BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter asiaticus str. psy62] (600 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040578|gb|ACT57374.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 600 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 600/600 (100%), Positives = 600/600 (100%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF Sbjct: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS Sbjct: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID Sbjct: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS Sbjct: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM Sbjct: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT Sbjct: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD Sbjct: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID Sbjct: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET Sbjct: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK Sbjct: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 >gi|315122680|ref|YP_004063169.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496082|gb|ADR52681.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 596 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 489/596 (82%), Positives = 543/596 (91%), Gaps = 1/596 (0%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 MN QAFLGVE SISGFRW+SLLGQE INRALAITQKHAIPD+VARVLV R+VSID A++F Sbjct: 1 MNYQAFLGVERSISGFRWLSLLGQEEINRALAITQKHAIPDLVARVLVGRHVSIDCAEEF 60 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 LNPSIR LMP+PL LTDCDKAARRIVQAIYNSEKI I GDYDVDGAASVALMMRF S+ Sbjct: 61 LNPSIRSLMPNPLTLTDCDKAARRIVQAIYNSEKIAILGDYDVDGAASVALMMRFFSYYG 120 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 V++NMYIPDRI+DGYGPNP LM+K I+EGAQLIITVDCGSTS++ALQ+++NQGIDVIVID Sbjct: 121 VDSNMYIPDRILDGYGPNPDLMKKIIDEGAQLIITVDCGSTSHEALQFSSNQGIDVIVID 180 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLL 239 HHQ+K+EE PAYALVNPNR DDLSGQGHLCAAGVVFLVLV+I RIL+QDNK+P FDLL Sbjct: 181 HHQMKTEETPAYALVNPNRSDDLSGQGHLCAAGVVFLVLVMICRILQQDNKIPIKYFDLL 240 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 SLLDLVALATVCDVVPLI LNRAYV KGL+V+R+QGNPGLKALIER+N+S+PITA+NLG+ Sbjct: 241 SLLDLVALATVCDVVPLIDLNRAYVTKGLLVSRKQGNPGLKALIERINLSAPITADNLGF 300 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 MIGP INAGGRIGE+NLGSRLLISDD QELE +AMKLDVLNQNRRLMESAMLEQAE +VL Sbjct: 301 MIGPCINAGGRIGEANLGSRLLISDDPQELEAIAMKLDVLNQNRRLMESAMLEQAEVEVL 360 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 Q + +QQAS+IVV GD+WHPGIVGLLAARLKEKF RPSFAISF+E GKGIGSGRSIEGF Sbjct: 361 AQYEHMQQASIIVVAGDQWHPGIVGLLAARLKEKFDRPSFAISFDESGKGIGSGRSIEGF 420 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 DIGKMVSFA EEGIL+KGGGHAMAAGLTVERVNF RL DFFQ FA+ + +L++ PV KI Sbjct: 421 DIGKMVSFAFEEGILLKGGGHAMAAGLTVERVNFNRLRDFFQAFANKRMSSLVSMPVLKI 480 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG LNASAVNI LI+MLESAGPYG+GNP PVFAFP+HKL+++R+V L HLQMTF+SQDSE Sbjct: 481 DGALNASAVNIKLIEMLESAGPYGSGNPRPVFAFPSHKLENVRIVKLNHLQMTFKSQDSE 540 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 LQ IAFRVYGTPLGEFLMQS GK MHV GHLCVN+WRGSKR QLRVLDA+PVE H Sbjct: 541 VLQGIAFRVYGTPLGEFLMQSHGKWMHVIGHLCVNHWRGSKRAQLRVLDAAPVENH 596 >gi|222085813|ref|YP_002544343.1| single-stranded-DNA-specific exonuclease protein [Agrobacterium radiobacter K84] gi|221723261|gb|ACM26417.1| single-stranded-DNA-specific exonuclease protein [Agrobacterium radiobacter K84] Length = 604 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 346/590 (58%), Positives = 440/590 (74%), Gaps = 1/590 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S+SG RWVS L Q G NRALA+ Q H +PD++ARVL R V +D A FL+P Sbjct: 14 RAFLGVERSVSGNRWVSRLDQAGQNRALAMAQTHGLPDLIARVLAGRGVGVDEAMAFLDP 73 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP +LTDC+KAA R+++A+ E + IFGDYDVDGAAS AL+ RFL+H V A Sbjct: 74 TIRSLMPDPYLLTDCEKAAGRLLRAVKTGETVAIFGDYDVDGAASSALLYRFLTHFGVPA 133 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++YIPDRI +GYGPNP+ + + I+ GA LI+TVDCGSTS+++L+ A + IDV+VIDHHQ Sbjct: 134 SIYIPDRIFEGYGPNPAAINQLIDNGATLIVTVDCGSTSFESLEAAKARNIDVVVIDHHQ 193 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V E +ALVNPNR DDLSGQGHLCAAGVVFLVLV R LR+ V DLL+ L Sbjct: 194 VAHELPHCHALVNPNREDDLSGQGHLCAAGVVFLVLVAALRQLREAGDVRVRTIDLLTWL 253 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR QGNPGL AL + + P++ + G++IG Sbjct: 254 DIVALATVCDVVPLKGLNRAYVVKGLIAARHQGNPGLAALFRKAGLGGPVSPYHFGFLIG 313 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LG+RLL D+ E E++A KLD LN+ R+ ME+AML++AEA+ L + Sbjct: 314 PRINAGGRIGDAALGARLLTLADTSEAEIIAEKLDELNRERQAMEAAMLQEAEAEALAEY 373 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 + ASVIV + WHPGIVGL+A+RLK+KF RP+FAI+F+ GKG GSGRSI GFD+G Sbjct: 374 GNGDGASVIVTARENWHPGIVGLIASRLKDKFRRPAFAIAFDPMGKGTGSGRSINGFDMG 433 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AV+ G+LVKGGGHAMAAGLTVER N G+L FF + A VP L+ KIDG Sbjct: 434 RMVRAAVDAGLLVKGGGHAMAAGLTVERGNLGKLRAFFTEKAERQVPGLVANETLKIDGA 493 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L AS + LID LE+AGPYG+G+P P+FA P+H+L+ R+V +H+++T E+QD L Sbjct: 494 LGASGATVDLIDQLETAGPYGSGHPQPIFALPSHRLRDSRLVGQSHIKITLEAQDGGRLD 553 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR TPLGE LM SRG ++HV G L ++W+G++R QLRV DA+ Sbjct: 554 GIAFRAAETPLGELLMSSRGSQVHVAGTLGADHWQGNRRVQLRVTDAAKA 603 >gi|240850783|ref|YP_002972183.1| single-stranded-DNA-specific exonuclease [Bartonella grahamii as4aup] gi|240267906|gb|ACS51494.1| single-stranded-DNA-specific exonuclease [Bartonella grahamii as4aup] Length = 594 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 285/590 (48%), Positives = 387/590 (65%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 + FL VE S G W+ L +GIN A AI+QK PD +ARVL R+V A F+N Sbjct: 4 SRYFLNVESSACGQAWLDALDVQGINNARAISQKFGFPDQLARVLSARDVDEAEAVAFIN 63 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R LMPDP D AA RIV+A+ N E++ +FGDYDVDGA S AL+ RF + + Sbjct: 64 PTLRTLMPDPESFRDMQCAAERIVKALLNQEQVAVFGDYDVDGACSSALIARFFRYFGIE 123 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +YIPDRI++GYGPN M + EGA+LIITVDCG+ S DA++ A G DV+++DHH Sbjct: 124 VKIYIPDRIIEGYGPNEQAMRMLVQEGARLIITVDCGANSPDAVKAARLAGADVVILDHH 183 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 Q+ A ALVNPNR DD S QGHLCAAGVVF+ L ++ +LR+ DLLS+L Sbjct: 184 QMSEIHQEAIALVNPNRPDDFSKQGHLCAAGVVFVTLAWVHHLLRKKQFQGQLPDLLSML 243 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALAT+CDVVPL G+NRA+V+KGL VAR NPG+ AL + I P+ + + G+++G Sbjct: 244 DLVALATICDVVPLQGVNRAFVIKGLQVARSMHNPGITALTKVARIGEPLNSFHFGFLLG 303 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG+ LG+RLL ++ E + +A +LD LNQ R+ ME+ L QAE+ + + Sbjct: 304 PRINAGGRIGDQALGARLLSCENKDEADRIAEQLDRLNQERQEMENIQLAQAESYIASLY 363 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + +V+ WHPGI+G+LA+RLKE+F P FAI+ +EDG G+GSGRSI G D+G Sbjct: 364 QDQEIPLSLVISHKEWHPGIIGILASRLKERFFCPVFAIALKEDGNGVGSGRSINGIDLG 423 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +V AV +L KGGGH+MAAG+T++ + ++ V L IDG Sbjct: 424 ALVREAVTLNLLEKGGGHSMAAGITIQSTKIEIFRKWLEEKVSLRVSELHAKKSLSIDGS 483 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L+AS VN AL ++LE AGP+G GN PVF P+H+L ++ V HL++ + + + LQ Sbjct: 484 LSASGVNEALFELLEKAGPFGTGNATPVFVLPSHRLVNLSEVGKGHLRLIVSNVEGKKLQ 543 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR GT LG+FL ++ G+ +H+ GHL +NYW G+ QLRV+DA+ V Sbjct: 544 GIAFRAVGTSLGDFLFENIGEMIHLAGHLSLNYWNGTTNPQLRVIDAAAV 593 >gi|121601735|ref|YP_989185.1| single-stranded-DNA-specific exonuclease RecJ [Bartonella bacilliformis KC583] gi|120613912|gb|ABM44513.1| single-stranded-DNA-specific exonuclease RecJ [Bartonella bacilliformis KC583] Length = 594 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 291/587 (49%), Positives = 388/587 (66%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66 L V+ S G WV L +GIN+A AI+QK +PD +ARVL R+V F+NP++R Sbjct: 8 LDVKSSACGQAWVDSLDIQGINKARAISQKFGLPDQLARVLSARDVDESEVISFINPALR 67 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 LMP+P TD AA R+V+AI N E + IFGDYDVDGA S AL+ RF + + Y Sbjct: 68 TLMPNPEHFTDMQCAAERLVKAIMNQENVAIFGDYDVDGACSSALLARFFRYFGIETKTY 127 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDRIV+GYGPN M+ + EGA LIITVDCG+ S +A++ A G DV+V+DHHQ+ Sbjct: 128 IPDRIVEGYGPNAQAMKALVQEGASLIITVDCGANSPEAIKVARLLGADVVVLDHHQMGD 187 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ALVNPNR DD S QGHLCAAGVVF+ L + +LR+ DLL++LDLVA Sbjct: 188 LHQEAVALVNPNRPDDFSEQGHLCAAGVVFITLAWVNHLLREKKWEGDIPDLLAMLDLVA 247 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 LAT+CDVVPL G+NRA+VVKGL VAR NPG+ AL + I P+ + +LG+++GP IN Sbjct: 248 LATICDVVPLKGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGFLLGPRIN 307 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGRIG+ LG+RLL D+ E + +A +LD LNQ R+ MES L QAEA + + D + Sbjct: 308 AGGRIGDQALGARLLSCDNRDEADRIAKQLDQLNQERQEMESVQLAQAEAYIHSIYQDEE 367 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 IVV WHPGIVG+LA+RLKE+F P FAI+ + DGKGIGSGRSI+G D+G++V Sbjct: 368 MPLSIVVAHQEWHPGIVGILASRLKERFFCPVFAIALKADGKGIGSGRSIDGIDLGELVR 427 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 AV +L KGGGH+MAAGLT++ ++ ++ +V L IDG ++AS Sbjct: 428 EAVSLNLLEKGGGHSMAAGLTIQSTKINAFQEWLKEKVSLMVSQLRAEQCLNIDGFISAS 487 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 N L DM+E AGP+G+GN PVF P+H+L ++ V HL++T + + LQ IAF Sbjct: 488 GANKDLFDMIEKAGPFGSGNATPVFVLPSHRLVNLHEVGKGHLRLTVSDIEGKKLQGIAF 547 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 R T LG+FL+++ K +H+ G+L +NYW G+ QLRV+DA+ V+ Sbjct: 548 RAVETSLGDFLVKNIDKTIHLAGNLSLNYWNGTITPQLRVIDAAAVD 594 >gi|241204470|ref|YP_002975566.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858360|gb|ACS56027.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 600 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 341/591 (57%), Positives = 436/591 (73%), Gaps = 1/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S RWV+ L Q G NRALA++Q H +PD++ARVL R V++D A +FL+P Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQIHGLPDLIARVLAGRGVTVDEAIEFLDP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP LTDC+KAA R+++AI E + IFGDYDVDGAAS ALM RFLSH V A Sbjct: 70 TIRSLMPDPHKLTDCEKAANRLLRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGVRA 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDR+ +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL A + IDV+VIDHHQ Sbjct: 130 TIYIPDRVFEGYGPNPAAINQLIDNGAELIVTVDCGSTSHEALAAAAARNIDVVVIDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V E P +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR L DLL L Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILAIDLLQWL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL + ++ P+T + G++IG Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E +++A +LD LN+ R+ ME+ ML++AEA+ L + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEADVIAQRLDELNRERQAMEAIMLQEAEAEALAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + ASVIV ++WHPGIVGL+AARLKEKF RP+FAI+F+ G+G GSGRSI GFD+G Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AV+EG+LVKGGGHAMAAGLTVER + GRL FF + A V +L+ KIDG Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERTDLGRLRTFFTEKAERTVASLVANETLKIDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + LID LE+AGPYG+G+ P+FA P H+L+ R+V H+++T E+ D L Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAIPAHRLRDARLVGEKHVKVTLEAMDGSRLD 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAFR TPLG L+ SRG +HV G L ++++G++R QLRV DA+P + Sbjct: 550 GIAFRAADTPLGNLLINSRGANLHVAGSLGADHYQGARRIQLRVCDAAPAK 600 >gi|163868609|ref|YP_001609818.1| single-stranded-DNA-specific exonuclease [Bartonella tribocorum CIP 105476] gi|161018265|emb|CAK01823.1| single-stranded-DNA-specific exonuclease [Bartonella tribocorum CIP 105476] Length = 594 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 283/590 (47%), Positives = 387/590 (65%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 + FL VE S G W+ L +GIN A AI+QK PD +ARVL R V A F++ Sbjct: 4 SRYFLNVESSACGQAWLDALDVQGINNARAISQKFGFPDQLARVLSARGVDETEAVAFID 63 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R+LMPDP D AA RIV+A+ N E++ +FGDYDVDGA + AL+ RF + + Sbjct: 64 PTLRMLMPDPESFRDMQCAAERIVKALLNQEQVAVFGDYDVDGACASALIARFFRYFGIE 123 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +YIPDRIV+GYGPN M + EGA+LIITVDCG+ S DA++ A G DV+++DHH Sbjct: 124 VKIYIPDRIVEGYGPNEQAMRMLVQEGARLIITVDCGANSPDAVKAARLAGADVVILDHH 183 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 Q+ A ALVNPNR DD S QG+LCAAGVVF+ L ++ +LR+ DLLS+L Sbjct: 184 QMSEIHQEAIALVNPNRPDDFSEQGYLCAAGVVFVTLAWVHHLLRKKQFEGPLPDLLSML 243 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALAT+CDVVPL G+NRA+VVKGL VAR N G+ AL + I P+ + +LG+++G Sbjct: 244 DLVALATICDVVPLQGVNRAFVVKGLHVARSMHNLGIAALTKVARIGEPLNSFHLGFLLG 303 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG+ LG+RLL ++ E + +A +LD LNQ R+ ME L QAE+ + + Sbjct: 304 PRINAGGRIGDQALGARLLSCENKDEADRIAEQLDQLNQERQEMEKIQLAQAESYIASLY 363 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + +V+ WHPGI+G+LA+RLKE+F P FAI+ +EDG G+GSGRSI G D+G Sbjct: 364 QDQEPPLSLVISHQEWHPGIIGILASRLKERFFCPVFAIALKEDGNGVGSGRSIHGIDLG 423 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +V AV +L KGGGH+MAAG+T++ + ++ +V L +IDG Sbjct: 424 ALVREAVTLNLLEKGGGHSMAAGITIQSTKIEFFRKWLEEKVSVMVSQLHAKKSLRIDGS 483 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L+AS N AL ++LE AGP+G GN PVF P+H+L ++ V HL++ + + + LQ Sbjct: 484 LSASGANQALFELLEKAGPFGTGNATPVFVLPSHRLMNLSEVGKGHLRLIISNGEGKKLQ 543 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR GT LG+FL ++ G+ +H+ GHL +NYW G+ QLRV+DA+ V Sbjct: 544 GIAFRAVGTALGDFLSRNIGEMIHLAGHLSLNYWNGTINPQLRVIDAAAV 593 >gi|319898876|ref|YP_004158969.1| single-stranded-DNA-specific exonuclease [Bartonella clarridgeiae 73] gi|319402840|emb|CBI76391.1| single-stranded-DNA-specific exonuclease [Bartonella clarridgeiae 73] Length = 594 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 291/585 (49%), Positives = 387/585 (66%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 L VE S G WV L E +N A AI+QK +PD +ARVL R+V A F+NP++ Sbjct: 7 LLNVESSAWGQAWVDALDIERVNNARAISQKFGLPDQLARVLAARDVDESEAITFINPTL 66 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 R+LMP+P D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL + + + Sbjct: 67 RVLMPNPKDFIDMHCAAERLVKAIINREKIAVFGDYDVDGACSAALLARFLHYFGIIVKI 126 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 YIPDRI++GYGPN M+ + EGA LIITVDCG+ S DAL+ A G DVIV+DHHQ++ Sbjct: 127 YIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPDALRAAKFAGADVIVLDHHQME 186 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 + A ALVNPNR DDLS QGHLCAAGVVF+ L+ + R+LR+ DLLS+LDLV Sbjct: 187 NVHEEAVALVNPNRPDDLSEQGHLCAAGVVFITLIWVNRLLREKKWGGALPDLLSMLDLV 246 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 ALAT+CD+VPL G+NRA+VVKGL VAR NPG+ AL + +I P+ + +LG+++GP I Sbjct: 247 ALATICDIVPLKGVNRAFVVKGLQVARSMRNPGIAALAKVAHIGEPLNSFHLGFLLGPRI 306 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NAGGRIG LG+ LL +D E + +A +LD LN+ R+ ME L QAE + + D Sbjct: 307 NAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEMIQLAQAEVYIDSIYQDE 366 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 S V+ WHPGI+G+LAARLKE+F P AI+ +EDG GIGSGRSI G D+G +V Sbjct: 367 AMPSSFVIAHKEWHPGIIGILAARLKERFFCPVLAIALKEDGSGIGSGRSISGIDLGALV 426 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 AV +L KGGGH+MAAG T++ ++ ++ +V L IDG L+A Sbjct: 427 HEAVTLNLLEKGGGHSMAAGFTIQSTKIEAFREWLEEKVSLMVSQLRAEKSLSIDGFLSA 486 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 S N L DM+E AGP+G+GN PVF FP+H+L ++ V HL++ + + L+ IA Sbjct: 487 SGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISDIEGKKLKGIA 546 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F GT LG+FL ++ GK++H+ G+L +N+WRGS QLRV+DA+ Sbjct: 547 FGAVGTSLGKFLSKNIGKKIHLAGNLSLNHWRGSISPQLRVIDAA 591 >gi|319408572|emb|CBI82225.1| single-stranded-DNA-specific exonuclease [Bartonella schoenbuchensis R1] Length = 593 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 291/586 (49%), Positives = 382/586 (65%), Gaps = 1/586 (0%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66 L V+ S WV L +GIN A AI+QK PD +ARVL RNV A F+NP++R Sbjct: 8 LNVKSSACDQAWVDPLDIQGINNARAISQKFGFPDQLARVLAARNVDESEAVSFINPTLR 67 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+P+P TD AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL + + +Y Sbjct: 68 NLLPNPESFTDMQCAAERLVKAIMNREKIAVFGDYDVDGACSSALLARFLRYFGITVKIY 127 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDRIV+GYGPN M+ EGA LIITVDCG+ S DA++ A G DV+V+DHHQ+ Sbjct: 128 IPDRIVEGYGPNEQAMKMLAQEGASLIITVDCGANSPDAIKAARFAGADVVVLDHHQMSD 187 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ALVNPNR DD S QGHLCAAG+VF+ LV + +LR+ DLLS+LDLVA Sbjct: 188 VHQEAVALVNPNRPDDFSEQGHLCAAGIVFVTLVWVNHLLRKQKWTETVPDLLSMLDLVA 247 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 LATVCDVVPL G+NRA+VVKGL VAR N G+ AL + I PI + +LG+++GP IN Sbjct: 248 LATVCDVVPLRGVNRAFVVKGLQVARSMHNAGIAALAKVARIGEPINSFHLGFLLGPRIN 307 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGRIG+ LG+RLL D+ E + +A +L+ LNQ R+ ME+ L QAEA + + D + Sbjct: 308 AGGRIGDQALGARLLSCDNRDEADKMAEQLNKLNQERQEMEAIQLAQAEAYIDSVHHDKE 367 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S+ VV WHPGIVG+LA+RLKE+F P F I+ + DG G GSGRSI G D+G +V Sbjct: 368 MSSL-VVACQEWHPGIVGILASRLKERFFCPVFVIALKADGSGTGSGRSISGVDLGALVH 426 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 AV +L KGGGH+MAAG+T++ ++ ++ +V L IDG L+AS Sbjct: 427 EAVTLNLLEKGGGHSMAAGITIQSTKVEAFREWLEEKVSLVVSQLRAKKSLSIDGFLSAS 486 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 N L DM+E AGP+G+ N PVF P+H+L S+ V HL++ + + LQ IAF Sbjct: 487 GANKDLFDMIEKAGPFGSENATPVFVLPSHRLVSVCEVGKGHLRLFVSDLEGKKLQGIAF 546 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 GT LG FL ++ G+ +HV G+L +NYW G+ + QLRV+DA+ V Sbjct: 547 HAVGTSLGNFLSENVGETIHVAGNLSLNYWNGTIKPQLRVIDAATV 592 >gi|319407211|emb|CBI80850.1| single-stranded-DNA-specific exonuclease [Bartonella sp. 1-1C] Length = 594 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 289/589 (49%), Positives = 387/589 (65%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + L ++ S W+ L + N A AI+QK +P+ +ARVL RNV A F+NP Sbjct: 5 RYLLNIQSSACNQVWIDALDIDRTNNARAISQKFGLPEQLARVLAARNVDESEAMVFINP 64 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R+LMP+P TD D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL + Sbjct: 65 TLRVLMPNPKKFTDMDCAAERLVKAIINQEKIAVFGDYDVDGACSAALLARFLHCFGIIV 124 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI++GYGPN M+ + EGA LIITVDCG+ S +A++ A G DVIV+DHHQ Sbjct: 125 KIYIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPNAIRAARLAGADVIVLDHHQ 184 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 +++ A ALVNPNR DD S QGHLCAAGVVF+ L+ + R+LR+ DLLS+LD Sbjct: 185 MENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLREKKWKGALPDLLSMLD 244 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALAT+CDVVPL G+NRA+VVKGL VAR NPG+ AL + I P+ + +LG+++GP Sbjct: 245 LVALATICDVVPLQGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGFLLGP 304 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG LG+ LL +D E + +A +LD LN+ R+ ME + L QAEA + + Sbjct: 305 RINAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEISQLAQAEAYIDSIYQ 364 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + S V+ WHPGI+G+LAARLKE+F P I+ +EDG GIGSGRSI G D+G Sbjct: 365 ERTIPSSFVIAHKGWHPGIIGILAARLKERFFCPVLIIALKEDGSGIGSGRSISGIDLGA 424 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V AV +L KGGGH+MAAG T++ ++ ++ IV L IDG L Sbjct: 425 LVHEAVTLNLLEKGGGHSMAAGFTIQSDKIEAFREWLEEKISLIVSQLRAEKSLSIDGFL 484 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +AS N L DM+E AGP+G+GN PVF FP+H+L ++ V HL++ + + E LQ Sbjct: 485 SASGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISNIEGEKLQG 544 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF GT LG+FL ++ GK +H+ G+L +N+WRGS QLRV+DA+ V Sbjct: 545 IAFGAVGTTLGKFLSENIGKTIHLAGNLSLNHWRGSISPQLRVIDAAAV 593 >gi|86357505|ref|YP_469397.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli CFN 42] gi|86281607|gb|ABC90670.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli CFN 42] Length = 600 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 343/593 (57%), Positives = 433/593 (73%), Gaps = 1/593 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 +AFLGVE S RWV+ L Q G NRALA+ Q H +PD++ARVL R V +D A +FL Sbjct: 8 VPRAFLGVEKSALDNRWVARLDQAGQNRALAMAQVHGLPDLIARVLAGRGVRVDEAIEFL 67 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+IR LMPDP LTDC+KAA R+V+AI E + IFGDYDVDGAAS ALM RFLSH V Sbjct: 68 DPTIRSLMPDPHTLTDCEKAATRLVRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGV 127 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 AN+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL A + IDV+VIDH Sbjct: 128 KANIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDH 187 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLS 240 HQV E P +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR + DLL Sbjct: 188 HQVTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRIMALDLLQ 247 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LD+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL + ++ P+T + G++ Sbjct: 248 WLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFL 307 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LGSRLL DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L Sbjct: 308 IGPRINAGGRIGDAALGSRLLTLDDAGEAEVIAQRLDELNRERQAMEAMMLQEAEAEALA 367 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + D + AS+IV ++WHPGIVGL+AARLKEKF RP+FAI+F+ G+G GSGRSI GFD Sbjct: 368 EYGDGEGASIIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFD 427 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G+MV AVEEGILVKGGGHAMAAGLTVER + GRL FF + A V +L+ KID Sbjct: 428 MGRMVRAAVEEGILVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVASLVANETLKID 487 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G + AS + LID LE+AGPYG+G+ P+FA P H+++ R+V H+++T E+ D Sbjct: 488 GAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSR 547 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L IAFR T LG L+ SRG +HV G L +++G++R QLRV DA+P + Sbjct: 548 LDGIAFRAADTGLGNLLINSRGASLHVAGSLGAEHYQGARRIQLRVCDAAPAK 600 >gi|319404201|emb|CBI77794.1| single-stranded-DNA-specific exonuclease [Bartonella rochalimae ATCC BAA-1498] Length = 594 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 289/589 (49%), Positives = 386/589 (65%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + L ++ S W+ L + N A AI+QK +PD +ARVL RNV A F+NP Sbjct: 5 RYLLNIQSSACNQAWIDALDMDRTNNARAISQKFGLPDQLARVLAARNVDESEAVVFINP 64 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R LMP+P TD D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL + Sbjct: 65 TLRALMPNPKKFTDMDCAAERLVRAIINQEKITVFGDYDVDGACSAALLARFLHCFGIIV 124 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI++GYGPN M+ + EGA LIITVDCG+ S +A++ A G DVIV+DHHQ Sbjct: 125 KIYIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPNAIRAARLAGADVIVLDHHQ 184 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 +++ A ALVNPNR DD S QGHLCAAGVVF+ L+ + R+LR+ DLLS+LD Sbjct: 185 MENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLREKKWKGALPDLLSMLD 244 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALAT+CDVVPL G+NRA+VVKGL VAR NPG+ AL + I P+ + +LG+++GP Sbjct: 245 LVALATICDVVPLQGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGFLLGP 304 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG LG+ LL +D E + +A +LD LN+ R+ ME + L QAEA + + Sbjct: 305 RINAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEISQLAQAEAYIDSIYQ 364 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + S V+ WHPGI+G+LAARLKE+F P I+ +EDG GIGSGRSI G D+G Sbjct: 365 ERTIPSSFVIAHKGWHPGIIGILAARLKERFFCPVLIIALKEDGSGIGSGRSISGIDLGA 424 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V AV +L KGGGH+MAAG T++ ++ ++ IV L IDG L Sbjct: 425 LVHEAVALNLLEKGGGHSMAAGFTIQSDKIEAFREWLEEKISLIVSQLRAEKSLNIDGFL 484 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +AS N L DM+E AGP+G+GN PVF FP+H+L ++ V HL++ + + E LQ Sbjct: 485 SASGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISNIEGEKLQG 544 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF GT LG+FL ++ GK +H+ G+L +N+WRG+ QLRV+DA+ V Sbjct: 545 IAFGAVGTALGKFLSENIGKTIHLAGNLSLNHWRGNISPQLRVIDAAAV 593 >gi|49475553|ref|YP_033594.1| single-stranded-DNA-specific exonuclease [Bartonella henselae str. Houston-1] gi|49238359|emb|CAF27583.1| Single-stranded-DNA-specific exonuclease [Bartonella henselae str. Houston-1] Length = 594 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 292/590 (49%), Positives = 387/590 (65%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 + FL V+ S G W+ L +GIN A AI+QK PD +ARVL R+V A F+N Sbjct: 4 SRYFLNVQSSACGQAWLDALDIQGINNARAISQKFGFPDQLARVLSARDVDESEAVAFIN 63 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R LMPDP TD AA RIV+AI EK+ +FGDYDVDGA S AL+ RFL + V Sbjct: 64 PTLRTLMPDPKSFTDMQYAAERIVKAILKQEKVAVFGDYDVDGACSSALIARFLRYFGVE 123 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +YIPDRIV+GYGPN M + +GA LIITVDCG+ S DA++ A G DV+V+DHH Sbjct: 124 VKIYIPDRIVEGYGPNEQAMRMLVQQGAHLIITVDCGANSPDAVKAARLAGADVVVLDHH 183 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 Q+ A ALVNPNR DD SGQGHLCAAGVVF+ L ++ +LR+ V DLLS+L Sbjct: 184 QMSEVHQEAVALVNPNRPDDFSGQGHLCAAGVVFVTLAWVHHLLRKKKFVEELPDLLSML 243 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALAT+CDVVPL G+NRA+VVKGL VA NPG+ AL + I P+ + +LG+++G Sbjct: 244 DLVALATICDVVPLQGVNRAFVVKGLQVAHSMHNPGIAALTKVARIGEPLNSFHLGFLLG 303 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG+ LG+RLL +D E + +A +L+ LNQ R+ ME+ L QAE+ + + Sbjct: 304 PRINAGGRIGDQALGARLLSCEDKGEADRIAEQLNQLNQERQEMEAIQLAQAESYIDSLY 363 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D ++ +V+ WHPGI+GLLA+RLKE+F P FAI+ +E+G GIGSGRSI G D+G Sbjct: 364 QDREKPLSLVIAHQEWHPGIIGLLASRLKERFFCPVFAIALKENGSGIGSGRSISGIDLG 423 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +V AV +L KGGGH+MAAG+T++ + ++ V L IDG Sbjct: 424 ALVREAVTLNLLEKGGGHSMAAGITIQSTKIEIFRKWLEERVSLNVSQLHAEKSLNIDGC 483 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L+AS N AL DM+E AGP+G+GN PVF P+H+L ++ V HL+ + + + LQ Sbjct: 484 LSASGANKALFDMIEKAGPFGSGNTTPVFVLPSHRLMNLCEVGKGHLRFIMSNMEGKKLQ 543 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR GT LG FL + G+ +HV G++ +NYW G+ QLRV+DA+ V Sbjct: 544 GIAFRAVGTSLGYFLSGNVGEMIHVAGNISLNYWNGNISPQLRVIDAAAV 593 >gi|190891568|ref|YP_001978110.1| single-stranded-DNA-specific exonuclease [Rhizobium etli CIAT 652] gi|190696847|gb|ACE90932.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli CIAT 652] Length = 600 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 342/591 (57%), Positives = 433/591 (73%), Gaps = 1/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S RWV+ L Q G NRALA++Q H +PD++ARVL R V +D A +FL+P Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQVHGLPDLIARVLAGRGVPVDEAIEFLDP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP LTDC+KAA R+V AI E + IFGDYDVDGAAS ALM RFLSH V A Sbjct: 70 TIRSLMPDPHTLTDCEKAATRLVSAIERGENVAIFGDYDVDGAASSALMFRFLSHFGVKA 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 N+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL A + IDV+VIDHHQ Sbjct: 130 NIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V E P +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR L DLL L Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILALDLLQWL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL + ++ P+T + G++IG Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEAELIAQRLDELNRERQAMEAMMLQEAEAEALAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + ASVIV ++WHPGIVGL+AARLKEKF RP+FAI+F+ G+G GSGRSI GFD+G Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AV+EG+LVKGGGHAMAAGLTVER + GRL FF + A V L+ KIDG Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLVANETLKIDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + LID LE+AGPYG+G+ P+FA P H+++ R+V H+++T E+ D L Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLD 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAFR T LG L+ SRG +HV G L ++++G++R Q+RV DA+P + Sbjct: 550 GIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQMRVCDAAPAK 600 >gi|327190809|gb|EGE57877.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli CNPAF512] Length = 600 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 341/591 (57%), Positives = 433/591 (73%), Gaps = 1/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S RWV+ L Q G NRALA++Q + +PD++ARVL R V +D A +FL+P Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQVYGLPDLIARVLAGRGVPVDEAIEFLDP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP LTDC+KAA R++ AI E + IFGDYDVDGAAS ALM RFLSH V A Sbjct: 70 TIRSLMPDPHTLTDCEKAATRLMSAIERGENVAIFGDYDVDGAASSALMFRFLSHFGVKA 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 N+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL A + IDV+VIDHHQ Sbjct: 130 NIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALASAAARNIDVVVIDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V E P +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR L DLL L Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILALDLLQWL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL + ++ P+T + G++IG Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEAEIIAQRLDELNRERQAMEAVMLQEAEAEALAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + ASVIV ++WHPGIVGLLAARLKEKF RP+FAI+F+ G+G GSGRSI GFD+G Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLLAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AV+EG+LVKGGGHAMAAGLTVER + GRL FF + A V L+ KIDG Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLVANETLKIDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + LID LE+AGPYG+G+ P+FA P H+++ R+V H+++T E+ D L Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGTRLD 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAFR T LG L+ SRG +HV G L ++++G++R Q+RV DA+P + Sbjct: 550 GIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQMRVCDAAPAK 600 >gi|154253388|ref|YP_001414212.1| single-stranded-DNA-specific exonuclease RecJ [Parvibaculum lavamentivorans DS-1] gi|154157338|gb|ABS64555.1| single-stranded-DNA-specific exonuclease RecJ [Parvibaculum lavamentivorans DS-1] Length = 603 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 264/595 (44%), Positives = 370/595 (62%), Gaps = 7/595 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 +AFLGVE S +G W+S L ALAI Q+ +P+IVARVL R V+ + +L Sbjct: 6 TRAFLGVERSATGRAWLSRL--ADDRLALAIAQREGLPEIVARVLAGRGVAPEDCAAYLA 63 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 PS++ LMPDP ++TD +KAA R+ QAI EKI +FGDYDVDGA S AL+ RF Sbjct: 64 PSLKTLMPDPRVVTDMEKAATRVAQAIMAGEKIAVFGDYDVDGATSSALLQRFFRAAGSE 123 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +YIPDRI +GYGPN + + +EG L+ITVDCG+ ++ AL A + G+ IV+DHH Sbjct: 124 LRIYIPDRIREGYGPNAPALLRLKDEGIDLVITVDCGTMAHKALGLAADAGLPSIVVDHH 183 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240 Q + PAYALVNPNRLDD SG G L A GV FL +V R LR+ DL+ Sbjct: 184 QAEPALPPAYALVNPNRLDDESGLGQLAAVGVAFLFVVATNRALREAGWYATRPEPDLMQ 243 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LDLVAL T+CDVVPL+GLNRA+V +GL V R+ N GL AL + ++ + G++ Sbjct: 244 WLDLVALGTICDVVPLLGLNRAFVAQGLRVMARRQNIGLAALGDVARLNGAPVPYHCGFL 303 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP +NAGGR+G+++LG+RLL ++D +E +A +L+V+N R+ +E+ +LE+A +V Sbjct: 304 LGPRVNAGGRVGKADLGARLLTTEDVEEARAIAEELNVMNGERQAIEAQVLEEALTQVDE 363 Query: 361 QC---DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 + +I+ G WHPG++G++A+RLK+K+ RPS ++F+ G+G GSGRS+ Sbjct: 364 RLSAARANTLPPIIIASGHGWHPGVIGIVASRLKDKYERPSLVLAFDGKGEGKGSGRSLT 423 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 G D+G+ V+ A+E G+LV GGGHAMAAGLT+ N L F K + V A Sbjct: 424 GVDLGRAVTAALEAGLLVNGGGHAMAAGLTLREDNLEALEAFLAKRLADDVSAASEARAL 483 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 K+DG L+A L ++L+ AGPYGAGN P FA P+ ++ +V H+++ +D Sbjct: 484 KLDGALSARGATRELYELLQQAGPYGAGNAEPRFAVPSVRVVKADIVGKDHVRVILSGED 543 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 ++AIAFR TPLG LM +HV G L + W+G + QL + DA P Sbjct: 544 GGRIKAIAFRAATTPLGAVLMDKGSGLLHVAGRLSADDWQGRRAVQLTIEDAVPT 598 >gi|319405639|emb|CBI79262.1| single-stranded-DNA-specific exonuclease [Bartonella sp. AR 15-3] Length = 594 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 291/589 (49%), Positives = 388/589 (65%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + L V+ S WV L + IN A AI+QK +PD +ARVL R+V A F+NP Sbjct: 5 RYLLNVQSSACDQAWVDALDMDRINNARAISQKFGLPDQLARVLAARDVDEAEAVAFINP 64 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R+LMPDP +TD D AA R+V+AI N EKI +FGDYDVDGA S AL+ RFL + Sbjct: 65 TLRILMPDPKKITDVDCAAERLVKAIINQEKIAVFGDYDVDGACSAALLARFLHCFGIIV 124 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI++GYGPN M + EGA LIITVDCG+ S DA++ A G DVIV+DHHQ Sbjct: 125 KIYIPDRIIEGYGPNEQAMRGLVQEGASLIITVDCGANSPDAIRAARLAGADVIVLDHHQ 184 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 +++ A ALVNPNR DD S QGHLCAAGVVF+ L+ + R+LR+ DLLS+LD Sbjct: 185 MENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLRKKKWGGALPDLLSMLD 244 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALAT+CDVVPL G+NRA+V KGL VAR NPG+ AL + +I P+ + +LG+++GP Sbjct: 245 LVALATICDVVPLQGVNRAFVNKGLQVARSMYNPGIAALAKVAHIGEPLNSFHLGFLLGP 304 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG LG+ LL +D E + +A +LD LN+ R+ ME L QAE+ + + Sbjct: 305 RINAGGRIGNQALGAYLLSCNDRDEADRIAQELDRLNKERQEMEMIQLAQAESYLDSIYQ 364 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + S V+ WHPGI+G+LAARLKE+F P I+ +EDG GIGSGRSI G ++G Sbjct: 365 EKTIPSPFVIAHKEWHPGIIGILAARLKERFFCPVLVIALKEDGSGIGSGRSISGINLGA 424 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V AV +L KGGGH+MAAG T++ ++ ++ +V L IDG L Sbjct: 425 LVREAVTLNLLEKGGGHSMAAGFTIQSTKIEAFREWLEEKVSLMVSQLRAKKSLSIDGFL 484 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +AS N L DM+E AGP+G+GN PVFAFP+H+L + V HL++ + + E LQ Sbjct: 485 SASGANKDLFDMIEKAGPFGSGNAIPVFAFPSHRLVKLYEVGKGHLRLIISNIEGEKLQG 544 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF GTPLG+FL ++ GK +H+ G+L +N+WRG+ QLRV+DA+ V Sbjct: 545 IAFGAVGTPLGQFLFENIGKTIHLAGNLSLNHWRGNISPQLRVIDAAAV 593 >gi|49474261|ref|YP_032303.1| single-stranded-DNA-specific exonuclease [Bartonella quintana str. Toulouse] gi|49239765|emb|CAF26152.1| Single-stranded-DNA-specific exonuclease [Bartonella quintana str. Toulouse] Length = 594 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 291/587 (49%), Positives = 389/587 (66%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 FL V+ S G W+ L +GIN A AI+QK PD +ARVL R+V A F+NP++ Sbjct: 7 FLNVQSSACGQAWLDALDLKGINNARAISQKFGFPDALARVLSARDVDESEAVAFINPTL 66 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 R LMPDP D AA RIV+AI N EK+ +FGDYDVDGA S AL+ RFL + + + Sbjct: 67 RTLMPDPESFMDMQCAAERIVKAILNQEKVAVFGDYDVDGACSSALIARFLRYFEIEVKI 126 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 YIPDRI++GYGPN M + +GA LIITVDCG+ S DA++ A +G DV+V+DHHQ+ Sbjct: 127 YIPDRIIEGYGPNEQAMRMLVQKGAHLIITVDCGANSPDAVRAARLEGADVVVLDHHQMT 186 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A ALVNPNR DD SGQGHLCAAGVVF+ L + +LR+ DLLS+LDLV Sbjct: 187 EVHQEAVALVNPNRPDDFSGQGHLCAAGVVFVTLAWVNHLLRKKKFGEKLPDLLSMLDLV 246 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 ALAT+CDVVPL G+NRA+VVKGL VAR N G+ AL + I P+ + +LG+++GP I Sbjct: 247 ALATICDVVPLQGVNRAFVVKGLQVARSMHNFGIAALTKVARIDEPLNSFHLGFLLGPRI 306 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NAGGRIG+ LG+RLL +D E + +A +LD LNQ R+ ME L QAE+ + + + Sbjct: 307 NAGGRIGDQALGARLLCCEDKDEADKIAERLDRLNQERQEMEGVQLAQAESYIDSLYQER 366 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + IV+ WHPGI+G+LA+RLKE+F P F+I+ +EDG G+GSGRSI+G D+G +V Sbjct: 367 ETPMSIVIAHQEWHPGIIGILASRLKERFFCPVFSIALKEDGSGVGSGRSIDGIDLGALV 426 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 AV +L KGGGH+MAAG+T++ ++ +K +V L IDG L+A Sbjct: 427 REAVMLNLLEKGGGHSMAAGITIQSTKIEIFREWLEKKVSLMVSRLRAKKSLSIDGCLSA 486 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 S N AL DM+E AGP+G+GN PVF P+H+L ++ V HL++ + + + LQ IA Sbjct: 487 SGANKALFDMIEKAGPFGSGNTTPVFVLPSHRLINLCEVGKGHLRLVISNMEGKKLQGIA 546 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 FR GTPLG FL ++ G+ +HV G+L +NYW G+ QLRV+DA+ V Sbjct: 547 FRAMGTPLGYFLSENIGEMIHVAGNLSLNYWNGTINPQLRVIDAAAV 593 >gi|218463397|ref|ZP_03503488.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli Kim 5] Length = 600 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 341/591 (57%), Positives = 430/591 (72%), Gaps = 1/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S RWV+ L Q G NRALA++Q H +PD++ARVL R V +D A +FL+P Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQVHGLPDLIARVLAGRGVPVDEAIEFLDP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP LTDC+KAA R+++AI E + IFGDYDVDGAAS ALM RFLSH V Sbjct: 70 TIRSLMPDPHTLTDCEKAATRLMRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGVKT 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 N+YIPDRI +GYGPNP+ + + I+ GA+LI+TVDCGSTS++AL A + IDV+VIDHHQ Sbjct: 130 NIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V E P +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR L DLL L Sbjct: 190 VTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKGILAIDLLQWL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL + ++ P+T + G++IG Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E EM+A +LD LN+ R+ M++ ML++AEA+ L + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAGEAEMIAQRLDELNRERQAMDAVMLQEAEAEALAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + ASVIV ++WHPGIVGL+AARLKEKF RP+FAI+F+ G+G GSGRSI GFD+G Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 KMV AV+EG+LV GGGHAMAAGLTVER + GRL FF + A V L KIDG Sbjct: 430 KMVRAAVDEGLLVTGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLAANETLKIDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + LID LE+AGPYG+G+ P+FA P H+++ R+V H+++T E+ D L Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLD 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAFR T LG L+ SRG +HV G L +++G++R QLRV DA+P + Sbjct: 550 GIAFRAADTALGNLLVNSRGASLHVAGTLGAEHYQGARRLQLRVCDAAPAK 600 >gi|325292975|ref|YP_004278839.1| single-stranded-DNA-specific exonuclease [Agrobacterium sp. H13-3] gi|325060828|gb|ADY64519.1| single-stranded-DNA-specific exonuclease [Agrobacterium sp. H13-3] Length = 602 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 338/588 (57%), Positives = 432/588 (73%), Gaps = 1/588 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFL VE S + RWVS L Q NRALA++Q HAIP+++ARVL R V +D A FL+P Sbjct: 12 RAFLSVERSATEQRWVSRLDQAAQNRALAMSQIHAIPELIARVLAGRGVGVDEALAFLDP 71 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP +LTDC+KAA R+V+AI EK+ IFGDYDVDGAAS ALM RFL+H + Sbjct: 72 TIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIFGDYDVDGAASSALMYRFLAHFGLTP 131 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP+ M++ GA LI+TVDCGSTS+++L A + G DV+VIDHHQ Sbjct: 132 KIYIPDRIFEGYGPNPAAMQQLAANGATLILTVDCGSTSHESLNAAKDAGTDVVVIDHHQ 191 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR-QDNKVPLNFDLLSLL 242 V SE PA ALVNPNR DDLSGQGHLCAAGVVFLVLV R+L+ + N+ DLL+LL Sbjct: 192 VGSELPPAVALVNPNREDDLSGQGHLCAAGVVFLVLVATLRLLKDRRNRQAFTIDLLALL 251 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR N GL AL + + P+T + G++IG Sbjct: 252 DIVALATVCDVVPLKGLNRAYVVKGLIAARHMNNAGLAALFRKAGLGGPVTPYHFGFLIG 311 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DDS + +++A KLD LN+ R+ ME+ ML +AEA+ L + Sbjct: 312 PRINAGGRIGDAALGSRLLTLDDSSQADVIAEKLDELNRERQAMEAVMLAEAEAEALYEY 371 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D A VIV + WHPGIVGLLA+RLK++F RP+FAI+F+ GKG GSGRSI GFD+G Sbjct: 372 GDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMG 431 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AV+ G+LVKGGGHAMAAGLTVER N G+L FF++ A V L+ + V KIDG Sbjct: 432 RMVRAAVDAGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVSELVESSVLKIDGA 491 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + L+D LE AGPYG+G+ P+FA P H+L+ +R+V +H+++T E+ D L Sbjct: 492 IGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTSHVKITLEAMDGSRLD 551 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAFR PLG+ L+ +RG+ +HV G + + W+G +R QLRVLDA+ Sbjct: 552 GIAFRAAEAPLGQMLLNARGRSIHVAGTVGADLWQGQRRVQLRVLDAA 599 >gi|15888900|ref|NP_354581.1| single-stranded-DNA-specific exonuclease [Agrobacterium tumefaciens str. C58] gi|15156672|gb|AAK87366.1| single-stranded-DNA-specific exonuclease [Agrobacterium tumefaciens str. C58] Length = 602 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 342/588 (58%), Positives = 435/588 (73%), Gaps = 1/588 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFL VE S + RWVS L Q G NRALA++Q HAIP+++ARVL R V +D A FL+P Sbjct: 12 RAFLSVERSATEQRWVSRLDQAGQNRALAMSQIHAIPELIARVLAGRGVGVDDALAFLDP 71 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP +LTDC+KAA R+V+AI EK+ IFGDYDVDGAAS AL RFL+H + Sbjct: 72 TIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIFGDYDVDGAASSALTYRFLAHFGLTP 131 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP+ M++ GA LI+TVDCGSTS+++LQ A + G DV+VIDHHQ Sbjct: 132 EIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTSHESLQAAKDAGTDVVVIDHHQ 191 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR-QDNKVPLNFDLLSLL 242 V +E PA ALVNPNR DDLSGQGHLCAAGVVFLV+V R+L+ + N+ DLLSLL Sbjct: 192 VGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVMVATLRLLKDRRNRQAFTLDLLSLL 251 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR N GL AL ++ + P+T + G++IG Sbjct: 252 DIVALATVCDVVPLKGLNRAYVVKGLIAARHMNNAGLAALFKKAGLGGPVTPYHFGFLIG 311 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E E++A KLD LN+ R+ ME+AML +AEA+ L + Sbjct: 312 PRINAGGRIGDAALGSRLLTIDDTTEAEVIAEKLDELNRERQAMEAAMLAEAEAEALYEY 371 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D A VIV + WHPGIVGLLA+RLK++F RP+FAI+F+ GKG GSGRSI GFD+G Sbjct: 372 GDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMG 431 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AVE G+LVKGGGHAMAAGLTVER N G+L FF++ A V L+ + V KIDG Sbjct: 432 RMVRAAVETGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVESSVLKIDGA 491 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + L+D LE AGPYG+G+ P+FA P H+L+ +R+V AH+++T E+ D L Sbjct: 492 IGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTAHVKITLEAMDGSRLD 551 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAFR PLG+ L+ +RG+ +HV G + + W+G +R QLRVLDA+ Sbjct: 552 GIAFRAAEAPLGQMLLNARGRNIHVAGTVGADLWQGQRRVQLRVLDAA 599 >gi|116251859|ref|YP_767697.1| single-stranded-DNA-specific exonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115256507|emb|CAK07591.1| putative single-stranded-DNA-specific exonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 586 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 337/586 (57%), Positives = 431/586 (73%), Gaps = 1/586 (0%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68 +E S RWV+ L Q G NRALA++Q H +PD++ARVL R V++D A +FL+P+IR L Sbjct: 1 MEKSALDNRWVARLDQAGQNRALAMSQIHGLPDLIARVLAGRGVTVDEAIEFLDPTIRSL 60 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 MPDP LTDC+KAA R+++AI E + IFGDYDVDGAAS ALM RFLSH V A +YIP Sbjct: 61 MPDPHKLTDCEKAATRLLRAIERGESVAIFGDYDVDGAASSALMFRFLSHFGVRATIYIP 120 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 DR+ +GYGPNP+ + + ++ GAQLI+TVDCGSTS++AL A + IDV+VIDHHQV E Sbjct: 121 DRVFEGYGPNPAAINQLVDNGAQLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQVTHEL 180 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVAL 247 P +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR L DLL LD+VAL Sbjct: 181 PPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILAIDLLQWLDIVAL 240 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 ATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL+ + ++ P+T + G++IGP INA Sbjct: 241 ATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALLRKAGLAGPVTPYHFGFLIGPRINA 300 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIG++ LGSRLL DD+ E +++A +LD LN+ R+ ME+ ML++AEA+ L + D + Sbjct: 301 GGRIGDAALGSRLLTLDDAGEADVIAQRLDELNRERQAMEAIMLQEAEAEALAEYGDGEG 360 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ASVIV ++WHPGIVGL+AARLKEKF RP+FAI+F+ G+G GSGRSI GFD+G+MV Sbjct: 361 ASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMGRMVRA 420 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 AV+EG+LVKGGGHAMAAGLTVER N GRL FF + A V L+ KIDG + AS Sbjct: 421 AVDEGLLVKGGGHAMAAGLTVERANLGRLRTFFTEKAERTVAGLVANETLKIDGAIGASG 480 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 + LID LE+AGPYG+G+ P+FA P H+L+ R+V H+++T E+ D L IAFR Sbjct: 481 ATLELIDRLEAAGPYGSGHAQPLFAVPAHRLRDARLVGEKHVKVTLEAMDGSRLDGIAFR 540 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 TPLG L+ SRG +HV G L ++++G++R QLRV DA+P + Sbjct: 541 AADTPLGNLLINSRGASLHVAGSLGADHYQGARRIQLRVCDAAPAK 586 >gi|209549146|ref|YP_002281063.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534902|gb|ACI54837.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 600 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 340/591 (57%), Positives = 433/591 (73%), Gaps = 1/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S RWV+ L Q G NRALA++Q H +PD++ARVL R V+ D A +FL+P Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQIHGMPDLIARVLAGRGVTADEAIEFLDP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP ILTDC++AA R+V AI E + IFGDYDVDGAAS ALM RFL+H V A Sbjct: 70 TIRGLMPDPHILTDCERAATRLVSAIERGENVAIFGDYDVDGAASSALMFRFLTHFGVKA 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 N+YIPDR+ +GYGPNP+ M + I+ GA+LI+TVDCGSTS++AL+ A + IDV+VIDHHQ Sbjct: 130 NIYIPDRVFEGYGPNPAAMNQLIDNGARLIVTVDCGSTSHEALEAAAARSIDVVVIDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V E +ALVNPNR DDLSGQGHLCAAGVVF+VLV R+LR L DLL L Sbjct: 190 VTHELPHCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRASGNKGILALDLLQWL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 D+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL + ++ P+T + G++IG Sbjct: 250 DIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E E++A +LD LN+ R+ ME+ ML++AEA+ L + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDTGEAEVIAQRLDELNRERQAMEAIMLQEAEAEALAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D + ASVIV ++WHPGIVGL+AARLKEKF RP+FAI+F+ G+G GSGRSI GFD+G Sbjct: 370 GDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +MV AV+EG+LVKGGGHAMAAGLTVER + GRL FF + + V L+ KIDG Sbjct: 430 RMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKSARTVANLVANETLKIDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + AS + LID LE+AGPYG+G+ P+FA P H+++ R+V H+++T E+ D L Sbjct: 490 IGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTMEAMDGSRLD 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAFR T LG L+ SRG +HV G L +++G++R QLRV DA+P + Sbjct: 550 GIAFRAADTALGNLLINSRGASLHVAGALGAEHYQGARRIQLRVCDAAPAK 600 >gi|288957790|ref|YP_003448131.1| single-stranded-DNA-specific exonuclease [Azospirillum sp. B510] gi|288910098|dbj|BAI71587.1| single-stranded-DNA-specific exonuclease [Azospirillum sp. B510] Length = 616 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 251/599 (41%), Positives = 357/599 (59%), Gaps = 11/599 (1%) Query: 1 MND-QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD 59 M + AFL V S+SG RW + E +A A+TQ +P+IV RVL R V+ + + Sbjct: 19 MTEPAAFLNVANSLSGKRWQARPCDE--RQAQALTQGRGLPEIVGRVLAARGVTEESCET 76 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FLNP+++ L+PDP D D AA RI +AI + E + +FGDYDVDGA S AL+ RF Sbjct: 77 FLNPTLKALLPDPSRFRDMDPAAERIARAIRDGEPVAVFGDYDVDGATSAALLRRFFRAL 136 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 + +Y+PDRI +GYGPN + + + EG +L++TVDCG +++ AL+ A ++V+V+ Sbjct: 137 GADIRVYVPDRIKEGYGPNAAALLRLKGEGVRLVVTVDCGISAFAALEAAAEAELEVVVL 196 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FD 237 DHH + PA ALVNPNRLD+ LCAAGV F+ +V + R LR + Sbjct: 197 DHHAAEPRLPPAVALVNPNRLDEDGAYRTLCAAGVTFITIVAVNRALRTSGFYRDRAEPN 256 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 L+ LDLVAL TVCDVVPL GLNRA V +GL V R+ NPGL AL + + A + Sbjct: 257 LMEWLDLVALGTVCDVVPLTGLNRALVAQGLKVMARRANPGLAALSDVAGVKEKPDAYHA 316 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 GY++GP +NAGGR+G S+LG+RLL +DD E LA +L+ N RR +E A+L++A + Sbjct: 317 GYVLGPRVNAGGRVGASDLGARLLSTDDPVEAMELAQRLEGHNAERRAVEQAVLDEALER 376 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----KGIGSG 413 V T+ + ++ V G WHPG++G++AARLKE++ RP+ ++ EE G SG Sbjct: 377 VATEAGR--ETDLVFVTGAGWHPGVIGIVAARLKERYSRPACVVALEETADGTLIGKASG 434 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RS+ G D+G V A +EG+L+ GGGH MAAG TV L DF V A Sbjct: 435 RSVRGVDLGAAVIAARQEGLLLAGGGHRMAAGFTVAGDKIDALRDFLHGRISEQVAAAPL 494 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 P+ ++DG L+ ++ L+ ML+ GPYG GN P FA + ++ VV H++ Sbjct: 495 VPMLELDGALSVGGASVGLVTMLDKLGPYGTGNSEPRFAIADARVVRADVVGANHVRCIL 554 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + D L+AIAFR + +G+ L+ RG H+ G L ++ W GS+ QL + DA+P Sbjct: 555 QGNDGARLKAIAFRALDSDMGQALLTGRGTPFHLAGVLRIDRWNGSEGVQLLIDDAAPA 613 >gi|222148683|ref|YP_002549640.1| single-stranded-DNA-specific exonuclease [Agrobacterium vitis S4] gi|221735669|gb|ACM36632.1| single-stranded-DNA-specific exonuclease [Agrobacterium vitis S4] Length = 600 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 336/591 (56%), Positives = 430/591 (72%), Gaps = 1/591 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 ++AFL VE S+SG RWVS L Q G+NR+LAI Q H IPD+VARVL R V++ A+ FL+ Sbjct: 9 ERAFLNVETSVSGQRWVSRLDQAGLNRSLAIAQVHGIPDLVARVLAGRGVAVADAQAFLD 68 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP LTD DKAA R+V AI SE++ IFGDYDVDGAAS AL+ RFL+H + Sbjct: 69 PTIRDLMPDPSSLTDGDKAADRLVAAIMRSERVAIFGDYDVDGAASSALLWRFLAHFGIE 128 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 A +YIPDRI +GYGPN + + I GAQLI+TVDCGSTS++AL+ A +G+DV+VIDHH Sbjct: 129 AEIYIPDRIFEGYGPNAVAIGQLIERGAQLIVTVDCGSTSHEALEEARRRGVDVVVIDHH 188 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSL 241 Q+ + ALVNPNR DDLSGQGHLCAAGVVF+VLV R LR+ DLL+ Sbjct: 189 QMGQDLPACLALVNPNRSDDLSGQGHLCAAGVVFMVLVGTLRKLREAGHGAARSLDLLAW 248 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVALATVCDVVPL GLNRAYVVKGL+ AR Q N GL AL++ I P+T + G+++ Sbjct: 249 LDLVALATVCDVVPLKGLNRAYVVKGLIAARHQQNAGLAALLKIAGIGGPVTPYHFGFLV 308 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LGSRLL DD+ E + +A +LD LN+ R+ ME+ ML +AEA+ + + Sbjct: 309 GPRINAGGRIGDAALGSRLLTLDDAAEADEIAAQLDDLNRQRQAMEAQMLAEAEAEAMAE 368 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + A+VI+ + WHPGIVGLLAARLKE+F RP+FAI+F+ GKG GSGRSI GFD+ Sbjct: 369 YGTGENAAVILTAREGWHPGIVGLLAARLKERFQRPAFAIAFDGSGKGTGSGRSIAGFDM 428 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 GKMV AV+ G+LVKGGGHAMAAGLTVER N G+L FF + A V AL KIDG Sbjct: 429 GKMVRAAVDNGLLVKGGGHAMAAGLTVERGNLGKLRAFFDEQAQEKVMALSAIRALKIDG 488 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 + AS +ALID+LE+AGPYG+G+ P+FA P H+++ R++ +H+++T E+ D + Sbjct: 489 AVGASGATLALIDLLETAGPYGSGHSQPIFAIPAHRIRDSRLIGTSHVKVTLEAPDGSRI 548 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR TPLG+ L+ RG +HV G L W+G++R Q+R+LDA+P Sbjct: 549 DGIAFRAKETPLGDLLLGRRGDAVHVAGCLGAELWQGTRRIQIRILDAAPA 599 >gi|312115910|ref|YP_004013506.1| single-stranded-DNA-specific exonuclease RecJ [Rhodomicrobium vannielii ATCC 17100] gi|311221039|gb|ADP72407.1| single-stranded-DNA-specific exonuclease RecJ [Rhodomicrobium vannielii ATCC 17100] Length = 609 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 273/595 (45%), Positives = 363/595 (61%), Gaps = 3/595 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 AFLGVE S G +W+ L + + A AI Q+H +P+IV R+L R VS+D D LNP Sbjct: 15 SAFLGVERSARGLKWIERLAPQDAHIAAAIAQRHNLPEIVGRILAARGVSLDEVADVLNP 74 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L PDP TD DKAA RI +AI E+I IFGDYDVDGA+S AL+ RFL+ ++A Sbjct: 75 TLRALCPDPSTFTDMDKAADRIARAIETGERIAIFGDYDVDGASSSALLKRFLAWHGLDA 134 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN + + I +GAQLI+TVDCGSTS++AL A +G++V+V+DHHQ Sbjct: 135 RIYIPDRITEGYGPNGPAIAQLIEDGAQLIVTVDCGSTSFEALDVAAKRGVEVVVVDHHQ 194 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSL 241 V E A+A+VNPNR D LSGQGHLCAAGV FL+ V R LR DLL Sbjct: 195 VNEELPVAHAVVNPNRQDCLSGQGHLCAAGVTFLLCVAAQRRLRAKGAYAKSPAPDLLGW 254 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LD+VALATVCDVVPL G+NRA+VV+GL V R + NPGL+AL + ++ P + LG+++ Sbjct: 255 LDIVALATVCDVVPLSGVNRAFVVQGLKVLRNRRNPGLRALADAAGVNKPPSPYTLGFVL 314 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG+++LG+RLL S+D E +A LD LN+ RR +E +E+A A Sbjct: 315 GPRINAGGRIGDASLGARLLASEDDIETRRIAETLDRLNRERREIEIKTVEEAAAWADRT 374 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFD 420 + A +I+ WH G+VGL A+RL E+F RP S ++D G+ GS RS+ G D Sbjct: 375 LMEDPSAPIIIAGSPSWHKGLVGLAASRLTERFQRPCLIFSQDDDAGESTGSARSVSGVD 434 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 IG V AVE G+ KGGGH MAAG+TV+ L F + P ID Sbjct: 435 IGAAVRGAVEAGVAKKGGGHTMAAGITVDTARLHELAAFLRAALDPAYRVASAAPELAID 494 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 GVL A + LE+AGPYG GNP P F+ + + I+ ++ HL++ + D Sbjct: 495 GVLKPRAATLDFCAQLEAAGPYGQGNPAPRFSLASVRPTMIKEISGGHLRLALQDVDGSQ 554 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + A+AFR T +G L R HV G + + W G R + + D +P Sbjct: 555 ISAVAFRAAQTEIGAALAAGRDLACHVAGRIERDEWGGKSRIEFHIEDVAPANAR 609 >gi|83312829|ref|YP_423093.1| single-stranded DNA-specific exonuclease [Magnetospirillum magneticum AMB-1] gi|82947670|dbj|BAE52534.1| Single-stranded DNA-specific exonuclease [Magnetospirillum magneticum AMB-1] Length = 597 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 253/588 (43%), Positives = 366/588 (62%), Gaps = 8/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGVE S+SG RW++ G E A A+ Q+ A+P++V RVL +R + +D A+ FLNP+ Sbjct: 13 AFLGVERSLSGRRWLARPGDE--RLAQALAQRLALPELVGRVLASRGIGLDEAESFLNPT 70 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L DKA R+V A+ E I IFGDYDVDGA S AL+ L+ A Sbjct: 71 LRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIFGDYDVDGATSSALLRNALADMGAKAR 130 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN + + +EG +++TVDCG+T++DAL+ AT G+D+IV+DHH Sbjct: 131 VYIPDRIKEGYGPNAPALLRLRDEGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHHVG 190 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242 ++ A A++NPNRLD+ S GHL A GV FL+ V + R L+ DL+ L Sbjct: 191 EAALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWYQSRPAPDLMRWL 250 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVAL TVCDVVPL+G+NRA VV+GL V ++ N GL AL + + + LGY++G Sbjct: 251 DLVALGTVCDVVPLVGVNRALVVQGLKVMAKRANVGLAALADVAGVKERPDSYTLGYVLG 310 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +NAGGR+GE+ LG+RL+ +D+ E +A +LD N++R+ +E+ +L A +V T+ Sbjct: 311 PRVNAGGRVGEAELGTRLMSTDNPAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVETRP 370 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 DD ++V G+ WHPG++G++A RLKE++GR + ++ E +G GSGRS+ G D+G Sbjct: 371 DD--GRPLLVAAGENWHPGVIGIVAGRLKERYGRVACVVA-LEGDQGKGSGRSVPGLDLG 427 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + A + G+L GGGHAMAAG TV R L DF + + P+ ++DG Sbjct: 428 SAIIAARQAGLLRAGGGHAMAAGFTVARDKLTALSDFLAERLQAQL-EGDLVPLLELDGA 486 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L+A A I L++ L GP+G+GNP P FA ++ VV H+++ + L+ Sbjct: 487 LDAGAAGIELVETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTGAGGKRLK 546 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AIAFR + +G L+ S G H+ G L V+ W+G+ QL V DA+ Sbjct: 547 AIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVDDAA 594 >gi|46201274|ref|ZP_00055375.2| COG0608: Single-stranded DNA-specific exonuclease [Magnetospirillum magnetotacticum MS-1] Length = 596 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 252/588 (42%), Positives = 370/588 (62%), Gaps = 8/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGVE S+SG RW++ G E A+ + Q+ +P++V RVL +R + +D A+ FLNP+ Sbjct: 12 AFLGVERSLSGRRWLARPGDE--RLAVTLAQRLGLPELVGRVLASRGIGLDEAESFLNPT 69 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L DKA R+V+A+ +E I IFGDYDVDGA S AL+ L+ A Sbjct: 70 LRDLLPDPGHLKGMDKAVERLVKAVTGAETIGIFGDYDVDGATSSALLKNALADMGAKAR 129 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN + + EG ++ITVDCG+T+++ALQ AT G+D+IV+DHH Sbjct: 130 VYIPDRIKEGYGPNAPALLRLKAEGVGVVITVDCGTTAFEALQTATQAGLDMIVVDHHVG 189 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242 ++ A A++NPNRLD+ S GHL A GV FL+ V + R L+ DL+ L Sbjct: 190 EAALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWYQSRPAPDLMRWL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVAL TVCDVVPL+G+NRA VV+GL V ++GN GL AL + + + LGY++G Sbjct: 250 DLVALGTVCDVVPLVGVNRALVVQGLKVMAKRGNVGLAALADVAGVKERPDSYTLGYVLG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +NAGGR+GE+ LG+RL+ ++D+ E +A +LD N++R+ +E+ +L A +V T+ Sbjct: 310 PRVNAGGRVGEAELGTRLMSTEDAAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVETRP 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 DD +++ G+ WHPG++G++A RLKE++GR + ++ E G+G GSGRS+ G D+G Sbjct: 370 DD--GRPLLMAAGENWHPGVIGIVAGRLKERYGRVACVVA-LEGGQGKGSGRSVPGLDLG 426 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + A + G+L+ GGGHAMAAG TV R L DF + + P+ ++DG Sbjct: 427 SAIIAARQAGLLLAGGGHAMAAGFTVARDKLNDLSDFLAERLQAQL-EGDLVPLLELDGA 485 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L+A A I L++ L GP+G+GNP P FA ++ VV H+++ + L+ Sbjct: 486 LDAGAAGIELVETLAQVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLMLTGAGGKRLK 545 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AIAFR + +G L+ S G H+ G L V+ W+G+ QL + DA+ Sbjct: 546 AIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIIDDAA 593 >gi|304391919|ref|ZP_07373861.1| single-stranded-DNA-specific exonuclease RecJ [Ahrensia sp. R2A130] gi|303296148|gb|EFL90506.1| single-stranded-DNA-specific exonuclease RecJ [Ahrensia sp. R2A130] Length = 597 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 290/593 (48%), Positives = 393/593 (66%), Gaps = 2/593 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 D+ FL VE SISG RW + + +A A+ ++H+IP++VARVL R+V+ D A FL+ Sbjct: 5 DRPFLDVESSISGQRWEERMSRTQAGQAEAMRERHSIPELVARVLAARDVTADEALGFLD 64 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P +R LMPDP +LT D AA R+V AI E + +FGDYDVDGA S AL+ FL + V Sbjct: 65 PKLRDLMPDPSLLTGMDAAADRLVSAIAAKEPVAVFGDYDVDGATSSALLAAFLRNFDVP 124 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +YIPDRI +GYGPN + + + GA+L++TVDCGSTS+DAL A + G+D +V+DHH Sbjct: 125 VEIYIPDRIFEGYGPNENAIRELAERGAKLLVTVDCGSTSHDALAVAKSLGLDAVVLDHH 184 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD--LLS 240 QV E ALVNPNR DDLSGQGHLCAAGVVFL LV R +RQ K+P + L+ Sbjct: 185 QVGDELPDVIALVNPNRQDDLSGQGHLCAAGVVFLTLVATQRAMRQQGKLPTDKPVDLMQ 244 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LDLVAL TVCDVVPL GLNRA+V +G+ V ++Q N GL AL P +LG++ Sbjct: 245 SLDLVALGTVCDVVPLKGLNRAFVTRGIEVMQKQRNVGLAALARVARQDGPAAPWHLGFV 304 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRIG++ LG+RLL + D E E +A +LD LN R+ +E+AML QA + Sbjct: 305 LGPRINAGGRIGDAALGARLLTTSDPTEAEEIAQQLDTLNGERQNIETAMLAQAIDEAEA 364 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + + SV+V E D WH G+VGLLA+RLK++F RP+FAI+F+ G+G GSGRSI G D Sbjct: 365 EIGFSEGPSVLVTESDTWHAGVVGLLASRLKDRFNRPTFAIAFDGRGRGQGSGRSIPGCD 424 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G+ V AV+EG+L+KGGGHAMAAG+T+ER G F ++ + V + +ID Sbjct: 425 LGRTVRAAVDEGLLLKGGGHAMAAGITIERDKLGDFRAFMEERLCDDVATARLSRSVRID 484 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L+A + + D L +AGP+GAG+ P+ AFP H L+ VV H++ + S D Sbjct: 485 GALSARGATVEMFDQLAAAGPFGAGHSQPLLAFPRHTLRFSDVVGKGHVRFSIGSADGAE 544 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L+ I+FR TPLG+ L+ RGK MH G L +++RG++R QLR++D + + Sbjct: 545 LRGISFRAVDTPLGDALLDGRGKVMHFAGTLSADFFRGTRRVQLRLVDVALAQ 597 >gi|182678538|ref|YP_001832684.1| single-stranded-DNA-specific exonuclease RecJ [Beijerinckia indica subsp. indica ATCC 9039] gi|182634421|gb|ACB95195.1| single-stranded-DNA-specific exonuclease RecJ [Beijerinckia indica subsp. indica ATCC 9039] Length = 610 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 275/601 (45%), Positives = 376/601 (62%), Gaps = 7/601 (1%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + + FL VE S+ G W L G +ALA+ Q H D+++RVL R ++ + + +L Sbjct: 9 SSRPFLNVERSVQGRVWRDRLDASGQAQALALAQIHGHGDLLSRVLAGRGITPEDCEAYL 68 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +PS+R LMPDP IL D DKAA R+ +AI EKI IFGDYDVDGA+S AL+ + + C Sbjct: 69 DPSLRRLMPDPTILLDMDKAAVRMARAIMAGEKIAIFGDYDVDGASSSALLADYFTACGT 128 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN ++ GA+L++TVDCG+TS++ L A G+D IV+DH Sbjct: 129 PFQIHIPDRIFEGYGPNVDAIQALAAGGAKLLVTVDCGTTSHNPLGEAAKLGLDPIVLDH 188 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238 HQ ++P +VNPNR DDLSG G LCAAGVVF++LV + R LR+ DL Sbjct: 189 HQAP-ADLPEAIIVNPNRQDDLSGLGQLCAAGVVFMLLVALNRRLREQGFFTAERREPDL 247 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L+ LDLVALATV DV PL GLNRA+V KGL V + + GL+AL + A +LG Sbjct: 248 LAFLDLVALATVADVAPLTGLNRAFVTKGLAVMQMRQRAGLRALFDCAGAREAPKAGHLG 307 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 ++IGP INAGGRIG++ LG+RLLI D + E +A +LD LN+ R+++E+ LEQA + Sbjct: 308 FLIGPRINAGGRIGDAALGARLLIERDQIKAEEIARRLDTLNRERQVIEAETLEQALLQA 367 Query: 359 LTQ---CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 + DD + + IV + WHPGIVGL+A RLK+K+ P+FA++F E G G GSGRS Sbjct: 368 EAEQGLQDDAKAGAAIVTASEDWHPGIVGLVATRLKDKYRCPAFAVAFNESGIGTGSGRS 427 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 I G D+G V AVE G+L+KGGGHAMAAG+T+ R + F ++ V A + Sbjct: 428 IAGVDLGHAVREAVEAGLLIKGGGHAMAAGITLVRDHLAAFRAFLEEKLTEAVTAGRSGD 487 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535 +D L AS N AL+ LE AGP+GAGNP PVF P H+L VV H++ E+ Sbjct: 488 ALFVDAALTASGANPALMASLEKAGPFGAGNPEPVFVLPAHRLMDASVVGNGHVRFRAEA 547 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 D ++ IAFR PLG+ L+ RG +MH G L ++ + G +R Q+R+ D +P+ Sbjct: 548 GDGARIEGIAFRSAAEPLGDALLAGRGTKMHFAGTLMLDRFGGRERVQMRLTDLAPLATQ 607 Query: 596 H 596 Sbjct: 608 K 608 >gi|260434121|ref|ZP_05788092.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter lacuscaerulensis ITI-1157] gi|260417949|gb|EEX11208.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter lacuscaerulensis ITI-1157] Length = 580 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 247/589 (41%), Positives = 344/589 (58%), Gaps = 10/589 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FL VE S++G RWV + A + Q+ +P + +VL R V+ A+ FL P Sbjct: 2 SFLSVEHSLTGRRWVGPPPEMD-RAAEMLAQQTDLPRPLCQVLARRGVTPAEAESFLAPK 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D + AA R +QA+ ++I IF DYDVDG +S AL++ +L +NA Sbjct: 61 LRDLLPDPRELKDMETAAARFLQAVRQKQRIAIFADYDVDGGSSAALLIVWLRQMGLNAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN M + LII VDCG+ S+DA+ A G DVIV+DHH Sbjct: 121 LYVPDRIDEGYGPNAPAMAQLAA-THDLIICVDCGTLSHDAIAAAQ--GADVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ +LCAA VVFL+LV R LR DL+++LDL Sbjct: 178 GETLPDCVAVVNPNRQDESGDLAYLCAAAVVFLMLVEAGRQLRAAG--TKGPDLMAMLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G+NRA V +GL V R+ PGL AL + + + + +LG+++GP Sbjct: 236 VALATVADVAPLVGVNRALVQQGLKVMARRQRPGLVALSDVARMDTAPNSYHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +D E E LA +LD LN RR +E+A+ A A+ + D Sbjct: 296 VNAGGRIGQADLGARLLSTDSPAEAEALAKRLDALNTERRDIENAVRAAALAQAEDRGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ GD WHPG+VG++A+RLKE RP+ I F + +G GSGRS+ G D+G Sbjct: 356 ---APLVWAAGDGWHPGVVGIVASRLKETANRPAIVIGF-DGDEGKGSGRSVSGVDLGAA 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+LVKGGGH MAAGLTV R + K+DGVL Sbjct: 412 IHRLASEGLLVKGGGHKMAAGLTVMRDQLEPAMARLSELLAKQGAGEGGPADLKLDGVLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A +ALI+ +E AGP+GAG P P FA P+ +++ + V HL+++ + AI Sbjct: 472 PGAATVALIEQIEQAGPFGAGAPAPRFALPDLQIRFAKRVGETHLKLSLSDGMGGGIDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 AF + P+G+ L G R H G L VN W G + QLR+ DA+ + Sbjct: 532 AFGAFDGPMGDRLANHGGARFHFAGRLEVNTWGGRQSVQLRLEDAAEAK 580 >gi|306844173|ref|ZP_07476766.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO1] gi|306275448|gb|EFM57185.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO1] Length = 594 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 317/590 (53%), Positives = 401/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIERRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSAPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G+ +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGRSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|254714329|ref|ZP_05176140.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M644/93/1] gi|254717228|ref|ZP_05179039.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M13/05/1] gi|261219046|ref|ZP_05933327.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M13/05/1] gi|261322106|ref|ZP_05961303.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M644/93/1] gi|260924135|gb|EEX90703.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M13/05/1] gi|261294796|gb|EEX98292.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M644/93/1] Length = 594 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 318/590 (53%), Positives = 401/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + D ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISDGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|83593743|ref|YP_427495.1| RecJ exonuclease [Rhodospirillum rubrum ATCC 11170] gi|83576657|gb|ABC23208.1| RecJ exonuclease [Rhodospirillum rubrum ATCC 11170] Length = 606 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 250/593 (42%), Positives = 361/593 (60%), Gaps = 9/593 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 D AFLGVE S G RWV G E +ALAI+Q+ +P++V RVL R V ++ A FL Sbjct: 17 DAAFLGVERSRGGRRWVLRPGDE--RQALAISQRLGVPEVVGRVLTGRGVQVEEADGFLT 74 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R L+PDP L D DKA R+ +A+ + E I IFGDYDVDGA S ALM RF Sbjct: 75 PTLRALLPDPGHLLDMDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLGAR 134 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDR+++GYGPN +E +GA++++TVDCG +++DAL+ A G+DV+V DHH Sbjct: 135 VLIHIPDRVLEGYGPNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHH 194 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDL 238 + ++E A A+VNP RLD+ S HL A GV FL+ V I R LR DL Sbjct: 195 EARTELPAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDL 254 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 ++LLDLVAL TVCD+VPLIG+NRA V +GL V ++ NPG+ AL E + + A +LG Sbjct: 255 MALLDLVALGTVCDMVPLIGVNRALVQQGLKVIAKRTNPGIAALAEVSGVRDRVDAFHLG 314 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +M+GP +NAGGR+G++ +G+ LL S+D E A +LD N R+ +E+A+L QA +V Sbjct: 315 FMLGPRVNAGGRVGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQV 374 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 + ++ G WHPG+VG++A+RLKE++G P+ A++ + G GSGRS+ G Sbjct: 375 --EAAPANDLPLVFASGTDWHPGVVGIVASRLKERYGLPACAVA-LDGGLAKGSGRSVGG 431 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+G++V A E G+L GGGHAMAAG ++ F + + V AL Sbjct: 432 VDLGRVVIAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLD 491 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 +DGVL+ N L+ L AGPYG+GNP P FA N ++ + VV + H++ Sbjct: 492 LDGVLDVRGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSG 551 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 +L+A+AF+ + +G L+ + G +HV G L ++ ++G + L V D +P Sbjct: 552 GSLKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVDDVAP 604 >gi|110633344|ref|YP_673552.1| exonuclease RecJ [Mesorhizobium sp. BNC1] gi|110284328|gb|ABG62387.1| exonuclease RecJ [Chelativorans sp. BNC1] Length = 594 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 307/587 (52%), Positives = 395/587 (67%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + FLGV S G W L G N AL I Q H +P+IVARVL R V+++ A+ FL P Sbjct: 6 RYFLGVRQSARGVSWEHRLDSRGENVALGIAQSHGVPEIVARVLAGRGVALEEAERFLTP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 SIR L+PDP LTD +KAARRI A++ E++ IFGDYDVDGA S A++ RFL+H V A Sbjct: 66 SIRDLLPDPAGLTDMEKAARRIADAVHAGERVAIFGDYDVDGAVSSAILKRFLAHYGVTA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDR+ +GYGPNP M + I GA+LI+TVDCG+ S ++ A G +V+V+DHHQ Sbjct: 126 EIYIPDRLFEGYGPNPDAMRELIRRGAKLIVTVDCGTNSAPSIAAANEMGAEVVVLDHHQ 185 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 V + A A+VNPNR DDLSGQGHLCAAGVVFL LV RILR++ + DLLS+LD Sbjct: 186 VGGDLPEAVAIVNPNREDDLSGQGHLCAAGVVFLALVQTTRILREELRATPPPDLLSMLD 245 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATVCDVVPL+G+NRA+V KGL+ AR+ PGL AL I P+ +LG+++GP Sbjct: 246 LVALATVCDVVPLVGVNRAFVAKGLLAARQMRTPGLSALARVARIGEPLNCHHLGFLLGP 305 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG + LGS LL + + E E +A LD LNQ R+ ME+AML +A A+ + Sbjct: 306 RINAGGRIGNAALGSLLLATVEPGEAESIAATLDRLNQERQAMETAMLAEARAEADAELM 365 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 +V+V D WHPGIVGL+A+RLK+ RP+FAI+F+ +G G GSGRSI GFD+G+ Sbjct: 366 SGDGPAVLVTASDTWHPGIVGLIASRLKDHARRPTFAIAFDMNGMGTGSGRSITGFDLGR 425 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V AV EG+LVKGGGHAMAAG+TVER G L FF++ A V L + +ID L Sbjct: 426 LVRDAVSEGLLVKGGGHAMAAGITVERKKLGALRAFFEEKAAGAVSLLRQSESLRIDAAL 485 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +A + L++ LE+AGPYG+G+P PV A P H+L ++V H++ S LQA Sbjct: 486 SAEGATLELLETLEAAGPYGSGHPAPVLALPRHRLADAKLVGNGHIRADLRSLSGARLQA 545 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAFR T LG FL SRG +HV G L VN+W GS+ Q R+ DA+ Sbjct: 546 IAFRAAETDLGNFLFASRGASVHVAGTLAVNHWNGSRSVQFRITDAA 592 >gi|17987011|ref|NP_539645.1| single-stranded-DNA-specific exonuclease RECJ [Brucella melitensis bv. 1 str. 16M] gi|23502146|ref|NP_698273.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis 1330] gi|161619221|ref|YP_001593108.1| single-stranded-DNA-specific exonuclease RecJ [Brucella canis ATCC 23365] gi|163843533|ref|YP_001627937.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis ATCC 23445] gi|225852764|ref|YP_002732997.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis ATCC 23457] gi|254702006|ref|ZP_05163834.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 5 str. 513] gi|254710333|ref|ZP_05172144.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis B2/94] gi|256031827|ref|ZP_05445441.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis M292/94/1] gi|256044911|ref|ZP_05447815.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis bv. 1 str. Rev.1] gi|256113827|ref|ZP_05454620.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis bv. 3 str. Ether] gi|256160006|ref|ZP_05457715.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M490/95/1] gi|256255227|ref|ZP_05460763.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti B1/94] gi|256263751|ref|ZP_05466283.1| phosphoesterase [Brucella melitensis bv. 2 str. 63/9] gi|256369691|ref|YP_003107201.1| single-stranded-DNA-specific exonuclease RecJ [Brucella microti CCM 4915] gi|260565488|ref|ZP_05835972.1| phosphoesterase [Brucella melitensis bv. 1 str. 16M] gi|260566210|ref|ZP_05836680.1| phosphoesterase [Brucella suis bv. 4 str. 40] gi|261222424|ref|ZP_05936705.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti B1/94] gi|261317897|ref|ZP_05957094.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis B2/94] gi|261752573|ref|ZP_05996282.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 5 str. 513] gi|265988926|ref|ZP_06101483.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis M292/94/1] gi|265991339|ref|ZP_06103896.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis bv. 1 str. Rev.1] gi|265995176|ref|ZP_06107733.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis bv. 3 str. Ether] gi|265998391|ref|ZP_06110948.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M490/95/1] gi|17982663|gb|AAL51909.1| single-stranded-DNA-specific exonuclease recj [Brucella melitensis bv. 1 str. 16M] gi|23348109|gb|AAN30188.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis 1330] gi|161336032|gb|ABX62337.1| single-stranded-DNA-specific exonuclease RecJ [Brucella canis ATCC 23365] gi|163674256|gb|ABY38367.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis ATCC 23445] gi|225641129|gb|ACO01043.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis ATCC 23457] gi|255999853|gb|ACU48252.1| single-stranded-DNA-specific exonuclease RecJ [Brucella microti CCM 4915] gi|260151556|gb|EEW86650.1| phosphoesterase [Brucella melitensis bv. 1 str. 16M] gi|260155728|gb|EEW90808.1| phosphoesterase [Brucella suis bv. 4 str. 40] gi|260921008|gb|EEX87661.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti B1/94] gi|261297120|gb|EEY00617.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis B2/94] gi|261742326|gb|EEY30252.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 5 str. 513] gi|262552859|gb|EEZ08849.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti M490/95/1] gi|262766289|gb|EEZ12078.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis bv. 3 str. Ether] gi|263002123|gb|EEZ14698.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis bv. 1 str. Rev.1] gi|263093809|gb|EEZ17814.1| phosphoesterase [Brucella melitensis bv. 2 str. 63/9] gi|264661123|gb|EEZ31384.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis M292/94/1] gi|326409291|gb|ADZ66356.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis M28] gi|326539002|gb|ADZ87217.1| single-stranded-DNA-specific exonuclease RecJ [Brucella melitensis M5-90] Length = 594 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 317/590 (53%), Positives = 400/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|254704547|ref|ZP_05166375.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 3 str. 686] gi|261755231|ref|ZP_05998940.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 3 str. 686] gi|261744984|gb|EEY32910.1| single-stranded-DNA-specific exonuclease RecJ [Brucella suis bv. 3 str. 686] Length = 594 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 317/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPVFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|254719319|ref|ZP_05181130.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. 83/13] gi|265984321|ref|ZP_06097056.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. 83/13] gi|306839094|ref|ZP_07471911.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NF 2653] gi|264662913|gb|EEZ33174.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. 83/13] gi|306405641|gb|EFM61903.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NF 2653] Length = 594 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 316/590 (53%), Positives = 400/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R L+PDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLLPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAVKGASLIVTVDCGTNSAPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARIARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|225627737|ref|ZP_03785774.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti str. Cudo] gi|260168961|ref|ZP_05755772.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. F5/99] gi|261758454|ref|ZP_06002163.1| phosphoesterase [Brucella sp. F5/99] gi|225617742|gb|EEH14787.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ceti str. Cudo] gi|261738438|gb|EEY26434.1| phosphoesterase [Brucella sp. F5/99] Length = 594 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 316/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +L Y+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLRYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|297717882|gb|ADI50084.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Odyssella thessalonicensis L13] Length = 591 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 228/580 (39%), Positives = 335/580 (57%), Gaps = 9/580 (1%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 S+ G RWV + AL + Q H I A +L+ R ++ A FL P++R LMPD Sbjct: 19 SVGGRRWVF--DEVNPREALQLAQNHQISTFAATILLKRGINFQNAASFLQPTLRELMPD 76 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L D R+V+AI + E I +FGDYDVDGA + AL+ R+ ++ +YIP RI Sbjct: 77 PSHLKDLSVGVDRVVKAIQSQETIAVFGDYDVDGATATALLKRYFRDIGISLRVYIPQRI 136 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGP M++ EG ++ VDCG+T++ L+ A G+DVIV+DHH ++ PA Sbjct: 137 EEGYGPTVPAMQQLAKEGTTTLLMVDCGTTAFTPLEAAVQLGMDVIVLDHHVSQASLPPA 196 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALAT 249 A++NPNR+D+ S +LCAAGV F+ LV ++R LR + DL LDLVAL T Sbjct: 197 TAIINPNRIDENSPLTNLCAAGVSFIFLVALHRQLRLEGWFAQRPEPDLRQYLDLVALGT 256 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309 VCDV+ L GLNRA+V +GL V R+ N GL+ L + + +A +LG+++GP INAGG Sbjct: 257 VCDVMTLTGLNRAFVAQGLKVMARRSNHGLRCLADLAGMDDTPSAYHLGFLLGPRINAGG 316 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G + GSRLL + D E + LA +LD+ N+ R+ +E+ +LE+A ++ TQ + + Sbjct: 317 RVGRAEYGSRLLSTLDELEAQQLARELDLYNKERQAIETLVLEEAIHQIETQG--LHRQP 374 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +I+V + WHPG++G++A RLKE++ RP+ + + G GSGRSI G ++G + A Sbjct: 375 LILVGQEGWHPGVIGIVAGRLKERYNRPACVVG-FDADIGKGSGRSIAGVNLGAAMHAAC 433 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 G+L GGGH MAAG TV R F +F + + + P +IDG+L S Sbjct: 434 HHGLLTAGGGHLMAAGFTVMRDQFDNFYNFLKDNLKHQL--ETLEPTLEIDGILTPSGAT 491 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + L+ L+ P+G GNP P F K+ V + H++ T E +D L+A+AFR Sbjct: 492 LDLVHELKRLEPFGNGNPTPKFCIHKAKVTYAEPVGVNHIRCTLEGEDGTRLKAMAFRAL 551 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 TPLG+ +M K + V G L V+ W G + D Sbjct: 552 ETPLGDAIMARSNKSIQVAGTLKVDTWNGRCSVTCFIDDV 591 >gi|306840265|ref|ZP_07473039.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO2] gi|306289792|gb|EFM60974.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. BO2] Length = 594 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 317/590 (53%), Positives = 400/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSAPSITAARQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVLRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|75675837|ref|YP_318258.1| RecJ exonuclease [Nitrobacter winogradskyi Nb-255] gi|74420707|gb|ABA04906.1| exonuclease RecJ [Nitrobacter winogradskyi Nb-255] Length = 613 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 276/591 (46%), Positives = 365/591 (61%), Gaps = 3/591 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 AFLGV S +G W L G RALAI Q+H +P+++ARV+ R V ID DFL+ Sbjct: 13 PDAFLGVSHSATGRLWRDRLDPRGAARALAIAQRHQLPEMLARVIAGRGVDIDAVTDFLD 72 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP +T + AA+RI A E + IFGDYDVDGA S AL+ L HC ++ Sbjct: 73 PTIRRLMPDPFTVTQMETAAQRIADAAMRGETVAIFGDYDVDGATSAALLAWHLRHCGLD 132 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN ++ GA L++TVDCG+TS + L A +G+ V+VIDHH Sbjct: 133 PLIHIPDRIFEGYGPNVDAVDALAGRGATLLVTVDCGTTSIEPLAVARQRGMSVVVIDHH 192 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239 Q + ALVNPNR DDLSG GHL A G+VF+ LV + R LRQ +LL Sbjct: 193 QCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVFITLVALNRELRQRGFWSRERPEPNLL 252 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 +L VAL TV DV PL GLNRA+V KGL+ RR+ + G AL++ +S P A +LG+ Sbjct: 253 DMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVARLSGPPEAWHLGF 312 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ L Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNAERRVIEQTAEAQAEAEAL 372 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + SVIV + WHPG+VGL+A+RLK+KF RP+F ++ E G G GSGRSI G Sbjct: 373 ASLGLEDKGSVIVTASEGWHPGVVGLVASRLKDKFARPAFVVALEPGGIGTGSGRSIGGV 432 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+GK V AV +G+L+KGGGHAMAAG+T+ + + + V I Sbjct: 433 DLGKAVRRAVTDGVLLKGGGHAMAAGVTLRKEQLAEFRAYMETALAADVARSRHVRKLFI 492 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A A + L AGP+GAGNP PV A P+H+L + AHL++ F S D Sbjct: 493 DGAVSARAATPEFVATLNRAGPFGAGNPEPVVALPSHQLIHADEIGQAHLRLRFRSGDGA 552 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + IAFR G PLG L + RG+ +HV G L V+ W+G++R QLRV+D + Sbjct: 553 IVNGIAFRAVGQPLGNALARMRGQPLHVAGSLAVDRWQGAERVQLRVVDVA 603 >gi|294852605|ref|ZP_06793278.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NVSL 07-0026] gi|294821194|gb|EFG38193.1| single-stranded-DNA-specific exonuclease RecJ [Brucella sp. NVSL 07-0026] Length = 594 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 314/590 (53%), Positives = 397/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I +VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISYLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++ LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLHNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNVFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|254461162|ref|ZP_05074578.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales bacterium HTCC2083] gi|206677751|gb|EDZ42238.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacteraceae bacterium HTCC2083] Length = 580 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 243/588 (41%), Positives = 340/588 (57%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 FL VE S++G RWV + + AI Q +P + VL R V+ A FL P+ Sbjct: 3 PFLNVERSLTGRRWVGPDLKV-ARQGEAIAQATGLPAPLCNVLAKRGVTPQDADAFLAPT 61 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+P+P L D +KA RI+ A+ +KI IF DYDVDG S AL++ +L H +A Sbjct: 62 LKDLLPNPRSLRDMEKATARILAAVKARQKIAIFADYDVDGGTSAALIIDWLRHFDQSAT 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M LII VDCG+ S+ + A G DV+V+DHH Sbjct: 122 LYIPDRIDEGYGPNDEAMAMLAA-AHDLIICVDCGTLSHGPITAAV--GADVVVLDHHLG 178 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 PA+A+VNPNR D+ HLCAAGVVFL+LV R LR DN +LL++LDL Sbjct: 179 GETLPPAHAVVNPNRADETGDLAHLCAAGVVFLMLVEAGRQLRIDN--ATGPNLLNMLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VAL TV DV PLIG+NRA V +GL V R+ G+ AL + + + ++ +LG+++GP Sbjct: 237 VALGTVADVAPLIGVNRALVRQGLTVMARRERTGITALADVSRMDTAPSSYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL + D E + +A +LD+LN RR +E+ + A + + D Sbjct: 297 VNAGGRIGKADLGARLLATRDPHEAKAMAERLDMLNTERREIENNVRAAALEQAEERGFD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ G+ WH G+VG++A+RLK+ RP+ I F+ D GSGRSI G D+G Sbjct: 357 E---PLVWAAGEGWHAGVVGIVASRLKDAAHRPAIVIGFDGDAG-KGSGRSISGVDLGAA 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG++ KGGGH MAAGL++ R + ++DG+L Sbjct: 413 IQKLAHEGLIEKGGGHKMAAGLSLSRAQLEPAMARLSELMAKQGAGDAGPADLRLDGMLM 472 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A I LI+ LE AGP+GAG P P FAFP+ +L+ + V HL+++F + AI Sbjct: 473 PGAAQIELIEQLEKAGPFGAGAPAPRFAFPDVELKFTKRVGETHLKISFGDGLGARIDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F TPLG L + GKR H+ G L VN W G + QLR+ DA+P Sbjct: 533 CFGAMDTPLGPALEKHGGKRFHLAGRLEVNSWGGRQNPQLRLEDAAPA 580 >gi|192291166|ref|YP_001991771.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris TIE-1] gi|192284915|gb|ACF01296.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris TIE-1] Length = 613 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 273/593 (46%), Positives = 364/593 (61%), Gaps = 3/593 (0%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGV S +G W L +A A+ Q++ +P+++ARVL R V ID +DFL+P+ Sbjct: 15 AFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLDPT 74 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR LMPDP LT + A+RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 75 IRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPL 134 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 ++IPDRI +GYGPN + +GA L+ITVDCG+TS + L A G+ V+VIDHHQ Sbjct: 135 IHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQC 194 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241 E AL+NPNR DDLSG GHL A G+V + LV + R LR +LL + Sbjct: 195 GDELPDVDALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWTTERPEPNLLDM 254 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 L VAL TV DV PL+GLNRA+V KGL+ RR+ + G AL++ ++ P A +LG+M+ Sbjct: 255 LHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSRLNGPPEAWHLGFML 314 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG ++LG RLL+ D E +A +LD LN RR +E QAEA+ + Sbjct: 315 GPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEAMAS 374 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + +VIV + WHPG+VGL+A+RLKEKFGRPSFAI+ E G G GSGRSI G D+ Sbjct: 375 LGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDL 434 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 GK V AV +G+L+KGGGHAMAAG+T+ + + + V IDG Sbjct: 435 GKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDG 494 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 ++A V L L AGP+GAGNP P+ A P H+L V AHL++ F++ D + Sbjct: 495 AVSARGVTTELAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIV 554 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 IAFR G LG L ++RG+ +HV G L V+ W+G++R QLRV+D + + Sbjct: 555 NGIAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDA 607 >gi|307946821|ref|ZP_07662156.1| single-stranded-DNA-specific exonuclease RecJ [Roseibium sp. TrichSKD4] gi|307770485|gb|EFO29711.1| single-stranded-DNA-specific exonuclease RecJ [Roseibium sp. TrichSKD4] Length = 606 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 282/592 (47%), Positives = 387/592 (65%), Gaps = 3/592 (0%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 + + LGV+ S + W L ++ A+AI+Q+ +PD++ARV+ R V + A+ F Sbjct: 9 IPGRLVLGVQKSFNQNAWRDRLSEDEQRHAMAISQRLGVPDVLARVMAARGVLPESAEAF 68 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L PSI+ LMPDP L D D A R+ AI + + I IFGDYDVDGA S A++ R+L Sbjct: 69 LAPSIKTLMPDPSNLVDMDSAVSRVADAIQSGKNIAIFGDYDVDGATSSAVLARYLRWTG 128 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 ++ ++IPDRI++GYGPN +E GA L++TVDCGSTS+DA + A + G++V+VID Sbjct: 129 IDPVIHIPDRIIEGYGPNGPALEHLKAGGADLLVTVDCGSTSFDAFEVARSVGLNVVVID 188 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDL 238 HHQV ALVNPNR DDLSGQ HL A GV FL +V + R LRQ DL Sbjct: 189 HHQVGETLPKVAALVNPNRQDDLSGQEHLAAVGVTFLFVVGLNRELRQRGFFNGKAAPDL 248 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L+LLDLVAL TVCDVVPL GLNRAYV++GL V ++ NPGL L++ + + +LG Sbjct: 249 LALLDLVALGTVCDVVPLKGLNRAYVMRGLEVMHQRRNPGLAFLVDVARVVGKVAPYHLG 308 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +++GP INAGGRIG++ LG+RLL S+D +A +LD LN R+ ME+ MLEQA+A+ Sbjct: 309 FLLGPRINAGGRIGDAALGARLLTSEDHVTAREIAARLDELNTERQAMEAVMLEQADAQA 368 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 T + + +V++ D WHPGIVGL+A+RLK+ RPSFAI+++E GKG GSGRSI G Sbjct: 369 -TLAIEAKDPAVLLTGSDDWHPGIVGLIASRLKDAHRRPSFAIAYDETGKGTGSGRSIPG 427 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+GK+V AV+EG+L KGGGHAMAAGLTV + L ++F V + K Sbjct: 428 VDLGKVVRKAVDEGLLEKGGGHAMAAGLTVLKDKVEALTEYFDTHLRADVEQTNASRDLK 487 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 IDG L A+ N+ L++MLE AGPYGAG+ PVF FP H++ VV H++ + S D Sbjct: 488 IDGALTATGANLDLMNMLEKAGPYGAGHSEPVFVFPTHRVSFADVVGKGHVRASLASSDG 547 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++AI+F+ P G+ L++ RG+ +HV G L V+ W+G+ R QLR+LD + Sbjct: 548 AKIKAISFKAEDKPHGKALLEKRGQSVHVAGSLSVDTWQGTPRVQLRILDVA 599 >gi|256061347|ref|ZP_05451491.1| single-stranded-DNA-specific exonuclease RecJ [Brucella neotomae 5K33] gi|261325349|ref|ZP_05964546.1| single-stranded-DNA-specific exonuclease RecJ [Brucella neotomae 5K33] gi|261301329|gb|EEY04826.1| single-stranded-DNA-specific exonuclease RecJ [Brucella neotomae 5K33] Length = 594 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 316/590 (53%), Positives = 398/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS+ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVQGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGP P M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QYSIYIPDRIFEGYGPYPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|209885147|ref|YP_002289004.1| single-stranded-DNA-specific exonuclease RecJ [Oligotropha carboxidovorans OM5] gi|209873343|gb|ACI93139.1| single-stranded-DNA-specific exonuclease RecJ [Oligotropha carboxidovorans OM5] Length = 613 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 270/602 (44%), Positives = 374/602 (62%), Gaps = 3/602 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 AFLGV+ S +G W L G +ALAI Q+H +P+++AR++ R + ID +DFL Sbjct: 12 TPHAFLGVKRSATGKLWRDRLDVRGAAQALAIAQRHQLPEMLARIIAGRGIDIDAVEDFL 71 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+IR L+PDP +T + AA+R+ A+ E + IFGDYDVDGA S AL+ L HC + Sbjct: 72 DPTIRKLLPDPSTVTQMEAAAKRLADAVMRGEMVAIFGDYDVDGATSSALLAWHLRHCGL 131 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + ++IPDRI +GYGPN + + GA+L++TVDCG+TS + L A G+DV+VIDH Sbjct: 132 DPLIHIPDRIFEGYGPNVDAIRMLSSRGAKLLVTVDCGTTSLEPLAEARKLGMDVVVIDH 191 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238 HQ E A+VNPNR DDLSG GHL A G+VF+ LV + R LR N +L Sbjct: 192 HQCNDELPTVNAIVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRVRNFWTAERPEPNL 251 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L +L VAL TV DV PL+GLNRA+V KGL+ RR+ + G AL++ ++ P A +LG Sbjct: 252 LDMLHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLG 311 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +M+GP INAGGRIG ++LG +LL+ D E +A +LD LN RRL+E A +QAEA+ Sbjct: 312 FMLGPRINAGGRIGRADLGVQLLLEGDVSEAARIAAELDRLNVERRLIEQAAEQQAEAEA 371 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 L + +VIV + WHPG+VGL+A+RLKEKF RP+FA++ E G G GSGRSI G Sbjct: 372 LAALGLEDKGAVIVTAAEGWHPGVVGLVASRLKEKFSRPAFAVALEPGGIGTGSGRSIAG 431 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+GK V AV EG+L+KGGGHAMAAG+T+++ + + V Sbjct: 432 VDLGKAVRGAVSEGLLMKGGGHAMAAGVTLKKDRLAEFRAYLEGVLAEDVARARHLDELF 491 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 +DG ++A AV + L AGP+G GNP P+ A P+H+L V AHL++ +S D Sbjct: 492 VDGAVSARAVTTDFVATLNRAGPFGTGNPEPMMALPSHQLVYADEVGGAHLRVRLKSGDG 551 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 + IAFR G LG L +RG+ +HV G L ++ W+G++R Q R+ D + E A Sbjct: 552 AFVNGIAFRAVGQKLGNALTDNRGQVVHVAGSLSIDRWQGAERVQFRICDVAVPEREPVA 611 Query: 599 KK 600 + Sbjct: 612 IR 613 >gi|62290177|ref|YP_221970.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 1 str. 9-941] gi|82700099|ref|YP_414673.1| phosphoesterase [Brucella melitensis biovar Abortus 2308] gi|189024412|ref|YP_001935180.1| phosphoesterase, RecJ-like protein [Brucella abortus S19] gi|237815686|ref|ZP_04594683.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus str. 2308 A] gi|254689482|ref|ZP_05152736.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 6 str. 870] gi|254697619|ref|ZP_05159447.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730510|ref|ZP_05189088.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 4 str. 292] gi|256257730|ref|ZP_05463266.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 9 str. C68] gi|260546721|ref|ZP_05822460.1| phosphoesterase [Brucella abortus NCTC 8038] gi|260755005|ref|ZP_05867353.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 6 str. 870] gi|260758221|ref|ZP_05870569.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 4 str. 292] gi|260762048|ref|ZP_05874391.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 2 str. 86/8/59] gi|260884016|ref|ZP_05895630.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 9 str. C68] gi|297248569|ref|ZP_06932287.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 5 str. B3196] gi|62196309|gb|AAX74609.1| RecJ, single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 1 str. 9-941] gi|82616200|emb|CAJ11246.1| Phosphoesterase, RecJ-like:Phosphoesterase, DHHA1:Bacterial RecJ exonuclease [Brucella melitensis biovar Abortus 2308] gi|189019984|gb|ACD72706.1| Phosphoesterase, RecJ-like protein [Brucella abortus S19] gi|237788984|gb|EEP63195.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus str. 2308 A] gi|260095771|gb|EEW79648.1| phosphoesterase [Brucella abortus NCTC 8038] gi|260668539|gb|EEX55479.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 4 str. 292] gi|260672480|gb|EEX59301.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 2 str. 86/8/59] gi|260675113|gb|EEX61934.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 6 str. 870] gi|260873544|gb|EEX80613.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 9 str. C68] gi|297175738|gb|EFH35085.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 5 str. B3196] Length = 594 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 316/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W S Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNASVSPQIQILDAA 591 >gi|316934340|ref|YP_004109322.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris DX-1] gi|315602054|gb|ADU44589.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris DX-1] Length = 613 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 273/593 (46%), Positives = 365/593 (61%), Gaps = 3/593 (0%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGV S +G W L +A A+ Q++ +P+++ARVL R V ID +DFL+P+ Sbjct: 15 AFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLDPT 74 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR LMPDP LT + A+RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 75 IRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPL 134 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 ++IPDRI +GYGPN + +GA L+ITVDCG+TS + L A G+ V+VIDHHQ Sbjct: 135 IHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQC 194 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSL 241 E AL+NPNR DDLSG GHL A G+V + LV + R LR +LL + Sbjct: 195 GDELPEVEALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWSTERPEPNLLDM 254 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 L VAL TV DV PLIGLNRA+V KGL+ RR+ + G AL++ ++ P A +LG+M+ Sbjct: 255 LHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGFML 314 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG ++LG RLL+ D E +A +LD LN RR +E QAEA+ L Sbjct: 315 GPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEALAS 374 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + +VIV + WHPG+VGL+A+RLKEKFGRPSFAI+ E G G GSGRSI G D+ Sbjct: 375 LGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDL 434 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 GK V AV +G+L+KGGGHAMAAG+T+ + + + + V +DG Sbjct: 435 GKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLASDVAKSRHVNELYVDG 494 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 ++A V L L AGP+GAGNP P+ A P H+L V +HL++ F++ D + Sbjct: 495 AVSARGVTPELAATLNRAGPFGAGNPEPIVALPAHQLVYADEVGQSHLRLRFKAGDGAIV 554 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 IAFR G LG L ++RG+ +HV G L V+ W+G++R QLRV+D + + Sbjct: 555 NGIAFRSVGQKLGNALAENRGQTLHVAGCLSVDRWQGAERVQLRVIDVAVPDA 607 >gi|254706557|ref|ZP_05168385.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis M163/99/10] gi|261314016|ref|ZP_05953213.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis M163/99/10] gi|261303042|gb|EEY06539.1| single-stranded-DNA-specific exonuclease RecJ [Brucella pinnipedialis M163/99/10] Length = 594 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 316/590 (53%), Positives = 399/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R S++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGGSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IFGDYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 591 >gi|39935574|ref|NP_947850.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris CGA009] gi|39649427|emb|CAE27949.1| putative single-strand DNA-specific exonuclease [Rhodopseudomonas palustris CGA009] Length = 645 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 273/593 (46%), Positives = 363/593 (61%), Gaps = 3/593 (0%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGV S +G W L +A A+ Q++ +P+++ARVL R V ID +DFL P+ Sbjct: 47 AFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLEPT 106 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR LMPDP LT + A+RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 107 IRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPL 166 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 ++IPDRI +GYGPN + +GA L+ITVDCG+TS + L A G+ V+VIDHHQ Sbjct: 167 IHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQC 226 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241 E AL+NPNR DDLSG GHL A G+V + LV + R LR +LL + Sbjct: 227 GDELPDVDALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWTTERPEPNLLDM 286 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 L VAL TV DV PL+GLNRA+V KGL+ RR+ + G AL++ ++ P A +LG+M+ Sbjct: 287 LHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSRLNGPPEAWHLGFML 346 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG ++LG RLL+ D E +A +LD LN RR +E QAEA+ + Sbjct: 347 GPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEAMAS 406 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + +VIV + WHPG+VGL+A+RLKEKFGRPSFAI+ E G G GSGRSI G D+ Sbjct: 407 LGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGVDL 466 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 GK V AV +G+L+KGGGHAMAAG+T+ + + + V IDG Sbjct: 467 GKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDG 526 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 ++A V L L AGP+GAGNP P+ A P H+L V AHL++ F++ D + Sbjct: 527 AVSARGVTTDLAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKAGDGAIV 586 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 IAFR G LG L ++RG+ +HV G L V+ W+G++R QLRV+D + + Sbjct: 587 NGIAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDVAVPDA 639 >gi|300023047|ref|YP_003755658.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomicrobium denitrificans ATCC 51888] gi|299524868|gb|ADJ23337.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomicrobium denitrificans ATCC 51888] Length = 616 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 286/592 (48%), Positives = 374/592 (63%), Gaps = 6/592 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGV S GF+W L E + A AI Q H +P+++ R+L RNV +D FL+P+ Sbjct: 19 AFLGVRSSARGFQWRERLRPELKSLATAIGQHHGLPEMIGRILAARNVGLDAVPGFLDPT 78 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ LMPDP +L D DKAA R+ AI +++ IFGDYDVDGA S AL+ RFLSH V + Sbjct: 79 LKSLMPDPSVLRDMDKAAARLADAIEGKQRVAIFGDYDVDGACSSALLHRFLSHHDVPSR 138 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDR+ +GYGPN +E +NEGA+LI+TVDCG+TS++ L A G DV+V+DHHQ Sbjct: 139 IYIPDRLFEGYGPNVGAIETLVNEGAKLIVTVDCGTTSFEPLAAARKLGADVVVVDHHQA 198 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLL 242 A+VNPNR DD+SGQG LCAAGVVFLVLV + R LR+ DLL+ L Sbjct: 199 DERLPDVEAVVNPNRQDDISGQGMLCAAGVVFLVLVAVMRELRRRGFYTSVREPDLLASL 258 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALATV DVVPL+ LNRAYV KGL V R + N GL AL + +++P T +LG+++G Sbjct: 259 DLVALATVADVVPLVALNRAYVKKGLAVMRARENVGLTALADVAGLTTPPTPYHLGFILG 318 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG + LG+ LL + D+ E + +A L+ LN+ RR +E+ MLE+A A Q Sbjct: 319 PRINAGGRIGNAALGATLLSTSDTVEAQKIAELLNRLNKERRDVEAIMLEEALAIADQQV 378 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEG 418 D ++++V + WH GIVGL+A+RL E+F RP+ I++E +G GS RSI G Sbjct: 379 ADDPARAMVIVASETWHKGIVGLVASRLVERFRRPACVIAWEAEASRPNEGTGSLRSIPG 438 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+G V AV G+LVKGGGHAMAAGLTV R N L FQ Sbjct: 439 VDLGAAVRAAVSAGLLVKGGGHAMAAGLTVGRNNLAALEAHFQTQLRTATVTANEAAGLD 498 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 ID L AS L+DM+E P+G GNP+P F FP H+++ +VV AH ++ E D Sbjct: 499 IDAALVASGATTELMDMIERVSPFGQGNPDPRFVFPAHRVKFAKVVGDAHARVLIEGGDG 558 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L AIAFR G PLG+ LM G +HV GHL + W G R +L++ DA+ Sbjct: 559 ARLDAIAFRAAGQPLGDLLMSGGGMPLHVAGHLRRDTWGGRDRVELQIEDAA 610 >gi|330814098|ref|YP_004358337.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter sp. IMCC9063] gi|327487193|gb|AEA81598.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter sp. IMCC9063] Length = 584 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 225/589 (38%), Positives = 348/589 (59%), Gaps = 11/589 (1%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68 ++ S+S W+ E + TQ+ + +++ R+L RNV D + DFLNP I+ Sbjct: 2 IKNSVSDRNWILSKFDEN--KVKKATQELGVSEVLCRLLAIRNVEADQSLDFLNPKIKNS 59 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 MP+P +L D+A + I++ I I I+GDYDVDGA+S +++ RFL + + N ++IP Sbjct: 60 MPNPFLLKSMDEAVKLIIKHIKEESHICIYGDYDVDGASSTSILARFLRNFTNNFFIFIP 119 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 DRI DGYGPN + E ++G +LIITVDCG+TS++ ++YA ++ IDV+VIDHHQ Sbjct: 120 DRIQDGYGPNLKIFEDIASKGVKLIITVDCGTTSFEPIEYAKSKNIDVVVIDHHQSTETL 179 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDL 244 A A+VNPNR D+ S +LCAAGV FLVL I LR+++ +LL+ LDL Sbjct: 180 PIANAIVNPNRFDETSNLTYLCAAGVAFLVLSGIVTRLREEDFFKKKNIQEPNLLNYLDL 239 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VAL TVCDVVPL GLNRA+V +GL V +++ N G+K L + NI+S I+ +LGY+IGP Sbjct: 240 VALGTVCDVVPLQGLNRAFVFQGLKVLQKRNNLGIKTLSDVANINSKISTYHLGYIIGPK 299 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG+++ G+ LL+++D + ++ +L+ LN+ R+ +E +LE+A + Sbjct: 300 INAGGRIGKADHGANLLLTEDPEIAFKISKELNQLNEKRKNIEGIILEEAINIAKHK--- 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 V+VV + WH GI+G++A+RLK+ F +P+F I+ E G GS RS+ GFDIG Sbjct: 357 -DNNPVLVVSSNTWHEGIIGIIASRLKDHFNKPTFVIN-FEGDYGKGSARSLPGFDIGSA 414 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 V A + I+ KGGGH MAAG ++ + F + ID VL Sbjct: 415 VVKAKQSEIITKGGGHKMAAGFSINQDKADEFEIFLIDLFNKSGCQSSKEKDLYIDSVLA 474 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 +SAVN + ++ P+G+ N P F N + ++ +H++ ++ ++ + I Sbjct: 475 SSAVNEKFFNEIDKLAPFGSANREPRFVIENVSITKSLILKESHIKAFCKTSNNSKINLI 534 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +F TP+G +L+ ++ K+ + G L +N W G + Q + D + Sbjct: 535 SFNSVNTPIGSYLLNAKNKKYDIAGRLSLNEWNGKREVQFLLDDLAIST 583 >gi|254466495|ref|ZP_05079906.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales bacterium Y4I] gi|206687403|gb|EDZ47885.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales bacterium Y4I] Length = 580 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 242/588 (41%), Positives = 344/588 (58%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S+SG RWV G E + + Q+ +P V +VL R V AK FL P Sbjct: 3 SFLGVEQSLSGRRWVG-PGVEVDRASEMMAQQTGLPRSVCQVLARRGVPAMEAKGFLEPK 61 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R +QA+ ++I +F DYDVDG +S AL++ +L + A Sbjct: 62 LKELLPDPREMKDMEAAAARFLQAVQRKQRIAVFADYDVDGGSSAALLLVWLRQMGLEAT 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M++ LII VDCG+ S++ + A +G DVIV+DHH Sbjct: 122 LYIPDRIDEGYGPNVPAMQELAA-AHDLIICVDCGTLSHEPI--AAAKGADVIVLDHHLG 178 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV R +R+ DL++LLDL Sbjct: 179 GETLPDCVAVVNPNRQDESGDLGYFCAAGVVFLMLVEAGRQMREAG--AKGPDLMALLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG NRA V +GL V + PGL AL + + S + +LG+++GP Sbjct: 237 VALATVADVAPLIGANRALVRQGLKVMAARKRPGLVALSDVSRMDSAPSTYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +D+ E LA +LD LN RR +E+A+ A + + + Sbjct: 297 VNAGGRIGKADLGARLLSTDNPHEAAALAERLDQLNTERRDIENAVRAAALDQAEARGLE 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I F+ + +G GSGRS+ G D+G Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAVVIGFDGE-EGKGSGRSVSGVDLGAS 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+LVKGGGH MAAGLTV R + + K+DG L Sbjct: 413 IQRLAAEGLLVKGGGHKMAAGLTVMRDKLEPAMERLSELLAKQGAGQGGPADLKLDGALM 472 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI +E AGP+GAG P P +A P+ +++ + V +HL+++ + AI Sbjct: 473 PGAATVELIGQIEQAGPFGAGAPAPRYALPDLQVRFAKKVGESHLKLSLSDGMGGGVDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + T LG L++ G R H G L +N W G + QLR+ DA+ Sbjct: 533 CFGAFDTALGPRLLEHGGARFHFAGRLEINTWGGRQSPQLRLEDAAEA 580 >gi|90424310|ref|YP_532680.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris BisB18] gi|90106324|gb|ABD88361.1| exonuclease RecJ [Rhodopseudomonas palustris BisB18] Length = 613 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 278/590 (47%), Positives = 371/590 (62%), Gaps = 3/590 (0%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGV S +G W L G RALAI Q++ +P+++ARVL RNV ID +DFL+P+ Sbjct: 15 AFLGVARSATGRVWRDRLDPRGAARALAIAQRYQLPEMLARVLAGRNVEIDAVEDFLDPT 74 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR L+PDP +T + AA+R+ A+ +E + IFGDYDVDGA S AL+ L HC ++ Sbjct: 75 IRRLLPDPYSVTQMEAAAKRLADAVLGAETVAIFGDYDVDGATSAALLAWHLRHCGLDPL 134 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 ++IPDRI +GYGPN + + GA L+ITVDCG+TS + L A G+ V+VIDHHQ Sbjct: 135 IHIPDRIFEGYGPNVDAVRMLASRGATLLITVDCGTTSLEPLAEAKRLGMSVVVIDHHQC 194 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241 E ALVNPNR DDLSG GHL A G+VF+ LV + R LR +LL++ Sbjct: 195 GDELPVVDALVNPNRPDDLSGLGHLAAVGLVFVTLVALNRELRARGFWTLERPQPELLNM 254 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 L VAL TV DV PL GLNRA+V KGL+ RR+ + G AL++ ++ P A +LG+++ Sbjct: 255 LHHVALGTVADVAPLTGLNRAFVAKGLIAMRRRDHVGHTALMDIARLNGPPDAFHLGFLL 314 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ L Sbjct: 315 GPRINAGGRIGRADLGVRLLLESDISEAAKIAAELDRLNAERRVIEQMAEAQAEAEALAA 374 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + SVIV + WHPG+VGL+A+RLKEKF RP+FAI+ E G G GSGRSI G D+ Sbjct: 375 LGFEDKGSVIVTASEGWHPGVVGLVASRLKEKFSRPAFAIALEPGGIGTGSGRSIPGVDL 434 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 GK V AV +G+L+KGGGHAMAAG+T+ + + + V IDG Sbjct: 435 GKAVRQAVSDGLLLKGGGHAMAAGVTLRKEKLAEFRAYIEAALAADVARSRHANELFIDG 494 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 ++A AV L+ L AGP+G+GNP PV A P+H+L V AHL++ F+S D + Sbjct: 495 AVSARAVTPDLVATLNRAGPFGSGNPEPVLALPSHQLVYADEVGQAHLRLRFKSGDGAIV 554 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 IAFR G LG L ++RG+ +HV G L V+ W+G++R QLRV D + Sbjct: 555 NGIAFRSVGQKLGNALQENRGQPLHVAGCLTVDRWQGNERVQLRVTDVAV 604 >gi|150396665|ref|YP_001327132.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium medicae WSM419] gi|150028180|gb|ABR60297.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium medicae WSM419] Length = 600 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 333/590 (56%), Positives = 435/590 (73%), Gaps = 1/590 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S+SG RWVS L Q G NRALAI+Q H +++ARVL R V +D A FL+P Sbjct: 10 RAFLGVERSVSGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGLDDAGAFLDP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R LMPDP ILTDC KAA R+ AI EKI++FGDYDVDGAAS ALM+RFL H + Sbjct: 70 TLRALMPDPDILTDCRKAAERLADAIRRREKIVVFGDYDVDGAASAALMVRFLRHFDLTT 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP +E+ I+ GA+LI+TVDCGSTS+++ A +G DV+V+DHHQ Sbjct: 130 EIYIPDRIFEGYGPNPQAIEQLIDRGAELIVTVDCGSTSHESFAVAAERGTDVVVVDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLL 242 V S P +ALVNPNR DDLSGQGHLCAAGVV+LVLV R+LR +FDLLSLL Sbjct: 190 VGSTLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLKGDSRVASFDLLSLL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLV+LATVCDVVPL GLNRAYVVKGL+ AR GN GL AL+ + I P+T +LG+++G Sbjct: 250 DLVSLATVCDVVPLKGLNRAYVVKGLIAARHMGNAGLAALLRKAAIGGPVTPYHLGFLLG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD+ E E++A +LD LN++R+ ME+AML +AEA+VL + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDDAAEAEIIAGQLDELNRDRQAMEAAMLAEAEAEVLAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 + ASVI+ + WHPGIVGL+AAR+KEKF RP+FAI+F+ +G+G GSGRSI GFD+G Sbjct: 370 GTGEGASVIITARENWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 ++V AV+ G+L+KGGGHAMAAGLTVER G+L FF++ A V L+ K+DG Sbjct: 430 RLVRAAVDSGLLIKGGGHAMAAGLTVERGKLGQLRQFFEERAETAVRDLVAVQTLKVDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + A+ + L+D+L+ AGPYG+G+P P+FAFP H+L+ R V H+++T E QD ++ Sbjct: 490 MAAAGATLDLVDLLDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGRRIE 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR TPLG FL+ +RG +H G + + W+G+++ QLR+ DA+ Sbjct: 550 GIAFRATETPLGAFLLGNRGATVHAAGSVSADLWQGTRKVQLRLTDAAKA 599 >gi|254693969|ref|ZP_05155797.1| Phosphoesterase, RecJ-like protein [Brucella abortus bv. 3 str. Tulya] gi|261214260|ref|ZP_05928541.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 3 str. Tulya] gi|260915867|gb|EEX82728.1| single-stranded-DNA-specific exonuclease RecJ [Brucella abortus bv. 3 str. Tulya] Length = 594 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 315/590 (53%), Positives = 398/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLGV+ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGVKQSATGQKWVDRLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP L D D AA RI AI E + IF DYDVDGA S ALM RFL H V Sbjct: 63 DPTLRNLMPDPATLNDMDNAAGRIADAIQRRETVAIFSDYDVDGACSSALMARFLKHYGV 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+ Sbjct: 242 MLDLVALATVCDVVPLKGVNRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +AM+LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V AVE+G+LVKGGGHAMAAG+T+ER N G L + ++ A +IV L ID Sbjct: 422 LGKLVRGAVEKGLLVKGGGHAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS +AL + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVALYEALQKAGPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G +HV G+L +N+W S Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGCSVHVAGNLSLNHWNASVSPQIQILDAA 591 >gi|153009250|ref|YP_001370465.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum anthropi ATCC 49188] gi|151561138|gb|ABS14636.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum anthropi ATCC 49188] Length = 594 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 311/590 (52%), Positives = 401/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLG++ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGIKQSATGQKWVDRLGLREANTALAIAQHHGISDLVARVLAGRGVSVENAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP LTD + AA RI AI E + IFGDYDVDGA S ALM RFL H + Sbjct: 63 DPTLRNLMPDPATLTDMENAASRIADAILRRETVAIFGDYDVDGACSSALMARFLKHYGI 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRDLVAKGATLIVTVDCGTNSASSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR+ K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLVQVTKILRERGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LLDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ +LGY+ Sbjct: 242 LLDLVALATVCDVVPLTGVNRAFVVKGLVVARSQSNVGLAALARVARIGEPLNVFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DDS + +A++LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDSATADRIAVELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSIMGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V A+E G+LVKGGGHAMAAG+T+ER N G L + ++ + +IV L ID Sbjct: 422 LGKLVRGAMERGLLVKGGGHAMAAGITIERANLGALRAYLEEESAHIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS ++L + L+ AGPYG+ +P P+ A P+H L +R V H+++ D + Sbjct: 482 GALAASGATVSLYEALQKAGPYGSAHPQPILALPHHILADVRGVGRDHVRVALRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G+ +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGQSVHVAGNLSLNHWNGSVTPQIQILDAA 591 >gi|84515364|ref|ZP_01002726.1| probable single-stranded DNA-specific exonuclease [Loktanella vestfoldensis SKA53] gi|84510647|gb|EAQ07102.1| probable single-stranded DNA-specific exonuclease [Loktanella vestfoldensis SKA53] Length = 586 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 255/590 (43%), Positives = 349/590 (59%), Gaps = 10/590 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 D AFLGV S++G RWV QE A A+ Q +P + R L R V A FL Sbjct: 6 DHAFLGVAASLTGRRWVGPNAQED-RAAEAMVQATNLPPALCRTLARRGVPSQEAALFLA 64 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R L+PDP L D +KAA R +QA+ E+I +F DYDVDG AS AL++ +L + Sbjct: 65 PTLRDLLPDPRSLRDMEKAATRFLQAVAGRERIAVFADYDVDGGASAALLIVWLRQRGLR 124 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 A +YIPDRI +GYGPN M + LII VDCG+ S+ + A DVIV+DHH Sbjct: 125 ATLYIPDRIDEGYGPNEPAMAELAA-AHDLIICVDCGTLSHGPIAAAVRA--DVIVLDHH 181 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 AYA+VNPNR D+ HLCAAGVVFL+LV R LR DL+++L Sbjct: 182 LGGETLPAAYAVVNPNRQDESGDLAHLCAAGVVFLMLVEANRQLRDAG--KAGPDLMAML 239 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALATV DV PL+G+NRA+V +GL+V R+ GL AL + + + TA +LG+++G Sbjct: 240 DLVALATVADVAPLVGVNRAFVRQGLVVMARRARVGLTALADVSGLDAAPTAYHLGFLLG 299 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +NAGGRIG+++LG+RLL SDD E LA LD LN +RR +E A+ + A A+ L + Sbjct: 300 PRVNAGGRIGKADLGARLLASDDPAEARDLADMLDQLNTDRRAVEQAVRDVAIAQALARG 359 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D ++ G+ WHPG+VG++AARLKE RP+ I EDG G GSGRS+ G D+G Sbjct: 360 TDG---PLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIGL-EDGIGKGSGRSVSGIDLG 415 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + EG+L+KGGGH MAAGL+V + + + + ++DG+ Sbjct: 416 AAIQRLASEGLLLKGGGHKMAAGLSVAQDRLEPAMARLAELLDKQGASALGPADLRLDGI 475 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L A + L+ +L+ AGP+GAG P P FAFP+ ++ + V HL+++F + Sbjct: 476 LMPGAATVDLVTLLDDAGPFGAGAPAPRFAFPDCQILFAKQVGETHLKISFGDGLGARID 535 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AI F PLG L+Q G R H+ G + VN W+G + QLR+ DA+P Sbjct: 536 AICFGAMDGPLGPALLQHNGTRFHLAGRIEVNVWQGRQSVQLRLEDAAPA 585 >gi|85717365|ref|ZP_01048317.1| RecJ exonuclease [Nitrobacter sp. Nb-311A] gi|85695840|gb|EAQ33746.1| RecJ exonuclease [Nitrobacter sp. Nb-311A] Length = 613 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 276/592 (46%), Positives = 368/592 (62%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 AFLGV S +G W L Q G RALAI Q+H +P+++ARV+ R V ID DFL+ Sbjct: 13 PDAFLGVSHSATGRLWRDRLDQRGAARALAIAQRHQLPEMLARVIAGRGVEIDAIADFLD 72 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP +T + AA+R+ A E + IFGDYDVDGA S AL+ L HC ++ Sbjct: 73 PTIRRLMPDPSTVTQMETAAKRLADAAMRGETVAIFGDYDVDGATSAALLAWHLRHCGLD 132 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN ++ + GA L++TVDCG+TS + L A +G+ V+VIDHH Sbjct: 133 PLIHIPDRIFEGYGPNVDAIDALADRGATLLVTVDCGTTSIEPLSVARQRGMSVVVIDHH 192 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239 Q + ALVNPNR DDLSG GHL A G+V + LV + R LR+ +LL Sbjct: 193 QCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVLVTLVALNRELRKRGFWSSERPEPNLL 252 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 +L VAL TV DV PL GLNRA+V KGL+ RR+ + G AL++ +S P A +LG+ Sbjct: 253 DMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVARLSGPPEAWHLGF 312 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E A QAEA+ L Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNAERRVIEQAAEAQAEAEAL 372 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + SVIV + WHPG+VGL+A+RLK+KF RP+F ++ E G G GSGRSI G Sbjct: 373 ASLGLEDKGSVIVTASEGWHPGVVGLVASRLKDKFSRPAFVVALEPGGIGTGSGRSIGGV 432 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+GK V AV +G+L+KGGGHAMAAG+T+ + + + V I Sbjct: 433 DLGKAVRRAVTDGVLLKGGGHAMAAGVTLRKEQLAEFRAYMENTLAADVARSRHVRELFI 492 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A + ML AGP+GAGNP P+ A P+H+L V AHL++ F+S D Sbjct: 493 DGAVSARTATPEFVTMLNRAGPFGAGNPEPMVALPSHQLIHADEVGQAHLRLRFKSGDGA 552 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + IAFR G PLG L Q RG+ +HV G L V+ W+G++R QLRV+D + Sbjct: 553 IVNGIAFRAVGQPLGNALAQMRGQPLHVAGSLAVDRWQGAERVQLRVVDVAV 604 >gi|86750079|ref|YP_486575.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris HaA2] gi|86573107|gb|ABD07664.1| exonuclease RecJ [Rhodopseudomonas palustris HaA2] Length = 613 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 270/591 (45%), Positives = 361/591 (61%), Gaps = 3/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 AFLGV S +G W L G +A AI Q++ +P+++ARV+ R + ID DFL+P Sbjct: 14 SAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGRGIEIDAVADFLDP 73 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP +T + A RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 74 TIRKLMPDPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAALLAWHLRHCGLDP 133 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++IPDRI +GYGPN + ++GA L+ITVDCG+TS + L A G+ V+VIDHHQ Sbjct: 134 LIHIPDRIFEGYGPNVDAIRMLADKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQ 193 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLS 240 E AL+NPNR DDLSG GHL A G+V + LV + R LR +LL Sbjct: 194 TADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRGFWTLERPEPNLLD 253 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +L VAL TV DV PLIGLNRA+V KGL+ RR+ + G AL++ ++ P +LG+M Sbjct: 254 MLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEVWHLGFM 313 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ + Sbjct: 314 LGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQHAEAQAEAEAIA 373 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + +VIV + WHPG+VGL+A+RLKEKFGRP+FAI+ E G G GSGRSI G D Sbjct: 374 ALGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVD 433 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G+ V AV EGIL+KGGGHAMAAG+T+ + + + V ID Sbjct: 434 LGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAADVAKSRHVNELSID 493 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G ++A + L AGP+GAGNP PV A P H+L V AHL++ F+S D Sbjct: 494 GAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQAHLRLRFKSGDGAI 553 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + IAFR G LG+ L ++RG +HV G L ++ W+G++R Q RV+D + Sbjct: 554 VNGIAFRSVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVIDVAV 604 >gi|209964606|ref|YP_002297521.1| single-stranded-DNA-specific exonuclease RecJ, putative [Rhodospirillum centenum SW] gi|209958072|gb|ACI98708.1| single-stranded-DNA-specific exonuclease RecJ, putative [Rhodospirillum centenum SW] Length = 601 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 249/595 (41%), Positives = 348/595 (58%), Gaps = 10/595 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 + AFLGV S++G RW + E AL Q +P+IV R+L R V++D DFL Sbjct: 8 ESAFLGVHSSVTGRRWRARPVDE--RLALTFAQSRGLPEIVGRLLAARGVTLDAVDDFLA 65 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 PS+R +PDP +L D D AA RI A+ E I +FGDYDVDGA S AL+ RFL V Sbjct: 66 PSLRTQLPDPSVLRDMDAAAGRIAHAVRTGEGIAVFGDYDVDGATSSALLARFLRALGVE 125 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN + + ++G +L++TVDCG+T++D L A G+DV+V+DHH Sbjct: 126 PRIHIPDRIAEGYGPNLPALLRLRDQGVRLVVTVDCGTTAFDVLDGAAEAGLDVVVVDHH 185 Query: 183 QVKSEEIPAYALVNPNRLDDLS--GQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDL 238 + + ALVNPNRLD+ G L A GV FL++V + R LR+D L Sbjct: 186 KAEPRLPRTVALVNPNRLDEPPGGPLGTLAAVGVTFLLVVAVNRALRRDGFYSGRAEPAL 245 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L LDLVAL TVCDVVPL GLNR +V +GL VA R+ NPG++AL + ++ + G Sbjct: 246 LDWLDLVALGTVCDVVPLTGLNRVFVAQGLKVAGRRANPGIRALADVAGVTDRFDTYHAG 305 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +++GP +NAGGR+G S+LGSR+L +DD E LA +L LN RR +E+ +LE+A A V Sbjct: 306 FIVGPRVNAGGRVGRSDLGSRILSTDDPAEALELARQLHDLNAERRELEAVVLEEALALV 365 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 + +++ G+ WHPG++G++A+RLKE+F RP+ ++ E G G SGRS+ G Sbjct: 366 --EGVAGDSPELVLAAGEGWHPGVIGIVASRLKERFNRPACVVA-LEGGLGKASGRSVRG 422 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITTPVF 477 D+G V A + G+L+ GGGHAMAAG TVE L F ++ + P Sbjct: 423 VDLGAAVIAARQAGLLLAGGGHAMAAGFTVEAARLDDLRAFLRERIGAQLAEAGPLVPTL 482 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 +DG + L+ LE PYG GNP P FA + ++ VV H++ D Sbjct: 483 SLDGAIAVRGAGTDLLQHLERLAPYGTGNPEPRFAVTDARIVRADVVGANHVRCILTGPD 542 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L+ IAFR LGE L++S G +H+ G L + W G + QL + DA+P Sbjct: 543 GARLKGIAFRALDGALGEALLRSGGMPLHLAGTLRADRWNGQEGVQLFIDDAAPA 597 >gi|99082006|ref|YP_614160.