFKHLVNVG-------LKTAIGTYDFNSTSILFSVAPLVNAAIRMR 265

Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           E+ +    L  ++ ++ + L  KL  + + +  +    +   E ++     + ++ S   
Sbjct: 266 ENKIAIDFLFEEEKKQSKKLLKKLKEIKEKQNKLVDISMINLEFQMKQNNSENKKVSFGF 325

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED--GKGIGSGRSIEGFDIGKMVSFAVE 430
           VE    + GI G++A ++  KF +P+  +S+           G      D   +V     
Sbjct: 326 VE----NKGIAGVIATKVCSKFDKPAIVLSYPNPAKDFDKYIGSLRSNIDFKTIV----N 377

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
              L K  GH  AAG+ +++ N  +L D         +       V K D ++ A  + +
Sbjct: 378 NTKLAKSQGHERAAGIEIKKENLEKLLDT----LEQKLKNKEFKKVDKFDLLIKAEFLTL 433

Query: 491 ALIDMLES---AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547
            LI  +E        G           N       ++   H++  F       ++ + + 
Sbjct: 434 NLIKQIEKINRLT--GKNFQPINVVLENVVPVDFTIMIKKHIKFNFRD-----IEFVYWN 486

Query: 548 VYGTPLGEFLMQSRG--KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
                + +F     G  + + V G   V+Y+RG ++ Q+ + D   V+ +
Sbjct: 487 SID-KIQDFKTTCSGLYRSLSVMGIPQVSYFRGREKKQIMIQDYKDVKDN 535


>gi|225620519|ref|YP_002721776.1| single-stranded-D-specific exonuclease RecJ [Brachyspira
           hyodysenteriae WA1]
 gi|225215338|gb|ACN84072.1| single-stranded-D-specific exonuclease RecJ [Brachyspira
           hyodysenteriae WA1]
          Length = 719

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 171/376 (45%), Gaps = 13/376 (3%)

Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
            ++ + I+R L   ++  L   +     LV   +V DVVPLI  NRAYV   L    +  
Sbjct: 348 LIIKMEIFRRLFYISQKQLQSYIKKKSILVLFGSVADVVPLIEENRAYVKCALKELEKPS 407

Query: 276 NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
           +     ++ER+N+ ++ I  + + + + P INA GR+G      +LL  +  +E   L+ 
Sbjct: 408 HIRYNIILERINLLNTKIDTQAISWRLAPFINAAGRMGSPETALKLLTCEIKEEAVTLSN 467

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           ++  +N+ R+ +  +        + T      +  +IVV+  +   G+ GL+A ++  ++
Sbjct: 468 EVYNMNETRKSLTESNFSIVNEYIKTNG--CLEFPIIVVKSKKIEQGLTGLIAGKVLSEY 525

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
           G+ +  +   EDG  IGS RS    +   M+ +A     L K GGH  AAG T+   NF 
Sbjct: 526 GKTAVIMHESEDGICIGSIRSRGDDNARDMLEYANIY--LTKFGGHKNAAGFTLNTDNFD 583

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
           +      K+A +             D  ++   ++I    +LE   PYG GN  P+F   
Sbjct: 584 KFQSKIIKYASSQNFQTEKKDDV-FDLEISFKDIDIKFARLLEMFEPYGFGNEEPLFMSK 642

Query: 515 NHKLQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571
           N K+ SI  +      HL++    QD++ + AI +        + L  +    + +   L
Sbjct: 643 NVKVNSINKMKKNNKTHLRLEL-LQDNKKVNAIMWDKSDEEAQKLLSSN---YIDIIYKL 698

Query: 572 CVNYWRGSKRCQLRVL 587
            VN + GS+  ++ V 
Sbjct: 699 KVNRFNGSEDARIYVE 714



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 3/186 (1%)

Query: 38  AIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            +   +  +L  R ++  +   DF    I  L  +P  + D +    R+ +AI N EKI+
Sbjct: 5   NLNTTILELLKLRGITSKEDIYDFFFQDIYSL-SNPFNIRDINVFVDRVKEAIDNDEKIL 63

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           ++GD D DG  + +++   L   + N   ++P+    GYG + +++E++ N G  LIITV
Sbjct: 64  VYGDKDADGITAASIIYNTLKVVTKNVEAFVPN-HTTGYGLSKAVIEEYANSGVSLIITV 122

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           DCG ++ + +++A +  ID+IV DHH +      AYA+ NP   +      +     V F
Sbjct: 123 DCGISNAEEVEFARDLSIDIIVTDHHDIPEILPNAYAVFNPKISNTGFVSKNFSGCAVAF 182

Query: 217 LVLVLI 222
            ++   
Sbjct: 183 KLMQAF 188


>gi|224534230|ref|ZP_03674808.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia spielmanii
           A14S]
 gi|224514332|gb|EEF84648.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia spielmanii
           A14S]
          Length = 708

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W         +    I +++ +    A +L+ R +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKELNIQAHELNRIVKQYNVNPFEATLLLKREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +K   RI +AI  +E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNINKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH    +      ++
Sbjct: 120 GLSTELINIALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGEDFKTESIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 163/431 (37%), Gaps = 18/431 (4%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +         L     + I++  ID  +  +++ P +       L   +        
Sbjct: 269 YIIIFNKEDQNQLLNKHFARNININTIDISENFTKKYPNFRKKTLKDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y I+ + NK  L   L   L+ VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNIIFETNKNLLQKCLKR-LNFVAIGTIADNMPIINENRIILKAGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++   I     IT+ ++ Y I P +N+ GR+ ++N+    L++ D  ++E
Sbjct: 388 LRERMSINYLLKDAGILTKPNITSIDIAYKIAPILNSTGRLEKANIAINFLLTSDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
               ++  +N+ R+  E             +    +    IV        GI   +A RL
Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGISSRIATRL 502

Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
              + + +  ++ +      GS RS    +   ++S      ++   GGH  AAG T+  
Sbjct: 503 SVYYQKVAIFLTKQG-NIIKGSIRSNNKINSKTLISIVPSHLVI-NSGGHKAAAGFTLHE 560

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
                     +     +            ID ++       +L   +E   PYG      
Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESILIDAIIPKDLTKDSLFKTIEIFEPYGYEFKEL 620

Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           V    N  LQ +++++      H+ M  +SQ+ +  +AI F   GT   E L     + +
Sbjct: 621 VLMMKNVFLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELNIKEDQYL 677

Query: 566 HVTGHLCVNYW 576
            +   +  +++
Sbjct: 678 DIIFTVNEDFY 688


>gi|4102237|gb|AAD09318.1| p55-L5 [Borrelia burgdorferi N40]
          Length = 476

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W              I +++ I    A +L+NR +  +    FL  S+  L+ +P +L
Sbjct: 2   KIWKQKETNIQTQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI N+E I+IFGD D DG  +  +M   L    +N +  IP      Y
Sbjct: 61  KNIDKFINRINKAIKNNENILIFGDKDADGIXATIIMYETLKDFGLNVSYXIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  L+   + +   LIITVD G +S + + YA ++GI++I+ DHH           ++
Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           NP+  DD      +    V F   + +
Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206



 Score = 57.5 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 3/202 (1%)

Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
            I +       + L     + I++  ID  +   ++ P +       L   +        
Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328

Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
            +   +  + Y ++ + NK  L   L   L  VA+ T+ D +P+I  NR  +  GL    
Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387

Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L+++D  ++E
Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447

Query: 331 MLAMKLDVLNQNRRLMESAMLE 352
               ++  +N+ R+  E     
Sbjct: 448 NKFKEIKEINELRKYKEEKAWN 469


>gi|269468992|gb|EEZ80563.1| single-stranded DNA-specific exonuclease [uncultured SUP05 cluster
           bacterium]
          Length = 267

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 15/279 (5%)

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           +++DD  +    A +L+  NQ R+  ++ + ++A+A V  Q    +    + +    WH 
Sbjct: 1   MLTDDINDARRYAKELEEFNQKRKQEQTRIQDEAQAIVDAQDV-TEGKFALSLFDPSWHE 59

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438
           GIVG++A +LKE +  P    +   D    GS RSI    I  ++        G+++K G
Sbjct: 60  GIVGIVAGKLKEDYHCPVAVFAKSGD-FLKGSIRSIPSVHIKDLLDLVDRHNPGLILKFG 118

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGL+++  +F      F       +   +       DG L A  +++   ++++ 
Sbjct: 119 GHAMAAGLSIKAEDFYSFKRVFHDAIKAHLNGEMPKMELLTDGKLEAFDISLNNAEIIKE 178

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFL 557
           AGP+G G   P+F     ++   +VV   HL+   +   +++   AIAF         F 
Sbjct: 179 AGPWGQGFEEPIFYGE-FEIVEQKVVGEKHLKCRLKLVGNNQVHDAIAF---------FQ 228

Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596
                K+  V   L +N WRG+   QL V   + +  +H
Sbjct: 229 DPLDTKKATVVYKLSLNIWRGNISLQLMVEQITSLTQNH 267


>gi|323650983|ref|YP_004243626.1| putative single-stranded-DNA-specific exonuclease [Bacillus
           subtilis subsp. natto]
 gi|323461623|dbj|BAJ77039.1| putative single-stranded-DNA-specific exonuclease [Bacillus
           subtilis subsp. natto]
          Length = 583

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 120/601 (19%), Positives = 238/601 (39%), Gaps = 65/601 (10%)

Query: 29  RALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           +   I+  +   DI+  +L NRN+       FLNP+    + +P  L + +  A  ++  
Sbjct: 2   KIKQISSYNG--DIIDTILKNRNIK--DIDTFLNPNSSEDL-NPFDLHNIELGANVLLAH 56

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDRIVDGYGPNPSLMEKFI 146
           +  ++ I I  D D DG +S +++ +++     +   + ++ DR    +G    + +K  
Sbjct: 57  LLINDHIGILVDADADGFSSASIIYQYIKKIEPDSHVSYFLHDR--KAHGLTDEISQKIA 114

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
           +    LII  D  S   D LQ     GID+IV+DHH+V         L+N    ++ S  
Sbjct: 115 DSSIDLIIIPDAASNDVDELQRLYYMGIDIIVLDHHEVDKMPTHG-ILINNQLDENKSTN 173

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN-RAYVV 265
            +L  AG+ +     + RIL              LLDLVA+  + D   +     R  V 
Sbjct: 174 KNLVGAGMAYKFCQALDRIL-------DTHYADDLLDLVAIGQIGDTSDISENEVRNLVF 226

Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS-- 323
           +GL            A+++       I  ++L + I P INA  R+G  +    L  +  
Sbjct: 227 RGLETINNP--LVKVAVMDVFGSLEGIAPKDLSFSIIPMINAVVRVGTEDEKDLLFRALN 284

Query: 324 ----------------------DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
                                 D     + L      + +  +  +++M++++  K+ + 
Sbjct: 285 KIGDGRVWNVEKRKKNKKTGKFDKILVEQDLYEYAFDMMKKVKGRQNSMIKKSLEKLRSS 344

Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421
             +    S+ +++       I GL+A ++ +K+ +P+  + +++  K IGSGR  E   +
Sbjct: 345 TYNEGGISIALLDSSDE-AAITGLVANKVAKKYQKPALVLYYKDK-KYIGSGRGDEKV-L 401

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481
             +  +  E G++    GHA A G+++   NF        +             V+++D 
Sbjct: 402 SSLKDWCNETGLVEFAQGHANAFGISIPEDNFEEFKKRTHEV-------EQNEFVYEVDL 454

Query: 482 VLNASAVNIALIDML---ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538
           ++    V+ +LI+ +   +    +G     P+ AF   K+ +   +      +TF     
Sbjct: 455 IVK-ENVDRSLIEDVTDNKHL--FGGKVQEPLLAFVGIKI-NKNFIRQKGSMLTFYENG- 509

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
             ++ + +                +  M   G   VN +   +  QL ++D    E   +
Sbjct: 510 --VEFVMYGAPEGLYESLKNNFDRQITMDFVGTPSVNVYGNKRTLQLVLVDCERNESGQY 567

Query: 598 A 598
            
Sbjct: 568 D 568


>gi|302338649|ref|YP_003803855.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635834|gb|ADK81261.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta
           smaragdinae DSM 11293]
          Length = 706

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 166/356 (46%), Gaps = 12/356 (3%)

Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENL 297
            S+LDLVAL T+ D++PL   NR  V +G+ +       G++ L+ R N+    ++  ++
Sbjct: 355 ESILDLVALGTLADMMPLEDENRILVKRGMKLLSEARRGGIQELLVRQNLLGKRLSTTDV 414

Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
           G+ I P INA GR+G     + LL+  D+ +   LA ++  LN+ R+ +  +  +     
Sbjct: 415 GWQISPIINATGRLGVPEKAADLLLETDAMKRAALADEVVSLNRKRKKLGESAWKTVVPL 474

Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417
                    +  + +VE   +H GI G+LA+RL + FG PS  I+  +    +GS RS++
Sbjct: 475 AKKSLTQYGERFI-LVEDKSFHRGITGILASRLVQSFGVPSAVIAHLDTHL-VGSIRSVK 532

Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477
           G +    +       +L+  GGH +AAG ++   NF      F +    +          
Sbjct: 533 GINAKTFLES--FSDLLLDFGGHDLAAGFSLTFENFPSFLQRFAEMVERMEVPQNEEEAI 590

Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL---AHLQMTFE 534
           +ID  L  S +   L D++E   PYG  +P  VF     +L  I ++      HL++   
Sbjct: 591 QIDAELPPSYMKPELCDIVERFEPYGEKSPPLVFMAKRVRLAEISLIGKPDPIHLKL-LV 649

Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              S    A+ +R       +F    +G ++ +   L  NY++  ++ QL +LD  
Sbjct: 650 DSGSFKWPAVFWRSADRVGVDF---QQGDQVDILFRLGRNYFQNREQPQLTILDVR 702



 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 3/205 (1%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77
           +             +++++ I  ++A ++  R V S D  K  +   +     +P +  +
Sbjct: 2   IWKKSDIDPEVVRDLSRQYGIDLLIASIMARRGVLSPDDVKFHIEEELS-FTHNPFLFDE 60

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +   R+  A+   EK+ IFGD DVDG  S  LM + L    +  +  +P +  D YG 
Sbjct: 61  MTEVVDRLFLALDEGEKLRIFGDRDVDGITSTVLMKQQLEGMGLEVSWSLP-KGDDPYGL 119

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
              L++        L+ITVDCG ++Y  + YA  +GID ++IDHH    E   A A++NP
Sbjct: 120 TMELIDLMERNEETLLITVDCGISNYREIAYAREKGIDTLIIDHHNPSDELPCALAIINP 179

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLI 222
              D       L A GVV  V+  +
Sbjct: 180 KIADCGYPFSGLAAVGVVSKVIWAL 204


>gi|255019534|ref|ZP_05291626.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus
           caldus ATCC 51756]
 gi|254971032|gb|EET28502.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus
           caldus ATCC 51756]
          Length = 278

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 128/275 (46%), Gaps = 12/275 (4%)

Query: 19  VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78
              L Q       A+T    I  ++AR+   R V+       L+  +  L      L D 
Sbjct: 2   RIQLRQAEHEPVTALTSA-GIDPVLARIYSARGVAGPDD---LDLGLAGLASY-TQLKDI 56

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137
           D+AA+R+  AI N+EK+ I GD+D DGAA  +L++  +        +++IP+R+  GYG 
Sbjct: 57  DQAAKRLAIAIKNAEKLAIAGDFDSDGAAGASLLIEGILDLGGRLPSLFIPNRMTQGYGL 116

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-EIPAYALVN 196
           +P L+ +       L+ITVD G  S   +  A  +G DVI+ DHH           A+VN
Sbjct: 117 SPGLVAEMPA-DTNLVITVDNGIASIAGVAAARARGFDVIITDHHLAGERLPEDCAAIVN 175

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDV 253
           PN+             GV F ++      LR+D          +L   LDLVALAT+ DV
Sbjct: 176 PNQPGCAFPWKGTAGVGVAFYLIAATRAKLREDEWFGDHRPEPNLSKYLDLVALATIADV 235

Query: 254 VPLIGLNRAYVVKGLMV-ARRQGNPGLKALIERVN 287
            P    NR ++  GL    +R+   G+ AL+E   
Sbjct: 236 APFERNNRIFIAAGLERIRQRRCRIGILALLEVAG 270


>gi|167933078|ref|ZP_02520165.1| hypothetical protein cdivTM7_00529 [candidate division TM7
           single-cell isolate TM7b]
          Length = 361

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/319 (36%), Positives = 174/319 (54%), Gaps = 10/319 (3%)

Query: 104 DGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           DG ++ AL++         +   +IP+R V+GYG     ++K  +  A LIITVDCGS  
Sbjct: 1   DGISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIITVDCGSLC 60

Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222
           ++ + YA + GID +V DHH V     PA A VNP     L     L   GV F ++  +
Sbjct: 61  HNEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVAFKLVQAL 120

Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
            + L    +    +    LLDLVAL TVCD+V L G NRA V  G+ V ++Q   GLKAL
Sbjct: 121 QKELDGLPEGYEKW----LLDLVALGTVCDIVKLTGENRANVYWGIEVMKKQRRTGLKAL 176

Query: 283 IERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
           +   NI    I+A+ LG++ GP INA GR+  ++L   +LIS +  +    A  +D LN 
Sbjct: 177 MAVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGDDALNKANYIDNLNS 236

Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401
           +RR M+  + ++A         D +   V+V+ G  W+ GI+G++AA++ EKF +P + +
Sbjct: 237 HRRQMQDDIFKEA----CKIALDYKDDDVLVINGKNWNHGIIGIVAAKILEKFKKPVYIL 292

Query: 402 SFEEDGKGIGSGRSIEGFD 420
           +  ++G+  GS RS   F 
Sbjct: 293 AENDNGETKGSARSFGDFS 311


>gi|158834157|gb|ABW81883.1| 5'-3' exonuclease [Candidatus Regiella insecticola]
          Length = 281

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 144/281 (51%), Gaps = 8/281 (2%)

Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           A S AL +  L      +    +P+R  +GYG +P ++E+   + A LI+TVD G +S+ 
Sbjct: 1   ATSTALAVLALRSMGAKDVKYLVPNRFEEGYGLSPMIVERVARQNAALIVTVDNGISSHA 60

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
            ++ A  +GI V+V DHH        A A++NPN          L   GV F +++ +  
Sbjct: 61  GVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLMLALRA 120

Query: 225 ILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQGNPGL 279
            L+ +           +L  LLDLVAL TV DVVPL   NR  V +GL  +  ++  PG+
Sbjct: 121 RLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILVHQGLSRIRAKRCRPGI 180

Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           +AL++        + A +LG+ +GP +NA GR+ + ++G  LL+SDD     +LA +L+ 
Sbjct: 181 QALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILAEELNT 240

Query: 339 LNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRW 378
           LNQ RR +E  M  +A A     +  D      I +   +W
Sbjct: 241 LNQERREIEQGMQLEALALCNALEDPDHILPYGIAMYHKKW 281


>gi|203284175|ref|YP_002221915.1| single-stranded-DNA-specific exonuclease [Borrelia duttonii Ly]
 gi|201083618|gb|ACH93209.1| single-stranded-DNA-specific exonuclease [Borrelia duttonii Ly]
          Length = 718

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 9/279 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W            + I +K+ I    A +L++R +  +    FL  S+  LM +P  L
Sbjct: 16  KIWKKKEIDIAEKNIVNIKKKYNISLFEATLLLSREIKEEDFLFFLESSV-NLMHNPFFL 74

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   RI +AI   E ++IFGD D DG  +  +M   L    +N    IP      Y
Sbjct: 75  KNIDKFIYRINEAILEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF-Y 133

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G    +++K  N+   LIITVDCG ++ + + YA ++ I+VI+ DHH    E      ++
Sbjct: 134 GLTKEVIDKAFNDKITLIITVDCGISNIEEINYARSKNIEVIITDHHLPNKEIDTENIII 193

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIY----RILRQDNKVPLNFDLLSLLDLVALATVC 251
           +P+   DL     +    V F   + +Y        +D          + + L A+    
Sbjct: 194 DPHLKGDLYPFKEIAGCYVSFKACLALYLSTTNFYNKDLIFMFLEKFENNIKLHAIEINN 253

Query: 252 ---DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287
                   +  N    +    +     N  +    +   
Sbjct: 254 YILKKHITLDNNNDLQININQIEEFSQNKHIIVFNKIEQ 292



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 159/379 (41%), Gaps = 18/379 (4%)

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
            +  + Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  V +GL     + N
Sbjct: 347 KLYYMFYNIIFETNKNLLQNCLKR-LKFVAIGTIADNMPIIDENRIAVKEGLKEIALREN 405

Query: 277 PGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             +  L++ VNI     IT+ ++ + I P +N+ GR+ ++++  R L+S D+ ++E    
Sbjct: 406 ISINYLLKEVNILTKPIITSTDIAFKIAPILNSTGRLEKADITIRFLLSQDTNKIENKFK 465

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           ++  +N  R+  E             +    +    IV        GI   +A RL   +
Sbjct: 466 EIKNINTLRKYKED-----ISWNTHNENTIFKNDKFIVCYDKNTPKGISSRMATRLSSYY 520

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
            + +  ++ + D    GS RS    +  +++S  + + +++  GGH  AAG T+      
Sbjct: 521 KKVAVFLTKQSD-IIKGSIRSNNKVNSKELISM-IPKHLIINSGGHKAAAGFTLYENVLN 578

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
                 +     I    +      ID ++        LI  ++   PYG      +    
Sbjct: 579 EFIRELENALKKIEYKELQEDSILIDAIIPQDLSKTELIKTIDLFEPYGHDFREFILMME 638

Query: 515 NHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           N  +Q IR ++      H+ M   + + +  +AI F   GT   + L    G+ + +   
Sbjct: 639 NVCIQDIRTIDKNGTSKHISMKIIN-NIDYYKAIYFN--GTQTIQELGIKDGQNIDIIFT 695

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  + +  + +  L+++D 
Sbjct: 696 ISEDIYNQNDKI-LKIIDI 713


>gi|187918128|ref|YP_001883691.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia hermsii
           DAH]
 gi|119860976|gb|AAX16771.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia hermsii
           DAH]
          Length = 704

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 128/339 (37%), Gaps = 10/339 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W            + I +K+ I  + A +L+ R +  +    F+  S+  LM +P +L
Sbjct: 2   KIWKKKEIDIPKENVVNIAKKYNISLLEATLLLRREIKEEDFLFFIESSV-NLMHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + DK   R+ +AI   E ++IFGD D DG  +  +M   L    +N    IP      Y
Sbjct: 61  KNIDKFTYRMNEAIAEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G    +++K   +   +IITVDCG ++ +   YA ++ I+VI+ DHH    E      ++
Sbjct: 120 GLTKEIIDKAFEDKISIIITVDCGISNIEEANYARSKNIEVIITDHHLPNKEIDIENIII 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P+   D S    +    V F   + +Y      +   L    +  L L  L     +  
Sbjct: 180 DPHLKGDPSPFKEIAGCYVSFKACLALY-----LSTTNLYNKNMVFLFLERLNNNITLHA 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSINAGGRIGE 313
           +   N  +     + +       +  L E       I         ++    N    I  
Sbjct: 235 IEINNYMFKKYIALESNNDLQININKLEEFSKSKYVIVFNKNEQNQLLNEFFNYKIDIET 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352
            ++    +     +  +    +L  + +  +  ++   E
Sbjct: 295 IDISENFV-KKYPKFAKKTLKELMQITKYCKYRKTDTKE 332



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 192/482 (39%), Gaps = 26/482 (5%)

Query: 111 LMMRFLSHCSVNANMY---IPDRIVDGYGPNPSLMEKFIN------EGAQLIITVDCGST 161
           ++  FL   + N  ++   I + +   Y    S  +  IN            + V   + 
Sbjct: 218 MVFLFLERLNNNITLHAIEINNYMFKKYIALESNNDLQININKLEEFSKSKYVIVFNKNE 277

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
               L    N  ID+  ID  +   ++ P +A      L  ++             +  +
Sbjct: 278 QNQLLNEFFNYKIDIETIDISENFVKKYPKFAKKTLKELMQITKYCKYRKTDTKEKLYYV 337

Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281
            Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  V +GL     + N  +  
Sbjct: 338 FYNIIFEVNKDLLKNCLKR-LKFVAIGTIADNMPIINENRIVVKEGLKEIALRENISINY 396

Query: 282 LIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339
           L++ VNI     IT+ ++ + + P +N+ GR+ ++++  + L+++D+ ++E    ++  +
Sbjct: 397 LLKEVNILTKPIITSTDIAFKVAPILNSTGRLEKADITIQFLLAEDTNQIENKFKEIKNI 456

Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
           N  R+  E      A      +    +    IV    +   GI   +A RL   + + + 
Sbjct: 457 NTLRKRKEE-----ASWIAHDENTIFKNDKFIVCYDKQTPKGISSRMATRLSAYYQKVAV 511

Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
            ++ +E     GS RS    +  +++S  +   +++  GGH  AAG T+           
Sbjct: 512 FLTKQE-NIIKGSIRSNNKVNSKELISM-IPSHLIINSGGHKAAAGFTLYEAVLNEFIKE 569

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
            +     I    I      ID ++        L+ +++   PYG G    +    +  +Q
Sbjct: 570 LENALDKIEYKEIHEDSILIDAIIPKDFNKRELLKIIDLFEPYGHGFREFILMMEDIYIQ 629

Query: 520 SIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
            +R ++      H+ M  ++ + +  +AI F   GT   + L    G+ + +   +  + 
Sbjct: 630 DLRTIDKNGTSKHISMKIKN-NKDYYRAIYFN--GTQKIQELGIKDGQNIDIIFTVGEDL 686

Query: 576 WR 577
           + 
Sbjct: 687 YN 688


>gi|158834159|gb|ABW81884.1| 5'-3' exonuclease [Candidatus Regiella insecticola]
          Length = 269

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 7/262 (2%)

Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           A S AL +  L      +    +P+R  +GYG +P ++E+   + A LI+TVD G +S+ 
Sbjct: 1   ATSTALAVLALRSMGAKDVKYLVPNRFEEGYGLSPMIVERVARQNAALIVTVDNGISSHA 60

Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
            ++ A  +GI V+V DHH        A A++NPN          L   GV F +++ +  
Sbjct: 61  GVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLMLALRA 120

Query: 225 ILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQGNPGL 279
            L+ +           +L  LLDLVAL TV DVVPL   NR  V +GL  +  ++  PG+
Sbjct: 121 RLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILVHQGLSRIRAKRCRPGI 180

Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           +AL++        + A +LG+ +GP +NA GR+ + ++G  LL+SDD     +LA +L+ 
Sbjct: 181 QALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILAEELNT 240

Query: 339 LNQNRRLMESAMLEQAEAKVLT 360
           LNQ RR +E  M   A A    
Sbjct: 241 LNQERREIEQGMQXXALALCNA 262


>gi|203287711|ref|YP_002222726.1| single-stranded-DNA-specific exonuclease [Borrelia recurrentis A1]
 gi|201084931|gb|ACH94505.1| single-stranded-DNA-specific exonuclease [Borrelia recurrentis A1]
          Length = 719

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 10/280 (3%)

Query: 16  FRWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74
             W             + I +K+ I    AR+L++R +  +    FL  S+  LM +P  
Sbjct: 16  KIWKKKKEIDIAEENIVNIKKKYNISLFEARLLLSREIKEEDFLFFLESSV-NLMHNPFF 74

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L + DK   RI +AI   E ++IFGD D DG  +  +M   L    +N    IP      
Sbjct: 75  LKNIDKFIYRINEAILEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF- 133

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           YG    +++K  ++   LIITVDCG ++ + + YA ++ I+VI+ DHH    E      +
Sbjct: 134 YGLTKEVIDKAFDDKITLIITVDCGISNIEEINYARSKNIEVIITDHHLPNKEIDTENII 193

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIY----RILRQDNKVPLNFDLLSLLDLVALATV 250
           ++P+   DL     +    V F   + +Y        +D          + + L A+   
Sbjct: 194 IDPHLKGDLYPFKEIAGCYVSFKACLALYLSTTNFYNKDLIFMFLEKFENNIKLHAIEIN 253

Query: 251 C---DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287
                    +  N    +    +     N  +    +   
Sbjct: 254 NYILKKHITLDNNNDLQININQIEEFSQNKHIIVFNKIEQ 293



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 159/379 (41%), Gaps = 18/379 (4%)

Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
            +  + Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  V +GL     + N
Sbjct: 348 KLYYMFYNIIFETNKNLLQNCLKR-LKFVAIGTIADNMPIIDENRIAVKEGLKEIALREN 406

Query: 277 PGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
             +  L++ VNI     IT+ ++ + I P +N+ GR+ ++++  R L+S D+ ++E    
Sbjct: 407 ISINYLLKEVNILTKPIITSTDIAFKIAPILNSTGRLEKADITIRFLLSQDTNKIENKFK 466

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
           ++  +N  R+  E             +    +    IV        GI   +A RL   +
Sbjct: 467 EIKNINTLRKYKED-----ISWNTHNENTIFKNDKFIVCYDKNTPKGISSRMATRLSSYY 521

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
            + +  ++ + D    GS RS    +  +++S  + + +++  GGH  AAG T+      
Sbjct: 522 KKVAVFLTKQSD-IIKGSIRSNNKVNSKELISM-IPKHLIINSGGHKAAAGFTLYENVLN 579

Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514
                 +     I    +      ID ++        LI  ++   PYG      +    
Sbjct: 580 EFIRELENALKKIEYKELQEDSILIDAIIPQDLSKTELIKTIDLFEPYGHDFREFILMME 639

Query: 515 NHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           N  +Q IR ++      H+ M   + + +  +AI F   GT   + L    G+ + +   
Sbjct: 640 NVCIQDIRTIDKNGTSKHISMKIIN-NIDYYKAIYFN--GTQTIQELGIKDGQNIDIIFT 696

Query: 571 LCVNYWRGSKRCQLRVLDA 589
           +  + +  + +  L+++D 
Sbjct: 697 ISEDIYNQNDKI-LKIIDI 714


>gi|330836367|ref|YP_004411008.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta
           coccoides DSM 17374]
 gi|329748270|gb|AEC01626.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta
           coccoides DSM 17374]
          Length = 708

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 129/550 (23%), Positives = 224/550 (40%), Gaps = 35/550 (6%)

Query: 57  AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY-------NSEKIMIFGDYDVDGAASV 109
           A   +NP +         L  C  AA+ I  A+          E I++      D     
Sbjct: 173 AMAIINPKLEGSGYPFSHLAGCGVAAKCIW-ALRFSYTDFFREECILLHAQPGND----- 226

Query: 110 ALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYA 169
            +++R L   ++  +  I + +V G    P          A + I V         L+ A
Sbjct: 227 TVIIRALRLRNMIVDDRISEEVVPGM-LPPEKSRLLQFLSAGVPILVLDEEEETSQLRKA 285

Query: 170 TNQGIDVIVIDHHQV-----KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224
             +G+D+  +   Q            +   +         G         ++++ +    
Sbjct: 286 FGRGVDIHCVSMRQEMEKVLPQIRGKSIFALTSISRGARYGLLGRDELDALYMLFMAFVM 345

Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284
                 +  L+ D  SLLDLVA+ T+ D++P+I  NR  V +GL V +      L+ L+ 
Sbjct: 346 H----KEPLLSEDYDSLLDLVAIGTIADLMPMIDENRILVRRGLSVLKSSRRKALQPLMA 401

Query: 285 RVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
             N I   ++  ++ + + P INA GR+GE ++   +L+S D+ E E LA +L  LN+ R
Sbjct: 402 MQNLIGRSLSTTDISWNLTPLINAAGRMGEPSIAVEMLLSKDAHESERLAGELVQLNKKR 461

Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403
           + M   +  + E K      +      ++VE      G+ G++A+RL  +F  PS  I+ 
Sbjct: 462 QKMGEDVWVRLEPKAKA-SKESHGGKFLMVEDPSISRGLTGIMASRLLRQFSIPSLVIAK 520

Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
            +D +  GS RS + F +      +  E + +  GGHA A G ++E  N     D     
Sbjct: 521 TDDHRVTGSMRSPDDFHVRDF--LSQFEDLFLDYGGHARAGGFSMETDNLSGFKDRLMDV 578

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
              +          +ID  L A  +   ++ ++E   PYG  NP   F      +  I  
Sbjct: 579 VERMDGVDEHGESIRIDCSLPARFMTPDIMKVVEFFEPYGEQNPPIHFMIEGAIISDISS 638

Query: 524 VNLA----HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
           +N      HL+++     S T  A+ ++       EF +   G  ++V   L  NY+R +
Sbjct: 639 MNNRQGSDHLRLSVSY-GSHTWPAVYWQAADKLDREFSL---GDSVNVVFRLGRNYFRNT 694

Query: 580 KRCQLRVLDA 589
           +  QL V+D 
Sbjct: 695 EIVQLTVMDI 704



 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 18  WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76
           W     +        + ++  +  I A +L  R +      K FL   +   + +P    
Sbjct: 3   WE--KKRVSTETVGKLHERLGLDVITASILARRGIEEVQDVKFFLENEL-TFLHNPFHFD 59

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D +    R+ QA+ + EK+ IFGD DVDG     L+ +      ++A+  +P+   + YG
Sbjct: 60  DMEVFVERMQQAVEDKEKVRIFGDRDVDGITGTVLLHQEFERLGLDASYKLPE-GDEPYG 118

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
              + ++    +G  L++TVDCG ++ D + YA+  G+D +V+DHH       PA A++N
Sbjct: 119 LTMAGVDAAHADGVTLLVTVDCGISNNDEIAYASTLGLDTLVLDHHLGGDVLPPAMAIIN 178

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           P          HL   GV    +  + 
Sbjct: 179 PKLEGSGYPFSHLAGCGVAAKCIWALR 205


>gi|330874871|gb|EGH09020.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 248

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 5/199 (2%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
            +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+   ++++I
Sbjct: 46  DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 101

Query: 98  FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
            GD+D DGA +  + +  L      + +  +P+R   GYG  P ++E  +    QL+ITV
Sbjct: 102 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 161

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           D G +S + +  A   G+ V+V DHH    E   A A+VNPN+         L   GV+F
Sbjct: 162 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 221

Query: 217 LVLVLIYRILRQDNKVPLN 235
            VL+ +   LR       N
Sbjct: 222 YVLMALRARLRDTGWFESN 240


>gi|302874947|ref|YP_003843580.1| phosphoesterase RecJ domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307690435|ref|ZP_07632881.1| phosphoesterase RecJ domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577804|gb|ADL51816.1| phosphoesterase RecJ domain protein [Clostridium cellulovorans
           743B]
          Length = 292

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 11/281 (3%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P ++ + DKA  R+V AI N EKI+I+G YDVDG  SV++++  L +   +   +IP+ 
Sbjct: 20  NPFLMKNVDKALERVVAAINNQEKIVIYGYYDVDGITSVSMLLLMLRYLKADVEYFIPET 79

Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
                     +++  I   GA LI+T+ CG  SY+ ++     GIDV++ID+  +    +
Sbjct: 80  ANANREIQYEVVKNHIKFLGADLILTIGCGINSYNQVELCKELGIDVVIIDNRSI-ENIV 138

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           P    +N  + D       L  AG+ +  +  +               +   LDL  L T
Sbjct: 139 PKTITINTKQKDCSYPFKDLSGAGMAYKFIEAV-------GIFYQIKSITKYLDLCMLGT 191

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT--AENLGYMIGPSINA 307
           +   VPL+  N+  V  G+       N G+ ALIE  N+ S     A  L + + P INA
Sbjct: 192 ISSDVPLLDENKTLVELGISHLCDTKNHGINALIEENNVYSINEAAAYKLAFTVIPRINA 251

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES 348
            GR+  + +   L  +DD    + +A  L       + +  
Sbjct: 252 IGRMDNARIVVELFTTDDKYRAKQIAKYLIKEVNLNKNIIK 292


>gi|148543893|ref|YP_001271263.1| phosphoesterase domain-containing protein [Lactobacillus reuteri
           DSM 20016]
 gi|184153293|ref|YP_001841634.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus reuteri
           JCM 1112]
 gi|227364801|ref|ZP_03848849.1| phosphoesterase domain protein [Lactobacillus reuteri MM2-3]
 gi|325682574|ref|ZP_08162091.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           reuteri MM4-1A]
 gi|148530927|gb|ABQ82926.1| phosphoesterase, RecJ domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224637|dbj|BAG25154.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus reuteri
           JCM 1112]
 gi|227070145|gb|EEI08520.1| phosphoesterase domain protein [Lactobacillus reuteri MM2-3]
 gi|324978413|gb|EGC15363.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus
           reuteri MM4-1A]
          Length = 155

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74
           F+W              + ++  I  I+A +L  + +   + AK F  PS+  +  DP +
Sbjct: 6   FKWKL-ADNASSATVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIH-DPTL 63

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D DKA  RI QA+   E+I I+GDYD DG  S +LM   L     N N Y+P+R  DG
Sbjct: 64  LHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRFTDG 123

Query: 135 YGPNPSLMEKFINEGAQLI 153
           YGPN    ++     A  +
Sbjct: 124 YGPNMDAYQRLWAYLATFL 142


>gi|255024154|ref|ZP_05296140.1| single-stranded-DNA-specific exonuclease (RecJ) [Listeria
           monocytogenes FSL J1-208]
          Length = 300

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/314 (32%), Positives = 164/314 (52%), Gaps = 16/314 (5%)

Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163
           DG  S+A++M+ L H   NA  YIP+R  +GYGPN +  +   N+G  LIITVD G  + 
Sbjct: 1   DGVTSIAVLMKTLRHLGANAEFYIPNRFTEGYGPNIAAFDMAKNQGTDLIITVDNGIAAL 60

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           + + +A   G+DVIV DHH+ +     A A+++P           L   GV + +   + 
Sbjct: 61  EVMTHAKEIGLDVIVTDHHEPREVMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHAL- 119

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
             L ++           LLDLVA+ TV D+V L   NR  V  GL   R   N GL  L 
Sbjct: 120 --LGEEP--------KELLDLVAVGTVADLVSLTDENRLLVQLGLRQLRESANLGLSVLA 169

Query: 284 ERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
           ++ ++     T E +G+ + P +NA GR+G ++  + LL+++D +E   LA ++D  N+ 
Sbjct: 170 KKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKE 229

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+ +     + A   +  +       +V+VV G+ W+ GI+G++A++L   + RP+  + 
Sbjct: 230 RKQIVVDTTKLAMEAIEAKET---LGNVLVVYGEGWNTGILGIVASKLVGTYSRPAIVLG 286

Query: 403 FEE-DGKGIGSGRS 415
            +   G   GSGRS
Sbjct: 287 IDPVTGIAKGSGRS 300


>gi|28211808|ref|NP_782752.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani
           E88]
 gi|28204250|gb|AAO36689.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani
           E88]
          Length = 281

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 11/266 (4%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           + DP ++   D+A +RI++A+   EKI+++G YD+DG A+V+++   L + + +   +I 
Sbjct: 7   LHDPFLMKGMDEALKRIIKAVNKREKIVVYGCYDLDGIAAVSVLFLVLKYLNADVEYFIS 66

Query: 129 DRIVDGYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           D   D +  N  +++      G  L+IT  CGS SYD ++     GIDVI+ D+H+ + E
Sbjct: 67  DGCKDNFEINSDIVKNHVKFLGTNLMITAGCGSNSYDQIELCKKLGIDVIITDYHKCRDE 126

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
            +P   ++NPN+ D       L ++GVV+ ++  I               +   LDL+ L
Sbjct: 127 -VPNTLMINPNQKDCTYPFKELTSSGVVYKLVQAIS-------CYYQMKCVHKYLDLIML 178

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSI 305
                  P +G N+  V +GL       N GLKAL +              +   + PS 
Sbjct: 179 GVSSTKPPYVGENKFIVEQGLYHINFTNNYGLKALAKVNKEKKITFKNINMILEDLMPSS 238

Query: 306 NAGGRIGESNLGSRLLISDDSQELEM 331
           N+   +  S +   L  + +    E 
Sbjct: 239 NSPRVLDNSRITVELFTTSNIDRAEQ 264


>gi|119953053|ref|YP_945262.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia turicatae
           91E135]
 gi|119861824|gb|AAX17592.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia turicatae
           91E135]
          Length = 704

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 162/473 (34%), Gaps = 17/473 (3%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
             W            + I +K+ I  + A +L+ R +  +    F+  S+  LM +P +L
Sbjct: 2   KIWEKKEIDIKKENIINIAKKYNISILEATLLLRREIKEEDFLFFIESSV-NLMHNPFLL 60

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +K   R+ +AI   E ++IFGD D DG  +  +M   L    +N    IP      Y
Sbjct: 61  KNINKFIYRMNEAIAEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF-Y 119

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G    +++K + +   +IITVDCG ++ +   YA ++ I+VI+ DHH    E      ++
Sbjct: 120 GLTKEIIDKALEDKISIIITVDCGISNIEEANYARSKNIEVIITDHHLPNKEIDIENIII 179

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P+   DLS    +    V F   + +Y      +   L    +  L L  L     +  
Sbjct: 180 DPHLKGDLSPFKEIAGCYVSFKACLALY-----LSTTNLYNKNMVFLFLERLNNNITLHA 234

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSINAGGRIGE 313
           +   N        + +       +  L E       I    +    ++    N    I  
Sbjct: 235 IEINNYILKKYITLESNNDLQININKLEEFSQSKYIIVFNKDEQNQLLNEFFNHKIDIET 294

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE-------QAEAKVLTQCDDIQ 366
            ++    +     +  +    +L  + +  +  E  + E            +        
Sbjct: 295 IDISENFV-KKYPKFAKKTLKELMQITKYFKYREINIKEKLYYIFYNIIFAINKDLLKNC 353

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
              +  V        +  +   R+  + G    A+        +    +I    +     
Sbjct: 354 LKRLKFVAIGTIADNMPIINENRIVVREGLKEIALRENISINYLLKEANILTKPMITATD 413

Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479
            A +   ++   G    A +T++ +    +     KF       ++      I
Sbjct: 414 IAFKIAPILNSTGRLEKADITIQFLLTEDINQIENKFKEIKNINILRKRKEDI 466



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 189/482 (39%), Gaps = 26/482 (5%)

Query: 111 LMMRFLSHCSVNANMY---IPDRIVDGYGPNPSLMEKFIN------EGAQLIITVDCGST 161
           ++  FL   + N  ++   I + I+  Y    S  +  IN            I V     
Sbjct: 218 MVFLFLERLNNNITLHAIEINNYILKKYITLESNNDLQININKLEEFSQSKYIIVFNKDE 277

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221
               L    N  ID+  ID  +   ++ P +A      L  ++         +   +  +
Sbjct: 278 QNQLLNEFFNHKIDIETIDISENFVKKYPKFAKKTLKELMQITKYFKYREINIKEKLYYI 337

Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281
            Y I+   NK  L   L   L  VA+ T+ D +P+I  NR  V +GL     + N  +  
Sbjct: 338 FYNIIFAINKDLLKNCLKR-LKFVAIGTIADNMPIINENRIVVREGLKEIALRENISINY 396

Query: 282 LIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339
           L++  NI     ITA ++ + I P +N+ GR+ ++++  + L+++D  ++E    ++  +
Sbjct: 397 LLKEANILTKPMITATDIAFKIAPILNSTGRLEKADITIQFLLTEDINQIENKFKEIKNI 456

Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
           N  R+  E          ++      +    IV        GI   +A RL   + + + 
Sbjct: 457 NILRKRKEDISWNTHNENII-----FKNDKFIVCYDKHTPKGISSRMATRLSTYYQKVAV 511

Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459
            ++ +E     GS RS    +  +++S  +   +++  GGH  AAG T+           
Sbjct: 512 FLTRQE-NIIKGSIRSNNKVNSKELISM-IPNHLIINSGGHKAAAGFTLYESVLNEFIKE 569

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
            +     I    +      ID ++        L+ ++    PYG G    VF   N  +Q
Sbjct: 570 LENALEKIEYKELYEDSILIDAIIPKDFNKKELLKIINLFEPYGHGFREFVFMMENVYIQ 629

Query: 520 SIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
            +R ++      H+ M  ++ + +  +AI F   GT   + L    G+ + +   +  + 
Sbjct: 630 DLRTIDKNGNSKHISMKIKN-NKDYYKAIYFN--GTQNIQKLGIKDGQNIDIICTISEDL 686

Query: 576 WR 577
           + 
Sbjct: 687 YN 688


>gi|301063789|ref|ZP_07204290.1| DHH family protein [delta proteobacterium NaphS2]
 gi|300442108|gb|EFK06372.1| DHH family protein [delta proteobacterium NaphS2]
          Length = 180

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74
             W         +    +  +  +  + A++L NR+++     K FL+P +  +M DP+ 
Sbjct: 9   KIWKLAPQS---SFVSQLVAEVNVTPLQAQLLANRHLTDVHTIKPFLSPRLSQMM-DPMG 64

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   + A   I++A+    KI ++GDYD DG  + AL+  FLSH  ++ + Y+PDR+ +G
Sbjct: 65  MKGMNDAVESILRAMEEQRKITVYGDYDADGLTATALLAVFLSHLGISVSTYVPDRLKEG 124

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
           YG N   +++   +GA LIITVDCG ++ + +  A   G+DV++ DHHQ+  E  P
Sbjct: 125 YGLNKKAVKRIQADGAGLIITVDCGISNGEEVNLAKTLGMDVVITDHHQMPPELKP 180


>gi|328553016|gb|AEB23508.1| single-strand DNA-specific exonuclease; phage SPbeta [Bacillus
           amyloliquefaciens TA208]
          Length = 562

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 117/593 (19%), Positives = 210/593 (35%), Gaps = 57/593 (9%)

Query: 30  ALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89
              +  ++   + +  ++ NR+++   A  F N +  ++     +L + DK    +++ I
Sbjct: 2   IYKLIGENDYKNPIYTIIKNRDIN---ADTFFNLNSSVINHY-SLLNNMDKGINCLLKHI 57

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFIN 147
                I I  D D DG  S A+++ +L+           + D+   G         + I 
Sbjct: 58  ELKNNIFIQVDSDCDGYLSSAILINYLNQAFPGTKVKWRLHDKKDHGASL------ETIP 111

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
           E   L+I  D GS  Y   Q    +GID +V+DHH+ + E     A++  N+L +     
Sbjct: 112 EDTHLLIIPDAGSNQYALHQELKERGIDTLVLDHHECEKES--NAAIIINNQLSNEYQNK 169

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVK 266
            L   G+V+     +   L  D          S LDLVA+  + DV+ L     R YV K
Sbjct: 170 RLSGVGIVYKFCKALDDKLGLD-------LADSFLDLVAIGNIGDVIDLREPETRYYVKK 222

Query: 267 GLMVARRQGNPGLKAL--IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL--- 321
           GL       NP +K +   +   +   I      + I P INA  R       + ++   
Sbjct: 223 GLKQI---KNPLIKEIVGRQSFFLDGNINIHFTAFSIVPFINAAIRYATMEEKTDMMKAL 279

Query: 322 ----------ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                          + +     +     +NR+            + L + +      ++
Sbjct: 280 LGSQESVYYPRKKIYEPIVKSVARRISNTKNRQKKSLEKPVNVLIEQLIKENKTNDKVIV 339

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431
           +   D       GL+A +L +KF RP       ++GK  GS R  E   I        E 
Sbjct: 340 LDVSDELKSSFTGLVATQLAKKFKRPVMLGRKTKEGKFGGSARGYEKSGIKDFKQLLTET 399

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
           G+     GHA A G  +E   F  L              ++   V ++D ++ A+ ++  
Sbjct: 400 GLFNFCEGHANAFGFEIEAEYFENLSTQLNSIIEA---DVLLEDVHEVDFIIPAADMDAT 456

Query: 492 LIDMLESAG-PYGAGNPNPVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQAIAFRV 548
           LI  +      +G+    P+ A    ++    +RV             + +         
Sbjct: 457 LIKSIHKYRDDWGSTVEEPLIAIEGIQINNTDVRVYKNRTSTFVINVGEYKL-------T 509

Query: 549 YGTPLGEFLMQSRGK----RMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
                G+F            + V G   VN +       + ++D    +   F
Sbjct: 510 KPYYKGDFDELFDNGDETFYLDVVGKCKVNKYENKSAPAVEIVDIEVTDSFLF 562


>gi|258616312|ref|ZP_05714082.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium
           DO]
          Length = 155

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 15  GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73
            F W     +      L + ++  +   V ++L  R    +     FL+P  + L  DP 
Sbjct: 5   NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           ++ D DKA  RI +A+ + EKI+++GDYD DG  S  +M   L        +++P+R   
Sbjct: 63  LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164
           GYGPN S+ ++ I EG QLIITVD G    D
Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGND 153


>gi|331269248|ref|YP_004395740.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum BKT015925]
 gi|329125798|gb|AEB75743.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Clostridium botulinum BKT015925]
          Length = 303

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 11/275 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           D   LT+ +KA  RI +A+   EKI+I G YD+DG  SV+L+M  L + + +   YIPD 
Sbjct: 23  DSFSLTEVEKALNRITKAVNEREKIVICGSYDLDGITSVSLLMLILKYLNADVEYYIPDT 82

Query: 131 IVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           +  G   N +++E  I   GA LIITV CG  S   ++   N GIDVI+ D+H      I
Sbjct: 83  LEKGDIFNCNVIENHIKLLGASLIITVGCGVNSVKEVELCRNLGIDVIITDYH-KPKTSI 141

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           P   ++NPN  D +     L A G+ + +  +I               +   LDLVA+  
Sbjct: 142 PNTIVINPNGKDYVYSLQSLNAVGIAYKLACVIAE-------NYHMKCVEKYLDLVAVGI 194

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINA 307
               VPL+G N   + KG+       N G+KA+    NI     +T + +  ++ P +NA
Sbjct: 195 ASSNVPLVGENLDMLEKGMSYMVDTNNHGIKAITTINNIKKIDFLTLKKICKIVMPKVNA 254

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            GR+ ++ +   L  + DS+  + +A  ++   + 
Sbjct: 255 VGRMDDARIVVELFTTSDSERAKRIAKYINKKKEC 289


>gi|328947956|ref|YP_004365293.1| single-stranded-DNA-specific exonuclease RecJ [Treponema
           succinifaciens DSM 2489]
 gi|328448280|gb|AEB13996.1| single-stranded-DNA-specific exonuclease RecJ [Treponema
           succinifaciens DSM 2489]
          Length = 721

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 14/235 (5%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72
           S  +WV             +  K ++  + A +   R ++       F+   +R    +P
Sbjct: 2   SSSKWVKKAIS--KEEVEKLKNKFSLDSLTASIFARRGITSGKDILYFMEDDLR-FQHNP 58

Query: 73  LILTDCDKAARRIVQAI-------YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
            +    + A  RI+ A+          EK++IFGD DVDG  +  ++   L    ++   
Sbjct: 59  FLFNSMEDAVDRILAAVPEKDSPKEEHEKVLIFGDKDVDGVTATTVLYDELCSLGIDVQY 118

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
            +P+   D YG +   ++ F  +   LIITVDCG ++   +++A + GIDVIV+DHH  K
Sbjct: 119 RVPE-GDDAYGLSIQAVDDFAKQNGSLIITVDCGISNNAEIEHAADLGIDVIVLDHHNPK 177

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
                   ++N    D       +    VV+ V+  +     +      +  LL+
Sbjct: 178 ENIPSPAIILNAKLSDSGYPFEEISGCAVVYKVVSALR--FSKSKWYKADEALLN 230



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 165/392 (42%), Gaps = 14/392 (3%)

Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
            G       G  + + V   +   + N    +      L LVALA + D++P+   NR +
Sbjct: 335 YGDHAPTEIGGFYNIFVTYVQQDLKKNFPSDSEKEKHDLQLVALAALADIMPMRNENRLF 394

Query: 264 VVKGLMVARRQG-NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           V  G+        +PGLK L+  + +    IT+ ++ + + P++NA GR+G++ +   L 
Sbjct: 395 VRSGINSINENNVHPGLKELMSNLGLLGKRITSTDICWTLIPNLNAAGRLGQAGIAIELF 454

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
            + D    E LA K+  LN  R+         A  +     +D     +  V  ++ + G
Sbjct: 455 TAKDDSYREQLAKKIIELNTKRKAFTQEAEAIAGTQARNSVNDF-NGKLSFVIDEKINKG 513

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441
           + G+LA RL    G P+ A+++      +GS RS  G+D+         + + V  GGH 
Sbjct: 514 VSGILAGRLVSSLGVPAMAMTYVG-NLVVGSMRSCRGYDVTAF--LDQLKDLFVSYGGHN 570

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
            AAG + E+  F       ++     +         +ID  L  S +   L  +++   P
Sbjct: 571 FAAGFSFEKEKFEEFKRRTKEL-SGTINLSDKNDEIQIDAELPPSYMTPDLKKIIDRFEP 629

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN---LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
            G  NP  VF   N  + S  V+      HL++T +   ++    I +        +F  
Sbjct: 630 TGNENPKLVFLAKNLPIVSGLVMGKAEKQHLKITVDCGKNK-WPCIFWNEGERLHRDF-- 686

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
              G ++++  ++  N + G++  QL +L   
Sbjct: 687 -DVGDKINIIFNIERNVFNGAETLQLMLLGIE 717


>gi|15895544|ref|NP_348893.1| SS-DNA-specific exonuclease domain-containing protein [Clostridium
           acetobutylicum ATCC 824]
 gi|15025280|gb|AAK80233.1|AE007728_12 Protein related to N-terminal domain of SS-DNA-specific exonuclease
           RecJ [Clostridium acetobutylicum ATCC 824]
 gi|325509692|gb|ADZ21328.1| N-terminal domain of SS-DNA-specific exonuclease RecJ [Clostridium
           acetobutylicum EA 2018]
          Length = 289

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           M +P ++   ++A +RI +AI N EKI+++G  DVD    +++M+  L + + +    IP
Sbjct: 16  MHNPFLIEGMNEALQRIAKAINNREKIVLYGYCDVDSIIGMSIMLLVLKYLNADVEYLIP 75

Query: 129 DRIVDGYGPNPSLM-EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           D     Y  N   + +K    GA L+IT+ CG  S ++        ID IV+D+H++ +E
Sbjct: 76  DDFCGSYEVNADYVNDKIKYFGANLLITIGCGINSKESTALLKKLKIDTIVVDYHEMCNE 135

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
                 +VNPNR +        C +G+VF +   I               +   LDL A+
Sbjct: 136 -EDYAIVVNPNRKESKYPFNEFCVSGIVFKLCEAIS-------MYYQMKCVNKYLDLAAI 187

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSI 305
            T+     L G N+  V +G+   +   N G++AL++  ++      E   L   + P++
Sbjct: 188 GTIHKCEELSGENKIIVDQGIRKIQNTNNYGIEALLKLKSVEKVDIDEVRKLSEAVVPTV 247

Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           NA G++  + +  +L  ++DS + E +A  L+ 
Sbjct: 248 NAVGKMDNARIIVQLFTTEDSYKAEQIAKYLNN 280


>gi|153955749|ref|YP_001396514.1| hypothetical protein CKL_3135 [Clostridium kluyveri DSM 555]
 gi|146348607|gb|EDK35143.1| Conserved hypothetical protein related DNA exonuclease [Clostridium
           kluyveri DSM 555]
          Length = 283

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 10/274 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           M +P +L D ++A ++I++A+   EKI+I+G  D+DG ASVA+++  L + + +   +I 
Sbjct: 16  MENPFLLKDMEEAMKKIIKAVNKREKIVIYGTCDLDGIASVAILLLVLKYLNADVEYFIS 75

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           D+I D    +  +       GA+LIIT  CG  S   ++     GIDVI+ D+H+     
Sbjct: 76  DKINDSSIKSDIIENHIKFLGAKLIITAGCGIKSLPEIELCKRLGIDVIITDYHKCGK-F 134

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           +P   ++NPN+         L A GVVF +   +               +   LDLV L 
Sbjct: 135 LPETIIINPNQPGCRYPFKDLIAVGVVFKLCQAVS-------IYYNMKYVSKYLDLVTLG 187

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSIN 306
                  + G N   V +G+       N G+KAL++   I +            I  SI+
Sbjct: 188 IFSKKSYITGENEIMVREGMRYLNYTNNYGVKALLKVNKIHTINQENICELSNKIISSIS 247

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340
               I  + +   L  ++     E +A  L    
Sbjct: 248 CKRYIDNARIAVELFTTESIDRAEQIAKYLKNEM 281


>gi|219856117|ref|YP_002473239.1| hypothetical protein CKR_2774 [Clostridium kluyveri NBRC 12016]
 gi|219569841|dbj|BAH07825.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 10/274 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           M +P +L D ++A ++I++A+   EKI+I+G  D+DG ASVA+++  L + + +   +I 
Sbjct: 26  MENPFLLKDMEEAMKKIIKAVNKREKIVIYGTCDLDGIASVAILLLVLKYLNADVEYFIS 85

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           D+I D    +  +       GA+LIIT  CG  S   ++     GIDVI+ D+H+     
Sbjct: 86  DKINDSSIKSDIIENHIKFLGAKLIITAGCGIKSLPEIELCKRLGIDVIITDYHKCGK-F 144

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           +P   ++NPN+         L A GVVF +   +               +   LDLV L 
Sbjct: 145 LPETIIINPNQPGCRYPFKDLIAVGVVFKLCQAVS-------IYYNMKYVSKYLDLVTLG 197

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSIN 306
                  + G N   V +G+       N G+KAL++   I +            I  SI+
Sbjct: 198 IFSKKSYITGENEIMVREGMRYLNYTNNYGVKALLKVNKIHTINQENICELSNKIISSIS 257

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340
               I  + +   L  ++     E +A  L    
Sbjct: 258 CKRYIDNARIAVELFTTESIDRAEQIAKYLKNEM 291


>gi|300856536|ref|YP_003781520.1| putative single-stranded-DNA-specific exonuclease RecJ [Clostridium
           ljungdahlii DSM 13528]
 gi|300436651|gb|ADK16418.1| predicted single-stranded-DNA-specific exonuclease RecJ
           [Clostridium ljungdahlii DSM 13528]
          Length = 282

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 10/272 (3%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           M +P +L D +KA +RI++A+   EKI+I+G  D+DG  SV+LM+  L + + +   +I 
Sbjct: 16  MNNPFLLKDMEKALKRIIKAVNEREKIVIYGTCDLDGITSVSLMLLVLKYLNADVEYFIS 75

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
           D+I D    +  +       GA++IIT  CG  S   ++     GIDVI+ D+H+     
Sbjct: 76  DKINDYSIKSDIIKNHIKFLGAKVIITAGCGIQSVSQIELCKTLGIDVIITDYHKSGE-I 134

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           +P   +VNPN+         L A GV F +   I               +   LDLVAL 
Sbjct: 135 LPKAIIVNPNQKQCTYPFKDLTAVGVTFKLSQAIS-------MYYDMKYISKYLDLVALG 187

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306
                + + G N+  V +G+   +   N G++AL++  +ISS        L   +  SI 
Sbjct: 188 IFSRGIDITGENKIMVNEGMYYLKCTNNYGVRALLKVNDISSVNIENVRELSNKMMCSIK 247

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
               I  + +   L I+++    E +A  L  
Sbjct: 248 NKRYIDNARIAVELFITENMDRAEQIAKYLKN 279


>gi|253682373|ref|ZP_04863170.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum D str. 1873]
 gi|253562085|gb|EES91537.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum D str. 1873]
          Length = 298

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 11/275 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           D    T+  KA  RI +A+   EKI+I G YD+DG  SV+L+M  L + + +   YIPD 
Sbjct: 18  DSFSSTEVKKALNRITKAVNEREKIVICGSYDLDGITSVSLLMLILKYLNADVEYYIPDT 77

Query: 131 IVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           +      N +++E  I   GA LIITV CG  S + ++   N GIDVI+ D+H      I
Sbjct: 78  LEKSDIFNCNVIENHITLLGASLIITVGCGINSVEEVELCRNLGIDVIITDYH-KPKINI 136

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           P   ++NPNR D +    +  A G+V+ +   I               +   LDLVA+  
Sbjct: 137 PNTIVINPNRKDGIYSFENFNAVGIVYKLSCAIAE-------NYHMKCVEKYLDLVAIGI 189