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. TM1040] gi|99038286|gb|ABF64898.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. TM1040] Length = 603 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 242/588 (41%), Positives = 347/588 (59%), Gaps = 9/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G RWV G + + + Q+ +P V +VL R V A FL P Sbjct: 25 SFLGVETSLTGRRWVG-PGVDQARASEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQ 83 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R +QA+ E+I IF DYDVDG +S AL++ +L A Sbjct: 84 LKDLLPDPRRMKDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQQAT 143 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN + M + LII VDCG+ S+ + A +G DV+V+DHH Sbjct: 144 LYIPDRIDEGYGPNDAAMAALARDH-DLIICVDCGTLSHGPI--AAAKGADVVVLDHHLG 200 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV + R R + DL+++LDL Sbjct: 201 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQARDKG-LGAGPDLMAMLDL 259 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG NRA V +GL V R+ PGL AL + + + + +LG+++GP Sbjct: 260 VALATVADVAPLIGANRALVRQGLKVMGRRQRPGLVALADVSRMDAAPSTYHLGFLLGPR 319 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +DD E L+ +LD LN RR +E+A+ A + + D Sbjct: 320 VNAGGRIGKADLGARLLSTDDPHEAAALSERLDQLNTERRDIENAVRAAALEQAEARGFD 379 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I + + +G GSGRS+ G D+G Sbjct: 380 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLDGE-EGKGSGRSVSGIDLGAS 435 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV R + + K+DG+L Sbjct: 436 IQKVAMEGLLLKGGGHKMAAGLTVARGQLEPAMARLAELLDKQGAGDLGPADLKLDGMLM 495 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A ++ LI+ +E AGP+GAG P P + FP+ ++ + V +HL+++F + AI Sbjct: 496 PGAASVELIEQIEQAGPFGAGAPAPRYGFPDVAVRFAKRVGESHLKVSFTDGMGGNIDAI 555 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF + T LG L++ G R HV+G L VN W G + QLR+ DA+ Sbjct: 556 AFGAFDTNLGPRLLEHGGARFHVSGRLEVNTWGGRQSAQLRLEDAAEA 603 >gi|91976971|ref|YP_569630.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris BisB5] gi|91683427|gb|ABE39729.1| exonuclease RecJ [Rhodopseudomonas palustris BisB5] Length = 633 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 271/591 (45%), Positives = 362/591 (61%), Gaps = 3/591 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 AFLGV S +G W L G +A AI Q++ +P+++ARV+ R V ID DFL+P Sbjct: 34 SAFLGVTRSATGKLWRDRLDPRGTAKAQAIAQRYQLPEMLARVIAGRGVEIDAVPDFLDP 93 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR LMPDP +T + A+RI A E + IFGDYDVDGA S AL+ L HC ++ Sbjct: 94 TIRKLMPDPSSVTQMEAGAQRIADAAMKRETVAIFGDYDVDGATSAALLTWHLRHCGLDP 153 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++IPDRI +GYGPN + +GA L+ITVDCG+TS + L A G+ V+VIDHHQ Sbjct: 154 LIHIPDRIFEGYGPNVDAIRGLSEKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQ 213 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLS 240 E AL+NPNR DDLSG GHL A G+V + LV + R LR +LL Sbjct: 214 CGDELPEVEALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRGFWTVELPEPNLLD 273 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +L VAL TV DV PLIGLNRA+V KGL+ RR+ + G AL++ ++ P +LG+M Sbjct: 274 MLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPDVFHLGFM 333 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ + Sbjct: 334 LGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQMAEAQAEAEAMA 393 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + +VIV + WHPG+VGL+A+RLKEKFGRP+FAI+ E G G GSGRSI G D Sbjct: 394 SLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVD 453 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G+ V AV EG+L+KGGGHAMAAG+T+ + + + V ID Sbjct: 454 LGRAVRRAVSEGLLMKGGGHAMAAGVTLRKERLAEFRGWLETALAADVAKSRHINELLID 513 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G ++A V L AGP+GAGNP PV A P H+L V AHL++ F+S D Sbjct: 514 GAVSARGVTTEFAATLNRAGPFGAGNPEPVIALPAHQLIYADEVGQAHLRLRFKSGDGAI 573 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + IAFR G LG+ L ++RG+ +HV G L ++ W+G++R QLRV+D + Sbjct: 574 VNGIAFRSVGQKLGQALTENRGQSLHVAGSLSIDRWQGAERVQLRVIDVAV 624 >gi|239832155|ref|ZP_04680484.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum intermedium LMG 3301] gi|239824422|gb|EEQ95990.1| single-stranded-DNA-specific exonuclease RecJ [Ochrobactrum intermedium LMG 3301] Length = 594 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 311/590 (52%), Positives = 401/590 (67%), Gaps = 2/590 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++ FLG++ S +G +WV LG N ALAI Q H I D+VARVL R VS++ A +F+ Sbjct: 3 TERFFLGIKQSATGQKWVDRLGLREANTALAIAQHHGITDLVARVLAGRGVSVEGAPEFV 62 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R LMPDP LTD D AA RI AI E + IFGDYDVDGA S ALM RFL H + Sbjct: 63 DPTLRNLMPDPATLTDMDNAAGRIADAILRRETVAIFGDYDVDGACSSALMSRFLKHYGI 122 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++YIPDRI +GYGPNP M + +GA LI+TVDCG+ S ++ A G DV+V+DH Sbjct: 123 QHSIYIPDRIFEGYGPNPDAMRDLVAKGATLIVTVDCGTNSAPSITAAKQAGADVVVLDH 182 Query: 182 HQV-KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HQV A A+VNPNR DD+S QGHLCAAGVVFL LV + +ILR+ K P DLLS Sbjct: 183 HQVGGDLPEDAVAIVNPNREDDISLQGHLCAAGVVFLTLVQVTKILRERGKGP-GPDLLS 241 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LLDLVALATVCDVVPL G+NRA+VVKGL+VAR Q N GL AL I P+ +LGY+ Sbjct: 242 LLDLVALATVCDVVPLTGVNRAFVVKGLLVARSQSNVGLAALARVSRIGEPLNVFHLGYL 301 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL DD + +A++LD LNQ R+ ME+ ML +AEA+ Sbjct: 302 IGPRINAGGRIGDAGLGARLLTLDDPATADRIAVELDRLNQERQAMEAEMLMEAEAEASL 361 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + ASVIV DRWHPGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D Sbjct: 362 EISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSIMGLD 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK+V A++ G+LVKGGGHAMAAG+T+ER N G L + ++ + +IV L ID Sbjct: 422 LGKLVRGAMDRGLLVKGGGHAMAAGITIERGNLGALRAYLEEESAHIVSRLRENQSLSID 481 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L AS ++L + L+ AGPYG+ +P P+ A P+H L +R V H+++T D + Sbjct: 482 GALAASGATVSLYEALQKAGPYGSAHPQPILALPHHILADVRGVGRDHVRVTLRGADGKR 541 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR LG FL + G+ +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 VNAIAFRAAEGDLGRFLFNNIGQSVHVAGNLSLNHWNGSVTPQIQILDAA 591 >gi|259416462|ref|ZP_05740382.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter sp. TrichCH4B] gi|259347901|gb|EEW59678.1| single-stranded-DNA-specific exonuclease RecJ [Silicibacter sp. TrichCH4B] Length = 580 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 240/585 (41%), Positives = 340/585 (58%), Gaps = 9/585 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G W+ G E + Q+ +P V +VL R V A FL P Sbjct: 2 SFLGVETSLTGRSWIG-PGVEQARAGEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQ 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R +QA+ E+I IF DYDVDG +S AL++ +L A Sbjct: 61 LKELLPDPRRMKDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQQAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M + LI+ VDCG+ S+ + A +G DV+V+DHH Sbjct: 121 LYIPDRIDEGYGPNDEAMAALARDH-DLIVCVDCGTLSHGPI--AAAKGADVVVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV + R R+ + DL+++LDL Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQAREKG-LGAGPDLMAMLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG NRA V +GL V R+ GL AL + + S + +LG+++GP Sbjct: 237 VALATVADVAPLIGANRALVRQGLKVMGRRQRAGLVALADVSRMDSAPSTYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +D+ E LA +LD LN RR +E+A+ A + + D Sbjct: 297 VNAGGRIGKADLGARLLSTDNPHEAAALAERLDQLNTERRDIENAVRAAALEQAEERGFD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I + +G GSGRS+ G D+G Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGL-DGDEGKGSGRSVSGIDLGAS 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV R + + K+DG+L Sbjct: 413 IQKVAMEGLLLKGGGHKMAAGLTVARDQLEPAMARLAELLDKQGAGDLGPADLKLDGMLM 472 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI+ +E AGP+GAG P P + FP+ ++ + V +HL+++F + AI Sbjct: 473 PGAATVELIEQIEQAGPFGAGAPAPRYGFPDLAVRFAKRVGESHLKVSFTDGMGGNIDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AF + T LG L++ G R HV G L VN W G + QLR+ DA Sbjct: 533 AFGAFDTNLGPRLLEHGGARFHVAGRLEVNTWGGRQSAQLRLEDA 577 >gi|114764216|ref|ZP_01443454.1| single-stranded-DNA-specific exonuclease RecJ [Pelagibaca bermudensis HTCC2601] gi|114543368|gb|EAU46384.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. HTCC2601] Length = 581 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 246/590 (41%), Positives = 349/590 (59%), Gaps = 10/590 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 ++LGVE S++G RWV G E +A A+ Q+ +P + +VL V +L P+ Sbjct: 2 SYLGVEASLTGRRWVG-PGVEQERQAEALAQQSNLPRGLCQVLARLGVEAPEVAGYLAPT 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D + AA R++ A+ E+I +F DYDVDG S AL++ +L + A Sbjct: 61 LRDLLPDPRSLRDMETAATRVLAAVKRRERIAVFADYDVDGGTSAALLLDWLHQLGLGAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN MEK + G LII VDCG+ S+ + A +G DV+V+DHH Sbjct: 121 LYIPDRIDEGYGPNEPAMEKLAS-GHDLIICVDCGTLSHGPI--AAAKGADVVVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ HLCAA VVFL+LV R +R+ + DL+++LDL Sbjct: 178 GETLPDCVAVVNPNRQDEDGALAHLCAAAVVFLMLVECGRQMREAGQ--RGPDLMAMLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL G+NRA V +GL V R+ PGL AL + + + ++ +LGY++GP Sbjct: 236 VALATVADVAPLKGVNRALVRQGLAVMARRARPGLVALSDVARLDTAPSSYHLGYVLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG++++G+RLL S D E E LA +LD LN RR +E A+ A A+ + D Sbjct: 296 VNAGGRIGQADIGARLLASRDRHESEALAARLDQLNTERREVEEAVRAAALAQAEARGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE RP+ I + +G GSGRS+ G D+G Sbjct: 356 ---APLVWAAGEGWHPGVVGIVASRLKELTNRPAVVIGL-DGDEGKGSGRSVSGVDLGAS 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +G+L+KGGGH MAAGLTV R + + K+DG+L Sbjct: 412 IQRLAADGLLLKGGGHKMAAGLTVARDGLEAAMERLSELLAKQGAGQGGAADLKLDGLLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A NI L + +E AGP+GAG P P FA P+ ++ + V HL+++F + AI Sbjct: 472 PGAANIELCEQMEQAGPFGAGAPAPRFAMPDVQVGFAKQVGSGHLKVSFGDGLGAKIDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 F + PLG+ L RG+R HV G L +N W G + Q+R+ DA+P EG Sbjct: 532 CFGAFDGPLGQALCDHRGRRFHVAGRLEINEWNGRRSVQMRLEDAAPAEG 581 >gi|114704297|ref|ZP_01437205.1| single-stranded-DNA-specific exonuclease protein [Fulvimarina pelagi HTCC2506] gi|114539082|gb|EAU42202.1| single-stranded-DNA-specific exonuclease protein [Fulvimarina pelagi HTCC2506] Length = 612 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 285/589 (48%), Positives = 375/589 (63%), Gaps = 2/589 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 QAFLGVE S+SG RW + L G ALA++QK I +IVARVL R V + A FL Sbjct: 22 TGQAFLGVERSLSGRRWRAALDARGEGLALAMSQKQGIDEIVARVLAARGVPGEEAHRFL 81 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP +LTD D AA RI AI E++ IFGDYDVDGA+S ALM R+L H + Sbjct: 82 APRLRDLMPDPSVLTDMDAAADRIASAIQKRERVAIFGDYDVDGASSSALMWRYLDHFGI 141 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 A +YIPDR+ +GYGP+ M + + A LIITVDCG+ S+D ++ A G DV+V+DH Sbjct: 142 GARIYIPDRVTEGYGPSVVAMRELAS-EASLIITVDCGTASFDPIEAAKAAGADVVVLDH 200 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241 HQ + A ALVNPNR DD++G GHLCAAGVVF+ LV I R LR+ D+L Sbjct: 201 HQTGPDIPSATALVNPNRQDDVAGLGHLCAAGVVFMTLVAINRALRKRG-YSDLPDILCW 259 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LD+VALATVCDVVPL GLNRA+VV+GL V R N GL AL +S PI +LG+++ Sbjct: 260 LDIVALATVCDVVPLTGLNRAFVVQGLKVMRTMKNVGLAALTRIARLSGPIEPHHLGFLL 319 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LGSRLL D E E LA +LD LNQ R+ ME ML AE +L + Sbjct: 320 GPRINAGGRIGDAALGSRLLCLTDGAEAEALAARLDGLNQERQAMEQVMLRDAEEAILRE 379 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + V+V WH GIVGL+AARLKE+F RP+FAI+F+ GKG GSGRSI G D+ Sbjct: 380 IGTGEGPPVLVTSSGEWHLGIVGLIAARLKERFRRPAFAIAFDGSGKGSGSGRSIAGVDL 439 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G++V AV ++ KGGGHAMAAG+T+ R F ++ A + V IDG Sbjct: 440 GRLVRDAVSHEVIEKGGGHAMAAGITIRRERLSDFRAFIEERALDAVARTRANESLDIDG 499 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 ++AS + L +E+AGP+G G+ PVFA N ++ + +V AH++ T Sbjct: 500 AISASGLLPDLYRAIEAAGPFGQGHETPVFALGNLRVLNADIVGHAHVRATVGGPSGGRA 559 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAF+ TP+GE L++ + +H+ G L ++ +RG ++ +LRV+D + Sbjct: 560 DVIAFKQAETPIGERLLKRSDRPVHIAGSLSLDRFRGQEQVRLRVIDVA 608 >gi|254512010|ref|ZP_05124077.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacteraceae bacterium KLH11] gi|221535721|gb|EEE38709.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacteraceae bacterium KLH11] Length = 580 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 249/588 (42%), Positives = 346/588 (58%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGVE S+SG RWV G E A + Q+ +P V +VL R V A FL P Sbjct: 2 AFLGVEQSLSGRRWVG-PGVEVERAAEMMVQQTDLPRAVCQVLARRGVPAMEATGFLEPR 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP ++ D ++AA R ++A+ N ++I +F DYDVDG +S AL++ +L V A Sbjct: 61 LKELLPDPRLMKDMEQAATRFLEAVRNRQRIAVFADYDVDGGSSAALLLVWLRQMGVQAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN M++ LII VDCG+ S++ + A +G DVIV+DHH Sbjct: 121 LYVPDRIDEGYGPNIPAMQELAA-AHDLIICVDCGTLSHEPI--AAAKGADVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAA VVFL+LV R +R DL++LLDL Sbjct: 178 GETLPDCVAVVNPNRQDESGDLGYFCAAAVVFLMLVEAGRQVRAAG--AKGPDLMALLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG NRA V +GL V R+ PGL AL + + S ++ +LG+++GP Sbjct: 236 VALATVADVAPLIGANRALVRQGLKVMARRQRPGLVALSDVSRMDSAPSSYHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +D E E L+ +LD LN RR +E+A+ A A+ + D Sbjct: 296 VNAGGRIGQADLGARLLSTDSITEAEALSQRLDALNTERREIENAVRAAALAQAEERGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE RP+ I F + +G GSGRSI G D+G Sbjct: 356 ---APLVWAAGEGWHPGVVGIVASRLKEAANRPAIVIGF-DGDEGKGSGRSISGVDLGAS 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+LVKGGGH MAAGLTV R + K+DG L Sbjct: 412 IQRLASEGLLVKGGGHKMAAGLTVMRDQLEPAMARLSELLAKQGAGQSGPADLKLDGTLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 +A + LI+ +E AGP+GAG P P +A P+ +++ + V HL+++ S L AI Sbjct: 472 PAAATVDLIEQIEQAGPFGAGAPAPRYALPDLQVRFAKRVGETHLKLSLSDGMSGGLDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF + PLG+ L G R H G L VN W G + QLR+ DA+ Sbjct: 532 AFGAFDGPLGDRLSNHGGARFHFAGRLEVNSWGGRQSVQLRLEDAAEA 579 >gi|260426541|ref|ZP_05780520.1| single-stranded-DNA-specific exonuclease RecJ [Citreicella sp. SE45] gi|260421033|gb|EEX14284.1| single-stranded-DNA-specific exonuclease RecJ [Citreicella sp. SE45] Length = 579 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 242/588 (41%), Positives = 340/588 (57%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 ++LGVE S++G RWV G E +A A+ Q+ P + VL V +L P Sbjct: 2 SYLGVESSLNGRRWVG-PGVEQERQAEAMAQQTGQPRALCAVLARLGVEPAEVPGYLEPK 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D + AA R ++A+ E+I +F DYDVDG +S AL++ +L A Sbjct: 61 LRELLPDPRGLRDMETAAARFLEAVKRRERIAVFADYDVDGGSSAALLIDWLHQMGREAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M++ LI+ VDCG+ S++ + A + +V+DHH Sbjct: 121 LYIPDRIDEGYGPNVPAMQQLAG-AHDLIVCVDCGTLSHEPIAAAAGADV--VVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ HLCAA VVFL+LV R LR+ DL+S+LDL Sbjct: 178 GETLPDCVAVVNPNRQDEDGTLAHLCAAAVVFLMLVECGRQLREAG--ARGPDLMSMLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG+NRA V +GL V R+ PGL AL + + + ++ +LGY++GP Sbjct: 236 VALATVADVAPLIGVNRALVRQGLAVMARRQRPGLVALSDVARLDTAPSSYHLGYVLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG++++G+RLL S D E E LA +LD LN RR +E A+ A A+ + D Sbjct: 296 VNAGGRIGQADIGARLLASRDRHEAEALAERLDRLNTERREVEEAVRASALAQAEARGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ GD WHPG+VG++A+RLKE RP+ I + G+G GSGRS+ G D+G Sbjct: 356 ---APLVWAAGDGWHPGVVGIVASRLKEMTNRPAVVIGL-DGGEGKGSGRSVSGVDLGAS 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 V V EG+L+KGGGH MAAGLTV + ++DG+L Sbjct: 412 VQRLVAEGLLLKGGGHKMAAGLTVAEAQLEAAMARLAELLAKQGAGKGGAADLRLDGMLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + L +MLE AGP+GAG P+P FAFP+ ++ + V HL+++ L AI Sbjct: 472 PGAATVELCEMLERAGPFGAGAPSPRFAFPDVQVSFAKQVGSGHLKLSLGDGLGARLDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + PLG+ L +G+R + G L +N W G + QLR+ DA+P Sbjct: 532 CFGAFEGPLGQALTDHKGQRFQMAGRLEINEWNGRRAVQLRLEDAAPA 579 >gi|323136274|ref|ZP_08071356.1| single-stranded-DNA-specific exonuclease RecJ [Methylocystis sp. ATCC 49242] gi|322398348|gb|EFY00868.1| single-stranded-DNA-specific exonuclease RecJ [Methylocystis sp. ATCC 49242] Length = 597 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 277/590 (46%), Positives = 355/590 (60%), Gaps = 6/590 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFLGVE S+ G W + L G ALA+ Q H + D++ARVL R VS+ +L+P+ Sbjct: 7 AFLGVERSVLGRPWRARLDASGEALALALAQTHGLDDMLARVLAGRGVSVAEVDRYLDPT 66 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123 IR LMPDP + D D A R+ +AI E+I IFGDYDVDGA S AL++ + Sbjct: 67 IRTLMPDPSTVRDMDAAVDRLARAIETGEQIAIFGDYDVDGACSSALLIDYWRAAEAPEP 126 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++IPDRI +GYGPN + GA L++TVDCG+TS++ A G+DVIV+DHHQ Sbjct: 127 LLHIPDRIFEGYGPNAEAIRNLAGRGATLLVTVDCGTTSHEPFAVARELGLDVIVLDHHQ 186 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLS 240 +P +VNPNR DDLSGQG LCAAGVVFL L + R LR + + DLLS Sbjct: 187 APE-HLPDAIVVNPNRQDDLSGQGGLCAAGVVFLALAGLLRTLRTRDWWGDHRPAPDLLS 245 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LDLVALATV DV PL GLNRA+V KGL V R + GL AL++ + P A +LG+ Sbjct: 246 SLDLVALATVADVAPLSGLNRAFVAKGLSVMRNRSRTGLAALMDAARMDGPPRAYHLGFA 305 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRIG++ LG+ LL D E +A +LD LN R+ +E LE A A Sbjct: 306 LGPRINAGGRIGDAGLGACLLTLSDPVEASRIARELDRLNAERQAIEREALEAAVALAEE 365 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Q + S +VVEG WHPG+VGL+AARLKEKF PSFAI+F + GSGRS+ G D Sbjct: 366 QFVKTNRLSCLVVEGSDWHPGVVGLIAARLKEKFNLPSFAIAFNGE-TCSGSGRSLSGVD 424 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 IGK V AVE G+ VKGGGHAMAAG+TV L +F V A ID Sbjct: 425 IGKTVRRAVELGLAVKGGGHAMAAGITVLADRVAALREFLNDALAEQVEAARGADALVID 484 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 L+ VN+ L+ +E AGP+G GNP P+F P ++ VV H++ S D + Sbjct: 485 AALSGRGVNLDLLRRVERAGPFGQGNPEPLFVLPEQRIVDAAVVGTGHVRARLRSGDGAS 544 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + AIAFR G+PLGE L+ RG+R HV L N +RG +R + R+ D + Sbjct: 545 VDAIAFRAVGSPLGEALLGGRGERFHVAARLSTNQFRGVERVETRIADLA 594 >gi|90419170|ref|ZP_01227080.1| single-stranded-DNA-specific exonuclease recJ [Aurantimonas manganoxydans SI85-9A1] gi|90336107|gb|EAS49848.1| single-stranded-DNA-specific exonuclease recJ [Aurantimonas manganoxydans SI85-9A1] Length = 597 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 280/590 (47%), Positives = 387/590 (65%), Gaps = 1/590 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + FL V+ SI G RW++ L + AL + Q +PDIV+RVL R ++ A FL+P Sbjct: 6 RTFLDVDRSIGGRRWLNALDERAEGAALKMAQSLGLPDIVSRVLAARGIAEADATGFLDP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 IR LMPDP LT D AA R+ AI E + IFGDYDVDGAAS AL+ R+L H ++A Sbjct: 66 RIRDLMPDPSRLTAMDAAAERLADAIGRRESVAIFGDYDVDGAASSALLWRYLKHFGIDA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 + IPDRI +GYGPNP+ M + +GA LI+TVDCG+ S++A++ A +G+DV+V+DHHQ Sbjct: 126 AIRIPDRITEGYGPNPAAMRELAADGATLIVTVDCGTGSFEAIEAARAEGVDVVVLDHHQ 185 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLL 242 E A LVNPNR DDLSG GHLCAAGVVF+ LV + R LR+ D+ LL Sbjct: 186 TGPELPDANVLVNPNRQDDLSGLGHLCAAGVVFMTLVAVSRELRRRGMAQSKLPDVFGLL 245 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALATVCDVVPL+GLNRA+VV+GL VA Q N GL AL +S P+ + G+M+G Sbjct: 246 DLVALATVCDVVPLVGLNRAFVVQGLKVAHAQRNGGLAALGRVSRLSGPMETHHFGFMLG 305 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL DD + +A +L LN+ R+ ME ML +A+A+V + Sbjct: 306 PRINAGGRIGDAALGSRLLCLDDDAACDEVAARLSALNEERQAMEQTMLAEADAEVAAEI 365 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 + +V+VV + WHPGIVGL++ARLKE++ RP+FAI+F+ G+G GSGRSI GFD+G Sbjct: 366 GSGEGPAVLVVGSNDWHPGIVGLISARLKERYRRPAFAIAFDGSGRGTGSGRSIGGFDLG 425 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 ++V AV EG+LVKGGGHAMAAG+T+++ G F ++ A V AL K+DG Sbjct: 426 RLVREAVIEGLLVKGGGHAMAAGVTIQKDRLGDFRGFLEERAAAAVSALREGDSLKVDGT 485 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 ++A+ + L + AGP+G+G+ +P+FA H++ S +V H++ T D + Sbjct: 486 VSAAGLTPDLYATIMRAGPFGSGHASPIFALARHRIDSSSIVGNGHVRATLRGADGARVS 545 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AIAF+ T +G+ L+ SR + +H G L ++ +RG + + R+LD + Sbjct: 546 AIAFKTADTEVGQRLLSSRDRPIHAVGTLSLDRFRGREEVRFRLLDLAEA 595 >gi|118588879|ref|ZP_01546286.1| single-stranded-DNA-specific exonuclease [Stappia aggregata IAM 12614] gi|118438208|gb|EAV44842.1| single-stranded-DNA-specific exonuclease [Stappia aggregata IAM 12614] Length = 605 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 282/589 (47%), Positives = 375/589 (63%), Gaps = 3/589 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + LGV S + W L + A+AI+Q H +PD++ARV+ R V D A FL+P Sbjct: 11 RLVLGVARSANDNAWRERLSAADLRTAMAISQVHGLPDVLARVMAARGVLADEATGFLDP 70 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 S++LLMPDP L D D A R+ A+ KI IFGDYDVDGA S A+ ++L ++ Sbjct: 71 SLKLLMPDPSSLVDMDAAVARVADAVQAGRKIAIFGDYDVDGATSSAIFAKYLQWLGLDP 130 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++IPDRI++GYGPN +E GA L++T+DCGSTS++A + A +DV+VIDHHQ Sbjct: 131 VIHIPDRIIEGYGPNGPAIEHLRQGGADLLVTLDCGSTSFEAFETARQLDLDVVVIDHHQ 190 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSL 241 V ALVNPNR DDLSGQGHL A GV FL LV + R LR+ DL++L Sbjct: 191 VGETLPAVEALVNPNRQDDLSGQGHLAAVGVTFLFLVGLNRELRRRGVFQGAQQPDLMAL 250 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVAL TVCDVVPL GLNRAYV +GL V ++ N GL AL + +S +LG++I Sbjct: 251 LDLVALGTVCDVVPLQGLNRAYVTRGLAVMHQRRNYGLTALADTARVSGKPAPYHLGFLI 310 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LG+RLL ++D E +A +LD LN R+ ME+ MLEQA+A+ Sbjct: 311 GPRINAGGRIGDAALGARLLTTEDPHEARAIAERLDQLNTERQAMEAVMLEQADAEA-EM 369 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + +V++ D WHPGIVGL+A+RLKE + RPSFAI+F+E GKG GSGRSI G D+ Sbjct: 370 AIQARDPAVLLTGSDDWHPGIVGLIASRLKEAYRRPSFAIAFDETGKGTGSGRSIPGVDL 429 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 GK V AV+ G+L KGGGHAMAAGLTV L +F + V KID Sbjct: 430 GKAVRGAVDLGLLEKGGGHAMAAGLTVLSEKRADLEAYFNDVLKDDVETASANRELKIDA 489 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L A+ N+ L+++LE AGPYGAG+ PVFAFP H++ VV H++ + S D L Sbjct: 490 ALTATGANLDLLELLEKAGPYGAGHAEPVFAFPAHRISFADVVGKGHVRASITSGDGTAL 549 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AI F+ P G+ L+Q RG+ +HV G L ++ W+G+ + QLR+LD + Sbjct: 550 KAICFKADDKPHGQMLLQGRGQSLHVAGTLSIDTWQGTPKVQLRILDVA 598 >gi|158423475|ref|YP_001524767.1| RecJ exonuclease [Azorhizobium caulinodans ORS 571] gi|158330364|dbj|BAF87849.1| RecJ exonuclease [Azorhizobium caulinodans ORS 571] Length = 606 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 277/596 (46%), Positives = 369/596 (61%), Gaps = 5/596 (0%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 + ++ FL V S +G W L ALAI Q+H +PD+VAR+L R V ID F Sbjct: 11 LTNRPFLSVARSATGRTWRDRLDVRASQMALAIAQRHFVPDLVARILAGRGVDIDDVPAF 70 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L+P+I+ L+PDP LTD A R+ A+ E++ +FGDYDVDGA S AL++ L Sbjct: 71 LDPTIKALLPDPDTLTDMGGAVERVAAAVTRGEQVAVFGDYDVDGATSTALLVDVLRAAG 130 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 ++ +IPDRI +GYGPN + +E+ G L+ITVDCG+TS + L A G+DV+VID Sbjct: 131 LDPFFHIPDRIFEGYGPNVNAIEQLAARGVTLLITVDCGTTSTEPLAAARRLGLDVVVID 190 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFD 237 HHQ A A+VNPNR DDLSG GHLCA G+VF+ +V + R LR+ D Sbjct: 191 HHQAGEHLPDANAIVNPNREDDLSGLGHLCAVGLVFVTVVGLVRKLREMGHWTGDRPAPD 250 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 LL+ LDLVAL TV DVVPL GLNRA+V KGL+ RR+ PGL AL++ + P +L Sbjct: 251 LLAALDLVALGTVADVVPLKGLNRAFVTKGLIALRRRQRPGLTALMDVSRLDGPPRPWHL 310 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML-EQAEA 356 G+++GP INAGGRIG++ LG+RLL++ D E +A +LD LN R+ +E +L + Sbjct: 311 GFLLGPRINAGGRIGDATLGTRLLLTQDPAEARAIAAELDRLNTERQAVEQGILADAEAE 370 Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI 416 AS +VV G WHPG+VGL+A+RLKE+F RP+FAI+F + G GSGRSI Sbjct: 371 AQAAMGIAGDGASTVVVSGQGWHPGVVGLVASRLKERFNRPAFAIAFTGE-TGTGSGRSI 429 Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 +G D+GK V AVE G+LVKGGGHAMAAGLTVE+ G L F + V Sbjct: 430 QGVDLGKAVRAAVEAGLLVKGGGHAMAAGLTVEKARLGDLRAFLENALAPDVAKAAGEGT 489 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536 IDG L AS AL+D + AGP+GAGNP PVFAFP+H+L H++ + Sbjct: 490 LTIDGALTASGATPALLDQVAKAGPFGAGNPEPVFAFPSHRLTYAETFGNGHVRARLVAG 549 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 D TL+A+AFR PLG ++ +RG+ +HV G L +++W+G R LRV D + V Sbjct: 550 DGTTLKAVAFRCAEEPLGRAILNARGRNLHVAGGLDMDHWQGEARVSLRVRDVAEV 605 >gi|240139513|ref|YP_002963988.1| putative single-strand DNA-specific exonuclease RecJ [Methylobacterium extorquens AM1] gi|240009485|gb|ACS40711.1| putative single-strand DNA-specific exonuclease RecJ [Methylobacterium extorquens AM1] Length = 611 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 263/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL V S G W G G+ A+ +TQ + +PD++ARVLV R V A +L Sbjct: 18 PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP +L D + A R+ A+ E + IFGDYDVDGA+S AL+ +L V Sbjct: 78 APRLRDLMPDPSVLVDMEAAVERLAYAVRARETVAIFGDYDVDGASSAALLADYLRALGV 137 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++ VDCG+ ++ L A G+DVIV+DH Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTTLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239 H E ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D L Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDGVFATSAEPRLT 257 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++ +S P A +LG+ Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG++ LG+RLL + D E +A +LD LN+ R+ +E+ + +AEA++ Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTADPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 V++ WHPGIVGL+AARLKE+FGRP+FA + + DG +GSGRS+ G Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G V AVE G+ VKGGGHAMAAG+T+ + V I Sbjct: 438 DLGGAVRSAVEAGLAVKGGGHAMAAGVTLPPGGLAAFGESLTHDLVETVGRARAAEALLI 497 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A L+ +++ AGP+G G P PV A P H++ +V H++ S D + Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRIVDAGIVGNGHVRARLVSGDGQ 557 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + AIAFR PLG L+ G+ HV G L + WRG++R Q+R+ D +P Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609 >gi|13471056|ref|NP_102625.1| single-strand DNA-specific exonuclease [Mesorhizobium loti MAFF303099] gi|14021800|dbj|BAB48411.1| single-strand DNA-specific exonuclease [Mesorhizobium loti MAFF303099] Length = 592 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 307/587 (52%), Positives = 387/587 (65%), Gaps = 1/587 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + FL + S +G W L + ALAI Q H +PDIVARVL R V+ D + FL P Sbjct: 5 RLFLDIRQSATGLSWEHRLTERQDMVALAIAQGHGVPDIVARVLAGRGVTADETERFLEP 64 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR L+P+P LTD DKAA RI A+ EK+ IFGDYDVDGAAS AL+ RFL+H S+ + Sbjct: 65 TIRDLLPNPASLTDMDKAATRIAAAVMAREKVAIFGDYDVDGAASSALLKRFLAHFSIPS 124 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP M + ++ GA LI+TVDCG+ S ++ A G DV+V+DHHQ Sbjct: 125 EIYIPDRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAISVDAANEAGADVVVLDHHQ 184 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 V A A+VNPNR DDLSGQGHLCAAGVVFL LV +ILR + V DLLSLLD Sbjct: 185 VGGALPAAIAVVNPNRDDDLSGQGHLCAAGVVFLALVQTAKILRGLSDVAP-PDLLSLLD 243 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATVCDVVPL G+NRA+VVKGL +AR+Q N GL AL I PI+ +L Y+IGP Sbjct: 244 LVALATVCDVVPLTGVNRAFVVKGLQMARQQKNEGLAALARVSRIGEPISTFHLAYLIGP 303 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG++ LGSRLL +DD E +A LD LNQ R+LME ML A A+ + Sbjct: 304 RINAGGRIGDAALGSRLLATDDPVEARTIAETLDRLNQERQLMEQEMLAAARAEADAELA 363 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 +++V + WHPGIVGLLA+RLK+ RP+FAI+F G G GSGRS+ GFD+G+ Sbjct: 364 GGSGPAIVVTASNNWHPGIVGLLASRLKDHARRPAFAIAFNAVGIGTGSGRSVSGFDLGR 423 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V A + G++VKGGGH MAAG+TVER G L FF++ A V L IDG L Sbjct: 424 LVREAADAGLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQDEESLAIDGAL 483 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A ++L+D LE AGP+GAG+ PVF P H+L R V H++ +S + A Sbjct: 484 AAEGATLSLLDALEKAGPFGAGHVAPVFVLPRHRLADARPVGTNHIRCELQSDAGGRIPA 543 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAFR T LGEFL ++RGK +HV G L NYW G++ Q R++DA+ Sbjct: 544 IAFRAVDTVLGEFLFKNRGKSVHVAGSLSGNYWNGNRTVQFRIVDAA 590 >gi|310816884|ref|YP_003964848.1| single-stranded-DNA-specific exonuclease RecJ [Ketogulonicigenium vulgare Y25] gi|308755619|gb|ADO43548.1| single-stranded-DNA-specific exonuclease RecJ [Ketogulonicigenium vulgare Y25] Length = 581 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 258/588 (43%), Positives = 345/588 (58%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGV S++G WV + A++Q+ + +A +L R + D A+ FL P Sbjct: 2 SFLGVTDSVTGRAWVGPDLETD-RLTEALSQQLGLSRPLAALLAQRGIDADGAEGFLTPR 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R LMPDP L D +KAA R+V A+ ++I IFGDYDVDG AS AL++ +L + + A Sbjct: 61 LRDLMPDPRSLRDMEKAAARLVLAVQTRQRIAIFGDYDVDGGASSALLIDWLRNFGLQAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M LII VDCG+ S++AL AT DVIV+DHH Sbjct: 121 LYIPDRIDEGYGPNVPAMADLAARH-DLIICVDCGTLSHEALGAATAA--DVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 PA A+VNPNR D+ +LCAAGVVFL LV R LR DL SLLDL Sbjct: 178 GETLPPALAVVNPNRQDESGDLTYLCAAGVVFLALVEANRQLRAGGL--QGPDLTSLLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+GLNRA V +GL V R+ PGL AL + I S ++ +LGY++GP Sbjct: 236 VALATVADVAPLVGLNRALVRQGLAVMGRRARPGLVALADVARIDSAPSSYHLGYILGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG ++LG+RLL + D E +A +LD LN RR +ESA+ + A A+ + + Sbjct: 296 VNAGGRIGRADLGARLLATTDPHEAAAMAAQLDALNTERRAIESAVRDAAIAQAEARGLE 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ + WHPG+VG++AAR+KE RPS I F + G G GSGRS+ G D+G Sbjct: 356 ---APLVWAASEGWHPGVVGIVAARIKEATNRPSVVIGF-DGGIGKGSGRSVSGVDLGAA 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV R N + +ID +L Sbjct: 412 IQRVAAEGLLLKGGGHKMAAGLTVTRENLEPAMARLSELLARQGAGAGGPSDLRIDALLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A +A+I+ LE AGP+GA P P FA P+ +Q ++ V HL++T L AI Sbjct: 472 PGAATVAMIEQLEQAGPFGASAPAPRFALPDVVVQYVKPVGSDHLKVTLGDGLGARLDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF +PLG L S +R+HV G L VN+W+G QLR+ DA+ Sbjct: 532 AFNAAQSPLGHLLTHSGSQRVHVVGRLEVNHWQGRASAQLRIEDAAKA 579 >gi|84502743|ref|ZP_01000862.1| probable single-stranded DNA-specific exonuclease [Oceanicola batsensis HTCC2597] gi|84389138|gb|EAQ01936.1| probable single-stranded DNA-specific exonuclease [Oceanicola batsensis HTCC2597] Length = 582 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 243/588 (41%), Positives = 336/588 (57%), Gaps = 10/588 (1%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 FL V S++G RWV E A A+ Q + +VL R V+ + A FL P++ Sbjct: 3 FLNVASSLTGRRWVG-PSVELDRAAEALAQARGFDRAICQVLARRGVTAEAADLFLAPAL 61 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 R L+PDP L D + AA R +QA+ E+I IF DYDVDG +S AL++ +L A + Sbjct: 62 RDLLPDPRRLRDMEPAAARFLQAVKRRERIAIFADYDVDGGSSAALLIDWLRQMGREATL 121 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 Y+PDRI +GYGPN M+ LI+ VDCG+ S+D + G DV+++DHH Sbjct: 122 YVPDRIDEGYGPNVPAMQAL-GRTHDLIVCVDCGTLSHDPVA---AAGCDVVILDHHLGG 177 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A VNPNR D+ HLCAA VVFL+LV R R + DL+++LDLV Sbjct: 178 ETLPDCVACVNPNRQDEDGALAHLCAAAVVFLMLVEANRQARAEG-ATSLPDLMAMLDLV 236 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 ALATV DV PL G+NRA+V +GL + R+ PGL AL + + S TA +LGY++GP I Sbjct: 237 ALATVADVAPLTGVNRAFVRQGLAIMARRERPGLAALADVARMDSAPTAYHLGYLLGPRI 296 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NAGGRIG+++LG+RLL + D E + LA +L+ LN RR +E+A+ A A+ + D Sbjct: 297 NAGGRIGKADLGARLLAATDRHEAQALADRLNELNAERREIEAAVTAAAMAQAEERGLD- 355 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 A ++ G+ WHPG+VG++A+RLKE RP+ I + +G GSGRS+ G D+G V Sbjct: 356 --APLVWASGEGWHPGVVGIVASRLKEATNRPAVVIGL-DGDEGKGSGRSVAGVDLGASV 412 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 EG+L+KGGGH MAAGLTV R + ++DG+L Sbjct: 413 QRLAAEGLLIKGGGHRMAAGLTVARDAIPEAMERLGALLAKQGAGTGGAADLRLDGLLMP 472 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 A + LI +E+AGP+GAG P P F FP+ + + V +HL++ F L AIA Sbjct: 473 GAATVPLIQQIETAGPFGAGAPAPRFVFPDVAVSFAKRVGESHLKLRFGDGMGAALDAIA 532 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F Y PLG L G R+H+ G L +N W G + QLR+ DA+P + Sbjct: 533 FGAYEGPLGTALSDRSGARVHLAGRLELNSWGGRQSVQLRIEDAAPAD 580 >gi|254475596|ref|ZP_05088982.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. R11] gi|214029839|gb|EEB70674.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria sp. R11] Length = 580 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 231/588 (39%), Positives = 339/588 (57%), Gaps = 9/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G RW+ A + Q+ +P V +VL R V A+ FL P Sbjct: 2 SFLGVETSLTGRRWIGPDLD-TARAAEMMEQQIGLPPAVCQVLARRGVPAHEAQGFLTPQ 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R +QA+ ++I +F DYDVDG +S AL++ +L + A Sbjct: 61 LKELLPDPRRMKDMEIAAARFLQAVEKRQRIAVFADYDVDGGSSAALLLVWLQQAGLGAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN M + LI+ VDCG+ S+ + A G DVIV+DHH Sbjct: 121 LYVPDRIDEGYGPNDEAMAALARDH-DLIVCVDCGTLSHGPI--AAAMGADVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV + R +R + DL++LLDL Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQMRDKG-LGTGPDLMALLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+ NRA V +GL V + PGL AL + + S + +LG+++GP Sbjct: 237 VALATVADVAPLVDANRALVRQGLKVMAARQRPGLVALADVSRMDSAPSTYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL + + E E +A +LD LN RR +E+A+ A + + D Sbjct: 297 VNAGGRIGKADLGARLLATTNPAEAEAIAARLDELNTERREIENAVRAAALEQAEARGFD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I + +G GSGRS+ G D+G Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGL-DGDEGKGSGRSVSGIDLGAS 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+ VKGGGH MAAGLTV R + + + K+DG+L Sbjct: 413 IQRVAAEGLFVKGGGHKMAAGLTVSRDKLEPAMERLAELLAKQGAGDLGPADLKLDGMLM 472 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI+ ++ AGP+GAG P P + FP+ +++ + + +HL+++ S + AI Sbjct: 473 PGAATVPLIEQIDQAGPFGAGAPAPRYGFPDLQVRFAKRIGESHLKLSLSDGLSSGIDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + T LG L+ G R H G L +N W G + QLR+ DA+ Sbjct: 533 CFGAFDTALGPRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA 580 >gi|319783896|ref|YP_004143372.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169784|gb|ADV13322.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 594 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 309/587 (52%), Positives = 390/587 (66%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + FL V S+SG W L + ALAI Q + +PDIVARVL R V+ + + FL+P Sbjct: 6 RLFLDVRQSVSGVSWEHRLTERQDMIALAIAQGYGVPDIVARVLAGRGVTAEQTERFLDP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR L+PDP LTD D+AA RI A+ EK+ IFGDYDVDGAAS AL+ RFL+H SV + Sbjct: 66 TIRDLLPDPASLTDMDRAAARIAAAVMAREKVAIFGDYDVDGAASSALLKRFLTHFSVPS 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP M + ++ GA LI+TVDCG+ S ++ A G DV+V+DHHQ Sbjct: 126 EIYIPDRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAASIDAANEAGADVVVLDHHQ 185 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 V A A+VNPNR DDLSGQGHLCAAGVVFL LV RILR DLLSLLD Sbjct: 186 VGGALPAAIAVVNPNRDDDLSGQGHLCAAGVVFLALVQTARILRSRMADATPPDLLSLLD 245 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 +VALATVCDVVPL G+NRA+VVKGL +AR+Q N GL AL I PI+ +L Y+IGP Sbjct: 246 IVALATVCDVVPLTGVNRAFVVKGLQMARQQKNEGLAALARVSRIGEPISTFHLAYLIGP 305 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG++ LGSRLL +DD E +A LD LNQ R+LME ML A A+ + Sbjct: 306 RINAGGRIGDAALGSRLLATDDPVEARTIAETLDRLNQERQLMEQEMLAAARAEADAELA 365 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 +++V + WHPGIVGLLA+RLK+ RP+FAI+F +G G GSGRS+ GFD+G+ Sbjct: 366 GGNGPAIVVTASNSWHPGIVGLLASRLKDHARRPAFAIAFNANGIGTGSGRSVSGFDLGR 425 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V A G++VKGGGH MAAG+TVER G L FF++ A V L IDG L Sbjct: 426 LVREAAIAGLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQGEESLAIDGAL 485 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A ++L+D LE AGP+GAG+ PVFA P H+L R V H+++ +S+ +QA Sbjct: 486 AAEGATLSLLDALEQAGPFGAGHVAPVFALPRHRLADARPVGTNHIRVELQSESGGRIQA 545 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAFR T LGEFL ++RGK +HV G L NYW G++ Q R+ DA+ Sbjct: 546 IAFRAVDTALGEFLFKNRGKTIHVAGSLSGNYWNGNRTVQFRITDAA 592 >gi|254486182|ref|ZP_05099387.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. GAI101] gi|214043051|gb|EEB83689.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. GAI101] Length = 579 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 247/588 (42%), Positives = 347/588 (59%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGV+ S++G RWV G E + + Q+ ++P + +VL R V A+ FL PS Sbjct: 2 SFLGVDASLTGRRWVG-PGVEVERASEVLGQQTSLPPALCQVLARRGVGPAEAEGFLAPS 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D +KAA R + A+ ++I +F DYDVDG +S AL++ +L +A Sbjct: 61 LRDLLPDPRSLRDMEKAATRFLAAVKARQRIAVFADYDVDGGSSAALLLVWLRDMGCSAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN M LI+ VDCG+ S+ + A G +VIV+DHH Sbjct: 121 LYVPDRIDEGYGPNDEAMAALAA-KHDLIVCVDCGTLSHGPIAAAV--GAEVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+A+VNPNR D+ HLCAAGVVFL+LV R LR+ DL++LLDL Sbjct: 178 AETLPDAHAVVNPNRQDEDGALAHLCAAGVVFLMLVEAGRQLREAG--AKGPDLMALLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG+NRA+V +GL V R+ GL AL + + + ++ +LG+++GP Sbjct: 236 VALATVADVAPLIGVNRAFVRQGLRVMARRDRLGLAALADAARMDTAPSSYHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG+++LG+RLL D E LA +LD LN RR +E+A+ A + + D Sbjct: 296 INAGGRIGQADLGARLLACSDPHEAAALAERLDTLNTERRDVEAAVRAAALDQAEVRGFD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ GD WHPG+VG++A+RLKE RPS I F EDG G GSGRS+ G D+G Sbjct: 356 ---APLVWASGDGWHPGVVGIVASRLKEASNRPSIVIGF-EDGIGKGSGRSVSGIDLGAP 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV + L ++DG+L Sbjct: 412 IQRLAAEGLLIKGGGHKMAAGLTVAEDKLEAAMARLSELLAKQGAHLGGAADLRLDGMLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 +A + L + +E AGP+GAG P P +AF + +++ V +HL+++F L AI Sbjct: 472 PAAATVELAEQIEQAGPFGAGAPAPRYAFADMQIRYANRVGESHLKISFGDGSGTKLDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF + P+G L G R H+ G L +N WRG + QLR+ DA+P Sbjct: 532 AFGAFDGPMGPALENHGGARFHLAGRLDINSWRGRQSVQLRLEDAAPA 579 >gi|254449696|ref|ZP_05063133.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter antarcticus 238] gi|198264102|gb|EDY88372.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter antarcticus 238] Length = 588 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 250/589 (42%), Positives = 340/589 (57%), Gaps = 10/589 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFL V S +G RWV E A A+ Q A+P V R LV R ++ A FL P+ Sbjct: 10 AFLDVAQSTTGRRWVG-PSVEDDRLAEAMAQDTALPLPVCRTLVRRGITAQDAASFLAPT 68 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R LMPDP L D + AA RIV A + +KI IF DYDVDG S AL++ +L V Sbjct: 69 LRDLMPDPRSLRDMEPAAARIVAAANSGQKIAIFADYDVDGGTSAALLIDWLRGFGVTPT 128 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN M + LII VDCG+ S+ ++ +G DV+V+DHH Sbjct: 129 LYVPDRIDEGYGPNDDAMSTLARDH-DLIICVDCGTLSHGPIE--AAKGADVVVLDHHLG 185 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 PA A+VNPNR D+ HLCAAGVVFLVLV R LR DL+SLLDL Sbjct: 186 GETLPPALAVVNPNRQDEAGDLAHLCAAGVVFLVLVEANRQLRDAG--SKTPDLMSLLDL 243 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VAL TV DV PLIG+NRA+V +GL V R+ GL L + + + ++ +LG+++GP Sbjct: 244 VALGTVADVAPLIGVNRAFVRQGLTVMARRQRVGLVTLADVARMDTAPSSYHLGFLLGPR 303 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG+++LG+RLL + D ++ + +A +LD LN RR +E+ + E A + + D Sbjct: 304 INAGGRIGKADLGARLLATIDPRQAQSMAERLDELNTERREIENQVREMAIEQAEQRGTD 363 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ G+ WHPG+VG++AARLKE RP+ I + G GSGRS+ G D+G Sbjct: 364 ---RPLVWAAGEGWHPGVVGIVAARLKEASNRPAIVIGL-DGDIGKGSGRSVFGIDLGAA 419 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV R D + I ++DG+L Sbjct: 420 IQRCAAEGLLIKGGGHKMAAGLTVARDKVDAAMDRLSELLAKQGANDIGPADLRVDGLLM 479 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI+++E AGP+GAG P P F FP+ + +VV HL++TF S + AI Sbjct: 480 PGAATVDLINIMEQAGPFGAGAPAPRFVFPDCAINFTKVVGANHLKVTFGDGISARIDAI 539 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F P+G L G R H+ G L +N W+G + QLR+ DA+P Sbjct: 540 CFGAMDGPIGPMLRDHGGARFHLAGRLEINTWQGRQSPQLRLEDAAPAT 588 >gi|254441408|ref|ZP_05054901.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter antarcticus 307] gi|198251486|gb|EDY75801.1| single-stranded-DNA-specific exonuclease RecJ [Octadecabacter antarcticus 307] Length = 589 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 253/589 (42%), Positives = 341/589 (57%), Gaps = 10/589 (1%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFL V S +G RWV E A A+ Q A+P V R LV R V A FL P Sbjct: 10 RAFLDVAQSATGRRWVG-PSVEDDRLAEAMAQDTALPLPVCRTLVRRGVVAQDAAAFLAP 68 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R LMPDP L D + AA RIV A + ++I IF DYDVDG S AL++ +L V Sbjct: 69 TLRDLMPDPRSLRDMEPAAARIVAAAHGRQRIAIFADYDVDGGTSAALLIDWLRGFGVTP 128 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +Y+PDRI +GYGPN + M + LII VDCG+ S+ + A +G DV+V+DHH Sbjct: 129 TLYVPDRIDEGYGPNDNAMFALARDH-DLIICVDCGTLSHGPI--AAAKGADVVVLDHHL 185 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ HLCAAGVVFLVLV R LR DL++LLD Sbjct: 186 GGEMLPPALAVVNPNRQDETGDLAHLCAAGVVFLVLVEANRQLRDAG--SKTPDLMALLD 243 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVAL TV DV PLIG+NRA+V +GL V R+ GL AL + + + ++ +LG+++GP Sbjct: 244 LVALGTVADVAPLIGVNRAFVRQGLTVMARRQRVGLVALADVARMDTAPSSYHLGFLLGP 303 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL S D E + +A +LD LN RR +E+ + E A + + Sbjct: 304 RVNAGGRIGKADLGARLLASTDPHEAQSMAQRLDELNTERREIENQVREMAIEQAEQRGT 363 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 D ++ G+ WHPG+VG++AARLKE RP+ I + G GSGRS+ G D+G Sbjct: 364 D---RPLVWAAGEGWHPGVVGIVAARLKEASNRPAIVIGL-DGDTGKGSGRSVSGIDLGA 419 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTV R + + I K+DGVL Sbjct: 420 AIQRCTAEGLLIKGGGHKMAAGLTVARDKVDAAMERLSELLAKQGAGDIGPADLKVDGVL 479 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A + LI+++E AGP+GAG P P F FP+ + +VV HL++TF S + A Sbjct: 480 MPGAATVDLIEIMEQAGPFGAGAPAPRFVFPDCTINFTKVVGANHLKVTFGDGISGRVDA 539 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 I F P+G L G R H+ G L +N W+G + QLR+ DA+P Sbjct: 540 ICFGAMDGPIGPMLRDHGGARFHLAGRLEINTWQGRQSPQLRLEDAAPA 588 >gi|254561927|ref|YP_003069022.1| single-strand DNA-specific exonuclease RecJ [Methylobacterium extorquens DM4] gi|254269205|emb|CAX25171.1| putative single-strand DNA-specific exonuclease RecJ [Methylobacterium extorquens DM4] Length = 611 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 263/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL V S G W G G+ A+ +TQ + +PD++ARVLV R V A +L Sbjct: 18 PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP +L D + A R+ A+ E + IFGDYDVDGA+S AL+ +L V Sbjct: 78 APRLRDLMPDPSVLVDMEAAVERLAHAVRGREAVAIFGDYDVDGASSAALLADYLRALGV 137 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++ VDCG+ ++ L A G+DVIV+DH Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTMLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239 H E ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D L Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDGVFATSAEPRLT 257 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++ +S P A +LG+ Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIGE+ LG+RLL + D E +A +LD LN+ R+ +E+ + +AEA++ Sbjct: 318 LVGPRINAGGRIGEAGLGARLLTTADPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 V++ WHPGIVGL+AARLKE+FGRP+FA + + DG +GSGRS+ G Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G V AVE G+ +KGGGHAMAAG+T+ + V I Sbjct: 438 DLGGAVRGAVEAGLAIKGGGHAMAAGVTLPPGGLAAFGESLTHDLVEAVGRARAAEALLI 497 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A L+ +++ AGP+G G P PV A P H++ +V H++ S D + Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRIVDAGIVGNGHVRARLVSGDGQ 557 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + AIAFR PLG L+ G+ HV G L + WRG++R Q+R+ D +P Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609 >gi|163852181|ref|YP_001640224.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium extorquens PA1] gi|163663786|gb|ABY31153.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium extorquens PA1] Length = 611 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 264/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL V S G W G G+ A+ +TQ + +PD++ARVLV R V A +L Sbjct: 18 PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP +L D + A R+ A+ E + IFGDYDVDGA+S AL+ +L V Sbjct: 78 APRLRDLMPDPSVLVDMEAAVERLAYAVRAREAVAIFGDYDVDGASSAALLAGYLRALGV 137 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++ VDCG+ ++ L A G+DVIV+DH Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTMLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239 H E ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D L Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDGVFATSTEPRLT 257 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++ +S P A +LG+ Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG++ LG+RLL + D E +A +LD LN+ R+ +E+ + +AEA++ Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTTDPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 V++ WHPGIVGL+AARLKE+FGRP+FA + + DG +GSGRS+ G Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G V AVE G+ VKGGGHAMAAG+T+ D V I Sbjct: 438 DLGGAVRGAVEAGLAVKGGGHAMAAGVTLPPGGLAAFGDSLTHDLVEAVGRARAAEALLI 497 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A L+ +++ AGP+G G P PV A P H++ +V H++ S D + Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRIVDAGIVGNGHVRARLVSGDGQ 557 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + AIAFR PLG L+ G+ HV G L + WRG++R Q+R+ D +P Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609 >gi|188582130|ref|YP_001925575.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium populi BJ001] gi|179345628|gb|ACB81040.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium populi BJ001] Length = 611 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 262/592 (44%), Positives = 359/592 (60%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL V S+ G W G G A +TQ + +PD++ARVLV R V A+ +L Sbjct: 18 PRPFLDVTASVLGRPWCERCGDPGQQALATTMTQAYGLPDLLARVLVGRGVGPAEAEAYL 77 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P +R LMPDP +L D + A R+ A+ + E + IFGDYDVDGA+S AL+ +L V Sbjct: 78 SPRLRDLMPDPSVLVDMEAAVDRLAHAVRSREAVAIFGDYDVDGASSAALLADYLRALGV 137 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++ VDCG+ ++ L A G+DVIV+DH Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTALRGEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239 H E ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR + L Sbjct: 198 HGAPEELPATRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRGEGVFASAAEPRLT 257 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LDLVALATV DVVPL+GLNRA+V++GL V R +G PGL AL++ +S P A +LG+ Sbjct: 258 DFLDLVALATVADVVPLVGLNRAFVMQGLAVMRARGRPGLAALLDAAGLSEPPEAWHLGF 317 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG++ LG+RLL + DS E +A +LD LN+ R+ +E+ + +AEA++ Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTADSMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + V++ WHPGIVGL+AARLKE+FGRP+FA + + DG +GSGRS+ G Sbjct: 378 ARLAGDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G V AV G+ VKGGGHAMAAG+T+ + + V I Sbjct: 438 DLGGAVRDAVAAGLAVKGGGHAMAAGVTLPPGGLAAFGESLARDLTEAVGQARAAEALLI 497 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A L+ +++ AGP+G G P PV A P H++ VV H++ S D + Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRVVDAGVVGNGHVRARLVSGDGQ 557 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + AIAFR PLG L+ G+ HV G L + WRG++R Q+R+ D +P Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609 >gi|154248669|ref|YP_001419627.1| single-stranded-DNA-specific exonuclease RecJ [Xanthobacter autotrophicus Py2] gi|154162754|gb|ABS69970.1| single-stranded-DNA-specific exonuclease RecJ [Xanthobacter autotrophicus Py2] Length = 626 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 276/593 (46%), Positives = 371/593 (62%), Gaps = 4/593 (0%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 + ++ FL V S +G W L G ALA+ Q+ I +++ARVL R+V +D + + Sbjct: 32 LPNRLFLDVARSATGRTWRERLDVRGAQTALAMAQRTGISELLARVLAGRDVPLDGVEQY 91 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L+PSIR L+PDP LTD A R+ +A+ + E++ +FGDYDVDGA + ALM+ L Sbjct: 92 LDPSIRTLLPDPDTLTDMGAAVARLSRAVTSGEQVAVFGDYDVDGACATALMVGVLRAAG 151 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 ++ +IPDRI +GYGPN +E+ G L++TVDCG+TS + L A G+D +VID Sbjct: 152 LDPLFHIPDRIFEGYGPNVPAIEQLAARGVTLLVTVDCGTTSMEPLAAARRLGMDTVVID 211 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFD 237 HHQ A A+VNPNR DDLSG GH+CAAG+ F+ V + R LRQ+ D Sbjct: 212 HHQSGERLPDAAAIVNPNREDDLSGLGHVCAAGLAFITAVGLVRALRQNGHFNTARPAPD 271 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 LL LDLVALATV DVVPL GLNRA+V KGL+ RR+G GL AL++ + P +L Sbjct: 272 LLDTLDLVALATVADVVPLKGLNRAFVTKGLLAMRRRGRIGLTALMDAARLDGPPRPFHL 331 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G++IGP INAGGRIGE+ LG++LL++ D E +A +LD LN R+ +E A+L AEA+ Sbjct: 332 GFLIGPRINAGGRIGEATLGAKLLLTQDPAEARQIAAELDRLNGERQEVERAILAAAEAE 391 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 + SVIVV GD WHPG+VGL+A+RLKE+F RP+FAI+F + G GSGRS+ Sbjct: 392 AEAALGLSDEGSVIVVSGDGWHPGVVGLVASRLKERFQRPAFAIAFNGE-TGTGSGRSLP 450 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 G DIG+ V A+E G+LVKGGGHAMAAGLTVER G L F++ V Sbjct: 451 GVDIGRAVRAALEAGLLVKGGGHAMAAGLTVERARLGALRAAFEERLAADVARARAEGTL 510 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 IDG L A L++M+ AGP+GAGN PVFAFP H++ + H++ S D Sbjct: 511 SIDGALTARGATTDLVEMVSRAGPFGAGNGEPVFAFPGHRISYVESFGAGHVRARISSPD 570 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 TL+A AFR PLG L+ +RG+ +HV G L ++ W+G R LR+ D + Sbjct: 571 GTTLKATAFRCAEEPLGRALLAARGRPLHVAGSLELDTWQGETRVALRMRDVA 623 >gi|126727763|ref|ZP_01743594.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales bacterium HTCC2150] gi|126703019|gb|EBA02121.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales bacterium HTCC2150] Length = 582 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 235/585 (40%), Positives = 341/585 (58%), Gaps = 10/585 (1%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68 VE S++G RWV L + A A+ Q+ + ++R+L R V+ D + FL PS+R L Sbjct: 5 VENSLTGRRWVGLGTD-TVRAAEALAQQTGLSLPLSRILARRGVAADESTSFLAPSLRDL 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 MPDP + D +KAA R + A+ ++KI IF DYDVDG +S AL++ +L + A +Y+P Sbjct: 64 MPDPRSMLDMEKAAGRFLAAVKANQKIAIFADYDVDGGSSAALLVWWLRDFGIQATVYVP 123 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 DRI +GYGPN + M + L+I VDCG+ S+ + +G DVIV+DHH Sbjct: 124 DRIDEGYGPNDAAMAELAA-THDLVICVDCGTLSHGPI--QATKGADVIVLDHHLGGETL 180 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A A+VNPNR D+ HLCAAGVVFL+LV R R + DL++LLDLVALA Sbjct: 181 PDALAVVNPNRQDETGDLAHLCAAGVVFLMLVEANRQRRVLG--EKSPDLMALLDLVALA 238 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 TV DV PLIG+NRA+V +GL + + PGL AL + + S T+ +LG+++GP +NAG Sbjct: 239 TVADVAPLIGVNRAFVRQGLKIMAARQRPGLVALADVARMDSAPTSYHLGFLLGPRVNAG 298 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRIG ++LG+RLL +D+ E +A +LD LN RR +E+ + E A + ++ A Sbjct: 299 GRIGAADLGARLLSTDNPHEAGAMAERLDQLNSERRAIENQVREGALEQAQSRDLA---A 355 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 +I D WHPG+VG++A+RLKE RPS I F E +G GSGRS+ G D+G + Sbjct: 356 PLIWAADDGWHPGVVGIVASRLKESTNRPSVVIGF-EGDEGKGSGRSVSGVDLGASIQKL 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 V EG+L KGGGH MAAGL++ R + + + D +L +A Sbjct: 415 VAEGLLTKGGGHKMAAGLSLTRAQLEPAMERLGELLAKQGAGELGPRDLHYDSILMPTAA 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 LI+ +E+AGP+GA P F FP+ ++ + V +HL+ +F + L IAF Sbjct: 475 TTDLIEQIENAGPFGASAAAPRFVFPDQRITFAKPVGESHLRFSFGDETGTRLDGIAFGA 534 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + +G L + H+ G L +N W G ++ QLR+ DA+P + Sbjct: 535 FDSEIGNSLQNAGHNLFHLAGRLELNTWGGRQKVQLRLEDAAPAD 579 >gi|114570056|ref|YP_756736.1| single-stranded-DNA-specific exonuclease RecJ [Maricaulis maris MCS10] gi|114340518|gb|ABI65798.1| exonuclease RecJ [Maricaulis maris MCS10] Length = 603 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 233/595 (39%), Positives = 337/595 (56%), Gaps = 10/595 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 LGV S+SG RW +G + ++ +IPD +ARV+ R V+ D A FL+ Sbjct: 12 SSPLLGVSRSLSGKRWRLREADDG--AVAMMARQQSIPDALARVMAARGVAPDQAAAFLS 69 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P +R PDP D DKAA + AI + +F DYDVDGA S A ++R+ H Sbjct: 70 PRLRDSFPDPSDFADMDKAAGLVWDAIEAERPMAVFADYDVDGATSAAQLIRYFRHFDRT 129 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 A +Y+PDR+ +GYGP+ + + GA+L+ITVDCG+ + AL +A + G+DVIVIDHH Sbjct: 130 AEIYVPDRVEEGYGPSGTAFDTLKARGAELVITVDCGAAARIALTHAASIGLDVIVIDHH 189 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLS 240 + + PA ALVNPNR DD SG GHL AAGV F+ L + R R+ + + LL Sbjct: 190 LMDDDMPPAAALVNPNRPDDRSGCGHLAAAGVTFVFLAALNREGRRRGTITPDNEPSLLD 249 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +DL AL T+CDVVPL G+NRA +GL + GL+ L E + + + G++ Sbjct: 250 WIDLAALGTICDVVPLTGVNRAITAQGLKAMSGWRHLGLRCLAETSGVDGEASTYHAGFL 309 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGR+G ++LG+ LL ++D +A +LD LN RR +E+ +LE A A++ Sbjct: 310 IGPRINAGGRVGRADLGATLLTTEDETLARRIAGELDGLNSERRAIEADVLEAASAQLDG 369 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---KGIGSGRSIE 417 Q D ++++ G+ WHPG++G++A RLKE+F +P I + + G GSGRS+ Sbjct: 370 QSAD---RAILIAAGEGWHPGVIGVVAGRLKERFDKPVIVIGIDREARPPVGKGSGRSVP 426 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 G ++G ++ A E G+L GGGHAMA GL+++ L F + + A Sbjct: 427 GVNLGGAIAAAREAGLLTSGGGHAMAGGLSMDPDRITELVAFLDERLAPELAAAADDMAL 486 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 K DGVL AS V++ L MLE A P+G GN P FA P+ ++ + V H++ T D Sbjct: 487 KADGVLTASGVSLDLARMLERAAPFGQGNAEPRFALPDMRVSFAKRVGTDHVRFTLSDPD 546 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + I FR TP+GE L+ + H G L ++ W+G +R QL + D S Sbjct: 547 GRRVDGICFRCADTPIGEALLAAGPGLFHAFGRLKLDAWQGRERVQLHLEDLSTA 601 >gi|328544275|ref|YP_004304384.1| Single-stranded-DNA-specific exonuclease RecJ [polymorphum gilvum SL003B-26A1] gi|326414017|gb|ADZ71080.1| Single-stranded-DNA-specific exonuclease RecJ [Polymorphum gilvum SL003B-26A1] Length = 602 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 286/591 (48%), Positives = 376/591 (63%), Gaps = 3/591 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + LGV S SG W ALAI Q+ +PD++ARVL R+V+ A+ FL Sbjct: 6 TARPVLGVTRSASGQVWRERQTPAQGLAALAIAQRLDLPDVLARVLAARDVTAADAEGFL 65 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+++ LMPDP L D D+A R+ A+ +I IFGDYDVDGA S A++ R+L + Sbjct: 66 DPTLKALMPDPSRLVDMDRAVARVADAVEAGTRIAIFGDYDVDGATSSAVLARYLRRLGL 125 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + ++IPDRI++GYGPN +E GA L++TVDCGSTS++A A G+DV+VIDH Sbjct: 126 DPAIHIPDRIIEGYGPNGPAIEALRAAGAGLLVTVDCGSTSFEAFDVARRLGLDVVVIDH 185 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLL 239 HQ E ALVNPNR DDLSGQGHL A GV FL LV + R LR+ DLL Sbjct: 186 HQCGVELPAVSALVNPNRQDDLSGQGHLAAVGVTFLFLVGLNRELRRRGTFRRGGEPDLL 245 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LLDLVAL TVCDVVPL GLNRAYV KGL+ + NPGL +L + + A +LG+ Sbjct: 246 GLLDLVALGTVCDVVPLKGLNRAYVAKGLIAMHGRLNPGLASLADVARVGGKPAAYHLGF 305 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG++ LG+RLL DD QE LA LD LN R+ ME+ MLE+ +A+ + Sbjct: 306 LLGPRINAGGRIGDAALGARLLTCDDPQEARGLAETLDRLNAERQAMEAVMLEEGDAQAV 365 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 Q D +V+V WHPGIVGL+A+RLKE RP+FAI+++E GKG GSGRSI G Sbjct: 366 VQI-DTHDPAVLVTGSPGWHPGIVGLIASRLKEAHRRPAFAIAYDETGKGTGSGRSISGV 424 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G+ V AV+EG+L KGGGHAMAAGLTV R L +F + + V T KI Sbjct: 425 DLGRAVRRAVDEGLLEKGGGHAMAAGLTVRREREADLVAYFNETLKDDVEVASATRELKI 484 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 D L A+ + L+ +L+ AGPYGAG+P PVF FP H++ VV H++ T + D Sbjct: 485 DAALTAAGATLELMSLLDKAGPYGAGHPEPVFVFPAHRISYADVVGKGHVRATIAAPDGS 544 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +L+ I+F+ P GE L+ +RG+ MHV G L V+ W+G+ R QLR+LD + Sbjct: 545 SLKGISFKAAERPHGEALLAARGRPMHVAGSLSVDTWQGAPRVQLRILDVA 595 >gi|163742989|ref|ZP_02150372.1| single-stranded-DNA-specific exonuclease RecJ [Phaeobacter gallaeciensis 2.10] gi|161383672|gb|EDQ08058.1| single-stranded-DNA-specific exonuclease RecJ [Phaeobacter gallaeciensis 2.10] Length = 580 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 240/588 (40%), Positives = 344/588 (58%), Gaps = 9/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S+SG RW+ E A + Q+ A+P V +VL R V A FL P Sbjct: 2 SFLGVETSLSGRRWIG-PDVEVARAAEMMEQQTALPAAVCQVLARRGVPSHEASGFLTPQ 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R +QA+ E+I +F DYDVDG +S AL++ +L+ ++A Sbjct: 61 LKELLPDPRRMKDMEPAAARFLQAVERRERIAVFADYDVDGGSSAALLLVWLNQVGLSAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN + M LI+ VDCG+ S+ + A +G DVIV+DHH Sbjct: 121 LYVPDRIDEGYGPNDAAMAALAR-EHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV + R +R + DL++LLDL Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKG-LGTGPDLMALLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLI NRA V +GL V + PGL AL + + S + +LG+++GP Sbjct: 237 VALATVADVAPLIEANRALVRQGLKVMATRQRPGLVALADVSRMDSAPSTYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL + D E E +A +LD LN RR +E+A+ A + + D Sbjct: 297 VNAGGRIGKADLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAALEQAEARGLD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I + +G GSGRS+ G D+G Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAIVIGL-DGDEGKGSGRSVSGIDLGAS 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + A EG+L+KGGGH MAAGLTV R + + K+DG+L Sbjct: 413 IQRAAAEGLLIKGGGHKMAAGLTVAREQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLM 472 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI+ +E AGP+GAG P P + FP+ +++ + V +HL+++ S + AI Sbjct: 473 PGAATVPLIEQIEQAGPFGAGAPAPRYGFPDLQVRFAKRVGESHLKLSLSDGLSSGIDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + T LG L+ G R H G L +N W G + QLR+ DA+ Sbjct: 533 CFGAFDTALGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA 580 >gi|89055493|ref|YP_510944.1| single-stranded-DNA-specific exonuclease RecJ [Jannaschia sp. CCS1] gi|88865042|gb|ABD55919.1| exonuclease RecJ [Jannaschia sp. CCS1] Length = 582 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 243/589 (41%), Positives = 340/589 (57%), Gaps = 11/589 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G RW+ + A + Q+ + VA +L R V D FL P+ Sbjct: 4 SFLGVEASLTGRRWIG-PSDDVERLAQTLIQRADLDPAVAAILARRGVQPDDVASFLAPA 62 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP+ L D AA R+V+A ++I IF DYDVDG +S AL++ +L A Sbjct: 63 LRDLLPDPMSLKDMAPAATRLVEAARKGKRIAIFADYDVDGGSSAALLIWWLRALGRQAT 122 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M G LII VDCG+ S+ + A +G DV+V+DHH Sbjct: 123 LYIPDRIDEGYGPNDEAMAALAR-GHDLIICVDCGTLSHGPI--AAAKGADVMVLDHHLA 179 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 +E A+VNPNR D+ GHLCAAGVVFLVLV R +R+ DL+ LLDL Sbjct: 180 TAELPECVAVVNPNRQDEDGASGHLCAAGVVFLVLVDANRRMREAG--EQGPDLMGLLDL 237 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG+NRA VV+GL V R+ PGL AL + + T+ +LG+++GP Sbjct: 238 VALATVADVAPLIGVNRALVVQGLKVMARRQRPGLVALSDVGRLDRAPTSYHLGFVLGPR 297 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG ++LG+R L +DD E LA +LD LN +RR +E + E A + + + Sbjct: 298 VNAGGRIGAADLGARCLSTDDMAEAVKLAAQLDTLNTDRREIEQRVREAALVQAEARGLE 357 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ D WHPG+VG++A+RLK+ RP+ I F+ D GSGRS+ G D+G Sbjct: 358 ---APLVWAAEDGWHPGVVGIVASRLKDHTRRPAIVIGFDGDDG-KGSGRSMAGVDLGAS 413 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG++ KGGGH MAAGL++ R + + ++DG + Sbjct: 414 IQKLAAEGLIQKGGGHKMAAGLSLSRAQLEPAMERLTELLAKQGAGTGGPADLRLDGTIM 473 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 SA LI+ +E+AGPYGAG P P FA P +++ R V HL++T T+ AI Sbjct: 474 TSAATPELIEKIEAAGPYGAGAPAPRFALPALRIRHTRPVGETHLKLTLGDGGPVTIDAI 533 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F + L E L G+ +HV G + +N+W+G R QLR+ DA+ + Sbjct: 534 CFDAVRSGLDE-LQAHNGRSVHVAGRVELNHWQGRTRVQLRLDDAAWAD 581 >gi|255037797|ref|YP_003088418.1| single-stranded-DNA-specific exonuclease RecJ [Dyadobacter fermentans DSM 18053] gi|254950553|gb|ACT95253.1| single-stranded-DNA-specific exonuclease RecJ [Dyadobacter fermentans DSM 18053] Length = 570 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 179/579 (30%), Positives = 281/579 (48%), Gaps = 18/579 (3%) Query: 16 FRWVSLLG--QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 RW+ E A ++ + + +A +LV R + D ++DF P IR L DP Sbjct: 4 KRWIHHPPFTSEQEQVAQSLAESLKVSPSLATLLVQRGILDFDQSRDFFRPDIRHLH-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA R+++AI ++EKI+++GDYDVDG SVAL FL N + YIPDR Sbjct: 63 FLMADMEKAVERLIKAIDSNEKILVYGDYDVDGTTSVALFYGFLKRIYPNLDYYIPDRYE 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + +E G LI+T+DCG S D + A +GID I+ DHH+ E PA Sbjct: 123 EGYGVSWQGVEWAHANGYTLIVTLDCGVKSVDKVTAALEKGIDFIICDHHRPGDELPPAA 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D L L GV F +L +V L LDL+ ++ D Sbjct: 183 AVLDPKREDCLYPYKELTGCGVGFKLLQAFCVK-----QVLDPETLYDYLDLLVVSIASD 237 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +VP+ G NR GL Q G+KALI+ ++ + N+ + +GP INA GRI Sbjct: 238 IVPITGENRVLAFYGLQRLNAQPRTGIKALIQISGMTGALDITNVVFGLGPRINAAGRIK 297 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + RLL+S+ +E A +++ N RR +S++ EQA + A V Sbjct: 298 HAKEAVRLLLSEIEEEAISFAEEINKHNSERRNFDSSITEQALFMIENDEW-FSNAKSTV 356 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WH G++G++A+R EK+ RP+ ++ GK GS RS+ GFD+ + + Sbjct: 357 LYKEDWHKGVIGIVASRCIEKYHRPTIILT-HSHGKAAGSARSVPGFDVYEAIEEC--AD 413 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH AAGLT+ N F + + + P+ +D +L A+ Sbjct: 414 LLEQYGGHTFAAGLTLPLDNVEAFKMRFNEIVSSRIQPDQLVPMINVDMLLELEAITPKF 473 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 ++L GP+G GN PVF N L ++ H++ + +S A+ F + Sbjct: 474 YNILRQMGPFGPGNMTPVFESRNMTLVGRPMLMKEKHIKFDVKQNNSAVFTAVGFGMGHF 533 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G+ + L N++R K QL + D Sbjct: 534 ----YPDIVNGRPFSICYCLEENHFRDKKTLQLSLKDIK 568 >gi|163746061|ref|ZP_02153420.1| single-stranded-DNA-specific exonuclease RecJ [Oceanibulbus indolifex HEL-45] gi|161380806|gb|EDQ05216.1| single-stranded-DNA-specific exonuclease RecJ [Oceanibulbus indolifex HEL-45] Length = 579 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 248/586 (42%), Positives = 340/586 (58%), Gaps = 10/586 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G RW+ E + Q+ +PD V +VL R V A FL P+ Sbjct: 2 SFLGVETSLTGRRWIG-PDVELTRATELLVQRAGLPDPVCQVLARRGVVDTEAAGFLAPA 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D + AA R ++A++ E+I IF DYDVDG +S AL++ +L A Sbjct: 61 LRDLLPDPRSLRDMEAAATRFLEALHKRERIAIFADYDVDGGSSAALLLVWLRDMGHRAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M LI+ VDCG+ S+ + A +G DVIV+DHH Sbjct: 121 LYIPDRIDEGYGPNDEAMSALAA-EHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A+VNPNR D+ HLCAA VVFL+LV R LR+ DL+S+LDL Sbjct: 178 GETLPDALAVVNPNRQDEDGTLAHLCAAAVVFLMLVEAGRQLRE--TSRKGPDLMSMLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 V LATV DV PLIG+NRA+V +GL V R+ PGL AL + + + TA +LG+++GP Sbjct: 236 VGLATVADVAPLIGVNRAFVRQGLKVMARRARPGLAALADVARMDTAPTAYHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG+++LG+RLL + D E LA +LD LN +RR +E+A+ A A+ + D Sbjct: 296 INAGGRIGQADLGARLLATADPNEAAALAERLDQLNTDRREVEAAVRASAMAQAEDRGFD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + G WHPG+VG++A+RLKE RPS I EDG G GSGRSI G D+G Sbjct: 356 G---PLAWAAGPGWHPGVVGIVASRLKEASNRPSIVIGV-EDGIGKGSGRSISGIDLGAP 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV + L + G++ Sbjct: 412 IQRLAAEGLLMKGGGHKMAAGLTVAEDKIEAAMKRLGELLSKQGAHLAGPADLNLCGMMM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + L +M++ AGP+GAG P P +AF + +++ + V HL+++F L+AI Sbjct: 472 PGAATVELAEMVDQAGPFGAGAPAPRYAFADMQIRFAKRVGENHLKVSFGDGLGANLEAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AF Y PLG L G R H+ G L +N +RG + QLR+ DA+ Sbjct: 532 AFGAYDGPLGPALENHGGARFHLAGRLDINNFRGRRSVQLRLEDAA 577 >gi|114797921|ref|YP_760668.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomonas neptunium ATCC 15444] gi|114738095|gb|ABI76220.1| single-stranded-DNA-specific exonuclease RecJ [Hyphomonas neptunium ATCC 15444] Length = 597 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 222/590 (37%), Positives = 326/590 (55%), Gaps = 9/590 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 FLGVE S G RW L + A D+VAR+L R V+ + A +L P+ Sbjct: 11 PFLGVERSAGGRRW--RLADVDETMVRRLMPAAAGSDLVARLLAGRGVTPETAPSYLAPT 68 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L PDP + D DKAA I+ AI +++ +F DYDVDG S A++ R+ Sbjct: 69 LRDLFPDPSLFADMDKAAGIILDAIVAGKRVCVFADYDVDGGTSSAILARYFRAWGRELG 128 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDR+ +GYGP+P +G L+ITVDCG+ + AL A + + V+V+DHH + Sbjct: 129 LYVPDRLEEGYGPSPEAFRWLKAQGYDLVITVDCGAAAVRALDEAVSIDLPVVVLDHHLM 188 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242 ALVNPNR D SGQGHL AAGVVF+ + R+ RQ N P D+L L Sbjct: 189 SGHLPETAALVNPNRPDCTSGQGHLAAAGVVFVFAAAMNRLARQRNIAPPAGLPDILPYL 248 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DL AL T+CD+ PL G+NRA+V +GL + R N GL+AL + I + + +++G Sbjct: 249 DLCALGTLCDMSPLTGVNRAFVRQGLTIMSRGENVGLRALADVSGIGEIDSVYHATFLLG 308 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +NAGGR+G+ L ++LL +DD E LA +L LN RR +E+A+ ++A A+ Sbjct: 309 PRLNAGGRVGDPWLAAKLLATDDRGEAIALAERLHTLNDERRAVEAAIQDEATAQAERAL 368 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE--DGKGIGSGRSIEGFD 420 +I+ G+ WHPG++G++A RLK++F P+ I + E GSGRS+ G + Sbjct: 369 AANPDRGIIIAAGEGWHPGVIGIVAGRLKDRFHLPTIIIGWGEGLGPVAKGSGRSVTGVN 428 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G +S A EGI++ GGGHAMA GL++E D+ ID Sbjct: 429 LGDAISAAAREGIILSGGGHAMAGGLSLEPHQIAAFDDWMVAHMAQFTAERDAALDLHID 488 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 VL+ + L D++ + GP+G G P PVFA + +R + HL+ T E+ Sbjct: 489 AVLSPGSATTDLYDLIAALGPFGMGAPEPVFAMTDVMPTGVRRIGANHLRFTAENNTGR- 547 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ IA+RV P+G+ L G+R+ + G L + W G +R QL +LDA+ Sbjct: 548 IECIAWRVADEPMGDLLR--TGQRVGLAGRLKSDQWNGRRRVQLEILDAA 595 >gi|114771174|ref|ZP_01448594.1| single-stranded-DNA-specific exonuclease RecJ [alpha proteobacterium HTCC2255] gi|114548099|gb|EAU50986.1| single-stranded-DNA-specific exonuclease RecJ [alpha proteobacterium HTCC2255] Length = 582 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 231/588 (39%), Positives = 335/588 (56%), Gaps = 10/588 (1%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL VE SISG RW +A I Q+ +A VL V + K+++ Sbjct: 1 MNDIFLDVESSISGRRWTGPNISVD-RQAEMILQETNFSSAMANVLARLGVEANQVKNYI 59 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 PS+R LMP+PL + D +KAA RI A+ N E+I IF DYDVDGA S AL+ +L+ Sbjct: 60 KPSLRDLMPNPLKILDMEKAASRINIAVNNHERIAIFADYDVDGATSGALLHDWLTQLGN 119 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 +Y+PDRI +GYGPN ME N LII VDCG+ S++ + D+I++DH Sbjct: 120 IPTLYVPDRIEEGYGPNIVAMETLAN-VHDLIICVDCGTLSHETIN--KITNTDIIILDH 176 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241 H AYA+VNPNR D+ +LCAAGVVFL LV I R +N DLL++ Sbjct: 177 HLGGETLPNAYAVVNPNRQDEKGDLYYLCAAGVVFLTLVAANSIRRNNN--KSTPDLLNM 234 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVAL TV DV PLIG NRA V +GL V ++ G+ AL + +++ + +LGY++ Sbjct: 235 LDLVALGTVADVAPLIGFNRALVRQGLKVMAKRERIGITALSDIAKMNNAPSPYHLGYLL 294 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGR+G+++LG RLL + E +A KL+ LN RR +E+ + QA +V Sbjct: 295 GPRINAGGRVGKADLGIRLLTCKNFDEANSIADKLNQLNDERRSIEATVQIQALEQVEKM 354 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 +++ G+ WHPG+VG++A+R+KE +P+ I +E +G GSGRSI G D+ Sbjct: 355 ---DSNSALAWAAGEGWHPGVVGIVASRIKEITNKPTVVIGLDEH-EGKGSGRSISGIDL 410 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G ++ E ++++GGGH MAAGL++ER + N T ++DG Sbjct: 411 GSSIATLQRENLIIRGGGHKMAAGLSLEREKLEIAMSRLNELLANQGSKSFQTRELQLDG 470 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L+ A+ I L++ LE+AGP+GAG P P FA P ++ + +HL++ ++ Sbjct: 471 ALSLPAITIELLEQLETAGPFGAGAPGPKFALPFMRITFAKRAGESHLRLRLVDDSGASI 530 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF + + LG+ L +G+ HV G L ++ W G R +L + DA Sbjct: 531 DAIAFGAFKSDLGKTLENHKGQIFHVAGRLEIDTWNGRMRPKLNLEDA 578 >gi|163738625|ref|ZP_02146039.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Phaeobacter gallaeciensis BS107] gi|161387953|gb|EDQ12308.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Phaeobacter gallaeciensis BS107] Length = 580 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 240/588 (40%), Positives = 344/588 (58%), Gaps = 9/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S+SG RW+ E A + Q+ A+P V +VL R V A FL P Sbjct: 2 SFLGVETSLSGRRWIG-PDVEVARAAEMMEQQTALPAAVCQVLARRGVPSHEASGFLTPQ 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R +QA+ E+I +F DYDVDG +S AL++ +L+ ++A Sbjct: 61 LKELLPDPRRMKDMEPAAARFLQAVERCERIAVFADYDVDGGSSAALLLVWLNQVGLSAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN + M LI+ VDCG+ S+ + A +G DVIV+DHH Sbjct: 121 LYVPDRIDEGYGPNDAAMAALAR-EHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV + R +R + DL++LLDL Sbjct: 178 GETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKG-LGTGPDLMALLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLI NRA V +GL V + PGL AL + + S + +LG+++GP Sbjct: 237 VALATVADVAPLIEANRALVRQGLKVMATRQRPGLVALADVSRMDSAPSTYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL + D E E +A +LD LN RR +E+A+ A + + D Sbjct: 297 VNAGGRIGKADLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAALEQAEARGLD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I + +G GSGRS+ G D+G Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAIVIGL-DGDEGKGSGRSVSGIDLGAS 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + A EG+L+KGGGH MAAGLTV R + + K+DG+L Sbjct: 413 IQRAAAEGLLIKGGGHKMAAGLTVARDQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLM 472 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI+ +E AGP+GAG P P + FP+ +++ + V +HL+++ S + AI Sbjct: 473 PGAATVPLIEQIEQAGPFGAGAPAPRYGFPDLQVRFAKRVGESHLKLSLSDGLSSGIDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + T LG L+ G R H G L +N W G + QLR+ DA+ Sbjct: 533 CFGAFDTALGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA 580 >gi|83951463|ref|ZP_00960195.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius nubinhibens ISM] gi|83836469|gb|EAP75766.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius nubinhibens ISM] Length = 579 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 234/586 (39%), Positives = 342/586 (58%), Gaps = 10/586 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLG+ S++G RW+ + A A+ Q +P + ++L R V A+ FL P Sbjct: 2 SFLGIAQSLTGRRWIGPTTEID-RLAEAMAQTTDLPRALCQILARRGVEPQEAESFLTPQ 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR L+PDP L D + AA+R + A+ E+I IF DYDVDG +S AL++ +L A Sbjct: 61 IRDLLPDPRGLKDMEAAAQRFLLAVQRGERIAIFADYDVDGGSSAALLIDWLRQMGRAAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN + M + + LII VDCG+ S+ + A + DV+++DHH Sbjct: 121 LYVPDRIDEGYGPNDAAMAELAS-THDLIICVDCGTLSHGPV--AAAKDADVVILDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A+VNPNR D+ HLCAA VVFL+LV R LR+ + DL+++LDL Sbjct: 178 GETLPEAVAVVNPNRQDEDGALAHLCAAAVVFLMLVEAGRQLREAGQ--KGPDLMAMLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PLIG+NRA+V +GL V R+ PGL AL + + P A +LG+++GP Sbjct: 236 VALATVADVAPLIGVNRAFVRQGLRVMARRERPGLVALADAARLDRPPAAYHLGFVLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +D+ E LA +L+ LN+ RR +E+ + A + + D Sbjct: 296 VNAGGRIGQADLGARLLSTDNPAEARALADRLEELNRERRDVEAQVRAAALDQAEARGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ GD WHPG+VG++A+RLKE RP+ I + +G GSGRSI G D+G Sbjct: 356 ---APLVWAAGDGWHPGVVGIVASRLKEAANRPAIVIG-FDGDEGKGSGRSISGVDLGAS 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV R + ++DG+L Sbjct: 412 IQKLAAEGLLIKGGGHKMAAGLTVARDQLDAAMARLSELLDKQGAGAAGAADLRLDGLLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A LID ++ AGP+GAG P + F + ++ + + +HL++ F +L+AI Sbjct: 472 PGAATPELIDQIDGAGPFGAGASAPRYVFSDMQISFAKRIGESHLKLRFGDGMGASLEAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +F + PLG L + G R H+ G L +N+W G + QLR+ DA+ Sbjct: 532 SFAAFDGPLGPVLSEHGGARFHLAGRLEINHWGGRQSVQLRLEDAA 577 >gi|73667504|ref|YP_303520.1| RecJ exonuclease [Ehrlichia canis str. Jake] gi|72394645|gb|AAZ68922.1| exonuclease RecJ [Ehrlichia canis str. Jake] Length = 584 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 229/579 (39%), Positives = 335/579 (57%), Gaps = 15/579 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 ++G W + L I QK + +I ARVL R +SI+ DFL P+++ +PDP Sbjct: 14 VTGALW--KPHNVNLRDILTIKQKFCLSEIAARVLSTRKISIEEIHDFLYPTLKASLPDP 71 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI +AIYN EKI++FGDYDVDGA S AL+ ++L+ V +YIPDRI Sbjct: 72 FHLLDMDKAVNRICEAIYNKEKIVVFGDYDVDGATSSALIKQYLTQIGVPTTIYIPDRIC 131 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + K G L ITVDCG+ +++ + A + +DVIVIDHH + A Sbjct: 132 EGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGMNTLPDAI 191 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250 A++NPNRLD+ S +L GV FL+L+ + + L++ N +L++ LDLVAL TV Sbjct: 192 AVINPNRLDENSPYTYLAGVGVSFLMLIALNKTLKEKGFFTNNTEPNLINYLDLVALGTV 251 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P+IGLNRA+V +GL + + N GLK L + + + LG+ IGP INAGGR Sbjct: 252 CDVMPIIGLNRAFVKQGLKIIATRQNIGLKVLSDVIGLEEKPNVYQLGFSIGPHINAGGR 311 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G ++LG+RLL S++ +E ++ KL N R+ +E +A + T Sbjct: 312 VGNASLGARLLSSNNEEEALEISEKLQNFNLERKELEHQSFNEAVEQAETLMSTNTN--- 368 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +++ WHPGI+G++A RLK+KF PS IS +G G S RSI D+G + A Sbjct: 369 LIIVAGNWHPGIIGIVAGRLKDKFFLPSIVIS-LNNGIGKASARSIPDVDLGAAILSAKL 427 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 EGI+ +GGGHAMAAG ++ L +F + HNI VFK+DGV+ ASA+N+ Sbjct: 428 EGIITEGGGHAMAAGFSINEDKIKTLYEFLSQRFHNINK----QKVFKVDGVITASAINL 483 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L L+ P+G GNP P F N K+++ ++ +H++ + ++ I FR Sbjct: 484 TLWKELQFLEPFGIGNPEPKFILTNIKIKNPEIIGDSHIRC-LIYDNKTFIKGICFRCVD 542 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG L++ + + G + VNYWRG++ Q + DA Sbjct: 543 TELGLALLERTA--VMLLGKISVNYWRGNENIQFIIEDA 579 >gi|299133805|ref|ZP_07026999.1| single-stranded-DNA-specific exonuclease RecJ [Afipia sp. 1NLS2] gi|298591641|gb|EFI51842.1| single-stranded-DNA-specific exonuclease RecJ [Afipia sp. 1NLS2] Length = 613 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 273/602 (45%), Positives = 375/602 (62%), Gaps = 3/602 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 AFLGV S +G W L G +ALAI Q++ +P+++AR++ R + ID +DFL Sbjct: 12 TPHAFLGVARSATGKLWRDRLDARGAAQALAIVQRYQLPEMLARIIAGRGIDIDAVEDFL 71 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+IR L+PDP +T + AA+RI A E + IFGDYDVDGA S AL+ L HC + Sbjct: 72 DPTIRKLLPDPSTVTQMEAAAKRIADAATRGEMVAIFGDYDVDGATSAALLAWHLRHCGL 131 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + ++IPDRI +GYGPN + GA+L++TVDCG+TS + L A G+DV+VIDH Sbjct: 132 DPLIHIPDRIFEGYGPNVEAIRSLSLRGAKLLVTVDCGTTSLEPLAEARKLGMDVVVIDH 191 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238 HQ E ALVNPNR DDLSG GHL A G+VF+ LV + R LR N +L Sbjct: 192 HQCGDELPVVNALVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRVRNFWTAERPEPNL 251 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L +L VAL TV DV PL+GLNRA+V KGL+ RR+ + G AL++ ++ P A +LG Sbjct: 252 LDMLHHVALGTVADVAPLLGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLG 311 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RRL+E A +QAEA+ Sbjct: 312 FMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNVERRLIEQAAEQQAEAEA 371 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 L + SVIV + WHPG+VGL+A+RLKEKF RP+FA++ E G G GSGRSI G Sbjct: 372 LASLGLEDKGSVIVTASEGWHPGVVGLVASRLKEKFSRPAFAVALEPGGIGTGSGRSIAG 431 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+GK V AV EG+L+KGGGHAMAAG+T+++ + ++ V Sbjct: 432 VDLGKAVREAVSEGLLMKGGGHAMAAGVTLKKDRLAEFRAYLEQRLAEDVAKARHVDELF 491 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 IDG ++A AV ++ L AGP+G GNP P+ A P+H+L V AH+++ +S D Sbjct: 492 IDGAVSARAVTTDFVETLNRAGPFGTGNPEPMIALPSHQLVYADEVGGAHMRVRLKSGDG 551 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 + IAFR G LG L ++RG+ +HV G L ++ W+G++R QLR+ D + E + Sbjct: 552 AMVNGIAFRSVGQKLGNALAENRGQVVHVAGSLSIDRWQGAERVQLRISDIAVPEREPVS 611 Query: 599 KK 600 + Sbjct: 612 IR 613 >gi|126729046|ref|ZP_01744860.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata E-37] gi|126710036|gb|EBA09088.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata E-37] Length = 581 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 241/588 (40%), Positives = 342/588 (58%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 A+LGV+ S+SG RWV E +A + Q+ + + +L V + A+ +L P Sbjct: 2 AYLGVKNSLSGRRWVG-PDVETERQAELLAQQTGLARPLCAILARLGVPPEEAQPYLEPR 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D + AA R ++A+ E+I +F DYDVDG +S AL++ +L A Sbjct: 61 LRDLLPDPRSLKDMETAATRFLKAVSGRERIAVFADYDVDGGSSAALLIDWLRQMGRPAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPNP+ M + LI+ VDCG+ S+DA+ A +G DV+V+DHH Sbjct: 121 LYVPDRIDEGYGPNPTAMAALARDH-DLIVCVDCGTLSHDAI--AAAKGADVVVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ HLCAA VVFL+LV R LR+ DL+ +LDL Sbjct: 178 GETLPACVAVVNPNRQDEDGELAHLCAAAVVFLMLVEAGRQLREAG--ARGPDLMKMLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL G+NRA V +GL V R+ GL AL + + + +LG+++GP Sbjct: 236 VALATVADVAPLRGVNRALVQQGLKVMGRRERVGLVALSDVARLERAPESYHLGFVLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL SD+ E + +A +L+ LN RR +E+A+ A A+ + D Sbjct: 296 VNAGGRIGQADLGARLLASDNPAEAQAMAERLEALNAERREIEAAVRAAALAQAEARGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A +I G+ WHPG+VG++A+RLKE GRPS I + +G GSGRS+ G D+G Sbjct: 356 ---APLIWAAGEGWHPGVVGIVASRLKEHTGRPSIVIGLDGA-EGKGSGRSVAGVDLGAS 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 V EG+L+KGGGH MAAGLTV R + ++DGVL Sbjct: 412 VQRLAAEGLLIKGGGHRMAAGLTVARDRLEEAMARLSELLEKQGAGSGGASDLRVDGVLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + L++ LE AGP+G G P P F P+ +L +VV HL++T L+AI Sbjct: 472 PGAAQVDLVEDLERAGPFGQGAPGPRFVVPDVRLSFAKVVGAGHLKITCGDGLGARLEAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F PLG+ L+ +G+R H+ G L VN W+G Q+R+ DA+P Sbjct: 532 CFNAMDGPLGQTLLNHQGRRFHLAGKLDVNTWQGRHTVQMRLDDAAPA 579 >gi|88607079|ref|YP_505704.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma phagocytophilum HZ] gi|88598142|gb|ABD43612.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma phagocytophilum HZ] Length = 585 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 215/580 (37%), Positives = 328/580 (56%), Gaps = 13/580 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 +SG W L I QK + +IVA VL + + +D +DFL P+++LL+PDP Sbjct: 15 VSGAVWKV--HNATYRDVLTIKQKFGLSEIVAHVLAIKRIPLDDIRDFLFPTLKLLLPDP 72 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D KA RI++AIY E+I+IFGDYDVDGA S A++ R+ A +YIPDR+ Sbjct: 73 FHLLDMGKAVDRILKAIYEKERIVIFGDYDVDGATSSAMLKRYFKSIGATAEVYIPDRLK 132 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPNP + K +G L ITVDCG+ +++ + A G+DVIV+DHH A Sbjct: 133 EGYGPNPEALIKLRKKGCSLCITVDCGTVAHEPISVARAAGLDVIVVDHHIGSPTLPDAT 192 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATV 250 A++NPNRLD+ S +L G F++L+ + + LRQ +L++ LDLVAL TV Sbjct: 193 AIINPNRLDETSTYTYLSGVGTSFMLLIALNKTLRQAGYFQQENEPNLMNYLDLVALGTV 252 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P++ LNRA+V +GL V +GN GL+ L + + I + +LG+ IGP INAGGR Sbjct: 253 CDVMPMLKLNRAFVKQGLKVMSERGNMGLRTLADAIGIEEKPSVYHLGFCIGPHINAGGR 312 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 IG S+LG+RLL S+D+ E + L LN R+ +E+ L +A A+ D+ + Sbjct: 313 IGNSSLGARLLSSNDAIECNKIVTMLLDLNNERKEIENRSLAEALAQAELLVDEGKN--- 369 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I++ WH G++G++A R+KE+F P+ IS + G S RS+ G DIG V A Sbjct: 370 IIMVTGNWHVGVIGIIAGRIKERFFLPTIVIS-LDGDMGKASARSVAGIDIGAAVLSAKF 428 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E ++ +GGGH MAAG +V R L F + G+L+ + ++ Sbjct: 429 EKLIPEGGGHEMAAGFSVHRSQIEPLYK----FFLERFKDVNIQKALHASGILSTAGISS 484 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 AL L+ P+G GNP P F N ++++ ++ +H++ + +++ + F+ G Sbjct: 485 ALCRELQLLEPFGPGNPEPKFVLRNVRIKNPAIIGESHIKCLIDDGSGASVRGMCFKCVG 544 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T L L+Q G +H+ G + +N WRG++ Q + D + Sbjct: 545 TELALGLLQG-GIAVHLLGKVSMNQWRGNEYVQFIIDDLA 583 >gi|148263783|ref|YP_001230489.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter uraniireducens Rf4] gi|146397283|gb|ABQ25916.1| exonuclease RecJ [Geobacter uraniireducens Rf4] Length = 573 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 188/580 (32%), Positives = 287/580 (49%), Gaps = 18/580 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74 RW + + ++AR+LVNR + A FL S+ DP + Sbjct: 7 KRWKVR--DCDPVDVERLVKGGVASPLLARLLVNRAVIEPAAASRFLTSSLAQFH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L ++A R+ A+ EK+ + GDYDVDG SVAL++ F ++A YIPDR+VDG Sbjct: 64 LLGMERAVDRLAAAVKKGEKVCVHGDYDVDGITSVALLLSFFRSIGLDAIYYIPDRLVDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + + GAQ+++TVDCG T+ + GID+IV DHH AYA+ Sbjct: 124 YGLSADGVARAATLGAQVMVTVDCGITAVAEATLCSAAGIDLIVTDHHMPGDSLPEAYAV 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252 +NP + L GV F +++ + LR++ +L LDLVAL TV D Sbjct: 184 INPLQPGCTFPFKSLAGVGVAFNLMIALRSRLREEGFFAGKEEPNLREYLDLVALGTVAD 243 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 VVPL NR V GL PG++AL + ++ + +G+ + P +NA GR+ Sbjct: 244 VVPLTDENRILVKHGLRELTNSQRPGVQALKDVAGVNGDVGCGAVGFRLAPRLNAAGRLE 303 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +G LL+ D ++ E LA LD N R+ +E +L A A V + ++ IV Sbjct: 304 NAAMGVELLLCGDRKKAEPLAAALDASNAERQAVEREILNDALAMV-KETPALRNRKSIV 362 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A+RL + F RP+ I+ ++ G G GSGRSI F + ++ Sbjct: 363 LASEAWHPGVIGIVASRLVDMFHRPTILIALKD-GNGKGSGRSIANFHLHDALNVCF--D 419 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L+K GGH AAGL++ F + A ++ A TP+ IDG L AS + L Sbjct: 420 HLIKFGGHKHAAGLSIAEETLEAFVARFDEVAAGLLTAEDLTPLLLIDGELEASEITSEL 479 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +D LE+ P+G GNP PVF + ++ R + HL+M + + AI F + G Sbjct: 480 VDGLETMKPFGMGNPEPVFLLRDAEVSDCRTLKETHLKMRL-NAGCRSFDAIGFSLAGR- 537 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 ++G R+ V +N W G QL + D Sbjct: 538 ------AAQGDRLDVVFTPAINVWNGRSSLQLTIKDLRKA 571 >gi|126738787|ref|ZP_01754483.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. SK209-2-6] gi|126719968|gb|EBA16675.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. SK209-2-6] Length = 581 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 237/588 (40%), Positives = 342/588 (58%), Gaps = 9/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G RW G + A + Q+ +P + +VL R V A FL P Sbjct: 3 SFLGVETSLTGRRWTG-PGVDLERAAEHMQQQTGLPAPLCQVLARRGVPPHEAMGFLTPQ 61 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R ++A+ ++I IF DYDVDG +S AL++ +L + + Sbjct: 62 LKELLPDPRRMKDMEAAAARFLEAVEKRQRIAIFADYDVDGGSSAALLIVWLRAMGLQST 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN + M + LII VDCG+ S+ + A +G DV+V+DHH Sbjct: 122 LYIPDRIDEGYGPNEAAMAGLARDH-DLIICVDCGTLSHGPI--AAAKGADVVVLDHHLG 178 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV R R + DLLSLLDL Sbjct: 179 GETLPDCVAVVNPNRQDEEGDLGYFCAAGVVFLMLVETRRQARGKG-LGAGPDLLSLLDL 237 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL G NRA V +GL V + PGL AL + + + +A +LG+++GP Sbjct: 238 VALATVADVAPLTGANRALVRQGLKVMAGRQRPGLVALADVSRMDTAPSAYHLGFLLGPR 297 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +D+ E LA +LD LN RR +E+A+ A + + D Sbjct: 298 VNAGGRIGKADLGARLLATDNPHEAAALAERLDQLNSERRDIENAVRAAALEQAEARGFD 357 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I + G+G GSGRS+ G D+G Sbjct: 358 ---APLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLND-GEGKGSGRSVTGIDLGAA 413 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLT+ N + + + K++G+L Sbjct: 414 IQRTAAEGLLLKGGGHKMAAGLTLAEENLEPAMERLAELLAKQGAGDLGPSDLKLEGMLM 473 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LI+ +E AGP+GAG P P +A P+ +++ + V +HL+++ + AI Sbjct: 474 PGAATVDLIEQIEQAGPFGAGAPAPRYALPSLEVRFAKQVGESHLKLSLSDGLGGKIDAI 533 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + TPLG L+ G R H G L VN W G + QLR+ DA+ Sbjct: 534 CFGAFDTPLGSRLLNHGGARFHFAGRLEVNTWGGRQSAQLRLEDAAEA 581 >gi|89069140|ref|ZP_01156513.1| probable single-stranded DNA-specific exonuclease [Oceanicola granulosus HTCC2516] gi|89045313|gb|EAR51379.1| probable single-stranded DNA-specific exonuclease [Oceanicola granulosus HTCC2516] Length = 591 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 248/589 (42%), Positives = 342/589 (58%), Gaps = 10/589 (1%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFL V S++G RWV A+ Q + D VARVLV NV+ + A +L+P Sbjct: 13 EAFLSVATSVTGRRWVGPAPGAD-RLTEALVQATGLADPVARVLVRLNVAPETATAYLSP 71 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L+PDPL L D AA R +QA+ +E+I IF DYDVDG AS AL++ +L A Sbjct: 72 ALRDLLPDPLTLRDMHAAAARFLQAVARNERIAIFADYDVDGGASAALLLTWLRAMGRRA 131 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M LI+ VDCG+ S++ + A G DV+++DHH Sbjct: 132 TLYIPDRIDEGYGPNVPAMRALAR-EHDLIVCVDCGTLSHEPVAAAE--GADVVILDHHL 188 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A+VNPNR D+ GHLCAA VVFL+LV R LR+ +LL LD Sbjct: 189 GGETLPAALAVVNPNRQDEDGALGHLCAAAVVFLMLVEAGRQLREQG--AKGPNLLEFLD 246 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PLIG+NRA V +GL V ++ PGL AL + + + T+ LGY+ GP Sbjct: 247 LVALATVADVAPLIGVNRALVRQGLAVMAQRRRPGLVALADVARLDTAPTSYTLGYVFGP 306 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG ++LG+RLL +DD E LA +LD LN RR +E+A+ + A + + Sbjct: 307 RVNAGGRIGAADLGARLLATDDPHEAAALAQRLDALNTERREIEAAVRDAALEQAEGRGL 366 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 D ++ G+ WHPG+VG++AARLKE GRP+ I + +G GSGRS+ G D+G Sbjct: 367 DG---PLVWAAGEGWHPGVVGIVAARLKEATGRPAVVIGL-DGDEGKGSGRSVGGIDLGA 422 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTV R + + ++DG+L Sbjct: 423 AIHKVAGEGLLLKGGGHRMAAGLTVARDRLEPAMTRLSELLARQGAGRLGPADLRLDGLL 482 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A + L + LE GP+G G P P FAFP ++ R V HL++ F+ + A Sbjct: 483 MPGAATVELCESLERCGPFGQGAPAPRFAFPGVRITQAREVGTGHLKVRFDDGFGGGIDA 542 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF P+G+ L+Q G R H+ G L +N W+G +R Q+++ DA+P Sbjct: 543 IAFNALEGPMGQCLVQHGGARFHLAGRLEINVWQGRQRVQVKLEDAAPA 591 >gi|84687257|ref|ZP_01015137.1| single-stranded-DNA-specific exonuclease RecJ [Maritimibacter alkaliphilus HTCC2654] gi|84664690|gb|EAQ11174.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacterales bacterium HTCC2654] Length = 582 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 237/586 (40%), Positives = 340/586 (58%), Gaps = 8/586 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFL V+ S++G RW G E +A A+ Q +P V VL R V D A FL P+ Sbjct: 3 AFLDVDNSLTGRRWTG-PGVELERQAEALVQATGLPAPVCAVLARRGVQADEAAGFLAPT 61 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR +PDP + D D+AA R++ A+ +E++ +F DYDVDG +S AL++ ++ + Sbjct: 62 IRDTLPDPRSMRDMDRAAARLLAAVDKNERVAVFADYDVDGGSSAALLIDWMRRMGRDIT 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN ME LI+ VDCG+ S++ + A +G +V+V+DHH Sbjct: 122 LYIPDRIDEGYGPNVPAMEALAE-THSLIVCVDCGTLSHEPIAAANAKGAEVVVLDHHLG 180 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 PA A+VNPNR D++ G+LCAAGVVFL+LV R LR+ DL+ +LDL Sbjct: 181 GETLPPALAVVNPNRQDEVDAPGYLCAAGVVFLMLVEAGRQLREAG--RRGPDLMGMLDL 238 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G NRA V +GL + ++G PG+ AL + ++ +LG+++GP Sbjct: 239 VALATVADVAPLVGANRALVTQGLKIMAQRGRPGMVALADVARMNEAPRPYHLGFLMGPR 298 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL D E LA +LD LN RR +E + A + + D Sbjct: 299 VNAGGRIGKADLGARLLACTDPAEAGALAARLDQLNTERREIEEQVRLAALDQAEARGLD 358 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ D WHPG+VG++A+RLK+ RP+ I F + +G GSGRS+ G D+G Sbjct: 359 ---APLVWAAADGWHPGVVGIVASRLKDAAHRPAIVIGF-DGDEGKGSGRSVSGVDLGAS 414 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG++ KGGGH MAAGL++ R + +DG+L Sbjct: 415 IQKLAAEGLIEKGGGHKMAAGLSLSRAQLEPAMARLSELLARQGAGAGGPRDLAVDGILM 474 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 A + LID +E+AGP+GAG P P FAFP+ ++ + V HL+++F + AI Sbjct: 475 PGAATVDLIDEIEAAGPFGAGAPAPRFAFPDVQISFAKRVGDRHLKVSFGDGLGAKIDAI 534 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AF Y PLG L G R H+ G L +N+W+G QLR+ DA+ Sbjct: 535 AFGAYDGPLGPALEGHGGARFHLAGRLEINHWQGRSIPQLRLEDAA 580 >gi|227821964|ref|YP_002825935.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium fredii NGR234] gi|227340964|gb|ACP25182.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium fredii NGR234] Length = 600 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 339/591 (57%), Positives = 436/591 (73%), Gaps = 1/591 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 ++AFLGVE SISG RWVS L Q G NRALAI+Q H +++ARVL R V +D A FL+ Sbjct: 9 ERAFLGVERSISGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGLDDAAQFLD 68 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R LMPDP +LTDC KAA R+ AI + EK+ IFGDYDVDGAAS ALM+RFL H + Sbjct: 69 PTLRALMPDPDVLTDCRKAAERLAHAIRHGEKVAIFGDYDVDGAASSALMLRFLRHFDIR 128 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 A +YIPDRI +GYGPNP +E+ I GA LI++VDCGSTS+++L A +G+DV+VIDHH Sbjct: 129 AEIYIPDRIFEGYGPNPQAIEQLIENGAGLIVSVDCGSTSHESLAVAAERGVDVVVIDHH 188 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN-KVPLNFDLLSL 241 QV + P +ALVNPNR DDLSGQGHLCAAGVV+LVLV R+LR +FDLL+L Sbjct: 189 QVGATLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLAGVPRAASFDLLAL 248 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVALATVCDVVPL GLNRAYVVKGL+ AR GN GL AL+ + I P+T +LG++I Sbjct: 249 LDLVALATVCDVVPLKGLNRAYVVKGLIAARHMGNNGLAALLRKAAIGGPVTPYHLGFLI 308 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LGSRLL DD+ E++A +LD LN+ R+ ME+AML +AEA+VL + Sbjct: 309 GPRINAGGRIGDAALGSRLLTLDDATAAEVIASQLDELNRERQAMEAAMLAEAEAEVLAE 368 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + A+VI+ + WHPGIVGL+AAR+KEKF RP+FAI+F+ +G+G GSGRSI GFD+ Sbjct: 369 YGTGEGATVIITARENWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSIPGFDM 428 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G++V AV++G+LVKGGGHAMAAGLTVER GRL FF++ A + V L+ K+DG Sbjct: 429 GRLVRAAVDDGLLVKGGGHAMAAGLTVERAKLGRLRQFFEERAESAVRDLVAVETLKLDG 488 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L A+ + L+D+L+ AGPYG+ +P PVFAFP H+L+ R V H+++T E D + Sbjct: 489 ALAAAGATLDLVDLLDQAGPYGSAHPQPVFAFPQHRLRDSRQVGANHIKVTLEGHDGSRV 548 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR TPLG+FL+ SRG +HV G + + W+G++R QLRV DA+ Sbjct: 549 DGIAFRATETPLGDFLLGSRGSTVHVAGSVSADLWQGTRRVQLRVTDAAKA 599 >gi|149914303|ref|ZP_01902834.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. AzwK-3b] gi|149811822|gb|EDM71655.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. AzwK-3b] Length = 580 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 242/589 (41%), Positives = 346/589 (58%), Gaps = 10/589 (1%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +LG+ S++G RW+ G E RA A+ Q +P + + L V A+ +L P Sbjct: 2 DTYLGIAQSLTGRRWIG-PGAEVERRAEAMAQSTGLPRPLCQTLARLGVPETEAEPYLEP 60 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 S+R L+PDP L D + AA R + A+ E+I IF DYDVDG +S AL++ +L + A Sbjct: 61 SLRDLLPDPRSLRDMETAAGRFIAAVRARERIAIFADYDVDGGSSAALLIDWLRQMGLAA 120 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M + LII VDCG+ S+DA+ A G DV+++DHH Sbjct: 121 TLYIPDRIDEGYGPNEPAMAELAA-AHDLIICVDCGTLSHDAIAAAR--GADVVILDHHL 177 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ HLCAA VVFL+LV R LR+ DL+++LD Sbjct: 178 GGETLPPALAVVNPNRQDETGDLAHLCAAAVVFLMLVEAGRQLRERG--ETRPDLMAMLD 235 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PL G+NRA+V +GL + + PGL AL + + + +A +LG+++GP Sbjct: 236 LVALATVADVAPLRGVNRAFVRQGLRIMAHRDRPGLVALSDVARLDTAPSAYHLGFVMGP 295 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL + D E LA +LD LN RR +E+ + A A+ + Sbjct: 296 RVNAGGRIGKADLGARLLATRDISEARSLAERLDQLNSERRDIEAGVRAAALAQAEARGL 355 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 D A ++ G+ WHPG+VG++A+RLKE RP+ I + +G GSGRSI G D+G Sbjct: 356 D---APLVWAAGEGWHPGVVGIVASRLKELTNRPAIVIGM-DGDEGKGSGRSISGVDLGA 411 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTV R + + ++DGVL Sbjct: 412 SIQRLAAEGLLIKGGGHRMAAGLTVARDRLEAAMERLSELLDRQGSGAAGPADLRLDGVL 471 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A + L++ +E+AGP+GAG P P + FP+ ++ + V AHL++ F S L A Sbjct: 472 MPGAATVELVERIEAAGPFGAGAPGPRYVFPDMQIGFAKRVGDAHLKLRFGDGLSGQLDA 531 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF + +PLG+ LM G R H+ G + +N W G + QL++ DA+P Sbjct: 532 IAFGAFDSPLGQALMSHGGARFHLAGRIGINEWGGRRSPQLQLEDAAPA 580 >gi|85705202|ref|ZP_01036301.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. 217] gi|85670075|gb|EAQ24937.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. 217] Length = 582 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 241/592 (40%), Positives = 346/592 (58%), Gaps = 11/592 (1%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 AFLGVE S++G RW+ G E A A+ Q +P + + L V+ + A+ +L Sbjct: 1 MGPAFLGVEQSLTGRRWIG-PGVETDRLAEAMAQTTTLPRPLCQTLARLGVAEEDAEAYL 59 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P++R L+PDP L D ++AA R ++A+ E+I +F DYDVDG S AL++ +L Sbjct: 60 SPALRDLLPDPRSLRDMERAAARFLKAVKTGERIAVFADYDVDGGTSAALLIDWLRQMQA 119 Query: 122 N-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 +YIPDRI +GYGPN M LI+ VDCG+ S++A+ A +G DV+V+D Sbjct: 120 PTPTLYIPDRIDEGYGPNVPAMTDLAARH-DLILCVDCGTLSHEAI--AAAKGADVVVLD 176 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HH PA A+VNPNR D+ HLCAAGVVFL+LV R LR DL++ Sbjct: 177 HHLGGETLPPALAVVNPNRQDESGDLAHLCAAGVVFLMLVEAGRQLRAGG--TQGPDLMA 234 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LLDLVALATV DV PLIG+NRA+V +GL + R+ PGL AL + + + A +LG++ Sbjct: 235 LLDLVALATVADVAPLIGVNRAFVRQGLRIMARRDRPGLVALADVARMDTAPNAYHLGFL 294 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP +NAGGRIG+++LG+RLL D++ E LA +LD LN RR +E+ + A A+ Sbjct: 295 LGPRVNAGGRIGKADLGARLLACDNASEARALAERLDHLNTERRDVEALVRAAALAQAEE 354 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + D A ++ G+ WHPG+VG++A+RLKE RP+ I + +G GSGRS+ G D Sbjct: 355 RGLD---APLVWAAGEGWHPGVVGIVASRLKEVSNRPAIVIGL-DGDEGKGSGRSVSGVD 410 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + EG+L+KGGGH MAAGLTV R + ++D Sbjct: 411 LGVAIQRLASEGLLIKGGGHKMAAGLTVARERLEAAMARLSELLAKQGAGQNGPADLRLD 470 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G+L A + L+ ++SAGP+GAG P P + FP+ ++ + ++ AHL++ F + Sbjct: 471 GLLMPGAATVDLVAQIDSAGPFGAGAPGPRYVFPDCQITFAKALSGAHLKLRFGDGMGAS 530 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L AI F PLG L+ G R H+ G L +N W G + QLR+ DA+P Sbjct: 531 LDAICFGALDGPLGPALLAHGGARFHLAGRLDINSWGGRQTVQLRLEDAAPA 582 >gi|88658434|ref|YP_507899.1| single-stranded-DNA-specific exonuclease RecJ [Ehrlichia chaffeensis str. Arkansas] gi|88599891|gb|ABD45360.1| single-stranded-DNA-specific exonuclease RecJ [Ehrlichia chaffeensis str. Arkansas] Length = 589 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 231/579 (39%), Positives = 335/579 (57%), Gaps = 15/579 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 ++G W L ITQK I +IVARVL R V+I+ DFL P++R +PDP Sbjct: 14 VTGALW--KPYNVNFRDVLTITQKLGISEIVARVLSTRKVNIEEINDFLYPTLRSSLPDP 71 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA +RI AIYN E+I+IFGDYDVDGA S AL+ ++L+ V +YIPDRI Sbjct: 72 FHLLDMDKAIQRICHAIYNKERIVIFGDYDVDGATSSALIKQYLTQIGVPTTIYIPDRIC 131 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + K G L ITVDCG+ +++ + A + +DVIVIDHH + A Sbjct: 132 EGYGPNTQALLKLQEIGHSLCITVDCGTIAHEPISVAKSVNLDVIVIDHHMGLNTLPDAI 191 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250 A++NPNRLD+ S +L GV FL+LV + + L++ N +L++ LDLVAL TV Sbjct: 192 AVINPNRLDENSPYTYLAGVGVSFLMLVALNKTLKEKGFFTNNNEPNLINYLDLVALGTV 251 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P+IGLNRA+V +GL + + N GLK L + + + LG+ IGP INAGGR Sbjct: 252 CDVMPIIGLNRAFVKQGLKIMATRQNIGLKVLSDVIGLEDKPNTYQLGFNIGPHINAGGR 311 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G ++LG+RLL S+ +E ++ KL N R+ +E +A + Sbjct: 312 VGNASLGARLLSSNSEEEALEISEKLQNFNLERKELEHRSFNEAVEQAEALISTNTN--- 368 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +++ WHPGI+G++A RLK+KF PS IS + G G S RSI D+G + A Sbjct: 369 LIIVAGNWHPGIIGIVAGRLKDKFFLPSIVIS-LDKGIGKASARSIPDVDLGAAILSAKL 427 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 EGI+ +GGGHAMAAG +++ L +F + HNI VFK+DG++ A+AVN+ Sbjct: 428 EGIITEGGGHAMAAGFSIQEDKIKTLNEFLSQRFHNINK----QKVFKVDGIITAAAVNL 483 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L L+ P+G GNP P F N K+++ ++ +H++ + ++ I FR Sbjct: 484 TLWKELQFLEPFGIGNPEPRFILTNIKIKNPEIIGDSHIRC-LIHDNKTFIKGICFRCTD 542 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG L++ + + G + VNYW+G++ Q + DA Sbjct: 543 TELGLALLERTA--IMLLGKISVNYWKGNENIQFIIEDA 579 >gi|52081241|ref|YP_080032.1| RecJ exonuclease [Bacillus licheniformis ATCC 14580] gi|52786621|ref|YP_092450.1| YrvE [Bacillus licheniformis ATCC 14580] gi|52004452|gb|AAU24394.1| RecJ exonuclease [Bacillus licheniformis ATCC 14580] gi|52349123|gb|AAU41757.1| YrvE [Bacillus licheniformis ATCC 14580] Length = 782 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 189/593 (31%), Positives = 281/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + + I + A +LV R D A FL + D Sbjct: 3 ASKMRWDVQT--PDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L D +KA RRI QAI + EKIMI+GDYD DG S ++++ L CS A+ YIPDR Sbjct: 60 PYLLKDMEKAVRRIKQAISDQEKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN + G LIITVD G + A GID+I+ DHH+ A Sbjct: 120 KEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLIITDHHEPGPVLPDA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P + L GV F + + L +D LLDL A+ T+ Sbjct: 180 YAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPED-----------LLDLCAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGR 310 D+VPL NR +G+ R+ PGLKAL + E +G+ I P +NA GR Sbjct: 229 DLVPLHDENRQIAKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL ++D +E E LA ++ LN+ R+ + + M E+A + + D V Sbjct: 289 IEQADPAVYLLNTEDEREAEELAEDINALNKERQKIVNQMTEEAVQMIEEEGLDQ---PV 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L E+F RP+ + EE G GS RSI+GFD+ + +S Sbjct: 346 IVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQNLSEC- 404 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L + + A ++ PV +D ++ Sbjct: 405 -RDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDIS 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G GNP P + K+ R + HL++ D L I F Sbjct: 464 VDSIAEMNLLAPFGTGNPKPFVLVSDVKIDDARKIGANKNHLKLVLAD-DGNKLDCIGFY 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G ++ + G L +N W K+ QL + DA+ E F + Sbjct: 523 KGDIEEG----IVPGAKISIVGELSINEWNNRKKPQLMIKDAAVNEWQLFDLR 571 >gi|149202133|ref|ZP_01879106.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. TM1035] gi|149144231|gb|EDM32262.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp. TM1035] Length = 582 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 244/592 (41%), Positives = 348/592 (58%), Gaps = 11/592 (1%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 AFLGVE S++ RWV G E A A+ Q A+P + + L V D A+ +L Sbjct: 1 MQSAFLGVESSLTSRRWVG-PGVEADRLAEAMAQATALPRPLCQTLARLGVPEDAAEAYL 59 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P++R L+PDP L D ++AA R ++A+ E+I IF DYDVDG S AL++ +L Sbjct: 60 TPTLRDLLPDPRALRDMEQAAARFLKALRGGERIAIFADYDVDGGTSAALLIDWLRQMRA 119 Query: 122 N-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 +YIPDRI +GYGPN M LI+ VDCG+ S++A+ AT G DV+V+D Sbjct: 120 PSPTLYIPDRIDEGYGPNVPAMSDLAARH-DLIVCVDCGTLSHEAIAAAT--GADVVVLD 176 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HH PA+A+VNPNR D+ HLCAAGVVFL+LV R LR DL++ Sbjct: 177 HHLGGETLPPAHAVVNPNRQDESGDLAHLCAAGVVFLMLVEAGRQLRDSG--AQGPDLMA 234 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATV DV PLIG+NRA+V +GL V + PGL AL + + + A +LG++ Sbjct: 235 MLDLVALATVADVAPLIGVNRAFVRQGLRVMATRARPGLVALADVARMDTAPNAYHLGFL 294 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP +NAGGRIG+++LG+RLL D+ E +A +LD LN RR +E+ + + A A+ Sbjct: 295 LGPRVNAGGRIGKADLGARLLACDNPAEARAMAERLDQLNTERREVEAQVRDAALAQAEA 354 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + D A ++ G+ WHPG+VG++A+RLKE+ RP+ I + +G GSGRS+ G D Sbjct: 355 RGLD---APLVWAAGEGWHPGVVGIVASRLKERANRPAIVIGL-DGDEGKGSGRSVSGVD 410 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + EG+L+KGGGH MAAGLTV R + + ++D Sbjct: 411 LGAAIQRLASEGLLIKGGGHKMAAGLTVARERLEAAMARLSELLAKQGAGVGGAADLRLD 470 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G+L A + L++ +E+AGP+GAG P P + FP+ ++ + ++ AHL++ F + Sbjct: 471 GLLMPGAAAVELVEQIEAAGPFGAGAPGPRYVFPDCQITFAKALSGAHLKLRFGDGMGAS 530 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L AIAF PLG L+ G R H+ G L +N W G + QLR+ DA+P Sbjct: 531 LDAIAFGALDGPLGPALLNHGGARFHLAGRLDLNSWGGRQTVQLRLEDAAPA 582 >gi|319644792|ref|ZP_07999025.1| YrvE protein [Bacillus sp. BT1B_CT2] gi|317392601|gb|EFV73395.1| YrvE protein [Bacillus sp. BT1B_CT2] Length = 782 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 188/593 (31%), Positives = 282/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + + I + A +LV R D A FL + D Sbjct: 3 ASKMRWDVQT--PDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L D +KA RRI QAI + EKIMI+GDYD DG S ++++ L CS A+ YIPDR Sbjct: 60 PYLLKDMEKAVRRIKQAISDQEKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN + G LIITVD G + A GID+I+ DHH+ A Sbjct: 120 KEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLIITDHHEPGPVLPDA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P + L GV F + + L +D LLDL A+ T+ Sbjct: 180 YAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPED-----------LLDLCAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGR 310 D+VPL NR +G+ R+ PGLKAL + E +G+ I P +NA GR Sbjct: 229 DLVPLHDENRQIAKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL ++D +E E LA ++ LN+ R+ + + M E+A + + D V Sbjct: 289 IEQADPAVNLLNTEDEREAEELAEDINALNKERQKIVNQMTEEAVQMIEEEGLDQ---PV 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L E+F RP+ + +E+ G GS RSI+GFD+ + +S Sbjct: 346 IVVARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQNLSEC- 404 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L + + A ++ PV +D ++ Sbjct: 405 -RDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDIS 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G GNP P + K+ R + HL++ D L I F Sbjct: 464 VDSIAEMNLLAPFGTGNPKPFVLVSDVKIDDARKIGANKNHLKLVLAD-DGNKLDCIGFY 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G ++ + G L +N W K+ QL + DA+ E F + Sbjct: 523 KGDIEEG----IVPGAKISIVGELSINEWNNRKKPQLMIKDAAVNEWQLFDLR 571 >gi|157803729|ref|YP_001492278.1| transcription termination factor Rho [Rickettsia canadensis str. McKiel] gi|157784992|gb|ABV73493.1| transcription termination factor Rho [Rickettsia canadensis str. McKiel] Length = 585 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 222/595 (37%), Positives = 334/595 (56%), Gaps = 19/595 (3%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 M +A SI+G W + E I + + + I D++AR++ R ++ ++F Sbjct: 1 MKPRA------SINGKIWQQKVINEDI--VMELCRSFKISDLLARIVSLRVNNLAEVENF 52 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L P I+ L+PDP L D KA R V+AI N++KI IF DYDVDGA S AL+ + Sbjct: 53 LIPKIKNLLPDPFHLLDMAKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLN 112 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 + ++Y+PDRI +GYGP P ++K + +L+ITVDCG+ +++AL+YA + +DVIVID Sbjct: 113 IICDIYVPDRIAEGYGPTPFAIQKIKDNSTELLITVDCGTMAHEALKYAKDISLDVIVID 172 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDL 238 HH A A++NPNR+D+ S HL A GV FL I L+Q N +L Sbjct: 173 HHIATEILPDAVAIINPNRIDEKSEYKHLAAVGVAFLFATAILSNLKQQNYFTKSPQPNL 232 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 ++ LDLVAL TVCD+V L G+NRA+V GL V +++ N G+K L + V ++ +LG Sbjct: 233 INYLDLVALGTVCDMVKLTGINRAFVASGLKVMQQRQNIGIKTLYDIVGLNEIPKCYHLG 292 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +++GP INAGGR+G+S+LG+ LL + S E LA +L+ N R+L+E M+E+A Sbjct: 293 FILGPRINAGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKLIELLMIEEAMEIA 352 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 TQ Q +S++ + + WHPG++G++A RLKEKF +P ++ + G G S RSI G Sbjct: 353 WTQ----QDSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALND-GIGKASCRSITG 407 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D G + A G+L+ GGGH MAAG TV L +F + L + Sbjct: 408 IDFGAEIINAKNHGLLIAGGGHTMAAGFTVTAEKLQELQEFLNNAFRTSINKLENYKQVE 467 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF----E 534 D L+ +++N+ L++ L S P+G GN P+F F N + +V H++ + Sbjct: 468 YDLDLSLNSINLHLMEELSSIEPFGQGNHEPIFKFDNLFVLKAYIVGSKHIKALLVHNTQ 527 Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 S+ L AIAF GT E L+ + K + G L + W+ + QL + D Sbjct: 528 GSGSKALSAIAFNSVGTAFEEVLLSPKAKNIAAIGTLRTSNWQDNYTIQLIIKDI 582 >gi|146340534|ref|YP_001205582.1| putative single-stranded-DNA-specific exonuclease recJ [Bradyrhizobium sp. ORS278] gi|146193340|emb|CAL77356.1| putative single-stranded-DNA-specific exonuclease recJ [Bradyrhizobium sp. ORS278] Length = 613 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 281/592 (47%), Positives = 375/592 (63%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 QAFLGV S++ W L G RALAI Q++ +P+++ARVL R+V++D +DFL+ Sbjct: 13 PQAFLGVRLSLTNKLWRDRLDTRGAARALAIVQRYQLPEMLARVLAGRDVALDAVQDFLD 72 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP +T + AA+RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 73 PTIRKLMPDPFTVTQMEAAAQRIADAAVKGEKVAIFGDYDVDGATSAALLAWHLRHCGLD 132 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN + N+GA L++TVDCG+TS + L A G+ V+VIDHH Sbjct: 133 PLIHIPDRIFEGYGPNTDAIRALANKGATLLVTVDCGTTSLEPLAEARRLGMSVVVIDHH 192 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239 Q E ALVNPNR DDLSG G+L A G+ F+ LV + R LR DLL Sbjct: 193 QCGEELPEVEALVNPNRPDDLSGLGYLAAVGLTFVTLVAVNRELRSRGFWSGTRPEPDLL 252 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 S+L VAL TV DV PLI LNRA+V KGL+ RR+ + G AL++ ++ P A +LG+ Sbjct: 253 SMLHHVALGTVADVAPLIALNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGF 312 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ L Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQQAEAQAEAEAL 372 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + +VIV + WHPG+VGL+A+RLKEKF RP+FAI+ E G G GSGRSI G Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFARPAFAIALEPGGIGTGSGRSIPGV 432 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+GK V AVE+G+L+KGGGHAMAAG+T+ + + + V I Sbjct: 433 DLGKAVRHAVEQGLLMKGGGHAMAAGVTLRKERLAEFRAYLENALAADVAEARHVNEILI 492 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A A L++ L AGP+G+GNP P+ A P+H+L V AHL++ F+S D Sbjct: 493 DGAISARAATPELVNTLNRAGPFGSGNPEPIVALPSHQLVYADEVGQAHLKLRFKSGDGA 552 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T+ AIAFR G LG L+Q RG+ +HV G L V+ ++G +R QLRVLD + Sbjct: 553 TVNAIAFRSVGQRLGNALVQHRGQVLHVAGTLTVDRYQGVERVQLRVLDVAV 604 >gi|125973861|ref|YP_001037771.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum ATCC 27405] gi|256004315|ref|ZP_05429297.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum DSM 2360] gi|281418022|ref|ZP_06249042.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum JW20] gi|125714086|gb|ABN52578.1| exonuclease RecJ [Clostridium thermocellum ATCC 27405] gi|255991749|gb|EEU01849.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum DSM 2360] gi|281409424|gb|EFB39682.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum JW20] gi|316939941|gb|ADU73975.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum DSM 1313] Length = 827 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 195/577 (33%), Positives = 306/577 (53%), Gaps = 23/577 (3%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRI 85 + +++K I ++A + ++R V KDFLNPS+ L DP L D +KA RI Sbjct: 14 DEKVEKLSKKAGISKLLAGIFLSRGVDDPDYIKDFLNPSLDKLH-DPFELRDMEKAVDRI 72 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 V+A+ +EKI+I+GDYDVDG S +++ F + + YIPDR+ +GYG + + EK Sbjct: 73 VKALRQNEKILIYGDYDVDGITSTSILYDFFRRQNADVCYYIPDRLNEGYGISMAAAEKM 132 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVDCG T+++ ++Y T+ ID+I+ DHH+ + A A+VNP+R D Sbjct: 133 PEMDVDLVITVDCGITAFEEVKYITDNNIDIIITDHHECRESVPDALAVVNPHRFDCAYP 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 L GV + +L + + + LDLVAL TV DVVPL+G NR V Sbjct: 193 FKELAGVGVAYKLLEALSKKMNIPGFE------RQYLDLVALGTVADVVPLLGENRIIVK 246 Query: 266 KGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324 GL + + N GL++LI+ I + I +G+++ P INA GRIG+++ RLL +D Sbjct: 247 YGLPMIEKTSNVGLRSLIKVAGIENKEINTFLVGFVLAPRINAAGRIGDASRAVRLLTTD 306 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384 + +E +A +LD N R+ E ++E+A + T D+Q+ VIVV G+RWH G++G Sbjct: 307 NEEEALEIAKELDEQNIFRKQNELEIMEEAVNIIET-GIDLQREKVIVVAGERWHHGVIG 365 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444 ++++++ E++ RPS IS + +G GS RSIEGF++ + +L K GGH AA Sbjct: 366 IVSSKITERYYRPSVLISVDGEG-AKGSARSIEGFNL--FEALVHCGKVLEKYGGHEQAA 422 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GL ++ N ++A +++ P KID + + + L+ P+G Sbjct: 423 GLALKPENIDEFRRMINEYADSVLDEDDLVPRMKIDVRITKEDMTLENCKELKLLEPFGE 482 Query: 505 GNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 NP PVF + N K+ IR V H ++ F + + AI F G L + S Sbjct: 483 SNPPPVFRYDNLKVHEIRPVGQDSRHAKIRF-DDNGTLIDAICFN--GGGLTDCYELS-- 537 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASP---VEGHH 596 + V + +N W G + QL + D P VE + Sbjct: 538 DIVDVVCSMEINLWNGRENVQLNIKDIRPGLAVERQN 574 >gi|120437681|ref|YP_863367.1| single-stranded-DNA-specific exonuclease RecJ [Gramella forsetii KT0803] gi|117579831|emb|CAL68300.1| single-stranded-DNA-specific exonuclease RecJ [Gramella forsetii KT0803] Length = 564 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 170/579 (29%), Positives = 276/579 (47%), Gaps = 24/579 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 RW + ++ +K I VA++LV R +S AK F P ++ L DP ++ Sbjct: 2 RWTLKP-KPDPITVNSLAEKLGIGIPVAKLLVQRGISSFKEAKKFFRPDLKDLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI +AI N E IM++GDYDVDG SVALM FL N YIPDR +GY Sbjct: 60 KDMDKAVDRIEKAIENEENIMVYGDYDVDGTTSVALMSSFLKFRYPNVTTYIPDRYEEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + + + YA +GID ++ DHH+ SE A A++ Sbjct: 120 GVSYKGIDYAADNDISLIIALDCGIKAIEKVAYAKEKGIDFVICDHHRPGSEIPNAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ I + + LL LDLVA A D+VP Sbjct: 180 DPKREDCSYPYDELCGCGVGFKLIQAITQKNNE-----PEEVLLPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G+K+L + ++ ++ +++ P INA GR+ Sbjct: 235 ITGENRILAYHGLHVINVAPRKGIKSL---LGDRKNVSITDVVFIVAPRINAAGRMKHGL 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL +D + A ++++ N +RR + + E+A+ +++ + VV Sbjct: 292 HAVNLLSEEDEAISKKYAEEIEIYNTDRRSADKTITEEAKQQII--NSKEEDRITTVVYD 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + + + S RS++G+D+ + + E + Sbjct: 350 ENWHKGVIGIVASRLTETWYRPTLVFTKSGE-RLAASARSVKGYDVYEALEGCKEH--IE 406 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + F++ + + TP ID L+ + + Sbjct: 407 QFGGHKYAAGLTLLESEYLNFKKKFEEVVSETIDRNLLTPEIGIDAELDLKDITPKFYRI 466 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551 L+ P+G GN +PVF + V HL+ + + S+ T I F + Sbjct: 467 LKQFAPFGPGNMSPVFISRGLTDTGYGKCVGEDKTHLKCQVKQEGSKATFDVIGFNLGE- 525 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + GK+ L N W G+ + QL++ D Sbjct: 526 ---KLDLIKDGKKFDAVYSLDENTWNGNTKIQLKLKDIR 561 >gi|294084054|ref|YP_003550812.1| single-stranded DNA-specific exonuclease [Candidatus Puniceispirillum marinum IMCC1322] gi|292663627|gb|ADE38728.1| Single-stranded DNA-specific exonuclease [Candidatus Puniceispirillum marinum IMCC1322] Length = 605 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 226/600 (37%), Positives = 334/600 (55%), Gaps = 14/600 (2%) Query: 1 MNDQAFLGVECSISGFRWV----SLLGQEGINRALAITQKH-AIPDIVARVLVNRNVSID 55 M A LG+ S S RW SL + + + +P +AR+L +R +S Sbjct: 1 MTPDACLGITQSASDARWDHISASLNAHDTDRYTAGLQEHFADMPLPIARILASRGISAI 60 Query: 56 YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115 + ++P +R L+PDP D DKA RI ++ + I IFGDYDVDGA++ AL + Sbjct: 61 EVETLIDPRLRDLLPDPSRFKDMDKAVARIADSVEAGDAIGIFGDYDVDGASAAALFVNV 120 Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175 + + ++IPDR +GYGPN + + + +GA L++TVDCG +++ L + G+D Sbjct: 121 MRALHIETFVHIPDRFKEGYGPNANALTRLQEKGASLLLTVDCGISAHAPLAAVADSGMD 180 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 VIVIDHH E A++++NPNRLD+ GHLCAAGV F+VLV + R LRQ Sbjct: 181 VIVIDHHIAGPELPRAHSVINPNRLDEDGRYGHLCAAGVCFIVLVGVLRALRQRGFFEDR 240 Query: 236 --FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293 DLL LDLVALATVCDVVPL LNRA+V +GL + + N GL L + ++S Sbjct: 241 KAPDLLQQLDLVALATVCDVVPLTDLNRAFVAQGLKIMANRHNHGLARLADVAGMNSAPN 300 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 LG++IGP INA GRIG S LG +LL E LA +LD +N+ RR +E + Sbjct: 301 PYALGFLIGPRINAAGRIGVSELGVKLLSCQREDEAIGLAARLDEMNKERRSIEDDIRAH 360 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 A + Q V+VV + WH G++G++A RLK++F +P+ I+F DG G GS Sbjct: 361 AMDRASAQS----DNHVLVVGDEAWHEGVIGIVAGRLKDRFAKPACVIAFSPDGLGKGSA 416 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RSI GF IG + A + G+L GGGH MAAG ++ + F + + + I Sbjct: 417 RSIPGFAIGNAIIAAHQMGLLEGGGGHDMAAGFSIMKDKLAAFQAFMNQRLLDDLKGEIP 476 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531 K+ +L+ + + D L+ GP+G+GNP P F P+ ++++IR+V AH+ Sbjct: 477 KVSHKVSALLSVAGCQPEVSDWLDKLGPFGSGNPEPRFVLPDCRIKNIRLVGDAGAHVSC 536 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L AIAF+ G P+G+ L Q + G+ +H+ G L + +RG + Q+ + D + Sbjct: 537 RLDDGSGTALNAIAFQAGGAPIGQLLQQAADGRYLHILGKLRRDRYRGGRAMQIEIEDVA 596 >gi|329850707|ref|ZP_08265552.1| single-stranded-DNA-specific exonuclease RecJ [Asticcacaulis biprosthecum C19] gi|328841022|gb|EGF90593.1| single-stranded-DNA-specific exonuclease RecJ [Asticcacaulis biprosthecum C19] Length = 618 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 225/608 (37%), Positives = 337/608 (55%), Gaps = 18/608 (2%) Query: 2 NDQAFLGVECSISGFRWVSLL--GQEGINRALAITQKHAI-----P---DIVARVLVNRN 51 + +LGV S++G W L + ITQ+ + P D +AR + R Sbjct: 12 VSEPYLGVTASLTGRGWSERLAAQKVAPETLREITQRLGLMNVAEPAFLDPLARFIAGRG 71 Query: 52 VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL 111 ++ D F++P+++ L PDP D D+A +++A+ KI +F DYDVDGA S A Sbjct: 72 ITPDSLDTFIHPTLKALFPDPSSFMDMDRAVEAMLEALQAKAKICVFADYDVDGATSAAQ 131 Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171 ++R+ H + +Y+PDR+ +GYGP+ + + +GA L+ITVDCG+ ++ AL +A Sbjct: 132 LVRWFRHMGHDLTVYVPDRVTEGYGPSNAAFDTLKRQGADLVITVDCGAMAHRALDHAAE 191 Query: 172 QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK 231 G+DV+VIDHH ++ + A A+VNPNR S QG+L AAGVVF+VL + R + Sbjct: 192 IGLDVVVIDHHLMREDPPRALAVVNPNRPGCTSAQGNLAAAGVVFVVLAALNREAEKRGL 251 Query: 232 V--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS 289 DL+ LDL AL +CDV L G NRA +GL + ++ NPG+ AL++ + Sbjct: 252 FAGRGRPDLMQWLDLSALGAICDVTALTGFNRALAAQGLKIMSQRKNPGINALMDIAGSA 311 Query: 290 SP----ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 S ++ + G++IGP INAGGR+G S+LG RLL +DD E LA +LD LN+ RR Sbjct: 312 SEAGKLMSTFHSGFVIGPRINAGGRVGRSDLGVRLLSTDDPVEAASLAQELDELNRLRRD 371 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 +E+ +LEQA Q VIVV WHPG++G++A RL+E++ RP I + Sbjct: 372 VETQVLEQAARVAEDQGLWPSDDPVIVVAHQDWHPGVIGIVAGRLRERWHRPVIIIGVDP 431 Query: 406 -DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 G G GSGRS G ++G+ V A E G+L+ GGGHAMAAGL+VER L F + Sbjct: 432 VSGMGKGSGRSQAGVNLGEAVGAAFESGLLLSGGGHAMAAGLSVERDRIADLRRFLNDYI 491 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 H V +ID L+ A + L D + P+G GNP P+ AF + ++ + + Sbjct: 492 HTHVAEADQVETVEIDAALSLKAASRDLFDRFDLLAPFGQGNPEPLLAFTDVRVAFAQAM 551 Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584 H++ ++AI +R GT LG+ L++ GK +HV L + + G + QL Sbjct: 552 KGGHVRCELLDDSGAKVKAIIWRAEGTALGDALLRPSGK-VHVLARLKADDYMGRRGIQL 610 Query: 585 RVLDASPV 592 + D + V Sbjct: 611 EIEDIALV 618 >gi|283856427|ref|YP_162966.2| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis subsp. mobilis ZM4] gi|283775429|gb|AAV89855.2| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis subsp. mobilis ZM4] Length = 586 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 246/590 (41%), Positives = 348/590 (58%), Gaps = 15/590 (2%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67 GV S G W G + ++ + D++ R+L+ R + + +P I+ Sbjct: 7 GVSSSALGQAWQWRGQNSGF------SGENPLEDLIDRILITRGCPRESLSAYRDPKIKN 60 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 MPDP +L D D+AA R+ +AIY E I+IFGDYDVDGA S ALM+ L VNA YI Sbjct: 61 FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDR+ +GYGP M K EGA L++TVDCG+ +Y+AL+ A G+DV+V+DHHQ + + Sbjct: 121 PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ 180 Query: 188 EIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243 A+A+VNPNRLD+ + GHL A GV FL+ + R LRQD L++LLD Sbjct: 181 LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVAL TV DV L GLNRA+V +GL V + PG+ AL++ +S P T +LG+++GP Sbjct: 241 LVALGTVADVAALHGLNRAFVAQGLKVMAARHRPGIAALLDVAGVSRPPTTYDLGFILGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGR+G+S+LG RLL S D E E LA+ L+ N RR +E + E AE Q Sbjct: 301 RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQTVTEAAEGLCEEQV- 359 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + V+VV G+ WHPG++G++A RLK+K+ RP I +E+G G GSGRS+ G D+G Sbjct: 360 ---ERPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 V A + G+LV GGGHAMAAGL++++ F + V ID VL Sbjct: 417 AVLSAKQAGLLVNGGGHAMAAGLSIKKDQIEDFSTFISERVQKDVETARANKALLIDEVL 476 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +A VN++LI+ LE+ GPYGAG P+P R++ HL + F+ QD ++ +A Sbjct: 477 SAGGVNLSLIEALEAGGPYGAGWPSPHIVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKA 536 Query: 544 IAFRVYGTPLGEFLMQS-RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF TP+ + ++ + R +++ V G + +N W G K QL + D + Sbjct: 537 IAFNAVETPITQMVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA 586 >gi|260752349|ref|YP_003225242.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551712|gb|ACV74658.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 586 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 246/590 (41%), Positives = 348/590 (58%), Gaps = 15/590 (2%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67 GV S G W G + ++ + D++ R+L+ R + + +P I+ Sbjct: 7 GVSSSALGQAWQWRGQNSGF------SGENPLEDLIDRILITRGCPRESLSAYRDPKIKN 60 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 MPDP +L D D+AA R+ +AIY E I+IFGDYDVDGA S ALM+ L VNA YI Sbjct: 61 FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDR+ +GYGP M K EGA L++TVDCG+ +Y+AL+ A G+DV+V+DHHQ + + Sbjct: 121 PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ 180 Query: 188 EIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243 A+A+VNPNRLD+ + GHL A GV FL+ + R LRQD L++LLD Sbjct: 181 LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVAL TV DV L GLNRA+V +GL V + PG+ AL++ +S P T +LG+++GP Sbjct: 241 LVALGTVADVAALHGLNRAFVAQGLKVMAARHRPGIAALLDVAGVSRPPTTYDLGFILGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGR+G+S+LG RLL S D E E LA+ L+ N RR +E + E AE Q Sbjct: 301 RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQIVTEAAEGLCEEQV- 359 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + V+VV G+ WHPG++G++A RLK+K+ RP I +E+G G GSGRS+ G D+G Sbjct: 360 ---ERPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 V A + G+LV GGGHAMAAGL++++ F + V ID VL Sbjct: 417 AVLSAKQAGLLVNGGGHAMAAGLSIKKDQIEDFSTFISERVQKDVETARANKALLIDEVL 476 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +A VN++LI+ LE+ GPYGAG P+P R++ HL + F+ QD ++ +A Sbjct: 477 SAGGVNLSLIEALEAGGPYGAGWPSPHIVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKA 536 Query: 544 IAFRVYGTPLGEFLMQS-RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF TP+ + ++ + R +++ V G + +N W G K QL + D + Sbjct: 537 IAFNAVETPITQMVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA 586 >gi|241762072|ref|ZP_04760156.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373538|gb|EER63125.1| single-stranded-DNA-specific exonuclease RecJ [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 586 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 246/590 (41%), Positives = 348/590 (58%), Gaps = 15/590 (2%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67 GV S G W G + ++ + D++ R+L+ R + + +P I+ Sbjct: 7 GVSSSALGQAWQWRGQNSGF------SGENPLEDLIDRILITRGCPRESLSAYRDPKIKN 60 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 MPDP +L D D+AA R+ +AIY E I+IFGDYDVDGA S ALM+ L VNA YI Sbjct: 61 FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDR+ +GYGP M K EGA L++TVDCG+ +Y+AL+ A G+DV+V+DHHQ + + Sbjct: 121 PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ 180 Query: 188 EIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243 A+A+VNPNRLD+ + GHL A GV FL+ + R LRQD L++LLD Sbjct: 181 LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVAL TV DV L GLNRA+V +GL V + PG+ AL++ +S P T +LG+++GP Sbjct: 241 LVALGTVADVAALHGLNRAFVAQGLKVMAARYRPGIAALLDVAGVSRPPTTYDLGFILGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGR+G+S+LG RLL S D E E LA+ L+ N RR +E + E AE Q Sbjct: 301 RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQTVTEAAEGLCEEQV- 359 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + V+VV G+ WHPG++G++A RLK+K+ RP I +E+G G GSGRS+ G D+G Sbjct: 360 ---ERPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 V A + G+LV GGGHAMAAGL++++ F + V ID VL Sbjct: 417 AVLSAKQAGLLVNGGGHAMAAGLSIKKNQIEDFATFISERVQKDVETARANKALLIDEVL 476 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +A VN++LI+ LE+ GPYGAG P+P R++ HL + F+ QD ++ +A Sbjct: 477 SAGGVNLSLIEALEAGGPYGAGWPSPHVVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKA 536 Query: 544 IAFRVYGTPLGEFLMQS-RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF TP+ + ++ + R +++ V G + +N W G K QL + D + Sbjct: 537 IAFNAVETPITQIVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA 586 >gi|15965474|ref|NP_385827.1| single-stranded-DNA-specific exonuclease protein [Sinorhizobium meliloti 1021] gi|307302595|ref|ZP_07582351.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium meliloti BL225C] gi|307318442|ref|ZP_07597876.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium meliloti AK83] gi|15074655|emb|CAC46300.1| Probable single-stranded-DNA-specific exonuclease [Sinorhizobium meliloti 1021] gi|306895782|gb|EFN26534.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium meliloti AK83] gi|306902959|gb|EFN33550.1| single-stranded-DNA-specific exonuclease RecJ [Sinorhizobium meliloti BL225C] Length = 600 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 335/590 (56%), Positives = 430/590 (72%), Gaps = 1/590 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S+SG RWVS L Q G NRALAI+Q H +++ARVL R V +D A FL P Sbjct: 10 RAFLGVERSVSGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGLDDAAAFLEP 69 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R LMPDP LTD KAA R+ AI EK++IFGDYDVDGAAS ALM RFL H + A Sbjct: 70 TLRALMPDPDTLTDGRKAAERLADAIRRREKVVIFGDYDVDGAASSALMARFLRHFDITA 129 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP +++ I+ G++LI+TVDCGSTS++AL A + DV+VIDHHQ Sbjct: 130 EIYIPDRIFEGYGPNPQAIDQLIDRGSELIVTVDCGSTSHEALAVAAERRTDVVVIDHHQ 189 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLL 242 V S P +ALVNPNR DDLSGQGHLCAAGVV+LVLV R+LR +FDLLSLL Sbjct: 190 VGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLRGDPRAASFDLLSLL 249 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALATVCDVVPL GLNRAYVVKGL+ AR GN GL AL+ + I P+T +LG+++G Sbjct: 250 DLVALATVCDVVPLKGLNRAYVVKGLLAARHMGNAGLAALLRKAAIGGPVTPYHLGFLLG 309 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG++ LGSRLL D + E +A +LD LN++R+ ME+AML +AEA+VL + Sbjct: 310 PRINAGGRIGDAALGSRLLTLDVAAAAEAIASQLDELNRDRQAMEAAMLAEAEAEVLAEY 369 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 + ASVIV WHPGIVGL+AAR+KEKF RP+FAI+F+ +G+G GSGRSI GFD+G Sbjct: 370 GTGEGASVIVTARQNWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSGRSINGFDMG 429 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 ++V AV+ G+LVKGGGHAMAAGLTVER G+L FF++ A + L+ K+DG Sbjct: 430 RLVRAAVDNGLLVKGGGHAMAAGLTVERGKLGQLRQFFEERAETAIRDLVAVQTLKVDGA 489 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L A+ + L+D+L+ AGPYG+G+P P+FAFP H+L+ R V H+++T E QD ++ Sbjct: 490 LAAAGATLDLVDLLDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTLEGQDGSRME 549 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAFR TPLG+FL+ +RG +HV G + + W+G+++ QLRV DA+ Sbjct: 550 GIAFRAAETPLGDFLLGNRGATVHVAGSVSADLWQGTRKVQLRVTDAAKA 599 >gi|92117830|ref|YP_577559.1| single-stranded-DNA-specific exonuclease RecJ [Nitrobacter hamburgensis X14] gi|91800724|gb|ABE63099.1| exonuclease RecJ [Nitrobacter hamburgensis X14] Length = 613 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 278/591 (47%), Positives = 367/591 (62%), Gaps = 3/591 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 AFLGV S +G W L G RALAI Q+H +P+++ARV+ R V +D DFL+ Sbjct: 13 PDAFLGVSHSATGRLWRDRLDARGAARALAIAQRHQLPEMLARVIAGRGVEVDAVADFLD 72 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP +T + AA+R+ A E + IFGDYDVDGA S AL+ L HC ++ Sbjct: 73 PTIRRLMPDPFTVTQMEAAAKRLADAAMRGETVAIFGDYDVDGATSAALLAWHLRHCGLD 132 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN + GA L++TVDCG+TS + L A QG+ V+VIDHH Sbjct: 133 PLIHIPDRIFEGYGPNVEAINALAARGATLLVTVDCGTTSIEPLAVAKQQGMSVVVIDHH 192 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLL 239 Q + ALVNPNR DDLSG GHL A G+V + LV + R LRQ DLL Sbjct: 193 QCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVLVTLVALNRELRQRGFWTDERPEPDLL 252 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 ++L VAL TV DV PL GLNRA+V KGL+ RR+ + G AL++ ++ P A +LG+ Sbjct: 253 NMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEAWHLGF 312 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E A QAEA+ L Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNVERRVIEQAAEAQAEAEAL 372 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + +VIV + WHPG+VGL+A+RLK+KF RP+F ++ E G G GSGRSI G Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKDKFSRPAFVVALEPGGIGTGSGRSIGGV 432 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+GK V AV +G+L+KGGGHAMAAG+T+ + + +K V I Sbjct: 433 DLGKAVRQAVTDGVLLKGGGHAMAAGVTLRKERLAEFRAYMEKALAADVARSRHVRELFI 492 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A AV + L AGP+GAGNP PV A P+H+L V AHL++ F+S D Sbjct: 493 DGAVSARAVTPEFVATLNRAGPFGAGNPEPVVALPSHQLIYADEVGQAHLRLRFKSGDGA 552 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + IAFR G PLG L Q RG+ +HV G L V+ W+G++R QLRV D + Sbjct: 553 IVNGIAFRAIGQPLGNVLTQMRGQPLHVAGSLAVDRWQGAERVQLRVSDVA 603 >gi|255264521|ref|ZP_05343863.1| single-stranded-DNA-specific exonuclease RecJ [Thalassiobium sp. R2A62] gi|255106856|gb|EET49530.1| single-stranded-DNA-specific exonuclease RecJ [Thalassiobium sp. R2A62] Length = 582 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 256/592 (43%), Positives = 354/592 (59%), Gaps = 10/592 (1%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 M D FLGV S++G RWV + A A+ Q +P + R LV R V A F Sbjct: 1 MVDNGFLGVAASVTGRRWVGPTADQD-RLAQAMAQDSDLPLPICRTLVRRGVPAPEASAF 59 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L P++R LMPDP L D ++AA R VQA+ EKI IF DYDVDG AS AL++ +L + Sbjct: 60 LTPALRDLMPDPRSLLDMERAALRCVQALKKREKIAIFADYDVDGGASAALLLAWLRAMN 119 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 +A +YIPDRI +GYGPN + M+K ++ LI+ VDCG+ S+ ++ A + DV+V+D Sbjct: 120 HDATLYIPDRIDEGYGPNDAAMKKLADQH-DLIVCVDCGTLSHGPIEAAQSA--DVVVLD 176 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HH PA+++VNPNR D+ HLCAAGVVF++LV R +RQD+ DL+S Sbjct: 177 HHLGGETLPPAHSVVNPNRQDETGDLAHLCAAGVVFMMLVEANRQMRQDDV--KGPDLMS 234 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATV DV PLIGLNRA+V GL V ++ GL AL + + + T+ +LG++ Sbjct: 235 MLDLVALATVADVAPLIGLNRAFVRTGLQVMAQRKRIGLVALADVARMDAAPTSYHLGFL 294 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP +NAGGRIG +++G+RLL S D E LA +LD LN RR +E + A ++ Sbjct: 295 LGPRVNAGGRIGAADMGARLLASTDMNEARALAERLDQLNSERREIEGQVRAAATDQMEQ 354 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + Q A ++ GD WHPG+VG++A+R+KE+ RPS I + +G GSGRS+ G D Sbjct: 355 R---DQSAPLVWAAGDGWHPGVVGIIASRIKEQTNRPSIVIGL-DGDEGKGSGRSVSGID 410 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + EG+L+KGGGH MAAGLTV R + + K+D Sbjct: 411 LGAAIQRVAAEGLLIKGGGHKMAAGLTVARAQLEPAMARLSELLGKQGAGELGPSDLKLD 470 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 GVL SA LI LE AGP+GAG P FAFP+ ++ + V +HL++TF Sbjct: 471 GVLMPSAATPELIAQLEQAGPFGAGASAPRFAFPDVQINFAKRVGDSHLKITFGDGMGAR 530 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 ++AI+F + PLG L + G R H+ G L +N W+G R QLR+ DA+P Sbjct: 531 IEAISFGAFDGPLGPTLEKHGGARFHLAGRLEINSWQGRDRVQLRLEDAAPA 582 >gi|303238658|ref|ZP_07325191.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio cellulolyticus CD2] gi|302593777|gb|EFL63492.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio cellulolyticus CD2] Length = 829 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 208/582 (35%), Positives = 315/582 (54%), Gaps = 21/582 (3%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73 WV E + L I+++ I ++A+V ++R + + K+FLNPS+ L DP Sbjct: 4 NKLWVINKIPE--EKILKISKQCGISALLAKVFLSRGIEDEDYIKEFLNPSMNDLF-DPF 60 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D +KA RI+ A+ EKI+IFGDYDVDG S +++ FL N YIPDR + Sbjct: 61 LLRDMEKAVERIINAVEKKEKIIIFGDYDVDGITSTSILFDFLKKVGANVGYYIPDRKEE 120 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++K I++GA LIITVDCG T+++ +++ +D+I+ DHH+ K E AYA Sbjct: 121 GYGLSIIAVDKVIDDGASLIITVDCGITAFEEVRHIIESHVDIIITDHHECKEELPEAYA 180 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 L+NP R D L GVVF ++ + + ++ ++ LDLVAL TV DV Sbjct: 181 LINPCRHDCSYPFKELAGVGVVFKLVKALCIKMGLTDES------VNYLDLVALGTVADV 234 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VPLI NR V GL N GLKALI+ IT+ +G+++ P INA GRIG Sbjct: 235 VPLIEENRVIVKYGLQKIENTLNTGLKALIDVSGSKDKQITSYVIGFVLAPRINAAGRIG 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++ RLL +D+ E +A +L N R+ E +L + A + Q D+ + VIV Sbjct: 295 DASRAVRLLTTDNEDEAAQIAKELSEQNTYRQETEHNILCEVMAGI-EQYVDLDKEKVIV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V G WH GI+G++A+++ E + RP I+ EDG G GSGRSIE F++ + Sbjct: 354 VWGKGWHHGIIGIVASKITESYNRPCILIT-VEDGMGKGSGRSIEEFNL--FKALMDSSS 410 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L K GGH +AAGLT++ N +A++I+ P KID ++ ++ Sbjct: 411 LLEKFGGHELAAGLTIKEDNIQEFKTKINAYANSILNDSDLVPKVKIDIEVSKEDISEES 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGT 551 + L+ P+GAGNP+PVFA+ N ++ IR V H+++TF ++++ AI F Sbjct: 471 VRQLDLMSPFGAGNPSPVFAYRNLVIKDIRAVGNNKHIKITFRDKETD-FDAIGF--SRG 527 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L E +S + L +N W + QL + D E Sbjct: 528 YLAEVYSES--DILDAACSLEINSWNNRESVQLNIKDLKVCE 567 >gi|115524940|ref|YP_781851.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopseudomonas palustris BisA53] gi|115518887|gb|ABJ06871.1| exonuclease RecJ [Rhodopseudomonas palustris BisA53] Length = 613 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 281/593 (47%), Positives = 370/593 (62%), Gaps = 3/593 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 AFLGV S +G W L G RALAI Q++ +P+++ARVL RNV ID DFL Sbjct: 12 TPLAFLGVTRSATGRIWRDRLDIRGTARALAIAQRYQLPEMLARVLAGRNVEIDAVADFL 71 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+IR L+PDP +T+ + AA+RI A E++ IFGDYDVDGA S AL+ L HC + Sbjct: 72 DPTIRNLLPDPHTVTEMEAAAKRIADAALRGEQVAIFGDYDVDGATSAALLAWHLRHCGL 131 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + ++IPDRI +GYGPN + +GA L++TVDCG+TS + L A G+ V+VIDH Sbjct: 132 DPLIHIPDRIFEGYGPNVEAVRGLAQKGATLLVTVDCGTTSLEPLAEAAKLGMAVVVIDH 191 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDL 238 HQ E ALVNPNR DDLSG GHL A G+VF+ LV + R LRQ +L Sbjct: 192 HQCGEELPIVEALVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRQRGFWTTERPEPNL 251 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L +L VAL TV DV PLIGLNRA+V KGL+ RR+ + G AL++ ++ P A +LG Sbjct: 252 LDMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLG 311 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ Sbjct: 312 FMLGPRINAGGRIGRADLGVRLLLEGDISEAAKIAAELDRLNSERRVIEQMAEAQAEAEA 371 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 L + +VIV + WHPG+VGL+A+RLKEKFGRP+FAI+ E G G GSGRSI G Sbjct: 372 LASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGLGTGSGRSIPG 431 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+GK V AV +G+LVKGGGHAMAAG+T+ + + + V Sbjct: 432 VDLGKAVRQAVIDGVLVKGGGHAMAAGVTLRKDKLAEFRGYIEAALSTDVARARHANELF 491 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 IDG ++A V ML AGP+G+GNP PV A P+H+L V AHL++ F+S D Sbjct: 492 IDGAVSARGVTPDFAAMLNRAGPFGSGNPEPVIALPSHQLVYADEVGQAHLRLRFKSGDG 551 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + IAFR G LG L ++RG+ +HV G L ++ W+GS+R QLRV D + Sbjct: 552 AIVNGIAFRAIGQKLGNALAENRGQLLHVAGSLAIDRWQGSERVQLRVTDVAV 604 >gi|83954144|ref|ZP_00962864.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp. NAS-14.1] gi|83841181|gb|EAP80351.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp. NAS-14.1] Length = 579 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 244/588 (41%), Positives = 347/588 (59%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGV+ S++G RWV G E + Q+ ++P + +VL R V+ + A+ FL PS Sbjct: 2 SFLGVDASLTGRRWVG-PGVEVERATEVLVQQTSLPLALCQVLARRGVAAEEAEAFLAPS 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D +KAA R + A+ ++I +F DYDVDG +S AL++ +L A Sbjct: 61 LRDLLPDPRSLRDMEKAATRFLAAVKARQRIAVFADYDVDGGSSAALLLVWLREMGCAAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN + M + LI+ VDCG+ S+ + A + +++DHH Sbjct: 121 LYVPDRIDEGYGPNDAAM-AELAAAHDLIVCVDCGTLSHGPVAAAVGADV--VILDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A+VNPNR D+ HLCAA VVFL+LV R LR+ DL++LLDL Sbjct: 178 GETLPDALAVVNPNRQDEDGALAHLCAAAVVFLMLVEAGRQLREAG--ARGPDLMALLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 V LATV DV PLIG+NRA+V +GL V R+ GL AL + + + A +LG+++GP Sbjct: 236 VGLATVADVAPLIGVNRAFVRQGLRVMARRDRLGLAALADVARMDTAPAAYHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG+++LG+RLL DD E + LA KLD+LN RR +E+A+ A + + D Sbjct: 296 INAGGRIGQADLGARLLACDDPHEAQSLAEKLDLLNTERRDVETAVRAAALDQAEARGFD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G WHPG+VG++A+RLKE RPS I F EDG G GSGRS+ G D+G Sbjct: 356 ---APLVWASGAGWHPGVVGIVASRLKEASNRPSIVIGF-EDGIGKGSGRSVSGIDLGAP 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV + L K+DG+L Sbjct: 412 IQRLAAEGLLIKGGGHKMAAGLTVAEDKLDAAMARLSELLAKQGAHLAGAADLKLDGMLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 +A + L +E AGP+GAG P P +AF + +++ + V +HL+++F ++ + AI Sbjct: 472 PAAATVELAQQVEQAGPFGAGAPAPRYAFADMQIRFAKRVGESHLKISFGDGNNTKMDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF + PLG L G R H+ G L +N WRG + QLR+ DA+P Sbjct: 532 AFGAFDGPLGPALENHGGARFHLAGRLDINTWRGRQSVQLRLEDAAPA 579 >gi|83942968|ref|ZP_00955428.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp. EE-36] gi|83845976|gb|EAP83853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfitobacter sp. EE-36] Length = 579 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 243/588 (41%), Positives = 346/588 (58%), Gaps = 10/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGV+ S++G RWV G E + Q+ ++P + +VL R V+ + A+ FL PS Sbjct: 2 SFLGVDASLTGRRWVG-PGVEVERATEVLVQQTSLPLALCQVLARRGVAAEEAEAFLAPS 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D +KAA R + A+ ++I +F DYDVDG +S AL++ +L A Sbjct: 61 LRDLLPDPRSLRDMEKAATRFLAAVKARQRIAVFADYDVDGGSSAALLLVWLREMGCAAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +Y+PDRI +GYGPN + M + LI+ VDCG+ S+ + A + +++DHH Sbjct: 121 LYVPDRIDEGYGPNDAAMAELAA-SHDLIVCVDCGTLSHGPVAAAVGADV--VILDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A+VNPNR D+ HLCAA VVFL+LV R LR+ DL++LLDL Sbjct: 178 GETLPDALAVVNPNRQDEDGALAHLCAAAVVFLMLVEAGRQLREAG--ARGPDLMALLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 V LATV DV PLIG+NRA+V +GL V R+ GL AL + + + A +LG+++GP Sbjct: 236 VGLATVADVAPLIGVNRAFVRQGLRVMARRDRLGLAALADVARMDTAPAAYHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG+++LG+RLL DD E + LA KLD+LN RR +E+A+ A + + D Sbjct: 296 INAGGRIGQADLGARLLACDDPHEAQSLAEKLDLLNTERRDVETAVRAAALDQAEARGFD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G WHPG+VG++A+RLKE RPS I F EDG G GSGRS+ G D+G Sbjct: 356 ---APLVWASGAGWHPGVVGIVASRLKEASNRPSIVIGF-EDGIGKGSGRSVSGIDLGAP 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV + L K+DG+L Sbjct: 412 IQRLAAEGLLIKGGGHKMAAGLTVAEDKLDAAMARLSELLAKQGAHLAGAADLKLDGMLM 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 + + L +E AGP+GAG P P +AF + +++ + V +HL+++F ++ + AI Sbjct: 472 PATATVELAQQVEQAGPFGAGAPAPRYAFADMQIRFAKRVGESHLKISFGDGNNTKMDAI 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF + PLG L G R H+ G L +N WRG + QLR+ DA+P Sbjct: 532 AFGAFDGPLGPALENHGGARFHLAGRLDINTWRGRQSVQLRLEDAAPA 579 >gi|311069247|ref|YP_003974170.1| putative single-strand DNA-specific exonuclease [Bacillus atrophaeus 1942] gi|310869764|gb|ADP33239.1| putative single-strand DNA-specific exonuclease [Bacillus atrophaeus 1942] Length = 786 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 186/593 (31%), Positives = 283/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + ++T++ I +VA +LV R + A+ FLN D Sbjct: 3 ASKMRWEIQRPDQD--KVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +A RI +AI E IMI+GDYD DG S ++M++ L S + + YIPDR Sbjct: 60 PFEMKGMKEAVERIKEAISQQEPIMIYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN +G LIITVD G + + A G+DVI+ DHH+ Sbjct: 120 KEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKELGLDVIITDHHEPGPVLPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+V+P + L GV F + + L +D LLDL A+ T+ Sbjct: 180 CAIVHPKQPGCAYPFKELAGVGVAFKLAHALLGALPED-----------LLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR G+ R PGLKALI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLLATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+++D E + LA ++D LN+ R+ + S M ++A V Q S Sbjct: 289 IEQADPAVHLLMTEDEFEADELATEIDQLNKERQKIVSKMTDEAIEMVEQQGL---NGSA 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L ++F RP+ + +E+ G GS RSI+GFD+ S + Sbjct: 346 IVVAKSGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDL--FKSLSS 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L D + A + PV +ID V + + Sbjct: 404 CTDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G NP P N L+ +R + H++MT + Q S L + F Sbjct: 464 VESISEINLLSPFGMQNPKPHVMVENALLEDVRRIGANKNHIKMTVKDQ-SAKLDCVGFH 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G R+ + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELETG----IVPGSRISLVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571 >gi|296445858|ref|ZP_06887810.1| single-stranded-DNA-specific exonuclease RecJ [Methylosinus trichosporium OB3b] gi|296256686|gb|EFH03761.1| single-stranded-DNA-specific exonuclease RecJ [Methylosinus trichosporium OB3b] Length = 607 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 259/595 (43%), Positives = 358/595 (60%), Gaps = 6/595 (1%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 FLGVE S+SG W L RA+AI+Q + D++ARVL R V+ + A FL+PS+ Sbjct: 14 FLGVERSLSGRVWRPRLAAAEEGRAIAISQVLGLGDLLARVLAGRGVTQESAPAFLDPSL 73 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 R LMPDPL+L D D A R+ +A+ E++ +FGDYDVDGAAS AL++ FL Sbjct: 74 RALMPDPLLLQDMDAAVDRLARAVETGEQVAVFGDYDVDGAASSALLVEFLQAAGCPPPF 133 Query: 126 -YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +IPDRI++GYGPN + + GA L++T+DCG+TS++AL +A G+D IVIDHHQ Sbjct: 134 LHIPDRILEGYGPNVEAISELRRRGASLLVTLDCGTTSHEALAHARALGLDAIVIDHHQA 193 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSL 241 +P +VNPNR DDLSG GHLCAAGV F+ LV + R LR + +LL+ Sbjct: 194 PER-LPEAIVVNPNRADDLSGLGHLCAAGVAFMTLVALSRELRVRDFWTGVRPEPELLAA 252 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVALATV DV L GLNRA+V KGL V + + GL AL++ + P +LG+ + Sbjct: 253 LDLVALATVADVAALHGLNRAFVTKGLAVMKGRRRVGLAALLDAARVDGPPRPMHLGFAL 312 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LG+RLL D E +A +LD LN R+ +E A LE+AEA+ Q Sbjct: 313 GPRINAGGRIGDAALGARLLTLRDPIEAARIAAELDRLNGERQALERATLEEAEAEADRQ 372 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + S +VV G WHPGIVG++A+RLK+KF P+F I + GSGR+ G D+ Sbjct: 373 LMRSNRLSCLVVAGADWHPGIVGIVASRLKDKFKIPAFVIGQKGQS-CSGSGRASTGVDL 431 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G+ V AVE G++ KGGGH AAG+T+ F V + +DG Sbjct: 432 GRAVRRAVEAGVIEKGGGHRAAAGVTLAPPRIDAFRVFMNDALEEEVERARASDALLVDG 491 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L A + L+ LE AGP+G+GNP P+F FP+H++ VV H+++ +S D L Sbjct: 492 ALTARGADADLVRALERAGPFGSGNPEPLFVFPDHRIVDAGVVGSDHVRVRLQSGDGARL 551 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 A+AFR G +GE L++ RG +HV + +RG +R + R++D + + Sbjct: 552 DAVAFRAVGNEIGEALLRGRGDLLHVAARIGTRVYRGVERMETRIVDLARADRRL 606 >gi|148255389|ref|YP_001239974.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1] gi|146407562|gb|ABQ36068.1| exonuclease RecJ [Bradyrhizobium sp. BTAi1] Length = 613 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 279/592 (47%), Positives = 370/592 (62%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 QAFLGV S++ W L G RALA+ Q++ +P+++ARVL R+V ID DFL+ Sbjct: 13 PQAFLGVRLSLTNKLWRDRLDARGAARALAMVQRYQLPEMLARVLAGRDVDIDAVNDFLD 72 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP +T + AA+RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 73 PTIRKLMPDPFTVTQMEAAAKRIADAAVRGEKVAIFGDYDVDGATSAALLAWHLRHCGLD 132 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN + +GA L++TVDCG+TS + L A G+ V+VIDHH Sbjct: 133 PLIHIPDRIFEGYGPNVEAIRALAGKGATLLVTVDCGTTSLEPLAEARRLGMSVVVIDHH 192 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239 Q E ALVNPNR DDLSG G+L A G+ + LV + R LR DLL Sbjct: 193 QCGEELPEVEALVNPNRPDDLSGLGYLAAVGLTLVTLVAVNRELRGRGFWSGTRPEPDLL 252 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 S+L VAL TV DV PLI LNRA+V KGL+ RR+ + G AL++ ++ P A +LG+ Sbjct: 253 SMLHHVALGTVADVAPLIALNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGF 312 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 M+GP INAGGRIG ++LG RLL+ D E +A +LD LN RR++E QAEA+ L Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERRIIEQHAEAQAEAEAL 372 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + +VIV + WHPG+VGL+A+RLKEKF RP+FAI+ E G G GSGRSI G Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFARPAFAIALEPGGIGTGSGRSIPGV 432 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+GK V AVE+G+L+KGGGHAMAAG+T+ + + + V I Sbjct: 433 DLGKAVRHAVEQGLLIKGGGHAMAAGVTLRKERLAEFRAYLESALAADVAEARHVNEILI 492 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A A L+ L AGP+G+GNP P+ A P+H+L V AHL++ F+S D Sbjct: 493 DGAISARAATPELVATLNRAGPFGSGNPEPIVALPSHQLVYADEVGQAHLKLRFKSGDGA 552 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T+ AIAFR G LG L+Q RG+ +HV G L V+ ++G +R QLRVLD + Sbjct: 553 TVNAIAFRSVGQKLGNALVQHRGQVLHVAGTLTVDRYQGVERVQLRVLDVAV 604 >gi|56417161|ref|YP_154235.1| single-stranded-DNA-specific exonuclease [Anaplasma marginale str. St. Maries] gi|222475526|ref|YP_002563943.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma marginale str. Florida] gi|255003512|ref|ZP_05278476.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma marginale str. Puerto Rico] gi|255004634|ref|ZP_05279435.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma marginale str. Virginia] gi|56388393|gb|AAV86980.1| single-stranded-DNA-specific exonuclease [Anaplasma marginale str. St. Maries] gi|222419664|gb|ACM49687.1| single-stranded-DNA-specific exonuclease (recJ) [Anaplasma marginale str. Florida] Length = 586 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 231/580 (39%), Positives = 327/580 (56%), Gaps = 14/580 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 + G W + + I Q+ I ++VARVL R + I+ ++FL P++RLL+PDP Sbjct: 17 VGGATW--RVCEVPCRDVTTIMQRFGICEVVARVLATRGIPIEEMENFLFPTLRLLLPDP 74 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI AI N E I IFGDYDVDGA S A++ R+L V+ +YIPDR+ Sbjct: 75 FHLLDMDKAVARIHDAIRNGESIAIFGDYDVDGATSSAMLCRYLRGLEVHTKIYIPDRVE 134 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + M K EG L ITVDCG+ +Y+ + A + +DVIV+DHH + A Sbjct: 135 EGYGPNSAAMLKLREEGYSLCITVDCGTLAYEPILAARSVNLDVIVVDHHIGINTLPKAV 194 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250 A+VNPNRLD+ S +L A G FL+LV + + LR+ DL++ LDLVAL TV Sbjct: 195 AVVNPNRLDESSEHTYLSAVGTSFLLLVALQKTLREAGVFAHRSEPDLMNYLDLVALGTV 254 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P+I LNRA V GL V + N GL+ L + + I I+ +LG+ IGP INAGGR Sbjct: 255 CDVMPMIKLNRAMVRHGLKVISARSNVGLRVLGDAIGIEEKISVYHLGFSIGPHINAGGR 314 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G ++LG+ LL SDD E E ++ L LN R+ +E LE+A + Sbjct: 315 VGNASLGASLLSSDDESECERISYMLLSLNAERKELEKRSLEEALHQAERLVAAGNN--- 371 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +++ WH G++G++A+RLKE+F PS +S G S RS+ G DIG V A Sbjct: 372 VIMVAGTWHVGVIGIVASRLKERFHLPSIVVSLSG-NLGKASARSVSGIDIGAAVLAAKL 430 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E ++ +GGGHAMAAG +V L F V G+L A AVN Sbjct: 431 EQLIPEGGGHAMAAGFSVCADKLEALY----SFFLERFKHSDIQKVSYACGILTAGAVNF 486 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L L+ P+G GNP P F N +++ V+ +H++ S D+ ++ + F+ G Sbjct: 487 PLWRELQMLEPFGPGNPEPRFILKNVEIRKPEVMGGSHVRC-LISGDNALVKGVCFKCIG 545 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T LG L+Q RG+ +H+ G + VN WRG++ Q + DA+ Sbjct: 546 TELGTTLLQ-RGRCVHLLGKISVNQWRGNEYVQFVIDDAA 584 >gi|148559790|ref|YP_001259184.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ovis ATCC 25840] gi|148371047|gb|ABQ61026.1| single-stranded-DNA-specific exonuclease RecJ [Brucella ovis ATCC 25840] Length = 575 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 309/571 (54%), Positives = 387/571 (67%), Gaps = 2/571 (0%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 LG N ALAI Q H I D+VARVL R VS++ A +F++P++R LMPDP L D D Sbjct: 3 RLGPREANTALAIAQHHGISDLVARVLAGRGVSVEGAPEFVDPTLRNLMPDPATLNDMDN 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 AA RI AI E + IFGDYDVDGA S ALM RFL H V ++YIPDRI +GYGPNP Sbjct: 63 AAGRIADAIQRRETVAIFGDYDVDGACSSALMARFLKHYGVQHSIYIPDRIFEGYGPNPD 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-KSEEIPAYALVNPNR 199 M + +GA LI+TVDCG+ S ++ A G DV+V+DHHQV A A+VNPNR Sbjct: 123 AMRELAAKGASLIVTVDCGTNSVPSITAAKQAGADVVVLDHHQVGGDLPEDAVAIVNPNR 182 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 DD+S QGHLCAAGVVFL LV + +ILR K P DLLS+LDLVALATVCDVVPL G+ Sbjct: 183 EDDISQQGHLCAAGVVFLALVQVAKILRARGKGP-GPDLLSMLDLVALATVCDVVPLKGV 241 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 NRA+VVKGL+VAR Q N GL AL I P+ A +LGY+IGP INAGGRIG++ LG+R Sbjct: 242 NRAFVVKGLLVARGQSNVGLAALARVARIGEPLNAFHLGYLIGPRINAGGRIGDAGLGAR 301 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL DD + +AM+LD LNQ R+ ME+ ML +AEA+ + ASVIV DRWH Sbjct: 302 LLTLDDPAMADRIAMELDRLNQERQAMEAEMLMEAEAEASLEISGGAGASVIVTASDRWH 361 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 PGIVGLLA+RLKEK RP+FAI+F +G G GSGRSI G D+GK+V AVE+G+LVKGGG Sbjct: 362 PGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSISGLDLGKLVRGAVEKGLLVKGGG 421 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAG+T+ER N G L + ++ A +IV L IDG L AS +AL + L+ A Sbjct: 422 HAMAAGITIERGNLGALRAYLEEEAADIVSRLRENQSLSIDGALAASGATVALYEALQKA 481 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 GPYG+ +P P+ A P+H L +R V H+++T D + + AIAFR LG FL Sbjct: 482 GPYGSAHPQPLLALPHHVLADVRGVGRDHVRVTLRGADGKRVNAIAFRAAEGDLGRFLFN 541 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G +HV G+L +N+W GS Q+++LDA+ Sbjct: 542 NIGCSVHVAGNLSLNHWNGSVSPQIQILDAA 572 >gi|298207151|ref|YP_003715330.1| single-stranded-DNA-specific exonuclease recJ [Croceibacter atlanticus HTCC2559] gi|83849786|gb|EAP87654.1| single-stranded-DNA-specific exonuclease recJ [Croceibacter atlanticus HTCC2559] Length = 568 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 171/582 (29%), Positives = 276/582 (47%), Gaps = 26/582 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW + + A++ ++P+ +A +LV R ++ D AK F PS+ L +P +L Sbjct: 2 RWTLKP-KPDYTKVTALSAALSVPENIAALLVQRGITNYDEAKSFFRPSLSELH-NPFLL 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI +AI SE I+++GDYDVDG SVALM FL + N YIPDR +GY Sbjct: 60 KDMDVAVTRIEKAIKESENILVYGDYDVDGTTSVALMSSFLKTKTPNVATYIPDRYDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YA +G+D I+ DHH+ + A A++ Sbjct: 120 GVSYKGIDFAADNDITLIIALDCGIKAIDKVAYAKEKGVDFIICDHHRPGKQIPDAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ I DLL LDLVA A D+VP Sbjct: 180 DPKRDDCNYPYKELCGCGVGFKLIQAINEQSG-----GTINDLLGYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL + G A+I++V +T ++ ++I P INA GR+ N Sbjct: 235 MTGENRILAYHGLHIINTAPRMGFYAIIKQVK-KETLTITDVVFIIAPRINAAGRMKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL D A +++ N++RR + ++ E+A ++ + VV Sbjct: 294 HAVTLLTETDINLAAKYAQEIETFNKDRREADKSITEEALLQINDNS--EKDCKTTVVYH 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + + K S RS++GFD+ + + Sbjct: 352 ESWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYNALEAC--SKHIE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ ++ F+K + + TP ID L+ + + + Sbjct: 409 QFGGHKYAAGLTLLEKDYENFKAEFEKVVSETIDERLLTPEINIDSELDLADITPKFFRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLA--HLQMTFESQ-----DSETLQAIAFR 547 L+ P+G GN +P F N + + V HL++ + D + AI F Sbjct: 469 LKQFAPFGPGNMHPTFMTKNVRDTGYGKCVGQDNAHLKLAVQPNNVPKSDKRGIGAIGFN 528 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + K + + N W G+ QL++ D Sbjct: 529 LGN----KCELTTDRKTFDIVYSIDENEWNGNVSLQLKLKDL 566 >gi|218530939|ref|YP_002421755.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium chloromethanicum CM4] gi|218523242|gb|ACK83827.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium chloromethanicum CM4] Length = 611 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 263/592 (44%), Positives = 355/592 (59%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL V S G W G G+ A+ +TQ + +PD++ARVLV R V A +L Sbjct: 18 PRPFLDVTASALGRPWRERCGDPGLQALAVTMTQAYGLPDLLARVLVGRGVRPAEADAYL 77 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP +L D + A R+ A+ E + IFGDYDVDGA+S AL+ +L V Sbjct: 78 APRLRDLMPDPSVLVDMEAAVERLAHAVRAREAVAIFGDYDVDGASSAALLADYLRALGV 137 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++ VDCG+ ++ L A G+DVIV+DH Sbjct: 138 PVRIHIPDRITEGYGPNVGAVTTLREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 197 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLL 239 H E ALVNPNRLDDLSG GHLCAAGVVF+ LV + R LR+D L Sbjct: 198 HGAPEELPQTRALVNPNRLDDLSGLGHLCAAGVVFMTLVALARRLRRDRVFATSAEPRLT 257 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LDLVALATV DVVPL GLNRA+VV+GL V R +G PGL AL++ +S P A +LG+ Sbjct: 258 DFLDLVALATVADVVPLTGLNRAFVVQGLAVMRGRGRPGLAALLDAAGLSEPPEAWHLGF 317 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG++ LG+RLL + D E +A +LD LN+ R+ +E+ + +AEA++ Sbjct: 318 LVGPRINAGGRIGDAGLGARLLTTADPMEARRIADELDRLNRERQAIEAQAVAEAEAEMD 377 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 V++ WHPGIVGL+AARLKE+FGRP+FA + + DG +GSGRS+ G Sbjct: 378 AHLTRDPDRPVLIAASPEWHPGIVGLIAARLKERFGRPAFAFAVKPDGSAVGSGRSVVGA 437 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G V AVE G+ VKGGGHAMAAG+T+ + V I Sbjct: 438 DLGGAVRSAVEAGLAVKGGGHAMAAGVTLPPGGLAAFGESLTHDLVEAVGRARAAEALLI 497 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A L+ +++ AGP+G G P PV A P H++ +V H++ S D + Sbjct: 498 DGTVSAGGATAELVRLIQRAGPFGQGAPEPVMALPRHRVVDAGIVGNGHVRARLVSGDGQ 557 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + AIAFR PLG L+ G+ HV G L + WRG++R Q+R+ D +P Sbjct: 558 AVGAIAFRAAQGPLGVALLGGIGRSFHVAGTLSCDRWRGAERAQVRICDVAP 609 >gi|157827557|ref|YP_001496621.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii OSU 85-389] gi|157802861|gb|ABV79584.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii OSU 85-389] Length = 585 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 229/586 (39%), Positives = 335/586 (57%), Gaps = 13/586 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W E I + + + I D++AR++ R I A+DFL P I+ L+ Sbjct: 4 QASINGKIWQRRSVNEEI--VIELCRSFKISDLLARMISLRIDDIAKAEDFLMPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D KA R ++AI + +KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMQKAVDRAIKAILSKQKICIFADYDVDGATSSALLKNVFKDLNIVCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP PS M+K + G +L+ITVDCG+ +++AL+YA + G+DVIVIDHH Sbjct: 122 RIAEGYGPTPSAMQKIKDNGTELLITVDCGAMAHEALKYAKDAGLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVAL 247 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVAL Sbjct: 182 EAVAIVNPNRVDETSECKHLAAVGVAFLFATGILSDLKRQNYFEKTLPPNLMKYLDLVAL 241 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCD+V LIGLNRA+V GL + ++ N G+K L + ++ +LG+++GP INA Sbjct: 242 GTVCDMVKLIGLNRAFVSSGLKIMHQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPHINA 301 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGR+G+S+LG+ LL ++ S E LA +L+ N R+++E M+E+A TQ Q Sbjct: 302 GGRVGKSSLGANLLSTNCSNEALKLAEELEKHNNERKVIEMLMIEEAMEMAKTQ----QD 357 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 S++ + + WHPG++G++A RLKEKF +P I+ + G G S RSI G D G + Sbjct: 358 NSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIIN 416 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A + +L+ GGGHAMAAG TV L +F + L + D L+ S+ Sbjct: 417 AKVKNLLITGGGHAMAAGFTVAAEKIQELQEFLNNAFRISLNRLENYKQAEYDLDLSLSS 476 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF----ESQDSETLQA 543 V++ L++ L + P+G GN P+F F N + +V H++ F +S S+ LQA Sbjct: 477 VHLPLMEELSTLEPFGQGNYEPIFKFDNLFVLKADIVGSKHIRCLFAPNKKSSSSKALQA 536 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 IAF GT E L+ + + V G L N W+ + QL + D Sbjct: 537 IAFNSLGTSFEEVLLSPKAHNISVLGTLKTNNWQNNYTIQLIIKDV 582 >gi|91205110|ref|YP_537465.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii RML369-C] gi|91068654|gb|ABE04376.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia bellii RML369-C] Length = 585 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 229/586 (39%), Positives = 335/586 (57%), Gaps = 13/586 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W E I + + + I D++AR++ R I A+DFL P I+ L+ Sbjct: 4 QASINGKIWQRRSVNEEI--VIELCRSFKISDLLARMISLRIDDIAKAEDFLMPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D KA R ++AI + +KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMQKAVDRAIKAILSKQKICIFADYDVDGATSSALLKNVFKDLNIVCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP PS M+K + G +L+ITVDCG+ +++AL+YA + G+DVIVIDHH Sbjct: 122 RIAEGYGPTPSAMQKIKDNGTELLITVDCGAMAHEALKYAKDAGLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVAL 247 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVAL Sbjct: 182 EAVAIVNPNRVDETSECKHLAAVGVAFLFATGILSDLKRQNYFEKTLPPNLMKYLDLVAL 241 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCD+V LIGLNRA+V GL + ++ N G+K L + ++ +LG+++GP INA Sbjct: 242 GTVCDMVKLIGLNRAFVSSGLKIMHQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRINA 301 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGR+G+S+LG+ LL ++ S E LA +L+ N R+++E M+E+A TQ Q Sbjct: 302 GGRVGKSSLGANLLSTNCSNEALKLAEELEKHNNERKVIEMLMIEEAMEMAKTQ----QD 357 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 S++ + + WHPG++G++A RLKEKF +P I+ + G G S RSI G D G + Sbjct: 358 NSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIIN 416 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A + +L+ GGGHAMAAG TV L +F + L + D L+ S+ Sbjct: 417 AKVKNLLITGGGHAMAAGFTVAAEKIQELQEFLNNAFRISLNRLENYKQAEYDLDLSLSS 476 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF----ESQDSETLQA 543 V++ L++ L + P+G GN P+F F N + +V H++ F +S S+ LQA Sbjct: 477 VHLPLMEELSTLEPFGQGNYEPIFKFDNLFVLKADIVGSKHIRCLFAPNKKSSSSKALQA 536 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 IAF GT E L+ + + V G L N W+ + QL + D Sbjct: 537 IAFNSLGTSFEEVLLSPKAHNISVLGTLKTNNWQNNYTIQLIIKDV 582 >gi|291485171|dbj|BAI86246.1| hypothetical protein BSNT_04007 [Bacillus subtilis subsp. natto BEST195] Length = 786 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 189/593 (31%), Positives = 284/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +AA RI QAI EKIMI+GDYD DG S ++M+ L S + YIPDR Sbjct: 60 PFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN + G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 KEGYGPNEQAFRSIKDRGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + L GV F + + L LLDL A+ T+ Sbjct: 180 HAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR GL RR GLK LI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+S+DS E E LA ++D LN+ R+ M S M ++A V Q D Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L ++F RP+ + +E+ G GS RSI GF++ S + Sbjct: 346 IVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T++ + L + A N + PV ++D V + + Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCSIEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G NP P N L+ +R + H++MT ++ S+ L + F Sbjct: 464 VESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQ-LDCVGFN 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G R+ + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELQEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571 >gi|321312290|ref|YP_004204577.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus subtilis BSn5] gi|320018564|gb|ADV93550.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus subtilis BSn5] Length = 786 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 189/593 (31%), Positives = 284/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +AA RI QAI EKIMI+GDYD DG S ++M+ L S + YIPDR Sbjct: 60 PFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN + G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 KEGYGPNEQAFRSIKDRGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + L GV F + + L LLDL A+ T+ Sbjct: 180 HAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR GL RR GLK LI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+S+DS E E LA ++D LN+ R+ M S M ++A V Q D Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L ++F RP+ + +E+ G GS RSI GF++ S + Sbjct: 346 IVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T++ + L + A N + PV ++D V + + Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCSVEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G NP P N L+ +R + H++MT ++ S+ L + F Sbjct: 464 VESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQ-LDCVGFN 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G R+ + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELQEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571 >gi|190571037|ref|YP_001975395.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019558|ref|ZP_03335364.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357309|emb|CAQ54738.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994980|gb|EEB55622.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 579 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 232/587 (39%), Positives = 341/587 (58%), Gaps = 16/587 (2%) Query: 6 FLGVEC-SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 L +E SI+ W + + Q+ +P+I+AR+LV R V+I+ A DFL+P Sbjct: 2 LLDIEKRSITNALWKLQ--EADQREIFTLIQRFELPEILARILVARGVNIENAHDFLHPL 59 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR L+PDP L D DKA I++AI N+E I IFGDYDVDGA S AL+ R+L ++ Sbjct: 60 IRSLLPDPFHLLDMDKAVSHIIKAINNNENIAIFGDYDVDGATSSALINRYLRAIGTHSI 119 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDR+ +GYG N + + G L I+VDCG+ +Y ++ A G+D+IV+DHH Sbjct: 120 IYIPDRVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKVFGLDIIVVDHHLG 179 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242 + A A+VNPNRLD+ S +L A GV FL++V + RILR+ DL LL Sbjct: 180 TEKLPSAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNRILREQGFFTNKKEPDLFDLL 239 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVAL TVCDV+ + GLNRA+V++GL V + N GL+ L + + I + LG+ IG Sbjct: 240 DLVALGTVCDVMQITGLNRAFVLQGLKVMSARKNVGLRVLFDALGILEKPSVSRLGFSIG 299 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIGE++LG+RLL +DD + +A+KL LN R+++E+ + +A + Sbjct: 300 PCINAGGRIGEASLGARLLSTDDDDDAHSIALKLIDLNNARKMLENEAILEATTQAENFA 359 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ WH GI+G++A+RLKE+F P+ IS +G G S RSI G DIG Sbjct: 360 HLGVN---FIMVSGNWHQGIIGIIASRLKEQFHLPTIVIS-LNNGIGKASCRSISGVDIG 415 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 V A ++++GGGH+MAAG +++ L DFF + N + K DG+ Sbjct: 416 AAVLSAKFTNLIIEGGGHSMAAGFSIKEDKISDLHDFFTERFANSTND----KIIKADGI 471 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + A A+N++L + L+ P+GAGNP P F K++ V+ + H++ D+ ++ Sbjct: 472 VTAKAINLSLWNQLQRLEPFGAGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVK 530 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAFR T LG +MQ K + G + +NYW G++ Q + D Sbjct: 531 AIAFRCANTELGSAIMQGNVKA--ILGKISMNYWNGNEFVQFLIEDV 575 >gi|294678579|ref|YP_003579194.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter capsulatus SB 1003] gi|294477399|gb|ADE86787.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter capsulatus SB 1003] Length = 577 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 245/587 (41%), Positives = 339/587 (57%), Gaps = 15/587 (2%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FL V+ S++G RWV + A A+ Q +P +ARVLV R V+ + A FL P+ Sbjct: 3 SFLNVDTSLTGRRWVGPSLEAD-RLAEAMAQATHLPLPLARVLVARGVTPEAAAGFLEPT 61 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D +KAA R ++A+ + EKI IF DYDVDG +S AL++ FL V Sbjct: 62 LRDLLPDPHRLKDMEKAAARFLRALRSREKIAIFADYDVDGGSSAALLICFLRAFGVTPT 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M+ + LI+ VDCG+ S+ + A + +++DHH Sbjct: 122 LYIPDRIDEGYGPNVPAMQA-LGREHGLIVCVDCGTLSHAPVAAAAPADV--VILDHHLG 178 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 PA A VNPNR D+ GHLCAA VVFL+LV R LR + DL+++LDL Sbjct: 179 GETLPPAVACVNPNRQDEPGDLGHLCAASVVFLMLVEANRQLRAEGV--KGPDLMAMLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G+NRA V +GL V R+ PGL AL + + TA +LG+++GP Sbjct: 237 VALATVADVAPLLGVNRALVRQGLKVMARRERPGLVALSDVARLDKAPTAYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG ++LG+RLL +D + E LA +LD LN RR +E+ + + A + + D Sbjct: 297 VNAGGRIGAADLGARLLSTDSAAEAAALAERLDRLNSERREIENRVRDAALTQAEARGLD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ G+ WHPG+VG++AARLKE RP+ I E G G GS RS+ G D+G Sbjct: 357 G---PLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIG-LEGGLGKGSARSVAGVDLGAA 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC-DFFQKFAHNIVPALITTPVFKIDGVL 483 V EG+L+KGGGH MAAGLT+ R R ++DG+L Sbjct: 413 VQRVAAEGLLLKGGGHRMAAGLTLPRAVEPRWKAAECSPGRARHGGPADL----RLDGLL 468 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A ALI+ L+ AGPYG P+P FAFP + + R + +HL+++F L A Sbjct: 469 MPGAATPALIEDLDRAGPYGQAAPSPRFAFPAMAILNARRIGESHLRLSFGDGLGAKLDA 528 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAF + PLG L R H+ G L ++ W G + QLR+ DA+ Sbjct: 529 IAFGAFDGPLGPALSAGGAGRFHLAGKLELDSWGGRSKVQLRLDDAA 575 >gi|296532974|ref|ZP_06895629.1| single-stranded-DNA-specific exonuclease RecJ [Roseomonas cervicalis ATCC 49957] gi|296266697|gb|EFH12667.1| single-stranded-DNA-specific exonuclease RecJ [Roseomonas cervicalis ATCC 49957] Length = 599 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 243/599 (40%), Positives = 335/599 (55%), Gaps = 14/599 (2%) Query: 1 MND---QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA 57 M D +A LGV S+ G RWV Q +AI Q+ +P+++ ++L R V+ + A Sbjct: 8 MTDPAGEAVLGVTRSVLGRRWVWR--QADTRIGMAIAQRLDLPELLGQLLAARGVTPEQA 65 Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 FL P++R L+PDP +L D D+AA R+ QA+ E + +FGDYDVDGA++ ALM+RFL Sbjct: 66 ALFLEPTLRALLPDPSVLVDMDRAAERLAQAVRAREPVAVFGDYDVDGASAGALMLRFLR 125 Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 Y+PDR+ +GYGPNP + + GA L++ VDCG ++ AL+ A + DV+ Sbjct: 126 DLGCPVRHYVPDRLKEGYGPNPGAIAALCDGGATLLVCVDCGIAAHAALEAARGR-ADVV 184 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLN 235 V+DHH+ + A VNPNRLD SG HLCAA V F+ V R LR+ Sbjct: 185 VLDHHKAEGPVPVVAAAVNPNRLDCGSGLKHLCAAAVSFMAAVATLRALRRSGFFEGREP 244 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 DL LLDLVALATVCDV+PL GLNRA+V +GL V R PG+ AL+E +A Sbjct: 245 PDLRDLLDLVALATVCDVMPLTGLNRAFVTQGLKVMARGERPGIAALLEVAQAREAPSAY 304 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 LG+++GP INA GRIGE +LG RLL DD E ++A +LD +N+ R+ +ES +L A Sbjct: 305 TLGFLLGPRINASGRIGEPDLGLRLLACDDPVEARIMAERLDAVNRRRQEVESEVLAAAF 364 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 A+ Q V+++ G+ WHPG+VG++A R+KEKF RP+ + DG GSGRS Sbjct: 365 AQAEAQAGAGH--PVLLICGEGWHPGVVGIVAGRVKEKFNRPTCV-AGISDGLAKGSGRS 421 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + G D+G V A + G+L GGGHAMAAG + F + L + Sbjct: 422 VPGIDLGAAVIAARQSGLLETGGGHAMAAGFSFRLERQEEFHAFLNERLS-HAADLPGSA 480 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTF 533 +DG L A L + GP+GAGN PVF FP ++ V ++ Sbjct: 481 DLVVDGTLRVPAATAELATQVARLGPFGAGNEEPVFIFPRVRVVRADRVGKEGNTVRAFL 540 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 E + L+AI FR PL E L+ SRG +H+ G L +W G+ L V D +P Sbjct: 541 EGEGGGRLKAICFRAKEGPLAELLLNSRGVPVHLAGALRAEHWNGNVSAGLHVQDGAPA 599 >gi|296331693|ref|ZP_06874162.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675348|ref|YP_003867020.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis subsp. spizizenii str. W23] gi|296151288|gb|EFG92168.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413592|gb|ADM38711.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis subsp. spizizenii str. W23] Length = 786 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 187/593 (31%), Positives = 281/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +A RI QAI E+IMI+GDYD DG S ++M+ L S + YIPDR Sbjct: 60 PFEMKGMKEAVDRIKQAISQQEQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 KEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPNV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + L GV F + + L LLDL A+ T+ Sbjct: 180 HAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR GL RR GLK L++ E +G+ I P +NA GR Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELVKLSGGDIGEANEETVGFQIAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+S+DS E E LA ++D LN+ R+ M S M ++A V Q D Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L ++F RP+ + +E+ G GS RSI GF++ S + Sbjct: 346 IVVAKSGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L + + A N + PV ++D V + Sbjct: 404 CRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIADNTLTEEDFIPVQEVDLVCGVEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G NP P N L+ +R + H++MT ++ S+ L + F Sbjct: 464 VESITEMNLLSPFGMLNPKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQ-LDCVGFN 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G R+ + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELEEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571 >gi|86144179|ref|ZP_01062516.1| single-stranded-DNA-specific exonuclease RecJ [Leeuwenhoekiella blandensis MED217] gi|85829441|gb|EAQ47906.1| single-stranded-DNA-specific exonuclease RecJ [Leeuwenhoekiella blandensis MED217] Length = 563 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 175/578 (30%), Positives = 275/578 (47%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW E + A ++ AIP+ +A++L+ R V D AK F PS+ L DP ++ Sbjct: 2 RWTLKPIPE-TEKINAFAKQLAIPEKIAQLLIQRGVDTYDKAKAFFRPSLEDLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI AI +E I+++GDYDVDG SVALM +L YIPDR +GY Sbjct: 60 KDMDKAVARINSAIAQNENILVYGDYDVDGTTSVALMSSYLKTLHPQVATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + + ++ + LI+ +DCG + + + YA GID I+ DHH+ +E A A++ Sbjct: 120 GVSYTGIDYAHDNDITLIVALDCGVKAIEKVAYAKKLGIDFIICDHHRPGAEIPEAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + + L+ LDLVA A D+VP Sbjct: 180 DPKREDCDYPYKELCGCGVGFKLIQAMEQEKGL-----PVKTLVPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G++ALIE VN +T ++ ++I P INA GRI Sbjct: 235 ITGENRVLAFYGLDVINTLPRTGIQALIENVNKDE-LTITDVVFIIAPRINAAGRIKHGL 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL D + + +A ++ N R+ ++ + ++A ++ + + + VV Sbjct: 294 HAVELLTEQDYERAQEMASGIEGFNAERKDLDKVITQEALLQI--ETNKEENRKTTVVFQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + + K S RS++GFD+ + E + Sbjct: 352 ENWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYDALEQCSEH--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + F++ + + + P ID L + + Sbjct: 409 QFGGHKYAAGLTLGEHQYEGFKQKFEEVVSSSIDERLLIPEITIDAELELDDITPKFYRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L PYG GN PVF N + V HL+ + S+T+ AI F + Sbjct: 469 LRQFAPYGPGNMTPVFMSKNLTDTGYGKCVGADETHLKCSVTQNGSQTIGAIGFGLG--- 525 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + K L +N W G+K QL++ D Sbjct: 526 -SKCDLIQHKKPFKAAYSLDINEWNGTKSIQLKLRDIQ 562 >gi|170749204|ref|YP_001755464.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium radiotolerans JCM 2831] gi|170655726|gb|ACB24781.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium radiotolerans JCM 2831] Length = 605 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 264/594 (44%), Positives = 358/594 (60%), Gaps = 4/594 (0%) Query: 5 AFLGVECSISGFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 FLGV S++G RW G N+ + Q H +P+++ARVL R + + A L P Sbjct: 12 PFLGVAASVTGRRWQERCGGAAVQNQIAKMVQAHGLPELLARVLAGRGIVPEAAPRHLAP 71 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +R LMPDP L D + A RR+V+A+ E + +FGDYDVDGAAS AL+ +L + + A Sbjct: 72 RLRDLMPDPDTLLDMEAAVRRLVRAVKRGETVAVFGDYDVDGAASAALLAGYLRNLGLRA 131 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++IPDRI +GYGPN + + EGA L++ VDCG++ + L+ A G+DVIV+DHH Sbjct: 132 PIHIPDRITEGYGPNVAAITALAAEGATLLVCVDCGTSGHAPLEEAEKFGLDVIVLDHHA 191 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLS 240 PA A+VNPNRLDDLSG GHLCAAG+VFL LV + R LRQ+ + L Sbjct: 192 ASEILPPARAVVNPNRLDDLSGLGHLCAAGIVFLTLVALNRALRQEGFFGSHRPEPQLTD 251 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LDLVALATV DVVPL GLNRA+V +GL V R +G GL AL++ ++ P A +LG++ Sbjct: 252 ALDLVALATVADVVPLTGLNRAFVTQGLTVMRHRGRTGLAALLDAASLGEPPEAWHLGFV 311 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRIG+S LG+RLL + D E +A LD LN+ R+ +E+ + +AEA++ Sbjct: 312 LGPRINAGGRIGDSALGARLLTTADPGEAARIAADLDRLNRERQAIEAQAVLEAEAEMDR 371 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 +V+V WHPGIVGL+A+RLKE+F RP+FA + DG GSGRSI G D Sbjct: 372 ALTLDPDRTVLVTASADWHPGIVGLIASRLKERFNRPAFAFAIRPDGTATGSGRSIPGAD 431 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G V VE + KGGGHAMAAG+TV + R V ID Sbjct: 432 LGLAVRACVEARLASKGGGHAMAAGVTVRADDIPRFEAHLAMLLGASVAVARAADALLID 491 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G L+A + +L+ AGP+G G P P+FA H+L VV +H++ S+D + Sbjct: 492 GGLSAGGATAETVRLLQRAGPFGQGAPEPIFALGRHRLVDAGVVGSSHVRARLRSRDGQV 551 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + AI FR PLG L+ G+ MHV G L + WRG++R QLR++D +P E Sbjct: 552 VGAICFRAAERPLGLALLNGIGREMHVAGTLSCDRWRGAERAQLRIVDLAPSES 605 >gi|269958438|ref|YP_003328225.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma centrale str. Israel] gi|269848267|gb|ACZ48911.1| single-stranded-DNA-specific exonuclease RecJ [Anaplasma centrale str. Israel] Length = 586 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 231/580 (39%), Positives = 327/580 (56%), Gaps = 14/580 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 + G W + + I Q+ I ++VARVL R + I+ ++FL P++RLL+PDP Sbjct: 17 VGGATW--RVSEVPCRDVTTIMQRFGICEVVARVLATRGIPIEEMENFLFPTLRLLLPDP 74 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI AI N E I IFGDYDVDGA S A++ R+L V+ +YIPDR+ Sbjct: 75 FHLLDMDKAVARIHDAIRNGESIAIFGDYDVDGATSSAMLCRYLRGLEVHTKIYIPDRVE 134 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + M K EG L ITVDCG+ +Y+ + A + +DVIV+DHH + A Sbjct: 135 EGYGPNSAAMLKLREEGYSLCITVDCGTLAYEPILAARSVNLDVIVVDHHIGINTLPKAV 194 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250 A+VNPNRLD+ S +L A G FL+LV + + LR+ DL++ LDLVAL TV Sbjct: 195 AVVNPNRLDESSEHTYLSAVGTSFLLLVALQKTLREAGVFAHRSEPDLMNYLDLVALGTV 254 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P+I LNRA V GL V + N GL+ L + + I I+ +LG+ IGP INAGGR Sbjct: 255 CDVMPMIKLNRAMVRHGLKVISARSNVGLRVLGDAIGIEEKISVYHLGFSIGPHINAGGR 314 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G ++LG+ LL SDD E E ++ L LN R+ +E LE+A + Sbjct: 315 VGNASLGASLLSSDDESECERISYMLLSLNAERKELEKRSLEEALHQAERLVAAGNN--- 371 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +++ WH G++G++A+RLKE+F PS +S G S RS+ G DIG V A Sbjct: 372 VIMVAGTWHVGVIGIVASRLKERFHLPSIVVSLSG-NLGKASARSVSGIDIGAAVLAAKL 430 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E ++ +GGGHAMAAG +V L F V G+L A AVN Sbjct: 431 EQLIPEGGGHAMAAGFSVCADKLEALY----SFFLERFKHSDIQKVSYACGILTAGAVNF 486 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L L+ P+G GNP P F N +++ V+ +H++ S D+ ++ + F+ G Sbjct: 487 PLWRELQMLEPFGPGNPEPRFILKNVEIRKPEVMGGSHVRC-LISGDNALVKGVCFKCIG 545 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T LG L+Q RG+ +H+ G + VN WRG++ Q + DA+ Sbjct: 546 TELGTTLLQ-RGRCVHLLGKISVNQWRGNEYVQFVMDDAA 584 >gi|58617623|ref|YP_196822.1| single-stranded-DNA-specific exonuclease recJ [Ehrlichia ruminantium str. Gardel] gi|58417235|emb|CAI28348.1| Single-stranded-DNA-specific exonuclease recJ [Ehrlichia ruminantium str. Gardel] Length = 590 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 224/591 (37%), Positives = 341/591 (57%), Gaps = 20/591 (3%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 + + ++GV +G W + L I QK + +IVAR+L R ++I+ +F Sbjct: 11 LENSGYIGV----TGALW--KPYDVNLRDILTIKQKFYLSEIVARILSARKINIEEISNF 64 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L P+++ +P+P + D DKA RI AI+N E I+IFGDYDVDGA S AL+ ++LS Sbjct: 65 LYPTLKSSLPNPFHMLDMDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIG 124 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 V +YIPDRI +GYGPN + K G L ITVDCG+ +++ + A + +DVIVID Sbjct: 125 VPTTIYIPDRICEGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVID 184 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDL 238 HH + A A++NPNRLD+ S +L GV FL+LV +++ L++ N +L Sbjct: 185 HHIGINTLPDAVAVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFFKNNQEPNL 244 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 ++ LDLVAL TVCDV+P+IGLNR +V +GL + + N GLK L + + + LG Sbjct: 245 INYLDLVALGTVCDVMPIIGLNRTFVKQGLKIMTTRQNLGLKTLSDVIGLEEKPNIYQLG 304 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + IGP INAGGR+G ++LG+RLL +++ +E ++ KL N R+ +E+ +A ++ Sbjct: 305 FNIGPHINAGGRVGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQI 364 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 I++ WHPGI+G++A RLK+KF PS IS E+G G S RSI Sbjct: 365 EATIISSN----IIIATGNWHPGIIGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPD 419 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 D+G + A GI+++GGGHAMAAG +++ L +F + HNI VFK Sbjct: 420 VDLGAAILEAKALGIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINT----RKVFK 475 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 +DG++ A A+N+ L L+ P+G GNP P F N ++++ V+ +H++ + Sbjct: 476 VDGIVTAEAINLKLWKELQFLEPFGIGNPEPRFILTNIRIKNPEVIGESHIRC-LIYDNK 534 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ I FR GT LG L++ + G + +NYWRG++ Q + DA Sbjct: 535 TFIKGICFRCIGTELGTTLLECTTTTLL--GKISINYWRGNENIQFIIEDA 583 >gi|15604385|ref|NP_220901.1| single-stranded-DNA-specific exonuclease RECJ (recJ) [Rickettsia prowazekii str. Madrid E] gi|3861077|emb|CAA14977.1| SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) [Rickettsia prowazekii] gi|292572140|gb|ADE30055.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia prowazekii Rp22] Length = 586 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 220/585 (37%), Positives = 330/585 (56%), Gaps = 14/585 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 SI+G W +E I + + I D +AR++ R +++ ++FL P I+ L+PD Sbjct: 6 SINGKIWKQKPIKEDI--VTELCRSFKISDFLARIVSLRVNNLEEVENFLIPKIKNLLPD 63 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L D DKA RI+QAI NS++I IF DYDVDGA S AL+ FL ++ ++Y+PDRI Sbjct: 64 PFHLLDMDKAVDRIIQAIVNSQQICIFADYDVDGATSAALLKHFLRDLNIICDIYVPDRI 123 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGP P M+K G +L+ITVDCG+ ++DAL+YA + +DVIVIDHH A Sbjct: 124 YEGYGPTPLAMQKIKGNGTELLITVDCGAMAHDALKYAKDVKLDVIVIDHHISTEILPDA 183 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALA 248 A+VNPNR+D+ S +L A GV FL I L++ N +L+ LDLVAL Sbjct: 184 VAIVNPNRIDETSEYKYLAAVGVTFLFATAILSNLKKRNYFSQSIPTPNLMKYLDLVALG 243 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 TVCD++ L GLNRA+V GL V +++ N G+K L + + +LG+++GP INAG Sbjct: 244 TVCDMMKLTGLNRAFVTAGLKVMQQRQNIGIKTLYDIAGLDEIPQCYHLGFILGPRINAG 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+G+SNLG+ LL ++ E LA +L+ N R+++E M+ +A LTQ + + Sbjct: 304 GRVGKSNLGANLLATNCHNEANKLANELEKHNNERKVIELLMINEAIDIALTQ----KDS 359 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S++ V + WHPG++G++A +LKEKF +P ++ +G G S RSI G D + A Sbjct: 360 SLLFVVKEGWHPGVIGIVAGKLKEKFDKPVVVVA-LNNGIGKASCRSILGIDFSAEIINA 418 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +++ GGGHAMAAG T L DF + L + + D L + V Sbjct: 419 KSKDLIISGGGHAMAAGFTATASKLQELQDFLNDAFSISINKLASYKHAEYDIDLTVNGV 478 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544 N L++ L++ P+G GN P+F F + + +V H++ ++ L AI Sbjct: 479 NFRLMEELKTLEPFGPGNYEPIFKFDDLFILKADIVGSKHIKCMLAPDKQYFGNKALSAI 538 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F GTP + L+ SR + + G L +N W+ + QL + D Sbjct: 539 VFDAVGTPFEDILLSSRARHISAIGTLKMNNWKYNYTIQLIIKDI 583 >gi|157828569|ref|YP_001494811.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933283|ref|YP_001650072.1| RecJ [Rickettsia rickettsii str. Iowa] gi|157801050|gb|ABV76303.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908370|gb|ABY72666.1| RecJ [Rickettsia rickettsii str. Iowa] Length = 587 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 222/585 (37%), Positives = 329/585 (56%), Gaps = 14/585 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+PD Sbjct: 6 SINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLLPD 63 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L D +KA R V AI N++KI IF DYDVDGA S AL+ ++ ++Y+PDRI Sbjct: 64 PFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPDRI 123 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH A Sbjct: 124 AEGYGPTPFAMQKIKDHGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHITTEILPDA 183 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVALA 248 A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVAL Sbjct: 184 VAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVALG 243 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 TVCD++ L GLNRA+V GL V +++ N G+K L + + +LG+++GP INAG Sbjct: 244 TVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRINAG 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q + Sbjct: 304 GRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----QDS 359 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 SV+ + + WHPG++G++A +LKEKF +P I+ + G G S RSI G D G + A Sbjct: 360 SVLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIINA 418 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +L+ GGGHAMAAG TV L +FF + L + D L ++V Sbjct: 419 KSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVNSV 478 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544 N L++ L + P+G GN P+F F + + +V H++ ++ L AI Sbjct: 479 NFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAI 538 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AF GT + L+ + K + G L N W+ + QL + D Sbjct: 539 AFNSVGTAFEDVLLSPKTKNIAAIGTLKTNNWQDNYTIQLIIKDI 583 >gi|57239581|ref|YP_180717.1| single-stranded-DNA-specific exonuclease recJ [Ehrlichia ruminantium str. Welgevonden] gi|57161660|emb|CAH58590.1| putative single-stranded-DNA-specific exonuclease RecJ [Ehrlichia ruminantium str. Welgevonden] Length = 585 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 222/579 (38%), Positives = 336/579 (58%), Gaps = 16/579 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 ++G W + L I QK + +IVAR+L R ++I+ +FL P+++ +P+P Sbjct: 14 VTGALW--KPYDVNLRDILTIKQKFYLSEIVARILSARKINIEEISNFLYPTLKSSLPNP 71 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + D DKA RI AI+N E I+IFGDYDVDGA S AL+ ++LS V +YIPDRI Sbjct: 72 FHMLDMDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIGVPTTIYIPDRIC 131 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + K G L ITVDCG+ +++ + A + +DVIVIDHH + A Sbjct: 132 EGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLPDAV 191 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250 A++NPNRLD+ S +L GV FL+LV +++ L++ N +L++ LDLVAL TV Sbjct: 192 AVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFFKNNQEPNLINYLDLVALGTV 251 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P+IGLNR +V +GL + + N GLK L + + + LG+ IGP INAGGR Sbjct: 252 CDVMPIIGLNRTFVKQGLKIMTTRQNLGLKTLSDVIGLEEKPNIYQLGFNIGPHINAGGR 311 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G ++LG+RLL +++ +E ++ KL N R+ +E+ +A ++ Sbjct: 312 VGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQIEATIISSN---- 367 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I++ WHPGI+G++A RLK+KF PS IS E+G G S RSI D+G + A Sbjct: 368 IIIATGNWHPGIIGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPDVDLGAAILEAKA 426 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 GI+++GGGHAMAAG +++ L +F + HNI VFK+DG++ A A+N+ Sbjct: 427 LGIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINT----RKVFKVDGIVTAEAINL 482 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L L+ P+G GNP P F N ++++ V+ +H++ + ++ I FR G Sbjct: 483 KLWKELQFLEPFGIGNPEPRFILTNIRIKNSEVIGESHIRC-LIYDNKTFIKGICFRCIG 541 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG L++ + G + +NYWRG++ Q + DA Sbjct: 542 TELGTTLLECTTTTLL--GKISINYWRGNENIQFIIEDA 578 >gi|332977810|gb|EGK14567.1| single-stranded-DNA-specific exonuclease RecJ [Desmospora sp. 8437] Length = 791 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 179/591 (30%), Positives = 301/591 (50%), Gaps = 27/591 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S RW + +E ++ + + I + AR+L++R V + A+ FL S+ L P Sbjct: 14 SKTRWQLVEAEE--SQVRELAGELGIHPLTARLLIHRGVSDPEQARRFLQVSLSELY-SP 70 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ ++A RI A+ EKI+I+GDYD DG +S +L+M+ + + YIP+R Sbjct: 71 FLMDGIEEAVDRIRTALDRREKILIYGDYDADGVSSTSLLMKVFRGLDADVDYYIPNRFT 130 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N + + K G QL+I+VD G ++ ++A G+D+I+ DHH+ + Sbjct: 131 EGYGLNENALRKAKEAGVQLMISVDTGISAVKEAKFARELGLDLIITDHHEPPAVLPEGV 190 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP + D L GV F + + + + LLDLVAL T+ D Sbjct: 191 AVINPKKPDCSYPCKLLAGVGVAFKLAHALLGRVPE-----------ELLDLVALGTIAD 239 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +VPL+ NR GL R+ NPGL AL++ I +TA ++G+ +GP INAGGR+ Sbjct: 240 LVPLMDENRVIAALGLKEINRRRNPGLSALMDVAGIQGEVTAGHVGFSLGPRINAGGRLD 299 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL+++D ++ +LA +LD +N+ R+ + + +A A+V + + IV Sbjct: 300 TAATAVELLLTEDPEQARVLAEELDGMNRERQKLVEEIAAEACAQV--ESAPEKHRRFIV 357 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V W+ G++G++A+RL EK+ RP+ + +E+ G GS RSI G D+ + ++ Sbjct: 358 VAAPGWNVGVIGIVASRLVEKYYRPTIVLGIDEETGMAKGSARSIAGLDLYRALTTC--G 415 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L + GGH MAAG+++ R N + A + P+ +++ L+ VN+ Sbjct: 416 DLLPQFGGHEMAAGMSLPRENIEEFHRRLDQIAGEWLREEDYIPLSRVEADLSIGEVNLD 475 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 LI LE P G GNP P F L ++V+ HL+M E + ++L+A+ FR+ Sbjct: 476 LIKELERLEPCGMGNPTPRFQLRGAGLSRLQVMGREKNHLKMVLEVE-GDSLEAVGFRM- 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G E +R + + G L +N W + Q + D F + Sbjct: 534 GELAAEIAPSARPE---LLGELSINEWNHRRSPQFLIRDIRVPHLQVFDWR 581 >gi|310643546|ref|YP_003948304.1| single-stranded-DNA-specific exonuclease recj [Paenibacillus polymyxa SC2] gi|309248496|gb|ADO58063.1| Single-stranded-DNA-specific exonuclease RecJ [Paenibacillus polymyxa SC2] Length = 798 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 304/592 (51%), Gaps = 26/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S +RW + + A +T++ I +++R+LVNR V+ A FL S+ + DP Sbjct: 4 SQYRW--KTPEVNLEAAQPLTEELGISPLLSRLLVNRGVTTAGEANRFLYGSVDDVH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L +A RI QA+ E I+I+GDYD DG +S +LM++ + + ++YIP R Sbjct: 61 FLLLGMKEAVPRIRQALERGEHILIYGDYDADGVSSTSLMIQLMRFLKASYDIYIPHRSN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ +G L+ITVD G ++ + + YAT+ GIDVIV DHH+ + AY Sbjct: 121 EGYGLHNHALDWAHQQGVTLVITVDTGISAVEQIAYATSLGIDVIVTDHHEPPAVLPEAY 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 L+NP D L GV + + + + ++ A+ TV D Sbjct: 181 TLINPKLPDCPYPFKGLAGVGVALKLAQALLSEVPE-----------EWFEIAAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311 ++PL G NR V +G+ R PG++AL+ + N+ + + P INA GR+ Sbjct: 230 LMPLHGENRTIVRRGIQSMRNSAFPGIRALLHVAGVEISTVTSVNIAFALAPRINASGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL ++ +E + LA LD+LN+ R+ + ++EQAE ++ ++ + + SVI Sbjct: 290 DHAGRAVSLLTTEKEEEADQLAHALDLLNRERQQVVERIVEQAEQQLASKLNGDKLPSVI 349 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G+ W+ G+VG++A++L +++ RP+ + + E G GS RSI DI ++ E Sbjct: 350 VLAGEGWNVGVVGIVASKLLDRYYRPTIILGIDTETGMCKGSARSIPALDIYSALTDCHE 409 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH AAG+T+ R + + ++A +I+ P+ + D V +++ Sbjct: 410 --LMEHFGGHPSAAGMTLSRDHLELFEERLNRYAGSILTPEDFIPIAEADMVCRLDEISL 467 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 +++ LE P+G GNP+P F +L+ R + H+++ E Q+ +L AIAFR Sbjct: 468 QVVEELELLQPFGMGNPSPRFVLQGLQLREARKMGREKNHVKLLLE-QNGLSLDAIAFRR 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L +FL Q + + G L +N W G + QL + D F + Sbjct: 527 GD--LADFLQQQTD--IDLLGELSINEWNGKRSLQLMMQDIRVQAPQIFDYR 574 >gi|58584384|ref|YP_197957.1| single-stranded DNA-specific exonuclease RecJ [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418700|gb|AAW70715.1| Single-stranded DNA-specific exonuclease RecJ [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 579 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 231/587 (39%), Positives = 332/587 (56%), Gaps = 16/587 (2%) Query: 6 FLGVEC-SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 LG+E I+ W + L +TQ+ +P+I+AR L R V+I+ A +FL P Sbjct: 2 LLGIEKRGITNALWKLQ--EADQREVLTLTQRFELPEILARTLAIRGVNIENAGNFLYPL 59 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR L+PDP L D DKA RI+QAI N E I IFGDYDVDGA S AL+ R+L +++ Sbjct: 60 IRSLLPDPFHLLDMDKAVFRIIQAINNDENIAIFGDYDVDGATSSALISRYLRAIGIHSI 119 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDR+ +GYG N + + + +G L I+VDCG+ +Y ++ A G+DVIVIDHH Sbjct: 120 IYIPDRVDEGYGLNSNALLQLKKKGIDLCISVDCGTLAYQPIEDAKGFGLDVIVIDHHLG 179 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLL 242 + A A+VNPNRLD+ S L A GV FL+ V + + LR+ + DL LL Sbjct: 180 TEKLPSAIAVVNPNRLDESSPYNSLAAVGVSFLLTVALNKSLREQDFFAGKKEPDLFDLL 239 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVAL TVCDV+ + GLNRA+V +GL V + N GL+ L + + I L + IG Sbjct: 240 DLVALGTVCDVMQITGLNRAFVSQGLKVMSARKNVGLRVLFDALGILERPNVSRLSFNIG 299 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIGE+ LG+RLL +DD +E + +A+KL LN R++ME+ L +A +V Sbjct: 300 PCINAGGRIGEALLGARLLSTDDKKEADSIALKLIDLNNARKMMENEALLEAIIQVEKST 359 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ WH G++G++A+RLKEKF P+ IS G S RSI G DIG Sbjct: 360 QSGAN---FIMVSGNWHQGVIGIIASRLKEKFHLPTIVISLNNR-IGKASCRSIPGVDIG 415 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 V A ++++GGGH+MAAG + L DF + K+DG+ Sbjct: 416 AAVLSAKCMNLIIEGGGHSMAAGFLINEDKMSDLHDFLTERFAYSTND----KALKVDGI 471 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + A A+N++L + L+ P+G GNP P F K++ +V + H++ D ++ Sbjct: 472 VTAKAINLSLWNQLQRLEPFGVGNPEPRFIIQGAKIRKPEIVGVDHIKCFIVDDD-VMVR 530 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAFR T LG +M+ + + G + +NYW G++ Q + D Sbjct: 531 AIAFRSANTHLGSAIMEGNIEA--ILGKISMNYWNGNEFVQFLIEDV 575 >gi|157964581|ref|YP_001499405.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia massiliae MTU5] gi|157844357|gb|ABV84858.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia massiliae MTU5] Length = 608 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 222/587 (37%), Positives = 333/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 25 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 82 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D +KA R V AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 83 PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 142 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 143 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 202 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 203 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMKYLDLVA 262 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL + +++ N G+K L + ++ +LG+++GP IN Sbjct: 263 LGTVCDMMKLTGLNRAFVASGLKIMQQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRIN 322 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 323 AGGRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQ----Q 378 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A +LKEKF +P I+ + G G S RSI G D G + Sbjct: 379 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 437 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 438 NAKSKDLLIAGGGHAMAAGFTVTADKLQELQNFFNNAFRISINKLENYKHAEYDIELTVN 497 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 +VN L++ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 498 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 557 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ S+ K + G L N W+G+ QL + D Sbjct: 558 AIAFNSVGTAFEDVLLSSKAKNIAAIGTLKTNNWQGNYTIQLIIKDI 604 >gi|58579570|ref|YP_197782.1| single-stranded-DNA-specific exonuclease recJ [Ehrlichia ruminantium str. Welgevonden] gi|58418196|emb|CAI27400.1| Single-stranded-DNA-specific exonuclease recJ [Ehrlichia ruminantium str. Welgevonden] Length = 590 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 222/579 (38%), Positives = 336/579 (58%), Gaps = 16/579 (2%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 ++G W + L I QK + +IVAR+L R ++I+ +FL P+++ +P+P Sbjct: 19 VTGALW--KPYDVNLRDILTIKQKFYLSEIVARILSARKINIEEISNFLYPTLKSSLPNP 76 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + D DKA RI AI+N E I+IFGDYDVDGA S AL+ ++LS V +YIPDRI Sbjct: 77 FHMLDMDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIGVPTTIYIPDRIC 136 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + K G L ITVDCG+ +++ + A + +DVIVIDHH + A Sbjct: 137 EGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLPDAV 196 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATV 250 A++NPNRLD+ S +L GV FL+LV +++ L++ N +L++ LDLVAL TV Sbjct: 197 AVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFFKNNQEPNLINYLDLVALGTV 256 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+P+IGLNR +V +GL + + N GLK L + + + LG+ IGP INAGGR Sbjct: 257 CDVMPIIGLNRTFVKQGLKIMTTRQNLGLKTLSDVIGLEEKPNIYQLGFNIGPHINAGGR 316 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G ++LG+RLL +++ +E ++ KL N R+ +E+ +A ++ Sbjct: 317 VGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQIEATIISSN---- 372 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I++ WHPGI+G++A RLK+KF PS IS E+G G S RSI D+G + A Sbjct: 373 IIIATGNWHPGIIGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPDVDLGAAILEAKA 431 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 GI+++GGGHAMAAG +++ L +F + HNI VFK+DG++ A A+N+ Sbjct: 432 LGIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINT----RKVFKVDGIVTAEAINL 487 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L L+ P+G GNP P F N ++++ V+ +H++ + ++ I FR G Sbjct: 488 KLWKELQFLEPFGIGNPEPRFILTNIRIKNSEVIGESHIRC-LIYDNKTFIKGICFRCIG 546 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG L++ + G + +NYWRG++ Q + DA Sbjct: 547 TELGTTLLECTTTTLL--GKISINYWRGNENIQFIIEDA 583 >gi|308174463|ref|YP_003921168.1| single-strand DNA-specific exonuclease [Bacillus amyloliquefaciens DSM 7] gi|307607327|emb|CBI43698.1| putative single-strand DNA-specific exonuclease [Bacillus amyloliquefaciens DSM 7] gi|328554383|gb|AEB24875.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus amyloliquefaciens TA208] Length = 785 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 188/593 (31%), Positives = 278/593 (46%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW Q + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQ--QPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L +A RI A+ E IMI+GDYD DG S ++M+ L S N + YIPDR Sbjct: 60 PYELKGMREAVDRIKLAVSRGEPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 TEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKELGLDVIITDHHEPGPELPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P + L GV F + + L + ++LDL A+ TV Sbjct: 180 FAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPE-----------AMLDLAAIGTVA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR G+ R PGLKALI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLIASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL++DD E E LA +D LN+ R+ M M E+A V Q S Sbjct: 289 IEQADPAVHLLMTDDQFEAEELASDIDRLNKERQKMVKTMTEEAVEMVQQQGG---NPSA 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L E+F RP+ + + E G GS RSI GF++ S + Sbjct: 346 IVVAKAGWNPGVVGIVASKLAERFYRPAVVLGMDEEQGIAKGSARSIRGFNL--FTSLSQ 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T++ + L D + A + PV ++D V + Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I L P+G NP P N L +R++ H++MT ++ DS L + F Sbjct: 464 VESITELNMLSPFGMLNPKPHVMVENAVLDEVRLIGANKNHVKMTVKN-DSAALDCVGFN 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G + + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELEAG----IVPGSTISIVGEMSINEWNNRKKPQLMIKDAAVPEWQLFDIR 571 >gi|16079816|ref|NP_390640.1| single-strand DNA-specific exonuclease [Bacillus subtilis subsp. subtilis str. 168] gi|221310700|ref|ZP_03592547.1| hypothetical protein Bsubs1_15096 [Bacillus subtilis subsp. subtilis str. 168] gi|221315024|ref|ZP_03596829.1| hypothetical protein BsubsN3_15007 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319945|ref|ZP_03601239.1| hypothetical protein BsubsJ_14918 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324226|ref|ZP_03605520.1| hypothetical protein BsubsS_15062 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342119|sp|O32044|RECJ_BACSU RecName: Full=Single-stranded-DNA-specific exonuclease recJ gi|2635226|emb|CAB14721.1| putative single-strand DNA-specific exonuclease [Bacillus subtilis subsp. subtilis str. 168] Length = 786 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 189/593 (31%), Positives = 281/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQRPDQD--KVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +AA RI QAI EKIMI+GDYD DG S ++M+ L S + YIPDR Sbjct: 60 PFEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 KEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+V+P + L GV F + + L LLDL A+ T+ Sbjct: 180 RAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPD-----------ELLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR GL RR GLK LI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLIATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+S+DS E E LA ++D LN+ R+ M S M ++A V Q D Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT---A 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L ++F RP+ + +E+ G GS RSI GF++ S + Sbjct: 346 IVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNL--FESLSE 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T++ + L + A N + PV ++D V + Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCGVEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I + P+G NP P N L+ +R + H++MT ++ S+ L + F Sbjct: 464 VESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQ-LDCVGFN 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G R+ + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELQEG----IVPGSRISIVGEMSINEWNNRKKPQLMIKDAAVSEWQLFDLR 571 >gi|118580215|ref|YP_901465.1| single-stranded-DNA-specific exonuclease RecJ [Pelobacter propionicus DSM 2379] gi|118502925|gb|ABK99407.1| exonuclease RecJ [Pelobacter propionicus DSM 2379] Length = 568 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 186/581 (32%), Positives = 286/581 (49%), Gaps = 19/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 +W+ + A+ + AI + A +L R +S A D FL+PS+ ++ DP Sbjct: 4 KQWIVRTAPVELP---AMAGEKAILPLTAAILAGRGISEPDAMDAFLSPSLADML-DPSR 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + A R+++A EKI ++GDYDVDG L++ FL + + +IP+R DG Sbjct: 60 MKGMADAVARLLEARRRQEKITVYGDYDVDGITGTTLLVSFLRQTGFDCDYFIPNRFDDG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++ IN GA LI++VDCG T+ + + +G ++I++DHH K A A+ Sbjct: 120 YGLNGEALDRIINAGAALILSVDCGITAVEEALFCRQRGAELIIVDHHAPKETLPDACAV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCD 252 +NP + L GV F +LV + LR + DL LDLVAL T+ D Sbjct: 180 LNPLQSGCDYAFKCLAGVGVAFNLLVALRAALRDQGSFGSDSGPDLRQWLDLVALGTIAD 239 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 VVPLIG NR YV GL + PG++AL + + +++ +G+ + P +NA GR+ Sbjct: 240 VVPLIGQNRIYVTHGLRLLAAPCKPGIQALKKVAGVGGAVSSGQVGFRLAPRLNAAGRME 299 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL+ DD +A +LD N R+ +E A+L++A + V Q + IV Sbjct: 300 SAVPGVELLLGDDPPHCLAIAEELDAANGERQAIERAILQEAISLV-EQGGNYPDRRSIV 358 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG++A+RL E+F RP+ I+ +E G+G GSGRSI GF + + Sbjct: 359 LASPSWHQGVVGIVASRLAERFHRPTILIALDEQGQGKGSGRSIPGFHLLDALKVC--SP 416 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH A G+++ F+ A ++ P ID V L Sbjct: 417 LLERFGGHRHAVGVSLSGERVDDFSATFEAEARRLLGNGELMPRLDIDAEAEPREVTKEL 476 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G GNP P+ + + RVV HL++ D AIAFR+ Sbjct: 477 ALELKRLEPFGMGNPEPLLMMRSLTVLEQRVVGEDHLRLRLSRDDH-VFNAIAFRMASRT 535 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + E + + +N W GS QLRV D P E Sbjct: 536 VSE--------TIDIAFFPEMNQWNGSSTLQLRVKDLRPTE 568 >gi|15892684|ref|NP_360398.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia conorii str. Malish 7] gi|15619857|gb|AAL03299.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia conorii str. Malish 7] Length = 587 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 222/587 (37%), Positives = 331/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 4 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D +KA R V AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+K L + + +LG+++GP IN Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRHNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A +LKEKF +P I+ + G G S RSI G D G + Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 +VN L++ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 477 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ + K + V G L N W+ + QL + D Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAVIGTLKTNNWQDNYTIQLIIKDI 583 >gi|295132117|ref|YP_003582793.1| single-stranded-DNA-specific exonuclease RecJ [Zunongwangia profunda SM-A87] gi|294980132|gb|ADF50597.1| single-stranded-DNA-specific exonuclease RecJ [Zunongwangia profunda SM-A87] Length = 567 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 164/581 (28%), Positives = 270/581 (46%), Gaps = 22/581 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + ++ Q + +AR+L R + S + AK F P+++ L DP ++ Sbjct: 4 RWTIKP-NPNPDIVNSLMQSLGVGKPIARLLAQRGINSFEEAKKFFRPNLKDLH-DPYLM 61 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI +A+ E IM++GDYDVDG SVALM +L N YIPDR +GY Sbjct: 62 RDMDKAVARIEKALAEEENIMVYGDYDVDGTTSVALMSSYLKTRYPNVATYIPDRYNEGY 121 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YA +GID ++ DHH+ + A A++ Sbjct: 122 GVSYQGIDFAADNDISLIIALDCGIKAIDKVAYAREKGIDFVICDHHRPGEKIPEAAAVL 181 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + LL LDLVA A D+VP Sbjct: 182 DPKREDCEYPYKELCGCGVGFKLIQALAEKRGDS-----IQVLLPYLDLVATAIGADIVP 236 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G KA++ ++ IT ++ ++I P INA GR+ Sbjct: 237 ITGENRILAYHGLHVINVAPRQGFKAILSQLK-KETITITDVVFVIAPRINAAGRMKHGL 295 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + ++ + A +++ N +R+ + ++ +A ++ + + Q+ VV Sbjct: 296 HAVELLTEEKEEQAQQFASEIEYHNSHRKDTDKSITAEALVQI--EELEEQERLSTVVYA 353 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 D WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E + Sbjct: 354 DHWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEACQEH--IE 410 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT++ + F++ + + TP ID + + + Sbjct: 411 QFGGHMYAAGLTIKEEEYDNFKRKFEEVVAETIDRKLLTPEISIDAEIELDEITPKFWRI 470 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLA--HLQMTFES-QDSETLQAIAFRVYGT 551 L+ P+G GN +P+F N + V HL+ ++ + I F + Sbjct: 471 LKQFAPFGPGNMSPLFMSRNLTDSGFGKCVGNEHTHLKCKVSQLNNTASFDVIGFNLGE- 529 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + K + N W G+ QL++ D V Sbjct: 530 ---KLELIQNKKSFSAVYAVDENEWNGNVSLQLKLKDLKEV 567 >gi|27379488|ref|NP_771017.1| single-stranded-DNA-specific exonuclease [Bradyrhizobium japonicum USDA 110] gi|27352640|dbj|BAC49642.1| single-stranded-DNA-specific exonuclease [Bradyrhizobium japonicum USDA 110] Length = 633 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 284/596 (47%), Positives = 374/596 (62%), Gaps = 4/596 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 QAFLGV S++ W L G +ALAI Q+H +P+++ARVL R V ID DFL+ Sbjct: 33 PQAFLGVTRSLTDKLWRDRLDARGAAQALAIVQRHQLPELLARVLAGRGVDIDAVPDFLD 92 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+IR LMPDP +T+ + AA+RI A EK+ IFGDYDVDGA S AL+ L HC ++ Sbjct: 93 PTIRKLMPDPFTVTEMEAAAKRIADAAAKGEKVAIFGDYDVDGATSAALLAWHLRHCGLD 152 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI +GYGPN + +GA L++TVDCG+TS + L A G+ V+VIDHH Sbjct: 153 PLIHIPDRIFEGYGPNTEAVRGLAAKGATLLVTVDCGTTSIEPLAEAKRLGMSVVVIDHH 212 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLL 239 Q +E ALVNPNRLDDLSG GHL A G+V + LV + R LRQ DLL Sbjct: 213 QAGTELPLVDALVNPNRLDDLSGLGHLAAVGLVLVTLVAVNRELRQRGFWNAEMPEPDLL 272 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 +L VAL TV DV PLIGLNRA+V KGL+ RR+ + G AL++ ++ P A +LG+ Sbjct: 273 GMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVARLNGPPEAWHLGF 332 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 M+GP +NAGGRIG ++LG RLL+ DS E +A +LD LN RR++E A QAEA+ L Sbjct: 333 MLGPRVNAGGRIGRADLGVRLLLEGDSVEAARIAAELDRLNTERRVIEQAAEAQAEAEAL 392 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + VIV + WHPG+VGL+A+RLKEKF RP+FAI+ E G G GSGRSI G Sbjct: 393 ASIGLEDKLGVIVTASEGWHPGVVGLVASRLKEKFSRPAFAIALEPGGIGTGSGRSIAGV 452 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 DIGK V AV +GIL+KGGGHAMAAG+T+ + + + V I Sbjct: 453 DIGKAVRQAVTDGILLKGGGHAMAAGVTLRKEKLAEFRAYLENALARDVAEARHVNELYI 512 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG ++A AV L L AGP+G+GNP V A P H+L V AHL++ F+S D Sbjct: 513 DGAVSARAVTTELAATLNRAGPFGSGNPEAVLALPAHQLVYADEVGQAHLRLRFKSGDGA 572 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEG 594 + IAFR G LG L+ +RG+++HV G L V+ ++G++R Q RV+D + P +G Sbjct: 573 IVNGIAFRSVGQKLGNALVANRGQQLHVAGSLSVDRYQGAERVQFRVIDVALPDQG 628 >gi|34581633|ref|ZP_00143113.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia sibirica 246] gi|28263018|gb|EAA26522.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia sibirica 246] Length = 587 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 221/587 (37%), Positives = 330/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 4 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D +KA R V AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+K L + + +LG+++GP IN Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A +LKEKF +P I+ + G G S RSI G D G + Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVAAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 +VN L++ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 477 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ + K + G L N W+ + QL + D Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583 >gi|295706718|ref|YP_003599793.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium DSM 319] gi|294804377|gb|ADF41443.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium DSM 319] Length = 780 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 182/593 (30%), Positives = 296/593 (49%), Gaps = 29/593 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S RW E + I +VA +L+NR ++ + A++FL+ DP Sbjct: 4 SKKRWNVQECDE--QLVNEFVENLNITPLVASLLLNRGMTTVEAAREFLHVD-AQTFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI ++EKIMI+GDYD DG +S ++M+ L + + YIP+R Sbjct: 61 FLLHDMDKAVARIQQAIDHNEKIMIYGDYDADGVSSTSVMLSALQQLGADVDFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +K G QL+ITVD G ++ + YA D+I+ DHH+ AY Sbjct: 121 EGYGPNKAAFDKISAGGYQLVITVDTGISAVEETAYARELNFDLIITDHHEPGPVLPDAY 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV F + + L + LL+L + T+ D Sbjct: 181 AIIHPKLPGSTYPFKELAGVGVAFKLAHALLGELPE-----------HLLELAVIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRI 311 +VPL+ NR KGL + G++AL+ + E+ +G+ + P INA GR+ Sbjct: 230 LVPLVDENRLIARKGLDYLKLTKRTGIEALLSVCGVKREEINEDTIGFAMAPRINAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +++ LL++ +++E + LA ++D LN+ R+ + + + E+A V + SV+ Sbjct: 290 QDADPAVHLLMTTNAEEAKGLAKEIDALNKVRQQIVNDITEEAVEFVENMYPPDEN-SVL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFDIGKMVSFAVE 430 +VEG+ W+ G+VG++A+RL EKF RP+ +S + + GS RSIEGFD+ +S Sbjct: 349 IVEGEGWNAGVVGIVASRLVEKFYRPTIVLSIDSENRIAKGSARSIEGFDLFANLSKC-- 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAG+T+ + L + A N++ P+ +D V + + Sbjct: 407 RDILPHFGGHPMAAGMTLNSDDVEELRTRLNEQASNVLTEQDFIPITSVDTVCTTEEITL 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 I+ + + P+G NP P + S+R + HL++ FE D ++ A+ F Sbjct: 467 ENIEQMSALAPFGMHNPKPKVLIKDVHTTSMRKIGANKNHLKLVFEDSD-VSVDAVGFG- 524 Query: 549 YGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 LG L + ++ + G L +N W ++ QL V D S E F + Sbjct: 525 ----LGYILDEVSPIAKVSLVGELSINEWNNMRKPQLMVEDISVDEWQMFDYR 573 >gi|328912788|gb|AEB64384.1| putative single-strand DNA-specific exonuclease [Bacillus amyloliquefaciens LL3] Length = 785 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 188/593 (31%), Positives = 277/593 (46%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW Q + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQ--QPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L +A RI A+ E IMI+GDYD DG S ++M L S N + YIPDR Sbjct: 60 PYELKGMREAVDRIKLAVSRGEPIMIYGDYDADGVTSTSVMQTALRQLSANVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 TEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKELGLDVIITDHHEPGPELPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P + L GV F + + L + ++LDL A+ TV Sbjct: 180 FAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPE-----------AMLDLAAIGTVA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR G+ R PGLKALI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLIASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL++DD E E LA +D LN+ R+ M M E+A V Q S Sbjct: 289 IEQADPAVHLLMTDDQFEAEELASDIDRLNKERQKMVKTMTEEAVEMVQQQGG---NPSA 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L E+F RP+ + + E G GS RSI GF++ S + Sbjct: 346 IVVAKAGWNPGVVGIVASKLAERFYRPAVVLGMDEEQGIAKGSARSIRGFNL--FTSLSQ 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T++ + L D + A + PV ++D V + Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDIT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I L P+G NP P N L +R++ H++MT ++ DS L + F Sbjct: 464 VESITELNMLSPFGMLNPKPHVMVENAVLDEVRLIGANKNHVKMTVKN-DSAALDCVGFN 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G G + + G + +N W K+ QL + DA+ E F + Sbjct: 523 KGELEAG----IVPGSTISIVGEMSINEWNNRKKPQLMIKDAAVPEWQLFDIR 571 >gi|312131175|ref|YP_003998515.1| exonuclease recj [Leadbetterella byssophila DSM 17132] gi|311907721|gb|ADQ18162.1| exonuclease RecJ [Leadbetterella byssophila DSM 17132] Length = 567 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 167/578 (28%), Positives = 269/578 (46%), Gaps = 14/578 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W E + Q+ + +A +L R + + D AK F PS++ L DP + Sbjct: 3 KHWSYKPLPEDGE-VAELQQQLNVSSAMATLLWQRGIYTFDAAKHFFRPSLKDLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA R+ A+ EKI+I+GDYDVDG +VA++ FL VN Y PDR +G Sbjct: 61 MRDMDKAVDRVSAALNADEKILIYGDYDVDGTTAVAMVYGFLKKKHVNLLYYNPDRYTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ +G LII++DCG S D + YA + GID I+ DHH+ E A A+ Sbjct: 121 YGVSKQGIDYAKEQGVSLIISLDCGIKSADKVAYARSLGIDFIICDHHEPGEELPEAVAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D + L GV F +L + + +L LDL ++ D+V Sbjct: 181 LDPKRKDCIYPYKELTGNGVGFKLLSALCQTRG-----WEWAELEEYLDLCMVSIASDIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL LKAL+ + E++ + IGP INA GRI + Sbjct: 236 PITGENRILAFYGLQKLNASPRISLKALMNVAGTQGEMNIESVVFTIGPRINAAGRIRHA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D E LA + N R+ +++ + E+A + ++A V+ Sbjct: 296 RAAVELLLSEDEDEAMELAYAIQKHNTERKGLDARITEEALDLIKRDPWLYEEAWSTVLY 355 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+R E F RP+ + + GS RS+ GFD+ + E L Sbjct: 356 KEDWHKGVIGIVASRCIENFYRPTIIFTKAGEDYAAGSARSVAGFDLYGAIEACSEH--L 413 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGH AAG+T+ F + PV +D ++ S + Sbjct: 414 IQFGGHMHAAGMTISIDKIEDFRKAFDGEVKARLLEEQRIPVITVDLEVHLSELTPKFHK 473 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 +++ P+G N P+F N + ++ +V+ HL++ QD + AI F + Sbjct: 474 VMKQMSPFGPENMQPIFVSHNLRARTAQVLKEKHLKLEVV-QDGFSFPAIGFGLAPEFYR 532 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 E + G+ + L N++RG+ QL + D Sbjct: 533 EL---ASGRPFSMAYSLEENHFRGNTTQQLFIRDIKLA 567 >gi|58698831|ref|ZP_00373706.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Drosophila ananassae] gi|225630248|ref|YP_002727039.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia sp. wRi] gi|58534647|gb|EAL58771.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Drosophila ananassae] gi|225592229|gb|ACN95248.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia sp. wRi] Length = 579 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 231/582 (39%), Positives = 340/582 (58%), Gaps = 15/582 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+ W + + L +TQ+ +P+I+AR+LV R V+I+ A DFL P IR L+ Sbjct: 7 KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D DKA RI++AI N E + IFGDYDVDGA S AL+ R+L +++ +YIPD Sbjct: 65 PDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYG + + + G L I+VDCG+ +Y ++ A G+D+IV+DHH + Sbjct: 125 RVDEGYGLSTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247 A A+VNPNRLD+ S +L A GV FL++V + + LR+ DL LLDLVAL Sbjct: 185 SAVAIVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDV+ + GLNRA V +GL V + N GL+ L + + I + LG+ IGP INA Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIGE++LG+RLL +DD +E +A+KL LN R+++E+ L +A A+ Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ WH GI+G++A+RLKE+F P+ IS +G G S RSI G DIG V Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIGAAVLS 420 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A ++++GGGH+MAAG +++ L DFF + N + K D ++ A A Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N++L + L+ GP+G GNP P F K++ V+ + H++ D+ ++AIAFR Sbjct: 477 INLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVKAIAFR 535 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG +MQ K + G + +NYW G++ Q + D Sbjct: 536 SANTHLGSAIMQGNVKA--ILGKISMNYWNGNEFVQFLIEDV 575 >gi|197105103|ref|YP_002130480.1| single-stranded-DNA-specific exonuclease RecJ [Phenylobacterium zucineum HLK1] gi|196478523|gb|ACG78051.1| single-stranded-DNA-specific exonuclease RecJ [Phenylobacterium zucineum HLK1] Length = 598 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 223/587 (37%), Positives = 337/587 (57%), Gaps = 7/587 (1%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 +LGV S+SG RW + R ++ + + +AR L +R V + FLNP++ Sbjct: 10 YLGVTRSLSGRRWRERAACPDLTRRHQLS--LGLSEPLARALASRGVGEGEGETFLNPTL 67 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 + L PDP +D D+AA +V A+ N +I++F DYDVDGA+S AL++R+ + + Sbjct: 68 KALFPDPSCFSDMDRAAEILVDALENRRRIVVFADYDVDGASSAALLVRWFRAMGLEIAI 127 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV- 184 Y+PDR+ +GYGP+P+ + +EGA+L++TVDCG+ ++DAL A G+ V+VIDHH + Sbjct: 128 YVPDRLTEGYGPSPAAFRRLKDEGAELVVTVDCGAAAHDALACAGEIGLPVVVIDHHLMR 187 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 E P ALVNPNR D +SGQGHL AAGV F++L + R R+ P DL + LDL Sbjct: 188 PGEIPPIAALVNPNRPDCVSGQGHLAAAGVTFVLLAALNREARRRGLAPE-PDLRAWLDL 246 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 A+ +CDV L G NRA +GL V NPGL AL++ + ++G+++GP Sbjct: 247 AAMGAICDVTRLTGFNRALAAQGLKVMSGWKNPGLAALMQVAKGQGAASTFHVGFLLGPR 306 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGRIG S+LG+RLL +DD E LA +LD LN +R+ +E+ ++E A + Q + Sbjct: 307 INAGGRIGRSDLGARLLSTDDPDEAAALAAELDGLNASRKEVEAQVMEAAIRHI-EQESN 365 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGK 423 A ++V D WHPG++G++A RL+E++ +P + G GSGRS G ++G+ Sbjct: 366 AADAPCLLVAQDDWHPGVIGIVAGRLRERYRKPCIVVGIDRAANVGKGSGRSQPGVNLGR 425 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 V A EEG+L+ GGGHAMAAGL+V L DF + +ID ++ Sbjct: 426 AVQAAFEEGLLLAGGGHAMAAGLSVRPDAIPELRDFLNARLADEQAQAAAEDGLEIDALV 485 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A + AL + P+G GNP P FA + +++ + H++ T L+A Sbjct: 486 TARGCDRALWRDFQRLAPFGPGNPEPTFAAADMRIERPMALKGGHVRCTLTDSSGGKLKA 545 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +A+R+ T G L+Q G +HV G L + W+G + +L + D + Sbjct: 546 VAWRMADTEAGRRLLQEGGA-VHVAGRLKPDDWQGREGVELEIEDVA 591 >gi|258543197|ref|YP_003188630.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-01] gi|256634275|dbj|BAI00251.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-01] gi|256637335|dbj|BAI03304.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-03] gi|256640387|dbj|BAI06349.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-07] gi|256643444|dbj|BAI09399.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-22] gi|256646499|dbj|BAI12447.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-26] gi|256649552|dbj|BAI15493.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-32] gi|256652538|dbj|BAI18472.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655596|dbj|BAI21523.1| single-stranded-DNA-specific exonuclease RecJ [Acetobacter pasteurianus IFO 3283-12] Length = 610 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 230/599 (38%), Positives = 333/599 (55%), Gaps = 12/599 (2%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRAL---AITQKHAIPDIVARVLVNRNVSIDYAK 58 + A LGVE S+ G RW G E A+ Q+ IP+IV R+L R ++ D A Sbjct: 16 SSPAVLGVEASLIGRRWAWRAGAEDPALMRLGAALAQQLGIPEIVGRLLAMRQITPDQAS 75 Query: 59 DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118 FL P +R LMPDP LTD DKAA R+ +A+ N E I IFGDYDVDGA + A++ F Sbjct: 76 HFLEPKLRALMPDPSSLTDMDKAADRMAKAVQNREVIGIFGDYDVDGACASAILASFFEE 135 Query: 119 CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178 + +IPDR+ +GYGPN + ++ + +GA ++I VDCG+ S D L T++ DVIV Sbjct: 136 LGCTVHTHIPDRMTEGYGPNVAALDNLVAQGASILICVDCGTASADILSQVTDK-ADVIV 194 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LN 235 +DHH+ + P A VNPNR D SG H+CAA + FL V R LR+ + Sbjct: 195 LDHHKSEDALPPILATVNPNRPDCSSGLHHICAAALAFLAAVATTRDLRRADWFTADQPP 254 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 DL+ LDLVALATVCDV+PL GLNRA+V +GL + R+ GL AL+E ++ A Sbjct: 255 PDLMRQLDLVALATVCDVMPLHGLNRAFVTQGLKIMARRQRTGLNALMEIAGVTKAPDAF 314 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 + G+ +GP INAGGRI E+ LG RLL DS E +A +LD +N+ R+ +E+ +L++A Sbjct: 315 SCGFALGPRINAGGRIAEAALGLRLLRCPDSFEARQMAERLDAVNRRRQGVEADILDRAM 374 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 + Q +VI++ G WHPG+VG++A R+KE+F RP+ + +EDG GSGRS Sbjct: 375 QQAEAQ--KEAGHAVILLAGKDWHPGVVGIVAGRIKERFNRPALVGAEQEDGTIKGSGRS 432 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + G D+G ++ A + G+L GGGHAMAAG ++ F P Sbjct: 433 VPGLDLGTVIIAARQAGMLKTGGGHAMAAGFSLTADKLEDFHTFLDTRLAQAATLPEKVP 492 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF 533 +D V++ S L + + P+GAGNP P+ A P + + L++ Sbjct: 493 -LTVDAVVSISGATAELAQDMGALAPFGAGNPEPLLAIPRVTVIRADRIGRDGNTLRLLL 551 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +++ L+A+ FR + PL L + +H+ G+L W G + DA+ Sbjct: 552 KGENNGRLKALLFRAHENPLAAKLEDTTRPALHLAGYLRAESWNGRTDATFFIQDAAAA 610 >gi|239947713|ref|ZP_04699466.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia endosymbiont of Ixodes scapularis] gi|239921989|gb|EER22013.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia endosymbiont of Ixodes scapularis] Length = 599 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 223/587 (37%), Positives = 334/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 16 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 73 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D +KA R V+AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 74 PDPFHLLDMEKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLNIICDIYVPD 133 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 134 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 193 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL + I L++ N +L+ LDLVA Sbjct: 194 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFVTAILSNLKKQNYFTQPMLQPNLMKYLDLVA 253 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+KAL + ++ +LG+++GP IN Sbjct: 254 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKALYDMAGLNEIPKCYHLGFILGPRIN 313 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 314 AGGRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQ----Q 369 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A RLKEKF +P I+ + G G S RSI G D G + Sbjct: 370 DSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 428 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 429 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVN 488 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 +VN L++ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 489 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCILVPNKRGFGNKALS 548 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ + K + G L N W+ + QL + D Sbjct: 549 AIAFNSVGTSFEDVLLSPKAKNITAIGTLKTNNWQDNYTIQLIIKDI 595 >gi|325286103|ref|YP_004261893.1| single-stranded-DNA-specific exonuclease RecJ [Cellulophaga lytica DSM 7489] gi|324321557|gb|ADY29022.1| single-stranded-DNA-specific exonuclease RecJ [Cellulophaga lytica DSM 7489] Length = 562 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 170/578 (29%), Positives = 275/578 (47%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW + + + + +IVA++L+ R ++ + AK + P + L DP +L Sbjct: 2 RWTIKP-KPDAAKVAELQNALQVDEIVAKLLLQRGITTFEEAKKYFRPQLSDLH-DPYLL 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI QAI N E IM+FGDYDVDG SVAL+ +L N YIPDR +GY Sbjct: 60 KDMDLAIARIEQAIANEENIMVFGDYDVDGTTSVALVSSYLQSYYPNVTTYIPDRYKEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + + ++ + LII +DCG + D + YA +G+D I+ DHH+ + A A++ Sbjct: 120 GVSYAGIDYADDNDISLIIALDCGVKAVDKVAYAKEKGVDFIICDHHRPGATLPNAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 + R D LC GV F ++ + Q DL+ LDLVA A D+VP Sbjct: 180 DAKRNDCNYPYDELCGCGVGFKLIQALGSKRGQ-----TIEDLVPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G KA+I ++ +T ++ ++I P INA GR+ Sbjct: 235 ITGENRVLAYYGLQVINSTPRAGFKAIINQIKKDV-LTITDVVFVIAPRINAAGRMVHGL 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + ++ E A ++ N +RR ++ + ++A ++ ++ VV Sbjct: 294 HAVNLLTETNLEQAEEFAAAIEQYNADRRELDQEITKEALVQITDN--KEEKHFTSVVYN 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + + K S RS++GFD+ + + Sbjct: 352 ENWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYNALEAC--ADHIE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + F+K + + TP ID LN + ++ L+ + Sbjct: 409 QFGGHKYAAGLTLSEAQYDGFKKEFEKVVTKTIDPNLLTPEITIDAELNFNEISPKLMRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 ++ P+G GN +PVF N + + V AHL++ S + AI F + Sbjct: 469 IKQMEPFGPGNMSPVFMAENLQDTGYAKGVGQEEAHLKLAAVQNGSNPIGAIGFNLGN-- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + K L N W+G QL++ D Sbjct: 527 --KLPLVQNKKPFSAVFSLDENEWQGVVSLQLKLRDIR 562 >gi|254294222|ref|YP_003060245.1| single-stranded-DNA-specific exonuclease RecJ [Hirschia baltica ATCC 49814] gi|254042753|gb|ACT59548.1| single-stranded-DNA-specific exonuclease RecJ [Hirschia baltica ATCC 49814] Length = 609 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 224/591 (37%), Positives = 358/591 (60%), Gaps = 8/591 (1%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 AFLGVE S++G RW +A I+++ + PD++ ++L R V++D A + Sbjct: 18 TGPAFLGVEHSLTGRRWRVRP--VDDEKATEISRRLSKPDLIGKLLAGRGVTLDEADTYF 75 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+++ L PDP D D A I++A+ + K + DYDVDG S A++ ++ Sbjct: 76 SPTLKALFPDPSSFADMDAACEVILEALVSGRKCAVLADYDVDGGTSAAILTKYFKAWDR 135 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 +Y+PDR+ +GYGP+ E +GA+L++TVDCG+ + +AL+ A + G+DV+V+DH Sbjct: 136 ELILYVPDRLTEGYGPSVEAFESLKEQGAELVMTVDCGAAAVEALEAAHSLGLDVVVLDH 195 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLL 239 H ++SE PA A+VNPNR D SG GH+ AAGVVF++ + R+ RQ + P D + Sbjct: 196 HLMQSEPPPAAAVVNPNRPDCKSGCGHMAAAGVVFVLTAGLNRLARQKSVAPAGGLPDPM 255 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LDL AL T+CD+ PL G+NRA+V GL V +R N GL AL + + +P + + + Sbjct: 256 KWLDLCALGTLCDMAPLKGVNRAFVNAGLKVLQRMDNVGLAALSQVSGVEAPKSVYHATF 315 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP +NAGGRIG+ + ++LL ++D +E LA +L LN+ R+ +E+ +L++A Sbjct: 316 LLGPRLNAGGRIGDPWIAAKLLATEDRKEALALAERLQALNEARKEIEAEILDEATRIAE 375 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED--GKGIGSGRSIE 417 ++ + A IVV G+ WHPG++G++A RLKEKF RP+ I + E+ GSGRS+ Sbjct: 376 SRLVEKPDAGAIVVGGEGWHPGVIGIVAGRLKEKFHRPTIVIGWGEELGPVAKGSGRSVA 435 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 G ++G +++ A +EGI++ GGGHAMAAGL++E D+ ++ L V Sbjct: 436 GVNLGNLIAKASKEGIILSGGGHAMAAGLSLEPSQLEAFRDYMEESTAEAKKELEQARVL 495 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 ++DG+L+ ++ + L+ ++ AGPYGAG+P P+FA N + ++R V + HL +D Sbjct: 496 ELDGLLSPASADGELLLSVDGAGPYGAGSPEPIFAMANVRSHNVRRVGVDHLSFEILGED 555 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 L+AIAFR LG+ ++ G+ MH+ G L + WRG+ + Q V D Sbjct: 556 GGKLRAIAFRAADADLGQAIL--SGQMMHLAGKLKPDEWRGAGKVQFEVSD 604 >gi|42520197|ref|NP_966112.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409935|gb|AAS14046.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Drosophila melanogaster] Length = 579 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 232/582 (39%), Positives = 340/582 (58%), Gaps = 15/582 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+ W + + L +TQ+ +P+I+AR+LV R V+I+ A DFL P IR L+ Sbjct: 7 KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D DKA RI++AI N E + IFGDYDVDGA S AL+ R+L +++ +YIPD Sbjct: 65 PDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYG N + + G L I+VDCG+ +Y ++ A G+D+IV+DHH + Sbjct: 125 RVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247 A A+VNPNRLD+ S +L A GV FL++V + + LR+ DL LLDLVAL Sbjct: 185 SAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDV+ + GLNRA V +GL V + N GL+ L + + I + LG+ IGP INA Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIGE++LG+RLL +DD +E +A+KL LN R+++E+ L +A A+ Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ WH GI+G++A+RLKE+F P+ IS +G G S RSI G DIG V Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIGAAVLS 420 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A ++++GGGH+MAAG +++ L DFF + N + K D ++ A A Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N++L + L+ GP+G GNP P F K++ V+ + H++ D+ ++AIAFR Sbjct: 477 INLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVRAIAFR 535 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG +MQ K + G + +NYW G++ Q + D Sbjct: 536 SANTHLGSAIMQGNVKA--ILGKISMNYWNGNEFVQFLIEDV 575 >gi|89889907|ref|ZP_01201418.1| single-stranded DNA-specific exonuclease [Flavobacteria bacterium BBFL7] gi|89518180|gb|EAS20836.1| single-stranded DNA-specific exonuclease [Flavobacteria bacterium BBFL7] Length = 565 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 173/580 (29%), Positives = 275/580 (47%), Gaps = 23/580 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 RW Q I + Q+ I +A +LV R V AK F P + L DP ++ Sbjct: 2 RWTLKP-QPDIATQEKLAQELGIDSFLAGLLVQRGVDAFAKAKSFFRPDLNELH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A +RI +AI N+E I+++GDYDVDG SVALM FL YIPDR +GY Sbjct: 60 KDMDVAVQRIQKAIGNNENILVYGDYDVDGTTSVALMSTFLLSFYDRVATYIPDRYGEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YA +GID I+ DHH+ + A A++ Sbjct: 120 GVSYQGIDYAADNDFSLIIALDCGVKAIDKVAYAAEKGIDFIICDHHRPGKKLPNAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F + L+ LDLVA A D+VP Sbjct: 180 DPKRDDCTYPFDELCGCGVGFKLCQAFVEA-----NDWEFEMLIPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 ++G NR GL V G KA+I ++ + +T ++ ++I P INA GR+ + Sbjct: 235 IVGENRILAYHGLNVINTSPRAGFKAIIHQLKKDT-LTITDVVFIIAPRINAAGRMKHAL 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L+++DD +E + +A +++ N +RR + ++ E+A+ +++ + ++ VV Sbjct: 294 HAVELMVTDDFKEAQRIAAEIEEYNADRREADRSITEEAKQQIINN--NEEERFTTVVFQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D S RS+ GFD+ + + Sbjct: 352 ENWHKGVIGIVASRLIETYYRPTLVFTKSGD-YLAASARSVSGFDVYNALEQC--SDYIE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT++ N+ D F++ + TP KID +L ++ + Sbjct: 409 QFGGHKYAAGLTLKPENYSLFKDRFEEVVCATIEKQHLTPEIKIDAMLPLENISPKFYRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNL--AHLQMTF--ESQDSETLQAIAFRVYG 550 L+ PYG GN PVF + V HL++ D + AI F + Sbjct: 469 LQQMAPYGPGNMRPVFMTEKVMDTGYGKCVGKSEDHLKVKVVKNKNDRNGMDAIGFNLG- 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+ + + + + N W G+ QL + D Sbjct: 528 ---GKSDLVKNKVKFDIAYTISENEWNGNISLQLLLKDIK 564 >gi|157825818|ref|YP_001493538.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia akari str. Hartford] gi|157799776|gb|ABV75030.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia akari str. Hartford] Length = 587 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 220/587 (37%), Positives = 329/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 4 QTSINGKIWQQKLIHEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D KA R V+AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMKKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNVFRDLNIICDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K ++ +L+ITVDCG+ +Y+A++YA + +DVIVIDHH Sbjct: 122 RIAEGYGPTPFAMQKIKDKDTELLITVDCGAMAYEAIKYAKDLNLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSHLKKQNYFTQTMLQPNLMKYLDLVA 241 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+K L + ++ +LG+++GP IN Sbjct: 242 LGTVCDMMTLTGLNRAFVSSGLKVMQQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRIN 301 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 302 AGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKVIELLMIEEATEIALTQ----Q 357 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A RLKEKF +P ++ + G G S RSI G D G + Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALND-GIGKASCRSILGIDFGAEII 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINTLENYKHAEYDIDLTVD 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 VN L++ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 477 GVNFHLMEELNTLEPFGQGNHEPIFKFDDLFVLKAYIVGSKHIKCMLVPNKRSFGNKALS 536 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ + K + G L N W+ + QL + D Sbjct: 537 AIAFNSVGTSFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583 >gi|294501371|ref|YP_003565071.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium QM B1551] gi|294351308|gb|ADE71637.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus megaterium QM B1551] Length = 780 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 181/593 (30%), Positives = 294/593 (49%), Gaps = 29/593 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S RW E + I +VA +L+NR ++ + A++FL+ DP Sbjct: 4 SKKRWNVQECDE--QLVNEFVENLNITPLVASLLLNRGMTTVEAAREFLHVD-AQTFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI ++EKIMI+GDYD DG +S ++M+ L + + YIP+R Sbjct: 61 FLLHDMDKAVARIQQAIDHNEKIMIYGDYDADGVSSTSVMLSALQQLGADVDFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN +K G QL+ITVD G ++ + YA D+I+ DHH+ AY Sbjct: 121 EGYGPNKEAFDKISAGGYQLVITVDTGISAVEETAYARELNFDLIITDHHEPGPVLPDAY 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV F + + L + LL+L + T+ D Sbjct: 181 AIIHPKLPGSTYPFKELAGVGVAFKLAHALLGELPE-----------HLLELAVIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRI 311 +VPL+ NR KGL + G++AL+ + E+ +G+ + P INA GR+ Sbjct: 230 LVPLVDENRLIARKGLDYLKLTKRTGIEALLSVCGVKREEINEDTIGFAMAPRINAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +++ LL++ +++E + LA ++D LN+ R+ + + + E+A V + + SV+ Sbjct: 290 QDADPAVHLLMTTNAEEAKGLAKEIDALNKERQQIVNDITEEAVEFVESMYPPDEN-SVL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFDIGKMVSFAVE 430 +VEG+ W+ G+VG++A+RL EKF RP+ +S + + GS RSIEGFD+ +S Sbjct: 349 IVEGEGWNAGVVGIVASRLVEKFYRPTIVLSIDSENRIAKGSARSIEGFDLFANLSKC-- 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAG+T+ + L + A N++ P+ +D V + + Sbjct: 407 RDILPHFGGHPMAAGMTLNSDDVEELRRRLNEQASNVLTEQDFIPITSVDTVCTTEEITL 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 I+ + + P+G NP P + S+R + HL++ FE ++ A+ F Sbjct: 467 ENIEQMSALAPFGMHNPKPKVLIKDVHTTSMRKIGANKNHLKLVFED-SGVSVDAVGFG- 524 Query: 549 YGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 LG L + ++ + G L +N W + QL V D S E F + Sbjct: 525 ----LGYILDEVSPIAKVSLVGELSINEWNNMHKPQLMVEDISVDEWQMFDYR 573 >gi|229586785|ref|YP_002845286.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia africae ESF-5] gi|228021835|gb|ACP53543.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia africae ESF-5] Length = 587 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 220/587 (37%), Positives = 330/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 4 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 P+P L D +KA R V AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PNPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+K L + + +LG+++GP IN Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEATKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A +LKEKF +P I+ + G G S RSI G D G + Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 +VN L++ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 477 SVNFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ + K + G L N W+ + QL + D Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583 >gi|241116890|ref|XP_002401658.1| single-stranded DNA specific exonuclease RecJ, putative [Ixodes scapularis] gi|215493202|gb|EEC02843.1| single-stranded DNA specific exonuclease RecJ, putative [Ixodes scapularis] Length = 581 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 223/585 (38%), Positives = 333/585 (56%), Gaps = 14/585 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+PD Sbjct: 1 SINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLLPD 58 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L D +KA R V+AI N++KI IF DYDVDGA S AL+ ++ ++Y+PDRI Sbjct: 59 PFHLLDMEKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLNIICDIYVPDRI 118 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH A Sbjct: 119 AEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILPDA 178 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVALA 248 A+VNPNR+D+ S HL A GV FL + I L++ N +L+ LDLVAL Sbjct: 179 VAIVNPNRIDEKSEYKHLAAVGVAFLFVTAILSNLKKQNYFTQPMLQPNLMKYLDLVALG 238 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 TVCD++ L GLNRA+V GL V +++ N G+KAL + ++ +LG+++GP INAG Sbjct: 239 TVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKALYDMAGLNEIPKCYHLGFILGPRINAG 298 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q + Sbjct: 299 GRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQ----QDS 354 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S++ + + WHPG++G++A RLKEKF +P I+ + G G S RSI G D G + A Sbjct: 355 SLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEIINA 413 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +L+ GGGHAMAAG TV L +FF + L + D L ++V Sbjct: 414 KSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVNSV 473 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544 N L++ L + P+G GN P+F F + + +V H++ ++ L AI Sbjct: 474 NFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCILVPNKRGFGNKALSAI 533 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AF GT + L+ + K + G L N W+ + QL + D Sbjct: 534 AFNSVGTSFEDVLLSPKAKNITAIGTLKTNNWQDNYTIQLIIKDI 578 >gi|323490005|ref|ZP_08095226.1| single-stranded-DNA-specific exonuclease recJ [Planococcus donghaensis MPA1U2] gi|323396301|gb|EGA89126.1| single-stranded-DNA-specific exonuclease recJ [Planococcus donghaensis MPA1U2] Length = 780 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 199/592 (33%), Positives = 303/592 (51%), Gaps = 27/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S RW E + I + I ++A++LV R + + + A+ F+ + M DP Sbjct: 4 SKKRWRLTTPDE--QQVQDIQNELNISSVLAKILVTRGLNTAEAARSFMKMDVSG-MHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D D A RI QAI N EKI+++GDYD DG S +MM L + + IP+R Sbjct: 61 YLMKDMDIAIARIRQAIDNQEKIVVYGDYDADGVTSTTVMMTALQDLGADVSFMIPNRFK 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN L ++ + G +LI+TVD G + + + +A N G+DVI+ DHH + + A Sbjct: 121 HGYGPNTDLFQQAFDNGTKLIVTVDNGISGIEQVDFANNLGMDVIISDHHDIGEQLPNAL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + G L GV F + +Y + L++L A+ TV D Sbjct: 181 AIVHPRHPEGHYPFGELAGVGVAFKMAHALYEEVPD-----------HLIELTAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +VPL G NR +V +GL +P + AL E I IT E +G+M GP INA GR+ Sbjct: 230 LVPLHGENRLFVKEGLAALIDSPSPAIGALCEVAGIKQQDITEETIGFMFGPRINAIGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +++ ++ +++D E LA LDVLN+ R+ + + E+A +V Q V+ Sbjct: 290 QDADPAVQMFLTEDPAEARSLASGLDVLNKERQAIVKQITEEAMLQV-EQRYPEGVPRVL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV + W+PG+VG++A++L EKF RPS +S E+GK GS RSI+GF + A Sbjct: 349 VVAQEGWNPGVVGIVASKLTEKFYRPSIVLSLNPENGKAKGSARSIDGFHLY--NELAKN 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAG+T+E + L + + A + A PV ID L ++I Sbjct: 407 RDILPHFGGHPMAAGMTLEASDVDELRERLIRQAETSLTAEDLLPVVDIDIPLRLDEIDI 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 I+ + S P+G G P F + + SIR + HL+M +Q + TL A+ F + Sbjct: 467 TAIESMRSLAPFGMGFAKPKFYLESVHVSSIRKIGAAQNHLKMEL-TQHAVTLDAVGFGL 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 +G+ L + ++ V G L VN W G K+ QL V D + F + Sbjct: 526 G--SVGDEL--TPDVKIDVIGDLQVNEWNGRKKPQLMVEDVRTDQWQLFDIR 573 >gi|260459842|ref|ZP_05808096.