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINA 307
               VPL+G     + KG+       N G+KA+ +  NI     +T + +  ++ P +NA
Sbjct: 190 ASSNVPLVGETLDMLEKGMSYMVNTNNHGIKAITKINNIKKIDFLTLKEICNIVMPKVNA 249

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            GR+ ++ +   L  + DS+  + +A  ++   + 
Sbjct: 250 VGRMDDARIVVELFTTSDSERAKRIAKYINKKKEC 284


>gi|21324506|dbj|BAB99130.1| Single-stranded DNA-specific exonuclease [Corynebacterium
           glutamicum ATCC 13032]
          Length = 626

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 202/586 (34%), Gaps = 89/586 (15%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD-RIVD 133
           L D D+A   I   I  +++I I  D+D+DG ++  +    L+      NM +PD R   
Sbjct: 50  LPDSDRATALIHDHITKAQEITIITDFDMDGISAGVIAYAGLAELGAQVNMVVPDYRGER 109

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
               +       +     LIIT D G  S++ +  A  + I V+V DHH        A  
Sbjct: 110 NVTASDIDRALELYPATSLIITCDVGIGSHEGIARAHERSIAVLVTDHHMEVEPCQ-ADV 168

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NPNR+D       +C A V+F  L    R  R D  +    D+  L     +  + DV
Sbjct: 169 VLNPNRIDSDYPNKDICGAQVIFATLSDYARRYRADKII----DINLLAVFSGIGALADV 224

Query: 254 VPLIGLNRAYVVKGLM-------------------VARRQGNPGLKALIERVNISSP--- 291
           +PL    R  V + +                     A R  NP    L+  VN S     
Sbjct: 225 MPLTRDTRPTVKQAIALLRLAIPQVSKNRFGGWDTYAARSVNPDTSTLMHIVNASQHDHR 284

Query: 292 --------------------------ITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325
                                     I+   +G+ +GP  NA  R+G     S L+ +  
Sbjct: 285 FIAAFQGISILLGELIAQKKLVNIDNISESFIGFTLGPMFNATRRVGGDMHDSFLVFAPH 344

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAK-VLTQCDDIQQASVIVVEGDRWHPGIVG 384
           +      +M  +      R++++    +  +K          Q     V       GI+G
Sbjct: 345 AALASQPSMNPNRHAAISRIIDNNERRKELSKSSYAAVHSSDQPYAPFVWLSEAPSGILG 404

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD-IGKMVSFAVEEGILVKGGGHAMA 443
           L+A++L  +   P+  I         GS RS E    I ++ + + +    +   GH  A
Sbjct: 405 LIASQLTRESDVPAIVI---NPDTLSGSARSPEWAPIITQVNTLSAQGHGGIHAAGHEYA 461

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK----------------------IDG 481
            G+  +  +                P                               +D 
Sbjct: 462 CGMRFDNHDDIVTFVATLDALDKNTPREAQPADLHLVDIDHARPVLDNPSLTQELSTVDA 521

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSET 540
            ++A+ + + LID L+   P+G G   P         +   +V+   H  +   +    T
Sbjct: 522 AVDAAQL-LVLIDQLDQLQPFGHGFTYPRIDVTFRPAETEFKVMGQHHQHLKVITHSGLT 580

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           L  + +        +    ++ + + ++  L VN +RG    Q  V
Sbjct: 581 L--LWWN----KAQQLDEIAQSELVTMSVELDVNMFRGFISPQGIV 620


>gi|19552941|ref|NP_600943.1| single-stranded DNA-specific exonuclease [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390618|ref|YP_226020.1| single-stranded-DNA-specific exonuclease [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325956|emb|CAF20119.1| SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 620

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 202/586 (34%), Gaps = 89/586 (15%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD-RIVD 133
           L D D+A   I   I  +++I I  D+D+DG ++  +    L+      NM +PD R   
Sbjct: 44  LPDSDRATALIHDHITKAQEITIITDFDMDGISAGVIAYAGLAELGAQVNMVVPDYRGER 103

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
               +       +     LIIT D G  S++ +  A  + I V+V DHH        A  
Sbjct: 104 NVTASDIDRALELYPATSLIITCDVGIGSHEGIARAHERSIAVLVTDHHMEVEPCQ-ADV 162

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           ++NPNR+D       +C A V+F  L    R  R D  +    D+  L     +  + DV
Sbjct: 163 VLNPNRIDSDYPNKDICGAQVIFATLSDYARRYRADKII----DINLLAVFSGIGALADV 218

Query: 254 VPLIGLNRAYVVKGLM-------------------VARRQGNPGLKALIERVNISSP--- 291
           +PL    R  V + +                     A R  NP    L+  VN S     
Sbjct: 219 MPLTRDTRPTVKQAIALLRLAIPQVSKNRFGGWDTYAARSVNPDTSTLMHIVNASQHDHR 278

Query: 292 --------------------------ITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325
                                     I+   +G+ +GP  NA  R+G     S L+ +  
Sbjct: 279 FIAAFQGISILLGELIAQKKLVNIDNISESFIGFTLGPMFNATRRVGGDMHDSFLVFAPH 338

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAK-VLTQCDDIQQASVIVVEGDRWHPGIVG 384
           +      +M  +      R++++    +  +K          Q     V       GI+G
Sbjct: 339 AALASQPSMNPNRHAAISRIIDNNERRKELSKSSYAAVHSSDQPYAPFVWLSEAPSGILG 398

Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD-IGKMVSFAVEEGILVKGGGHAMA 443
           L+A++L  +   P+  I         GS RS E    I ++ + + +    +   GH  A
Sbjct: 399 LIASQLTRESDVPAIVI---NPDTLSGSARSPEWAPIITQVNTLSAQGHGGIHAAGHEYA 455

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK----------------------IDG 481
            G+  +  +                P                               +D 
Sbjct: 456 CGMRFDNHDDIVTFVATLDALDKNTPREAQPADLHLVDIDHARPVLDNPSLTQELSTVDA 515

Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSET 540
            ++A+ + + LID L+   P+G G   P         +   +V+   H  +   +    T
Sbjct: 516 AVDAAQL-LVLIDQLDQLQPFGHGFTYPRIDVTFRPAETEFKVMGQHHQHLKVITHSGLT 574

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           L  + +        +    ++ + + ++  L VN +RG    Q  V
Sbjct: 575 L--LWWN----KAQQLDEIAQSELVTMSVELDVNMFRGFISPQGIV 614


>gi|300871302|ref|YP_003786175.1| single-stranded-DNA-specific exonuclease [Brachyspira pilosicoli
           95/1000]
 gi|300689003|gb|ADK31674.1| single-stranded-DNA-specific exonuclease [Brachyspira pilosicoli
           95/1000]
          Length = 723

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 98/433 (22%), Positives = 176/433 (40%), Gaps = 21/433 (4%)

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
              YD +      G +   ++   VK+ +  A  L       D      L     +F  +
Sbjct: 302 LPEYDNVYDLLQLGANYGGVNIKSVKTLDEFALLLKVNIYKYDNILYRDLIIKMEIFRRM 361

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             + +         L   +     LV   TV DVVPLI  NRAY+   L    +  +   
Sbjct: 362 YYLSQK-------QLQNYIKRESILVLFGTVADVVPLIEENRAYIKCALAELEKPNHIRY 414

Query: 280 KALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
             ++ER+ + ++ +  + + + + P INA GR+G+     RLL S+  +E   L+ ++  
Sbjct: 415 NVILERIKLLNTKVDTQAVSWRLAPFINAAGRMGKPEYALRLLTSETREEAFQLSEEVYN 474

Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398
           LN+ R+ +  +        +     +     +I+V+ D    G+ GL+A ++  ++G+ +
Sbjct: 475 LNETRKSLTESNFNIVCEYIKEN--NCMSYPIIIVKSDLIDRGLTGLIAGKVLSQYGKTA 532

Query: 399 FAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
             +   +EDG   GS RS    +   M+        L K GGH  AAG TV   NF +  
Sbjct: 533 VILYESKEDGVCTGSIRSRGDDNARDMLE--YSSVYLDKFGGHKNAAGFTVSVNNFEKFA 590

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
               K+A               D  L+   +N+   + LE   PYG  N  PVF+     
Sbjct: 591 KKIIKYASEENFNTSKDEK-TYDLELDFKDINMQFAEYLELFEPYGFANEEPVFSTNRVT 649

Query: 518 LQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574
           + SI  +N     HL++  + ++     AI +        E         ++++  + +N
Sbjct: 650 INSIEKINKNNKIHLKLQLQ-KNGIRANAIIWSSSEE---ECSKLEASNFINISYKIKIN 705

Query: 575 YWRGSKRCQLRVL 587
            + GSK  ++ + 
Sbjct: 706 RFNGSKEVKIYIE 718



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 38  AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96
            +  I+  +L  R V S +   DF    I  L  +P  + D +    R+ +AI  +EKI+
Sbjct: 8   NLNPIIKELLKLRGVVSKEDIFDFFFQDIYSL-SNPFNIRDMNAFVDRLKEAIEYNEKIL 66

Query: 97  IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156
           I+GD D DG  + +++   L   + N   ++P+    GYG +  ++E + N G  LIITV
Sbjct: 67  IYGDKDADGVTAASIIYNTLKAVTKNVEAFVPN-HEVGYGLSKDVIESYANSGVSLIITV 125

Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216
           DCG ++ + +++A    ID+IV DHH +      AY + NP   +      +     V F
Sbjct: 126 DCGISNVEEVEFAREHSIDIIVTDHHDIPEILPNAYLIFNPKLSNTGFVSKNFSGCAVAF 185

Query: 217 LVLVLI 222
            ++   
Sbjct: 186 KLMQAF 191


>gi|183220699|ref|YP_001838695.1| single-stranded-DNA-specific exonuclease RecJ [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910800|ref|YP_001962355.1| single-stranded DNA-specific exonuclease [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775476|gb|ABZ93777.1| Single-stranded DNA-specific exonuclease [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779121|gb|ABZ97419.1| Single-stranded-DNA-specific exonuclease RecJ [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 662

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 19/369 (5%)

Query: 229 DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV------KGLMVARRQGNPGLKAL 282
                    L    DL  + T+ D++PL+G NR +V         L V  ++     + L
Sbjct: 296 QKIPEFFEQLEEETDLAGIGTITDMMPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELL 355

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            E       IT ++LG+ IGP INA GR+G++     LL+S++  E +  A  L  +N+ 
Sbjct: 356 KELKLNPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENELEAKTRAKLLLSINEE 415

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R+      +++ E +   +  +      I        PG+ G++A R+ + + +P+  I+
Sbjct: 416 RKERTKRNMDRVE-RYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIA 474

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
             ++G   GS RS    ++  ++    E    +  GGH  A G ++      +L     +
Sbjct: 475 -PDNGDARGSVRSYGQENVLTLLESLSEH--FLHFGGHPEAGGFSISIDQIPKLEAALYE 531

Query: 463 FAHNIVPALITTPV---FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
            A   +      P       D  +    +   L+   +   P+G GNP+      N K  
Sbjct: 532 KAKLWLAEDEERPKEHLINTDFTVLPEEMGEKLLKEWKDLEPFGQGNPDIKLGIRNAKAI 591

Query: 520 SIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578
            +  +    H++       S +L+ + +   G     F+         + G L  N+++G
Sbjct: 592 HLTPLSGGKHVRFHII--GSGSLKYMIWN-KGEEFQSFMSNH--GSFDLVGSLEENFYQG 646

Query: 579 SKRCQLRVL 587
               Q  V 
Sbjct: 647 RSTLQFIVE 655



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 9/188 (4%)

Query: 41  DIVARVLVNR--NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
            ++ R LV+R   +     K+ L      L   P  L D + A   ++    +++KI+++
Sbjct: 14  PLL-RYLVDRREGLKNTSPKELLFSDFSCLH-SPFSLPDIEDAVSLLLSFAKSNKKILLY 71

Query: 99  GDYDVDGAASVALMMRFLSH----CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           GD D DG +S  L+  FL       + N  + +     D YG     + K       L++
Sbjct: 72  GDRDSDGVSSTCLLAFFLKSHPEFLTANLEVMVSS-ESDPYGLCKEAVSKIQKAKPDLLV 130

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           T+D GS+  D +   T  GI VIV+DHH+V        ALVNP R D    +  +C A +
Sbjct: 131 TLDFGSSQADEIDSLTALGIQVIVLDHHEVPVRIPKNCALVNPRRTDSEYPEKKICTAAL 190

Query: 215 VFLVLVLI 222
            F ++  I
Sbjct: 191 SFKLVSAI 198


>gi|213580223|ref|ZP_03362049.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 173

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 8/178 (4%)

Query: 418 GFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475
           G  +   +         +++K GGHAMAAGL++E   F +    F +     +   +   
Sbjct: 1   GLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQG 60

Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535
               DG L+A+ +++ +  +L  AGP+G   P P+F     +L   R+V   HL++  E 
Sbjct: 61  EVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEP 119

Query: 536 -QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                 L  IAF +  T   +    +  + + +   L +N +RG++  Q+ + D  P+
Sbjct: 120 VGGGPLLDGIAFNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 173


>gi|118443781|ref|YP_877915.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium novyi
           NT]
 gi|118134237|gb|ABK61281.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Clostridium novyi NT]
          Length = 292

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 11/267 (4%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           ++A++RI +A+   EKI+I G YD+DG  SV+L++  L + + +   YIPD +  G   N
Sbjct: 26  NEASKRISRAVNKREKIVICGSYDLDGITSVSLLILILKYLNADVEYYIPDTLQKGDTFN 85

Query: 139 PSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
             ++E  I   GA LIITV CG  S + ++   + GID+I+ D+H+     IP   +V+P
Sbjct: 86  CDIIENHIKLLGASLIITVGCGINSIEEVELCRSLGIDIIITDYHR-PKGNIPNTIVVDP 144

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N         +  A G+ + +   I               +   LDLVAL      VPL+
Sbjct: 145 NDGLSKYSFKNFNAVGIAYKLAESIAEHY-------HVKCIEKYLDLVALGIASSDVPLV 197

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESN 315
           G N   + KG+       N G+KAL E  NI     +T + +  M+ P +NA GR+ ++ 
Sbjct: 198 GENLDMLKKGMSYITDSNNHGIKALTEINNIEYIDFLTLKKMCKMVMPKVNAVGRMDDAR 257

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQN 342
           +   L  + DS+    +A  ++  N+ 
Sbjct: 258 IVVELFTTADSERARRIAKYINKKNEF 284


>gi|309799911|ref|ZP_07694115.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           infantis SK1302]
 gi|308116438|gb|EFO53910.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           infantis SK1302]
          Length = 291

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLG 298
            LLDLVA+ T+ D+V L   NR  V  GL V R     GL+ + E   ISS  +T E +G
Sbjct: 7   ELLDLVAIGTIADMVSLTDENRIMVQYGLEVLRNTQRMGLQEMFEIAGISSSDVTEETVG 66

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
           + + P +NA GR+ + N    LL   D +E+  +A+ +   N+ R+ +  ++ ++A+  V
Sbjct: 67  FQLAPRLNALGRLDDPNPAIDLLTGFDDEEVHEIALLIHQKNEERKEIVQSIYDEAKGMV 126

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418
                   + SV V+  + W+PG++G++A RL E+ G+    ++  EDG+  GS RSIE 
Sbjct: 127 ------DPERSVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNI-EDGRAKGSARSIEA 179

Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478
            DI    +      + +  GGHA AAG+T+E      L D  + +               
Sbjct: 180 VDI--FEALDPHRELFITFGGHAGAAGMTLEEDKLEVLSDLLEAYIREKGADAQGKNNLF 237

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525
           +D  L+   +++  +   E   P+G  N  PVF   + ++++ RV+ 
Sbjct: 238 LDEELDLETLSLETVKSFERLAPFGMDNQKPVFYIRDFQVENARVMG 284


>gi|153867826|ref|ZP_01998054.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. SS]
 gi|152144854|gb|EDN71946.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. SS]
          Length = 333

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 107/325 (32%), Positives = 169/325 (52%), Gaps = 14/325 (4%)

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211
           ++ITVD G +S   ++ A  +G+ V+V DHH    E+  A A+VNPN+  D     +LC 
Sbjct: 1   MLITVDNGISSIKGVKAAKEKGMRVLVTDHHLQGKEKPDADAIVNPNQEGDTFPSKNLCG 60

Query: 212 AGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
            GV+F V++ +   LR+            +L +LLDLVAL TV DVV L   NR  + +G
Sbjct: 61  VGVIFYVMMALRAHLREKGWFTEQGIPEPNLGNLLDLVALGTVADVVTLDYNNRILIEQG 120

Query: 268 LMVARRQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325
           L   R     PG++AL++        + A +L + +GP +NA GR+ + + G   L+S+ 
Sbjct: 121 LRRIRANYCCPGIRALVQISKREQSYLIASDLAFYLGPRLNAAGRMDDMSYGIACLLSET 180

Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385
             E +  A  L++ NQ RRL E+ M ++A   + T  D  +    + +  ++WH G++G+
Sbjct: 181 DFEAKQHADLLEIFNQERRLEEAKMQQEALDMLDTLGDPDKLPIGLCLLDEKWHQGVIGI 240

Query: 386 LAARLKEKFGRPSFAISF------EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKG 437
           LAAR+KE+  RP    +       +      GSGRS+EG  +  ++      +  ++   
Sbjct: 241 LAARIKERLHRPVIIFTHDKDKKDQGQKMIRGSGRSVEGVHLRDVLEGIATQQPEVMGHF 300

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQK 462
           GGHAMAAGLT+    F      F  
Sbjct: 301 GGHAMAAGLTIPHSQFQAFQQAFDP 325


>gi|168187983|ref|ZP_02622618.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum C str. Eklund]
 gi|169294175|gb|EDS76308.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium
           botulinum C str. Eklund]
          Length = 291

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           ++A++RI +A+   EKI+I G YD+DG  SV+L++  L + + +   YIPD +  G   N
Sbjct: 26  NEASKRISRAVNKREKIVICGSYDLDGITSVSLLILILKYLNADVEYYIPDTLQKGDTFN 85

Query: 139 PSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
             ++E  I   GA LIITV CG  S   ++   + GIDVI+ D+H+     IP   +V+P
Sbjct: 86  CDVIENHIKLLGASLIITVGCGINSIREVELCRSLGIDVIITDYHR-PKWNIPNTIVVDP 144

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
           N         +  A G+ + +   I               +   LDLVAL      +PL+
Sbjct: 145 NDGLSKYSFKNFNAVGIAYKLAEFIAEHY-------HVKCIEKYLDLVALGIASSDIPLV 197

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRIGESN 315
           G N   + KG+       N G+KAL E  NI     +T + +  ++ P +NA GR+ ++ 
Sbjct: 198 GENLDMLKKGMSYITESNNHGIKALTEINNIDDIDFLTLKKMCRIVMPKVNAVGRMDDAR 257

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQN 342
           +   L  +  S+    +A  ++  N+ 
Sbjct: 258 IVVELFTTAHSERARRIAKYINKKNEF 284


>gi|297519987|ref|ZP_06938373.1| ssDNA exonuclease RecJ [Escherichia coli OP50]
          Length = 300

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 9/300 (3%)

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYV 264
           +   GV F +++ +   LR             +L  LLDLVAL TV DVVPL   NR   
Sbjct: 1   MAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILT 60

Query: 265 VKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322
            +G+   R  +  PG+KAL+E  N     + A +LG+ +GP +NA GR+ + ++G  LL+
Sbjct: 61  WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 120

Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPG 381
            D+  E  +LA +LD LNQ R+ +E  M  +A       +         + +    WH G
Sbjct: 121 CDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQG 180

Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGG 439
           +VG+LA+R+KE+F RP  A +   DG   GSGRSI+G  +   +        G+++K GG
Sbjct: 181 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGG 240

Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499
           HAMAAGL++E   F      F +     +   +       DG L+ + + + +  +L  A
Sbjct: 241 HAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 300


>gi|319938090|ref|ZP_08012490.1| hypothetical protein HMPREF9488_03326 [Coprobacillus sp. 29_1]
 gi|319806996|gb|EFW03635.1| hypothetical protein HMPREF9488_03326 [Coprobacillus sp. 29_1]
          Length = 329

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 21/279 (7%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           M D  +L D  +    I + I N++KI+I GDYD DG  S + +   L +C       IP
Sbjct: 41  MHDKYLLHDLREVVHAIGEFIKNNKKIVIIGDYDADGVTSTSCLYLTLDYCGACVEYLIP 100

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
            R+ +GYG + +L++  I   A +I+T D G ++ +A++YA ++GI VIV DHH      
Sbjct: 101 HRVKNGYGLSHALVDDAIAINADVILTCDNGISALEAIRYAKSKGIIVIVTDHHTPGETL 160

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY--------RILRQDNKVPLNFDLLS 240
             A  +V+P   D      ++      + + + I         + L +       F L  
Sbjct: 161 PIADYIVHPALGD--YPFSNISGCQTAYKLCLGIIEECSPLKDKKLIKKAMRRKEFQLKD 218

Query: 241 LL-DLVALATVCDVVPL---------IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS 290
            L  L A++ V DV+PL         +  NR +++ G+ + ++  +  ++ +++ + ++ 
Sbjct: 219 YLFQLSAISIVTDVMPLASIDEDTAKVNENRKWLMDGIEMIKKNPDWRIQMMLKELGVNQ 278

Query: 291 PITAEN-LGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
               E  +G+ +GP +NA GR+ ++    + L +   +E
Sbjct: 279 KTFEETSIGFYVGPCLNAVGRLTDAGKAVQFLTAQTKEE 317


>gi|255526669|ref|ZP_05393574.1| phosphoesterase RecJ domain protein [Clostridium carboxidivorans
           P7]
 gi|296187174|ref|ZP_06855571.1| DHH family protein [Clostridium carboxidivorans P7]
 gi|255509649|gb|EET85984.1| phosphoesterase RecJ domain protein [Clostridium carboxidivorans
           P7]
 gi|296048209|gb|EFG87646.1| DHH family protein [Clostridium carboxidivorans P7]
          Length = 290

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 11/274 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           DP +L    +A RRI++A+   EKI+I+G YD+DG  +V+L++  L + + +    +P+ 
Sbjct: 18  DPFLLKGMKEALRRIIKAVNEREKIVIYGYYDLDGITAVSLLLLVLKYLNADVEYVVPED 77

Query: 131 IVDGYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           + + +G +  +++      GA+LIITV CG  S   ++   N GIDVI+ D+H+     +
Sbjct: 78  MDEDFGIDSDIIKNHVKFLGAKLIITVGCGVNSVSQVELCKNLGIDVIITDYHKCSKV-L 136

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
           P   ++NPN+         L A G+ F +   I               +   LDLV +  
Sbjct: 137 PETLIINPNQEGCKYTFKDLTAVGIAFKLAQSIS-------MYYQMKCISKYLDLVMIGI 189

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSINA 307
           +   + L G N+  V +G+       N GLKALI+  NI +          Y I P   +
Sbjct: 190 ISRNISLTGENKIMVSQGMYHLNYTNNYGLKALIKIHNIVNINKESICKLAYNIVPVSKS 249

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
              +  + +   L  +      E +A  L    +
Sbjct: 250 RRNVDNARIAVELFTTASMDRAEQIAKYLKNETK 283


>gi|94988416|ref|YP_596517.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS9429]
 gi|94541924|gb|ABF31973.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus
           pyogenes MGAS9429]
          Length = 445

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
                L   D QE + +A+ +   N+ R+ +   + +QA A V  Q        V V+  
Sbjct: 5   QPLSYLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPVQVLAQ 58

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435
             WHPG++G++A R+ E  G+    ++  ++G   GS RS+E  +I    +   +  +  
Sbjct: 59  AGWHPGVLGIVAGRIMETIGQTVVVLTI-DNGFAKGSARSLEAINI--FEALNGKRELFT 115

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495
             GGHA AAG+T+   N   L DF  +F               ID  L+   +++ ++  
Sbjct: 116 AFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSLDILKS 175

Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPL 553
           L+   PYG  +  PVF   + ++   R +     HL+    SQ   +   +AF   G+ L
Sbjct: 176 LDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ-GSQL 233

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            EF   +    + +   L VN+W G+   Q  ++DA  
Sbjct: 234 QEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 268


>gi|309799910|ref|ZP_07694114.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           infantis SK1302]
 gi|308116437|gb|EFO53909.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           infantis SK1302]
          Length = 141

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 1/134 (0%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           M DP +L D +KA  RI  AI   E I+I+GDYD DG  S +++   L        +Y+P
Sbjct: 1   MHDPYLLHDMEKAVERIRHAIEQGELILIYGDYDADGMTSASIVKESLEQLGAECLVYLP 60

Query: 129 DRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
           +R  DGYGPN S+ + FI +    LI+TVD G   ++A+  A + G+DVIV DHH +   
Sbjct: 61  NRFTDGYGPNASVYKYFIEQQGVSLIVTVDNGVAGHEAIDLARSMGVDVIVTDHHSIPEV 120

Query: 188 EIPAYALVNPNRLD 201
              AYA+++P    
Sbjct: 121 LPDAYAIIHPEHPG 134


>gi|297521152|ref|ZP_06939538.1| ssDNA exonuclease RecJ [Escherichia coli OP50]
          Length = 194

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 5/177 (2%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  +      N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
            G +S+  +++A + GI VIV DHH        A A++NPN  D       L   GV
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGV 194


>gi|167720340|ref|ZP_02403576.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia
           pseudomallei DM98]
          Length = 196

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 7/192 (3%)

Query: 27  INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85
                A+  +H +  ++AR+   R + S    +     ++  L+P P  L  C +AA  +
Sbjct: 11  PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
             A+    K+++  DYD DGA + A+ +R L       +  +P+R   GYG  P ++E  
Sbjct: 65  ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
                 L+ITVD G  S D +  A  +GIDV+V DHH        A A+VNPN+      
Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184

Query: 206 QGHLCAAGVVFL 217
             H+   GV+F 
Sbjct: 185 SKHIAGVGVMFY 196


>gi|258545643|ref|ZP_05705877.1| single-stranded-DNA-specific exonuclease RecJ [Cardiobacterium
           hominis ATCC 15826]
 gi|258519110|gb|EEV87969.1| single-stranded-DNA-specific exonuclease RecJ [Cardiobacterium
           hominis ATCC 15826]
          Length = 269

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 129/283 (45%), Gaps = 18/283 (6%)

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            + G  LL+++D Q  +  A + D  N++R+ +E+  +++A  +V           +   
Sbjct: 1   MSDGVALLLAEDWQTAQDYAQQSDEKNRDRKALENEAVQEAARQVSPAL------PLAAA 54

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA--VE 430
               WH GI+G+LAARLK +F RP+   +   EDG    S RS+    + ++++ A    
Sbjct: 55  YDPAWHEGIIGILAARLKSRFARPALVATDSNEDGWIKASLRSVSAVPLHELLNDAARHL 114

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
            G  ++ GGHA AAGL+V+R ++  L +   +         +      IDG L A+ +N+
Sbjct: 115 PGEALRYGGHAAAAGLSVKREHYPALIEAINRAFLETYGTTVPPEPVYIDGELPAALLNL 174

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY 549
                LE   P+GA  P PVFA P  ++   R++  AH ++            A  F   
Sbjct: 175 DWARYLERLEPWGASLPVPVFANP-FEVLDCRLLGSAHTRLVLREMHSGNAYNASWFFHT 233

Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
                       G R+ +   L VN + G +R  L V  A P+
Sbjct: 234 ADY-------RPGTRLRIAYQLQVNRFYGDERLSLLVQHAQPL 269


>gi|217031568|ref|ZP_03437073.1| hypothetical protein HPB128_21g126 [Helicobacter pylori B128]
 gi|216946768|gb|EEC25364.1| hypothetical protein HPB128_21g126 [Helicobacter pylori B128]
          Length = 211

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 10/195 (5%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S  +M +F    +     + I
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186
           P+R +DGYG +   +EK     A LIITVD G ++++  ++   +   +I+ DHH     
Sbjct: 83  PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEVARFCKEKNYTLIITDHHCLHHD 139

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
           E   AYA++NP + D    Q  +C A V F +   I+++L ++           LL L  
Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194

Query: 247 LATVCDVVPLIGLNR 261
           +AT+ D++PL   NR
Sbjct: 195 VATIADMMPLTFFNR 209


>gi|163760326|ref|ZP_02167409.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea
           phototrophica DFL-43]
 gi|162282725|gb|EDQ33013.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea
           phototrophica DFL-43]
          Length = 152

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/149 (45%), Positives = 90/149 (60%)

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
           MAAGLT+E+V  G L  FF++ A + V  L      KIDG L AS V + L DM+E AGP
Sbjct: 1   MAAGLTIEKVRLGDLRSFFEEEAADTVAQLDAAHRLKIDGALAASGVTLDLADMIERAGP 60

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSR 561
           +GAG+  PVFA PNH L  +RVV   H+++T    D   L  IAFR   T +G  L+  R
Sbjct: 61  FGAGHSQPVFAVPNHILSDVRVVGQNHVKLTLSGPDGGKLNGIAFRAADTEMGAVLLGGR 120

Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           G   H  G + V++W+G +R Q+RV DA+
Sbjct: 121 GLAFHFAGSISVDHWQGVRRVQIRVTDAA 149


>gi|330883133|gb|EGH17282.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 273

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 95/272 (34%), Positives = 146/272 (53%), Gaps = 5/272 (1%)

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS- 290
               +L  LLDLVAL +V DVVPL   NR  V +GLM  R  +  PGL+A++E       
Sbjct: 3   RAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAGRARPGLRAILEVARREPS 62

Query: 291 PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM 350
            IT+ +LG+++GP +NA GR+ + +LG   L+ DD      +A++LD LNQ+R+ +E  M
Sbjct: 63  RITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAREMAVQLDELNQDRKSIEQGM 122

Query: 351 LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI 410
             +A A++     +     + + + + WH G++G+LA+RLKE++ RP+ A +   +G   
Sbjct: 123 QREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKERYHRPTIAFASAGEGVLK 181

Query: 411 GSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468
           GS RS+ GF I   +    A    ++ K GGHAMAAGL++   NF    + F       +
Sbjct: 182 GSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSLPEENFPAFAEAFDLEVRRQL 241

Query: 469 PALITTPVFKIDGVLNASAVNIALIDMLESAG 500
                T     DG L     ++ L   L +AG
Sbjct: 242 DEQDLTGRLLSDGSLAVEEFHLELARALRNAG 273


>gi|150016416|ref|YP_001308670.1| phosphoesterase domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902881|gb|ABR33714.1| phosphoesterase, RecJ domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 291

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 12/273 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P IL   +KA  R+  A+ N +KI+++G Y+VDG  +V+ ++  L + + +    I DR
Sbjct: 18  NPFILKGMNKAIERLALAVNNRQKIVVYGTYNVDGICAVSSLILVLRYLNADVEYLIYDR 77

Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
                  N   ++  ++  GA+L+IT+  G  S + ++     GID+I++++ +     +
Sbjct: 78  QEADARINSVDIKNNVDFLGAELLITLGVGLKSKEEVELCKKLGIDLIILENEESD--LV 135

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
             Y  +NPN+        +L  +G+ F ++  I               +   LDL+ +  
Sbjct: 136 NDYIYINPNQKGCQYRYKNLSTSGLTFKLMQAIA-------IYYNMKSINKYLDLILIGI 188

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINA 307
               VP  G N   + +G        N GL+++IE  ++         N+   I P I A
Sbjct: 189 QWAKVPSKGENGVLIKEGNKFLMNTNNNGLRSIIEFNSLEEFNNDGINNIIEFIIPPIGA 248

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340
            G +  + +   LL ++D    + +   L  L 
Sbjct: 249 VGVMDNARIVLELLTTNDKDRADQIVKYLYRLK 281


>gi|312864801|ref|ZP_07725032.1| DHHA1 domain protein [Streptococcus downei F0415]
 gi|311099928|gb|EFQ58141.1| DHHA1 domain protein [Streptococcus downei F0415]
          Length = 406

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 10/235 (4%)

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
               V+  + WHPG++G++A RL EK  +P   ++  EDG+  GS RS+E  +I    + 
Sbjct: 8   KPAQVLAKEGWHPGVLGIVAGRLLEKLSQPVILLNI-EDGEAKGSARSVEAVNI--FEAL 64

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
                I    GGHA AAG+T+   N  +L D    +  +            ID  L  + 
Sbjct: 65  NPHREIFEAFGGHAGAAGMTLAVENLDQLSDTLCSYILDKGLDQAGKNSLVIDEELQLAD 124

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIA 545
           +++  I  LE   P+G  N  PVF   N ++   R +     HL++   +Q       +A
Sbjct: 125 LSLETIQSLEKLAPFGMDNRKPVFLLRNFQVLQSRTMGQNGAHLKLKL-AQGGAEFGLVA 183

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
           F      L +   Q+ G  + +   L VN W G    QL ++DA          +
Sbjct: 184 F--SQGSLAQDFAQASG--LELAVTLSVNKWNGHTSLQLMLVDARVQGVQLIDIR 234


>gi|255652456|ref|ZP_05399358.1| hypothetical protein CdifQCD_19906 [Clostridium difficile
           QCD-37x79]
          Length = 566

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/493 (19%), Positives = 183/493 (37%), Gaps = 33/493 (6%)

Query: 42  IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101
           ++  VL NR +        LN  I     D    T+ D+A   +++ I N+ KI I  D 
Sbjct: 13  VLNTVLKNRGLDNQKINWLLNADILN-WEDYNNYTNIDRAYNCLLKNIRNNNKIGILVDT 71

Query: 102 DVDGAASVALMMRFLS-HCSVNANMYIPDRIV-DGYGPNPSLMEKFINEGAQLIITVDCG 159
           DVDG  S +++  F+      +   YI        +G    +M+K I +  +L+IT D  
Sbjct: 72  DVDGYCSSSIIYMFIKFDLQYDNVYYIQHTEKAKVHGLTKEVMDKVIEDNTKLLITPDSS 131

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
           S ++         GID I +DHH     ++P  +++  N+  ++        A V +  +
Sbjct: 132 SENFKEQIELNRNGIDFIALDHHMYDLTKVPDTSIIINNKDGEV-ENIDGSGAMVTYKFI 190

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             I   +  D            +DL  +A + D + +  L   Y+           NP +
Sbjct: 191 RYIVDKVNLDIGY-------KYIDLANVANISDSMDMRSLENRYIFNIGKQVNHITNPLI 243

Query: 280 KALIERVNISSPITAENLGYMIGPSINAGGRIGES------------NLGSRLLISDDSQ 327
            + +  + I + +  +N+ + I P INA  R G                 +    S    
Sbjct: 244 LSFVHDLKIKNYLKIDNVVWGISPIINAIIRNGTIEDKELLFRAFIGEEKTITYKSKGEI 303

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           + + L   +  + +N +  +  + ++A  K   +   ++   VI+++ +     + GL+A
Sbjct: 304 KKQKLQDAIIRIGKNYKRKQKDITDKAI-KGNVKLFSVENDKVILIDSNSIDAKVTGLVA 362

Query: 388 ARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
            +    F +P   I   +      GS R     D     S  V+  +     GH  + G 
Sbjct: 363 NKFMNVFNKPILMIRESDNKNNYTGSVRCPNYID--NFKSICVDSKLFNWCKGHESSFGY 420

Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA-VNIALIDMLESAGPYGAG 505
              + N  +   +      NI         F  D  +N +  + I  ++ +     +   
Sbjct: 421 EFPKKNINKFIKYTNDKFKNITITSNVEVDFVFDSNININDLICIGELEDI-----WCGT 475

Query: 506 NPNPVFAFPNHKL 518
              P F   + ++
Sbjct: 476 IERPKFIIKDLRI 488


>gi|187778358|ref|ZP_02994831.1| hypothetical protein CLOSPO_01950 [Clostridium sporogenes ATCC
           15579]
 gi|187771983|gb|EDU35785.1| hypothetical protein CLOSPO_01950 [Clostridium sporogenes ATCC
           15579]
          Length = 292

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L   D+A +RIV+A+ + EKI+++G YD DG A+++L++
Sbjct: 5   VDNLQWYKNPKVN----NPFLLNGMDRALKRIVKAVNHREKIVLYGYYDFDGIAAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSSSEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E+  +  +  PN         HL A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKEKPKSTVIC-PNENSCSYPFKHLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   +   N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKEENLYIVKEGLESLQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTQKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|237667839|ref|ZP_04527823.1| phosphoesterase, RecJ domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237656187|gb|EEP53743.1| phosphoesterase, RecJ domain protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 292

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 115/275 (41%), Gaps = 12/275 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P IL   +KA  R+  A+ N +KI+++G Y+VDG  +V+ ++  L + + +    I DR
Sbjct: 18  NPFILKGMNKAIERLALAVNNRQKIVVYGTYNVDGICAVSSLILVLRYLNADVEYLIYDR 77

Query: 131 IV-DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
              D    +  + +     GA+L+IT+  G  S + +      GID+IVI++       +
Sbjct: 78  QENDARINSVDIKDNVDFLGAELLITLGVGLKSQEEVDLCKTLGIDLIVIENEISD--TV 135

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
             Y  +NPN+         L  +G+ F ++  I               +   LDL+ +  
Sbjct: 136 NDYIYINPNQKGCQYRYKDLSTSGITFKLMQAIA-------IYYNMKSINKYLDLILIGV 188

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINA 307
                   G N   + +G        N GL+++IE  +I          +   + P I A
Sbjct: 189 KWSRGSAKGENGILIKEGNKFLMNTNNNGLRSIIEFNDIKEFDDCGVNKIIESLIPPIGA 248

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            G    + +   LL ++D      +   L  L +N
Sbjct: 249 VGITDNARIVLELLTTNDKDRTNQIVKYLYSLKKN 283


>gi|218672850|ref|ZP_03522519.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           GR56]
          Length = 131

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/130 (43%), Positives = 81/130 (62%)

Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523
           A   V  L+     KIDG + AS   + LID LE+AGPYG+G+  P+FA P H+++  R+
Sbjct: 2   AARTVANLVANETLKIDGAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARL 61

Query: 524 VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
           V   H+++T E+ D   L  IAFR   T LG  L+ SRG  +HV G L  ++++G++R Q
Sbjct: 62  VGEKHVKVTLEAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQ 121

Query: 584 LRVLDASPVE 593
           LRV DA+P +
Sbjct: 122 LRVCDAAPAK 131


>gi|153939198|ref|YP_001392339.1| DHH domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152935094|gb|ABS40592.1| DHH domain protein [Clostridium botulinum F str. Langeland]
 gi|295320331|gb|ADG00709.1| DHH domain protein [Clostridium botulinum F str. 230613]
          Length = 292

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L   DKA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLEWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRATVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|322382947|ref|ZP_08056779.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153067|gb|EFX45525.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 416

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 9/183 (4%)

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482
              +      +L   GGH  AAG+T+++ +   L       A  ++      PV + D  
Sbjct: 1   MYENLTACRELLEHFGGHRSAAGMTIKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAA 60

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET 540
            +   V +  I+ L+   P+GA NP+P F   N +L  +R++     H+++       E+
Sbjct: 61  CHLKDVPLGWIEQLQKLEPFGASNPSPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGES 120

Query: 541 ---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597
              ++A+ F           + S   R+ V G L +N W G +R QL + D    E   F
Sbjct: 121 TVQIEALGFGKAHLS----ELISPTARLDVLGELGINEWNGIRRPQLTLKDLRITEIQLF 176

Query: 598 AKK 600
             +
Sbjct: 177 DWR 179


>gi|322807362|emb|CBZ04936.1| single-stranded-DNA-specific exonuclease RecJ,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 292

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L+  DKA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLEWYKNPKVN----NPFLLSGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|170755270|ref|YP_001782696.1| DHH domain-containing protein [Clostridium botulinum B1 str. Okra]
 gi|169120482|gb|ACA44318.1| DHH domain protein [Clostridium botulinum B1 str. Okra]
          Length = 292

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L   DKA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLEWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|148381012|ref|YP_001255553.1| DHH domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932601|ref|YP_001385383.1| DHH domain-containing protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153935172|ref|YP_001388790.1| DHH domain-containing protein [Clostridium botulinum A str. Hall]
 gi|148290496|emb|CAL84624.1| putative single-stranded-DNA-specific exonuclease [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928645|gb|ABS34145.1| DHH domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931086|gb|ABS36585.1| DHH domain protein [Clostridium botulinum A str. Hall]
          Length = 292

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L   DKA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLQWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|170760080|ref|YP_001788381.1| DHH domain-containing protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407069|gb|ACA55480.1| DHH domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 292

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L   +KA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLQWYKNPKVN----NPFLLNGMEKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|168181751|ref|ZP_02616415.1| DHH domain protein [Clostridium botulinum Bf]
 gi|237796517|ref|YP_002864069.1| DHH domain-containing protein [Clostridium botulinum Ba4 str. 657]
 gi|182675214|gb|EDT87175.1| DHH domain protein [Clostridium botulinum Bf]
 gi|229262243|gb|ACQ53276.1| DHH domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 292

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L   DKA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLQWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRSTIICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|145631268|ref|ZP_01787041.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae R3021]
 gi|144983195|gb|EDJ90690.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae R3021]
          Length = 174

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R++        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           G +S+D + +   +GI V+V DHH         
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPKLCRQP 167


>gi|168179555|ref|ZP_02614219.1| DHH domain protein [Clostridium botulinum NCTC 2916]
 gi|226950490|ref|YP_002805581.1| DHH domain-containing protein [Clostridium botulinum A2 str. Kyoto]
 gi|182669867|gb|EDT81843.1| DHH domain protein [Clostridium botulinum NCTC 2916]
 gi|226842686|gb|ACO85352.1| DHH domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 292

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 54  IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113
           +D  + + NP +     +P +L++ DKA +RIV+A+   +KI+++G YD DG ++++L++
Sbjct: 5   VDNLEWYKNPKVN----NPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60

Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172
             L   + +   +IPD + + +  N + +E  I   GA LIITV CG  S   ++     
Sbjct: 61  LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120

Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232
           G+D+I+ D H+   E  P   ++ PN         +L A+G+ + ++  +          
Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172

Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291
                    LDLV L T+ +   + G N   V +GL   +   N GLKAL+      +  
Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232

Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338
           I   +L  +            +I  + +   L  + +      +A  L  
Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282


>gi|219685870|ref|ZP_03540677.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii
           Far04]
 gi|219672600|gb|EED29632.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii
           Far04]
          Length = 519

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%)

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265
                   +   +  + Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  + 
Sbjct: 133 YFRYKEVAIKDKLYYIFYNIIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILK 191

Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
            GL     +    +  L++  NI     IT+ ++ Y I P +N+ GR+ ++++    L++
Sbjct: 192 AGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLA 251

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           DD  ++E    ++  +N+ R+  E             +    +    IV        GI 
Sbjct: 252 DDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 306

Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443
             LA RL   + + +  ++ ++     GS RS    +  K +   +   +++  GGH  A
Sbjct: 307 SRLATRLSAYYQKVAIFLTKQD-NIIKGSIRSNNKIN-SKALISTIPSHLIINSGGHKAA 364

Query: 444 AGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502
           AG T+            +     +            ID ++  +    +L   +E   PY
Sbjct: 365 AGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDAIVPKNLTKDSLFKTIEIFEPY 424

Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
           G     P+    N  LQ ++ ++      H+ M  +SQ+ +  +AI F   GT   E L 
Sbjct: 425 GYEFREPILMMENVYLQELKTIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 481

Query: 559 QSRGKRMHVTGHLCVNYW 576
               + + +   +  +++
Sbjct: 482 IKENQYLDIIFTINEDFY 499


>gi|145641181|ref|ZP_01796761.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae R3021]
 gi|145274018|gb|EDK13884.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae 22.4-21]
          Length = 174

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   D+A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           G +S+D + +  ++GI V+V DHH         
Sbjct: 135 GVSSFDGVAFLKDKGIRVLVTDHHLPPKLCRQP 167


>gi|255024236|ref|ZP_05296222.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL J1-208]
          Length = 261

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V++A
Sbjct: 1   DLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINLADVSVA 59

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRV 548
            I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F V
Sbjct: 60  FIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFGV 119

Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
                      S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 120 GDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 167


>gi|167957526|ref|ZP_02544600.1| single-stranded-DNA-specific exonuclease RecJ [candidate division
           TM7 single-cell isolate TM7c]
          Length = 283

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 16/294 (5%)

Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360
           +GP +NA GR+  +     +L++ D       + KL+ LN  RR ++ A+ E+A      
Sbjct: 2   LGPRMNAAGRLETAQHALDMLVARDGLAALEASEKLEELNSKRRGIQDAIFEEA----CV 57

Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420
           Q + +    V+VV  D W+ G++G++A++L E++ +P F I    + +  GS RS    D
Sbjct: 58  QAEKLANDRVLVVSSDGWNHGVIGIVASKLVERYKKPVFIIGERGE-EATGSARSFG--D 114

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN-IVPALITTPVFKI 479
                +    + I++KGGGH  AAG+T+     G       +F  +  +       + + 
Sbjct: 115 FSAADAVRAADDIIIKGGGHGAAAGVTLATEKIGDFRRRVNEFYDSLQLTNQERYLLPRA 174

Query: 480 DGVLN-ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ 536
           D  ++  S +N  L+D L    P+G GNP PV       + S+R +     H+++    +
Sbjct: 175 DVEIDDFSEINEELVDNLAKMEPFGNGNPEPVLKITTASVLSVRRIGADGQHVKLALRDK 234

Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           + + LQ +AF        E   +  G  +       VN W+G +  + R+L  +
Sbjct: 235 NGKVLQMLAFNA-----PEEFFREPGDEVVAWFQPTVNEWQGIRSVEGRLLHLA 283


>gi|145627799|ref|ZP_01783600.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.1-21]
 gi|144979574|gb|EDJ89233.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.1-21]
          Length = 174

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
             ++ R+   R +        L+ +++ ++ +P  L   ++A   +V+A    +KI+I G
Sbjct: 19  HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQQQKIVIVG 74

Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158
           D+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++TVD 
Sbjct: 75  DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134

Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           G +S+D + +   +GI V+V DHH         
Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPKLCRQP 167


>gi|315303284|ref|ZP_07873920.1| single-stranded-DNA-specific exonuclease RecJ [Listeria ivanovii
           FSL F6-596]
 gi|313628346|gb|EFR96843.1| single-stranded-DNA-specific exonuclease RecJ [Listeria ivanovii
           FSL F6-596]
          Length = 385

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 8/179 (4%)

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
            +      ++   GGH MAAGLT+   N   L    Q+ A  ++      P  +I+  +N
Sbjct: 1   KALDKHRKLMTAFGGHPMAAGLTLPAENLAELEAKLQEEAS-LLTEEDFRPALQIEERIN 59

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET-L 541
            + V++A I  LE   P+G  NP P+F     KL+  + +     HL+    +  ++T L
Sbjct: 60  LADVSVAFIAQLEKLAPFGMDNPKPIFLLEGMKLKGTKRIGADKTHLKTMLGTDGTDTPL 119

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            AI F V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 120 DAIGFGVGDL----VEKISPSADVDVVGELSINEWNHIKKPQLRMMDIRIAHWQLFDVR 174


>gi|213861333|ref|ZP_03385803.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 116

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDS 538
           DG L+A+ +++ +  +L  AGP+G   P P+F     +L   R+V   HL++  E     
Sbjct: 8   DGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGG 66

Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             L  IAF +  T   +    +  + + +   L +N +RG++  Q+ + D  P+
Sbjct: 67  PLLDGIAFNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 116


>gi|313608668|gb|EFR84510.1| single-stranded-DNA-specific exonuclease RecJ [Listeria
           monocytogenes FSL F2-208]
          Length = 380

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489
              ++   GGH MAAGLT+   N   L    Q+ A   +      P  KI+  +N + V+
Sbjct: 1   HRDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINLADVS 59

Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAF 546
           +A I  LE   P+G  NP P+F   N  L+  + +     HL+    +++++ TL +I F
Sbjct: 60  VAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGF 119

Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
            V           S    + V G L +N W   K+ QLR++D        F  +
Sbjct: 120 GVGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 169


>gi|217031567|ref|ZP_03437072.1| hypothetical protein HPB128_21g125 [Helicobacter pylori B128]
 gi|216946767|gb|EEC25363.1| hypothetical protein HPB128_21g125 [Helicobacter pylori B128]
          Length = 290

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 21/299 (7%)

Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
              V     + A ++ + I P IN+ GR+ ++ +    L +++ Q+   L  +L   N  
Sbjct: 6   QREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMK 65

Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402
           R++++  + E+A    +          +IV   D WH G++G++A++L E   +PS   +
Sbjct: 66  RKMIQQQVFEEAFKHAMV------GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFT 119

Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462
           F+E G   GSGRS    D+  + +      +L+  GGH  A GL+V + N   L +  + 
Sbjct: 120 FKE-GVYKGSGRSSSNIDL--IDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLEN 176

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
           F   I+P     P       L    ++  L++++E+  PYG  NP P+F   N ++   +
Sbjct: 177 FDFKILPFCEKEPPLT----LALKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEK 232

Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581
           ++  +H  + F+ ++    +AI F               G+++     + ++ +    +
Sbjct: 233 IIKESHQVLRFKDKECVK-EAIYFNTERF-------LKAGEKVSAIFSVELDEYSNEPK 283


>gi|145627797|ref|ZP_01783598.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.1-21]
 gi|144979572|gb|EDJ89231.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.1-21]
          Length = 140

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518
           FF +   + +       V   DG LN++  N+   ++++S G +G G P P F     K+
Sbjct: 7   FFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKI 65

Query: 519 QSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575
              R +     HL+M  E  Q    L AIAF +      +  +    K+  +   L +N 
Sbjct: 66  LDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLAYKLDINE 121

Query: 576 WRGSKRCQLRVLDASPVE 593
           +RG++  QL V    P++
Sbjct: 122 FRGNRSLQLLVDYIEPID 139


>gi|167957072|ref|ZP_02544146.1| single-stranded-DNA-specific exonuclease RecJ [candidate division
           TM7 single-cell isolate TM7c]
          Length = 109

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 2/102 (1%)

Query: 45  RVLVNRNVSIDYAKD-FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103
           ++LV R ++   A++ FL P    +  DP +L D +KA  R+ QA    EKI+I+GDYD+
Sbjct: 6   KILVARGLTTRAAREAFLRPDYAAVKHDPFLLLDMEKAVARLKQARQQGEKIVIYGDYDI 65

Query: 104 DGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK 144
           DG ++ AL++         + + +IP+R V+GYG     ++K
Sbjct: 66  DGLSATALLLDAFDKFGFEDVDAFIPNRFVEGYGMTMGAVDK 107


>gi|254469690|ref|ZP_05083095.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp.
           JE062]
 gi|211961525|gb|EEA96720.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp.
           JE062]
          Length = 140

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519
             +     V          IDGVL  +  N++L+DMLE AGPYGA +  PVFA P+  ++
Sbjct: 1   MTEQLGEDVEQASADHELTIDGVLTPAGANLSLLDMLEQAGPYGASHAEPVFALPSVPIK 60

Query: 520 SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579
             +VV   H+ +T    D   L+AIAF+    P G+ L+QSRGK +H+ G L V+ W+G 
Sbjct: 61  FSKVVGQGHVSVTLGGNDGTNLKAIAFKAEDQPHGKALLQSRGKPLHIAGSLSVDTWQGQ 120

Query: 580 KRCQLRVLDAS-PVEGH 595
            +  LR++D + P +G 
Sbjct: 121 AKPSLRIIDVADPSKGQ 137


>gi|256004892|ref|ZP_05429866.1| phosphoesterase DHHA1 [Clostridium thermocellum DSM 2360]
 gi|255991202|gb|EEU01310.1| phosphoesterase DHHA1 [Clostridium thermocellum DSM 2360]
          Length = 445

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           +A K+D LN  R+ ++ +++++A   V T+    +  +++V+  + WH GI+G+ A R+ 
Sbjct: 1   MAEKIDSLNTERKRVQQSIVDEAVEMVETRK---KNKTILVLYKEYWHHGIIGIAAGRIC 57

Query: 392 EKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450
           E + +P+   S +EDG   +GS RSIE  +I +++      G L+K GGH+ AAGL++ +
Sbjct: 58  ELYRKPAILFSLKEDGITAVGSARSIEEVNIYELIKEC--SGKLLKFGGHSQAAGLSIRK 115

Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510
            +        +  A N             D  L    +N  L D ++SAGPYG G   P 
Sbjct: 116 DDIEEFISQIEMEAENRYFIKDMVN-VNADMELGIEDINEELYDRIQSAGPYGEGFEAPC 174

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI-AFRVYGTPLGEFLMQSRGKRMHVTG 569
           F   N  + S R+    H  M  E Q    + A+  F    +          G+   VT 
Sbjct: 175 FCIRNVIVLSDRMTEKKHHIMVLEDQKGNRIPAVKWFGEDES--------FEGRCFDVTC 226

Query: 570 HLCVNYWRGSKRCQLRVLDA 589
            +  N +      QL +   
Sbjct: 227 RIGRNNYSKDAGIQLTLEYM 246


>gi|187933615|ref|YP_001885228.1| DHH domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721768|gb|ACD22989.1| DHH domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 287

 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 12/275 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P IL   +KA  R+V A+ N +KI+++G  +VDG  + A ++  L + + +    I D 
Sbjct: 18  NPFILKGMNKALERVVSAVNNRKKIIVYGTSNVDGICATASLILVLKYLNADVEYLIYDE 77

Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
              G   N   ++  ++  GA+L+IT+  G  S + +      GI++IV+++ +   + I
Sbjct: 78  ENGGDKLNSKDIKNNVDFLGAELLITLGLGLESQEEIDLCKKLGINLIVLENKES--KFI 135

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
             Y  +NPN+         L  + + F ++  I               +   LDL+ +  
Sbjct: 136 DEYIYINPNQKGCQYRYKDLSISALTFKLMQSIA-------IYYNMKSINKYLDLILMGV 188

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY--MIGPSINA 307
                P+ G N  ++ +G        N GL++++E  NI              I P+I  
Sbjct: 189 KFINTPIKGENGVFIKEGNKFLFNTNNNGLRSVMEFNNIMECDCYAMDSMIEFITPTIGP 248

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            G +  + +   LL +DD    + +   L    +N
Sbjct: 249 VGIMDNARIVLELLTTDDKDRADQIVKYLYSSKKN 283


>gi|325923456|ref|ZP_08185113.1| single-stranded DNA-specific exonuclease [Xanthomonas gardneri ATCC
           19865]
 gi|325546064|gb|EGD17261.1| single-stranded DNA-specific exonuclease [Xanthomonas gardneri ATCC
           19865]
          Length = 169

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 9/171 (5%)

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483
               A   G++ K GGHAMAAGL+++          F+    ++V A +       DG L
Sbjct: 4   AAVDARHPGLIQKFGGHAMAAGLSMDHAALATFEQAFRSQVQSMVDASLLHAELHSDGEL 63

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQ 542
            A  ++    + L  AGP+G G P P+F     ++   RV+   HL++T       E L 
Sbjct: 64  AAHELDHLHAEALRVAGPWGQGFPEPLFDGR-FEVLQCRVLKERHLKLTLRCAGRAEPLN 122

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
           AI F  +            G+ + +   L  + +RG    QL V    P  
Sbjct: 123 AIHFNGWRG-------SEPGRMVRLAYRLVSDDYRGGTAVQLIVEHCEPAT 166


>gi|289803791|ref|ZP_06534420.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 106

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETL 541
           L+A+ +++ +  +L  AGP+G   P P+F     +L   R+V   HL++  E       L
Sbjct: 1   LSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLL 59

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             IAF +  T   +    +  + + +   L +N +RG++  Q+ + D  P+
Sbjct: 60  DGIAFNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 106


>gi|291533807|emb|CBL06920.1| hypothetical protein MHY_22920 [Megamonas hypermegale ART12/1]
          Length = 209

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484
            +    E  L+  GGH+ AAG T++           Q +A+  +      P+++++ VL 
Sbjct: 3   NALTYCEQDLMVYGGHSKAAGFTIDLAKLDDFISHMQTYANEHLTDEDLIPIYQVETVLT 62

Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQ 542
              + +  I+ L    P+G GNP P F   N  +     +     HL+  F   ++    
Sbjct: 63  PQDITMDFIEELSLLEPFGMGNPKPQFVCQNLLVTKSMKMGKENNHLRFNFAY-NNTQYT 121

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           AI + +              K + +     +N+W      Q ++ D  
Sbjct: 122 AIGWHMAD-----VADDINNKYVDILFQPELNHWNDHTYLQFKLSDLR 164


>gi|149183951|ref|ZP_01862331.1| hypothetical protein BSG1_19060 [Bacillus sp. SG-1]
 gi|148848337|gb|EDL62607.1| hypothetical protein BSG1_19060 [Bacillus sp. SG-1]
          Length = 344

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 7/140 (5%)

Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522
           FA   +      P+ ++D  +N   V+I  I+ LE   P+G GNP P        +  +R
Sbjct: 2   FAEEQLTEEDFIPLTELDASINLEEVDIETIESLEMLAPFGMGNPKPKLLIEGVSISGMR 61

Query: 523 VVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580
            +     HL+++ + +D  TL +I F +           S    + V G L +N W   +
Sbjct: 62  KIGGNQDHLKLSLQ-KDVYTLDSIGFGMGEF----ADHISPLSEISVIGELSINEWNNIR 116

Query: 581 RCQLRVLDASPVEGHHFAKK 600
           + QL + D +      F  +
Sbjct: 117 KPQLFLKDVTVDHWQLFDMR 136


>gi|1783377|gb|AAB41138.1| RecJ recombination protein [Chlamydophila caviae]
          Length = 268

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 7/245 (2%)

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388
            + +   LD +N+ R+ +E+ +      K+L    +I + + IV+  + WH  ++ +++A
Sbjct: 1   ADEIIQYLDKINRERQKIEADVFHDV-QKILKNKPEIVKQAAIVLSSNDWHARVIPIISA 59

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448
           RL + + +P   IS +  G G GS R+I  F +  ++       + +  GGH  AAG+ +
Sbjct: 60  RLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQKC--SSLFISYGGHDFAAGIII 116

Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508
                      F    ++ +          +D   +   ++  L+  ++   P+G GNP 
Sbjct: 117 NEDQVEAFRKKFIHLVNSSLKKDKAVLTLPLDAQADFDEIDHDLLSSIDLFEPFGKGNPM 176

Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568
           PVF    H+++  +++   HL++   +     L+ IAF +      E L  +  K + + 
Sbjct: 177 PVFYTIVHQVRYPKLLPGNHLKLYL-NHGERNLEGIAFGLGDRI--EALKANWNKPLELA 233

Query: 569 GHLCV 573
               +
Sbjct: 234 YTPRL 238


>gi|254518559|ref|ZP_05130615.1| phosphoesterase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226912308|gb|EEH97509.1| phosphoesterase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 288

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 11/273 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P IL + +KA   +V+AI N +KI+I+G  +VDG  +++ ++  L + + +    I D 
Sbjct: 23  NPFILKNMNKAIEHMVEAINNRKKIVIYGVPNVDGLCAISSLILVLKYLNADIEYIIHDE 82

Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
                  +  +       G QL+IT+    +S    +   + GID+IV+++ +V +E   
Sbjct: 83  ASSSGIISEDIKNNVSFLGGQLLITLGIDLSSEREEELCRDLGIDLIVLENKEVNNER-- 140

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
            Y  +NPN+        +L  +G+ F ++  I               +   LDL+ +   
Sbjct: 141 NYIYINPNQKGCQYRYKNLSISGLTFKLMQAIA-------IYYNIKSINKYLDLILIGEQ 193

Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM--IGPSINAG 308
              VPL G N   + +G        N GL++++   +I        L  +  I P+INA 
Sbjct: 194 WAEVPLKGENGVILKEGRKFLINTNNYGLRSIMNYYSIVEMDEECILKIIDVITPTINAV 253

Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
             +  + +   LL +      E +   L+    
Sbjct: 254 TMMDNARIIIELLTTTKKDRAEQITKYLNKSKM 286


>gi|18310922|ref|NP_562856.1| DHH domain protein [Clostridium perfringens str. 13]
 gi|18145604|dbj|BAB81646.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 284

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 13/272 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
            P  + + +KA  R+  AI N EKI+I+G  D+D   +++ +M  L + + +    +   
Sbjct: 18  SPFNIKNMNKAIERLASAINNREKIVIYGGCDLDSICAISSLMLILKYLNADVEYCVSSE 77