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium opportunistum WSM2075] gi|259034644|gb|EEW35901.1| single-stranded-DNA-specific exonuclease RecJ [Mesorhizobium opportunistum WSM2075] Length = 593 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 305/587 (51%), Positives = 381/587 (64%), Gaps = 1/587 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + FL V S +G W L + ALAI Q H +PDIVARVL R V+ D + FL+P Sbjct: 6 RLFLDVRQSATGLAWEHRLTERQDMIALAIAQGHGVPDIVARVLAGRGVTADETERFLDP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 +IR L+PDP LTD D+AA RI A+ EK+ IFGDYDVDGAAS AL+ RFL+H SV + Sbjct: 66 TIRDLLPDPASLTDMDRAAARIAAAVMAKEKVAIFGDYDVDGAASSALLKRFLTHFSVPS 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPNP M + ++ GA LI+TVDCG+ S ++ A G DV+V+DHHQ Sbjct: 126 EIYIPDRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAVSVDAANAAGADVVVLDHHQ 185 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 V A A+VNPNR DDLSGQGHLCAAGVVFL LV R+LR P L LD Sbjct: 186 VGGALPAAIAVVNPNRDDDLSGQGHLCAAGVVFLALVQTARVLRGLTDAPPPDLLSL-LD 244 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 L ALATVCDVVPL G+NRA+VVKGL VAR+Q N GL AL I PI+ +L Y+IGP Sbjct: 245 LAALATVCDVVPLTGVNRAFVVKGLQVARQQKNEGLAALARVSRIGEPISTFHLAYLIGP 304 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRIG++ LGSRLL +DD E +A LD LNQ R+LME ML A A+ + Sbjct: 305 RINAGGRIGDAALGSRLLATDDPVEARTIAETLDRLNQERQLMEQEMLAAARAEADAELA 364 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 +++V + WHPGIVGLLA+RLK+ RP+FAI+F G G GSGRS+ GFD+G+ Sbjct: 365 GGSGPAIVVTASNNWHPGIVGLLASRLKDHARRPAFAIAFNAVGIGTGSGRSVSGFDLGR 424 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +V A G++VKGGGH MAAG+TVER G L FF++ A V L IDG L Sbjct: 425 LVREAATAGLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQDEESLAIDGAL 484 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A + L+D LE AGP+GAG+ PVF P H+L R V H++ +S +QA Sbjct: 485 AAEGATLGLLDALEKAGPFGAGHVAPVFVLPRHRLADARSVGTNHIRCELQSDSGGRIQA 544 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAFR T LGEFL ++RGK +HV G L N+W G++ Q R++DA+ Sbjct: 545 IAFRAVDTVLGEFLFKNRGKTVHVAGSLSGNHWNGNRTVQFRIIDAA 591 >gi|238650226|ref|YP_002916077.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia peacockii str. Rustic] gi|238624324|gb|ACR47030.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia peacockii str. Rustic] Length = 587 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 220/587 (37%), Positives = 329/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 4 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D +KA R V AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 182 DAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLVA 241 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+K L + + +LG+++GP IN Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVIQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRIN 301 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 302 AGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQ----Q 357 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A +LKEKF +P I+ + G G S RSI G D G + Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALND-GIGKASCRSILGIDFGAEII 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVN 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 +VN L++ L + P+G N P+F F + + +V H++ ++ L Sbjct: 477 SVNFPLMEELNTLEPFGQENHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALS 536 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT + L+ + K + G L N W+ + QL + D Sbjct: 537 AIAFNSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDI 583 >gi|312110096|ref|YP_003988412.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. Y4.1MC1] gi|311215197|gb|ADP73801.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. Y4.1MC1] Length = 785 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 183/589 (31%), Positives = 301/589 (51%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E I + ++ I ++A +LV+R V + + A FL P ++ DP +L Sbjct: 7 RWDVKRPDENI--VKHLVEQLRIDPLIATLLVHRGVRTAEEANAFLYP-LKQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A RI +AI + E I+++GDYD DG +S +M+ L + YIP+R +GY Sbjct: 64 DGMERAVVRIQRAIQDGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN ++G LIITVD G + + A G+DVI+ DHH+V AY ++ Sbjct: 124 GPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPTLPEAYEII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLD+ A+ T+ D+V Sbjct: 184 HPKKPGSTYPFRELAGVGVAFKVAHALLGEVP-----------RYLLDVAAIGTIADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R+ GL+AL + I I + +G++I P +NA GR+GE+ Sbjct: 233 LTGENRVLVAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + RLL+++D +E + LA ++D LN+ R+ + + + E+A + Q + V+VV Sbjct: 293 DPAVRLLMTEDEEEAKRLAKEMDDLNRERQQLVAEIAEEAAQIIQEQFPPSENK-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A+RL E+F RP+ +S + E G GS RSI GFD+ S + I Sbjct: 352 KEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDM--FSSLSTCRDI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH MAAG+T+ + G L A +++ TP+ ID V + S + +A+ Sbjct: 410 LLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + LE P+G GN P+F N ++++R V +HL+ F +Q+ + ++ F Sbjct: 470 EQLEKFAPFGVGNAKPLFLMENVSVETMRRVGADQSHLKAVF-AQNGAAIDSVGFGFGYL 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + ++ V G L +N W ++ QL + D + E F + Sbjct: 529 ----RDEIAPDAKVSVVGELVINEWNHLRKPQLMIYDMAVHECQLFDIR 573 >gi|194017157|ref|ZP_03055769.1| recombination protein J [Bacillus pumilus ATCC 7061] gi|194011025|gb|EDW20595.1| recombination protein J [Bacillus pumilus ATCC 7061] Length = 774 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 182/593 (30%), Positives = 285/593 (48%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 +S RW + ++++ I + A +LV R + + A+ FL D Sbjct: 3 LSKMRWEY--EHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L +A RI +AI E I+IFGDYD DG S ++++ L S + YIPDR Sbjct: 60 PFLLKGMKEAVERINKAIEEQESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN +GA L+ITVD G + + + A G+D+I+ DHH+ E A Sbjct: 120 KEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEIGLDLIITDHHEPSEELPEA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+V+P + L GV F V + L LLDL A+ T+ Sbjct: 180 LAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLP-----------TQLLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 D+VPL NR KGLM R+ PGLKAL++ + E +G+ I P +NA GR Sbjct: 229 DLVPLHDENRWLAKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+++D E E LA + LN+ R+ + S + E+A V DD S Sbjct: 289 IEQADPAVHLLMTEDKDEAEELARFVQELNKERQKIVSTITEEAIQMVEETGDDQ---SA 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L + F RP+ + +E+ + GS RSI GFD+ +S Sbjct: 346 IVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFHLSKC- 404 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L + ++A+ + P+ ++D V + Sbjct: 405 -RDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I+ + P+G NP P + +L+ IR + H++M+ + +D + L + F Sbjct: 464 VEAIEEVGMLSPFGMQNPKPFIMIEDVRLEEIRTIGANQNHIKMSLKDED-QLLDCVGFH 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G R+ V G + +N W K+ QL + DA E F + Sbjct: 523 QGQLK----EEVVTGSRISVIGEMSINEWNNRKKPQLMLKDARVDEWQLFDLR 571 >gi|260575454|ref|ZP_05843453.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sp. SW2] gi|259022374|gb|EEW25671.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sp. SW2] Length = 581 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 247/590 (41%), Positives = 344/590 (58%), Gaps = 11/590 (1%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 M ++AFL VE S +G RWV ++ A A+ Q +P + LV R V+ A + Sbjct: 1 MTNRAFLNVEASATGRRWVGPGTEQD-RLAEAMAQVTHLPLALCHTLVKRGVAPGEAAAY 59 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L PS+R L+PDPL L D KAA R VQA+ ++I +F DYDVDG AS AL++ +L Sbjct: 60 LAPSLRDLLPDPLSLRDMGKAAARFVQAVKARQRIAVFADYDVDGGASAALLLVWLRAMG 119 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 A +YIPDRI +GYGPN M + +II VDCG+ S++ + A DV+V+D Sbjct: 120 QGATLYIPDRIDEGYGPNAPAM-AALAAAHDVIICVDCGTLSHEPIAAAKAA--DVLVLD 176 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HH PA A+VNPNR D+ GHLCAA VVFL+LV R LR + DL++ Sbjct: 177 HHLGAETLPPALAVVNPNRQDEDGSLGHLCAASVVFLLLVEANRQLRAEG--TPGPDLMA 234 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 +LDLVALATV DV PL+G+NRA+V +GL V R+ GLKAL + + T LG++ Sbjct: 235 MLDLVALATVADVAPLLGVNRAFVRQGLRVMARRERIGLKALADVARMDQAPTPYALGFL 294 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRIG ++LG+RLL +DD E LA +LDVLN RR +E+A+ A A+ Sbjct: 295 LGPRINAGGRIGAADLGARLLATDDPHEAAALAERLDVLNTERREIEAAVRASALAQAEA 354 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + D ++ G+ WHPG+VG++AARLKE RP+ I + +G GSGRS+ G D Sbjct: 355 RGFDG---PLVWAAGEGWHPGVVGIVAARLKEGANRPAVVIG-FDGDEGKGSGRSVSGVD 410 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + EG++ +GGGH MAAGL++ R + +ID Sbjct: 411 LGAAIQRLASEGLIGRGGGHKMAAGLSLSRAQLEPAMERLGALLAKQGAGQGGPADLRID 470 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 G+L A +AL++ LE+AGPYGA +P P FAF + + S R + +HL+++F Sbjct: 471 GLLMPGAATMALVEQLEAAGPYGAASPAPRFAFAD-QAVSARRMGESHLRLSFSDGLGAR 529 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L+A+AF + PLG L R H+ G L +N + G + QLR+ DA+ Sbjct: 530 LEAVAFGAFDGPLGPMLENPGAARFHLAGRLEINSYGGRNKVQLRLEDAA 579 >gi|83858254|ref|ZP_00951776.1| single-stranded-DNA-specific exonuclease RecJ [Oceanicaulis alexandrii HTCC2633] gi|83853077|gb|EAP90929.1| single-stranded-DNA-specific exonuclease RecJ [Oceanicaulis alexandrii HTCC2633] Length = 592 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 226/595 (37%), Positives = 332/595 (55%), Gaps = 6/595 (1%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + GV S+ G W + AI + + D + R++ R ++ + A FL Sbjct: 1 MSEPLFGVRQSLGGRSWRLKAADDN--AIQAICRATGVSDALGRLMAARGLTAEDAPAFL 58 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R PDP L D+AARRI A+ ++I +F DYDVDGA S A + +L Sbjct: 59 APKLRDSFPDPSTLKGMDEAARRIWDALDAGDRIALFADYDVDGATSAAQLGGWLRTLGA 118 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + +Y+PDRI +GYGPN ++ +GA+L+IT+DCG+ S L A G+ V+VIDH Sbjct: 119 DPIIYVPDRIEEGYGPNAPALKSLKEQGARLVITLDCGAASVGPLTAAHEMGLPVVVIDH 178 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLL 239 H + E PA ALVNPN+ D+SG GHL AAGV F++L + R R+ ++L Sbjct: 179 HLMDGEIPPADALVNPNQPGDVSGCGHLAAAGVTFVLLAALNREGRRRGAFKGQAEPNVL 238 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 DL AL T+CDVV L G+NRA V +GL V PG+ AL + P + + G+ Sbjct: 239 DFADLAALGTICDVVSLTGVNRAIVAQGLKVMSAWSRPGMAALAAAAGVQGPASPYHAGF 298 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGR+G+S+LG+RL+++ D +E +A LD LN RR +E+ +L+QA+A+V Sbjct: 299 LLGPRINAGGRVGQSDLGARLMMTQDPKEAAHIAQTLDALNAERRAIETEVLDQAQAQVE 358 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEG 418 + +++ G+ WHPG++G++A R+KE+F RP+ I E G G GSGRS G Sbjct: 359 ALKLE-DDTPILIASGEHWHPGVIGIVAGRIKERFNRPAIVIGVDPETGLGKGSGRSCTG 417 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 ++G V+ A EEG+LV GGGHAMA GLTV+ G L D+ A + Sbjct: 418 VNLGAAVAAAREEGLLVAGGGHAMACGLTVDVNRIGELTDYLTARLKQEWIAAEEARTYS 477 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 +D V++ SAV+ + L +A PYG GNP P FAF + + + V H++ TFES Sbjct: 478 VDAVISPSAVSFEFCEALSAAEPYGMGNPEPRFAFSSLRRTYAQRVGTDHVRFTFESPGG 537 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L I+FR P+G+ L+ HV G L R ++ +L + D + + Sbjct: 538 GRLTGISFRSADQPMGQALLNGPDGLWHVAGKLRAEDNRYGRKAELHLEDLAKAD 592 >gi|329114086|ref|ZP_08242850.1| Single-stranded-DNA-specific exonuclease RecJ [Acetobacter pomorum DM001] gi|326696625|gb|EGE48302.1| Single-stranded-DNA-specific exonuclease RecJ [Acetobacter pomorum DM001] Length = 611 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 229/599 (38%), Positives = 330/599 (55%), Gaps = 12/599 (2%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRAL---AITQKHAIPDIVARVLVNRNVSIDYAK 58 + A LGVE S G RWV G E A+ Q+ IP+IV R+L R ++ D A Sbjct: 17 STPAVLGVEASFVGRRWVWRAGAEDPALMRLGAALAQQLGIPEIVGRLLAMRQITPDQAP 76 Query: 59 DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118 FL P +R LMPDP LTD DK A R+ +A+ N E I IFGDYDVDGA + A++ F Sbjct: 77 HFLEPKLRALMPDPSTLTDMDKVAARMAKAVQNREVIGIFGDYDVDGACASAILASFFEE 136 Query: 119 CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178 + +IPDR+ +GYGPN + ++ + +GA ++I VDCG+ S D L T++ DVIV Sbjct: 137 LGCTVHTHIPDRMTEGYGPNVAALDNLVAQGASILICVDCGTASADILCQMTDK-ADVIV 195 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LN 235 +DHH+ + P A VNPNR D SG H+CAA + FL V R LR+ + Sbjct: 196 LDHHKSEDALPPILATVNPNRPDCPSGLHHICAAALAFLAAVATTRDLRRADWFTANQPP 255 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 DL+ LDLVALATVCDV+PL GLNRA+V +GL + R+ GL AL+E ++ A Sbjct: 256 PDLMRQLDLVALATVCDVMPLHGLNRAFVTQGLKIMARRQRTGLNALMEIAGVTKAPDAF 315 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 + G+ +GP INAGGRI E+ LG RLL D+ E +A +LD +N+ R+ +E+ +L+ A Sbjct: 316 SCGFALGPRINAGGRIAEAALGLRLLRCPDNFEARQMAERLDAVNRRRQGVEADILDLAM 375 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 + Q +VI++ G WHPG+VG++A R+KE+F RP+ + +EDG GSGRS Sbjct: 376 QQAEAQ--KKAGHAVIMLAGKDWHPGVVGIVAGRIKERFNRPALVGAEQEDGTIKGSGRS 433 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + G D+G ++ A + G+L GGGHAMAAG ++ F P Sbjct: 434 VPGLDLGTVIIAARQAGMLKTGGGHAMAAGFSLTADKLEEFHTFLDTRLAQAATLPEKVP 493 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF 533 +D V+ S L + + P+GAGNP P+ A P + + L++ Sbjct: 494 -LTVDAVVAISGATAELAQDMGALAPFGAGNPEPLLAIPRVTVIRADRIGRDGNTLRLLL 552 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +++ L+A+ FR + PL L + +H+ G+L W G + DA+ Sbjct: 553 KGENNGRLKALLFRAHENPLAAKLEDTTRPALHLAGYLRAESWNGRTDATFFIQDAAAA 611 >gi|325105083|ref|YP_004274737.1| exonuclease RecJ [Pedobacter saltans DSM 12145] gi|324973931|gb|ADY52915.1| exonuclease RecJ [Pedobacter saltans DSM 12145] Length = 577 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 168/578 (29%), Positives = 275/578 (47%), Gaps = 19/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 RW L + Q+ I DI+A +L NR ++ AK F P ++ L DP + Sbjct: 14 KRWAEHLI-TNFEAVDKLAQELNISDILAHMLYNRGITSFSEAKAFFRPELQHLH-DPFL 71 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + ++A RI +AI +E I+++GDYDVDG SVAL+ F N + YIPDR ++G Sbjct: 72 MNGMEEAVARIEEAIRENENILVYGDYDVDGTTSVALVYSFFKEIYPNISYYIPDRYIEG 131 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ + LII +DCG + D ++YA ++GID I+ DHH E A A+ Sbjct: 132 YGISSQGIDFAADNDVSLIIALDCGIKAVDKVEYAKSKGIDFIICDHHLPGEEIPAAVAV 191 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P RLD L G+ F + + LDLVA++ D+V Sbjct: 192 LDPKRLDCNYPYKELSGCGLGFKLAQAYAEK-----NDVPFEKVCEYLDLVAVSIASDIV 246 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL GLKALIE + T ++ + IGP INA GRI ++ Sbjct: 247 PITGENRVLAYYGLQKLNNNPCNGLKALIELSGKTDRFTISDIVFSIGPRINAAGRIDDA 306 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLI+ +Q E +++ N R+ ++ + EQA + + ++ VV Sbjct: 307 KHSVRLLIASSTQLAEDAGFIINLKNTERKEYDTNITEQALNMIGS-SPEMIGRKSTVVY 365 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G++G++A+RL EK+ +P+ ++ + +G GS RS+ G+D+ + +L Sbjct: 366 DKNWHKGVIGIVASRLTEKYYKPTVVLT-DSNGHVAGSARSVLGYDLYEA--LCECSDLL 422 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT++ N + + F+ + + + ++ + S + Sbjct: 423 EQFGGHKYAAGLTMKPENVNKFIERFETVVASSITEEMLVQQISVEKCIGLSDITPKFFR 482 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 +L P+G N P+F +V HL+M+ +DS + I F L Sbjct: 483 ILNQFAPFGPQNMVPIFMTREVYSYGYGSIVGNNHLKMSVRQKDSSVFECIGFG-----L 537 Query: 554 GEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G++L Q +RG + + N W+ + QL + Sbjct: 538 GDYLEQINRGTPFDICYTIEENVWKDRRSIQLNIKGIK 575 >gi|254502532|ref|ZP_05114683.1| single-stranded-DNA-specific exonuclease RecJ [Labrenzia alexandrii DFL-11] gi|222438603|gb|EEE45282.1| single-stranded-DNA-specific exonuclease RecJ [Labrenzia alexandrii DFL-11] Length = 606 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 278/590 (47%), Positives = 374/590 (63%), Gaps = 3/590 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 + LGV S + W L A+AI+Q+H +PD+++RV+ R V+ A FL Sbjct: 11 GRLVLGVARSANDNAWRERLSAAETRAAMAISQQHGLPDVLSRVMAARGVAAADASAFLE 70 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 PS++ LMPDP L D D A R+ A+ +KI IFGDYDVDGA S A++ +L ++ Sbjct: 71 PSLKTLMPDPSSLVDMDAAVARVADAVQTGKKIAIFGDYDVDGATSSAVLANYLQWLGLD 130 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++IPDRI++GYGPN +E GA+L+IT+DCGSTS++A + A +DV+VIDHH Sbjct: 131 PVIHIPDRIIEGYGPNGPAIENLQAGGAELLITLDCGSTSFEAFETAKKLNLDVVVIDHH 190 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240 QV ALVNPNR DDLSGQGHL A GV FL +V + R LRQ DL++ Sbjct: 191 QVGETLPEVRALVNPNRQDDLSGQGHLAAVGVTFLFIVGLNRELRQRGAFSGRQAPDLMA 250 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LLDLVAL TVCDVVPL GLNRAYV +GL V ++ N GL AL + +S +LG++ Sbjct: 251 LLDLVALGTVCDVVPLQGLNRAYVTRGLAVMHQRQNHGLTALSDTARVSGKPAPYHLGFL 310 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL + D E +A +LD LN R+ ME+ MLEQA A+ Sbjct: 311 IGPRINAGGRIGDAALGARLLTTADPHEARAIAERLDQLNTERQAMEAVMLEQAGAEAAI 370 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + +V++ + WHPGIVGL+A+RLKE RP+FAI+++E GKG GSGRSI G D Sbjct: 371 AIEHR-DPAVLLTGSNDWHPGIVGLIASRLKEAHRRPAFAIAYDETGKGTGSGRSINGVD 429 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +GK V AV++G+L KGGGHAMAAGLTV + L FF + V A KID Sbjct: 430 LGKAVRKAVDDGLLEKGGGHAMAAGLTVRQEKAADLEAFFNDVLKDDVEAATAHRELKID 489 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 L A+ N+ L++MLE AGPYGAG+ PVFAFP H++ VV H++ T + D Sbjct: 490 AALTATGANLDLMNMLEKAGPYGAGHSEPVFAFPAHRISFADVVGKGHVRATLAAGDGTA 549 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L+ I F+ P G+ L++ RG+ +HV G L ++ W+G+ + QLR+LD + Sbjct: 550 LKGICFKAEDKPHGQMLLEGRGRNLHVAGTLSIDTWQGTPKVQLRILDVA 599 >gi|212638568|ref|YP_002315088.1| Single-stranded DNA-specific exonuclease RecJ [Anoxybacillus flavithermus WK1] gi|212560048|gb|ACJ33103.1| Single-stranded DNA-specific exonuclease RecJ [Anoxybacillus flavithermus WK1] Length = 789 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 182/593 (30%), Positives = 292/593 (49%), Gaps = 31/593 (5%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 S RW Q + I Q I +VA +LV+R +++ A+ F + Sbjct: 6 ASKTRWNIQ--QVNEQQVQMIAQALHITPLVASLLVSRGYHTVEAARSFFER--KQSFHS 61 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L D +KA RI +AI N E I++FGDYD DG +S +M+ L N + YIP+R Sbjct: 62 PFLLNDMEKAVERIEKAITNDEHILVFGDYDADGVSSTVVMVSALREKGANVSFYIPNRF 121 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN +G LIITVD G ++ A GID+I+ DHH+ A Sbjct: 122 TEGYGPNEQAFRLAKQQGVSLIITVDTGISALHEANVAKQLGIDLIITDHHEPGPVLPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA ++P + HL GV F + + + LD+VA+ T+ Sbjct: 182 YATIHPKISPN-YPFKHLAGVGVAFKLAHALIGRVP-----------YEWLDVVAIGTIA 229 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+VPL N G+ R+ GL+AL ++ +S E+ + +MIGP +NA GR Sbjct: 230 DLVPLQDENHLLARLGIEQFRQTNRLGLQALCKQCGVSHTAVTEDTIAFMIGPRVNAAGR 289 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + ++ +LL++ D+ E +MLA ++D +N+ R+ + + + E+A V D V Sbjct: 290 LDCADPAVQLLLTTDAHEADMLAEQIDAMNRERQQLVNEITEEAIQLVEQHYRD---DRV 346 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +VV + W+ G++G++A+RL EKF RP+ +S +E G GS RSIEGFD+ + + Sbjct: 347 LVVAKEGWNVGVIGIVASRLVEKFYRPTIVLSIDQEKGIAKGSARSIEGFDL--FANLSN 404 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L + A + P+ ID + S V+ Sbjct: 405 CRDILPHFGGHPMAAGMTLSFHDVDELRRRLNEAAEQQLTDEHFIPITHIDLCCSISDVS 464 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + LI+ + P+G GNP P F + +L ++R + HL++ +++ +TL+AI F Sbjct: 465 LELIEQMNRLAPFGMGNPKPRVLFQHVQLDTLRKIGTDQNHLKLLL-AEEGKTLEAIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + R+ + G L +N W ++ QL + D + E F + Sbjct: 524 FGNIG----DEIAPNVRLSIVGELAINEWNNFRKPQLMIQDIAVNEWQLFDMR 572 >gi|295399344|ref|ZP_06809326.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus thermoglucosidasius C56-YS93] gi|294978810|gb|EFG54406.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus thermoglucosidasius C56-YS93] Length = 785 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 183/589 (31%), Positives = 301/589 (51%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E I + ++ I ++A +LV+R V + + A FL P ++ DP +L Sbjct: 7 RWDVKRPDENI--VKHLVEQLRIDPLIATLLVHRGVRTAEEANVFLYP-LKQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A RI +AI + E I+++GDYD DG +S +M+ L + YIP+R +GY Sbjct: 64 DGMERAVVRIQRAIQDGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN ++G LIITVD G + + A G+DVI+ DHH+V AY ++ Sbjct: 124 GPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPTLPEAYEII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLD+ A+ T+ D+V Sbjct: 184 HPKKPGSTYPFRELAGVGVAFKVAHALLGEVP-----------RYLLDVAAIGTIADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R+ GL+AL + I I + +G++I P +NA GR+GE+ Sbjct: 233 LTGENRVLVAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + RLL+++D +E + LA ++D LN+ R+ + + + E+A + Q + V+VV Sbjct: 293 DPAVRLLMTEDEEEAKRLAKEMDDLNRERQQLVAEIAEEAAQIIQEQFPPSENK-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A+RL E+F RP+ +S + E G GS RSI GFD+ S + I Sbjct: 352 KEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDM--FSSLSTCRDI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH MAAG+T+ + G L A +++ TP+ ID V + S + +A+ Sbjct: 410 LLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + LE P+G GN P+F N ++++R V +HL+ F +Q+ + ++ F Sbjct: 470 EQLEKFAPFGVGNAKPLFLMENVSVETMRRVGADQSHLKAVF-AQNGAAIDSVGFGFGYL 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + ++ V G L +N W ++ QL + D + E F + Sbjct: 529 ----RDEIAPDAKVSVVGELVINEWNHLRKPQLMIYDMAVHECQLFDIR 573 >gi|308070367|ref|YP_003871972.1| Single-stranded-DNA-specific exonuclease recJ [Paenibacillus polymyxa E681] gi|305859646|gb|ADM71434.1| Single-stranded-DNA-specific exonuclease recJ [Paenibacillus polymyxa E681] Length = 798 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 179/592 (30%), Positives = 299/592 (50%), Gaps = 26/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S +RW + + A +T++ I +++R+LVNR V+ A FL S+ + DP Sbjct: 4 SQYRW--KTPEANLEAAQLLTEELGISPLLSRLLVNRGVTTAGEANRFLYGSVDDVH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L +A RI QA+ E I+I+GDYD DG +S +LM++ + + ++YIP R Sbjct: 61 FLLLGMKEAVPRIRQALERGEHILIYGDYDADGVSSTSLMIQLMRFLKASYDIYIPHRSN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ +G L+ITVD G ++ + + YAT+ GIDVIV DHH+ + AY Sbjct: 121 EGYGLHNHALDWAHQQGVTLVITVDTGISAVEQIAYATSLGIDVIVTDHHEPPAVLPEAY 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 L+NP L GV + + + + ++ A+ TV D Sbjct: 181 TLINPKLPGCPYPFKGLAGVGVALKLAQALLGEVPE-----------EWFEIAAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311 ++PL G NR V KG+ R PG++AL+ + N+ + + P INA GR+ Sbjct: 230 LMPLHGENRTMVRKGIQSMRNSAFPGIRALLHVAGVDISTVTSVNIAFALAPRINASGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL ++ +E + LA LD+LN+ R+ + ++EQAE ++ ++ + + SVI Sbjct: 290 DHAGRAVSLLTTEKEEEADQLAHALDLLNRERQQVVERIVEQAEQQLASKLNGGKLPSVI 349 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G+ W+ G+VG++A++L +++ RP+ + + E G GS RSI DI Sbjct: 350 VLAGEGWNVGVVGIVASKLLDRYYRPTIILGIDAETGTCKGSARSIPALDIYSA--LTDS 407 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH AAG+T+ R N + ++A +I+ PV + D V V++ Sbjct: 408 HELMEHFGGHPSAAGMTLSRDNLELFEEQLNRYAGSILTPEDLIPVAEADMVCRMDEVSL 467 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 +++ LE P+G GNP+P F +L+ R + H+++ E Q+ L AIAFR Sbjct: 468 QVVEELELLQPFGMGNPSPRFVLQGLQLREARKMGREKNHVKLLLE-QNGLPLDAIAFRR 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L +FL Q + + G L +N W G + QL + D F + Sbjct: 527 GD--LADFLQQQT--EIDLLGELSINEWNGKRSLQLMMQDIRVQAPQIFDYR 574 >gi|305665887|ref|YP_003862174.1| single-stranded-DNA-specific exonuclease recJ [Maribacter sp. HTCC2170] gi|88710662|gb|EAR02894.1| single-stranded-DNA-specific exonuclease recJ [Maribacter sp. HTCC2170] Length = 562 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 169/578 (29%), Positives = 279/578 (48%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW E + ++ + +V +L+ R ++ D AK F P + L DP ++ Sbjct: 2 RWTLKPKPEQK-QIEELSSALKVDGLVGTLLIQRGITTYDQAKKFFRPELTDLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI +AI N E I+++GDYDVDG SVAL+ +L N YIPDR +GY Sbjct: 60 KDMDLAVARIEKAIANDENILVYGDYDVDGTTSVALVSSYLLQGYPNVATYIPDRYDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LI+ +DCG + D + YA ++GID I+ DHH+ + A A++ Sbjct: 120 GVSYKGIDFAEDNDFALIVALDCGVKAIDKVTYANDKGIDFIICDHHRPGDQLPDAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + NK DL+ LDLVA A D+VP Sbjct: 180 DPKREDCDYPYDELCGCGVGFKLIQALAS-----NKGETIDDLVMYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V + G KA+I ++ + +T ++ ++I P INA GR+ Sbjct: 235 MTGENRVLAYFGLKVINAEPRIGFKAIINQIK-KNELTITDVVFIIAPRINAAGRMKHGQ 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL+ ++ ++ E++A +++ N +RR ++ + +A ++ ++ VV Sbjct: 294 HAVNLLVEENLEQAEVIAKEIEQFNFDRRNLDQEITAEALVRIKEN--KEEERFTSVVYK 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 D WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E + Sbjct: 352 DSWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALQACSEH--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + F++ + + + TP +D ++ S + L + Sbjct: 409 QFGGHKYAAGLTLLPEQYEPFKAKFEQVVADTIEPHLLTPEINVDNSISLSDITPKLYRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVV--NLAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G GN PVF N K + V HL++ S ++ I F + Sbjct: 469 IRQFAPFGPGNMTPVFMAENLKDSGYAKGVGEGEKHLKLAVTQNGSRSIGGIGFNLGD-- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + K + N W GS R QL++ D Sbjct: 527 --KMAIVKNTKPFDAVFSIDENEWNGSVRLQLKLRDIK 562 >gi|157693166|ref|YP_001487628.1| recombination protein J [Bacillus pumilus SAFR-032] gi|157681924|gb|ABV63068.1| recombination protein J [Bacillus pumilus SAFR-032] Length = 774 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 181/593 (30%), Positives = 284/593 (47%), Gaps = 29/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 +S RW + ++++ I + A +LV R + + A+ FL D Sbjct: 3 LSKMRWEY--EHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L +A RI +AI E I+IFGDYD DG S ++++ L S + YIPDR Sbjct: 60 PFLLKGMKEAVERINKAIEEQESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN +GA L+ITVD G + + + A G+D+I+ DHH+ E A Sbjct: 120 KEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEIGLDLIITDHHEPSEELPEA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+V+P + L GV F V + L LLDL A+ T+ Sbjct: 180 LAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLP-----------TQLLDLAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 D+VPL NR KGLM R+ GLKAL++ + E +G+ I P +NA GR Sbjct: 229 DLVPLHDENRWLAKKGLMQLRQSNRLGLKALLKEAGATLEEANEETVGFQIAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+++D E E LA + LN+ R+ + S + E+A V DD S Sbjct: 289 IEQADPAVHLLMTEDKDEAEELARFVQELNKERQKIVSTITEEAIQMVEETGDDQ---SA 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L + F RP+ + +E+ + GS RSI GFD+ +S Sbjct: 346 IVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFHLSKC- 404 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L + ++A+ + P+ ++D V + Sbjct: 405 -RDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELT 463 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + I+ + P+G NP P + +L+ IR + H++M+ + +D + L + F Sbjct: 464 VEAIEEMGMLSPFGMQNPKPFIMIEDARLEEIRTIGANQNHIKMSLKDED-KLLDCVGFH 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G R+ V G + +N W K+ QL + DA E F + Sbjct: 523 QGQLK----EEVVTGSRISVIGEMSINEWNNRKKPQLMLKDARVDEWQLFDLR 571 >gi|110640034|ref|YP_680244.1| single-strand DNA specific exonuclease [Cytophaga hutchinsonii ATCC 33406] gi|110282715|gb|ABG60901.1| exonuclease RecJ [Cytophaga hutchinsonii ATCC 33406] Length = 574 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 160/577 (27%), Positives = 284/577 (49%), Gaps = 17/577 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW++ +A ++ + I ++ +LV RN+ + + AK+F PS+ L DP + Sbjct: 6 KRWITKTLPAQ-EKARSLAEALNINAYISAMLVQRNIETFEEAKNFFRPSLSQLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA R++QAI +E+I+I+GDYDVDG SV++ FL + N YIPDR +G Sbjct: 64 MRDMEKAVTRLMQAIAGNERILIYGDYDVDGTTSVSVFYGFLKNYYTNIEYYIPDRYKEG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + +E + A LI+++DCG + + + YA + GID I+ DHH +E A A+ Sbjct: 124 YGVSKAGIEYARDTNATLIVSLDCGIRAVEMVAYANSFGIDFIICDHHNPGNELPDAVAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + + L GV F +L + + L +DL+A++ D+V Sbjct: 184 LDPKQNNCSYPYKELSGCGVGFKLLQALCTRAG-----YSSELLFEQIDLLAISICSDIV 238 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL PG++A+++ + I + + IGP INA GRI + Sbjct: 239 PITGENRILTYFGLQKLNESPRPGIQAIVDVSGLKKAIDVNTVVFTIGPRINAAGRIDHA 298 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++++ + A ++ N RR + + +A + + + +S V+ Sbjct: 299 FAAVELLLAENKTDAANFAANINDHNLVRREFDETITGEALGMIQSNANAATASST-VLY 357 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+R E + RP+ ++ + +GK GS RS+ +D+ + + +L Sbjct: 358 KNDWHKGVIGIVASRCIEHYHRPTIILT-QSNGKVAGSARSVPDYDLYEAIDKC--SDLL 414 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGH AAGLT+E N F++ + P+ ID L + ++ + Sbjct: 415 IQFGGHKYAAGLTMEEKNIEAFRTKFEEVVSATIRKEQLIPMISIDLELPLNQIDSRFFN 474 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 ++ GP+G N P+F N R++ HL++ QDS T AI ++++ Sbjct: 475 IVRQMGPFGPQNMQPIFVSRNVMDDGTSRILKDKHLKLNIRQQDSVTYPAIGWQMHAF-- 532 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + L N + G K QL + D Sbjct: 533 --YDRIKNKEPFDICYSLEENEFNGKKTIQLMIRDIQ 567 >gi|302383023|ref|YP_003818846.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas subvibrioides ATCC 15264] gi|302193651|gb|ADL01223.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas subvibrioides ATCC 15264] Length = 605 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 222/589 (37%), Positives = 321/589 (54%), Gaps = 7/589 (1%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 FL V S+SG W + + RA Q + + +AR L R V + DFL P++ Sbjct: 14 FLDVARSLSGRAWRQRPAEASVIRAH--MQGLGLDEPLARALAARGVKPEQGADFLEPTL 71 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 + L PDP D D AA IV AI + E I +F DYDVDGA+S AL++R+ + + Sbjct: 72 KALFPDPSSFMDMDLAAEAIVSAIQSGESIHVFADYDVDGASSAALLVRWFRALGRDLPI 131 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 Y+PDR+ +GYGP+P ++ GA+L+ITVDCG+ + +A+ +A G+ V+VIDHH ++ Sbjct: 132 YVPDRLTEGYGPSPMAFDRLKASGAELVITVDCGAAANEAIAHACGIGLKVVVIDHHMMR 191 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243 E A+VNPNR D SGQG+L AAGVVF++L + R R+ D+ LD Sbjct: 192 EEPPRCLAVVNPNRPGDTSGQGNLAAAGVVFVLLAALNREARKRGLFVETPEPDIRQWLD 251 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIG 302 L AL +CDV L G NRA GL V NPGLKAL+ + G+++G Sbjct: 252 LAALGAICDVTGLTGFNRALTGLGLRVMSGWRNPGLKALLAVAGAEPGPAKSNHAGFILG 311 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG ++LG+RLL +DD E LA +LD LN RR +E + E A +V Sbjct: 312 PRINAGGRIGRADLGARLLSTDDPLEARALAEELDALNVARREVEREVTETATRRVEATG 371 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDI 421 ++V+VV G+ WHPG+VG++A RL+E++ +P I + G GSGRS G ++ Sbjct: 372 QHADGSAVVVVSGEDWHPGVVGIVAGRLRERWRKPVIVIGVDAVAHVGKGSGRSQPGMNL 431 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G+ + A EG+L+ GGGHAMAAGLT+ L DF ++D Sbjct: 432 GRAIQSAWREGLLLAGGGHAMAAGLTIRPDGIDALRDFLNATMAGEQADADALDWVEVDA 491 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 +++ A + AL + E P+G NP P+FA + + +N H++ D ++ Sbjct: 492 LIDPGAASRALFEGFERLAPFGPANPEPLFALSGVQSREPVQMNGGHVRCRLVGADGASV 551 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AIA+R P G L+ +G + V G L + W G K Q + D + Sbjct: 552 KAIAWRCADLPSGRALLAGQGG-LSVVGRLKADDWNGRKGVQFEIEDVA 599 >gi|159044818|ref|YP_001533612.1| single-stranded-DNA-specific exonuclease [Dinoroseobacter shibae DFL 12] gi|157912578|gb|ABV94011.1| single-stranded-DNA-specific exonuclease [Dinoroseobacter shibae DFL 12] Length = 585 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 247/595 (41%), Positives = 344/595 (57%), Gaps = 11/595 (1%) Query: 1 MNDQ-AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD 59 M D AFLGVE S++G RW+ L + A + Q +PD V R L R V+ + A+D Sbjct: 1 MTDGPAFLGVESSLTGRRWIGLSPDQD-RAAERLVQITGLPDAVCRTLARRGVAPEEAED 59 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FL P++R L+PDP L D ++AA R+ AI +E+I IF DYDVDG +S AL++ +L Sbjct: 60 FLAPTLRALLPDPRSLRDMERAAARVNAAIARNERIAIFADYDVDGGSSAALLIDWLRAQ 119 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 A +Y+PDRI +GYGPN ME + LII VDCG+ S+D + A G DV+++ Sbjct: 120 GRTATLYVPDRIDEGYGPNIPAMEALAD-AHDLIICVDCGTLSHDPVAAAQ--GTDVVIL 176 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 DHH + A+A+VNPNR D+ HLCAA VVFL+LV R R + DL+ Sbjct: 177 DHHLAEECLPAAHAVVNPNRQDEDGSLSHLCAAAVVFLLLVEANRQQRAAGQ--PGQDLM 234 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 +LLDLVALATV DV PL G+NRA+V +GL V R+ PGL AL + + ++ +LG+ Sbjct: 235 ALLDLVALATVADVAPLSGVNRAFVRQGLTVMGRRERPGLTALSDSAGLDRAPSSYHLGF 294 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG ++LG+RLL + D E LA +L+ LN RR +E+ + A + Sbjct: 295 VLGPRINAGGRIGAADLGARLLATRDPHEAAALAERLEKLNAERRDIEAQVRASALEQAE 354 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 T+ A + G+ WHPG+VG++A+RLKE RP+ I E +G GSGRS+ G Sbjct: 355 TRGL---NAPLAWAAGEGWHPGVVGIVASRLKETANRPAIVIGL-EGDEGKGSGRSVPGI 410 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G + EG+L+KGGGH MAAGLTV R + + + Sbjct: 411 DLGAAIQRLAHEGLLLKGGGHKMAAGLTVRRDLLEPAMARLSELLAAQGADRLGPKGLHV 470 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DGVL+ A+ LI +E AGP+GA P P FA P+ ++ + V +HL+ +F Sbjct: 471 DGVLSPRAITTELITRIEDAGPFGASAPAPRFALPSVTIRYAKPVGESHLRFSFAGPCGT 530 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + IAF + TP+G L QS H+ G L +N W G + QLR+ DA+ E Sbjct: 531 RMDGIAFGAFDTPIGPALSQSARGTFHLAGRLEINSWGGQHKAQLRLDDAAAAEA 585 >gi|67459155|ref|YP_246779.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia felis URRWXCal2] gi|67004688|gb|AAY61614.1| Single-stranded-DNA-specific exonuclease RecJ [Rickettsia felis URRWXCal2] Length = 587 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 222/587 (37%), Positives = 329/587 (56%), Gaps = 14/587 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+G W L E I + + I D++AR++ R +++ ++FL P I+ L+ Sbjct: 4 QASINGKIWQQKLINEDI--VTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNLL 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D KA R V+AI N++KI IF DYDVDGA S AL+ ++ ++Y+PD Sbjct: 62 PDPFHLLDMKKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNVFRDLNILCDIYVPD 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 RI +GYGP P M+K + G +L+ITVDCG+ +++AL+YA + +DVIVIDHH Sbjct: 122 RIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDLNLDVIVIDHHIATEILP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL---NFDLLSLLDLVA 246 A A+VNPNR+D+ S HL A GV FL I L++ N +L+ LDLVA Sbjct: 182 DAVAIVNPNRIDEKSECKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMKYLDLVA 241 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCD++ L GLNRA+V GL V +++ N G+K L + ++ +LG+++GP IN Sbjct: 242 LGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAELNEIPKCYHLGFILGPRIN 301 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+G+S+LG+ LL + S E LA +L+ N R+++E M+E+A LTQ Q Sbjct: 302 AGGRVGKSSLGANLLSTSCSNEASKLAEELEKHNNERKVIELLMIEEATEIALTQ----Q 357 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +S++ + + WHPG++G++A RLKEKF +P ++ + G G S RSI G D G + Sbjct: 358 DSSLLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVVALND-GIGKASCRSILGIDFGAEII 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A + +L+ GGGHAMAAG TV L +FF + L + D L + Sbjct: 417 NAKSKDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVN 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQ 542 VN L+ L + P+G GN P+F F + + +V H++ ++ L Sbjct: 477 GVNFPLMKELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLAPNKRGFGNKALS 536 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AIAF GT E L+ + K + G L N W+ + QL + D Sbjct: 537 AIAFNSVGTSFEEVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIRDI 583 >gi|239827849|ref|YP_002950473.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. WCH70] gi|239808142|gb|ACS25207.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. WCH70] Length = 785 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 299/589 (50%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E I + ++ + ++A++LV+R V +++ A FL P ++ DP +L Sbjct: 7 RWDVKRPDENI--VTHLVEQSHMDPLIAKLLVHRGVRTVEEANAFLYP-LKQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A RI +AI + E I+++GDYD DG +S +M+ L + YIP+R +GY Sbjct: 64 DGMERAIERIQRAIQHGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + +G LIITVD G + + A G+DVI+ DHH+V AY ++ Sbjct: 124 GPNENAFRWAKEQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPALPEAYEII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + L LD+VA+ T+ D+V Sbjct: 184 HPKKPGSTYPFRELAGVGVAFKVAHAL-----------LGDVPRHFLDVVAIGTIADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R GL+AL ++ I I + +G++I P +NA GR+GE+ Sbjct: 233 LTGENRLLVAQGLEQLRNTKRIGLRALCKQCGIEAKEINEQTVGFVIAPRMNAVGRLGEA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLL+++ +E + LA ++D LN+ R+ + + + E+A V Q + V+V+ Sbjct: 293 TPAVRLLMTEKEEEAQRLAKEMDDLNRERQQLVAKIAEEAAQIVNEQFPPSENK-VLVIA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A+RL E+F RP+ +S + E G GS RSI GFD+ S + I Sbjct: 352 KEGWNPGVIGIVASRLVEQFYRPTIVLSIDSEKGIAKGSARSIHGFDM--FSSLSTCRDI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A +++ A TP+ ID V + S + +++ Sbjct: 410 LPHFGGHPMAAGMTLSVDHIDELRQRLNALADDMLTADDFTPITPIDAVCSVSDLTLSVA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + LE P+G N P+F N +++IR + +HL+ F +Q+ + ++ F Sbjct: 470 EQLEKFAPFGVDNAKPLFLMENVSVETIRRIGADQSHLKAVF-AQNGAAIDSVGFGFGYL 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + ++ V G L VN W ++ QL + D + E + + Sbjct: 529 ----CDEIAPDAKVSVVGELMVNEWNNLRKPQLMICDVAVHECQLYDIR 573 >gi|58039949|ref|YP_191913.1| single-stranded-DNA-specific exonuclease RecJ [Gluconobacter oxydans 621H] gi|58002363|gb|AAW61257.1| Single-stranded-DNA-specific exonuclease RecJ [Gluconobacter oxydans 621H] Length = 599 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 222/600 (37%), Positives = 326/600 (54%), Gaps = 14/600 (2%) Query: 2 NDQAFLGVECSISGFRWVSLLG---QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK 58 + A LGV S RW+ + ALA+ Q+ IP+++AR+L R V+ A Sbjct: 5 DTGAVLGVTRSAGHRRWIWRDPRLAEADNRLALALAQQAGIPELLARILSARGVAPPDAS 64 Query: 59 DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118 FLNP +R MPDP L D D+AA R+ QA+ N E + +FGDYDVDGA AL+ L Sbjct: 65 SFLNPRLRDAMPDPSCLQDMDRAAERLAQAVRNREHVGLFGDYDVDGACGTALVCDTLRE 124 Query: 119 CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178 + +IPDR+ +GYGPN + +E +++GA L++ +DCG+ + D L T++ D+IV Sbjct: 125 LGCTVSTHIPDRLTEGYGPNTAALENLLSQGATLLVCIDCGTAAIDILNGLTDR-ADIIV 183 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--- 235 +DHH+ +P +VNPNRLD SG G +CA V FL +V R LR+ N + Sbjct: 184 LDHHKPDGAALPKGIVVNPNRLDCTSGLGSICATAVAFLTMVATIRHLRRCNWFDEDQVI 243 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 DLL LDL ALAT+CDV+PL GLNRA V++GL V R GL L + +A Sbjct: 244 PDLLKRLDLTALATICDVMPLTGLNRALVMQGLRVMSRGERLGLATLSSVAGVKEEASAM 303 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 G+ +GP INAGGRI +++LG +LL+SDD E LA +LD +N+ R+ +ES +L+ A Sbjct: 304 ACGFALGPRINAGGRIAQADLGLKLLLSDDVVEARALAEQLDRVNRQRQTVESTILDSAM 363 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 + Q +VI + G+ WHPG+VG++A RLKE++ RP+ + + G GS RS Sbjct: 364 EQAQQQL--DAGHAVIFLHGETWHPGVVGIVAGRLKERYNRPALVAALTD-GVIKGSARS 420 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + G D+G + A + G+L+ GGGHAMAAG ++ + + L Sbjct: 421 VPGLDLGTAIIAARQNGLLLSGGGHAMAAGFSLSADRADEFHSWLDSQLSGALT-LPKQD 479 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTF 533 K+DG++ + ++A+ D L P+G GN PV A N + + L++ Sbjct: 480 ALKLDGIMTLAGASVAVADQLARLEPFGPGNEEPVLAISNVRCVKSERIGKDGNTLRVIL 539 Query: 534 ESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +D T L+ + FR P L +HV G L W+ K + DA+P Sbjct: 540 QGEDGGTRLRGLVFRAADKPFAALLEDRSMPLVHVAGTLRAETWQERKNLSFFISDAAPA 599 >gi|146298353|ref|YP_001192944.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacterium johnsoniae UW101] gi|146152771|gb|ABQ03625.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacterium johnsoniae UW101] Length = 568 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 177/580 (30%), Positives = 288/580 (49%), Gaps = 24/580 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + ++ + Q + D VA +L+ R + + + AK+F PS+ L DP ++ Sbjct: 2 RWTLKP-KPSEDKIKHLAQALNVEDFVATLLIQRGIETFEDAKNFFRPSLEHLH-DPYLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI +AI N E IM+FGDYDVDG +V+L+ +L + YIPDR +GY Sbjct: 60 KDMDKAVARIERAIENQENIMVFGDYDVDGTTAVSLVSSYLKSHYPHIATYIPDRYDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + G LII +DCG S D + YA + ID IV DHH+ A A++ Sbjct: 120 GISYKGIDYADDNGISLIIALDCGIKSIDHIAYAKAKNIDFIVCDHHRPGEILPDAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + + N+ DL+ LDLVA A D+VP Sbjct: 180 DPKREDCSYPYDELCGCGVGFKLIQALGQ-----NRNETIEDLVPYLDLVATAIAADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V + PG+KAL+ + + ++ ++I P INA GRI N Sbjct: 235 ITGENRVLAYFGLKVINSEPRPGIKALVHQAK-KKVLDITDVVFIISPRINAAGRIKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL D ++ + A +++ N +R+ ++ + ++A ++L + ++ VV Sbjct: 294 HAVELLTEFDLEQAQQFASEIEQYNADRKDLDKKITKEAFQQILQN--NEEERFSTVVFQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E L Sbjct: 352 EDWHKGVIGIVASRLIETYYRPTLVFTKSGD-KYAASARSVKGFDVYNALDACSEH--LE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAG+T++ N+ D F+K + + TP +ID ++ S + LI + Sbjct: 409 QFGGHMYAAGMTLKAENYQLFKDAFEKCVQETIQPEMRTPEIEIDAEIDFSDITPKLIRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551 L+ P+G N PVF + K + + HL++ + + AI F Sbjct: 469 LKQFEPFGPQNMTPVFMTKDIKDTGYAKTLGAEEEHLRLFVKQSLGTDGIAAIGFG---- 524 Query: 552 PLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG+ L ++ + + + N W G+ QL + D Sbjct: 525 -LGKKLNIAQNQNPFQLAYTIAENEWNGNISTQLMLKDIR 563 >gi|327439551|dbj|BAK15916.1| single-stranded DNA-specific exonuclease [Solibacillus silvestris StLB046] Length = 773 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 180/592 (30%), Positives = 286/592 (48%), Gaps = 27/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72 S W ++ +++ I I A++L+ R + I+ AK L DP Sbjct: 4 SQKVWTI--TKQDEQLVKQFSEQLNISTIAAKILIARGCTLIEEAKPLLKID-ETQYHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ + A RI QA+ N EKI+++GDYD DG S +++ L + + IPDR + Sbjct: 61 YLMAGMEDAVMRIEQALDNGEKILVYGDYDADGITSTTVLLNALLDLGADVSFVIPDRFI 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN L +K +G LIITVD G + + ++ A G+DVI+ DHH+ + A Sbjct: 121 HGYGPNEELFKKAYEDGVNLIITVDNGISGIEQVKMARELGMDVIITDHHEAGNILPDAN 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 +++P + G L GV F + +Y L L + VA+ T+ D Sbjct: 181 VIIHPRVPEGHYPFGELAGVGVAFKLAHALYGELPD-----------HLFEYVAVGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VPL+G NR V +GL ++ NP +KA+ + I E +G+ GP +NA GR+ Sbjct: 230 LVPLVGENRYLVQRGLQALKQSPNPWVKAICDASGANKKDINEETVGFYFGPRLNAIGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G + G L+S+D + LA +L+ N R+ + + +A A + + ++ + V+ Sbjct: 290 GSAEPGVHFLMSEDPLQANTLATQLNDKNTERKKIVEDITNEAMAMI-EEDASLKDSLVL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+PG+VG++A+RL EK+ RP+ +S E G GS RSIEGF + A Sbjct: 349 VVAGEGWNPGVVGIVASRLVEKYYRPTIILSLNLEKGIAKGSARSIEGFHL--FNELAKN 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAG+T+ + L + A + +ID + S + + Sbjct: 407 RDILPHFGGHPMAAGMTLPIEHVASLRTRLNEQAKLCLTEEQLVQNMQIDVPIELSEITV 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 I+ L P+G P PVF + K++S+R + HL+M E TL AI F Sbjct: 467 EAIEELRQLAPFGTEFPKPVFGIQDVKVKSMRKIGSGENHLKMELEDPY-RTLDAIGFNK 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S G + + G L +N W+G+K+ Q + D S E + + Sbjct: 526 GFLH----DEISYGVALSLVGDLQINEWQGNKKPQFMIQDVSVNEWQLYDYR 573 >gi|124009844|ref|ZP_01694512.1| single-stranded-DNA-specific exonuclease RecJ [Microscilla marina ATCC 23134] gi|123984165|gb|EAY24526.1| single-stranded-DNA-specific exonuclease RecJ [Microscilla marina ATCC 23134] Length = 569 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 166/579 (28%), Positives = 286/579 (49%), Gaps = 19/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW+ + I + +A +LV R++ + D AKDF PS++ + DP + Sbjct: 3 KRWIFKET-PDPQLVNQLASSLEISESMATLLVQRDIKTFDAAKDFFRPSLKNHLHDPFL 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA R+ +AI + EK+MI+GDYDVDG SVAL+ FL + + YIPDR ++G Sbjct: 62 MQDMEKAVIRLEKAIEHKEKMMIYGDYDVDGTTSVALVYGFLQNYHSLLDYYIPDRYLEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ +G L+I +DCG S + + YA QG+D I+ DHH E A+A+ Sbjct: 122 YGISKISIDWAKEQGITLVIALDCGIKSVELMDYANEQGVDYIICDHHMPGQEIPRAHAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L GV F ++ D L LDL+ ++ CD+V Sbjct: 182 LDPKRKDCAYPFKELSGCGVGFKLMQAYCLRNNID-----LEKLYPFLDLLVISIACDIV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIG 312 P+IG NR GL + G+KALI+ + + N+ + +GP INA GRI Sbjct: 237 PIIGENRVMAFYGLRQLNQTQRTGIKALIDVAKFSDDTVLDISNVVFGLGPRINAAGRIQ 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL+S++ +E + +A ++ N RR ++S++ E+A + + + + ++++ V Sbjct: 297 HAKKAVMLLVSNNKKEADYVAELINKDNLQRRDLDSSITEEALSMI--EQNRLEKSKTTV 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WH G++G++A+R E + RP+ ++ GK GS RS+ GFD+ + + Sbjct: 355 LFKENWHKGVIGIVASRCIETYHRPTVILTQHN-GKATGSARSVPGFDLYEAIDAC--AD 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH AAGLT+ F+ + TP+ +ID + + Sbjct: 412 LLEQFGGHTHAAGLTLTLDKIEPFRQKFENIVAKQIDEEQLTPLIEIDAKIELKDITGKF 471 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGT 551 +L+ P+G N PVF + +++ H++ + S+ AI F + Sbjct: 472 YRILQQFAPFGPANMRPVFVSEHLYADYPKLLKEKHVKFRTRQEGSDAFFDAIGFGMPE- 530 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + G+R + ++ N +RG QL++ D Sbjct: 531 ---HYERIASGERFALCYNIDENRYRGQTSLQLKIKDIK 566 >gi|298291363|ref|YP_003693302.1| single-stranded-DNA-specific exonuclease RecJ [Starkeya novella DSM 506] gi|296927874|gb|ADH88683.1| single-stranded-DNA-specific exonuclease RecJ [Starkeya novella DSM 506] Length = 606 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 271/591 (45%), Positives = 367/591 (62%), Gaps = 4/591 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 +AFLGV S +G W L G LAI Q+ +P+I+ARVL R V ID + +L+ Sbjct: 12 PRAFLGVARSATGRFWRERLDLRGAQATLAIVQRTGVPEILARVLAGRGVGIDEVEAWLD 71 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P+++ L+PDP LTD R+ A+ EK+ +FGDYDVDGA S AL++ L ++ Sbjct: 72 PTVKRLLPDPDTLTDMGPCVARLADAVTTGEKVAVFGDYDVDGATSTALLVEVLRAGGLD 131 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 YIPDRI +GYGPN +E GA L++ VDCG+ S++ A G+DV+VIDHH Sbjct: 132 PAFYIPDRIFEGYGPNIPAIEGLAAGGASLLVPVDCGTMSFEPFARARELGLDVVVIDHH 191 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239 Q ALVNPNR+DDLSG GHLCA G+VF+V V + R L Q +LL Sbjct: 192 QAGETLPEVAALVNPNRVDDLSGLGHLCAVGLVFVVAVGLLRELEQRGWWNAARPKPNLL 251 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 + LDLVAL TV DVVPL+GLNRAYV KGL+ R++ PGL AL++ +S P A +LG+ Sbjct: 252 ADLDLVALGTVADVVPLLGLNRAYVTKGLLQLRKRERPGLTALMDAARLSGPPKAWHLGF 311 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG++ LG+RLL++ D E +A +LD LN R+ +E A++ QAEA+ Sbjct: 312 LLGPRINAGGRIGDAALGTRLLLTRDPIEAAAIAAELDRLNAERQQVERAIVAQAEAEAE 371 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + +VI+ G WHPG+VGL+AARLKEKFGRP+FAI+F + GS RSI G Sbjct: 372 AALGRAGEGAVILSSGQGWHPGVVGLVAARLKEKFGRPAFAIAFTGESG-AGSARSIPGV 430 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G+ V AVE GILVKGGGHAMAAGLTV R G L ++ V I Sbjct: 431 DVGRAVRAAVELGILVKGGGHAMAAGLTVAREKLGELRAHLEEVLAVSVEEARAVDETVI 490 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG L+A+ L++++E AGP+GAGNP P+FAFP H++ N +++ D Sbjct: 491 DGALSAAGATPDLVELIEKAGPFGAGNPQPIFAFPAHRIVYAEPGNSDQVRVRLRGSDGT 550 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L +AFR TPLG+ L+ +RG++ HV G L ++ W+G + LR+ D + Sbjct: 551 VLSGVAFRAANTPLGQALIAARGQQAHVAGMLELDSWQGRTQVNLRICDVA 601 >gi|260061414|ref|YP_003194494.1| putative single-stranded-DNA-specific exonuclease [Robiginitalea biformata HTCC2501] gi|88785546|gb|EAR16715.1| putative single-stranded-DNA-specific exonuclease [Robiginitalea biformata HTCC2501] Length = 571 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 179/578 (30%), Positives = 284/578 (49%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RWV + G A + + I ++A +LV R + + A+ F P + L DP+ + Sbjct: 6 RWVFKP-EPGREAASRLAGELGIDPLLAGLLVQRGIRDFESARRFFRPELSHLH-DPMQM 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D ++A R+ A+ E+I+++GDYDVDG SVALM +L S YIPDR +GY Sbjct: 64 QDMEQAVDRLEVALTRGERILVYGDYDVDGTTSVALMAAYLREYSDAVATYIPDRYREGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + +E + G LI+ +DCG + + +YA ++GID+I+ DHH+ A A++ Sbjct: 124 GLSRQGIEFADDNGMGLIVALDCGVKAIEQARYARSKGIDLIICDHHRPGETLPEAVAVL 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ ++ D +LL LDLVA A D+VP Sbjct: 184 DPKRDDCPYPYKELCGCGVGFKLIQALHERRGLD-----PAELLPYLDLVATAIGADIVP 238 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR V GL V PG++AL+ ++ + +L + + P INA GR+ Sbjct: 239 ITGENRVMVHYGLQVINGGARPGIRALLRGLDRKNY-QVSDLVFRVAPRINAAGRMQHGE 297 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 RLL D LA +++ LN RR E A+ ++A V ++ + + ++V V Sbjct: 298 DAVRLLTETDPARAGALADEIESLNSQRRETEQAITDEALEMVRSEGGEARMSTV--VFK 355 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS+ GFD+ + + + Sbjct: 356 EDWHKGVIGIVASRLIETYYRPTLVFTRSGD-KLAASARSVRGFDLYEALEAC--SDCIE 412 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+E F D F+K + TP +ID ++ S ++ L+ + Sbjct: 413 QFGGHTYAAGLTLEASRFQDFKDRFEKVVSERITEDSLTPEIQIDLKIHLSQIHPKLVRI 472 Query: 496 LESAGPYGAGNPNPVF-AFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTP 552 L GP+G GNP PVF A P R V HL++ S + I F + Sbjct: 473 LSQFGPFGPGNPAPVFVAGPLVDTGYARTVGEGGAHLKLAVTQDGSGPIGGIGFGLGDR- 531 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G+ + + N+W+G QL++ D Sbjct: 532 ---LDLIQGGREFYAVFSIEENHWQGRTSTQLKIRDIR 566 >gi|77919486|ref|YP_357301.1| single-stranded-DNA-specific exonuclease RecJ [Pelobacter carbinolicus DSM 2380] gi|77545569|gb|ABA89131.1| exonuclease RecJ [Pelobacter carbinolicus DSM 2380] Length = 574 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 194/578 (33%), Positives = 286/578 (49%), Gaps = 18/578 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W+ E ++ A+ Q + + + L+ R + S+D + FL + MPDP ++ Sbjct: 9 WLERDVSEQLDAV-ALQQCLGLSRLASEALLRRGLGSLDEVQAFLQAKLSS-MPDPCLMA 66 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA R+ QA+ N EKI + GDYDVDG + AL++ L + +IP R+ DGYG Sbjct: 67 DMDKAVERLAQAVCNREKIAVHGDYDVDGISGTALLVETLRAFGARVSYHIPLRLKDGYG 126 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + +E GA L +TVDCG +++ A G+D+I+ DHHQV A A+VN Sbjct: 127 VSAAALEDCATHGATLAVTVDCGVSAHAQAMRAAELGLDLIITDHHQVPETLPAALAIVN 186 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVV 254 P+R D +L GV FL+LV + + LR DL LDLVAL T+ D+V Sbjct: 187 PSRPDCGYPFKNLAGVGVAFLLLVALRKHLRDLGHWKTVCEPDLRYGLDLVALGTIADIV 246 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL GLNRA GL + G GL+AL + + +G+ + P INA GR+ + Sbjct: 247 PLKGLNRALTKAGLELLSHSGRAGLQALKKVAGVDKVTCGS-IGFRLAPRINAAGRLEDG 305 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +G LL+ + Q+ A LD +N +R+ +E LEQA+ + + IV+ Sbjct: 306 AVGVELLLQESVQDAMATAEMLDRVNSDRQAIEQQTLEQADERWRQRSSGA--THSIVLA 363 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 +RWHPG++G++A+RL EK+ RP+ I+ E G G GSGRSI+G + + +S L Sbjct: 364 DERWHPGVIGIVASRLVEKYHRPTILIALNE-GVGKGSGRSIKGLHLYQALSDCQAF--L 420 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGH AAGLT++ F+K A + DG ++ +++ ID Sbjct: 421 QGFGGHEYAAGLTIDAGRVEAFARDFEKLARQTLSPEDLRFRQFHDGEVSLEEIDLDSID 480 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 L P+G GNP PV+ LQS++ V HL+ Q L IAF + Sbjct: 481 ELSRLAPFGPGNPQPVYLARGVHLQSVQRVGDKHLRF-IACQGGHGLPCIAFGMAERQAQ 539 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 Q + N WR QL+V D PV Sbjct: 540 LAGPQ------DILFTPQRNEWRERVSVQLQVRDIRPV 571 >gi|284036115|ref|YP_003386045.1| single-stranded-DNA-specific exonuclease RecJ [Spirosoma linguale DSM 74] gi|283815408|gb|ADB37246.1| single-stranded-DNA-specific exonuclease RecJ [Spirosoma linguale DSM 74] Length = 584 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 176/589 (29%), Positives = 276/589 (46%), Gaps = 27/589 (4%) Query: 16 FRWVSLLGQEGINR---ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 RW++ + + +T + +A +LV R V + + A+ F P I L + Sbjct: 10 KRWITKPLPDSAEQRSAIETLTSSLGVSPFLAALLVQRGVQTYEEARTFFRPEINHLH-N 68 Query: 72 PLILTDCDKAARRIVQAI--YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 P + D DKA R+ A+ EKI+I+GDYDVDG SVAL+ FL + YIPD Sbjct: 69 PFEMKDMDKAIMRLQMAMLPERQEKILIYGDYDVDGTTSVALVYGFLKSYHPAIDYYIPD 128 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R +GYG + ++ G LII +DCG S D + A G+D I+ DHH+ + Sbjct: 129 RYKEGYGISKQGIQWAAENGFSLIIALDCGIKSIDRVAEAKALGVDFIICDHHRPGDQIP 188 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A A+++P R D L GV F +L D +L LDLVA++ Sbjct: 189 DAAAVLDPKRDDCAYPYKELSGCGVGFKLLQAFCLHKGID-----LNELYPSLDLVAVSI 243 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309 D+VPL G NR GL GLKALI+ S + NL + +GP INA G Sbjct: 244 ASDIVPLTGENRVLAHYGLKHLNASPRTGLKALIKIAGFSRELDITNLVFGLGPRINAAG 303 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 RI + +LL+++ +E + AM ++ N +RR +S+M EQA + +Q S Sbjct: 304 RIQHAKAAVQLLLAESEEEADEFAMAINKHNNSRREFDSSMTEQALEMIRGNESLLQAKS 363 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+ WH G++G++A+R E F RP+ ++ + + K GS RS+ GFD+ + + Sbjct: 364 T-VLFDASWHKGVIGIVASRCIEHFHRPTIILT-QSNDKAAGSARSVPGFDVYEAIEEC- 420 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +L + GGH AAG+T+ N F++ + + TP+ ID L+ S ++ Sbjct: 421 -ADLLEQFGGHTFAAGMTMSVDNIDAFRKKFEEVVASRIKEEHLTPLIDIDLPLDFSEIS 479 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLAHLQMTFESQD------SETLQ 542 L ++ GP+G N P F + + ++ HL++ D +T Sbjct: 480 DKLYRIVRQMGPFGPHNLQPTFMTEDVYLVSEPIIMKEKHLKINVRQGDTTARRSGQTFT 539 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 AI F + + S GK + + N++ G+ QL + D Sbjct: 540 AIGFGMAHI----ADLLSPGKPFSICYQVDQNHFNGNVSLQLMLKDIKV 584 >gi|189500724|ref|YP_001960194.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium phaeobacteroides BS1] gi|189496165|gb|ACE04713.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium phaeobacteroides BS1] Length = 568 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 171/578 (29%), Positives = 277/578 (47%), Gaps = 19/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +RW L E A A++++ + +AR L NR ++ + AK+F PS+ L P P + Sbjct: 4 YRWNILATDE--TAAAALSREINVSMPLARALSNRGIAGFEEAKEFFRPSLEQL-PSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D KA R+ A+ EKI+I+GDYDVDG A AL+ FL + YI DR +G Sbjct: 61 FRDMQKAVARVRTAVAEKEKILIYGDYDVDGTAGTALLCLFLQSLGADVFYYINDRFSEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + S + + L+ITVDCG ++ ++ +GIDVIV DHH+ PA+A+ Sbjct: 121 YGLSESGVSHACEQKTSLVITVDCGISAGREIEQLRKEGIDVIVCDHHEPGEL-PPAFAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV ++ + L LD+VA+AT D+V Sbjct: 180 LNPKVPGCGYPFRELCGCGVALKLVHALSESLG-----SAEEAWQQYLDIVAVATSADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 PL NR Y+ KG+ + ++ G++ ++ ++I + ++ + I P INA GR+ Sbjct: 235 PLEKENRVYMHKGMDLLQKSPRAGIQEMLTLMDIEPKALGTGHIAFGIAPRINAAGRMQT 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LI+ E ++ A +LD LN+ RR ++S M + A+A V S IV+ Sbjct: 295 ARTAVEWLIAGSRDEAKVHAEELDRLNRERREIDSGMFKSADAMVDGYFASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL +++ P+ + + G GS RS++G +I +++ Sbjct: 353 YNEAWHLGVLGIVASRLLDQYYLPTVIMGGSD-GLVKGSVRSVQGLNIYEVLQQCERF-- 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAG+T++ N F + +ID L V + Sbjct: 410 LENFGGHDAAAGITLKPENIAGFRRKFDTICSEKLTMEHRQKELQIDSSLLPGEVTGRFL 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 D+L GP+G GN P+F N +L R++ H++ + L IAF Sbjct: 470 DVLRQFGPFGQGNREPLFFSANMRLSGLPRLLKGKHVKFAVKDVSGRILDVIAFGRED-- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L + + + L N W G K QL++ D + Sbjct: 528 IYRELERGSRRMFSMVYALDENEWNGRKSMQLKLKDMA 565 >gi|322419800|ref|YP_004199023.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M18] gi|320126187|gb|ADW13747.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M18] Length = 572 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 180/581 (30%), Positives = 281/581 (48%), Gaps = 20/581 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPD 71 I+ W + LA + +P ++AR+L NR VS A+ +LNP + L D Sbjct: 4 ITHRCWQARSADADTVAGLA---RCGVPPLLARLLANRGVSGPADAEAYLNPVLSGLH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P++L A R+++A+ E++ + GDYDVDG S AL++ F ++ YIP R+ Sbjct: 60 PMLLKGMAPAVDRLLKALSQGERVCVHGDYDVDGVTSCALLIGFFRKIGLDCFHYIPKRL 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG + + GA +++TVDCG T+ + GID+IV DHH E A Sbjct: 120 TEGYGLSEQGVTAAARGGAGVLVTVDCGITAVAEARLCQEAGIDLIVTDHHTPADELPDA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALAT 249 A++NP + L GV F +++ + LR D DL LDLVAL T Sbjct: 180 LAIINPLQPSCPFPFKALAGVGVAFHLVIALRARLRADGHFARGGEPDLKEYLDLVALGT 239 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309 + DVVPL+G+NR V GL PG++AL + IS + +G+ + P INA G Sbjct: 240 IADVVPLLGVNRVLVSCGLKQLSAGCRPGVEALKQVAGISGEVGCGAVGFRLAPRINAAG 299 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ +G LL+ D +A +LD N R+ +E A E+A + + + Sbjct: 300 RLEDAAVGLELLLCKDPVRARDIATELDEANAERQSLERATFEEARSML--EQGACSGRK 357 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 IV+ + WHPG++G++A+R+ E F RP + E G G GSGRSI F + + Sbjct: 358 SIVLGSELWHPGVIGIVASRIVELFHRPVILFA-FEGGTGRGSGRSISRFHLLDAIKGC- 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 L++ GGH+ AAGL++ R R F++ A + A P D L ++ Sbjct: 416 -ADHLLRFGGHSHAAGLSIARDELERFALRFEEAAQQTLDAEALVPTLAYDLELAPCDID 474 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 L+ +E P+G GNP P+F ++ RV+ H+++ Q + AIAF + Sbjct: 475 QDLVQEIERMKPFGMGNPEPLFVLKGAVVEESRVLKGGHVKLRV-GQGGISFDAIAFGLA 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + R+ + +N W G QL V D Sbjct: 534 EKGIPK-------GRVDLLFSPGINVWNGRSSLQLTVKDLR 567 >gi|163794637|ref|ZP_02188607.1| Single-stranded DNA-specific exonuclease [alpha proteobacterium BAL199] gi|159179910|gb|EDP64435.1| Single-stranded DNA-specific exonuclease [alpha proteobacterium BAL199] Length = 592 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 243/597 (40%), Positives = 342/597 (57%), Gaps = 9/597 (1%) Query: 2 NDQAFLGVECSISGFRWVSL--LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD 59 LGVE S++G RW++ G E LAI Q+H +P+IV R++ R + +D + Sbjct: 1 MTTPILGVERSVTGKRWIARGGAGVEIERLGLAIAQRHGVPEIVGRLIAQRGIELDGVER 60 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FL P+++ +PDP +L D D AA R+ A+ + I +F DYDVDGA S ALM R+L Sbjct: 61 FLEPTLKAELPDPSVLKDMDAAAGRLSDAVQGGQPIGLFADYDVDGATSAALMTRYLRAV 120 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 + +++PDRI +GYGPN +E +GA +++ +DCG + + L A GID++V+ Sbjct: 121 GATSLLHVPDRIDEGYGPNLPAIEGLAGQGAGVVVCLDCGILAVETLGEARAAGIDMMVV 180 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFD 237 DHH E A A+VNPNRLD+ G G L A GV FLVLV + R LR+ D Sbjct: 181 DHHLAGPELPSAVAVVNPNRLDEPGGYGQLAACGVTFLVLVALNRELRRRGWFKQRPEPD 240 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 L LLDLVAL TVCDVVPL GLNRA+V +G+ V +GNPGL AL + + +L Sbjct: 241 LRVLLDLVALGTVCDVVPLAGLNRAFVAQGIRVMAGRGNPGLAALGDIAKLDRRPDPYHL 300 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+++GP INAGGR+G ++LG+RLL +DD+ E LA +LD N RR +E+ Sbjct: 301 GFVLGPRINAGGRVGRADLGARLLATDDAAEAATLAAELDRYNGERRTIEAE----VLEA 356 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 + Q + + +VV G+ WHPG+VG++A+RLK++F RP+ I EDG G GSGRS+ Sbjct: 357 AIAQAEAQADGAALVVVGEGWHPGVVGIVASRLKDRFHRPACVIG-VEDGIGKGSGRSVA 415 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 G +G + A + G+L+KGGGHAMAAG TV F + + T Sbjct: 416 GVQLGAAIIAAQQAGVLIKGGGHAMAAGFTVAADRVEAFKAFLCERVAAELADGDRTATL 475 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 +D L S L+ + GP+G GN P FAFP ++ VV H++ T D Sbjct: 476 SVDAALAPSGATGDLVRTVGRIGPFGTGNAEPRFAFPAVRVVGAGVVGENHVRCTLTGSD 535 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 ++AIAFR LG+ L+++ HV GHL + +RG + QL V DA+P G Sbjct: 536 GARVKAIAFRALDGDLGQSLLKAGSTPFHVVGHLRADDFRGGDQVQLIVDDAAPATG 592 >gi|163754680|ref|ZP_02161802.1| single-strand DNA specific exonuclease [Kordia algicida OT-1] gi|161325621|gb|EDP96948.1| single-strand DNA specific exonuclease [Kordia algicida OT-1] Length = 562 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 170/578 (29%), Positives = 277/578 (47%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + + + + +IVA +L+ R + + + AK+F PSI + DP ++ Sbjct: 2 RWTLKPKPE-TAKIQHLQEVLQVDEIVATLLLQRGIETFEEAKNFFRPSIEQIH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI +AI N E IM++GDYDVDG SVAL+ +L YIPDR +GY Sbjct: 60 KDMDVAVARIDKAIENGENIMVYGDYDVDGTTSVALVSSYLKTIYPQIATYIPDRYEEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LIIT+DCG + D + YAT +GID+++ DHH+ +E A A++ Sbjct: 120 GLSFQGIDYASDNDISLIITLDCGIKAIDKVAYATEKGIDIVICDHHRPGNELPKAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + + DL LDLVA A D+VP Sbjct: 180 DPKRDDCAYPYDELCGCGVGFKLIQALASKRGK-----TVTDLFPYLDLVATAIAADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L G NR G+ V + G+KA+I ++ T ++ +++ P INA GRI + Sbjct: 235 LTGENRTLAYFGMKVINKSPRAGIKAIISQLKKKE-FTITDVVFVVAPRINAAGRISQGL 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL ++ + + A ++ N RR ++ + ++A ++ + + Q+ VV Sbjct: 294 HAVELLTENNLEVAKQYAASIEKYNSERRTLDQEITKEAFQQI--EKLEEQERFTTVVYD 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E + Sbjct: 352 ENWHKGVIGIVASRLIETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEQCKEH--IT 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT++ N+ D F++ N + + TP ID + + + Sbjct: 409 QFGGHKYAAGLTLKEENYQAFKDAFEEVVKNTIDKNLLTPEILIDKEITLKEITPKFYRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQS-IRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G N +P+F K + V HL++ + S + I F + Sbjct: 469 LKQFAPFGPQNMSPIFMSTQLKDTGFAKCVGAEKDHLKLCAVQRKSPRINGIGFNLGD-- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + K + N W G QLR+ D Sbjct: 527 --KLSKVQDKKTFDAVYSIDENTWEGKTTLQLRLRDIR 562 >gi|227537505|ref|ZP_03967554.1| single-strand DNA specific exonuclease [Sphingobacterium spiritivorum ATCC 33300] gi|227242642|gb|EEI92657.1| single-strand DNA specific exonuclease [Sphingobacterium spiritivorum ATCC 33300] Length = 566 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 167/578 (28%), Positives = 274/578 (47%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RWV E N+ + ++ + I +++ +L+ R + + D A+ F PS+ L DP + Sbjct: 3 KRWVLKSKSEH-NKVIKLSDELGISTVLSELLIAREIETFDQARTFFRPSLEELH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A RI +AI N+EKI+I+GDYDVDG +VA++ F YIPDR +G Sbjct: 61 MKDMDIAISRIEKAIGNNEKILIYGDYDVDGTTAVAVVYNFFREFHSRIEFYIPDRYAEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA + +D I+ DHH A A+ Sbjct: 121 YGISMQGVDYAAENGFSLIIALDCGIKANDKIDYANARNVDFIIGDHHLPGDVLPNAIAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L G+ F ++ + D LDLVA++ D+V Sbjct: 181 LDPKREDCPYPYKELSGCGIGFKIIQAFIQKNGMD-----IQQCYQFLDLVAVSIASDIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR GL GL+ALI N + T ++ + IGP INA GRI Sbjct: 236 PITGENRILTHFGLQKLNTNPCCGLQALINLSSNKTGTFTVNDIVFQIGPRINAAGRIDH 295 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + +LLIS QE + + +D N R+ + + E+A A + + ++++ V+ Sbjct: 296 AKDAVKLLISKSLQEAKDFSESIDDQNNVRKDFDLRITEEALALI-DESENLKARKSTVL 354 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK+ RP+ ++ G GS RS+ GFD+ + +S + Sbjct: 355 FKSDWHKGVIGIVASRLTEKYYRPTIILTQTN-GHVAGSARSVIGFDLYEALSEC--SDL 411 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT++ N F+ + ++ + I+ + + + Sbjct: 412 LDQFGGHKYAAGLTMKLENVTSFQQKFEDVVNTLIKPEMLQQEVLIELTIPLTEITSRFF 471 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +L+ P+G N P+F + + +V H++MT +DS + I F + Sbjct: 472 KILKQFEPFGPQNDAPIFLTKKVVVIGNAYLVGTNHIKMTIRQEDSAAFECIGFGLAE-- 529 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + GK + + N WRG K QL + Sbjct: 530 --HIAHINSGKPFDICYVIEENNWRGKKNLQLNIKAIR 565 >gi|222056528|ref|YP_002538890.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. FRC-32] gi|221565817|gb|ACM21789.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. FRC-32] Length = 574 Score = 428 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 182/578 (31%), Positives = 279/578 (48%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74 RW + + ++AR+L+NR A F S+ L DP + Sbjct: 7 KRWELRKSEPDD--VERLVSAGVATPLLARLLLNRVPCDCKAAASFFTSSLAELH-DPYM 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + A R+++A EKI I GDYDVDG SV L++ F ++A IPDR+VDG Sbjct: 64 LLGMESAVERLLRAAVGKEKICIHGDYDVDGITSVVLLLTFFQTIGIDACYIIPDRLVDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++K +++TVDCG T+ + GID+I+ DHH A A+ Sbjct: 124 YGLSADAVDKAARLKTDVMVTVDCGITALAEAKLCAEAGIDLIITDHHTPGEALPDACAV 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252 +NPN+ L GV F +++ + LR + +L LDLVAL T+ D Sbjct: 184 INPNQKGCNYPFKALAGVGVAFNLVIALRSRLRAEGFFSGRAEPNLREYLDLVALGTIAD 243 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 VVPLI NR GLM + PG++AL I+ + +G+ + P +NA GR+ Sbjct: 244 VVPLIDQNRILAKYGLMELSQSHRPGIQALKRVAGITGDVGCGAVGFRLAPRLNAAGRLE 303 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + + LL+ D + E LA LD N R+ +E +L A V + IV Sbjct: 304 NAAMAVELLLCKDLKSAEPLAAALDASNAERQAVEREILNDALQMVRDDA-AFKGRKSIV 362 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WH G++G++A+RL + + RP+ I+ ++ G G GSGRSI GF + + ++ E Sbjct: 363 LASEEWHSGVIGIVASRLVDLYHRPTILIALKD-GNGKGSGRSIAGFHLHEALTACAEH- 420 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LVK GGH AAGL + + F + A ++ PV ID L A + + L Sbjct: 421 -LVKFGGHKHAAGLAIAEETLQAFVERFNEIADGLLTPEDLIPVLLIDAELKAEDLTLDL 479 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 + LE P+G GNP PVF + ++ R+V HL++ + + ++ +AIAF + G Sbjct: 480 VSELERMKPFGMGNPEPVFLLQDAEVLESRIVKDTHLKLRLQVE-AKKFEAIAFSMAGR- 537 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S G+R+ + +N W G QL V D Sbjct: 538 ------VSVGERIDLAFSPAINNWNGRSSLQLTVKDLR 569 >gi|312888553|ref|ZP_07748122.1| exonuclease RecJ [Mucilaginibacter paludis DSM 18603] gi|311298867|gb|EFQ75967.1| exonuclease RecJ [Mucilaginibacter paludis DSM 18603] Length = 572 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 172/582 (29%), Positives = 280/582 (48%), Gaps = 19/582 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW + G + ++ + I +++ +L++R +S + A+ F P I L DP + Sbjct: 3 KRWSIK-RKPGEAEIIKLSAELNIDPVLSTLLLHRQISNLEQARYFFRPDINHLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA RI QA EKIMI+GDYDVDG SVAL+ F + N + YIPDR +G Sbjct: 61 MKDMEKAILRIEQAFAAGEKIMIYGDYDVDGTTSVALVYSFFKNYYPNLDYYIPDRYKEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG S D + YA GID I+ DHH A A+ Sbjct: 121 YGISTQGIDFAHQHGISLIIALDCGIKSVDKIAYANTLGIDFIICDHHTPGEIIPDATAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P RLD L G+ F ++ + L+S L+LVA++ CD+V Sbjct: 181 LDPKRLDCEYPYKELSGCGIGFKLIQAYAQK-----NNIPFEQLMSYLELVAISIACDIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 + G NR GL+ G+K L+ + T ++ + IGP INA GRI ++ Sbjct: 236 HITGENRVLAHYGLIKINSNPCIGVKTLMLAAGRTENYTVSDIVFTIGPRINAAGRIDDA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LLI+ + +++ N R+ + ++ + A + + + + + S VV Sbjct: 296 KHAVELLIACTDEVATAKGSIINLKNIERKEHDLSITDAALSMIDSDPVMVARKST-VVF 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G++G++A+RL EK+ RP+ ++ + +G GS RS+ GFD+ + +L Sbjct: 355 NADWHKGVIGIVASRLTEKYYRPTIVLT-KSNGHVAGSARSVYGFDLYEA--LCGCSDLL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGH AAGLT+ N F++ + + + +ID L ++ Sbjct: 412 IQFGGHKYAAGLTMAPENVEAFSQRFEEVVNATITDEMLVQEIRIDAELKFKQIDAKFFR 471 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 +L GP+G N +PVF N + + +V H++MT DS + IAF + Sbjct: 472 ILSQFGPFGPENMSPVFLTKNVYVSGNATLVGANHIKMTVIQNDSASFDCIAFNM----- 526 Query: 554 GEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 GE+L + S+G + + N WR + QL + E Sbjct: 527 GEYLPKISKGIPFDICYTIEENVWRERRSIQLNIKGIKTYEA 568 >gi|300770902|ref|ZP_07080779.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium spiritivorum ATCC 33861] gi|300762175|gb|EFK58994.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium spiritivorum ATCC 33861] Length = 573 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 167/578 (28%), Positives = 274/578 (47%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RWV E N+ + ++ + I +++ +L+ R + + D A+ F PS+ L DP + Sbjct: 10 KRWVLKSKSEH-NKVIKLSDELGISTVLSELLIAREIETFDQARTFFRPSLEALH-DPFL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A RI +AI N+EKI+I+GDYDVDG +VA++ F YIPDR +G Sbjct: 68 MKDMDIAISRIEKAIGNNEKILIYGDYDVDGTTAVAVVYNFFREFHSRIEFYIPDRYAEG 127 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA + +D I+ DHH A A+ Sbjct: 128 YGISMQGVDYAAENGFSLIIALDCGIKANDKIDYANARNVDFIIGDHHLPGDVLPNAVAV 187 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L G+ F ++ + D LDLVA++ D+V Sbjct: 188 LDPKREDCPYPYKELSGCGIGFKIIQAFIQKNGMD-----IQQCYQFLDLVAVSIASDIV 242 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR GL GL+ALI N + T ++ + IGP INA GRI Sbjct: 243 PITGENRILTHFGLQKLNTNPCCGLQALINLSSNKTGTFTVNDIVFQIGPRINAAGRIDH 302 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + +LLIS QE + + +D N R+ + + E+A A + + ++++ V+ Sbjct: 303 AKDAVKLLISKSLQEAKDFSESIDDQNNVRKDFDLRITEEALALI-DESENLKARKSTVL 361 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK+ RP+ ++ G GS RS+ GFD+ + +S + Sbjct: 362 FKSDWHKGVIGIVASRLTEKYYRPTIILTQTN-GHVAGSARSVIGFDLYEALSEC--SDL 418 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT++ N F+ + ++ + I+ + + + Sbjct: 419 LDQFGGHKYAAGLTMKLENVTSFQQKFEDVVNTLIKPEMLQQEVLIELTIPLTEITSRFF 478 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +L+ P+G N P+F + + +V H++MT +DS + I F + Sbjct: 479 KILKQFEPFGPQNDAPIFLTKKVVVIGNAYLVGTNHIKMTIRQEDSAAFECIGFGLAE-- 536 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + GK + + N WRG K QL + Sbjct: 537 --HIAHINSGKPFDICYVIEENNWRGKKNLQLNIKAIR 572 >gi|326798144|ref|YP_004315963.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium sp. 21] gi|326548908|gb|ADZ77293.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobacterium sp. 21] Length = 566 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 168/578 (29%), Positives = 283/578 (48%), Gaps = 19/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RWV + ++++ I ++AR+LV R V + A+ F PS+ L +P + Sbjct: 3 KRWVERNT-VDTDVVTSLSKALNIHKVLARLLVQRGVFDFEQARKFFRPSLDDLH-NPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A RRI QAI E I+++GDYDVDG +V+++ FL + YIPDR +G Sbjct: 61 MKDMDLAIRRIEQAIGMKENILVYGDYDVDGTTAVSVLYSFLKRFYNHIGYYIPDRYKEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ LII +DCG S D ++YA +GID I+ DHH +E A A+ Sbjct: 121 YGISFQGIDYAAENNYSLIIALDCGIKSVDKIEYAAQKGIDFIIGDHHTPGNELPKATAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L G+ F ++ + + + ++ LDLVA++ D+V Sbjct: 181 LDPKRKDCNYPYKELSGCGIAFKIIHAFAKTNQLEE-----AEVFQYLDLVAVSIASDIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL + GL+AL++ + + ++ + IGP INA GRI + Sbjct: 236 PITGENRVLAYYGLKKLNNNPSFGLRALVDLSTKAGEMNLTDVIFQIGPRINAAGRIDHA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +LLIS +E + +DV N R+ ++ + +A +++ + + + + VV Sbjct: 296 KDAVKLLISKSLEEAKNCCGLIDVQNMQRKDFDARITAEAL-EIIQKSETLIKRKTTVVY 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+RL EK+ RP+ ++ + +G GS RS+ GFD+ + +S +L Sbjct: 355 QEDWHKGVIGIVASRLTEKYYRPTIVLT-KSNGHVAGSARSVAGFDLYEALSEC--SDLL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT++ N L F+ + + P ID ++ + + Sbjct: 412 EQFGGHKYAAGLTMKAENVPALQSKFEAVVAQSIAPELLEPEISIDAKIHLADITPKFFR 471 Query: 495 MLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 +L+ P+G N PVF N + ++V HL+M + + I F L Sbjct: 472 VLKQFAPFGPENNAPVFIAKNVYSVGEAQLVGANHLKMYITQEGAPAFDCIGFG-----L 526 Query: 554 GEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 GE++ ++G + N WR K QL + Sbjct: 527 GEYITHINKGIPFTACFSIEENVWRDKKNIQLNLKGIR 564 >gi|220920253|ref|YP_002495554.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium nodulans ORS 2060] gi|219944859|gb|ACL55251.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium nodulans ORS 2060] Length = 597 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 274/589 (46%), Positives = 364/589 (61%), Gaps = 3/589 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + L V S+ G W + G A I Q H +P+++ARVL R V+ FL Sbjct: 8 PRPLLDVHRSVLGRPWRDRCAEAGPQAAAVTIAQSHGLPEVLARVLAGRGVAPGEVPGFL 67 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP IL D + AA R+ A+ EK+ IFGDYDVDGAAS AL+ L V Sbjct: 68 EPRLRDLMPDPSILVDMEAAADRLAHAVLRREKVAIFGDYDVDGAASAALLAGTLRDLGV 127 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++TVDCG+ + L A G+DV+V+DH Sbjct: 128 PFRLHIPDRITEGYGPNGEAIRMLAGEGASLLVTVDCGTAGHGPLAEAARLGLDVLVLDH 187 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241 H PA A+VNPNRLDDLSG GHLCAAGVVFL LV + R LR+D DL++ Sbjct: 188 HGAPETLPPARAVVNPNRLDDLSGLGHLCAAGVVFLTLVALKRRLRRDGV--EVPDLMAG 245 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVALATV DVVPL+GLNRA+V +GL V R +G GL AL++ ++ P A +LG+++ Sbjct: 246 LDLVALATVADVVPLLGLNRAFVRQGLAVMRGRGRRGLAALLDAAGLAEPPQAWHLGFLV 305 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LG+RLL+ +D E +A +LD LN+ R+ +E+A + +AEA + Sbjct: 306 GPRINAGGRIGDATLGARLLLCEDPIEAAGIAAQLDQLNRERQAIEAAAVAEAEALAALR 365 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + VIV WHPG+VGL+AARLKE+FGRP+FA + EDG GSGRSI G D+ Sbjct: 366 LERDPDQPVIVAGSPDWHPGVVGLIAARLKERFGRPAFAFALREDGTATGSGRSIIGADL 425 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G+ V AVE G+ KGGGHAMAAG+T+ V+ R D + V +DG Sbjct: 426 GRAVRRAVEAGLAAKGGGHAMAAGVTLAAVDLDRFRDGLSQELAAAVGDARAAQALLVDG 485 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 VL+A V L+ +E AGP+G G P PVFA H++ R+V H++ +D T+ Sbjct: 486 VLSAGGVQPDLVAAVERAGPFGQGAPEPVFALARHRIADARIVGTGHVKAQLRGRDGVTV 545 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AIAFR PLG+ L++S G+ +H G L + WRG +R QLR+ DA+ Sbjct: 546 GAIAFRAAEGPLGQLLLRSIGRDIHAAGTLSRDRWRGGERVQLRLCDAA 594 >gi|288802718|ref|ZP_06408156.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella melaninogenica D18] gi|288334868|gb|EFC73305.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella melaninogenica D18] Length = 574 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 162/585 (27%), Positives = 283/585 (48%), Gaps = 22/585 (3%) Query: 16 FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +N A + +K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYTPPADTQVNAAKDLGEKLGISPILASLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ + E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA QGID I+ DHH PA A Sbjct: 122 GYGVSKKGIDFAKETGVKLIIILDCGIKAIEEITYAKEQGIDFIICDHHVPDEVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD +LC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDSYPFKNLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLKA+++ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILTFHGLKQLNQNPSLGLKAIVDICGLNSRELSMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ + A +D N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKKSVDLLVEREYSLALDQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ ++ GS RS+ GFD+ + Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT++ + FQ + + + ID V++ + L Sbjct: 413 LLLNFGGHTYAAGLTMKWADVKEFRKRFQAYVEEHIEPEQREAILDIDAVIDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GNP P+F + + +VV H+++ + + + IAF Sbjct: 473 HTDLKRFAPFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTE 572 >gi|311031522|ref|ZP_07709612.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. m3-13] Length = 781 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 182/593 (30%), Positives = 298/593 (50%), Gaps = 27/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW + + + I ++A +LVNR D AK+FL + + D Sbjct: 3 ASKSRWNV--SESNKELVDQLAESLDIAPLIASLLVNRGFDTIDAAKEFLYTNDQEFH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P ++ D DK R+ QAI EKI++FGDYD DG +S +M+ L + YIP+R Sbjct: 60 PFLMEDMDKLVERVNQAIAKEEKILVFGDYDADGVSSTTVMVTALQEVGALVDFYIPNRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN + ++ G +IITVD G ++ + A G+D+I+ DHH+ E A Sbjct: 120 TEGYGPNENAFKQAKENGYSVIITVDTGISALYEAKVAKELGLDLIITDHHEPGPELPDA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P + L GV + V + + LLD+ A+ T+ Sbjct: 180 YAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPE-----------HLLDVAAIGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+VPL+G NR KG+ ++ GLKAL+++ + +T E +G+ IGP INA GR Sbjct: 229 DLVPLVGENRLLASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + ++ LL+++D +E +MLA +++ N+ R+ + + + E+A +V + + Sbjct: 289 LDNADPAVHLLMTNDQEEAKMLAEEMESYNKERQQIVTQITEEAIQQV-EEKYPPEDNGF 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429 I+VEG+ W+ G++G++A+RL ++F RP+ +S E+ G GS RSI GFD+ + +S Sbjct: 348 IIVEGNNWNAGVIGIVASRLVDRFYRPTIVLSLDEDKGLAKGSARSIVGFDLFENLSEC- 406 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T++ + L + A I+ TP+ ++D V Sbjct: 407 -RDILPHFGGHPMAAGMTLKIEDVNELRQRMNQKALEILTKEDFTPITEVDIECTVGEVT 465 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547 +A I+ LE P+G NP P + Q IR + HL++ E Q+ +L + F Sbjct: 466 LATIEQLEMLAPFGVANPKPKVLVKDVLPQQIRQIGNKSNHLKLVIE-QEGSSLDCVGFG 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 T + S G + V G L +N W ++ QL + D + F + Sbjct: 525 FGET----YHHVSPGASLDVLGELSINEWNNFRKPQLFLKDIRVTDWQLFDIR 573 >gi|189502726|ref|YP_001958443.1| hypothetical protein Aasi_1422 [Candidatus Amoebophilus asiaticus 5a2] gi|189498167|gb|ACE06714.1| hypothetical protein Aasi_1422 [Candidatus Amoebophilus asiaticus 5a2] Length = 566 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 178/579 (30%), Positives = 282/579 (48%), Gaps = 17/579 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RWV E ++ + +A +LV + V+ + AKD+ PS+ L DP I Sbjct: 3 KRWVFQTMPE-PTVVASLANAIGVDSSIAALLVQKGVTDFNQAKDYFRPSLADLH-DPFI 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA R+++AI N E+I+I+GDYDVDG SV+L+ FL YIPDR +G Sbjct: 61 MKDMDKAVGRLLRAIENQEEILIYGDYDVDGVTSVSLVYGFLKQYHSKLQFYIPDRYKEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + I G LIIT+DCG + + +Q A GIDVIV DHH+ PAYA+ Sbjct: 121 YGVSKQAINWAIETGISLIITLDCGIKATECIQQAQIAGIDVIVCDHHEPGEGLPPAYAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + L GV F +L + L LDLVA++ CD+V Sbjct: 181 LDPKQKTCPYPFKELSGCGVGFKLLQAFV-----LKQNISLDILYRYLDLVAISIACDLV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL NR GL + G++A+I+ N+ + L + +GP +NA GR+ Sbjct: 236 PLTDENRILAYHGLKRLNNSPSFGIQAIIQVANLPWTLGISQLVFGLGPRLNAAGRVDHG 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +L LL+++DS LA +++ N RR ++S + +A +++ D A V+ Sbjct: 296 SLAVNLLLAEDSVTASSLARQIEDKNGFRRYLDSTITAEAL-QLMKASDASLIAKTTVLF 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+R E + RP+ ++ K GS RS+ G++I + ++ E +L Sbjct: 355 KEDWHKGVIGIVASRCIEHYYRPTIILTASG-NKATGSARSVAGYNIYEAITECAE--LL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGHA AAGLT+ N + F++ + + + PV KID +L V + Sbjct: 412 EQYGGHAHAAGLTLPLENIISFQERFEQVVSSTISQELLIPVQKIDLLLPLEKVTNKFYN 471 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPL 553 +L P+G GN PVFA R++ HL++T E + AI F + Sbjct: 472 ILNQMAPFGNGNMRPVFATELVIATKYRILKENHLKLTVQEPASGICIDAIGFGLAKYAH 531 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + K + + N ++G QL + P+ Sbjct: 532 ----LVCDRKPFKIAYTIERNNYQGQVNLQLNIKGLQPI 566 >gi|332291722|ref|YP_004430331.1| single-stranded-DNA-specific exonuclease RecJ [Krokinobacter diaphorus 4H-3-7-5] gi|332169808|gb|AEE19063.1| single-stranded-DNA-specific exonuclease RecJ [Krokinobacter diaphorus 4H-3-7-5] Length = 563 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 166/579 (28%), Positives = 272/579 (46%), Gaps = 22/579 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW E + + ++ + + ++R+L+ R++ + AK F PS+ L DP ++ Sbjct: 2 RWTLKPKPE-AQKVTNLAKELGVEEPISRLLIQRDIDTFEKAKQFFRPSLDDLY-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI QAI E I++FGDYDVDG SVALM +L YIPDR +GY Sbjct: 60 KDMDVAVARIEQAIAQGENILVFGDYDVDGTTSVALMSSYLDTIHPQVATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + + + YA +GID I+ DHH+ + A A++ Sbjct: 120 GVSYMGIDFAADNDMTLIIALDCGVKAIEKVAYAKEKGIDFIICDHHRPGDQLPDAVAIL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ I +Q+ +LL LDLVA A D+VP Sbjct: 180 DPKREDCSYPYDELCGCGVGFKLISAIALSRKQN-----FEELLPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G +A+I++V +T ++ ++IGP INA GR+ N Sbjct: 235 ITGENRILAYHGLNVINHAPRAGFEAIIKQVK-KQTLTITDVVFIIGPRINAAGRMVHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + A +++ N +R+ + ++ +QA +++ + VV Sbjct: 294 HAVTLLRETNLDAAIKFASEIEQYNSDRKEADKSITQQALDQIIE--SKEEGNKTTVVFQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E + Sbjct: 352 EDWHKGVIGIVASRLIETYYRPTLVFTRSGD-KYAASARSVKGFDVYNALHECAEH--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + + F++ + P ID ++ + + + Sbjct: 409 QFGGHKYAAGLTLAPEQYEAFKEKFEQVVAASCDERLLVPEIAIDSEIDLADITPKFHRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMTFESQD-SETLQAIAFRVYGT 551 L+ P+G N +P F N + V HL+ T + + + I F + Sbjct: 469 LKQFAPFGPQNMSPTFMTQNLIDTGYGKKVGADQTHLKATVIQNNRGQRIGCIGFNLGD- 527 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + K L N W G+ QLR+ D Sbjct: 528 ---KYELIEDKKIFKAAYSLDENEWNGNVSLQLRLKDIQ 563 >gi|302345680|ref|YP_003814033.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella melaninogenica ATCC 25845] gi|302150163|gb|ADK96425.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella melaninogenica ATCC 25845] Length = 574 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 162/585 (27%), Positives = 282/585 (48%), Gaps = 22/585 (3%) Query: 16 FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +N A + +K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYTPPADTQVNAAKDLGEKLGISPILASLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ + E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA QGID I+ DHH PA A Sbjct: 122 GYGVSKKGIDFAKETGVKLIIILDCGIKAIEEITYAKEQGIDFIICDHHVPDEVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD LC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDTYPFKDLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLKA+++ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSLGLKAIVDICGLNGRELSMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ + A +D N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKKSVDLLVEREYSLALDQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ ++ GS RS+ GFD+ + Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT++ + FQ + + + ID V++ + L Sbjct: 413 LLLNFGGHTYAAGLTMKWADVKEFRKRFQAYVEEHIEPEQREAILDIDAVIDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GNP P+F + + +VV H+++ + + + IAF Sbjct: 473 HTDLKRFAPFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTE 572 >gi|95929295|ref|ZP_01312039.1| single-stranded-DNA-specific exonuclease RecJ [Desulfuromonas acetoxidans DSM 684] gi|95134793|gb|EAT16448.1| single-stranded-DNA-specific exonuclease RecJ [Desulfuromonas acetoxidans DSM 684] Length = 576 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 188/579 (32%), Positives = 304/579 (52%), Gaps = 16/579 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + + +V ++L R +S + A+ FL S+ L PDP+ Sbjct: 7 RSWKER-QSAKPVDWQQWSARLGCAPLVCQLLSQRGISTLEEAQAFLTASLSQL-PDPMA 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + A R+VQA+ E I + GDYDVDG + AL+ + L VN +IP R+ DG Sbjct: 65 LRGMESAVDRLVQAVKAGEPIAVHGDYDVDGISGTALLTQCLRWFGVNVTYHIPLRMRDG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + + + +G +L+++VDCG +++ Q A + GI++I+ DHHQ + + Sbjct: 125 YGLSEVALRRTLEQGIRLVVSVDCGISAHAEAQLAADLGIELIITDHHQPPETLPVSLSC 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDV 253 +NP D L GV F+V++ + LR+ +P DL +LDLVAL TV D+ Sbjct: 185 INPWLPDCSYPDKRLSGVGVAFMVMIALRARLRETGNLPDPEPDLRYVLDLVALGTVADL 244 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 VPL G+NRA V GL + +Q GL AL++ + + +TA +GY + P +NA GR+ + Sbjct: 245 VPLQGVNRALVSSGLRLMAQQPRVGLAALVKVAEVRA-VTAGVVGYQLAPRLNAAGRLED 303 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LG LL+ + SQ +A +L+ N RR +E +L+QA ++ D A IV+ Sbjct: 304 ATLGVDLLLDEVSQSAMPVAEQLNQFNHQRRQIEQQVLDQAIERIERDLTD--DALTIVL 361 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 +RWH G++G++A+RL E++ RP+ I+ E+G+G GS RSI+GF + + E Sbjct: 362 ADERWHAGVIGIVASRLVERYHRPTVLIA-LEEGQGKGSARSIKGFHLYQAFEACQE--P 418 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ R + F+++A + + ++ V + D L ++ L Sbjct: 419 LSGFGGHEFAAGLSIDAACVSRFTEQFERYAQSHLNPVMLGAVREYDAELVLEEIDETLY 478 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 D L++ P+G GNP PVF + V HL+ + + QD ++ IAF + Sbjct: 479 DELQALAPFGMGNPEPVFVVRQVHVHRPSCVAEKHLRFSLQ-QDGYSVPCIAFGMA---- 533 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + G+ + V + +N WRG K QL V D P Sbjct: 534 -QRQDEVVGQAVDVLFQVGMNTWRGQKSLQLIVKDIMPS 571 >gi|89100792|ref|ZP_01173645.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. NRRL B-14911] gi|89084495|gb|EAR63643.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. NRRL B-14911] Length = 788 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 183/592 (30%), Positives = 294/592 (49%), Gaps = 27/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S RW+ Q ++A + + I IVA +LVNR + + + A+DFL + DP Sbjct: 4 SKTRWIVR--QSDKDKADTLISELKISPIVASLLVNRGLDTPESAQDFLYGN-NGEFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D A RI +AI +E I+I+GDYD DG S ++MM L N + YIP+R Sbjct: 61 FLLAGMDAAVSRINKAINENEPILIYGDYDADGVTSTSVMMITLRSLGANVDFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN G +L+ITVD G ++ A G+D+I+ DHH+ A Sbjct: 121 EGYGPNEGAFRHAAEIGTKLLITVDTGISAVHEASIAKELGMDLIITDHHEPGPVLPEAL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L L GV F V + + + LL++ A+ TV D Sbjct: 181 AIIHPKLEGSLYPFRELAGVGVAFKVAHALLGNIPE-----------ELLEIAAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311 +V L G NR V +G+ + GL AL + N+ + E +G+M+ P +NA GR+ Sbjct: 230 LVSLKGENRLLVQRGIKKLKVTKRAGLLALFKLANVEQAAVDEETIGFMLAPRLNAAGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ LL++DD +E M+A ++D +N+ R+ + S + E+A +V + + +V+ Sbjct: 290 DSADPAVHLLLTDDREEAAMIAEEIDSMNKERQSIVSQIAEEAIKEVEEKYPAGEN-AVL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+ G++G++A+RL +KF RP+ +SF+ E G GS RSI GFD+ K +S Sbjct: 349 VIGKEGWNAGVIGIVASRLVDKFYRPAIVLSFDKEKGTAKGSARSIAGFDLYKNLSAC-- 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAG+T+ + G L + A + PV +D ++ V++ Sbjct: 407 RDILPHFGGHPMAAGMTLGLGDVGELRERLNGLAKEQLSDEDFIPVASLDAEVSLEDVSL 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 I+ ++ P+G NP P + + S+R + HL+M + S L I F + Sbjct: 467 PAIEQMQLLSPFGMDNPKPRVLIKDAPIASMRKIGSGQNHLKMAL-GEGSSALDGIGFGL 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 F S R+ V G L +N W ++ Q+ + D S E F + Sbjct: 526 GEL----FHHISADSRISVIGELSINEWNNIRKPQIFLHDLSVAEWQLFDLR 573 >gi|323702156|ref|ZP_08113823.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum nigrificans DSM 574] gi|323532843|gb|EGB22715.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum nigrificans DSM 574] Length = 889 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 171/579 (29%), Positives = 284/579 (49%), Gaps = 21/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W + I+ + + I+A++L+NR + ++D A+ FL + L P + Sbjct: 5 KKWRVKSPNPALQHI--ISTELGVSHILAQLLINRGIYTVDQARAFLGSELNRLF-SPWL 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA RI+ A E I+++GDYDVDG +++ L + +IP R+ +G Sbjct: 62 MKDMEKAVERILLAREKGEYILVYGDYDVDGITGTTILVLALRKLGCQVDYFIPHRLEEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E+ + +G L++TVDCG + + A +D+++ DHH+ PA A+ Sbjct: 122 YGLNKEALERAVEQGVTLVVTVDCGISGAAEVAAARELSLDIVITDHHEPPDILPPAVAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R D L GV ++ +++ + + LDLV L TV D+V Sbjct: 182 VNPKRNDCHYPFKELAGVGVALKLIQGLFQRAGLGQR-----EWEEYLDLVCLGTVADIV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 PL G NR V GL PGL+ALI+ I S + LG+ + P +NA GR+G+ Sbjct: 237 PLQGENRIIVKHGLDKISNTCRPGLQALIKISGIRSESLGTRELGFGLAPRLNAAGRMGD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LG LL++ D E LA L+ NQ R+ +E+ +L +A A + + + V+V+ Sbjct: 297 ATLGVELLLASDPTCAEELATTLNKGNQERQQVEAKVLSEAMALLEAHPT-MAEDKVLVL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WHPG++G++A+RL ++F RP IS EDGKG GS RSI GF++ + + + Sbjct: 356 SSANWHPGVIGIVASRLVDRFYRPVLMIS-LEDGKGKGSARSIPGFNLYQAMVNC--QDY 412 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGHAMAAG +++ K+A ++ + TP +D ++ + +++ + Sbjct: 413 LQQFGGHAMAAGFSIDADKIDDFRLAINKYADEVLTEELLTPNLDLDAMVQLTDLSLDTV 472 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 L+ P+G NP P+ + + R V HL++ D L I F + Sbjct: 473 QELDQLSPFGHCNPGPILGCCEATVINCREVGKNGGHLKLRVR-GDHVILDGIGFNMASY 531 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 M + + + +N W G QL V + Sbjct: 532 S----EMLATNDTIDMAFVPSINVWHGRASVQLEVKEFK 566 >gi|150024966|ref|YP_001295792.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacterium psychrophilum JIP02/86] gi|149771507|emb|CAL42976.1| Single-stranded-DNA-specific exonuclease RecJ [Flavobacterium psychrophilum JIP02/86] Length = 562 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 173/577 (29%), Positives = 282/577 (48%), Gaps = 21/577 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + + + + I D VA +L+ R + + D AK F PS+ L +P ++ Sbjct: 2 RWTIKP-KPAEEKVKHLVEVLNIKDFVASLLIQRGIETYDQAKTFFRPSLDDLH-NPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RRI +AI N+E IM+FGDYDVDG +V+L+ +L N YIPDR +GY Sbjct: 60 KDMDKAVRRIEKAIANNENIMVFGDYDVDGTTAVSLVSSYLKSYYKNVATYIPDRYDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG S + + YA + ID I+ DHH+ A A++ Sbjct: 120 GISYKGIDYADDNNITLIIALDCGIKSVEHVAYAKAKNIDFIICDHHRPGVFLPEAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + +N+ D + LDLVA A D+VP Sbjct: 180 DPKRPDCFYPYDELCGCGVGFKLIQAL-----GENRNQTITDFIPYLDLVATAIAADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V PG+KALI+ + +T ++ ++I P INA GRI N Sbjct: 235 ITGENRVLAKFGLEVINTNPRPGIKALIQNIK-KETLTITDVVFIIAPRINAAGRIKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 +LL + + E A ++++ N +R+ ++ + ++A ++ + + + VV Sbjct: 294 YAVQLLTEFNLPQAEEFATQIEIFNADRKDLDKQITKEALQQI--ENNKEENNFTTVVYQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E +P+ + D K S RS++ FD+ + L Sbjct: 352 EDWHKGVIGIVASRLIETHYKPTIVFTKSGD-KLAASARSVKDFDVYNALEE--SAAFLE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAG+T++ N+ + + F++ N + + P ID L S +N L+ + Sbjct: 409 QFGGHMYAAGMTLKEENYKKFKNKFEEVVKNSIQPDLLIPEIAIDAELKLSDINEKLVRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G N PVF N + + HL++ + +SE AI F + Sbjct: 469 LKQFEPFGPENMTPVFISKNINDTGYAKTLGKDEEHLRLFVKQNNSEGFAAIGFNLANKK 528 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + K ++ N W G+ QLR+ D Sbjct: 529 A----LTENQKPFDAVYYIDENIWNGNVTLQLRLRDI 561 >gi|16125635|ref|NP_420199.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter crescentus CB15] gi|221234387|ref|YP_002516823.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter crescentus NA1000] gi|13422741|gb|AAK23367.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter crescentus CB15] gi|220963559|gb|ACL94915.1| single-stranded-DNA-specific exonuclease recJ [Caulobacter crescentus NA1000] Length = 606 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 227/593 (38%), Positives = 343/593 (57%), Gaps = 8/593 (1%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 ++ AFLGVE S+SG W + I Q+H + + +A+ LV+R V++++A+ + Sbjct: 9 ISSSAFLGVERSLSGRAWRERP--ADLAVVREIQQRHGLIEPLAKALVSRGVTLEHAEHY 66 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L P+++ L PDP + TD D+AA ++ A+ M+F DYDVDGA S A ++R+ H Sbjct: 67 LRPTLKALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMG 126 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 V +YIPDR+ +GYGP+P+ K + GA+L++T+DCG+ +YDA+ A G++V+VID Sbjct: 127 VELPIYIPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVID 186 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFD 237 HH ++ + A A+VNPNR SGQG L AAGV F++L + R R+ D Sbjct: 187 HHLMREDPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLFTEDRPQPD 246 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 LDLVAL VCDV L+G NRA GL NPGLKAL E S + Sbjct: 247 PRQWLDLVALGEVCDVTQLVGFNRALTALGLRAMGAWANPGLKALFEVGKGSGEPSVFTA 306 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+++GP INAGGR+G S+LG+RLL +DD E LA +LD LN R+ +E+A++E+A A Sbjct: 307 GFILGPRINAGGRVGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAM 366 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSI 416 + + A VIVV GD WHPG++G++A RL+E++ +P I G GSGRS Sbjct: 367 LERGSNFNPDAPVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQ 426 Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 G ++G+ + A E G+L+ GGGHAMAAGL++ F ++ + A+ Sbjct: 427 SGVNLGRAIQAAFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVEA- 485 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536 ++D ++ A N AL+D + P+G GNP P+FA + + + + H++M Sbjct: 486 VEVDALVQPRAANRALLDDFQRLAPFGPGNPEPLFALSQVRPERVSALKGGHVRMDLVGP 545 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + ++AI++R TPLG+ L+ + G + V G L + + G QL + DA Sbjct: 546 TGDRIKAISWRSAETPLGQRLL-AGGGPLDVVGKLKPDDYMGRNGVQLEIEDA 597 >gi|170741326|ref|YP_001769981.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium sp. 4-46] gi|168195600|gb|ACA17547.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacterium sp. 4-46] Length = 597 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 276/592 (46%), Positives = 364/592 (61%), Gaps = 3/592 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + L V S+ G W +A A I Q H +P+++ARVL R V+ FL Sbjct: 8 PRPLLDVHRSVLGRPWRERCADGPPQQAAATIAQSHGLPEVLARVLAGRGVAPRDVPLFL 67 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P +R LMPDP +L D + AA R+ A+ EK+ IFGDYDVDGAAS AL+ L V Sbjct: 68 EPRLRDLMPDPAVLLDMEAAADRLAHAVLRREKVAIFGDYDVDGAASAALLAGALRDLGV 127 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA+L++TVDCG+ + L A G+DVIV+DH Sbjct: 128 PYRLHIPDRITEGYGPNVEAVRVLAGEGARLLVTVDCGTAGHAPLAEAARLGLDVIVLDH 187 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241 H PA A+VNPNRLDDLSG GHLCAAGVVFL LV + R LR+D DL++ Sbjct: 188 HGAPESLPPARAVVNPNRLDDLSGLGHLCAAGVVFLTLVALKRRLRRDGV--DLPDLMTG 245 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVALATV DVVPL GLNRA+V +GL V R +G GL AL++ + P A +LG+++ Sbjct: 246 LDLVALATVADVVPLAGLNRAFVRQGLAVMRGRGRLGLAALLDAAGLGEPPQAWHLGFLV 305 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG++ LG+RLL+ +D E +A +LD LN+ R+ +E+A + +AEA + Sbjct: 306 GPRINAGGRIGDATLGARLLLCEDPIEAAGIAAQLDQLNRERQAIEAAAVAEAEALTALR 365 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + +VIV WHPG+VGL+AARLKE+FGRP+FA + +DG GSGRSI G D+ Sbjct: 366 LEREPDQAVIVTGSPDWHPGVVGLIAARLKERFGRPAFAFALRQDGSATGSGRSIVGADL 425 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G+ V AVE G+ KGGGHAMAAG+T+ V+ R D + V IDG Sbjct: 426 GRAVRRAVECGLAAKGGGHAMAAGVTIAAVDLDRFRDALARDLAASVGEARAAEALLIDG 485 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L+A V LI LE AGP+G G P PVFA H++ R+V H+++ +D T+ Sbjct: 486 TLSAGGVQPDLIAALERAGPFGQGAPEPVFALARHRVADARMVGTGHVKVQLRGRDGVTV 545 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 AIAFR PLG FL++ G+ +H G L + WRGS+R QLR+ DA+ Sbjct: 546 PAIAFRAAEGPLGRFLLRGIGRDIHAAGTLARDRWRGSERVQLRLCDAAEAT 597 >gi|220932058|ref|YP_002508966.1| single-stranded-DNA-specific exonuclease RecJ [Halothermothrix orenii H 168] gi|219993368|gb|ACL69971.1| single-stranded-DNA-specific exonuclease RecJ [Halothermothrix orenii H 168] Length = 814 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 183/587 (31%), Positives = 317/587 (54%), Gaps = 29/587 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W + + + + + ++ +L +R ++ D FL+ I+ L P + Sbjct: 3 KKWQFIKQKLDGSL-------NDLEPVLQSILYSRGITDRDEINRFLSCRIQDLH-SPFL 54 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVD 133 + D KA RI+ AI + EKI+++GDYDVDG S AL+ + + Y+P+R+ + Sbjct: 55 MKDMGKAVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKE 114 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N ++K IN+ L++TVDCG + + ++YAT +G++VIV DHHQ + PA A Sbjct: 115 GYGLNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIA 174 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P+R DD +L GV F + + + ++ + LL L+D+V+L ++ D+ Sbjct: 175 VLDPHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEI---SDFLLRLIDIVSLGSIADI 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VPL+G NR V +GL N GL+ L++++++ + A ++GY++ P +NA GR+ Sbjct: 232 VPLLGENRIIVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRME 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG LL +D + + +A +L LN++R+ E + E A + + D+ + IV Sbjct: 292 DPSLGIELLTTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMI-EKTVDLNKDKGIV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A+RL EK+ RP IS EDG G GS RSIEG +I K + F Sbjct: 351 LASPDWHHGVIGIVASRLVEKYYRPVIMIS-LEDGIGKGSCRSIEGLNIYKALDFC--SS 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L+ GGH AAGL + + + + D F + +++ PV K+D +L +N+ Sbjct: 408 YLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNF 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 L+ PYG GNP P F N + +R V HL+ T + L+ I F Sbjct: 468 YKTLKQLEPYGVGNPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKG----LKGIGF---- 519 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 G+ L++ + K++ + +L +N W G++ +L++LD + E ++ Sbjct: 520 -DFGDKLIEFKNKKVDLAFYLTLNTWNGAEEVELQLLDVNVKESINY 565 >gi|194334478|ref|YP_002016338.1| single-stranded-DNA-specific exonuclease RecJ [Prosthecochloris aestuarii DSM 271] gi|194312296|gb|ACF46691.1| single-stranded-DNA-specific exonuclease RecJ [Prosthecochloris aestuarii DSM 271] Length = 570 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 165/583 (28%), Positives = 272/583 (46%), Gaps = 19/583 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 FRW ++++ + +AR L NR + D AK F P ++P P + Sbjct: 4 FRWTIR--DSDDEACERLSREINVSLPIARALCNRGICDFDQAKAFFRPDPA-VIPSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D A R+++A+ E I+++GDYDVDG AL+M FL + YI DR +G Sbjct: 61 FRDMQCAVERVMKALEQGEHILLYGDYDVDGTTGTALLMLFLRSQGAEVSYYINDRFTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + + + GA L+ITVDCG + ++ QGIDVIV DHH+ + A A+ Sbjct: 121 YGLSDAGVGCAVERGAGLVITVDCGIRAVKEVEAFNVQGIDVIVCDHHEPGTLPA-ASAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV F ++ + + +D + LDLVA+AT+ D+V Sbjct: 180 LNPKVPGCSYPFRELCGCGVAFKLVQALIEQMGRD-----AAEWEQYLDLVAVATLADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L NR Y+ +GL + ++ LI + ++A + + I P INA GR+ Sbjct: 235 ALKEENRIYMHQGLQRLKAAPRMSIQELISCMGARLESLSAGVIAFGIAPRINAAGRMQN 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L+SD E A +LD LN RR +++ +L+ AE V S +V+ Sbjct: 295 AATAVEWLMSDSRDECRKHAEELDRLNGERREIDAGILKLAEGMVNGYFASY--CSSLVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL+EK+ P+ + + G GS RS+ G ++ +++ G+ Sbjct: 353 YHEDWHLGVLGIVASRLQEKYYLPTVVLGGSD-GLIKGSVRSVGGLNVMEVLQEC--SGL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGH AAG+T++ N F + + ID L V+ I Sbjct: 410 LEKFGGHEAAAGVTLKPENLQLFRKRFDALSAERLSYEQRQKEVIIDTQLQLDEVSPKFI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++L P+G GNP PVF ++ R++ H++ + ++ I F Sbjct: 470 NVLSQFAPFGFGNPEPVFLSRGLRISGYPRLLKGRHVKFSVKTGSGRIFDVIGFSRED-- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + L + + + L N W G K Q+++ D + + Sbjct: 528 IYRALERGSKQVFSMVYTLEENEWNGRKTIQMKLKDMAVEKSQ 570 >gi|15613803|ref|NP_242106.1| single-strand DNA-specific exonuclease [Bacillus halodurans C-125] gi|10173856|dbj|BAB04959.1| single-strand DNA-specific exonuclease [Bacillus halodurans C-125] Length = 784 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 186/592 (31%), Positives = 291/592 (49%), Gaps = 27/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S RW ++ R + + I IVA++LV R + + AK FL L+ DP Sbjct: 4 SKARWNV--AEQLDERIRPLLEHLHIEPIVAKLLVIRGIDTVEEAKTFLQVD-ESLLHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L ++ R+ QAI EKI+I+GDYD DG +S ++M+ L + YIP+R Sbjct: 61 YELDGMEQVVARVRQAIKAEEKILIYGDYDADGVSSTSVMVYTLRELGAQFDYYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + EG QL+ITVD G + + A G+D IV DHH+ A Sbjct: 121 EGYGPNENALRWAKEEGYQLVITVDTGIAAVHEAEVAKEIGLDFIVTDHHEPPPVLPDAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP + HL GV F + + + LLDLVA+ T+ D Sbjct: 181 AIINPKKPGCSYPCKHLAGVGVAFKLAHALLERVP-----------YDLLDLVAIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VPL NR +GL PG++AL + + AE++G+ IGP INA GR+ Sbjct: 230 LVPLTDENRWLAKEGLKAIETTTKPGIQALKKVCGFHEDNVQAEHVGFGIGPRINAAGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LLI+D + + LA ++D+LN+ R+ + S + +A V + + V+ Sbjct: 290 DSAKPAVELLITDQVETGQQLAEQIDLLNKERQAIVSEIAAEAINLV-KELYPPEDNHVL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430 VV G W+PG++G++A+RL E F RP+ +S++E+ G GS RSIEGFD+ + Sbjct: 349 VVGGHGWNPGVIGIVASRLVETFYRPTIVLSYDEEKGIAKGSARSIEGFDM--FHELSKN 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L GGH MAAGLT+ + L A + P+ +ID + +++ Sbjct: 407 RELLPHFGGHPMAAGLTMSLQDVDELRKRMNAQAREALRPEDFIPITRIDVQASVDEISV 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 + I+ + + PYG GNP P + K++ +R + HL++TF+ Q+ TL + F + Sbjct: 467 STIEKMNALAPYGVGNPEPKVMLTDVKIEGMRKIGAASNHLKVTFQ-QNGTTLDGVGFHL 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S R+ G L +N W G + QL + D + E F + Sbjct: 526 GHLS----DEISPTARVSAVGVLSINEWNGHVKPQLMIEDLAVNEWQLFDWR 573 >gi|260887826|ref|ZP_05899089.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sputigena ATCC 35185] gi|330838607|ref|YP_004413187.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sputigena ATCC 35185] gi|260862432|gb|EEX76932.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sputigena ATCC 35185] gi|329746371|gb|AEB99727.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sputigena ATCC 35185] Length = 656 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 180/584 (30%), Positives = 311/584 (53%), Gaps = 26/584 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 W L + RA+ +Q+ A +L++R ++ + A+ FL+P + DP + Sbjct: 3 KEWSLLP--DTSARAVEFSQRIGTTPFTAALLLHRGITSDEEARAFLHPE-KQPFHDPFL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA RI QAI E+I+++GDYDVDG + +L+ R L A+ +IP R DG Sbjct: 60 MRDMEKAVSRIEQAIEAQERIVVYGDYDVDGITATSLLCRNLRQLGAAADYFIPHRQKDG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +++ I GA+LI+TVDCG ++ + A ++ +D+I+ DHH E A A+ Sbjct: 120 YGLHKETLDEIIAGGARLIVTVDCGISAVEEAAAAKDK-VDLIITDHHLPGKELPKALAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P+R D ++ GV F + +++ +R LD+VAL TV DVV Sbjct: 179 IDPHRADCSYPDKNIAGVGVAFKLCQALWQKMRGKAFTGD-------LDIVALGTVADVV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL+G NR V +GL V ++ PG++AL+ ITA ++G+++ P +NA GR+ Sbjct: 232 PLLGENRKIVQQGLRVLKKSKRPGIQALLAVTELQEKEITAGHIGFVLAPRLNAAGRLAS 291 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G LL+++D +E + +A +LD N+ R+ +E +L+ AE ++ + D+++A V+V+ Sbjct: 292 ALRGVELLLTEDGEEAQAIAEELDAANRERQAVEQEILQVAEKQI--EEIDVKRAHVLVL 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WHPG++G++A+R+ E++ RP+ I+ EEDG G GS RSI GF + + +S E Sbjct: 350 HGEGWHPGVIGIVASRIVERYYRPTVIIA-EEDGIGKGSCRSIRGFHMFEALSACGEH-- 406 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGHA AAGL++ + + + +A ++ P+ I+ L + L+ Sbjct: 407 LLGFGGHAQAAGLSLRSADVASFREAMEAYAAKVLTEEDFVPILDIELELAPEKITEQLM 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 ++ PYG GNP P+F+ + R + HL+ + D ++ +A+ Sbjct: 467 TEIKLLEPYGMGNPKPLFSTHGVRGSYARQIGKEGQHLKFELDGLD-ASIDVLAWG---- 521 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 GE +R+ + + WR + QL + D P Sbjct: 522 -KGEEAPLVNRERIDIAYFPEYHVWREKRSLQLMLEDFRPARAE 564 >gi|317128218|ref|YP_004094500.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cellulosilyticus DSM 2522] gi|315473166|gb|ADU29769.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cellulosilyticus DSM 2522] Length = 781 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 192/589 (32%), Positives = 290/589 (49%), Gaps = 29/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW E + + + + I I AR LV R A+ FL+ ++ DP +L Sbjct: 7 RWKITEANEN--QVMELANQLNISMIAARFLVQRGYDDVHKAQSFLHMD-ASMIHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA +RI AI +E I++FGDYD DG S +LM L N Y+P+R +GY Sbjct: 64 KDMEKAVKRIHTAIKENENILVFGDYDADGVTSTSLMYLTLKQLGANVGFYVPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN E LIITVD G + + A G+D+I+ DHH+ AYA++ Sbjct: 124 GPNEQAFRHAKEENVSLIITVDTGIAANHEAEVAKELGVDLIITDHHEPPPTIPDAYAVI 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP + D +L GV F V + + +DLVA+ ++ D+VP Sbjct: 184 NPKQDDCFYPNKNLAGVGVAFKVAHALLNRVP-----------TEYIDLVAIGSIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 LI NR +G+ R+ PGLKAL+E NI+ + E++G+MIGP +NA GR+ + Sbjct: 233 LIDENRFLAAEGIHSLTREQRPGLKALMEHCNINPLELNEEHIGFMIGPRLNAAGRLDSA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + +LL+S+D E LA+ +D LN+ R+ + + M ++AE +V SV++V Sbjct: 293 DPAIQLLLSEDDIEAYELAIMIDDLNKERQTIVNEMAKEAEEQV---LAKDTVPSVLIVG 349 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 W+ G++G++A+RL EKF RP+ +S +E G GS RSIEGFD+ + +S E Sbjct: 350 QAGWNAGVIGIVASRLVEKFYRPTIVLSLDESTGLAKGSARSIEGFDLFQALSQCREW-- 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAGLT++ N L + A V +D + S V I Sbjct: 408 LPHFGGHPMAAGLTMKIENINLLQEKMCNIAETTVAEENWIKSLAVDLPVKVSEVTTEAI 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 L+ P+G GNP P N +L + + HL+++ + ++S L IAFR+ Sbjct: 468 THLQEMAPFGVGNPAPKALIENVELAMTKKIGAKEDHLKLSLKDEES-VLDGIAFRMGNI 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G L +N W G + Q+ + D E F + Sbjct: 527 ----ADELSPIAKLSVVGQLSINEWNGHVKPQMIIEDIKVDEWQLFDLR 571 >gi|86137916|ref|ZP_01056492.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. MED193] gi|85825508|gb|EAQ45707.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. MED193] Length = 581 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 226/599 (37%), Positives = 330/599 (55%), Gaps = 31/599 (5%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLGVE S++G RW+ L A + Q+ +P + +VL R V A+ FL P Sbjct: 2 SFLGVENSLTGRRWLGLGID-LERAAEHMAQQTGLPSPLCQVLARRGVPAHEAQGFLTPH 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++ L+PDP + D + AA R ++A+ ++I IF DYDVDG +S AL++ +L + A Sbjct: 61 LKDLLPDPRRMKDMELAAARFLEAVQTRQRIAIFADYDVDGGSSAALLLVWLRAMGLQAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M LI+ VDCG+ S+ + A +G DV+V+DHH Sbjct: 121 LYIPDRIDEGYGPNEEAMAGLAQ-AHDLIVCVDCGTLSHGPI--AAAKGADVVVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A+VNPNR D+ G+ CAAGVVFL+LV + R R+ + DL+ LLDL Sbjct: 178 GETLPECVAVVNPNRQDEDGELGYFCAAGVVFLMLVEVRRQAREKG-LSTGPDLMGLLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G NRA V +GL V + PGL AL + + + + +LG+++GP Sbjct: 237 VALATVADVAPLVGANRALVRQGLKVLGARQRPGLVALADVSRMDAAPSTYHLGFLLGPR 296 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG+++LG+RLL +++ E LA +LD LN RR +E+A+ A + + D Sbjct: 297 VNAGGRIGKADLGARLLATENPHEAAALAERLDQLNTERRDIENAVRAAAMEQAEARGFD 356 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 A ++ G+ WHPG+VG++A+RLKE GRP+ I G+G GSGRS+ G D+G Sbjct: 357 ---APLVWAAGEGWHPGVVGIVASRLKEAAGRPAVVIGLHN-GEGKGSGRSVSGIDLGIA 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTV + + K+DG+L Sbjct: 413 IQRTAAEGLLIKGGGHKMAAGLTVAEDKLEAAMERLGDLLAKQGAGSLGPADLKLDGMLM 472 Query: 485 ASAVNIALIDMLES-----------AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 A NI LI+ +E ++FP+ ++ + + HL+++ Sbjct: 473 PGAANIDLIEQIEQAGPFGAGAAAP-----------RYSFPDLAIRFAKRIGETHLKLSL 521 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L AI F + T LG L++ G R H G L +N W G + QLR+ DA+ Sbjct: 522 TDGVGGNLDAICFGAFDTALGPRLLEHGGARFHFAGRLEINSWGGRQSPQLRLEDAAEA 580 >gi|86131037|ref|ZP_01049636.1| single-stranded-DNA-specific exonuclease RecJ [Dokdonia donghaensis MED134] gi|85818448|gb|EAQ39608.1| single-stranded-DNA-specific exonuclease RecJ [Dokdonia donghaensis MED134] Length = 563 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 167/579 (28%), Positives = 275/579 (47%), Gaps = 22/579 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW E + + Q+ + +A +L+ R++ + AK+F PS+ L DP ++ Sbjct: 2 RWTLKPKPE-AQKVAKLAQELGVEAPIATLLIQRDIDTYEKAKNFFRPSLDALH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI QAI E I++FGDYDVDG SVALM +L YIPDR +GY Sbjct: 60 KDMDKAVARIEQAIAQGENILVFGDYDVDGTTSVALMSSYLDTIHPQVATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + + + YA +GID I+ DHH+ + A A++ Sbjct: 120 GVSYMGIDFAADNDMTLIIALDCGVKAIEKVAYAKEKGIDFIICDHHRPGDQLPDAVAIL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ I +Q+ +LL LDLVA A D+VP Sbjct: 180 DPKREDCPYPYDELCGCGVGFKLISAIALSRKQN-----FEELLPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V + G +A+I++V +T ++ ++IGP INA GR+ N Sbjct: 235 ITGENRILAYHGLNVINQAPRAGFEAIIKQVK-KETLTITDVVFIIGPRINAAGRMVHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL D A +++ N +R+ + ++ +QA +++ ++ + +V V Sbjct: 294 HAVTLLRETDLATATKFASEIEQYNSDRKEADKSITQQALDQIIENQEEGNKTTV--VFQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E + Sbjct: 352 EDWHKGVIGIVASRLIETYYRPTLVFTRSGD-KYAASARSVKGFDVYNALHECAEH--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + F++ + P ID +N + + + Sbjct: 409 QFGGHKYAAGLTLLPEQYEAFKAKFEEVVAASCDERLLVPEISIDSEINLADITPKFHRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQ-MTFESQDSETLQAIAFRVYGT 551 ++ P+G N +P F N + V HL+ ++ + I F + Sbjct: 469 IKQFAPFGPRNMSPTFMTKNLTDTGYGKKVGADQTHLKAAVVQNSRGSQIGCIGFNLGD- 527 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + + K + N W G+ QLR+ D Sbjct: 528 ---KYDLITNKKPFMAAYAIDENEWNGNVSLQLRLKDIK 563 >gi|332519367|ref|ZP_08395834.1| single-stranded-DNA-specific exonuclease RecJ [Lacinutrix algicola 5H-3-7-4] gi|332045215|gb|EGI81408.1| single-stranded-DNA-specific exonuclease RecJ [Lacinutrix algicola 5H-3-7-4] Length = 563 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 163/578 (28%), Positives = 274/578 (47%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + + + + + VA +L R + + + AKDF P+++ L DP ++ Sbjct: 2 RWTLKP-KPNLETVQFLQHALQVEEPVATLLAQRGIETYEQAKDFFRPNLKHLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D KA +RI AI N+E I+++GDYDVDG +V+LM +L N YIPDR +GY Sbjct: 60 KDMLKAVKRIEVAIANNENILVYGDYDVDGTTAVSLMSSYLKSEYPNVATYIPDRYGEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YA + ID I+ DHH+ + A A++ Sbjct: 120 GISFQGIDFAEDNNFTLIIALDCGIKAIDKIAYAEEKNIDFIICDHHRPGDKVPNAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + D LC GV F ++ + + DL LDLVA A D+VP Sbjct: 180 DPKQSDCNYPYKELCGCGVGFKLIQALASKKGK-----TVEDLQEYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G KA+I ++ +T ++ ++I P INA GR+ Sbjct: 235 ITGENRILAYFGLQVINSAPRAGFKAIINQIK-KETLTITDVVFVIAPRINAAGRMKHGQ 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + Q ++ A +++ N +RR + + +A ++ + ++ + VV Sbjct: 294 YAVDLLTETNVQTAQVYAQEIENFNTDRREADKQITIEALQQI--ENNNEKDRLTSVVYQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A+RL E + RP+ + K S RS++GFD+ + E + Sbjct: 352 QDWHKGVIGIVASRLIETYYRPTLVFTKSG-NKLAASARSVKGFDVYNALEACAEH--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT++ N+ F++ + + TP ID + + ++ + Sbjct: 409 QFGGHKYAAGLTLKEENYEAFKQKFEEVVQATIDKKLLTPEITIDRQIELNDISDKFYRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552 L P+G GN +PVF N + + V HL++T + S + I F + Sbjct: 469 LSQFAPFGPGNMSPVFMTNNLQDTGYGKCVGEDDKHLRITVKQPGSNAIVCIGFGLGD-- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + KR + N W+G+ QL++ D Sbjct: 527 --KLNLIKNNKRFKAVYSIDENEWQGNVSLQLKLRDLK 562 >gi|288555360|ref|YP_003427295.1| single-strand DNA-specific exonuclease [Bacillus pseudofirmus OF4] gi|288546520|gb|ADC50403.1| single-strand DNA-specific exonuclease [Bacillus pseudofirmus OF4] Length = 789 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 186/589 (31%), Positives = 299/589 (50%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E +A + + + ++VA++LVNR + + + A+ FL + DP +L Sbjct: 7 RWKIQEQDEH--KAGRLVSELGVDELVAQLLVNRGIETPEAARTFLYTK-EMTYHDPYLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 DKA RI +AI N EKI+IFGDYD DG +S ++M+ L+ + YIP+R +GY Sbjct: 64 KGMDKAVARIKEAIANQEKILIFGDYDADGVSSTSVMIYTLNELGAVFDYYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + + EG L++TVD G ++ A +D IV DHH+ AYA+V Sbjct: 124 GPNEPALRRAKEEGYSLVVTVDTGISAVHEANVAKEIDLDFIVTDHHEAPPVLPEAYAIV 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP + D L GV F V + + + LLD+V + T+ D+VP Sbjct: 184 NPKQPDCTYPFKGLAGVGVAFKVSQALLGRIPK-----------ELLDIVVIGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314 LI NR +GL PGL+AL++ I +T +++G+ IGP INA GR+ + Sbjct: 233 LIDENRLMAKEGLKALESTSKPGLRALMKVCGIGQDALTGDHVGFGIGPRINAAGRLDSA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + L+I++DS E E LA ++D LN+ R+ + + + E+A V ++ + V+++ Sbjct: 293 DPAVELMITNDSNEAEHLAAEIDSLNKQRQSIVNTITEEAVEVVESKYPPDEND-VLIIA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G W+ G++G++A+RL E+F RP+ +S +E+ G GS RSIEGFD+ + I Sbjct: 352 GAGWNAGVIGIVASRLVERFYRPTIVLSIDEEKGLAKGSARSIEGFDM--FKELSKSRDI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAGLT++ + L + A ++ P+ KID +++ +I Sbjct: 410 LPHFGGHPMAAGLTMKEPDLNLLRERLNNQAKEVLTEEDFKPLTKIDLSTTVDRISLTVI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 LE+ P+G NP P + +R + HL+M+F Q+ +L I F + Sbjct: 470 KQLEALAPFGVNNPTPKVMLEGVHIDQMRRIGSESNHLKMSFV-QNGASLDGIGFHLGHL 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S+ ++ G L +N W G + Q+ + D + E F + Sbjct: 529 H----DEISQTAKLSAIGTLSINEWNGHVKPQMMLEDLAVKEWQLFDWR 573 >gi|302391501|ref|YP_003827321.1| single-stranded-DNA-specific exonuclease RecJ [Acetohalobium arabaticum DSM 5501] gi|302203578|gb|ADL12256.1| single-stranded-DNA-specific exonuclease RecJ [Acetohalobium arabaticum DSM 5501] Length = 1210 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 186/595 (31%), Positives = 310/595 (52%), Gaps = 21/595 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 I W L ++ I ++A +L +R ++ ++FL + L Sbjct: 2 ILDREWKLL--NRSTEEEPNLSDSLNISSVLAEILSSRGLNSKQKVENFLEVELDGLH-S 58 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L ++A RI A+ + E I I+GDYDVDG S L++ + H V +IP+R+ Sbjct: 59 PFLLEGIEQAVDRISTAMESQEIIGIYGDYDVDGITSTGLLINYFQHLGVEPKYHIPNRL 118 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N +E G +L+ITVDCG + Y ++YA GIDVI+ DHH+V + PA Sbjct: 119 EEGYGLNKDAIESLAQSGVELLITVDCGISDYQEVKYANQLGIDVIITDHHEVPARIPPA 178 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++N + + LC AGV + +++ + +D +V LDL+A+ V Sbjct: 179 EAVINAKQSNCNYPFSQLCGAGVAYKLILALA---DKDQQVNQKEIKEYYLDLLAMGIVA 235 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 D+VPL+ NR V GL + + N GL ALIE V+ + I ++GY++ P +NA GR Sbjct: 236 DIVPLVDENRIMVKYGLELLQNPNNLGLSALIEAVDLTETEINTGHIGYILAPRLNAAGR 295 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 IG +L LLI+DD + +A +L+ +N RR +E+ + ++AE V + D++Q Sbjct: 296 IGNPDLALELLITDDPSQAADIAAELEEINHRRRDIEADIRQEAELMV--EGMDLEQTKA 353 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +V+ + WH G+VG++A+ ++EK+ RP+ I+ E+DG G GS RSI+GF+I + V Sbjct: 354 LVLASENWHSGVVGIVASDIQEKYYRPTIMIAIEDDGIGRGSARSIKGFNIYQAVK--NS 411 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E +L K GGH AAGL++ + + + D ++A + + TP K+D + S ++ Sbjct: 412 EDLLPKFGGHEQAAGLSIAKEDIAQFRDEINQYADDRLSDKDLTPRLKLDCEVELSELSK 471 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 L+ ++ P+G GNP P A + V HL++ + T++ I F + Sbjct: 472 ELVQEIDYLAPFGFGNPRPKLAVREVTVADFATVGSNGEHLKLAVTDEAGTTVECIGFNM 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE----GHHFAK 599 G + S+ + + + + +N W+G QL++ D + E FAK Sbjct: 532 AGF---RQKLISQQEEIDLACTVEINNWQGKSELQLKLKDINFPEVSFIDQLFAK 583 >gi|293394607|ref|ZP_06638901.1| recombination protein J [Serratia odorifera DSM 4582] gi|291422916|gb|EFE96151.1| recombination protein J [Serratia odorifera DSM 4582] Length = 577 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 185/565 (32%), Positives = 277/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ R V + L S++ ++P +L D A + QA+ + +IMI Sbjct: 21 NLHPLLRRLYAQRGVQGEQE---LERSVKGMLP-WQLLDGIDAAVDILQQALADGRRIMI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TV Sbjct: 77 VGDFDADGATSTALTVLALRSMGGNNVQYLVPNRFEDGYGLSPEVVEQAATRGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A +G+ V+V DHH A A+VNPN + L GV F Sbjct: 137 DNGISSHAGVEVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLRECAFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMLALRARLRDSGWFEQRAMAMPNLAELLDLVALGTVADVVPLDANNRILVYQGLNRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 257 AGKCRPGVRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 MLA LD LNQ RR +E M +A + + + WH G+VG+LA+R Sbjct: 317 MLANDLDALNQTRREIEQGMQVEALQLCDQLERTSTTLPYGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + V DG L + + ++L GP+G P Sbjct: 437 LEEARFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELTLETAELLREGGPWGQAFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F ++ R+V HL++ E L IAF V T + S + + Sbjct: 497 EPTFDGR-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG++ QL + P Sbjct: 552 LAYKLDVNEFRGNRSVQLLIQHIWP 576 >gi|56421115|ref|YP_148433.1| single-strand DNA-specific exonuclease [Geobacillus kaustophilus HTA426] gi|56380957|dbj|BAD76865.1| single-strand DNA-specific exonuclease [Geobacillus kaustophilus HTA426] Length = 773 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 288/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + ++ + ++AR+LV R V + A FLNP +R DP +L Sbjct: 7 RWEVERLDE--QAVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNP-LRQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A +R+ +AI E+++++GDYD DG S ++M+ L + YIP+R +GY Sbjct: 64 DGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G +I+TVD G + + A G+DVIV DHH+ A+A++ Sbjct: 124 GPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGMDVIVTDHHEPGPVLPEAHAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLDLVA+ T+ D+VP Sbjct: 184 HPKQPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L+G NR +V GL R GL+AL + I + I + +G++I P +NA GR+G + Sbjct: 233 LVGENRLFVAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL++DD E LA ++D LN+ R+ + + + E+A V Q + V+VV Sbjct: 293 DPAVALLMTDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHR-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ G+VG++A++L E+F RP+ +S E G GS RSI GFD+ S + + Sbjct: 352 GEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDL--FASLSQCRDL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A + TP ID + + + ++ Sbjct: 410 LPHFGGHPMAAGMTLSLDDVEELRQRLNDIAAETLSEDDFTPPTFIDASCSIAELTLSAA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 LE P+G GNP P+ ++++R V H++ F SQD + AI F + Sbjct: 470 RSLERFAPFGVGNPRPLVLIEGASVETMRRVGANGAHMKAVF-SQDGAAIDAIGFGLG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + R+ G L VN W G + QL + D + + F + Sbjct: 527 --PLCEEIAPDARISAVGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVR 573 >gi|163786824|ref|ZP_02181272.1| single-strand DNA specific exonuclease [Flavobacteriales bacterium ALC-1] gi|159878684|gb|EDP72740.1| single-strand DNA specific exonuclease [Flavobacteriales bacterium ALC-1] Length = 563 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 174/578 (30%), Positives = 279/578 (48%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW E + + + + + DIVA +L+ R + + AK F PS L DP ++ Sbjct: 2 RWTLKPKPEAL-KVEVLKKALQVDDIVATLLLQRGLDTYETAKTFFRPSFEDLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI +AI + E I+++GDYDVDG SVALM +L + YIPDR +GY Sbjct: 60 KDMDSAVTRIEKAIKDGENILVYGDYDVDGTTSVALMSSYLKTRIDSVATYIPDRYDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + G LII +DCG + D + YA +GID I+ DHH+ + A A++ Sbjct: 120 GVSYKGIDFADDNGFSLIIALDCGVKAIDKVAYAKEKGIDFIICDHHRPGDQLPDAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + N+ DL+ LDLVA A D+VP Sbjct: 180 DPKREDCEYPFKELCGCGVGFKLITALAS-----NQGQTVQDLVEYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 ++ NRA GL V + PG+KA+I V +T ++ ++I P INA GR+ N Sbjct: 235 IVEENRALAYFGLQVINTKPRPGMKAIIAEVKKDE-LTITDVVFIIAPRINAAGRMKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL D A+ +D N +RR + + +A ++ + ++ Q+ VV Sbjct: 294 HAVTLLTETDFNLAAEYAVDIDQFNTDRRETDKRITAEALIQI--EENNEQEGFTTVVYK 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS++GFD+ + E + Sbjct: 352 EDWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEACSEY--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ N+ F+ + + P K+D + S +N L+ + Sbjct: 409 QFGGHKYAAGLTLLPENYEAFKAKFESVVKETIDPKLLIPEIKVDLEIELSQINDKLMRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G GN +P F N K + V H++ T ++ + I F + Sbjct: 469 LKQFAPFGPGNMSPTFMSQNIKDTGYGKCVGEDDKHIRFTATQSFNDKIVCIGFGLGD-- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + N+W G+ QL++ D Sbjct: 527 --KLDIIKNKRPFSAAYSIDENHWNGNISLQLKLKDIK 562 >gi|193215962|ref|YP_001997161.1| single-stranded-DNA-specific exonuclease RecJ [Chloroherpeton thalassium ATCC 35110] gi|193089439|gb|ACF14714.1| single-stranded-DNA-specific exonuclease RecJ [Chloroherpeton thalassium ATCC 35110] Length = 567 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 163/577 (28%), Positives = 281/577 (48%), Gaps = 20/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 F W + A+++ + +A L+ R VS AK F P++ +L P + Sbjct: 4 FNWTLYRPEA--ASVKALSESINVSAPIATALLGRGVSNFQEAKAFFRPNLDMLH-SPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA+ R++QA+ N EKI+I+GDYDVDG A+++ FL N Y+ DR +G Sbjct: 61 MKDMKKASGRVLQAVRNGEKILIYGDYDVDGTTGTAMLVLFLKKLGANVAYYVNDRHSEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + S + K +E L+I+VDCG ++ + +++ GID I+ DHH+ S+ AYA+ Sbjct: 121 YGISSSGIAKAKDEQTDLVISVDCGISAVEPVRFCNEHGIDFIICDHHE-PSDLPDAYAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP D LC GV F ++ + ++ ++ + LD VALA D+V Sbjct: 180 LNPKLPDSGYPYRELCGCGVAFKLIQAVASLVEI-----APAEVYAYLDYVALAIAADIV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR + +GL + + L + + + S +++ + + I P INA GR+ Sbjct: 235 NLTGENRVMMAEGLKTIQCRPRQCLAVMSKVCGLDLSNVSSSQIVFSIAPRINAAGRLNH 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + +I++D E LA +L+ +N+ RR +++ ++AE + + AS IV+ Sbjct: 295 ARQAIEWMIAEDEHEAVALAEELEFVNRERREIDTETFKEAEQLA--EVYALNYASSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 D WH G++G++A+R+ EK+ RP+ ++ + G GS RS++G ++ + + E Sbjct: 353 YKDSWHVGVIGIVASRILEKYYRPTLILTAAD-GVLKGSARSVQGVNVYEALQACEEF-- 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGH AAGLT+ N F + + P K+D + + Sbjct: 410 LLQFGGHEHAAGLTLAPSNLESFRKAFDRAVEEQFTIEMRVPEIKVDAEVVLEQITPNFF 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +L P+G NP PVF N KL S +++ HL+ + + F + Sbjct: 470 KVLSQFAPFGPKNPRPVFLTRNVKLCSLPQLLKEKHLKFSICDALGRRFDVVGFNMPEYF 529 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +Q+ +R+ + L N W Q+R+ D Sbjct: 530 KP---LQTPDRRISLVYSLTENVWNRRTSIQIRLRDL 563 >gi|90580581|ref|ZP_01236386.1| putative single-stranded-DNA-specific exonuclease RecJ [Vibrio angustum S14] gi|90438239|gb|EAS63425.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium angustum S14] Length = 574 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 185/562 (32%), Positives = 281/562 (50%), Gaps = 20/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP I+ R+ +R + D L S + L+ + L A + +V A+ + +I+I Sbjct: 19 IPPILQRIYASRGIKND---AELERSAKGLL-NYNQLHGMTSAVQLLVDALSQNTRIIIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA+LI+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGCKNVDYLVPNRFDDGYGLSPEVVEQAIERGAELIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A +G+ V+V DHH A A+VNPN + LC GV F Sbjct: 135 NGVSSIAGVAVAKEKGLTVLVTDHHLPGDCLPIADAIVNPNLNECGFPSKALCGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LRQ +L LLDLVAL TV DVV L G NR V +GL R Sbjct: 195 LMLALRAELRQRGWFEQQGIAMPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++ALIE N + +LG+ +GP INA GR+ + + G LL+ D+ Q Sbjct: 255 GKCRPGIQALIEVANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCDNIQSARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390 +A +LD LNQ R+ +E M ++A A + Q +V WH G++G+LA+R+ Sbjct: 315 MASELDGLNQTRKEIEQGMKDEALAICERLKFNQQDMPYGLVLFQRDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 K+K+ RP A + +G+ GS RSI G + + G+++K GGHAMAAGLT+ Sbjct: 375 KDKYHRPVIAFADAGNGEIKGSCRSIPGLHMRDALDLVDTQNPGMILKFGGHAMAAGLTI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 F N++ V DG L +N+ + ++L + GP+G P Sbjct: 435 PEDKLDAFSKAFDAVVRNVLDEEALKGVLMTDGELGCHELNLDVAEILRAGGPWGQQFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L ++V HL+M E + AIAF V + + +++ + Sbjct: 495 PTFDGT-FRLLHQKLVGGKHLKMMVEPLGGGTVIDAIAFNVDVKRWPD----ASVQQVEL 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589 L VN +RG++ QL V D Sbjct: 550 VYRLDVNEYRGNRSVQLMVEDL 571 >gi|319952857|ref|YP_004164124.1| exonuclease recj [Cellulophaga algicola DSM 14237] gi|319421517|gb|ADV48626.1| exonuclease RecJ [Cellulophaga algicola DSM 14237] Length = 562 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 160/578 (27%), Positives = 267/578 (46%), Gaps = 21/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + + + D+VA++L+ R + + + AK F P + L DP ++ Sbjct: 2 RWTIKAKPEE-EKIKELASALNVEDLVAQLLLQRGISTFEEAKLFFRPQLSDLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI AI E I++FGDYDVDG +VALM +L N YIPDR +GY Sbjct: 60 KDMDIAVARIETAINEGENILVFGDYDVDGTTAVALMSSYLLSFYPNVATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YA +G+D I+ DHH+ + A A++ Sbjct: 120 GVSYKGIDFAEDNNFSLIIALDCGVKAVDKVAYAKEKGVDFIICDHHRPGATLPDAIAIL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + + DL+ LDLVA A D+VP Sbjct: 180 DPKRSDCTYPYDELCGCGVGFKLIQALGSRQGE-----TIEDLIPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G KA+I ++ + +T ++ ++I P INA GR+ Sbjct: 235 ITGENRVLAYYGLKVINSDPRAGFKAIINQIK-KTILTITDVVFVIAPRINAAGRMVHGQ 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + + E A +++ N +RR ++ + ++A +++ + ++ VV Sbjct: 294 HAVNLLTETNQAQAEKFAGEIEKYNSDRRGLDQEITKEALTQIIEN--EEEEGFTSVVYK 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL E + RP+ + D K S RS++GFD+ + + Sbjct: 352 ETWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEGC--ADYIE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + F+K + + P +D + + L+ + Sbjct: 409 QFGGHKYAAGLTLLEEQYQNFKHQFEKVVSETIDPNLLIPEIAVDLRIEIKDITPKLMRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G N PVF N + + V HL+ + I F + Sbjct: 469 INQFEPFGPENMTPVFMAENIQDSGYAKGVGEEGKHLKFAVTQNGYGPIGGIGFSLGD-- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + K + N W+G+ QL++ D Sbjct: 527 --KLPLLTGRKPFSAVFSIDENEWQGNVSLQLKLRDIK 562 >gi|325860540|ref|ZP_08173644.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola CRIS 18C-A] gi|327313685|ref|YP_004329122.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola F0289] gi|325481925|gb|EGC84954.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola CRIS 18C-A] gi|326945082|gb|AEA20967.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella denticola F0289] Length = 574 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 162/585 (27%), Positives = 284/585 (48%), Gaps = 22/585 (3%) Query: 16 FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W + E + A + +K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNHTPPTAEQESAAGELGEKLGISPILAALLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ + E+++++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDAAVDRLNDAMGHKERVLVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + YA QGID I+ DHH PA A Sbjct: 122 GYGVSRKGIDFAKETGVRLIIILDCGIKAVKEIAYAKEQGIDFIICDHHVPDETMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD LC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDAYPFKDLCGCGVGFKFMQAFAK-----NNNIPFSRLIPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLKA+I+ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ + A +D N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKKSVDLLVEREYGMAFRQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ ++ GS RS+ GFD+ V Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAVKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAG+T++ + C FQ + + + ID V++ + L Sbjct: 413 LLLNFGGHTYAAGMTMKWTDVKEFCRRFQTYVEEHIEPEQREAILDIDAVIDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G GNP P+F + + +VV H+++ + + + IAF Sbjct: 473 HNDLKRFAPFGPGNPKPLFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ QL++ D P + Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTD 572 >gi|86134620|ref|ZP_01053202.1| single-stranded-DNA-specific exonuclease RecJ [Polaribacter sp. MED152] gi|85821483|gb|EAQ42630.1| single-stranded-DNA-specific exonuclease RecJ [Polaribacter sp. MED152] Length = 561 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 169/579 (29%), Positives = 282/579 (48%), Gaps = 24/579 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + ++ ++ + +AR+L R++ + + AK F PS+ + DP ++ Sbjct: 2 RWTLKPT-PDSEKVKSLAKELQVSPTIARILCQRDINTFNEAKLFFRPSLEDVH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A RI +AI E I+++GDYDVDG +V+L+ +L S N YIPDR +GY Sbjct: 60 KDMDLAVARIDKAIAKQENILVYGDYDVDGTTAVSLVASYLRTLSPNIATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + + ++ + LII +DCG + D + YAT +GID I+ DHH+ E A A++ Sbjct: 120 GVSYAGIDFAEDNDFALIIALDCGIKAIDKVAYATQKGIDFIICDHHKPGDEIPKAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 N R D LC GV F ++ + +Q + LDLVA A D+VP Sbjct: 180 NAKREDCSYPFDELCGCGVGFKLIQALGVSRQQ-----TIEKFVPYLDLVATAIAADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR G+ V G+KAL+ + +T ++ ++I P INA GR+ N Sbjct: 235 MNGENRVLAYYGIQVINNNPRNGIKALVHQTKKKE-LTITDVVFIIAPRINAAGRMKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL D A +++ N +R+ ++ + ++A +++ + + VV Sbjct: 294 YAVELLTEMDFDSAVQFAADIEIFNADRKDLDKKITDEALIQIIDN--NEEDKFTSVVYQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL EK+ RP+ + D K S RS++GFD+ + E + Sbjct: 352 EDWHKGVIGIVASRLIEKYYRPTLVFTKSGD-KLAASARSVKGFDVYNALLACSEF--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ N+ + + F++ + + TP +D + S + L + Sbjct: 409 QFGGHKYAAGLTLLPENYNKFKNKFEEVVSKTIDKKLLTPEITVDAEIELSEITPKLFRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQM-TFESQDSETLQAIAFRVYGT 551 LE P+G N PVF + + + V +HL++ F+ + +T AI F Sbjct: 469 LEQMAPFGPQNMKPVFKTSSVRDNGYGKKVGADQSHLKLNVFQGDNKQTFGAIGFG---- 524 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG+ L +++ + L N W G K QL + D Sbjct: 525 -LGDKLEEAQND-FDIVYTLDENIWNGHKSIQLVLKDLK 561 >gi|150390115|ref|YP_001320164.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus metalliredigens QYMF] gi|149949977|gb|ABR48505.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus metalliredigens QYMF] Length = 841 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 179/583 (30%), Positives = 297/583 (50%), Gaps = 22/583 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74 W ++++ + A++L NR + AK F++ S+ L DP + Sbjct: 4 KIWTYK--DYNEIEIKKMSEELGVLPFTAQILTNRKVIDTREAKRFIDSSLEQLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D KA RI +AI +EKI I+GDYDVDG +S ++M+++ + + YIPDR+ +G Sbjct: 61 LKDMKKAVDRIQEAIQKNEKIWIYGDYDVDGVSSTSIMLQYFKTIDFSVDYYIPDRVQEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + G LIITVDCG TS++ + A + ID+I+ DHH+ + AYA+ Sbjct: 121 YGINQEAIQLIKSRGGNLIITVDCGITSFEEIALANSLSIDMIITDHHECQGAVPEAYAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D +C G+ ++ + K + +D+VA+ATV D+V Sbjct: 181 INPKQHDCSYPFDSICGCGLALKLIQAL------TPKEEFKSTIYLYIDIVAIATVADIV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL+ NR +V GL N G++AL+E + A ++G+ +GP INA GRIG Sbjct: 235 PLVDENRIFVKNGLQYMPDTKNLGVQALLEVCKLKDRKLNAGHIGFSLGPRINAAGRIGS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++ G +LL S D E++ LA L+ NQNR+ +E +L++A + + V+V+ Sbjct: 295 ADSGVKLLTSSDPAEVQQLAHFLNEENQNRQEIEVKILDEAINMIESSGQ-FNIDKVLVL 353 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+R+ E++ +P ++ E K GS RSI ++ + ++ + + Sbjct: 354 AKEGWHHGVIGIVASRIVERYHKPVIILA-IEGDKAKGSARSIPKLNLFEAMNQC--KDL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 +K GGH AAGLT++ N + + DG+L+ V +LI Sbjct: 411 FLKIGGHEQAAGLTLKSENIEAFRMKINDIVNQTLSPEDFIAQIHCDGLLSLDVVEDSLI 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 D L + PYG GNP+P F + + IR V HL++ S+ S+ + AI F Sbjct: 471 DELGNLEPYGMGNPSPKFIGYDFTIVDIRAVGVDGKHLKLKLGSK-SKQVDAIGFNFGDY 529 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 +G ++H+ N +RG K QL++ D V+ Sbjct: 530 S----DHIEQGDKIHLVYTPEFNEFRGQKNIQLQIKDIKTVKP 568 >gi|297529256|ref|YP_003670531.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. C56-T3] gi|297252508|gb|ADI25954.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. C56-T3] Length = 788 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 289/589 (49%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + ++ + ++AR+LV R V + A FLNP +R DP +L Sbjct: 7 RWEVERLDE--QTVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNP-LRQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A +R+ +AI E+++++GDYD DG S ++M+ L + YIP+R +GY Sbjct: 64 DGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G +I+TVD G + + A G+DVIV DHH+ A+A++ Sbjct: 124 GPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGLDVIVTDHHEPGPVLPEAHAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLDLVA+ T+ D+VP Sbjct: 184 HPKQPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L+G NR +V GL R GL+AL + I+ + I + +G++I P +NA GR+G + Sbjct: 233 LVGENRLFVAHGLEALRATERIGLRALFRQCRINAAAINEQTVGFVIAPRLNAAGRLGGA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL++DD E LA ++D LN+ R+ + + + E+A V Q + V+VV Sbjct: 293 DPAVALLMTDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHR-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ G+VG++A++L E+F RP+ +S +E G GS RSI GFD+ S + + Sbjct: 352 GEGWNAGVVGIVASKLVEQFYRPAVVLSIDQEKGIAKGSARSIHGFDL--FASLSQCRDL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A + TP ID + + + + Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLDAA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 LE P+G GNP P+ ++++R V H++ F SQD + AI F + Sbjct: 470 RGLERFAPFGVGNPRPLVLIEGASVETMRRVGANGAHMKAVF-SQDGAAIDAIGFGLG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + R+ G L VN W G + QL + D + + F + Sbjct: 527 --PLCEEIAPDARISAVGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVR 573 >gi|304384433|ref|ZP_07366838.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella marshii DSM 16973] gi|304334485|gb|EFM00773.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella marshii DSM 16973] Length = 582 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 166/588 (28%), Positives = 280/588 (47%), Gaps = 22/588 (3%) Query: 15 GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 F+W E A + +K + ++A +L++R ++ + AK + P + L+ +P Sbjct: 2 NFKWNYTPPSTEQQQAAKELGEKLGMSPVLASLLIDRGITTESAAKRYFRPQLADLI-NP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D D A R+ A+ E+IM++GDYDVDG SVAL+ +FL N YIPDR Sbjct: 61 FLMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTSVALVYKFLRQFYSNIEYYIPDRYE 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ + +LII +DCG + D + YA QGID I+ DHH + PA Sbjct: 121 EGYGVSIKGIDYAKEKEVKLIIILDCGIKAIDEIAYAKEQGIDFIICDHHVPDEQLPPAA 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP R DD +L GV F + + N L+ LLD A++ D Sbjct: 181 AILNPKRKDDTYPFKYLSGCGVGFKFMQAFVK-----NNGIPFSRLIPLLDFCAVSIAAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +VP++ NR GL + + GLKA+IE N++ ++ ++ + IGP INA GR+ Sbjct: 236 IVPVVDENRILAYHGLKQLNQNPSVGLKAIIEICNLNGRNLSMSDIVFKIGPRINASGRM 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+ D + A +D N+ R+ ++ M E+A ++ + ++ + S I Sbjct: 296 ENGKESVDLLVEKDYTQALQAARHIDEYNEQRKDIDKQMTEEA-NLIVEKLENQKHRSSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + W G++G++A+RL E + RP+ I+ ++ S RSI GFDI + Sbjct: 355 VLYDENWKKGVIGIVASRLTEIYYRPTIVIT-RDENMATASARSIAGFDIYSAIKSC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAG+T++ + FQ + + ID +L+ + Sbjct: 412 DLLQNFGGHTYAAGMTMKWSDVKEFARRFQTYVDEHIRPEQKEATLHIDALLDFKDITKR 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L L+ P+G GNP P+F N + +VV H+++ + + + IAF Sbjct: 472 LHHDLKRFAPFGPGNPKPLFCTNNVYDFGTSKVVGREQEHIKLELVDAKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N ++ QL++ D P E Sbjct: 532 QSRS----ARYIKSKRSFDIAYTIEENAFK-RGGLQLQIEDIRPRENE 574 >gi|315499810|ref|YP_004088613.1| single-stranded-DNA-specific exonuclease recj [Asticcacaulis excentricus CB 48] gi|315417822|gb|ADU14462.1| single-stranded-DNA-specific exonuclease RecJ [Asticcacaulis excentricus CB 48] Length = 622 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 225/604 (37%), Positives = 333/604 (55%), Gaps = 19/604 (3%) Query: 5 AFLGVECSISGFRWVSLLGQE--GINRALAITQKHAIP--------DIVARVLVNRNVSI 54 FLGVE S++G WV + G + ITQ+ A+ + VAR + R V+ Sbjct: 15 PFLGVETSVTGRLWVDRRDSQRVGAHELRQITQQIALKGPMEEAFVEPVARSIAARGVTA 74 Query: 55 DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR 114 D+L P+++ L PDP D +A I+ A+ +KI +F DYDVDGA S A ++R Sbjct: 75 ATLDDYLRPTLKALFPDPDGFMDMPQAVAAILDALQARQKIYVFADYDVDGATSAAQLVR 134 Query: 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI 174 + H ++Y+PDR+++GYGP+ ++ EGA L+ITVDCG++++ AL YA G+ Sbjct: 135 WFRHMGHELSVYVPDRMLEGYGPSEKAFDRLKAEGADLVITVDCGASAHRALDYAARIGL 194 Query: 175 DVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-- 232 +V+VIDHH ++ + A+VNPNR S QG+L AAGVVF+VL + R Sbjct: 195 EVVVIDHHIMREDPPKCRAVVNPNRPGCTSAQGNLAAAGVVFVVLAALNREAETRGLFAE 254 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP- 291 DL LDL AL +CDV L G NRA +GL V R NPG++AL++ Sbjct: 255 RPRPDLTQWLDLAALGAICDVTALSGFNRALASQGLKVMSRLNNPGIRALMQVAGGEPKD 314 Query: 292 ----ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347 + + G+++GP INAGGRIG ++LG RLL +DD+ E LA +LD LN+ RR +E Sbjct: 315 AATALGVFHSGFVLGPRINAGGRIGRADLGVRLLSTDDADEAAALAQELDELNKTRRDVE 374 Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-D 406 +A+ EQA A T+ + VI+V + WHPG++G++A RL+E++ +P I + Sbjct: 375 AAVQEQALALAETKGLVTAEDHVIIVAHEDWHPGVIGIVAGRLRERWHKPVIVIGIDPVT 434 Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 G G GSGRS G ++G+ V+ A E G+L+ GGGHAMAAGL++E L F N Sbjct: 435 GIGKGSGRSQAGINLGQAVTAAFESGLLLSGGGHAMAAGLSIEAARIPELRTFLNSHIAN 494 Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526 +ID L+A A L++ E P+G GNP P+F P ++ + Sbjct: 495 ATVEADRKDRLEIDAALSAGACTRVLLECFEIMAPFGPGNPEPMFVLPGMRVGYASALKG 554 Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 H++ + + L+AIA+R T +G L+ G +HV G L + + G K Q + Sbjct: 555 GHVRCDLIDEGGKRLKAIAWRAQDTAVGAALLNPVGA-IHVAGRLKPDDYMGRKGVQFEI 613 Query: 587 LDAS 590 D + Sbjct: 614 EDIA 617 >gi|134298599|ref|YP_001112095.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum reducens MI-1] gi|134051299|gb|ABO49270.1| exonuclease RecJ [Desulfotomaculum reducens MI-1] Length = 885 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 173/579 (29%), Positives = 283/579 (48%), Gaps = 21/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W + + L+ + I I A++L+NR + ++D A+ FL + M P + Sbjct: 5 KKWRVKAPNPALQQILSF--ELGISKIFAQLLINRGIYTVDQARAFLGSELDK-MFSPWL 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI+ A E+I+++GDYDVDG +++ L A+ +IP R+ +G Sbjct: 62 MQDMKKAVERILGARDKGEQILVYGDYDVDGITGTTVLVLALRRLGCKADYFIPHRLEEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E+ + G L++TVDCG + + ++ A G++V++ DHH+ + A A+ Sbjct: 122 YGLNKVALERAVERGVSLVVTVDCGISGAEEVEVAKALGLEVVITDHHEPPVQLPAAVAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R L GV ++ ++ + LDLV L TV D+V Sbjct: 182 LDPKRSGCSYPFKELAGVGVALKLIQGLFEQAGLSQRN-----WEEYLDLVCLGTVADIV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL G NR V GL PGL+ALI+ I + LG+ + P +NA GR+G+ Sbjct: 237 PLQGENRILVKHGLPQISNSKRPGLQALIKVSGIKAEVLGTRELGFGLAPRLNAAGRMGD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LG LL+++D E +A +LD N R+ +ES +L +A A + T +I Q V+V+ Sbjct: 297 AGLGVELLLAEDLLVAEEMAEELDRGNHERQQVESKVLSEALALLETDS-EISQGKVLVL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WHPG++G++A+RL ++F RP F IS E+GKG GS RSI GF++ + + + Sbjct: 356 ASENWHPGVIGIVASRLVDRFYRPVFMIS-LEEGKGKGSARSIPGFNLYQAMVSC--QDH 412 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGHAMAAG ++ A + TP +D ++N + +++ + Sbjct: 413 LEQFGGHAMAAGFSIHVDKINEFRKTINAMAEEFLSEEHLTPNLDLDALINLNDLSMDTV 472 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 L P G NP P+ + + R V HL+M +D L I F + Sbjct: 473 QELNQLSPLGHCNPGPILGCCQATVINCREVGKNGGHLKMRVR-EDHTVLDGIGFNLASY 531 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 M + + + +N W G QL V + Sbjct: 532 S----EMLAANDTVDMAFIPSINVWNGRTSVQLEVKELK 566 >gi|217979197|ref|YP_002363344.1| single-stranded-DNA-specific exonuclease RecJ [Methylocella silvestris BL2] gi|217504573|gb|ACK51982.1| single-stranded-DNA-specific exonuclease RecJ [Methylocella silvestris BL2] Length = 603 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 271/594 (45%), Positives = 365/594 (61%), Gaps = 5/594 (0%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 ++FLGVE S G W L G RA AITQ DI+AR+L R V + ++L+ Sbjct: 9 PRSFLGVEHSALGVSWRDRLDAGGQARAAAITQLRGHGDILARILAGRGVGPETCDEYLD 68 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R L+PDP + D + AA RI A+ S K+ IFGDYDVDGAAS AL+ + + C V Sbjct: 69 PTLRRLLPDPFCIKDMEPAAERIAAAVEGSRKLAIFGDYDVDGAASSALLADYFTACGVE 128 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 A +YIPDRI +GYGPN + G L+ITVDCG+ S+ L AT G++ IV+DHH Sbjct: 129 AFVYIPDRIFEGYGPNIGAIRNLAAAGCHLLITVDCGTMSHGPLAEATALGLEPIVLDHH 188 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240 Q +P +VNPNR DDLSG G LCAAGVVFL L+ + R LR+ DLLS Sbjct: 189 QAPEN-LPDALIVNPNRQDDLSGLGALCAAGVVFLTLIAVNRRLREKGFFNLRPEPDLLS 247 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LDLV+LATV DV PL GLNRA+V KGL V R++ PGL AL + + P T +LG++ Sbjct: 248 GLDLVSLATVADVAPLGGLNRAFVTKGLAVMRQRLRPGLSALFDVAKLEGPPTPYHLGFL 307 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LG+RLL D E + +A +LD LN+ R+++ES L++AEA+ + Sbjct: 308 IGPRINAGGRIGDAALGARLLSIADPIEAKRIAEELDRLNRERQVIESGTLDEAEAQAIA 367 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 A+ IVV D WHPG+VGL+A+RLKE+ +P+FAI+ G+GSGRS+ G D Sbjct: 368 -GGLSPDAAAIVVASDGWHPGVVGLVASRLKERQRKPAFAIA-FSADLGVGSGRSVPGVD 425 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G +V AVE GILVKGGGHAMAAG+T+ + F + + +D Sbjct: 426 LGAVVRAAVEAGILVKGGGHAMAAGITIAKDRLEDFRGFLESKLADKRTEGGDAHALLVD 485 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 + A+ L+ LE AGPYGAGN PVFA P H+L + V HLQ+ ++ D T Sbjct: 486 AAVTAAGATATLVKSLERAGPYGAGNSEPVFALPAHRLMRVNEVGNGHLQLRAQAGDGST 545 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + IAFR PL + L + G +H+ G L ++ W G++R +LR++D +P G Sbjct: 546 IDGIAFRAAAQPLEKALRAAVGSSVHLAGALALDSWGGTERVRLRLIDLAPASG 599 >gi|117925055|ref|YP_865672.1| exonuclease RecJ [Magnetococcus sp. MC-1] gi|117608811|gb|ABK44266.1| exonuclease RecJ [Magnetococcus sp. MC-1] Length = 592 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 204/593 (34%), Positives = 315/593 (53%), Gaps = 17/593 (2%) Query: 10 ECSISGFRWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRL 67 + S++G W EG NR Q + +A +L +R + + FL P ++ Sbjct: 6 KSSLTGKLWTLRCQPDEGHNRV---VQALGLSHYLAPLLASRKLCGAGETRQFLAPRLKD 62 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 L DP L D A R+ +A+ EKI +FGDYDVDGA S AL+MR+ V +YI Sbjct: 63 L-ADPYDLLDMRVAVERLAEALERGEKIAVFGDYDVDGATSSALLMRYFHELGVALRVYI 121 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R+ +GYGP+ M EG L+ITVDCG T+++ LQ A G+ VI+ DHHQ + + Sbjct: 122 PNRLTEGYGPSVGAMRTLAEEGVSLVITVDCGITAFEPLQEAKALGLAVIITDHHQAREQ 181 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDL 244 A A++NPNR D+ L GV F +++ + R+LR+ L LLDL Sbjct: 182 LPEALAVINPNRQDEPFPYKELAGVGVAFYLVMALNRLLRERGWFNKGRQEPVLKPLLDL 241 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMI 301 VA+ TV DV + GLNRA V GL V + NPGL AL++ V I +T+ ++G+ + Sbjct: 242 VAVGTVADVAGMRGLNRALVTTGLHVLSERSNPGLAALMQVVGIGEEVKELTSTHIGFQL 301 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP +NAGGR+G+ LG +LL D + +A LD N+ R+ +E +L+QA +V + Sbjct: 302 GPRLNAGGRLGQGALGYQLLSCHDQAQALPIAQTLDASNKERQEIERTLLKQAMDQVEAE 361 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFD 420 I + + VV G+ WH G++G++A+RL +K+ +P+ I+ + E G G GSGRSI G + Sbjct: 362 NQPILRRGL-VVAGEGWHAGVIGIVASRLCDKYSKPALVIAIDAETGVGKGSGRSIPGIN 420 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 + + L GGH +AAGLT++R + F+ A P +D Sbjct: 421 LLAAIEA--GAAHLEHFGGHKVAAGLTIQREKIPAFMEAFEDHLTRHYQASAFFPRLTVD 478 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSE 539 L ++ A+ ++S P+G GNP P+F P L+ I+V+ HL M+ + + Sbjct: 479 AELPLDELDFAVARQIQSFSPFGPGNPEPIFILPRVSLRGIKVLKERHLAMSIVCPRTHQ 538 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 ++AI FR+ P+ + + V G L + WRG ++ +L++ D Sbjct: 539 QIEAIGFRMAPGPIVDAIQAGDVAVWDVAGKLTIETWRGREKMKLQLSDVRAA 591 >gi|51473709|ref|YP_067466.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia typhi str. Wilmington] gi|51460021|gb|AAU03984.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsia typhi str. Wilmington] Length = 586 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 222/585 (37%), Positives = 333/585 (56%), Gaps = 14/585 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 SI+G W +E I + + I D++AR++ R ++ ++FL P I+ L+PD Sbjct: 6 SINGKIWKQKQIKEDI--VTELCRSFKISDLLARIVSLRVNNLAEVENFLIPKIKNLLPD 63 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L D DKA RIVQAI ++++I IF DYDVDGA S AL+ L ++ ++Y+PDRI Sbjct: 64 PFHLLDMDKAVDRIVQAIVHNQQICIFADYDVDGATSAALLKHLLRDLNIICDIYVPDRI 123 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGP P ++K + G +L+ITVDCG+ ++DAL+YA + +DVIVIDHH + A Sbjct: 124 YEGYGPTPLAIQKIKDNGTELLITVDCGAMAHDALKYAKDVKLDVIVIDHHISTAILPDA 183 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALA 248 A+VNPNR+D+ S +L A GV FL I L++ N +L+ LDLVAL Sbjct: 184 VAIVNPNRIDETSEYKYLAAVGVTFLFATAILSNLKKRNYFSQSIPTPNLMQYLDLVALG 243 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 TVCD++ L GLNRA+V GL V +++ N G+K L + I+ +LG+++GP INAG Sbjct: 244 TVCDMMKLTGLNRAFVATGLKVMQQRQNIGIKTLYDIAGINEIPQCYHLGFILGPRINAG 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+G+SNLG+ LL + E LA +L+ N R+++E M+++A LTQ + + Sbjct: 304 GRVGKSNLGANLLATSCHNEASKLANELEKYNNERKVIELLMIDEAIDIALTQ----KDS 359 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S++ V + WHPG++G++A RLKEKF +P ++ +G G S RSI G D + A Sbjct: 360 SLLFVVKEGWHPGVIGIVAGRLKEKFDKPVAVVA-LNNGIGKASCRSILGIDFSAEIINA 418 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +++ GGGHAMAAG TV L DF + L + D L ++V Sbjct: 419 KSKDLIIAGGGHAMAAGFTVTAGKLEELQDFLNNAFSISINKLANYKHAEYDIDLTVNSV 478 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ----DSETLQAI 544 N L++ L+ P+G+GN P+F F + + +V H++ ++ L AI Sbjct: 479 NFYLMEELKILEPFGSGNHEPIFKFDDLFILKADIVGSKHIKCMLAPDKRGFGNKVLSAI 538 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AF GTP + L+ SR K + G L N W+ + QL + D Sbjct: 539 AFDAVGTPFEDILLSSRAKHISAIGTLKTNNWKDNYTIQLIIKDL 583 >gi|91215420|ref|ZP_01252391.1| single-stranded-DNA-specific exonuclease RecJ [Psychroflexus torquis ATCC 700755] gi|91186372|gb|EAS72744.1| single-stranded-DNA-specific exonuclease RecJ [Psychroflexus torquis ATCC 700755] Length = 564 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 158/578 (27%), Positives = 276/578 (47%), Gaps = 22/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + I +A + + + +A +L+ R V + + AK F PS+ L DP ++ Sbjct: 2 RWTV-TQEADIQKAEHLQKAIGVSLPIAELLIKRGVETFEKAKTFFRPSLDDLH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +KA I++ + +++ +M+FGDYDVDG SVALM +L + YIPDR +GY Sbjct: 60 KGMEKATSHILETLESNKPVMVFGDYDVDGTTSVALMTTYLKKLGFDVVSYIPDRYDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ +G LII +DCG + D + YA + G++ I+ DHH+ + A A++ Sbjct: 120 GISYQGIDYAKAQGIDLIIALDCGIKAIDKIDYAKSIGVNFIICDHHRPGASIPDAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + D LC GV F ++ + L + + + LDLVA A D+VP Sbjct: 180 DPKQTDCHYPFDELCGCGVGFKLVQALQAKLDR-----PQQQIYTYLDLVATAIGSDIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL + + P KA++E +T ++ +MIGP INA GR+ Sbjct: 235 ITGENRVLAHFGLKLINSRRRPAFKAILENTK-KRELTITDVVFMIGPRINAAGRMKHGL 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L + LL + +++++LA +++ N +R+ + ++ ++A + Q + S VV Sbjct: 294 LATELLCETNYEKVKVLAKDIELYNSSRKETDKSITKEALDMIKEQ--KEEGRSTTVVYQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A+RL E + RP+ + + K S RS++GFD+ + + Sbjct: 352 PHWHKGVIGIVASRLTETYYRPTLVFTKSGE-KLAASARSVKGFDVYDALES--SSEFIE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+E +F F+ + + + P D + + LI + Sbjct: 409 QFGGHKYAAGLTLEEKHFENFKRKFEDVVKSTIDPELLIPEILYDSEITFKDITPKLIRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLA--HLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G N P F N ++ + HL+ +Q AI F + Sbjct: 469 LKQFAPFGPRNMTPTFVSRNVSTTGFVKTLGEDGLHLKTNL-TQSETVFTAIGFGLGDKK 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + ++ + + N W G+ QL + D Sbjct: 528 N----LMKKDEKFDIVYTIEENEWDGNITLQLNLKDIK 561 >gi|282877609|ref|ZP_06286424.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccalis ATCC 35310] gi|281300181|gb|EFA92535.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccalis ATCC 35310] Length = 578 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 172/585 (29%), Positives = 286/585 (48%), Gaps = 22/585 (3%) Query: 16 FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W E A + +K I ++A++L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYVPPTSEETKAANELGEKLNISPLLAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDLAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + D + YA + GID I+ DHH PA A Sbjct: 122 GYGVSKKGIDHAQETGVKLIIILDCGIKAIDEIAYAKSLGIDFIICDHHVPDEVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HL GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDSYPFKHLSGCGVGFKFMQAFAK-----NNSIPFSRLIPLLDFCAVSISADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+ NR GL + + GLKA+I+ N++ I+ ++ + IGP INA GR+ Sbjct: 237 VPVTDENRILAFHGLKQLNQNPSVGLKAIIDICNLNGRDISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A +D N+ R+ ++ M E+A ++ + + + S IV Sbjct: 297 NGKESVDLLVEKDFASALRQAKHIDEYNEQRKDIDKQMTEEA-NLIVAKLESQKHHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLTRDGE-FATGSARSVTGFDVYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +LV GGH AAGLT+ + + + FQK+ + T P+ ID +++ + L Sbjct: 413 LLVNFGGHTYAAGLTLRWDDIKKFRERFQKYVDLHIEPEQTEPILDIDAIIDFKDITKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFA-FPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GN P+F + +VV H+++ + S + IAF Sbjct: 473 HADLKKFSPFGPGNSKPLFGTLGVFDYGTSKVVGREQEHIKLELVDSKSSNIVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + ++ RG + L N ++ QL++ D P+E Sbjct: 533 SAS--ARYIKSKRG--FDIAYTLEDNVFK-RNAVQLQIEDIRPIE 572 >gi|167462059|ref|ZP_02327148.1| YrvE [Paenibacillus larvae subsp. larvae BRL-230010] Length = 813 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 185/595 (31%), Positives = 290/595 (48%), Gaps = 30/595 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72 S RW G + + + H + + AR+L R ++ + A+ FL+ S + DP Sbjct: 4 SKARWQ--TGCAESSVVQKLAEAHHLDTLTARLLALRGITTPEAAESFLH-SRQDGFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D KA RI A+ + E I I+GDYD DG S +L+M L + YIP R+ Sbjct: 61 FLMKDMKKAVDRIRLAVEHKEFIRIYGDYDADGVTSTSLVMFLLRKIKARFDYYIPHRVR 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N +EK +G LIITVD G ++ + + Y G+DVIV DHH+ Sbjct: 121 EGYGLNRQAVEKAAEDGVDLIITVDTGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 ALVNP + D HL GV F + + + + LL+LVA+ TV D Sbjct: 181 ALVNPKQADCPYPFKHLAGVGVAFKLAHALLDRVPE-----------ELLELVAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 ++P G NR V GL ++ PG++AL++ I +T+ +LG+ +GP +NA GR+ Sbjct: 230 LMPFHGENRTIVKMGLKRMQQSAFPGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G +N LLI+ DS LA LD LNQ R+ + + E+A A Q + Sbjct: 290 GSANNSVELLITGDSGRANELAQLLDELNQERQRIVREINEEALAIAAEQVQKGNT--FL 347 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV W+ G++G++A+++ E + RP+ S E G GS RSIE FD+ + ++ E Sbjct: 348 VVAKPDWNEGVIGIVASKIVETYYRPTIVFSMNDESGLAKGSARSIESFDMYENLTACRE 407 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L GGH AAG+T+++ + L A ++ PV + D + V + Sbjct: 408 --LLEHFGGHRSAAGMTIKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAACHLKDVPL 465 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET---LQAIA 545 I+ L+ P+GA NP+P F N +L +R++ H+++ E+ ++A+ Sbjct: 466 GWIEQLQKLEPFGASNPSPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGESTVQIEALG 525 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 F + S R+ V G L +N W G +R QL + D E F + Sbjct: 526 FGKAHLS----ELISPTARLDVLGELGINEWNGIRRPQLTLKDLRITEIQLFDWR 576 >gi|325570352|ref|ZP_08146167.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus ATCC 12755] gi|325156680|gb|EGC68856.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus ATCC 12755] Length = 766 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 183/591 (30%), Positives = 288/591 (48%), Gaps = 31/591 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 F WV E + Q IP+ + +L RN+ + + FL+ ++ L DP Sbjct: 5 NFHWVLPQDSEATPVFKELIQARKIPERIGALLWQRNIRTAEALDAFLSTDLQYLH-DPF 63 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D DKA RI +AI N E+I+I+GDYD DG S ++ L A Y+P+R D Sbjct: 64 LFHDMDKAVERIHEAILNGERILIYGDYDADGITSTTVLKETLELLGAEAEYYLPNRFSD 123 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN ++ + I G QLIITVD G + ++A+ YA QG+DVIV DHH++ +E A+A Sbjct: 124 GYGPNITVYKDKIAAGTQLIITVDNGVSGHEAIAYAQGQGVDVIVTDHHELPAELPEAFA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + G L GV F V + + + LLDLVA+ T+ D+ Sbjct: 184 IVHPRHPEGNYPFGDLAGVGVAFKVACALLEEVP-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + ++ GL L+ + ++G+ +GP +NA GR+ Sbjct: 233 VSLTDENRLLVSNGLKMIQQTDRLGLNELLTVSGLKKRTVNETDIGFAVGPRLNAIGRLE 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N RLL + D +E LA LD +NQ R+ ++++A+ K+ V + Sbjct: 293 DPNPAVRLLTTFDEEEAVTLAKTLDTINQQRKTFVEEIMKEAQEKI------DPANHVHL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V GD WH G++G++A R+ + G+P ++ +E+G GSGRS+ ++ A + Sbjct: 347 VVGDNWHEGVLGIVAGRIMQSTGQPVIVLTKKENGLAKGSGRSVAALNL--FEMLATMKD 404 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GL++ + L ++ L ID L + V+I Sbjct: 405 MFTSFGGHHAAVGLSIPIDHLDMLQAQMNRYVEENGIDLSQGIPLAIDEELPLAEVSINF 464 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 I+ L P+G NP P F F N Q+ R + HL++ + + L I F Sbjct: 465 IESLNVLAPFGTDNPLPKFLFSNLSTQNARQIGTENQHLKLVMTDESNLQLDVIGFG--- 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 G+ ++ R+ + G L +N W G+K+ QL + D + VEG F + Sbjct: 522 --FGKDSVEFENDRLSIVGQLSINEWNGNKKPQLMLDDFA-VEGLQLFDYR 569 >gi|261418404|ref|YP_003252086.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. Y412MC61] gi|319767637|ref|YP_004133138.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. Y412MC52] gi|261374861|gb|ACX77604.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. Y412MC61] gi|317112503|gb|ADU94995.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. Y412MC52] Length = 788 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 287/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + ++ + ++AR+LV R V + A FLNP + DP +L Sbjct: 7 RWEVERLDE--QAVRRLAEEAGVTPLLARLLVRRGVRTASEAVAFLNP-LEQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A +R+ +AI E+++++GDYD DG S ++M+ L + YIP+R +GY Sbjct: 64 DGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G +I+TVD G + + A G+DVIV DHH+ A+A++ Sbjct: 124 GPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGMDVIVTDHHEPGPVLPEAHAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLDLVA+ T+ D+VP Sbjct: 184 HPKQPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L+G NR +V GL R GL+AL + I + I + +G++I P +NA GR+G + Sbjct: 233 LVGENRLFVAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL++DD E LA ++D LN+ R+ + + + E+A V Q + V+VV Sbjct: 293 DPAVALLMTDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHR-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ G+VG++A++L E+F RP+ +S E G GS RSI GFD+ S + + Sbjct: 352 GEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDL--FASLSQCRDL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A + TP ID + + + ++ Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLSAA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 LE P+G GNP P+ ++++R V H++ F SQD + AI F + Sbjct: 470 RGLERFAPFGVGNPRPLVLIEGASVETMRRVGANGAHMKAVF-SQDGAAIDAIGFGLG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + R+ G L VN W G + QL + D + + F + Sbjct: 527 --PLCEEIAPDARISAVGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVR 573 >gi|260591573|ref|ZP_05857031.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella veroralis F0319] gi|260536482|gb|EEX19099.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella veroralis F0319] Length = 573 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 161/585 (27%), Positives = 278/585 (47%), Gaps = 22/585 (3%) Query: 16 FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W E N A + K + +A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYTPPTTEQSNAAKELGDKLGMSPTLASLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ + E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA GID I+ DHH PA A Sbjct: 122 GYGVSKKGIDYAAETGVKLIIILDCGIKAIEEITYAKQLGIDFIICDHHVPDETMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD LC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDSYPFKSLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+I NR GL + + GLKA+I+ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVIDENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ + A +D N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKKSVDLLVEREYSLALNQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ ++ GS RS+ GFD+ + Sbjct: 356 LYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT++ + FQ + + + ID V++ + L Sbjct: 413 LLLNFGGHTYAAGLTMKWSDVKEFRKRFQAYVEEHIEPEQREAILDIDAVIDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G NP P+F + + +VV H+++ + + + IAF Sbjct: 473 HSDLKRFAPFGPANPKPIFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTE 572 >gi|261880324|ref|ZP_06006751.1| recombination protein J [Prevotella bergensis DSM 17361] gi|270333014|gb|EFA43800.1| recombination protein J [Prevotella bergensis DSM 17361] Length = 584 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 168/587 (28%), Positives = 280/587 (47%), Gaps = 22/587 (3%) Query: 16 FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W I +A + +K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWKYDPPTSNNIQQAKELGEKLNINPILAGLLIKRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+IM++GDYDVDG +VAL+ +FL N YIP R + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVYKFLQQFYSNIEYYIPSRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ +LII +DCG + + + YA + GID I+ DHH E PA A Sbjct: 122 GYGVSKKGIDYAKENDVKLIIILDCGIKAIEEIGYAKSIGIDFIICDHHVPDEEIPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD L GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRTDDTYPFKQLSGCGVGFKFMQAFAK-----NNGIPFSRLIPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLK++I+ +S I+ ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSVGLKSIIDICGLSGREISMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A ++D N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKESVELLVEKDFSMALEEARRIDEYNEQRKDIDKQMTEEA-NQIVAKLESQEHHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G+VG++A+RL E + RP+ ++ + GS RS+ GFDI + Sbjct: 356 LYDEHWKKGVVGIVASRLTEMYFRPTVVLT-RDGDFATGSARSVMGFDIYSAIKHC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+ GGH AAGLT++ + C+ F + + T ID ++ ++ L Sbjct: 413 ILINFGGHTYAAGLTLKWEDIHEFCNRFHNYVEEHIEPEQTEAYLDIDAEIDFKDISKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRV 548 + L+ P+G GN PVF + +VV H+++ +S T + IAF Sbjct: 473 HNDLKRFSPFGPGNTKPVFCTKGVYDYGTSKVVGRFQEHIKLELVDSNSSTVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N ++ + QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIENNVFK-RNQVQLQIEDIRPAESE 574 >gi|218439815|ref|YP_002378144.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7424] gi|218172543|gb|ACK71276.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7424] Length = 654 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 166/583 (28%), Positives = 283/583 (48%), Gaps = 20/583 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 + RW+ I + Q + ++A+VLVNR ++ A+ +L P L+P Sbjct: 3 LPNQRWIISSPDPKI--VEQLVQTTGLLPLMAQVLVNREINTPELAQVYLEPE-SQLLPQ 59 Query: 72 P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P D + + AI + +KI+I GDYD DG S AL++R L H + + IP R Sbjct: 60 PLEEFPDLGVSVELLQDAIASQDKIVICGDYDADGMTSTALLLRALKHLGADVDYAIPSR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N ++E + G LI+TVD G ++Y+ + A + G+ VI+ DHH + + P Sbjct: 120 MKEGYGINTRIVEDCASSGVGLILTVDNGISAYEPIARAIDLGLSVIITDHHDLPEKLPP 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP L + S L GV +++ V + L + LL+L L T+ Sbjct: 180 ADAILNPKLLPESSPYRGLAGVGVAYILAVTTAQNLGLLKGLT-----DQLLELFTLGTI 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307 D+ PL+G+NR ++ +GL + G++ALI+ + +++G+ +GP INA Sbjct: 235 ADLAPLVGVNRRWLKRGLRKLPKSQLAGIQALIQMAGVSEEQKQLQPDDIGFKLGPRINA 294 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ L LL +D+ AM+ + +NQ R+ + + E+A + T + QQ Sbjct: 295 IGRIGDPQLVIELLTTDEEGLALERAMQCEQINQKRQQLCKKIEEEAINLIETLPVNWQQ 354 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+V+ WH G++G++A+RL E++G P F ++EE+ G + + + Sbjct: 355 DRVLVIVQPHWHHGVIGIVASRLVERYGAPVFIGTYEEEEPEKIRGSARGIEEFHVFEAL 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +L K GGH A G ++ N + +FAH + P+ KID + Sbjct: 415 EFCDDLLGKYGGHKAAGGFSLPIQNLEAFKERLSRFAHQCLKPEYLKPLIKIDAQTDFKQ 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 + L +++ P+G GN PVF N KL R+V HL++ +D ++AIA+R Sbjct: 475 LTPYLYQQIDNLQPWGIGNDFPVFWTANVKLIEQRIVGQKHLKLVLAQEDGTEIKAIAWR 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L N+W G+ +L ++ Sbjct: 535 WADYF-------PLPTCLDIAYKLKENHWNGNTTIELEIIGIR 570 >gi|189425065|ref|YP_001952242.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter lovleyi SZ] gi|189421324|gb|ACD95722.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter lovleyi SZ] Length = 586 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 174/601 (28%), Positives = 293/601 (48%), Gaps = 17/601 (2%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKD 59 M A G+ S +W+ Q A++ + + A +L +R ++ + Sbjct: 1 MKSPASRGISVSTMHKQWILK--QTDPATVAALSAATGLSAVTASILSSRGLTEPEQVAS 58 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FL+P++ ++ DP ++ ++A R+V A E + I+GDYDVDG ++ AL++ L Sbjct: 59 FLSPTLAAML-DPFLMAGMEQAVVRLVAARAAKETVCIYGDYDVDGISATALLVSGLRAM 117 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 +N +IP+R+ DGYG N + G +L I+VDCG T+ + + G+D+I+ Sbjct: 118 GLNVTYHIPNRMEDGYGLNGDALRLIKERGIELAISVDCGVTAIEEAILCRSIGLDLIIT 177 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDL 238 DHHQ + A A++NP+R D L GV F +LV + LR N DL Sbjct: 178 DHHQPLDQLPDAIAVINPHRRDCSYPFKGLAGVGVAFNLLVALRSRLRDQGAFGDNGPDL 237 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 LDLVAL T+ D+VPL+ NR GL GL AL + I +++ +G Sbjct: 238 RQWLDLVALGTIADLVPLVEQNRLLTSAGLQRMGDGCRIGLAALKQVAGIKGEVSSGQVG 297 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + + P +NA GR+ + G LL+++D Q+ L+ +LD N RR +E + ++A A++ Sbjct: 298 FQLAPRLNAVGRLESAVPGVELLLTEDPQQAAALSAELDGANLERRQVERRIFDEAIAQI 357 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 Q +Q + IV+ WH G+VG++A+RL E++ RP+ ++ +D G GSGRSI G Sbjct: 358 EAQG-GLQDRNSIVLSSPDWHQGVVGIVASRLVERYYRPTLLVAERDDASGKGSGRSISG 416 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 F + + + L + GGH AAG+TVE D F++ A + P Sbjct: 417 FHLLEALHEC--ADFLQRYGGHRAAAGVTVEPGQMAAFADAFEQAALTRLGDQELIPELV 474 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 +D + + AL+ L+ GP+G GN PV ++ R HL + + +D Sbjct: 475 LDVEVAPRDLTSALVAELQRLGPFGMGNTTPVLLLRQMQVLDCRCFGEGHLNLRLQ-RDG 533 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 +A+ + + + + + + + W G ++ +L + D E +H A Sbjct: 534 LQFKALGWGMAERTVPAL--------VDLACTVKLETWNGREQLRLELKDFRTSEDYHAA 585 Query: 599 K 599 + Sbjct: 586 Q 586 >gi|189184334|ref|YP_001938119.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi str. Ikeda] gi|189181105|dbj|BAG40885.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi str. Ikeda] Length = 587 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 230/586 (39%), Positives = 335/586 (57%), Gaps = 14/586 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 E S+ G W E I I QKH + D +A++L +N+ ++ FL P+I+ + Sbjct: 6 EQSVLGNYWNKTEFDEYI--IETIRQKHGVSDFLAKLLYAQNIDLEQISYFLTPTIKEAL 63 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D DKA R++ AI E I IFGDYDVDGA S AL+ + + +YIP+ Sbjct: 64 PDPFHLLDMDKAVNRVIHAINQQEHICIFGDYDVDGATSSALLKNYFCELGIEPIIYIPE 123 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYGP+ S ++K + G LIITVDCG+++Y+AL A Q IDVIVIDHH + Sbjct: 124 RLTEGYGPSVSAIKKLKSAGISLIITVDCGTSAYEALAEAKAQHIDVIVIDHHLSVEQLP 183 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247 A A++NPNRLD+ S +L A GV FL LV + LR+ N L+ LDLVAL Sbjct: 184 DAVAIINPNRLDETSKYNYLAAVGVSFLFLVALRSALRKLNYFADKSEPSLVKYLDLVAL 243 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDV+ LIGLNRA+V KGL + + N G+KAL LG+++GP INA Sbjct: 244 GTVCDVMALIGLNRAFVTKGLEIMAQHQNVGIKALGYLSEAEFSSDCYYLGFVLGPRINA 303 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIG+S+LGS+LL + E +A +L+ N R+L+E MLE+A Q Sbjct: 304 GGRIGKSDLGSKLLSTKCQIEAYNIASELENYNSERKLIEKVMLEEAVTIAREQA----D 359 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 +VIVV +WHPG++G++A+RLK+ F +P IS ++ G S RSI+G DIG ++ Sbjct: 360 NNVIVVANHKWHPGVIGIIASRLKDLFHKPIVVISLDDT-LGRASCRSIKGIDIGSKIAE 418 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A +G+L+ GGGHAMAAG T++R G L +F + + L + L+ ++ Sbjct: 419 AKLKGLLITGGGHAMAAGFTIKRDLIGDLKNFLNQELALDMKNLTGHNIRNYAIDLSIAS 478 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS----ETLQA 543 +NI + ++ P+G GNP P+F N KL+ ++ H+ ++ +T +A Sbjct: 479 LNINTVHEIQKLAPFGNGNPEPIFKLTNIKLKYASQLSNKHVHCVLSEWENINAVKTTKA 538 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 IAF T L + L+ + K + + G++ VN WRG + Q ++D Sbjct: 539 IAFN-PRTQLFDALLSTYTKPIDLIGNIKVNRWRGREEIQFVIMDL 583 >gi|296132723|ref|YP_003639970.1| single-stranded-DNA-specific exonuclease RecJ [Thermincola sp. JR] gi|296031301|gb|ADG82069.1| single-stranded-DNA-specific exonuclease RecJ [Thermincola potens JR] Length = 1233 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 174/579 (30%), Positives = 277/579 (47%), Gaps = 23/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W I + ++ I I A++L NR + S++ A+ FL S+ L DPL Sbjct: 6 KIWSFHNNNTFIQEL--LARRLGISKITAQILANRGICSVEEARTFLFGSLEDLY-DPLQ 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + ++A +RI QAI +++I+++GDYDVDG S L++ L + YIP R+ +G Sbjct: 63 MHGMEEAVQRIKQAIKENQRILVYGDYDVDGITSTVLLLDTLEFLGAACDFYIPHRLTEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + ++ +G L+ITVDCG +S D + +A + G+++I+ DHH+ AYA+ Sbjct: 123 YGLNINSLKTIKEQGFNLVITVDCGISSADEVSWARDNGLEIIITDHHEPPEHIPQAYAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + L GV F + + R ++ VP LLDLVAL TV D+V Sbjct: 183 INPKQAWCTYPFKELAGVGVAFKLAQALLRAHEKEYLVP------KLLDLVALGTVADMV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL+G NR +GL + GL ALIE I +E + + + P +NA GRI Sbjct: 237 PLVGENRITTKQGLQLINAGHREGLAALIEVAGLADQSIDSEQIAFALAPRLNAVGRIDH 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G RLL + + +A LD N+ R+ +E+ + +A + + + + +V+ Sbjct: 297 AAKGVRLLREKNREMAVSIAKALDRANKERQAIENLIFTEAVEII--ESNSLLDNKALVL 354 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH GIVG++A++L ++ RP +S + GS RSI GF++ + E Sbjct: 355 ARPDWHLGIVGIVASKLVNRYCRPVILLSVNGE-VAKGSARSIPGFNLFAALQSC--EAF 411 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGH+ AAGLT+ + F + + A IDG ++ V L Sbjct: 412 LKKYGGHSQAAGLTLNVDDISAFTAAFNEIVDQQITAEHMAEALPIDGEISFKDVTFDLY 471 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + L + P+G GNP P+FA + R V HL+M ++ ++AI F + Sbjct: 472 NQLVALEPFGFGNPTPLFACRQADIIDCRKVGSDGKHLKMKIMNE-KLLMEAIGFNLSAC 530 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + L N W G QL V Sbjct: 531 QNS----IDFADKIDIVFELKKNDWNGRSNLQLNVRAIK 565 >gi|289423185|ref|ZP_06425000.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus anaerobius 653-L] gi|289156516|gb|EFD05166.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus anaerobius 653-L] Length = 815 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 184/586 (31%), Positives = 306/586 (52%), Gaps = 23/586 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ G ++ +T+K I D + ++L+NR + + + +++P + L DP + Sbjct: 2 KNWIVKSL--GRSKGNEVTKKFNINDNIGQILINRGIETEEQLDLYMHPDLTSLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D+A RI +AI N+EKI IFGDYDVDG +S +++ + YIP+R+ +G Sbjct: 59 LKDMDRAVDRIKRAISNNEKICIFGDYDVDGVSSTSILCLYFESIGYQVEFYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + G LII+VDCG TS + ++ A GIDVI+ DHH+ + + AYA+ Sbjct: 119 YGLNDEAIRQIGQMGTDLIISVDCGITSVNEVETARKLGIDVIITDHHEPQEKLPQAYAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D +C GV F ++ + ++ L++VALAT+CDV+ Sbjct: 179 IDPKREDCRYPFKGICGCGVAFKLIHAL------SGDRDFYNNINRYLEIVALATICDVM 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313 P++ NR V GL + R N G++ L+ +I + + + +LG+ IGP INA GR+G Sbjct: 233 PVLDENRIIVKNGLEIMGRGNNIGMRELLGVCSILDTKMKSSHLGFAIGPRINASGRLGF 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L S D Q+ +LA +++ N+ R+++E+ +L +AEA + Q+ VIV+ Sbjct: 293 SRLGVELFTSKDPQKARLLAESMNLKNEERQMVEAKILMEAEAMIDRDS-KYQEEKVIVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH GI+G++A++L EK+ +P+ + EDG GS RSI+GFD+ K +S + + Sbjct: 352 AGHGWHHGIIGIVASKLTEKYYKPTVLL-CIEDGVATGSARSIKGFDLFKAMSEC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 ++K GGH AAGLT+ N L + A + I+ L A+++ L+ Sbjct: 409 MMKFGGHEQAAGLTMAEGNIQALRERINAIADYELKKEDLIENINIEFELEEDAISLDLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 L P+G NP P F ++K++ ++ HL+++ E + T I F + Sbjct: 469 KDLHILEPFGIKNPTPYFMVRDYKVKKAYLIGKDKNHLKLSIEKE--YTYDCIGFNMGHL 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 S R+ + L N ++G Q+ + D + Sbjct: 527 ----MDKFSVDDRVDIVFQLDENTFKGRTTVQMLIKDIRLSKPDKI 568 >gi|167646973|ref|YP_001684636.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter sp. K31] gi|167349403|gb|ABZ72138.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter sp. K31] Length = 605 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 226/589 (38%), Positives = 338/589 (57%), Gaps = 8/589 (1%) Query: 6 FLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 FL V S+SG W G + R+ Q H + + +AR L +R V +D A+ +L P++ Sbjct: 14 FLDVSRSLSGRAWRERPGDAAVARSH--QQLHGLSEPLARALASRGVGVDDAEHYLRPTL 71 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 + L PDP TD D+AA ++ A+ + M+F DYDVDGA S A ++R+ + V + Sbjct: 72 KALFPDPSSFTDMDRAAEILIDALESGRSTMVFADYDVDGATSAAQLVRWFRYMGVELPI 131 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 YIPDR+ +GYGP+P+ + + GA L++T+DCG+ +YDA+ A G++V+VIDHH ++ Sbjct: 132 YIPDRLTEGYGPSPAAFKTIRDTGADLVVTLDCGAAAYDAIASAATIGLEVVVIDHHLMR 191 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLL 242 + A A+VNPNR SGQG L AAGV F++L + R R+ DL L Sbjct: 192 EDPPAAAAVVNPNRPGCQSGQGVLAAAGVTFVLLAALNREARRRGLFTDERPQPDLRQWL 251 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVA+ VCDV L+G NRA GL GNPGLKAL E S P + + G+++G Sbjct: 252 DLVAMGEVCDVTQLVGFNRALTTLGLRTMSSWGNPGLKALFEVGKGSGPASVFHAGFILG 311 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGRIG S+LG+RLL +DD +E MLA +LD LN R+ +E+ ++E+A A + Sbjct: 312 PRINAGGRIGRSDLGARLLSTDDPEEARMLAEELDGLNTERKAVEAGVVEEAAAVLERGS 371 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDI 421 + A VIVV G+ WHPG++G++A RL+E++ +P I G GSGRS G ++ Sbjct: 372 NFNPDAPVIVVAGEGWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQPGVNL 431 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G + A E G+L+ GGGHAMAAGL++ + F ++ + + ID Sbjct: 432 GAAIQAAFEAGLLMAGGGHAMAAGLSIRPDSIPEFRAFLEERLAGEM-EAVGVEGVDIDA 490 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 ++ A N AL + P+G GNP P+FA + + + + H+++ + + Sbjct: 491 LVQPRAANRALWTEFQQLAPFGPGNPEPMFALAGVRPERMMAMKGGHVRVDLVGPSGDRI 550 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AI++R TPLG+ LM G +HV G L + + G + QL + DA+ Sbjct: 551 KAISWRSVETPLGQRLMAGGGA-LHVVGRLKPDDYMGREGVQLEIEDAA 598 >gi|226311467|ref|YP_002771361.1| hypothetical protein BBR47_18800 [Brevibacillus brevis NBRC 100599] gi|226094415|dbj|BAH42857.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 782 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 187/589 (31%), Positives = 285/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E A +I + +V+++LV R + A+DFL L DP +L Sbjct: 7 RWKLATYDE--QLAASIAADCQLTPLVSKLLVIRGIDTSQKARDFLQAG-PELFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +++ RI QAI E I I+GDYD DG +S +LM+ L + YIP+R +GY Sbjct: 64 DGMEQSVHRIQQAIQRQEPICIYGDYDADGVSSTSLMVHLLRQLGAVFDYYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + + G +LIITVD G ++ + + YA G+DVIV DHH+ + A+A++ Sbjct: 124 GLHKDALAHLHQSGYKLIITVDTGISAVEQVAYANQLGLDVIVTDHHEPPAVIPEAFAVI 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP + L GV F V + + L L DL AL T+ D+VP Sbjct: 184 NPKKPGCSYPFDMLAGVGVAFKVGHALLKE-----------PPLHLADLAALGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+ NR GL N GL+ALI + ++A ++G+ +GP +NA GR+ + Sbjct: 233 LVDENRILARAGLKRLNHTRNLGLQALIRVCGLADTELSAGHVGFALGPRLNASGRLETA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +LL + D E E A LD LN+ R+ + +AM E+A V Q +V+V+ Sbjct: 293 ESAVKLLTTSDMDEAEKCAQALDDLNRERQEIVAAMTEEAVQMVNELYPPDQN-NVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+ G+VG++A+RL E F RP+ + E G GS RSI GFD+ + ++ E Sbjct: 352 KEGWNVGVVGIVASRLVELFYRPTIVLGIDPEKGTAKGSARSIAGFDMYEGLTACKEW-- 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ N L + A + + TP+ K+D ++ +++ Sbjct: 410 LPHYGGHTMAAGMTLPVENLDLLRQKLNELAGEWLSSEDFTPMTKVDVAMSMEEISLTAA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + LE PYG GNP P+ + Q +R + HL+ T ++ +L AI F Sbjct: 470 EQLEQLAPYGMGNPTPLVLLEEVETQGMRTIGRDDNHLKCTL-NKAGTSLDAIGFNWAHV 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + R HV G L VN W G+++ QL + D S F + Sbjct: 529 ----TKRVTPKARFHVLGELSVNEWNGNRKPQLTIRDLSVGHQQVFDWR 573 >gi|148284293|ref|YP_001248383.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi str. Boryong] gi|146739732|emb|CAM79563.1| single-stranded-DNA-specific exonuclease [Orientia tsutsugamushi str. Boryong] Length = 586 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 229/586 (39%), Positives = 334/586 (56%), Gaps = 14/586 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 E S+ G W E I I QKH + D +A++L +N+ ++ FL P+I+ + Sbjct: 6 EKSVLGNYWNKTEFDEYI--IETIRQKHGVSDFLAKLLYAQNIDLEQISYFLTPTIKDAL 63 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D DKA R++ AI E I IFGDYDVDGA S AL+ + + +YIP+ Sbjct: 64 PDPFHLLDMDKAVNRVIHAINQQEHICIFGDYDVDGATSSALLKNYFCELGIEPIIYIPE 123 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYGP+ S ++K + G LIITVDCG+++Y+AL A Q IDVIVIDHH + Sbjct: 124 RLTEGYGPSVSAIKKLKSAGISLIITVDCGTSAYEALAEAKAQHIDVIVIDHHLSVEQLP 183 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247 A A++NPNRLD+ S +L A GV FL LV + LR+ + L+ LDLVAL Sbjct: 184 DAVAIINPNRLDETSKYNYLAAVGVSFLFLVALRSALRKLHYFTDKSEPSLVKYLDLVAL 243 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDV+ LIGLNRA+V KGL + + N G+KAL LG+++GP INA Sbjct: 244 GTVCDVMALIGLNRAFVAKGLEIMAQHQNVGIKALGYMSEAEFSSDCYYLGFVLGPRINA 303 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIG+S+LGS+LL + E +A +L+ N R+L+E MLE+A Q Sbjct: 304 GGRIGKSDLGSKLLSTKCQIEAYNIASELENYNSERKLIEKVMLEEAVTIAREQA----D 359 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 +VIVV +WHPG++G++A+RLK+ F +P IS ++ G S RSI+G DIG ++ Sbjct: 360 NNVIVVANHKWHPGVIGIIASRLKDLFHKPIVVISLDDT-LGRASCRSIKGIDIGSKIAE 418 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A +G+L+ GGGHAMAAG T++R G L +F + + L + L+ ++ Sbjct: 419 AKLKGLLITGGGHAMAAGFTIKRDLIGDLKNFLNQELALDIKNLTGHNIRNYAIDLSIAS 478 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS----ETLQA 543 +NI + ++ P+G GNP P+F N KL+ ++ H+ + +T +A Sbjct: 479 LNINTVHEIQKLAPFGNGNPEPIFKLTNIKLKYASQLSNKHVHCVLSEWGNINAVKTTKA 538 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 IAF T L + L+ + K + + G++ VN WRG + Q ++D Sbjct: 539 IAFN-PRTQLFDALLSTYTKPIDIIGNIKVNRWRGREEIQFAIMDL 583 >gi|85859325|ref|YP_461527.1| single-stranded DNA-specific exonuclease [Syntrophus aciditrophicus SB] gi|85722416|gb|ABC77359.1| single-stranded DNA-specific exonuclease [Syntrophus aciditrophicus SB] Length = 586 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 176/577 (30%), Positives = 296/577 (51%), Gaps = 17/577 (2%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 WV + ++ I I++ +L +R++ + D A+ +L PS+ L +P ++ Sbjct: 18 NWVM--SDVNKEAQYLLVKELGIHWIMSSILASRDIQTPDDARKYLYPSLHDLH-NPFLM 74 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D R++QA+Y EKI+++GDYD DG SVA++++FL + + YIPDRI +GY Sbjct: 75 KDMQLGVNRLIQAVYQGEKIVVYGDYDADGITSVAVLVKFLRDIQADVSYYIPDRIDEGY 134 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +++ + A LIITVDCG + D + YA + G+D I++DHH+V A A + Sbjct: 135 GLNRKAIDRIKEKSASLIITVDCGISDCDEILYARSLGLDTIILDHHEVSDSLPTAVASI 194 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDV 253 NP R D HL A G+VF L+ + LR++ +L LDLVAL T+ D+ Sbjct: 195 NPKRPDCPFPLKHLAAVGIVFNFLIALRGNLRKEGFWHGKPYPNLKEYLDLVALGTIGDI 254 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 P++ NR +V GL + G++AL E + + + E + + P INA GR+G Sbjct: 255 CPMVDENRIFVRVGLELLTEGKRVGIRALKEICGVDTQAVDTEKASFSLIPRINAAGRVG 314 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL++DD + LA+KLD N+ RR +E +LE+ + D + ++ V Sbjct: 315 LPDDAVELLLADDMGKARDLAVKLDSYNRRRRALEKNILEEIIEDLEKTISDRNRTAL-V 373 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + ++WHPG++G++A+++ +++ RP+ IS ++ G G GSGRSI F+I + + E Sbjct: 374 MASEKWHPGVIGIVASKIADRYDRPAILISLKD-GIGKGSGRSIANFNIYQGLREC--ED 430 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L+ GGH AAG+++ + + + + V I+ + + + L Sbjct: 431 YLISYGGHRYAAGISIMEEDIEQFAETLDEIVRENVLQSDFISATFIEAQCHLNDITHEL 490 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 + +E P+G+ NP PV N S VV HL+M S+ + I F Sbjct: 491 LAQMELLAPFGSKNPEPVLCVRNVNAFSPAVVGNNHLRMRV-SEAGVSRNTIWFSQ---- 545 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 G F+ + + + +N W G+ QL++ D Sbjct: 546 -GHFIRELNDSCLDIAFTPQINTWNGASDIQLKMKDI 581 >gi|300728171|ref|ZP_07061542.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bryantii B14] gi|299774597|gb|EFI71218.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bryantii B14] Length = 573 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 170/585 (29%), Positives = 282/585 (48%), Gaps = 22/585 (3%) Query: 16 FRWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W E A A+ +K + I+A++L+ R +S + AK F P + L+ +P Sbjct: 3 FKWKYTTPTSEQDEAAKALGEKLNMSTILAQLLIRRGISTESAAKRFFRPQLGDLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIEYYIPDRYNE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA + GID I+ DHH A A Sbjct: 122 GYGVSKQGIDYAYENGVKLIIILDCGIKAIEEIAYAKSLGIDFIICDHHVPDDVMPEAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD A+A D+ Sbjct: 182 ILNPKRTDDSFPFKHLCGCGVGFKFMQGWAK-----NNGIPFSQLIPLLDFCAVAIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLKA+I+ ++ IT ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSVGLKAIIDICGLNGRNITMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D +A ++ N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKESVDLLVEKDFSSAIQMAKHINEYNEQRKDIDKQMTEEA-NQIVGRLESQKHQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ I+ + GS RS+ GFDI + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVITKFGE-FATGSARSVTGFDIYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT++ + FQ++ + + ID VL+ + L Sbjct: 413 LLINFGGHTYAAGLTMKWEDVKEFRKRFQEYVESHIEPEQIEATLDIDAVLDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GNP P+F + +VV H+++ + S + IAF Sbjct: 473 HTDLKKFAPFGPGNPKPLFCTIGVYDYGTSKVVGRQQEHIKLELVDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ + QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFK-KNQVQLQIEDIRPTE 572 >gi|149369293|ref|ZP_01889145.1| single-strand DNA specific exonuclease [unidentified eubacterium SCB49] gi|149356720|gb|EDM45275.1| single-strand DNA specific exonuclease [unidentified eubacterium SCB49] Length = 562 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 168/578 (29%), Positives = 278/578 (48%), Gaps = 22/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW L + + +++ + + +A +L R ++ D AK F PS++ L DP ++ Sbjct: 2 RWNILP-KSNSEKTQELSKALGVDNTIANLLFQRGITTFDEAKYFFRPSLKDLH-DPYLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A RI +AI N E I+++GDYDVDG SVALM +L N YIPDR +GY Sbjct: 60 EDMLVAVERIEKAIENKENILVYGDYDVDGTTSVALMSSYLRTYYPNIATYIPDRYEEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YA+ + ID I+ DHH+ E A A++ Sbjct: 120 GVSYKGIDFAADNNFSLIIALDCGVKAIDKVAYASEKNIDFIICDHHRPGPELPKAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + Q L + L VA A D+VP Sbjct: 180 DPKREDCAYPYKELCGCGVGFKLIQALGARRGQTIDDLLLYLDL-----VATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL V G KA+++++ +T ++ ++IGP INA GR+ N Sbjct: 235 ITGENRILAYYGLKVINSNPRTGYKAILKQIK-KEVLTITDVVFIIGPRINAAGRMKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL+ D + + A +++ N +RR + + ++A A++ + + ++ VV Sbjct: 294 HAVTLLVETDINKAAIWAAEIEQFNLDRREADKRITKEALAQI--KTNKEEERKTTVVYQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A+RL E + RP+ + D K S RS+ GFD+ + E + Sbjct: 352 KDWHKGVIGIVASRLTETYYRPTLVFTKSGD-KLAASARSVIGFDVYNALQECSEF--IT 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+E NF + F++ + + P + + + + + Sbjct: 409 QFGGHKYAAGLTLEEKNFENFKNKFEEVVSRTIDPKLLQPELSVTMEIELADITPKFYRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G GNP+PVF N + + V HL++T + S+ + I F + Sbjct: 469 LKQFAPFGPGNPSPVFMTQNLSETGYGKCVGEDKTHLRITVKQGMSQYV-CIGFGLGDKK 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G+ + N W+G+ QLR+ D Sbjct: 528 A----IACSGRPFKAAYVIDENEWQGNVSLQLRLKDIK 561 >gi|149184834|ref|ZP_01863152.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. SD-21] gi|148832154|gb|EDL50587.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. SD-21] Length = 594 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 232/592 (39%), Positives = 347/592 (58%), Gaps = 18/592 (3%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKH--AIPDIVARVLVNRNVSIDYAKDFLNPS 64 GV S++G W G + Q H IV ++L+ R V+ D + L+P+ Sbjct: 10 FGVSQSLTGRAWRWRGGNMD------LGQGHFGDADAIVRQILLARGVAQDDLQRHLSPT 63 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R +PDP +D + AA RI QA+ ++E+I I+GDYDVDGA S AL++R L V A+ Sbjct: 64 LRDFLPDPSEFSDMETAADRIAQAVLSNERITIYGDYDVDGATSSALLIRLLRDLGVEAD 123 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 YIPDR+++GYGP+ + K G+ LI+TVDCG+ +++AL A++ G+DVIV+DHH+ Sbjct: 124 YYIPDRLLEGYGPSGEALVKLAQAGSSLIVTVDCGAMAHEALAMASDAGVDVIVVDHHKC 183 Query: 185 KSEEIPAYALVNPNRLDDL---SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLL 239 E A ALVNPNRLD+ + GHL A GV FL+ + + R LR + + DL Sbjct: 184 SPELPRAAALVNPNRLDENDLAAAHGHLAAVGVAFLLAIALVRTLRGNGYFENHKEPDLF 243 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 +LLD+VAL TV DV L GLNRA+V +GL + R+ N G+ ALI+ + +LG+ Sbjct: 244 ALLDVVALGTVADVAALHGLNRAFVAQGLKIMGRRDNIGMAALIDASRLKRAPACSDLGF 303 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 +GP INAGGR+GES LG RLL + D++E + +A +L LN+ RR +E+ + + AE ++ Sbjct: 304 ALGPRINAGGRVGESTLGVRLLTTQDAEEAQQIAAQLSALNEERRAIEAEVQQAAEEQLA 363 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 Q +V VV WHPG++G++A R+KEK G+PS I+ +E+G+G GSGRSI G Sbjct: 364 AQ----HNRAVHVVAARGWHPGVIGIVAGRIKEKSGKPSLVIALDENGEGKGSGRSIPGV 419 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+G + A EEG+L+KGGGHAMAAGLTV D+ V + Sbjct: 420 DLGAAIIRAREEGLLIKGGGHAMAAGLTVAEDKLEAFSDWLDAHLEGPVSRASENREMLL 479 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 D + + L++ L+ GPYG G P P A +L +V H+++ +D Sbjct: 480 DLAVAPGGLTPDLVEALDRGGPYGVGWPGPRVAVGPVRLVKCDIVGTDHVRLIASGEDGR 539 Query: 540 TLQAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + IAFR + +G+ L+ SRG+R+ + G + ++ W + +L + DA+ Sbjct: 540 SFKGIAFRAAESDMGQALLHGSRGRRLWLAGRVKIDDWGSRPQAELHLEDAA 591 >gi|297584748|ref|YP_003700528.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus selenitireducens MLS10] gi|297143205|gb|ADH99962.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus selenitireducens MLS10] Length = 785 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 184/593 (31%), Positives = 291/593 (49%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNR-NVSIDYAKDFLNPSIRLLMPDP 72 S +W+ E + + + + +I AR V R + + FL+ R L+ DP Sbjct: 4 SKSKWLVPDWSED--QVGELAEATGLSNIAARFFVQRRKTTKEEVMSFLHMDHRSLL-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D D+A RI +AI E+I+IFGDYD DG S A+ L + YIP+R Sbjct: 61 FLLYDMDRAVDRIRRAIEKQERILIFGDYDADGVTSTAITYLTLKRLGAEVSYYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + E LIITVD G + + A G+D+I+ DHH+ A+ Sbjct: 121 EGYGPNEGAFRQAAEESVSLIITVDTGISGVHEAEVAKECGMDLIITDHHEPPPVLPDAF 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+VNP + +L AGV F + + + +D L DLVA+ T+ D Sbjct: 181 AVVNPKQEHCSYPNPNLAGAGVAFKLAHALTGEIPED-----------LFDLVAIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L G NR G+ R+ G+KAL++ S + E +G+MIGP +NA GR+ Sbjct: 230 LVSLEGENRYLAKAGIEAIRQGPRAGVKALLDIAGAEVSELNEETIGFMIGPRLNAAGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ + LLI+++ E + LA +D LN+ R+ + + E+A +V Q SVI Sbjct: 290 DSADPAAALLITENPHEAKDLAELIDGLNKERQSIVKEIAEEAIEQVEAQGV----PSVI 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +V + W+PG++G++A+RL E++ RP +SF +E + GS RSIEGFD+ S + Sbjct: 346 IVGAEGWNPGVIGIVASRLVERYYRPVIVLSFDQEKEQAKGSARSIEGFDM--FQSLSTC 403 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAGLT+ + L + + A+ + K+D ++ V + Sbjct: 404 RDILPHFGGHPMAAGLTMSLSDVEELRERLIRLANESMSDDDWIRKLKVDLPVSIEEVTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFR 547 I+ L++ PYG GNP P + + S+R + HL+++ ++ L AIAF Sbjct: 464 NAIEDLQAMAPYGIGNPAPKVMLEDVGIVSMRRIGATGDHLKLSVNNKGSGIELDAIAFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S+ + + G L +N W G ++ Q V D + F + Sbjct: 524 KGDA----ADEISKLSPLSLVGKLGINEWNGKRKPQFLVEDMQISDWQLFDFR 572 >gi|126662540|ref|ZP_01733539.1| single-strand DNA specific exonuclease [Flavobacteria bacterium BAL38] gi|126625919|gb|EAZ96608.1| single-strand DNA specific exonuclease [Flavobacteria bacterium BAL38] Length = 576 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 169/587 (28%), Positives = 281/587 (47%), Gaps = 29/587 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + + AI + +I+A +LV R V + + AK F P++ L +P ++ Sbjct: 2 RWNLKS-KPNQEKVQAIQSALQVDEIIATLLVQRGVETFEQAKTFFRPTLADLH-NPYLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI +AI N+E I++FGDYDVDG +V+L+ +L N YIPDR +GY Sbjct: 60 KDMDKAVVRIEKAISNNENILVFGDYDVDGTTAVSLVSSYLRSFYPNVATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG S D + YA + ID I+ DHH+ A A++ Sbjct: 120 GISYMGIDYAEDNDISLIIALDCGIKSIDHVNYAKAKNIDFIICDHHRPGPVLPDAIAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC GV F ++ + +N+ DL+ LDLVA A D+VP Sbjct: 180 DPKRDDCSYPYDELCGCGVGFKLVQALA-----ENRNQTIADLVLYLDLVATAIAADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---------SSPITAENLGYMIGPSIN 306 + G NR GL V PG+KAL++ V +T ++ +++ P IN Sbjct: 235 ITGENRVLAKFGLEVINSNPRPGIKALVQNVKTRANGERSEAKKVLTITDVVFIVAPRIN 294 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GRI N LL D ++ E A +++ N +R+ ++ + ++A ++ + ++ Q Sbjct: 295 AAGRIKHGNEAVALLTEYDLEQAEQFASEIEQHNSDRKELDKQITKEALLQI--EENNEQ 352 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 VV + WH G++G++A+RL E + RP+ + D K S RS++ FD+ + Sbjct: 353 NRFSTVVYQENWHKGVIGIVASRLVENYYRPTIVFTKSGD-KLAASARSVKDFDVYNALE 411 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 E L + GGH AAG+T++ N+ + F+K + + P D ++ S Sbjct: 412 ACAEH--LEQFGGHMYAAGMTLKEENYDNFKNAFEKVVQETIHPDLLMPEIAYDAEIDLS 469 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSETLQA 543 ++ L+ +L+ P+G N P+F + + HL+ + +SE A Sbjct: 470 EIHPKLMRVLKQFEPFGPENMTPLFLAKGLTDSGYAKTLGADNEHLKAFVKQGNSENFGA 529 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F + + + + + L N W+ QL++ D Sbjct: 530 IGFGLGN----KLDIVTNKNKFDAIFSLEENEWKDIITLQLQLRDIR 572 >gi|258515504|ref|YP_003191726.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum acetoxidans DSM 771] gi|257779209|gb|ACV63103.1| single-stranded-DNA-specific exonuclease RecJ [Desulfotomaculum acetoxidans DSM 771] Length = 907 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 172/579 (29%), Positives = 298/579 (51%), Gaps = 21/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W IT++ + I+A+++VNR + +++ K+F+ + L +P I Sbjct: 5 KIWHIKENDLATQSI--ITKELGVSPILAQLMVNRGLGTVEQIKNFMEYDLSSL-NNPYI 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D KA RI++A+ SEKI+I+GDYDVDG AL++ L + + N YIP RI +G Sbjct: 62 LQDMQKAVNRIIEAVNRSEKILIYGDYDVDGITGTALLVGALRRLTDHVNYYIPHRIKEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ-GIDVIVIDHHQVKSEEIPAYA 193 YG + +EK +G LIITVDCG + +A+ ++ D+I+ DHH+ A A Sbjct: 122 YGLHKEAVEKAAGQGYSLIITVDCGISGKEAVDWSVQNTKTDIIITDHHEPPPVLPAALA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R D L GV ++ +Y + LD+V L T+ DV Sbjct: 182 VINPKRKDCEYPFKELAGIGVALKLVQAVYAAANMS-----SETWKEYLDIVCLGTIADV 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 VPL+G NR V GL + GL ALI+ + IT+ +G+++ P +NA GR+G+ Sbjct: 237 VPLLGENRILVKYGLPYLTKTSKKGLIALIKASGLRGDITSGQVGFVLAPRLNAAGRLGD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL+++D + +A+ LD N+ R+ +E A L++A + + +Q+ V+V+ Sbjct: 297 PFMAVELLLTEDEAQANQIAVVLDEKNRKRKSVEDAALKEAIQMIEREI-SFKQSKVLVL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WHPG++GL+A+RL E++ +P AI+ + + +G GS RSI GF++ + + Sbjct: 356 ASEEWHPGVIGLVASRLVERYYKPVLAIALDGE-QGKGSARSIPGFNLYQALEHC--GKN 412 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG +++R + +A ++ + PV +DG+ + + + +I Sbjct: 413 LSGYGGHTMAAGFSLKRESLDNFIREINVYADEVISEDLLVPVMNLDGIFSLNDITEQVI 472 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551 +E P+G NP P+ P ++ + + V HL++ ++ + I F + Sbjct: 473 AEIEKLAPFGQANPGPLLCCPEIQVVNFKGVGKEGEHLKIKIRKENG-FIDGIGFNLASY 531 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 M + +R+++ +N W+G + LR+ D Sbjct: 532 S----EMLATAERVNLAFVPEINEWQGKRHISLRIKDIQ 566 >gi|332883950|gb|EGK04230.1| single-stranded-DNA-specific exonuclease RecJ [Dysgonomonas mossii DSM 22836] Length = 575 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 174/581 (29%), Positives = 295/581 (50%), Gaps = 21/581 (3%) Query: 16 FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 ++W L + + + +K I ++ ++L+ R +S + A+ F +PS+R L DP Sbjct: 3 YKWNYEALTTQQKEQRDELAKKLGISPVLCQLLIQRGISSAEEARKFFHPSLRDLH-DPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D DKA +RI +A+ ++I+I+GDYDVDG +VAL+ +FL + N + YIPDR + Sbjct: 62 LLPDMDKAIKRIEKALGQKQRILIYGDYDVDGTTAVALVYKFLRKFTTNLDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA ++GID I+ DHH A A Sbjct: 122 GYGISEQGIDYAEETGVKLIIALDCGIKANEKIDYAKSKGIDFIIGDHHMPDDVLPDAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++ RLD HL GV F ++ + + + D ++ LLDLVA++ D+ Sbjct: 182 VIDAKRLDSTYPYEHLSGCGVGFKLVQALAQSNKID-----FSEITDLLDLVAVSVASDI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312 VP+ G NR GL + GLK +I+ ++ IT ++ + IGP INA GR+ Sbjct: 237 VPITGENRVLTYFGLKQINSNPSLGLKGIIDICGLTYKNITVNDIIFKIGPRINASGRMM 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL+S ++ +M +D N +RR ++ + E+A + + D+++ IV Sbjct: 297 KGKEAVDLLLSSTIEDAREKSMNIDHYNDDRRELDKRITEEAIQFI-DENVDMKEKKSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WH G++G++A+RL EK+ RP+ ++ + G GS RS+ GFD+ K + + Sbjct: 356 IYNETWHKGVIGIVASRLTEKYLRPAVVLT-KSQGLITGSARSVMGFDVYKAIEAC--KD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL GGH AAGL+++ N F+ + ++ + P ++D L+ +N Sbjct: 413 ILENFGGHTYAAGLSLKEENLKEFKSRFEALSLEMIAPEMMRPQIRVDAELSFKEINQKF 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLA--HLQM-TFESQDSETLQAIAFRV 548 + L + P+G N NP+F N + ++V HL++ + S + IAFR Sbjct: 473 TEDLAAFAPFGPENLNPIFVTCNVMDYGTSKLVGKDNVHLKLEMIDDTLSTPVNGIAFRQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + GK + L N G QL V D Sbjct: 533 QDSS----DKVKSGKPFDICYTLEENTHNGKTNIQLYVKDI 569 >gi|325280371|ref|YP_004252913.1| single-stranded-DNA-specific exonuclease RecJ [Odoribacter splanchnicus DSM 20712] gi|324312180|gb|ADY32733.1| single-stranded-DNA-specific exonuclease RecJ [Odoribacter splanchnicus DSM 20712] Length = 574 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 164/586 (27%), Positives = 267/586 (45%), Gaps = 23/586 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RWV + +++K ++A +L+ R ++ + A+ F PS+ +L DP + Sbjct: 3 KRWVI-NTPPEATKIEELSKKLNCHPVIANLLLQRGITSSEQAQSFFYPSLNMLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV--NANMYIPDRIV 132 + D DKA R+ +AI EKI+I+GDYDVDG +V+L+ ++L H N YIPDR Sbjct: 61 MKDMDKAVERLDRAIAQDEKILIYGDYDVDGTTAVSLLYKYLKHHCNSDNLEYYIPDRYT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G L++ DCG + + ++YA ++ +D+I+ DHH A Sbjct: 121 EGYGVSIKGIDYAAENGFSLMLITDCGIKAVEKVKYANSRQVDIIICDHHTPGDTLPEAI 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D L GV F ++ +L LLDL+ ++ D Sbjct: 181 AVLDPQRPDCPYPYKWLSGCGVSFKLVQAHS-----LKHNLPMSELYKLLDLLCVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +VP+ G NR GL + GLK +I+ I IT ++ + IGP INA GR+ Sbjct: 236 IVPITGENRILAYFGLQQLNSNPSLGLKTIIKISGIDKEITINDIVFRIGPRINAAGRVE 295 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL +D+ +A ++ N R+ ++ + E+A + Q + V Sbjct: 296 SGRKSVELLTADEKCSAAGIASDINTFNDQRKKLDHDITEEAIRHI-NQSELEPSKKTTV 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A+RL E F RP+ ++ E +G GS RS+EGFD+ +S E Sbjct: 355 LFNANWHKGVIGIVASRLTESFYRPTIILT-ESNGLATGSARSVEGFDLYYAISQCSEF- 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L GGH AAGLT++ N F++ + + TP ID + + + L Sbjct: 413 -LENYGGHKYAAGLTLKIENIEPFKQKFERIVRETIDDEMLTPQINIDAKIKLTDITPDL 471 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLA--HLQMTFESQDSETLQ--AIAFR 547 ML+ P+G N PVF + V HL++ I F Sbjct: 472 YHMLQKFAPFGPNNTIPVFMTEKVTNFIGTKRVGRNNEHLKLVIVDDTRACNDRSGIGFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + G + L N + G Q+ V D E Sbjct: 532 MGHL----YDKVNSGGFFDICYTLQENEFMGKNDIQMIVKDIRLRE 573 >gi|313204813|ref|YP_004043470.1| exonuclease recj [Paludibacter propionicigenes WB4] gi|312444129|gb|ADQ80485.1| exonuclease RecJ [Paludibacter propionicigenes WB4] Length = 574 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 286/583 (49%), Gaps = 21/583 (3%) Query: 18 WVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W+ E + ++ +I I++++LV R++ + + A+ F P + L DP ++ Sbjct: 5 WIYRTLTEQQRETQNKLAEELSISPILSQLLVQRDILTFEEARSFFRPDLSNLH-DPFLM 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A R+ +A+ +EKI+I+GDYDVDG SVAL+ +FL N YIPDR +GY Sbjct: 64 ADMHNAVNRLTKAMQKNEKILIYGDYDVDGTTSVALVYKFLKQFYRNVAFYIPDRYNEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + +LII +DCG + + ++YA +G+D I+ DHH + PA A++ Sbjct: 124 GISIQGIDFAADNDFKLIIALDCGIKAVEKVRYALEKGVDFIICDHHTPDAVLPPAVAVL 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D HL GV F ++ D L LLDL+AL+ D+VP Sbjct: 184 DPKRADCTYPYKHLSGCGVGFKLMQAFAITNNID-----FSQLTPLLDLLALSIASDIVP 238 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 + G NR GL + GL+ ++E IT ++ + IGP INA GR+ + Sbjct: 239 ITGENRILAFYGLKQINSNPSIGLQGILEVCGLKDKEITISDIVFKIGPRINASGRMKLA 298 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL+S D ++ + ++ N +R+ ++ + ++A A + + + S+ VV Sbjct: 299 SEAVELLVSSDYLFVKEKSDTINEYNNDRKDLDKNITDEAIALIGADKRYLDRKSI-VVH 357 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G++G++A+RL E++ +PS ++ +G GS RS+ GFDI K + +L Sbjct: 358 KPDWHKGVIGIVASRLSEEYYKPSIVLT-NSNGFASGSARSVSGFDIYKAIDSC--RDLL 414 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGH AAGL+++ N + F+KF + T P ID VL + Sbjct: 415 ENFGGHMYAAGLSMKEENIPAFTERFEKFVAENILKEQTYPQIDIDAVLEFKDITPKFFR 474 Query: 495 MLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNL--AHLQMTFESQDS-ETLQAIAFRVYG 550 +L+ GP+G GN P+F N + R+V HL++ S + IAFR++ Sbjct: 475 VLKQFGPFGPGNMKPIFVSKNVLDYGTSRLVGKEQEHLKLELVDSSSENVMNGIAFRMHE 534 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N + G+ QL + D VE Sbjct: 535 YNDHLKALN----PLDICYTIEENSFNGNTSIQLMIRDIKVVE 573 >gi|77412804|ref|ZP_00789009.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae 515] gi|77161100|gb|EAO72206.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae 515] Length = 732 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 288/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L+ +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALNMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ LI NI + E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A +D N+ R+ + + +QA + Q V V Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E DI +F Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH+ AAG+T+E G L + + ID L +++ Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + K+ RV+ HL++ E QD + L +AF + G Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L EF + + + + L VN W G+ QL + DA F + Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568 >gi|315607973|ref|ZP_07882966.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae ATCC 33574] gi|315250442|gb|EFU30438.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae ATCC 33574] Length = 573 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 163/583 (27%), Positives = 282/583 (48%), Gaps = 22/583 (3%) Query: 16 FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +A + +K + +A++L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYQTPTPDERQAADELGEKLNMSPTLAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIGYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA + GID I+ DHH PA A Sbjct: 122 GYGVSKKGIDYAKETGVKLIIILDCGIKAVEEITYAKSLGIDFIICDHHVPDEVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD +A D+ Sbjct: 182 ILNPKRPDDSYPFKHLCGCGVGFKFMQGFAK-----NNDIAFSRLIPLLDFCTVAIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLK++I+ ++ I+ ++ + IGP INA GR+ Sbjct: 237 VPVMDENRILAFHGLKQLNQNPSIGLKSIIDICGLNGREISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ + +A ++ N+ R+ ++ M E+A +++++ + + S IV Sbjct: 297 NGRESVDLLVEREFPVALRMATHINEYNEQRKDIDKQMTEEA-NQIVSRLESQRHRSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDMATGSARSVTGFDVYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+ GGH AAGLT++ + D FQKF + T ID +++ +N L Sbjct: 413 ILINFGGHTYAAGLTMKWEHVKEFRDRFQKFVEEHIEPEQTEATLNIDAMIDFKDINKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GN P+F + +VV H+++ + S + IAF Sbjct: 473 HTDLKRFAPFGPGNSKPLFCTCGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + + N ++ ++ QL++ D P Sbjct: 533 SAS----ARYIKSKRSFDIVYTIEDNVFKHNQ-VQLQIEDIRP 570 >gi|213963155|ref|ZP_03391413.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sputigena Capno] gi|213954239|gb|EEB65563.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sputigena Capno] Length = 564 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 168/581 (28%), Positives = 280/581 (48%), Gaps = 23/581 (3%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 + W + + Q+ I + +A +L R ++ AKDF P++ L +P Sbjct: 2 NYTWNFKPLPPQ-ATVIQLQQELNISEPLAILLAQRGITTFQQAKDFFRPTLSQLH-NPF 59 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ A R+ A+ N+E I+I+GDYDVDG ++V+LM R+LS + Y+PDR + Sbjct: 60 LMKGMQAAVTRLDHALKNNETILIYGDYDVDGTSAVSLMERYLSTFTSKLFTYVPDRYSE 119 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ +G LII +DCG + D +QYA +GID I+ DHH+ + A A Sbjct: 120 GYGISFQGIDYAEAQGCTLIIALDCGIKAIDKVQYAKEKGIDCIIADHHRPSDQVPDAVA 179 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + D LC G+ F + + L +L+ LLDLVA+AT D+ Sbjct: 180 VLDPQQADCPYPYKELCGCGLGFKLAQAYHEYL-----QRPFSELMPLLDLVAVATAADI 234 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 VP+ G NR + GL V +Q + G+KAL IT ++ + P INA GRI Sbjct: 235 VPMNGENRTLMYFGLEVINQQPSAGVKALF--GEHQGAITVSDVVFKAAPRINAAGRIEH 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D+++ + A ++D LN +R+ ++S + EQA ++ + + Q VV Sbjct: 293 GKYAVALLTEPDAEKALLKAQEIDELNTHRKELDSYIAEQALGQI--ESNGEQNRYTSVV 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ + D K S RS++GFDI + + + Sbjct: 351 LNEEWHKGVIGIVASRLIEHYYRPTIVFTKSGD-KYAASARSVQGFDIYEALEQCSQY-- 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT+ + + F+ + + TP ID L S + Sbjct: 408 LEQFGGHKYAAGLTLLPEQYPLFKEAFETVVKQTINPELRTPKLSIDTALPLSKLTQKFY 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFE-SQDSETLQAIAFRVY 549 ++L+ P+G N P+F N + + HL++ ++ A+ F + Sbjct: 468 NILKQFEPFGPQNLPPLFYAENVVDTGFAKHIGKTNEHLKLCLREVGNTAYFDAVGFGLA 527 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + G + + N W G QL+V D Sbjct: 528 H----KLPLITSGTPFSIVYSVEENVWNGKVSLQLQVRDIR 564 >gi|77411730|ref|ZP_00788068.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae CJB111] gi|77162238|gb|EAO73211.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae CJB111] Length = 732 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ LI NI + E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A +D N+ R+ + + +QA + Q V V Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E DI +F Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH+ AAG+T+E G L + + ID L +++ Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + K+ RV+ HL++ E QD + L +AF + G Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNSAHLKLKLE-QDGQALDLVAFNM-G 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L EF + + + + L VN W G+ QL + DA F + Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568 >gi|319745216|gb|EFV97535.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae ATCC 13813] Length = 732 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ LI NI + E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A +D N+ R+ + + +QA + Q V V Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E DI +F Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH+ AAG+T+E G L + + ID L +++ Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + K+ RV+ HL++ E QD + L +AF + G Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L EF + + + + L VN W G+ QL + DA F + Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568 >gi|22537366|ref|NP_688217.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae 2603V/R] gi|25011329|ref|NP_735724.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae NEM316] gi|22534239|gb|AAN00090.1|AE014247_5 single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae 2603V/R] gi|24412867|emb|CAD46939.1| Unknown [Streptococcus agalactiae NEM316] Length = 732 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAITYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ LI NI + E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A +D N+ R+ + + +QA + Q V V Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E DI +F Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH+ AAG+T+E G L + + ID L +++ Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + K+ RV+ HL++ E QD + L +AF + G Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L EF + + + + L VN W G+ QL + DA F + Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568 >gi|325269072|ref|ZP_08135693.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella multiformis DSM 16608] gi|324988693|gb|EGC20655.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella multiformis DSM 16608] Length = 574 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 162/586 (27%), Positives = 282/586 (48%), Gaps = 22/586 (3%) Query: 15 GFRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 F+W E + A + +K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 2 NFKWNYTPPTAEQEHTAAELGEKLGINPILAGLLIRRGITTESAAKRFFRPQLADLI-NP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D D A R+ A+ + E+I+++GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FLMKDMDAAVDRLNDAMGHKERILVYGDYDVDGCTAVALVYKFLRQFYSNIDYYIPDRYD 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G +LII +DCG + + + YA QGID I+ DHH PA Sbjct: 121 EGYGVSRKGIDFAKETGVRLIIILDCGIKAIEEIAYAKEQGIDFIICDHHVPDESMPPAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP R DD LC GV F + + N L+ LLD A++ D Sbjct: 181 AILNPKRPDDSYPFKDLCGCGVGFKFMQAFAK-----NNNIPFSRLIPLLDFCAVSIAAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +VP++ NR GL + + GLKA+I+ ++ ++ ++ + IGP INA GR+ Sbjct: 236 LVPVVDENRILAFHGLKQLNQNPSLGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRM 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+ + A +D N+ R+ ++ M E+A +++ + + + S I Sbjct: 296 ENGKKSVDLLVEREYGMAFRQAKHIDEYNEQRKDVDRQMTEEA-NQIVARLESQKHQSSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + W G++G++A+RL E + RP+ ++ ++ GS RS+ GFD+ + Sbjct: 355 VLYDEHWKKGVIGIVASRLTEIYFRPTVVLT-RDENLATGSARSVAGFDVYAAIKSC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+ GGH AAGLT++ + FQ + + + ID V++ + Sbjct: 412 DLLLNFGGHTYAAGLTMKWSDVKEFRRRFQDYVETHIEPEQREAILDIDAVIDFKDITKK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L + L+ P+G GN PVF + + +VV H+++ + + + IAF Sbjct: 472 LHNDLKRFAPFGPGNTKPVFCTLDVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ QL++ D P + Sbjct: 532 QSAS----ARYIKSKRSFDIAYTIEDNVFK-RGAVQLQIEDIRPTD 572 >gi|189463814|ref|ZP_03012599.1| hypothetical protein BACINT_00147 [Bacteroides intestinalis DSM 17393] gi|189438764|gb|EDV07749.1| hypothetical protein BACINT_00147 [Bacteroides intestinalis DSM 17393] Length = 571 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 167/582 (28%), Positives = 277/582 (47%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + + Q+ I I++ +LV R ++ AK F P + L DP + Sbjct: 4 KWNYQPITPEQVETSQKLAQELGISPILSGLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSTKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAAAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 183 LNAKRLDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAFHGLKQLNSNPSVGLKAIIDVCGLTEKDITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSMALEKANQINQYNETRKDLDKTMTEEA-NQIVADLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F++F + T+ V ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTERFEEFVSQNILPEQTSAVINIDAEIDFRDISPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ PYG NP P+F N + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPYGPDNPKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIQP 570 >gi|85059969|ref|YP_455671.1| ssDNA exonuclease RecJ [Sodalis glossinidius str. 'morsitans'] gi|84780489|dbj|BAE75266.1| single-stranded-DNA-specific exonuclease [Sodalis glossinidius str. 'morsitans'] Length = 578 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 186/568 (32%), Positives = 288/568 (50%), Gaps = 20/568 (3%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + IP ++ R+ V R V A L +R L+ LT ++A +++A+ + +I Sbjct: 20 EADIPPLLKRLYVQRGVC---AVGELERGVRGLLAY-HTLTGIEQAVDLLIRALADQRRI 75 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 M+ GD+D DGA S AL + L + +P+R DGYG +P ++E+ GAQLI+ Sbjct: 76 MVVGDFDADGATSTALTVLALRQMGAQTIDFLVPNRFEDGYGLSPEVVEQAAARGAQLIL 135 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S+ + A +GI V++ DHH A A+VNPN D L GV Sbjct: 136 TVDNGISSHAGVTLAHEKGIPVLITDHHLPGDTLPAAEAIVNPNLRDCTFASKSLAGVGV 195 Query: 215 VFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 F +++ + L L LLDLVAL TV DVVPL NR V +GL Sbjct: 196 AFYLMLALRARLNDSGWFTQRGIAAPKLAELLDLVALGTVADVVPLDANNRILVHQGLSR 255 Query: 271 ARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 R + PG++AL E N + + A +LG+ +GP +NA GR+ + ++G LL+S+D + Sbjct: 256 IRAGRCRPGIRALAEVANRDITRLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLPQ 315 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLA 387 MLA +LD LNQ RR +E M +A A + D Q + ++WH G+VG+LA Sbjct: 316 ARMLAAELDALNQTRREIEHGMEAEALALCQSMARDEQAMPFGLAIYHEQWHQGVVGILA 375 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAG 445 +R+KE+F RP A + +G GSGRS+ G + ++ G+++K GGHAMAAG Sbjct: 376 SRIKERFHRPVIAFAPAGEGVLKGSGRSVAGLHMRDLLERLDTLHPGMILKFGGHAMAAG 435 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+E F R F + + + V DG L +++ ++L GP+G G Sbjct: 436 LTLEHAQFERFRQRFAELVDEWLDPAMLEGVIWSDGELAGQELSLTTAELLRDGGPWGQG 495 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 P+P+F ++ + R+V HL++ E L IAF + + + Sbjct: 496 FPDPLFDGR-FRVLNQRLVGEKHLKLLLEPVAGGPMLDGIAFNIDSRLWPD----NSVHT 550 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L VN +RG++ QL + P+ Sbjct: 551 VELAYRLEVNEFRGNRSLQLLIQHIWPL 578 >gi|325298689|ref|YP_004258606.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides salanitronis DSM 18170] gi|324318242|gb|ADY36133.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides salanitronis DSM 18170] Length = 574 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 169/585 (28%), Positives = 278/585 (47%), Gaps = 22/585 (3%) Query: 15 GFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 ++W QE A A+ ++ I ++ R+L+ R ++ AK F P + L DP Sbjct: 2 NYKWNYQPPTQEEREAAKALAKEIGISPVLCRLLLERGITSAAEAKRFFRPQLNELH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +A R+ +A+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FLMKDMSRAVERLNKAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G +L+I +DCG + + + YA +GID I+ DHH PA Sbjct: 121 EGYGVSKKGVDYAYETGVKLVIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDEVLPPAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP R D HL GV F + N L LLDLVA++ D Sbjct: 181 AILNPKRHDASYPYSHLSGCGVGFKFMQAFA-----LNNGIEFQQLTPLLDLVAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLKA+I+ +T ++ + IGP INA GRI Sbjct: 236 IVPVMGENRVLAYHGLKQLNTNPSIGLKAIIDVCGLSDRELTMSDIIFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LLI D A +++ N+ R+ ++ M E+A K++ Q ++ Q I Sbjct: 296 QNGKEAVDLLIEKDFPLALQKARQINQYNETRKDLDKNMTEEA-NKIVDQLANLSQRRSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + + Sbjct: 355 VIYNEAWHKGVIGIVASRLTEIYYRPAVVLTRTNE-LATGSARSVSGFDVYKAIEYC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+++ + T+ ID L+ + Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFARRFEEYVTRHILPEQTSATIDIDAQLDFRDITSK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L+ P+G NP PVF N + +VV H+++ + + + IAF Sbjct: 472 FFFDLKKFNPFGPENPKPVFCTMNVFDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + ++ + N + QL++ D P Sbjct: 532 QS----SQARFIKTKQSFNICYTIEENTHK-RGDVQLQIEDIKPS 571 >gi|126653977|ref|ZP_01725814.1| YrvE [Bacillus sp. B14905] gi|126589534|gb|EAZ83676.1| YrvE [Bacillus sp. B14905] Length = 773 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 181/593 (30%), Positives = 297/593 (50%), Gaps = 27/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 +S RW + +N A+ + I A++L R + A+ LN + + D Sbjct: 3 LSKKRWQV--ERPDVNLVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANVH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P ++ +A RI QA+ N EKI+++GDYD DG S +M+ L + + + IP+R Sbjct: 60 PFLMHGMTEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLNLGADVSFKIPNRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + GYGP+ +L + EG QLIITVD G + + ++ A G+DVIV DHH+ E PA Sbjct: 120 IHGYGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +++P + G L GV F + +Y L LL+ VA+ TV Sbjct: 180 DIILHPRIPEGHYPFGELAGVGVAFKLAHALYGELP-----------THLLEYVAIGTVA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL+ NR V +G+ RR +P ++A+ + + I E +G+ GP NA GR Sbjct: 229 DLVPLVDENRYLVKRGIEEMRRSLSPWVQAMCDIASTEQAKINEETIGFYFGPRFNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G+++ G LL+++DS + LA +L+ N R+ + ++ ++A A + + I + V Sbjct: 289 LGDASPGVELLMAEDSAKATALAKQLNACNTERKDIVKSITDEAIALIEAE-KKISDSLV 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +VV G+ W+ G+VG++A+RL E++ RP+ +S + G GS RSIEGF + A Sbjct: 348 LVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIEGFHLY--NELAK 405 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L A + TPV ID L+ ++ Sbjct: 406 NRDILPHFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEQLTPVVHIDIPLSLDEIS 465 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 I+ + + GPYG P PV+ + ++ S+R + H++M + + L ++ F Sbjct: 466 ADAIEEISTLGPYGTDFPKPVYVLEDVEISSMRKIGAAENHIKMEL-TNGYDKLDSVGF- 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G E + G ++ G L +N W+G K+ Q + D E F + Sbjct: 524 HKGHLHDEL---TYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIR 573 >gi|330828612|ref|YP_004391564.1| Single-stranded-DNA-specific exonuclease RecJ [Aeromonas veronii B565] gi|328803748|gb|AEB48947.1| Single-stranded-DNA-specific exonuclease RecJ [Aeromonas veronii B565] Length = 576 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 281/564 (49%), Gaps = 19/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ ++ +R V L S L+P P L ++A + +A+ ++I+I Sbjct: 20 LHPLLRQIFASRGVEDPAL---LERSASQLLP-PQRLYGMEQAVPLLAEALTAQKRILIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + + +P+R GYG P ++E + GA+ +ITVD Sbjct: 76 GDFDCDGATSSALCVLALRAMGGRHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A G+ V+V DHH E A A+VNPN+ L GV F Sbjct: 136 NGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGCDFPSKSLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LRQ ++ LDLVAL TV DVV L G NR V +GL R Sbjct: 196 LMAALNTHLRQLGWFERQGLRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRA 255 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL++ +TA +LG+ +GP +NA GR+ + +LG L+ DD Sbjct: 256 GRCRPGIQALVDVSGRDGRRLTAADLGFALGPRLNAVGRLDDMSLGVACLLCDDLNLARQ 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA ++D LNQ R+ +E M ++A A + + D + S IV+ + WH G+VGL+A+++ Sbjct: 316 LAAEMDSLNQERKEIEQGMQQEALATLEQVRFRDGEVPSGIVLHRNEWHQGVVGLVASKV 375 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEK+ RP A + + + GSGRSI G + + G++ K GGHAMAAGLT+ Sbjct: 376 KEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTL 435 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + N F+ +V + T V DG L +N+ L +++ ++GP+G P Sbjct: 436 PKANIEAFGRAFEAVISELVTPELLTGVLLTDGELLPDELNLELAELIRASGPWGQAFPE 495 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 P+F L R+V HL+M + + AIAF V + + KR+ + Sbjct: 496 PLFDGEFV-LVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWPDATV----KRVRLV 550 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN WRG++ QL V Sbjct: 551 YRLDVNEWRGNRSVQLLVEHLEAA 574 >gi|218960658|ref|YP_001740433.1| putative ssDNA exonuclease, 5'--> 3'-specific [Candidatus Cloacamonas acidaminovorans] gi|167729315|emb|CAO80226.1| putative ssDNA exonuclease, 5'--> 3'-specific [Candidatus Cloacamonas acidaminovorans] Length = 574 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 180/582 (30%), Positives = 295/582 (50%), Gaps = 20/582 (3%) Query: 15 GFRWVSL--LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 +W+ G+E ++ + +P +VA +L + + +++ A++F PS+ L D Sbjct: 3 NKKWLIPSPPGKEINPEIEKLSAEFKLPRLVAELLYRKGIKTVNSAQEFFKPSMDNLY-D 61 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + D +KA +RI++AI + EKI I+GDYDVDG + AL+ L N + YIP R+ Sbjct: 62 PYLFPDMEKAVQRILRAIDSKEKITIYGDYDVDGTTATALLYLGLKRIGANIDFYIPHRM 121 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +DGYG + ++ G+ LII+VDCG + + + + G+++I+ DHH K E PA Sbjct: 122 IDGYGLSLGSLDALRENGSSLIISVDCGVNAIEEINAINSMGMEIIITDHHNPKDELPPA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A++NP HL GV + +L+ IY L D + L +DLVA+ T+ Sbjct: 182 FAIINPKLPGTKYPYEHLAGVGVAYKLLMAIYNNLGID----SAENKLKYMDLVAVGTIA 237 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR + GL + N GL AL++ ++ + ++ + I P INA GR Sbjct: 238 DIVPLTSENRIFASIGLQHLIEKKNLGLNALVQISGLNQKNLDTTDIVFGIAPRINAAGR 297 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G +++ LLIS D + LA ++ N R+ + ++A + + D+QQ S Sbjct: 298 MGSASVSVELLISTDEAKSMELAEIIEHQNSLRQQEDQKTFQEACDIIEKKYKDLQQTSC 357 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV D WHPG++G++A++L EK+ RP ISF++ G G GSGRS+ FD+ + Sbjct: 358 MVVSSDDWHPGVIGIVASKLVEKYYRPVIMISFKD-GFGSGSGRSVADFDL--FEALKQT 414 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E L GGH A GLT+ + R + +F + P +ID + +N Sbjct: 415 EHNLHSFGGHKYAVGLTIYQEYLDRFENELTRFVSENLRLEQIQPPLQIDAEIELYNINN 474 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVY 549 L+D LE P+G N PVF N + S V HL++ I F + Sbjct: 475 TLLDALEHFAPFGPDNTRPVFMTRNVTIASYPYNVGRNHLKLKVVK------DGIYFNLI 528 Query: 550 GTPLGEFL-MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G LG++L + + ++ + L N + + Q ++ D Sbjct: 529 GYNLGDYLPLLKKNGKLDIAYTLEYNRFGNNLTIQGKLKDLQ 570 >gi|77407833|ref|ZP_00784586.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae COH1] gi|77173580|gb|EAO76696.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae COH1] Length = 732 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ LI NI + E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A +D N+ R+ + + +QA + Q V V Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E DI +F Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH+ AAG+T+E G L + + ID L +++ Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDT 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + K+ RV+ HL++ E QD + L +AF + G Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L EF + + + + L VN W G+ QL + DA F + Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568 >gi|188995866|ref|YP_001930118.1| single-stranded-DNA-specific exonuclease [Porphyromonas gingivalis ATCC 33277] gi|188595546|dbj|BAG34521.1| single-stranded-DNA-specific exonuclease [Porphyromonas gingivalis ATCC 33277] Length = 584 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 172/590 (29%), Positives = 271/590 (45%), Gaps = 27/590 (4%) Query: 15 GFRWVSLLGQEGINRALAI-TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + W I ++ + +V +L R + S++ AK F P + L DP Sbjct: 2 NYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPD 129 ++ D DKA R+ +A+ EKIMI+GDYDVDG +VAL+ ++L + YIPD Sbjct: 61 FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD 120 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R +GYG + ++ + G +LII +DCG + + + YA + ID I+ DHH Sbjct: 121 RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP 180 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A A+++ R D+ HL GV F + R LL LLDLVA++ Sbjct: 181 DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYARS-----NNLPESKLLPLLDLVAVSI 235 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAG 308 D+VP++G NR GL ++ GL+A+I+ I ++ + IGP INA Sbjct: 236 ASDIVPIMGENRILAYYGLRQLNKRPCLGLQAIIDVCGLKKRRIDMNDIVFKIGPRINAS 295 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ LL+S D+ E + +D N RR ++ + EQA + Sbjct: 296 GRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELS--DVDK 353 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 ++V+ WH G++G++A+R+ E++ RP+ ++ D GS RS+ GFD+ K + Sbjct: 354 KILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVYKAIEHC 412 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +LV GGH A+GLT++ N +A V + P +D ++ V Sbjct: 413 --KDLLVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEV 470 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNL--AHLQMTFESQDSET--LQA 543 N L+D L+ GP+G N PVF R V HL++ E + Sbjct: 471 NYKLLDNLKRMGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGSGERHPVSG 530 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAF G + + + + N + G+K QL V D P E Sbjct: 531 IAFNQAGHC-----NEIKNGSFRLCYTIEENEFNGNKSLQLLVRDIKPEE 575 >gi|34539926|ref|NP_904405.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas gingivalis W83] gi|34396237|gb|AAQ65304.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas gingivalis W83] Length = 584 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 172/590 (29%), Positives = 271/590 (45%), Gaps = 27/590 (4%) Query: 15 GFRWVSLLGQEGINRALAI-TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + W I ++ + +V +L R + S++ AK F P + L DP Sbjct: 2 NYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPD 129 ++ D DKA R+ +A+ EKIMI+GDYDVDG +VAL+ ++L + YIPD Sbjct: 61 FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD 120 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R +GYG + ++ + G +LII +DCG + + + YA + ID I+ DHH Sbjct: 121 RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP 180 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A A+++ R D+ HL GV F + R LL LLDLVA++ Sbjct: 181 DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYARS-----NNLPESKLLPLLDLVAVSI 235 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAG 308 D+VP++G NR GL ++ GL+A+I+ I ++ + IGP INA Sbjct: 236 ASDIVPIMGENRILAYYGLRQLNKRPCLGLQAIIDVCGLKKRRIDMNDIVFKIGPRINAS 295 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ LL+S D+ E + +D N RR ++ + EQA + Sbjct: 296 GRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELS--DVDK 353 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 ++V+ WH G++G++A+R+ E++ RP+ ++ D GS RS+ GFD+ K + Sbjct: 354 KILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVYKAIEHC 412 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +LV GGH A+GLT++ N +A V + P +D ++ V Sbjct: 413 --KDLLVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEV 470 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNL--AHLQMTFESQDSET--LQA 543 N L+D L+ GP+G N PVF R V HL++ E + Sbjct: 471 NYKLLDNLKRMGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGSGERHPVSG 530 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 IAF G + + + + N + G+K QL V D P E Sbjct: 531 IAFNQAGHC-----DEIKNGSFRLCYTIEENEFNGNKSLQLLVRDIKPEE 575 >gi|147677378|ref|YP_001211593.1| hypothetical protein PTH_1043 [Pelotomaculum thermopropionicum SI] gi|146273475|dbj|BAF59224.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 946 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 175/578 (30%), Positives = 289/578 (50%), Gaps = 21/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W + + +K I + A++L+NR + +++ + F+ + L P + Sbjct: 53 KIWRVKTPAPVLCQI--FARKLDISPVTAQLLINRGIYTVEQGRAFIGSELSRLHR-PEL 109 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D A RI+QA+ EKI+I+GDYD DG + AL+++ +A+ YIP R+ +G Sbjct: 110 LRDMDTAVARILQAVEAGEKILIYGDYDADGITATALLIKVFRRLGADADYYIPGRLEEG 169 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++K + +G L++TVDCG ++ ++A G+D+I+ DHH+ E A A+ Sbjct: 170 YGVHLEPLQKALQKGTGLVVTVDCGISALAEAEWARANGLDLIITDHHEPPPEIPNACAV 229 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D L G+ + + L LDL L TV D+V Sbjct: 230 INPKRPDCSYPFKELAGVGLALKLAQALLERTGAGE-----KAWLDYLDLACLGTVADIV 284 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 P+ G NR V GL G+PGL+AL+ I ++ +GY + P +NA GRIG Sbjct: 285 PVQGENRILVKHGLPRLAGTGSPGLQALMAVSGIKGDNLSPREVGYALAPRLNAAGRIGT 344 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +G RLL++DD +E LA +L+ NQ R+ +ES + E+A + + + +A V V+ Sbjct: 345 PQMGVRLLMTDDLEEARHLAGELNRYNQVRQKIESKVFEEALSLLEAD-PGLAEAPVPVL 403 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK RP IS E + G GS RSI GF++ K +S E Sbjct: 404 ASPGWHAGVIGIVASRLAEKLYRPVLLISLEGE-LGRGSARSIPGFNVYKALSHCHEY-- 460 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHA+AAG VE L +A V A P ++DG++ V+ L+ Sbjct: 461 LLEYGGHALAAGFKVEGGMVEDLRKKINGYARTAVEAEKLIPYLELDGIVEVGQVSEELV 520 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G NP+P+ + RV+ HL++ ++ + I F + Sbjct: 521 NEIKLLSPFGPSNPDPLLCCLEAFVLESRVIGKGSSHLKLRLRGKN-TVMDGIGFNLG-- 577 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + +++ + +N + G + QL V D Sbjct: 578 --AYAEVLATAEKVDLAFVPGINEYNGRRSLQLEVKDL 613 >gi|330447416|ref|ZP_08311065.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491607|dbj|GAA05562.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 574 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 181/562 (32%), Positives = 281/562 (50%), Gaps = 20/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP I+ R+ +R ++ D L + L+ + L + A + + A+ N+ +I+I Sbjct: 19 IPPILQRIYASRGINND---AELERGAKGLL-NYNQLYGMESAVQLLSDALANNTRIIIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGCQNVDYLVPNRFDDGYGLSPEVVEQAQARGAELIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A +GI V+V DHH A A+VNPN + LC GV F Sbjct: 135 NGVSSISGVAAAKEKGIKVLVTDHHLPGDTLPIADAIVNPNLNECGFPSKALCGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR + +L LLDLVAL TV DVV L G NR V +GL R Sbjct: 195 LMLALRAELRNNGWFEQQGIAMPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++ALIE N + +LG+ +GP INA GR+ + + G LL+ D+ Q Sbjct: 255 GKCRPGIQALIEVANRDPSRLVTSDLGFALGPRINAAGRLDDMSFGVELLLCDNIQAARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390 +A +LD LNQ R+ +E M ++A A + Q +V WH G++G+LA+R+ Sbjct: 315 MASELDGLNQTRKEIEQGMKDEALAICERLKFNQQNMPYGLVLFQRDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 K+K+ RP A + +G+ GS RSI G + + G+++K GGHAMAAGLT+ Sbjct: 375 KDKYHRPVIAFADAGNGEIKGSCRSIAGLHMRDALDLVDTQNPGMILKFGGHAMAAGLTI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 F +++ V DG L + +N+ + ++L + GP+G P Sbjct: 435 PEDKLDAFSKAFDAVVRSVLDEDALKGVLLTDGELGSHELNLEVAEILRAGGPWGQQFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L ++V HL+M E + AIAF V + + +++ + Sbjct: 495 PSFDGT-FRLLHQKLVGGKHLKMMVEPLNGGSVIDAIAFNVDVKRWPD----ASVQQIEL 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589 L VN +RG++ QL V Sbjct: 550 VYRLDVNEYRGNRSVQLMVEHL 571 >gi|76786929|ref|YP_329907.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae A909] gi|77405405|ref|ZP_00782499.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae H36B] gi|76561986|gb|ABA44570.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae A909] gi|77175987|gb|EAO78762.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus agalactiae H36B] Length = 732 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 287/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNESVYKYFIEQQGVSLIITVDNGVAGHEAIAYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ LI NI + E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A +D N+ R+ + + +QA + Q V V Sbjct: 293 DPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML------DQTKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E DI +F Sbjct: 347 LAKENWHPGVLGIVAGRILERTGQPVIVLN-IEDGIAKGSARSVEALDI--FQAFDQHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH+ AAG+T+E G L + + ID L +++ Sbjct: 404 LFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMGQKKTLTIDSELRFDELSLDT 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + K+ RV+ HL++ E QD + L +AF + G Sbjct: 464 VRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDGQALDLVAFNM-G 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L EF + + + + L VN W G+ QL + DA F + Sbjct: 522 SQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFDIR 568 >gi|169829358|ref|YP_001699516.1| single-stranded-DNA-specific exonuclease recJ [Lysinibacillus sphaericus C3-41] gi|168993846|gb|ACA41386.1| Single-stranded-DNA-specific exonuclease recJ [Lysinibacillus sphaericus C3-41] Length = 773 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 181/593 (30%), Positives = 297/593 (50%), Gaps = 27/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 +S RW + + A+ + I A++L R + A+ LN + + D Sbjct: 3 LSKKRWQV--ERPDVELVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANVH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P ++ +A RI QA+ N EKI+++GDYD DG S +M+ L N + IP+R Sbjct: 60 PFLMHGMAEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLDLGANVSFKIPNRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + GYGP+ +L + EG QLIITVD G + + ++ A G+DVIV DHH+ E PA Sbjct: 120 IHGYGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +++P + G L GV F + +Y L L++ VA+ TV Sbjct: 180 DIILHPRLPEGHYPFGELAGVGVAFKLAHALYGELP-----------THLIEYVAIGTVA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL+ NR V +G+ RR +P ++A+ + + I+ E +G+ GP +NA GR Sbjct: 229 DLVPLVDENRYLVKRGIEEMRRSLSPWVQAMCDIASTEQAKISEETIGFYFGPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +GE++ G LL+++DS + LA +L+ N R+ + + E+A A + ++ I + V Sbjct: 289 LGEASPGVELLMAEDSVKATALAKQLNASNTERKDIVKNITEEAIALIESE-KKISDSLV 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +VV G+ W+ G+VG++A+RL E++ RP+ +S + G GS RSI+GF + A Sbjct: 348 LVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIDGFHLY--NELAK 405 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L A + TPV ID L+ ++ Sbjct: 406 NRDILPHFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEHLTPVVHIDIPLSLDEIS 465 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 I+ + S GP+G P PV+ + ++ S+R + H++M + + L ++ F Sbjct: 466 ADAIEEIASLGPFGTDFPKPVYVLEDVEISSMRKIGAAENHIKMEL-TNGCDKLDSVGF- 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G E + G ++ G L +N W+G K+ Q + D E F + Sbjct: 524 HKGHLHDEL---TYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIR 573 >gi|255011348|ref|ZP_05283474.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fragilis 3_1_12] gi|313149162|ref|ZP_07811355.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides fragilis 3_1_12] gi|313137929|gb|EFR55289.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides fragilis 3_1_12] Length = 572 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 168/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W QE + A+ Q+ I ++ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITQEQAETSRALAQELGISPVLGQLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLDL A++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ +M E+A K++ + + + IV+ Sbjct: 298 GKEAVDLLIEKDFSTALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLVDRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F+ F + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF + + +VV H+++ + + + IAF Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|303229401|ref|ZP_07316191.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica ACS-134-V-Col7a] gi|302515937|gb|EFL57889.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica ACS-134-V-Col7a] Length = 664 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 191/580 (32%), Positives = 300/580 (51%), Gaps = 24/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 RW + + ++ + IVAR++VNRN+ D FL +++ L+ DP L Sbjct: 4 KRWHIMPRNVEKEN--TLIRELGVNPIVARLMVNRNIDSDEGHRFLEGTLKDLL-DPFTL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + A I++ I + I+++GDYDVDG + +L+ RFL + YIP+R +GY Sbjct: 61 KDMETAVALILETIEAEKSIVVYGDYDVDGITATSLLYRFLVKMGARVSYYIPERQSEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++ I++GA L+ITVDCG +SYD ++ ++ ID+I+ DHH + PA A++ Sbjct: 121 GLNLEALDHIISDGASLVITVDCGISSYDIVEAVCDR-IDIIITDHHTAPPQIPPARAVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 N + D +L GV F + ++ LRQ L LD+VAL TV DVVP Sbjct: 180 NHKQPDCPYRDKNLSGVGVAFKLCQALW--LRQCG-----EWYLDDLDIVALGTVADVVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V GL N G+ LI+ ITA ++G+ + P +NA GR+ + Sbjct: 233 LVGENRIIVQAGLKKMNELPNLGIDKLIDVAGLHDKTITAGHIGFTLAPRLNAAGRVTHA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++DD E +A +L N R+ +E ++ E+A A V Q V VV Sbjct: 293 TRAVELLVTDDVDLAETIAQELQETNMERQEIERSIHEEARANVAAQGHLA--GYVTVVA 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ WHPG++G++A+RL E+F +P+ IS ++G G GS RSIEGF+I + F E IL Sbjct: 351 GENWHPGVIGIVASRLVEEFYKPTLVIS-IDNGVGKGSCRSIEGFNIYNALKFC--EDIL 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGHA AAG +++ L ++ V PV ID L +++ ++D Sbjct: 408 IQFGGHAAAAGFSIDASRIDELRQRLTEYCKAHVSPDEYIPVVSIDATLPVDDIDVDIVD 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + + PYG GN P+F + K+Q I ++ H ++ + + ++ AIA+ Sbjct: 468 RVSALEPYGMGNSTPIFGVMDAKVQDIMLMGQLKNHCKVILATANG-SVDAIAWNRPDL- 525 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F +G + V L N W+G QL + D P+ Sbjct: 526 ---FRHIFQGMNVKVAFTLQKNEWQGFVSPQLMIQDIEPI 562 >gi|320540118|ref|ZP_08039773.1| ssDNA exonuclease, 5' --> 3'-specific [Serratia symbiotica str. Tucson] gi|320029784|gb|EFW11808.1| ssDNA exonuclease, 5' --> 3'-specific [Serratia symbiotica str. Tucson] Length = 576 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 180/565 (31%), Positives = 277/565 (49%), Gaps = 19/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L S++ ++P L+ D A + QA+ + IM+ Sbjct: 21 NLPPLLRRLYALRGVQGEQE---LERSVKGMLP-WQQLSGIDTAVGILEQALVDCRSIMV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 77 LGDFDADGATSTALTVLALRSMGGSVDYLVPNRFEDGYGLSPEVVEQAAARGAELIVTVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A G+ V+V DHHQ A A+VNPN L GV F Sbjct: 137 NGVSSHAGVDVAHANGMQVLVTDHHQPGETLPAAEAIVNPNLRGCEFPSKSLAGVGVAFY 196 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 LMLALRARLRDSGWFAQRALATPNLAELLDLVALGTVADVVPLDTNNRILVYQGLHRIRA 256 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E + A +LG+ +GP +NA GR+ + ++G LL+SDD + M Sbjct: 257 GKCRPGIRALLEVAKRDARQLVASDLGFALGPRLNAAGRLDDMSVGVALLLSDDIAQARM 316 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA LD LNQ RR +E M +A + + + + WH G+VG+LA+R+ Sbjct: 317 LANDLDTLNQTRREIEQGMQIEALHLCDQLERTSTELPYGLAMYHPEWHQGVVGILASRI 376 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++ GGHAMAAGL++ Sbjct: 377 KERFHRPVIAFAPVGDGILKGSGRSVAGLHMRDALERLDMLSPGLMMTFGGHAMAAGLSL 436 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + V DG L+ +++ ++L GP+G P Sbjct: 437 EEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELSMQELSLTTAELLRDGGPWGQAFPE 496 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF V T + S + + + Sbjct: 497 PTFDGR-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVEL 551 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL + P Sbjct: 552 AYKLDINEFRGNRNVQLLIQHLWPH 576 >gi|152976827|ref|YP_001376344.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025579|gb|ABS23349.