Query: 131 IVD-GYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
             +  Y  +     E     GA+L+ITV CG  + +         ID+I++++ +   + 
Sbjct: 78  HEEKNYDIDEYTLREDIAFLGAELLITVGCGLKNKEVENLCNRFNIDLIIMENKRT--KC 135

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           I     +NP+          L  +G+ F ++  I               +   LDL+ + 
Sbjct: 136 IYDSTYINPSEEKCSYRYKDLTNSGLTFKLMQAIA-------IYYNMKRINKYLDLILIG 188

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306
           +V   V   G N   + +G+   R   + GL A+    NIS         +   I P   
Sbjct: 189 SVSKNVKNKGENGIILKEGIQYLRYTNSIGLNAIKSFFNISDINIDSINKIVNEITPREG 248

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           A  +   + +   LL ++D    E +   +  
Sbjct: 249 AISKKDNAKIVVELLTTNDKDRAEQITKYIYN 280


>gi|110800381|ref|YP_696619.1| DHH domain-containing protein [Clostridium perfringens ATCC 13124]
 gi|168204877|ref|ZP_02630882.1| DHH domain protein [Clostridium perfringens E str. JGS1987]
 gi|168208640|ref|ZP_02634265.1| DHH domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|168214140|ref|ZP_02639765.1| DHH domain protein [Clostridium perfringens CPE str. F4969]
 gi|168215565|ref|ZP_02641190.1| DHH domain protein [Clostridium perfringens NCTC 8239]
 gi|169343786|ref|ZP_02864785.1| DHH domain protein [Clostridium perfringens C str. JGS1495]
 gi|182624418|ref|ZP_02952202.1| DHH domain protein [Clostridium perfringens D str. JGS1721]
 gi|110675028|gb|ABG84015.1| DHH domain protein [Clostridium perfringens ATCC 13124]
 gi|169298346|gb|EDS80436.1| DHH domain protein [Clostridium perfringens C str. JGS1495]
 gi|170663580|gb|EDT16263.1| DHH domain protein [Clostridium perfringens E str. JGS1987]
 gi|170713121|gb|EDT25303.1| DHH domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170714374|gb|EDT26556.1| DHH domain protein [Clostridium perfringens CPE str. F4969]
 gi|177910421|gb|EDT72798.1| DHH domain protein [Clostridium perfringens D str. JGS1721]
 gi|182382118|gb|EDT79597.1| DHH domain protein [Clostridium perfringens NCTC 8239]
          Length = 284

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 13/272 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
            P  + + +KA  R+  AI N EKI+I+G  D+D   +++ +M  L + + +    +   
Sbjct: 18  SPFNIKNMNKAIERLASAINNREKIVIYGGCDLDSICAISSLMLILKYLNADVEYCVSSE 77

Query: 131 IVD-GYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
             +  Y  +     E     GA+L+ITV CG  + +         ID+I++++ +   + 
Sbjct: 78  HEEKNYDIDEYTLREDIAFLGAELLITVGCGLKNKEVENLCNRFNIDLIIMENKRT--KC 135

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           I     +NP+          L  +G+ F ++  I               +   LDL+ + 
Sbjct: 136 IYDSTYINPSEEKCSYRYKDLTNSGLTFKLMQAIA-------IYYNMKRINKYLDLILIG 188

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306
           +V   V   G N   + +G+   R   + GL A+    NIS         +   I P   
Sbjct: 189 SVSKNVKNKGENGIILKEGIQYLRYTNSIGLNAIKSFFNISDINIDSINKIVNEITPREG 248

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           A  +   + +   LL ++D    E +   +  
Sbjct: 249 AISKKDNAKIIVELLTTNDKDRAEQITKYIYN 280


>gi|309807695|ref|ZP_07701634.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169069|gb|EFO71148.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 111

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 22  LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80
             ++  +    +  K+ +  I A++   R ++ D   DF LN     L  DP ++ D +K
Sbjct: 4   KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMEK 62

Query: 81  AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
              RI QAI   EKI ++GDYD DG  + ++M+  LS    +   +
Sbjct: 63  TVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVVFF 108


>gi|110803606|ref|YP_699216.1| DHH domain-containing protein [Clostridium perfringens SM101]
 gi|110684107|gb|ABG87477.1| DHH domain protein [Clostridium perfringens SM101]
          Length = 284

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 109/272 (40%), Gaps = 13/272 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
            P  + + +KA  R+  AI N EKI+I+G  D+D   +++ +M  L + + +    +   
Sbjct: 18  SPFNIKNMNKAIERLASAINNREKIVIYGGCDLDSICAISSLMLILKYLNADVEYCVSSE 77

Query: 131 IVD-GYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
             +  Y  +     E     GA+L+ITV CG  + +         ID+I++++ +   + 
Sbjct: 78  HEEKNYDIDEYTLREDIAFLGAELLITVGCGLKNKEVENLCNRFNIDLIIMENKRT--KC 135

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           I     +NP+          L  +G+ F ++  I               +   LDL+ + 
Sbjct: 136 IYDSTYINPSEEKCSYRYKDLTNSGLTFKLMQAIA-------IYYNMKRINKYLDLILIG 188

Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306
           +V   V   G N   + +G+   R   + GL A+    +IS         +   I P   
Sbjct: 189 SVSKNVKNKGENGIILKEGIQYLRYTNSIGLNAIKSFFDISDINIDSINKIVNEITPREG 248

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338
           A  +   + +   LL ++D    E +   +  
Sbjct: 249 AISKKDNAKIVVELLTTNDKDRAEQITKYIYN 280


>gi|188590091|ref|YP_001920358.1| DHH domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188500372|gb|ACD53508.1| DHH domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 287

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 12/275 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P IL   +KA  ++V A+ N +KI+I+G  +VDG  + A ++  L + + +    I D 
Sbjct: 18  NPFILKGMNKALEKVVSAVNNRKKIIIYGTSNVDGICATASLILVLKYLNADVEYLIYDE 77

Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
                  N   ++  ++  GA+L+IT+  G  S + +      GI++IV+++ +   + I
Sbjct: 78  ENGRDKLNSKDIKNNVDFLGAELLITLGLGLESQEEIDLCEKLGINLIVLENKES--KFI 135

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
             Y  +NPN+         L  + + F ++  I               +   LDL+ +  
Sbjct: 136 DEYIYINPNQKGCQYRYKDLSISALTFKLMQSIA-------IYYNMKSINKYLDLILMGV 188

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINA 307
                P+ G N  ++ +G        N GL++++E  NI        +++   I P+I  
Sbjct: 189 KFIDTPIKGENGVFIKEGNKFLFNTNNNGLRSVMEFNNIMECDCHAMDSMIEFITPTIGP 248

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            G +  + +   LL +DD    + +   L    +N
Sbjct: 249 VGIMDNARIVLELLTTDDKDRADQIVKYLYSSKKN 283


>gi|270618970|ref|ZP_06221784.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
 gi|270317888|gb|EFA29219.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
          Length = 154

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGY 135
             D+A   +V+A    +KI+I GD+D DGA S AL +  L      + +  +P+R   GY
Sbjct: 2   GIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGY 61

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
           G +  + E  I +G QL++TVD G +S++ + +   +GI V+V DHH       PA A+V
Sbjct: 62  GLSIPVAEMAIEKGVQLLMTVDNGVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIV 121

Query: 196 NPN 198
           NPN
Sbjct: 122 NPN 124


>gi|290954338|ref|ZP_06558959.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312225|ref|ZP_06803024.1| single-stranded-DNA-specific exonuclease [Francisella tularensis
           subsp. holarctica URFT1]
          Length = 197

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
                 A+++  R   I+  +  LN SI+ L   P +  D +KA  R+ QA+ N+E I +
Sbjct: 20  GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQAVQNNEIIGL 78

Query: 98  FGDYDVDGAASVALMMRFL-SHCSV---NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151
             D+D DG  S A++   L             YI  R+ +GYG + SLM + +       
Sbjct: 79  ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQG 207
           LIIT D GST    +      GID I+ DHH +  E  P    A++NP +        
Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDK 196


>gi|251779361|ref|ZP_04822281.1| DHH domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083676|gb|EES49566.1| DHH domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 287

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 119/275 (43%), Gaps = 12/275 (4%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +P IL   +KA  ++V A+ N +KI+I+G  +VDG  + A ++  L + + +    I D 
Sbjct: 18  NPFILKGMNKALEKVVSAVNNRKKIIIYGTSNVDGICATASLILVLKYLNADVEYLIYDE 77

Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
                  N   ++  ++  GA+L+IT+  G  S + +      GI++IV+++ +   + I
Sbjct: 78  ENGRDKLNSKDIKNNVDFLGAELLITLGLGLESQEEIDLCEKLGINLIVLENKES--KFI 135

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
             Y  +NPN+         L  + + F ++  I               +   LDL+ +  
Sbjct: 136 DEYIYINPNQKGCQYRYKDLSISALTFKLMQSIA-------IYYNMKSINKYLDLILMGV 188

Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMI-GPSINA 307
                P+ G N  ++ +G        N GL++++E  NI      A +       P+I  
Sbjct: 189 KFIDTPIKGENGVFIKEGNKFLFNTNNNGLRSVMEFNNIMECDFHAMDSMIEFITPTIGP 248

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342
            G +  + +   LL +DD    + +   L    +N
Sbjct: 249 VGIMDNARIVLELLTTDDKDRADQIVKYLYSSKKN 283


>gi|86651823|gb|ABD14428.1| RecJ [Anaplasma centrale]
          Length = 135

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517
           +    F            V    G+L A AVN  L   L+   P+G GNP P F   N +
Sbjct: 3   EALYSFFLERFKHSDIQKVSYACGILTAGAVNFPLWRELQMLEPFGPGNPEPRFILKNVE 62

Query: 518 LQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577
           ++   V+  +H++    S D+  ++ + F+  GT  G  L+Q RG+ +H+ G + VN WR
Sbjct: 63  IRKPEVMGGSHVRC-LISGDNALVKGVCFKCIGTEQGTTLLQ-RGRCVHLLGKISVNQWR 120

Query: 578 GSKRCQLRVLDAS 590
           G++  Q  + DA+
Sbjct: 121 GNEYVQFVMDDAA 133


>gi|330720704|gb|EGG98939.1| Single-stranded-DNA-specific exonuclease RecJ [gamma
           proteobacterium IMCC2047]
          Length = 121

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 468 VPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA 527
           +         + DG L     ++ L   L  AGP+G G   P+F      +   R+V   
Sbjct: 1   MNEDALQAELQTDGALLGRECSMELAYALNQAGPWGQGFVQPMFEGE-FAISQQRLVGEK 59

Query: 528 HLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           HL++     +  ++  AIAF +           +  +R+ +   L +N +RG++  QL V
Sbjct: 60  HLKLQLVDEKSGQSHDAIAFFIDLEVWP-----NEARRVKLVYKLDINRFRGNESLQLMV 114

Query: 587 LDASPV 592
               P+
Sbjct: 115 EHLQPL 120


>gi|261883734|ref|ZP_06007773.1| YrvE [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 113

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 14  SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72
           S  RW      E       +     IP I A++L +R  V    A+ FL+     L  DP
Sbjct: 4   SKKRWRIQRPDE--AVIERLANGLNIPVISAKILASRGLVDPKAARSFLHMDDSSLH-DP 60

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118
            ++ D D A R I Q+I   EKI+I+GDYD DG  SV++++R L+ 
Sbjct: 61  YLMKDMDIAVRMIKQSIMEGEKILIYGDYDADGVTSVSVLLRALTR 106


>gi|329733227|gb|EGG69564.1| single-stranded-DNA-specific exonuclease RecJ family protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 388

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 9/204 (4%)

Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458
             I   +  +    G +     +      +  + ++ K GGH MAAG+T++  N   L +
Sbjct: 3   TLILNIDREQNHAKGSARSIDQVSMFEILSAHQELIAKFGGHHMAAGMTMDIENIESLAE 62

Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518
              K+   +       PV ++D +L  + + I  I  +    P+G     P+F   +  +
Sbjct: 63  GLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIRDMNRLRPFGTDFSRPIFEMDDLSV 122

Query: 519 QSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
            S++ +     HL++T    +   L    F   G    E   +   + +++ G + +N W
Sbjct: 123 SSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHLEPELQDE---QPINILGSVQINEW 175

Query: 577 RGSKRCQLRVLDASPVEGHHFAKK 600
            G++  Q+ + D +  E      +
Sbjct: 176 NGNQSPQIIIQDIAMNEQQILDYR 199


>gi|270671933|ref|ZP_06222630.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
 gi|270316527|gb|EFA28378.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
          Length = 144

 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           MI GD+D DGA S AL +  L      + +  +P+R   GYG +  + E  I +G QL++
Sbjct: 1   MIVGDFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLM 60

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
           TVD G +S++ + +   +GI V+V DHH       PA A+VNPN          L   GV
Sbjct: 61  TVDNGVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGV 120

Query: 215 VFLVLVLIYRILRQDNKVP 233
            F +++ +    R+     
Sbjct: 121 AFYLMLAVRAKFRELGIFT 139


>gi|218670431|ref|ZP_03520102.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           GR56]
          Length = 247

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 139/237 (58%), Positives = 174/237 (73%), Gaps = 1/237 (0%)

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           + + I+ GA+LI+TVDCGSTS++AL  A  + IDV+VIDHHQV  E  P +ALVNPNR D
Sbjct: 2   INQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQVTHELPPCHALVNPNRED 61

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLN 260
           DLSGQGHLCAAGVVF+VLV   R+LR       L  DLL  LD+VALATVCDVVPL GLN
Sbjct: 62  DLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILAIDLLQWLDIVALATVCDVVPLKGLN 121

Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320
           RAYVVKGL+ AR Q N GL AL  +  ++ P+T  + G++IGP INAGGRIG++ LGSRL
Sbjct: 122 RAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIGPRINAGGRIGDAALGSRL 181

Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377
           L  DD+ E EM+A +LD LN+ R+ ME+ ML++AEA+ L +  D + ASVIV   + 
Sbjct: 182 LTLDDAGEAEMIAQRLDELNRERQAMEALMLQEAEAEALAEYGDGEGASVIVTAHEN 238


>gi|260889846|ref|ZP_05901109.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           hofstadii F0254]
 gi|260860452|gb|EEX74952.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia
           hofstadii F0254]
          Length = 296

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 18/305 (5%)

Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349
             IT  ++G+ I P  NA GRI  S       I +D  +L  +  ++   N+ RR +E+ 
Sbjct: 6   RNITTSDIGFFIAPIFNALGRIDNSKSVVNFFIQEDDFKLFSIIEEMKRANKIRRYLENE 65

Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409
           +  + E K+      +++   I ++  +WH G++G++ +R+  K+  P   IS  ++G G
Sbjct: 66  IYNELEEKIQR----LERPKYIFMKSRKWHSGVIGVVCSRISIKYNIPVILISI-KNGYG 120

Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
             S RSIEG +I  ++        L + GGH +AAG  V     G +    ++    I  
Sbjct: 121 KASCRSIEGINIFDILKSV--SDKLERFGGHDLAAGFLVSEKYLGEIEKHLRQRLA-IKN 177

Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529
                    +D  LN   +N   +  +    P+G  N  P F   +    ++    + + 
Sbjct: 178 RENVQKTLHVDAWLNIEYLNKRKLHEINRLSPFGLDNQEPNFMDSDVSFLNLTKFGINNR 237

Query: 530 QMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLR 585
               F  +++  +  I + +              K+  +        ++        +L+
Sbjct: 238 HFKGFVRKNNRIISVIGYNLGHKLKAN---NFYKKKFKIVYTP---IFKSGHSDLFIELK 291

Query: 586 VLDAS 590
           + D  
Sbjct: 292 IKDFK 296


>gi|149002292|ref|ZP_01827234.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759607|gb|EDK66598.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP14-BS69]
          Length = 305

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV- 524
             V          +D  L+  A+++  +   E   P+G  N  P+F   N +++S R + 
Sbjct: 2   KKVADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKPIFYIKNFQVESARTMG 61

Query: 525 -NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
              AHL++   S+   + + +AF             S+ K + +   L VN W G    Q
Sbjct: 62  AGNAHLKLKI-SKGEASFEVVAFGQGRW----ATEFSQTKNLELAVKLSVNQWNGQTALQ 116

Query: 584 LRVLDASPVEG-HHFAKK 600
           L ++DA  VEG   F  +
Sbjct: 117 LMMVDAR-VEGVQLFNIR 133


>gi|37522845|ref|NP_926222.1| hypothetical protein glr3276 [Gloeobacter violaceus PCC 7421]
 gi|35213847|dbj|BAC91217.1| glr3276 [Gloeobacter violaceus PCC 7421]
          Length = 662

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 107/593 (18%), Positives = 176/593 (29%), Gaps = 95/593 (16%)

Query: 17  RWVSLLGQEGI-NRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74
           RW        +     A+  ++      AR L +  +     A+ FL P    L   P  
Sbjct: 4   RWNPQPTPSHLHPEVRALVGEYG-----ARALGSLGIGDPQSARAFLWPERSPLGHCP-T 57

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVD---GAASVALMMRFLSHCSVNANMYIPDRI 131
             + ++AA+ I Q I   + I +      D    A +  L+   L               
Sbjct: 58  WPELERAAQWIAQTISEGKSITLQT---ADRFESAVAALLLQEALREAG----------- 103

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
                   +++         L+I V            A   G   I I+   +       
Sbjct: 104 -----TELTVVAGAQPVAQSLLIAVGS--------MPAAPPGCRTIAIEAR-LGEASGEG 149

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
              +N  +L        L  A V ++++  +   L Q N+ P       LL    +A + 
Sbjct: 150 LVALNALQLALDHPLRFLPEAAVAWMLVEAL---LGQLNRQPPPDRWADLLLAGCVAGLV 206

Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311
            +       R  V+ GL       +P L ALI               + +   ++A G  
Sbjct: 207 SLAHC----RPQVLAGLAQDGGGSHPLLAALISSHRRQI--------FKMAAPLDALGAR 254

Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
             + L        +    E  A    V+               E  +  +   +Q   V 
Sbjct: 255 ATAWLAGESDGGWEPLWREHEARIARVVQ--------------EGALAIESLGLQSQGVA 300

Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430
           V+    W    + L AARL  ++G     I+  E +    GSG + EG D+  + + A  
Sbjct: 301 VLARVHWPRQALSLAAARLAGRYGLAVVLIACPEAEALAHGSGYAPEGTDL--IAALAAL 358

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV--FKIDGVLNAS-- 486
             + V+ GG   A  L  E      L     +     V      P     ID        
Sbjct: 359 RPLWVEAGGRPEAVRLVCESRWVAALQRELGREIARRVARERLEPPVAIAIDAETTLDLP 418

Query: 487 -AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545
             ++ A    LE   P+G G P P  A  N++ Q     +  HL+     +         
Sbjct: 419 AELDRAF-HELERLAPFGPGRPRPRVAVRNYRPQWTLSRDGRHLECKIGPRTLRLRDG-- 475

Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHL---CVNYWRGSKRCQLRVLDASPVEGH 595
                    E   +     M +   +     N W G       +    P E  
Sbjct: 476 -------AEERARRQEAGLMELIFEMEPWEANLWWGR------LHAVQPAEAR 515


>gi|255018741|ref|ZP_05290867.1| hypothetical protein LmonF_15316 [Listeria monocytogenes FSL
           F2-515]
          Length = 223

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ 536
           I+  +  + V++A I  LE   P+G  NP P+F   N  L+  + +     HL+    ++
Sbjct: 1   IEEKIKLADVSVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATE 60

Query: 537 DSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           +++ TL +I F V           S    + V G L +N W   K+ QLR++D       
Sbjct: 61  ENDATLDSIGFGVGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQ 116

Query: 596 HFAKK 600
            F  +
Sbjct: 117 LFDVR 121


>gi|330874873|gb|EGH09022.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 94

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPL 553
            L +AGP+G   P P+F     +L   RVV   HL+M  +++  S  L  IAF V     
Sbjct: 1   ALRNAGPWGQHFPEPLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR--- 56

Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
            +       + + +   L +N +RG++  QL V+  +P
Sbjct: 57  -DIWPNPNIRWVELAYKLDLNEFRGNETVQLMVVHIAP 93


>gi|226323922|ref|ZP_03799440.1| hypothetical protein COPCOM_01699 [Coprococcus comes ATCC 27758]
 gi|225207471|gb|EEG89825.1| hypothetical protein COPCOM_01699 [Coprococcus comes ATCC 27758]
          Length = 181

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 17/171 (9%)

Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491
            +L K GGH MAAGL++   N  +      +   + +          ID  L    VN  
Sbjct: 10  HLLSKFGGHKMAAGLSMPEENLEQFRKEINE--KSGITPEDLNEKIAIDMQLPFECVNEK 67

Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVY 549
            I  L    P+G GN  PVFA    +++S R++      L++  +      + A+ F   
Sbjct: 68  FIGELAVLEPFGKGNARPVFAERQVQVESARILGKNKNVLKLQVKDLHGTRMDAMYFGDV 127

Query: 550 GTPLG-----------EFLMQSRGKRMHVT--GHLCVNYWRGSKRCQLRVL 587
            T +            E L++  G  + +    +  +N ++G +  Q+ + 
Sbjct: 128 NTFVEYVREKFGDIACECLLRGHGHGIVMAFTYYPDINEYQGVRTPQIVIQ 178


>gi|144897463|emb|CAM74327.1| Single-stranded-DNA-specific exonuclease [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 95

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558
            GP+GAGN  P FA    ++    VV   H+++  +S   + L+AIAFR   + +G  L+
Sbjct: 1   MGPFGAGNREPRFAVTGARVVKADVVGSGHIRIIAQSAGGQRLKAIAFRAADSEMGLTLL 60

Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             +G+  H+ G L V+ W+G+   QL + DA+  
Sbjct: 61  GGQGRTFHLAGTLRVDSWQGNNSVQLIIDDAAAA 94


>gi|256752578|ref|ZP_05493432.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748516|gb|EEU61566.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 108

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75
           +RW+    +     +  + + + +P I+A +L  R +++   K FLNP ++ L   P +L
Sbjct: 9   YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
               +A   I Q I + + I I+GDYDVDG  + +++   L 
Sbjct: 66  RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLK 107


>gi|297521588|ref|ZP_06939974.1| ssDNA exonuclease RecJ [Escherichia coli OP50]
          Length = 95

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTP 552
            +L  AGP+G   P P+F   + +L   R+V   HL++  E       L  IAF V    
Sbjct: 1   QLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 59

Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
             +    +  + + +   L +N +RG++  Q+ + +  P+
Sbjct: 60  WPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 95


>gi|145627798|ref|ZP_01783599.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.1-21]
 gi|144979573|gb|EDJ89232.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae
           22.1-21]
          Length = 254

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 7/254 (2%)

Query: 214 VVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           + F +++ +    R+          +   LLDLVAL T+ DVVPL   NR    +GLM  
Sbjct: 1   MAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRI 60

Query: 272 RRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           R +    G+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  + 
Sbjct: 61  RARHCRLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKA 120

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAA 388
             LA+ LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++
Sbjct: 121 RELALDLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSS 180

Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGL 446
           R+K+++ RP  A + + +G   GS RSIEG  +  ++         +++K GGHAMAAGL
Sbjct: 181 RIKDQYHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGL 240

Query: 447 TVERVNFGRLCDFF 460
           ++    F      F
Sbjct: 241 SIREEYFADFQHIF 254


>gi|332686622|ref|YP_004456396.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus
           plutonius ATCC 35311]
 gi|332370631|dbj|BAK21587.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus
           plutonius ATCC 35311]
          Length = 155

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501
           MAAGLT+   N   L  +           L       ID  +  + V++ALI  L+   P
Sbjct: 1   MAAGLTLSVENIILLKGYLFYCMKQQTINLDEKQEILIDMPIPVAEVSLALIKRLQLLAP 60

Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559
           +G  N  P+F F +  +Q+++ +     +L+   + +    L AIAF      +G+   +
Sbjct: 61  FGTKNAAPLFLFQDSMIQNVQQIGVNNNYLKFQLKDKQ-LVLDAIAF-----QMGKDKDE 114

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600
               ++ + G L +N WRG+ + Q+ V D        F  +
Sbjct: 115 FSNTQVTIVGKLGINEWRGNCKPQVLVTDFMVKNAQLFDLR 155


>gi|330683922|gb|EGG95690.1| conserved domain protein [Staphylococcus epidermidis VCU121]
          Length = 340

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%)

Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507
           ++  N   L D   ++   +       P  KID +L+ S + I  I  ++   P+G    
Sbjct: 1   MDIDNVEALRDGLNEWMARLSETTSLEPSKKIDVLLDESDITIKNIKDIQKLRPFGTDFN 60

Query: 508 NPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565
           +P+F   N  + S++ +     HL+MT       TL A+ +               G+ +
Sbjct: 61  SPLFEIQNMTINSLKAIGKEQNHLKMTLGD---STLPALFW----QNGAYATQLDNGQTV 113

Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590
           ++ G+L +N W G++  Q  V D +
Sbjct: 114 NLIGNLQINEWNGNQTPQFIVQDIA 138


>gi|305432544|ref|ZP_07401705.1| single-stranded-DNA-specific exonuclease [Campylobacter coli JV20]
 gi|304444255|gb|EFM36907.1| single-stranded-DNA-specific exonuclease [Campylobacter coli JV20]
          Length = 131

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 43  VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102
           + ++L +R       +  L+  +  L P P  L D  KAA RI +AI  +EKI I GDYD
Sbjct: 9   IRKILASR------FEKDLHTKLCDL-PLPCCLKDIYKAANRIKEAIDKNEKIAIVGDYD 61

Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162
           VDG  S  +M  F      +  + IP+R  DGYG N  ++ +       LIITVD G  +
Sbjct: 62  VDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118

Query: 163 YDALQYATNQ 172
           ++A +    +
Sbjct: 119 FEAAKLCKEK 128


>gi|221316434|ref|ZP_03598239.1| hypothetical protein BsubsN3_22235 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 233

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 18/247 (7%)

Query: 29  RALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88
           +   I+  +   DI+  +L NRN+       FLNP+    + +P  L + +  A  ++  
Sbjct: 2   KIKQISSYNG--DIIDTILKNRNIK--DIDTFLNPNSSEDL-NPFDLHNIELGANVLLAH 56

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDRIVDGYGPNPSLMEKFI 146
           +  ++ I I  D D DG +S +++ +++     +   + ++ DR    +G    + +K  
Sbjct: 57  LLINDHIGILVDADADGFSSASIIYQYIKKIEPDSHVSYFLHDR--KAHGLTDEISQKIA 114

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
           +    LII  D  S   D LQ     GID+IV+DHH+V         L+N    ++ S  
Sbjct: 115 DSSIDLIIIPDAASNDVDELQRLYYMGIDIIVLDHHEVDKMPTHG-ILINNQLDENKSTN 173

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN-RAYVV 265
            +L  AG+ +     + RIL              LLDLVA+  + D   +     R  V 
Sbjct: 174 KNLVGAGMAYKFCQALDRIL-------DTHYADDLLDLVAIGQIGDTSDISENEVRNLVF 226

Query: 266 KGLMVAR 272
           +GL    
Sbjct: 227 RGLETIN 233


>gi|300813750|ref|ZP_07094064.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512139|gb|EFK39325.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 189

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488
                L   GGH MA GL++++ NF        K A   +     T    ID  LN   +
Sbjct: 4   CIRDELEAFGGHKMACGLSIKKENFNNFNLNLNKNAK--LTRDDLTKKIYIDYPLNFPQI 61

Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546
           N+ LI  L    P+G  N  P+F   N K+  I +       +++  E  +     A+ F
Sbjct: 62  NMKLIQDLNKLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLED-NGVFQNALLF 120

Query: 547 RVYGTPLGE-------------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +     L +                 ++  ++ V   + VN +RG    +LR+     
Sbjct: 121 KDSNEFLKDLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGYSSIELRLKSYRV 178


>gi|315452914|ref|YP_004073184.1| single-stranded-DNA specific exonuclease [Helicobacter felis ATCC
           49179]
 gi|315131966|emb|CBY82594.1| single-stranded-DNA specific exonuclease [Helicobacter felis ATCC
           49179]
          Length = 433

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 167/422 (39%), Gaps = 47/422 (11%)

Query: 64  SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SV 121
           S+  L+     + D  +A   + QA+    +I++ GDYD DG +  AL++ F        
Sbjct: 22  SLDSLL----TMGDGARALELLHQALQEKRQIILGGDYDCDGMSGSALVLYFFKEVLDHP 77

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFIN---------------------EGAQLIITVDCGS 160
             N  IP R  D YG +  L E++                           L IT+D G+
Sbjct: 78  YVNYIIPRRNTDCYGMSVELFEQYAYKRRLVRTRYIRGQPTGGQALDFNHSLFITIDNGA 137

Query: 161 TSYDA-LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
           T  D+   +       +I+ DHH+     IPA        L D      +  A V +L++
Sbjct: 138 TIPDSVCDFLHAHNTPLILSDHHEFLEGRIPACDAFVHPLLSDDHPFKGISGACVGYLLM 197

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
           +   +  +          L  +  L  L+T+ D++ L       +V+ +    +   P  
Sbjct: 198 LAYAKHYKVK---MRLDQLQYMQVLAGLSTIGDMMDLSAPYNRQLVQRMDHTLKTQMPNS 254

Query: 280 KA-LIERVNISSPITAENLGYMIGPSINAGGRIGESN---LGSRLLISDDSQELEM-LAM 334
              L +     +P     L + I P INA GR+         + ++    S+E     A+
Sbjct: 255 IKALYQAHKYPTPYKLSALAWDIIPLINAVGRLDGIEGFCHCNLVVDLLASKEANPDYAL 314

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394
            L   NQ R+            + + +     Q+  +V  G R   G++G+LA +  E  
Sbjct: 315 LLVQTNQQRKEY---------IRTIKKTLKPTQSGGLVHAGGRIPRGLLGMLANQFLEGG 365

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454
           G  S    +E++     S RS E  D+ +++S   E+GI V+GGGH  A G+   R N  
Sbjct: 366 GHVSLCWRYEQESIE-ASLRSKE-ADLMEILSQLKEKGIDVQGGGHKQACGVVFARQNDF 423

Query: 455 RL 456
           + 
Sbjct: 424 QQ 425


>gi|322378512|ref|ZP_08052962.1| single-stranded-DNA specific exonuclease [Helicobacter suis HS1]
 gi|321149073|gb|EFX43523.1| single-stranded-DNA specific exonuclease [Helicobacter suis HS1]
          Length = 399

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 48/399 (12%)

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLM 142
           + +A+   ++I+I GDYD DG +  AL++ F        + N  IP R  D YG +  L+
Sbjct: 1   MREALNAQKQIIIGGDYDCDGMSGTALVLYFFKEVLHYPHINYIIPQRNTDCYGMSVELL 60

Query: 143 EKFINE---------------------GAQLIITVDCGSTSYDA-LQYATNQGIDVIVID 180
           E++ N+                        L IT+D G+T  D+   +   +   +I+ D
Sbjct: 61  EEYENKRRLVRTHYKNGQPIGGIALNLHNSLFITIDNGATIPDSVCDFLHARNTRLILSD 120

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HH    + IP         L+D      +  A V +L ++   +  +          L  
Sbjct: 121 HHHFLEDRIPKCDAFIHPLLNDNHPFKGISGACVGYLFMLAYAKQHKIK---MRLDHLQY 177

Query: 241 LLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           +  L  ++T+ D++ +    NR  + +     +      L+A+ +     +P     L +
Sbjct: 178 MQVLAGISTIGDMMDVSAPYNRQLLKRMDKTLKTNMPASLQAIYQAQKYKNPYKLSTLAW 237

Query: 300 MIGPSINAGGRIG------ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            + P INA GR          NL   LL +  +      A  L   N+ R++   ++   
Sbjct: 238 DVIPLINAVGRFDGISGFCHCNLVVDLLATQQANPAY--AALLVEANEKRKICVQSL--- 292

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-GS 412
                  +  +  Q + ++  G     G++G+LA +L  +      A+ +   G+ +  S
Sbjct: 293 ------KKSLETTQKNKLIYTGGEVPRGVLGVLANQLL-ENEGVCIALCWRYQGESVEVS 345

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
            R+ EG  I     F      ++  GGH  A G+     
Sbjct: 346 LRAKEGDLIVLFTRFKEMGIEVLG-GGHKQACGMVFNNN 383


>gi|322380523|ref|ZP_08054705.1| single-stranded-DNA-specific exonuclease [Helicobacter suis HS5]
 gi|321147052|gb|EFX41770.1| single-stranded-DNA-specific exonuclease [Helicobacter suis HS5]
          Length = 399

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 48/399 (12%)

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLM 142
           + +A+   ++I+I GDYD DG +  AL++ F        + N  IP R  D YG +  L+
Sbjct: 1   MREALNAQKQIIIGGDYDCDGMSGTALVLYFFKEVLHYPHINYIIPQRNTDCYGMSVELL 60

Query: 143 EKFINE---------------------GAQLIITVDCGSTSYDA-LQYATNQGIDVIVID 180
           E++ N+                        L IT+D G+T  D+   +   +   +I+ D
Sbjct: 61  EEYENKRRLVRTHYKNGQPIGGIALNLHNSLFITIDNGATIPDSVCDFLHARNTRLILSD 120

Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240
           HH    + IP         L+D      +  A V +L ++   +  +          L  
Sbjct: 121 HHHFLEDRIPKCDAFIHPLLNDNHPFKGISGACVGYLFMLAYAKQHKIK---MRLDHLQY 177

Query: 241 LLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299
           +  L  ++T+ D++ +    NR  + +     +      L+A+ +     +P     L +
Sbjct: 178 MQVLAGISTIGDMMDVSAPYNRQLLKRMDKTLKTNMPASLQAIYQAQKYKNPYKLSTLAW 237

Query: 300 MIGPSINAGGRIG------ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
            + P INA GR          NL   LL +  +      A  L   N+ R++   ++   
Sbjct: 238 DVIPLINAVGRFDGISGFCHCNLVVDLLATQQANPAY--AALLVEANEKRKICVQSL--- 292

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-GS 412
                  +  +  Q + ++  G     G++G+LA +L  +      A+ +   G+ +  S
Sbjct: 293 ------KKSLETTQKNKLIYTGGEVPRGVLGVLANQLL-ENEGVCIALCWRYQGESVEVS 345

Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
            R+ EG  I     F      ++  GGH  A G+     
Sbjct: 346 LRAKEGDLIVLFTRFKEMGIEVLG-GGHKQACGMVFNND 383


>gi|303233088|ref|ZP_07319762.1| DEAD/DEAH box helicase [Atopobium vaginae PB189-T1-4]
 gi|302480814|gb|EFL43900.1| DEAD/DEAH box helicase [Atopobium vaginae PB189-T1-4]
          Length = 519

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525
           N +PA       +I  V++ S + +  +D LE   P+G GN  P+FA     +++   V 
Sbjct: 2   NALPAEQFDDTDEISAVVSLSEITVQSLDSLEIMQPFGKGNERPLFAARGVIMKNKAKVG 61

Query: 526 --LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583
               HL+     Q    L AI FR          + +  K + +        W+G  + +
Sbjct: 62  SQGNHLRF-VAVQGKARLDAILFRAAHID----ELMANTKPVDIVFSASNETWQGRIKPK 116

Query: 584 LRVLDA 589
           L V D 
Sbjct: 117 LIVQDI 122


>gi|218506942|ref|ZP_03504820.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli
           Brasil 5]
          Length = 84

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 54/84 (64%)

Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569
           +FA P H+++  R+V   H+++T E+ D   L  IAFR   T LG  L+ SRG  +HV G
Sbjct: 1   LFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAG 60

Query: 570 HLCVNYWRGSKRCQLRVLDASPVE 593
            L  ++++G++R Q+RV DA+P +
Sbjct: 61  TLGADHYQGARRIQMRVCDAAPAK 84


>gi|294671185|ref|ZP_06736039.1| hypothetical protein NEIELOOT_02893 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307123|gb|EFE48366.1| hypothetical protein NEIELOOT_02893 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 111

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
               ++AR+   R+V+       L   +  L+P   +L +C+ AA R+  AI   E I+I
Sbjct: 22  GADPLIARLCAARDVAGPDE---LLDKLSALLPY-TLLKNCETAAVRLADAIEKQENILI 77

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMY 126
             DYD DGA + A+ ++ L       + Y
Sbjct: 78  VADYDADGATACAVGIKGLQAMGARVDFY 106


>gi|301321609|gb|ADK68999.1| Single-stranded DNA-specific exonuclease [Gordonia sp. KTR9]
          Length = 679

 Score = 97.1 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 7/189 (3%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L D D +   I +AI     I +  DYD+DG A+  L    L+    +  + IP      
Sbjct: 50  LPDLDLSVELIHRAISQGRTITVLTDYDMDGVAAGILTYAGLAELGAHVELVIPH-YEGP 108

Query: 135 YGPNPSLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
                  +++ + +     L+IT D G  S + +  A ++G+ VIV DHH    +   A 
Sbjct: 109 REITAPKVDQALAQYPTTSLLITCDVGINSNEGIDRAHDRGVAVIVTDHHIQTVDVCRAD 168

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
           A+V+PNR      +  +C + V   +L    R     +       +  L     +  + D
Sbjct: 169 AVVDPNRTGATYPEPDICGSQVALHILSAYART----HCPTKATAIAMLSVFGGIGGLAD 224

Query: 253 VVPLIGLNR 261
           V+PL G  R
Sbjct: 225 VMPLRGQTR 233



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 105/343 (30%), Gaps = 79/343 (23%)

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL--EMLAMKLDVLNQNRRLMESAMLEQ 353
           ++       +    R    +    +  + +  +      A  L   N+ R+ +  A +E 
Sbjct: 349 DMADSFMVFVPEAVRSSRPDYHPEVFDTYEHLDAGRRSAADTLVANNETRKELTKAAMEG 408

Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413
                       +Q     +      PG++GLLA+ L ++   P+  I         GS 
Sbjct: 409 I--------FAAEQPYAPYLWFSDAKPGVLGLLASNLLQETSMPTMVI---NPETLSGSA 457

Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473
           R+ E FD+   VS   +  +  +  GH  A G+     +             + +P +  
Sbjct: 458 RAPEWFDVLGFVSQMNDPRL--RAQGHHQACGVGFTDTHALAELIAAIAVYVDSLPEVDP 515

Query: 474 TPV----FKIDGVLNASAVNIA----------------------LIDMLESAGPYGAGNP 507
                    +D   + + +++                       L + L   GP+G G P
Sbjct: 516 EDQRADLHMMDIE-SLAQLDMESAEVLVRLRPDIPLPMAPELISLAESLSVLGPFGQGFP 574

Query: 508 NPVFAFPNHKLQ------SIRVV------NL------------AHLQMTFESQDSETLQA 543
                  + +L       SI+++                     HL++         L+ 
Sbjct: 575 A-----ADIRLTFQPASASIKLMSRKEEAGELQKGQAPEPADYKHLKVV----TGHGLEL 625

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
           + +        ++   S    +  T  L  N + G+ R Q  +
Sbjct: 626 LWWNKAD----QYQALSDATLVTATIELSTNLFMGNTRPQAFI 664


>gi|163791329|ref|ZP_02185742.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp.
           AT7]
 gi|159873408|gb|EDP67499.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp.
           AT7]
          Length = 98

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           +W          +   +++  ++  +   + + R +   +  + F+ P     + DP ++
Sbjct: 7   KWKLNEPIVDHEKVTDLSKALSLSPLFIELCLQRGLDSKEKIEQFIQPD-ETWIYDPYLM 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDV 103
            D ++A  RI +A+   E+I I+GDYD 
Sbjct: 66  HDMERAVSRITEAVEQGEQITIYGDYDA 93


>gi|145652264|gb|ABP88187.1| hypothetical protein [Borrelia lonestari]
          Length = 168

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 8/172 (4%)

Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487
            + + +++  GGH  AAG T              K    I    +      ID ++  + 
Sbjct: 1   MIPDHLIINSGGHKAAAGFTFYENVLNEFIKELVKAIKKIEYNELNENSIIIDALIPKNI 60

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQA 543
               L+  +    PYG G    +    +  +Q IR ++      H+ M  ++ + +  +A
Sbjct: 61  TKKELVKTINLFEPYGHGFKEFILKMEDVLIQEIRTIDKNGNSKHISMKIKN-NRDYYKA 119

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595
           I F   GT   + L    G+ + +   +  +++  S++  L+++D    +  
Sbjct: 120 IYFN--GTQNIQELEIKDGQNIDIIFTIGEDFYNQSEKI-LKIIDLKKRQNQ 168


>gi|625706|pir||S44445 single-stranded-DNA-specific exonuclease (EC 3.1.-.-) - Erwinia
           chrysanthemi (fragment)
 gi|495245|emb|CAA54109.1| recJ [Erwinia chrysanthemi]
          Length = 99

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 38  AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           ++P ++ R+   R V        L  S+R L+ D  +L    +A   + QA+ ++ +I+I
Sbjct: 19  SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGITQAVEVLRQALADNRRIVI 74

Query: 98  FGDYDVDGAASVALMMRFLSHCSVN 122
            GD+D DGA S AL +  L   + +
Sbjct: 75  VGDFDADGATSTALTVLALRSMAAH 99


>gi|167933079|ref|ZP_02520166.1| single-stranded-DNA-specific exonuclease RecJ [candidate division
           TM7 single-cell isolate TM7b]
          Length = 169

 Score = 91.4 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518
           +     +N    L+     +ID   + S +N  L+  + +  P+G GNP PV       +
Sbjct: 38  YNSLQLNNQERYLLPKADVEID---DFSEINEDLVGKIATMEPFGNGNPEPVIKITAADI 94

Query: 519 QSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
            +++ +     H++++    D   ++ +AF        E  +   G    +     +N W
Sbjct: 95  VNVQHMGTDGQHIKLSARDSDGVVIRMLAFNA-----PENFLCKPGDTASIWFRPVINKW 149

Query: 577 RGSKRCQLRVLDASPV 592
           +G +  +  +L    V
Sbjct: 150 QGIRSVEGELLHLQLV 165


>gi|126733217|ref|ZP_01748964.1| probable single-stranded DNA-specific exonuclease [Roseobacter
          sp. CCS2]
 gi|126716083|gb|EBA12947.1| probable single-stranded DNA-specific exonuclease [Roseobacter
          sp. CCS2]
          Length = 130

 Score = 91.0 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 5  AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64
          AFL V  S +G RWV    +E    + A+ Q+  +   + RVLV R V    A  FL P+
Sbjct: 9  AFLNVTASANGRRWVGPTAEED-RLSEAMAQQTGLAPALCRVLVRRGVDAQDAPAFLAPT 67

Query: 65 IRLLMPDPLILT 76
          +R L+PDP +L 
Sbjct: 68 LRDLLPDPRVLK 79


>gi|328957580|ref|YP_004374966.1| hypothetical protein CAR_c12580 [Carnobacterium sp. 17-4]
 gi|328673904|gb|AEB29950.1| hypothetical protein CAR_c12580 [Carnobacterium sp. 17-4]
          Length = 107

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 17  RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75
           +W        I+ A  +++  ++  +   + + R +   +  + F+ P    +  DP ++
Sbjct: 7   KWKLKEQNSNIDVATDLSKALSLSPLFIELCLQRGLDSKEKIERFIKPDESWIY-DPYLI 65

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDV 103
              + A  RI  A+   E+I I+GDYD 
Sbjct: 66  YGMESAVSRITDAVEQGEQITIYGDYDA 93


>gi|289808345|ref|ZP_06538974.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 67

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYG 136
            D A   +  A     +I++ GD+D DGA S AL +  +     +  +  +P+R  DGYG
Sbjct: 1   IDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYG 60

Query: 137 PNPSLME 143
            +P +++
Sbjct: 61  LSPEVVD 67


>gi|90413182|ref|ZP_01221178.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium profundum 3TCK]
 gi|90325873|gb|EAS42325.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Photobacterium profundum 3TCK]
          Length = 103

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 40  PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99
           P ++ R+  +R ++ +     L    + L+     L   + A + +V A+  + +I+I G
Sbjct: 20  PPLLQRIYASRGIASE---LELERGAKGLLSY-DKLHGIEPAVQLLVTALAENRRIIIVG 75

Query: 100 DYDVDGAA 107
           D+D DGA 
Sbjct: 76  DFDADGAT 83


>gi|14520284|ref|NP_125759.1| putative ss-DNA-specific exonuclease recj related [Pyrococcus
           abyssi GE5]
 gi|5457499|emb|CAB48990.1| recJ-like single-stranded exonuclease recJ homolog [Pyrococcus
           abyssi GE5]
          Length = 481

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 70/473 (14%), Positives = 143/473 (30%), Gaps = 86/473 (18%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
            +A       I     I I    D DG  S A++ + L+    + ++ I          +
Sbjct: 15  KEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSI------VKQVS 68

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
             L+ +  +E  ++ I  D GS S  ++     +   VI++DHH  ++ E+P   ++   
Sbjct: 69  EDLVRQLKDEDYKVFIFSDLGSGSL-SIIKEHLKDRTVIILDHHPPENVELPEKHILVNP 127

Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRI---------------LRQDNKVPLNFDL----- 238
                +    L  +GV +     +                  +++++ V    +L     
Sbjct: 128 VQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIED 187

Query: 239 --------------------LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278
                                 L  ++A AT  ++  + G  R  + + L       +  
Sbjct: 188 GKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAI-EWLRNNNFNPDKR 246

Query: 279 LKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA---- 333
              L E        +   ++             IG+  +       D   E    A    
Sbjct: 247 YWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREFATLLN 306

Query: 334 ----------------------MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371
                                  +   + +  +  +    +       ++  + +   V+
Sbjct: 307 ATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVL 366

Query: 372 VVEGDRWH-----PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFDI 421
            V  +           + + A     +     FA + E+     GS R+ E     G+ +
Sbjct: 367 YVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHL 426

Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
           G+ +  A E  I  +GGGHA+AAG+ V +           K     V      
Sbjct: 427 GEALKKAAEM-IGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQ 478


>gi|300947615|ref|ZP_07161786.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300452790|gb|EFK16410.1| conserved hypothetical protein [Escherichia coli MS 116-1]
          Length = 86

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V        L  S++ ++P    L+  +KA   +  A     +I++ 
Sbjct: 22  LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77

Query: 99  GDYDVDGAA 107
           GD+D DGA 
Sbjct: 78  GDFDADGAT 86


>gi|207092106|ref|ZP_03239893.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 76

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
            P P +  D  KAA +I++A+  + +I++ GDYD DG  S A+M +F    +  
Sbjct: 23  FPSPFLFKDLKKAALKIIEAMQINTEILVVGDYDADGVISSAIMAKFFESLNYK 76


>gi|167948072|ref|ZP_02535146.1| single-stranded-DNA-specific exonuclease RecJ [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 203

 Score = 71.3 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 264 VVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLL 321
           + +GL   R  +  PG++ALI         + A +LGY IGP +NA GR+ +  LG   L
Sbjct: 1   MEQGLRRIRAGRCRPGIEALIRLAGRDQSRLVASDLGYAIGPRLNAAGRLEDMGLGIECL 60

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWH 379
           ++DD      +A++LD LN+ RR +E  M EQA+  +     ++Q      + +    WH
Sbjct: 61  LADDPSAALQMAVELDRLNRTRREIEQQMQEQAQQLLQQLHREMQGEIPLALCLYDPNWH 120

Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
            G+VG+LA+R+KEK+ RP  A +   DG   GS RS+    I  ++  
Sbjct: 121 QGVVGILASRIKEKYHRPVIAFADVGDGILKGSARSVPALHIRDLLER 168


>gi|291545646|emb|CBL18754.1| hypothetical protein CK1_04440 [Ruminococcus sp. SR1/5]
          Length = 80

 Score = 71.3 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75
          RWV    +       AI ++  I  ++AR++ NR+V   D  + +L   +  L   P ++
Sbjct: 3  RWVVAAKRADFA---AIGKEFGIDPVIARLIRNRDVQDRDEIRRYLYGKVDEL-ASPHLM 58

Query: 76 TDCDKAARRIVQAIYNS 92
           D DKA   +   I   
Sbjct: 59 KDVDKAVEILRNKIKEK 75


>gi|18978427|ref|NP_579784.1| hypothetical protein PF2055 [Pyrococcus furiosus DSM 3638]
 gi|18894271|gb|AAL82179.1| hypothetical protein PF2055 [Pyrococcus furiosus DSM 3638]
          Length = 477

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 69/468 (14%), Positives = 140/468 (29%), Gaps = 86/468 (18%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           +A   +   I     I I    D DG  S A++ + L     + ++ I          + 
Sbjct: 12  EAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISI------VKQVSE 65

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+ +  +E  ++ I  D GS S   ++    +   VI++DHH  ++ ++    ++    
Sbjct: 66  DLLRELKDEDYKIFIFSDLGSGSLSLIKEY-LKEKTVIILDHHPPENVKLEEKHILVNPV 124

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILR--------------QDNKVPLNFDLLSLLD-- 243
               +    L  +GV +     +    R              Q+N    +   L +++  
Sbjct: 125 QFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDG 184

Query: 244 ------------------------LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
                                   ++A AT  ++  + G  R  + + L           
Sbjct: 185 KSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAI-EWLKNKGFNPEKKY 243

Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA----- 333
             L E            ++        +    IG+  +       D   E    A     
Sbjct: 244 WELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATLLNA 303

Query: 334 ---------------------MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
                                 K   + ++ +  +    +       ++  +     V+ 
Sbjct: 304 TGRLNLGNLGVAVCLGDEEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVYVLY 363

Query: 373 VEGDRWH-----PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFDIG 422
           V              + + A     +     FA + E+     GS R+ E     G+++G
Sbjct: 364 VGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDEDPNLLKGSARTTERALAKGYNLG 423

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
           + +  A E     +GGGHA+AAG+ + R           K     V  
Sbjct: 424 EALRKAAELVNG-EGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSK 470


>gi|14590012|ref|NP_142076.1| hypothetical protein PH0059 [Pyrococcus horikoshii OT3]
 gi|3256444|dbj|BAA29127.1| 478aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 478

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 85/280 (30%), Gaps = 24/280 (8%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +A   +   I     I I    D DG  S A++ + L+      ++ I          
Sbjct: 13  IREAVDLVKFHIELGHTIRIISHRDADGITSAAILAKALAREGAKFHISI------VKQV 66

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +  L+ +  +E  ++II  D GS S   +         VI+  H     E    + L NP
Sbjct: 67  SEELVRQLKDEEYKIIIFSDLGSGSLSLIGEHLKDKSVVILDHHPPEPVETHEKHILANP 126

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            +    S    L  +GV +     +                  L  +  +  V D+    
Sbjct: 127 VQFGANSV-RDLSGSGVSYFFARELNE------------MNKDLAYIAIVGAVGDMQEND 173

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G+     +  +   +  G   ++  +      +    + L Y   P I      G+    
Sbjct: 174 GVFHGMNLDIIEDGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEI--PEITGDERKA 231

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357
              L +      +         +++R+ +   ++      
Sbjct: 232 IEWLRNKGFDPDKKYWELS---DEDRKKLHDYLVIHMIKH 268


>gi|145652220|gb|ABP88155.1| putative RecJ [Borrelia lonestari]
          Length = 250

 Score = 70.6 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 105/255 (41%), Gaps = 8/255 (3%)

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
                  I +         L    N+ I++  ID  +   ++ P +A      +  +S  
Sbjct: 1   EFSKNTYIVLFNKDEQNQLLNKFFNKKINIESIDISETFVKKFPKFAKKTLKEVMQISKY 60

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
                  +   +  + Y I+ + NK  L   L   L  VA+ T+ D +P+I  NR  V +
Sbjct: 61  FKYKEIDIKEKLYYIFYNIIFEVNKDILKNCLKK-LKFVAIGTIADNMPIINENRIVVKE 119

Query: 267 GLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324
           GL     + N  +  L++ VNI   + IT+ ++ + I P +N+ GR+ ++++  + L+++
Sbjct: 120 GLKEIALRENMSINYLLKEVNILTKTNITSTDIAFKIAPILNSTGRLEKADITIQFLLTE 179

Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384
           D  ++E    ++  +N  R+  E          +  +    +    IV        GI  
Sbjct: 180 DINKIENKFKEIKNINTLRKHKEE-----ISWNIHNENTIFKNDKFIVCYDKYTPKGISS 234

Query: 385 LLAARLKEKFGRPSF 399
            +A RL   + + + 
Sbjct: 235 RMATRLASYYQKVAV 249


>gi|303244184|ref|ZP_07330522.1| phosphoesterase RecJ domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302485569|gb|EFL48495.1| phosphoesterase RecJ domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 468

 Score = 70.6 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 25/253 (9%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + +  +A + + +       I+I+   D DG  +  ++   L+  ++ A      R + G
Sbjct: 1   MPNLKRAVKTLRK--NRKNNILIYTHIDTDGITTRVILEELLNRLNIEAEF----RFLKG 54

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTS-------YDALQYATNQGIDVIVIDHHQVKSE 187
            G N   +E    +   LII  D GS          +          ++I++DHH   + 
Sbjct: 55  IGTNS--IEDIPFKDYDLIIFGDLGSGQLDLIKGKMEEYNLLDKTDKNIIILDHHIPANI 112

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
            IP   +      +++ G   +C AGV +L   +           P N DL     L A+
Sbjct: 113 NIPKNIINVNPWNNNIDGGKEICGAGVSYLFAKM---------CNPRNIDLAKYAVLGAV 163

Query: 248 ATVCDVV-PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
             + ++   LIGLNR+ +   +        P L+   +                     N
Sbjct: 164 GDIQNLEGKLIGLNRSILNDAVKSGEVVAFPDLQFYGKHTKPIFASIKYFTDVRTDLMNN 223

Query: 307 AGGRIGESNLGSR 319
               I   N  ++
Sbjct: 224 DSRIINFINQINK 236


>gi|150401766|ref|YP_001325532.1| phosphoesterase domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014469|gb|ABR56920.1| phosphoesterase RecJ domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 468

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 21/180 (11%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L +   A + + +    +  I+++   D DG  S  ++   ++  ++NA      R +
Sbjct: 2   ELLKNLKLAVKILRK--NRNNNILVYTHIDTDGITSRVILEELMNKLNINAEF----RFL 55

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSY----DALQYATNQGIDVIVIDHHQVKSEE 188
              G     + +       LII  D GS       + L+    +   +I++DHH     +
Sbjct: 56  KQLGT--DTINEIPFNDYDLIIFADLGSGQINLIKEKLKNEKTKIPHIIILDHHITAKTQ 113

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           IP   +      +++ G   +C AGV +L               P   DL     L A+ 
Sbjct: 114 IPENIINVNPWNNNIDGGKEICGAGVCYLFA---------KTCNPRYTDLAKYAILGAVG 164


>gi|221316527|ref|ZP_03598332.1| single-stranded-DNA-specific exonuclease RecJ, putative [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 329

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 108/269 (40%), Gaps = 21/269 (7%)

Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393
                + +  +  +++M++++  K+ +   +    S+ +++       I GL+A ++ +K
Sbjct: 69  EYAFDMMKKVKGRQNSMIKKSLEKLRSSTYNEGGISIALLDSSDE-AAITGLVANKVAKK 127

Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453
           + +P+  + +++  K IGSGR  E   +  +  +  E G++    GHA A G+++   NF
Sbjct: 128 YQKPALVLYYKDK-KYIGSGRGDEKV-LSSLKDWCNETGLVEFAQGHANAFGISIPEDNF 185

Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML---ESAGPYGAGNPNPV 510
                   +             V+++D ++    V+ +LI+ +   +    +G     P+
Sbjct: 186 EEFKKRTHEV-------EQNEFVYEVDLIVK-ENVDRSLIEDVTDNKHL--FGGKVQEPL 235

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK-RMHVTG 569
            AF   K+ +   +      +TF       ++ + +                +  M   G
Sbjct: 236 LAFVGIKI-NKNFIRQKGSMLTFYENG---VEFVMYGAPEGLYESLKNNFDRQITMDFVG 291

Query: 570 HLCVNYWRGSKRCQLRVLDASPVEGHHFA 598
              VN +   +  QL ++D    E   + 
Sbjct: 292 TPSVNVYGNKRTLQLVLVDCERNESGQYD 320


>gi|311697297|gb|ADQ00169.1| single-stranded-DNA-specific exonuclease RecJ-like protein [marine
           bacterium HP15]
          Length = 655

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/458 (13%), Positives = 151/458 (32%), Gaps = 46/458 (10%)

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN-KVPL 234
            ++ D  + +     A    + +  ++   +  L    +V+ +         +   K P 
Sbjct: 196 SVLSDSPRHEIRPSDAVLYPDCSLFEEDVNKKALTLTSLVYELCTQCREQAIEKVVKHPR 255

Query: 235 NFDLLSLLD---------LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG------- 278
           +  L++ L          LVAL+ + D +P+  L R +V +G+    R            
Sbjct: 256 SQALMAQLQSACLESSEGLVALSLLLDDMPMTRLVRHFVKRGVEQINRGAILQPRTAHSK 315

Query: 279 ------LKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
                 +++L+    +  P+T+++L + + P  +A    G + +    L+S++ +     
Sbjct: 316 GVLSYGMRSLLAECELPLPVTSQSLQFGLSPLFSALCYAGTAEILIDCLLSNERKTASDK 375

Query: 333 AMKLDVLNQNR-----RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
           A K  ++         + +   M   +E    +   D+ +   +V + D  +   + + A
Sbjct: 376 AAKASLIKAKTYFPSLKHLAGLMKGDSEKLDPSPAGDVHRFRYVVHDLDAANEKYIPVFA 435

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL----VKGGGHAMA 443
            +   + G     +S    G      RS +  ++  ++        +          A +
Sbjct: 436 EQKHAEHGVTQLVVSESAPGYARCFVRS-DVINVNDVLRECSFRLAVKGANFCFWADAFS 494

Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503
             + +    F        +          ++     DG L  +    AL   +E   P+G
Sbjct: 495 GDILMPTSCFSDFEKIIARCLSESSAVEQSSENVIHDGPLGVNQRTSALALWVEK-QPWG 553

Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFR--VYGTPLGEFLMQ 559
              P P+F   +  +Q    +  +H  +++   + + +     AF      +   +    
Sbjct: 554 RQYPEPLFR-QSFVVQKSSTLMESHQEVKVRDVTPEGKVSHGEAFNLLWRNSVDKDQGRL 612

Query: 560 SRGKRMHVTGHLCVNY-------WRGSKRCQLRVLDAS 590
                + V   L V         +       L   D +
Sbjct: 613 RPDSIIDVEYRLKVRRSKSTSEVYGEIVNLSLVTEDIA 650


>gi|116753443|ref|YP_842561.1| phosphoesterase domain-containing protein [Methanosaeta thermophila
           PT]
 gi|116664894|gb|ABK13921.1| phosphoesterase, RecJ domain protein [Methanosaeta thermophila PT]
          Length = 427

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 29/207 (14%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   +KAA  I +AI   +++++    D DG +S  L+   L+   +     +  R+   
Sbjct: 1   MNAFEKAAETIARAILQCDRVVVVSHDDADGISSAGLICNALARAGIPFQARLTQRLT-- 58

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                      I      I+  D GS   D +        +V V+DHH+           
Sbjct: 59  --------ADTIEGLKPPIVFCDMGSGQPDVISGIK---GEVFVLDHHKPVGSLNCISLN 107

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
            +   +D       + A+GVV+ V+    R +  +           L  L  +  + D  
Sbjct: 108 PHNFGIDGAF---EISASGVVYSVV----RKMGDN---------RDLAGLALVGAIGDRQ 151

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKA 281
            +IG NR  + +G+     +  PGLK 
Sbjct: 152 AMIGANRHILEEGIAAGAVEVRPGLKM 178


>gi|270610609|ref|ZP_06221694.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
 gi|270318042|gb|EFA29311.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
          Length = 148

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLK 391
           A+ LD LNQ R+ +E+ M  +A           ++    I +    WH G++G++++R+K
Sbjct: 1   ALDLDELNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVK 60

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449
           +++ RP  A + + +G   GS RSIEG  +  ++         I++K GGHAMAAGL++ 
Sbjct: 61  DQYHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIR 120

Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVF 477
              F      F +   + +       + 
Sbjct: 121 EEYFADFQHLFNQTIADWLDEEHLQGII 148


>gi|45359245|ref|NP_988802.1| single stranded DNA-specific exonuclease [Methanococcus maripaludis
           S2]
 gi|45048120|emb|CAF31238.1| single stranded DNA-specific exonuclease [Methanococcus maripaludis
           S2]
          Length = 467