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cytotoxicus NVH 391-98] Length = 779 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + + R + + DF N + DP +L Sbjct: 7 RWKEKTYNE--ELVRELASKLQLSPLVVSLFLGRGLDTEDKIMDFFN-TAEQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ QAI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVKQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN G LIITVD G + Q A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHQAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+++ P INA GR+ ++ Sbjct: 233 LHGENRLIVQRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFLLAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A +V + + V+V+ Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIIEVECKYPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + E GS RSIEGFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDSEKQIAKGSARSIEGFDL--FANLSDCRDL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A+ ++ P+ ID V V ++ I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQANAVLVEEDFIPITTIDAVCKVEDVTLSAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPCIAVKDADLESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G + +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|299535667|ref|ZP_07048988.1| single-stranded-DNA-specific exonuclease recJ [Lysinibacillus fusiformis ZC1] gi|298728867|gb|EFI69421.1| single-stranded-DNA-specific exonuclease recJ [Lysinibacillus fusiformis ZC1] Length = 776 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 180/593 (30%), Positives = 291/593 (49%), Gaps = 27/593 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 +S RW + A+ + I A++L R + A+ LN + + D Sbjct: 3 LSKKRWQV--ERPDATLVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANIH-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P ++ +A RI QA+ N EKI+++GDYD DG S +M+ L + + IP+R Sbjct: 60 PFLMHGMAEAVARIEQALENGEKILVYGDYDADGVTSTTVMLHVLLDLGADVSFKIPNRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + GYGP+ +L + EG QLIITVD G + + ++ A G+DVIV DHH+ E PA Sbjct: 120 IHGYGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGMDVIVTDHHEPGEELPPA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +++P + G L GV F + +Y L L++ VA+ TV Sbjct: 180 DIILHPRIPEGQYPFGELAGVGVAFKLAHALYGELP-----------SHLIEFVAIGTVA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL+ NR V +G+ RR +P ++AL + + IT E +G+ GP NA GR Sbjct: 229 DLVPLVDENRYLVKRGIQEMRRSLSPWVQALCDIASTEQTKITEETIGFYFGPRFNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +GE+ G LL+++D+ + LA KL+ N R+ + ++ ++A A + + I + V Sbjct: 289 LGEAAPGVELLMAEDNAKATALAKKLNACNTERKDIVKSITDEAIALIEAD-EKIGHSLV 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +VV G+ W+ G+VG++A+RL E + RP+ +S E G GS RSIEGF + A Sbjct: 348 LVVAGEGWNAGVVGIVASRLVELYYRPTIVLSLDPEKGMAKGSARSIEGFHLY--NELAK 405 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 IL GGH MAAG+T+ + L A + TPV ID L+ ++ Sbjct: 406 NRDILPHFGGHPMAAGMTLSLEHVDELRTRLDAQARACLTEEQLTPVVHIDIPLSIDEIS 465 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFR 547 I+ + + GP+G P PV+ + ++ S+R + H++M + + L ++ F Sbjct: 466 ADAIEEISTLGPFGTDFPKPVYVLEDVEIASMRKIGAGENHIKMEI-TNGYDKLDSVGFN 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + G ++ G L +N W+G K+ Q + D E F + Sbjct: 525 KGHLH----DELTYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIR 573 >gi|253566348|ref|ZP_04843802.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_2_5] gi|251945452|gb|EES85890.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_2_5] gi|301164670|emb|CBW24229.1| putative single-stranded-DNA-specific exonuclease [Bacteroides fragilis 638R] Length = 572 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W QE + A+ Q+ I ++ R+LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITQEQAEISRALAQELGISPVLGRLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLDL A++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNGNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ +M E+A K++ + + + IV+ Sbjct: 298 GKEAVDLLIEKDFSAALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F+ F + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF + + +VV H+++ + + + IAF Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|262384491|ref|ZP_06077625.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_33B] gi|301309112|ref|ZP_07215056.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 20_3] gi|262293784|gb|EEY81718.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_33B] gi|300832794|gb|EFK63420.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 20_3] Length = 574 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 172/582 (29%), Positives = 286/582 (49%), Gaps = 21/582 (3%) Query: 17 RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W +E +++ + + ++ +LV R ++ + AK F PS+ L DP + Sbjct: 4 KWNFQTPSEEELHKRDQLVAELGFSPVICLLLVQRGITSIEEAKKFFKPSLNDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA RR+ +A+ N EKI+I+GDYDVDG +V+L+ ++L S + YIPDR +G Sbjct: 63 MPDMDKAVRRLNKALGNKEKILIYGDYDVDGTTAVSLVFKYLRPYSSTLDFYIPDRYDEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G L+I++DCG + + ++YA +GID I+ DHH + A A+ Sbjct: 123 YGISYKGIDYAAENGVSLVISLDCGIKAIEKIEYAKEKGIDFIICDHHMPDATLPDAVAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ R D + HL GV F + + N P + L LL+L A++ D+V Sbjct: 183 LDAKRSDSIYPYEHLSGCGVGFKFMQAFAK----SNNFPFSD-LEKLLELTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR GL + GLK +I+ IT ++ + IGP INA GR+ Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLTGKEITISDIVFKIGPRINASGRMMN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL+S DS + ++ N+ RR ++ + ++A A V+ + +++ IVV Sbjct: 298 GKEAVELLLSKDSASAREKSESINQYNEERRELDKKITDEANA-VIDEVENMDDRKAIVV 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK+ RP+ ++ + GS RS+ GFDI K + + Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL++ N + F K A + P ID +L+ +N + Sbjct: 414 LENFGGHTYAAGLSLREENLEAFTERFLKIASEEIIPEQMIPQIDIDAILDLKEINQKFV 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTFESQDSET-LQAIAFRVY 549 + L+ P+G N PVF K + ++V HL++ +S T + AIAF ++ Sbjct: 474 NDLKKMSPFGPDNQKPVFCSLGVKDYGTSKLVGKELEHLKLELIDGNSSTPMHAIAFGMH 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K ++ + N + G+ QL + D P Sbjct: 534 RHN----DHIKGMKPFNICYTVEENTYNGNTSIQLMIKDIKP 571 >gi|323344224|ref|ZP_08084450.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oralis ATCC 33269] gi|323094953|gb|EFZ37528.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oralis ATCC 33269] Length = 577 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 159/587 (27%), Positives = 276/587 (47%), Gaps = 22/587 (3%) Query: 16 FRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +A + +K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYEPPTPQEEQAAKELGEKLNINQILALLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDIAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNVDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ + G +LI+ +DCG + + + YA + GID I+ DHH A A Sbjct: 122 GYGVSKKGIDYAKDTGVKLIVILDCGIKAIEEIAYAKSLGIDFIICDHHVPDEVMPCAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F ++ + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDSYPFKHLCGCGVGFKLMQAFAK-----NNGIPFSRLIPLLDFCAVSIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+ NR GL + + GLKA+I+ ++ I+ ++ + IGP INA GR+ Sbjct: 237 VPVTDENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRDISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A ++ N+ R+ ++ M E+A +++ + + + S IV Sbjct: 297 NGKESVDLLVEKDFSSALTQAKHINEYNEQRKDIDKQMTEEA-NQIVAKLESQKHHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDFATGSARSVTGFDLYAAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+ GGH A GLT+ + FQ++ + ID ++ + L Sbjct: 413 ILINFGGHTYATGLTLRWNDVPEFRKRFQRYVEEHIQPEQIEANLNIDAQIDFKDITKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G N P+F + + +VV H+++ + S + IAF Sbjct: 473 HNELKKFSPFGPCNTKPIFCTTDVYDYGTSKVVGRIQEHIKLELVDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N ++ QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIENNIFK-RNAVQLQIEDIRPTEDE 574 >gi|150008372|ref|YP_001303115.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides distasonis ATCC 8503] gi|255015620|ref|ZP_05287746.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_7] gi|256839338|ref|ZP_05544847.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides sp. D13] gi|298375012|ref|ZP_06984969.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_1_19] gi|149936796|gb|ABR43493.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides distasonis ATCC 8503] gi|256738268|gb|EEU51593.1| single-stranded-DNA-specific exonuclease RecJ [Parabacteroides sp. D13] gi|298267512|gb|EFI09168.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_1_19] Length = 574 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 172/582 (29%), Positives = 286/582 (49%), Gaps = 21/582 (3%) Query: 17 RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W +E +++ + + ++ +LV R ++ + AK F PS+ L DP + Sbjct: 4 KWNFQTPSEEELHKRDQLVAELGFSPVICLLLVQRGITSIEEAKKFFKPSLNDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA RR+ +A+ N EKI+I+GDYDVDG +V+L+ ++L S + YIPDR +G Sbjct: 63 MPDMDKAVRRLNKALGNKEKILIYGDYDVDGTTAVSLVFKYLRPYSSTLDFYIPDRYDEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G L+I++DCG + + ++YA +GID I+ DHH + A A+ Sbjct: 123 YGISYKGIDYAAENGVSLVISLDCGIKAIEKIEYAKEKGIDFIICDHHMPDATLPDAVAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ R D + HL GV F + + N P + L LL+L A++ D+V Sbjct: 183 LDAKRSDSIYPYEHLSGCGVGFKFMQAFAK----SNNFPFSD-LEKLLELTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR GL + GLK +I+ IT ++ + IGP INA GR+ Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLTGKEITISDIVFKIGPRINASGRMMN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL+S DS + ++ N+ RR ++ + ++A A V+ + +++ IVV Sbjct: 298 GKEAVELLLSKDSASAREKSESINQYNEERRELDKKITDEANA-VIDEVENMDDRKAIVV 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK+ RP+ ++ + GS RS+ GFDI K + + Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL++ N + F K A + P ID +L+ +N + Sbjct: 414 LENFGGHTYAAGLSLREENLEAFTERFLKIASEEIIPEQMIPQIDIDAILDLKEINQKFV 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTFESQDSET-LQAIAFRVY 549 + L+ P+G N PVF K + ++V HL++ +S T + AIAF ++ Sbjct: 474 NDLKKMSPFGPDNQKPVFCSLGVKDYGTSKLVGKELEHLKLELIDGNSSTPMHAIAFGMH 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K ++ + N + G+ QL + D P Sbjct: 534 RYN----DHIKGMKPFNICYTVEENTYNGNTSIQLMIKDIKP 571 >gi|313500298|gb|ADR61664.1| Single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida BIRD-1] Length = 569 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 178/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L + +V+AI ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEAIDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A++NPN+ L GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCAFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D+ + + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + DG GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + + T DG L ++ L L AGP+G P P+ Sbjct: 432 GNFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF V E + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568 >gi|60683150|ref|YP_213294.1| putative single-stranded-DNA-specific exonuclease [Bacteroides fragilis NCTC 9343] gi|265767046|ref|ZP_06094875.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_16] gi|60494584|emb|CAH09385.1| putative single-stranded-DNA-specific exonuclease [Bacteroides fragilis NCTC 9343] gi|263253423|gb|EEZ24899.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_16] Length = 572 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W QE + A+ Q+ I ++ R+LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITQEQAEISRALAQELGISPVLGRLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLDL A++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNGNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ +M E+A K++ + + + IV+ Sbjct: 298 GKEAVDLLIEKDFSAALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F+ F + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF + + +VV H+++ + + + IAF Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|212693913|ref|ZP_03302041.1| hypothetical protein BACDOR_03435 [Bacteroides dorei DSM 17855] gi|265751302|ref|ZP_06087365.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_1_33FAA] gi|212663445|gb|EEB24019.1| hypothetical protein BACDOR_03435 [Bacteroides dorei DSM 17855] gi|263238198|gb|EEZ23648.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_1_33FAA] Length = 590 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 167/584 (28%), Positives = 273/584 (46%), Gaps = 22/584 (3%) Query: 17 RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W QE A A+ ++ I I+ ++L+ R ++ AK F P + L DP + Sbjct: 21 KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 79 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+ QA+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR +G Sbjct: 80 MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 139 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G +LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 140 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 199 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L LLDLVA++ D+V Sbjct: 200 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 254 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 255 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 314 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 315 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 373 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + + + Sbjct: 374 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEYC--RDL 430 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V ID ++ + Sbjct: 431 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 490 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 491 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 550 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N + QL++ D P E Sbjct: 551 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 589 >gi|189346100|ref|YP_001942629.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium limicola DSM 245] gi|189340247|gb|ACD89650.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium limicola DSM 245] Length = 571 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 167/577 (28%), Positives = 266/577 (46%), Gaps = 19/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + WV L QE + + + +AR L NR ++ + AK F PSI L P + Sbjct: 4 YSWVRLEPQE--KQVSLLAGAINVSHPLARALCNRGITTFEEAKTFFRPSISQL-SSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + ++AA R++ A+ N EKI+++GDYDVDG AL+ FL YI DR +G Sbjct: 61 LQNMERAAERVIAALNNHEKILLYGDYDVDGTTGTALLCLFLRDQGAEVFYYINDRFTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + G LIIT+DCG + +A++ GIDVIV DHH+ E PA+A+ Sbjct: 121 YGLSSEGIAYAEKSGVSLIITIDCGIRAGEAIERCAQAGIDVIVCDHHE-PDELPPAFAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + LC V F ++ + L LDLVA+AT D+V Sbjct: 180 LNPKVPECTYPFRELCGCAVAFRLVQAVAERLGAGE-----ESWKQYLDLVAIATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R L ++ + I + +T ++ + + P INA GR+ Sbjct: 235 SLEKENRILVNEGLKRIRISPRKSLSGMLSVMGIDAGTMTMYHIAFGLAPRINAAGRMHS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++L L++ A LD +N RR +++A+ +A+ + + S IV+ Sbjct: 295 AHLAVEWLLAATETGALETAQALDRMNLERREIDTAIFSRADRMI--EGHFASYCSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+R+ EK+ P+ + G GS RS+EG +I +++ Sbjct: 353 YDEEWHLGVLGIVASRMLEKYYLPTVIMGSMN-GMIKGSVRSVEGINIYEVLQEC--SDH 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 LV+ GGH AAG+T+ + F ++PA ID L + + Sbjct: 410 LVQFGGHNQAAGITLRPEDLAGFRKKFDNICAALLPADKRQKELVIDSSLQLEEITANFM 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++L+ PYG GN PVF L R++ H++ + + I F Sbjct: 470 NVLDQFAPYGFGNREPVFETSAVVLVGRPRLLKEKHVKFSVRDGNGRLFDVIGFDRKDVF 529 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + L G R + L W ++ QLR+ D Sbjct: 530 --QILDADPGIRFSMAYSLEKRSWNNREQWQLRLKDL 564 >gi|304396713|ref|ZP_07378593.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. aB] gi|304355509|gb|EFM19876.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. aB] Length = 578 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 182/564 (32%), Positives = 277/564 (49%), Gaps = 19/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ + R V L + L+P L+ + A + QA+ + +IM+ Sbjct: 23 LPPLLKRLYLQRGVRDA---AELERGAKNLLPY-QSLSGIESAVELLHQALLDGRRIMVV 78 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GA +I+TVD Sbjct: 79 GDFDADGATSTALTVMALRSMGGGNVQYLVPNRFEDGYGLSPEVVEQARARGAAMILTVD 138 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A GI V++ DHH A A+VNPN D L GV F Sbjct: 139 NGISSHAGVDFAHQHGIPVLITDHHLPGETLPAAEAIVNPNLPDCNFPSRALAGVGVAFY 198 Query: 218 VLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 +++ + LR +L +LDLVAL TV DVVPL NR V +GL R Sbjct: 199 LMLALRAHLRTQGWFGTTRTEPNLAEMLDLVALGTVADVVPLDVNNRILVWQGLSRIRAG 258 Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL++DD + ML Sbjct: 259 KCRPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLMTDDLSQARML 318 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391 A +LD LNQ R+ +E M +A A + + + WH G+VG+LA+RLK Sbjct: 319 ASELDALNQTRKEIEQGMQSEALALCQALEREQRDLPLGLAFYHPEWHQGVVGILASRLK 378 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 E+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL++E Sbjct: 379 ERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLNPGMMLKFGGHAMAAGLSLE 438 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F + + DG L ++ +ML AGP+G P P Sbjct: 439 TARYEEFRQRFADLVGEWLDGESLQGIIWSDGALQPQEFSLQTAEMLREAGPWGQAFPEP 498 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F KL R+V HL++ E + IAF V T + S +++ + Sbjct: 499 AFDGK-FKLLQQRLVGERHLKVMVEPLDGGPLIDGIAFNVDTTLWPD----SSIRQVELA 553 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL + P+ Sbjct: 554 YKLDINEYRGNRSVQLIIDHIWPL 577 >gi|294776722|ref|ZP_06742186.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides vulgatus PC510] gi|294449377|gb|EFG17913.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides vulgatus PC510] Length = 590 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 167/584 (28%), Positives = 272/584 (46%), Gaps = 22/584 (3%) Query: 17 RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W QE A A+ ++ I I+ ++L+ R ++ AK F P + L DP + Sbjct: 21 KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 79 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+ QA+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR +G Sbjct: 80 MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 139 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G +LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 140 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 199 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L LLDLVA++ D+V Sbjct: 200 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 254 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 255 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 314 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 315 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 373 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + + Sbjct: 374 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--RDL 430 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V ID ++ + Sbjct: 431 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 490 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 491 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 550 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N + QL++ D P E Sbjct: 551 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 589 >gi|150004614|ref|YP_001299358.1| putative single-stranded-DNA-specific exonuclease [Bacteroides vulgatus ATCC 8482] gi|149933038|gb|ABR39736.1| putative single-stranded-DNA-specific exonuclease [Bacteroides vulgatus ATCC 8482] Length = 573 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 167/584 (28%), Positives = 272/584 (46%), Gaps = 22/584 (3%) Query: 17 RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W QE A A+ ++ I I+ ++L+ R ++ AK F P + L DP + Sbjct: 4 KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+ QA+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR +G Sbjct: 63 MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G +LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L LLDLVA++ D+V Sbjct: 183 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 298 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + + Sbjct: 357 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 474 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N + QL++ D P E Sbjct: 534 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 572 >gi|237708535|ref|ZP_04539016.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724007|ref|ZP_04554488.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437671|gb|EEO47748.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229457464|gb|EEO63185.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 573 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 167/584 (28%), Positives = 273/584 (46%), Gaps = 22/584 (3%) Query: 17 RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W QE A A+ ++ I I+ ++L+ R ++ AK F P + L DP + Sbjct: 4 KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+ QA+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR +G Sbjct: 63 MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G +LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L LLDLVA++ D+V Sbjct: 183 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 298 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + + + Sbjct: 357 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 474 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N + QL++ D P E Sbjct: 534 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 572 >gi|53715216|ref|YP_101208.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fragilis YCH46] gi|52218081|dbj|BAD50674.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fragilis YCH46] Length = 572 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 277/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W QE + A+ Q+ I ++ R+LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITQEQAEISRALAQELGISPVLGRLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNMAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLDL A++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNGNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ +M E+A K++ + + + IV+ Sbjct: 298 GKEAVDLLIEKDFSAALEKAGQINQYNETRKDLDKSMTEEA-NKIVAELEGLVDRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F+ F + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVQAFTERFESFVSEHILPEQTSAVIDIDAEIDFKDITPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF + + +VV H+++ + + + IAF Sbjct: 474 NELKRFNPFGPDNQKPVFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|148549450|ref|YP_001269552.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida F1] gi|148513508|gb|ABQ80368.1| exonuclease RecJ [Pseudomonas putida F1] Length = 569 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 178/562 (31%), Positives = 279/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L + +V+AI ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEAIDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A++NPN+ L GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D+ + + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + DG GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + + T DG L ++ L L AGP+G P P+ Sbjct: 432 GNFPAFAKAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF V E + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568 >gi|282858559|ref|ZP_06267730.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bivia JCVIHMP010] gi|282588684|gb|EFB93818.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella bivia JCVIHMP010] Length = 574 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 166/585 (28%), Positives = 280/585 (47%), Gaps = 22/585 (3%) Query: 18 WV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 W Q+ + A + +K +I I+A +L+ R ++ + AK F P + L+ +P ++ Sbjct: 5 WKHISPTQQEESAAKELGEKLSISPILALILIRRGITTESAAKRFFRPQLADLI-NPFLM 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A R+ A+ E+I+++GDYDVDG SVAL+ +FL N + YIPDR +GY Sbjct: 64 KDMDAAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLRQYYSNIDYYIPDRYEEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ +LII +DCG + + + YA QGID I+ DHH PA A++ Sbjct: 124 GVSKKGIDFAKETSVKLIIILDCGIKAIEEITYAKEQGIDFIICDHHVPDEIMPPAVAIL 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP R DD HLC GV F + + N L+ LLD A++ D+VP Sbjct: 184 NPKRKDDSYPFKHLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIAADLVP 238 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 ++ NR GL + + GLKA+I+ + ++ + IGP INA GR+ Sbjct: 239 VVDENRILAYHGLKQLNQNPSLGLKAIIDICGLSERELEMSDIIFKIGPRINASGRMETG 298 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+ D E A +D N+ R+ ++ M E+A ++ + ++ + S IV+ Sbjct: 299 KESVDLLVERDFAEAVKAAKHIDEYNEQRKGVDRQMTEEANN-IVERLENQKHQSSIVLY 357 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + W G+VG++A+RL E + RP+ ++ + + GS RS+ GFDI + + +L Sbjct: 358 DEHWKKGVVGIVASRLTEIYFRPTIVLTKDGE-YATGSARSVAGFDIYEAIKSC--RDLL 414 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT++ + + Q F N + P+ ID ++ + L + Sbjct: 415 INFGGHTYAAGLTLKWADVKTFRERLQAFIDNHIQPHQQEPILNIDANIDFKDITKKLHN 474 Query: 495 MLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYG 550 L+ P+G NP P+F+ + +VV H+++ + + + IAF Sbjct: 475 DLKRFAPFGPSNPKPIFSTEGVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQSA 534 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N ++ QL++ D E Sbjct: 535 S----ARYIKSKRSFDIAFTIEENVFK-RNLVQLQIEDIRRTESE 574 >gi|224535855|ref|ZP_03676394.1| hypothetical protein BACCELL_00719 [Bacteroides cellulosilyticus DSM 14838] gi|224522578|gb|EEF91683.1| hypothetical protein BACCELL_00719 [Bacteroides cellulosilyticus DSM 14838] Length = 571 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 167/582 (28%), Positives = 275/582 (47%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ +LV R ++ AK F P + L DP + Sbjct: 4 KWNYQPITPEQAETSQKLAQELGISPILGGLLVQRGITKAQDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSTKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAAAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 183 LNAKRLDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAFHGLKQLNSNPSVGLKAIIDVCGLTEKDITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A +++ + + + IV+ Sbjct: 298 GKEAVDLLTEKDFSMALEKANQINQYNETRKDLDKTMTEEA-NQIVADLEGLAERRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F++F + T+ V ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTKRFEEFVSQNILPEQTSAVINIDAEIDFRDISPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ PYG NP P+F N + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPYGPDNPKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIQP 570 >gi|254883095|ref|ZP_05255805.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319643615|ref|ZP_07998235.1| single-stranded-DNA-specific exonuclease [Bacteroides sp. 3_1_40A] gi|254835888|gb|EET16197.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384784|gb|EFV65743.1| single-stranded-DNA-specific exonuclease [Bacteroides sp. 3_1_40A] Length = 590 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 167/584 (28%), Positives = 272/584 (46%), Gaps = 22/584 (3%) Query: 17 RWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W QE A A+ ++ I I+ ++L+ R ++ AK F P + L DP + Sbjct: 21 KWNYQPPSQEQTEAAKALAKETGISPILCKLLLERGITSAAEAKRFFRPQLNELH-DPFL 79 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+ QA+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR +G Sbjct: 80 MKDMSIAVERLNQAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYNEG 139 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G +LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 140 YGVSVKGVDYACETGVKLIIVLDCGIKAVEEIAYAKEKGIDFIICDHHVPDDILPPAVAI 199 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L LLDLVA++ D+V Sbjct: 200 LNAKRADNTYPYDHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSVASDIV 254 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 255 PIMGENRVLTHHGLKQLNSNPSVGLKAIIDVCGLSEKEITVGDIVFKIGPRINASGRIQN 314 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LLI D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 315 GKEAVELLIEKDFSAALEKANQINQYNETRKDLDKTMTEEA-NQIVDHLEGLADRRSIVI 373 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + + Sbjct: 374 YNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--RDL 430 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V ID ++ + Sbjct: 431 LENFGGHTYAAGLSMKVENVEEFTRRFETYVTEHILPEQTSAVIDIDAEIDFRDITPKFH 490 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 491 ADLKKFNPFGPDNHKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 550 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N + QL++ D P E Sbjct: 551 ----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPSE 589 >gi|26988210|ref|NP_743635.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida KT2440] gi|24982948|gb|AAN67099.1|AE016338_9 single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida KT2440] Length = 569 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L + +V+AI ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEAIDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A++NPN+ L GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D+ + + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + DG GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + + T DG L ++ L L AGP+G P P+ Sbjct: 432 ANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF + E + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568 >gi|304407546|ref|ZP_07389198.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus curdlanolyticus YK9] gi|304343497|gb|EFM09339.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus curdlanolyticus YK9] Length = 801 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 181/598 (30%), Positives = 285/598 (47%), Gaps = 30/598 (5%) Query: 14 SGFRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPD 71 S RW E +A + Q A+P +VAR+LV R + + A FL+ + L D Sbjct: 4 SKTRWSQPDWDERREQAAGHLMQALALPPLVARLLVGRGIESEEAATSFLHGGM-ELTHD 62 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P +L + A +RI AI + I I+GDYD DG +S +LM+ L + YIP R Sbjct: 63 PYLLAGMEAAVQRIRHAIEQEQWIRIYGDYDADGVSSTSLMIHLLERLGAKFDYYIPHRT 122 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N + ++ G +LIITVD G ++ D + YA +GI+V+V DHH+ A Sbjct: 123 REGYGMNCAAIDLAAEAGVKLIITVDTGISAVDEIAYAKAKGIEVVVTDHHEPPEVLPDA 182 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 Y+++NP L GV F + + L L D+VAL T+ Sbjct: 183 YSIINPKLPYCQYPYKSLAGVGVAFKLATALLGEAP-----------LDLTDIVALGTIA 231 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 DV+PL G NR V +GL + PG AL E + +T+ N+ + + P INA GR Sbjct: 232 DVMPLNGENRVLVRQGLKEMALRTRPGFLALAETAGVQLQAVTSTNVAFSMAPRINASGR 291 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-----I 365 + + LL + D + E+LA +LD LN+ R+ + M+++A ++ +C Sbjct: 292 LDHAGGAVELLTTSDQEAAELLAARLDALNRERQRIVEEMVDEAMSQWAEKCRIAAEACQ 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKM 424 +VIV+ G+ W+ G++G++A+++ E++ +P+ + + E GK GS RSI+GFD+ Sbjct: 352 SPPAVIVLAGEGWNAGVIGIVASKMLERYYKPTVVLGIDTETGKCKGSARSIDGFDLHAA 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 ++ + GGH AAG+T+ R L A + P ID + Sbjct: 412 LTAC--ADLFDHFGGHQAAAGMTLHRDKLDALEQSLSDSAMAWLSPEDWVPKTFIDLACS 469 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQ 542 ++ ID L P+GAGNP P F F + R + HL++ Q S L+ Sbjct: 470 PKEASLDTIDQLALLEPFGAGNPAPRFLFEQQPVTDKRTMGKESKHLRLALGGQPSR-LE 528 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 A+ F + G + + G L VN W G+++ QL + D F + Sbjct: 529 AVGFGFGEL----AERIAFGAQADLVGELSVNEWNGNRKPQLFIQDIRIANVQLFDWR 582 >gi|56963333|ref|YP_175064.1| single-strand DNA-specific exonuclease [Bacillus clausii KSM-K16] gi|56909576|dbj|BAD64103.1| single-strand DNA-specific exonuclease [Bacillus clausii KSM-K16] Length = 785 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 182/592 (30%), Positives = 292/592 (49%), Gaps = 27/592 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S RW L E A + + + + AR+LV R + ++ AK FL+ DP Sbjct: 4 SKTRWRILEQNEL--LAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYE-EPTFYDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L ++ RI A+ E+I++FGDYD DG +S ++M+ L + + YIP+R Sbjct: 61 FLLKGMEETIERIALAVKRKERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN ++ +G L+ITVD G ++ + +A + G+D I+ DHH+ A Sbjct: 121 EGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDIGLDFIITDHHEPPPVLPEAL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP + L GV F V + L + LLD + T+ D Sbjct: 181 AIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPE-----------ELLDYAVIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +VPLI NR KGL G PG++AL E + + A+++G+ IGP +NA GR+ Sbjct: 230 LVPLIDENRLLAKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +N LL++DD +E + LA ++D LN+ R+ + S M E+A +++ + I Sbjct: 290 DSANPAVELLLADDEEEAKALATEIDSLNKERQAIVSKMTEEAI-RLVETTYGTKIPHAI 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV + W+PG++G++A+RL E+F RP+ +S +E G GS RSIEGFD+ A Sbjct: 349 VVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY--QELANN 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH MAAG+T++ + L K A + + TP ID V V + Sbjct: 407 RDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTV 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 +I L++ P+G N P+ + +R + HL++ F + L IAFR+ Sbjct: 467 QVIGELQALAPFGVANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQ-KPLDGIAFRM 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 F + ++ G + +N W G + QL + D + +E F + Sbjct: 526 GHL----FEEITPHAKLSAIGTVSLNEWNGKVKPQLIIDDLAVLEWQLFDWR 573 >gi|170077601|ref|YP_001734239.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. PCC 7002] gi|169885270|gb|ACA98983.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. PCC 7002] Length = 666 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 174/589 (29%), Positives = 298/589 (50%), Gaps = 23/589 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW Q I + ++ + + +VA+VLVNRN+ + + AK ++ P + L Sbjct: 5 LPQQRWHIADRQPDITQ--SLVEAMGLNPLVAQVLVNRNIRTPEQAKIYIQPESQRLPAP 62 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 + D + + +AI I I GDYD DG S AL++R L H IP R+ Sbjct: 63 LVEFEDLALSVELLQEAIAEETLIAICGDYDADGMTSTALLLRALGHVGTKVTYAIPSRM 122 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYG N ++ + EG LI+TVD G ++Y+ + A + G+DVI+ DHH + + PA Sbjct: 123 KDGYGINERIVTELAEEGVGLILTVDNGISAYEPINLARDLGLDVIITDHHDLPDQLPPA 182 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP L +S L GV +++ V + + + + + +L+L L T+ Sbjct: 183 NAILNPKLLPTMSPYAGLAGVGVAYVLAVSLAQAVDKLEGLTS-----QILELFTLGTIA 237 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINAG 308 D+ PL G+NR ++ +GL + + G++AL++ + +++G+ +GP INA Sbjct: 238 DLAPLTGVNRRWLKRGLKLLPQSELAGVQALMQIAGVDDQKKQLKPDDIGFRLGPRINAV 297 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRI + LL +D+ AM+ + +N+ R+ M + + +A A V D Q Sbjct: 298 GRIDDPQKVIELLTTDEPGLALERAMQCEQINKQRQEMCTQIEAEAIALVEETPIDYQGQ 357 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V+VV + WH G++G++A+RL E++G P F + EEDGK GS R IE F++ + +++ Sbjct: 358 RVLVVCKEEWHHGVIGIVASRLVERYGVPVFICTAEEDGKIRGSARGIEEFNVFEALNYC 417 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +L K GGH A G ++ R N + +FAH ++ P+ KIDG +N + + Sbjct: 418 --QDLLGKFGGHKAAGGFSLARDNLAAFTEKLSEFAHQLLKPEHLKPLVKIDGAVNFTDL 475 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES---QDSETLQAIA 545 ++ P+G GNP P+F N ++ R + HL+ + + T++AIA Sbjct: 476 TPEFYQQIDQLHPWGIGNPEPIFWTKNVQILEQRTIGKNHLKFSLGQTIAGQTFTIKAIA 535 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + G++L + + L N W G +L ++ A P E Sbjct: 536 W-----QWGDYLPLPP--TLDIAYKLKENRWNGEVNLELELVGARPSEA 577 >gi|317505468|ref|ZP_07963386.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella salivae DSM 15606] gi|315663381|gb|EFV03130.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella salivae DSM 15606] Length = 583 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 162/587 (27%), Positives = 278/587 (47%), Gaps = 22/587 (3%) Query: 16 FRWVSLLGQEGINRA-LAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +A ++ K I I+A++L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYEPPTPQEKQASDELSGKLGIHPILAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + + G +LII +DCG + + A + GID I+ DHH E PA A Sbjct: 122 GYGVSEKGIAYAKETGVKLIIILDCGIKAIQEIALAKSLGIDFIICDHHVPDEEMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD LC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDSYPFKSLCGCGVGFKFMQGWAK-----NNGIPFSRLIPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+ NR GL + + GLKA+I+ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVTDENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRELSMSDIIFRIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A +D N+ R+ ++ M E+A ++++ + + S IV Sbjct: 297 NGKESVDLLVEKDYNIALKKAKHIDEYNEQRKDIDKQMTEEANV-IVSKLESQKHHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDLATGSARSVTGFDVYAAIKHC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT+ + FQ++ + + +T +D L+ + L Sbjct: 413 LLMNFGGHTYAAGLTLRWDDIPLFRKKFQQYVEDHIAPELTEATINLDAKLDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G P+F + +VV H+++ + S + IAF Sbjct: 473 FNDLKRFAPFGPECTKPLFFTQGVYDYGTSKVVGREQEHIKLELVDSKSSTVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 G+ + + + N ++ + QL++ D P E H Sbjct: 533 SGS----VRYIKSKRAFDIAYTIEANVFK-RNQVQLQIEDIRPEEEH 574 >gi|254229665|ref|ZP_04923075.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25] gi|262395208|ref|YP_003287062.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25] gi|151937786|gb|EDN56634.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25] gi|262338802|gb|ACY52597.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. Ex25] Length = 579 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 177/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L ++A + QAI ++I++ Sbjct: 18 SIPPILKRIYINRGITDPAQ---LETSARGLHSY-QKLGGIEQAVELLFQAIKEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLESCHFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKHNWFAEQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M ++A A + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGSELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + V DG L ++ + + L S GP+G Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|229086972|ref|ZP_04219129.1| Exonuclease RecJ [Bacillus cereus Rock3-44] gi|228696348|gb|EEL49176.1| Exonuclease RecJ [Bacillus cereus Rock3-44] Length = 779 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + + K + +V + + R + + DFLN R DP +L Sbjct: 7 RWKEKSFNE--EQVSELASKLQLSPLVTSLFLGRGLDTEDKIVDFLNTE-RQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ QAI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVKQAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A + GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKDLGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++V + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIVVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D +N+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDEMNKLRKDIVKQITEEAIAEV-ENNYPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E F RP+ + E GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVELFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ TP+ +D + V ++ I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVEELRRRLNEQADAILTPEDFTPITTVDAICKVEDVTLSAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M S TL I F Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMGLRSGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G +N W K+ QL + D + F + Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573 >gi|228999197|ref|ZP_04158778.1| Exonuclease RecJ [Bacillus mycoides Rock3-17] gi|228760542|gb|EEM09507.1| Exonuclease RecJ [Bacillus mycoides Rock3-17] Length = 779 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + ++R + + DFLN + DP +L Sbjct: 7 RWKEKSFNE--ELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFH-DPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D RI QAI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDLTVERIGQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN G LIITVD G + Q A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSDITEESIGFSIAPRINAIGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNYPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + E GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ + TP+ +D + V ++ I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G +N W K+ QL + D + F + Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573 >gi|119384612|ref|YP_915668.1| single-stranded-DNA-specific exonuclease RecJ [Paracoccus denitrificans PD1222] gi|119374379|gb|ABL69972.1| exonuclease RecJ [Paracoccus denitrificans PD1222] Length = 580 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 253/588 (43%), Positives = 354/588 (60%), Gaps = 11/588 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFL VE S++G W A A+ Q +P V+RVL R V A +L+P Sbjct: 3 AFLSVESSLTGRLWRG-PEATLERAAEALAQDSRLPLPVSRVLAARGVPAHEAPLYLDPK 61 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R L+PDP L D DKAA R+V A+ ++I IF DYDVDG AS AL++ +L +A Sbjct: 62 LRDLLPDPSSLRDMDKAAERLVAAVLAGQRIAIFADYDVDGGASAALLLDWLRRQGRDAT 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN + +++G LII VDCG+ S++AL DVIV+DHHQ Sbjct: 122 LYIPDRIDEGYGPNAPAIA-SLSQGHDLIICVDCGTLSHEALA---AASCDVIVLDHHQG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 P A+VNPNR D+ GHLCAAGVVFL LV +LR+D DL+ LLDL Sbjct: 178 GETLPPVLAVVNPNRADEDGSLGHLCAAGVVFLTLVRCNSLLRRDGH--PQPDLIPLLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G+NRA+V +GL+V R+ PGL AL + + S A +LG+++GP Sbjct: 236 VALATVADVAPLVGVNRAFVRQGLLVMARRERPGLVALSDVARLDSAPNAFHLGFLLGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGR+G ++LG+ L D ++ E LA +LDVLN++RR +E+A+ ++A A+V + D Sbjct: 296 INAGGRVGRADLGALCLSCTDGRQAERLAAELDVLNRDRRAIEAAVRDEALAQVEARASD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V GD WHPG+VG++AAR+KE G PS I E G G GS RS+ G D+G+ Sbjct: 356 ---SLVAWAAGDGWHPGVVGIVAARVKEATGLPSVVIG-VEGGIGKGSARSVPGVDLGRA 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGHAMAAGLT+E + + + +I G+++ Sbjct: 412 IQRLSAEGLLLKGGGHAMAAGLTIEEAKIPAAMERLSQLLSREMAERPGAGELRISGLMD 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 + + L+ MLE AGP+G P P FAF + S + +HL++ F S S L+A+ Sbjct: 472 PAGATVELMQMLERAGPFGQAAPAPRFAFAEQLIDSAGAMGDSHLRLRFRSPGSPVLEAV 531 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 A+ PLG L+ +RG+ H+ G L ++ W G +R +LR+ DA+PV Sbjct: 532 AWGAMNGPLGPALLGARGRCFHLAGKLELSQWGGRERVRLRLDDAAPV 579 >gi|89072534|ref|ZP_01159106.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium sp. SKA34] gi|89051638|gb|EAR57091.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium sp. SKA34] Length = 574 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 185/562 (32%), Positives = 280/562 (49%), Gaps = 20/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P I+ R+ +R + D L S + L+ + L A + +V A+ + +I+I Sbjct: 19 VPPILQRIYASRGIKND---AELERSAKGLL-NYNQLHGMTSAVQLLVDALSQNTRIIIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA+LI+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGCKNVDYLVPNRFDDGYGLSPEVVEQAIERGAELIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A +G+ V+V DHH A A+VNPN + LC GV F Sbjct: 135 NGVSSIAGVAVAKEKGLTVLVTDHHLPGDCLPIADAIVNPNLNECGFPSKALCGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LRQ +L LLDLVAL TV DVV L G NR V +GL R Sbjct: 195 LMLALRAELRQRGWFEQQGIAMPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++ALIE N S + +LG+ +GP INA GR+ + + G LL+ D+ Q Sbjct: 255 GKCRPGIQALIEVANRDSARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCDNIQSARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390 +A +LD LNQ R+ +E M ++A A + Q +V WH G++G+LA+R+ Sbjct: 315 MASELDGLNQTRKEIEQGMKDEALAICERLKFNQQDMPYGLVLFQRDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 K+K+ RP A + +G+ GS RSI G + + G+++K GGHAMAAGLT+ Sbjct: 375 KDKYHRPVIAFADAGNGEIKGSCRSITGLHMRDALDLVDTQNPGMILKFGGHAMAAGLTI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 F N + V DG L +N+ + ++L + GP+G P Sbjct: 435 PEDKLEAFSKAFDAVVRNALDEDALKGVLMTDGELGGHELNLDVAEILRAGGPWGQQFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L ++V HL++ E + AIAF V + +Q G + Sbjct: 495 PTFDGT-FRLLHQKLVGGKHLKIMVEPLSGGSVIDAIAFNVDVKRWPDASVQQVG----L 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589 L VN +RG++ QL V + Sbjct: 550 VYRLDVNEYRGNRSVQLMVEEL 571 >gi|166364907|ref|YP_001657180.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa NIES-843] gi|166087280|dbj|BAG01988.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa NIES-843] Length = 654 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 163/589 (27%), Positives = 288/589 (48%), Gaps = 19/589 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 RW + + ++ + ++A +L+NR + AK +++P L Sbjct: 8 QRWYIAATNP--EKIAGLAREMGLSSLLATILINRGIDTPELAKTYIDPEADTLPSPLGE 65 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +K+ +V+AI +KI I GDYD DG S +L++R L H N IP R+ +G Sbjct: 66 FPDLEKSVNLLVKAIARGDKIAICGDYDADGMTSTSLLLRALRHLGARVNHAIPSRMKEG 125 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++E+F G LI+TVD G ++++ + A G+ VI+ DHH + A A+ Sbjct: 126 YGINQRIVEEFAESGVGLILTVDNGISAHEPIALAIELGLKVIITDHHDLPPILPNASAI 185 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP L S L GV +++ V + + + + SLL L L T+ D+ Sbjct: 186 LNPKLLTPNSPYQGLAGVGVAYILAVTTAQKMGKLQGLT-----ESLLALFTLGTIADLA 240 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGRI 311 PLIG+NR ++ +GL + G+++L++ I + +++G+ +GP INA GRI Sbjct: 241 PLIGVNRRWLKRGLRKLPKSQLVGIQSLMQIAGISEEQKQLQPDDIGFKLGPRINAIGRI 300 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G+ + LL +D++ AM+ + +N+ R+ + + E+A V QQ V+ Sbjct: 301 GDPQIVIELLTTDEAGIALERAMQCEQINRTRQELCEKIEEEAIKLVEETPIFWQQDRVL 360 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WH G++G++A+RL E++G P F ++EE+ G G + + + + Sbjct: 361 VLVEKDWHHGVIGIVASRLVERYGVPVFIGTYEEEDTGKIRGSARGIEEFHVFEALQFCQ 420 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L K GGH MA G ++ N +F+H I+ P+ KID +L+ +N+ Sbjct: 421 DLLGKFGGHKMAGGFSLPTANLLAFKQRLSQFSHKILQIEQLKPLIKIDTILDFKQINLQ 480 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 L ++S P+G GN PVF PN ++ + + HL++ D+ ++A+A+R Sbjct: 481 LFQQIDSLQPWGIGNELPVFWTPNVRVVEQKTIGKNHLKLLLAQSDNTRIKALAWRWGEY 540 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAK 599 R+ + L N W G+ ++ ++ P E ++ K Sbjct: 541 C-------PLPTRLDIAYKLKENTWNGNTTIEIELVGVRLPQENNNIKK 582 >gi|229006744|ref|ZP_04164378.1| Exonuclease RecJ [Bacillus mycoides Rock1-4] gi|228754605|gb|EEM04016.1| Exonuclease RecJ [Bacillus mycoides Rock1-4] Length = 779 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + ++R + + DFLN + DP +L Sbjct: 7 RWKEKSFNE--ELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFH-DPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D RI QAI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDLTVERIGQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN G LIITVD G + Q A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSDITEESIGFSIAPRINAIGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNYPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + E GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ + TP+ +D + V ++ I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G +N W K+ QL + D + F + Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573 >gi|146308395|ref|YP_001188860.1| exonuclease RecJ [Pseudomonas mendocina ymp] gi|145576596|gb|ABP86128.1| exonuclease RecJ [Pseudomonas mendocina ymp] Length = 569 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 175/562 (31%), Positives = 281/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ + L+P L D A +V+A+ ++I+I Sbjct: 17 NLPPLLTRLYAARGV---QCAEELDKGLARLIP-FQQLKGIDAAVELLVEALQRRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + ++ + L + + +P+R GYG P ++ + L++TV Sbjct: 73 VGDFDADGATASSVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRQPDLLLTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH E A A+VNPN+ + GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCDFPSKAMAGVGVMF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLLALRARLRELGWFASRQEPNLGELLDLVALGSVADVVPLDANNRILVHQGLARIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALARDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + WH G++G+LA+RLKE Sbjct: 313 AVQLDQLNQDRKAIEQGMQREALAQL-KDLPLQDMPFGLCLFEPDWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ G I + A G++ K GGHAMAAGL++ + Sbjct: 372 RYHRPAIAFADAGEGMLKGSARSVPGLHIRDALDAVAARHPGLISKFGGHAMAAGLSLPQ 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NFG F + T DG L+A+ ++ L L +AGP+G P P+ Sbjct: 432 ENFGAFAAAFDAEVRRQLCEDDLTGRLLSDGQLDATEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F ++ R+V HL++ +++ S L IAF + E + V Sbjct: 492 FHG-VFQIVGQRIVGERHLKLVLKTECGSVQLDGIAFNIDR----EVWPNPTLRWAEVAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V +P Sbjct: 547 KLDLNEFRGNESVQLMVAHIAP 568 >gi|262277190|ref|ZP_06054983.1| single-stranded-DNA-specific exonuclease RecJ [alpha proteobacterium HIMB114] gi|262224293|gb|EEY74752.1| single-stranded-DNA-specific exonuclease RecJ [alpha proteobacterium HIMB114] Length = 580 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 206/583 (35%), Positives = 336/583 (57%), Gaps = 14/583 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 S+ G WV N A I++++ + + +R+L NRN++ ++FLNP I+ +P+ Sbjct: 5 SVQGKEWVLK--DFDKNLAEYISKEYNLDFLTSRLLANRNINQKNIENFLNPKIKNFLPN 62 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P D K I + I N KI IFGDYDVDGA S +M ++L +++ ++IPDR Sbjct: 63 PYNFKDMGKGLEIISRHIKNKNKICIFGDYDVDGATSSGIMSKYLEQLNIDHFVFIPDRQ 122 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGP+ IN+ LII +DCG+TS++A++YA ++ IDV+VIDHH+ + A Sbjct: 123 KDGYGPSVKTFTNIINKNVNLIIALDCGTTSFEAIEYARSKNIDVVVIDHHKSQETFPAA 182 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVAL 247 A++NPNR+D+ +LCAAGV+F+ LV + +ILR++ +LL LLDLV + Sbjct: 183 NAIINPNRIDETGDYYYLCAAGVLFIFLVGLNKILRENYYFNKAKVQEPNLLDLLDLVMM 242 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDVVPL+ LNRA+V +GL VA ++ N GLK L++ I ++ +GY++GP INA Sbjct: 243 GTVCDVVPLMDLNRAFVHQGLKVASKRHNLGLKTLVDYSKIKKKLSTYEVGYVLGPKINA 302 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIG+S LG LL +++++ +++ +L+ LN R+ +E ++E+A + + Sbjct: 303 GGRIGKSELGYNLLTTNNAETAYLISSELESLNLKRKDIEKKIVEEAISI----SERNND 358 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ + + WH G++G++A+RLK+ F +PSF IS + + GS RSI GFD+G ++ Sbjct: 359 EPIVFLSKNDWHEGLIGIVASRLKDHFNKPSFIISQKGED-CKGSARSIFGFDVGMAITK 417 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + I+ KGGGH MA G +++ + + + +ID L +SA Sbjct: 418 CKQLNIITKGGGHPMAGGFSLKSDKLEIFKNELINLFLKLKKNKD-NNIIEIDSYLESSA 476 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N LI+ L PYG+GN P+F F K+ + H+++ ++ + + AI+F Sbjct: 477 INDELIEKLNHLEPYGSGNREPIFGFEKFKVSKVIETKNNHVKVVL-NKGNFYIDAISFN 535 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG +LM + K ++ + +N W G + +L + D Sbjct: 536 SKNKDLGNYLMNFK-KEFNLVAKIKLNEWNGKSKIELIIDDIQ 577 >gi|303230873|ref|ZP_07317620.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica ACS-049-V-Sch6] gi|302514633|gb|EFL56628.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella atypica ACS-049-V-Sch6] Length = 664 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 191/580 (32%), Positives = 300/580 (51%), Gaps = 24/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 RW + + + ++ + IVAR++VNRN+ D FL +++ L+ DP L Sbjct: 4 KRWHIMPR--DTEKENTLIRELGVNPIVARLMVNRNIDSDEGHRFLEGTLKDLL-DPFTL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + A I++ I + I+++GDYDVDG + +L+ RFL + YIP+R +GY Sbjct: 61 KDMETAVALILETIEAKKSIVVYGDYDVDGITATSLLYRFLVKMRARVSYYIPERQSEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +E I++GA L+ITVDCG +SYD ++ ++ ID+I+ DHH + PA A++ Sbjct: 121 GLNLEALEHIISDGASLVITVDCGISSYDIVEAVCDR-IDIIITDHHTAPPQIPPARAVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 N + D +L GV F + ++ LRQ L LD+VAL TV DVVP Sbjct: 180 NHKQPDCPYTDKNLSGVGVAFKLCQALW--LRQCG-----EWYLDDLDIVALGTVADVVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V GL N G+ LI+ ITA ++G+ + P +NA GR+ + Sbjct: 233 LVGENRIIVQAGLKKMNELPNLGIDKLIDVAGLHDKTITAGHIGFTLAPRLNAAGRVTHA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++DD E +A +L N R+ +E ++ E+A A V Q V VV Sbjct: 293 TRAVELLVTDDVDLAETIAQELQETNMERQEIERSIHEEARANVAAQGHLA--DYVTVVA 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ WHPG++G++A+RL E+F +P+ IS ++G G GS RSIEGF+I + E IL Sbjct: 351 GENWHPGVIGIVASRLVEEFYKPTLVIS-IDNGVGKGSCRSIEGFNIYNALKSC--EDIL 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGHA AAG +++ L ++ V PV ID L +++ ++D Sbjct: 408 IQFGGHAAAAGFSIDASRIDELRHRLTEYCKVQVSPDEYIPVVSIDATLPVDDIDVDIVD 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + + PYG GN P+F + K+Q I ++ H ++ + + ++ AIA+ Sbjct: 468 RVSALEPYGMGNSTPIFGVMDAKVQDIMLMGQLKNHCKVILATANG-SVDAIAWNRPDL- 525 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F +G + V L N W+G QL + D P+ Sbjct: 526 ---FRHIFQGMNVKVAFTLQKNEWQGFVSPQLMIQDIEPI 562 >gi|284929094|ref|YP_003421616.1| exonuclease RecJ [cyanobacterium UCYN-A] gi|284809553|gb|ADB95258.1| exonuclease RecJ [cyanobacterium UCYN-A] Length = 650 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 171/586 (29%), Positives = 294/586 (50%), Gaps = 18/586 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 + RW + + + ++ I D++ +V++NR + A+ +LNP+ +L P Sbjct: 3 LPNQRWDVISPNP--EKIQLLAEEMKISDLIVKVILNRGIDTSSLARIYLNPNEEILPPP 60 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D K+ + +AI KI I GDYD DG S +L++R L + + + IPDRI Sbjct: 61 LAEFPDLYKSISLLTRAIKEKSKIAICGDYDADGMTSTSLLLRALKYFGGDIHYKIPDRI 120 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYG N ++E G +LI+TVD G ++YD +Q A G++VI+ DHH + + PA Sbjct: 121 KDGYGINTQIVENLAKNGVELILTVDNGISAYDPIQRAVELGVNVIITDHHDIPKKLPPA 180 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP L S L GV +++ + + + L + + + SLL+L L T+ Sbjct: 181 DAILNPKLLSHESPYSGLAGVGVAYILALTLAQTLNKTEGI-----IASLLELFTLGTIA 235 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAG 308 D+ PLIG+NR ++ +GL PG++ALI+ I + ++++G+ +GP INA Sbjct: 236 DLAPLIGVNRRWLKQGLKQLPNSQLPGIQALIKVSGISDEQKQLRSDDIGFKLGPRINAV 295 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRIG+ + LL +DD + A++ + +N R+ + + ++A V + Q+ Sbjct: 296 GRIGDPKVAIELLTTDDPELALEKALECEEINNVRKSLCEKIEKEAINLVENTPLNYQEK 355 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V+VV D WH G++G++A+RL E++G P F ++EE+ G + + + Sbjct: 356 RVLVVIKDEWHHGVIGIVASRLVERYGVPVFIGTYEENDIEKIRGSARGIPEFDVFNALQ 415 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +L K GGH A G ++R +F+H + P+ KID +N + Sbjct: 416 YCDDLLDKFGGHKAAGGFGLKRKYLNSFEKRLSEFSHQHLKLHHIKPLIKIDSEINFKDI 475 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 N L + L+S P+G GN P+F PN + +++ HL+++ D E ++AIA+R Sbjct: 476 NHNLYETLDSLQPWGIGNAIPIFWTPNVIILKQKIIGDNHLKISLVQNDGEKIEAIAWRF 535 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 K++ + L N W G QL ++ E Sbjct: 536 GTYY-------PLPKQLDIAYKLSKNSWNGKSNIQLEIVGIRLPES 574 >gi|229013626|ref|ZP_04170757.1| Exonuclease RecJ [Bacillus mycoides DSM 2048] gi|228747685|gb|EEL97557.1| Exonuclease RecJ [Bacillus mycoides DSM 2048] Length = 773 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + + R ++ + DFLN + DP +L Sbjct: 7 RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIADFLN-TADQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ A P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G + +N W K+ QL V D + F + Sbjct: 529 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|28897285|ref|NP_796890.1| ssDNA exonuclease RecJ [Vibrio parahaemolyticus RIMD 2210633] gi|260363585|ref|ZP_05776405.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus K5030] gi|260876250|ref|ZP_05888605.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus AN-5034] gi|260896428|ref|ZP_05904924.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus Peru-466] gi|260902721|ref|ZP_05911116.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus AQ4037] gi|28805494|dbj|BAC58774.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus RIMD 2210633] gi|308088410|gb|EFO38105.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus Peru-466] gi|308092897|gb|EFO42592.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus AN-5034] gi|308107644|gb|EFO45184.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus AQ4037] gi|308113319|gb|EFO50859.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus K5030] Length = 579 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 176/569 (30%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L ++A + QAI ++I++ Sbjct: 18 SIPPILKRIYINRGITD---IAQLETSARGLHSY-QKLGGIEQAVELLFQAIQEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCTFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L ++ + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + V DG L ++ + + L + GP+G Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIAEQLRAGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|149279018|ref|ZP_01885152.1| single-strand DNA specific exonuclease [Pedobacter sp. BAL39] gi|149230297|gb|EDM35682.1| single-strand DNA specific exonuclease [Pedobacter sp. BAL39] Length = 566 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 163/577 (28%), Positives = 267/577 (46%), Gaps = 17/577 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RWV Q ++ Q+ I +A++LV R + + + AKD+ P + L DP + Sbjct: 3 KRWVQ-AVQGNYVHIDSLAQQLNIDRSLAQILVQRGIITFEQAKDYFRPQLSQLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI +A+ SEKI+I+GDYDVDG SVAL F S + YIPDR +G Sbjct: 61 MKDMMKAVLRIEEALAASEKILIYGDYDVDGTTSVALAYSFFSQFTTKIEYYIPDRHKEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LI+ +DCG S D + YAT GID I+ DHH E A AL Sbjct: 121 YGISTQGIDYASANGYSLIVALDCGIKSVDKVAYATGLGIDFIICDHHMPGEELPAAAAL 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + D L G+ F + LDLV ++ D+V Sbjct: 181 LDPKQSDCEYPFKELAGCGIGFKLAQAYCIKHGL-----PAEKYERYLDLVMVSIAADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ NR GL+ GLKAL++ S T ++ + + P INA GR+ + Sbjct: 236 PVEDENRILAYHGLIKLNTAPCMGLKALMDISGRSKQYTLTDVVFSLAPRINAAGRMDHA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N ++L+ + + +D+ N R+ + + +A A + C+ + VV Sbjct: 296 NQAVKMLLCTEDTIALAQSEFIDLQNTERKTSDQNITAEALALI-ADCEILINKKTTVVY 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + W+ G++G++A+RL EK+ RP+ ++ + +G GS RS+ GFD+ + + + +L Sbjct: 355 HESWNKGVIGIVASRLTEKYYRPTVVLT-KSNGLLTGSARSVAGFDLYEALLGC--QDLL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 V+ GGH AAGLT+E F++ + + + P ID + ++ Sbjct: 412 VQFGGHKFAAGLTIEPEKIDAFSARFEEIVSSTITEDLLCPEISIDAEIQLQQIDGKFQR 471 Query: 495 MLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 ++ P+G NP PVF + VV HL+++ + Q+S ++I F Sbjct: 472 IISQMSPFGPHNPAPVFISHGVTMVGRPYVVATKHLKLSVKQQNSPIFESIGFNFAEHE- 530 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + N W+ +R QL + Sbjct: 531 ---SLLRPNVPFSICYTIEENVWKDQRRLQLNIKGIK 564 >gi|67923725|ref|ZP_00517191.1| RecJ exonuclease [Crocosphaera watsonii WH 8501] gi|67854433|gb|EAM49726.1| RecJ exonuclease [Crocosphaera watsonii WH 8501] Length = 654 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 169/583 (28%), Positives = 286/583 (49%), Gaps = 20/583 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 + RW + + + + ++A+V++NR + A+ ++NP L PD Sbjct: 3 LPDQRWYIASPNPD--QVKKLVAETGLSPLLAQVILNRGIDSPQLAQVYINPETENL-PD 59 Query: 72 PLI-LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 PL D + + +AI EKI I GDYD DG S +L++R +H +A IP R Sbjct: 60 PLTEFPDLFPSIELLKEAIETGEKIAICGDYDADGMTSTSLLLRAFNHFGGDAYYEIPSR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + DGYG N ++EKF EG +++TVD G ++Y+ ++ A G+ VI+ DHH + + P Sbjct: 120 MKDGYGINERIVEKFAEEGVGVVLTVDNGISAYNPIKLAVELGLTVIITDHHDLPEKLPP 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP L S L GV +++ V + L++ + + + SLL+L L T+ Sbjct: 180 ADAILNPKLLPIQSPYRGLAGVGVAYILAVTLAEALQKSDGI-----IDSLLELFTLGTI 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307 D+ PL+G+NR ++ KGL G++AL++ + +++G+ +GP INA Sbjct: 235 ADLAPLVGVNRRWLKKGLKQLPNSQLVGIQALMQVAGVSEEQKQLKPDDIGFKLGPRINA 294 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ LLI+DD AM+ + +N R+ + + ++A + T D ++ Sbjct: 295 VGRIGDPETAIELLITDDPAIALERAMQCEQINSQRKSLCEEIEQEAIHLIRTTPIDYKR 354 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+VV +WH G++G++A+RL E++G P F ++EE G + + S Sbjct: 355 DRVLVVVHPQWHHGVIGIVASRLVERYGVPVFIGTYEEADYSKIRGSARGIEEFNIFESL 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 +L K GGH A G + N + +FAH ++ P+ KIDG + Sbjct: 415 VYCYDLLGKYGGHKAAGGFGLGSDNLIAFQERLSQFAHQLLEPHHLKPLVKIDGQADFKQ 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 + L + ++S P+G N PVF PN K+ R V HL++ D + ++AIA+R Sbjct: 475 LKTQLYENIDSLQPWGIQNAFPVFWTPNVKILEQRTVGKNHLKLVLGQDDGQEIKAIAWR 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L N W G+ +L ++ Sbjct: 535 FGSYF-------PLPKCLDIAYKLTENNWNGAVNIELEIVGVR 570 >gi|308187995|ref|YP_003932126.1| Single-stranded DNA-specific exonuclease [Pantoea vagans C9-1] gi|308058505|gb|ADO10677.1| Single-stranded DNA-specific exonuclease [Pantoea vagans C9-1] Length = 578 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 182/564 (32%), Positives = 276/564 (48%), Gaps = 19/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ + R V L + L+P L+ + A + QA+ + +IM+ Sbjct: 23 LPPLLKRLYLQRGVCDA---AELERGAKNLLPY-QSLSGIESAVALLHQALLDGRRIMVV 78 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GA +I+TVD Sbjct: 79 GDFDADGATSTALTVMALRSMGGGNVQYLVPNRFEDGYGLSPEVVEQARARGAAMILTVD 138 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A GI V++ DHH A A+VNPN D L GV F Sbjct: 139 NGISSHAGVECAHQHGIPVLITDHHLPGETLPAAEAIVNPNLPDCNFPSRALAGVGVAFY 198 Query: 218 VLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 +++ + LR +L +LDLVAL TV DVVPL NR V +GL R Sbjct: 199 LMLALRAHLRTQGWFGATRAEPNLAEMLDLVALGTVADVVPLDVNNRILVWQGLSRIRAG 258 Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL++DD + ML Sbjct: 259 KCRPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLMTDDLSQARML 318 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391 A +LD LNQ R+ +E M +A A + + WH G+VG+LA+RLK Sbjct: 319 ASELDALNQTRKEIEQGMQSEALALCQALEREQSDLPLGLAFYHPEWHQGVVGILASRLK 378 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 E+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL++E Sbjct: 379 ERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLNPGLMLKFGGHAMAAGLSLE 438 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F + + DG L ++ +ML AGP+G P P Sbjct: 439 TARYEEFRQRFADLVGEWLDGESLQGIIWSDGALQPQEFSLQTAEMLREAGPWGQAFPEP 498 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F KL R+V HL++ E + IAF V T + S +++ + Sbjct: 499 AFDGK-FKLLQQRLVGERHLKVMVEPLNGGPLIDGIAFNVDTTLWPD----SSIRQVELA 553 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL + P+ Sbjct: 554 YKLDINEYRGNRSVQLIIDHIWPL 577 >gi|229135232|ref|ZP_04264031.1| Exonuclease RecJ [Bacillus cereus BDRD-ST196] gi|228648274|gb|EEL04310.1| Exonuclease RecJ [Bacillus cereus BDRD-ST196] Length = 781 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 285/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + + R ++ + DFLN + + DP +L Sbjct: 15 RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLNTTDQEFH-DPFLL 71 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 72 EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 131 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 132 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 191 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 192 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 240 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 241 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 300 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 301 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 359 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 360 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 417 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ A P+ +D V +A I Sbjct: 418 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 477 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 478 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 536 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G + +N W K+ QL V D + F + Sbjct: 537 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 581 >gi|256425938|ref|YP_003126591.1| single-stranded-DNA-specific exonuclease RecJ [Chitinophaga pinensis DSM 2588] gi|256040846|gb|ACU64390.1| single-stranded-DNA-specific exonuclease RecJ [Chitinophaga pinensis DSM 2588] Length = 568 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 160/578 (27%), Positives = 266/578 (46%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW Q + I ++ R+LV R + + D ++ F P++ L DP + Sbjct: 3 KRWTVRSYQPKQEAL--LQSSLRIHPLLCRLLVQRGMHTYDESRLFFRPTLADLH-DPWL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA RI QA ++ EKI++FGDYDVDG +VA + FL N YIP R +G Sbjct: 60 MKDMDKAVSRIEQAFFHREKILVFGDYDVDGTTAVATVYDFLHSLYNNIEFYIPHRYKEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +E + LIIT+DCG + D +++A + GID I+ DHH + PA A+ Sbjct: 120 YGISTQGIEYARDNEFTLIITLDCGIKAIDQIKWAADNGIDFIICDHHLPDAILPPAVAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D L G+ + ++ + + + LDLVA + D+V Sbjct: 180 LNPKQYDCPYPYKELSGCGIGYKLISAFAQKKGI-----PDEQVHRYLDLVATSIAADIV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL G++ALIE + +T NL ++I P +NA GR+ ++ Sbjct: 235 PMTGENRVLAFHGLKKVNSAPLAGIQALIELSGLKEQLTISNLVFVIAPRVNAAGRMDDA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L + D + +A L N +R+ ++ + ++A + ++ V+ Sbjct: 295 RKAVNLFVETDKDKAMEIAKVLHADNFDRKEIDGNITKEAVELLQNDLT-LKDKKSTVLY 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G+VG++A+RL +K+ I + K GS RS+ GF++ + + + +L Sbjct: 354 KPDWHKGVVGIVASRLIDKYYYRPTIILTLSNDKVAGSARSVTGFNVYEAIHQC--KDLL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGH AAG+T++ N F++ + + P ID ++ + A + Sbjct: 412 ENYGGHFYAAGMTLKPENVEAFQQKFEEVVATTINPDLLVPEIVIDTEIHLKDITPAFFN 471 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTP 552 +L P G N PVF N R+V H++ + + S L I F + Sbjct: 472 ILRQFEPLGPENLRPVFLVRNVVDSGYSRLVKDEHIKFSVKQGKSPNALTGIGFYMSE-- 529 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +F + S + + + N W G QL+V+D Sbjct: 530 --KFHIVSSKQPFDMAFTIDENEWNGKMNLQLKVIDIR 565 >gi|270264902|ref|ZP_06193166.1| ssDNA exonuclease RecJ [Serratia odorifera 4Rx13] gi|270041200|gb|EFA14300.1| ssDNA exonuclease RecJ [Serratia odorifera 4Rx13] Length = 577 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 181/565 (32%), Positives = 276/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ R V + L S++ ++P L D A + QA+ S +IM+ Sbjct: 21 GLHPLLRRLYALRGVKAEQE---LERSVKGMLP-WQQLDGIDTAVGILQQALAASRRIMV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + + +P+R DGYG +P ++E+ GA+LI+TV Sbjct: 77 VGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPEVVEQAAARGAELILTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A +G+ V+V DHH A A+VNPN L GV F Sbjct: 137 DNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLRGCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMLALRARLRESGWFEQRALAMPNLAELLDLVALGTVADVVPLDANNRILVYQGLNRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 257 AGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 MLA LD LN RR +E M +A + + + WH G+VG+LA+R Sbjct: 317 MLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + +G GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + V DG L +++ ++L GP+G P Sbjct: 437 LEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLETAELLREGGPWGQAFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F ++ R+V HL++ E L IAF V T + S + + Sbjct: 497 EPTFDGR-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG++ QL + P Sbjct: 552 LAYKLDVNEFRGNRNVQLLIQHLWP 576 >gi|65321775|ref|ZP_00394734.1| COG0608: Single-stranded DNA-specific exonuclease [Bacillus anthracis str. A2012] Length = 779 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573 >gi|228993148|ref|ZP_04153070.1| Exonuclease RecJ [Bacillus pseudomycoides DSM 12442] gi|228766607|gb|EEM15248.1| Exonuclease RecJ [Bacillus pseudomycoides DSM 12442] Length = 779 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + ++R + + DFLN + DP +L Sbjct: 7 RWKEKSFNE--ELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFH-DPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D RI QAI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDLTVERIGQAIQNGEQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN G LIITVD G + Q A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNYLPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + E GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ + TP+ +D + V ++ I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G +N W K+ QL + D + F + Sbjct: 527 --AYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVDAWQLFDWR 573 >gi|153839364|ref|ZP_01992031.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus AQ3810] gi|149747112|gb|EDM58100.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus AQ3810] gi|328472049|gb|EGF42926.1| ssDNA exonuclease RecJ [Vibrio parahaemolyticus 10329] Length = 579 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 175/569 (30%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L ++A + QAI ++I++ Sbjct: 18 SIPPILKRIYINRGITD---IAQLETSARGLHSY-QKLGGIEQAVELLFQAIQEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L ++ + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + V DG L ++ + + L + GP+G Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIAEQLRAGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|313675542|ref|YP_004053538.1| exonuclease recj [Marivirga tractuosa DSM 4126] gi|312942240|gb|ADR21430.1| exonuclease RecJ [Marivirga tractuosa DSM 4126] Length = 569 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 166/578 (28%), Positives = 270/578 (46%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W+ + ++Q I +++++L++R +S + AK F PSI DP + Sbjct: 5 KKWII-ASEPEQKMIHELSQSININPVLSKILLSRGISNFEEAKTFFRPSIED-CHDPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+++A+ N E I+++GDYDVDG+ SVA+M FL N YIPDR V+G Sbjct: 63 MKDMPIAVERLIKALDNHESILVYGDYDVDGSTSVAMMYSFLKSYCKNLYYYIPDRYVEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ + LII++DCG + D + YA ++ ID I+ DHH + A A+ Sbjct: 123 YGISYKGIDYAKEKNCSLIISLDCGIKAIDKVDYANSENIDFIICDHHNPSEKLPQAVAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L GV F ++ LLDLVA++ D+V Sbjct: 183 LDPKRKDCPYPFKELSGCGVGFKLIQAFCIQKEIPEHHAF-----ELLDLVAISIAADIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 + G NR GL PG+KALI+ + IT NL + +GP INA GRI + Sbjct: 238 AVTGENRILAFYGLEKINFNPRPGIKALIQASGLKEKITISNLVFQLGPRINAAGRIDHA 297 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +L RLL + E ++A + N R+ + + +A + + + + A V+ Sbjct: 298 HLAVRLLTAIHEDEALIIAENVSHKNTTRKDFDQNITSEALSTI-EENTSMLSAKSTVLF 356 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G++G++A+R E RP+ ++ E +GK GS RS++GFD+ + E L Sbjct: 357 NKNWHKGVIGIVASRCIEHHYRPTIIMT-ESNGKATGSARSVDGFDLYSAIESCKEY--L 413 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT+ F+ + P KID + + Sbjct: 414 EQFGGHKHAAGLTLAIDQIPSFAAAFEAVVQKNITEDQLIPKVKIDSYIEIDQITDKFYS 473 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTP 552 +L P+G GN PVFA N + ++ HL++T + + + + AI F + Sbjct: 474 ILSQMDPFGPGNMQPVFAAKNLSVLGEPLILKEKHLKLTVKDRSGKNKITAIGFGMAEYK 533 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + N++ G K QL + D Sbjct: 534 A----LIMNSNAFELAFTIQENHFNGLKSLQLYLKDIR 567 >gi|310822730|ref|YP_003955088.1| single-stranded-DNA-specific exonuclease recj [Stigmatella aurantiaca DW4/3-1] gi|309395802|gb|ADO73261.1| Single-stranded-DNA-specific exonuclease RecJ [Stigmatella aurantiaca DW4/3-1] Length = 570 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 184/585 (31%), Positives = 299/585 (51%), Gaps = 26/585 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW+ + + ++ ++ + + ARVL++R + + FL+ + L PDP +L Sbjct: 2 RWLL--PEAVDQQVASLARELGLHPLSARVLLHRGYRTPEAVSAFLSDKLADL-PDPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 A R+ +A+ EKI ++GDYDVDG S +L+ FL YIP R+ +GY Sbjct: 59 KGMTSAVERLARALRLGEKITLYGDYDVDGVCSTSLLTLFLRQLGAQPATYIPHRLGEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N M++ EG +L++T+DCG TS + A G+DV+++DHH V + A A++ Sbjct: 119 GLNLQAMDRIAQEGTRLLVTLDCGITSVAEVARARELGMDVVIVDHHTVPTTLPAAVAVL 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253 NP++ LCAAGV F + + + + LR + L L+DLVALATV DV Sbjct: 179 NPHQPGCDYPTKTLCAAGVAFNLCMGLRKHLRDEGFFATRKEPLLKGLMDLVALATVADV 238 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRI 311 VPL G NR V GL PG++AL E + P+TA +G+ +GP INA GR+ Sbjct: 239 VPLTGANRILVAHGLQELTAARRPGVRALKEVAGVEPEAPVTAGQVGFRLGPRINAAGRL 298 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +++LG +LL ++ ++ LA LD N R+ +ES++L +A Q + + A + Sbjct: 299 HDASLGLQLLTAESLEDARRLAGVLDRANAERQGIESSILTEAL----KQAESLPHARGL 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WHPG++G++A+R+ E+F RP+ + E G G GS RSIEGF + + Sbjct: 355 VLYAEGWHPGVIGIVASRVVERFHRPTVMVGVNE-GIGKGSARSIEGFHLYDALHGC--A 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L + GGH AAGLT+E + F++ A + P K+D V+ ++ Sbjct: 412 DMLSRFGGHKYAAGLTIEAGRLPAFREAFERIALERLTPEDLIPRCKVDAVVTPHELDER 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV----NLAHLQMTFESQDSETLQAIAFR 547 ++ L+ GP+G GNP PV ++ RV+ H + D+ + AI F Sbjct: 472 AVESLQRLGPFGQGNPEPVLVLRK-QMARPRVLPPKTGHGHAHLKLALVDAPGVDAIGFG 530 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + + + ++ +RG +R LR+ D Sbjct: 531 MADR------LSLVEGPVDLAFQVGMDTFRGQRRVSLRLKDLRIA 569 >gi|39997708|ref|NP_953659.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sulfurreducens PCA] gi|39984600|gb|AAR35986.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sulfurreducens PCA] gi|298506642|gb|ADI85365.1| single-stranded DNA-specific exonuclease RecJ [Geobacter sulfurreducens KN400] Length = 578 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 175/578 (30%), Positives = 282/578 (48%), Gaps = 17/578 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + + +++ ++ ++AR+L NR V+ + FL ++ L DPL+ Sbjct: 7 KVWTIREPDRDV--VVRLSRDLSLDPLLARLLANRGVTDGIDGRRFLGATLADLR-DPLL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D A R+ A+ N E++ ++GDYDVDG AL++ F +IP R+ DG Sbjct: 64 LRGMDAAVERLCAALRNGEQVCVYGDYDVDGVTGTALLVSFFREVGFTCRYHIPKRLSDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + GA++I+TVDCG S + G+D+I+ DHH E A A+ Sbjct: 124 YGLSEDGIRAVAERGARVIVTVDCGIGSVAEADLCASLGVDLIITDHHSPGPELPRALAV 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCD 252 +NP + L GV F +L+ + LR+ +L LDLVAL T+ D Sbjct: 184 INPRQPGCSYPFKSLAGVGVAFNLLIALRGRLREQGCFTAGPEPNLRQYLDLVALGTIAD 243 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 VVPL+ NR +V GL G+ AL + ++ + +G+ + P +NA GR+ Sbjct: 244 VVPLVEENRIFVTYGLKEMSATSRVGVTALKDVAGVAGRVGCGAVGFRLAPRLNAAGRLE 303 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++LG LL++ D LA +LD N R+ +E ++L++A A V + S+ V Sbjct: 304 DASLGVELLLTGDRSRAATLAAELDRSNGERQALERSILDEATAMVRANPAMASKRSI-V 362 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + D WHPG+VG++A+RL ++F RP+ I+ ++ G G GSGRS+ + +S E Sbjct: 363 LASDAWHPGVVGIVASRLVDRFHRPTILIALQD-GTGRGSGRSVPALHLLDALSACGEH- 420 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L K GGH AAGL+++ D F+ ++ PV D L A V AL Sbjct: 421 -LEKFGGHRQAAGLSIDEETLQAFVDRFEDVCAGLLGPDDLKPVVAADAELAADEVTPAL 479 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +D++E+ P+G GNP P+F + RV HLQ+ + A+ F + Sbjct: 480 VDLIEALEPFGMGNPEPLFLLRGATICGRRVAGGHHLQLRL-DLGGRQVDAVGFNLAARD 538 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G+R+ + N W G ++ QL + D Sbjct: 539 ------GAPGERVDILFTAGWNSWNGRRKFQLTLKDLK 570 >gi|30264479|ref|NP_846856.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Ames] gi|47529937|ref|YP_021286.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. 'Ames Ancestor'] gi|49187299|ref|YP_030551.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Sterne] gi|165872010|ref|ZP_02216651.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0488] gi|170709257|ref|ZP_02899677.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0389] gi|190566914|ref|ZP_03019830.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis Tsiankovskii-I] gi|227817187|ref|YP_002817196.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. CDC 684] gi|229602672|ref|YP_002868695.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0248] gi|254724665|ref|ZP_05186448.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A1055] gi|254751352|ref|ZP_05203389.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Vollum] gi|254757684|ref|ZP_05209711.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Australia 94] gi|30259137|gb|AAP28342.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Ames] gi|47505085|gb|AAT33761.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. 'Ames Ancestor'] gi|49181226|gb|AAT56602.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Sterne] gi|164712300|gb|EDR17836.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0488] gi|170125833|gb|EDS94740.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0389] gi|190561905|gb|EDV15874.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis Tsiankovskii-I] gi|227004863|gb|ACP14606.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. CDC 684] gi|229267080|gb|ACQ48717.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0248] Length = 779 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573 >gi|163731960|ref|ZP_02139407.1| single-stranded-DNA-specific exonuclease RecJ, putative [Roseobacter litoralis Och 149] gi|161395414|gb|EDQ19736.1| single-stranded-DNA-specific exonuclease RecJ, putative [Roseobacter litoralis Och 149] Length = 580 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 245/599 (40%), Positives = 338/599 (56%), Gaps = 33/599 (5%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLG+E S++G RWV E A + Q+ +P V +VL R V + A+ FL P+ Sbjct: 2 SFLGIERSLTGRRWVG-PTAEMERAAQTLEQRADLPAPVCQVLARRGVQAEDAQSFLAPA 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R LMPDP L D KAA R + A+ EKI IF DYDVDG +S AL++ +L A Sbjct: 61 LRDLMPDPRSLKDMTKAATRFLDAVRKREKIAIFADYDVDGGSSAALLLSWLRQTGREAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M + LI+ VDCG+ S+ + A G DV+V+DHH Sbjct: 121 LYIPDRIDEGYGPNDEAMAQLAR-AHDLIVCVDCGTLSHGPIAAAV--GADVLVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 E A A+VNPNR D+ GHLCAAGVVFL+LV + R+LR+ + + DL+S LDL Sbjct: 178 TEELPAALAVVNPNRQDESGDLGHLCAAGVVFLLLVELRRLLREAGQ--TSPDLMSFLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G+NRA+V +GL V R+ GL AL + + + A +LG+++GP Sbjct: 236 VALATVADVAPLVGINRAFVRQGLKVLARRERIGLTALADVAGVDTEPNAYHLGFILGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG ++LG+RLL ++D E LA +LD LN RR +E+A+ A A+ + D Sbjct: 296 VNAGGRIGAADLGARLLATNDPHEAAALAERLDKLNTERREIEAAVRATALAQAEERGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ G WHPG+VG++A+RLKE GRPS I + G G GSGRS+ G D+G+ Sbjct: 356 ---RPLVWAAGADWHPGVVGIVASRLKEAAGRPSIVIGISD-GIGKGSGRSVSGIDLGQP 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTVE + + I IDG+L Sbjct: 412 IQRLAAEGLLLKGGGHKMAAGLTVEESKIETAMARLSELLEKQGASSIGAADLHIDGMLM 471 Query: 485 ASAVNIALIDMLES-----------AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 A + L+ +E + F N ++ + V HL+++F Sbjct: 472 PEAAAVELVQKIEQAGPFGAAAPAP-----------RYVFANVAVRFAKRVGENHLKLSF 520 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 S ++ AI F Y T LG L G R H+ G L +N WRG + QLR+ DA+P Sbjct: 521 GSDAG-SMDAICFGAYDTDLGPTLETHGGARFHLAGRLDINTWRGRQSVQLRLEDAAPA 578 >gi|170723303|ref|YP_001750991.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida W619] gi|169761306|gb|ACA74622.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida W619] Length = 569 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 281/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L D A +V+A+ ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIDAAVDLLVEALDQRQRIII 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH + A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLKVLVTDHHLPGQQLPVADAIVNPNQPGCDFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALALDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RLKE Sbjct: 313 AQQLDGLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDAE-WHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + + T DG L ++ L L AGP+G P P+ Sbjct: 432 GNFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF + E + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568 >gi|251790994|ref|YP_003005715.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya zeae Ech1591] gi|247539615|gb|ACT08236.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya zeae Ech1591] Length = 576 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 183/566 (32%), Positives = 280/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++P ++ R+ R V L S+R L+ D +L ++A + +A+ + +I+I Sbjct: 20 SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGIEQAVEVLRRALAENRRIVI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R DGYG +P ++ + +GA+LI+TV Sbjct: 76 VGDFDADGATSTALTVLALRSMGGYEVQYLVPNRFEDGYGLSPEVVAQAAVKGAELIVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A +GI V+V DHH A A++NPN D L GV F Sbjct: 136 DNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 YLMMALRASLRESGWFSERGLAEPNLAELLDLVALGTVADVVPLDANNRILVSQGLSRIR 255 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ +D + Sbjct: 256 AGKCRPGIRALLEVSNRDAAHLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 MLA LD LNQ+RR +E+ M +A + + + WH G+VG+LA+R Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALQLCEQLERSRETLPLGLAMYHPEWHQGVVGILASR 375 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLS 435 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F F + A V DG L +++ +ML AGP+G P Sbjct: 436 LVEDRFDEFRQRFADLVSEWLDAAQLEGVVWSDGELAPPELSLGTAEMLREAGPWGQAFP 495 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + S + + Sbjct: 496 EPLFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD----SSVREVE 550 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L VN +RG + QL + P+ Sbjct: 551 LAYKLDVNEFRGKRSVQLLIEHLWPL 576 >gi|149910169|ref|ZP_01898815.1| putative single-stranded-DNA-specific exonuclease RecJ [Moritella sp. PE36] gi|149806755|gb|EDM66719.1| putative single-stranded-DNA-specific exonuclease RecJ [Moritella sp. PE36] Length = 576 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 183/565 (32%), Positives = 288/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ ++ +R V D L ++ L+ P L A +V A+ +++I+I Sbjct: 20 VPALLRQIYASRGVKSDQE---LEKGVKNLLR-PNQLKGMTAACELLVSALVKNQRIIII 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL M N + +P+R GYG +P +++ GAQLI+TVD Sbjct: 76 GDFDADGATSTALSMLAFKMLGYRNIDFLVPNRFEFGYGLSPEIVDLAATNGAQLIMTVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A GI V+V DHH +E A A+VNPN+ +L GV F Sbjct: 136 NGISSIAGVAAAKALGIKVLVTDHHLPGNEIPDADAIVNPNQHGCTFPSKNLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR- 272 V++ + LR+ + +L LLD+VAL TV DVVPL NR V +GL R Sbjct: 196 VMLALRGALREQDWFAKQGITEPNLACLLDIVALGTVADVVPLDANNRILVHQGLQRIRA 255 Query: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KALIE N + + A +LG+ +GP +NA GR+ + ++G L+ +D Sbjct: 256 DKCRPGIKALIEIANRNQAQLCASDLGFALGPRLNAAGRLDDMSVGVATLLCEDLNNARR 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARL 390 A +LD LN+ R+ +ES+M ++A A + + D Q I + D WH G+VGL+A+R+ Sbjct: 316 FAGELDSLNEERKEIESSMQQEALAILKSVDFDAGQVPYGICLFQDDWHQGVVGLVASRI 375 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G+ GS RSI G + ++ G+++K GGHAMAAGL++ Sbjct: 376 KERFHRPVIAFADAGEGEIKGSARSIPGLHLRDVLELLDIRNPGMILKFGGHAMAAGLSL 435 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + F ++ T V DG L + +++ ++++ A P+G P Sbjct: 436 RLDCYDEFAKQFNALVQELLTEEQLTGVVLSDGELLSEQLSLPTAELIKEAAPWGQMFPE 495 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F KL+ R+V HL+M E Q + AIAF V + + +++ + Sbjct: 496 PIFDGI-FKLREQRLVGKKHLKMMLEPEQGGPLVDAIAFNVDLEVWPD----ASVQKIEL 550 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L VN +RG + Q V P+ Sbjct: 551 AYKLDVNEFRGKRSLQFMVEHLQPL 575 >gi|163942159|ref|YP_001647043.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus weihenstephanensis KBAB4] gi|163864356|gb|ABY45415.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus weihenstephanensis KBAB4] Length = 773 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 284/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + + R ++ + DFLN + DP +L Sbjct: 7 RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLN-TADQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ A P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G + +N W K+ QL V D + F + Sbjct: 529 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|23099481|ref|NP_692947.1| single-strand DNA-specific exonuclease [Oceanobacillus iheyensis HTE831] gi|22777710|dbj|BAC13982.1| single-strand DNA-specific exonuclease [Oceanobacillus iheyensis HTE831] Length = 771 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 164/591 (27%), Positives = 285/591 (48%), Gaps = 33/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S +W + + ++ + + ++ ++ + R ++ + + FL+P I L P Sbjct: 4 SKMKWRY---NQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHH-P 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA +RI +AI N EKI++FGDYD DG +S A+M++ L+ + YIP+R Sbjct: 60 FLLKDMEKAVQRIHKAIQNEEKILVFGDYDADGVSSTAVMLKALTELGATCDFYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +G ++IITVD G TS A G+D+I+ DHH+ ++ ++ Sbjct: 120 EGYGPNEAAFRNASEQGYKVIITVDTGITSVHEANIANELGMDLIITDHHEPQTNIPESF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P + L GV F + P L A+ T+ D Sbjct: 180 AIIHPKCSPE-YPFNELAGVGVAFKFAEALL------GYFPS-----QFLSYTAIGTIAD 227 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +VPL NR GL R + GLKALI+ I + +++G+ IGP +NA GR+ Sbjct: 228 LVPLFDENRVLASYGLKELRATTDVGLKALIQVCQIED-LDEQSIGFSIGPRLNAVGRLQ 286 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L LL+++D + +A +++ +N R+ + ++ +A+ V ++ + +IV Sbjct: 287 DADLAVELLLTEDMEAALEIANEINKINDERKKVVQRIVSEADQIVNSK----PERRIIV 342 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V + W+ G++G++A+ L K+ RP+ + + E+G GS RSI FD+ Sbjct: 343 VSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDL--FEGCMRMR 400 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + GGH+ AAG+T+ N +L +N + +I G LN +NI Sbjct: 401 DLFTHFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIE 460 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 LI + P+G NP PVF I+ + HL+M F ++S + AI F Sbjct: 461 LIKDISKLAPFGMKNPKPVFQIKEIP-SDIKRIGSKKNHLKMQFR-KNSTRMDAIGFGWG 518 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + + G L +N W G++ QL + D E F + Sbjct: 519 DA----YNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMKIDEWQLFDYR 565 >gi|167636494|ref|ZP_02394791.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0442] gi|170688663|ref|ZP_02879868.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0465] gi|254684164|ref|ZP_05148024.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. CNEVA-9066] gi|254741549|ref|ZP_05199236.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Kruger B] gi|167528087|gb|EDR90884.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0442] gi|170667349|gb|EDT18107.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0465] Length = 779 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYVKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573 >gi|255533564|ref|YP_003093936.1| single-stranded-DNA-specific exonuclease RecJ [Pedobacter heparinus DSM 2366] gi|255346548|gb|ACU05874.1| single-stranded-DNA-specific exonuclease RecJ [Pedobacter heparinus DSM 2366] Length = 567 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 166/577 (28%), Positives = 273/577 (47%), Gaps = 16/577 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 RWV L AL + Q+ I +A++LV R +S + A+ + P + L DP + Sbjct: 3 KRWVQALQGNKETTAL-LAQQLNIDSSLAQILVQRGISSFEEARQYFRPDMGRLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA RI +AI + EKI+++GDYDVDG SVAL F S + YIPDR +G Sbjct: 61 MKDMDKAIERIDKAINSREKILVYGDYDVDGTTSVALAFSFFSQFTDQIGYYIPDRHKEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + ++ G LII +DCG S D + YA + ID I+ DHH A A+ Sbjct: 121 YGISTAGIDYANANGISLIIALDCGIKSTDKIAYANSLNIDFIICDHHLPGEVLPAAVAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L G+ F + R LDLV ++ D+V Sbjct: 181 LDPKRKDCPYPFKELAGCGIGFKLAQAYCLQHRL-----PQEQYERYLDLVMVSIAADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ NR GL+ GLKAL++ + T ++ + + P INA GR+ + Sbjct: 236 PIEDENRILAYHGLIKLNSNPCIGLKALMDISGKNKDYTLTDVVFTLAPRINAAGRMDHA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N ++L+ + + ++ +++ N R+ + M +A A + +C+ + VV Sbjct: 296 NQAVKMLLCTEDNLAQEQSLLINLQNTERKTSDQNMTAEALALI-AECEILINKKTTVVY 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + W+ G++G++A+RL EK+ RP+ ++ + +G GS RS+ GFD+ + + E +L Sbjct: 355 HENWNKGVIGIVASRLTEKYYRPTVVLT-KSNGLLTGSARSVAGFDLYEALLGC--EDLL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 V+ GGH AAGLT++ + G + F+ + + P ID + ++ Sbjct: 412 VQFGGHKFAAGLTIKAEDIGFFTERFENIVAATITEDLLCPEISIDNEIRLRQIDGKFQR 471 Query: 495 MLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 ++ P+G N PVF L VV HL++ + Q+S + IAF + Sbjct: 472 IIAQMAPFGPHNMAPVFVSHEVFLASKPYVVGTKHLKLAIKQQNSSIFECIAFGMAEEY- 530 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + V + N W+ KR QL + + Sbjct: 531 --EQLLQPNQPFSVCYTIEENIWKAQKRLQLNIKEIK 565 >gi|269964521|ref|ZP_06178761.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus 40B] gi|269830758|gb|EEZ84977.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus 40B] Length = 579 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 177/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L ++A + QAI ++I++ Sbjct: 18 SIPPILKRIYINRGITD---LSQLETSARGLHSY-QKLGGIEQAVDLLFQAIKEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCSFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKHNWFAEQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFSLGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L + + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGNELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + V DG L ++ + + L S GP+G Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|172035400|ref|YP_001801901.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. ATCC 51142] gi|171696854|gb|ACB49835.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. ATCC 51142] Length = 654 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 287/583 (49%), Gaps = 20/583 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 + RW + + + + ++A+V++NR + A+ ++NP + L PD Sbjct: 3 LPDQRWYIASPNPD--QVKMLVAETGLSPLLAQVILNRGIDSPNLAQVYINPEVETL-PD 59 Query: 72 P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P D + + +AI EKI I GDYD DG S +L++R L+H +A IP R Sbjct: 60 PLDEFPDLLSSIELLKEAIEIGEKIAICGDYDADGMTSTSLLLRALTHLGGDAYYEIPSR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + DGYG N ++EKF EG +++TVD G +Y+ ++ A G+ VI+ DHH + + P Sbjct: 120 MKDGYGINERIVEKFAEEGVGVVLTVDNGIAAYEPIKRAIELGLTVIITDHHDLPEKLPP 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP L S L GV +++ V + + + SLL+L L T+ Sbjct: 180 ADAILNPKLLSIHSPYRGLAGVGVAYILAVTLAEQFNKTE-----EIIDSLLELFTLGTI 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307 D+ PL+G+NR ++ KGL G++AL++ + +++G+ +GP INA Sbjct: 235 ADLAPLVGVNRRWLKKGLKQLPNSQLAGIQALMQVAGVSEEQKQLKPDDIGFKLGPRINA 294 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ LL +DD AM+ + +N R+ + + ++A + T + ++ Sbjct: 295 VGRIGDPQTAIELLTTDDPGIALERAMQCEQINGKRKGLCEEIEKEAIHLIKTTPINYKK 354 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+VV +WH G++G++A+RL E++G P F ++EED G + + + Sbjct: 355 DRVLVVINHKWHHGVIGIVASRLVERYGVPVFIGTYEEDDPSKIRGSARGIEEFNIFEAL 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +L K GGH A G ++ N + +FAH ++ P+ KIDG N Sbjct: 415 VYCDDLLGKYGGHKAAGGFGLKSNNLIAFKERLSQFAHQLLEPHHIKPLVKIDGEANFKQ 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N L ++S P+G N PVF PN K+ R V HL++ +D + ++AIA+R Sbjct: 475 LNAQLYQHIDSLQPWGIENAFPVFWTPNVKILEQRTVGKNHLKLVLGQEDGQEMKAIAWR 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 KR+ + L NYW G+ +L ++ Sbjct: 535 FGSYF-------PLPKRLDIAYKLTENYWNGTVNIELEIVGVR 570 >gi|167032095|ref|YP_001667326.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida GB-1] gi|166858583|gb|ABY96990.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida GB-1] Length = 569 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 175/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L + +V+A+ ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVEALDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH + A A++NPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLKVLVTDHHLPGQQLPDADAIINPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D+ + + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + + T DG L ++ L L AGP+G P P+ Sbjct: 432 GNFQAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF V E + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 547 KLDVNEFRGNESVQLMIAHMEP 568 >gi|330975449|gb|EGH75515.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 571 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 286/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFQSNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|330896007|gb|EGH28230.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936896|gb|EGH41027.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. pisi str. 1704B] Length = 571 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 286/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|160883196|ref|ZP_02064199.1| hypothetical protein BACOVA_01165 [Bacteroides ovatus ATCC 8483] gi|156111421|gb|EDO13166.1| hypothetical protein BACOVA_01165 [Bacteroides ovatus ATCC 8483] Length = 588 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 276/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 20 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 78 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 79 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 138 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 139 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 198 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 199 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 253 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 254 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 313 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 314 GKEAVDLLTEKDFSIALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 372 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 373 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 429 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V +ID ++ ++ Sbjct: 430 LENFGGHTYAAGLSMKVENVDAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 489 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 490 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 549 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 550 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 588 >gi|138896148|ref|YP_001126601.1| single-strand DNA-specific exonuclease [Geobacillus thermodenitrificans NG80-2] gi|134267661|gb|ABO67856.1| Single-strand DNA-specific exonuclease [Geobacillus thermodenitrificans NG80-2] Length = 785 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + ++ I ++A++LV R V + A FL+P + DP +L Sbjct: 7 RWEVDCPDE--QTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDP-LGQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A RR+ +AI E ++++GDYD DG S ++M+ L + YIP+R +GY Sbjct: 64 DGMERAVRRLERAINTGELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G +I+TVD G + D + A G+DVIV DHH+ AYA++ Sbjct: 124 GPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEWGLDVIVTDHHEPGPVLPEAYAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLDLVA+ T+ D+VP Sbjct: 184 HPKKPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314 L+G NR +GL R GL+AL + I + + + +G+ I P +NA GR+G + Sbjct: 233 LVGENRLLAAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL++DD E LA ++D LN+ R+ + + M E+A V Q + V+VV Sbjct: 293 DPAVALLMTDDEGEAARLAQEMDELNRERQQLVAQMAEEAAEMVRRQFPPEEHR-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+PG+VG++A++L E+F RP+ +S E G GS RSI GFD+ S + I Sbjct: 352 GEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDL--FASLSQCRDI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A + TP ID + + ++ Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 E P+G NP P+ ++++R V H++ F SQ+ + AI F + Sbjct: 470 RSFERLAPFGVSNPRPLLLIEEVAVETMRRVGANGAHMKAVF-SQNGAAIDAIGFGLG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + G + G L VN W G + QL + D + F + Sbjct: 527 --PLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLCDVAVSSCQVFDVR 573 >gi|299148228|ref|ZP_07041290.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_1_23] gi|298512989|gb|EFI36876.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 3_1_23] Length = 572 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 276/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V +ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVNAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|91226784|ref|ZP_01261437.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus 12G01] gi|91188915|gb|EAS75199.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio alginolyticus 12G01] Length = 579 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 176/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L ++A + QAI ++I++ Sbjct: 18 SIPPILKRIYINRGITD---LSQLETSARGLHSY-QKLGGIEQAVDLLFQAIKEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCSFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKHNWFAEQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L + + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEGNELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + V DG L ++ + + L S GP+G Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|24372539|ref|NP_716581.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella oneidensis MR-1] gi|24346551|gb|AAN54026.1|AE015540_6 single-stranded-DNA-specific exonuclease RecJ [Shewanella oneidensis MR-1] Length = 574 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 271/565 (47%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + L +R P + D AA+ I A+ + I+I Sbjct: 19 HLPPLLRQLYARRGVLPSECELVLKGLLR-----PDTMKGLDLAAKLIADAMQLDKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L + IP+R GYG +P ++ ++ AQL+ITV Sbjct: 74 VGDFDADGATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAQLLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH E A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNRILVEAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ Q I + + WH G++G+LA+R Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G++ K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F + + T DG L + + + + +L +AGP+G Sbjct: 434 LKSGGFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+Q L AIAF V + +Q Sbjct: 494 EPLFDGY-FKIIQQRIVGDRHLKLVLETQCGTVMLDAIAFNVALHTWPDATIQHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG+ QL V P Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573 >gi|261405419|ref|YP_003241660.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. Y412MC10] gi|261281882|gb|ACX63853.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. Y412MC10] Length = 800 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 168/581 (28%), Positives = 291/581 (50%), Gaps = 26/581 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W I + ++P IVA ++ +R + S + ++FL + L DP Sbjct: 4 SKYEWRIREAASTI--TERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTF-ELTHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ +A RI +A+ + E I+I+GDYD DG +S +LM+ + + + ++YIP R Sbjct: 61 YLMQGMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRYLGASYDIYIPHRSN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ +G L+ITVD G ++ + + YA + GIDVIV DHH+ AY Sbjct: 121 EGYGLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPEVLPEAY 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 AL+NP L GV + + + + L +V++ T+ D Sbjct: 181 ALINPKIPTCPYPFKGLAGVGVAYKLAQAL-----------VGDPPEEWLQIVSIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 ++PL G NR V G+ RR G+++L+E I +TA N+ + + P INA GR+ Sbjct: 230 LMPLTGENRVLVKHGIESMRRTRYEGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL ++ +E E LA +LD LN++R+ + ++++A V + + VI Sbjct: 290 DHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWRGQEIPPVI 349 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G+ W+ G+VG++A+++ E+F RP + E G GS RSI GFDI + Sbjct: 350 VLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLSC-- 407 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + ++ GGH AAG+++ R ++A + + A V + D + S V++ Sbjct: 408 KDVMDHFGGHPSAAGMSLHRDRLAAFEQGLHRYAEDALEAEHLIAVCEADLEASLSEVSV 467 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 +++ +E GP+G N P F + ++ +R + HL++ + + E + AI+F Sbjct: 468 PILEQMEQLGPFGMANAVPKIVFRDVVIKDVRKIGKEGKHLKLRLQQK-REVIDAISFGW 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + L G + V G L VN W GS++ QL + D Sbjct: 527 G--HLADIL--PVGSVVDVLGELSVNEWNGSRKVQLMIQDI 563 >gi|303236583|ref|ZP_07323165.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella disiens FB035-09AN] gi|302483236|gb|EFL46249.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella disiens FB035-09AN] Length = 574 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 167/586 (28%), Positives = 276/586 (47%), Gaps = 22/586 (3%) Query: 17 RWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W E N A + +K I I+A +L+ R + + AK F P + L+ +P + Sbjct: 4 KWNYTPPTPEQTNAAKELGEKLGISPILATLLLRRGIKTESAAKRFFRPQLSDLI-NPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ A+ E+IM++GDYDVDG +VAL+ FL N YIPDR +G Sbjct: 63 MQDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVFNFLRQFYSNIEYYIPDRYDEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ + G +LII +DCG + + + YA QGID I+ DHH + PA A+ Sbjct: 123 YGVSKKSIDFAKDNGVKLIIILDCGIKAVEEISYAKEQGIDFIICDHHVPDNNLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R DD LC GV F + +N L+ LLD A++ D+V Sbjct: 183 LNPKRSDDSYPFKDLCGCGVGFKFMQAFA-----NNNNIAFSRLIPLLDFCAVSIAADLV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + + GL+A++E ++ ++ + IGP INA GR+ Sbjct: 238 PVVGENRILAFHGLKQLNQNPSVGLQAIVEICGLTGRELSMSDIIFKIGPRINASGRMEN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL+ D + A +D N R+ ++ M E+A +++ + + + + IV+ Sbjct: 298 GKESVDLLVERDLATALLEARNIDKYNDKRKDVDRQMTEEA-NQIVERLESQKHQNSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W G++G++A+RL E + RP+ I+ ED GS RS GFD+ + + Sbjct: 357 YDEHWKKGVIGIVASRLTEIYYRPTIVIT-REDDLATGSARSAVGFDLYSAIENC--SDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH AAGLT++ N D FQK+ + ID V++ + L Sbjct: 414 LLNFGGHTYAAGLTLKWENVKEFRDRFQKYVDEHIEPHQKEATLDIDTVIDFKDITKKLH 473 Query: 494 DMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKRFAPFGPKNEKPLFCTKDVFDFGTSKVVGRAQEHIKLELVDSKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N ++ QL++ P E Sbjct: 534 ES----ARYIKSKRSFDIVYTIEDNVFKKGSS-QLQIEGIRPSESE 574 >gi|225012395|ref|ZP_03702831.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria bacterium MS024-2A] gi|225003372|gb|EEG41346.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria bacterium MS024-2A] Length = 565 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 163/577 (28%), Positives = 273/577 (47%), Gaps = 22/577 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W + N ++ + ++A++L R ++ + AK+F P L DP ++ Sbjct: 3 WYTPPSAPE-NTVEHLSGALGVSPVIAQLLAQRGITSYEEAKNFFRPDWSQLH-DPYLMQ 60 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D A RI+QAI E++M++GDYDVDG SVAL+ FL N Y+PDR +GYG Sbjct: 61 DMTVAVNRIIQAIERHERVMVYGDYDVDGTTSVALVYSFLKDKIENLTPYVPDRYKEGYG 120 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + ++ EG LII +DCG + + YA + G+D ++ DHH A A+++ Sbjct: 121 ISIAGIDHAKEEGISLIIALDCGIKANAQIDYANDLGVDFVICDHHLPSENLPKAIAVLD 180 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R D LC G+ F ++ + + + +L LDLVA A D+VP+ Sbjct: 181 PKRGDCAYPFKELCGCGIGFKLIQAVQQRMEL-----PQKELFCYLDLVATAIAADIVPI 235 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 IG NR G+ + GL+ ++ + +P++ +L ++I P INA GR+ Sbjct: 236 IGENRILTFLGIEQLNQSPRVGLQFFLKSL--KNPVSVTDLVFVIAPRINAAGRMDHGLN 293 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL + D + +A ++ N RR + + ++A +++ ++ Q++ VV Sbjct: 294 AVELLAASDVEVALPIARSIEFYNSERRATDERITKEALQQII--LNEQQESFSTVVFHS 351 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++G++A+RL E + RP+ ++ E G GS RS+ GFD+ K + E +++ Sbjct: 352 SWHKGVIGIVASRLIETYYRPTVVLTESE-GVLSGSVRSVRGFDVYKALESCAEF--MIQ 408 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH AAGLT++ F+ + + + TP D VL + ++ L+ +L Sbjct: 409 FGGHKYAAGLTLKPEQLEGFKKGFEAYVRSTILKEQQTPSLIYDAVLKLNELSPKLLRIL 468 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPL 553 GP+G N PVF + K R+V HL++ +Q I F + Sbjct: 469 NQMGPFGPKNMRPVFVTHHCKDTGGSRLVGKDQTHLKLEIRDSSGIQIQGIGFGMG---- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + V L N + G QL+V D Sbjct: 525 ANLITIKNQLPFSVLYTLEENEYNGIVSLQLKVKDLK 561 >gi|126660250|ref|ZP_01731366.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. CCY0110] gi|126618489|gb|EAZ89242.1| single-stranded-DNA-specific exonuclease [Cyanothece sp. CCY0110] Length = 654 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 290/583 (49%), Gaps = 20/583 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 + RW + + + + ++A+V++NR + A+ ++NP++ L PD Sbjct: 3 LPDQRWYIASPNPD--KVKMLVAETGLSPLLAQVILNRGIDSPNLAQVYINPNVETL-PD 59 Query: 72 P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P D + + + +AI EKI I GDYD DG S +L++R L+H +A IP R Sbjct: 60 PLDEFPDLFPSIKLLKEAINIGEKIAICGDYDADGMTSTSLLLRALTHLGGDAYYEIPSR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + DGYG N ++EKF EG +I+TVD G +Y+ ++ A G+ VI+ DHH + + P Sbjct: 120 MKDGYGINERIVEKFAEEGVGVILTVDNGIAAYEPIKRAVELGLTVIITDHHDLPEKLPP 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP L S L GV +++ + + + + + SLL+L L T+ Sbjct: 180 ADAILNPKLLSIHSPYRGLAGVGVAYILAITLAKQFNKTE-----EIIDSLLELFTLGTI 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307 D+ PL+G+NR ++ KGL G++AL++ + +++G+ +GP INA Sbjct: 235 ADLAPLVGVNRRWLKKGLKQLPNSQLAGIQALMQVGGVSEEQKQLKPDDIGFKLGPRINA 294 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ LL +DD AM+ + +N R+ + + ++A + T + +Q Sbjct: 295 VGRIGDPQTAIELLTTDDPGIALERAMQCEQINGKRKGLCEEIEKEAIHLIKTTPINYKQ 354 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+VV +WH G++G++A+RL E++G P F ++EED G + + + Sbjct: 355 DRVLVVIHHKWHHGVIGIVASRLVERYGVPVFIGTYEEDDPSKIRGSARGIEEFNIFEAL 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +L K GGH A G ++ N + KFAH ++ P+ KIDG + + Sbjct: 415 VYCDDLLGKYGGHKAAGGFGLKSENLIAFKERLSKFAHQLLEPHHIKPLVKIDGEADFNQ 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N L ++S P+G N PVF PN K+ R V HL++ D + ++AIA+R Sbjct: 475 LNAHLYQHIDSLQPWGIQNAFPVFWTPNVKILEQRTVGKNHLKLVLGQDDGQEMKAIAWR 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 KR+ + L N+W G+ +L ++ Sbjct: 535 FGSYF-------PLPKRLDIAYKLTENHWNGNVNIELEIIGVR 570 >gi|238763214|ref|ZP_04624179.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia kristensenii ATCC 33638] gi|238698487|gb|EEP91239.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia kristensenii ATCC 33638] Length = 577 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGNNVDYLVPNRFDDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVELAHAMGIQVLVTDHHLPGETLPAAEAIINPNLTGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG L + +++ ++L GP+G P Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L AIAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDAIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576 >gi|302185539|ref|ZP_07262212.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. syringae 642] Length = 571 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 286/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF D F + + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFADAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|213969070|ref|ZP_03397209.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato T1] gi|301384035|ref|ZP_07232453.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato Max13] gi|302058741|ref|ZP_07250282.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato K40] gi|213926068|gb|EEB59624.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato T1] Length = 569 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 179/562 (31%), Positives = 282/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTRAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQL-KELPLESMPFGLCLFDAEWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L +AGP+G P P+ Sbjct: 432 DNFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVRLDGIAFSVDR----DIWPNPNIRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568 >gi|167640714|ref|ZP_02398974.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0193] gi|177653975|ref|ZP_02936016.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0174] gi|254736511|ref|ZP_05194217.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. Western North America USA6153] gi|167511286|gb|EDR86672.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0193] gi|172081030|gb|EDT66108.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus anthracis str. A0174] Length = 779 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + +YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEIYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TLAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVKDIAVEAWQLFDWR 573 >gi|153807332|ref|ZP_01960000.1| hypothetical protein BACCAC_01610 [Bacteroides caccae ATCC 43185] gi|149129694|gb|EDM20906.1| hypothetical protein BACCAC_01610 [Bacteroides caccae ATCC 43185] Length = 572 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 163/584 (27%), Positives = 272/584 (46%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYQPITPEQAETSQTLAQELGISPILGQLLVQRGITKAVDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MNDMDIAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 183 LNAKRPDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAFHGLKQLNSNPSVGMKAIIDVCGLSEREITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + + IV+ Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLAERRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ F + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVEAFTKRFEDFVSQHILPEQTSAVIDIDAEIDFRDITPRFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 SDLKKFNPFGPDNMKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|117621046|ref|YP_857761.1| single-stranded-DNA-specific exonuclease RecJ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562453|gb|ABK39401.1| single-stranded-DNA-specific exonuclease RecJ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 576 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 280/564 (49%), Gaps = 19/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ ++ +R V L S L+P P L +A + +A+ ++I+I Sbjct: 20 LHPLLRQIFASRGVEDPAL---LERSASQLLP-PQRLFGMAQAVPLLAEALTAQKRILIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + + +P+R GYG P ++E + GA+ +ITVD Sbjct: 76 GDFDCDGATSSALCVLALRAMGGRHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A G+ V+V DHH E A A+VNPN+ L GV F Sbjct: 136 NGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGCDFPSKSLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LRQ ++ LDLVAL TV DVV L G NR V +GL R Sbjct: 196 LMAALNTQLRQSGWYERQGLRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRA 255 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL++ + A +LG+ +GP +NA GR+ + +LG L+SDD Sbjct: 256 GRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSLGVACLLSDDLNLARQ 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA ++D LNQ R+ +E M ++A A + + D + S IV+ + WH G+VGL+A+++ Sbjct: 316 LASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRNEWHQGVVGLVASKV 375 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEK+ RP A + + + GSGRSI G + + G++ K GGHAMAAGLT+ Sbjct: 376 KEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTL 435 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + N F+ +V + T V DG L +++ L +++ ++GP+G P Sbjct: 436 PKANIEAFGRAFEAVIGELVTPELLTGVLLTDGELLPDELSLELAELIRASGPWGQAFPE 495 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 P+F L R+V HL+M + + AIAF V + + KR+ + Sbjct: 496 PLFDGEFV-LVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLQRWPD----ASVKRVRLV 550 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN WRG++ QL V Sbjct: 551 YRLDVNEWRGNRNVQLLVEHLEAA 574 >gi|300718201|ref|YP_003743004.1| Single-stranded-DNA-specific exonuclease [Erwinia billingiae Eb661] gi|299064037|emb|CAX61157.1| Single-stranded-DNA-specific exonuclease [Erwinia billingiae Eb661] Length = 572 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 193/561 (34%), Positives = 287/561 (51%), Gaps = 17/561 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ ++R V + A+ L + L P L+ ++AA + +A+ ++ IMI Sbjct: 22 LHPLLRRLYLHRGV-LQAAE--LERGAKNLHP-FHSLSGIERAAEILQKALADNLCIMIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TVD Sbjct: 78 GDFDADGATSTALTVLALRSMGGRNIKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V++ DHH A A+VNPN D L GV F Sbjct: 138 NGISSHAGVDLAHEKGISVVITDHHLPGETLPAAEAIVNPNLEDCAFPSRSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 +++ + LR V + +L LLDLVAL TV DVVPL NR V +GL R + Sbjct: 198 LMLALRARLRDSG-VEVLPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCR 256 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 G+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+S+D + MLA + Sbjct: 257 AGIKALLEIANRDPRQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIAQARMLASE 316 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 LD LNQ R+ +E M +A A + D I + WH G+VG+LA+RLKE+F Sbjct: 317 LDALNQTRKEIEQGMQTEALALCDALESKDEALPLGIAMYHPEWHQGVVGILASRLKERF 376 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVN 452 RP A + DG GSGRSI G + + G+++K GGHAMAAGL++E N Sbjct: 377 HRPVIAFAPSGDGTLKGSGRSIAGLHMRDALERLDTLHPGLIIKFGGHAMAAGLSLEEAN 436 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 F R F + A V DG L A + + ++L AGP+G P P F Sbjct: 437 FDRFRQHFGDLVGEWLDAEALQGVVWSDGELMAQELTLTTAELLREAGPWGQAFPEPQFD 496 Query: 513 FPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 KL R+V HL++ E L IAF + T + +++ + L Sbjct: 497 GK-FKLIQQRLVGERHLKVMIEPLGGGPLLDGIAFNIDTTQWPD----PSVRQVELAYKL 551 Query: 572 CVNYWRGSKRCQLRVLDASPV 592 +N +RG++ QL + P+ Sbjct: 552 DINEFRGNRSVQLIIDHLWPL 572 >gi|229169152|ref|ZP_04296867.1| Exonuclease RecJ [Bacillus cereus AH621] gi|228614380|gb|EEK71490.1| Exonuclease RecJ [Bacillus cereus AH621] Length = 773 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + + R ++ + DFLN + DP +L Sbjct: 7 RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLN-TADQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ A P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDADLESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFGTY 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G + +N W K+ QL V D + F + Sbjct: 529 ----AKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|308270359|emb|CBX26971.1| hypothetical protein N47_A10000 [uncultured Desulfobacterium sp.] Length = 570 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 185/580 (31%), Positives = 286/580 (49%), Gaps = 20/580 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W Q I++ ++A +LVNR + S + A FLN SI L P + Sbjct: 4 KWHI--HQPDKKLVDKISKAIKCSPVIASILVNRGIFSAEEAHAFLNISIDNLR-SPFSI 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + AA RI AI EKI+IFGDYD DG S AL+M F H + + YIPDRI +GY Sbjct: 61 KDMEIAANRIYDAILRREKILIFGDYDADGVTSTALLMEFFRHTKADVSYYIPDRIKEGY 120 Query: 136 GPNPSLM-EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G + E I LIITVDCGS+S +A+ A + ID+I+ DHH + + A A+ Sbjct: 121 GLQEKHIAEIAIPGNIDLIITVDCGSSSNEAVAAANDADIDIIITDHHILPEKLPEALAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCD 252 ++P R D SG HL GV F +++ + + LR + +L +L DL+AL TV D Sbjct: 181 ISPKRPDCNSGLSHLAGVGVAFYLVIYLRKYLRDMHFWDRYPEPNLKNLCDLIALGTVAD 240 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +VPL+ NR + GL + G+ AL++ N I +E++ + + P INA GRI Sbjct: 241 MVPLLEENRVFTRIGLDLINSGSRIGISALLKAGNYRDTIDSEDIAFRLAPRINAMGRID 300 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL++ + + +A +++ +N R+ +E + ++ + DI + IV Sbjct: 301 NAKEAVELLLTGNPYTADNIARQMNQMNTKRQTIEKKVFDEIIEYI-QNNPDILLSKSIV 359 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH GI+G++A+RL EKF RP +E GSGRS F++ + ++ Sbjct: 360 LSHHGWHEGILGIVASRLVEKFHRPVVLFVQKET-IAKGSGRSTPYFNLYEGLAAC--SD 416 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL GGH+MAAG+ ++ N F+ + P +D L ++ Sbjct: 417 ILEAFGGHSMAAGVKIKIDNLSLFKQEFENAVLKMSQPEDLFPDIYVDHELIFDDISTGF 476 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET---LQAIAFRVY 549 +D LES P+GAGNP P+F N + S +V H +M S + AI F + Sbjct: 477 LDELESLKPFGAGNPEPIFIARNINVISSDIVGENHRRMVLSSSSGKKDNYYNAIHFNID 536 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + + L N W G+K QL + + Sbjct: 537 KSLPEKTIYEQ------IAFRLRWNRWNGNKSIQLVIENI 570 >gi|29349347|ref|NP_812850.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides thetaiotaomicron VPI-5482] gi|298384880|ref|ZP_06994439.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 1_1_14] gi|29341255|gb|AAO79044.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides thetaiotaomicron VPI-5482] gi|298262024|gb|EFI04889.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 1_1_14] Length = 572 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 164/584 (28%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYQPITPEQAETSQTLAQELGISPILGQLLVQRGITKAGDAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYASETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + N L+ LLDLVA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFA-----INNGIEFHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + + IV+ Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLSERRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNIKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|107103239|ref|ZP_01367157.1| hypothetical protein PaerPA_01004308 [Pseudomonas aeruginosa PACS2] gi|116051722|ref|YP_789439.