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 108/310 (34%), Gaps = 37/310 (11%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L +  KA + + +     +KI++    D DG  S  ++   L   ++ A      +I  G
Sbjct: 4   LLNLKKAVKILRK--NRDKKILVCTHIDTDGINSRIILENVLERLNIEAEFLFLRQIDYG 61

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ---YATNQGIDVIVIDHHQVKSEEIPA 191
                      I     LII  D GS   D +      T++   +I++DHH V +E+IP 
Sbjct: 62  -------TIDTIPFDNDLIIFADLGSGQIDLINEKLKETSKKPKIIILDHHIVSNEKIPE 114

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +      D + G   +C AGV +         L      P   DL     L A+  V 
Sbjct: 115 NIINVNPHNDGIDGGKEICGAGVCY---------LFAKICDPRFTDLAKYAVLGAVGDVQ 165

Query: 252 DVV-PLIGLNRAYV------------VKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
            +   LIGLNR  +               L    +   P   ++    ++ + +T  +  
Sbjct: 166 SLEGNLIGLNRDVILRDAVKAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDND-S 224

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
            +I    N   + G   +    L      + +++  +   L++  R +           +
Sbjct: 225 RIINFINNVNRKHGTDIIPKDYLCDLTFDQKKIMGSEF--LHKCSRYIPPDWRIHLPKVI 282

Query: 359 LTQCDDIQQA 368
             +  ++   
Sbjct: 283 FGESYELTNE 292


>gi|330508024|ref|YP_004384452.1| phosphoesterase, RecJ domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328928832|gb|AEB68634.1| phosphoesterase, RecJ domain protein [Methanosaeta concilii GP-6]
          Length = 440

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 33/204 (16%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +   DKAA  I ++I   E + +    D DG  S  L+   L    +     + +R+   
Sbjct: 1   MKRLDKAAEAIARSIRQCEHMRVISHNDADGITSAGLICHALMRAGIPFQATLVNRLD-- 58

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                      I+     ++  D GS   D +        +  V+DHH+           
Sbjct: 59  --------RSVIDGLTGPVVFCDMGSGKPDLISRVQ---GECFVLDHHRP---------- 97

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVL--IYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
                LD +    HL      F +     +Y ++R             L  L  +  + D
Sbjct: 98  --VGTLDCMHHNPHLFGIDGAFELSAAGTVYSVVRHMGDNA------DLAGLALVGAMGD 149

Query: 253 VVPLIGLNRAYVVKGLMVARRQGN 276
              +IG NR+ + + +     Q  
Sbjct: 150 RQAMIGANRSILEEAVASGAVQVR 173


>gi|328480025|gb|EGF49042.1| single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 168

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%)

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
           +P   +     G L  AGV F V   +           L    L  +DL AL T+ D+V 
Sbjct: 2   HPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIADLVK 50

Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGES 314
           L   NR     GL + + Q   GL A+++   +    +    +G++IGP +NA GR+G++
Sbjct: 51  LTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDA 110

Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
           N G  LL + +      LA ++  LNQ R+ + S + ++A     T       A+   
Sbjct: 111 NPGVTLLTTFEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMAQTPEIKRPNAAACQ 168


>gi|268324316|emb|CBH37904.1| putative phosphoesterase, DHH family [uncultured archaeon]
          Length = 460

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 24/198 (12%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +KAA      I   E   +   YD DG  SVA++   L    +  +  I        
Sbjct: 6   KNLEKAAEI----IKRHEYARVISHYDADGITSVAIICTALLRRGIQFHATI-------- 53

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----QVKSEEIPA 191
             N        +    L+I  D G+   D +     +  DV++IDHH     V     P 
Sbjct: 54  -VNKVERSLIQDLNEGLVIFCDMGTAHTDLIL-EHLKEKDVVIIDHHVPLASVPIPTSPT 111

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            + V  N     S +       +    +  +       +          L  L    ++ 
Sbjct: 112 SSFVLVN-PYCSSEEKEEIGGDICAAGISYLLVRCLSTDANNNI----DLAGLAVAGSLG 166

Query: 252 DVVPLI-GLNRAYVVKGL 268
           D V L  G+N+  + +G+
Sbjct: 167 DKVALDSGINKLILDEGI 184


>gi|261349954|ref|ZP_05975371.1| putative single-stranded-DNA-specific exonuclease
           [Methanobrevibacter smithii DSM 2374]
 gi|288860737|gb|EFC93035.1| putative single-stranded-DNA-specific exonuclease
           [Methanobrevibacter smithii DSM 2374]
          Length = 444

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           +A+  + + I N+  I I    D DG ++ A++   L   +V  +  I  R+ +      
Sbjct: 7   EASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE------ 60

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+ +  +E   L+I  D GS+    +    +   DVI+ DHHQV   E  +  +     
Sbjct: 61  DLINQLRHEKHDLVIFSDMGSSF---VGELNSFKCDVIIADHHQVSDVEAESNVVHINPH 117

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRI 225
           L D+ G   L   G  +L +  + + 
Sbjct: 118 LFDIDGSRDLSGTGSSYLAVRDLDKK 143


>gi|148643253|ref|YP_001273766.1| single-stranded DNA-specific exonuclease [Methanobrevibacter
           smithii ATCC 35061]
 gi|148552270|gb|ABQ87398.1| single-stranded DNA-specific exonuclease, DHH family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 444

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           +A+  + + I N+  I I    D DG ++ A++   L   +V  +  I  R+ +      
Sbjct: 7   EASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE------ 60

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+ +  +E   L+I  D GS+    +    +   DVI+ DHHQV   E  +  +     
Sbjct: 61  DLINQLRHEKHDLVIFSDMGSSF---VGELNSFKCDVIIADHHQVSDVEAESNVVHINPH 117

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRI 225
           L D+ G   L  AG  +L +  + + 
Sbjct: 118 LFDIDGSRDLSGAGSSYLAVRDLDKK 143


>gi|222445486|ref|ZP_03608001.1| hypothetical protein METSMIALI_01125 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435051|gb|EEE42216.1| hypothetical protein METSMIALI_01125 [Methanobrevibacter smithii
           DSM 2375]
          Length = 444

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           +A+  + + I N+  I I    D DG ++ A++   L   +V  +  I  R+ +      
Sbjct: 7   EASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE------ 60

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+ +  +E   L+I  D GS+    +    +   DVI+ DHHQV   E  +  +     
Sbjct: 61  DLINQLRHEKHDLVIFSDMGSSF---VGELNSFKCDVIIADHHQVSDVEAESNVVHINPH 117

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRI 225
           L D+ G   L  AG  +L +  + + 
Sbjct: 118 LFDIDGSRDLSGAGSSYLAVRDLDKK 143


>gi|52549816|gb|AAU83665.1| putative single-stranded-DNA-specific exonuclease [uncultured
           archaeon GZfos32E7]
          Length = 460

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 24/198 (12%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +KAA      I   E   +   YD DG  SVA++   L    +  +  I        
Sbjct: 6   KNLEKAAEI----IKRHEYARVISHYDADGITSVAIICTALLRRGIQFHATI-------- 53

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----QVKSEEIPA 191
             N        +    L+I  D G+   D +     +  DV++IDHH     V     P 
Sbjct: 54  -VNKVERSLIEDLNEGLVIFCDMGTAHTDLIL-EHLKEKDVVIIDHHVPLASVPIPTSPT 111

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            + V  N     S +       +    +  +       +          L  L    ++ 
Sbjct: 112 SSFVLVN-PYCSSEEKEEIGGDICAAGISYLLVRCLSTDANNNI----DLAGLAVAGSLG 166

Query: 252 DVVPLI-GLNRAYVVKGL 268
           D V L  G+N+  + +G+
Sbjct: 167 DKVALDSGINKLILDEGI 184


>gi|148826177|ref|YP_001290930.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittEE]
 gi|148716337|gb|ABQ98547.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus
           influenzae PittEE]
          Length = 61

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593
            Q    L AIAF +      +  +    K+  +   L +N +RG++  QL V    P++
Sbjct: 6   KQGGVLLDAIAFNINTRLYPDLSI----KQARLAYKLDINEFRGNRSLQLLVDYIEPID 60


>gi|159905375|ref|YP_001549037.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886868|gb|ABX01805.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C6]
          Length = 467

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 105/285 (36%), Gaps = 36/285 (12%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L +  KA + + +     ++I++    D DG  S  ++ + L   ++ A      +I  G
Sbjct: 4   LINLKKAVKLLRK--NRDKRILVCTHIDTDGINSRIILEKVLERLNIEAEFLFLRQIDYG 61

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN---QGIDVIVIDHHQVKSEEIPA 191
                      I   + LII  D GS   D +        +   +I++DHH + +E IP 
Sbjct: 62  -------TIDTIPFDSDLIIFADLGSGQIDLINEKLEELSKKPKIIILDHHFISNERIPE 114

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +      + + G   +C AGV +L               P   DL     L A+  V 
Sbjct: 115 NIVNVNPHNNGIDGGKEICGAGVCYLFA---------KICDPRFTDLAKYAVLGAVGDVQ 165

Query: 252 DVV-PLIGLNRAYVVK------------GLMVARRQGNPGLKALIERVNISSPITAENLG 298
            +   LIGLNR  ++K             L    +   P   ++    ++ + +T  +  
Sbjct: 166 SLEGNLIGLNRDVILKDAINAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDNDS- 224

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343
             I   IN   R   +++  +  + D + E + +     +   +R
Sbjct: 225 -RIINFINNVNRKHGTDIIPKDYMCDLTFEQKKILGSEFLHKCSR 268


>gi|150402879|ref|YP_001330173.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150033909|gb|ABR66022.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C7]
          Length = 467

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L +  +A + + +     +KI++    D DG  S  ++ + L   ++ A      +I  G
Sbjct: 4   LLNLKRAVKLLRK--NREKKILVCTHIDTDGINSRIILEKVLERLNIEAEFLFLRQIDYG 61

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN---QGIDVIVIDHHQVKSEEIPA 191
                      I     LII  D GS   D +        +   +I++DHH + +E+IP 
Sbjct: 62  -------TIDTIPFDNDLIIFADLGSGQIDLINEKLKELSKKPKIIILDHHLISNEKIPE 114

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +      + + G   +C AGV +         L      P   DL     L A+  V 
Sbjct: 115 NIVNVNPHNNGIDGGKEICGAGVCY---------LFAKICNPRFTDLAKYAVLGAVGDVQ 165

Query: 252 DVV-PLIGLNRAYV------------VKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
            +   LIGLNR  +               L    +   P   ++    ++ + +T  +  
Sbjct: 166 SLEGNLIGLNRDLILRDAINAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDND-S 224

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
            +I    N   + G + +    L     ++ +++  + 
Sbjct: 225 RIINFINNVNRKHGTNIIPKDYLCDLTFEQKKIMGSEF 262


>gi|291533806|emb|CBL06919.1| hypothetical protein MHY_22890 [Megamonas hypermegale ART12/1]
          Length = 86

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74
            RW  L   E     L   +   I   +A +L  +N+  + AK FLNP+ ++   DP +
Sbjct: 2  NKRWEILPIDEKKQILLE--KNLHISSSLAEILTRKNLDENSAKLFLNPT-KIPYHDPFL 58

Query: 75 LTDCDKAARR 84
          L D +KA +R
Sbjct: 59 LKDMEKACQR 68


>gi|242399248|ref|YP_002994672.1| SsDNA-specific exonuclease [Thermococcus sibiricus MM 739]
 gi|242265641|gb|ACS90323.1| SsDNA-specific exonuclease [Thermococcus sibiricus MM 739]
          Length = 476

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 26/287 (9%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           + A  I   I     I I    D DG  + A++ + ++    + ++ I          + 
Sbjct: 13  EGAELIKMHIELGHSIRIISHRDADGITAGAILAKAIAREGADFHLSI------VKQLSE 66

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNP 197
            L+++   E  ++ I  D GS S   ++        V++ DHH  +    E   + +VNP
Sbjct: 67  DLIKELAEEDQKIYIFSDLGSGSIRFIERY-LADATVVIADHHPPEDGEIEQENHVIVNP 125

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            +    S    L  +GV + +   +    +             L  L  +  V D+  + 
Sbjct: 126 TQFGADSV-RDLSGSGVAYFITKALNEKNK------------DLSYLALVGAVGDMQEVD 172

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G      V+ +  A++     L+  I      +   A+ L Y   P +   G  G+    
Sbjct: 173 GQFHGINVEIIDDAKKLELIELRKEIRLFGRETRTLAQMLAYASNPEL--PGITGDLRNA 230

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
              L S                 + R+L ++ ++   +     +  D
Sbjct: 231 IEFLRSKGFDPDVNYWQ--LKEEEKRKLHDALVIHLIKNNASKEDID 275


>gi|134046751|ref|YP_001098236.1| exonuclease RecJ [Methanococcus maripaludis C5]
 gi|132664376|gb|ABO36022.1| exonuclease RecJ [Methanococcus maripaludis C5]
          Length = 467

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 112/310 (36%), Gaps = 37/310 (11%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L +  KA + + +     +KI++    D DG  S  ++ + L   ++ A      +I  G
Sbjct: 4   LINLKKAVKLLRK--NRDKKILVCTHIDTDGINSRIILEKVLERLNIGAEFLFLRQIDYG 61

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ---YATNQGIDVIVIDHHQVKSEEIPA 191
                      I     LII  D GS   D +       ++   +I++DHH + +E+IP 
Sbjct: 62  -------TVDTIPFDNDLIIFADLGSGQIDLINEKLKEISKKPKIIILDHHLISNEKIPE 114

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +      + + G   +C AGV +         L      P   DL     L A+  V 
Sbjct: 115 NIVNVNPHNNGIDGGKEICGAGVCY---------LFAKICDPRFTDLAKYAVLGAVGDVQ 165

Query: 252 DVV-PLIGLNRAYVVK------------GLMVARRQGNPGLKALIERVNISSPITAENLG 298
            +   LIGLNR  ++K             L    +   P   ++    ++ + +T  +  
Sbjct: 166 SLEGNLIGLNRDVILKDAIKSGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDND-S 224

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
            +I    N   + G   +    L     +E +++  +   L++  R +  A        +
Sbjct: 225 RIINFINNVNRKHGTDIIPKNYLCELTFEEKKIMGTEF--LHKCSRYIPPAWRIHLPKVI 282

Query: 359 LTQCDDIQQA 368
             +  ++   
Sbjct: 283 FGESYELTNE 292


>gi|284162411|ref|YP_003401034.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM
           5631]
 gi|284012408|gb|ADB58361.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 459

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 70/229 (30%), Gaps = 32/229 (13%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           + +  K AR +   I   E + I    D DG  S A+    L    ++  +     +   
Sbjct: 1   MKEILKRARELADKIKKREYVKIVTHIDADGITSGAIAFESLRRAGIDCEIKFVKNLD-- 58

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                   +K      + +   D GS     +       +D ++ DHH  +         
Sbjct: 59  -------SKKIEELSNEFVWFTDLGSGCIKDIVRFK---LDCVITDHHIPEGYYRYQLNP 108

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD-- 252
            +            L  +G  +LV   +              + + L+ L  +  + D  
Sbjct: 109 HDFGYDGSY----DLSGSGATYLVAKFLN-----------PMNHVDLIQLAIVGAIGDLQ 153

Query: 253 ---VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
                 L+GLN+  + +G+     +    L+   ++      +   N  
Sbjct: 154 DSKNCKLVGLNKFLIEEGVKHGFLKVEKDLRFFGKQTRPVFKMLEYNFD 202


>gi|289596791|ref|YP_003483487.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
 gi|289534578|gb|ADD08925.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
          Length = 477

 Score = 64.0 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 78  CDKAARR---IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
            +   +R   I + I  ++KI+I    D DG  S ++  R L   + +       RI   
Sbjct: 1   MESFLKRAKEIARKIEEADKIVIVSHIDADGITSGSIAARALQRLNKDF------RIDFV 54

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
              +   +E+  +E   L+   D GS     +      G+D ++ DHH
Sbjct: 55  KQLDERKIEELKDENPDLVWFTDLGSGMVHLMY-----GLDAVITDHH 97


>gi|254168764|ref|ZP_04875606.1| DHH family [Aciduliprofundum boonei T469]
 gi|197622390|gb|EDY34963.1| DHH family [Aciduliprofundum boonei T469]
          Length = 483

 Score = 64.0 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A+ I + I  ++KI+I    D DG  S ++  R L   + +       RI      +   
Sbjct: 14  AKEIARKIEEADKIVIVSHIDADGITSGSIAARALQRLNKDF------RIDFVKQLDERK 67

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           +E+  +E   L+   D GS     +      G+D ++ DHH
Sbjct: 68  IEELKDENPDLVWFTDLGSGMVHLMY-----GLDAVITDHH 103


>gi|254168837|ref|ZP_04875678.1| DHH family [Aciduliprofundum boonei T469]
 gi|197622274|gb|EDY34848.1| DHH family [Aciduliprofundum boonei T469]
          Length = 483

 Score = 64.0 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A+ I + I  ++KI+I    D DG  S ++  R L   + +       RI      +   
Sbjct: 14  AKEIARKIEEADKIVIVSHIDADGITSGSIAARALQRLNKDF------RIDFVKQLDERK 67

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           +E+  +E   L+   D GS     +      G+D ++ DHH
Sbjct: 68  IEELKDENPDLVWFTDLGSGMVHLMY-----GLDAVITDHH 103


>gi|288932039|ref|YP_003436099.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894287|gb|ADC65824.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
          Length = 431

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/444 (14%), Positives = 137/444 (30%), Gaps = 91/444 (20%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           +   + + I+  YD DG +  A++   L       ++     + + + P           
Sbjct: 16  LDKHDYVRIYAHYDADGISGAAIVSIALMRMGKKVHVSFLKGLNESFEPE---------- 65

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
              L I VD GS   + +        DVI++DHH                 L  + G   
Sbjct: 66  --DLTIFVDMGSGYPEKISEIKE---DVIIVDHHFPVGRIEKENLAHINPHLAGIDGSFE 120

Query: 209 LCAAGVVFLVLVLI-----------------YRILRQDN--------------------- 230
           + A+   +     +                  + LR  N                     
Sbjct: 121 MSASATAYFFAEYLGNNYDLTALALIGIIGDKQKLRGGNLEVVKRGLERGYLERREGLKM 180

Query: 231 ------------------KVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272
                                   +L   L+ V++    +   L     + +  G+ +  
Sbjct: 181 ISGKVREVLLYSTEPFLNFYGNEDELDKFLEEVSVDGEKEFDELGKEEESRLANGIAIRL 240

Query: 273 RQGNPGLKALIERVNISSPITAENL--GYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
            + N       +       +  E +    M+   +NA GR   +++   + + D+S    
Sbjct: 241 LKMNCYPGIFEDVFGEKFYLKNELIKNSIMLSEVVNACGRKSANSIAFAICMRDESYL-- 298

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390
                   ++  R   E  + E     V+ + +++++   I        P    + +   
Sbjct: 299 -----EKAVSLWREFQEELLEE-----VVKRIEEVKEGFCIRYLIMEDAPTTGPIASILS 348

Query: 391 KEKF-GRPSFAISFEEDGKGIGSGRSI----EGFDIGKMVSFAVEEGILVKGGGHAMAAG 445
           +  F  +P  AI+ ++ G+   S R      E  ++G+++  A E+     GGGH++AAG
Sbjct: 349 RYIFSDKPFIAINVKKSGEVKVSARGNEKLAEKVNLGEVMRKAAEKVG-GSGGGHSVAAG 407

Query: 446 LTVERVNFGRLCDFFQKFAHNIVP 469
             +             +   + + 
Sbjct: 408 ANINSDKVEEFLKEVDRLCCSSLS 431


>gi|297619809|ref|YP_003707914.1| phosphoesterase RecJ domain-containing protein [Methanococcus
           voltae A3]
 gi|297378786|gb|ADI36941.1| phosphoesterase RecJ domain protein [Methanococcus voltae A3]
          Length = 468

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 23/256 (8%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L++  KA   I+   Y++  I+++   D DG  S A++   LS   +        +I  G
Sbjct: 4   LSNMQKATNEILNHKYDN--IIVYTHIDTDGLNSRAVLEETLSRQGIFPEYRFLRQIDYG 61

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ----YATNQGIDVIVIDHHQVKSEEIP 190
                  +         L+I  D GS   D +         +   +++ DHH  + +++P
Sbjct: 62  ------TIGDIPFGDYDLVIFADLGSGQIDMIDAQIKSMNIKPPKIVIFDHHLCQFKKMP 115

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
            Y        D L+G   LC AGV +L    +    R          L     L A+  V
Sbjct: 116 EYITNVNPSQDGLNGSIELCGAGVCYLFARGLSLDNRD---------LSKYALLGAIGDV 166

Query: 251 CD-VVPLIGLNRAYVVK-GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308
            +    L GLNR  ++K  L +     +P L+   +                   + N  
Sbjct: 167 QNLNGKLEGLNRNVILKDALDLNLVSKSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDNDS 226

Query: 309 GRIGESNLGSRLLISD 324
             I   N  ++   S+
Sbjct: 227 RIINFINHVNKKYDSE 242


>gi|270682530|ref|ZP_06222775.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
 gi|270316294|gb|EFA28227.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus
           influenzae HK1212]
          Length = 122

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 214 VVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271
           + F +++ +    R+          +   LLDLVAL TV DVVPL   NR    +GLM  
Sbjct: 1   MAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRI 60

Query: 272 RRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329
           R +   PG+ AL E  N +    T+ +LG+ IGP +NA GR+   ++G  LL++++  + 
Sbjct: 61  RARHCRPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKA 120

Query: 330 E 330
            
Sbjct: 121 R 121


>gi|15679421|ref|NP_276538.1| hypothetical protein MTH1422 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622535|gb|AAB85899.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 457

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/468 (16%), Positives = 136/468 (29%), Gaps = 77/468 (16%)

Query: 63  PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
           PS    +PD  IL    +A++ + + +     I I    D DG ++  ++ R +S  +  
Sbjct: 7   PSSSSKLPD-SILKRGAEASKVLEEHLERGNIIRIISHNDADGLSAAGVVARAISSMNGQ 65

Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
            ++ I  R+   +      ++K   E   L    D GS   + +        DVIV DHH
Sbjct: 66  FHISILSRLKKEF------IKKLSGEKYSLFFFCDMGSAYLEEIS---RLKGDVIVADHH 116

Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR------------------ 224
           Q    E   + +     L  L G   L A+G  +L   L+ R                  
Sbjct: 117 QPSESEAGPHVVHINPHLHGLDGSRDLSASGTAYLATRLLNRKTAPLALVGALGDMQYTD 176

Query: 225 -------------------------ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
                                     L      PL   +    +        D+   +G 
Sbjct: 177 GFTGANRFIMEEAVEEGVLQVHSDLKLASRYTEPLYRSIAYTFNPALPGLTGDMEASMGF 236

Query: 260 -NRAYVVKGLMVARRQG-----------NPGLKALIERVNISSPITAENLGYMIGPSINA 307
                V  G+                      +   E           +L   I   ++A
Sbjct: 237 LENIGVSYGVKYPDLSPEERDVLRDELTRINPEIFGEVFTSREFRNIGDLS-DIAGVLDA 295

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367
            G+  +  +G  L + +       +A++   L +N R      L     +  T  +++Q 
Sbjct: 296 CGKNRKYGIGIGLCLGEREG-ALDVALE---LQKNYREELVKGLAWIRREGSTTLENLQY 351

Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-----EGFDIG 422
                         I  +  +        P   +S  +      S R+       G ++G
Sbjct: 352 IYSEDKAFKGIMGTIASISLSLKILDPDIPLLGLSRMDQHV-KVSARTTRPAVERGVNLG 410

Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
             +  A        GGGH +AAG  V   +         +        
Sbjct: 411 VALRDA-AASFGGTGGGHDIAAGAMVPYRDMESFLQLVDEILGTQTGP 457


>gi|302889072|ref|XP_003043422.1| hypothetical protein NECHADRAFT_24662 [Nectria haematococca mpVI
           77-13-4]
 gi|256724338|gb|EEU37709.1| hypothetical protein NECHADRAFT_24662 [Nectria haematococca mpVI
           77-13-4]
          Length = 386

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 108/346 (31%), Gaps = 53/346 (15%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
              A + I + +   ++ +I  D DVDG  S A++ R L    ++ ++     I  G   
Sbjct: 25  IKAARKFIQECVSAKQRTLIVPDRDVDGLTSGAILERTLVLLGLDKDLISVHTIRKGGRL 84

Query: 138 NPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
           +  +  K + +     I V D GS     L  A ++    IVIDHH  +  E P  AL+ 
Sbjct: 85  DDDVSRKAMADYKPAFIFVLDHGSQQSPPLIDAPHR---AIVIDHHYAEENEHPQDALLV 141

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
                         ++ + +L+ + ++  +++     +   L  L  L  L  +    P 
Sbjct: 142 TADNSPP----VATSSLLTYLICLDLHEEVKE-----ICDWLCVLGTLGELGNMVKWEPP 192

Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
                                        +  +  +    + Y     I+A  R    ++
Sbjct: 193 FPN--------------------------MKPTIEMHKTGIIYQAISLIHAPRRTAACDV 226

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQN------RRLMESAMLEQAEAKVLTQCDDIQQASV 370
                      +    A     L ++      RR +    +   ++       D +   +
Sbjct: 227 TIAW-------KALRAASSPKELTKDKNLVAARREIHEEFMRCNKSAAPRFSADGRVVVI 279

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRS 415
            +    + HP I    A+ L           +     G    S R 
Sbjct: 280 YLSSEAQVHPLIASRWASYLYTDLVEVVLVANEGYSPGMVSFSCRV 325


>gi|71023345|ref|XP_761902.1| hypothetical protein UM05755.1 [Ustilago maydis 521]
 gi|46100721|gb|EAK85954.1| hypothetical protein UM05755.1 [Ustilago maydis 521]
          Length = 576

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 119/401 (29%), Gaps = 22/401 (5%)

Query: 78  CDKAARRIVQ--AIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIV-- 132
             +AA  +    A   S++I++  D D DG +S  +M R L     ++     P RI   
Sbjct: 139 MQEAADFLRACAASSRSDRILLVPDKDADGLSSGVIMYRTLVQALGID-----PSRIDIH 193

Query: 133 ---DGYGPN-PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
               G   +  S  +     GA+ II +D GS +   L      G     ++  +    +
Sbjct: 194 LMTKGSNLSAESQRDSMSKYGAKWIIVLDQGSRNGPPLVPGAENGWKYEHVEAVRTMVVD 253

Query: 189 IPAYALVNPNRLDDLSGQ-GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247
               A   P     L     H        L+  ++ R L  +    L  D +  +    L
Sbjct: 254 HHWLAEGEPGPEGCLMLNACHHKPVATASLLTWVLCRPLWSEETAELAQDRIDYV--AVL 311

Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307
            T+ D+   +  +  +      V +      L + I  +N        ++       +++
Sbjct: 312 GTMGDLSVNVEWDPPFPDLTCEVKKWTK-KRLGSAIALLNAPRRTPDFDVITAWSALLSS 370

Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN--RRLMESAMLEQAEAKVLTQCDDI 365
              +   +  +    +   +  +M+A++ +       +   +  +              I
Sbjct: 371 KSPLTILDPATNRHAARLYEARDMVALETERCTHTPPKFSKDGRVALLRITSAYQVHPSI 430

Query: 366 QQASVIVVEGDRWHPGIVGL--LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423
                  ++       +         L     R +       +   I    +       +
Sbjct: 431 ATRWTGALKSKNLQVVMCANDGYNQGLVNFSCRIAQVAKKRGEEVNIIQVLNSYADTDPE 490

Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464
                 +        GH  A+G    + +F +  +  Q   
Sbjct: 491 WKKEVTDALGGNAFNGHPQASGGIFPKEHFDKFYELMQIGV 531


>gi|84488840|ref|YP_447072.1| putative single-stranded-DNA-specific exonuclease [Methanosphaera
           stadtmanae DSM 3091]
 gi|84372159|gb|ABC56429.1| putative single-stranded-DNA-specific exonuclease [Methanosphaera
           stadtmanae DSM 3091]
          Length = 455

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 20/196 (10%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L   D+A   +   I     + I    D DG  S  +    +       ++ I  R+ 
Sbjct: 8   YLLNRADEACNLLRLHIEKGHVVRIISHNDADGLTSAGIFANAIKKAGGKFHITILPRLR 67

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           D        +++      +L I  D GS + +++        DVI+ DHHQV     P  
Sbjct: 68  DS------NVKELNKSRYKLFIFSDMGSGNLESIS---KLKGDVIIADHHQVPEGVNPEI 118

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252
            + N   +       ++              + +       L+       +L  LA    
Sbjct: 119 QVDNKEIIHVNPHIFNIDGT-----------KEVSGSGLSYLSVHGYEYYELAGLALTGA 167

Query: 253 VVPLIGLNRAYVVKGL 268
              +   N    +  L
Sbjct: 168 YGDMQFKNGPQGINKL 183


>gi|110669551|ref|YP_659362.1| single-stranded-DNA-specific exonuclease [Haloquadratum walsbyi DSM
           16790]
 gi|109627298|emb|CAJ53788.1| single-stranded-DNA-specific exonuclease [Haloquadratum walsbyi DSM
           16790]
          Length = 489

 Score = 61.3 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 12/205 (5%)

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125
              +P P +       A+R+  A    E++++    D DG  S A+ ++ L    +    
Sbjct: 11  SDTIPVPELEQKATACAKRLRAA----ERVLVASHIDADGLTSAAIAVQALKRADIQCEA 66

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQV 184
              +++  G       +++        ++  D GS   D +      G  + ++ DHHQ 
Sbjct: 67  VFANQLDAG------EIKRIAASKYDTVLFTDFGSGQLDIIDPYVRNGDFEAVIADHHQP 120

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
                   A      L+ L       +         ++ + L  D     N DL +L  +
Sbjct: 121 AMTHDDNPAFSLQYHLNPLLVGIDGASQLSGAGASYILAQALESDTTETDNRDLAALAVV 180

Query: 245 VALATVCDVVP-LIGLNRAYVVKGL 268
            A+  +      L G N A V +G+
Sbjct: 181 GAVGDMQSSTDGLTGANAAIVEQGI 205


>gi|284162244|ref|YP_003400867.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM
           5631]
 gi|284012241|gb|ADB58194.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 429

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 75  LTDCDKAARRI-VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           + D  KA  R  ++ +   + + IF  YD DG  + A++   L     +  +    R + 
Sbjct: 1   MLDILKAIAREGIKFVEKHDFVRIFTHYDPDGITAGAIIATALIRLGKDFQV----RFLK 56

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           G        +        L+I  D GS   D +        D IV+DHH           
Sbjct: 57  GLNEEVEYDKD------DLVILSDMGSGYPDVVSKIE---ADTIVVDHHIPTGRIEKDNL 107

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +     L  L G   L A+G  ++   ++                  L  +  +  + D 
Sbjct: 108 VHINPHLAGLDGTYELSASGTAYVFANVLGDN-------------RDLAGIALVGAIGDK 154

Query: 254 VPLIGLNRAYVVKGLMVARR 273
             + G N   + +G+     
Sbjct: 155 QKMKGGNAEILREGIESGYI 174


>gi|282163338|ref|YP_003355723.1| single-stranded DNA-specific exonuclease RecJ [Methanocella
           paludicola SANAE]
 gi|282155652|dbj|BAI60740.1| single-stranded DNA-specific exonuclease RecJ [Methanocella
           paludicola SANAE]
          Length = 469

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/383 (13%), Positives = 106/383 (27%), Gaps = 35/383 (9%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +   +    KAA    + I   ++ ++    D DG  +  +M + L           P  
Sbjct: 5   NGDTMQRFRKAAELCAERIKKCDEAVVVSHIDADGLTAAGIMCKALDRLGR------PHE 58

Query: 131 IVDGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
                  + + ++   +  A +L+I  D GS +  ++      GID +V DHH+    E 
Sbjct: 59  EKFVKKLDDAALKGIADFSAGKLVIFTDLGSGALASI---KALGIDAVVTDHHRPAPVEY 115

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
             +   +   L + S +        +  + +     L     V    DL  +     +  
Sbjct: 116 EYHMNPHLYGL-NGSTEISGAGVSFLLSLCLGDNVDLGSLAIVGAVGDLQDMRTNALVGV 174

Query: 250 VCDVVPLIGLNRAYVV-KGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSIN 306
              ++ L          K + +  RQ  P  K L    +   P     E+          
Sbjct: 175 NRQILDLATSKGYIAYEKDIKLFGRQTRPVYKLLQYSSDPFIPGLSGCEDACIAFIEGAG 234

Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366
              +         L   +       L             ++  + E           +++
Sbjct: 235 IPIKKDNWRRWIDLGQGEKKSLTSRLFQYCMACGMPSHKIQRLVGEVYTLLKEEPGTELR 294

Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR---------SIE 417
            AS               LL A  +  +     A+   + G+     R          + 
Sbjct: 295 DAS-----------EYSTLLNATARYDYADVGLAVCMGDRGEAFHYARDLLESHRHNLVN 343

Query: 418 GFDIGKMVSFAVEEGILVKGGGH 440
           G ++            L     H
Sbjct: 344 GLNL-VADKGVCRMNNLQYFHAH 365


>gi|315230660|ref|YP_004071096.1| single-stranded-DNA-specific RecJ-like exonuclease [Thermococcus
           barophilus MP]
 gi|315183688|gb|ADT83873.1| single-stranded-DNA-specific RecJ-like exonuclease [Thermococcus
           barophilus MP]
          Length = 472

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 89/266 (33%), Gaps = 25/266 (9%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           + A  I   I     I I    D DG  + A++ + ++    N ++ I          + 
Sbjct: 12  EGAELIKMHIELGHTIRIISHRDADGITAGAILAKAIAREGGNFHLSI------VKQLSE 65

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNP 197
            L+ +  NE  ++ +  D GS S   ++        V++ DHH  +    +   + LVNP
Sbjct: 66  DLITELANEKQKIYVFSDLGSGSIKLIE-KHLSDASVVIADHHPPEDGEIKNDNHILVNP 124

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            +    S    L  +GV + V   I    R             L  L  +  V D+  + 
Sbjct: 125 TQFGADSV-RDLSGSGVAYFVAREINEKNR------------DLSYLALVGAVGDMQEID 171

Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317
           G      +  +  A+      ++  I      +    + L Y   P I      G+    
Sbjct: 172 GQFHGMNLDIIEDAKELDLIEIRKEIRLYGRETRKLYQMLAYATNPEI--PEITGDERKA 229

Query: 318 SRLLISDDSQELEMLAMKLDVLNQNR 343
              L +      +M   +L    + R
Sbjct: 230 IEFLRAKGFDP-DMYYWQLREEEKKR 254


>gi|88603522|ref|YP_503700.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1]
 gi|88188984|gb|ABD41981.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1]
          Length = 468

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 67/473 (14%), Positives = 137/473 (28%), Gaps = 93/473 (19%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L D   AA     A+ + E++ I    D DG +S A++ + LS   +  +        
Sbjct: 2   SLLEDIRAAAD----AVRSCEEVTIISHIDADGISSEAILAQALSRDGIRVST------T 51

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPA 191
                +P  +++ I + + L I  D GS     L     +    I+IDHH    +E    
Sbjct: 52  FVRQLDPLTLDQ-IPDDSSLKIFSDLGSGQQQMLLEKGLEPSRTIIIDHHVSQPAEHGDP 110

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD--LVALAT 249
           +  VN            + AAGV +L+   +  I     K+ +  ++  ++D   + L  
Sbjct: 111 FIEVNCLNHG----HEKMSAAGVSYLLARELDSINTDLAKLAIIGNIGDMMDREHLCLTG 166

Query: 250 VCDVVPLIGLNRAYV---VKGLMVARRQGNPGLKALIERVNIS----------------- 289
               +   G+ +  V      L +      P  ++L    ++                  
Sbjct: 167 PAREILQDGVRQGTVELWEHDLNIYGISTRPLPQSLAYSDDMDIPGVSRDPDGAGKFLER 226

Query: 290 ---------SPITAENLGYMIGPSINAGGRIGESNLG---------SRLLISDDSQEL-E 330
                         E+L +     +           G           L   +D  +   
Sbjct: 227 IGITPIQPNRWPVWEDLSFDQKQQVCCAVIEQMVAHGKDTGRLFADHYLFPDEDRHQASL 286

Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA-- 388
             A +   +  +    +   L  A  +        +   ++     +    ++ +     
Sbjct: 287 RNASEFATMLNSCGRWQRPELGGAICRGDRMVAYREAEHMLRNHRSKIREVMLYITETGV 346

Query: 389 ---------RLKEKFGRPSFAISFE--------------------EDGKGIGSGRSIE-- 417
                     +  +F      I                       +      S R+    
Sbjct: 347 TELSHMLYIHVGGRFPDTIVGIGAGMALSRLNPEKPILIMCEDSLDPSMTKISMRTRPEV 406

Query: 418 ---GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI 467
              G D+ + ++ A E      GGGH +AAG  + +       +   +     
Sbjct: 407 VSKGVDLQQALTLACEGREGCSGGGHRIAAGAFIPKEEERAFIEDVNRILAQQ 459


>gi|57641187|ref|YP_183665.1| ssDNA-specific exonuclease [Thermococcus kodakarensis KOD1]
 gi|57159511|dbj|BAD85441.1| ssDNA-specific exonuclease [Thermococcus kodakarensis KOD1]
          Length = 477

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 88/285 (30%), Gaps = 22/285 (7%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           + A  I   I     I +    D DG  + A++ + ++       + I          + 
Sbjct: 12  EGAELIKMHIELGHTIRLISHRDADGITAGAILAKAVAREGGTFQLSI------VKQVSE 65

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+++   E  ++ +  D GS S + ++   N    V+   H   K        ++    
Sbjct: 66  ELIDQLAREKREIYVFSDLGSGSIELIEEKLNFATVVVADHHPPEKDSFSTDSHVLVNPV 125

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
               +    L  +GV + V   + R  R             +  +  +  V D+  + G 
Sbjct: 126 PFGANSVRDLSGSGVAYFVAREMNRKNR------------DMAYVAIVGAVGDMQEIDGT 173

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
                ++ +   +  G   ++  +      S    + L Y   P I      G+      
Sbjct: 174 FHGLNLEIIEDGKELGILEVRKELRLFGRESRPLYQMLAYATNPEI--PEITGDERKAIE 231

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
            L +                 + R+L E+ ++   +     +  D
Sbjct: 232 WLRAKGFDPEMKYWQ--LREEEKRKLHEALLVHMIKHGAPKEAID 274


>gi|20093501|ref|NP_613348.1| single-stranded DNA-specific exonuclease [Methanopyrus kandleri
           AV19]
 gi|19886333|gb|AAM01278.1| Single-stranded DNA-specific exonuclease [Methanopyrus kandleri
           AV19]
          Length = 340

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 112/339 (33%), Gaps = 71/339 (20%)

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI--PDRIVDGYGPNPSLMEKFINE 148
             E++ +  D DVDG AS A++   L++   +  +Y   P    +            I  
Sbjct: 19  KDERVAVISDIDVDGLASAAILGHVLNNVGADFVLYFSPPANFEEVVS--------GIAP 70

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
              ++I  D GST   A+  A ++G  VIV+DHHQV  +  P   + +            
Sbjct: 71  ECDVLIAADLGSTGETAIHDAKSEGCRVIVVDHHQVLEDVRPDVFIHDTR---------- 120

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
           LCAA + +   V ++                   DL  +A               + + L
Sbjct: 121 LCAAELCYWATVDLHER-----------------DLRLIAAYAAFTDYAEEYSRVLRETL 163

Query: 269 MVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
            +  R+      +L++                      A  R+   +     L   ++  
Sbjct: 164 KMYDRRKVYTEASLLDY---------------------ALIRMDGEDRRELALKLPETP- 201

Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEA-KVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387
                  +  L++   L   AM E+ E  +   +  +     V     D  HP + G +A
Sbjct: 202 -------VSELDEVYELARDAMAEEHEVLRRAREVAECLNEVVAYAIMDDVHPAMTGRVA 254

Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426
           + +     RP              S R +EG +I    +
Sbjct: 255 SHVAGVKRRPVGVCVRRG----KISARVVEGEEIDVARA 289


>gi|212223666|ref|YP_002306902.1| ssDNA-specific exonuclease [Thermococcus onnurineus NA1]
 gi|212008623|gb|ACJ16005.1| ssDNA-specific exonuclease [Thermococcus onnurineus NA1]
          Length = 476

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 100/291 (34%), Gaps = 27/291 (9%)

Query: 78  CDKA---ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
            +KA   A  I   I     I I    D DG  + A++ + +     +  + I  ++ +G
Sbjct: 7   LEKAREGAELIKMHIELGHTIRIISHRDADGITAGAILAKAILREGGSFQLSIVKQLSEG 66

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                 L+++   E  ++ +  D GS S + ++    +G  V+V DHH  +  E    + 
Sbjct: 67  ------LIQELAAEKHKIYVFSDLGSGSIELIEKY-LEGATVVVADHHPPEKNEFSTDSH 119

Query: 195 VNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
           +  N +    +    L  +GV + V   +    R             L  +  +  V D+
Sbjct: 120 LLVNPVPFGANSVRDLSGSGVAYFVAREMNEKNR------------DLAYIAIVGAVGDM 167

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
             + G      +  +   +R G   ++  +      S   A+ L Y   P I      G+
Sbjct: 168 QEIDGTFHGMNLDIIEDGKRLGILEVRKELRLFGRESRTLAQMLAYATNPEI--PEITGD 225

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
                  L +                 + RRL ++ ++   +     +  D
Sbjct: 226 DRKAIEFLRAKGFDPDMKYWQ--LREEEKRRLHDALVIHLIKHGAPKEAID 274


>gi|91774252|ref|YP_566944.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91713267|gb|ABE53194.1| Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase
           [Methanococcoides burtonii DSM 6242]
          Length = 437

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/456 (15%), Positives = 136/456 (29%), Gaps = 83/456 (18%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           +    + A +I   I       +    D DG +S A++ + L   ++  ++ I  R+ D 
Sbjct: 4   MQKISELAEQIADIIEEYSHARVISHNDADGISSAAIICQALLRKNIPYHLTIVSRLEDS 63

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                +           ++I  D GS   D +        D IVIDHH     + PA A+
Sbjct: 64  VAEMINET----TNEGDIVIFCDMGSGQPDIIGKVL---HDTIVIDHH-KPVGDSPAKAM 115

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLV------------LIYRILRQDNKVPLNFDL---- 238
           +NP+         HLC A   +LV               I   +           +    
Sbjct: 116 INPHMFGIDGA-VHLCGATTTYLVAKGLDHENVDLAGIAIAGAVGDKQLFETANKIILDE 174

Query: 239 ----------------------------LSLLDLVA----LATVCDVVPLIGLNRAYVVK 266
                                          LD+      + +  D++ + G   +    
Sbjct: 175 AVEAGVISIKKGLKVGSGDIADILENTPEPYLDITGDREKIDSFLDMLEIHGDIDSMDSD 234

Query: 267 GLMV------ARRQGNPGLKALIERVNISSPITAENL--GYMIGPSINAGGRIGESNLGS 318
            L         +       +A+   V     +  E +   Y +   +N  G+     L  
Sbjct: 235 KLQKLISTIVLKLTKRASPEAIDAAVGDVYILNNEVVKNVYDLVAIMNTCGKKKVPGLAL 294

Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378
            L + DD             L++ + +   +           +    +  S+  + GD  
Sbjct: 295 ALCMRDD-----------STLDEAKEMTTQSQKAIVNDINKAEGLLQKGKSIYYLIGDDL 343

Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-----EGFDIGKMVSFAVEEGI 433
                 + +  ++       F    + +GK   S R       +G D+   +  A  + +
Sbjct: 344 -ESTGMIASTVIRYIHPDMPFVAINKVEGKVKISSRGTRELVSKGLDLAYAMRTA-ADAV 401

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469
             +GGGH +A+G +VE                  + 
Sbjct: 402 GGQGGGHNIASGASVEPEKIEEFIALVDDIVAEQLS 437


>gi|319938091|ref|ZP_08012491.1| hypothetical protein HMPREF9488_03327 [Coprobacillus sp. 29_1]
 gi|319806997|gb|EFW03636.1| hypothetical protein HMPREF9488_03327 [Coprobacillus sp. 29_1]
          Length = 268

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 15/205 (7%)

Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE----EDGKGIGSGRSIEGFDI 421
            +  + ++     H G++G+LA+    + G P+F ++            GSGR +E  ++
Sbjct: 3   DKHKINLIVQKELHEGVLGILASHYTNQNGYPTFVLTDCTIESGQKAWKGSGRGVEELNL 62

Query: 422 GKMVSFAVEE-GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480
             ++S   +E G L   GGHA A G+TV   N  +      +   + +        +   
Sbjct: 63  YDILSQVQDETGTLYTFGGHAGAVGVTVLDENIEQFKSKITEIVEDRLAHSSYAKNYIQL 122

Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP-NHKLQSIRVVNLAHLQMTFESQDSE 539
             +        + + ++   P+G G   P+     N K  ++      H +   +  D  
Sbjct: 123 TTIEQRK---EIAEAVKELKPFGNGLRLPIVELSYNVKEINLYY-KSKHAKFLHKEPDKS 178

Query: 540 TLQAIA-----FRVYGTPLGEFLMQ 559
             + I      +   G    + L  
Sbjct: 179 GTKTIWNNFELWNYGGLEEAKILCN 203


>gi|307254247|ref|ZP_07536088.1| hypothetical protein appser9_4980 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306862794|gb|EFM94747.1| hypothetical protein appser9_4980 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
          Length = 56

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             E        AI F        +  +    K   +   L +N ++G+K  QLR+ + 
Sbjct: 1   MVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYKLDINEFKGNKNLQLRIENI 54


>gi|46114980|ref|XP_383508.1| hypothetical protein FG03332.1 [Gibberella zeae PH-1]
          Length = 485

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 73/223 (32%), Gaps = 23/223 (10%)

Query: 52  VSIDYAKDFLN-PSIRL-----LMPDPLILTD-CDKAARRIVQAIYNSEKIMIFGDYDVD 104
           V+ D   ++   PS R      + P P    D  + A   I + +  S+  +I  D DVD
Sbjct: 67  VTTDKLPEYHETPSKRDKDGEIIWPAP---KDQMEAARNFIRECVAASKPTLIIPDKDVD 123

Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN-PSLMEKFINEGAQLIITVDCGSTSY 163
           G  S A++ + L    ++  +     +  G   +         +     I  +D GS   
Sbjct: 124 GLTSGAILRKTLILMGLDPELISAYVMKKGLNVHDEESRRDMASYKPSFIFVLDQGSRES 183

Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
             +    ++    +VIDHH  + ++ P  A                       L+  LI 
Sbjct: 184 PPVIDEPHR---ALVIDHHYAEEKDHPKDATFVTACN--------SPPVATSSLLTYLIC 232

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
           R L  D        L ++     L       P     +A   K
Sbjct: 233 RDLHPD-VEETCNWLCAMGVHGDLGNAIKWEPPFPDFKAMFKK 274


>gi|330506679|ref|YP_004383107.1| phosphoesterase, RecJ domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328927487|gb|AEB67289.1| phosphoesterase, RecJ domain protein [Methanosaeta concilii GP-6]
          Length = 481

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 25/207 (12%)

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
            +I   ++I++    D DG  + A++   L   +++               + + +E+  
Sbjct: 26  DSICRQKEILVVSHVDADGLTAAAIICAALDRHNIDYKPLF------FRQLDENALEEVA 79

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
           ++GA L+I  D GS     +     + +  IV DHH+ K+      A +NP+ +      
Sbjct: 80  DQGADLVIFTDLGSGMIQEIL---ERNLQAIVADHHKPKACPAQPLAHINPHLVGADGAN 136

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
             L  +G  FL+   +      ++ +     + ++ DL  +A+      LIGLNR  +  
Sbjct: 137 Q-LSGSGSAFLLARALASSPGANDDLAALAVVGAVGDLQDMASG----QLIGLNRYILDI 191

Query: 267 G-----------LMVARRQGNPGLKAL 282
           G           + +  +Q  P  K L
Sbjct: 192 GSRAGAVHFSRDIKLFGKQTRPVYKML 218


>gi|150399730|ref|YP_001323497.1| phosphoesterase domain-containing protein [Methanococcus vannielii
           SB]
 gi|150012433|gb|ABR54885.1| phosphoesterase RecJ domain protein [Methanococcus vannielii SB]
          Length = 467

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 24/188 (12%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L++  KA + + +     + I++    D DG  S  ++ + L   +++A      +I   
Sbjct: 4   LSNLKKAVKTLRK--NRDKSILVCTHIDTDGLNSRIILEKVLERLNISAEFLFLRQID-- 59

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ---YATNQGIDVIVIDHHQVKSEEIPA 191
                      I     LII  D GS   D ++   +   +   +I++DHH V +E+IP 
Sbjct: 60  -----YETIDEIPFEHDLIIFADLGSGQIDLIKEKLFEIKKNPHIIILDHHIVSNEKIPE 114

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +      D + G   +C AGV +L   +                   L     L  V 
Sbjct: 115 NIINVNPHNDGIDGGKEICGAGVSYLFAKVCN------------PRFTDLAKYAVLGAVG 162

Query: 252 DVVPLIGL 259
           DV  L G 
Sbjct: 163 DVQNLEGN 170


>gi|288932464|ref|YP_003436524.1| phosphoesterase DHHA1 [Ferroglobus placidus DSM 10642]
 gi|288894712|gb|ADC66249.1| phosphoesterase DHHA1 [Ferroglobus placidus DSM 10642]
          Length = 453

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 108/345 (31%), Gaps = 38/345 (11%)

Query: 83  RRIVQAIYNSEKI------MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             I +A   SE+I      +I    D DG  S A+    LS    +A +    ++ +   
Sbjct: 2   DLIKKAYEISERIKKEDEFLIVTHIDADGITSGAIAFETLSRIGKDAKIIFLKQLDE--- 58

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
                  + I +  + +   D GS +   L       ++ ++ DHH  +          +
Sbjct: 59  ----KAAEKIADENRFVWLTDLGSGNISLLLRRK---LEFVISDHHVPEMTYKWQLNPHD 111

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV--V 254
                       L  +   +LV   +           LN+DL  L  + A+  + D    
Sbjct: 112 FGYDGSY----DLSGSTTTYLVSRCL----------GLNYDLSPLAIVGAVGDLQDSREA 157

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI-GPSINAGGRIGE 313
            L+GLNR  + + +          L+   ++      +        + G S N  G I  
Sbjct: 158 KLVGLNRFVLEEAIKYGYLNAIKDLRFFGKQTRPVYKMLEYTFDPYLPGISGNEKGAIEF 217

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVL---NQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
            +     +  +D      L+ +          R  ME+    +   K++ +   + +   
Sbjct: 218 LSSLGVEVKREDWVRWIDLSREEKRKVVSGIVRVCMEAGYSYELIKKIVGETYVLLEEEE 277

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
                D        LL A  +  F      +   +  K     R+
Sbjct: 278 GTELRDAM--EYSTLLNATARYGFEEVGLRVCLGDRDKHFRKARA 320


>gi|213582646|ref|ZP_03364472.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 102

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLL 386
           E  +LA +LD LNQ R+ +E  M  +A           +       +    WH G+VG+L
Sbjct: 4   EARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGIL 63

Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425
           A+R+KE+F RP  A +   DG   GSGRSI+G  +    
Sbjct: 64  ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAS 102


>gi|298675921|ref|YP_003727671.1| phosphoesterase RecJ domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288909|gb|ADI74875.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 471

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 30/199 (15%)

Query: 75  LTDC-DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           + +  + A + + + I   + + +    D DG  S  ++ + L    +N +     ++ +
Sbjct: 7   MQEMRNHAVKCVEE-ITKYDTVHVVSHIDADGLTSAGIICKALQRRGINYSTRFLKQLDE 65

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
                   +E   +E  +L+I  D GS   + +    + GI+ ++ DHHQ K +      
Sbjct: 66  S------AIEDIASENHELVIFTDLGSGMIEEI---KSAGINAVISDHHQPKGDTKILQT 116

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
            +NP+    ++G   L  +G  ++    +  +L  +N          L DL  +    D 
Sbjct: 117 HLNPHIFG-VNGSSELSGSGTTYI----LASVLGDNN---------DLADLAIVGATGDF 162

Query: 254 VPLI-----GLNRAYVVKG 267
                    G+NR  + +G
Sbjct: 163 QHSKKGYLTGINRLILQEG 181


>gi|11498342|ref|NP_069569.1| hypothetical protein AF0735 [Archaeoglobus fulgidus DSM 4304]
 gi|2649876|gb|AAB90503.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 457

 Score = 57.5 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 19/198 (9%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +AA  +   I  +E++++    D DG  +  +    L    V + +    R V     
Sbjct: 5   LKRAAE-LAGRILKNEEVLVVTHIDADGITAGTIAHTSLLRAGVESGI----RFVKQLDE 59

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +     + I +    +   D GS   + L      GI+  + DHH  +S        +NP
Sbjct: 60  SEI---EAIKDENTFVWFTDIGSGVLNMLD-----GIEFAITDHHLPQSHHP---MQLNP 108

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD--VVP 255
           +          L  A   +LV   +       +    N DLL +  + A+  + D     
Sbjct: 109 HDFGYDGAF-ELSGATTTYLVSKYLRNGRTLFDYENDNSDLLPISIVGAVGDLQDSRWGM 167

Query: 256 LIGLNRAYVVKGLMVARR 273
           L GLNR  V++GL   + 
Sbjct: 168 LKGLNREIVMEGLRKKQI 185


>gi|11498306|ref|NP_069533.1| hypothetical protein AF0699 [Archaeoglobus fulgidus DSM 4304]
 gi|2649915|gb|AAB90540.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 438

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 29/190 (15%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           ARR    +   + I I+  +D DG ++ A++ + L       ++     + + +      
Sbjct: 14  ARRAADLVARHDFIRIYTHHDADGISAGAIIAKALLKAGKAFHITFLKGLNEPFE----- 68

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNR 199
                 E  +L++  D GS   D +        DV+++DHH    E  P    A VNP+ 
Sbjct: 69  -----YEQGELLLFADMGSGYADLISQV---DTDVVILDHHIPNGEIRPKRNLAHVNPHL 120

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           +        L A+GV +     + R                L  +  +  + D   ++G 
Sbjct: 121 VGMDGTF-ELSASGVCYFFANELGRN-------------RELASVALIGALGDKQRMVGG 166

Query: 260 NRAYVVKGLM 269
           N   +  GL 
Sbjct: 167 NEEILRNGLE 176


>gi|119719428|ref|YP_919923.1| phosphoesterase domain-containing protein [Thermofilum pendens Hrk
           5]
 gi|119524548|gb|ABL77920.1| phosphoesterase, RecJ domain protein [Thermofilum pendens Hrk 5]
          Length = 465

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A  + + + + E +++   YD DG +S++LM+ FL    V  +     R+V+    +P  
Sbjct: 12  AEFMSKLLESREWVLVVSHYDADGLSSLSLMLYFLWSHGVPFHA----RLVEQ--VDPRT 65

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           +E+         I +D GS     ++     G ++++IDHH   S +     +       
Sbjct: 66  LEELPLGEYDYAIFLDLGSGYKHLIERYAE-GKNILLIDHHVPSSPKGEECCVEINPYRV 124

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
            L+G     A+ + +L+L  +   + +   V L   L   LDL
Sbjct: 125 GLNGSEEASASTLTYLLLRSLDEKVEKMVHVALVGALGDRLDL 167


>gi|240102921|ref|YP_002959230.1| recJ-like single-stranded exonuclease recJ-like protein (recJ)
           [Thermococcus gammatolerans EJ3]
 gi|239910475|gb|ACS33366.1| recJ-like single-stranded exonuclease recJ-like protein (recJ)
           [Thermococcus gammatolerans EJ3]
          Length = 476

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 90/285 (31%), Gaps = 22/285 (7%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           + A  I   I     I +    D DG  + A++ + ++    +  + I          + 
Sbjct: 12  EGAELIKMHIELGHTIRLVSHRDADGITAGAILAKAIAREGGSFQLSI------VKQVSE 65

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+++   E   + +  D GS S + +    +    V++  H   + +      L+    
Sbjct: 66  ELLKELAEERRDVYVFSDLGSGSIELIDKYLDFATVVVIDHHPPEREKFSVDSHLLVNPV 125

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
               +    L  +G  + V   + R  R+            L  +  +  V D+  + G 
Sbjct: 126 PFGANSVRDLSGSGAAYFVAREMNRANRE------------LAYIAIVGAVGDMQEIDGT 173

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
                +  +   +  G   ++  +      S    + L Y   P I      G+      
Sbjct: 174 FHGMNLDIIEDGKELGILEVRKELRLFGRESRPLRQMLAYATNPEI--PEITGDERKAIE 231

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
            L +      +          + +RL ++ +L   +  V  +  D
Sbjct: 232 WLRARGFDPDKHYWQ--LREEEKKRLHDALVLHMIKHAVPKEMID 274


>gi|161529017|ref|YP_001582843.1| phosphoesterase DHHA1 [Nitrosopumilus maritimus SCM1]
 gi|160340318|gb|ABX13405.1| phosphoesterase DHHA1 [Nitrosopumilus maritimus SCM1]
          Length = 473

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
            ++   I + + I +    D DG  S +++ + L     N        +      + +++
Sbjct: 14  DKVTDCIRSKKSIFVTTHIDCDGLTSGSIITKALIRAGANCT------VRTSKEFSKNVV 67

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           + F  +     I  D G      L      G + IV+DHHQ+  EEI    ++N  +   
Sbjct: 68  DSFKTDSRDFHIVTDLGGGFGKDLN--ETLGDNWIVLDHHQIPDEEIENPNVINAWKYGI 125

Query: 203 LSGQGHLCAAGVVFLVLVLIYRI 225
             G   +CA G+ +L  + +   
Sbjct: 126 DGGL-EICAGGMAYLASMALDEK 147


>gi|304313788|ref|YP_003848935.1| single-stranded-DNA-specific exonuclease [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587247|gb|ADL57622.1| predicted single-stranded-DNA-specific exonuclease
           [Methanothermobacter marburgensis str. Marburg]
          Length = 458

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 69  MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           +PD  IL    +A++ + + +     I +    D DG ++  ++ R +S  +   ++ I 
Sbjct: 13  LPD-SILKRGSEASKLLEEHLEKGSIIRVISHNDADGLSAAGVVARAISSRNGQFHISIL 71

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
            R+   +      ++K   E   L    D GS   + +        D+IV DHHQ    E
Sbjct: 72  SRLRKEF------IKKLGREKYSLFFFCDMGSAYLEEIS---RLKADIIVADHHQPSEFE 122

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228
             +  +     L  L G   L A+G  +L    I R   Q
Sbjct: 123 ADSNVVHVNPHLHGLDGSRDLSASGAAYLATRNISRNTGQ 162


>gi|282164413|ref|YP_003356798.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Methanocella paludicola SANAE]
 gi|282156727|dbj|BAI61815.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Methanocella paludicola SANAE]
          Length = 435

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 75  LTDCDK----------AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124
           ++D  K          A       I   + + +   +D DG  +  ++   L   ++   
Sbjct: 1   MSDMSKLDELSSLTRPAVN----KIKAQQFVRVVSHHDADGITACGIICHMLQRLNIPFQ 56

Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184
             I   +            + + E  + +I  D GS   D +          +++DHH V
Sbjct: 57  ATIVSNLDHSI--------EKLIEPGEFVIFCDMGSGQPDIV-----NKYQAVILDHHMV 103

Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
              +   +   +   +D  S    +  +GV +     + R++ ++           L  L
Sbjct: 104 LDGQKQIHVNPHLIGIDGGS---EVSGSGVAYS----LARMMGKN---------ADLAGL 147

Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
                + D   ++ +N+  + +G+      
Sbjct: 148 AISGAIGDKQKMVSVNKDILNEGVNSGAIT 177


>gi|207093494|ref|ZP_03241281.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 89

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
           +  + IP+R +DGYG +   +EK     A LIITVD G  +++A ++   +   +I+ DH
Sbjct: 5   HVRIAIPNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDH 61

Query: 182 HQ-VKSEEIPAYALVNPNRLDDLSGQGH 208
           H     E   AYA++NP + D    Q  
Sbjct: 62  HCLHHDEVPDAYAVINPKQPDCDFIQKE 89