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa UCBPP-PA14] gi|296387767|ref|ZP_06877242.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PAb1] gi|313109131|ref|ZP_07795102.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa 39016] gi|115586943|gb|ABJ12958.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa UCBPP-PA14] gi|310881604|gb|EFQ40198.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa 39016] Length = 571 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 175/564 (31%), Positives = 279/564 (49%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++AR+ R V L+ + L+P L ++ +V A+ ++I+I Sbjct: 17 DLPPLLARLYAARGVRCAEE---LDKGLARLIP-FQRLKGIEEGVALLVDALEGGQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + ++ + L + +P+R GYG P ++ + + L++TV Sbjct: 73 VGDFDADGATASSVGVLALRMLGAAWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +Q A G+ V+V DHH E A A++NPN+ + GV+F Sbjct: 133 DNGISSVDGVQAAKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + LR+ + +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVMLALRARLRELDWFARRGLKEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+AL+E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRALLEVAGRPPVRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + Q + + WH G++G+LA+RL Sbjct: 313 DMAVQLDQLNQDRKAIEQGMQREALAQL-KELSLEQLPFGLCLFDADWHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + DG GS RSI GF I + A G++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + NFG F + DG L+ ++ L L AGP+G P Sbjct: 432 PQENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L R+V HL++ +S+ L IAF + + + Sbjct: 492 PMFHG-VFQLVQQRIVGERHLKLVLKSECGSLQLDGIAFNIDREQWP----NPTVRWAEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG + QL ++ +P Sbjct: 547 AYKLDVNEFRGQESVQLMIVHMAP 570 >gi|253570306|ref|ZP_04847715.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. 1_1_6] gi|251840687|gb|EES68769.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. 1_1_6] Length = 572 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 164/584 (28%), Positives = 276/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYQPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYASETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + N L+ LLDLVA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFA-----INNGIEFHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + + IV+ Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLSERRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V ID ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNIKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|15598920|ref|NP_252414.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PAO1] gi|218889999|ref|YP_002438863.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa LESB58] gi|254236635|ref|ZP_04929958.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa C3719] gi|254242416|ref|ZP_04935738.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa 2192] gi|9949891|gb|AAG07112.1|AE004791_9 single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PAO1] gi|126168566|gb|EAZ54077.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa C3719] gi|126195794|gb|EAZ59857.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa 2192] gi|218770222|emb|CAW25984.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa LESB58] Length = 571 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 175/564 (31%), Positives = 279/564 (49%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++AR+ R V L+ + L+P L ++ +V A+ ++I+I Sbjct: 17 DLPPLLARLYAARGVRCAEE---LDKGLARLIPY-QRLKGIEEGVALLVDALEGGQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + ++ + L + +P+R GYG P ++ + + L++TV Sbjct: 73 VGDFDADGATASSVGVLALRMLGAAWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +Q A G+ V+V DHH E A A++NPN+ + GV+F Sbjct: 133 DNGISSVDGVQAAKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + LR+ + +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVMLALRARLRELDWFARRGLKEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+AL+E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRALLEVAGRPPVRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + Q + + WH G++G+LA+RL Sbjct: 313 DMAVQLDQLNQDRKAIEQGMQREALAQL-KELSLEQLPFGLCLFDADWHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + DG GS RSI GF I + A G++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + NFG F + DG L+ ++ L L AGP+G P Sbjct: 432 PQENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L R+V HL++ +S+ L IAF + + + Sbjct: 492 PMFHG-VFQLVQQRIVGERHLKLVLKSECGSLQLDGIAFNIDREQWP----NPTVRWAEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG + QL ++ +P Sbjct: 547 AYKLDVNEFRGQESVQLMIVHMAP 570 >gi|119475793|ref|ZP_01616145.1| RecJ exonuclease [marine gamma proteobacterium HTCC2143] gi|119450420|gb|EAW31654.1| RecJ exonuclease [marine gamma proteobacterium HTCC2143] Length = 584 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 182/568 (32%), Positives = 277/568 (48%), Gaps = 22/568 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ +R VS D + L+ P L A RI QA+ + ++I++ Sbjct: 20 HLHPLLQRIYGSRGVSSDAQVK---TDLSSLLK-PDSLKGLPTAVDRIHQALISHQRILV 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + +P+R GYG P ++E LIITV Sbjct: 76 VGDFDADGATSSALAVMALRSMGATFVDFLVPNRFDYGYGLTPEIVEVAKQFSPDLIITV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A GIDV+V DHH SE A A+VNPN+ +L GVVF Sbjct: 136 DNGISSISGVDEANRAGIDVVVTDHHLPGSELPKACAIVNPNQPGCEFTSKNLAGVGVVF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V+ + LR + ++ LDLVAL TV DVVPL NR V +GL R Sbjct: 196 YVMTALRSQLRSCHWFSDKGLDEPNMADYLDLVALGTVADVVPLDHNNRILVAQGLRRIR 255 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+K+L+ N S + + +LG+ +GP +NA GR+ + +LG + L+++D Sbjct: 256 AGRSRPGIKSLLNIANRSEHRLVSSDLGFALGPRLNAVGRLDDMSLGIQCLMTNDENLAS 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +A ++D LNQ+R+ +E +M ++A ++ D + WH G++G+LA+R Sbjct: 316 EIARQMDDLNQDRKSIEGSMQQEALNQLQNIDVDESSLPFGLCLYNGNWHQGVIGILASR 375 Query: 390 LKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGL 446 +KE++ RP A + +E+G GS RSI G I + A IL K GGHAMAAG+ Sbjct: 376 IKERYHRPVIAFADSDEEGMIKGSARSIPGLHIRDALDAVAASHPHILSKFGGHAMAAGM 435 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++E+ + F + + + DG L ++ +N+ L +L GP+G Sbjct: 436 SLEKQYYHEFETAFDREVRRQLTEDDLQAIIFSDGELASADINLDLAQLLRDGGPWGQHF 495 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET--LQAIAFRVYGTPLGEFLMQSRGKR 564 P P+F L R+V HL+M D + + AIAF V E + Sbjct: 496 PEPMFDGT-FTLLQQRIVGEKHLKMVLGVGDDKQQIIDAIAFNVDT----ECWPNPQATH 550 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + V L VN +RG + QL V S V Sbjct: 551 VAVAYKLDVNDFRGKQTVQLLVDHISVV 578 >gi|229062104|ref|ZP_04199429.1| Exonuclease RecJ [Bacillus cereus AH603] gi|228717256|gb|EEL68931.1| Exonuclease RecJ [Bacillus cereus AH603] Length = 773 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 177/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E + K + +V + + R ++ + DFLN + DP +L Sbjct: 7 RWKEKEYNE--ELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLN-TADQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A ++ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLNMNDVDELRRRLNEQADVVLTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + L+SIR + +HL+M + TL I F Sbjct: 470 EEMQKLAPFGVGNPKPRIAVKDADLESIRAIGSDGSHLKMALR-EGQATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G + +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVVGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|330950728|gb|EGH50988.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae Cit 7] Length = 571 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DVWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|269959608|ref|ZP_06173989.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio harveyi 1DA3] gi|269835666|gb|EEZ89744.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio harveyi 1DA3] Length = 579 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 277/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L DKA + QAI ++I++ Sbjct: 18 SIPAILKRIYINRGITD---VAQLETSARGLHSY-QQLGGIDKAVELLFQAIDEKKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKQNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L ++ + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + V DG L ++ + + L S GP+G Sbjct: 434 TIKEQDFERFSRLFDDVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|197285861|ref|YP_002151733.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis HI4320] gi|227356362|ref|ZP_03840750.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis ATCC 29906] gi|194683348|emb|CAR44055.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis HI4320] gi|227163472|gb|EEI48393.1| single-stranded-DNA-specific exonuclease [Proteus mirabilis ATCC 29906] Length = 577 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 185/584 (31%), Positives = 289/584 (49%), Gaps = 22/584 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + + +A A+ + ++ ++ ++ NR ++ + L S++ L+ L Sbjct: 4 IEPTLRRRVAKATALPE--SLDPLLRQIYANRGITSE---TQLERSLKGLLHY-QDLNGI 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137 D A +V+A+ +I+I GD+D DGA S AL ++ L + +IP+R DGYG Sbjct: 58 DVAISLLVEALKLQSRIVIVGDFDADGATSTALAIKALRQMGFQQVSYHIPNRFDDGYGL 117 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 +P ++ +G LIITVD G +S++ + A GI V+V DHH A A++NP Sbjct: 118 SPQVVHDVAKKGVDLIITVDNGISSFEGVDVAHEYGIRVLVTDHHLPGHSLPQADAIINP 177 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDV 253 N D L GV F ++ + L + ++ LDLVAL TV DV Sbjct: 178 NLADCAFLSKSLAGVGVTFYLMTALRAELEKQGWFTAQGLARPNMADYLDLVALGTVADV 237 Query: 254 VPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 VPL NR +V +GL R + G+KAL E + S + + +LG+ +GP +NA GR+ Sbjct: 238 VPLDENNRIFVYEGLRRIRAGRCCAGIKALTEVSRKTLSQLVSSDLGFALGPRLNAAGRL 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASV 370 + ++G LL+++D +A +LD LNQ RR +E+ M E+A + Sbjct: 298 DDMSVGVALLLTNDIGVAREIANELDGLNQTRREIEAGMQEEASTIFRQFITTQDDLPNG 357 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV- 429 + + +WH G+VG+LA+R+KEK RP A + DG GSGRSI G + + Sbjct: 358 LAIYHPQWHQGVVGILASRIKEKLHRPVIAFAPSGDGLLKGSGRSIHGVHLRDALERLNT 417 Query: 430 -EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 G++VK GGHAMAAGL++E F F +V A V DG L+ S + Sbjct: 418 LNPGLMVKFGGHAMAAGLSLEEDKFPLFQRHFSALMAELVSAEQLQGVILTDGELSDSQL 477 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFR 547 ++ + +ML AGP+G P P+F L R+V HL+M + +S + AIAF Sbjct: 478 SLPIAEMLREAGPWGQAFPEPLFDGK-FTLLQQRIVGSKHLKMMLQPINSHVMIDAIAFN 536 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 V + + K + + L VN +RG + QL V P Sbjct: 537 VDVNIWPD----NSIKTVELAYRLDVNEFRGQRNAQLLVEHIWP 576 >gi|196039251|ref|ZP_03106557.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus NVH0597-99] gi|228917045|ref|ZP_04080605.1| Exonuclease RecJ [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|196029878|gb|EDX68479.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus NVH0597-99] gi|228842652|gb|EEM87740.1| Exonuclease RecJ [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 779 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEEILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|238018953|ref|ZP_04599379.1| hypothetical protein VEIDISOL_00813 [Veillonella dispar ATCC 17748] gi|237864437|gb|EEP65727.1| hypothetical protein VEIDISOL_00813 [Veillonella dispar ATCC 17748] Length = 660 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 188/584 (32%), Positives = 290/584 (49%), Gaps = 24/584 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 I RW + + ++ + IVA+++VNR++ +D + FL S+ L+ DP Sbjct: 2 IKKKRWRISTSDKEQENI--LIRELGVNPIVAKLMVNRHIDVDEGRKFLQGSLSDLL-DP 58 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D A + + I N + I+I+GDYDVDG + +++ RFL + YIP+R Sbjct: 59 FALKDMDVAVSLVQETIENHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N +E I +G L+ITVDCG +SYD ++ ++ ID+I+ DHH A Sbjct: 119 EGYGLNFEALEHLIEQGTSLVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDLIPRAK 177 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N + D +L GV F + ++ L LD+VAL TV D Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKYGEWYLDDLDIVALGTVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR V GL N G+K LI+ IT+ ++G+ + P +NA GR+ Sbjct: 231 VVPLVGENRIIVKAGLEKMNSHPNLGIKKLIDVAGLHDRTITSGHIGFTLAPRLNAAGRV 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL++DD+ E +A +L+ N+ R+ +E + E A V Q V Sbjct: 291 THATRAVELLVTDDADMAEAIAEELNETNRERQELEWNIHELARIDVANQGHKA--DYVT 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV G+ WHPG++G++A+RL E+F +P+ IS + G G GS RSI+GF+I + E Sbjct: 349 VVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L++ GGHA AAG +++ L D + V PV ID L +++ Sbjct: 406 DVLLQFGGHAAAAGFSIDANRIDELRDRLTAYCKEHVTPEEYIPVVAIDAELPVDDIDVD 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +ID + + PYG N PVFA +Q I ++ H ++ E+ TL AIA+ Sbjct: 466 IIDRVSALEPYGMANSTPVFAVMEATVQDIMLMGQLKNHCKVILETSSG-TLDAIAWNRP 524 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F G + V L N W+G QL + P+ Sbjct: 525 DL----FKTIFVGTVVKVAFSLQKNEWQGMVSPQLMIQAIEPLT 564 >gi|294673310|ref|YP_003573926.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella ruminicola 23] gi|294471730|gb|ADE81119.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella ruminicola 23] Length = 573 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 168/585 (28%), Positives = 275/585 (47%), Gaps = 22/585 (3%) Query: 16 FRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W E A + +K + I+A +L+ R + + AK F P + L+ DP Sbjct: 3 FKWNYQPPTSEQQTAAKELGEKIGMSPILANLLIQRGIKTESAAKRFFRPMLNELI-DPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+IM++GDYDVDG +VAL+ +FL N YIPDR + Sbjct: 62 LMNDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTAVALVYKFLQQFYSNIEYYIPDRYEE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + + +G +LII +DCG + + + YA + GID I+ DHH E A A Sbjct: 122 GYGISKKGLHYAAEKGIKLIIVLDCGIKAIEEIAYAKSLGIDFIICDHHVPDDELPNAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R D LC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKREDSTYPFKDLCGCGVGFKFMQAFAK-----NNGIPFSRLIPLLDFCAVSIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VP++G NR GL + + GLKA+I+ IT ++ + IGP INA GR+ Sbjct: 237 VPIMGENRILAYHGLKQLNQSPSVGLKAIIDICGLTGREITMSDIVFKIGPRINASGRMQ 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D + A ++ N+ R+ ++ M E+A +++ + + + + IV Sbjct: 297 NGTEAVDLLVEKDLNKALAEANHINEYNEQRKDVDKQMTEEA-NQIVEKLESQKHHASIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ G GS RS+ G+D+ + Sbjct: 356 LYDENWKKGVIGIVASRLTELYYRPTVVLTKFN-GIATGSARSVAGYDVYDAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGH A GL+++ N FQK+ + T ID V++ V L Sbjct: 413 LLENFGGHTYAVGLSLKIENIPEFRSRFQKYVMEHIQPEQTEATLDIDAVIDFKDVTKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G NP P+F N + +VV H+++ + S L IAF Sbjct: 473 HNDLKKFAPHGPDNPKPLFCTRNVYDYGTSKVVGRQQEHIKLELVDSKSSNVLNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIVYTIEDNIYK-RTEVQLQIEDIQPSE 572 >gi|189463120|ref|ZP_03011905.1| hypothetical protein BACCOP_03831 [Bacteroides coprocola DSM 17136] gi|189430099|gb|EDU99083.1| hypothetical protein BACCOP_03831 [Bacteroides coprocola DSM 17136] Length = 572 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 169/585 (28%), Positives = 277/585 (47%), Gaps = 22/585 (3%) Query: 15 GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72 ++W E A A+ + I I+ R+L+ R ++ AK F P + L DP Sbjct: 2 NYKWNYQPPTLEQREAARALAKDIGISPILCRLLLERGITSTAEAKQFFRPQLNELH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D A R+ +A+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FLMKDMSIAVERLNKAMGRKERIMVYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G +LII +DCG + + + YA +GID I+ DHH PA Sbjct: 121 EGYGVSKKGVDYAAETGVKLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP R D HL GV F + N L LLDLVA++ D Sbjct: 181 AILNPKRFDSTYPYDHLSGCGVGFKFMQAFA-----INNGIEFHQLTPLLDLVAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 236 IVPIMGENRVLAYHGLRQLNSNPSIGLKAIIDVCGLSEREITMSDIVFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LLI D Q + +++ N+ R+ ++ +M E+A K++ + + + I Sbjct: 296 QNGKKAVDLLIEKDFQAALEKSNQINQFNETRKDLDKSMTEEA-NKIVDHLEKLSERRSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WH G++G++A+RL E + RP+ ++ + GS RS+ GFD+ K + Sbjct: 355 VIYNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-NLATGSARSVSGFDVYKAIEHC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+++ + + T+ ID L+ + Sbjct: 412 DLLENFGGHTYAAGLSMKIENVPEFTRRFEQYVTDHILPEQTSATIDIDAQLDFRDITPK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L+ P+G NP PVF+ N + +VV H+++ + + + IAF Sbjct: 472 FFFDLKKFNPFGPDNPKPVFSTLNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + ++ + N + QL++ D P Sbjct: 532 QS----SQARYIKTKQSFNICYTIEENTHK-RGEIQLQIEDIKPS 571 >gi|257866155|ref|ZP_05645808.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus EC30] gi|257872485|ref|ZP_05652138.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus EC10] gi|257800089|gb|EEV29141.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus EC30] gi|257806649|gb|EEV35471.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus EC10] Length = 758 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 177/584 (30%), Positives = 283/584 (48%), Gaps = 29/584 (4%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCD 79 E + Q+ IP+ + +L RN+ + + FL+ ++ L DP + D Sbjct: 3 PQESETTPVFKELIQERKIPERIGALLWQRNIRTAEALDAFLSTDLQYLH-DPFLFHDMA 61 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 KA RI +AI N E+I+I+GDYD DG S ++ L A Y+P+R DGYGPN Sbjct: 62 KAVERIHEAILNGERILIYGDYDADGITSTTVLKETLELLGAEAEYYLPNRFTDGYGPNL 121 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 ++ + I G QLIITVD G + ++A+ YA QG+DVIV DHH++ +E A+A+V+P Sbjct: 122 TVYQDKIAAGTQLIITVDNGVSGHEAIAYAQGQGVDVIVTDHHELPAELPEAFAIVHPRH 181 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 G L GV F V + + + LLDLVA+ T+ D+V L Sbjct: 182 PQGNYPFGDLAGVGVAFKVACALLEEVP-----------VELLDLVAIGTIADMVSLTDE 230 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGS 318 NR V GL + ++ GL L+ + ++G+ +GP +NA GR+ + N Sbjct: 231 NRLLVSNGLKMIQQSDRIGLNELLSVSGLKKQTVNETDIGFAVGPRLNAIGRLEDPNPAV 290 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 RLL + D +E LA LD +NQ R+ ++++A+ K+ V +V GD W Sbjct: 291 RLLTTFDEEEAVSLAQTLDTINQQRKTFVEEIMKEAQEKI------DPANHVHLVVGDHW 344 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H G++G++A R+ + G+P ++ +E+G GSGRSI ++ + + + G Sbjct: 345 HEGVLGIVAGRIMQSTGQPVIVLTKKENGLAKGSGRSIAALNL--FEMLSTMKDMFTSFG 402 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH A GL++ + L ++ L ID L + V+I+ I+ L+ Sbjct: 403 GHHAAVGLSIPIDHLDMLQAQMNRYVEENGIDLSQGIPLAIDEELPLTEVSISFIESLKV 462 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G NP P F F N Q+ R + HL++ + + L I F G+ Sbjct: 463 LAPFGTDNPLPKFLFSNLMTQNARQIGSENQHLKLVMSDESNTQLDVIGFG-----FGKD 517 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L+ R+ + G L +N W G+K+ QL + D + F + Sbjct: 518 LVAFENDRLSIVGQLSINEWNGNKKPQLMLDDFAVEGIQLFDYR 561 >gi|226328244|ref|ZP_03803762.1| hypothetical protein PROPEN_02137 [Proteus penneri ATCC 35198] gi|225202977|gb|EEG85331.1| hypothetical protein PROPEN_02137 [Proteus penneri ATCC 35198] Length = 577 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 180/581 (30%), Positives = 279/581 (48%), Gaps = 24/581 (4%) Query: 26 GINRALAITQKH----AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 I Q + ++ ++ NR ++ + L S++ L+ LT A Sbjct: 5 EPTLRRRIAQATQLPDNLDPLLRQIYANRGITSE---VQLERSLKGLLHY-QALTGIKTA 60 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPS 140 +++A+ +I+I GD+D DGA S AL ++ L + +IP+R DGYG +P Sbjct: 61 ISLLIEALKQQSRIVIVGDFDADGATSTALAIKALRQMGFKQVSYHIPNRFDDGYGLSPQ 120 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ +G LIITVD G +S++ ++ A GI V++ DHH A A++NPN Sbjct: 121 VVHDVAKKGVDLIITVDNGISSFEGVETAHEYGIRVLITDHHLPGQTLPAADAIINPNLS 180 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPL 256 D L GV F ++ + L + ++ LDLVAL TV DVVPL Sbjct: 181 DCPFLSKALAGVGVTFYLMTALRAELEKQGWFEQQNLPRPNMADFLDLVALGTVADVVPL 240 Query: 257 IGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 NR +V +GL R + G+KAL E S + + +LG+ +GP +NA GR+ + Sbjct: 241 DENNRIFVYEGLRRIRAGRCCVGIKALTEVSRKELSQLVSSDLGFSLGPRLNAAGRLDDM 300 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVV 373 ++G LL++D+ +A +LD LNQ RR +E+ M E+A + + + Sbjct: 301 SVGVALLLTDNIGSAREIANELDGLNQTRREIEAGMQEEASTIFRQFMGTQHDLPNGLAI 360 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EE 431 WH G+VG+LA+R+KEK RP A + DG GSGRSI G + + Sbjct: 361 YHPEWHQGVVGILASRIKEKLHRPVIAFAPSGDGLLKGSGRSISGVHLRDALERLNTLNP 420 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 G+++K GGHAMAAGL++E F F +V V DG L + +++ Sbjct: 421 GLMLKFGGHAMAAGLSLEEDKFPLFQRHFSSLMSELVSDEQLQGVILSDGELTENQLSLP 480 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYG 550 + +ML AGP+G P P+F L R+V HL+M + +S + AIAF V Sbjct: 481 IAEMLREAGPWGQAFPEPLFDGK-FTLLQQRIVGSKHLKMMLQPVNSHLMIDAIAFNVDI 539 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + K + + L VN +RG + QL V P Sbjct: 540 NIWPD----NSIKTVELAYRLDVNEFRGQRNAQLLVEHIWP 576 >gi|293372350|ref|ZP_06618735.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus SD CMC 3f] gi|292632792|gb|EFF51385.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus SD CMC 3f] Length = 572 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQTETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V +ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|237719156|ref|ZP_04549637.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. 2_2_4] gi|229451535|gb|EEO57326.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. 2_2_4] Length = 572 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V +ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVNAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 SDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|71735675|ref|YP_273626.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556228|gb|AAZ35439.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. phaseolicola 1448A] Length = 571 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 283/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISNFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|108761402|ref|YP_632854.1| single-stranded-DNA-specific exonuclease RecJ [Myxococcus xanthus DK 1622] gi|108465282|gb|ABF90467.1| single-stranded-DNA-specific exonuclease RecJ [Myxococcus xanthus DK 1622] Length = 573 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 187/587 (31%), Positives = 303/587 (51%), Gaps = 30/587 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW+ ++ + ++ + A+VL++R + + A FL+ + L PDP + Sbjct: 5 RWLL--PDVVEQEVASLAGELSLHPLAAKVLLHRGYRTPESASAFLSDRLADL-PDPFRM 61 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 A RI++AI + EK+ ++GDYDVDG S +L+ F+ YIP R+ +GY Sbjct: 62 KGMPGAVDRIIRAIRSREKVTLYGDYDVDGVCSTSLLYLFMKELGAPPATYIPHRLDEGY 121 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +E+ EG ++++T+DCG TS + A G+DV+V+DHH V PA A++ Sbjct: 122 GLNVGAVERIAAEGTRVLVTLDCGITSVAEITRAKELGLDVLVVDHHTVPPTLPPAVAVL 181 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253 NP++ LCAAGV F + I + LR + +L S++DLVALATV DV Sbjct: 182 NPHQPGCEYPTKALCAAGVAFNFCMGIRKRLRDEGFFATRKEPNLRSMMDLVALATVADV 241 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRI 311 VPL G NR V GL PG++AL E + +TA +G+ +GP INA GR+ Sbjct: 242 VPLTGANRILVTHGLQELSAGRRPGVRALKEVAGMDPDASVTAGQVGFRLGPRINAAGRL 301 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +++LG +LL S+ + LA LD N R+ +ES++L QA Q + ++ A + Sbjct: 302 HDASLGLQLLCSESPETARSLAAVLDRANAERQGIESSILTQAL----AQAESLKDARGL 357 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WHPG++G++A+R+ E+F RP+ + ++ G G GS RSIE F + +S E Sbjct: 358 VLYDEGWHPGVIGIVASRVVERFYRPTVMVGVKD-GVGKGSARSIEAFHLHDALSGCAE- 415 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L + GGH AAGLT++ + F+K A+ + P ++D V+N + ++ Sbjct: 416 -LLTRFGGHKHAAGLTIDAERLPAFREAFEKIAYQRLTPEDLIPRCRVDAVVNPNELDAH 474 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV------NLAHLQMTFESQDSETLQAIA 545 ++ L+ GP+G GNP PV ++ RV+ HL++ D+ L AI Sbjct: 475 AVESLQRLGPFGQGNPEPVLVLRR-QVARPRVLQPKSGTGSGHLKLAL--ADAPELDAIG 531 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + + + + +RG ++ LR+ D Sbjct: 532 FNMADR------ATLVDGPVDLAFQAGFDTFRGQRKLSLRLKDLRVA 572 >gi|66044546|ref|YP_234387.1| RecJ exonuclease [Pseudomonas syringae pv. syringae B728a] gi|63255253|gb|AAY36349.1| RecJ exonuclease [Pseudomonas syringae pv. syringae B728a] Length = 571 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF F + + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|86147404|ref|ZP_01065717.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. MED222] gi|85834832|gb|EAQ52977.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. MED222] Length = 578 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 177/568 (31%), Positives = 280/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ V+R + L + + L L D A + +AI ++I+I Sbjct: 18 HLPDLLKRIYVSRGIDSADQ---LETAAKGLHSY-QKLGGIDAAVELLFKAIQQQKRIII 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIELGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +++A +G+DV+V DHH SE A A+VNPN L GV F Sbjct: 134 DNGVSSIDGVRFAKEKGLDVLVTDHHLPGSELPIADAMVNPNLESCAFPSKSLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ + L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A + S + + WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G GS RSI G + + G+++K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F R F + + DG L ++ + L S GP+G P Sbjct: 434 IMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAETLRSGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K +H+ L +N +RG++ QL + Sbjct: 549 KTVHLAFKLDINEFRGNQSLQLMIDHIE 576 >gi|298480254|ref|ZP_06998452.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D22] gi|298273535|gb|EFI15098.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D22] Length = 572 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V +ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|159029095|emb|CAO90084.1| recJ [Microcystis aeruginosa PCC 7806] Length = 654 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 162/590 (27%), Positives = 289/590 (48%), Gaps = 21/590 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL- 73 RW + + ++ + ++A +L+NR + AK +++P ++P PL Sbjct: 8 QRWYIAATNP--EKIEGLAREMGLSSLLATILINRGIDTPEIAKTYIDPE-ADILPSPLG 64 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D +K+ +V+AI + +KI I GDYD DG S +L++R L H N IP R+ + Sbjct: 65 EFPDLEKSVNLLVKAIASGDKIAICGDYDADGMTSTSLLLRALRHLGARVNHAIPSRMKE 124 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N ++E+F G LI+TVD G ++++ + A G+ VI+ DHH + A A Sbjct: 125 GYGINQRIVEEFAESGVGLILTVDNGISAHEPIALAIELGLKVIITDHHDLPPILPNASA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP L S L GV +++ V + + + + SLL L L T+ D+ Sbjct: 185 ILNPKLLTPNSPYQGLAGVGVAYILAVTTAQKMGKLQGLT-----ESLLALFTLGTIADL 239 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGR 310 PLIG+NR ++ +GL + G+++L++ I + +++G+ +GP INA GR Sbjct: 240 APLIGVNRRWLKRGLRKLPKSQLVGIQSLMQIAGISEEQKQLQPDDIGFKLGPRINAIGR 299 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 IG+ + LL +DD+ AM+ + +N+ R+ + + E+A V Q+ V Sbjct: 300 IGDPQIVIELLTTDDAGIALERAMQCEQINRTRQELCEKIEEEAIKLVEETPILWQKDRV 359 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +V+ WH G++G++A+RL E++G P F ++EE+ G + + + Sbjct: 360 LVLVEKDWHHGVIGIVASRLVERYGVPVFIGTYEEEDASKIRGSARGIEEFHVFEALQFC 419 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +L K GGH MA G ++ N +F+H I+ P+ KID +++ + + Sbjct: 420 QDLLGKFGGHKMAGGFSLPTANLLAFKQRLSQFSHKILQIEQLKPLIKIDTIIDFKQITL 479 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 L ++S P+G GN PVF PN ++ + + HL++ +D ++A+A+R Sbjct: 480 ELFQQIDSLQPWGIGNELPVFWTPNVRVVEQKTIGKNHLKLLLAQRDDTRIKALAWRWGE 539 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAK 599 R+ + L N W G+ ++ ++ P E K Sbjct: 540 YC-------PLPTRLDIAYKLKENTWNGNTTIEIELVGVRLPQENDSIKK 582 >gi|237714403|ref|ZP_04544884.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D1] gi|262408235|ref|ZP_06084782.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_22] gi|294806119|ref|ZP_06764971.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides xylanisolvens SD CC 1b] gi|229445567|gb|EEO51358.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D1] gi|262353787|gb|EEZ02880.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 2_1_22] gi|294446633|gb|EFG15248.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides xylanisolvens SD CC 1b] gi|295086543|emb|CBK68066.1| exonuclease RecJ [Bacteroides xylanisolvens XB1A] Length = 572 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V +ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|294645404|ref|ZP_06723111.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus SD CC 2a] gi|292639259|gb|EFF57570.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides ovatus SD CC 2a] Length = 583 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 15 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 73 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 74 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 133 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 134 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAI 193 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 194 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 248 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 249 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 308 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 309 GKEAVDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 367 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 368 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 424 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ + + T+ V +ID ++ ++ Sbjct: 425 LENFGGHTYAAGLSMKVENVDAFTKRFEDYVSRHILPEQTSAVIEIDAEIDFRDISSKFF 484 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 485 NDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 544 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 545 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 583 >gi|238792837|ref|ZP_04636468.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia intermedia ATCC 29909] gi|238727945|gb|EEQ19468.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia intermedia ATCC 29909] Length = 577 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+P L D + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKTA---TELERGVKGLLP-WQQLDGIDAGVTLLQQALADKRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNVDYLVPNRFDDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A GI V+V DHH A A++NPN + L GV F Sbjct: 138 NGISSHAGVDLAHTLGIQVLVTDHHLPGETLPAAEAIINPNLVGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRVSGWFEQRALAEPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL++DD + Sbjct: 258 GKCRPGVRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLTDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDALNQARREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG L + +++ ++L GP+G P Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576 >gi|320323164|gb|EFW79253.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. glycinea str. B076] gi|320329565|gb|EFW85554.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 571 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 284/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|308535303|ref|YP_003933722.1| single-stranded DNA-specific exonuclease RecJ [Geobacter bemidjiensis Bem] gi|308052648|gb|ADO00810.1| LOW QUALITY PROTEIN: single-stranded DNA-specific exonuclease RecJ [Geobacter bemidjiensis Bem] Length = 569 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 187/582 (32%), Positives = 281/582 (48%), Gaps = 21/582 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 I+ W G+ AL + P ++AR+L NR + + AK +L+P + L + Sbjct: 4 ITHKIWRPREADPGVVDALT---RCGFPALLARLLANRGIDGETGAKAYLSPVLSGL-EN 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 PL++ +A R+ A SE++ + GDYDVDG + AL++ F ++ YIP R+ Sbjct: 60 PLLMKGMAEAVERLALARTRSERVCVHGDYDVDGVTASALLISFFRAVGIDCFPYIPKRL 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG +P + GA +++TVDCG TS D GID+IV DHH A Sbjct: 120 TEGYGLSPQGVAAAAKGGATVLVTVDCGITSIDEGLLCRQSGIDLIVTDHHAPGERLPEA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLLDLVALATV 250 A++NP + L GV F +L+ + LR DN DL LDLVAL TV Sbjct: 180 LAVINPLQPGCRFPFKSLAGVGVAFHLLIALRARLRADNCFTAGEPDLKEYLDLVALGTV 239 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 DVVPL+G NR V GL G+ AL E ++ + +G+ + P INA GR Sbjct: 240 ADVVPLLGANRILVSYGLKQLSAGSRVGIAALKEVAGVTGEVGCGAVGFRLAPRINAAGR 299 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + ++ LG LL++ D +A LD N R+ +E A LE+A + + + + Sbjct: 300 LEDAALGLELLLTGDRDRAREIAALLDDSNGERQALERATLEEA--RAMLEQGACRGRKS 357 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 IV+ D WHPG++G++A+R+ E F RP + E G G GSGRSI F + + + + Sbjct: 358 IVLGSDLWHPGVIGIVASRIVELFHRPVILFA-FEGGTGRGSGRSISRFHLLEAIRSCGQ 416 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 L++ GGH+ AAGL++ + A + TP D L AV+ Sbjct: 417 H--LLRFGGHSHAAGLSIAEE-ALDSFSLSFEEAAQALDDEALTPTLAYDLELLPGAVDE 473 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 AL+ LE P+G GNP P+F +++ RV+ HL++ AIAF + Sbjct: 474 ALVSELERMKPFGMGNPEPLFLMKGVRVEDCRVLKGGHLKLKVVH-GGRAFDAIAFGLAD 532 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +R+ + +N W G K QL V D V Sbjct: 533 --------KGGAQRVDLVCSPGINVWNGKKSLQLTVKDLREV 566 >gi|253700410|ref|YP_003021599.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M21] gi|251775260|gb|ACT17841.1| single-stranded-DNA-specific exonuclease RecJ [Geobacter sp. M21] Length = 569 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 182/582 (31%), Positives = 281/582 (48%), Gaps = 21/582 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 I+ W + A+T+ P ++AR+L NR + + AK +L+P + L + Sbjct: 4 ITHKIW--RPREADPAAVDALTRS-GFPALLARLLANRGIDGEKGAKAYLSPVLSGL-EN 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P+++ +A R+ A E++ + GDYDVDG + AL++ F ++ YIP R+ Sbjct: 60 PMLMKGMAEAVERLALARTRHERVCVHGDYDVDGVTASALLIGFFRAVGIDCFPYIPKRL 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG +P + GA +++TVDCG TS D GID+IV DHH A Sbjct: 120 TEGYGLSPQGVAAAAKGGATVLVTVDCGITSLDEGLLCREAGIDLIVTDHHAPGERLPEA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATV 250 A+++P + L GV F +L+ + LR DN DL LDLVAL TV Sbjct: 180 LAVIDPLQPGCPFPFKSLAGVGVAFHLLIALRARLRADNSFTACEPDLKEYLDLVALGTV 239 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 DVVPL+G NR V GL G+ AL E ++ + +G+ + P INA GR Sbjct: 240 ADVVPLLGPNRILVSYGLKQLSAGSRVGIAALKEVAGVTGEVGCGAVGFRLAPRINAAGR 299 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + ++ LG LL++ D +A LD N R+ +E A L++A + + + + Sbjct: 300 LEDAALGLELLLTGDPARAREIAALLDDSNGERQALERATLDEA--RAMLEQGACRGRKS 357 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 IV+ D WHPG++G++A+R+ E F RP + E G G GSGRSI F + + Sbjct: 358 IVLGSDLWHPGVIGIVASRIVELFHRPVILFA-FEGGTGRGSGRSISRFHLLDAIRTC-- 414 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 L++ GGH+ AAGL++ F++ A + TP D L AV+ Sbjct: 415 GKHLLRFGGHSHAAGLSIAEEELDSFSLSFEQAAQA-LDDDALTPTLAYDLELLPGAVDE 473 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 AL+ LE P+G GNP P+F +++ RV+ HL++ +AIAF + Sbjct: 474 ALVTELERMKPFGMGNPEPLFLMKGVRVEDCRVLKGGHLKLKVVH-GGRAFEAIAFGLAD 532 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +R+ + +N W G + QL V D V Sbjct: 533 --------KGGAQRVDLVCSPGINVWNGKRSLQLTVKDLREV 566 >gi|152984597|ref|YP_001346779.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PA7] gi|150959755|gb|ABR81780.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PA7] Length = 571 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 176/564 (31%), Positives = 280/564 (49%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++AR+ R V L+ + L+P L ++ +V+A+ ++I+I Sbjct: 17 DLPPLLARLYAARGVRCAEE---LDKGLARLIPY-QRLKGIEEGVALLVEALEGGQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + ++ + L + + +P+R GYG P ++ + + L++TV Sbjct: 73 VGDFDADGATASSVGVLALRMLGASWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +Q A G+ V+V DHH E A A++NPN+ + GV+F Sbjct: 133 DNGISSVDGVQAAKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + LR+ +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVMLALRARLRELGWFDRRGLKEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+AL+E IT+ +LG+++GP +NA GR+ + +LG L+ +D Sbjct: 253 AGRARPGLRALLEVAGRPPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + Q + + WH G++G+LA+RL Sbjct: 313 DMAVQLDQLNQDRKAIEQGMQREALAQLKDLSLE-QLPFGLCLFDADWHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + DG GS RSI GF I + A G++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + NFG F + DG L+ ++ L L AGP+G P Sbjct: 432 PQENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L R+V HL++ +S+ L IAF V + + Sbjct: 492 PMFHG-VFQLVQQRIVGERHLKLALKSECGSLQLDGIAFNVDREQWP----NPTVRWAEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG + QL V+ +P Sbjct: 547 AYRLDVNEFRGQESVQLMVVHLAP 570 >gi|281420793|ref|ZP_06251792.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella copri DSM 18205] gi|281405085|gb|EFB35765.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella copri DSM 18205] Length = 573 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 165/586 (28%), Positives = 281/586 (47%), Gaps = 22/586 (3%) Query: 16 FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W E A + K + ++A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYESPTPEQQKAAEELGAKLNMSPVLAHLLIKREITTESAAKRFFRPQLSDLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDIAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + ++YA + GID I+ DHH PA A Sbjct: 122 GYGVSKKGIDFAHQTGVKLIIILDCGIKAIQEIEYAKSLGIDFIICDHHVPDDVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDPFPFKHLCGCGVGFKFMQAFAK-----NNNIPFSRLIPLLDFCAVSIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLK++I+ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILAFHGLKLLNTNPSIGLKSIIDICGLNGRELSMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 L LL+ D +A ++ N+ R+ ++ M E+A ++++ + ++ S IV Sbjct: 297 NGKLSVDLLVERDYSSALRMARHINEYNEQRKDIDKQMTEEANG-IVSRLESMKHNSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFDI + Sbjct: 356 LYDEGWKKGVIGIVASRLTEIYFRPTIVLT-RDGDMATGSARSVTGFDIYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT++ D FQ + + T P+ ID ++ + L Sbjct: 413 LLLNFGGHTYAAGLTLKWDKVREFRDRFQHYVEEHISPQQTEPMLNIDAEIDFKDITKHL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G N P+F + +VV H+++ + S L IAF Sbjct: 473 QADLKRFSPFGPCNQKPIFCTNRVYDYGTSKVVGREQEHIKLELVDSKSSTVLNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + + + N ++ + QL++ D P EG Sbjct: 533 S----AAARYIKSKRSFDIAFTIEENIFK-KNQVQLQIEDIRPNEG 573 >gi|196250102|ref|ZP_03148796.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. G11MC16] gi|196210286|gb|EDY05051.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus sp. G11MC16] Length = 785 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 283/589 (48%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW E + ++ I ++A++LV R V + A FL+P + DP +L Sbjct: 7 RWEVDCPDE--QTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDP-LGQPFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A RR+ +AI E ++++GDYD DG S ++M+ L + YIP+R +GY Sbjct: 64 DGMERAVRRLERAINTGELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G +I+TVD G + D + A G+DVIV DHH+ AYA++ Sbjct: 124 GPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEWGLDVIVTDHHEPGPVLPEAYAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L GV F V + + LLDLVA+ T+ D+VP Sbjct: 184 HPKKPGSTYPFRDLAGVGVAFKVAHALLGRVP-----------RHLLDLVAIGTIADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314 L+G NR +GL R GL+AL + I + + + +G+ I P +NA GR+G + Sbjct: 233 LVGENRLLAAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL++DD E LA ++D LN+ R+ + + M E+A V Q + V+VV Sbjct: 293 DPAVALLMTDDEGEAARLAQEMDELNRERQQLVAQMAEEAAEMVRRQFPPEEHR-VLVVA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+PG+VG++A++L E+F RP+ +S E G GS RSI GFD+ S + I Sbjct: 352 GEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDL--FASLSQCRDI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A + TP ID + + ++ Sbjct: 410 LPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAA 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 E P+G NP P+ ++++R V H++ F SQ+ + AI F + Sbjct: 470 RSFERLAPFGVSNPRPLLLIEEVAVETMRRVGANGAHMKAVF-SQNGAAIDAIGFGLG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + G + G L VN W G + QL + D + F + Sbjct: 527 --PLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLCDVAVSSCQVFDAR 573 >gi|330985063|gb|EGH83166.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. lachrymans str. M301315] Length = 571 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 284/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRMNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|229019632|ref|ZP_04176443.1| Exonuclease RecJ [Bacillus cereus AH1273] gi|229025871|ref|ZP_04182267.1| Exonuclease RecJ [Bacillus cereus AH1272] gi|228735423|gb|EEL86022.1| Exonuclease RecJ [Bacillus cereus AH1272] gi|228741656|gb|EEL91845.1| Exonuclease RecJ [Bacillus cereus AH1273] Length = 779 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYSE--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A + GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKDLGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|206976087|ref|ZP_03236997.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus H3081.97] gi|217961900|ref|YP_002340470.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH187] gi|222097854|ref|YP_002531911.1| single-stranded-DNA-specific exonuclease [Bacillus cereus Q1] gi|229141148|ref|ZP_04269689.1| Exonuclease RecJ [Bacillus cereus BDRD-ST26] gi|206745839|gb|EDZ57236.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus H3081.97] gi|217063172|gb|ACJ77422.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH187] gi|221241912|gb|ACM14622.1| single-stranded-DNA-specific exonuclease [Bacillus cereus Q1] gi|228642311|gb|EEK98601.1| Exonuclease RecJ [Bacillus cereus BDRD-ST26] Length = 779 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M+ TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|260171916|ref|ZP_05758328.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D2] gi|315920228|ref|ZP_07916468.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D2] gi|313694103|gb|EFS30938.1| single-stranded-DNA-specific exonuclease recJ [Bacteroides sp. D2] Length = 572 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQAETSQTLAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSIALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V +ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVNAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 SDLKKFNPFGPDNTKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKPIE 572 >gi|257487143|ref|ZP_05641184.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 571 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DDS Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDSTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|229543714|ref|ZP_04432774.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus coagulans 36D1] gi|229328134|gb|EEN93809.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus coagulans 36D1] Length = 787 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 185/589 (31%), Positives = 286/589 (48%), Gaps = 29/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW + A I+Q+ + +V+++LVNR ++ + A+ FL L DP +L Sbjct: 7 RWRVPEMEP--KAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHE-GLAYYDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KAA RI +AI E +++FGDYD DG S A+MM L+ +A YIPDR +GY Sbjct: 64 HDMEKAAARIREAIKKEEPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + + EG QLIITVD G + + A GI +I+ DHH+ A+A+V Sbjct: 124 GPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVARELGITLIITDHHEPGPVLPEAFAIV 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L AGV F V +Y + + L DL A+ TV D+VP Sbjct: 184 HPKHPESTYPFRELSGAGVAFKVAHALYGKVPE-----------QLEDLAAIGTVADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L+ NR + G+ R GL AL +I I E +G+++ P +NA GR+ + Sbjct: 233 LLDENRLIAINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL+++D++E MLA +D LN+ R+ + + M +A V + + A V+VV Sbjct: 293 APAAELLMTEDTEEAGMLAETIDGLNKERQKIVNDMTNEAIELVEEEV--EKGARVLVVG 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+ G++G+ A+RL E+F RP+ +SF E G GS RSI+GF + + I Sbjct: 351 KEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHM--FNELSKCRDI 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A +P + PV I ++ + I Sbjct: 409 LPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAA-LPDEMFVPVTNISAEISIEEAGMEAI 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + P+G NP P+ + IR + HL++T S++ TL I F + Sbjct: 468 REMALLSPFGTANPKPLLLLDGAECPQIRAIGADGKHLKLTL-SKNGTTLDGIGFGLGHL 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G L +N W ++ Q+ V D F + Sbjct: 527 ----APHISPSACISVVGELSINEWNNIRKPQMMVKDIKITNWQLFDFR 571 >gi|254976341|ref|ZP_05272813.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-66c26] gi|255093726|ref|ZP_05323204.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile CIP 107932] gi|255101917|ref|ZP_05330894.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-63q42] gi|255315478|ref|ZP_05357061.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-76w55] gi|255518141|ref|ZP_05385817.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-97b34] gi|255651257|ref|ZP_05398159.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-37x79] gi|260684321|ref|YP_003215606.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile CD196] gi|260687980|ref|YP_003219114.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile R20291] gi|306521099|ref|ZP_07407446.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-32g58] gi|260210484|emb|CBA64963.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile CD196] gi|260213997|emb|CBE06114.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile R20291] Length = 816 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 179/581 (30%), Positives = 302/581 (51%), Gaps = 23/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W+ G ++K I + ++L NR + + ++ F+NPS+ L DP + Sbjct: 2 KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI A+ +EKI I+GDYDVDG +S +++ + N + YIP+R+ +G Sbjct: 59 MKDMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + G LII+VDCG TS + A + GIDVI+ DHH+ +SE A+A+ Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D LC GV F ++ + K + + L++V LAT+CD+V Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKMIQAL------TPKEEFKTSMYNYLEIVTLATICDIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PLI NR V GL + N GL+ LI+ + I + ++G+ IGP INA GR+G Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L + +E +A L+ N R+++E+ M +AE + + V+V+ Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W GI+G++A++L EK+ +P+ + E+G+ GS RSI+GF+I + + + + Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAGL+++ N L + KFA + ++ L + +N+ L+ Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 + L P+G NPNP F N+ L+ ++V+ HL+++ E + ++ + I F + Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKE--KSYECIGFNMSHL 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 M G ++ V L N + G+++ Q + D Sbjct: 527 K----SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563 >gi|261867768|ref|YP_003255690.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413100|gb|ACX82471.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter actinomycetemcomitans D11S-1] Length = 573 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 169/563 (30%), Positives = 283/563 (50%), Gaps = 18/563 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ +R++ L+ ++ + +P +++ D A +++A +KI+I G Sbjct: 19 DPLLDRLYRSRHIKNA---CQLDRTLAAIH-NPNLMSGLDDAVALLLEAYEKQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L VN +P+R GYG + ++ ++ + +L+ITVD Sbjct: 75 DFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +G++VIV DHH A A++NPN +L GV F + Sbjct: 135 GVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAHCGFPSKNLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + R+ + LLDLVAL TV DVVPL NR V +GL + ++ Sbjct: 195 MLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++AL E + +A +LG+ I P +NA GR+ ++G LL+++D + LA+ Sbjct: 255 RFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMESARALAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + Q IV+ WH G++G++A+R+K++ Sbjct: 315 ELDGLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERV 451 F RP A + E+DG GS RSI G I + + ++K GGHAMAAGL++ Sbjct: 375 FHRPVIAFAQEQDGILKGSARSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINEN 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + ++ DG L+ + +N+ + L+SAGP+G P P+F Sbjct: 435 YFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R+V HL+M ES+ + AIAF V + + K + Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSI----KTAKLVYK 549 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL + P+E Sbjct: 550 LDINEFRGNRDIQLLIDYIEPLE 572 >gi|145298070|ref|YP_001140911.1| RecJ single-stranded-DNA-specific exonuclease [Aeromonas salmonicida subsp. salmonicida A449] gi|142850842|gb|ABO89163.1| RecJ single-stranded-DNA-specific exonuclease [Aeromonas salmonicida subsp. salmonicida A449] Length = 576 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 183/564 (32%), Positives = 281/564 (49%), Gaps = 19/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ +V +R V L S L+P P L ++A + A+ ++I+I Sbjct: 20 LHPLLRQVFASRGV---EDPVLLERSASQLLP-PQRLFGMEQAVPLLAAALTAQQRILIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + + +P+R GYG P ++E + GA+ +ITVD Sbjct: 76 GDFDCDGATSSALCVLALRAMGGHHIDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + A G+ V+V DHH E A A+VNPN+ L GV F Sbjct: 136 NGISSIAGVAAAKAAGMQVLVTDHHLPGHELPAADAIVNPNQHGCDFPSKSLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LRQ ++ LDLVAL TV DVV L G NR V +GL R Sbjct: 196 LMAALNTHLRQLGWYERQGIRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRA 255 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL++ +TA +LG+ +GP +NA GR+ + +LG L+SDD Sbjct: 256 GRCRPGIQALVDVSGRDGRRLTAADLGFALGPHLNAVGRLDDMSLGVACLLSDDLNLARQ 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA ++D LNQ R+ +E M ++A A + + D + S IV+ D WH G+VGL+A+++ Sbjct: 316 LASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRDEWHQGVVGLVASKV 375 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEK+ RP A + + + GSGRSI G + + G++ K GGHAMAAGLT+ Sbjct: 376 KEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTL 435 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + N F+ +V + T V DG L +++ L +++ ++GP+G P Sbjct: 436 PKANIEAFGRAFETVIGELVTPELLTGVLLTDGELLPDELSLELAELIRASGPWGQAFPE 495 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 P+F L R+V HL+M + + AIAF V + + KR+ + Sbjct: 496 PLFDGEFV-LVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWPD----ASVKRVRLV 550 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN WRG++ QL V Sbjct: 551 YRLDVNEWRGNRSVQLLVEHLEAA 574 >gi|218708548|ref|YP_002416169.1| ssDNA exonuclease RecJ [Vibrio splendidus LGP32] gi|218321567|emb|CAV17519.1| Single-stranded-DNA-specific exonuclease recJ [Vibrio splendidus LGP32] Length = 578 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 177/568 (31%), Positives = 280/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ V+R + L + + L L D A + +AI ++I+I Sbjct: 18 HLPDLLKRIYVSRGIDSADQ---LETAAKGLHSY-QKLGGIDAAVELLFKAIQQQKRIII 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIELGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +++A +G+DV+V DHH SE A A+VNPN L GV F Sbjct: 134 DNGVSSIDGVRFAKEKGLDVLVTDHHLPGSELPIADAMVNPNLESCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ + L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A + S + + WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G GS RSI G + + G+++K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F R F + + DG L ++ + L S GP+G P Sbjct: 434 IMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAETLRSGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K +H+ L +N +RG++ QL + Sbjct: 549 KTVHLAFKLDINEFRGNQSLQLMIDHIE 576 >gi|154492880|ref|ZP_02032506.1| hypothetical protein PARMER_02519 [Parabacteroides merdae ATCC 43184] gi|154087185|gb|EDN86230.1| hypothetical protein PARMER_02519 [Parabacteroides merdae ATCC 43184] Length = 574 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 166/581 (28%), Positives = 283/581 (48%), Gaps = 21/581 (3%) Query: 17 RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W +E +++ + + + +V +LV R ++ + K F PS+ L DP + Sbjct: 4 KWNFQTPTEEELHKRDRLASQLGLSPVVCLLLVQRGLTTVEEVKKFFKPSLNDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA +R+ +A+ N EKI+I+GDYDVDG +V+L+ ++L S + YIPDR +G Sbjct: 63 MPDMEKAVKRLNKALGNKEKILIYGDYDVDGTTAVSLVYKYLRPYSSALDYYIPDRYDEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + G L+I++DCG + + ++YA GID I+ DHH A A+ Sbjct: 123 YGISYKGINYARENGITLVISLDCGIKAIEKIEYAKQLGIDFIICDHHMPDDTLPDAVAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ R+D + HL GV F + + N P DL LL+L A++ D+V Sbjct: 183 LDAKRVDSVYPYEHLSGCGVGFKFMQAFAK----SNNFP-FADLEKLLELTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 P+ G NR GL + GLK +I+ +S IT ++ + IGP INA GR+ Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLSGKEITISDIVFKIGPRINASGRMMN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL++ D + ++ N+ RR ++ + ++A A + + +++ I+V Sbjct: 298 GKEAVELLLAKDVDVAREKSESINQYNEERRELDKKITDEANAII-DEFQNMEDRKAIIV 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK+ RP+ ++ + GS RS+ GFDI K + + Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F K A + + TP ID VL+ +N + Sbjct: 414 LENFGGHTYAAGLSLKEENLDAFTQRFLKLAADEIIPEQMTPQIDIDAVLDLQDINAKFM 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF-ESQDSETLQAIAFRVY 549 L+ P+G N PVF K + ++V H+++ + + + + IAF ++ Sbjct: 474 SELKKMNPFGPDNQKPVFCSLGVKDYGTSKLVGKDLEHIKLELIDDKSNTPIHGIAFGMH 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K ++ + N + G+ QL V D Sbjct: 534 QHN----THIKNMKPFNICYTIEENTYNGNTSLQLMVKDIK 570 >gi|255656731|ref|ZP_05402140.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile QCD-23m63] Length = 816 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 297/579 (51%), Gaps = 19/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W+ G ++K I + ++L NR + + ++ F+NPS+ L DP + Sbjct: 2 KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI A+ +EKI I+GDYDVDG +S +++ + + + YIP+R+ +G Sbjct: 59 MKDMQKAVDRIKSAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYHVDYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + G LII+VDCG TS + A + GIDVI+ DHH+ ++E A+A+ Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQNEIPVAFAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D LC GV F ++ + K + L++V LAT+CD+V Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKIIQAL------TPKEEFKTSMYDYLEIVTLATICDIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PLI NR V GL + N GL+ LI+ + I + ++G+ IGP INA GR+G Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L + +E +A L+ N R+++E+ M +AE + + V+V+ Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W GI+G++A++L EK+ +P+ +S E+G+ GS RSI+GF+I + + + + Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLS-IENGEATGSARSIKGFNIFEALVKC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAGL+++ N L + KFA + ++ L + +N+ L+ Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENINVEFELQENVINLNLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 + L P+G NPNP F N+ L+ ++V+ + + ++ + I F + Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLNIEKEKSYECIGFNMSHLK- 527 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 M G ++ V L N + G+++ Q + D Sbjct: 528 ---SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563 >gi|255307786|ref|ZP_05351957.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile ATCC 43255] Length = 816 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 178/581 (30%), Positives = 301/581 (51%), Gaps = 23/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W+ G ++K I + ++L NR + + ++ F+NPS+ L DP + Sbjct: 2 KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI A+ +EKI I+GDYDVDG +S +++ + N + YIP+R+ +G Sbjct: 59 MKDMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + LII+VDCG TS + A + GIDVI+ DHH+ +SE A+A+ Sbjct: 119 YGINEDAIKLISSRECDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D LC GV F ++ + K + + L++V LAT+CD+V Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKMIQAL------TPKEEFKTSMYNYLEIVTLATICDIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PLI NR V GL + N GL+ LI+ + I + ++G+ IGP INA GR+G Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L + +E +A L+ N R+++E+ M +AE + + V+V+ Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W GI+G++A++L EK+ +P+ + E+G+ GS RSI+GF+I + + + + Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAGL+++ N L + KFA + ++ L + +N+ L+ Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 + L P+G NPNP F N+ L+ ++V+ HL+++ E + ++ + I F + Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKE--KSYECIGFNMSHL 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 M G ++ V L N + G+++ Q + D Sbjct: 527 K----SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563 >gi|261345594|ref|ZP_05973238.1| single-stranded-DNA-specific exonuclease RecJ [Providencia rustigianii DSM 4541] gi|282566074|gb|EFB71609.1| single-stranded-DNA-specific exonuclease RecJ [Providencia rustigianii DSM 4541] Length = 577 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 178/565 (31%), Positives = 279/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP+++ R+ +R ++ + L L+ + L+ D + + +A+ +KI I Sbjct: 21 DIPELLQRIYASRGITD---RTQLERKASHLL-NYQSLSGIDNSLDILYRALTEHQKITI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL MR L N N +P+R +GYG P ++++ +G LIITV Sbjct: 77 VGDFDADGATSTALAMRALKAMGYANLNYIVPNRFENGYGLTPLVVDEAYKQGTDLIITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S++ ++ A G+ VI+ DHH A A++NPN + L GV F Sbjct: 137 DNGISSHEGVETAHQYGMKVIITDHHLPGETLPNADAIINPNLHECQFPSKSLAGVGVTF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ +L LDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMSALRAHLRQVKWFEQQGISEPNLAEYLDLVALGTVADVVPLDMNNRILVHQGLNRVR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+KALIE S + A + G+ +GP +NA GR+ + ++ LL++DD Sbjct: 257 AGRCCAGIKALIEVSKRDSSRLVANDFGFALGPRLNAAGRLDDMSVSIELLLTDDMAYAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA +LD LNQ RR +E+ M ++A D Q + + + WH G+VG+LA+R Sbjct: 317 ELANELDGLNQTRRDIEAGMQQEALVLFNKINYSDSQLPNGLALYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRS++G + + + G++ K GGHAMAAGL+ Sbjct: 377 IKEQFHRPVIAFAPAGDGILKGSGRSVQGVHMRDALERLNTLQPGLMQKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F+ ++ + V DG L + ++ ++L +GP+G P Sbjct: 437 LEERKFETFKYHFESLMGELIQPEQLSGVIWSDGELLRNQFSLETAELLRESGPWGQAFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + +L ++V HL++ E L I F + + + K+ Sbjct: 497 EPIFDG-HFQLLQQKIVGEKHLKLMLEPVNGGPMLDGIMFNIDVRRWPD----NSVKKAK 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG K QL + P Sbjct: 552 IAFKLDVNEFRGQKNVQLMIEHIWP 576 >gi|331016316|gb|EGH96372.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 569 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 282/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252 Query: 274 QGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E + +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVARREPARSTSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTRAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RLKE Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPMESMPFGLCLFDAE-WHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L +AGP+G P P+ Sbjct: 432 DNFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVRLDGIAFSVDR----DIWPNPNIRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568 >gi|296452440|ref|ZP_06894141.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium difficile NAP08] gi|296877789|ref|ZP_06901815.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium difficile NAP07] gi|296258770|gb|EFH05664.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium difficile NAP08] gi|296431240|gb|EFH17061.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium difficile NAP07] Length = 816 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 296/579 (51%), Gaps = 19/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W+ G ++K I + ++L NR + + ++ F+NPS+ L DP + Sbjct: 2 KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI A+ +EKI I+GDYDVDG +S +++ + + + YIP+R+ +G Sbjct: 59 MKDMQKAVDRIKSAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYHVDYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + G LII+VDCG TS + A + GIDVI+ DHH+ ++E A+A+ Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQNEIPVAFAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D LC GV F ++ + K + L++V LAT+CD+V Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKIIQAL------TPKEEFKTSMYDYLEIVTLATICDIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PLI NR V GL + N GL+ LI+ + I + ++G+ IGP INA GR+G Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L + +E +A L N R+++E+ M +AE + + V+V+ Sbjct: 293 SYLGVELFTTQSQEEAVEIASILKEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W GI+G++A++L EK+ +P+ +S E+G+ GS RSI+GF+I + + + + Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLS-IENGEATGSARSIKGFNIFEALVKC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAGL+++ N L + KFA + ++ L + +N+ L+ Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENINVEFELQENVINLNLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 + L P+G NPNP F N+ L+ ++V+ + + ++ + I F + Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLNIEKEKSYECIGFNMSHLK- 527 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 M G ++ V L N + G+++ Q + D Sbjct: 528 ---SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563 >gi|238783656|ref|ZP_04627676.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia bercovieri ATCC 43970] gi|238715369|gb|EEQ07361.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia bercovieri ATCC 43970] Length = 577 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L D + QA+ +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALAERRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVELAHAKGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRDSGWFEQRALAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F + F + A V DG L ++I ++L GP+G P Sbjct: 438 EQDKFDQFRQCFADLVGEWMDASQLEGVIWSDGELKGGDLSIETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PIFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576 >gi|295689095|ref|YP_003592788.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter segnis ATCC 21756] gi|295430998|gb|ADG10170.1| single-stranded-DNA-specific exonuclease RecJ [Caulobacter segnis ATCC 21756] Length = 611 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 226/593 (38%), Positives = 335/593 (56%), Gaps = 9/593 (1%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 + AFLGVE S+SG W + I Q+H + + +AR L R VS++ ++ + Sbjct: 16 IAPSAFLGVEHSLSGRAWRERAADPLV--VRDIQQRHGLIEPLARALAARGVSLEQSEHY 73 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L P++R L PDP TD D+AA ++ A+ M+F DYDVDGA S A ++R+ + Sbjct: 74 LRPTLRALFPDPSSFTDMDRAAEILIDALAQGRPTMVFADYDVDGATSAAQLVRWFRYMG 133 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 V +YIPDR+ +GYGP+P+ K GA+L++T+DCG+ +YDA+ A G++V+VID Sbjct: 134 VELPIYIPDRLTEGYGPSPAAFRKIRESGAELVVTLDCGAAAYDAIASAAEIGLEVVVID 193 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFD 237 HH ++ + A A+VNPNR SGQG L AAGV F++L + R R+ D Sbjct: 194 HHLMREDPPAAAAVVNPNRPGCQSGQGVLAAAGVTFVLLAALNREARKRGLFTEDRPQPD 253 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 LDLVAL VCDV L+G NRA GL NPGLKAL E S P + + Sbjct: 254 PRQWLDLVALGEVCDVTQLVGFNRALTALGLRTMGAWANPGLKALFEVGKGSGPPSVFHA 313 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+++GP INAGGRIG S+LG+RLL +DD E LA +LD LN R+ +E+A++E+A A Sbjct: 314 GFILGPRINAGGRIGRSDLGARLLSTDDPLEARALAEELDGLNTERKAVEAAVVEEAAAM 373 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSI 416 + + + A VIVV G+ WHPG++G++A RL+E++ +P I G GSGRS Sbjct: 374 L-ERGNLNPDAPVIVVAGEDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQ 432 Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 G ++G+ + A E G+L+ GGGHAMAAGL++ F ++ + A+ Sbjct: 433 PGVNLGRAIQGAFEAGLLMAGGGHAMAAGLSIRPEAIPEFRAFLEQHLAGEMEAVGAEA- 491 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536 +ID +L A + AL D + P+G GNP P+FA + + + H+++ Sbjct: 492 VEIDVLLQPRAASRALHDDFQRLAPFGPGNPEPMFAMTQVRPDRVTALKGGHVRLDLVGP 551 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + ++A+++R TPLG L+ G + V G L + + G Q + DA Sbjct: 552 TGDRIKAVSWRSAETPLGRRLLAGGGA-LDVAGRLKPDDYMGRNGVQFEIEDA 603 >gi|293390161|ref|ZP_06634495.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950695|gb|EFE00814.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter actinomycetemcomitans D7S-1] Length = 573 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 169/563 (30%), Positives = 283/563 (50%), Gaps = 18/563 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ +R++ L+ ++ + +P +++ D A +++A +KI+I G Sbjct: 19 DPLLDRLYRSRHIKNA---CQLDRTLAAIH-NPNLMSGLDDAVALLLEAYEKQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L VN +P+R GYG + ++ ++ + +L+ITVD Sbjct: 75 DFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +G++VIV DHH A A++NPN +L GV F + Sbjct: 135 GVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAYCGFPSKNLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + R+ + LLDLVAL TV DVVPL NR V +GL + ++ Sbjct: 195 MLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++AL E + +A +LG+ I P +NA GR+ ++G LL+++D + LA+ Sbjct: 255 RFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMENARALAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + Q IV+ WH G++G++A+R+K++ Sbjct: 315 ELDGLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERV 451 F RP A + E+DG GS RSI G I + + ++K GGHAMAAGL++ Sbjct: 375 FHRPVIAFAQEQDGILKGSARSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINEN 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + ++ DG L+ + +N+ + L+SAGP+G P P+F Sbjct: 435 YFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R+V HL+M ES+ + AIAF V + + K + Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSI----KTAKLVYK 549 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL + P+E Sbjct: 550 LDINEFRGNRDIQLLIDYIEPLE 572 >gi|42783539|ref|NP_980786.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 10987] gi|42739468|gb|AAS43394.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 10987] Length = 779 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNS--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M+ TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|329926795|ref|ZP_08281203.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. HGF5] gi|328938995|gb|EGG35363.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. HGF5] Length = 800 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 169/581 (29%), Positives = 291/581 (50%), Gaps = 26/581 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W I + ++P IVA ++ +R + S + ++FL + L DP Sbjct: 4 SKYEWRIREAASTI--TERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTF-ELTHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ +A RI +A+ + E I+I+GDYD DG +S +LM+ + + ++YIP R Sbjct: 61 YLMLGMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRDLGASYDIYIPHRSN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ +G L+ITVD G ++ + + YA + GIDVIV DHH+ AY Sbjct: 121 EGYGLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPELLPEAY 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 AL+NP L GV + + + + L +V++ T+ D Sbjct: 181 ALINPKIPTCPYPFKGLAGVGVAYKLAQAL-----------VGDPPEEWLQIVSIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 ++PL G NR V G+ R+ G+++L+E I +TA N+ + + P INA GR+ Sbjct: 230 LMPLTGENRVLVKHGIESMRKTRYEGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL ++ +E E LA +LD LN++R+ + ++++A V + + VI Sbjct: 290 DHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWGGQEIPPVI 349 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G+ W+ G+VG++A+++ E+F RP + E G GS RSI GFDI + Sbjct: 350 VLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLSC-- 407 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + ++ GGH AAG+++ R ++A + + A V + D + S V++ Sbjct: 408 KDVMDHFGGHPSAAGMSLHRDRLEVFEQGLHRYAEDALEAEHLIAVCEADLEASLSEVSV 467 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 +++ +E GP+G N P F N ++ +R + HL++ + Q+ E + AI+F Sbjct: 468 PILEQMEQLGPFGMANAVPKIVFRNVVVKDVRKIGKEGKHLKLRLQ-QEREVIDAISFGW 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + L G + V G L VN W GS++ QL + D Sbjct: 527 G--HLADIL--PVGSVVDVLGELSVNEWNGSRKVQLMIQDI 563 >gi|154496366|ref|ZP_02035062.1| hypothetical protein BACCAP_00654 [Bacteroides capillosus ATCC 29799] gi|150274449|gb|EDN01526.1| hypothetical protein BACCAP_00654 [Bacteroides capillosus ATCC 29799] Length = 689 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 173/580 (29%), Positives = 277/580 (47%), Gaps = 23/580 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W A A + +P + A VL R + + AKDFL L+ DP + Sbjct: 4 RQWNLRAPSP---AAQAAMEADGVPPLAASVLCARGLDTVEKAKDFLRSD-EDLLWDPFL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D+A RI A+ +E I ++GDYDVDG S L+ +L YIPDR+ +G Sbjct: 60 MKDMDRAVSRIAAALDQNEHIAVYGDYDVDGITSTCLLTDYLRSRGAKVTPYIPDRMEEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + S + +G LIITVDCG T+ ++A + GIDV++ DHH+ K A A+ Sbjct: 120 YGLSCSAVSALHAKGVSLIITVDCGITAVAEAEFAASLGIDVVITDHHECKDRIPTAAAV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P+R D HL GV +++ + + L DL A+ TV DV+ Sbjct: 180 VDPHRRDCGYPFKHLAGVGVALKLVLALGDKTEES------ALLRRYADLAAVGTVADVM 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 ++G NR + GL + PGL+AL+ ++ +GY + P INA GR+G Sbjct: 234 QVVGENRTIIRMGLAALKNTVRPGLRALLHEAGLTERPLTSVSIGYTLAPRINASGRMGC 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + LL++ D E LA +L LN+ R+ +E + E E + + +V+ Sbjct: 294 AGLAAELLLTSDPARGEALARELCALNRERQAVELDIYE--ECVAMADAMRPEDRPALVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G+VG++A+RL EK+ P+F I +DGKG GS RS GF++ + + Sbjct: 352 AREGWHQGVVGIVASRLSEKYSCPTFMI-CLQDGKGKGSCRSFGGFNLFAALEQC--RDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH +AAG T+ + + + + ++D + + + + Sbjct: 409 LEGFGGHELAAGFTILEEHIPAFRERMLELVRSSTGGAAMEAALEVDAEADPALLTQEGV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ PYG GNP PVF+ + + V HL++ ++ + AI F V Sbjct: 469 LSLDLLEPYGTGNPKPVFSMSGCTVTNASEVGGGRHLKLKV-TKGGRSFDAIFFSVSLAE 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G + G R+ + +N +RG + QL+++D P Sbjct: 528 AG----LAPGDRVDLAFSPQINEFRGWRSVQLQLIDLRPA 563 >gi|318607023|emb|CBY28521.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia enterocolitica subsp. palearctica Y11] Length = 577 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L + + + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIEASVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCNFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRDSGWFEQRTLAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMFHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVTGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG LN + +++ ++L GP+G P Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576 >gi|238752992|ref|ZP_04614451.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia rohdei ATCC 43380] gi|238708780|gb|EEQ01039.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia rohdei ATCC 43380] Length = 577 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 277/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L + + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIEAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFDDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN + L GV F Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGDILPAAEAIINPNLVGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRESGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDSLNQARREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG L + +++ ++L GP+G P Sbjct: 438 EQEKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMLEPMNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576 >gi|228929454|ref|ZP_04092475.1| Exonuclease RecJ [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935729|ref|ZP_04098542.1| Exonuclease RecJ [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823967|gb|EEM69786.1| Exonuclease RecJ [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830242|gb|EEM75858.1| Exonuclease RecJ [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 779 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|238796544|ref|ZP_04640051.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia mollaretii ATCC 43969] gi|238719522|gb|EEQ11331.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia mollaretii ATCC 43969] Length = 577 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIDVGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRESGWFEQRALAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG L + ++I ++L GP+G P Sbjct: 438 EQDKFDEFRQCFADLVGEWMDASQLEGVIWSDGELQGNDLSIETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576 >gi|126700361|ref|YP_001089258.1| putative single-stranded-DNA-specific exonuclease [Clostridium difficile 630] gi|115251798|emb|CAJ69633.1| Single-stranded-DNA-specific exonuclease [Clostridium difficile] Length = 816 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 179/581 (30%), Positives = 302/581 (51%), Gaps = 23/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W+ G ++K I + ++L NR + + ++ F+NPS+ L DP + Sbjct: 2 KKWILKYK--GKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI A+ +EKI I+GDYDVDG +S +++ + N + YIP+R+ +G Sbjct: 59 MKDMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + G LII+VDCG TS + A + GIDVI+ DHH+ +SE A+A+ Sbjct: 119 YGINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D LC GV F ++ + K + + L++V LAT+CD+V Sbjct: 179 INPKQEDCNYPFDSLCGCGVAFKMIQAL------TPKEEFKTSMYNYLEIVTLATICDIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PLI NR V GL + N GL+ LI+ + I + ++G+ IGP INA GR+G Sbjct: 233 PLIDENRIIVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGY 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L + +E +A L+ N R+++E+ M +AE + + V+V+ Sbjct: 293 SYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSR-YNDDKVLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W GI+G++A++L EK+ +P+ + E+G+ GS RSI+GF+I + + + + Sbjct: 352 AKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAGL+++ N L + KFA + ++ L + +N+ L+ Sbjct: 409 MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 + L P+G NPNP F N+ L+ ++V+ HL+++ E + ++ + I F + Sbjct: 469 EELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKE--KSYECIGFNMSHL 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 M G ++ V L N + G+++ Q + D Sbjct: 527 K----SMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIRLA 563 >gi|229180685|ref|ZP_04308025.1| Exonuclease RecJ [Bacillus cereus 172560W] gi|228602830|gb|EEK60311.1| Exonuclease RecJ [Bacillus cereus 172560W] Length = 779 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLHLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|254508837|ref|ZP_05120947.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus 16] gi|219548223|gb|EED25238.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio parahaemolyticus 16] Length = 578 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 179/567 (31%), Positives = 280/567 (49%), Gaps = 24/567 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ RV ++R ++ L + R L L + A + AI ++I++ Sbjct: 19 IAPLLKRVYISRGITSPEQ---LETTARALHSY-QKLHGIEAAVELLFNAIAEQKRIIVV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S D ++YA QG+ V+V DHH E A+VNPN + L GV F Sbjct: 135 NGVSSIDGVRYAKEQGLKVLVTDHHLPGHELPNVDAMVNPNLQECAFPSKALAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +R++ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 195 LMMALCVHMRKNGWFAQQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254 Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL++++ Sbjct: 255 GKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMANNIHAARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LNQ R+ +E M ++A A Q D +V+ WH G++G+LA+R+ Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAFCERLQFGDSDMPHGLVLFQRDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEKF RP A + +G GS RSI G + ++ G++VK GGHAMAAGLT+ Sbjct: 375 KEKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDVLDRIDTQNPGLIVKFGGHAMAAGLTI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF R F + + V DG L ++ +ML + GP+G P Sbjct: 435 MESNFERFAKLFDEAVKQDLDEAALKGVILSDGELRPEEFSMHTAEMLRAGGPWGQAFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRGK 563 P+F K+ ++V HL++ E + + IAF V + + K Sbjct: 495 PLFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASVK 549 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +H+ L +N +RG++ QL + Sbjct: 550 TVHLAYKLDINEFRGNQSLQLMIDHLE 576 >gi|255690493|ref|ZP_05414168.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides finegoldii DSM 17565] gi|260623945|gb|EEX46816.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides finegoldii DSM 17565] Length = 572 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 161/584 (27%), Positives = 275/584 (47%), Gaps = 22/584 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ AK F P + L DP + Sbjct: 4 KWNYRPITPEQTETSQILAQELGISPILGQLLVQRGITKAADAKKFFRPQLPDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNLDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGISKKGVDYAAETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDEVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N RLD+ HL GV F + + L+ LLD+VA++ D+V Sbjct: 183 LNAKRLDNTYPYTHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDIVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAFHGLKQLNSNPSTGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A ++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKSMTEEANN-IVANLEGLADRRSIVI 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ + + + Sbjct: 357 YNEEWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYRAIEHC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+++ + T+ V ID ++ ++ Sbjct: 414 LENFGGHTYAAGLSMKVENVEEFTRRFEEYVSQHILPEQTSAVIDIDAEIDFRDISSKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 474 NDLKRFNPFGPDNMKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P+E Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEIQLQIEDIKPIE 572 >gi|229076040|ref|ZP_04209011.1| Exonuclease RecJ [Bacillus cereus Rock4-18] gi|229117908|ref|ZP_04247270.1| Exonuclease RecJ [Bacillus cereus Rock1-3] gi|228665565|gb|EEL21045.1| Exonuclease RecJ [Bacillus cereus Rock1-3] gi|228707074|gb|EEL59276.1| Exonuclease RecJ [Bacillus cereus Rock4-18] Length = 773 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 182/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E R + +K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNE--ERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A N +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|77457262|ref|YP_346767.1| exonuclease RecJ [Pseudomonas fluorescens Pf0-1] gi|77381265|gb|ABA72778.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens Pf0-1] Length = 569 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 178/561 (31%), Positives = 282/561 (50%), Gaps = 18/561 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V + L+ S+ L+P L D A +V A+ ++I+I Sbjct: 18 LPPLLTRLYAARGVQSE---AELDKSLARLIP-FQQLKGIDAAVDLLVTALEQRQRILIV 73 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITVD Sbjct: 74 GDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVAMTREPQLLITVD 133 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + + A G+ V++ DHH E A ALVNPN+ L GV+F Sbjct: 134 NGISSVEGVAAAKRHGLKVLITDHHLPGDELPQADALVNPNQPGCEFPSKALAGVGVIFY 193 Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 VL+ + LR ++ LLDLVAL +V DVVPL NR V +GL R + Sbjct: 194 VLMALRARLRSLGWYENKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253 Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG+KA++E S IT+ +LG+++GP +NA GR+ + +LG L++ D+ +A Sbjct: 254 ARPGIKAILEVAKREASRITSTDLGFIVGPRLNAAGRLDDMSLGIECLLTHDAALAREMA 313 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD +NQ+R+ +E M +A A++ + + + WH G++G+LA+R+KE+ Sbjct: 314 AQLDGMNQDRKSIEQGMQREALAQLKDLPVE-SMPFGLCLFDPEWHQGVIGILASRMKER 372 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVERV 451 + RP+ A + DG GSGRS++GF I +S A ++ K GGHAMAAGLT+ + Sbjct: 373 YFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPDLISKYGGHAMAAGLTLPQE 432 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 NF + F + T DG L ++ L L AGP+G P P+F Sbjct: 433 NFSLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 +L RVV HL++ +++ S L IAF + + K + + Sbjct: 493 HG-VFQLVEQRVVGERHLKVVLKTECGSVKLDGIAFGIDR----DIWPNPTIKWVELAYK 547 Query: 571 LCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 548 LDLNEFRGNETVQLMIAHIEP 568 >gi|257869427|ref|ZP_05649080.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus gallinarum EG2] gi|257803591|gb|EEV32413.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus gallinarum EG2] Length = 744 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 173/572 (30%), Positives = 278/572 (48%), Gaps = 29/572 (5%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + Q + ++ ++L RN+ + + FL P ++ L DP + D +KA RI AI N Sbjct: 1 MIQARGLSPLIGQLLWQRNIRTAADLQSFLEPDLQGLH-DPFLFYDMEKAVDRIQTAIMN 59 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 E+I+I+GDYD DG S ++ L + Y+P+R DGYGPN S+ + I G Q Sbjct: 60 EERILIYGDYDADGITSTTVLKEALELLGADVEFYLPNRFTDGYGPNLSVYQDKIAAGVQ 119 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 LIITVD G + ++AL YA +DVIV DHH++ E AYA+++P L Sbjct: 120 LIITVDNGVSGHEALAYAKEAQVDVIVTDHHELPPELPDAYAIIHPRHPLGNYPFSDLAG 179 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 GV F V + + + LLDLVA+ T+ D+V L G NR V GL + Sbjct: 180 VGVAFKVATALLEEVP-----------VELLDLVAIGTIADMVSLTGENRILVTNGLKMI 228 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 ++ GL ALIE I ++G+ IGP +NA GR+ ++N L+ + D +E + Sbjct: 229 QQTERAGLSALIEVSGLKKRAINETDIGFAIGPRLNAIGRLEDANPAVTLMSTFDPEEAQ 288 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +LA +LD +N R+ +L++A+ + V ++ GD WH G++G++A RL Sbjct: 289 LLANQLDTINLQRKQYVETILKEAQNMLSDSNQ------VHLIVGDDWHEGVLGIVAGRL 342 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 ++ GRP ++ + +G GSGRS+ ++ + + GGH A GL+V Sbjct: 343 MQQTGRPVLVLTKKSNGIAKGSGRSVAALNL--FDMLSGMREMFTSFGGHHAAVGLSVPI 400 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 + L + ++ + L + ID L+ + + I+ L+ P+G NP P Sbjct: 401 DHLSMLQERMNQYVVDNRIDLSSGIPLPIDEELSLAEITTNFIESLKILAPFGTDNPIPK 460 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F N + R + HL+++ ++ L I F G L++ + + V Sbjct: 461 FLITNISADNGRQIGTENQHLKVSLTDGENGQLDVIGFG-----FGSQLVEFESEGLAVV 515 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G L VN W G K+ QL + D F + Sbjct: 516 GQLSVNEWNGKKKPQLMLEDFEVNGIQLFDLR 547 >gi|330872798|gb|EGH06947.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 569 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 179/562 (31%), Positives = 284/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALRREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIACLLCDDPTLAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RLKE Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L +AGP+G P P+ Sbjct: 432 ENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFSVDR----DIWPNPNIRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568 >gi|257875789|ref|ZP_05655442.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus EC20] gi|257809955|gb|EEV38775.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus casseliflavus EC20] Length = 758 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 177/584 (30%), Positives = 283/584 (48%), Gaps = 29/584 (4%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCD 79 E + Q+ IP+ + +L RN+ + + FL+ ++ L DP + D Sbjct: 3 PQESETSTVFKELIQERKIPERIGALLWQRNIRTAEALDAFLSTDLQYLH-DPFLFHDMA 61 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 KA RI +AI N E+I+I+GDYD DG S ++ L A Y+P+R DGYGPN Sbjct: 62 KAVERIHEAILNGERILIYGDYDADGITSTTVLKETLELLGAEAEYYLPNRFTDGYGPNL 121 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 ++ + I G QLIITVD G + ++A+ YA QG+DVIV DHH++ +E A+A+V+P Sbjct: 122 TVYQDKIAAGTQLIITVDNGVSGHEAIAYAQGQGVDVIVTDHHELPAELPEAFAIVHPRH 181 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 G L GV F V + + + LLDLVA+ T+ D+V L Sbjct: 182 PQGNYPFGDLAGVGVAFKVACALLEEVP-----------VELLDLVAIGTIADMVSLTDE 230 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGS 318 NR V GL + ++ GL L+ + ++G+ +GP +NA GR+ + N Sbjct: 231 NRLLVSNGLKMIQQSDRIGLNELLSVSGLKKQTVNETDIGFAVGPRLNAIGRLEDPNPAV 290 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 RLL + D +E LA LD +NQ R+ ++++A+ K+ V +V GD W Sbjct: 291 RLLTTFDEEEAVSLAKTLDTINQQRKTFVEEIMKEAQEKI------DPANHVHLVVGDHW 344 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H G++G++A R+ + G+P ++ +E+G GSGRSI ++ + + + G Sbjct: 345 HEGVLGIVAGRIMQSTGQPVIVLTKKENGLAKGSGRSIAALNL--FEMLSTMKDMFTSFG 402 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH A GL++ + L ++ L ID L + V+I+ I+ L+ Sbjct: 403 GHHAAVGLSIPIDHLDMLQAQMNRYVEENAIDLSQGIPLAIDEELPLTEVSISFIESLKV 462 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G NP P F F N Q+ R + HL++ + + L I F G+ Sbjct: 463 LAPFGTDNPLPKFLFSNLMTQNARQIGSENQHLKLVMSDESNTQLDVIGFG-----FGKD 517 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L+ R+ + G L +N W G+K+ QL + D + F + Sbjct: 518 LVAFENDRLSIVGQLSINEWNGNKKPQLMLDDFAVEGIQLFDYR 561 >gi|238759280|ref|ZP_04620446.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia aldovae ATCC 35236] gi|238702441|gb|EEP94992.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia aldovae ATCC 35236] Length = 577 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 180/565 (31%), Positives = 275/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 21 HLPPLLRRLYASRGVKSPEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALADRRRIVI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TV Sbjct: 77 VGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A GI V+V DHH A A++NPN L GV F Sbjct: 137 DNGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMLALRARLRDCGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 257 AGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R Sbjct: 317 ALAIDLDSLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E+ F F + A V DG L + +++ ++L GP+G P Sbjct: 437 LEQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F ++ R+V HL++ E L IAF + T + S + + Sbjct: 497 EPTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVK 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL V P Sbjct: 552 LAYKLDINEYRGNRSVQLLVQHLWP 576 >gi|229198536|ref|ZP_04325240.1| Exonuclease RecJ [Bacillus cereus m1293] gi|228585039|gb|EEK43153.1| Exonuclease RecJ [Bacillus cereus m1293] Length = 779 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|255658297|ref|ZP_05403706.1| single-stranded-DNA-specific exonuclease RecJ [Mitsuokella multacida DSM 20544] gi|260849614|gb|EEX69621.1| single-stranded-DNA-specific exonuclease RecJ [Mitsuokella multacida DSM 20544] Length = 668 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 186/591 (31%), Positives = 288/591 (48%), Gaps = 22/591 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W + A Q+ VA +L +R + + D A+ FL+P RL DP Sbjct: 3 KKWKLYEPVPELA---AFAQEIGRDTTVAALLWHRGIRTRDAAELFLHPE-RLPFADPFA 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA RI +A+ E I ++GDYDVDG + +L+ R L + YIPDR+ +G Sbjct: 59 MRDMDKAVARIQKALAQGEHITVYGDYDVDGMTATSLLTRTLRKFGAKVDFYIPDRMTEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI-DVIVIDHHQVKSEEIPAYA 193 YG N +E+ + L++TVDCG S + G D+I+ DHH SE PA A Sbjct: 119 YGLNRRALEEIAE-QSDLLVTVDCGIASVADVAAIQGAGKLDIIITDHHLPGSELPPACA 177 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP+R D L GV F + + R L+LVAL TV D+ Sbjct: 178 VLNPHRADCPYPDKDLAGVGVAFKLCQALAAA-RSGKLWDGQSAFTDDLELVALGTVADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VPL G NR V +G+ PG+ AL+E ITA +LG+++ P +NA GRI Sbjct: 237 VPLRGENRRIVKQGMARMEATALPGVAALVEVAGLKDKKITAGHLGFLLAPRLNAAGRIE 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL ++D + + LA++LD LN RR +ES + + AE ++ + D+ + IV Sbjct: 297 SARTGVALLTAEDRAQADKLALELDALNTERREIESTICQTAEQEL--ESLDMAETKAIV 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V G W+PG++G+ A+RL +KF +P+ +S +EDG GS RSIEG ++ + +S E Sbjct: 355 VAGKGWNPGVIGIAASRLVDKFYKPTIVLSVQEDGICRGSCRSIEGLNMYEALSACKEH- 413 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L++ GGHAMAAGL++ F +A + P ++ + + + L Sbjct: 414 -LLQFGGHAMAAGLSLREEELPAFRAAFAAYAGAHLSEEDYEPKVSVEFEMMPEELTLDL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 ++ L PYG GNP P F N + + + HL+ ++D + ++ + Sbjct: 473 VEELSLLEPYGMGNPKPYFGCRNVRGREAMAIGREQNHLRFKLGTED-APVTSLMWNRAD 531 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH-FAKK 600 + + V +N W G + Q V D SP + F +K Sbjct: 532 -----LAAAVNRETLDVVYAPAINEWNGRRSLQCMVEDLSPAQSERVFPEK 577 >gi|324328312|gb|ADY23572.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus thuringiensis serovar finitimus YBT-020] Length = 779 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNS--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M+ TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|218261690|ref|ZP_03476425.1| hypothetical protein PRABACTJOHN_02093 [Parabacteroides johnsonii DSM 18315] gi|218223854|gb|EEC96504.1| hypothetical protein PRABACTJOHN_02093 [Parabacteroides johnsonii DSM 18315] Length = 574 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 166/581 (28%), Positives = 283/581 (48%), Gaps = 21/581 (3%) Query: 17 RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W +E +++ + + + V +LV R + +++ K F PS+ L DP + Sbjct: 4 KWNFQTPTEEELHKRDKLASEMGLSPFVCLLLVQRGLSTVEEVKKFFKPSLNDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA +R+ +A+ N EKI+I+GDYDVDG +V+L+ ++L S + YIPDR +G Sbjct: 63 MPDMEKAVKRLNKALGNKEKILIYGDYDVDGTTAVSLVYKYLRPYSSTLDFYIPDRYDEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G L+I++DCG + + ++YA GID I+ DHH A A+ Sbjct: 123 YGISYKGIDYARENGITLVISLDCGIKAIEKIEYAKQLGIDFIICDHHMPDDTLPDAVAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ R+D + HL GV F + + N P DL LL+L A++ D+V Sbjct: 183 LDAKRVDSVYPYEHLSGCGVGFKFMQAFAK----SNNFP-FADLEKLLELTAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 P+ G NR GL + GLK +I+ +S IT ++ + IGP INA GR+ Sbjct: 238 PITGENRILAYYGLKQLNSNPSLGLKGIIDICGLSGKEITISDIVFKIGPRINASGRMMN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL++ D + ++ N+ RR ++ + ++A A + + +++ I+V Sbjct: 298 GKEAVELLLAKDVDVAREKSESINQYNEERRELDKKITDEANAII-DEFQNMEDRKAIIV 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL EK+ RP+ ++ + GS RS+ GFDI K + + Sbjct: 357 YNPGWHKGVIGIVASRLTEKYYRPAVVLTKSSE-LITGSARSVTGFDIYKAIESC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F K A + + TP ID VL+ +N + Sbjct: 414 LENFGGHTYAAGLSLKEENLDAFTQRFLKLAADEIIPEQMTPQIDIDAVLDLQDINSKFM 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF-ESQDSETLQAIAFRVY 549 L+ P+G N PVF K + ++V H+++ + + + + IAF + Sbjct: 474 SELKKMNPFGPDNQKPVFCSLGVKDYGTSKLVGKDLEHIKLELIDDKSNTPIHGIAFGMR 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K ++ + N + G+ QL V D Sbjct: 534 QHN----THIKNMKPFNICYTIEENTYNGNTSLQLMVKDIK 570 >gi|157372124|ref|YP_001480113.1| ssDNA exonuclease RecJ [Serratia proteamaculans 568] gi|157323888|gb|ABV42985.1| single-stranded-DNA-specific exonuclease RecJ [Serratia proteamaculans 568] Length = 577 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 182/565 (32%), Positives = 276/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++ ++ R+ R V A+ L S++ ++P L D A + QA+ S +IM+ Sbjct: 21 SLHPLLRRLYALRGV---QAEQELERSVKGMLP-WQQLDGIDTAVGILQQALAASRRIMV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + + +P+R DGYG +P ++E+ GA+LI+TV Sbjct: 77 VGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPEVVEQAATRGAELILTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A +G+ V+V DHH A A+VNPN L GV F Sbjct: 137 DNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLRGCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPLDANNRILVYQGLNRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 257 AGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSIGVALLLSDDIAQAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 MLA LD LN RR +E M +A + + + WH G+VG+LA+R Sbjct: 317 MLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + +G GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + V DG L +++ ++L GP+G P Sbjct: 437 LEESKFDEFRQRFGDLVGEWLDPAMLEGVIWSDGELAMQELSLETAELLREGGPWGQAFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F ++ R+V HL++ E L IAF V T + S + + Sbjct: 497 EPTFDGT-FRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTTLWPD----SSVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG++ QL + P Sbjct: 552 LAYKLDVNEFRGNRNVQLLIQHLWP 576 >gi|228910245|ref|ZP_04074063.1| Exonuclease RecJ [Bacillus thuringiensis IBL 200] gi|228849409|gb|EEM94245.1| Exonuclease RecJ [Bacillus thuringiensis IBL 200] Length = 779 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|301055917|ref|YP_003794128.1| single-stranded-DNA-specific exonuclease [Bacillus anthracis CI] gi|300378086|gb|ADK06990.1| single-stranded-DNA-specific exonuclease [Bacillus cereus biovar anthracis str. CI] Length = 779 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|84393961|ref|ZP_00992701.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio splendidus 12B01] gi|84375405|gb|EAP92312.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio splendidus 12B01] Length = 578 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 178/568 (31%), Positives = 280/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ V+R + L + + L L D A + +AI ++I+I Sbjct: 18 HLPDLLKRIYVSRGIDSADQ---LETAAKGLHSY-QKLGGIDAAVELLFKAIQQQKRIII 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIELGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +++A QG+DV+V DHH +E A A+VNPN L GV F Sbjct: 134 DNGVSSIDGVRFAKEQGLDVLVTDHHLPGNELPIADAMVNPNLESCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ + L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A + S + + WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G GS RSI G + + G+++K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F R F + + DG L ++ + L S GP+G P Sbjct: 434 IMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAETLRSGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K +H+ L +N +RG++ QL V Sbjct: 549 KTVHLAFKLDINEFRGNQSLQLMVDHIE 576 >gi|330964090|gb|EGH64350.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. actinidiae str. M302091] Length = 569 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 179/562 (31%), Positives = 284/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RLKE Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L +AGP+G P P+ Sbjct: 432 ENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFSVDR----DIWPNPTIRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568 >gi|114048716|ref|YP_739266.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-7] gi|113890158|gb|ABI44209.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-7] Length = 574 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 169/565 (29%), Positives = 273/565 (48%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + + L +R P + + AA+ I A+ + I+I Sbjct: 19 HLPPLLRQLYARRGVMPNECELVLKGLLR-----PDTMKGLEPAAKLIADAMQQDKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L + IP+R GYG +P ++ ++ A+L+ITV Sbjct: 74 VGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH E A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPGCQFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR + +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ Q I + + WH G++G+LA+R Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G++ K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F + ++ T DG L + + + + +L +AGP+G Sbjct: 434 LKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPAELTLEIAQLLRNAGPWGQSFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+ S L AIAF V + +Q Sbjct: 494 EPLFDGY-FKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG+ QL V P Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573 >gi|206969586|ref|ZP_03230540.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH1134] gi|206735274|gb|EDZ52442.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH1134] Length = 779 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|47566598|ref|ZP_00237420.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus G9241] gi|47556628|gb|EAL14960.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus G9241] Length = 796 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 24 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 80 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 81 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 140 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 141 GPNEDAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 200 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 201 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 249 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 250 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 309 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 310 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 368 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 369 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 426 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 427 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 486 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 487 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 543 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 544 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 590 >gi|228967485|ref|ZP_04128513.1| Exonuclease RecJ [Bacillus thuringiensis serovar sotto str. T04001] gi|228792200|gb|EEM39774.1| Exonuclease RecJ [Bacillus thuringiensis serovar sotto str. T04001] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P L +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGLYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|229093480|ref|ZP_04224583.1| Exonuclease RecJ [Bacillus cereus Rock3-42] gi|228689951|gb|EEL43755.1| Exonuclease RecJ [Bacillus cereus Rock3-42] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|319651682|ref|ZP_08005809.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. 2_A_57_CT2] gi|317396749|gb|EFV77460.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus sp. 2_A_57_CT2] Length = 772 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 177/575 (30%), Positives = 291/575 (50%), Gaps = 25/575 (4%) Query: 31 LAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 ++++ I + A +L+NR + + + DP ++TD KA RI +AI Sbjct: 2 QQLSKELNISPLAASLLINRGMDTVDSARYFLLDKDQEFHDPCLMTDMAKAVSRIKEAIE 61 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 E I+IFGDYD DG S ++MM L + YIP+R +GYGPN E+ + G Sbjct: 62 KQEPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEQAADTGI 121 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 +LIITVD G ++ + + A G+D+I+ DHH+ E A+A+V+P D L Sbjct: 122 RLIITVDTGISAVNEAKAAKELGMDLIITDHHEPGHELPEAWAIVHPKHPDSRYPFRELA 181 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 GV F + +Y + LL++ A+ T+ D+V L G NR +G+ Sbjct: 182 GVGVAFKLAHALYGEMPD-----------HLLEIAAIGTIADLVSLTGENRLIAKRGIQK 230 Query: 271 ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 + N GLKAL + I I E +G+ IGP +NA GR+ ++ LL+++D E Sbjct: 231 LKSTKNTGLKALFKAAGIELPSINEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEA 290 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 + +A ++++LN+ R+ + + + QA +V + SVIVV + W+ G++G++A++ Sbjct: 291 QAIAEEIEMLNKERQAIVNDIAAQAVKEVEANFPISKN-SVIVVGKEGWNAGVIGIVASK 349 Query: 390 LKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448 L EKF RP+ +S++ + G GS RSI+GFD+ K +S IL GGH MAAG+T+ Sbjct: 350 LVEKFYRPAIVLSYDSDKGLAKGSARSIKGFDLFKNLSEC--RDILPHFGGHPMAAGMTL 407 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + L D A+ + PV IDGV + ++++ I+ ++ P+G GNP Sbjct: 408 SIESVDDLRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMQLLAPFGMGNPK 467 Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG-KRM 565 P + ++R + H+++T E+ D +L I F LG Q ++ Sbjct: 468 PKVMIKEANIAAMRKIGSDQTHIKVTIEN-DGSSLDGIGFG-----LGHLHEQISPYSKL 521 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V G L +N W K+ Q+ + D + F + Sbjct: 522 SVIGELSINEWNNIKKPQIFLQDMAVNSWQLFDIR 556 >gi|237800098|ref|ZP_04588559.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022954|gb|EGI03011.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. oryzae str. 1_6] Length = 571 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 286/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R VS + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYASRGVSCE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCNFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFDSYQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG++IGP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPARITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQNR+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVRLDELNQNRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RPS A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPSIAFASAGEGVLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 +F + F + + T DG L ++ L L + GP+G P Sbjct: 432 PEEHFPAFAEAFDQEVRRQLEEQDLTGRLLSDGSLAVEEFHLELARALRNGGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHLAP 570 >gi|196044795|ref|ZP_03112029.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus 03BB108] gi|225866390|ref|YP_002751768.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus 03BB102] gi|229186648|ref|ZP_04313809.1| Exonuclease RecJ [Bacillus cereus BGSC 6E1] gi|196024283|gb|EDX62956.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus 03BB108] gi|225785687|gb|ACO25904.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus 03BB102] gi|228596907|gb|EEK54566.1| Exonuclease RecJ [Bacillus cereus BGSC 6E1] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|218905604|ref|YP_002453438.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH820] gi|218535730|gb|ACK88128.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH820] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYS--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|52141097|ref|YP_085732.1| single-stranded-DNA-specific exonuclease [Bacillus cereus E33L] gi|51974566|gb|AAU16116.1| single-stranded-DNA-specific exonuclease [Bacillus cereus E33L] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|331009237|gb|EGH89293.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 571 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGGLLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DDS Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDSTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|229105047|ref|ZP_04235699.1| Exonuclease RecJ [Bacillus cereus Rock3-28] gi|228678357|gb|EEL32582.1| Exonuclease RecJ [Bacillus cereus Rock3-28] Length = 773 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 182/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E R + +K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNE--ERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A N +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKDISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|298488289|ref|ZP_07006321.1| Single-stranded-DNA-specific exonuclease recJ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157111|gb|EFH98199.1| Single-stranded-DNA-specific exonuclease recJ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 571 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLTRLIPY-QQLKGIDAAVDLLVTALQEGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E S IT+ +LG++IGP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARRESSRITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAAEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHGI-FQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|289625881|ref|ZP_06458835.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646221|ref|ZP_06477564.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. aesculi str. 2250] gi|330867539|gb|EGH02248.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 571 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLTRLIPY-QQLKGIDAAVDLLVTALQEGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E S IT+ +LG++IGP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARRESSRITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAAEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHGI-FQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHIAP 570 >gi|229175083|ref|ZP_04302600.1| Exonuclease RecJ [Bacillus cereus MM3] gi|228608379|gb|EEK65684.1| Exonuclease RecJ [Bacillus cereus MM3] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLKLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L N YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGANVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + +LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------NLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|229071917|ref|ZP_04205128.1| Exonuclease RecJ [Bacillus cereus F65185] gi|229081673|ref|ZP_04214168.1| Exonuclease RecJ [Bacillus cereus Rock4-2] gi|228701677|gb|EEL54168.1| Exonuclease RecJ [Bacillus cereus Rock4-2] gi|228711213|gb|EEL63177.1| Exonuclease RecJ [Bacillus cereus F65185] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|228954693|ref|ZP_04116716.1| Exonuclease RecJ [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805020|gb|EEM51616.1| Exonuclease RecJ [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|323493663|ref|ZP_08098784.1| ssDNA exonuclease RecJ [Vibrio brasiliensis LMG 20546] gi|323312186|gb|EGA65329.1| ssDNA exonuclease RecJ [Vibrio brasiliensis LMG 20546] Length = 578 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 175/568 (30%), Positives = 281/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +I ++ R+ ++R + L + R L L DKA + A+ +++I++ Sbjct: 18 SIAPLLKRIYISRGIRTIEQ---LETTARALHSY-QKLHGIDKAVELLFSALQTNKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA QG+ V+V DHH E A+VNPN + L GV F Sbjct: 134 DNGVSSIEGVRYAKQQGLQVLVTDHHLPGHELPDVDAMVNPNLQECAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R++ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKNGWFTQQGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A Q + +V+ WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGETDMPHGLVLFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEKF RP A + +G GS RSI G + ++ G+++K GGHAMAAGLT Sbjct: 374 IKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDVLDRIDTQNPGMIIKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ NF R F + + V DG L ++ + L + GP+G P Sbjct: 434 IKESNFERFSQLFDEAVKQDLDDAALKGVILSDGELAPEEFSMHTAETLRAGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLMIDHIE 576 >gi|229032059|ref|ZP_04188041.1| Exonuclease RecJ [Bacillus cereus AH1271] gi|228729251|gb|EEL80246.1| Exonuclease RecJ [Bacillus cereus AH1271] Length = 779 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNN--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-EKNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVAELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|188534905|ref|YP_001908702.1| ssDNA exonuclease RecJ [Erwinia tasmaniensis Et1/99] gi|188029947|emb|CAO97831.1| Single-stranded-DNA-specific exonuclease [Erwinia tasmaniensis Et1/99] Length = 572 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 193/560 (34%), Positives = 276/560 (49%), Gaps = 17/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ +R VS L + L P L+ ++A + +A+ ++ IMI Sbjct: 21 DLHPLLRRLYAHRGVS---CAGELERGAKNLHP-FQSLSGIERAVTLLQKALADNLCIMI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TV Sbjct: 77 VGDFDADGATSTALAVLSLRGMGGQNVKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A +GI VIV DHH A A+VNPN D L GV F Sbjct: 137 DNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLNDCTFPSRALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275 +++ + LR D +L LLDLVAL TV DVVPL NR V +GL R + Sbjct: 197 YLMLALRARLR-DGGANGLPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+S+D + MLA Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLGQARMLAS 315 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + I + WH G+VG+LA+RLKE+ Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESTSETLPLGIAMYHPEWHQGVVGILASRLKER 375 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + DG GSGRS+ G + + G++VK GGHAMAAGL++E Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSVTGLHMRDALERLDTLHPGLIVKFGGHAMAAGLSLEEA 435 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + A V DG L A + + ++L AGP+G P P F Sbjct: 436 RFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLREAGPWGQAFPEPTF 495 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 KL R+V HL+M E L IAF V + K++ + Sbjct: 496 DGR-FKLLQQRLVGERHLKMMIEPLGGGPLLDGIAFNVDTALWPD----PSVKQVELAYK 550 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL V Sbjct: 551 LDVNEFRGNRNVQLIVDHIW 570 >gi|167753847|ref|ZP_02425974.1| hypothetical protein ALIPUT_02132 [Alistipes putredinis DSM 17216] gi|167658472|gb|EDS02602.1| hypothetical protein ALIPUT_02132 [Alistipes putredinis DSM 17216] Length = 589 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 177/596 (29%), Positives = 279/596 (46%), Gaps = 34/596 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RWV Q A+ I ++A +LV R + + AK F NP + L DP + Sbjct: 5 KRWVVKP-QGNPEAVAAMAAATGISPVLANLLVQRGIDTLEKAKKFFNPQLSDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVD 133 + D DKA R+ +A+ N EKIM++GDYDVDG +VAL+ +FL + YIPDR + Sbjct: 63 MKDMDKAVERVERAVRNREKIMVYGDYDVDGTTAVALVYKFLRQIGHKDLLFYIPDRYTE 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ +GA LII +DCG + + + YA +G+D I+ DHH E A A Sbjct: 123 GYGISTKGIDHAARKGATLIIALDCGIKAIEKVDYAKRKGVDFIICDHHLPAEEIPRAVA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P R D L GV F ++ + + LLDL+A++ D+ Sbjct: 183 VLDPKRADCSYPFDELSGCGVGFKLVQAYCQKNGI-----PFQQIEPLLDLLAVSIASDI 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 VPL+ NR GL+ + GL ++I+ + IT +++ + IGP INA GR+ Sbjct: 238 VPLVDENRILAHYGLLRLNASPSKGLLSIIKICGLDRHNITIDDIVFKIGPRINAAGRMR 297 Query: 313 ESNL-----------GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 LLI + E +D NQ+R+ ++ ++ ++A + Sbjct: 298 MDENDENAAPSGGYAAVNLLIEGNESLAEEFGSVIDGFNQDRKCIDRSVTQEAHDFIEAH 357 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 +++ A V+ RW GIVG++A+RL E + RP+ ++ +G GS RS+ GFD+ Sbjct: 358 A-ELKAAKSTVIYNPRWMKGIVGIVASRLIETYYRPTVVLT-MSNGFVTGSARSVPGFDL 415 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + + +L GGH AAGLT+ F + + + P +ID Sbjct: 416 YQAIESC--SDLLENFGGHMYAAGLTMRPERVEEFTRRFNAYVEENIDPITLQPQVEIDS 473 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTF--ESQ 536 L S + A L P+G GNP PVF ++V HL+M + Sbjct: 474 ELFFSNITPAFRRDLNRFQPFGPGNPAPVFVTRGVVSHGETKLVGADCEHLRMDLMQRQK 533 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + T+Q IAF+ + G + V + N++RGS QLR+ D P+ Sbjct: 534 PNTTIQTIAFQQPT----HYEWIRAGHPIDVCYQIVENHYRGSVSVQLRIKDIKPL 585 >gi|118479566|ref|YP_896717.1| exonuclease RecJ [Bacillus thuringiensis str. Al Hakam] gi|118418791|gb|ABK87210.1| exonuclease RecJ [Bacillus thuringiensis str. Al Hakam] Length = 798 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 26 RWKEKEY--NGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 82 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 83 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 142 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 143 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 202 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 203 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 251 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 252 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 311 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 312 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 370 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 371 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 428 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 429 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 488 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 489 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 545 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 546 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 592 >gi|238787319|ref|ZP_04631118.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia frederiksenii ATCC 33641] gi|238724581|gb|EEQ16222.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia frederiksenii ATCC 33641] Length = 577 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 278/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKNAEE---LERGVKGLLA-WQQLDGIDAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN + L GV F Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPVAEAIINPNLVGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR L +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRDCGWFELRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N +TA +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLTASDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTCTELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG L + +++ ++L GP+G P Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPMNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576 >gi|28868695|ref|NP_791314.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato str. DC3000] gi|28851934|gb|AAO55009.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato str. DC3000] Length = 569 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 178/562 (31%), Positives = 283/562 (50%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 D+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VCDFDADGATACTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRDTGWFDQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTRAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RLKE Sbjct: 313 AVQLDELNQDRKSIEQGMQREALAQLKDLPMESMPFGLCLFDAE-WHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAAGHPHLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L +AGP+G P P+ Sbjct: 432 DNFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKMVLKTECGSVRLDGIAFSVDR----DIWPNPNIRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 KLDLNEFRGNETVQLMVVHIAP 568 >gi|146291996|ref|YP_001182420.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella putrefaciens CN-32] gi|145563686|gb|ABP74621.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella putrefaciens CN-32] Length = 584 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + L +R P + +AA I A+ ++ I+I Sbjct: 29 HLPPLLKQLYARRGVMPHECELALQGLLR-----PETMKGLVEAAAIIADAMQANKSILI 83 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+L+ITV Sbjct: 84 VGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 143 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ VI+ DHH E A A+VNPN+ + GV F Sbjct: 144 DNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADAIVNPNQPGCPFASKSIAGVGVAF 203 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 204 YLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 263 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 264 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 323 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 324 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQEDWHQGVIGILASR 383 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 384 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 443 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + + + T DG L + +N+ + +L +AGP+G Sbjct: 444 LKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELTPTELNLEIAQLLRNAGPWGQAFE 503 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+Q L AIAF V + + Sbjct: 504 EPLFDGY-FKIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATINHA----R 558 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 559 IVYKLDVNEYRGNFSLQLMVEQIE 582 >gi|229123950|ref|ZP_04253142.1| Exonuclease RecJ [Bacillus cereus 95/8201] gi|228659252|gb|EEL14900.1| Exonuclease RecJ [Bacillus cereus 95/8201] Length = 779 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAGEIDELNKLRKDIVKQITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|332829388|gb|EGK02042.1| single-stranded-DNA-specific exonuclease RecJ [Dysgonomonas gadei ATCC BAA-286] Length = 578 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 169/581 (29%), Positives = 289/581 (49%), Gaps = 21/581 (3%) Query: 16 FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 ++W L + + + +K I ++ ++L+ R +S + A F +P+++ L DP Sbjct: 3 YKWNYEALTTQQKEQRDDLAKKLGISPVLCQLLIQRGISSSEDAYKFFHPNLKDLH-DPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D DKA +RI +A+ ++I+I+GDYDVDG +VAL+ +FL + N + YIPDR + Sbjct: 62 LLPDMDKAIKRIEKALGQKQRILIYGDYDVDGTTAVALVYKFLRKFTTNLDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA ++GID I+ DHH A A Sbjct: 122 GYGISEQGIDYAEETGVKLIIALDCGIKAIEKVAYAKSKGIDFIIGDHHMPDEILPDAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++ R+D HL GV F ++ + + + D +L LLDLVA++ D+ Sbjct: 182 VIDAKRIDSTYPYEHLSGCGVGFKLVQALAQNNKID-----FSELTDLLDLVAVSVASDI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 VP+ G NR GL + GLK +IE ++ IT ++ + IGP INA GR+ Sbjct: 237 VPITGENRVLTYFGLKQINSNPSLGLKGIIEICGLTYKGITVNDIIFKIGPRINASGRMM 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL+++ ++ + +D N +RR ++ + ++A + D+ + +V Sbjct: 297 KGKEAVDLLLANTIEDAREKSANIDHYNDDRRELDKRITDEAIQFIDG-TVDMSKKKSLV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WH G++G++A+RL EK+ RP+ ++ + G GS RS+ GFD+ K + + Sbjct: 356 IYDETWHKGVIGIVASRLTEKYLRPAVVLT-KSQGLITGSARSVMGFDVYKAIEAC--KD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL GGH AAGL+++ N F+ + ++ + P ID L+ + Sbjct: 413 ILENFGGHTYAAGLSLKEENLAEFQRRFEALSLEMIAPEMMRPQICIDAELSFKEITPKF 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLAHLQMTFESQDSET---LQAIAFRV 548 I L P+G N NP+F + + + + V ++ + E D T + IAFR Sbjct: 473 ISDLAGFAPFGPENLNPIFVTWDVQDYGTSKPVGKDNVHLKLEMIDKTTTIPVNGIAFRQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 M G+ + L N G QL V D Sbjct: 533 SANS----EMVKNGRPFDICYTLEENTHNGKTNIQLYVKDI 569 >gi|269103440|ref|ZP_06156137.