>gi|15645053|ref|NP_207223.1| hypothetical protein HP0425 [Helicobacter pylori 26695]
 gi|2313533|gb|AAD07494.1| predicted coding region HP0425 [Helicobacter pylori 26695]
          Length = 417

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 130/417 (31%), Gaps = 56/417 (13%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL------IITVDC--------------------GSTSYDALQYATNQGID 175
           +   +++          ++ +DC                     + +        +    
Sbjct: 76  LNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAANTELQEILLEHFEQC 135

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           +I   H   + + I    +   N  D+     +  A     +   +              
Sbjct: 136 IITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQI---------FQTQT 186

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPIT 293
             L    +L+A+  + D + L   +   +V  L  A+ +         +           
Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDDLDEI 244

Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
           +   G+     INA  R+       G  +     L+      +    + +  + + +R  
Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYN 304

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKF-GRPSFAISFE 404
           +       E++   Q     +  V +++       G+ GL+A    +K+    S  I  +
Sbjct: 305 DIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRD 364

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                 GS R    F         ++   L++ GGH  A GL+  + +F ++    Q
Sbjct: 365 NKDGYSGSARGGGNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQ 415


>gi|294496451|ref|YP_003542944.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292667450|gb|ADE37299.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 455

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 31/191 (16%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I   + + +    D DG  S  ++ + L    +N        +      + +++E   N 
Sbjct: 12  IQKHDSVYVVSHIDADGLTSAGIICKALQRAGINYE------MRFVKQLDDNIIEDIANI 65

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
             +L I  D GS   D++     +GI+ IV DHH            +NP+          
Sbjct: 66  NPELAIFTDLGSGMLDSI---NAKGINAIVSDHH---QPRGEGKYHLNPHLFGANGSYQ- 118

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-----GLNRAY 263
           L  +G  +++   I +                L+D+  +  + D+  L      G+NR  
Sbjct: 119 LSGSGTTYILANEIGQN-------------TDLVDIAMVGAIGDMQHLKKGHLTGVNRLL 165

Query: 264 VVKGLMVARRQ 274
           + +G+      
Sbjct: 166 LEEGVKNGHLS 176


>gi|288560803|ref|YP_003424289.1| ssDNA exonuclease RecJ2 [Methanobrevibacter ruminantium M1]
 gi|288543513|gb|ADC47397.1| ssDNA exonuclease RecJ2 [Methanobrevibacter ruminantium M1]
          Length = 480

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +      + I +SE I I+   D DG +S A++   L     +  + I        
Sbjct: 7   PDMKQKYEEAKELIESSEDIKIYSHTDCDGISSGAILSTILKRIGKDYEIEI-------- 58

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH------QVKSEEI 189
             N  ++E  +    +L I  D GS     +     +   ++++DHH             
Sbjct: 59  -VNLDVLED-LEIEHELTIFSDLGSGQ--PVDKHAKKDSKILILDHHPPLREMDYPDSVE 114

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
             Y  +NP   D + G   +C  G+ +L+
Sbjct: 115 YTYLEINPMFHD-IDGSQEICGGGLCYLL 142


>gi|288561353|ref|YP_003424839.1| ssDNA exonuclease RecJ1 [Methanobrevibacter ruminantium M1]
 gi|288544063|gb|ADC47947.1| ssDNA exonuclease RecJ1 [Methanobrevibacter ruminantium M1]
          Length = 432

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 24/221 (10%)

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144
           + + I N + I +    D DG ++  ++   +       ++ I  R+       P ++  
Sbjct: 2   LKKHIENEDIIRLISHNDADGLSAAGVIANAIKEEGGQFHITIVPRLK------PDVIRD 55

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204
              E  +L +  D GS     ++       DVIV DHHQ    E     +     L  + 
Sbjct: 56  VSKEKYELYVFSDMGSAC---IKQLNRLKSDVIVADHHQPSEHEPKDNLIHVNPHLFGID 112

Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
           G  HL  AG  +LV+  + +             L  +  + A   +       G+N+   
Sbjct: 113 GSRHLSGAGSSYLVVRNMNKK-----------HLAYMALIGAFGDMQCANRFTGINQLI- 160

Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
              L   +  GN  L   ++ V+ +     +++ Y + P++
Sbjct: 161 ---LKDGQEAGNLELHEDLKIVSKAQEPLYKSIAYTLNPAL 198


>gi|294496122|ref|YP_003542615.1| exonuclease RecJ [Methanohalophilus mahii DSM 5219]
 gi|292667121|gb|ADE36970.1| exonuclease RecJ [Methanohalophilus mahii DSM 5219]
          Length = 431

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146
           + I    ++ +    D DG  + A+M   L    +  +  I  R+ +    N        
Sbjct: 4   EKISEYSRVRLISHNDADGITAAAVMCHALLREDIVFHASIVSRLDE----NVVETVNNS 59

Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206
            +   L++  D GS   + ++       D I+IDHH     E  AY +VNP+  D     
Sbjct: 60  TDNGDLVLFCDMGSGQPELIEKVK---NDTIIIDHH-APVGETTAYVMVNPHLADIDGAY 115

Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266
            ++CA+   ++V   +              +   L  L     + D       N   + +
Sbjct: 116 -YMCASTTAYVVATEMN------------PENKELAGLAIAGAIGDKQLFDRENGLILKE 162

Query: 267 GLMVARRQGN 276
           G+        
Sbjct: 163 GIESGSVSIR 172


>gi|310800624|gb|EFQ35517.1| DHH family protein [Glomerella graminicola M1.001]
          Length = 459

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 17/183 (9%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDG 134
            + A   I + +   +  +I  D D DG AS A++ R L    ++      Y+P +  + 
Sbjct: 69  MEAARAFIRECVSAGKPTLIVPDKDADGLASGAILERTLVLLGLDPSLITAYLPPKGKNV 128

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +  +     +  +     I  +D GS S   L    ++G   IVIDHH     + P  A 
Sbjct: 129 HDESCRS--EMASHEPAYIFILDQGSRSSPPLIDGPHRG---IVIDHHHALEGDHPEGA- 182

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
           ++    D         ++ + +L+   ++     D        L  +     L       
Sbjct: 183 LHVTACDSPPV---ATSSLLTYLICRDLH-----DGVEGACDWLCVMGTHGDLGNTLKWE 234

Query: 255 PLI 257
           P  
Sbjct: 235 PPF 237


>gi|116754737|ref|YP_843855.1| phosphoesterase domain-containing protein [Methanosaeta thermophila
           PT]
 gi|116666188|gb|ABK15215.1| phosphoesterase, RecJ domain protein [Methanosaeta thermophila PT]
          Length = 469

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 33/258 (12%)

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145
            + I  SE +++    D DG  +  ++   LS   ++   Y P         +   +E+ 
Sbjct: 18  AEVISRSEDVLVVSHIDADGLTAAGVICTALSRKGID---YTPLFFK---QLDSRAIERI 71

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
            + G+ L+I  D GS     +      GI  ++ DHH+  S EI    +     L    G
Sbjct: 72  ADAGSDLVIFTDLGSGMIQEISSF---GIRAVIADHHRPGSAEIYRGIVHINPHLLGGDG 128

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP--LIGLNRAY 263
             H+  +G  F++   + R          N DL +L  + A+  + D+    L+GLNR  
Sbjct: 129 ATHISGSGTAFILANAMGR----------NEDLSALAVVGAVGDLQDLSSGRLVGLNRRI 178

Query: 264 VVKG-----------LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312
           +  G           L +  +Q  P  K L    +   P  + +    I      G R+G
Sbjct: 179 IEVGSRAGVLSFGPDLKLFGKQTRPVFKMLEYSTDPYIPGLSGDEEACISFLKEIGIRLG 238

Query: 313 ESNLGSRLLISDDSQELE 330
                 R +  D  +   
Sbjct: 239 GERWR-RWIDLDQDERAR 255


>gi|147919692|ref|YP_686563.1| putative single-stranded DNA-specific exonuclease [uncultured
           methanogenic archaeon RC-I]
 gi|110621959|emb|CAJ37237.1| putative single-stranded DNA-specific exonuclease [uncultured
           methanogenic archaeon RC-I]
          Length = 461

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 117/355 (32%), Gaps = 50/355 (14%)

Query: 78  CDK---AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
            ++   AA R    I  S+++++    D DG  S  ++   L       +     ++   
Sbjct: 1   MERFSQAAERCADLIKKSDELLVVSHIDADGLTSAGIICTALQRLGKGYDTRFVKKLDA- 59

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                +L +     G + +I  D GS + D +      G+  ++ DHHQ K  + P +  
Sbjct: 60  ----EALKQIAAIAGKRTVIFTDLGSGAIDQI---NELGLTAVIADHHQPKPSDYPYHLN 112

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV- 253
            +   L+       +  +GV FL+ + +            N DL SL  + A+  + D+ 
Sbjct: 113 PHLVGLNGA---TDISGSGVTFLLALKL----------GPNEDLSSLAIVGAVGDLQDMR 159

Query: 254 -VPLIGLNRAYVVKG-----------LMVARRQGNPGLKALIERVNISSPI--TAENLGY 299
              L+G+NR  +  G           + +  RQ  P  K L    +   P     E    
Sbjct: 160 TNALVGVNRQILTLGVSGGYLSFEKDIKLFGRQTRPVYKLLQYCSDPYMPGLSGCEEACV 219

Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359
               +     +         L   + ++ +  L             ++  + E       
Sbjct: 220 TFLENAGIPVKAESWRRWIDLSRDEKTRVISSLFQHCMACGMPSHKIQRLVGEVYTLCKE 279

Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR 414
               +++ AS               LL A  + ++     AI   + G+     R
Sbjct: 280 EPGTEMRDAS-----------EFSTLLNATARYEYAETGLAICTGDRGEAFHYAR 323


>gi|332158235|ref|YP_004423514.1| putative ss-DNA-specific exonuclease recj related protein
           [Pyrococcus sp. NA2]
 gi|331033698|gb|AEC51510.1| putative ss-DNA-specific exonuclease recj related protein
           [Pyrococcus sp. NA2]
          Length = 475

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 140/474 (29%), Gaps = 86/474 (18%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
             +A   +   I     I I    D DG  + A++ + L     N ++ I          
Sbjct: 10  IREAVELVKFHIELGHTIRIVSHRDADGITAAAILAKALLREGANVHVSI------VKQV 63

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           +  L+++  +E  ++II  D GS S   ++    +   V+++DHH  +  ++    ++  
Sbjct: 64  SKELLDELKDEEYKIIIFSDLGSGSLGLIEEY-LKEKSVVILDHHPPEDVKLSEKHILAN 122

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILR--------------QDNKVPLNFDLLSLLD 243
                 +    L  +GV +     +    R              Q+N    +   L +++
Sbjct: 123 PVQFGANSVRDLSGSGVTYFFAKELNERNRDLAYIAIVGAVGDMQENDGIFHGMNLDIIE 182

Query: 244 --------------------------LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277
                                     ++A AT  ++  + G  R   ++ L         
Sbjct: 183 DGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEIPEITGDER-RAMEWLRNKGFNPEK 241

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA--- 333
               L E        +   ++        +    IG+  +       D   E    A   
Sbjct: 242 RYWELSEEEKKRLHDLLVIHMIKHGAEKEDIDKLIGDVVISPLYPEGDPRHEAREFATLL 301

Query: 334 -----------------------MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370
                                   K   + +  +  +    +        +  + +   V
Sbjct: 302 NATGRLNMGNLGVAVCMGDEEAYKKAVKMVEEYKREQIEARKWLIQNWDKEVWEGENVYV 361

Query: 371 IVVEGDRWH-----PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFD 420
           + V  +           + + A     +     FA + E      GS R+ E     G+ 
Sbjct: 362 LYVGRNIRDTLVGIAASMAINAGLANPEKPVIVFADTDENPNLLKGSARTTEKALKKGYH 421

Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
           +G+ +  A E     +GGGHA+AAG+ + R           K     V      
Sbjct: 422 LGEALKKASEIVGG-EGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVKGNENQ 474


>gi|15669167|ref|NP_247972.1| hypothetical protein MJ_0977 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2842584|sp|Q58387|RECJ_METJA RecName: Full=Single-stranded-DNA-specific exonuclease recJ
 gi|1591640|gb|AAB98980.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 469

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 38/272 (13%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           +  K A+ +      + KI+I    D DG  S A++ +     +++A+            
Sbjct: 6   ELKKGAKVLQN--NKNNKILIVTHIDTDGLTSRAILQKLAERLNLDADFMFL------KQ 57

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQ------YATNQGIDVIVIDHHQVKSEEIP 190
                +     +   LII  D GS     ++        +++   +I++DHHQ +  +IP
Sbjct: 58  ITIETINDIPFKDYDLIIFADLGSGQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIKIP 117

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
               ++ N L        +C AGV +L    I              DL     L A+  +
Sbjct: 118 KTI-IHINPLTIAKSGAEICGAGVSYLFAKAIN---------NDWIDLAKYAVLGAVGDI 167

Query: 251 CDVV-PLIGLNRAYVV-----------KGLMVARRQGNPGLKALIERVNISSPITAENLG 298
            ++   LIGLNR  +              L +  RQ  P   ++    ++ + +   +  
Sbjct: 168 QNIEGKLIGLNRKILCDAIMNGDVKVKTDLQMYGRQTRPLFVSMRYWADVRTDLLNNDS- 226

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
             I   I +  +  +  +   + +++   E +
Sbjct: 227 -KIIKYIQSINKKYDIEINPTMRLAEIPFEHK 257


>gi|317012804|gb|ADU83412.1| hypothetical protein HPLT_05100 [Helicobacter pylori Lithuania75]
          Length = 417

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 129/412 (31%), Gaps = 42/412 (10%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R V GYG     
Sbjct: 17  DFLREA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNVHGYGFTDLA 75

Query: 142 ME----------------------KFINEGAQLIITVDCG---STSYDALQYATNQGIDV 176
           +                       K   +   L+ + D G   + + +  +         
Sbjct: 76  LNDLLSQPCIFNPKTNQLVRLDHIKNQFQKNPLLFSTDLGADLAANTELQEILLEHFEQC 135

Query: 177 IVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY-RILRQDNKVPL 234
           I+ DHH   + + I    +   N  D+     +  A     +   +   +    + ++  
Sbjct: 136 IITDHHKSFEVDWIDKNKIAYINLNDEKDANYYSGAFTSALVFSQIFQTQTTPLEEELIA 195

Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL-KALIERVNISSPIT 293
              L   +DL       D + ++        + +    +  +  L +   + ++      
Sbjct: 196 ITLLSDRIDL----DHGDNLDMVLNLAPVKHECIQCFFKDKDFSLAQDDSDEISNLYGFN 251

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
             N    +     A    G  +     L+           +    + + +R  +      
Sbjct: 252 CINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPTSDPRLSTFNVKEFKRYNDIKKKMV 311

Query: 354 AEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFEEDGKGIG 411
            E++   Q     +  V +++       G+ GL+A    +K+    S  I  +      G
Sbjct: 312 KESEENAQIFPCNKILVALLDESCSIKVGVSGLVANNFLKKYPFNHSLCIYRDNKDGYSG 371

Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
           S R    F         ++   L++ GGH  A GL+  + +F ++    Q  
Sbjct: 372 SARGDRNF------LSQIKTIPLIQSGGHEEAFGLSFAKEDFKKVMKSLQSL 417


>gi|289192500|ref|YP_003458441.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938950|gb|ADC69705.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 469

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 99/274 (36%), Gaps = 38/274 (13%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
             +  K A+ +      + KI+I    D DG  S  ++ +     +++A+          
Sbjct: 4   WAELKKGAKVLQN--NKNSKILIVTHIDTDGLTSRVILQKLAERLNLDADFMFL------ 55

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ------YATNQGIDVIVIDHHQVKSEE 188
                  ++    +   LII  D GS     ++        +++   +I++DHHQ +  +
Sbjct: 56  KQITIETIDDIPFKDYDLIIFADLGSGQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIK 115

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
           IP    ++ N L        +C AGV +L    I              DL     L A+ 
Sbjct: 116 IPKTI-IHINPLTIGKSGAEICGAGVSYLFAKAINNE---------WIDLAKYAVLGAVG 165

Query: 249 TVCDVV-PLIGLNRAYVV-----------KGLMVARRQGNPGLKALIERVNISSPITAEN 296
            V ++   LIGLNR  +              L +  RQ  P   ++    ++ + +   +
Sbjct: 166 DVQNIEGKLIGLNRKILCDAIMSGDIKVKTDLQMYGRQTRPLFVSMRYWADVRTDLLNND 225

Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330
               I   I +  +  +  +   + +++   E +
Sbjct: 226 S--KIIKYIQSINKKYDIEINPTMRLAEIPFEHK 257


>gi|21226315|ref|NP_632237.1| putative single-stranded-DNA-specific exonuclease [Methanosarcina
           mazei Go1]
 gi|20904562|gb|AAM29909.1| putative single-stranded-DNA-specific exonuclease [Methanosarcina
           mazei Go1]
          Length = 445

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 24/198 (12%)

Query: 75  LTDCDKAARRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           +++ +K       A   I   + + +    D DG  S  +M   L    +   + I  ++
Sbjct: 1   MSELEKLINLAKNAADKIRRHKFVRVISHNDADGLTSAGIMAHALLRAGIPFQLSIASKL 60

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
               G     + + I+   +L+I  D GS   + +      G DV++IDHHQ    + PA
Sbjct: 61  D---GAVIEEVNRSIS-SGELVIFCDMGSGHPELI---KQVGADVVIIDHHQ-PVGQSPA 112

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VN + +          +         L+ R L   N          L  L     V 
Sbjct: 113 KAVVNAHMVGIDGATDISASGT-----CYLVARELGTGNI--------DLAGLAIAGAVG 159

Query: 252 DVVPLIGLNRAYVVKGLM 269
           D       N   + + L 
Sbjct: 160 DRQLFRTANAFILEEALK 177


>gi|21228072|ref|NP_633994.1| single-stranded-DNA-specific exonuclease recJ [Methanosarcina mazei
           Go1]
 gi|20906508|gb|AAM31666.1| Single-stranded-DNA-specific exonuclease recJ [Methanosarcina mazei
           Go1]
          Length = 466

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 31/193 (16%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R  + I     + +    D DG  S  ++   L   + +       R V     +   
Sbjct: 12  AGRCAEKIKKHRSVHVVSHIDADGLTSAGIICTALERGNFDYT----TRFVKQ--LDEKA 65

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           +    +E  +L++  D GS   +   +  ++GI+ ++ DHHQ +         +NP+   
Sbjct: 66  LNTIADENHELVVFTDLGSGMCE---HIKSRGINAVISDHHQPQGTLE---FHLNPHLFG 119

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI---- 257
                  L  +G  +L+   + +                L  L  +  + D+  L     
Sbjct: 120 ANGSY-ELSGSGSTYLLASALGKN-------------RDLSSLAIVGAIGDMQHLKMGQL 165

Query: 258 -GLNRAYVVKGLM 269
            G+NR  + +G+ 
Sbjct: 166 VGINRIILEEGVK 178


>gi|308184767|ref|YP_003928900.1| hypothetical protein HPSJM_05050 [Helicobacter pylori SJM180]
 gi|308060687|gb|ADO02583.1| hypothetical protein HPSJM_05050 [Helicobacter pylori SJM180]
          Length = 417

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 139/417 (33%), Gaps = 56/417 (13%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176
           +   +++          ++ +DC    +  D L ++ + G D                  
Sbjct: 76  INDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGADLVSNIELQKILLEHFEQC 135

Query: 177 IVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           I+ DHH   + + I    +   N  D+     +  A     +   +              
Sbjct: 136 IITDHHKSFEVDWIDKNEIAYINLNDEKDANYYSGAFTSALVFSQI---------FQIQT 186

Query: 236 FDLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPIT 293
             L    +L+A+  + D + L  G N   V+  + V   +         +  V       
Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLNLMPVKHDRIKCFFKDKDLSLVQDDLDGI 244

Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
           +   G+     INA  R+       G  +     L+      +    + +  + + +R  
Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPISDPRLSVFNVKEFKRYN 304

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFE 404
           +       E++   Q     +  V +++       G+ GL+A R  +K+    S  I  +
Sbjct: 305 DIKKKMVKESEENAQIFPCNRILVALLDESCSIKVGVSGLVADRFLKKYPFNRSLCIYKD 364

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                 GS R    F         ++   L++ GGH  A GL+  + +F ++    Q
Sbjct: 365 NKDGYSGSARGGGNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQ 415


>gi|45358110|ref|NP_987667.1| RecJ-like protein [Methanococcus maripaludis S2]
 gi|44920867|emb|CAF30103.1| RecJ related protein [Methanococcus maripaludis S2]
          Length = 431

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 106/283 (37%), Gaps = 30/283 (10%)

Query: 85  IVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
           I + I N +  I I   +D DG  + ++M++ L   + N  M I + +      +   +E
Sbjct: 19  IKEKIENCDGLIRIVTHHDPDGLTAGSIMLKTLLRLNKNVQMTILEHL------SKESVE 72

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNPNRLD 201
           +   E  ++ I  D GS   + +    +   + +++DHH  +V   EI     +NP+   
Sbjct: 73  ELSKENDKMFIFCDMGSGQINLI---NHLQFNAVILDHHPPEVAETEIGNILQLNPHLFG 129

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                  + A+GV +L+                   L    DL  +A V  +  +  L  
Sbjct: 130 ANGA-KEISASGVCYLIAR-----------------LFEYYDLATVAVVGAIGDMQHLPF 171

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
             + K ++   R+            N  +   + ++ Y   P I     I +       L
Sbjct: 172 IGLNKYILNEARKYRYLSVIKDIVYNCYNLPISRSIYYSTQPYIRELDGIDKIKEILEEL 231

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
             +  ++   +A K ++L   +R  ++  L     ++  + +D
Sbjct: 232 SINPEKKGITVAEKENLLEYFKRFNKNDDLIVDRYEINHKLND 274


>gi|254171836|ref|ZP_04878512.1| ssDNA-specific exonuclease [Thermococcus sp. AM4]
 gi|214033732|gb|EEB74558.1| ssDNA-specific exonuclease [Thermococcus sp. AM4]
          Length = 476

 Score = 54.4 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 90/285 (31%), Gaps = 22/285 (7%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           + A  I   I     I +    D DG  + A++ + ++    +  + I          + 
Sbjct: 12  EGAELIKMHIELGHTIRLISHRDADGITAGAILAKAIAREGGSFQLSI------VKQVSE 65

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            L+++   E  ++ +  D GS S + +    +    V++  H   + +      L+    
Sbjct: 66  ELLKELAEERREIYVFSDLGSGSIELIDKYLDFATVVVIDHHPPEREKFSVDSHLLVNPV 125

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
               +    L  +G  + V   + R  R+            L  +  +  V D+  + G 
Sbjct: 126 PFGANSVRDLSGSGAAYFVAREMNRANRE------------LAYVAIVGAVGDMQEIDGT 173

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319
                +  +   +  G   ++  +      S    + L Y   P +   G  G+      
Sbjct: 174 FHGMNLDIIEDGKELGILEVRKELRLFGRESRPLRQMLAYATNPEL--PGITGDERKAIE 231

Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
            L +                 + +RL ++ +L   +     +  D
Sbjct: 232 WLRAKGFDPDRHYWQ--LREEEKKRLHDALVLHLIKHGAPKETID 274


>gi|20089707|ref|NP_615782.1| ss-DNA-specific exonuclease [Methanosarcina acetivorans C2A]
 gi|19914637|gb|AAM04262.1| ss-DNA-specific exonuclease [Methanosarcina acetivorans C2A]
          Length = 476

 Score = 54.4 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 31/193 (16%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R  + I     + I    D DG  S  ++   L     N       R V     +   
Sbjct: 22  ADRCAEEIRKHRSVHIVSHIDADGLTSAGIICTALER--GNFEYT--TRFVKQ--LDEKA 75

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
           ++   +E  + ++  D GS   + +     +GI  +V DHHQ +         +NP+   
Sbjct: 76  LDTIADENHEFVVFTDLGSGMCEQI---KARGISAVVSDHHQPQGT---LDLHLNPHLFG 129

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI---- 257
                  L  +G  +L+   + +                L  L  +  V D+  L     
Sbjct: 130 ANGSY-ELSGSGTTYLLASALGKN-------------RDLSSLAIVGAVGDMQHLKMGQL 175

Query: 258 -GLNRAYVVKGLM 269
            G+NR  + +G+ 
Sbjct: 176 VGINRLILEEGVQ 188


>gi|296109839|ref|YP_003616788.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus
           ME]
 gi|295434653|gb|ADG13824.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus
           ME]
          Length = 454

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 35/234 (14%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L + ++A + I++ +   +K +I    D DG  S  ++ +     +++A+          
Sbjct: 2   LREIERARKFILKNLD--KKFLIVTHVDTDGLTSRVILQKLAERLNLDADYLFLT----- 54

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
               PS +E+       +II  D GS+    L+    +   +I++DHHQ ++ ++     
Sbjct: 55  -QLTPSTVEEVPFNDYDIIIMADLGSSHLSLLKEVRKK---IIILDHHQPENIKLSNIIH 110

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD-V 253
           VNP+     S    LC A V +L+                N DL     L A+  V +  
Sbjct: 111 VNPHLEGRSSL--DLCGASVSYLLARA----------FGNNIDLAKYAILGAVGDVQNIW 158

Query: 254 VPLIGLNRAY-----------VVKGLMVARRQGNPGLKALIERVNISSPITAEN 296
             L GLNRA            V   L +  R   P   +L    ++ + +   +
Sbjct: 159 GRLEGLNRAILSDAILSGDLVVKSDLQLYGRCSRPLYISLRYWSDVRTDLLNND 212


>gi|315425837|dbj|BAJ47490.1| archaea-specific RecJ-like exonuclease [Candidatus Caldiarchaeum
           subterraneum]
          Length = 488

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              + AA RI   +   E I IF   D D  +S  ++   L        +   +RI D  
Sbjct: 13  KQAENAAERIRNWVAQGEFIDIFTHNDADALSSAGIIAAALRREDARFRVRSLNRIDDF- 71

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
                 +       A+ II  D GS     L         V ++DHH+     +P   + 
Sbjct: 72  ----IELFNSGYVEAKCIIFTDMGSGYTSELLPLLG-NRSVAILDHHEPVQASLPPEWVH 126

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                    G   + A+GV + V   +     + + + +   L  L D
Sbjct: 127 VNPHQYGFDGAREISASGVSYFVAKAMNPANIEYSPIAVVGALGDLQD 174


>gi|312216999|emb|CBX96948.1| hypothetical protein [Leptosphaeria maculans]
          Length = 455

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 17/183 (9%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDG 134
            ++A   I +     +  ++  D D DG +S A++   L+   + A+   +Y P +  + 
Sbjct: 55  IERAREIIRRCADARKPTVVLPDKDADGLSSGAILFHTLTMLGLPADSITIYFPPKGSNV 114

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           +  +    E         I  +D GS     +    +     ++IDHH       P  A 
Sbjct: 115 H--DDITKETIATMSPSYIFVLDQGSRKSPPII---DTPHQCLIIDHHFADEGGFPQGAD 169

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
                 D         +A + F + + ++  L+          L +L     L +     
Sbjct: 170 -YVTAHDCPPV---ATSALLTFNICLPLHPDLKDK-----ISWLAALGTHGDLGSTIKWE 220

Query: 255 PLI 257
           P  
Sbjct: 221 PPF 223


>gi|256810800|ref|YP_003128169.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794000|gb|ACV24669.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens
           AG86]
          Length = 469

 Score = 54.0 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 89/262 (33%), Gaps = 25/262 (9%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
               +  K A+ + +      KI+I    D DG  S A++ +     +++A+        
Sbjct: 2   ESWAELKKGAKVLEK--NKDNKILIATHIDTDGLTSRAILQKLTERLNLDADFMFL---- 55

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ------YATNQGIDVIVIDHHQVKS 186
                    +     +   L+I  D GS     ++        +++   +I++DHHQ + 
Sbjct: 56  --KQITIETINDIPFKDYDLVIFADLGSGQLKMIKEKLDELNLSDKKDKIIILDHHQPEE 113

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
            ++P  A+++ N L        +C AGV +L    I              DL     L A
Sbjct: 114 IKVPE-AVIHINPLTIGKSGAEICGAGVSYLFAKAINNE---------WVDLAKYAVLGA 163

Query: 247 LATVCDVV-PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305
           +  + ++   L GLNR  +   +M    +    L+    +           +        
Sbjct: 164 IGDIQNIEGKLTGLNREILNDAIMNGNIKIKSDLQMYGRQTRPLFVSMRYWVDVRTDLLN 223

Query: 306 NAGGRIGESNLGSRLLISDDSQ 327
           N    I      ++    D + 
Sbjct: 224 NDSRIIKYIQYINKKYGIDVNP 245


>gi|329766547|ref|ZP_08258090.1| phosphoesterase DHHA1 [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329136802|gb|EGG41095.1| phosphoesterase DHHA1 [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 473

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
            +I   I + + I +    D DG  S +++ + L              I      +  ++
Sbjct: 14  DKISDCIKSRKSISVTTHIDCDGLTSGSIITKALIRAGAKCT------IRTSKEFSKKVI 67

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           E    +  +  +  D        L    + G + IV+DHHQ+  +E     ++N  +   
Sbjct: 68  ESLKKDSREFHVITDLAGGFSKNLD--ESLGENWIVLDHHQISEDEKENQNVINAWKYGI 125

Query: 203 LSGQGHLCAAGVVFLVLVLI 222
             G   +CA G+ +L  + +
Sbjct: 126 DGG-TEICAGGMAYLAAMAL 144


>gi|315425813|dbj|BAJ47467.1| archaea-specific RecJ-like exonuclease [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427695|dbj|BAJ49291.1| archaea-specific RecJ-like exonuclease [Candidatus Caldiarchaeum
           subterraneum]
          Length = 488

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
              + AA RI   +   E I IF   D D  +S  ++   L        +   +RI D  
Sbjct: 13  KQAENAAERIRNWVAQGEFIDIFTHNDADALSSAGIIAAALRREDARFRVRSLNRIDDF- 71

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
                 +       A+ II  D GS     L         V + DHH+     +P   + 
Sbjct: 72  ----IELFNSGYVEAKCIIFTDMGSGYTSELLPLLG-NRSVAIFDHHEPVQASLPPEWVH 126

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
                    G   + A+GV + V   +     + + + +   L  L D
Sbjct: 127 VNPHQYGFDGAREISASGVSYFVAKAMNPANIEYSPIAVVGALGDLQD 174


>gi|308063816|gb|ADO05703.1| hypothetical protein HPSAT_04885 [Helicobacter pylori Sat464]
          Length = 417

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 148/434 (34%), Gaps = 60/434 (13%)

Query: 69  MPDPLILTDCDKAARRI----VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123
           MP   +L    K  +RI    ++ +     I+ + D D DG  + +++M       + + 
Sbjct: 1   MPKKELLK-MSK--KRIFKDFLKEVKQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDF 57

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID 175
             + P R   GYG     +   +++          ++ +DC    +  D L ++ + G D
Sbjct: 58  FFFSPLRNAHGYGFTDLAINDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGAD 117

Query: 176 -----------------VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218
                             I+ DHH+     +     +    L+D     +   A    LV
Sbjct: 118 LAADTQLQEILLERFERCIITDHHKSFEVGLIDGNKIAYINLNDEKDANYYSGAFTSALV 177

Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278
              I++             L +  +L+A+  + D + L   +   +V  L  A+ +    
Sbjct: 178 FSQIFQ--------TQTTPLEN--ELIAITLLSDRIDLDHGDNLGMVLDLAQAKHERIQC 227

Query: 279 LKALIERV--NISSPITAENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQEL 329
                +           +   G+     INA  R+       G  +     L+      +
Sbjct: 228 FFKDKDLSLAQDDLDGISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPI 287

Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAA 388
               + +  + + +R  +       E++   Q     +  V +++       GI GL+A 
Sbjct: 288 NDPRLSVFNVKEFKRYNDIKKKMVKESEENAQIFSCNKILVALLDESCSVKLGISGLVAN 347

Query: 389 RLKEKFGRP-SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447
              +K+    S  I  +      GS R    F         ++   L++  GH  A GL+
Sbjct: 348 NFLKKYSSNRSLCIYKDNKDGYGGSARGDRNF------LSQIKTIPLIQARGHKEAFGLS 401

Query: 448 VERVNFGRLCDFFQ 461
             + +F ++ +  Q
Sbjct: 402 FAKKDFKKVVESLQ 415


>gi|254779588|ref|YP_003057694.1| hypothetical protein HELPY_1002 [Helicobacter pylori B38]
 gi|254001500|emb|CAX29516.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 442

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 125/439 (28%), Gaps = 64/439 (14%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPN--- 138
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 139 -------------------PSLMEKFINEGAQLIITVDCG---STSYDALQYATNQGIDV 176
                                   K   +   L+ + D G    ++ +  +         
Sbjct: 76  INDLLSQPCIFNPKTNQLVRLNCIKNQFQKDPLLFSADLGADLVSNIELQKILLEHFEQC 135

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236
           I+ DHH+    ++     +    L+D     +   A    LV   I++            
Sbjct: 136 IITDHHKSFEVDLIDGNKIAYINLNDEKDANYYSGAFTSALVFSQIFQ--------TQTT 187

Query: 237 DLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITA 294
            L    +L+++  + D + L  G N   V+        +                    +
Sbjct: 188 PLEE--ELISITLLSDRIDLDNGDNLDMVLNLAQAKHDRIECFFKDKDFSLAQDDLDGIS 245

Query: 295 ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML-------------AMKLDVLNQ 341
              G+     INA  R+  +        S     +                  +    N 
Sbjct: 246 NLYGFNCINYINALSRLSGAREFKGCYNSYLHYLVLKHFNPISDPRLSIFNVKEFTRYND 305

Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF-GRPSFA 400
            ++ M     E A+     +           +       G+ GL+A    +K+    S  
Sbjct: 306 IKKKMVKESEENAQIFPCNKILVALLDESCSI-----KVGVSGLVANNFLKKYPFNHSLC 360

Query: 401 ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460
           I  +      GS R    F         ++   L++ GGH  A GL+  + +F ++    
Sbjct: 361 IYRDNKDGYSGSARGGGNF------LSQIKTIPLIQSGGHEEAFGLSFAKEDFKKVIKSL 414

Query: 461 QKFAHNIVPALITTPVFKI 479
           Q    N   A         
Sbjct: 415 QAIRSNNAKAEFKKEDLTC 433


>gi|307260943|ref|ZP_07542626.1| hypothetical protein appser12_5110 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869355|gb|EFN01149.1| hypothetical protein appser12_5110 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 46

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            AI F        +  +    K   +   L +N ++G+K  QLR+ + 
Sbjct: 1   DAIWFNADLRIFPDLSI----KSARLIYKLDINEFKGNKNLQLRIENI 44


>gi|298674036|ref|YP_003725786.1| phosphoesterase RecJ domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287024|gb|ADI72990.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 711

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF-LSHC----SVNANMYIPDR 130
               K A+ I +A+  S+ I+I    D DG  S   + R  L         +A  Y+  R
Sbjct: 322 PGMKKVAKEIRKAVIKSKPIVIRHHADADGMTSAVALERAVLPLISEVSGSDAEYYLYRR 381

Query: 131 ---IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDA--LQYATNQGIDVI 177
                  Y       +        +   +   LI+ VD GST  D   ++ A   GID+I
Sbjct: 382 SPSKAPFYELADVTKDLSFALEDMERHGQKFPLILLVDNGSTDEDTPAMRQARVYGIDMI 441

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           V+DHH    E +  Y   + N        G        
Sbjct: 442 VVDHHN-PDEVVDQYLQSHINPAHAGGDFGITTGMLCT 478


>gi|308062307|gb|ADO04195.1| hypothetical protein HPCU_05220 [Helicobacter pylori Cuz20]
          Length = 417

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 139/416 (33%), Gaps = 54/416 (12%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176
           +   +++          +I +DC    +  D L ++ + G D                  
Sbjct: 76  INDLLSQPCIFNPKTNQLIRLDCIKNQFQKDPLLFSADLGADLAADTQLQEILLERFEQC 135

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236
           I+ DHH+     +     +    L+D     +   A    LV   I++            
Sbjct: 136 IITDHHKSFEVGLIDGNKIAYINLNDEKDANYYSGAFTSALVFSQIFQ--------TQTT 187

Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITA 294
            L +  +L+A+  + D + L   +   +V  L  A+ +         +           +
Sbjct: 188 PLEN--ELIAITLLSDRIDLDHGDNLDMVLDLAQAKHERIQCFFKDKDLSLAQDDLDGIS 245

Query: 295 ENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347
              G+     INA  R+       G  +     L+      +    + +  + + +R   
Sbjct: 246 NLYGFNCINYINALSRLSGAREFKGCYDSYLYYLVLKHFNPINDPRLSVFNVKEFKRYNG 305

Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKFGRP-SFAISFEE 405
                  E++   Q     +  V +++       GI GL+A    +K+    S  I  + 
Sbjct: 306 IKKKMVKESEENAQIFSCNKILVALLDESCSVKLGISGLVANNFLKKYSSNRSLCIYKDN 365

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                GS R    F         ++   L++  GH  A GL+  + +F ++ +  Q
Sbjct: 366 KDGYGGSARGDRNF------LSQIKTIPLIQARGHEEAFGLSFAKEDFKKVVESLQ 415


>gi|325959845|ref|YP_004291311.1| phosphoesterase DHHA1 [Methanobacterium sp. AL-21]
 gi|325331277|gb|ADZ10339.1| phosphoesterase DHHA1 [Methanobacterium sp. AL-21]
          Length = 465

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 26/241 (10%)

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANM 125
           L  +P+ L+  +KA   I ++    E I I+   D DG  + A++   L     +     
Sbjct: 2   LKSNPMNLS-FEKAHDLIKKS----EDIKIYTHIDCDGVTAGAVLSSMLDKLGKDHEVEF 56

Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV- 184
              D++ D            +    +L I  D GS     +          +++DHH   
Sbjct: 57  ISLDQMDD------------LVTENELTIFSDLGSGQ--EMDKLCTSNSKTLILDHHPPI 102

Query: 185 ---KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241
               +        +NP+  +               L     Y  L     +    D+ + 
Sbjct: 103 RKLDNYLNGQLIELNPHHHNIDGSYEVSGGGMTYLLARTFGYTDLSWMGVLSAVGDMQNS 162

Query: 242 LDLVALATVCDV-VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
                +     +    I  N       L +  RQ  P   AL    +++ PIT       
Sbjct: 163 FSGKLIGLNSSILQESIQQNLISSQNDLAIYGRQTRPLYIALSYFGDVNLPITNNKTECQ 222

Query: 301 I 301
           +
Sbjct: 223 M 223


>gi|73669259|ref|YP_305274.1| single-stranded-DNA-specific exonuclease RecJ [Methanosarcina
           barkeri str. Fusaro]
 gi|72396421|gb|AAZ70694.1| single-stranded-DNA-specific exonuclease RecJ [Methanosarcina
           barkeri str. Fusaro]
          Length = 466

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 25/199 (12%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
             +   +K A +  + I   + + +    D DG  S  ++   L     N       R V
Sbjct: 3   ETMKILNKEAEKCAEEIKKYKSVHVVSHIDADGLTSAGIICTALER--GNFEYT--TRFV 58

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
                +   ++   +E   ++I  D GS   + ++     GI  ++ DHHQ +       
Sbjct: 59  KQ--LDEKALDTIADENHNIVIFTDLGSGMCEQIESH---GIHAVISDHHQPQGSYQ--- 110

Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC- 251
             +NP+          L  +G  +L+   + +          N DL SL  + A+  +  
Sbjct: 111 FHLNPHLFGANGSY-ELSGSGSTYLLASALGK----------NQDLSSLAIVGAVGDMQH 159

Query: 252 -DVVPLIGLNRAYVVKGLM 269
             +  L+G+NR  + +G+ 
Sbjct: 160 LKMGQLVGINREILEEGVK 178


>gi|91773470|ref|YP_566162.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91712485|gb|ABE52412.1| Single stranded DNA specific Exonuclease recJ [Methanococcoides
           burtonii DSM 6242]
          Length = 461

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I     + +    D DG  S  ++ + L    +  +++           +   +E   N 
Sbjct: 19  IKAQVSVYVVSHIDADGLTSAGIICKALEREGIEHSIHF------VKQLDEVEIESIANL 72

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
             +L+I  D GS   D+L    + GI+ ++ DHHQ + E                     
Sbjct: 73  NPELVIFTDLGSGMIDSL---NSHGINAVIADHHQPRGELDYHLNPHLYGFNGSY----E 125

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-----GLNRAY 263
           L  +G+ +++   +                  L DL  +  V D+  L      GLNR  
Sbjct: 126 LSGSGMTYILANALGDN-------------KDLADLAIVGAVGDLQHLKKGHLTGLNRYI 172

Query: 264 VVKG 267
           + +G
Sbjct: 173 LEEG 176


>gi|308183136|ref|YP_003927263.1| hypothetical protein HPPC_04985 [Helicobacter pylori PeCan4]
 gi|308065321|gb|ADO07213.1| hypothetical protein HPPC_04985 [Helicobacter pylori PeCan4]
          Length = 417

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 136/416 (32%), Gaps = 54/416 (12%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176
           +   +++          ++ +DC    +  D L ++ + G D                  
Sbjct: 76  INDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGADLAANTQLQEILLERFEQC 135

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236
           I+ DHH+     +     +    L+D     +   A    LV   I++            
Sbjct: 136 IITDHHKSFEVGLIDGNKIAYINLNDEKDANYYSGAFTSALVFSQIFQ--------TQTT 187

Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITA 294
            L +  +L+A+  + D + L   +   +V  L  A+ +         +           +
Sbjct: 188 PLEN--ELIAITLLSDRIDLDHGDNLDMVLDLAQAKHERITCFFKDKDLSLAQDDLDGIS 245

Query: 295 ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL-------DVLNQNRRLME 347
              G+     INA  R+  +        S     +                + + +R  +
Sbjct: 246 NLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPTSDPRLSVFNVKEFKRYND 305

Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFEE 405
                  E++   Q     +  V +++       G+ GL+A    +K+    S  I  + 
Sbjct: 306 IKKKMVKESEENAQIFSCNKILVALLDESCSIKVGVSGLVANNFLKKYPSNRSLCIYRDN 365

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                GS R    F         ++   L++ GGH  A GL+  + +F ++    Q
Sbjct: 366 KDGYSGSARGDRDF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQ 415


>gi|257387120|ref|YP_003176893.1| phosphoesterase RecJ domain protein [Halomicrobium mukohataei DSM
           12286]
 gi|257169427|gb|ACV47186.1| phosphoesterase RecJ domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 492

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 20/195 (10%)

Query: 75  LTDCDKA-ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           L D   A A+R+ +A    +++++    D DG  S A+    L          IP  +V 
Sbjct: 7   LDDVATACAQRLCRA----DRVLLASHIDADGLTSAAVASLALERAG------IPFEVVF 56

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVK--SEEIP 190
               + + +          ++  D GS   D +      G  + ++ DHHQ      + P
Sbjct: 57  KKQLDETEIASIAAREYDTVLFTDFGSGQLDVISEHERAGDFEPVIADHHQPAVVDGQRP 116

Query: 191 AYALVNPNRLDDLSGQG------HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244
           + +  + +  +               +         ++ R L +  +         L  L
Sbjct: 117 SASGTDSHPAETEFHLNPLLVGLDGASELSGAGASYVLARALAEVGETEPPDGNRDLAGL 176

Query: 245 VALATVCDVVPLIGL 259
             +  V D+  + G 
Sbjct: 177 AVVGAVGDMQAVDGE 191


>gi|13541834|ref|NP_111522.1| single-stranded DNA-specific exonuclease [Thermoplasma volcanium
           GSS1]
 gi|14325270|dbj|BAB60174.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 493

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 58  KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117
           + FL    R L        +   AAR I   + + EK++I    D DG +S A+    L 
Sbjct: 5   EYFLEKKHRDLY-------EMAVAAREI---LRDQEKVVIVSHNDADGLSSSAIAKVTLD 54

Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177
              ++  +     +           +   +  +     VD GS S        + GI+ +
Sbjct: 55  RAGISNEVIFVKNLD---------RDVLKSLPSGFKWFVDLGSGSM---HMIRDSGIECL 102

Query: 178 VIDHHQVKSEEIPAY 192
           + DHH     ++   
Sbjct: 103 ITDHHVPDQFDVDED 117


>gi|55379663|ref|YP_137513.1| RecJ-like exonuclease [Haloarcula marismortui ATCC 43049]
 gi|55232388|gb|AAV47807.1| RecJ-like exonuclease [Haloarcula marismortui ATCC 43049]
          Length = 506

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 20/184 (10%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
           +AA R++ A             D DG  S A+    LS   +                + 
Sbjct: 22  RAADRVLLA----------SHIDADGLTSAAIATAALSRAGIPVETVF------KKQLDA 65

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHH--QVKSEEIPAYALVN 196
           + +E         ++  D GS   D +      G  + I+ DHH      +  P   +  
Sbjct: 66  AEIESIAAHEYDTVLFTDFGSGQLDVISEHVAAGDFEAIIADHHQPSDPDDCHPDAVVAT 125

Query: 197 PNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255
               D +      L        +       +          D   L  L  +  V D+  
Sbjct: 126 DGYADFETHLNPLLEGINGASELSGAGAAYVLARALSTGETDNRDLAALAVVGAVGDMQA 185

Query: 256 LIGL 259
           + G 
Sbjct: 186 VGGE 189


>gi|317180174|dbj|BAJ57960.1| hypothetical protein HPF32_0378 [Helicobacter pylori F32]
          Length = 417

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 135/416 (32%), Gaps = 54/416 (12%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176
           +   +++          ++ +DC    +  D L ++ + G D                  
Sbjct: 76  INDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGADLAADTQLQEILLERFEQC 135

Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236
           I+ DHH+     +     +    L+D     +   A    LV   I++            
Sbjct: 136 IITDHHKSFEVGLIDENKIAYINLNDEKDANYYSGAFTSALVFGQIFQ--------TQTT 187

Query: 237 DLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITA 294
            L +  +L+A+  + D + L  G N   V+        +         +          +
Sbjct: 188 PLEN--ELIAITLLSDCIDLDHGDNLDMVLNLAQAKHERIQCFFQDKDLSLAQDDLDGIS 245

Query: 295 ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL-------DVLNQNRRLME 347
              G+     INA  R+  +        S     +      +         + + +R  +
Sbjct: 246 NLYGFNCINYINALSRLSGAREFKDCYDSYLHYLVLKHFNPINDPHLSVFNVKEFKRYND 305

Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKFGRP-SFAISFEE 405
                  E++   Q     +  V +++       GI GL+A    +K+    S  I  + 
Sbjct: 306 IKKKMVKESEENAQIFSCNKILVALLDESCSVKLGISGLVANNFLKKYSSNRSLCIYRDN 365

Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                GS R    F         ++   L++  GH  A GL+  + +F ++ +  Q
Sbjct: 366 KDGYSGSARGDRNF------LSQIKTIPLIQARGHEKAFGLSFAKEDFKKVVESLQ 415


>gi|48477317|ref|YP_023023.1| single-stranded-DNA-specific exonuclease RecJ [Picrophilus torridus
           DSM 9790]
 gi|48429965|gb|AAT42830.1| single-stranded-DNA-specific exonuclease RecJ [Picrophilus torridus
           DSM 9790]
          Length = 444

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 15/182 (8%)

Query: 87  QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM-YIPDRIVDGYGPNPSLMEKF 145
           + I  ++ + +   YD DG +S  ++   L    +  ++ Y+      G+       + +
Sbjct: 19  EKIRENDYVRVLAHYDGDGVSSAIILTNALKREGIKFHLSYVSSLDEKGF------RQLY 72

Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
             E     I VD GS     +        + +++DHH  +  + P    +N N  D    
Sbjct: 73  EEEKDVFTIMVDAGSDQAQFISDYN----NYVILDHHFHRDFKAPG---ININARDFGYN 125

Query: 206 -QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264
                C A + FL+ + +    +      ++  +    D+     +   +          
Sbjct: 126 GTTEACGATMAFLMALTMNEDNKDLLPFFVSGVMADKQDIGGFKGLNASIYNEYNKNKTF 185

Query: 265 VK 266
             
Sbjct: 186 HM 187


>gi|282164992|ref|YP_003357377.1| hypothetical protein MCP_2322 [Methanocella paludicola SANAE]
 gi|282157306|dbj|BAI62394.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 703

 Score = 51.3 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VALMMRFLSHCSV----NANMYIPDR 130
              +K A+ I +AI  S+ I++    D DG  + VA+    L         +A  +   R
Sbjct: 318 PQMEKVAKHIRRAILKSQPIIVRHHADADGICAGVAVEKACLPLIKAQGDSDAEYHFFSR 377

Query: 131 ---IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSY--DALQYATNQGIDVI 177
                  Y       +        +   +   LII +D GST    DA +YA   GID++
Sbjct: 378 SPSKAPFYELEDINKDLTMALEDHERFGQAMPLIILMDNGSTEEDLDAYKYAKVYGIDLL 437

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
           V+DHH    E +  Y + + N     S  G     
Sbjct: 438 VVDHH-HPDEIVDQYLIAHVNPYHAGSDFGITAGM 471


>gi|307354144|ref|YP_003895195.1| phosphoesterase RecJ domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157377|gb|ADN36757.1| phosphoesterase RecJ domain protein [Methanoplanus petrolearius DSM
           11571]
          Length = 405

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 35/198 (17%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            + +A  + + +  S+ + +FG +D DG A+ +++   L       ++ I        G 
Sbjct: 3   IETSAGLVAEKLEKSDYVRVFGHHDADGIAAASIICHALYRQGKKFHLSI------KSGI 56

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
            P  +        ++ +  D GS+  D          D +VIDHH            +NP
Sbjct: 57  KPEDIR-----SHEITVLCDLGSSMED-------LPEDTVVIDHHIP---CFNGEYHINP 101

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                      L A+ V ++V   +                  L  L  L  + D   + 
Sbjct: 102 RLFGIDGEL-DLAASAVAYMVADHMGDN-------------RDLCSLALLGMIGDHQEIA 147

Query: 258 GLNRAYVVKGLMVARRQG 275
           G N   V +G+       
Sbjct: 148 GKNAGIVNEGIANQFITP 165


>gi|148241467|ref|YP_001226624.1| exonuclease VII large subunit [Synechococcus sp. RCC307]
 gi|147849777|emb|CAK27271.1| Exonuclease VII large subunit [Synechococcus sp. RCC307]
          Length = 384

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + S +N A+  +LE       G   P F      ++   V+   HL  +    D  ++QA
Sbjct: 7   SVSELNEAIGVLLER------GF-APRFLVDGAVVK--PVLKKGHLWFSLSDGD-ASIQA 56

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +A+      L      + G  + V G L  N+W       ++ LD  P 
Sbjct: 57  VAWASTVARLS--FRPNDGDGVRVVGKL--NFWGARASLSVQALDIRPS 101


>gi|330894547|gb|EGH27208.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas
          syringae pv. mori str. 301020]
          Length = 95

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
           +P ++ R+   R V+ +     L+ S+  L+P    L   D A   +V A+  
Sbjct: 46 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALRE 95


>gi|260891373|ref|ZP_05902636.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Leptotrichia hofstadii F0254]
 gi|260858756|gb|EEX73256.1| putative single-stranded-DNA-specific exonuclease RecJ
           [Leptotrichia hofstadii F0254]
          Length = 473

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566
           P F   N   ++I+ +     H+    + +      A+ F         F   +      
Sbjct: 2   PTFRTNNVLFENIKFIGENKNHIMFDIKQKGFFNKNAVWFNSGEY----FKELNENLFYD 57

Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPVE 593
           +   L    ++     ++ V D    +
Sbjct: 58  IVYKLKTEMFQDRYYTKVYVEDVKVSQ 84


>gi|257052014|ref|YP_003129847.1| phosphoesterase RecJ domain protein [Halorhabdus utahensis DSM
           12940]
 gi|256690777|gb|ACV11114.1| phosphoesterase RecJ domain protein [Halorhabdus utahensis DSM
           12940]
          Length = 469

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 79  DKAAR---RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
           D+AA    R+  A    +++++    D DG  S  +    L    +       +++ D  
Sbjct: 9   DRAAECAQRLRSA----DEVLLASHIDADGLTSAGIATTALERAGIPTTTVFKNQLDD-- 62

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYAL 194
                 +        Q ++  D GS   DA+     QG  + IV+DHHQ    E   +  
Sbjct: 63  ----EEIASIAARDFQTVLFTDFGSGQLDAITKHEQQGDFEPIVVDHHQPADAETRYHLN 118

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
                +D  S      A+ +       + R L +D +         L  L  +  V D+ 
Sbjct: 119 PLLEGIDGASELSGAGASYL-------LARALEEDEQDN-----RDLAALAVVGAVGDMQ 166

Query: 255 PLIGL----NRAYVVKGL 268
            + G     NRA V  G+
Sbjct: 167 AVGGELVGANRAIVEDGM 184


>gi|124486165|ref|YP_001030781.1| hypothetical protein Mlab_1347 [Methanocorpusculum labreanum Z]
 gi|124363706|gb|ABN07514.1| phosphoesterase, DHHA1 [Methanocorpusculum labreanum Z]
          Length = 465

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 12/138 (8%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           D  +AA  I +A        +    D DG  S A++ + +S   +  N     ++     
Sbjct: 6   DVSRAAEMIREANAA----TLISHIDADGITSEAIISQAVSRLGIPVNPVFVRQLE---- 57

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYALV 195
               +  K+I     L I  D G    + L+ A      V+++DHH    +     Y  V
Sbjct: 58  ---PMTMKYIPNDDTLKIFTDLGGGQQNLLEEAGIPTDKVLILDHHISQPAPGGTEYFQV 114

Query: 196 NPNRLDDLSGQGHLCAAG 213
           N     +   +       
Sbjct: 115 NSQFYGEEYTKCSAAGIT 132


>gi|257076661|ref|ZP_05571022.1| single-stranded-DNA-specific exonuclease RecJ [Ferroplasma
           acidarmanus fer1]
          Length = 443

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 18/184 (9%)

Query: 83  RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM-YIPDRIVDGYGPN 138
             + QA   +   + + +   YD DG +S  ++++ L    +  ++ YI +   +G+   
Sbjct: 12  NILHQAGEKLKEEKYVRVLAHYDGDGVSSSIILLKALERLDIKYHLSYIKNLDNEGF--- 68

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
                 +  E   L I VD GS+   A+        + I++DHH     E    + +N N
Sbjct: 69  ---RSLYEEEADSLNIIVDAGSSQIPAIADH----SNFIILDHHFYNKTET---SCININ 118

Query: 199 RLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
             D  ++G    C A + ++  + +    R      ++  +    D+  L+ +   +   
Sbjct: 119 ARDFGINGTRDACGATMAYIFALALDENNRDLFPFFMSGVMADKQDIGGLSGLNKDLYSE 178

Query: 258 GLNR 261
             + 
Sbjct: 179 YNSY 182


>gi|210135190|ref|YP_002301629.1| hypothetical protein HPP12_0997 [Helicobacter pylori P12]
 gi|210133158|gb|ACJ08149.1| hypothetical protein HPP12_0997 [Helicobacter pylori P12]
          Length = 417

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 125/417 (29%), Gaps = 56/417 (13%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D D   + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDSMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 ----------------------MEKFINEGAQLIITVDCG---STSYDALQYATNQGIDV 176
                                   K   +   L+ + D G    ++ +  +         
Sbjct: 76  INDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLVSNIELQKILLEHFKQC 135

Query: 177 IVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           I+ DHH   + + I    +   N  D+     +  A                        
Sbjct: 136 IITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALAF---------NQIFQTQT 186

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNR--AYVVKGLMVARRQGNPGLKALIERVNISSPIT 293
             L    +L+A+  + D + L   +     +        R         +      S   
Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLNLAQPKHDRIKCFFKDKDLSLAQDDSDGI 244

Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
           +   G+     INA  R+       G  +     L+      +    + +  + + +R  
Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYN 304

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKFGRP-SFAISFE 404
           +       E++   Q     +  V +++       G+ GL+A    +K+    S  I  +
Sbjct: 305 DIKKKMVKESEENAQIFPCNKILVALLDESCSIKVGVSGLVANNFLKKYSFNRSLCIYRD 364

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461
                 GS R    F         ++   L++ GGH  A GL+  + +F ++    Q
Sbjct: 365 NKDGYSGSARGDRNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVMKSLQ 415


>gi|20095028|ref|NP_614875.1| single-stranded-DNA-specific exonuclease [Methanopyrus kandleri
           AV19]
 gi|19888295|gb|AAM02805.1| Single-stranded-DNA-specific exonuclease [Methanopyrus kandleri
           AV19]
          Length = 442

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 119/362 (32%), Gaps = 37/362 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            ++A   +         + ++   D DG  + ALM   L          +P R+      
Sbjct: 18  LEEAVEFLED--LEGTAVRLYVHNDADGLTAGALMAFTLRCL------EVPTRLR----V 65

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
             +  E    +     + VD GS   D L+        V+VIDHH++ S+      LVNP
Sbjct: 66  LNTETELLKEDLDGPTVVVDMGSGILDKLR----NDHPVLVIDHHEISSKPSDNVLLVNP 121

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                + G     A+ V +L+   + ++  ++  +P    + +  D  A         + 
Sbjct: 122 REHG-VDGGTEASASTVAYLLCRRVVKV--EETCLPKAALVGAYGDNQA-----GKRGVR 173

Query: 258 GLNRAYVVKGLMVARRQGN-PGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316
           GLNR     G      +   P              I     G  +  ++ A  R G+ ++
Sbjct: 174 GLNRVPEEDGEKHEIIEIRDPAYWVFGRASMTVGEIVERVSGASVREALEA--RFGDLDV 231

Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376
               L  +          + +++ ++R L+     ++ E+K        ++  +  +   
Sbjct: 232 APVDLSRE---------DEAEIVREHRELLSGEKRKELESKTGRIHVFDEERPLKALRDP 282

Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436
                ++     R  E +     A+   +  +     RS     I + +S       +  
Sbjct: 283 LETATLL-NACGRYGEGWAGVLIAMGSWDPLQLAKKLRSKHKAIIREALSRLSRGEGITD 341

Query: 437 GG 438
             
Sbjct: 342 RE 343


>gi|298674182|ref|YP_003725932.1| phosphoesterase RecJ domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287170|gb|ADI73136.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 450

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 27/194 (13%)

Query: 83  RRIVQAIYNSEKIM------IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
             I  A   SE I+      +    D DG  S A++ + L    +  +  I  R+ +   
Sbjct: 10  ELISTAKQVSETILKYSNVRVVSHNDTDGITSAAIICQALLREKIRYHATIVSRLDESVI 69

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            + +           L+I  D GS   D +   +    D +VIDHH  + E      L  
Sbjct: 70  EDVNNT----ISEGDLVIFCDMGSGQPDLISNVSE---DTVVIDHHNPEGESTAKAVLNP 122

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
                D S       +        ++ R +   N          L  L     + D    
Sbjct: 123 HFSEIDGSTYLSASGST------YMVAREMDSSNV--------DLSGLAVTGAIGDKQVF 168

Query: 257 IGLNRAYVVKGLMV 270
              N   + + +  
Sbjct: 169 ESANEFILDESVKN 182


>gi|15612368|ref|NP_224021.1| hypothetical protein jhp1303 [Helicobacter pylori J99]
 gi|4155912|gb|AAD06881.1| putative [Helicobacter pylori J99]
          Length = 410

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 132/414 (31%), Gaps = 46/414 (11%)

Query: 69  MPDPLILTDCDKAARRI----VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123
           MP   +L    K  +RI    ++ +     I+ + D D DG  + +++M       + + 
Sbjct: 1   MPKKELLK-MSK--KRIFKDFLEEVKRHRPIIFYTDNDCDGMLAGSVLMSMCYRLGIKDF 57

Query: 124 NMYIPDRIVDGYGPNPSLME----------------------KFINEGAQLIITVDCG-- 159
             + P R   GYG     +                       K   +   L+ + D G  
Sbjct: 58  FFFSPLRNAHGYGFTDLALNDLLSQLCIFNPKTNQLVRLDYIKNQFQKTPLLFSADLGAD 117

Query: 160 -STSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
             ++ +  +    +    I+ DHH   + + I    +   N  D+     +  A     +
Sbjct: 118 LVSNIELQKILLERFEQCIITDHHKSFEVDWIDKNKIAYINLNDEKDANYYSGAFTSALV 177

Query: 218 VLVLIY-RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276
              +   +    + ++     L   +DL     +  V+ L       +       + +  
Sbjct: 178 FSQIFQIQTTPLEEELIAITLLSDRIDLDNGDNLDMVLNLAQPKHDRIEC---FFKDKDL 234

Query: 277 PGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
              +  ++ ++        N    +     A    G  N     L+      +    + +
Sbjct: 235 SLAQDDLDEISNLYGFNCINYINALSRLSGAREFKGCYNSYLHYLVLKHFNPISDPRLSV 294

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF- 394
             + + +R  +       E++   Q     +  V +++       G+ GL+A    +K+ 
Sbjct: 295 FNVKEFKRYNDIKKKMVKESEENAQIFSCNKILVAILDESCSIKVGVSGLVANNFLKKYP 354

Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448
              S  I  +      GS R    F         ++   L++ GGH  A GL+ 
Sbjct: 355 FNHSLCIYKDSKDGYSGSARGDGTF------LSQIKTIPLIQAGGHEEAFGLSF 402


>gi|147921763|ref|YP_684415.1| putative single-stranded DNA-specific exonuclease (RecJ-like)
           [uncultured methanogenic archaeon RC-I]
 gi|110619811|emb|CAJ35089.1| putative single-stranded DNA-specific exonuclease (RecJ-like)
           [uncultured methanogenic archaeon RC-I]
          Length = 430

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 29/180 (16%)

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           I +   +D DG  +  ++   L    V+    I          N     + I + A  +I
Sbjct: 22  IRVVSHHDADGITACGIICHALLRRKVHFQATIVS--------NLDPSIEAILDPAVPVI 73

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
             D GS   D +        D I++DHH    E        +   +D  S       +GV
Sbjct: 74  FCDMGSGQPDIV-----NKYDAIILDHHVPVGEHKNIQVNPHLIGIDGGSEL---SGSGV 125

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
            +     + RI+  +         + L  L     + D   + G N+  + + +      
Sbjct: 126 AY----ALARIMGDN---------VDLAGLAISGAIGDKQKMAGPNKDILDEAIKNGVIT 172


>gi|327399951|ref|YP_004340790.1| phosphoesterase RecJ domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327315459|gb|AEA46075.1| phosphoesterase RecJ domain protein [Archaeoglobus veneficus SNP6]
          Length = 510

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 26/225 (11%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            +  + A  +   +   E++++    D DG  S ++ ++ L    +         I+   
Sbjct: 54  KEMLRKAYEVALMLKKQEEVLVVTHVDADGITSGSIALQALERAGIE------GNILFVK 107

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
             +PS +E+  +       T D GS   D +     + I+ ++ DHH V           
Sbjct: 108 QLDPSTIEQVADRNVFTWFT-DLGSGQLDLIA---EKKIECVITDHH-VPQGHYRLQLNP 162

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV-- 253
           N   +D     G      +V                + LN+DL+SL  + A+  + D   
Sbjct: 163 NDFGVDGAHELGGAPTTYLV-------------AKSMGLNYDLVSLAIVGAVGDLQDSRH 209

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
             LIGLNR  + +G+          L+   ++      +      
Sbjct: 210 GKLIGLNRLVLQEGVEGNFISAFRDLRLFGKQTRPVYKMLEYTFD 254


>gi|313124932|ref|YP_004035196.1| single-stranded DNA-specific exonuclease [Halogeometricum
           borinquense DSM 11551]
 gi|312291297|gb|ADQ65757.1| single-stranded DNA-specific exonuclease [Halogeometricum
           borinquense DSM 11551]
          Length = 478

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 23/178 (12%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R+  A    +++++    D DG  S A+    L    +        ++          
Sbjct: 24  AARLRDA----DRVLLASHIDADGLTSAAIASSALERAGIPFETVFSKQLDK------EE 73

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200
           +        + ++  D GS   D +      G    ++ DHHQ    +   +       +
Sbjct: 74  VASIAATEYETVLFTDFGSGQLDIIADHEAAGDFTPVIADHHQPADADTEFHLNPLRFGI 133

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG 258
           D  S      A+ V       + R L  ++          L  L  +  V D+    G
Sbjct: 134 DGASELSGAGASYV-------LARALEDEDGAN-----RDLAALAVVGAVGDMQNSQG 179


>gi|330945905|ref|XP_003306649.1| hypothetical protein PTT_19838 [Pyrenophora teres f. teres 0-1]
 gi|311315750|gb|EFQ85244.1| hypothetical protein PTT_19838 [Pyrenophora teres f. teres 0-1]
          Length = 1032

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDG 134
            D+A + I +     +  +I  D D DG +S A++   L    ++    ++Y P     G
Sbjct: 634 IDRARQIIKECAEAKKPTVILPDKDADGLSSGAILQHTLISLGLSPDLISVYFP---PKG 690

Query: 135 YGPNPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
           +  +    ++ +   A   I V D GS     L  +       +VIDHH  +    P 
Sbjct: 691 FNVHDESTKEALTARAPFYIFVLDQGSRRSPPLIDSA---HTCLVIDHHFAEEGGFPK 745


>gi|317499046|ref|ZP_07957327.1| cellular tumor antigen p53 [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893696|gb|EFV15897.1| cellular tumor antigen p53 [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 76

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 519 QSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
           + + V       +++  +S     +  + F        +       K +  T +  +N +
Sbjct: 2   ERVNVFGKNKNVIKLALKSSQGTRIDGMIFEDEDEFREKM---GTAKYITCTYYPVINEY 58

Query: 577 RGSKRCQLRVL 587
           +G K  Q+ + 
Sbjct: 59  QGYKSLQINIQ 69


>gi|298675074|ref|YP_003726824.1| phosphoesterase RecJ domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288062|gb|ADI74028.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 324

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161
           D DG  S A++  +L       + Y+P   +  Y      ++K   +    II  D    
Sbjct: 6   DTDGICSAAILFEYL---GKEFDTYVPH--IGNYFFTVDEIDKISKKNYDFIIIADMAIP 60

Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203
             + +      G+ + + DHH   + +       NP  + + 
Sbjct: 61  EDNIVDLKNKSGVQIYIFDHHLQDNIQRNGIHHSNPVSIGEP 102


>gi|261402256|ref|YP_003246480.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369249|gb|ACX71998.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 436

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/459 (13%), Positives = 148/459 (32%), Gaps = 83/459 (18%)

Query: 73  LILTDCDKAARRIVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
             L + ++  + I + I N +  I +   +D DG +S  ++++ L   +   ++ +   +
Sbjct: 4   EKLKEMEEVVKAIKEKILNHNGYIRVITHHDTDGLSSGGILVKMLLRTNKLFHLTV---V 60

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEI 189
                     + K       L I  D GS   + +        + I++DHH    K   +
Sbjct: 61  EHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIM---KNNFNAIILDHHPPKIKESFL 117

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
                +NP+          + A+GV +LV                 F    L  L  +  
Sbjct: 118 GDIIQLNPHIFGIDGA-KEITASGVCYLV--------------AREFGYYDLSVLAIVGI 162

Query: 250 VCDVV--PLIGLNRAYVVKGLMVARRQ------GNPGLKALIERVNISSPITAENLGYMI 301
           + D+   PL+GLN+  V +       +       N     + + +   +     +L    
Sbjct: 163 IGDMQYSPLLGLNKFIVNEAREYRFVKIVNDIVYNIYDVEMYKAIAYCTKPYIPDLASES 222

Query: 302 ----------------------GPSINAGGRIGESNL----GSRLLISDDSQELEMLAMK 335
                                    + +        +     +R +I    ++  +++  
Sbjct: 223 KAFKFLKEIGIDPNKKYLDESERKKLLSSILFRYPKIDNLTVNRFIIEHKVKDAFLMSEM 282

Query: 336 LDVL---------------NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380
           L+ +               ++    +   +L + +  ++ +   ++  S+  +       
Sbjct: 283 LNAVGRNGLFAVGIGICLEDEECINIGKNILWKYKKNLINELKSVKLESLKNILYFEGKK 342

Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-----SIEGFDIGKMVSFAVEEGILV 435
           G++G++A+ L ++     +     E      S R        G ++   ++ A E G   
Sbjct: 343 GMIGIIASILADEKPVIGY---HIEGDIAKFSARGNRDLVNRGLNLSVAMAVAEEFGG-- 397

Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474
            GGGH +A+G  V +           +     + +    
Sbjct: 398 TGGGHNVASGAVVPKDKIMDFLKRVDEIIGEQLNSKKNQ 436


>gi|208434902|ref|YP_002266568.1| hypothetical protein HPG27_948 [Helicobacter pylori G27]
 gi|208432831|gb|ACI27702.1| hypothetical protein HPG27_948 [Helicobacter pylori G27]
          Length = 417

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 123/419 (29%), Gaps = 56/419 (13%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R V GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNVHGYGFTDLA 75

Query: 142 ME----------------------KFINEGAQLIITVDCGSTSYDALQYATNQ----GID 175
           +                       K   +   L+ + D G+      Q            
Sbjct: 76  INDLLSKPCIFNPKTNQLVRLDYIKNQFQKNPLLFSADLGADLAADTQLQEILLERFEQC 135

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           +I   H   +   I    +   N  D+     +  A     +   +              
Sbjct: 136 IITDHHKSFEVGLIDENKIAYINLNDEKDANYYSGAFTSALVFSQI---------FQTQT 186

Query: 236 FDLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPIT 293
             L    +L+A+  + D + L  G N   V+        +         +          
Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLNLAPAKHERIQCFFKDKDLSLAQDDLDGI 244

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK-------LDVLNQNRRLM 346
           +   G+     INA  R+  +        S     +             +  + + +R  
Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPLNDPRLSVFNVKEFKRYN 304

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFE 404
           +       E++   Q     +  V +++       G+ GL+A    +K+    S  I  +
Sbjct: 305 DIKKKMVKESEENAQIFSCNKILVALLDESCSIKVGVSGLVANNFLKKYPSNRSLCIYRD 364

Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463
                 GS R    F         ++   L++ GGH  A GL+  + +F ++    Q  
Sbjct: 365 NKDGYSGSARGGGNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQTL 417


>gi|167946786|ref|ZP_02533860.1| hypothetical protein Epers_09643 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 43

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%)

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590
           IAF           M     ++ +   L VN +RG  + QL V    
Sbjct: 1   IAFNQPE-------MGELASQVRLAYRLDVNEFRGRVQPQLVVEYIQ 40


>gi|150403481|ref|YP_001330775.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034511|gb|ABR66624.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C7]
          Length = 431

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 35/198 (17%)

Query: 85  IVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
           I + I N +  I +   +D DG  S A++++ L   + NA+M I + +      +   +E
Sbjct: 19  IKEKIENCDGLIRVVTHHDPDGLTSGAIVLKTLIRLNKNAHMTILEHL------SKESIE 72

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNPNRLD 201
           +   E  ++ I  D GS   D +      G + +++DHH  ++   EI     +NP+   
Sbjct: 73  ELAKENDKMFIFCDMGSGQIDLMD---KLGFNAVILDHHPPEIAETEIGNILQLNPHIFG 129

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV-----PL 256
                  + A+GV +L+                   L    DL  +A V  +      P 
Sbjct: 130 ANGA-KEISASGVCYLIAR-----------------LFEYYDLAPIAIVGAIGDMQHLPF 171

Query: 257 IGLNRAYVVKGLMVARRQ 274
           IGLN+  + +        
Sbjct: 172 IGLNKYILNEARKYRYLS 189


>gi|73669607|ref|YP_305622.1| hypothetical protein Mbar_A2111 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396769|gb|AAZ71042.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 452

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 78  CDKAARRIVQAIYNSEKIM------IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
             +  + I  A   +EKI       +    D DG  S  +M + L    +   + I  ++
Sbjct: 1   MSELEKLIDLAKNAAEKIRKYRFVRVVSHNDADGLTSAGIMAQALLRAGICFQLSIAGKL 60

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +    N +          +L+I  D GS   + +        DVIV+DHHQ    + PA
Sbjct: 61  DEAVIENVNKS----ISRNELVIFCDMGSGQPELIDKVA---ADVIVLDHHQ-PVGQSPA 112

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
            A+VN + +          +         L+ R L   N          L  L     + 
Sbjct: 113 KAVVNAHLVGIEGATDISASGT-----CYLVARELAAGNV--------DLAGLALAGAIG 159

Query: 252 DVVPLIGLNRAYVVKGLM 269
           D       N   + + L 
Sbjct: 160 DKQLFHTANAFILEEALK 177


>gi|294496570|ref|YP_003543063.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292667569|gb|ADE37418.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 710

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 29/190 (15%)

Query: 43  VARVLVNRNVSIDYAKDFLNPS--IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100
           + R+L  R  +  +  +FL  S  +  L P      +  + AR I +AI  S  I++   
Sbjct: 295 IDRILDQR--AEPHDIEFLVKSKLLEDLRP------EMKEVARIIKKAILRSRPILLRHH 346

Query: 101 YDVDGAAS-VALMMRFLSHC----SVNANMYIPDR---IVDGYGPNPSLME--------K 144
            D DG  + VA+    L         +   Y   R       Y       +        +
Sbjct: 347 ADADGMTAGVAIEKAILPLIREVNGQDGEYYFYKRSPSKAPFYEIMDVTKDISFALEDAE 406

Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQ--GIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
             ++   L++ VD GST  D          GID++V+DHH    + +  Y L + N    
Sbjct: 407 RHDQKLPLVVMVDNGSTEEDVPAMRQALIYGIDMVVVDHH-HPDKVVDDYLLAHVNPAHV 465

Query: 203 LSGQGHLCAA 212
               G     
Sbjct: 466 GGDFGQTAGM 475


>gi|33866713|ref|NP_898272.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. WH 8102]
 gi|81835051|sp|Q7U490|EX7L_SYNPX RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName:
           Full=Exodeoxyribonuclease VII large subunit;
           Short=Exonuclease VII large subunit
 gi|33633491|emb|CAE08696.1| possible exodeoxyribonuclease VII large subunit [Synechococcus sp.
           WH 8102]
          Length = 387

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + + +N A+ ++LE       G   P F      +   + +   HL +T    +  ++ A
Sbjct: 10  SVAELNTAIGNLLER------GF-APRFLVE-ATVSRPQ-LKKGHLWLTLTDGE-ASISA 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +A+      L        G  + V G L  N+W       ++VLD  P 
Sbjct: 60  VAWASQLRQLRYRPEDGDG--VTVVGKL--NFWAARASLNVQVLDIRPS 104


>gi|15646020|ref|NP_208201.1| hypothetical protein HP1410 [Helicobacter pylori 26695]
 gi|2314586|gb|AAD08455.1| predicted coding region HP1410 [Helicobacter pylori 26695]
          Length = 394

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 111/375 (29%), Gaps = 50/375 (13%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL------IITVDC--------------------GSTSYDALQYATNQGID 175
           +   +++          ++ +DC                     + +        +    
Sbjct: 76  LNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAANTELQEILLEHFEQC 135

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           +I   H   + + I    +   N  D+     +  A     +   +              
Sbjct: 136 IITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQI---------FQTQT 186

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPIT 293
             L    +L+A+  + D + L   +   +V  L  A+ +         +           
Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDDLDEI 244

Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346
           +   G+     INA  R+       G  +     L+      +    + +  + + +   
Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEFKXYN 304

Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKF-GRPSFAISFE 404
           +       E++   Q     +  V +++       G+ GL+A    +K+    S  I  +
Sbjct: 305 DXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRD 364

Query: 405 EDGKGIGSGRSIEGF 419
                 GS R    F
Sbjct: 365 NKDGYSGSARGGGNF 379


>gi|219685861|ref|ZP_03540668.1| single-stranded-DNA-specific exonuclease [Borrelia garinii Far04]
 gi|219672591|gb|EED29623.1| single-stranded-DNA-specific exonuclease [Borrelia garinii Far04]
          Length = 49

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91
          +L+ R +  D    FL  S   L+ +P +L D DK   RI +AI  
Sbjct: 1  MLIKREIKEDDFIFFLEDS-TNLLHNPFLLKDIDKFINRINKAIKE 45


>gi|159904736|ref|YP_001548398.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886229|gb|ABX01166.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C6]
          Length = 431

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 30/283 (10%)

Query: 85  IVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
           I + I N    I I   +D DG  S +++++ L   + NA M I + +      +   +E
Sbjct: 19  IKEKIENYDGLIRIVTHHDPDGLTSGSIVLKTLIRLNKNAQMTILEHL------SKESIE 72

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAYALVNPNRLD 201
           +   E  ++ I  D GS   +   +  N G + I++DHH  K    EI     +NP+   
Sbjct: 73  ELAKENDKMFIFCDMGSGQIE---FINNFGFNAIILDHHPPKVAETEIGDILQLNPHIFG 129

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261
                  + A+GV +L+                   L    DL  +A V  +  +  L  
Sbjct: 130 ANGA-KEISASGVCYLIAR-----------------LFGYYDLAPVAIVGAIGDMQHLPF 171

Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321
             + K ++   R+            N  +   ++++ Y   P I     I +       L
Sbjct: 172 IGLNKYILNEARKYRYLSVIKDIVYNCYNLPISKSIYYSTQPYIRELSSIDKIKEIFDEL 231

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
             +  ++        ++L   ++  ++  L     ++  + +D
Sbjct: 232 KINPEKKGITAKESENLLECFKKFNKNDELMVDRYEINHKIND 274


>gi|167948074|ref|ZP_02535148.1| single-stranded-DNA-specific exonuclease RecJ [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 98

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 113 MRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171
           +  L           +P+R   GYG +P ++E    +   LIITVD G  S   +  A  
Sbjct: 13  LLALQAFGCEKVGYLVPNRFEFGYGLSPEIVELAARQQPDLIITVDNGIASISGVSRAAE 72

Query: 172 QGIDVIVI 179
            GI V   
Sbjct: 73  LGIPVTGY 80


>gi|309799912|ref|ZP_07694116.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           infantis SK1302]
 gi|308116439|gb|EFO53911.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
           infantis SK1302]
          Length = 243

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
           +AF             S+ K++ +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 2   VAFGQGKW----ATEFSQTKQLELAVTLSVNQWNGQTTLQLMMVDAR-VEGVQLFNIR 54


>gi|304314376|ref|YP_003849523.1| single-stranded-DNA-specific exonuclease [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587835|gb|ADL58210.1| single-stranded-DNA-specific exonuclease [Methanothermobacter
           marburgensis str. Marburg]
          Length = 464

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 15/109 (13%)

Query: 77  DCDK---AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           + D+   A RR  + I  +E + ++   D DG  +  ++ + L        + I      
Sbjct: 2   NMDELEGALRRARKLIDEAETVTVYSHTDCDGITAATILSKLLDGLGKEHEINI------ 55

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
               N + + +    G  L +  D GS               V+++DHH
Sbjct: 56  ---ININEVPEV-EHGPDLTVFSDLGSGQMVHENMKR--NSRVLILDHH 98


>gi|325957863|ref|YP_004289329.1| phosphoesterase RecJ domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325329295|gb|ADZ08357.1| phosphoesterase RecJ domain protein [Methanobacterium sp. AL-21]
          Length = 453

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132
            +L   ++A   + + +     + I    D DG ++  +M   ++      ++ I  R+ 
Sbjct: 8   SLLNKAEEACELLGRHLDQDHVVRIISHNDADGISAAGVMCNAVAKQQGKFHVTIIPRLK 67

Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
           D        + KF+ E  +L I  D GS +   L+       DVI+ DHHQ    +    
Sbjct: 68  D------ENIAKFLKEKYKLFIFCDMGSGN---LRGIKRLKGDVIIADHHQTIDSKEELS 118

Query: 193 ALVNP--NRLDDLSGQGHLCAAGVVF 216
             +      L +L G   +  +GV +
Sbjct: 119 NSIVHVNPHLYELDGTKDVSGSGVSY 144


>gi|261402773|ref|YP_003246997.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369766|gb|ACX72515.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 469

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 116/348 (33%), Gaps = 39/348 (11%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136
           +  K    +   I  + K++I    D DG  S A++ +      ++A+            
Sbjct: 6   ELKKGVNALKSKI--NGKVLIATHIDTDGLTSRAILQKLSERLELDADFMFL------KQ 57

Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYA------TNQGIDVIVIDHHQVKSEEIP 190
                +E+       L I  D GS     ++         ++   VI++DHHQ +S ++P
Sbjct: 58  ITQRSIEEIPFNEYDLTIFADLGSGQLRMIKNKLEELKLADKDSKVIILDHHQPESIKLP 117

Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
               ++ N L      G +C AGV +L    + R            DL     L A+  V
Sbjct: 118 RSI-IHINPLTIGKSGGEICGAGVSYLFAREVNRE---------WTDLAKYAVLGAVGDV 167

Query: 251 CDVV-PLIGLNR-----------AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298
            ++   LIGLNR             +   L +  RQ  P   ++    ++ + +   +  
Sbjct: 168 QNIEGKLIGLNRLILEDARLRGDILIKSDLQMYGRQTRPLFVSMRYWADVRTDLLNNDS- 226

Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358
             I   +    +  +  +   L +++   E + +    ++L +    + +         +
Sbjct: 227 -RIIKYLQNISKKYDIEIDPSLRLAEIPFEHKRIIG-SELLIKCLNYVPNHWTSYIPKVI 284

Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
             +  + +         D           +R  +     +  +   + 
Sbjct: 285 FGEVYEFKGEDFGSPLRDLEEFSTCINACSRYGDYETALNVLMGDRDK 332


>gi|147919533|ref|YP_686727.1| phosphoesterase (RecJ-like) [uncultured methanogenic archaeon RC-I]
 gi|110622123|emb|CAJ37401.1| predicted phosphoesterase (RecJ-like) [uncultured methanogenic
           archaeon RC-I]
          Length = 702

 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VALMMRFL---SHCS-VNANMYIPDR 130
              +K A RI +AI  SE I+I    D DG  + VA+    L         +A  +   R
Sbjct: 317 PQMEKVALRIRKAILKSEPIIIRHHADADGICAGVAIERACLPLIRAQGDADAEHHFFSR 376

Query: 131 ---IVDGYGPNPSLME--------KFINEGAQLIITVDCGST--SYDALQYATNQGIDVI 177
                  Y       +        +   +   LI+ +D GST    DA +Y     ID++
Sbjct: 377 SPSKAPFYELEDVNKDLVMALEDNQRFGQRMPLIVLMDNGSTEEDIDAYRYTKVYDIDLL 436

Query: 178 VIDHHQVKSEEIPAYA-LVNPNRLDDLS 204
           V+DHH   +   P     VNP       
Sbjct: 437 VVDHHHPDTIVDPYLKGHVNPYHAGGDF 464


>gi|15678192|ref|NP_275307.1| single-stranded DNA exonuclease RecJ related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621206|gb|AAB84670.1| single-stranded DNA exonuclease RecJ related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 450

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 102/345 (29%), Gaps = 38/345 (11%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           + +SE + ++   D DG  +  ++ + L    ++  + I          N + + +    
Sbjct: 2   VESSETVTVYSHTDCDGITAATVLSKVLERLDMDHEVRI---------ININEVPEV-EL 51

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
            + L I  D GS         +     V+++DHH    +        +   ++ +     
Sbjct: 52  SSDLTIFSDLGSGQRVHENLKS--NSRVLILDHHPPVRKMNFTAPSGDFLEINPIFYGMD 109

Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268
                    +  L+ R     +        + LL  V       +  + GLNR  +   +
Sbjct: 110 GSTHVSGGGLTYLLAREFGYRD-----LSWMGLLAAVGDMQNITLGKMEGLNRDILQDSV 164

Query: 269 MVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328
              + +                       G    P +NA    G+  L +    ++    
Sbjct: 165 SEGQIEC---------------QSDLTIYGRHTRPLVNALSYFGDVTLPTTNNTNECIAR 209

Query: 329 LEMLAMKLDVLNQNRRLME------SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
           L+ L + L      R+L +        +  +    ++++  +     +  +     +   
Sbjct: 210 LKNLGIPLKNGESQRKLCDLTDDEKRKLFNEIYRMMVSEVPERYHRYLPRLILGEVYELS 269

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427
                   ++     +   +   + +   +   I G   GK    
Sbjct: 270 SEERYTVFRDLSEFSTAVNACNRNSRWKLAMEIIGGDRKGKRDEL 314


>gi|288931846|ref|YP_003435906.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894094|gb|ADC65631.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
          Length = 407

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 124/432 (28%), Gaps = 50/432 (11%)

Query: 77  DCDKAARRIVQAIYNSEK-IMIFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDG 134
           D  KA +   + + +  + + I    D DG  S  ++   L     +     I       
Sbjct: 8   DFLKAVKFTAEKLKDVTREVYIVHHNDADGICSALILTIALMRKGRDVKRYCI------- 60

Query: 135 YGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
              +P ++E+    +   +II  D G  + D +         + +IDHH     E     
Sbjct: 61  EKVHPKIIERIHEGKEDDVIIYTDLGGLALDTIAKIDGGRNYIFLIDHHPAVKVESEKVV 120

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
            ++   L  +SG   + A+ + ++V   I    +    + +   +    D        D 
Sbjct: 121 ELDSELLG-ISGDLFISASSLTYMVARGIDEKNKDLAYLAVIGSVGDYHDRYGGVLGIDR 179

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
           + L    R      + + + +    +  L           A ++          G     
Sbjct: 180 LSLEEAIR-LGQAKIKIEKMRERYYIVPLKN--------YASDVAKAFTNLGVVGYLEKG 230

Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373
            N+     +S +  +    + + + L       E    E  E     +    +       
Sbjct: 231 YNIAIECTLSGNVDDAIEKSQEYEKLK------ERKFKEMIERLKNGELKKERYVQWFHA 284

Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433
           + D +  G+  +       +F + +  +SF +D K +               +       
Sbjct: 285 KDDFYPMGVKAI------GEFCQVTKDMSFFDDDKYVI-----------GFQNVYDYIPD 327

Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI--- 490
           L +   +A+            ++ +        ++P          D     +A  +   
Sbjct: 328 LGEIKLNAVKVSGRTPIPLERKILNGVMPGFDCLIPEASKAVNGFPDATHKVAAATLIEK 387

Query: 491 ----ALIDMLES 498
                 I   E 
Sbjct: 388 GKEEEFIRAFER 399


>gi|87125239|ref|ZP_01081085.1| Exonuclease VII, large subunit [Synechococcus sp. RS9917]
 gi|86167008|gb|EAQ68269.1| Exonuclease VII, large subunit [Synechococcus sp. RS9917]
          Length = 385

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
               +N ++  +LE       G   P F   +  +   + V   HL MT    D  ++ A
Sbjct: 10  TVQELNSSIGSLLER------GF-APRFLV-DATVSRPQ-VKKGHLWMTLTDGD-ASISA 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +A+      L        G  + V G L  N+W       ++VLD  P 
Sbjct: 60  VAWASKLRQLAYVPGDGEG--VRVVGKL--NFWATRASLAVQVLDIRPS 104


>gi|261350484|ref|ZP_05975901.1| single-stranded DNA exonuclease RecJ related protein
           [Methanobrevibacter smithii DSM 2374]
 gi|288861266|gb|EFC93564.1| single-stranded DNA exonuclease RecJ related protein
           [Methanobrevibacter smithii DSM 2374]
          Length = 473

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 99/310 (31%), Gaps = 44/310 (14%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I +S  I I+   D DG  S A++              I DR+   Y      +++  + 
Sbjct: 19  IESSNDIKIYTHTDCDGICSGAILS------------IILDRLNKDYEIEFVNLDEIEDL 66

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEIPAYALVNPNRLDDLS-- 204
                +T+     S   +      G  ++++DHH            A             
Sbjct: 67  DLDHKLTIFSDLGSGQGVDKNAKDGQKILILDHHPPLRDINYKNDKAYTYLEINPMFYGI 126

Query: 205 -GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
            G  ++C  G+ + +                 F    L  +  L+ + D+      N+  
Sbjct: 127 DGSYYVCGGGLCYFL--------------AKTFGFKDLSWIGVLSAIGDMQ----NNKTG 168

Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
             +GL     Q +   + L++       I     G    P   A     +  L +    +
Sbjct: 169 HFEGL-NEIIQKDAINEGLLKVTKNDLNI----YGRSTRPLYVALSYFSDVKLPT----T 219

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           ++ QE +++  +L V  ++ R   S + E+ + ++      +    V           IV
Sbjct: 220 NNQQEAKVVLEELGVDEKHNRKTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIV 279

Query: 384 GLLAARLKEK 393
           G     L E+
Sbjct: 280 GDAYTFLNEE 289


>gi|326422540|gb|EGD71936.1| Phosphoesterase RecJ domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5_'5-way FS']
          Length = 352

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 12/139 (8%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
            K+   +   I  +    IF  +D DG  S ALM   L         Y           N
Sbjct: 7   KKSIENVRDYISKNNDFTIFYHFDTDGIVSAALMTEVLKKFKKGVYYY--------RATN 58

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
               EK   E     I V C     + +    ++  ++ +IDHHQ+    +   A  NP 
Sbjct: 59  YEDYEKMNIEEYSYNIIV-CDMQVRENVLPLFSK-RNLCIIDHHQI--INVDNIAYANPK 114

Query: 199 RLDDLSGQGHLCAAGVVFL 217
              D +          +F 
Sbjct: 115 LWGDNTYTPCSFLVYKIFE 133


>gi|189195300|ref|XP_001933988.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979867|gb|EDU46493.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 450

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 19/184 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDG 134
            D+A + I +     +  +I  D D DG +S A++   L    ++    ++Y P     G
Sbjct: 52  IDRARQIIGECAEAQKPTVILPDKDADGLSSGAILQHTLISLGLSPDLISVYFP---PKG 108

Query: 135 YGPNPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
           +  +    ++ +   A   I V D GS     L  +       +VIDHH  +    P   
Sbjct: 109 FNVHDKSTKEALTARAPSYIFVLDQGSRRSPPLIDSA---HTCLVIDHHFAEEGGFPEG- 164

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
                  D         +A + + + + ++  L           L +L     L T    
Sbjct: 165 SAYVTAHDCPPV---ATSALLTYNICLPLHPDLSDK-----ISWLAALGTHGDLGTTIKW 216

Query: 254 VPLI 257
            P  
Sbjct: 217 EPPF 220


>gi|222444943|ref|ZP_03607458.1| hypothetical protein METSMIALI_00559 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434508|gb|EEE41673.1| hypothetical protein METSMIALI_00559 [Methanobrevibacter smithii
           DSM 2375]
          Length = 473

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 95/310 (30%), Gaps = 44/310 (14%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I +S  I I+   D DG  S A++              I DR+   Y      +++  + 
Sbjct: 19  IESSNDIKIYTHTDCDGICSGAILS------------IILDRLNKDYEIEFVNLDEIEDL 66

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEIPAYALVNPNRLDDLS-- 204
                +T+     S   +      G  ++++DHH            A             
Sbjct: 67  DLDHKLTIFSDLGSGQGVDKNAKDGQKILILDHHPPLRDINYKNDKAYTYLEINPMFYGI 126

Query: 205 -GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
            G  ++C  G+ + +                 F    L  +  L+ + D+      +   
Sbjct: 127 DGSYYVCGGGLCYFL--------------AKTFGFKDLSWIGVLSAIGDMQNNKTGHFEG 172

Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
           + + +             L++       I     G    P   A     +  L +    +
Sbjct: 173 LNEIIQEDAINE-----GLLKVTKNDLNI----YGRSTRPLYVALSYFSDVKLPT----T 219

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           ++ QE +++  +L V  ++ R   S + E+ + ++      +    V           IV
Sbjct: 220 NNQQEAKVVLEELGVDEKHNRKTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIV 279

Query: 384 GLLAARLKEK 393
           G     L E+
Sbjct: 280 GDAYTFLNEE 289


>gi|150400438|ref|YP_001324205.1| phosphoesterase domain-containing protein [Methanococcus vannielii
           SB]
 gi|150013141|gb|ABR55593.1| phosphoesterase RecJ domain protein [Methanococcus vannielii SB]
          Length = 432

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 34/225 (15%)

Query: 85  IVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143
           I   I   E  I I   +D DG  +  ++++ L   +    M I +++        +L +
Sbjct: 19  IKDKIEKKEGLIRIITHHDTDGLTAGFIILKTLYRLNKTFQMTILEQLTK-----ENLEK 73

Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNRLD 201
             +     L I  D GS   D ++   N G D I++DHH   + E        +N + + 
Sbjct: 74  LSLENKDNLYIFCDMGSGQSDIIE---NLGFDAIILDHHPPTNFEAKFGKILQLNAHIIG 130

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV--PLIGL 259
              G   + A+G+ +LV                 F    L  +  +  + D+   P +GL
Sbjct: 131 SN-GSKEISASGICYLV--------------ARTFGYYDLAPIAIIGAIGDMQHKPFLGL 175

Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304
           N+  + +       + N  L  + + V     +      Y     
Sbjct: 176 NKYILNEA------RKNRYLSVIKDSVYNCYNLPISKAIYYSTQP 214


>gi|134046092|ref|YP_001097578.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132663717|gb|ABO35363.1| phosphoesterase, RecJ domain protein [Methanococcus maripaludis C5]
          Length = 431

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 25/270 (9%)

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           I I   +D DG  S +++++ L   + NA M I + +      +   +E    E  ++ I
Sbjct: 30  IRIVTHHDPDGLTSGSIVLKTLIRLNKNAQMTILEHL------SKESIEDLAKENDKMFI 83

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
             D GS   + +    N G + I++DHH  K  E     ++  N                
Sbjct: 84  FCDMGSGQIELI---NNLGFNAIILDHHPPKVAETEIGNILQLNPH-------------- 126

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
             +      + +       L   L    DL  +A V  +  +  L    + K ++   R+
Sbjct: 127 --IFGANGAKEISASGVCYLIARLFGYYDLAPIAIVGAIGDMQHLPFIGLNKYILNEARK 184

Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334
                       N  +   ++++ Y   P I     I +       L  +  ++      
Sbjct: 185 NRYLSVIKDIVYNCYNLPISKSICYSTQPYIRELSSIDKIKEIFDELKINPEKKGITAKE 244

Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364
             ++L    +  ++  L     ++  + +D
Sbjct: 245 AENLLEYFEKFNKNDELMVDRYEINHKIND 274


>gi|20092244|ref|NP_618319.1| hypothetical protein MA3432 [Methanosarcina acetivorans C2A]
 gi|19917479|gb|AAM06799.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 445

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 24/198 (12%)

Query: 75  LTDCDKAARRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
           +++ +K       A   I     + I    D DG  S  +M   L    +   + I  ++
Sbjct: 1   MSELEKLINLAKNAADKIRKHRFVRIVSHNDADGLTSAGIMALTLLRAGIGFQLSIAGKL 60

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
            +      +           ++I  D GS   +          DV+V+DHH     + PA
Sbjct: 61  DETVIEEVNRT----VSKGDMVIFCDMGSGQPELTAKVA---ADVVVLDHH-KPVGQSPA 112

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
             +VN + +          +         L+ R L   N          L  L     V 
Sbjct: 113 KVMVNAHLVGIDGATDISASGT-----CYLVARELGTGNI--------DLAGLAIAGAVG 159

Query: 252 DVVPLIGLNRAYVVKGLM 269
           D       N   + + L 
Sbjct: 160 DRQLFRTANAFILDEALK 177


>gi|224541036|ref|ZP_03681575.1| hypothetical protein CATMIT_00187 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526033|gb|EEF95138.1| hypothetical protein CATMIT_00187 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 483 LNASAVNIALIDM-LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSE 539
           L  S ++   I+  L+   P+G G    + +    K+ S   V      ++++F   +  
Sbjct: 311 LEISDLSKTNIEEYLQVLSPFGIGQEKTLVSIEGLKIHSA-PVKDYYDRIKLSFFIPNVG 369

Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
            +  I      TP  +     +G+ + + G L +N +
Sbjct: 370 GIDTI----IYTPGYKIDKFKQGQTVKIVGTLSINDF 402



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83
          +  ++    I   + +  I+A+ + +R  + +  +    P       +   L + +    
Sbjct: 14 EVELSHTKEIMDSYEVNPIIAKYVEHRGFTKEDYEALNTP----FYYNFTDLENGETVVN 69

Query: 84 RIVQAIYNSEKIMIF 98
           I +A  +  KI I 
Sbjct: 70 LIKEACASKSKIHIC 84


>gi|300709482|ref|YP_003735296.1| phosphoesterase DHHA1 [Halalkalicoccus jeotgali B3]
 gi|299123165|gb|ADJ13504.1| phosphoesterase DHHA1 [Halalkalicoccus jeotgali B3]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 24/179 (13%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R+ +A    E +++    D DG  S  +    L    ++               +   
Sbjct: 16  ANRLREA----EAVLLASHIDADGLTSAGIAASALERAGISFEA------TFAKQLDSEE 65

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200
           +E+      + ++  D GS   D +    N+G    ++ DHHQ        +       L
Sbjct: 66  LERIAASDFETVLFTDFGSGQLDLIAAHENRGAFTPVICDHHQPADAGTDFHC---NPLL 122

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           + L+G   L  AG  +L+   +     +D           L  L  +  V D+    G 
Sbjct: 123 EGLNGATELSGAGTAYLLARAL-----EDGTDN-----RDLAALAVVGAVGDMQSSEGE 171


>gi|16081637|ref|NP_394002.1| hypothetical protein Ta0527 [Thermoplasma acidophilum DSM 1728]
 gi|10639695|emb|CAC11667.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 491

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 75  LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134
           L    K A RI   I    KI+I    D DG +S A+    L    +   +         
Sbjct: 17  LFGIAKDASRI---IAEQRKIIIVSHIDADGLSSSAIAKTSLDRAGIENEVVF------- 66

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
                                VD GS S        +  I+ ++ DHH     +I 
Sbjct: 67  --IKNLDPMVLKGLPPGFKWFVDLGSGSM---NMIRDANIECLITDHHLPDQFDID 117


>gi|149005721|ref|ZP_01829460.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762661|gb|EDK69621.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus
           pneumoniae SP18-BS74]
          Length = 226

 Score = 47.1 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600
           +AF             S+ K + +   L VN W G    QL ++DA  VEG   F  +
Sbjct: 2   VAFGQGRW----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 54


>gi|307353101|ref|YP_003894152.1| phosphoesterase RecJ domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156334|gb|ADN35714.1| phosphoesterase RecJ domain protein [Methanoplanus petrolearius DSM
           11571]
          Length = 459

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 16/147 (10%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D    A  I  +    +K+ I    D DG  S A+M + ++   +        R V   
Sbjct: 5   KDISAVAGIIHDS----KKVTIISHIDADGITSEAIMRQAVARAGIEV------RSVFVR 54

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
              P  M K + +   L + +D G+   + L+       +V++IDHH  +  +       
Sbjct: 55  QLEPITM-KHVPDDDSLKLFIDLGAGQQNLLEERGLSDREVVIIDHHVTQDVDTQYI--- 110

Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222
                    G   L AAGV +LV   I
Sbjct: 111 --QANGLPYGHEKLSAAGVGYLVAREI 135


>gi|289581675|ref|YP_003480141.1| phosphoesterase RecJ domain protein [Natrialba magadii ATCC 43099]
 gi|289531228|gb|ADD05579.1| phosphoesterase RecJ domain protein [Natrialba magadii ATCC 43099]
          Length = 515

 Score = 46.7 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 17/188 (9%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
           D+A     Q +  +E++++    D DG  S A+  + L    +                +
Sbjct: 10  DRALEC-AQTLCEAERVLLASHIDADGLTSAAIASQALERAGIPFETVF------EKQLD 62

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNP 197
            + +E         ++  D GS   D +      G    ++ DHHQ           +NP
Sbjct: 63  AAAIEAIAATEYDTVLFTDFGSGQLDEISVHEAAGAFTPVIADHHQPAD--AETDYHLNP 120

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ------DNKVPLNFDLLSLLDLVALATVC 251
                      L  AG  +++   +  +  +       ++     D   L  L  +  V 
Sbjct: 121 LLFGINGA-SELSGAGASYVLARALAEVSDETIIPDGGSETAARADNRDLAALAIVGAVG 179

Query: 252 DVVPLIGL 259
           D+    G 
Sbjct: 180 DMQDSDGE 187


>gi|292654251|ref|YP_003534148.1| RecJ-like exonuclease [Haloferax volcanii DS2]
 gi|291371588|gb|ADE03815.1| RecJ-like exonuclease [Haloferax volcanii DS2]
          Length = 476

 Score = 46.7 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 20/192 (10%)

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           P P +       A R+  A    +++++    D DG  S  +    L    +        
Sbjct: 4   PVPELTEHAAACAARLRDA----DRVLLASHIDADGLTSAGIASTALERAGIPFETVFCR 59

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189
           ++ +      + +          ++  D GS   D +      G    VI  H   +E +
Sbjct: 60  QLDE------AAVADIAATDYDTVLFTDFGSGQLDIIADHEAAGDFHPVIADHHQPAEGV 113

Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249
                +NP R   L+G   L  AG  +++   +          P   D   L  L  +  
Sbjct: 114 ETDHHLNPLRFG-LNGASELSGAGASYVLARAL---------EPDAGDNRDLAALAVVGA 163

Query: 250 VCDVVPLIGLNR 261
           V D+    G  R
Sbjct: 164 VGDMQDTNGELR 175


>gi|255019532|ref|ZP_05291624.1| hypothetical protein ACA_1312 [Acidithiobacillus caldus ATCC 51756]
 gi|254971030|gb|EET28500.1| hypothetical protein ACA_1312 [Acidithiobacillus caldus ATCC 51756]
          Length = 49

 Score = 46.7 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587
           + AI FR       E      GKR  +   L VN WR  +  QLR+ 
Sbjct: 1   MDAIWFRRNSEQSLE-----EGKRYTMVYALSVNRWRSRENLQLRIE 42


>gi|323705398|ref|ZP_08116973.1| phosphoesterase RecJ domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535300|gb|EGB25076.1| phosphoesterase RecJ domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 317

 Score = 46.7 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDR 130
           +IL D        + +I  +EKI +      D DG  SV  + + ++    + +++I D 
Sbjct: 1   MILNDM-------LDSIREAEKIAVVTHVSPDGDGIGSVTALYKAMNKLKKDVSIFIDDD 53

Query: 131 IVDGYGPNPSLME--KFINEGAQLIITVDCG 159
           + + Y   P   +  +  +    L+ITVDC 
Sbjct: 54  VPEIYRFMPYTDKITRPFDISVDLLITVDCA 84


>gi|289597049|ref|YP_003483745.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
 gi|289534836|gb|ADD09183.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
          Length = 420

 Score = 46.7 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 83  RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
            R+ +A   I   +   I   YDVDG  +  ++  +L       ++     +      + 
Sbjct: 5   ERLKKARELIDKGDDFRILTHYDVDGICAGGIIAHYLLKNGKRFHISFFRNVDKEEISDI 64

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
              E +       +I  D GS+  D+         ++IV+DHH+   +      L     
Sbjct: 65  VNEEDY-------VIMSDMGSSLIDS------LEGNIIVLDHHKPPGDNDK--ILHINPH 109

Query: 200 LDDLSGQGHLCAAGVVFLVLV 220
           LD  +G    C + + +++  
Sbjct: 110 LDGYNGAHDACGSTLAYMLTR 130


>gi|269986480|gb|EEZ92765.1| phosphoesterase RecJ domain protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 352

 Score = 46.3 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 12/129 (9%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           +  +    +F  +D DG  S AL+   L   +     Y P    D         +  + E
Sbjct: 17  VSKNNDFTVFYHFDTDGIVSAALLTAALKKLNKGVYYYRPTNYED-------YEKMDMQE 69

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208
            ++ II  D          +   +  ++ +IDHHQ+        A  NP    D +    
Sbjct: 70  YSKNIIICDMQIRETQLELF---KDKNLCIIDHHQI--INADISAYANPKIWGDNTYTPC 124

Query: 209 LCAAGVVFL 217
                 +F 
Sbjct: 125 SLVVYNIFN 133


>gi|318040571|ref|ZP_07972527.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CB0101]
          Length = 385

 Score = 45.9 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + + +N A+  +LE       G   P F      +   + +   HL +T   +   ++  
Sbjct: 11  SVAELNQAIASLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLVDEQ-ASISG 60

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +    + L   +  S G  + V G L  N+W       +++LD  P 
Sbjct: 61  VVWASQLSKLS--VQPSEGDGVLVVGKL--NFWASRASLCVQILDLRPS 105


>gi|310828063|ref|YP_003960420.1| phosphoesterase RecJ domain protein [Eubacterium limosum KIST612]
 gi|308739797|gb|ADO37457.1| phosphoesterase RecJ domain protein [Eubacterium limosum KIST612]
          Length = 324

 Score = 45.9 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 15/153 (9%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMYI--PDRIVD 133
             K    I+  I  ++  +I      DG A   A+ + + L     N + YI  P     
Sbjct: 1   MKKVPTEILDCIKENQSFLILVHNKPDGDAIGSAIALGKGLKALGKNVDYYIETPLEDKL 60

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
            +       E  + +   ++  +DC +  Y             +VIDHH           
Sbjct: 61  QFFSESRYFEDELQDEYDVVAFLDCSTMEYAFKPVPMVDARTTVVIDHH----------- 109

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL 226
             N    D    +     A +VF +L  +   L
Sbjct: 110 ATNQGYGDINFLEITAATAELVFRILDALDVEL 142


>gi|317009640|gb|ADU80220.1| hypothetical protein HPIN_05065 [Helicobacter pylori India7]
          Length = 329

 Score = 45.9 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 69  MPDPLILTDCDKAARRIVQ----AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123
           MP   +L    K  +RI +     +     I+ + D D DG  + +++M       + + 
Sbjct: 1   MPKKELLK-MSK--KRIFKDFFKEVKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDF 57

Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQL 152
             + P R   GYG     +   +++    
Sbjct: 58  FFFSPLRNAHGYGFTHLAINDLLSQPCIF 86


>gi|148643560|ref|YP_001274073.1| ssDNA exonuclease, RecJ [Methanobrevibacter smithii ATCC 35061]
 gi|148552577|gb|ABQ87705.1| ssDNA exonuclease, RecJ [Methanobrevibacter smithii ATCC 35061]
          Length = 473

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 44/310 (14%)

Query: 89  IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148
           I +S  I I+   D DG  S A++              I DR+   Y      +++  + 
Sbjct: 19  IESSNDIKIYTHTDCDGICSGAILS------------IILDRLNKDYEIEFVNLDEIEDL 66

Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEIPAYALVNPNRLDDLS-- 204
                +T+     S   +         ++++DHH            A             
Sbjct: 67  DLDHKLTIFSDLGSGQGVDKNAKDDQKILILDHHPPLRDINYKNDKAYTYLEINPMFYGI 126

Query: 205 -GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263
            G  ++C  G+ + +                 F    L  +  L+ + D+      +   
Sbjct: 127 DGSYYVCGGGLCYFL--------------AKTFGFKDLSWIGVLSAIGDMQNNKTGHFEG 172

Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323
           + + +             L++       I     G    P   A     +  L      +
Sbjct: 173 LNEIIQEDAINE-----GLLKVTKNDLNI----YGRSTRPLYVALSYFSDVKLPI----T 219

Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383
           ++ QE +++  +L V  ++ R   S + E+ + ++      +    V           IV
Sbjct: 220 NNQQEAKVVLEELGVDEKHNRKTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIV 279

Query: 384 GLLAARLKEK 393
           G     L E+
Sbjct: 280 GDAYTFLNEE 289


>gi|289192804|ref|YP_003458745.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939254|gb|ADC70009.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 431

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 58/439 (13%), Positives = 130/439 (29%), Gaps = 50/439 (11%)

Query: 73  LILTDCDKAARRIVQAIYNS-EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
             L + +K  + I + I N    I +   +D DG +S  ++ + L   +   ++ +   +
Sbjct: 2   EKLKEIEKVTKAIKEKILNHYGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV---V 58

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
                     + K       L I  D GS   + +       I +        +S     
Sbjct: 59  EHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEDIIKHNFNAIILDHHPPVIKESFVNEN 118

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLV-------LIYRILRQDNKVPLNFDLLSLLDL 244
              +NP+    + G   + A+GV +LV          +  I+     +  N  L     +
Sbjct: 119 IIQLNPHIFG-VDGAREITASGVCYLVAREFGYYDLSVLAIVGIIGDMQYNPLLGLNKFI 177

Query: 245 VALATVCDVVPLIGLNRAYVVK--GLMVARRQGNPGLKALIERVNISSPI-------TAE 295
           V  A     V ++      +              P +  L         +         +
Sbjct: 178 VNEAREYRYVKIMNDIVYNIYNVEIYKAIAYCTKPYIPELASEGKAFKFLKDIGIDPNKK 237

Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL---------------- 339
            L       + +        + + ++     +     A  L  +                
Sbjct: 238 ELDDTDKKKLLSAIIFKYPKIENLMIDRYLIEHKVRDAFLLSEMLNAVGRNGLFAVGIGI 297

Query: 340 ---NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
              +     + + +L + +  ++ +   ++   +  +       G++G++A+ L +    
Sbjct: 298 CLEDDECIKIGNQILWEYKKNLINELKSVKLKKLNNIYYFEGKKGMIGIIASILVDDRPV 357

Query: 397 PSFAISFEEDGKGIGSGR-----SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
             +     E      S R        G ++   +S A E G    GGGH +A+G  V + 
Sbjct: 358 IGY---HIEGEIAKFSARGNRDLVNRGLNLSIAMSVAKEFGG--NGGGHDVASGAVVPKD 412

Query: 452 NFGRLCDFFQKFAHNIVPA 470
                     +     +  
Sbjct: 413 KIMEFLKRVDEIIGEQLKK 431


>gi|91773749|ref|YP_566441.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91712764|gb|ABE52691.1| Nucleic acid binding protein [Methanococcoides burtonii DSM 6242]
          Length = 707

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAA-SVALMMRFLSHC----SVNANMYIPDR-- 130
             K A+ I +AI  S+ I++    D DG   +VA+    L         +A  +   R  
Sbjct: 324 MRKVAKEIKRAIIRSKPILLRHHADADGMTAAVAIEKAILPMIREVNGPDAEYHYYKRAP 383

Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179
                Y       +            +   L++ VD GST  D  A++ A   GID++V+
Sbjct: 384 SKAPFYELPDVTKDISFALEDAARHGQKLPLVVMVDNGSTEEDVPAMRQAQVYGIDMVVV 443

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           DHH    E +  Y L + N        G        
Sbjct: 444 DHH-HPDEIVDQYLLGHVNPAHVGGDFGMTAGMLAT 478


>gi|254167146|ref|ZP_04873999.1| DHH family [Aciduliprofundum boonei T469]
 gi|197624002|gb|EDY36564.1| DHH family [Aciduliprofundum boonei T469]
          Length = 420

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/429 (10%), Positives = 118/429 (27%), Gaps = 56/429 (13%)

Query: 83  RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
            R+ +A   I   +   I   YDVDG  +  ++  +L       ++     +      + 
Sbjct: 5   ERLKKARELIDKGDDFRILTHYDVDGICAGGIIAHYLLKNGKRFHISFFRNVDKEEILDI 64

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYAL---- 194
              E ++         +D    +   L +    G  D I+  +  +        A     
Sbjct: 65  VNEENYVIMSDMGSSLIDSLEGNIIVLDHHKPAGDNDKILHINPHLDGYNGAHDACGSTL 124

Query: 195 ---------VNPNRLDDLSGQGHLCAAGVVFL--VLVLIYRILRQD-------------- 229
                    + P  L  + G              +   +   L+++              
Sbjct: 125 AYMLTREKEMIPFFLAGVFGDKQHIGGLTGLNKELFDELSLKLKKEFVLHGNVVNAILYS 184

Query: 230 ------NKVPLNFDLLSLLDLVALATVCDVVPLIGL--NRAYVVKGLMVARRQGNPGLKA 281
                        ++  +L  + ++   D+  L      +   +  L + +    P    
Sbjct: 185 TEPFFPGLSGRQDEIERMLKDLGISLTKDIEKLSDEEKTKLISMLSLNLIKNSRIPEAGR 244

Query: 282 LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341
            +        +        +   I++  R    ++    ++ D+S +        + +  
Sbjct: 245 FV----FDFDVNLGTSIRYLTELIDSSARTDNQSVALAYILGDESAK--------ERMEI 292

Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401
            RR  +  +++    K++    +++       +       +  + +  L           
Sbjct: 293 LRREYKGRVIDG-LYKMMENLFEMEHLQYFFADDSYLSSSLATVGSLYLLNPRKATLGIF 351

Query: 402 SFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460
             +       GS   +    +G ++  A        GGGH +AAG T+ +          
Sbjct: 352 VDDMVHISARGSKYLVPKVHLGDIMREA-ASKFGGNGGGHDIAAGATIPKGTEEEFLKEV 410

Query: 461 QKFAHNIVP 469
                  + 
Sbjct: 411 DILIGKSLS 419


>gi|154151369|ref|YP_001404987.1| phosphoesterase domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999921|gb|ABS56344.1| phosphoesterase, RecJ domain protein [Methanoregula boonei 6A8]
          Length = 466

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138
             A+ +I  A      I I    D DG +  A++ + ++         IP R V      
Sbjct: 8   KAASEQIAAAHE----ITIISHIDADGISCEAILSQAIARQG------IPVRSVFVRQLE 57

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVN 196
           P  M +   + +   I  D G+   + L     +  DV+++DHH  Q      P    + 
Sbjct: 58  PLTMPQV-PDDSSFKIFTDLGAGQQNLLAAKGLKEKDVLIVDHHVSQPGEITYPQVNCL- 115

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225
                   G   + AAGV +L+   +   
Sbjct: 116 ------PYGYTKMSAAGVSYLIAKALDEA 138


>gi|222099838|ref|YP_002534406.1| Phosphoesterase, RecJ domain protein [Thermotoga neapolitana DSM
           4359]
 gi|221572228|gb|ACM23040.1| Phosphoesterase, RecJ domain protein [Thermotoga neapolitana DSM
           4359]
          Length = 333

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 85  IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPN 138
           IV AI    +I++ G    D D  +SV  +   L           +  +P    +   P+
Sbjct: 4   IVDAISQYNRILVVGHIMPDGDCVSSVLSLTLGLERIGKEVRAAIDYRVPYVFENF--PH 61

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
              +E+ ++   +L+I VD  S           + +   VIDHH   
Sbjct: 62  IERIEQNVDFEPELVIVVDASSPDRIGRFQDLLKEVPSAVIDHHSTN 108


>gi|317968034|ref|ZP_07969424.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CB0205]
          Length = 383

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + + +N A+  +LE       G   P F      +   + +   HL +T   + S ++  
Sbjct: 11  SVAELNQAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLVDE-SASISG 60

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L      S G  + V G L  N+W       +++LD  P 
Sbjct: 61  VVWSSQRERLS--YQPSEGDGVLVVGKL--NFWASRANLCVQILDIRPA 105


>gi|315452913|ref|YP_004073183.1| single-stranded-DNA-specific exonuclease [Helicobacter felis ATCC
           49179]
 gi|315131965|emb|CBY82593.1| single-stranded-DNA-specific exonuclease [Helicobacter felis ATCC
           49179]
          Length = 111

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQ 536
            N   I + +   PYG GNP P+F      L+S R +     H+++  E  
Sbjct: 12  FNPEFIALYKRGEPYGVGNPTPLFEVC-APLKSWRFLGKTQQHVELVLEDG 61


>gi|124021951|ref|YP_001016258.1| exonuclease VII, large subunit [Prochlorococcus marinus str. MIT
           9303]
 gi|123962237|gb|ABM76993.1| Exonuclease VII, large subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 385

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N A+  +LE       G   P F      +   + +   HL +T    +  ++ A
Sbjct: 10  SVRDLNAAIGTLLER------GF-APRFLVE-ASVSKPQ-IKKGHLWLTLTDGN-ASITA 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +A+      L     +  G  + V G L  N+W       ++V+D  P 
Sbjct: 60  VAWASKLQQLTYRPAEGDG--VTVVGKL--NFWATRASLAVQVIDLRPS 104


>gi|33863908|ref|NP_895468.1| exonuclease VII, large subunit [Prochlorococcus marinus str. MIT
           9313]
 gi|33635491|emb|CAE21816.1| Exonuclease VII, large subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 385

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N A+  +LE       G   P F      +   + +   HL +T    +  ++ A
Sbjct: 10  SVRDLNAAIGTLLER------GF-APRFLVE-ASVSKPQ-IKKGHLWLTLTDGN-ASITA 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +A+      L     +  G  + V G L  N+W       ++V+D  P 
Sbjct: 60  VAWASKLQQLTYRPAEGDG--VTVVGKL--NFWATRASLAVQVIDLRPS 104


>gi|15669018|ref|NP_247822.1| hypothetical protein MJ_0831 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833617|sp|Q58241|Y831_METJA RecName: Full=Uncharacterized protein MJ0831
 gi|1591518|gb|AAB98830.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 432

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 133/437 (30%), Gaps = 50/437 (11%)

Query: 73  LILTDCDKAARRIVQAIYNS-EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
             L + +K  + I + I N    I +   +D DG +S  ++ + L   +   ++ +   +
Sbjct: 3   EKLKEIEKVTKAIKEKILNHYGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV---V 59

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
                     + K       L I  D GS   + +       I +         S     
Sbjct: 60  EHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIIKHNFNAIILDHHPPVIKDSFINEN 119

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLV-------LIYRILRQDNKVPLNFDLLSLLDL 244
              +NP+    + G   + A+GV +LV          +  I+     +  N  L     +
Sbjct: 120 IIQLNPHIFG-VDGSREITASGVCYLVAREFGYYDLSVLAIVGIIGDMQYNPLLGLNKFI 178

Query: 245 VALATVCDVVPLIGLNRAYVV--KGLMVARRQGNPGLKALIERVNISSPI-------TAE 295
           V  A     V ++      +   +          P +  L         +         +
Sbjct: 179 VNEAREYRYVKIMNDIVYNIYDVEIYKAIAYCTKPYIPDLASEGKAFKFLKDIGIDPNKK 238

Query: 296 NLGYMIGPSINAGGRIGESNL----GSRLLISDDSQELEMLAMKLDVL------------ 339
            L       + +        +      R LI    ++  +L+  L+ +            
Sbjct: 239 QLDDTDKKKLLSAIIFKYPKIENLLIDRYLIEHKVRDAFLLSEMLNAVGRNGLFAVGIGI 298

Query: 340 ---NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
              +     + + +L + +  ++ +   ++   +  +       G++G++A+ L +    
Sbjct: 299 CLEDDECIKIGNQILWEYKKNLINELKSVKLKKLNNIYYFEGKKGMIGIIASILVD---D 355

Query: 397 PSFAISFEEDGKGIGSGR-----SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451
                   E      S R        G ++   ++ A E G    GGGH +A+G  V + 
Sbjct: 356 KPVIGYHIEGDIAKFSARGNRDLVNRGLNLSVAMAVAKEFGG--NGGGHDVASGAVVSKD 413

Query: 452 NFGRLCDFFQKFAHNIV 468
                     +     +
Sbjct: 414 KVQEFLKRVDEIIGEQL 430


>gi|328480022|gb|EGF49040.1| single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus
          MTCC 5462]
          Length = 66

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY 56
          + ++W     Q        ++Q  A+P  +A +L  R + I  
Sbjct: 25 TQYQWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKISQ 66


>gi|254167796|ref|ZP_04874646.1| DHH family [Aciduliprofundum boonei T469]
 gi|197623324|gb|EDY35889.1| DHH family [Aciduliprofundum boonei T469]
          Length = 356

 Score = 45.1 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 83  RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139
            R+ +A   I   +   I   YDVDG  +  ++  +L       ++     +      + 
Sbjct: 5   ERLKKARELIDKGDDFRILTHYDVDGICAGGIIAHYLLKNGKRFHISFFRNVDKEEISDI 64

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
              E +       +I  D GS+  D+         ++IV+DHH+   +      L     
Sbjct: 65  VNEEDY-------VIMSDMGSSLIDS------LEGNIIVLDHHKPPGDNDK--ILHINPH 109

Query: 200 LDDLSGQGHLCAAGVVFLVLV 220
           LD  +G    C + + +++  
Sbjct: 110 LDGYNGAHDACGSTLAYMLTR 130


>gi|317177775|dbj|BAJ55564.1| hypothetical protein HPF16_0967 [Helicobacter pylori F16]
 gi|317178110|dbj|BAJ55899.1| hypothetical protein HPF16_1302 [Helicobacter pylori F16]
          Length = 129

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R   GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL 152
           +   +++    
Sbjct: 76  INDLLSKPCIF 86


>gi|237756076|ref|ZP_04584654.1| phosphoesterase, RecJ domain protein [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691769|gb|EEP60799.1| phosphoesterase, RecJ domain protein [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +   I +     + I+IF     D DG  S+  +  FL     N  M + D      
Sbjct: 1   MEMSIPIIERLKREEKDILIFTHENPDCDGIGSMIALYLFLKKLGKNVTMAMKDDFPFVC 60

Query: 136 GPNP---SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
              P    + +  IN    + I VD  S      +   +   ++I IDHH     E    
Sbjct: 61  DFMPEVNEIKKLPINHKFSVAILVDASSKKRAGTEVYAD---EIIRIDHHIGGEFESIYD 117

Query: 193 ALVNP 197
            + + 
Sbjct: 118 IVDDF 122


>gi|33239563|ref|NP_874505.1| exonuclease VII, large subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237088|gb|AAP99157.1| Exonuclease VII, large subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N A+ ++L        G   P F   +  +   + +   HL +T       ++ A
Sbjct: 10  SVGELNQAIGNLLSR------GF-APTFLL-HATVSKAQ-LKNGHLWLTLTD-GKASISA 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      +    ++  G  + + G L  N+W+      ++V+   P 
Sbjct: 60  VIWSSSLKNISFRPVEEDG--VELLGKL--NFWQNRATLVVQVIQIRPT 104


>gi|72383296|ref|YP_292651.1| exodeoxyribonuclease VII large subunit [Prochlorococcus marinus
           str. NATL2A]
 gi|72003146|gb|AAZ58948.1| Exodeoxyribonuclease VII large subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 386

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
           G   P F       +S   +   HL +T       ++ A+A+      L     Q  G  
Sbjct: 30  GF-APKFILEAAVSKSQ--IKKGHLWLTLTD-GKASVDAVAWSSTIKSLKFLPKQDDG-- 83

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + + G L  N+W    R  ++V D  P 
Sbjct: 84  VVIIGKL--NFWESQARVSVQVFDIRPS 109


>gi|288927246|ref|ZP_06421101.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae
           D17]
 gi|288335984|gb|EFC74410.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae
           D17]
          Length = 50

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591
           +  IAF    +           +   +   +  N ++ ++  QL++ D  P
Sbjct: 2   VNGIAFGQSAS----ARYIKSKRSFDIVYTIEDNVFKHNQ-VQLQIEDIRP 47


>gi|297619456|ref|YP_003707561.1| phosphoesterase DHHA1 [Methanococcus voltae A3]
 gi|297378433|gb|ADI36588.1| phosphoesterase DHHA1 [Methanococcus voltae A3]
          Length = 497

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 75  LTDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           L + +     I   I N +  I +   +D DG  S A+++  L   +   ++ I + + D
Sbjct: 11  LENFNNTINLIKSKIDNYQGIIRLITHHDPDGLTSGAILINTLMRINKQFHITIIENLND 70

Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
                        N   QL I  D GS   D +  A    ++ I++DHH VK +E     
Sbjct: 71  EKIEEFKKEATCKN--DQLFIFSDMGSGQIDKIINAK---LNAIILDHHPVKIKEYVINN 125

Query: 194 LVNPNRLDD 202
             N    ++
Sbjct: 126 EKNDKTNNN 134


>gi|20089795|ref|NP_615870.1| hypothetical protein MA0917 [Methanosarcina acetivorans C2A]
 gi|19914737|gb|AAM04350.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 714

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASV-----ALMMRFLSHCSVNANMYIPDR-- 130
               A+ I +AI++S  I++    D DG  S      A++         +A  Y   R  
Sbjct: 330 MLHVAKEIKKAIFHSTPIILRHHADADGITSAIAIERAILPLITEIGGADAEYYFYKRAP 389

Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179
                Y       +            +   L+I VD GST  D  +++ A   GI+++V+
Sbjct: 390 SKAPFYELADVTRDISFALEDYARHGQKMPLVILVDNGSTEEDVPSMRQAKVYGINMLVV 449

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           DHH    + +  Y + + N        G        
Sbjct: 450 DHH-HPDDIVDQYLIGHANPAHVGGDFGVTAGMLCA 484


>gi|170289047|ref|YP_001739285.1| phosphoesterase domain-containing protein [Thermotoga sp. RQ2]
 gi|170176550|gb|ACB09602.1| phosphoesterase RecJ domain protein [Thermotoga sp. RQ2]
          Length = 333

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCS----VNANMYIPDRI 131
            D+    IV+ +   +KI++ G    D D  +SV  +   L           +  IP   
Sbjct: 1   MDE----IVKVLSRHDKILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVF 56

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
                P+   +E+ +N   +L++ VD  S+            +  +VIDHH   +     
Sbjct: 57  EKF--PHIDKIEENLNFDPELLVVVDASSSDRIGKFQNLLDKVPSVVIDHHSTNTNFGNW 114

Query: 192 YAL 194
             +
Sbjct: 115 NWV 117


>gi|225848967|ref|YP_002729131.1| phosphoesterase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643889|gb|ACN98939.1| phosphoesterase, RecJ domain protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 325

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            +K    I +     + I+IF     D DG  S+  +  FL     N  M + D +   Y
Sbjct: 1   MEKTVPVIERLKREEKDILIFTHENPDGDGIGSMIALYLFLKKLGKNVTMAMKDDVPYVY 60

Query: 136 GPNPS---LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
              P    + +  IN    + I VD     +        Q  ++I IDHH     E    
Sbjct: 61  NFLPHVNEIKKLPINHKFSVAILVDAA---HRKRAGTEIQAHELIRIDHHVGGEFESIYD 117

Query: 193 ALVNP 197
            + + 
Sbjct: 118 CVDDY 122


>gi|73670910|ref|YP_306925.1| hypothetical protein Mbar_A3472 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398072|gb|AAZ72345.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 710

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASV-----ALMMRFLSHCSVNANMYIPDR-- 130
               A+ I +AI +S  I++    D DG  S      A++        ++A  Y   R  
Sbjct: 326 MLHVAKEIKKAILHSTPIILRHHADADGITSAIAIERAILPLITEIGGMDAEYYFYKRAP 385

Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179
                Y       +            +   LII VD GST  D  +++ A   GID++VI
Sbjct: 386 SKAPFYELADVTRDISFALEDLSRHGQKMPLIILVDNGSTEEDVPSMRQAKVYGIDMLVI 445

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           DHH    E +  Y + + N        G        
Sbjct: 446 DHH-HPDEIVDQYLIGHVNPAHVGGDFGVTAGMLCA 480


>gi|124485116|ref|YP_001029732.1| hypothetical protein Mlab_0289 [Methanocorpusculum labreanum Z]
 gi|124362657|gb|ABN06465.1| phosphoesterase, RecJ domain protein [Methanocorpusculum labreanum
           Z]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 35/198 (17%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            ++AA+ I   +   E + ++  +D DG +S A+M   L    +   +     + +    
Sbjct: 3   LEEAAKTIADRLRGMEYVEMYTHHDADGISSAAIMSIALKREGIAFRLRFLPVLTESDVT 62

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
           NP            + +  D G++               ++IDHH   +           
Sbjct: 63  NP-----------DISLLCDLGASC-------AGLPETTMIIDHHVPYTTSKYHINPRLF 104

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
               +      L AAG  +LV   +                  L  LV L  + D   L 
Sbjct: 105 GVDGET----ELSAAGCAYLVANALSDN-------------RDLAGLVLLGIIGDGQKLA 147

Query: 258 GLNRAYVVKGLMVARRQG 275
           G+N   + +G+       
Sbjct: 148 GMNEKIIGEGIANNLINP 165


>gi|332673827|gb|AEE70644.1| conserved hypothetical protein [Helicobacter pylori 83]
 gi|332674171|gb|AEE70988.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 129

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A  +   I+ + D D DG  + +++M       V +   + P R   GYG     
Sbjct: 17  DFLKEAKQHH-PIVFYTDNDCDGMLASSVLMSMCYRLGVKDFFFFSPLRNAHGYGFTDLA 75

Query: 142 MEKFINEGAQL 152
           +   +++    
Sbjct: 76  INDLLSKPCIF 86


>gi|296108700|ref|YP_003615649.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus
           ME]
 gi|295433514|gb|ADG12685.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus
           ME]
          Length = 430

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 160/442 (36%), Gaps = 62/442 (14%)

Query: 73  LILTDCDKAARRIVQAIYNS----EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128
           + L+  +K   ++ + I N     + I +   +D DG +S  ++ + L   +    + + 
Sbjct: 1   MELSGLEK-IEKLSKEIKNRIVEYDFIKVITHHDTDGLSSGTILTKTLFRANKTFQVKVV 59

Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKS 186
           + +      + ++++K +++   L I  D GS     +     + +D I++DHH  +++ 
Sbjct: 60  EHL------SRNVIDKLVSKDNSLYIFADMGSGQIHDIL---EKEVDAIILDHHPPEIEE 110

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI------------------------ 222
           E I     +NP+      G   + A+G  + V                            
Sbjct: 111 EFIDNIVQLNPHLYG-FDGAKEITASGTCYFVAREFGYYDLSQMAIVGMIGDMQFPPMGL 169

Query: 223 -------YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG----LMVA 271
                   R  R           +  +++      C    +  LN     +     L + 
Sbjct: 170 NKFIVNEAREKRYIKIFNDIIYNIYGVEIYKAMAYCTKPYIEDLNSEAKAEKFLLNLKID 229

Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331
            ++ +   +   + ++       E    +I   +    ++ +++L S +L +        
Sbjct: 230 PKKKDLSKEEYKKIISHLIFKYPEEAEKLIIERVLLRHKVRDAHLLSEMLNAVGRHGYFS 289

Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391
           + + + + +     + + +L   +  +L++   ++  S+  ++      G +G++A  L 
Sbjct: 290 IGIGIGLEDDECIRIGNKVLWDYKKALLSEIKRVELKSLRNIKYFEGRKGYIGIVAGILA 349

Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIE-----GFDIGKMVSFAVEEGILVKGGGHAMAAGL 446
           ++     + I   E      S R  +     G ++ K++S A E G    GGGH +A+G 
Sbjct: 350 KEKPVIGYYI---EGDVAKFSARGNKKLVDRGLNLSKVMSIAKEFGG--TGGGHNIASGA 404

Query: 447 TVERVNFGRLCDFFQKFAHNIV 468
            V +       +   +     +
Sbjct: 405 MVPKEKVKEFLERVDELIGEQL 426


>gi|322371457|ref|ZP_08046006.1| phosphoesterase RecJ domain protein [Haladaptatus paucihalophilus
           DX253]
 gi|320548989|gb|EFW90654.1| phosphoesterase RecJ domain protein [Haladaptatus paucihalophilus
           DX253]
          Length = 470

 Score = 44.4 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 23/179 (12%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R+  A    + +++    D DG  S A+    L    +                +   
Sbjct: 16  ADRLRDA----DDVLLASHIDADGLTSAAIASSALERAGLPFETVF------CKQLDAEA 65

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200
           +        + ++  D GS   D +    + G  + ++ DHHQ    +   +       L
Sbjct: 66  LAAIAATDHETVLFTDFGSGQLDIIAEHESAGDFEPVIADHHQPADADTEFHLNPLLFGL 125

Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259
           D  S       AG  +++   +          P   D   L  L  +  V D+    G 
Sbjct: 126 DGSSEL---SGAGASYVLARAL---------EPDAGDNRDLAALAVVGAVGDMQISDGE 172


>gi|303243738|ref|ZP_07330079.1| phosphoesterase RecJ domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302485980|gb|EFL48903.1| phosphoesterase RecJ domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 452

 Score = 44.4 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 142/461 (30%), Gaps = 95/461 (20%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM----YIPDRIVD 133
             K   RI     ++  I +   +D DG  S AL+++ L   +   ++    Y+    VD
Sbjct: 19  LKKITERIK---NHNGLIRVITHHDTDGLTSGALIIKMLYRLNKEFHLSIVEYLSKEFVD 75

Query: 134 GYGPNPSLMEKFINEGAQ------LIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--K 185
             G   +      +          L I  D GS+    +    NQG++ I++DHH     
Sbjct: 76  KLGEEYNNRYNNNDNNNNNNEDNILYIFCDMGSS---RINDILNQGLNAIILDHHPPVIN 132

Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245
             E+     +N + L        + A+GV +LV                 F    L  L 
Sbjct: 133 DLEVKEIYQLNAHILGINGA-KEISASGVCYLV--------------AREFGFYDLSALA 177

Query: 246 ALATVCDVV--PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303
               + D+   P  G+N+  + +        G                    N    I  
Sbjct: 178 ITGAIGDMQHKPFSGMNKYIINEAREHRYLTGILKDIIYNCYDLPVWKSMLYNTQPYIRE 237

Query: 304 SINAGGRIGESN---------------------------------LGSRLLISDDSQELE 330
             N    I                                     +  R +I     +  
Sbjct: 238 LNNKEKIINFLKKLNIDPEKRNLNEEDRQKLKIALMPYVEKEEDIIVDRYVIKHKVDDAF 297

Query: 331 MLAMKLDVL---------------NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375
            L+  L+                 +     +   +  + + +++ +  + Q  S+  +E 
Sbjct: 298 YLSELLNACGRKGLGSVGIGAAVEDDECINIAKDIYIEYKEEIIQEIRNTQINSLNNIEY 357

Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK-GIGSGR-----SIEGFDIGKMVSFAV 429
                G+VG++A+     F +    +   E+G+    S R       EG ++ + +  A 
Sbjct: 358 FFGKKGMVGIIAS----LFVKDKPVLGIYEEGEYYKISSRGNKNLVNEGLNLSEAMKIAY 413

Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
           + G    GGGH +A+G  V +++         +     +  
Sbjct: 414 KFGG--NGGGHNVASGARVPKIHLDEFLKEVDEIVGKQLKK 452


>gi|21228136|ref|NP_634058.1| hypothetical protein MM_2034 [Methanosarcina mazei Go1]
 gi|20906581|gb|AAM31730.1| conserved protein [Methanosarcina mazei Go1]
          Length = 710

 Score = 44.4 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASV-----ALMMRFLSHCSVNANMYIPDR-- 130
               A+ I +AI +S  I++    D DG  S      A++         +A  Y   R  
Sbjct: 326 MLHVAKEIKKAILHSTPILLRHHADADGITSAIAIERAILPLITEIGGSDAEYYFYKRAP 385

Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179
                Y       +            +   L+I VD GST  D  A++ A   GID++VI
Sbjct: 386 SKAPFYELADVTRDISFALEDYARHGQKMPLVIQVDNGSTEEDVPAMRQANVYGIDMLVI 445

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215
           DHH    + +  Y + + N        G        
Sbjct: 446 DHH-HPDDIVDQYLIGHVNPAHVGGDFGVTAGMLCA 480


>gi|217033161|ref|ZP_03438618.1| hypothetical protein HPB128_13g2 [Helicobacter pylori B128]
 gi|298737055|ref|YP_003729585.1| hypothetical protein HPB8_1564 [Helicobacter pylori B8]
 gi|216945110|gb|EEC23811.1| hypothetical protein HPB128_13g2 [Helicobacter pylori B128]
 gi|298356249|emb|CBI67121.1| hypothetical protein HPB8_1564 [Helicobacter pylori B8]
          Length = 265

 Score = 44.4 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141
             + +A      I+ + D D DG  + +++M       + +   + P R V GYG     
Sbjct: 17  DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNVHGYGFTDLA 75

Query: 142 MEKFINEGAQL 152
           +   +++    
Sbjct: 76  INDLLSQPYIF 86


>gi|149370581|ref|ZP_01890270.1| hypothetical protein SCB49_13995 [unidentified eubacterium SCB49]
 gi|149356132|gb|EDM44689.1| hypothetical protein SCB49_13995 [unidentified eubacterium SCB49]
          Length = 340

 Score = 44.4 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 27/194 (13%)

Query: 93  EKIMIFGDYDVDG--AASVALMMRFLSHCSVNANMYIPDRIVDG------------YGPN 138
           +KI+I G  + DG    S + +  FL     +  + +P+   D             Y  N
Sbjct: 17  KKIVIVGHKNPDGDAVGSTSALSLFLKSQGHDTQVIVPNDFPDFLKWMPASEDILIYSQN 76

Query: 139 PSLMEKFINEGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196
            +   + I +   +  T+D    +   D     TN   D I+IDHHQ   +         
Sbjct: 77  VTQANQLIKDADIIC-TLDFNSFTRVGDMQDALTNATADYIMIDHHQSPDDYAVLT---- 131

Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
                  S         +V+  +  + +       +  N     + D  +          
Sbjct: 132 ------YSDTTMGSTCEMVYHFIDAMGQTNHISEAMATNMYTGIMTDTGSFRFASTTAKT 185

Query: 257 IGLNRAYVVKGLMV 270
             +    +  G+  
Sbjct: 186 HNVIAHLMETGIQH 199


>gi|156042990|ref|XP_001588052.1| hypothetical protein SS1G_11295 [Sclerotinia sclerotiorum 1980]
 gi|154695679|gb|EDN95417.1| hypothetical protein SS1G_11295 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 374

 Score = 44.4 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---N 122
             + P P      + A   I +     +  +I  D D DG ++  +M R L    +   N
Sbjct: 37  EEIWPAPRD--QLESAYDFIRECAKAQKPTLIVPDKDADGLSAGVIMYRTLIKLGLEEKN 94

Query: 123 ANMYIPDRIVDGYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181
            ++++   +  G   +     +    +    +I +D GS     +    ++    ++IDH
Sbjct: 95  LDIHL---VRKGSNIHEEYERKAMAEKKPSYVIVLDQGSRGGLPVID--DKSARSMIIDH 149

Query: 182 HQVKSEEIPAYALV 195
           H        A   +
Sbjct: 150 HFSDDFPKNAINFI 163


>gi|154151775|ref|YP_001405393.1| phosphoesterase domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|154000327|gb|ABS56750.1| phosphoesterase, RecJ domain protein [Methanoregula boonei 6A8]
          Length = 405

 Score = 44.4 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 25/50 (50%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
            +++A+ + + I   + + ++  +D DG A+ A++   +    +   + I
Sbjct: 3   LEESAKVVAEQIRRQQFVEVYAHHDADGIAAGAILCHAMLRAGIRFRLRI 52


>gi|124024875|ref|YP_001013991.1| exonuclease VII, large subunit [Prochlorococcus marinus str.
           NATL1A]
 gi|123959943|gb|ABM74726.1| Exonuclease VII, large subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 386

 Score = 44.4 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
           G   P F      +   + +   HL +T       ++ A+A+      L     Q  G  
Sbjct: 30  GF-APKFIVE-ATVSKSQ-IKKGHLWLTLTD-GKASVDAVAWSSTIKSLKFLPKQDDG-- 83

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + + G L  N+W    R  ++V D  P 
Sbjct: 84  VVIIGKL--NFWESQARVSVQVFDIRPS 109


>gi|76800756|ref|YP_325764.1| single-stranded-DNA-specific exonuclease [Natronomonas pharaonis
           DSM 2160]
 gi|76556621|emb|CAI48192.1| single-stranded-DNA-specific exonuclease [Natronomonas pharaonis
           DSM 2160]
          Length = 478

 Score = 44.0 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 11/126 (8%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141
           A R+++A    + +++    D DG  S A+    L    +   +            +   
Sbjct: 19  AERLLEA----DSVLLASHIDADGLTSAAVAATALERAGLPFEVVF------EKQLDADA 68

Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200
           +        + ++  D GS   D +      G    ++ DHHQ        +       +
Sbjct: 69  LAALAGREYETVLFTDFGSGQLDIIADHEAAGDFTPVIADHHQPAEATTDYHLNPLLEGI 128

Query: 201 DDLSGQ 206
           D  S  
Sbjct: 129 DGASEL 134


>gi|169596751|ref|XP_001791799.1| hypothetical protein SNOG_01145 [Phaeosphaeria nodorum SN15]
 gi|160707366|gb|EAT90794.2| hypothetical protein SNOG_01145 [Phaeosphaeria nodorum SN15]
          Length = 830

 Score = 44.0 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 19/172 (11%)

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDGYGPNPSLMEKFI 146
            + ++ +I  D D DG +S +++   L+   ++    ++Y P     G   +       I
Sbjct: 443 RSGKQTLILPDKDADGLSSGSILHHTLTTLGLSPSMISVYFPS---KGANIHDESTADAI 499

Query: 147 NEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205
           +  +   I V D GS +   L          +VIDHH       P  A       D    
Sbjct: 500 SAVSPTFIFVLDQGSRNTPPLT---PAPHTCLVIDHHFADECGFPDGAD-YVTAHDCPPV 555

Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                +A + + + + ++  L           L +L     L +     P  
Sbjct: 556 ---ATSALLTYHICLPLHADLSDK-----ISWLCALGTHGDLGSTIKWQPPF 599


>gi|116754783|ref|YP_843901.1| phosphoesterase domain-containing protein [Methanosaeta thermophila
           PT]
 gi|116666234|gb|ABK15261.1| phosphoesterase, RecJ domain protein [Methanosaeta thermophila PT]
          Length = 722

 Score = 44.0 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-----VALMMRFLSHCSVNANMYIPDR-- 130
               A+ I +AI+ S+ I+I    D DG ++      A++         +A  Y   R  
Sbjct: 332 MRAVAKAIRRAIFKSKPIVIRHHADADGISAAVAIETAILPLMKEVGGPDAEYYSYRRAP 391

Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179
                Y       +            +   L++ +D GST  D  A+++A   G++++V+
Sbjct: 392 SKAPFYELEDVTKDLSYALEDQSRYGQKMPLVVLIDNGSTEEDVPAMKHAQVYGLEMVVV 451

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
           DHH   ++ +  Y + + N        G     
Sbjct: 452 DHH-HPNDIVDQYLIAHVNPAHAGGDFGITTGM 483


>gi|148270327|ref|YP_001244787.1| phosphoesterase domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147735871|gb|ABQ47211.1| phosphoesterase, RecJ domain protein [Thermotoga petrophila RKU-1]
          Length = 333

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCS----VNANMYIPDRI 131
            D+    IV+ +   +KI++ G    D D  +SV  +   L           +  IP   
Sbjct: 1   MDE----IVKVLSRHDKILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVF 56

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185
                P+   +E+ +N   +L++ VD  S             +  +VIDHH   
Sbjct: 57  EKF--PHIDKIEENLNFDPELLVVVDVSSPDRIGKFQDFLDKVPSVVIDHHSTN 108


>gi|288560822|ref|YP_003424308.1| archaea-specific RecJ-like exonuclease [Methanobrevibacter
           ruminantium M1]
 gi|288543532|gb|ADC47416.1| archaea-specific RecJ-like exonuclease [Methanobrevibacter
           ruminantium M1]
          Length = 780

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 27/154 (17%)

Query: 59  DFL--NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VAL---M 112
           DFL  +P +  L P         +AA+ I +A+ +   I++    D DG  S VA+   +
Sbjct: 343 DFLIESPVLERLKPK------MREAAKVIRRAVLDGRSILVRHHNDADGICSGVAIEKAV 396

Query: 113 MRFLSHCSV--NANMYIPDR---IVDGYGPNPSLME--------KFINEGAQLIITVDCG 159
           + +L   +   +A  +   R       Y     + +            +   LI+ +D G
Sbjct: 397 IPYLKENNPDNDAEYHYFKRSPSKAPFYELEDVVKDLSFALEDLDRHGQKLPLIVLLDNG 456

Query: 160 STSYDAL--QYATNQGIDVIVIDHHQVKSEEIPA 191
           ST  D +    A    I+++VIDHH   +     
Sbjct: 457 STEEDIVALMQAKIYDIEIVVIDHHSPGNLITKT 490


>gi|303240813|ref|ZP_07327326.1| phosphoesterase RecJ domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302591701|gb|EFL61436.1| phosphoesterase RecJ domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 318

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 83  RRIVQAIYNSEKIMIFGDYDVDG---AASVALMMRFLSHCSVNANMY----IPDRIVDGY 135
           +RI+ AI N++ I I     VDG    +SVAL +  L     +  +Y    IP       
Sbjct: 4   KRIIDAINNAKSIAILPHVSVDGDGLGSSVALAL-ALEKMGKDITVYIEEEIPATYEFLP 62

Query: 136 GPNPSLMEKFINEGAQLIITVDCG 159
           G +   + K   +   L++ +D G
Sbjct: 63  GKDYVEVYKSNPKKHDLVLALDTG 86


>gi|160902050|ref|YP_001567631.1| phosphoesterase domain-containing protein [Petrotoga mobilis SJ95]
 gi|160359694|gb|ABX31308.1| phosphoesterase RecJ domain protein [Petrotoga mobilis SJ95]
          Length = 335

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRI---- 131
             +  + IV+ I  ++ I+I G    D D  +S+  M   L          I D I    
Sbjct: 1   MSENLKEIVEEISKNDNILIVGHILPDGDDVSSLVSMTLGLEKLGKKVTAAIDDEIPEYL 60

Query: 132 -----VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
                V         +EK I +   +++ +DC S               V++IDHH   +
Sbjct: 61  LQFPLVKSKIKKFEDVEKIIYKNYDIMVILDCSSPDRIGRFEKYLNAFHVLLIDHHVTNT 120

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227
                  +              L +  V +   +    +L 
Sbjct: 121 YFGNLNWVDPSMASTAQMVYRILTSLNVEYDKELATMNLLG 161


>gi|219853096|ref|YP_002467528.1| phosphoesterase RecJ domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219547355|gb|ACL17805.1| phosphoesterase RecJ domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 468

 Score = 43.6 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 23/231 (9%)

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           + I    D DG  S A++   +    + A   YI  R +D       L  + + E   L 
Sbjct: 23  VTIISHIDADGITSEAILAEAVQRAGIPATTHYI--RQLD------PLTIRTVPEDRSLK 74

Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213
           + VD G+   + L+       +V++ DHH  +   +P              G   L AAG
Sbjct: 75  VFVDLGAGQQNLLEERGLTVDEVLIADHHVAQPATLPY-----QQVNGVPYGHTRLSAAG 129

Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA------TVCDVVPLIGLNRAYVVKG 267
           V +L+   + R       V +  ++  ++    L       T+ D     G  RA     
Sbjct: 130 VAYLIAKEMDRKNTDLASVAVVGNVGDMMARETLGLTGIARTIVDDGVANGSIRATAR-D 188

Query: 268 LMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSINAGGRIGESNL 316
           L        P    L    +   P  + ++         +    +  +   
Sbjct: 189 LNCYGTSTRPIHVCLSYNDDPLLPGISNDINGSLRFLQKVGVPLKTRDGRW 239


>gi|239617847|ref|YP_002941169.1| phosphoesterase RecJ domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506678|gb|ACR80165.1| phosphoesterase RecJ domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 326

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 89  IYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPNPSLM 142
           I  ++KI++ G    D D  +SV  +   L           +  IP +  +    +  + 
Sbjct: 11  IEQAKKIVVCGHIMPDGDCISSVMSLSLGLEKLGKKVTPAIDWEIPSKFYEFPHVDKIIP 70

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQ-GIDVIVIDHHQVKSEEIPAYALVNPNRLD 201
                + + L+I VD  S        +  + GI  IVIDHH+  +       +       
Sbjct: 71  YSEELQLSDLLIVVDASSPDRIGGFQSLMKSGIRTIVIDHHKTNTYFGNVCWV------- 123

Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256
                 +   A +V+ +L L+      D        LL+ L +           +
Sbjct: 124 ---DPKYSSTAQMVYHLLKLL------DVNYDEELALLNYLGIATDTGFFRYSSV 169


>gi|157363605|ref|YP_001470372.1| phosphoesterase domain-containing protein [Thermotoga lettingae
           TMO]
 gi|157314209|gb|ABV33308.1| phosphoesterase RecJ domain protein [Thermotoga lettingae TMO]
          Length = 322

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 85  IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPN 138
           I+  I  S+ I++ G    D D  +SV  +   L           +  +P    + YG  
Sbjct: 6   IISQINESKFILVTGHIMPDGDDISSVTSLAVGLERLGKTVVGSIDYPVPWYYRNFYGVE 65

Query: 139 P-SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
                E+  +    LII VDC +                IVIDHH
Sbjct: 66  KLKTYEQAKDLDPDLIIVVDCSTPDRVGRFQNLLNDRKTIVIDHH 110


>gi|113953310|ref|YP_731724.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CC9311]
 gi|123031574|sp|Q0I748|EX7L_SYNS3 RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName:
           Full=Exodeoxyribonuclease VII large subunit;
           Short=Exonuclease VII large subunit
 gi|113880661|gb|ABI45619.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. CC9311]
          Length = 390

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564
           G   P F      +   + V   HL +T    +  ++ A+A+      L    + + G  
Sbjct: 25  GF-APRFVIQ-ATVSRPQ-VKKGHLWLTLSDGE-ASITAVAWASKLKQLD--FVPADGDG 78

Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + V G L  N+W       ++VLD  P 
Sbjct: 79  VTVIGKL--NFWSARASLAVQVLDMRPS 104


>gi|222480957|ref|YP_002567194.1| phosphoesterase DHHA1 [Halorubrum lacusprofundi ATCC 49239]
 gi|222453859|gb|ACM58124.1| phosphoesterase DHHA1 [Halorubrum lacusprofundi ATCC 49239]
          Length = 473

 Score = 43.2 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 23/190 (12%)

Query: 70  PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129
           P P +    +  A R+  A    +++++    D DG  S A+    L+   ++  +    
Sbjct: 7   PVPELTARANACAGRLRAA----DRVLLASHIDADGLTSGAVASTALARAGIDHEVVF-- 60

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEE 188
                   +   +         +++  D GS   D +    ++G    ++ DHHQ    +
Sbjct: 61  ----EKQLDAESIAGIAAREFDVVLFTDFGSGQLDVIVGHEDRGDFVPVIADHHQPADRD 116

Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248
              +       L+  S       AG  +++   +            + D   L  L  + 
Sbjct: 117 TDFHLNPLLEGLNGASEL---SGAGASYVLARAL---------EGPDGDNRDLAALAVVG 164

Query: 249 TVCDVVPLIG 258
            V D+    G
Sbjct: 165 AVGDMQDSDG 174


>gi|150400577|ref|YP_001324343.1| phosphoesterase domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013280|gb|ABR55731.1| phosphoesterase RecJ domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 459

 Score = 43.2 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 43/239 (17%)

Query: 82  ARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY----- 135
             +I   I N +  I I    D DG  S A++++ L+  +   ++ I +++ + +     
Sbjct: 18  VEKITNKIKNHDGLIRIITHNDADGLTSGAIIIKLLTRQNKKFHLSIVEQLSEDFINELG 77

Query: 136 ----------GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--Q 183
                            +   N  + L I  D GS   + +       ++ I++DHH  +
Sbjct: 78  KENTINNIISKNESKGSDDHNNSNSVLYIFSDMGSGQINKIL---ENNLNSIILDHHPTE 134

Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
           +   EI     +NP+    + G   + A+GV +LV                 F    L  
Sbjct: 135 INDIEIENILQLNPHIFK-IDGSNEISASGVCYLV--------------AREFGYYDLSV 179

Query: 244 LVALATVCDVV--PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300
           L     + D+   P IGLN+  + +G+             L + +     I+  +    
Sbjct: 180 LAITGAIGDMQHLPFIGLNKFILNEGMEKQHIN-----GILRDIIYNCYDISITDSILF 233


>gi|108757296|ref|YP_631770.1| hypothetical protein MXAN_3580 [Myxococcus xanthus DK 1622]
 gi|108461176|gb|ABF86361.1| hypothetical protein MXAN_3580 [Myxococcus xanthus DK 1622]
          Length = 368

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 14/127 (11%)

Query: 62  NPSIRLLMPDPLILTDCDK----AARR-IVQAIY-----NSEKIMIFGDYDVDGAASVAL 111
            P+   L   P++L         A+   +  A           +++     VDG A+ AL
Sbjct: 7   RPTALNLH--PMLLGHMKAPHWPASEEALANARDFLMTLKDRHVVVAPHPSVDGLAAGAL 64

Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171
           M+R L          +P +    +  +P+  ++         + ++  S + D       
Sbjct: 65  MLRALQAMGARVKAQVPAKGE--HALSPTFQQRLRAAQPDAWVVLEMSSDAMDDSVAPPG 122

Query: 172 QGIDVIV 178
               ++ 
Sbjct: 123 LPTLIVA 129


>gi|170291031|ref|YP_001737847.1| phosphoesterase domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175111|gb|ACB08164.1| phosphoesterase RecJ domain protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 445

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 91  NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
               + +    D DG +S  + +  L          +P  +      + +L+ +   E  
Sbjct: 22  KGSHVRVISHIDADGLSSAGIFISILKRF------RVPFHLSSVKYVSDTLISELKKEPY 75

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
            L I +D GS   + L    +    V V+DHH+  SE+IP           D      + 
Sbjct: 76  DLYIFLDLGSGEVELL---KSMEKRVFVVDHHRPSSEDIPMLNPFTQGIDGD----RDVS 128

Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP---LIGLNRAYVVKG 267
           ++G+ FL    +YR   +D          S++ +     + D+       GLN A +  G
Sbjct: 129 SSGLCFL----LYREFFED---------YSMVPVALTGALGDLQENGGFSGLNEAILNWG 175

Query: 268 LMVARRQGN 276
           +     +  
Sbjct: 176 VERGIIEVR 184


>gi|30143058|gb|AAP15445.1| unknown [Staphylococcus aureus subsp. aureus]
          Length = 111

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381
           ++D  +E   LA +++  N+ R+ + + + E+A A   T+         +++  + WH G
Sbjct: 1   MTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAKENWHEG 58

Query: 382 IVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427
           ++G++A+++ E F  P+  ++   E     GS RSI+   + +++S 
Sbjct: 59  VLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSMFEILSA 105


>gi|88603751|ref|YP_503929.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1]
 gi|88189213|gb|ABD42210.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1]
          Length = 408

 Score = 42.8 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 35/198 (17%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137
            + AA+ +   +     + I   +D DG A+ ++M   L    +   + I  R+ +   P
Sbjct: 3   IETAAKDLAYELSRQSSVEILCHHDADGIAAGSIMAMALYRAGIPFRLRITHRLSEDNIP 62

Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197
                          ++  D G+              + +VIDHH    E          
Sbjct: 63  KTRP-----------LLLCDLGAG-------LAGLPEETMVIDHHLPFFEGPHHV----N 100

Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
            R D + G   LCAAG  +LV   +                  L  L  L  + D   L 
Sbjct: 101 PRYDGIDGDTDLCAAGTAYLVANALGDN-------------RDLAGLTLLGVIGDGQTLT 147

Query: 258 GLNRAYVVKGLMVARRQG 275
           G N+   +  L       
Sbjct: 148 GKNQDIYLDALGNGIISK 165


>gi|20093597|ref|NP_613444.1| RecJ-like exonuclease [Methanopyrus kandleri AV19]
 gi|19886456|gb|AAM01374.1| Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn
           finger domain [Methanopyrus kandleri AV19]
          Length = 752

 Score = 42.8 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 19/132 (14%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF----LSHCSVN--ANMYI 127
           +     + A+ I +A+     ++I    D DG +    +       L   + +  A  + 
Sbjct: 347 LWPRMREVAKEIKRAVLEGRPVLIRHHADADGISGGVALEEAILPILRENNPDPEAEYHF 406

Query: 128 PDRI----------VDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYD--ALQYATNQGI 174
             R                 N +L +         L++ +D G T  D  A++     G+
Sbjct: 407 YKRFPNKAPIYTLEDASRDLNHALEDVHRYGHQVPLLVLLDIGCTEEDVPAIEEMKAYGV 466

Query: 175 DVIVIDHHQVKS 186
           DV+VIDHH    
Sbjct: 467 DVLVIDHHYPGE 478


>gi|327401698|ref|YP_004342537.1| phosphoesterase RecJ domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327317206|gb|AEA47822.1| phosphoesterase RecJ domain protein [Archaeoglobus veneficus SNP6]
          Length = 414

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 71  DPLILTD----CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126
           D  +  D      +    I +  Y+ E  +I    D DG  S A++ +      ++ N+ 
Sbjct: 4   DGFLNHDFIKKMTQMGEMIKE--YSGEHAVIVHHNDADGICSAAILSKLCELLDLSVNLI 61

Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186
               I   +      +        +++I  D    + + +    +    V +IDHH  KS
Sbjct: 62  C---IEKVHSSIVETI--HNRYEGEVVIYTDLAGLAAEMIDKVNDGRCTVWIIDHHPAKS 116

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
            E     + +P     +SG   + A+ + +L+   I+  ++    + +   +    D   
Sbjct: 117 VESETVFVFDPELFG-VSGDTFVSASTLNYLLSACIHEKMKSYAYLAVIGSVGDYHDRSG 175

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282
                D   ++          + +  ++    ++  
Sbjct: 176 GVLGFDRF-VLDEAVDLGQAKIKIEGQKERYYIQFF 210


>gi|188997397|ref|YP_001931648.1| phosphoesterase RecJ domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932464|gb|ACD67094.1| phosphoesterase RecJ domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 330

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            + +   I +     + I++F     D DG  S+  +  FL     N  M + D      
Sbjct: 1   MEMSIPIIERLKREEKDILLFTHENPDCDGIGSMIALYLFLKKLGKNVTMAMKDDFPFVC 60

Query: 136 GPNP---SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192
              P    + +  IN    + I VD  S     ++   +   +VI IDHH     E    
Sbjct: 61  DFMPEVNEIKKLPINHKFSVAILVDASSKKRAGVEICAD---EVIRIDHHIGGEFESIYD 117

Query: 193 ALVNP 197
            + + 
Sbjct: 118 IVDDF 122


>gi|218672101|ref|ZP_03521770.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium etli
          GR56]
          Length = 47

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 4  QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAI 39
          +AFLGVE S    RWV+ L Q G NRALA++Q    
Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQFTGC 45


>gi|126179628|ref|YP_001047593.1| phosphoesterase, DHHA1 [Methanoculleus marisnigri JR1]
 gi|125862422|gb|ABN57611.1| phosphoesterase, DHHA1 [Methanoculleus marisnigri JR1]
          Length = 465

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135
            D  +AA  I  A    + + I    D DG ++ A++ + L+  S+        ++    
Sbjct: 5   NDVRRAADLICDA----DSVTIVSHIDADGISTEAILAQALTRESMPVESVFVRQLE--- 57

Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195
                +  + + +   L +  D G+   + L+       +V+++DHH V      AY  V
Sbjct: 58  ----PMAMRHVPKDGSLKLFADLGAGQQNLLEEHGLSADEVLILDHH-VGQPCGTAYPQV 112

Query: 196 NPNRLD 201
           N     
Sbjct: 113 NSLDHG 118


>gi|145498431|ref|XP_001435203.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402333|emb|CAK67806.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3076

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/359 (8%), Positives = 70/359 (19%), Gaps = 24/359 (6%)

Query: 131  IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190
              DGY        +  +   Q  IT      + + L Y  N   +  +            
Sbjct: 1375 CQDGYYEANLSQCQICHISCQTCITSSNNCLTCETLLYYRNFNNNQCICQ-----DGYYD 1429

Query: 191  AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
                +     D                    I  ++   N+            LV     
Sbjct: 1430 IGISMCQKCNDVCKTCQVTAYKCYSCYQSEHIRTLV--SNQCICQTGYYDNGTLVCQKCS 1487

Query: 251  CDVVPLIGLNRAYVVKGLMVARRQ-----GNPGLKALIERVNISSPITAENLGYMIGPSI 305
             + +   G         +   R         P +       N             +  S 
Sbjct: 1488 NECLTCSGSENHCTSCDINQKRIDQSVIYRCPCMTGFYSDENKICQKCHIKCTSCLNQSD 1547

Query: 306  NAGGRIGESNLGSRLLISDDSQELEML----AMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361
            +       +      L  +   +         ++    NQ  +   +            +
Sbjct: 1548 HCLSCKLVTGSNRYTLSQNCDCKAGYFDDGIQLQCQQCNQRCKTCVNTSTNCLTCFDSLR 1607

Query: 362  CDDIQQASVIVVEGD--RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG- 418
             +      +     D  ++        +  + +     +              G    G 
Sbjct: 1608 FNPPNCNCIDGNYEDAQKYCQPCNHECSTCINKPENCLTCKPGRMTAQCVCQDGYFEAGV 1667

Query: 419  -----FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472
                  +I            L   G    + G +     F  L +   +   ++     
Sbjct: 1668 QECLKCNIQCNTCNQTASNCLSCKGDRINSPGCSCPLGYFDDLINQNCQLCDSLCQTCD 1726


>gi|307638063|gb|ADN80513.1| hypothetical protein hp908_1392 [Helicobacter pylori 908]
 gi|325996666|gb|ADZ52071.1| hypothetical protein hp2018_13511 [Helicobacter pylori 2018]
 gi|325998256|gb|ADZ50464.1| hypothetical protein hp2017_13471 [Helicobacter pylori 2017]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 85  IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143
           + +A  +   I+ + D D DG  + +++M       + +   + P R   GYG     + 
Sbjct: 19  LEEAKQHH-PIIFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALN 77

Query: 144 KFINEGAQL 152
             +++    
Sbjct: 78  DLLSQPCIF 86


>gi|15644343|ref|NP_229395.1| hypothetical protein TM1595 [Thermotoga maritima MSB8]
 gi|281412632|ref|YP_003346711.1| phosphoesterase RecJ domain protein [Thermotoga naphthophila
           RKU-10]
 gi|4982166|gb|AAD36662.1|AE001804_6 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|281373735|gb|ADA67297.1| phosphoesterase RecJ domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 333

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCS----VNANMYIPDRI 131
            D+    IV+ +   ++I++ G    D D  +SV  +   L           +  IP   
Sbjct: 1   MDE----IVKVLSQHDRILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVF 56

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
                P    +E+  N   +L++ VD  S             +  +VIDHH   +     
Sbjct: 57  EKF--PYIDKIEENPNFDPELLVVVDASSPDRIGKFQDLLDKVPSVVIDHHSTNTNFGNW 114

Query: 192 YAL 194
             +
Sbjct: 115 NWV 117


>gi|15791135|ref|NP_280959.1| hypothetical protein VNG2333C [Halobacterium sp. NRC-1]
 gi|169236890|ref|YP_001690090.1| single-stranded-DNA-specific exonuclease [Halobacterium salinarum
           R1]
 gi|10581745|gb|AAG20439.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727956|emb|CAP14744.1| single-stranded-DNA-specific exonuclease [Halobacterium salinarum
           R1]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 7/128 (5%)

Query: 95  IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154
           +++    D DG  S  +    L          IP  +V     +   +          ++
Sbjct: 28  VLVASHIDADGLTSAGIASTALER------AAIPHEVVFSKQLDDEEIADIAGANHGTVL 81

Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214
             D GS   DA+      G    VI  H   +E       +NP     + G   L  AG 
Sbjct: 82  FTDFGSGQLDAITAHERAGEFTPVIADHHQPAENAATDYHLNPLLEG-VDGGTELSGAGA 140

Query: 215 VFLVLVLI 222
            +++   +
Sbjct: 141 TYVLARAL 148


>gi|124485558|ref|YP_001030174.1| hypothetical protein Mlab_0735 [Methanocorpusculum labreanum Z]
 gi|124363099|gb|ABN06907.1| phosphoesterase, RecJ domain protein [Methanocorpusculum labreanum
           Z]
          Length = 612

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 28/155 (18%)

Query: 74  ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-----VALMMRFLSHCSVNANMYIP 128
           +  +  K A+ + +A+   + I+I    D DG  +      A+  +F+     + +    
Sbjct: 221 LWPEMRKLAKIVRRAVLTQQPIIIRHHADADGICAAVSVETAV-TQFIRDNGGDPD---Q 276

Query: 129 DRIVDGYGPNPSLMEK----------------FINEGAQLIITVDCGSTSYDA--LQYAT 170
           D  +    P+ +   +                   +   LI+ +D GST  D    +   
Sbjct: 277 DNFLLRRSPSKAPFYEIEDVTRDLDMMLKDNVRFGQKLPLILLMDNGSTEEDMPSYKMTE 336

Query: 171 NQGIDVIVIDHHQVKSEEIPAYA-LVNPNRLDDLS 204
             G+DVIV DHH             VNP  +    
Sbjct: 337 VYGLDVIVADHHHPDDTIDKYLLSHVNPYHVGGDF 371


>gi|154151128|ref|YP_001404746.1| phosphoesterase domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|153999680|gb|ABS56103.1| phosphoesterase, RecJ domain protein [Methanoregula boonei 6A8]
          Length = 611

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 73  LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VAL---MMRFLSHCSVNA--NMY 126
            ++ +  K A+ I +A++ ++ I++    D DG  S VA+   ++  +     +   + Y
Sbjct: 220 SLMPEMRKVAKIIRRAVFTAQPIILRHHADADGICSAVAIEQAVVSLIRESGGDFDADYY 279

Query: 127 IPDR---IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDA--LQYATNQG 173
           +  R       Y       +            +   L+I  D GST  D    + A+   
Sbjct: 280 LFKRAPSKAPFYEIEDITRDLDFALKDHARFGQKMPLVILTDNGSTEEDEPSYKIASVYE 339

Query: 174 IDVIVIDHHQVKSEEIPAYA-LVNPNRLDDLS 204
           I  +VIDHH   +         VNP  +    
Sbjct: 340 IPFVVIDHHHPDATIDKYLVGHVNPYHVGGDF 371


>gi|95929624|ref|ZP_01312366.1| phosphoesterase, RecJ-like [Desulfuromonas acetoxidans DSM 684]
 gi|95134321|gb|EAT15978.1| phosphoesterase, RecJ-like [Desulfuromonas acetoxidans DSM 684]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 86  VQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMY----IPDRIVDGYGPNP 139
           V A+ + ++ +I      D D  +S   +   L     +   Y    +PD+     G + 
Sbjct: 11  VDALASGQRFLIAAHEGPDGDAMSSTLALTNALREMGKDVVAYNVDGVPDKFCFLPGADT 70

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
            + E   +E   +I+ +D G      L         +I IDHH    +    Y + +   
Sbjct: 71  VVSEIAASEHFDVIVILDAGELRRARLDARNLC-TTLINIDHHPFSEDFGDIYLVDDKCS 129

Query: 200 LDDLSGQGHLCAAGVVFLVLVLIY 223
                    L A        V + 
Sbjct: 130 ATAAMLYRVLMACDYTISTEVALC 153


>gi|256810870|ref|YP_003128239.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794070|gb|ACV24739.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens
           AG86]
          Length = 431

 Score = 41.7 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 63/453 (13%), Positives = 136/453 (30%), Gaps = 78/453 (17%)

Query: 73  LILTDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
             L + +K  + I + I N    I +   +D DG +S  ++ + L   +   ++ +   +
Sbjct: 2   EKLNEIEKVTKAIKEKILNHTGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV---V 58

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191
                     + K       L I  D GS   + +       I +         S     
Sbjct: 59  EHLSKEVIEKLAKENEVNRPLFIFADMGSGQIEDIIKHDFNAIILDHHPPVVKDSFVNEN 118

Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251
              +NP+          + A+GV +LV                 F    L  L     + 
Sbjct: 119 IIQLNPHIFGIDGA-REITASGVCYLV--------------AREFGYYDLSVLAIAGIIG 163

Query: 252 DVV--PLIGLNRAYVVKGLMVARRQ------GNPGLKALIERVNISSPITAENLGYMI-- 301
           D+   PL+GLN+  V +       +       N     + + +   +      L   +  
Sbjct: 164 DMQYNPLLGLNKFIVNEAREYRYIKIISDIIYNIYNVEIYKAIAYCTKPYIPELASEVKA 223

Query: 302 --------------------GPSINAGGRIGESN----LGSRLLISDDSQELEMLAMKLD 337
                                  + +            +  R LI    ++  +L+  L+
Sbjct: 224 FKFLKEIGIDPNKKELDEADRKKLLSAIIFKYPKIENLIIDRYLIEHKVKDAFLLSEMLN 283

Query: 338 VL---------------NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382
            +               +     + + +L + +  ++ +  +++   +  +       G+
Sbjct: 284 AVGRNGLFAVGIGICLEDDECIKIGNEVLWEYKKNLVNELKNVKLKKLNNIYYFEGKKGM 343

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFDIGKMVSFAVEEGILVKG 437
           +G++A+ L E            E      S R  +     G ++   ++ A E G    G
Sbjct: 344 IGVIASILVE---DKPVIGYHIEGDIAKFSARGNKELVNRGLNLSVAMAVAKEFGG--NG 398

Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470
           GGH +A+G  V +           +     +  
Sbjct: 399 GGHNVASGAVVPKDKVKEFLKRVDEIIGEQLSK 431


>gi|156937507|ref|YP_001435303.1| hypothetical protein Igni_0714 [Ignicoccus hospitalis KIN4/I]
 gi|156566491|gb|ABU81896.1| hypothetical protein Igni_0714 [Ignicoccus hospitalis KIN4/I]
          Length = 128

 Score = 41.7 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 32/128 (25%)

Query: 16  FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI--------DYAKDFLNPSIRL 67
           ++WV L  +E +     I  K             R++          +     +    + 
Sbjct: 13  YKWVELPREEALKLLEIIEGKLGKSP--------RDLQETMRYLRHFEEFYRDMQKRFKD 64

Query: 68  LMPDPLILTDCDKA---ARRIVQAIYNSEKIM-IFGDYD----VDGAASVALMMRFLSHC 119
            +  P  L D  +      +I      +E+I  I   +D    VD      L+   L   
Sbjct: 65  FIAPPHSLDDMIRGIVVVDKIALKKEGNEEIATIV--FDRRISVD------LLKEALKEL 116

Query: 120 SVNANMYI 127
                + +
Sbjct: 117 GYEVEVEV 124


>gi|84489981|ref|YP_448213.1| hypothetical protein Msp_1189 [Methanosphaera stadtmanae DSM 3091]
 gi|84373300|gb|ABC57570.1| RecJ [Methanosphaera stadtmanae DSM 3091]
          Length = 477

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 19/111 (17%)

Query: 76  TDCD----KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131
              D    KA  +I+ A    E I +F   D DG  + +++        ++ ++   D  
Sbjct: 16  KHMDLLFSKAKDKILDA----EDITVFTHTDCDGITAGSILSSIFDKLEIDHSVNFVD-- 69

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
                       + +     L I  D G+          N    VIV+DHH
Sbjct: 70  --------INEVENLTTDTDLTIISDLGAGQN-VSNICDNSNKSVIVLDHH 111


>gi|11498935|ref|NP_070166.1| hypothetical protein AF1337 [Archaeoglobus fulgidus DSM 4304]
 gi|2649241|gb|AAB89907.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 692

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 24/187 (12%)

Query: 50  RNVSIDYAKDFLNPSIRLLMPDPLILT----DCDKAARRIVQAIYNSEKIMIFGDYDVDG 105
           R       +    P  R  + +  +L     D  K A+ + +AIY S  ++I   +D DG
Sbjct: 287 RKRVEAEIERACEPDFRGFLIESEVLEALKEDMLKVAKELKKAIYESRPVIIRHHWDADG 346

Query: 106 AASVALMMRFLSHCSVNAN-------MYIPDRIVD--GYGPNPSLME--------KFINE 148
                 + + L+      +         +  R+     Y     + +        +   +
Sbjct: 347 TCGGVALEKALTDLVERVHSDSEAKYYLVKRRVSRAPFYELEDVVRDLDESLEDAERHGD 406

Query: 149 GAQLIITVDCGSTSYDALQYATNQ--GIDVIVIDHHQV-KSEEIPAYALVNPNRLDDLSG 205
              L++ VD GS   D          G DVI IDHH   +  +      VNP ++   S 
Sbjct: 407 KIPLVVLVDNGSGLEDVPAIRQFLLFGADVITIDHHFPDEEVDSYLLYHVNPYKVGGDSN 466

Query: 206 QGHLCAA 212
                  
Sbjct: 467 YTSGVLC 473


>gi|284166935|ref|YP_003405214.1| phosphoesterase RecJ domain protein [Haloterrigena turkmenica DSM
           5511]
 gi|284016590|gb|ADB62541.1| phosphoesterase RecJ domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 500

 Score = 41.3 bits (95), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 94  KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153
           ++++    D DG  S A+  + L          IP   V     +   +          +
Sbjct: 24  RVLLASHIDADGLTSAAIAAQALER------AAIPFETVFEKQLDQDAIADIAATDYDTV 77

Query: 154 ITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
           +  D GS   + +    + G    ++ DHHQ    +   +       +D  S       A
Sbjct: 78  LFTDFGSGQLEIIGEHEDAGAFTPVIADHHQPADRDTEFHLNPLLFGIDGASEL---SGA 134

Query: 213 GVVFLVLVLIY 223
           G  +++   + 
Sbjct: 135 GASYVLARALA 145


>gi|291279494|ref|YP_003496329.1| HAD-superfamily hydrolase [Deferribacter desulfuricans SSM1]
 gi|290754196|dbj|BAI80573.1| HAD-superfamily hydrolase [Deferribacter desulfuricans SSM1]
          Length = 308

 Score = 41.3 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588
           +++    +D  T   I F              +G  + V  ++   ++ G    Q ++LD
Sbjct: 27  IKVILMDKDGNTFNGIMFDSNKLKFDP----EKGHIVEVIANIQ--HYNGQ--PQFKILD 78

Query: 589 ASPVEGHH 596
            S VEG +
Sbjct: 79  MSLVEGEN 86


>gi|146165424|ref|XP_001014993.2| hypothetical protein TTHERM_00672160 [Tetrahymena thermophila]
 gi|146145482|gb|EAR94748.2| hypothetical protein TTHERM_00672160 [Tetrahymena thermophila
           SB210]
          Length = 580

 Score = 40.9 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/361 (7%), Positives = 65/361 (18%), Gaps = 18/361 (4%)

Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG----- 159
           G  S  L   FL+   +       + +  G   + +  +      +     + C      
Sbjct: 135 GVCSTCLQGYFLNQIGICQPCTGSNCLTCGSSGSCTTCQNGFYPDSTSGSCLPCNSYGSL 194

Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219
           S +  + Q +      + +  ++          A  +  +                    
Sbjct: 195 SQNCASCQTSNPAKCSICLPFYYADGQGRCRQVAFCDNIQPVGEVCLSCADGYYQDTNGK 254

Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279
             +               +    D          V  I    AY+  GL        P  
Sbjct: 255 CKMCPQFGVARCSSATTIIQCTNDKALTFDKSQCVYKISHCTAYLNTGLCKTCDTSFPFN 314

Query: 280 KALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339
                       I           ++        +   +   I                 
Sbjct: 315 SKGTCIQTCQLAIPNCQTCVNGSDTVAVT----CTLCNAGYFIGPGGTSCISCGDLNHGG 370

Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399
            Q  +         +        D                P + G      +      + 
Sbjct: 371 MQGCQTCVGTPFSCSLCLPGYFLDTGN-------ICKGCTPDLKGTGCQTCQSASTCQTC 423

Query: 400 AISFEEDGKGI--GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
             +    G           +  D+G M         +       +            +  
Sbjct: 424 LTNTFGTGGTCNLCDASCGQCTDLGYMNCKTSCSSNMYYLDNSTICRQCNYNMPGCYQCS 483

Query: 458 D 458
           +
Sbjct: 484 N 484


>gi|116071440|ref|ZP_01468709.1| Exonuclease VII, large subunit [Synechococcus sp. BL107]
 gi|116066845|gb|EAU72602.1| Exonuclease VII, large subunit [Synechococcus sp. BL107]
          Length = 387

 Score = 40.9 bits (94), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N A+  +LE       G   P F      +   + V   HL +T     + ++  
Sbjct: 10  SVGELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-VKKGHLWLTLTD-GTASISG 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L        G  + V G L  N+W       ++ LD  P 
Sbjct: 60  VVWASKLAQLSYRPTDGDG--VTVVGKL--NFWAARASITVQALDIRPS 104


>gi|158564341|sp|Q3AH76|EX7L_SYNSC RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName:
           Full=Exodeoxyribonuclease VII large subunit;
           Short=Exonuclease VII large subunit
          Length = 387

 Score = 40.9 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + + +N A+  +LE       G   P F      +   + +   HL +T     S ++  
Sbjct: 10  SVAELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLTD-GSASISG 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L        G  + V G L  N+W       ++ LD  P 
Sbjct: 60  VVWASKLAQLS--YQPKDGDGVTVVGKL--NFWAARASLTVQALDIRPS 104


>gi|148240529|ref|YP_001225916.1| exonuclease VII large subunit [Synechococcus sp. WH 7803]
 gi|147849068|emb|CAK24619.1| Exonuclease VII large subunit [Synechococcus sp. WH 7803]
          Length = 383

 Score = 40.9 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N ++  +LE       G   P F      L+    +   HL +T    D  ++  
Sbjct: 10  SVQELNASVGALLER------GF-APRFLVHGSALRPQ--IKKGHLWLTLSDGD-ASITV 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L     +  G  + V G L  N+W       ++ +D  P 
Sbjct: 60  VCWASRLKQLNFVPTEGEG--VTVVGKL--NFWSARASLAVQAIDLRPS 104


>gi|78213832|ref|YP_382611.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CC9605]
 gi|78198291|gb|ABB36056.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. CC9605]
          Length = 399

 Score = 40.9 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + + +N A+  +LE       G   P F      +   + +   HL +T     S ++  
Sbjct: 22  SVAELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLTD-GSASISG 71

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L        G  + V G L  N+W       ++ LD  P 
Sbjct: 72  VVWASKLAQLS--YQPKDGDGVTVVGKL--NFWAARASLTVQALDIRPS 116


>gi|11497695|ref|NP_068916.1| hypothetical protein AF0075 [Archaeoglobus fulgidus DSM 4304]
 gi|2650572|gb|AAB91152.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 413

 Score = 40.9 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 68  LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127
           L  +       ++AA  I    Y    + +    D DG  S AL+ +   +C   A +  
Sbjct: 8   LHQEFFEW--VERAANYIRS--YAGGGVTVVHHNDADGLCSGALLKKLCEYCGFEAELIC 63

Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
              I   Y   P+++EK  +    +II  D G  + D +         V++IDHH  K  
Sbjct: 64  ---IEKVY---PAVVEKIHSSRDGMIIYTDLGGLAADMIDKINAGKSMVLIIDHHPAKDI 117

Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223
           +     +++P     +SG   + A+ + ++    + 
Sbjct: 118 DSDYVHVLDPELAG-ISGDVFVSASSLNYIFFRAVA 152


>gi|159902646|ref|YP_001549990.1| exodeoxyribonuclease VII [Prochlorococcus marinus str. MIT 9211]
 gi|159887822|gb|ABX08036.1| Exodeoxyribonuclease VII [Prochlorococcus marinus str. MIT 9211]
          Length = 382

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N A+  +L        G   P F   +  +   + +   HL +T       ++ A
Sbjct: 10  SVQELNHAIGHLLSR------GFS-PRFYL-HATVSKSQ-LKNGHLWLTLTD-GHASISA 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +               G  + + G L  N+W       +++++  P 
Sbjct: 60  VIWASTLKKFTYRPNDQDG--IEILGKL--NFWENRANLVVQIIEMRPS 104


>gi|148642320|ref|YP_001272833.1| RecJ-like exonuclease [Methanobrevibacter smithii ATCC 35061]
 gi|148551337|gb|ABQ86465.1| archaea-specific RecJ-like exonuclease [Methanobrevibacter smithii
           ATCC 35061]
          Length = 752

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 29/178 (16%)

Query: 35  QKHAIPDIVARVLVNRNVSIDYAKDFLNPS--IRLLMPDPLILTDCDKAARRIVQAIYNS 92
           +K  + D++   L  R  +     DFL  S  +  L P         +AA++I +AI + 
Sbjct: 308 KKAKLHDLIEDALNKR--AEPDDVDFLVKSDVLNRLKPK------MREAAQKIRRAILDG 359

Query: 93  EKIMIFGDYDVDGAASVALMMRFL----SHCSV--NANMYIPDR---IVDGYGPNPSLME 143
             I++    D DG  S   M + +       +   +A  Y   R       Y     + +
Sbjct: 360 RSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRSPSKAPFYELEDVVKD 419

Query: 144 --------KFINEGAQLIITVDCGSTSYDAL--QYATNQGIDVIVIDHHQVKSEEIPA 191
                   +   +   LI+ +D GST  D +    A    ++V+VIDHH         
Sbjct: 420 LSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKE 477


>gi|150021403|ref|YP_001306757.1| phosphoesterase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793924|gb|ABR31372.1| phosphoesterase, RecJ domain protein [Thermosipho melanesiensis
           BI429]
          Length = 326

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 11/120 (9%)

Query: 85  IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVD----G 134
           IV  +  ++KI++ G    D D  +SV  +   L           +  IP    +     
Sbjct: 8   IVGTLNEAQKILVVGHIMPDGDDISSVLSLFLGLKSLGKQVVAAIDWKIPSYFFEIEEVK 67

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
           Y  N   ++   +    +I+ +D  S               VIVIDHH   +       +
Sbjct: 68  YIKNYEEID-VYDFNPDIIVILDASSPDRVGRFSDVLNDFKVIVIDHHATNTYFGDINWV 126


>gi|116073872|ref|ZP_01471134.1| Exonuclease VII, large subunit [Synechococcus sp. RS9916]
 gi|116069177|gb|EAU74929.1| Exonuclease VII, large subunit [Synechococcus sp. RS9916]
          Length = 389

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 16/110 (14%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV-VNLAHLQMTFESQDSETLQ 542
           +   +N A+  +LE       G   P F     +  + +  V   HL +T    +  ++ 
Sbjct: 10  SVRELNTAIGSLLER------GF-APRFL---VQATASKPQVKKGHLWITLTDGE-ASIT 58

Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           A+A+      L        G  + V G L  N+W       ++VLD  P 
Sbjct: 59  AVAWASKLKQLDYVPADGEG--VTVVGKL--NFWAARATLAVQVLDLRPS 104


>gi|78183946|ref|YP_376381.1| exonuclease VII, large subunit [Synechococcus sp. CC9902]
 gi|123757132|sp|Q3AZZ0|EX7L_SYNS9 RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName:
           Full=Exodeoxyribonuclease VII large subunit;
           Short=Exonuclease VII large subunit
 gi|78168240|gb|ABB25337.1| Exodeoxyribonuclease VII large subunit [Synechococcus sp. CC9902]
          Length = 387

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N A+  +LE       G   P F      +   + V   HL +T     + ++  
Sbjct: 10  SVGELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-VKKGHLWLTLTD-GTASISG 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L        G  + V G L  N+W       ++ LD  P 
Sbjct: 60  VVWASRLAQLSYRPTDGDG--VTVVGKL--NFWAARASITVQALDIRPS 104


>gi|88807160|ref|ZP_01122672.1| Exonuclease VII, large subunit [Synechococcus sp. WH 7805]
 gi|88788374|gb|EAR19529.1| Exonuclease VII, large subunit [Synechococcus sp. WH 7805]
          Length = 382

 Score = 40.5 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           +   +N ++  +LE       G   P F      L+    +   HL +T    +  ++  
Sbjct: 10  SVQELNASVGALLER------GF-APRFLVHGSALRPQ--IKKGHLWLTLSDGN-ASITV 59

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L     +  G  + V G L  N+W       ++ +D  P 
Sbjct: 60  VCWASRLQQLNFVPAEGEG--VTVVGKL--NFWATRASLAIQAIDLRPS 104


>gi|16082593|ref|NP_394590.1| single-stranded DNA-specific exonuclease [Thermoplasma acidophilum
           DSM 1728]
          Length = 446

 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 16/156 (10%)

Query: 96  MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155
            +   YD DG +S  ++   L   +         R    Y    +             I 
Sbjct: 28  RVIVHYDGDGTSSAIILTNMLKRLNK--------RFHLSYIKELNETGFRSLITDDTTIV 79

Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH-LCAAGV 214
            D GS           +  ++IV+DHH     +      +N N  D      H  C + +
Sbjct: 80  ADAGS----DQLRFVPEKKNIIVLDHHFYTKADWKG---MNINARDYGIDGTHEACGSTM 132

Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250
            +++ +++           ++  +    DL  ++ +
Sbjct: 133 SYMMALVMDEKNSDLFPFFMSGLIADKQDLGGISGM 168


>gi|315607829|ref|ZP_07882822.1| DHH family phosphoesterase [Prevotella buccae ATCC 33574]
 gi|315250298|gb|EFU30294.1| DHH family phosphoesterase [Prevotella buccae ATCC 33574]
          Length = 346

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVD------ 133
           A  + + I  SE+I+I G    DG A   +L    +L     + ++ +PD + D      
Sbjct: 11  AATLRELIAASERIVICGHKSPDGDAIGSSLGWAAYLRSLGKSPDIVMPDAMPDFLHWLP 70

Query: 134 GYGPNPSLMEKFIN-----EGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVKS 186
                    ++        + A L+  +D        D            ++IDHH   +
Sbjct: 71  NSEKVVRHDKRTAEVSRMLQQADLLFCLDFNDPGRVEDMQADVVASPARKVMIDHHLDPN 130

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+ +P              + +VF V+  +      D +         + D   
Sbjct: 131 FPDTALAVSHPEM---------SSTSEMVFRVVWQLGGFEGLDRQWAAPIYCGMMTDTGG 181

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
                    +  +    + KG+   +   N         V +   +  + L        +
Sbjct: 182 FTYNSTNPEIYFIISQLLTKGIDKDKIYRNVFNNYSSWAVRLRGYMMCQKLNVFEDLHAS 241

Query: 307 AGGRIGESNLGSRLLISD 324
                         +  D
Sbjct: 242 YYAMTRTELRDFHFIRGD 259


>gi|288924809|ref|ZP_06418746.1| DHH subfamily 1 protein [Prevotella buccae D17]
 gi|288338596|gb|EFC76945.1| DHH subfamily 1 protein [Prevotella buccae D17]
          Length = 346

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVD------ 133
           A  + + I  SE+I+I G    DG A   +L    +L     + ++ +PD + D      
Sbjct: 11  AATLRELIAASERIVICGHKSPDGDAIGSSLGWAAYLRSLGKSPDIVMPDAMPDFLHWLP 70

Query: 134 GYGPNPSLMEKFIN-----EGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVKS 186
                    ++        + A L+  +D        D            ++IDHH   +
Sbjct: 71  NSEKVVRHDKRTAEVSRMLQQADLLFCLDFNDPGRVEDMQADVVASPARKVMIDHHLDPN 130

Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246
               A A+ +P              + +VF V+  +      D +         + D   
Sbjct: 131 FPDTALAVSHPEM---------SSTSEMVFRVVWQLGGFDGLDRQWAAPIYCGMMTDTGG 181

Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306
                    +  +    + KG+   +   N         V +   +  + L        +
Sbjct: 182 FTYNSTNPEIYFIISQLLTKGIDKDKIYRNVFNNYSSWAVRLRGYMMCQKLNVFEDLHAS 241

Query: 307 AGGRIGESNLGSRLLISD 324
                         +  D
Sbjct: 242 YYAMTRTELRDFHFIRGD 259


>gi|126178379|ref|YP_001046344.1| phosphoesterase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125861173|gb|ABN56362.1| phosphoesterase, RecJ domain protein [Methanoculleus marisnigri
           JR1]
          Length = 405

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 35/189 (18%)

Query: 88  AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147
            +   E + +   +D DG A+ +++   +        + I                    
Sbjct: 13  HLLEQEFVEVLAHHDADGIAAASILCHAMFREGGRFRLRI------------------RP 54

Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207
             +   +  D      D     T+   DV+V+DHH              P    D     
Sbjct: 55  GISTADLPGDGSVLLCDFGSALTDLPGDVMVVDHHL-------------PRFEGDYHVNP 101

Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267
           HL        +       L          D   L  L  L  + D   L G NR  V +G
Sbjct: 102 HLAGIDGDRDISAAGAAYL----VAQRMGDNRDLAGLALLGIIGDDQALDGPNREIVNEG 157

Query: 268 LMVARRQGN 276
           +        
Sbjct: 158 IANGFIAPR 166


>gi|220927912|ref|YP_002504821.1| phosphoesterase RecJ domain protein [Clostridium cellulolyticum
           H10]
 gi|219998240|gb|ACL74841.1| phosphoesterase RecJ domain protein [Clostridium cellulolyticum
           H10]
          Length = 320

 Score = 40.1 bits (92), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMY----IPDRI 131
            +K    +++AI  +E I IF     DG A   +L +   L        +Y    IPD  
Sbjct: 1   MEKG---LIKAIETAESIAIFPHTSADGDAIGSSLALALALKKTGKKVIVYMEESIPDTY 57

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCG 159
               G   ++     ++   L I +D G
Sbjct: 58  KFLPGSELAVFISENDDIMGLNIALDTG 85


>gi|222444500|ref|ZP_03607015.1| hypothetical protein METSMIALI_00112 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434065|gb|EEE41230.1| hypothetical protein METSMIALI_00112 [Methanobrevibacter smithii
           DSM 2375]
          Length = 752

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL----SHCSV--NANMYIPDR- 130
             +AA++I +AI +   I++    D DG  S   M + +       +   +A  Y   R 
Sbjct: 345 MREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRS 404

Query: 131 --IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDAL--QYATNQGIDVIV 178
                 Y     + +        +   +   LI+ +D GST  D +    A    ++V+V
Sbjct: 405 PSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVV 464

Query: 179 IDHHQVKSEEIPA 191
           IDHH         
Sbjct: 465 IDHHSPGDLITKE 477


>gi|169343354|ref|ZP_02864358.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens C str. JGS1495]
 gi|169298440|gb|EDS80526.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens C str. JGS1495]
          Length = 330

 Score = 40.1 bits (92), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E+          + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEYEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|296132890|ref|YP_003640137.1| phosphoesterase RecJ domain protein [Thermincola sp. JR]
 gi|296031468|gb|ADG82236.1| phosphoesterase RecJ domain protein [Thermincola potens JR]
          Length = 326

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 85  IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
           + +AI  ++ I++ G    D D   S   M  FL        M  PD I   YG  P + 
Sbjct: 8   VAEAIRKAKHIIVCGHAMPDGDSIGSTLAMGLFLKSMDKKVTMLTPDPIPQIYGFLPLVQ 67

Query: 143 EKFINEGAQ----LIITVDCGSTSYDALQYATNQGIDVIV--IDHHQVKSEE 188
           E    E         + +DC   +      A       ++  IDHH      
Sbjct: 68  EIKPPEEFPDDADTAVILDCTDLNRVGAYLAERLKKVPVLINIDHHISNQVY 119


>gi|330509083|ref|YP_004385511.1| hypothetical protein MCON_3466 [Methanosaeta concilii GP-6]
 gi|328929891|gb|AEB69693.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 718

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAA-SVALMMRFLSHC----SVNANMYIPDR-- 130
               A+ I +A+  S  I++    D DG + +VA+ M  L         +A  +   R  
Sbjct: 321 MKAVAKEIRRAVLKSRPIVVRHHADADGISAAVAIEMAILPLIAEVSGPDAEYHNYRRAP 380

Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179
                Y       +            +   LI+ +D GST  D  A++ A   G++++V+
Sbjct: 381 SKAPFYELEDVTKDLTFALEDQSRHGQKMPLIVLMDNGSTEEDVPAMRQAQVYGLEMLVV 440

Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP 233
           DHH    + +  + + + N        G         +  ++   +  +    P
Sbjct: 441 DHH-HPHKIVDQFLVAHVNPAHAGGDFGLTTGMLATEIARMIHPEVENKIRHFP 493


>gi|255323577|ref|ZP_05364707.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae
           RM3277]
 gi|255299291|gb|EET78578.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae
           RM3277]
          Length = 38

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
             G+ + +   +  N +RG    QL V + 
Sbjct: 8   HAGESIDLVFSVSKNSFRGLVTPQLLVKEI 37


>gi|254431781|ref|ZP_05045484.1| exodeoxyribonuclease VII, large subunit [Cyanobium sp. PCC 7001]
 gi|197626234|gb|EDY38793.1| exodeoxyribonuclease VII, large subunit [Cyanobium sp. PCC 7001]
          Length = 407

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + S++N AL  ++E       G   P F   +  +   + +   HL MT   +   ++ A
Sbjct: 28  SVSSLNAALGSLMER------GF-APRFLL-DATVSRPQ-LKKGHLWMTLVDEQ-ASISA 77

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L   +  + G  + V G L  N+W       ++VLD  P 
Sbjct: 78  VVWASQRQKLS--MEPAEGDGVVVVGKL--NFWAARASLCVQVLDLRPS 122


>gi|283852150|ref|ZP_06369424.1| biotin and thiamin synthesis associated [Desulfovibrio sp.
          FW1012B]
 gi|283572540|gb|EFC20526.1| biotin and thiamin synthesis associated [Desulfovibrio sp.
          FW1012B]
          Length = 478

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
          +  I+A+ L  + ++ +     L         DP +L     AARR+ +AIY  ++I++F
Sbjct: 35 VSGIIAKALEYKGLTAEEVAVLLEVE------DPALLEAMYAAARRVKEAIY-GKRIVLF 87

Query: 99 G 99
           
Sbjct: 88 A 88


>gi|119944389|ref|YP_942069.1| KpsF/GutQ family protein [Psychromonas ingrahamii 37]
 gi|119862993|gb|ABM02470.1| KpsF/GutQ family protein [Psychromonas ingrahamii 37]
          Length = 319

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 506 NPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAI 544
           N +P F  PN +L     ++   H++    S+D + L  I
Sbjct: 275 NSSPCFISPNARLTEAEELMREKHIKWLVVSEDGKKLDGI 314


>gi|304314917|ref|YP_003850064.1| archaea-specific RecJ-like exonuclease [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588376|gb|ADL58751.1| predicted archaea-specific RecJ-like exonuclease
           [Methanothermobacter marburgensis str. Marburg]
          Length = 725

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 23/161 (14%)

Query: 49  NRNVSIDYAKDFLNPSIRLLMPDPLIL----TDCDKAARRIVQAIYNSEKIMIFGDYDVD 104
            R +  +       P  + L+ +   L        +AA+ I +AIY+   I++    D D
Sbjct: 296 ARRLIDEAIDRRAEPKRKDLLIESETLEKLRPKLIEAAKAIRRAIYDGRSILVRHHADAD 355

Query: 105 GAAS-VAL---MMRFLSHCSV--NANMYIPDR---IVDGYGPNPSLME--------KFIN 147
           G  + VA+   ++  L   +   +A  +   R       Y     + +        +   
Sbjct: 356 GICAGVAIEKAVVPLLRELNPSTDAEWHYFKRAPSKAPFYELEDVVKDLSYALEDLERHG 415

Query: 148 EGAQLIITVDCGSTSYDALQYATNQ--GIDVIVIDHHQVKS 186
           +   L++ +D GST  D L     +   I+++V+DHH    
Sbjct: 416 QKLPLLVLLDNGSTEEDILALMKAKIYDIEIVVVDHHYPGE 456


>gi|309799909|ref|ZP_07694113.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
          infantis SK1302]
 gi|308116436|gb|EFO53908.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus
          infantis SK1302]
          Length = 53

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID 55
          + W      E       I +K  +   VAR+L  R +  +
Sbjct: 9  YNWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIKDE 47


>gi|89890862|ref|ZP_01202371.1| phosphoesterase, DHH family [Flavobacteria bacterium BBFL7]
 gi|89517007|gb|EAS19665.1| phosphoesterase, DHH family [Flavobacteria bacterium BBFL7]
          Length = 341

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 10/153 (6%)

Query: 78  CDKA-ARRIVQAIYNSEKIMIFGDYDVDG--AASVALMMRFLSHCSVNANMYIPDRIVDG 134
            + A  + +   +   +KI+I    + DG    S   +  +L     +  +  P+   D 
Sbjct: 1   MNTAQIQELKNHLSTPQKIVIVPHRNPDGDAIGSTTALYGYLKQLGHHCTIISPNDYPDF 60

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
               P   E  + E  + I   D      D +                 + +       +
Sbjct: 61  LKWMPFTDEIMVYEKQKTI--ADSLIQDADFIFILDQNAFHRAGDMETILTATNTTYVMI 118

Query: 195 VNPNRLDDLSGQGH-----LCAAGVVFLVLVLI 222
            +  + DD +   +          +++  + ++
Sbjct: 119 DHHQQPDDFATYMYSDTSMSSTCEMIYHFIDMM 151


>gi|307297767|ref|ZP_07577573.1| phosphoesterase RecJ domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917027|gb|EFN47409.1| phosphoesterase RecJ domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 328

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRI 131
             +    IV  I  +  I++ G    D D  +SV  +   L           +  IP   
Sbjct: 1   MIRKITSIVSCIQKANDILVVGHIMPDGDCISSVVSLSMGLEKFGKKVTPAIDWKIPANF 60

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSY-DALQYATNQGIDVIVIDHHQVKSEEIP 190
                 +             LII VD  S       +    +GI  +VIDHH   +    
Sbjct: 61  TVFPWIDRIKDFSNDVVEPNLIIIVDASSPDRIGRFEQLLRKGIPSVVIDHHATNTYFAD 120

Query: 191 AYAL 194
              +
Sbjct: 121 DCWV 124


>gi|254166918|ref|ZP_04873772.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei
           T469]
 gi|289596529|ref|YP_003483225.1| metallophosphoesterase [Aciduliprofundum boonei T469]
 gi|197624528|gb|EDY37089.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei
           T469]
 gi|289534316|gb|ADD08663.1| metallophosphoesterase [Aciduliprofundum boonei T469]
          Length = 423

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 67  LLMPDPLILTDCD---KAARRIVQAIYNSEKI-MIFGDYDVDGAASVALM 112
            L  +P  + D +   +A   +  A+    +I  I+G +D   A S AL+
Sbjct: 48  DLFHNP--IPDMEIVRRAVEILKNAVDRGIRIYAIYGSHDF-SAGSTALL 94


>gi|260435825|ref|ZP_05789795.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 8109]
 gi|260413699|gb|EEX06995.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 8109]
          Length = 387

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 16/110 (14%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + + +N A+  +LE       G   P F      +   + +   HL +T     +     
Sbjct: 10  SVAELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLTDGSASISSV 60

Query: 544 IAFRVYGTPLGEFLMQSR-GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           +      + L +   Q + G  + V G L  N+W       ++ LD  P 
Sbjct: 61  VW----ASKLAQLSYQPKDGDGVTVVGKL--NFWAARASLTVQALDIRPS 104


>gi|124027462|ref|YP_001012782.1| DHH family phosphoesterase [Hyperthermus butylicus DSM 5456]
 gi|123978156|gb|ABM80437.1| predicted phosphoesterase, DHH family [Hyperthermus butylicus DSM
           5456]
          Length = 355

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY- 135
           +KA   +  A      I++ G    D D  A+  ++   L    ++A + +P+ +     
Sbjct: 19  EKAEELLELAEDAGTPIVVTGHKNADPDALAAAYVIRNILRSRGLDARLVLPEGLSQPSK 78

Query: 136 -------GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188
                  G  P+ +E    E + L + VD  S             +D +VIDHH+     
Sbjct: 79  RVAREILGVEPADVEDEPPEESALAVVVDTASPEQLGRLAEFVLQVDFVVIDHHESNRLA 138

Query: 189 IPAYALVNPN 198
             A   +   
Sbjct: 139 EKAALAIVDT 148


>gi|312137507|ref|YP_004004844.1| phosphoesterase recj domain protein [Methanothermus fervidus DSM
           2088]
 gi|311225226|gb|ADP78082.1| phosphoesterase RecJ domain protein [Methanothermus fervidus DSM
           2088]
          Length = 455

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 86  VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122
            + I  +E + I+   D DG  + A++   +     +
Sbjct: 13  KKVIEEAENVNIYTHIDCDGICAGAILSYLMEELGKD 49


>gi|207111474|ref|ZP_03245636.1| single-stranded-DNA specific exonuclease [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 47

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 111 LMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159
           +M +F    +     + IP+R +DGYG +   +EK     A LIITVD G
Sbjct: 1   IMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEK---HHAPLIITVDNG 47


>gi|66392184|ref|NP_001018150.1| DNA (cytosine-5)-methyltransferase 3A [Danio rerio]
 gi|62433265|dbj|BAD95480.1| DNA methyltransferase [Danio rerio]
          Length = 731

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 23/226 (10%)

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149
            N + I +   +  DG  +  L++  L    +    Y+   + +       +  +     
Sbjct: 446 ENRKPIRVLSLF--DGI-ATGLLV--LRELGIQVERYVASEVCEDSITVGIVRHQGRIMY 500

Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209
                           L     Q      +    +        ++VNP R        + 
Sbjct: 501 ----------VGDVRQLTRKNIQEWGPFDL---VIGGSPCNDLSIVNPARKG-----LYE 542

Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
               + F    L++    ++      F L   +  + ++   D+   +  N   +    +
Sbjct: 543 GTGRLFFEFYRLLHEARPKEGDTRPFFWLFENVVAMGVSDKRDISRFLECNPVMIDAKEV 602

Query: 270 VARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315
            A  +       L       S +  + L            + G+  
Sbjct: 603 SAAHRARYFWGNLPGMNRPMSAMCTDKLDLQDCLEHGRTAKFGKVR 648


>gi|257064368|ref|YP_003144040.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792021|gb|ACV22691.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 327

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 34/196 (17%)

Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430
           +    ++    +V +    L + F   + A + E+ G G        G D   + +  ++
Sbjct: 1   MDFTSNKRPDDMVRITTPELADAFIEEAVAYTREQVGDGKVLLALSGGVDSSVVAALLIK 60

Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490
                     A+   L    VN G +     +    +    +   +  +D          
Sbjct: 61  ----------AIGKQLVCVHVNHGLMRKGESEQVIEVFQNQMDANLIYVDA-------TD 103

Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550
             +D+L      G  +P               ++    +++    +++  L  I F   G
Sbjct: 104 RFLDLLA-----GQADPE----------TKRHIIGEEFIKVF--DEEAAKLDGIGFLGQG 146

Query: 551 TPLGEFLMQSRGKRMH 566
           T   + L    G + H
Sbjct: 147 TIYPDILESEAGVKAH 162


>gi|261350952|ref|ZP_05976369.1| ribosomal protein, member of s1p family [Methanobrevibacter smithii
           DSM 2374]
 gi|288860292|gb|EFC92590.1| ribosomal protein, member of s1p family [Methanobrevibacter smithii
           DSM 2374]
          Length = 752

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL----SHCSV--NANMYIPDR- 130
             +AA++I +AI +   I++    D DG  S   M + +       +   +A  Y   R 
Sbjct: 345 MREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRS 404

Query: 131 --IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDAL--QYATNQGIDVIV 178
                 Y     + +        +   +   LI+ +D GST  D +    A    ++V+V
Sbjct: 405 PSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVV 464

Query: 179 IDHHQVKSEEIPA 191
           IDHH         
Sbjct: 465 IDHHFPGDLITKE 477


>gi|289643642|ref|ZP_06475755.1| phosphoesterase RecJ domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506533|gb|EFD27519.1| phosphoesterase RecJ domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 363

 Score = 39.0 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 79  DKAARRIVQAIYNSEKIMIFGDYDVDGAA-SVAL-MMRFLSHCSVNAN-------MYIPD 129
           ++A   I+ A+   E I++    D DG +   A+ +   L      A+         +P 
Sbjct: 38  NRAVEAILSAVQGGESILLVAHVDPDGDSLGSAIALGLALRTLGSRASVSFDSDPFVVPR 97

Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCG-STSYDALQYATNQGIDVIVIDHHQVKSEE 188
            +    G +  +    +     L++T+D G      AL     +   ++VIDHH   +  
Sbjct: 98  SLTFLPGQDLLVPPALVPATPDLVVTLDAGSLGRLGALGRVATRARRMVVIDHHASNTRF 157

Query: 189 IPAYAL 194
                +
Sbjct: 158 GDINVI 163


>gi|297192947|ref|ZP_06910345.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722649|gb|EDY66557.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 252

 Score = 39.0 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 11  CSISGFRWVSLLGQEGINRALAIT--QKHAIP-DIVARVLVNRNVSIDYA--KDFLNPSI 65
            S SG R         ++R   I   ++   P + VA +L         A  +  L    
Sbjct: 33  RSGSGHR---RYDDADLDRLQQILFYRELGFPLEEVAALL-----DDPDADPRAHLRRQH 84

Query: 66  RLLMPDPLILTDCDKAARRIVQAIYNS------EKIMIFGDYDVD 104
            LL      L +   A  R ++A          EK  +FGD+D D
Sbjct: 85  ELLSARIARLKEMAAAVERAMEAKKMGINLTPEEKFEVFGDFDPD 129


>gi|110799108|ref|YP_694496.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens ATCC 13124]
 gi|110673755|gb|ABG82742.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens ATCC 13124]
          Length = 323

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 21  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 75

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 76  --VNSWQG--TLQLKVEHASKVT 94


>gi|18309005|ref|NP_560939.1| CMP-binding factor [Clostridium perfringens str. 13]
 gi|18143680|dbj|BAB79729.1| probable CMP-binding factor [Clostridium perfringens str. 13]
          Length = 330

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|182625357|ref|ZP_02953130.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens D str. JGS1721]
 gi|177909354|gb|EDT71806.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens D str. JGS1721]
          Length = 330

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|168214035|ref|ZP_02639660.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens CPE str. F4969]
 gi|170714465|gb|EDT26647.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens CPE str. F4969]
          Length = 330

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|110803547|ref|YP_697372.1| HD domain-containing protein [Clostridium perfringens SM101]
 gi|110684048|gb|ABG87418.1| HD domain protein [Clostridium perfringens SM101]
          Length = 323

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 21  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 75

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 76  --VNSWQG--TLQLKVEHASKVT 94


>gi|168217735|ref|ZP_02643360.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens NCTC 8239]
 gi|182380178|gb|EDT77657.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens NCTC 8239]
          Length = 330

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|168210478|ref|ZP_02636103.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens B str. ATCC
           3626]
 gi|170711407|gb|EDT23589.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens B str. ATCC
           3626]
          Length = 330

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|168206212|ref|ZP_02632217.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens E str. JGS1987]
 gi|170662305|gb|EDT14988.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens E str. JGS1987]
          Length = 330

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570
           F   +  L++       +L +    +  + L  +          E           + G 
Sbjct: 28  FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82

Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593
             VN W+G    QL+V  AS V 
Sbjct: 83  --VNSWQG--TLQLKVEHASKVT 101


>gi|327400231|ref|YP_004341070.1| phosphoesterase RecJ domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327315739|gb|AEA46355.1| phosphoesterase RecJ domain protein [Archaeoglobus veneficus SNP6]
          Length = 434

 Score = 38.6 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 20/122 (16%)

Query: 80  KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN- 138
           KA       I  SE I I+  YD DG              +         R+   +    
Sbjct: 11  KAVEL----IKESEFIHIYTHYDADGI------------SAAAVLASALHRLDKPFQVTF 54

Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198
              + + ++  A LII  D GS   D +        +V+++DHH       P  +LV+ N
Sbjct: 55  LKGLNQGVDCDADLIILADMGSGYPDIVSEI---DANVVIVDHHFPTGRIEPKRSLVHVN 111

Query: 199 RL 200
             
Sbjct: 112 PH 113


>gi|87301423|ref|ZP_01084264.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 5701]
 gi|87284391|gb|EAQ76344.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 5701]
          Length = 400

 Score = 38.6 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543
           + S +N ++  +LE       G   P F      +   + +   HL MT   + + ++ A
Sbjct: 25  SVSDLNRSIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWMTLLDE-TASISA 74

Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592
           + +      L      + G  + V G L  N+W       ++ LD  P 
Sbjct: 75  VVWASALPRLS--FTPADGDGVIVVGKL--NFWGARASLCVQALDVRPS 119


>gi|326204068|ref|ZP_08193929.1| phosphoesterase RecJ domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985835|gb|EGD46670.1| phosphoesterase RecJ domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 320

 Score = 38.6 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 78  CDKAARRIVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMY----IPDRI 131
            DK    +V+A+  +E + IF     DG A   +L +   L        +Y    IPD  
Sbjct: 1   MDK---ELVKAVEGAESVAIFPHISADGDAIGSSLALALALKKTGKKVIVYMEENIPDTF 57

Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCG 159
               G   +       E   L I +D G
Sbjct: 58  KFLPGIELAGFISEDQEVMDLNIALDTG 85


>gi|124088291|ref|XP_001347040.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145474489|ref|XP_001423267.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057429|emb|CAH03413.1| hypothetical protein, transmembrane helices [Paramecium
           tetraurelia]
 gi|124390327|emb|CAK55869.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2954

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 54/259 (20%), Gaps = 17/259 (6%)

Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL--- 217
                   A       +   ++Q              N  D      +  +    +    
Sbjct: 628 CYDCGQYCAKCIQSKCLYCINNQGYFISFDKLNCAICNIKDCQYCFQYYQSDDKYYTTLD 687

Query: 218 ---VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274
               +  I + L +      N ++             +       N      G++     
Sbjct: 688 YEPFMENIQQELIKIGCAQCNQNMY-------FNFQTNQCEEQLNNDVKCSFGIITKDFG 740

Query: 275 GNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332
            +  +K+L   V I     +T       I   IN  G             S  + + +  
Sbjct: 741 KSICIKSLTPLVGIQQTECLTISFCEQCILNYINTDGF--CIKCSDGYYSSITTGQCKQC 798

Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392
            +      Q  +  E       +A      +  +         +        +  +   +
Sbjct: 799 PLTCKTCQQQNKNHEDFWKWDIKAFYKYFVNSNEDHYFEQYGLNFNTKNFEIVCTSCFSD 858

Query: 393 KFGRPSFAISFEEDGKGIG 411
            F   +             
Sbjct: 859 SFLYQNECFKNCGQDCSNC 877


>gi|83942803|ref|ZP_00955264.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp. EE-36]
 gi|83846896|gb|EAP84772.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp. EE-36]
          Length = 511

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
            H+ +  +  DS  +  + +      +   L     + M V     +  + G  + Q+ +
Sbjct: 51  GHIYLDLKD-DSSVISGVIW----KGVSARLETQPEEGMEVIATGRITTFGGQSKYQIVI 105

Query: 587 LDASPV 592
            D  P 
Sbjct: 106 EDIKPA 111


>gi|83955626|ref|ZP_00964206.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83839920|gb|EAP79096.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 515

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586
            H+ +  +  DS  +  + +      +   L     + M V     +  + G  + Q+ +
Sbjct: 75  GHIYLDLKD-DSSVISGVIW----KGVSARLETQPEEGMEVIATGRITTFGGQSKYQIVI 129

Query: 587 LDASPV 592
            D  P 
Sbjct: 130 EDIKPA 135


>gi|212224857|ref|YP_002308093.1| hypothetical protein TON_1706 [Thermococcus onnurineus NA1]
 gi|212009814|gb|ACJ17196.1| Hypothetical protein TON_1706 [Thermococcus onnurineus NA1]
          Length = 311

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 23/155 (14%)

Query: 96  MIFGDYDVDGAASVALMMRFL-----SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150
           +I   +D DG  S AL++R L     ++ + +   +   R  +        + K I    
Sbjct: 3   LIVHHWDTDGITSAALLVRALCLEDFTNMTASIGEF---RFDE-------RIRKAIEGAE 52

Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210
           +L +         + +       I+ + IDHH       P    +NP+   +      L 
Sbjct: 53  KLYVMDFNVPGEVEKV------NIETLFIDHHTQPRIRNPKVKQINPSLDGEYYPSASLV 106

Query: 211 AAGV--VFLVLVLIYRILRQDNKVPLNFDLLSLLD 243
            +    ++     +  +     +      +  LLD
Sbjct: 107 VSEYFGLWNAWSALGVVGDIGERAFEVPRVNELLD 141


>gi|254440339|ref|ZP_05053833.1| hypothetical protein OA307_5209 [Octadecabacter antarcticus 307]
 gi|198255785|gb|EDY80099.1| hypothetical protein OA307_5209 [Octadecabacter antarcticus 307]
          Length = 341

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 27/155 (17%)

Query: 80  KAARRIVQAIY-NSEKIMIFG----------------DYDVDGAASVAL-MMRFLSHCSV 121
           +A  R+  A+      I+IF                 DY VDG  + ++ M   L+    
Sbjct: 83  EALERLSNALQAKGYHILIFTAPNSSDGIESVVRDLMDYQVDGIIAASVSMSSSLAALCA 142

Query: 122 NANMYIP----DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177
            A   IP    +R   G G +                 +D G   +  + +       + 
Sbjct: 143 KAG--IPVVLFNRGQPGSGLSAVTSANVKGGYRATQALIDAG---HSRIAHIAGWNGSLT 197

Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212
             D  Q   + +    L     +D +  +    AA
Sbjct: 198 GTDRQQGFEDAMANAQLTPFAIVDGMYNRDIAAAA 232


>gi|289643700|ref|ZP_06475811.1| ATPase associated with various cellular activities AAA_5 [Frankia
           symbiont of Datisca glomerata]
 gi|289506478|gb|EFD27466.1| ATPase associated with various cellular activities AAA_5 [Frankia
           symbiont of Datisca glomerata]
          Length = 400

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 77  DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           D D+A   +  A+   E +++ G     G A  +L+ RF          Y+  R  +
Sbjct: 30  DRDEAVDLLALAVLCREHVLLVGPP---GTAKSSLLERFRRTLDARCFSYLLTRFTE 83


>gi|313206499|ref|YP_004045676.1| phosphoesterase recj domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445815|gb|ADQ82170.1| phosphoesterase RecJ domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023560|gb|EFT36564.1| hypothetical protein RAYM_07229 [Riemerella anatipestifer RA-YM]
 gi|325336055|gb|ADZ12329.1| Exopolyphosphatase-related protein [Riemerella anatipestifer RA-GD]
          Length = 334

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 10/201 (4%)

Query: 85  IVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142
           I   I    KI+I   Y+ DG A   +L +  FL+  +V   + +P+         P   
Sbjct: 10  IQNLITPDNKIVIITHYNPDGDAIGSSLGLKHFLATLNVETEVIVPNDFPKFLKWMPEAK 69

Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202
           +  I E  +                         IV +             L++ ++  D
Sbjct: 70  KITIAEYKKKKAFELIKDADVIFCLDFNTLSRIGIVGEWVSKSPATK---ILIDHHQQPD 126

Query: 203 LSGQGH-----LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257
                +        + +VF  +  +    + +  +        + D              
Sbjct: 127 AFDFVYSDTSIPATSQMVFHFIEALESTQKLNQSIAECLYTGIMTDTGGFRFRSTSATTH 186

Query: 258 GLNRAYVVKGLMVARRQGNPG 278
            +    +  G   A    N  
Sbjct: 187 RIIAQLIEHGADPANITSNTW 207


>gi|169623839|ref|XP_001805326.1| hypothetical protein SNOG_15163 [Phaeosphaeria nodorum SN15]
 gi|160705055|gb|EAT77388.2| hypothetical protein SNOG_15163 [Phaeosphaeria nodorum SN15]
          Length = 752

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/344 (9%), Positives = 75/344 (21%), Gaps = 17/344 (4%)

Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235
           +       +   E  +  L    + ++        +     ++L+       +      +
Sbjct: 278 IFACSTLMMGDIEEGSKWLALATKHEESFKDVSRLSTMQAMVLLLKAREASPKRGYFWRS 337

Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL--MVARRQGNPGLKALIERVNISSPIT 293
           +     + LVA+A   ++      +R     G        +       LI    I  P  
Sbjct: 338 WMAT--VSLVAMAKDLELHDHYDTHRMGKSCGSTGHDCIAKTRVWQMCLIFEAMIGGPQG 395

Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353
             +             R+      +   I+    +   +A  +         +     + 
Sbjct: 396 RYDYSVDPETVDYDMPRLVPGQDATEFQIARQFVQYTRVAKNVYQTASLYGKLRKKSADW 455

Query: 354 AEAKVL-------TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406
           A +          +         + +V         +          +   S  + F   
Sbjct: 456 ALSPAFLGHNADFSVWLREIPDDMQIVYPQDGTAPWIPSHMIANMHCYHFLSIVMHFRPQ 515

Query: 407 GKGIGSGRSIEG-FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465
              +           +    S A     L +           +  +       +      
Sbjct: 516 LHAVSENYDGTWKQHMMTCYSAAKTMCKLQESILKTYGMPGLLCMLRGISFHIYAVLTCT 575

Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509
            +    IT P   I G           +  +      G   P P
Sbjct: 576 MLHLVAITCPDPDIHG-----DAREFFVRHMRILETCGPHFPMP 614


>gi|145591097|ref|YP_001153099.1| phosphoesterase, DHHA1 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282865|gb|ABP50447.1| phosphoesterase, DHHA1 [Pyrobaculum arsenaticum DSM 13514]
          Length = 321

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 92  SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151
             ++ I    D DG  S AL+   L        +                 +    +   
Sbjct: 2   GRRLTILAHGDADGVCSAALVKAALRDQYSEIQVV----FTHPVDLVKDFQQYARGDVYI 57

Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHH 182
           + + +D  +   +  +     G  V+ IDHH
Sbjct: 58  VDVAIDEKAAQ-EVQKLFRAYGGRVVYIDHH 87


>gi|256028208|ref|ZP_05442042.1| putative cytoplasmic protein [Fusobacterium sp. D11]
 gi|289766140|ref|ZP_06525518.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289717695|gb|EFD81707.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 358

 Score = 37.8 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 21/362 (5%)

Query: 82  ARRIVQAIYNSE---KIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGP 137
           A  +      SE   K++I    D DG  S A++++      + N    I   +      
Sbjct: 2   ADILYDTRLKSEEAPKVIILTHGDADGLVS-AMIVKAFEELQNKNKTFLIMSSMDVTLEQ 60

Query: 138 NPSLMEKFINE----GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
                +             I  +D    S + L+       +VI IDHH   +  +    
Sbjct: 61  TDKTFDYICKYASFGSKDRIYILDRPIPSVEWLKMKYLAYTNVINIDHHLTNNPTMYKDE 120

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
                   D             +L L     ++ +       +    L  L    +  D+
Sbjct: 121 CCC-----DDIYFYWNDKLSAAYLTLEWFKPLIEKSEVYKKMY--EKLEPLAEATSCWDI 173

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
                L  +     L       N   K L      +      N         N    + E
Sbjct: 174 FTWKNLGNSQKELLLKRRALSINSAEKILGAGAFYNFITKKLNSENYTEEIFNYFFLLDE 233

Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             NL    L     + +     K   L     +        A+  +  +  D +  + + 
Sbjct: 234 AYNLKIDNLFDFAKRVISDFDYKGYKLGVIYGIDGDYQSIIADKILFDKKLDYEVVAFLN 293

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG-RSIEGFDIGKMVSFAVEE 431
           V G         +  + + +K       + +   G    SG R  +  ++ K +    E 
Sbjct: 294 VYGTVSFRSKNDIDVSDIAKK---LGMIVGYSGGGHKHASGCRICDRDEMKKKMMEIFEH 350

Query: 432 GI 433
            +
Sbjct: 351 SM 352


>gi|237743727|ref|ZP_04574208.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432758|gb|EEO42970.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 358

 Score = 37.8 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 21/362 (5%)

Query: 82  ARRIVQAIYNSE---KIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGP 137
           A  +      SE   K++I    D DG  S A++++      + N    I   +      
Sbjct: 2   ADILCDTRLKSEEAPKVIILTHGDADGLVS-AMIVKAFEELQNKNKTFLIMSSMDVTLEQ 60

Query: 138 NPSLMEKFINE----GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
                +             I  +D    S + L+       +VI IDHH   +  +    
Sbjct: 61  TDKTFDYICKYASFGSKDRIYILDRPIPSVEWLKMKYLAYTNVINIDHHLTNNPTMYKDE 120

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
                   D             +L L     ++ +       +    L  L    +  D+
Sbjct: 121 CCC-----DDIYFYWNDKLSAAYLTLEWFKPLIEKSEVYKKMY--EKLEPLAEATSCWDI 173

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
                L  +     L       N   K L      +      N         N    + E
Sbjct: 174 FTWKNLGNSQKELLLKRRALSINSAEKILGAGAFYNFITKKLNSENYTEEIFNYFFLLDE 233

Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             NL    L     + +     K   L     +        A+  +  +  D +  + + 
Sbjct: 234 AYNLKIDNLFDFAKRVISDFDYKGYKLGVIYGIDGDYQSIIADKILFDKKLDYEVVAFLN 293

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG-RSIEGFDIGKMVSFAVEE 431
           V G         +  + + +K       + +   G    SG R  +  ++ K +    E 
Sbjct: 294 VYGTVSFRSKNDIDVSDIAKK---LGMIVGYSGGGHKHASGCRICDRDEMKKKMMEIFEH 350

Query: 432 GI 433
            +
Sbjct: 351 SM 352


>gi|167463039|ref|ZP_02328128.1| hypothetical protein Plarl_10827 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 426

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 4/161 (2%)

Query: 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI 174
           +L   S     YIP   + G       + + + +   + IT+D  + +++          
Sbjct: 59  WLRDSSAQVKHYIP---LAGQDKELQQIIEGLIKRQMMYITMDPYANAFNETSNDKRWET 115

Query: 175 DVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL 234
           D+  I +  V   +    +L  P  L  L  +         F     +  ILR       
Sbjct: 116 DLTEI-NPWVWERKYELDSLCYPIELSYLYWKQTGRTGMFDFTYQSALRAILRLIGTEQR 174

Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
           + +              D +   G        G+  +  + 
Sbjct: 175 HGEKSDYRFERTTGLKTDTLRNQGKGMPVNYTGMTWSGFRP 215


>gi|322381410|ref|ZP_08055409.1| hypothetical protein PL1_2255 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154637|gb|EFX46912.1| hypothetical protein PL1_2255 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 444

 Score = 37.8 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 4/161 (2%)

Query: 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI 174
           +L   S     YIP   + G       + + + +   + IT+D  + +++          
Sbjct: 77  WLRDSSAQVKHYIP---LAGQDKELQQIIEGLIKRQMMYITMDPYANAFNETSNDKRWET 133

Query: 175 DVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL 234
           D+  I +  V   +    +L  P  L  L  +         F     +  ILR       
Sbjct: 134 DLTEI-NPWVWERKYELDSLCYPIELSYLYWKQTGRTGMFDFTYQSALRAILRLIGTEQR 192

Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275
           + +              D +   G        G+  +  + 
Sbjct: 193 HGEKSDYRFERTTGLKTDTLRNQGKGMPVNYTGMTWSGFRP 233


>gi|225906902|gb|ACO36239.1| (+)-valencene synthase [Vitis vinifera]
          Length = 556

 Score = 37.8 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 50/459 (10%), Positives = 112/459 (24%), Gaps = 41/459 (8%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKI-----MIFGDY----DVDG----AASVALMMRFLS 117
           +P  L +   A +R+  A +  ++I      I   +    D+DG        AL  R L 
Sbjct: 69  NPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCNDMDGDLYNI---ALGFRLLR 125

Query: 118 HCSVNANMYIPDRIVDG------------YGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
                 +  I ++  D              G         +    + I+      T+   
Sbjct: 126 QQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRVHGEDILAKALAFTTTHL 185

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF--LVLVLIY 223
                + G  +     H +          +       +          ++    +   + 
Sbjct: 186 KAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQDEAFHDKTLLELAKLDFNLV 245

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
           + L ++    L       LD            + G    + V       R      K + 
Sbjct: 246 QSLHKEELSNLARWWKE-LDFATKLPFARDRLVEGYFWMHGVYFEPQYLRGRRILTKVIA 304

Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL---- 339
               +     A      +   I A  R   +++              +   K        
Sbjct: 305 MTSILDDIHDAYGTPEELKLFIEAIERWDINSINQLPEYMKLCYVALLDVYKEIEEEMEK 364

Query: 340 --NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
             NQ R      +++        +   + +  V   E                   F   
Sbjct: 365 EGNQYRVHYAKEVMKNQVRAYFAEAKWLHEEHVPAFEEYMRVALASSGYCLLATTSFVGM 424

Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
               + E         + +   +    +   ++     +  GH +A+ +      +G   
Sbjct: 425 GEIATKEAFDWVTSDPKIMSSSNFITRLMDDIKSHKFEQKRGH-VASAVECYMKQYGVSE 483

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
           +         +         +    L  +AV++ L+  L
Sbjct: 484 EQVYSEFQKQIENAWLDINQEC---LKPTAVSMPLLARL 519


>gi|154248963|ref|YP_001409788.1| phosphoesterase domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152899|gb|ABS60131.1| phosphoesterase RecJ domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 332

 Score = 37.8 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 85  IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPN 138
           IV  +  ++KI++ G    D D  +SV      L           +  IP    +    N
Sbjct: 8   IVAELNKAKKILVVGHIMPDGDDVSSVLSATLGLRKIGKEVLAGIDWRIPWYFQEFEEVN 67

Query: 139 PSLMEKF---INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
             L  +     N    +++ +D  S               V+V+DHH   +       +
Sbjct: 68  EILSYEKIMEANFNPDIVLILDASSPDRVGRFQEFFDNRTVLVVDHHGTNTLFGTYNWV 126


>gi|260495596|ref|ZP_05815721.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260196938|gb|EEW94460.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 358

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 21/362 (5%)

Query: 82  ARRIVQAIYNSE---KIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGP 137
           A  +      SE   K++I    D DG  S A++++      + N    I   +      
Sbjct: 2   ADILCDTRLKSEEAPKVIILTHGDADGLVS-AMIVKAFEELQNKNKTFLIMSSMDVTLEQ 60

Query: 138 NPSLMEKFINE----GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193
                +             I  +D    S + L+       +VI IDHH   +  +    
Sbjct: 61  TNKTFDYICKYASFGSKDRIYILDRPIPSVEWLKMKYLAYTNVINIDHHLTNNPTMYKDE 120

Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
                   D             +L L     ++ +       +    L  L    +  D+
Sbjct: 121 CCC-----DDIYFYWNDKLSAAYLTLEWFKPLIEKSEVYKKMY--EKLEPLAEATSCWDI 173

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313
                L  +     L       N   K L      +      N         N    + E
Sbjct: 174 FTWKNLGNSQKELLLKRRALSINSAEKILGAGAFYNFITKKLNSENYTEEIFNYFFLLDE 233

Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372
             NL    L     + +     K   L     +        A+  +  +  D +  + + 
Sbjct: 234 AYNLKIDNLFDFAKRVISDFDYKGYKLGVIYGIDGDYQSIIADKILFDKKLDYEVVAFLN 293

Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG-RSIEGFDIGKMVSFAVEE 431
           V G         +  + + +K       + +   G    SG R  +  ++ K +    E 
Sbjct: 294 VYGTVSFRSKNDIDVSDIAKK---LGMIVGYSGGGHKHASGCRICDRDEMKKKMMEIFEH 350

Query: 432 GI 433
            +
Sbjct: 351 SM 352


>gi|218295540|ref|ZP_03496353.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus
           Y51MC23]
 gi|218244172|gb|EED10698.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus
           Y51MC23]
          Length = 1030

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 27  INRALAITQKHAIPDIVAR---VLVNRNV----SIDYAKDFLNPSIRLLMPDPLILTD-- 77
              AL + ++     ++AR   VL  R +    S +  K +L      L   P IL D  
Sbjct: 693 PEEALELAKEVGF-PLLARPSYVLGGRAMRVLKSQEELKRYLEEVYGPLQEKPSILLDRY 751

Query: 78  CDKAARRIVQAIYNSEKIMIFG 99
            + A    V A+ + E++MI G
Sbjct: 752 LEGALELDVDALSDGEEVMIAG 773


>gi|116492784|ref|YP_804519.1| single-stranded DNA-binding protein [Pediococcus pentosaceus ATCC
           25745]
 gi|116102934|gb|ABJ68077.1| Single-stranded DNA-binding protein [Pediococcus pentosaceus ATCC
           25745]
          Length = 132

 Score = 37.4 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 545 AFRVYGTPLGEFLMQS---RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589
            FR          ++    +G  + VTG L +N + G  + Q+ V D 
Sbjct: 47  WFRCSVWGTRAITVEKFYKKGSHVVVTGSLSINEYNGKTQLQIDVSDF 94


>gi|299141106|ref|ZP_07034244.1| DHH subfamily 1 protein [Prevotella oris C735]
 gi|298578072|gb|EFI49940.1| DHH subfamily 1 protein [Prevotella oris C735]
          Length = 345

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 59/221 (26%), Gaps = 9/221 (4%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVD-----G 134
              +   I ++E I++ G    DG A    L    +L     +A + +PD   D      
Sbjct: 11  VETLKATIRDAENIIVVGHKSPDGDALGACLAWTEYLRQWGKSAQIIVPDAFPDFLKWLP 70

Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194
                   +K   E   L    D            T       +++    K   I  +  
Sbjct: 71  GSEQVMRYDKHPEEVKALCQQAD--LLFCLDFNEMTRLEELQEIVEASPAKRVLIDHHLN 128

Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254
                +  +S         +VF V+  +      + K+        + D           
Sbjct: 129 PAIEGVVTVSHPEASSTCELVFRVICQLGDFDHLNQKIAAPIYCGMMTDTGGFTYNSTRP 188

Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
            +  +    +  G+   +   N         +     + +E
Sbjct: 189 EIYTIIGMLLTTGIDKDKIYRNVFNNYSQWAIRFRGYLMSE 229


>gi|189183297|ref|YP_001937082.1| pyruvate phosphate dikinase [Orientia tsutsugamushi str. Ikeda]
 gi|189180068|dbj|BAG39848.1| phosphate dikinase precursor [Orientia tsutsugamushi str. Ikeda]
          Length = 901

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 29  RALAITQK-----HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM--PDPLILTDCDKA 81
           +A  + Q+         D+         +S D +  F+N  I   +   DP    DC+  
Sbjct: 779 QAYELAQEVDFFCFGTNDLTQTTY---GISRDDSTSFINQYIENDIFTADPFTTLDCEAV 835

Query: 82  ARRIVQAIYNSE------KIMIFGDYDVD 104
              I  AI          KI I G++  D
Sbjct: 836 GELIQIAIERGRTAKKHLKIGICGEHAAD 864


>gi|45478055|gb|AAS66358.1| (+)-valencene synthase [Vitis vinifera]
          Length = 556

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 49/459 (10%), Positives = 110/459 (23%), Gaps = 41/459 (8%)

Query: 71  DPLILTDCDKAARRIVQAIYNSEKI-----MIFGDY----DVDG----AASVALMMRFLS 117
           +P  L +   A +R+  A +  ++I      I   +    D+DG        AL  R L 
Sbjct: 69  NPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCNDMDGDLYNI---ALGFRLLR 125

Query: 118 HCSVNANMYIPDRIVDG------------YGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165
                 +  I ++  D              G         +    + I+      T+   
Sbjct: 126 QQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRVHGEDILAKALAFTTTHL 185

Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF--LVLVLIY 223
                + G  +     H +          +       +          ++    +   + 
Sbjct: 186 KAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQDEAFHDKTLLELAKLDFNLV 245

Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283
           + L ++    L       LD            + G    + V       R      K + 
Sbjct: 246 QSLHKEELSNLARWWKE-LDFATKLPFARDRLVEGYFWMHGVYFEPQYLRGRRILTKVIA 304

Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL---- 339
               +     A      +   I A  R   +++              +   K        
Sbjct: 305 MTSILDDIHDAYGTPEELKLFIEAIERWDINSINQLPEYMKLCYVALLDVYKEIEEEMEK 364

Query: 340 --NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397
             NQ R      +++        +   + +  V   E                   F   
Sbjct: 365 EGNQYRVHYAKEVMKNQVRAYFAEAKWLHEEHVPAFEEYMRVALASSGYCLLATTSFVGM 424

Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457
               + E         + +   +    +   ++     +  GH  +  +      +G   
Sbjct: 425 GEIATKEAFDWVTSDPKIMSSSNFITRLMDDIKSHKFEQKRGHVTS-AVECYMKQYGVSE 483

Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496
           +         +         +    L  +AV++ L+  L
Sbjct: 484 EQVYSEFQKQIENAWLDINQEC---LKPTAVSMPLLARL 519


>gi|121583810|ref|NP_001073490.1| neurexin 1a [Danio rerio]
 gi|109137012|gb|ABG25161.1| neurexin 1a alpha [Danio rerio]
          Length = 1491

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 21/77 (27%)

Query: 531 MTFESQDSET-----LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW-------RG 578
           +  E           L  I      +   E +   +         L  N W       RG
Sbjct: 756 LRLELDGGRVRLTVNLDCIRINCTTSKGPETIFSGQN--------LNDNEWHTVRVVRRG 807

Query: 579 SKRCQLRVLDASPVEGH 595
            K  +L V D  P EG 
Sbjct: 808 -KSLKLMVDDLQPSEGQ 823


>gi|145551642|ref|XP_001461498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429332|emb|CAK94125.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 19/91 (20%)

Query: 512 AFPNHKLQSIRVVNLAHL---QMTFESQDSETL------QAIAFRVYGTPLGEFLMQSRG 562
              + K    +V+  AH+   +    S D + L      ++I F  Y    G++L     
Sbjct: 472 YLRDVKSGKFKVIKDAHINYRRSIILSPDGKILGSDNGDKSIHF--YDVKTGQYLESFDN 529

Query: 563 KRMHVTGHLCVNYWRGSK--------RCQLR 585
           +   + G    N +  +           QL 
Sbjct: 530 RYNDILGQFQTNIFNNNPHRNATSNITLQLI 560


>gi|73948652|ref|XP_849522.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 327

 Score = 37.4 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 56/207 (27%), Gaps = 29/207 (14%)

Query: 90  YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149
              + I +   +  DG  +  L++  L    +  + YI   +                  
Sbjct: 139 EKRKPIRVLSLF--DGI-ATGLLV--LKDLGIQVDCYIASEVCKDS-------------- 179

Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209
               ITV       D          +   +D   +        +++NP          + 
Sbjct: 180 ----ITVGKIMYVGDVCSVTQKHIQEWGPLD-LVIGGSPCNGLSIINPAHKG-----LYE 229

Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
               + F    L++    ++      F L   +  + ++   D+  ++  N   +    +
Sbjct: 230 GTGRLFFEFYHLLHYARPKEGDDRPFFWLFENVVAMGISDKRDISRILKSNPMMINAKEV 289

Query: 270 VARRQGNPGLKALIERVNISSPITAEN 296
            A  + +     L          T  +
Sbjct: 290 SAAHRAHYFWGNLPGMNRRPLASTVND 316


>gi|145510748|ref|XP_001441306.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408547|emb|CAK73909.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3013

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 35/384 (9%), Positives = 81/384 (21%), Gaps = 37/384 (9%)

Query: 145  FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD-- 202
            F          +D        +    ++      I   + +S        VN N      
Sbjct: 1380 FRYFLMNSCPCLDGFYDVGIEMCQKCSEFCKTCSISSTKCQSCFPNHLRAVNQNNCTCIP 1439

Query: 203  ------------LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS-LLDLVALAT 249
                         S     C     +     + +     + +     L    LD   +  
Sbjct: 1440 GYFDSGSLICEKCSNSCQTCKNQKDYCTSCDVNQNRLDQSIIHKCPCLSDFYLDSNEICQ 1499

Query: 250  VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309
             C V     +N     +G    +      +       +       + +            
Sbjct: 1500 KCHVKCSGCVNERNNCQGCKYLQGSNRLTISNQCNCKDGYYDDDFQIICNKCDNRCKTCQ 1559

Query: 310  RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ--------------AE 355
            +  ++ L     +  +  +   +    +   Q     E                      
Sbjct: 1560 KGAKNCLSCFSNVRINPPDCPCMKGYFETSQQVCEACEFQCDTCETMPSNCLTCKEGRIN 1619

Query: 356  AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415
                 +    +   ++ ++ D             L  K  R        +DG       S
Sbjct: 1620 KLCDCEDGYFEGGQILCIQCDFQCQKCKKSSTNCLACKGDRLQIPFCRCQDGYY-DDFYS 1678

Query: 416  IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE-------RVNFGRLCDFFQKFAHNIV 468
                           +G L   G   ++  +T +        +      +         +
Sbjct: 1679 FNCLKCDYTCKTCSSQGCLKCNGNRILSDQMTCDPPPNSISWLLTPWCSNCEVAVMKIKL 1738

Query: 469  PALITTPVFKIDGVLNASAVNIAL 492
               + T +   D  LN +  +  L
Sbjct: 1739 SDDLATIIVLFDFPLNQNFFSTQL 1762


>gi|227833352|ref|YP_002835059.1| putative exopolyphosphatase family protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184338|ref|ZP_06043759.1| putative exopolyphosphatase family protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454368|gb|ACP33121.1| putative exopolyphosphatase family protein [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 320

 Score = 37.0 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 12/137 (8%)

Query: 76  TDCDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133
           T+ + A   +VQA      I I      D D   S A +   L          I  R   
Sbjct: 4   TNYEAAVDALVQA----SSICIITHLRPDADAVGSAAALTLALRQRGKQTRTVIGQRRDI 59

Query: 134 GYG------PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187
                     +   +   + +G  L +TVDCGS           + +  +          
Sbjct: 60  SANLFSIPTVDEIELVDELPQGYDLYVTVDCGSIDRTGSVAREIEEMAAVGRVLCIDHHA 119

Query: 188 EIPAYALVNPNRLDDLS 204
               +  +N       S
Sbjct: 120 SNDGFGAINVVDPVCES 136


>gi|148284437|ref|YP_001248527.1| pyruvate phosphate dikinase [Orientia tsutsugamushi str. Boryong]
 gi|146739876|emb|CAM79833.1| pyruvate, phosphate dikinase [Orientia tsutsugamushi str. Boryong]
          Length = 901

 Score = 37.0 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 29  RALAITQK-----HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM--PDPLILTDCDKA 81
           +A  + Q+         D+         +S D +  F+N  I   +   DP    DC+  
Sbjct: 779 QAYELAQEVDFFCFGTNDLTQTTY---GISRDDSTSFINQYIENDIFAADPFATLDCEAV 835

Query: 82  ARRIVQAIYNSE------KIMIFGDYDVD 104
              I  AI          KI I G++  D
Sbjct: 836 GELIQIAIERGRTAKKHLKIGICGEHAAD 864


>gi|312075954|ref|XP_003140645.1| hypothetical protein LOAG_05060 [Loa loa]
 gi|307764193|gb|EFO23427.1| hypothetical protein LOAG_05060 [Loa loa]
          Length = 666

 Score = 37.0 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 94  KIMIFGDYDVDGAASVALMMRFLSHCSVNANMY----IPDRIVDGYGPNPSLMEKFINEG 149
            ++I  D+D D   S ++M +       N  MY    +P R   G       +       
Sbjct: 246 NVIIVSDHDADSITS-SIMTKLQCQHGNNYLMYGKDTVPIRFHYGGSSRIGDIIISARPE 304

Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVI 177
             + +T +   +      +  +  ID +
Sbjct: 305 TSIFLTAEQNESYTRLGDHGYDNRIDSM 332


>gi|281424097|ref|ZP_06255010.1| DHH subfamily 1 protein [Prevotella oris F0302]
 gi|281401754|gb|EFB32585.1| DHH subfamily 1 protein [Prevotella oris F0302]
          Length = 345

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 11/222 (4%)

Query: 82  ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVDGYGPNP 139
              +   I ++E I++ G    DG A    L    +L     +A + +PD   D     P
Sbjct: 11  VETLKATIRDAENIIVVGHKSPDGDALGACLAWTEYLRQWGKSAQIIVPDAFPDFLKWLP 70

Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199
              +    +     + V C       L +  +      + +  ++         L++ + 
Sbjct: 71  GSEQVMRYDKHPEEVEVLC---QQADLLFCLDFNEMTRLEELQEIVEVSPAKRVLIDHHL 127

Query: 200 LD------DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253
                    +S         +VF V+  +      + K+        + D          
Sbjct: 128 NPAIEGVVTVSHPEASSTCELVFRVICQLGGFEHLNQKIAAPIYCGMMTDTGGFTYNSTR 187

Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295
             +  +    +  G+   +   N         +     + +E
Sbjct: 188 PEIYTIIGMLLTTGIDKDKIYRNVFNNYSQWAIRFRGYLMSE 229


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.127    0.346 

Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,501,096,219
Number of Sequences: 14124377
Number of extensions: 267333341
Number of successful extensions: 647849
Number of sequences better than 10.0: 2676
Number of HSP's better than 10.0 without gapping: 2460
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 632412
Number of HSP's gapped (non-prelim): 2841
length of query: 600
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 455
effective length of database: 2,794,758,965
effective search space: 1271615329075
effective search space used: 1271615329075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 84 (37.0 bits)