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium damselae subsp. damselae CIP 102761] gi|268163338|gb|EEZ41834.1| single-stranded-DNA-specific exonuclease RecJ [Photobacterium damselae subsp. damselae CIP 102761] Length = 574 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 178/563 (31%), Positives = 276/563 (49%), Gaps = 20/563 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP + R+ +R ++ D L + L+ L +A + QA+ N+++I+I Sbjct: 19 IPARLKRIYASRGITHD---GELERGAKGLLSY-NQLHGMAQAVDLLEQALRNNQRIIIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 D+D DGA S AL + N + +P+R DGYG +P ++++ + +G ++I+TVD Sbjct: 75 SDFDADGATSSALSVLAFKMLGCQNVDYLVPNRFDDGYGLSPEVVDQALAKGVEVIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + YA +G+ V+V DHH A A+VNPN + LC GV F Sbjct: 135 NGVSSLSGVAYAKEKGLTVVVTDHHLPGDILPNADAIVNPNLNECGFPSKALCGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR + +L LLDLVAL TV DVV L G NR V +GL R Sbjct: 195 LMLALRAQLRATDWFTQQNIPEPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRA 254 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++ALIE N I +LG+ +GP INA GR+ + G LL+ D+ Q Sbjct: 255 GRCRPGIQALIEVANRDPQKIVTSDLGFALGPRINAAGRLDDMAFGVELLLCDNIQSARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAARL 390 +A +LD LNQ R+ +E M E+A A +V WH G++G+LA+R+ Sbjct: 315 MATELDGLNQTRKEIEQGMKEEALAICERLKFSANDMPYGLVLFQKDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEKF RP + + + GS RSI G + ++ G++ K GGHAMAAGLT+ Sbjct: 375 KEKFHRPVICFADAGNEQIKGSCRSIPGLHMRDVLDLIDTQNPGMIAKFGGHAMAAGLTI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + F + N + V DG L A+ N+ +ML + GP+G P Sbjct: 435 DTKQLDAFSRAFDQAVRNELGEDELKGVLLTDGELEANEFNLDTAEMLRAGGPWGQQFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L ++V HL+M E + AIAF V + + +++ + Sbjct: 495 PTFDGT-FRLLHQKLVGGKHLKMMVEPLHGGSVIDAIAFNVDLKRWPD----ASVQQVEL 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L +N +RG++ QL + + Sbjct: 550 VYRLDINEFRGNRSVQLMIEHLA 572 >gi|228923161|ref|ZP_04086452.1| Exonuclease RecJ [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836540|gb|EEM81890.1| Exonuclease RecJ [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 779 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|196034344|ref|ZP_03101753.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus W] gi|228948123|ref|ZP_04110407.1| Exonuclease RecJ [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992886|gb|EDX56845.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus W] gi|228811481|gb|EEM57818.1| Exonuclease RecJ [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 779 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYVALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEV-ENNFPPEDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITTVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|22127150|ref|NP_670573.1| ssDNA exonuclease RecJ [Yersinia pestis KIM 10] gi|45443321|ref|NP_994860.1| ssDNA exonuclease RecJ [Yersinia pestis biovar Microtus str. 91001] gi|51597476|ref|YP_071667.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis IP 32953] gi|108806376|ref|YP_650292.1| ssDNA exonuclease RecJ [Yersinia pestis Antiqua] gi|108813249|ref|YP_649016.1| ssDNA exonuclease RecJ [Yersinia pestis Nepal516] gi|145597932|ref|YP_001162008.1| ssDNA exonuclease RecJ [Yersinia pestis Pestoides F] gi|150260099|ref|ZP_01916827.1| single-stranded-DNA-specific exonuclease [Yersinia pestis CA88-4125] gi|153947712|ref|YP_001399865.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis IP 31758] gi|162421398|ref|YP_001608156.1| ssDNA exonuclease RecJ [Yersinia pestis Angola] gi|165925149|ref|ZP_02220981.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165937313|ref|ZP_02225877.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Orientalis str. IP275] gi|166010309|ref|ZP_02231207.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166212665|ref|ZP_02238700.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Antiqua str. B42003004] gi|167400018|ref|ZP_02305536.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418963|ref|ZP_02310716.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425248|ref|ZP_02317001.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470507|ref|ZP_02335211.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis FV-1] gi|218928063|ref|YP_002345938.1| ssDNA exonuclease RecJ [Yersinia pestis CO92] gi|229837576|ref|ZP_04457738.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Pestoides A] gi|229840799|ref|ZP_04460958.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842642|ref|ZP_04462797.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar Orientalis str. India 195] gi|229903705|ref|ZP_04518818.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Nepal516] gi|270487484|ref|ZP_06204558.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis KIM D27] gi|294502943|ref|YP_003567005.1| single-stranded-DNA-specific exonuclease [Yersinia pestis Z176003] gi|21960211|gb|AAM86824.1|AE013928_9 ssDNA exonuclease [Yersinia pestis KIM 10] gi|45438190|gb|AAS63737.1| single-stranded-DNA-specific exonuclease [Yersinia pestis biovar Microtus str. 91001] gi|51590758|emb|CAH22403.1| Single-stranded-DNA-specific exonuclease [Yersinia pseudotuberculosis IP 32953] gi|108776897|gb|ABG19416.1| exonuclease RecJ [Yersinia pestis Nepal516] gi|108778289|gb|ABG12347.1| exonuclease RecJ [Yersinia pestis Antiqua] gi|115346674|emb|CAL19557.1| single-stranded-DNA-specific exonuclease [Yersinia pestis CO92] gi|145209628|gb|ABP39035.1| exonuclease RecJ [Yersinia pestis Pestoides F] gi|149289507|gb|EDM39584.1| single-stranded-DNA-specific exonuclease [Yersinia pestis CA88-4125] gi|152959207|gb|ABS46668.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pseudotuberculosis IP 31758] gi|162354213|gb|ABX88161.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis Angola] gi|165914787|gb|EDR33400.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Orientalis str. IP275] gi|165923349|gb|EDR40500.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165990795|gb|EDR43096.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166205957|gb|EDR50437.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Antiqua str. B42003004] gi|166962957|gb|EDR58978.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050726|gb|EDR62134.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055648|gb|EDR65432.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679475|gb|EEO75578.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Nepal516] gi|229690952|gb|EEO83006.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar Orientalis str. India 195] gi|229697165|gb|EEO87212.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704264|gb|EEO91275.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis Pestoides A] gi|262360978|gb|ACY57699.1| single-stranded-DNA-specific exonuclease [Yersinia pestis D106004] gi|262364918|gb|ACY61475.1| single-stranded-DNA-specific exonuclease [Yersinia pestis D182038] gi|270335988|gb|EFA46765.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pestis KIM D27] gi|294353402|gb|ADE63743.1| single-stranded-DNA-specific exonuclease [Yersinia pestis Z176003] gi|320014034|gb|ADV97605.1| ssDNA exonuclease, 5' --> 3'-specific [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 577 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 182/564 (32%), Positives = 277/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 22 LPPLLRRLYASRGVKDAQE---LERGVKGLLA-WQKLDGIDAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDTLNQTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + A V DG LN + +++ ++L GP+G P Sbjct: 438 EEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF V T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576 >gi|120600075|ref|YP_964649.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. W3-18-1] gi|120560168|gb|ABM26095.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. W3-18-1] Length = 584 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + L +R P + +AA I A+ ++ I+I Sbjct: 29 HLPPLLKQLYARRGVMPHECELALQGLLR-----PETMKGLVEAAAIIADAMQANKSILI 83 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+L+ITV Sbjct: 84 VGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 143 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ VI+ DHH E A A+VNPN+ + GV F Sbjct: 144 DNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADAIVNPNQPGCPFASKSIAGVGVAF 203 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 204 YLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 263 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 264 AGRCRVGITALLEVAKRNPARILASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 323 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 324 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQEDWHQGVIGILASR 383 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 384 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 443 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + + + T DG L + +N+ + +L +AGP+G Sbjct: 444 LKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELTPTELNLEIAQLLRNAGPWGQAFE 503 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+Q L AIAF V + + Sbjct: 504 EPLFDGY-FKIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATINHA----R 558 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 559 IVYKLDVNEYRGNFSLQLMVEQIE 582 >gi|123443574|ref|YP_001007547.1| ssDNA exonuclease RecJ [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090535|emb|CAL13404.1| single-stranded-DNA-specific exonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 577 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 274/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L + + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIEAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMFHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG L + +++ ++L GP+G P Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576 >gi|229192620|ref|ZP_04319581.1| Exonuclease RecJ [Bacillus cereus ATCC 10876] gi|228590927|gb|EEK48785.1| Exonuclease RecJ [Bacillus cereus ATCC 10876] Length = 779 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEVAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|251792901|ref|YP_003007627.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter aphrophilus NJ8700] gi|247534294|gb|ACS97540.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter aphrophilus NJ8700] Length = 573 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 168/562 (29%), Positives = 282/562 (50%), Gaps = 18/562 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ +R++ L+ ++ + +P +++ D A +++A +KI+I G Sbjct: 19 DPLLDRLYRSRHIKNA---CQLDRTLAAIH-NPNLMSGLDDAVALLLEAYEKQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L VN +P+R GYG + ++ ++ + +L+ITVD Sbjct: 75 DFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +G++VIV DHH A A++NPN +L GV F + Sbjct: 135 GVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAHCGFPSKNLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + R+ + LLDLVAL TV DVVPL NR V +GL + ++ Sbjct: 195 MLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++AL E + +A +LG+ I P +NA GR+ ++G LL+++D + LA+ Sbjct: 255 RFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMENARALAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + Q IV+ WH G++G++A+R+K++ Sbjct: 315 ELDSLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERV 451 F RP A + E+DG GS RSI G I + + ++K GGHAMAAGL++ Sbjct: 375 FHRPVIAFAQEQDGILKGSARSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINEN 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + ++ DG L+ + +N+ + L+SAGP+G P P+F Sbjct: 435 YFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R+V HL+M ES+ + AIAF V + + K + Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSI----KTAKLVYK 549 Query: 571 LCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL + P+ Sbjct: 550 LDINEFRGNRDIQLLIDYIEPL 571 >gi|271499212|ref|YP_003332237.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii Ech586] gi|270342767|gb|ACZ75532.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii Ech586] Length = 576 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 184/566 (32%), Positives = 279/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++P ++ R+ R V L S+R L+ D +L+ +A + +A+ +I+I Sbjct: 20 SLPALLRRLYAQRGVRQAQE---LERSLRGLL-DYRLLSGIAQAVDVLCRALAEERRIVI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R DGYG +P ++ + +GA+LI+TV Sbjct: 76 VGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A +GI+V+V DHH A A+VNPN +D L GV F Sbjct: 136 DNGISSHAGVDDAHRRGIEVVVTDHHLPGDTLPAAEAMVNPNLVDCAFPSKALAGVGVAF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 YLMMALRARLRESGWFTERGLAEPNLAELLDLVALGTVADVVPLDVNNRILVAQGLSRIR 255 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ D + Sbjct: 256 AGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCHDIVQAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 MLA LD LNQ+RR +E+ M +A + + WH G+VG+LA+R Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALQLCEQLERSRDTLPLGLAMYHPDWHQGVVGILASR 375 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLS 435 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F F + A V DG L +++ +ML AGP+G P Sbjct: 436 LAEERFDEFRQRFADLVGEWLDASQLEGVVWSDGELAVPELSLGTAEMLREAGPWGQAFP 495 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + S + + Sbjct: 496 EPLFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTVLWPD----SSVREVE 550 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L VN +RG + QL + P+ Sbjct: 551 LAYKLDVNEFRGKRSVQLLIEHLWPL 576 >gi|113969141|ref|YP_732934.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-4] gi|113883825|gb|ABI37877.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. MR-4] Length = 574 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 169/565 (29%), Positives = 274/565 (48%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + + L +R P + ++AA+ I A+ + I+I Sbjct: 19 HLPPLLRQLYARRGVMPNECELVLKGLLR-----PDTMKGLEQAAKLIADAMQQDKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L + IP+R GYG +P ++ ++ A+L+ITV Sbjct: 74 VGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH E A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPGCQFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR + +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ Q I + + WH G++G+LA+R Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G++ K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F + ++ T DG L + + + + +L +AGP+G Sbjct: 434 LKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+ S L AIAF V + +Q Sbjct: 494 EPLFDGY-FKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHAC---- 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG+ QL V P Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573 >gi|229163357|ref|ZP_04291309.1| Exonuclease RecJ [Bacillus cereus R309803] gi|228620138|gb|EEK77012.1| Exonuclease RecJ [Bacillus cereus R309803] Length = 779 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 178/589 (30%), Positives = 280/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNN--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVAELRRRLNEQAEVILTEADFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|228941577|ref|ZP_04104125.1| Exonuclease RecJ [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974506|ref|ZP_04135073.1| Exonuclease RecJ [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981100|ref|ZP_04141401.1| Exonuclease RecJ [Bacillus thuringiensis Bt407] gi|228778641|gb|EEM26907.1| Exonuclease RecJ [Bacillus thuringiensis Bt407] gi|228785223|gb|EEM33235.1| Exonuclease RecJ [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818084|gb|EEM64161.1| Exonuclease RecJ [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942190|gb|AEA18086.1| single-stranded-DNA-specific exonuclease recJ [Bacillus thuringiensis serovar chinensis CT-43] Length = 779 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 278/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|212710037|ref|ZP_03318165.1| hypothetical protein PROVALCAL_01090 [Providencia alcalifaciens DSM 30120] gi|212687244|gb|EEB46772.1| hypothetical protein PROVALCAL_01090 [Providencia alcalifaciens DSM 30120] Length = 577 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 182/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP+++ R+ +R ++ L L+ D L+ + A + A+ +KI I Sbjct: 21 NIPELLQRIYASRGITD---IAQLERKASNLL-DYRSLSGVENALTLLYVALVEHQKITI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL +R L VN N +P+R +GYG P ++++ +G LIITV Sbjct: 77 VGDFDADGATSTALAIRALKAMGYVNLNYIVPNRFENGYGLTPLVVDEAYKQGTDLIITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+D + A G+ VI+ DHH A A++NPN D L GV F Sbjct: 137 DNGISSHDGVDAAHQYGMKVIITDHHLPGEILPTADAIINPNLSDCQFASKSLAGVGVTF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ +L LDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMSALRAHLRQQQWFEKQGISEPNLAEYLDLVALGTVADVVPLDTNNRILVHQGLNRVR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+KALIE S + A + G+ +GP +NA GR+ + ++ LL++DD Sbjct: 257 AGRCCAGIKALIEVSKRDASRLVANDFGFALGPRLNAAGRLDDMSVSIELLLTDDMAHAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA +LD LNQ RR +E+ M ++A + D Q + + + WH G+VG+LA+R Sbjct: 317 ELANELDGLNQTRREIEAGMQQEALVLFNKIEYSDNQLPNGLALYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRS++G + + + G++ K GGHAMAAGL+ Sbjct: 377 IKEQFHRPVIAFAPAGDGLLKGSGRSVQGVHMRDALERLNTLQPGLMQKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F+ ++ + + V DG L + +++ ++L +GP+G P Sbjct: 437 LEESKFDAFKYHFETLMGELIQPELLSGVIWSDGELLRNQLSLETAELLRESGPWGQAFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 PVF + +L ++V HL++ E L I F + + + K+ Sbjct: 497 EPVFDG-HFQLLQQKLVGEKHLKLMLEPVNGGPMLDGIMFNIDVRRWPD----NSVKKAK 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG+K QL + P Sbjct: 552 IAFKLDVNEFRGNKNVQLMIEHIWP 576 >gi|218899578|ref|YP_002447989.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus G9842] gi|218544747|gb|ACK97141.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus G9842] Length = 779 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ + P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGIGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|228902937|ref|ZP_04067078.1| Exonuclease RecJ [Bacillus thuringiensis IBL 4222] gi|228856721|gb|EEN01240.1| Exonuclease RecJ [Bacillus thuringiensis IBL 4222] Length = 779 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 278/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P L +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLEGGLYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|294794005|ref|ZP_06759142.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. 3_1_44] gi|294455575|gb|EFG23947.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. 3_1_44] Length = 660 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 189/589 (32%), Positives = 297/589 (50%), Gaps = 24/589 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 I RW G + + ++ + IVA+++VNR++ +D + FL ++ L+ DP Sbjct: 2 IKKKRWRLCKGDQEKENI--LIRELGVNPIVAKLMVNRHIDVDEGRQFLQGTLSDLL-DP 58 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D A +++ I + + I+I+GDYDVDG + +++ RFL + YIP+R Sbjct: 59 FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N +E I G L+ITVDCG +SYD ++ ++ ID+I+ DHH A Sbjct: 119 EGYGLNLEALEHLIERGTALVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDMIPRAK 177 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N + D +L GV F + ++ R + L LD+VAL TV D Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALWLTKRGE-------WYLDDLDIVALGTVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR V GL R+ N G+K LI+ IT+ ++G+ + P +NA GR+ Sbjct: 231 VVPLVGENRIIVKSGLDKMNREPNLGIKKLIDVAGLHERTITSGHIGFTLAPRLNAAGRV 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL++DD +E +A +L+ N+ R+ +E + E A V Q V Sbjct: 291 THATRAVELLVTDDEDIVEAIADELNETNRERQELERNIHELARVDVANQGHKA--DYVT 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 +V G+ WHPG++G++A+RL E+F +P+ IS + G G GS RSI+GF+I + E Sbjct: 349 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 IL++ GGHA AAG +++ L + K+ ++ PV ID L +++ Sbjct: 406 DILLQFGGHAAAAGFSIDANRIDELRERLTKYCKAVITEEEYIPVVAIDAELPVDDIDVD 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +ID + PYG N PVFA +Q I ++ H ++ FE+ TL AIA+ Sbjct: 466 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKIIFETSSG-TLDAIAWNRP 524 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 F G + V L N W+G QL + P+ Sbjct: 525 DL----FKSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPLTEEPIK 569 >gi|310766539|gb|ADP11489.1| ssDNA exonuclease RecJ [Erwinia sp. Ejp617] Length = 572 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 193/560 (34%), Positives = 278/560 (49%), Gaps = 17/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ +R VS L + L P L+ +KA + A+ +++ IMI Sbjct: 21 DLNPLLRRLYAHRGVS---CASELERGAKNLHP-FQSLSGIEKAVTLLQHALADNQCIMI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TV Sbjct: 77 VGDFDADGATSTALAVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A +GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSLAGVALAHQKGIAVVVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275 +++ + LR D V +L LLDLVAL TV DVVPL NR V +GL R + Sbjct: 197 YLMLALRARLR-DGGVNGLPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+S+D + MLA Sbjct: 256 RPGIRALLEVANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLGQARMLAS 315 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + I + WH G+VG+LA+RLKE+ Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESTSEALPLGIAMYHPEWHQGVVGILASRLKER 375 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + DG GSGRSI G + ++ G++VK GGHAMAAGL++E Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSITGLHMRDVLERLDTLHPGLIVKFGGHAMAAGLSLEEA 435 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + A V DG L A + + ++L AGP+G P P F Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLREAGPWGQAFPEPTF 495 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 KL R+V HL++ E L IAF V + K++ + Sbjct: 496 DGK-FKLLQQRLVGERHLKVMIEPLGGGTLLDGIAFNVDTALWPD----PSVKQVELAYR 550 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL + Sbjct: 551 LDVNEFRGTRSVQLIIDHLW 570 >gi|117921767|ref|YP_870959.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. ANA-3] gi|117614099|gb|ABK49553.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sp. ANA-3] Length = 574 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 169/565 (29%), Positives = 273/565 (48%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + + L +R P + + AA+ I A+ + I+I Sbjct: 19 HLPPLLRQLYARRGVMPNECELVLKGLLR-----PDTMKGLELAAKLIADAMQQEKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L + IP+R GYG +P ++ ++ A+L+ITV Sbjct: 74 VGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH E A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKAFGMQVVITDHHLPGHELPDADAIVNPNQPGCQFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR + +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLARVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 SGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ Q I + + WH G++G+LA+R Sbjct: 314 RMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G++ K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F + ++ T DG L + + + + +L +AGP+G Sbjct: 434 LKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+ S L AIAF V + +Q Sbjct: 494 EPLFDGY-FKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG+ QL V P Sbjct: 549 IVYKLDVNEYRGNFTLQLMVEQIEP 573 >gi|75760572|ref|ZP_00740605.1| Single-stranded-DNA-specific exonuclease recJ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491941|gb|EAO55124.1| Single-stranded-DNA-specific exonuclease recJ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 796 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 278/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 24 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 80 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 81 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 140 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 141 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 200 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P L +L GV F V + + + LL++ + TV D+V Sbjct: 201 HPKLEGGLYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 249 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 250 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 309 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 310 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 368 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + GS RSI GFD+ + + + Sbjct: 369 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPIKETAKGSARSIAGFDL--FANLSDCREL 426 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 427 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 486 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 487 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 543 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 544 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 590 >gi|282850511|ref|ZP_06259890.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula ATCC 17745] gi|282580004|gb|EFB85408.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula ATCC 17745] Length = 660 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 188/589 (31%), Positives = 295/589 (50%), Gaps = 24/589 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 I RW G + + ++ + IVA+++VNR++ +D + FL ++ L+ DP Sbjct: 2 IKKKRWRLCKGDQEKENI--LIRELGVNPIVAKLMVNRHIDVDEGRQFLQGTLSDLL-DP 58 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D A +++ I + + I+I+GDYDVDG + +++ RFL + YIP+R Sbjct: 59 FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N +E I G L+ITVDCG +SYD ++ ++ ID+I+ DHH A Sbjct: 119 EGYGLNLEALEHLIERGTALVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDMIPRAK 177 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N + D +L GV F + ++ L LD+VAL TV D Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR V GL R+ N G+K LI IT+ ++G+ + P +NA GR+ Sbjct: 231 VVPLVGENRIIVKSGLEKMNREPNLGIKKLIGVAGLHERTITSGHIGFTLAPRLNAAGRV 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL++DD +E +A +L+ N+ R+ +E + E A V Q V Sbjct: 291 THATRAVELLVTDDEDIVEAIADELNETNRERQELERNIHELARVDVANQGHKA--DYVT 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 +V G+ WHPG++G++A+RL E+F +P+ IS + G G GS RSI+GF+I + E Sbjct: 349 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GIGKGSCRSIDGFNIYDALKSC--E 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 IL++ GGHA AAG +++ L + K+ ++ PV ID L +++ Sbjct: 406 DILLQFGGHAAAAGFSIDANRIDELRERLTKYCKAVITDEEYIPVVAIDAELPVDDIDVD 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +ID + PYG N PVFA +Q I ++ H ++ FE+ + TL AIA+ Sbjct: 466 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKIIFETSNG-TLDAIAWNRP 524 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 F G + V L N W+G QL + P+ Sbjct: 525 DL----FKSIFVGTVVKVAFSLQKNEWQGMVSPQLMIQAIEPLTEEPIK 569 >gi|251798362|ref|YP_003013093.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. JDR-2] gi|247545988|gb|ACT03007.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. JDR-2] Length = 677 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 172/601 (28%), Positives = 282/601 (46%), Gaps = 37/601 (6%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW +E +A ++ + IP +VA++LV R + A+ FL L DP + Sbjct: 7 RWNLAPWNKEDEQQAEQLSAQLGIPPLVAKLLVQRGYKDKEAAETFLRGGEDRLH-DPYL 65 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +A RI QA N E I I+GDYD DG +S +L++ + YIP R +G Sbjct: 66 LIGMTEAVARIRQAADNGEFIRIYGDYDADGVSSTSLLIHVFRELGYTFDYYIPHRASEG 125 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ +G +LI+TVD G ++Y+ ++YA + GID++V DHH+ A A+ Sbjct: 126 YGLNTGAIDIAAADGVRLIVTVDTGISAYEQVEYAKSLGIDIVVTDHHEPPERIPDAVAV 185 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R D L GV F + + + D+V+L T+ D++ Sbjct: 186 VNPKREDCPYPFKGLAGVGVAFKLATALMGRAP-----------MEWTDIVSLGTIADIM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL NR V GL + N G +AL E I +T+ + + + P INA GR+ Sbjct: 235 PLTDENRVLVRAGLARLQNTDNTGFRALSEACGIELDQVTSTTVAFGMAPRINAAGRLDH 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-----IQQA 368 + LL + D E A LDVLN+ R+ + ++++AE + + D + Sbjct: 295 AKRAVELLTTGDYDEAIRAASSLDVLNKERQRIVDGIVKEAELQWQGKRDAARAAGRPEP 354 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427 +VIV+ G+ W+ G++G++A+++ E++ +P + + G GS RSIEG+D+ ++ Sbjct: 355 AVIVLAGEGWNVGVIGIVASKILERYYKPVIVLGIDPDSGMCKGSARSIEGYDLHAALTE 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 E +L GGH AAG+++ R + + A + P ID V + Sbjct: 415 CDE--LLDHYGGHQAAAGMSLRRDQLPAFEEKLGELAMEWLTEQDWIPKTAIDLVCSVGD 472 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545 ++ I L P+GAGNP+P + +L R + HL+++ S +L A+ Sbjct: 473 ASVHTIGQLALLEPFGAGNPSPRLLLQSAELSDYRTMGKDARHLKLSLRS-GRTSLDAVG 531 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA-------SPVEGHHFA 598 F + G + + G L +N W G ++ QL + D E HF Sbjct: 532 FGLGELSN----QLQSGLPVDLVGELSINEWNGQRKAQLHIHDLYFGGALARFPEREHFG 587 Query: 599 K 599 + Sbjct: 588 Q 588 >gi|304413172|ref|ZP_07394645.1| single-stranded DNA-specific exonuclease [Candidatus Regiella insecticola LSR1] gi|304284015|gb|EFL92408.1| single-stranded DNA-specific exonuclease [Candidatus Regiella insecticola LSR1] Length = 576 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 174/563 (30%), Positives = 273/563 (48%), Gaps = 20/563 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ ++R V L ++ L+ L D A + Q + + I+I GD Sbjct: 23 PLLRRLYISRGVKETQE---LERGVKGLLL-WQQLAGIDTAVDLLQQTMETGQCIVIVGD 78 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L + +P+R +GYG +P ++E+ + A LI+TVD G Sbjct: 79 FDADGATSTALAVLALRSMGAKDVKYLVPNRFEEGYGLSPMIVERVARQNAALIVTVDNG 138 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S+ ++ A +GI V+V DHH A A++NPN L GV F ++ Sbjct: 139 ISSHAGVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLM 198 Query: 220 VLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQ 274 + + L+ + +L LLDLVAL TV DVVPL NR V +GL + ++ Sbjct: 199 LALRARLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILVHQGLSRIRAKR 258 Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG++AL++ + A +LG+ +GP +NA GR+ + ++G LL+SDD +LA Sbjct: 259 CRPGIQALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILA 318 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 +L+ LNQ RR +E M +A A + D I + +WH G+VG+LA+R+KE Sbjct: 319 EELNTLNQERREIEQGMQLEALALCNALEDPDHILPYGIAMYHKKWHQGVVGILASRIKE 378 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP A + DG GSGRSI G + ++ G++ K GGHAMAAGL + Sbjct: 379 RFHRPVIAFAPAGDGMLKGSGRSIMGLHLRDVLEQLNTQNPGLISKFGGHAMAAGLMLAE 438 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 F F + A V DG L+ ++ ++L AGP+G P P+ Sbjct: 439 NKFEEFRQRFADLVAECLDASQLEGVIWSDGELSIDELSQETAELLREAGPWGQAFPEPI 498 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F ++ R+V HL++ +S L IAF + S ++ Sbjct: 499 FDGQ-FRILQQRLVGEQHLKLILQSVLGGPLLDGIAFNIDTKLWP----NSTTVAANLAY 553 Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592 L +N ++G ++ QL V PV Sbjct: 554 KLDINEFKGRRKLQLLVQQLWPV 576 >gi|326793994|ref|YP_004311814.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas mediterranea MMB-1] gi|326544758|gb|ADZ89978.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas mediterranea MMB-1] Length = 573 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 168/565 (29%), Positives = 256/565 (45%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P + RVL R V+ D+ + L+ P D KAA+ + AI + +KI+I Sbjct: 19 NLPFTLQRVLSCRGVTSAEEIDY---RLPHLLH-PKRFFDIQKAAKILADAIEHGKKILI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S L + + +P+R GYG P ++ +++TV Sbjct: 75 VGDFDADGATSTTLGILAMEAMGAIEPEYLVPNRFEYGYGLTPEIVAVACESKPDVLVTV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S D + A G+ VIV DHH A A+VNPN + L GV+F Sbjct: 135 DNGIASIDGVLAAKAAGMQVIVTDHHLPGDALPDADAIVNPNHPECEFESKSLAGVGVIF 194 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V+ + L + LDLVAL TV DVVPL NR V +G+ + Sbjct: 195 YVMSALRAELTARRWFEEQHIRPPKMADYLDLVALGTVADVVPLDANNRILVQQGIQRIQ 254 Query: 273 RQG-NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG+ ALIE + A +LG+++GP +NA GR+ + ++G L++ S Sbjct: 255 SGHARPGILALIELGGRDIARLKASDLGFVVGPRLNAAGRLDDMSIGIECLLATHSHVAR 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 A +LD LN+ R+ +ES M +QAE ++ + + + + WH G++G+LA+R+ Sbjct: 315 EYAQQLDQLNRERKTIESEMKQQAERELDKLTLNEDLPNGLCFYEESWHQGVIGILASRM 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEK RP A + +DG GS RSI G I + +L K GGHAMAAG+++ Sbjct: 375 KEKCYRPVIAFAQADDGMLKGSARSIPGVHIRDALDLLAKRHPNLLSKFGGHAMAAGMSI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + ++ F + V V DG L + ++ + + GP+G P Sbjct: 435 KESDYDAFTRAFDEIITEWVTPEQLEAVIYTDGELASEDFSLGFAEQVRLLGPWGQAFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L R+V HL++T + + L AI F S + Sbjct: 495 PCFDG-VFELIQQRIVGEKHLKLTVKEPRSGILLDAIHFFADLKTWP-----SEHDTARL 548 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG + QL V P Sbjct: 549 VFKLDINEFRGQRNLQLMVDHIEPS 573 >gi|228960682|ref|ZP_04122326.1| Exonuclease RecJ [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048118|ref|ZP_04193689.1| Exonuclease RecJ [Bacillus cereus AH676] gi|229111881|ref|ZP_04241427.1| Exonuclease RecJ [Bacillus cereus Rock1-15] gi|229129689|ref|ZP_04258657.1| Exonuclease RecJ [Bacillus cereus BDRD-Cer4] gi|229146980|ref|ZP_04275342.1| Exonuclease RecJ [Bacillus cereus BDRD-ST24] gi|296504901|ref|YP_003666601.1| single-stranded-DNA-specific exonuclease recJ [Bacillus thuringiensis BMB171] gi|228636477|gb|EEK92945.1| Exonuclease RecJ [Bacillus cereus BDRD-ST24] gi|228653806|gb|EEL09676.1| Exonuclease RecJ [Bacillus cereus BDRD-Cer4] gi|228671637|gb|EEL26935.1| Exonuclease RecJ [Bacillus cereus Rock1-15] gi|228723221|gb|EEL74595.1| Exonuclease RecJ [Bacillus cereus AH676] gi|228798988|gb|EEM45961.1| Exonuclease RecJ [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325953|gb|ADH08881.1| single-stranded-DNA-specific exonuclease recJ [Bacillus thuringiensis BMB171] Length = 779 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|227529069|ref|ZP_03959118.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus vaginalis ATCC 49540] gi|227351081|gb|EEJ41372.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus vaginalis ATCC 49540] Length = 774 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 181/579 (31%), Positives = 287/579 (49%), Gaps = 26/579 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 + W + ++Q+ I ++AR+L R ++ + A F+ PS++ + DP Sbjct: 6 YDWQ-RIAAPDKQIVEQLSQELGINPVIARLLAERGITTPEEAHSFIQPSMQAVH-DPHQ 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +A+ E+I ++GDYD DG S ALM L N N Y+P+R DG Sbjct: 64 LHDMDKALERIQEAVAAGEQITVYGDYDADGITSTALMYEVLQDVGANVNYYVPNRFRDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN +K I++G +LIITVD G + + QGIDVIV DHH++ + AYA+ Sbjct: 124 YGPNAEAYQKIIDQGTKLIITVDNGVSGKAVIDPVVKQGIDVIVTDHHEMPEDLPDAYAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P L GV F V + + LLDLVA+ + DVV Sbjct: 184 VHPRYPGSNYPFADLSGVGVAFKVAWALLDEFPE-----------ELLDLVAIGEIADVV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 + NR ++ G+ R+ PGL AL++ IS +T +++G++I P +NA GRI + Sbjct: 233 SVSDENRPLIMMGIQELRQGMRPGLHALVKEAGISEQSLTDQDIGFVIAPRLNALGRIAD 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N G LL + D LA ++ N R+ + + ++ +A+ +V Q V++V Sbjct: 293 ANEGVELLTTLDEDRATKLAKAVEQANSKRQELVNEIMGEAQQQVDRLP---QDQPVLLV 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEG 432 G WH G++G++A+RL ++ G+P+ S +D K GSGRS++GF++ + Sbjct: 350 VGHDWHQGVLGIVASRLMDQTGKPTIVASTNDDQKIAKGSGRSVDGFNL--FAALDGHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ GGH A GL+ E N +L + A N KI ++ + V++ L Sbjct: 408 LMTSFGGHPAACGLSFETENSEKLRNVLLHEAENQHFDGQKKQPLKIAASISPAEVSMQL 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 D L S P+G GN PVF ++ SI + HL+ Q S+ + IAF Sbjct: 468 YDQLVSLSPFGPGNEQPVFELQPDQINSIVTMGKDNSHLKFMVGDQQSQ-VTVIAFG--K 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L L + ++ + + +N WRG + QL + D Sbjct: 525 GKLAAVLRAAMANQIKLAVKISINEWRGKRTVQLMLEDI 563 >gi|218231207|ref|YP_002369218.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus B4264] gi|218159164|gb|ACK59156.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus B4264] Length = 779 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQNEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|315634623|ref|ZP_07889907.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter segnis ATCC 33393] gi|315476571|gb|EFU67319.1| single-stranded-DNA-specific exonuclease RecJ [Aggregatibacter segnis ATCC 33393] Length = 577 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 170/568 (29%), Positives = 277/568 (48%), Gaps = 22/568 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ +R++ L+ ++ + P +++ D A +++A +KI+I G Sbjct: 19 DPLLDRLYRSRHIKNANQ---LDRTLSAMHH-PNLMSGMDTAVTFLLEAYQKQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L N +P+R GYG + ++ ++ + G +L++TVD Sbjct: 75 DFDADGATSTALAVLALRQLGFANVTYLVPNRFEQGYGLSVAVAQEALALGVELLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + QG VIV DHH A A+VNPN + HL GV F + Sbjct: 135 GVSSHEGVAFLKAQGGKVIVTDHHLPPETLPNADAIVNPNLVHCGFPSKHLAGVGVTFYL 194 Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + R+ + LLDLVAL TV DVVPL NR V +G+ + + Sbjct: 195 MLALRAKFRELGLFDTKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGIARIRAERC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++AL E + A +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RCGIRALAEVAKRDVTRFVAADLGFSIGPRLNAAGRLDNMSVGVELLLAENMETARALAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-----DIQQASVIVVEGDRWHPGIVGLLAAR 389 +LD LNQ R+ +E M +A + IV+ WH G++G+LA+R Sbjct: 315 ELDGLNQARKEIEQGMKLEALTICQNLFANTTALETDIPHSIVLYQSDWHQGVLGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLT 447 +KE+F RP A + ++ G GS RSI G I ++ + ++K GGHAMAAGL+ Sbjct: 375 IKEQFHRPVIAFAQDQAGMLKGSARSIPGLHIRDVLERVYSQHPDLILKFGGHAMAAGLS 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F F + ++ DG LNA+ +N+A + L GP+G P Sbjct: 435 IQESRFDDFRQIFNQTVSELLAEDQLQGTIWTDGELNANLLNLATAETLRQGGPWGQAFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL+M E + L AIAF + + + K Sbjct: 495 EPLFDGE-FKILQQRLVGEKHLKMMVEPKLGGPLLDAIAFNIDTRYYPDLSI----KTAR 549 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPVEG 594 L +N +RG++ QL V P+E Sbjct: 550 FAYKLDINEFRGNRDLQLLVDYIEPLES 577 >gi|229152612|ref|ZP_04280801.1| Exonuclease RecJ [Bacillus cereus m1550] gi|228630873|gb|EEK87513.1| Exonuclease RecJ [Bacillus cereus m1550] Length = 779 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A ++ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAMLTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|186896596|ref|YP_001873708.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis PB1/+] gi|186699622|gb|ACC90251.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pseudotuberculosis PB1/+] Length = 577 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 277/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 22 LPPLLRRLYASRGVKDAQE---LERGVKGLLA-WQKLDGIDAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LN+ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + A V DG LN + +++ ++L GP+G P Sbjct: 438 EEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF V T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576 >gi|170023171|ref|YP_001719676.1| ssDNA exonuclease RecJ [Yersinia pseudotuberculosis YPIII] gi|169749705|gb|ACA67223.1| single-stranded-DNA-specific exonuclease RecJ [Yersinia pseudotuberculosis YPIII] Length = 577 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 277/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L ++ L+ L D + QA+ + +I+I Sbjct: 22 LPPLLRRLYASRGVKDAQE---LERGVKGLLA-WQKLDGIDAGVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNLDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAADAIINPNLAGCDFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRECGWFEQRTLAVPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LN+ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDTLNKTRREIEQGMQVEALQLCDQLERTSSELPYGIAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + A V DG LN + +++ ++L GP+G P Sbjct: 438 EEGKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGAELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF V T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMVEPLNGGPLLDGIAFNVDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 553 AYKLDINEYRGNRSVQLLVQHLWP 576 >gi|228987660|ref|ZP_04147774.1| Exonuclease RecJ [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772120|gb|EEM20572.1| Exonuclease RecJ [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 779 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|197250349|ref|YP_002147954.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214052|gb|ACH51449.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 577 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|161581988|ref|NP_232047.2| ssDNA exonuclease RecJ [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 579 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 18 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 134 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 253 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 374 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 434 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 549 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 577 >gi|332160508|ref|YP_004297085.1| ssDNA exonuclease RecJ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664738|gb|ADZ41382.1| ssDNA exonuclease RecJ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863447|emb|CBX73566.1| single-stranded-DNA-specific exonuclease recJ [Yersinia enterocolitica W22703] Length = 577 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 275/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ +R V L ++ L+ L + + QA+ + +I+I Sbjct: 22 LHPLLRRLYASRGVKSAEE---LERGVKGLLA-WQQLDGIGASVTLLQQALADRRRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPEVVEQVAARGAELIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A GI V+V DHH A A++NPN L GV F Sbjct: 138 NGISSHAGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLAGCNFLSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRDSGWFEQRTLAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIRALLEVANRDARQLVANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LNQ RR +E M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAMFHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGLLKGSGRSVTGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + A V DG LN + +++ ++L GP+G P Sbjct: 438 EQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELNGNELSLETAELLRDGGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYKLDINEYRGNRSVQLLIQHLWP 576 >gi|229098883|ref|ZP_04229819.1| Exonuclease RecJ [Bacillus cereus Rock3-29] gi|228684556|gb|EEL38498.1| Exonuclease RecJ [Bacillus cereus Rock3-29] Length = 773 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 182/589 (30%), Positives = 282/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW E R + +K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYNE--ERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTVGRVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + + V+V+ Sbjct: 293 TPAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENKFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A N +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|153830652|ref|ZP_01983319.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 623-39] gi|148873861|gb|EDL71996.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 623-39] Length = 584 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++IITV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIITV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEAQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582 >gi|262042533|ref|ZP_06015690.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040093|gb|EEW41207.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 577 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 182/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P LT +KA + A I++ Sbjct: 21 DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHDAFQKGLHIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDARGIPAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + S + + +WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSADTLPSGLAMYHPQWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L A+ +++ + ML AGP+G P Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAAAEMSMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVDGGPLLDGIAFNVDTSIWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576 >gi|254226631|ref|ZP_04920211.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V51] gi|125620850|gb|EAZ49204.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V51] Length = 579 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 18 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 134 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 253 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 374 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 434 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 549 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 577 >gi|229158024|ref|ZP_04286095.1| Exonuclease RecJ [Bacillus cereus ATCC 4342] gi|228625477|gb|EEK82233.1| Exonuclease RecJ [Bacillus cereus ATCC 4342] Length = 779 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPSPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|153826878|ref|ZP_01979545.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MZO-2] gi|149739294|gb|EDM53550.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MZO-2] Length = 584 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 177/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDSLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582 >gi|89092001|ref|ZP_01164956.1| RecJ exonuclease [Oceanospirillum sp. MED92] gi|89083736|gb|EAR62953.1| RecJ exonuclease [Oceanospirillum sp. MED92] Length = 577 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 188/564 (33%), Positives = 281/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++AR+ +R ++ D L + L+PD L D+A R+V A+ E ++I Sbjct: 22 VNPVLARIYASRGITD---LDSLGRKLSELLPD-QGLAGIDQAVNRLVAAVTQQESVLIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S ++ + L ++ +P+R GYG +P ++ + LI+TVD Sbjct: 78 GDFDCDGATSTSVAVLALRMMGLDDVRYLVPNRFEYGYGLSPEIVAEAKKLSPGLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + + A GIDVIV DHH SE A A+VNPN+ C GV+F Sbjct: 138 NGISSIEGVAAANQAGIDVIVTDHHLAGSELPEACAIVNPNQPHCGFVAKSTCGVGVIFY 197 Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 V++ + R L+ N +L SLLDLVAL TV DVVPL NR +V +GL + Sbjct: 198 VMIALRRALQNQNWFERIARPAPNLASLLDLVALGTVADVVPLEQNNRVFVYQGLQRIKA 257 Query: 274 Q-GNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PGLKALIE T +LG+ I P +NA GR+ + ++G L++D +++ + Sbjct: 258 GYCRPGLKALIEVSGRQQHKTTSSDLGFAIAPRLNAAGRLEDMSIGIECLLTDSAEKAKE 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQA-EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ L+ LNQ R+ +E M +QA E Q D+ Q + + + WH G++G+LA+R+ Sbjct: 318 LAITLNELNQERKGIEQEMQQQALELLARLQLDEQQLPFGLSLYEEEWHQGVIGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDI--GKMVSFAVEEGILVKGGGHAMAAGLTV 448 KE+ RP A + ++G+ GS RSI GF I G A +L K GGHAMAAGLT+ Sbjct: 378 KERTHRPVIAFAQGDEGELKGSARSISGFHIRDGLDAIAARYPQLLKKFGGHAMAAGLTI 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + F + + DG+L + + + L +ML AGP+G P Sbjct: 438 RVSDLELFQSAFDEEVKRQLSEQDLEQQVLTDGLLTSEEMTLELAEMLRDAGPWGHQFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F L RVV HL+M E + AI F + ++ V Sbjct: 498 PLFEGQ-FSLLQQRVVGQRHLKMVLMEPSSGLAIDAIQFNADMGLWPD----ESRTQVRV 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG + Q+ V P Sbjct: 553 VYKLDVNEFRGQRNVQMLVEHLLP 576 >gi|297581041|ref|ZP_06942966.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC385] gi|297534867|gb|EFH73703.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC385] Length = 584 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ +NR VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLNRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E+ NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEKQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582 >gi|315224629|ref|ZP_07866454.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga ochracea F0287] gi|314945414|gb|EFS97438.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga ochracea F0287] Length = 564 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 159/580 (27%), Positives = 281/580 (48%), Gaps = 23/580 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + W + Q+ I + +A +L R V+ AKDF P++ L +P + Sbjct: 3 YTWNFKPLPPQ-AIVATLQQELNISEPLAILLAQRGVTTFQQAKDFFRPTLSQLH-NPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + +A R+ +A+ ++E I+I+GDYDVDG ++V+LM +LS+ + + Y+PDR +G Sbjct: 61 MKGMKEAVARLDRALKSNETILIYGDYDVDGTSAVSLMEHYLSNFTSKLHTYVPDRYTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ +G LII +DCG + D ++YA + ID I+ DHH+ + A A+ Sbjct: 121 YGISFQGIDYAEAQGCTLIIALDCGIKAIDKVEYAKEKAIDFIIADHHRPSEQVPDAIAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + D LC G+ F + + L +L+ LLDLVA+AT D+V Sbjct: 181 LDPQQADCPYPYKELCGCGLGFKLAQAYHEYL-----QRPFSELIPLLDLVAVATAADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL V + G+KAL IT ++ + P +NA GRI Sbjct: 236 PMDGENRCLTYFGLEVLNNNPSAGVKALFGEHQGK--ITITDVVFKAAPRVNAAGRIEHG 293 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL D ++ + A +++ LN +R+ ++S++ +A ++ + + Q+ VV Sbjct: 294 KYAVALLTETDEEQAVLKAKEIEALNTHRKELDSSIATEALNQI--EANGEQEHYTSVVF 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+RL E + RP+ + K S RS++GFDI + + E L Sbjct: 352 NEEWHKGVIGIVASRLIEHYYRPTVVFTKSG-NKYAASARSVQGFDIYEALEQCSEY--L 408 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT+ + + F++ + + + P ID L S + L + Sbjct: 409 EQFGGHKYAAGLTLRPEQYPLFKNAFEEVVKQTIDSSLRIPKLFIDTALPLSKLTQKLYN 468 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDS-ETLQAIAFRVYG 550 +L+ P+G N P+F + + + HL++T + + A+ F + Sbjct: 469 VLKQFEPFGPLNLPPLFYAESVIDTGFAKRIGKDEEHLKLTLKEVGTISYYDAVGFGLAH 528 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + G+ + + N W G QL++ D Sbjct: 529 ----KLPIVTSGRPFSIVYSIEENQWNGRVSLQLQIRDIK 564 >gi|311693657|gb|ADP96530.1| bacterial RecJ exonuclease [marine bacterium HP15] Length = 577 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 288/566 (50%), Gaps = 21/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ D + +++ L PL L D+A + +AI +++++ Sbjct: 21 NLPPLLRRLYAARGVTSDEQLSY---TLKHL-ASPLSLRGIDRAVELLAEAIDQQQRVLV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN--EGAQLII 154 GD+D DGA S A+ M LS + + +P R DGYG P ++E+ + + L++ Sbjct: 77 LGDFDADGATSTAVAMLGLSMLGLQSIDFRVPSRFADGYGLTPGIIERLRDEGQLPDLMV 136 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G ++ + ++ A G+ V+V DHH E A A+VNPN+ + GV Sbjct: 137 TVDNGISAVEGVRAAKELGVKVMVTDHHLAGEELPDADAIVNPNQPGCPFLSKNAAGVGV 196 Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +F VL + + LR+ N++P +L LLDLVAL TV DVVPL NR +V +GL R+ Sbjct: 197 MFYVLTALRKQLRETNRLPDPEPNLGCLLDLVALGTVADVVPLDHNNRIFVEQGLRRIRQ 256 Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG+ AL+E I++ +LG+++GP +NA GR+ + ++G L++D E Sbjct: 257 GEARPGILALLEVAGRDHTAISSTDLGFVVGPRLNAAGRLDDMSIGIACLLADSPDEARR 316 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390 LA +LD N+ RR +E M QA+ + + D+ + WH G++G+LAAR+ Sbjct: 317 LARELDTFNRERRTIEKDMKAQAQDLLSSMSLDLDGLPWGLALFDTDWHQGVIGILAARI 376 Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +E+ RP+ A + +E+G GS RSI G I +++ GI+ K GGHAMAAG+T Sbjct: 377 REQTHRPTIAFAPDENGVDIKGSARSIPGLHIRDVLAVVDSRHPGIMKKFGGHAMAAGMT 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + R + + F + + + A DG L AS +++ +L+ AGP+G P Sbjct: 437 LARDDLDAFSEAFDRAVRDTLSAEDLEAAITTDGPLGASELSLDTAALLKRAGPWGQHFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F ++ S R+V HL++ + + + IAF G + Sbjct: 497 EPLFDGE-FRVVSQRIVGENHLKLVLQPVEGGGIIDGIAFNT-----GPEVPDYTRTGAR 550 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 V N +RG QL V P+ Sbjct: 551 VVYKPDANTFRGRTNLQLLVDYLEPL 576 >gi|290968823|ref|ZP_06560360.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera genomosp. type_1 str. 28L] gi|290781119|gb|EFD93710.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera genomosp. type_1 str. 28L] Length = 658 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 186/582 (31%), Positives = 295/582 (50%), Gaps = 25/582 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW G +T++ I +++++LVNR ++ + + FL +I DP Sbjct: 3 KRWQLQAGAPTAEA--QLTKELHISPVLSKMLVNRGITTVEEGRHFLRDTIADS-ADPYR 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + A R+ +AI E+I+I+GDYDVDG + A+M L YIP+R +G Sbjct: 60 MKGLEAAVLRLDKAIDEQERIVIYGDYDVDGITATAIMCAVLRDLGAAPEFYIPERQSEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +E G Q+++TVDCG S+D + +D+I+ DHH+ S+ PAYA+ Sbjct: 120 YGLHQEALEYLQQIGTQVLVTVDCGIASHDLVARFNTA-MDIIITDHHEPPSKVPPAYAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ ++D L AGV +L+ +++ R + L + ++ AL T+ D+V Sbjct: 179 LDAKQVDCSYPYKELAGAGVAYLLCRALWQKRR-------HTPLENYAEIAALGTIADLV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL G NRA V GL R+ N GL+AL + I ITA + Y I P +NA GRI Sbjct: 232 PLTGENRALVRAGLQRMRQGANMGLQALFQEARIEAEKITAGRIAYTIAPRLNAAGRISH 291 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G +LL+S D +E +A +L LNQ R+ +E + + A ++ Q ++ V++ Sbjct: 292 AKQGVQLLLSHDREETRTIAARLTALNQERQRLEQDIAQLAATQISAQGR--EKDGVLIA 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WHPG++G+ A+RL EKF RP+ IS + G G GS RSI GF++ + + FA E + Sbjct: 350 YGEDWHPGVIGIAASRLVEKFYRPALVISIQN-GIGKGSCRSIPGFNMYQALQFA--EDL 406 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGH MAAG +V N L ++A + P ID L+ +++ LI Sbjct: 407 LLQYGGHTMAAGFSVRVENIEALRRRLCEYAAQQLCPDDYIPRLAIDMQLDIQDISLELI 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGT 551 L PYG GN P+F+ LQ I+ + HL++ ++ L AI + + Sbjct: 467 QELSCLEPYGMGNSRPIFSLSRAVLQHIQPIGAGNRHLRLVIDTPQ-RELTAIGWSMSEA 525 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 G ++ + L N +RG QL V D E Sbjct: 526 ARSLL----DGDQVGLAFQLERNEFRGQVMPQLVVQDIHAPE 563 >gi|49481496|ref|YP_038459.1| single-stranded-DNA-specific exonuclease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49333052|gb|AAT63698.1| single-stranded-DNA-specific exonuclease [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 779 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 179/589 (30%), Positives = 281/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYN--GERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L + YIP+R +GY Sbjct: 64 EGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+S+D +E + LA ++D LN+ R+ + + E+A A+V T + V+V+ Sbjct: 293 TPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKKITEEAIAEVETNFPP-EDNKVLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ + + + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|227551359|ref|ZP_03981408.1| recombination protein J [Enterococcus faecium TX1330] gi|227179478|gb|EEI60450.1| recombination protein J [Enterococcus faecium TX1330] Length = 765 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 174/581 (29%), Positives = 276/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFNWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG SV +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSVTVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I +G QLIITVD G DA+ YA G+DVI+ DHH++ + AYA Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E I E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + E+A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRS+E ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F ++ +++ + HL+ + S+ L A+AF Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E L+ + + V G L +N W G K+ QL V D + Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558 >gi|289675179|ref|ZP_06496069.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. syringae FF5] Length = 570 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 286/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 NF + F + + T DG L ++ L L +AGP+G P Sbjct: 432 PEENFPAFAEAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVPIAP 570 >gi|307129432|ref|YP_003881448.1| ssDNA exonuclease, 5' --> 3'-specific [Dickeya dadantii 3937] gi|313104200|sp|P39693|RECJ_DICD3 RecName: Full=Single-stranded-DNA-specific exonuclease recJ gi|306526961|gb|ADM96891.1| ssDNA exonuclease, 5' --> 3'-specific [Dickeya dadantii 3937] Length = 576 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 183/566 (32%), Positives = 279/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++P ++ R+ R V L S+R L+ D +L +A + QA+ ++ +I+I Sbjct: 20 SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGITQAVEVLRQALADNRRIVI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R DGYG +P ++ + +GA+LI+TV Sbjct: 76 VGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A +GI V+V DHH A A++NPN D L GV F Sbjct: 136 DNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L LLDLVAL TV DVVPL NR + +GL R Sbjct: 196 YLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIR 255 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ +D + Sbjct: 256 AGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 MLA LD LNQ+RR +E+ M +A + + +WH G+VG+LA+R Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVGILASR 375 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLS 435 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F F + A V DG L + + + +ML AGP+G P Sbjct: 436 LVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPWGQAFP 495 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F +L R+V HL++ E L IAF V + S + + Sbjct: 496 EPTFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD----SSVREVE 550 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L VN +RG + QL + P+ Sbjct: 551 LAYKLDVNEFRGKRSVQLLIEHLWPL 576 >gi|330504616|ref|YP_004381485.1| exonuclease RecJ [Pseudomonas mendocina NK-01] gi|328918902|gb|AEB59733.1| exonuclease RecJ [Pseudomonas mendocina NK-01] Length = 569 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 175/562 (31%), Positives = 280/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V L+ + L+P L D A +V+A+ ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSAEE---LDKGLARLIPY-QQLKGIDAAVELLVEALVQCQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++ + L++TV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALERKPDLLLTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH E A A+VNPN+ + GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCTFPSKAMAGVGVMF 192 Query: 217 LVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLLALRARLRETGWFASRVEPNLGELLDLVALGSVADVVPLDANNRILVHQGLARIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD + Sbjct: 253 RARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDEALARDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ D + + WH G++G+LA+RLKE Sbjct: 313 AVQLDQLNQDRKAIEQGMQREALAQLKDLSLD-DMPFGLCLFEPDWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ G I + A G++ K GGHAMAAGL++ + Sbjct: 372 RYHRPAIAFADAGEGMLKGSARSVPGLHIRDALDAVAARHPGLISKFGGHAMAAGLSLPQ 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NFG F + T DG L+A+ ++ L L +AGP+G P P+ Sbjct: 432 ANFGAFAAAFDAEVRRQLSEDDLTGRLLSDGQLDATEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F ++ R+V HL++ +++ S L IAF + E + + Sbjct: 492 FHG-VFQIVGQRIVGERHLKLVLKTECGSVQLDGIAFNIDR----EVWPNPTLRWAELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V +P Sbjct: 547 KLDLNEFRGNETVQLMVAHIAP 568 >gi|229514043|ref|ZP_04403505.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TMA 21] gi|229349224|gb|EEO14181.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TMA 21] Length = 584 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 280/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAVLKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582 >gi|257896024|ref|ZP_05675677.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium Com12] gi|257832589|gb|EEV59010.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium Com12] Length = 765 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 275/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFNWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I +G QLIITVD G DA+ YA G+DVI+ DHH++ + AYA Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E I E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + E+A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRS+E ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F ++ +++ + HL+ + S+ L A+AF Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E L+ + + V G L +N W G K+ QL V D + Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558 >gi|77359474|ref|YP_339049.1| single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Pseudoalteromonas haloplanktis TAC125] gi|76874385|emb|CAI85606.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Pseudoalteromonas haloplanktis TAC125] Length = 573 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 175/563 (31%), Positives = 268/563 (47%), Gaps = 17/563 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ RNVS LN S L D + D DKA +++A++ I+I Sbjct: 19 HLHPVIKQIYATRNVSHADE---LNNSAATLH-DFKLFKDMDKACDLLIEALHAQSHILI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S A +M+ L+ + + +PDR GYG +P+L + + L+ITV Sbjct: 75 VGDFDADGATSTATLMQGLAMFGFAHLDYLVPDRFSLGYGLSPALAAQIVQLKPDLVITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + I V+V DHH A A+VNPNR D + GV F Sbjct: 135 DNGISCIAGIDIVKAANIKVLVTDHHLQGETLPNADAIVNPNRHDCSFPSKSIAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 +L+ + LR+ N +L LLD+VAL TV DVV L NR V +GL R Sbjct: 195 YLLIALRSTLREQNHFAQQPMPNLADLLDIVALGTVADVVALDANNRTLVHQGLARIRSG 254 Query: 275 G-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG+ ALIE N + S ++A + G+ + P +NA GR+ + +LG L+S D + + Sbjct: 255 KTRPGITALIEVANRNASRLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSTDINQARRI 314 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLK 391 A +LD LN RR +E M +A+A + + I + + WH G++G+LA RLK Sbjct: 315 ASELDSLNFARREIEQGMQHEAQAVLDKLAFNDDNIPDAICLYQEDWHQGVIGILAGRLK 374 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 EK+ RP+ + E+G+ GS RSIEG I ++ + ++ K GGHAMAAGL++ Sbjct: 375 EKYHRPTVIFAGGENGEIKGSCRSIEGLHIRDLLEGLSTADPHLISKFGGHAMAAGLSIN 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F F + + DG L + L+ AGP+G P P Sbjct: 435 EQQFSEFKHAFDTAVSAQLSEESKRCIVFTDGELPNECFTMDFAQQLKQAGPWGQQFPEP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 VF +L R+V HL++ + Q + AIAF + + + + + Sbjct: 495 VFEHT-FELIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPD----NNAQFVKAAY 549 Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG QL + + Sbjct: 550 QLDINEFRGKFTLQLIIRELEKA 572 >gi|229592386|ref|YP_002874505.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens SBW25] gi|229364252|emb|CAY51960.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens SBW25] Length = 569 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 276/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L D A +V A+ ++I+I Sbjct: 17 DLPPLLTRLYAARGVQSE---AELDKSLARLIPY-QRLKGIDAAVDLLVTALEQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + L + + +P+R GYG P ++ + QL+ITV Sbjct: 73 VGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGWYEHKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG+KA++E + IT+ +LG+++GP +NA GR+ + +LG L++ D + Sbjct: 253 RARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD +NQ+R+ +E M +A A++ + + + WH G++G+LA+R+KE Sbjct: 313 AAQLDGMNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDPEWHQGVIGILASRMKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + DG GSGRS+ GF I ++ ++ K GGHAMAAGLT+ Sbjct: 372 RYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L AGP+G P P+ Sbjct: 432 ENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF V E + + + Sbjct: 492 FHG-VFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 547 KLDVNEFRGNETVQLMIAHIEP 568 >gi|153822235|ref|ZP_01974902.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33] gi|229512281|ref|ZP_04401760.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33] gi|229519417|ref|ZP_04408860.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC9] gi|229607029|ref|YP_002877677.1| ssDNA exonuclease RecJ [Vibrio cholerae MJ-1236] gi|254849540|ref|ZP_05238890.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MO10] gi|9656991|gb|AAF95560.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520245|gb|EAZ77468.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33] gi|229344106|gb|EEO09081.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC9] gi|229352246|gb|EEO17187.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae B33] gi|229369684|gb|ACQ60107.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MJ-1236] gi|254845245|gb|EET23659.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MO10] Length = 584 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582 >gi|104783218|ref|YP_609716.1| ss DNA specific exonuclease RecJ [Pseudomonas entomophila L48] gi|95112205|emb|CAK16932.1| ss DNA specific exonuclease RecJ [Pseudomonas entomophila L48] Length = 569 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 177/561 (31%), Positives = 279/561 (49%), Gaps = 18/561 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ + L+P L D A +V+A+ ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---TELDKGLARLLP-FQQLKGIDAAVDLLVEALDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P +++ + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVQVALERQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A+VNPN+ L GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLRVLVTDHHLPGEQLPDADAIVNPNQPGCEFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D+ + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALALDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AQELDGLNQDRKSIEQGMQREALAQLKDLPVE-SMPYGLCLFDADWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGEGMLKGSARSVAGFHIRDALDAVAARYPSLISKFGGHAMAAGLSLPA 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L +AGP+G P P+ Sbjct: 432 DNFPAFAEAFDAEVRRQLREEDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L S RVV HL++ +S+ TL IAF V E + + + Sbjct: 492 FHG-VFQLVSQRVVGERHLKVVLKSECGAVTLDGIAFGVDR----EVWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL + Sbjct: 547 KLDVNEFRGNESVQLMIAHME 567 >gi|259909553|ref|YP_002649909.1| ssDNA exonuclease RecJ [Erwinia pyrifoliae Ep1/96] gi|224965175|emb|CAX56707.1| Single-stranded-DNA-specific exonuclease [Erwinia pyrifoliae Ep1/96] gi|283479630|emb|CAY75546.1| recJ [Erwinia pyrifoliae DSM 12163] Length = 572 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 191/560 (34%), Positives = 279/560 (49%), Gaps = 17/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ +R VS L + L P L+ +KA + A+ +++ IMI Sbjct: 21 DLNPLLRRLYAHRGVS---CASELERGAKNLHP-FQSLSGIEKAVTLLQHALADNQCIMI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TV Sbjct: 77 VGDFDADGATSTALAVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A +GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSLAGVALAHQKGIAVLVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275 +++ + LR L +L LLDLVAL TV DVVPL NR V +GL R + Sbjct: 197 YLMLALRARLRDSGVNGL-PNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+S+D + MLA Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLGQARMLAS 315 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A A + + + I + WH G+VG+LA+RLKE+ Sbjct: 316 ELDALNQTRKEIEQGMQSEALALCNRLENASEALPLGIAMYHPEWHQGVVGILASRLKER 375 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 F RP A + DG GSGRSI G + ++ G++ K GGHAMAAGL++E Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTRHPGLIAKFGGHAMAAGLSLEEA 435 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + A V DG L A + + ++L AGP+G P P F Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLREAGPWGQAFPEPTF 495 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 +L R+V HL++ E L IAF V + K++ + Sbjct: 496 DGK-FRLLQQRLVGERHLKVMIEPIGGGPLLDGIAFNVDTALWPD----PSVKQVELAYR 550 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL + Sbjct: 551 LDVNEFRGTRSVQLIIDHLW 570 >gi|268318109|ref|YP_003291828.1| single-stranded-DNA-specific exonuclease RecJ [Rhodothermus marinus DSM 4252] gi|262335643|gb|ACY49440.1| single-stranded-DNA-specific exonuclease RecJ [Rhodothermus marinus DSM 4252] Length = 587 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 168/583 (28%), Positives = 286/583 (49%), Gaps = 17/583 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +RWV + A + +P+ +ARVLV R ++ + A+ F P + L DP + Sbjct: 4 YRWVRRPLPDPSAVATLMAAARYLPEPLARVLVARGITTVEAARAFFRPELDQLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + AARR+ +AI + E+++++GDYDVDG + AL+ FL V ++PDR G Sbjct: 63 MADMEAAARRLARAIEDREQVLVYGDYDVDGTTATALVTSFLKERGVPVRYFVPDRFRHG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG +E+ + G +L+I +DCG T+ + YA +G+D+I+ DHH + A A+ Sbjct: 123 YGLTQKALEEALEAGTRLLIALDCGITAAEEAAYARARGVDLIICDHHTAGATLPEAVAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P R D L V F ++ ++L + + LDLVAL+T D+V Sbjct: 183 LDPKRPDCPYPFPELSGCAVAFKLVQATLQVLGESPEAA-----YRYLDLVALSTAADIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 PL G NR + +GL RR PGL+ L R + + + + P INA GR+G+ Sbjct: 238 PLTGENRILMAEGLRHLRRSTRPGLQQLAARARWPLETLTMHGIVFGLAPRINAAGRLGD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N LL+++D+ + LA +LD N+ R+ ++ LE+A + Q +V+ Sbjct: 298 ANRAVALLLAEDAATADKLAAELDAANRERQQIDRRTLEEAIVQAERQITARDDRHALVL 357 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+R+ E+F RP+ + + GS RSI G +I + + E + Sbjct: 358 YHPDWHLGVIGIVASRIVERFYRPTILLCAVDS-ILKGSARSIAGINIYEALRDC--EDL 414 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGH AAGL +E + F + + + P +ID +L+ ++ Sbjct: 415 LLQFGGHTYAAGLALEENRLEAFRERFNEAVGARMTPELLVPRLEIDALLDLHTLDERFW 474 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQ---DSETLQAIAFR 547 +L+ GP+G N P+F + ++ ++V HL+ + D + I F Sbjct: 475 RLLQRFGPHGPENEEPLFMARDLEVVGEPKLVGGEGKHLKFYVRQRAHPDDPPCEVIGFG 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G+ + + L N W+G R QLR+ D Sbjct: 535 KERLLPAVQHSRRMGQPLALAFTLQENTWQGQTRLQLRLRDLK 577 >gi|302038557|ref|YP_003798879.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Nitrospira defluvii] gi|300606621|emb|CBK42954.1| Single-stranded-DNA-specific exonuclease RecJ [Candidatus Nitrospira defluvii] Length = 568 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 188/576 (32%), Positives = 295/576 (51%), Gaps = 18/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 WV ++++ +I + A VL+ R V+ D A +++ S++ + DP + Sbjct: 4 KLWVFRA--ADRALQHTLSKQLSISPVTASVLLARGVTTPDEATRWMS-SVQGGLHDPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D + A R+ QA+ E++ +GDYDVDG ++ +L + F NA YIP R+ +G Sbjct: 61 LPDMESAVERLHQALARQERVCFYGDYDVDGVSATSLYLSFYQGLGGNACGYIPHRVREG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + EG L++T DCG+TS+ + A G+DVIV DHHQ + A A+ Sbjct: 121 YGLNEGAVRRLAEEGISLLVTSDCGTTSHHEIAVARELGVDVIVTDHHQTDATMPAALAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP+R D + LC+AG+ + V+ + + P + LDLVALATV D+V Sbjct: 181 LNPHRRDAIYPFKGLCSAGLAYKVVSAYQQRYGSGDVEPDSC-----LDLVALATVADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL NR V +GL R G++AL + I+ T+E +G+ +GP +NA GR+ + Sbjct: 236 PLQDENRILVREGLTHITRGARAGIRALKQVAGIAKACTSETIGFRLGPRLNAAGRLDHA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L RLL ++ QE +A +L+ LN+ R+ +E + +A + + A+ IV+ Sbjct: 296 MLCVRLLTTESDQEAMQIAEQLEQLNRQRQQIEEGITREAATYLNQ----DEPAAAIVLG 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G+VG++AARL ++F RPS I+ + G+G GS R++EGF++ + +S + +L Sbjct: 352 SRDWHLGVVGIVAARLVDRFHRPSIVIAIDGQGRGKGSARTVEGFNLYQGLSEC--KDLL 409 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGH AAGLT++ F + A T P +D + + VN LI Sbjct: 410 EAYGGHPSAAGLTLKEARLEEFRRRFCEVAAQWAGGARTVPTLHVDAEVKLTDVNFDLIQ 469 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 LES P+GAGNP P A + RVV HL++ S +I FR+ Sbjct: 470 ELESLHPFGAGNPEPTLAVRGLDVVDARVVGEKHLKLRVRQGRSFIFDSIGFRMGSF--- 526 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 E L + + + N+W G R QLR+ Sbjct: 527 EELGLRANRPVDLAFSPERNHWNGYDRVQLRIKALR 562 >gi|21673199|ref|NP_661264.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium tepidum TLS] gi|21646280|gb|AAM71606.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium tepidum TLS] Length = 568 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 164/578 (28%), Positives = 272/578 (47%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +RW L + A+++ + +A LVNR +S + A+ F PS+ + P P + Sbjct: 4 YRWTCLEPEP--TLVQALSEAINVSSPIAAALVNRGISSFEEARRFFRPSLDEI-PSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +A R+ +AI+ EKIM++GDYDVDG + A++ FL YI DR +G Sbjct: 61 FNDMKRAVGRLSKAIFGGEKIMVYGDYDVDGTSGTAMLSLFLREMGAEVCHYINDRFTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + + +G LI+TVDCG + D +Q +G+DVIV DHH+ A A+ Sbjct: 121 YGLSEAGIAWAFEQGVSLIVTVDCGIRAIDEVQACVGKGVDVIVCDHHEAGELPA-ACAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV F ++ + + + LD VA+AT D+V Sbjct: 180 LNPKVEGCGYPFRELCGCGVAFKLMQAMVEARGES-----QDRWRNYLDFVAVATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NRAY+ +GL + RR +A+ + ++ + + N+ Y I P INA GR+ Sbjct: 235 SLQGENRAYLREGLELMRRSPRVSFQAMAANMKLNLAEFSMMNITYGIAPRINAAGRMES 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + + L+S D E + A +L+ LN RR +++ + +AE V C S IV+ Sbjct: 295 AGAAMQWLLSSDESEARLRAAELEALNVRRRQIDAEITARAETMVAGHCASF--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A++L +K+ P+ + G GS RS++ +I ++ Sbjct: 353 YDEAWHLGVLGIVASKLLDKYQLPTVVMGRMN-GLIKGSVRSVDQLNIYDVLHEC--RDH 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT+ F + ++P ID L + + Sbjct: 410 LEQFGGHHQAAGLTLRPEQLEAFRRRFDEVCRELLPVEARQKTLLIDADLTLDEITPKFL 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++LE P+G N P+F +L +++ H++ T + S + + IAF Sbjct: 470 NVLEQFAPFGFSNREPLFTATGCRLVGKPKLLRERHVKFTVRGEQSSSFEVIAFDRPDI- 528 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + N W G + QLRV+D + Sbjct: 529 FNDLEAHGSASALQLVCIPERNQWNGREYVQLRVMDMA 566 >gi|261211513|ref|ZP_05925801.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC341] gi|260839468|gb|EEX66094.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC341] Length = 579 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 175/588 (29%), Positives = 280/588 (47%), Gaps = 30/588 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + ++ I ++ R+ +NR V L + + L L Sbjct: 4 IQRRPDPDLSLLPD-----HIDPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGI 54 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGP 137 ++A + AI ++I++ GD+D DGA S AL + L N + +P+R DGYG Sbjct: 55 ERAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGL 114 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 +P ++++ I GA++I+TVD G +S + ++YA +G+ V+V DHH + A+VNP Sbjct: 115 SPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQQLPEVDAMVNP 174 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDV 253 N L GV F +++ + +RQ L+ L+DLVAL TV DV Sbjct: 175 NLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADV 234 Query: 254 VPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 VPL NR V +GL R PG++ALIE + A + G+ +GP INA GR+ Sbjct: 235 VPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRL 294 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQAS 369 + + G LL+ ++ +A +LD LNQ R+ +E A + L DD + Sbjct: 295 DDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPY 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA- 428 +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G + + Sbjct: 355 GLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKID 414 Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 GI++K GGHAMAAGLT+E NF R C F + + + DG L Sbjct: 415 TQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQVVREELDEAALKGIILSDGELKPEE 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQ 542 ++ ++L + GP+G P P+F K+ ++V HL++ E + + Sbjct: 475 FSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMID 533 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAF V + + K + + L +N +RG++ QL + Sbjct: 534 GIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577 >gi|294139503|ref|YP_003555481.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella violacea DSS12] gi|293325972|dbj|BAJ00703.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella violacea DSS12] Length = 574 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 286/565 (50%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ +R + + + ++ L+ P + D A++ I I ++ I+I Sbjct: 19 SFSPLLKQIYASRGTTAEEC----DLTLSRLLR-PNTMKGLDIASKIIADGIRDNRSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S + + L + IP+R GYG +P ++ ++GA+L+ITV Sbjct: 74 MGDFDADGATSTCVCLLALKMMGASKIDYLIPNRFDFGYGLSPEIVAVAHSKGAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH A A+VNPN++D + GV F Sbjct: 134 DNGISSIEGVAAAKALGMQVVITDHHLPGKTIPDADAIVNPNQVDCGFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ N +L LLD+VAL TV DVV L G NR V GL R Sbjct: 194 YLMSALRAELRQRNWYQEQGISEPNLAHLLDIVALGTVADVVALDGNNRILVEAGLKRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 254 AGRCRAGITALLEVAKRNPAKIVAADFGFAVGPRLNAAGRLDEMALGVETLLCDDMMSAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LN RR +E+ M ++A + + + ++ I + + WH G++G+LA+R Sbjct: 314 RMAAELDGLNAERRDLEADMQQEALKSLESVELNEASLPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +K+++ RP A + +G+ GS RSI+G + ++ + G+++K GGHAMAAGL+ Sbjct: 374 IKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F F ++ T F DG L+A+ +N+ + L +AGP+G P Sbjct: 434 LRGKDFETFEQAFDLAVRELLKPEQLTGEFVTDGDLSAADMNLTVASELRNAGPWGQEFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + K+ R+V HL++ E++ +T L AIAF + + ++ Sbjct: 494 EPLFDG-HFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKTWPDATIEHA----Q 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 V L VN +RG++ QL V P Sbjct: 549 VVYKLDVNEFRGNQTVQLMVEQIEP 573 >gi|332140211|ref|YP_004425949.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550233|gb|AEA96951.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas macleodii str. 'Deep ecotype'] Length = 573 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 181/563 (32%), Positives = 284/563 (50%), Gaps = 19/563 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ RN+ D L +R L L +AA+ + AI +++I+I Sbjct: 18 DLHPVIDRIYRGRNI--ANIDD-LENGLRGLTH-FNALKGMPEAAQILATAIEQNKRIII 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L + + +P+R GYG + ++++ +GA +I+TV Sbjct: 74 VGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVDEAAKQGADIIVTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + D + +A GI V+V DHH PA A+VNPN+ +L GV F Sbjct: 134 DNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKNLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + L+Q +L SLLD+VA+ TV DVV L NR V +GL R Sbjct: 194 YIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIR 253 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 Q PG+KAL+E N + +T+ +LG+++GP +NA GR+ + + G L+ DD+ + Sbjct: 254 AGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLLEDDTIQAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAAR 389 M+A +LD LN+ RR +E+ M QAE + D S +VV + +H G++G++A R Sbjct: 314 MIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYREDFHQGVIGIVAGR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 LKEK+ +P A + ++D GS RSI G I ++ G++ K GGHAMAAGL+ Sbjct: 374 LKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F A + L DG L+AS + + +L AGP+G G Sbjct: 434 LPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAHLLRQAGPFGQGFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 +P+F L R+V HL+M + + + AIAF V + KR+HV Sbjct: 494 SPLFDGE-FSLLDQRLVGQKHLKMVLKGDGANEVDAIAFNVDLKAWP----NAMVKRVHV 548 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L +N +RG + QL V Sbjct: 549 AYRLDINVFRGQETVQLIVEQIE 571 >gi|259046822|ref|ZP_05737223.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella adiacens ATCC 49175] gi|259036445|gb|EEW37700.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella adiacens ATCC 49175] Length = 771 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 170/586 (29%), Positives = 298/586 (50%), Gaps = 29/586 (4%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S + + W +++ + + + R+ V R + + + ++FL+P+ L+ Sbjct: 2 SFANYAWKLKE-NVDEELVTSLSSESGVSRNLVRLCVERGIQTAEELQEFLSPT-PHLIH 59 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP +L D DKA RI +AI N E I I+GDYD DG S ++ L + Y+P+R Sbjct: 60 DPFLLHDMDKAVGRIQEAIENGELIHIYGDYDADGITSTTILYETLEMLGAQVSYYLPNR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGYGPN ++ I EG LIITVDCG +++ ++YA G DVI+ DHH++ SE Sbjct: 120 FTDGYGPNTPAFQRVIEEGHTLIITVDCGIAAHEPIRYAMENGCDVILTDHHEIPSEIPE 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 AYA+V+P + G L AGV F + + + +++L A+ T+ Sbjct: 180 AYAVVHPRHPEANYPCGDLSGAGVAFKLAHALLGEFPE-----------EMVELAAIGTI 228 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGG 309 D+V L NR G+ ++ GL +L+E++++ + + +G+ IGP +NA G Sbjct: 229 ADLVSLTDENRTIAKLGIAQMKQTQRIGLVSLLEKLSVKMDKLDEKTIGFQIGPRLNALG 288 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G++ G +LL + D +E + + + N+ R+ + + ++E+A + Q Sbjct: 289 RLGDATPGVQLLTTFDDEEAQSIVDFMQSENERRQAIVNQIVEEATPIIQEQM----NQP 344 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA 428 ++V+ WH G++G++A+R+ E+ G+P+ + +DG GSGRS F++ ++ Sbjct: 345 ILVLAQPGWHEGVLGIVASRIVEQTGKPTLVLGISDDGLTAKGSGRSFGEFNLYDALTSV 404 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + L+K GGH MAAGLTVE + + D +++A + L ID VL + Sbjct: 405 --KDHLLKFGGHHMAAGLTVETIMLPTIIDGLEQYAKDHQDLLDAKATLTIDEVLPLKDI 462 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIA 545 + I+ L S P+G NP P+ + ++ S +++ HL++ + +S TLQA+A Sbjct: 463 TVEWIESLASLKPFGTDNPEPIVSLEGIQVASTQLLGADKKHLKLHLKEDNSTYTLQAMA 522 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 F ++ + G L +N W+ ++ QL V D + Sbjct: 523 FSKGEW----AASLQPDTKISIAGTLEINEWQNNRLPQLMVKDIAV 564 >gi|333029270|ref|ZP_08457331.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides coprosuis DSM 18011] gi|332739867|gb|EGJ70349.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides coprosuis DSM 18011] Length = 572 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 169/586 (28%), Positives = 281/586 (47%), Gaps = 22/586 (3%) Query: 15 GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + W + + + + ++ I I+ ++L+ R + + + A+ F +P ++ L DP Sbjct: 2 NYLWNYQNSSTKQLEESHKLAKELGINPILGKLLIQRGIHTPNDARTFFHPQLKDLH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D D A R+ QAI N E+I+I+GDYDVDG SV+L+ RFL N + YIP+R Sbjct: 61 FLMKDMDIAVDRLNQAIGNKERILIYGDYDVDGTTSVSLVYRFLQEYYSNIDYYIPNRYN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G LII +DCG + + + YA N+GID I+ DHH PA Sbjct: 121 EGYGVSQQGIDFAKETGVSLIIVLDCGIKAVEEITYAKNKGIDFIICDHHVPDDVLPPAI 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N RLD+ L GV F + + N +L+ LLDLVA++ D Sbjct: 181 AILNAKRLDNTYPYTDLSGCGVGFKFMQAFAQ-----NNGIEFHNLVPLLDLVAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLK++I+ + IT ++ + IGP INA GRI Sbjct: 236 IVPIMGENRILAYHGLKQLNNNPSIGLKSIIDVCSLEDREITISDIVFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LLI D ++ +A +++ N+ R+ ++ M E+A +++ D+ + Sbjct: 296 ENGKEAVDLLIERDYEKAIKIAKRINEYNETRKDLDKNMTEEA-NQIVENISDLSDLRSV 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ ++WH G++G++A+RL E + RP+ + + GS RS+ GFDI K + + Sbjct: 355 VLYNEKWHQGVIGIVASRLTEVYYRPAVVLCKSGE-FATGSARSVPGFDIYKAIEHC--K 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+ + + T P ID L+ + Sbjct: 412 DLLESFGGHTYAAGLSLKEENIKEFNRRFEAYVTEHILPEQTHPSINIDAELDFQEITRK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLA--HLQMTFES-QDSETLQAIAFR 547 L+ PYG N P+F + +VV H+++ + + L IAF Sbjct: 472 FCKDLKKFNPYGPYNQKPIFCTHQVYDYGTSKVVGRNQEHIKLELIDSKSNNILNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N R QL + D P+E Sbjct: 532 QSN----HVRYIKSRRSFDICYTIEANTHR-KGEIQLHIEDIKPIE 572 >gi|294792134|ref|ZP_06757282.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. 6_1_27] gi|294457364|gb|EFG25726.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. 6_1_27] Length = 660 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 185/589 (31%), Positives = 292/589 (49%), Gaps = 24/589 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 I RW G + ++ + IVA+++VNR++ +D + FL ++ L+ DP Sbjct: 2 IKKKRWRLCEGDREKESI--LIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLL-DP 58 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D A +++ I + + I+I+GDYDVDG + +++ RFL + YIP+R Sbjct: 59 FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N ++ I G L+ITVDCG +SYD ++ ++ I++I+ DHH A Sbjct: 119 EGYGLNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDR-INMIITDHHTAPDVIPRAK 177 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N + D +L GV F + ++ L LD+VAL TV D Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR V GL N G+ LI+ IT+ ++GY + P +NA GR+ Sbjct: 231 VVPLVGENRIIVKSGLEKMNSYPNLGINKLIDVSGLHERTITSGHIGYTLAPRLNAAGRV 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL++DD+ E +A +L+ N+ R+ +E + E A V Q V Sbjct: 291 THATRAVELLVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKA--DYVT 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 +V G+ WHPG++G++A+RL E+F +P+ IS + G G GS RSI+GF+I + E Sbjct: 349 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 IL++ GGH+ AAG +++ L + K+ +V A PV ID L +++ Sbjct: 406 DILLQFGGHSAAAGFSIDANRIDELRERLTKYCKEVVTAEEYIPVVAIDAELPVDDIDVD 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +ID + PYG N PVFA +Q I ++ H ++ F + + TL AIA+ Sbjct: 466 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNG-TLDAIAWNRP 524 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 F G + V L N W+G QL + P+ Sbjct: 525 DL----FRSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPLTEEPIK 569 >gi|152971838|ref|YP_001336947.1| ssDNA exonuclease RecJ [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896432|ref|YP_002921170.1| ssDNA exonuclease RecJ [Klebsiella pneumoniae NTUH-K2044] gi|150956687|gb|ABR78717.1| ssDNA exonuclease, 5' --> 3' specific [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548752|dbj|BAH65103.1| single-stranded-DNA-specific exonuclease [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 577 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 181/565 (32%), Positives = 280/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P LT +KA + A I++ Sbjct: 21 DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHDAFQKGLHIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDARGIPAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + +WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSADTLPGGLAMYHPQWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L A+ +++ + ML AGP+G P Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAAAEMSMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVDGGPLLDGIAFNVDTSIWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576 >gi|288927678|ref|ZP_06421525.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral taxon 317 str. F0108] gi|288330512|gb|EFC69096.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral taxon 317 str. F0108] Length = 582 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 165/586 (28%), Positives = 282/586 (48%), Gaps = 22/586 (3%) Query: 16 FRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W+ + A + +K + I+A++L+ R ++ + AK F P + ++ +P Sbjct: 3 FKWIYEPLSPQMQSAAKELGEKLNMSTILAQLLIRRGITTESAAKRFFRPQLNDII-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+IM++GDYDVDG SVAL+ +FL N YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTSVALVYKFLQQFYSNIEYYIPDRYEE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +L+I +DCG + + + YA + GID I+ DHH E PA A Sbjct: 122 GYGVSRKGIDYAHQSGVKLVIILDCGIKAIEEIAYAKSLGIDFIICDHHVPDEEMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HL GV F + + N L+ +LDL A++ D+ Sbjct: 182 ILNPKRPDDHYPFKHLSGCGVGFKFMQAFAK-----NNGIPFSRLIPMLDLCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V + NR GL + + GLKA+I+ +S I+ ++ + IGP INA GR+ Sbjct: 237 VQVEEENRILAFHGLKQLNQNPSLGLKAIIDICGLSGKEISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A ++ N+ R+ ++ M E+A +++ + + ++ S IV Sbjct: 297 SGKESVSLLVEKDYNVALQSAKHINEYNEQRKDIDKQMTEEA-NQIVARLESQKKQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ I+ + GS RS+ GFDI + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVIT-RDGDFATGSARSVMGFDIYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT+ + R + F ++ N + T + ID +++ + + Sbjct: 413 LLINFGGHTYAAGLTMRWDDVPRFVERFHQYVDNHILPEQTEAILHIDEIIDFKDITKKM 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GN P F N + +VV H+++ + S + IAF Sbjct: 473 HHDLKKFSPFGPGNLKPRFCTNNVYDYGTSKVVGREQEHIKLELIDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + + + + N +R + QL++ D E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFRHN-NVQLQIEDIRLTES 573 >gi|212636943|ref|YP_002313468.1| RecJ exonuclease [Shewanella piezotolerans WP3] gi|212558427|gb|ACJ30881.1| RecJ exonuclease [Shewanella piezotolerans WP3] Length = 637 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 174/565 (30%), Positives = 281/565 (49%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++ ++ ++ +R VS + + L +R P + +AA + AI + I+I Sbjct: 82 SLSPLLKQIYASRGVSANECELSLGKLLR-----PNTMLGVTQAAEIVADAIAAQKSILI 136 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L N + IP+R GYG +P ++ +GAQLIITV Sbjct: 137 MGDFDADGATSTSVCMLALKMMGANNIDYLIPNRFDYGYGLSPEIVAVAAQKGAQLIITV 196 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH A A+VNPN+ + GV F Sbjct: 197 DNGISSIEGVAAAKALGMTVVITDHHLPGQSIPDADAIVNPNQHGCEFASKSIAGVGVAF 256 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-A 271 ++ + LRQ + +L LLD+VAL TV DVV L NR V GL Sbjct: 257 YLMSALRAELRQRDWYQQQGINEPNLGHLLDIVALGTVADVVSLDTNNRILVEAGLQRVK 316 Query: 272 RRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 317 AGRCRVGITALLEVAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMLAR 376 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LN RR +E+ M ++A + + + ++ + I + WH G++G+LA+R Sbjct: 377 RMASELDSLNAERRDLETEMQQEALKSLESVELNESELPWGIALFQADWHQGVIGILASR 436 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + DG+ GS RSI+G + ++ + G+++K GGHAMAAGL+ Sbjct: 437 IKDKYHRPVIAFADAGDGQIKGSARSIKGLHMRDLLELINSRHPGLILKFGGHAMAAGLS 496 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F D + K +I+ + T DG L + L L +AGP+G P Sbjct: 497 IKAGQFALFADAYDKAIRDILAPELLTGELVSDGELTPDQFTLPLAAELRAAGPWGQNFP 556 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + ++ R+V HL++ E++ + L AIAF V + +Q Sbjct: 557 EPLFDG-HFRIIQQRIVGEKHLKLVLETECGQVMLDAIAFNVDLKTWPDASIQHA----E 611 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG++ QL V +P Sbjct: 612 IVYKLDVNEFRGNQTLQLMVDQIAP 636 >gi|62181552|ref|YP_217969.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224584831|ref|YP_002638629.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62129185|gb|AAX66888.1| ssDNA exonuclease, 5' --> 3' specific, Mg dependent [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224469358|gb|ACN47188.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716033|gb|EFZ07604.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 577 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|16766343|ref|NP_461958.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414988|ref|YP_152063.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167994105|ref|ZP_02575197.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168236101|ref|ZP_02661159.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168463790|ref|ZP_02697707.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823067|ref|ZP_02835067.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444014|ref|YP_002042293.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194735123|ref|YP_002115991.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264288|ref|ZP_03164362.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363917|ref|YP_002143554.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|17865729|sp|P28355|RECJ_SALTY RecName: Full=Single-stranded-DNA-specific exonuclease recJ gi|16421593|gb|AAL21917.1| ssDNA exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129245|gb|AAV78751.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194402677|gb|ACF62899.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194710625|gb|ACF89846.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633365|gb|EDX51779.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095394|emb|CAR60953.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197242543|gb|EDY25163.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290731|gb|EDY30085.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205328007|gb|EDZ14771.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340641|gb|EDZ27405.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261248174|emb|CBG26010.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995196|gb|ACY90081.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159598|emb|CBW19117.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914063|dbj|BAJ38037.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087471|emb|CBY97236.1| ssDNA exonuclease, 5'-> 3' specific [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225717|gb|EFX50771.1| Single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613440|gb|EFY10381.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621032|gb|EFY17890.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624096|gb|EFY20930.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628165|gb|EFY24954.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633284|gb|EFY30026.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636138|gb|EFY32846.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322647591|gb|EFY44080.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648775|gb|EFY45222.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653830|gb|EFY50156.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657936|gb|EFY54204.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664039|gb|EFY60238.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668950|gb|EFY65101.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673056|gb|EFY69163.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677953|gb|EFY74016.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681129|gb|EFY77162.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687941|gb|EFY83908.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131398|gb|ADX18828.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194863|gb|EFZ80050.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196614|gb|EFZ81762.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202686|gb|EFZ87726.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207827|gb|EFZ92773.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212621|gb|EFZ97438.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214896|gb|EFZ99644.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222627|gb|EGA06992.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225094|gb|EGA09346.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230616|gb|EGA14734.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235033|gb|EGA19119.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239072|gb|EGA23122.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244570|gb|EGA28576.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247185|gb|EGA31151.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253332|gb|EGA37161.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256361|gb|EGA40097.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262463|gb|EGA46019.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267441|gb|EGA50925.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269155|gb|EGA52610.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989909|gb|AEF08892.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 577 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|256819192|ref|YP_003140471.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga ochracea DSM 7271] gi|256580775|gb|ACU91910.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga ochracea DSM 7271] Length = 564 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 161/580 (27%), Positives = 281/580 (48%), Gaps = 23/580 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + W + Q+ I + +A +L R V+ AKDF P+ L +P + Sbjct: 3 YTWNFKPLPPQ-AIVATLQQELNISEPLAILLAQRGVTTFQQAKDFFRPTFSQLH-NPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + +A R+ +A+ ++E I+I+GDYDVDG ++V+ M R+LS+ + + Y+PDR +G Sbjct: 61 MKGMKEAVARLDRALKSNETILIYGDYDVDGTSAVSFMERYLSNFTSKLHTYVPDRYTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ +G LII +DCG + D ++YA + ID I+ DHH+ + A A+ Sbjct: 121 YGISFQGIDYAEAQGCTLIIALDCGIKAIDKVEYAKEKAIDFIIADHHRPSEQVPDAIAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + D LC G+ F + + L +L+ LLDLVA+AT D+V Sbjct: 181 LDPQQADCPYPYKELCGCGLGFKLAQAYHEYL-----QRPFSELIPLLDLVAVATAADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL V + G+KAL IT ++ + P +NA GRI Sbjct: 236 PMNGENRCLTYFGLEVLNNNPSAGVKALFGEHQGK--ITITDVVFKAAPRVNAAGRIEHG 293 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL D ++ + A ++D LN +R+ ++S++ +A ++ + + Q+ VV Sbjct: 294 KYAVALLTETDEEQAVLKAKEIDALNTHRKELDSSIAAEALNQI--EANGEQEHYTSVVF 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+RL E + RP+ + K S RS++GFDI + + E L Sbjct: 352 NEEWHKGVIGIVASRLIEHYYRPTVVFTKSG-NKYAASARSVQGFDIYEALEQCSEY--L 408 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT+ + + F++ + + + P ID L S + L + Sbjct: 409 EQFGGHKYAAGLTLRPEQYPLFKNAFEEVVKQTIDSSLRIPKLFIDTALPLSKLTQKLYN 468 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSET-LQAIAFRVYG 550 +L+ P+G N P+F N + + HL++T + + + A+ F + Sbjct: 469 VLKQFEPFGPLNLPPLFYAENVIDTGFAKRIGKDEEHLKLTLKEVGTTSYYDAVGFGLAH 528 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + G+ + + N W G QL++ D Sbjct: 529 ----KLPIVTSGRPFSIVYSIEENQWNGRASLQLQIRDIK 564 >gi|37527423|ref|NP_930767.1| ssDNA exonuclease RecJ [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786858|emb|CAE15923.1| Single-stranded-DNA-specific exonuclease RecJ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 577 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 175/564 (31%), Positives = 285/564 (50%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ R+ R + + L ++ L+ + L+ ++A ++ A++ +I+I Sbjct: 22 IHPLLRRLYAIRGI---QQANELERGVQGLL-NYQHLSGVEQAVALLLTALHEHWRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL +R L + +P+R +GYG + ++E+ + +GA LIITVD Sbjct: 78 GDFDADGATSTALAIRSLRSMGYRHLDYLVPNRFDNGYGLSSQVVEEVVKKGADLIITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S++ + A + VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHEGVAAAHQHRMKVIVTDHHLPGDVLPAADAIINPNLADCSFPSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LR+D +L +LDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMSALRAALRKDQWFEKQGIALPNLAEMLDLVALGTVADVVPLDTNNRILVYQGLNRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G++AL+E + +TA +LG+ +GP +NA GR+ + ++G LL++DD + Sbjct: 258 GRCCAGIRALLEVSSRDAYKLTASDLGFFLGPRLNAAGRLDDMSIGVTLLLTDDIAKARQ 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LNQ RR +E M ++A + + + + WH G+VG+LA+R+ Sbjct: 318 IACELDSLNQTRREIEQGMQQEALQICDKLERTSTELPYGLALYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS++G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGILKGSGRSVQGLHMRDALERLDTLHPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F + F + + V DG L + +++ + +ML GP+G P Sbjct: 438 EQDKFEQFQYHFSTLMADWLDISQLEGVIWSDGELAINELSLDIAEMLRDGGPWGQAFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F KL R+V HL++ E L IAF + T + + + + + Sbjct: 498 PIFDGK-FKLLQQRIVGERHLKVIVEPLNGGPMLDGIAFNIDPTRWPD----NSVREVEL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 553 AYKLDVNEFRGNRNVQLLIQHLWP 576 >gi|163803383|ref|ZP_02197259.1| ssDNA exonuclease RecJ [Vibrio sp. AND4] gi|159172845|gb|EDP57687.1| ssDNA exonuclease RecJ [Vibrio sp. AND4] Length = 579 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 180/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L D+A + QAI ++I+I Sbjct: 18 SIPAILKRIYINRGITD---VAQLETSARGLHSY-QQLGGIDQAVELLFQAIKGQKRIII 73 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIDGVRYAKEHGITVLVTDHHLPGQVLPDVDAMVNPNLDSCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKQNWFVQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL++++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMANNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L ++ Q +V+ WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSQLPHGLVLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+K+KF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKDKFHRPVIAFADGGEGTIKGSCRSIVGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + V DG L ++ + + L S GP+G Sbjct: 434 TIKEQDFERFSRLFDDVVKRELDEAALKGVIMSDGELKPEEFSMQIAEQLRSGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P PVF K+ ++V HL++ E + + IAF + + + Sbjct: 494 PEPVFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNIDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMIDHIE 577 >gi|268591700|ref|ZP_06125921.1| single-stranded-DNA-specific exonuclease RecJ [Providencia rettgeri DSM 1131] gi|291312659|gb|EFE53112.1| single-stranded-DNA-specific exonuclease RecJ [Providencia rettgeri DSM 1131] Length = 577 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 180/565 (31%), Positives = 275/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P+++ R+ +R ++ L L+ D L+ DKA + +A+ E I I Sbjct: 21 GLPELLQRIYQHRGITD---ITQLERKAANLL-DYRTLSGVDKALPLLYRALNEHEAITI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL +R L N N +P+R +GYG P ++E+ G LIITV Sbjct: 77 VGDFDADGATSTALAIRALKSMGYRNINYIVPNRFENGYGLTPLVVEEARKRGTNLIITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S++ + A G++VI+ DHH A A++NPN + L GV F Sbjct: 137 DNGISSHEGVAVANQYGMNVIITDHHLPGETLPAADAIINPNLNECCFASKSLAGVGVTF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ +L LDLVAL TV DVVPL NR V +GL R Sbjct: 197 YLMSALRAYLRQQGWFVQQGLAEPNLAEYLDLVALGTVADVVPLDTNNRILVHQGLNRVR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+KALIE + A + G+ +GP +NA GR+ + ++ LL++DD Sbjct: 257 AGRCCAGIKALIEVSKRDLPRLVANDFGFALGPRLNAAGRLDDMSVSIELLLTDDMAYAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA +LD LNQ RR +E+ M ++A + + Q + + + WH G+VG+LA+R Sbjct: 317 ELANELDGLNQTRREIEAGMQQEALVLFNQFEYGESQLPNGLAIYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE++ RP A + DG GSGRSI+G + + + GI+ K GGHAMAAGLT Sbjct: 377 IKEQYHRPVIAFAPAGDGLLKGSGRSIQGVHMRDALERLNTLQPGIMQKFGGHAMAAGLT 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F F+ +V + DG L+ + + +++ +GP+G P Sbjct: 437 LHVEQFDAFKHHFELLMGELVQPEQLAGIIWSDGELSRNEFCLETAELIRESGPWGQAFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L AI F + + + K+ Sbjct: 497 EPIFDGE-FQLLQQRLVGERHLKLMLEPINGGPMLDAIMFNIDVRRWPD----NSIKKAK 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN +RG K QL + P Sbjct: 552 IAFKLDVNEYRGQKNVQLMIEHIWP 576 >gi|288933628|ref|YP_003437687.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella variicola At-22] gi|290511306|ref|ZP_06550675.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp. 1_1_55] gi|288888357|gb|ADC56675.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella variicola At-22] gi|289776299|gb|EFD84298.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp. 1_1_55] Length = 577 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 181/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P LT +KA + +A I++ Sbjct: 21 DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHEAFEKGLHIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDARGIAAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + +WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSSDTLPGGLAMYHPQWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L A+ +++ + ML AGP+G P Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAATEMSMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSIWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576 >gi|109900013|ref|YP_663268.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoalteromonas atlantica T6c] gi|109702294|gb|ABG42214.1| exonuclease RecJ [Pseudoalteromonas atlantica T6c] Length = 572 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 284/565 (50%), Gaps = 19/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +I + ++ +R ++ + L S + L+ ++ D A + A+ +I+I Sbjct: 17 SINPTLKQIYASRGITSEQQ---LERSAKALLHY-KDMSGVDTAVSILADALAKGRRIII 72 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL M L N + +P+R GYG +P +++ +GAQ+I+TV Sbjct: 73 VGDFDADGATSTALSMLALGMMGSKNHDYLVPNRFNFGYGLSPQIVDVAHEQGAQVIMTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + ++ A GI V++ DHH A A+VNPN+ + +L GV F Sbjct: 133 DNGIACFAGVERAKELGITVLITDHHLAAESLPVADAIVNPNQPNCSFMSKNLAGVGVAF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LRQ + N +L LLD+VAL TV DVVPL NR V +GL+ R Sbjct: 193 YLMLALRAHLRQIDWFAQNNLAVPNLADLLDIVALGTVADVVPLDENNRILVHQGLLRIR 252 Query: 273 -RQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL++ +LG++IGP +NA GR+ + ++G L++D + + Sbjct: 253 SDKCRPGIQALVDVAGRDKRKMVASDLGFVIGPRLNAAGRLDDMSMGIECLLTDSDYKAK 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV-EGDRWHPGIVGLLAAR 389 +A++LD LN+ RR +E +M ++A + Q + +V +H G++G+LA R Sbjct: 313 QIAVELDSLNRERREIEQSMQQEAVTTLENLQLSEQDMPLGLVLYQADFHQGVIGILAGR 372 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEK+ RP+ A + ++D GS RSI G I ++ G+++K GGHAMAAGL+ Sbjct: 373 IKEKYFRPTIAFAHQDDEILKGSARSIPGVHIRDLLEELGTRYPGVIIKFGGHAMAAGLS 432 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + A + DG + AS++ + +L+ AGP+G G P Sbjct: 433 IEARKLDEFKLRFTQLAEEHLAGKPLAGELISDGEIPASSLTLEFSQLLKDAGPWGQGFP 492 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L R+V HL+M + + AIAF V + + K + + Sbjct: 493 EPLFDGE-FELVEQRIVGQKHLKMMLRMPSGKLIDAIAFNVDT----QIWPNEQCKHVEL 547 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG Q V +P+ Sbjct: 548 AYKLDINEFRGRTSLQFLVEGLNPL 572 >gi|330010995|ref|ZP_08306939.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp. MS 92-3] gi|328534332|gb|EGF60943.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella sp. MS 92-3] Length = 560 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 181/564 (32%), Positives = 280/564 (49%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P LT +KA + A I++ Sbjct: 5 LPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHDAFQKGLHIVVV 60 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++++ GAQ+I+TVD Sbjct: 61 GDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTVD 120 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A GI V+V DHH A A+VNPN D L GV F Sbjct: 121 NGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAFY 180 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 181 LMLALRTFLRDKGWFDARGIPAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRA 240 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 241 GKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 300 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + +WH G+VG+LA+R+ Sbjct: 301 LANELDALNQTRKEIEQGMQAEALTLCQQLERSADTLPGGLAMYHPQWHQGVVGILASRI 360 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 361 KERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLSL 420 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L A+ +++ + ML AGP+G P Sbjct: 421 EEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLAAAEMSMEVAQMLRDAGPWGQMFPE 480 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L R+V HL++ E L IAF V + + + + + + Sbjct: 481 PLFDGR-FRLLQQRLVGERHLKVMVEPVDGGPLLDGIAFNVDTSIWPD----NGVREVQL 535 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 536 AYKLDINEFRGNRSLQLIIDHLWP 559 >gi|157148429|ref|YP_001455748.1| ssDNA exonuclease RecJ [Citrobacter koseri ATCC BAA-895] gi|157085634|gb|ABV15312.1| hypothetical protein CKO_04254 [Citrobacter koseri ATCC BAA-895] Length = 577 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 278/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLGMRSLGCNNISYLVPNRFEDGYGLSPEVVDQAHARGAQMIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ +++A GI V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHTGVEHARALGIPVVVTDHHLPGDTLPDAEAIINPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGITPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEVSNRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSRETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 437 LEEAQFEHFQQRFGELVTEWLDPSLLQGEVVSDGPLSVAEMTMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTACWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576 >gi|313159678|gb|EFR59035.1| single-stranded-DNA-specific exonuclease RecJ [Alistipes sp. HGB5] Length = 588 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 176/596 (29%), Positives = 281/596 (47%), Gaps = 34/596 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RWV Q + I ++A +LV R + + A F PS+ L DP + Sbjct: 5 KRWVVKP-QGDSEAVAKLASVLRISPVLANLLVQRGIDTVEKADKFFKPSLADLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVD 133 + D DKA R+ QA+ N+EKIM++GDYDVDG +VAL+ +FL N YIPDR + Sbjct: 63 MKDMDKAVERVEQAVRNNEKIMVYGDYDVDGCTAVALVYKFLRQIGHKNLMFYIPDRYTE 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ +G LII +DCG + + + YA ++G+D I+ DHH E A A Sbjct: 123 GYGISVKGIDLAARKGVGLIIALDCGIKATEKIVYAKSKGVDFIICDHHLPAEEIPRAVA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P R+D L GV F ++ + R + LLDL+ ++ D+ Sbjct: 183 VLDPKRVDCSYPFDELSGCGVGFKLVQAYAQKNRI-----PFEQISPLLDLLVVSIASDI 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VPL+ NR GL R+ + GL ++I+ IT +++ + IGP INA GR+ Sbjct: 238 VPLVDENRILAHFGLKDLNREPSKGLLSIIKICGLDKHNITIDDIVFKIGPRINAAGRMR 297 Query: 313 ESNL-----------GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 LLI + +D NQ+R+ ++ ++ ++A + + Sbjct: 298 MDENDENASPSGGHAAVELLIEGNESIAAEFGNVIDAYNQDRKSIDRSVTQEAHDFI-ER 356 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 +++Q V+ +W GIVG++A+RL E + RP+ ++ +G GS RS+ GFD+ Sbjct: 357 NPEMKQLKSTVIYNPKWMKGIVGIVASRLIETYYRPTVVLT-MSNGFVTGSARSVPGFDL 415 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + V +L GGH AAGLT+ N F + + + P ID Sbjct: 416 YQAVESC--SDLLENFGGHMYAAGLTMRPENVDEFTRRFNAYVEENIDPQMLMPQVDIDS 473 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF--ESQ 536 L S + A L P+G GN PVFA ++V + HL+M + Sbjct: 474 ELLFSDITPAFRKDLNRFQPFGPGNTAPVFATYGVSNHGDAKLVGVECEHLRMDLIQRQK 533 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +Q+IAF+ + G+ + V + N++RG+ QLR+ D PV Sbjct: 534 PNTKIQSIAFQQPT----HYEWVRSGRPIDVCYQIVENHYRGTVTTQLRIKDIKPV 585 >gi|315179160|gb|ADT86074.1| ssDNA exonuclease RecJ [Vibrio furnissii NCTC 11218] Length = 579 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 180/568 (31%), Positives = 279/568 (49%), Gaps = 25/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP ++ R+ +NR VS L + + L L D A + +AI ++I++ Sbjct: 19 IPPLLRRIYLNRGVSSVEQ---LEKAAKALHSY-QQLHGIDAAVELLFEAIKQQKRIIVV 74 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ + A++I+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVEQALAMNAEMIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + +++A G+ V+V DHH +E A A+VNPN L GV F Sbjct: 135 NGVSSIEGVRFAKQHGLSVLVTDHHLPGAELPEADAMVNPNLQQCAFPSKALAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 195 LMMALCVYMRRCGWFAEQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254 Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 255 GKARPGIQALIEVAKRDARKLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAARR 314 Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E A + L D + +V+ WH G++G+LA+R Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAFCERLQFGKDTELPHGLVMFQRDWHQGVIGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GS RSI G + + GI++K GGHAMAAGLT Sbjct: 375 IKEQFHRPVIAFADGGDGLIKGSCRSIPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E NF R F + + + V DG L ++ + +ML + GP+G P Sbjct: 435 IEEHNFERFSRLFDEVVRQDLDDALLKGVILTDGELAPEEFSMHVAEMLRAGGPWGQAFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 PVF K+ ++V HL++ E + + IAF V + + Sbjct: 495 EPVFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 549 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL V Sbjct: 550 KTVRLAYKLDINEFRGNQSLQLMVDHLE 577 >gi|313893185|ref|ZP_07826762.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. oral taxon 158 str. F0412] gi|313442538|gb|EFR60953.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella sp. oral taxon 158 str. F0412] Length = 660 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 185/589 (31%), Positives = 293/589 (49%), Gaps = 24/589 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 I RW G + ++ + IVA++++NR++ +D + FL ++ L+ DP Sbjct: 2 IKKKRWRLCEGDREKENI--LIRELGVNPIVAKLMMNRHIDVDEGRQFLQGTLSDLL-DP 58 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D A + + I + + I+I+GDYDVDG + +++ RFL + YIP+R Sbjct: 59 FTLKGMDVAVSLVQETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 118 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N +E I G L+ITVDCG +SYD ++ ++ ID+I+ DHH A Sbjct: 119 EGYGLNLEALEHLIERGTALVITVDCGISSYDIVEAVRDR-IDMIITDHHTAPDMIPRAK 177 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N + D +L GV F + ++ L LD+VAL TV D Sbjct: 178 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR V GL + N G+K LI+ IT+ ++G+ + P +NA GR+ Sbjct: 231 VVPLVGENRIIVKAGLEKMNNRPNLGIKKLIDVAGLHERTITSGHIGFTLAPRLNAAGRV 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL++DD+ E +A +L+ N+ R+ +E + E A V Q V Sbjct: 291 THATRAVELLVTDDADIAEAIAEELNDTNRERQELERNIHELARIDVANQGHKA--DYVT 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV G+ WHPG++G++A+RL E+F +P+ IS + G G GS RSI+GF++ + E Sbjct: 349 VVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNMYDALKSC--E 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 IL++ GGH+ AAG +++ L + ++ IV A PV ID L +++ Sbjct: 406 DILLQFGGHSAAAGFSIDANRIDELRERLTEYCKKIVTAEEYIPVVAIDAELPVDDIDVD 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +ID + + PYG N PVFA +Q I ++ H ++ F + + TL AIA+ Sbjct: 466 IIDRVSALEPYGMANSTPVFAVMEATVQDIMLMGQLKNHCKVIFATSNG-TLDAIAWNRP 524 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 F G + V L N W+G QL + P+ Sbjct: 525 DL----FKSIFVGSVVKVAFSLQKNEWQGMVSPQLMIQAIEPLNEEPIK 569 >gi|167550074|ref|ZP_02343831.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324703|gb|EDZ12542.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 577 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|146276882|ref|YP_001167041.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides ATCC 17025] gi|145555123|gb|ABP69736.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides ATCC 17025] Length = 583 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 248/599 (41%), Positives = 339/599 (56%), Gaps = 36/599 (6%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S +G RWV +E A A+ Q +P + R LV R VS A+ FL P Sbjct: 7 RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVSATEAESFLAP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L+PDPL L D AA R++QA+ EKI IF DYDVDG +S AL++ +L A Sbjct: 66 ALRDLLPDPLTLKDMAPAAARLLQAVARREKIAIFADYDVDGGSSAALLIVWLRAMGRAA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M+ LI+ VDCG+ S++ + AT G DV+V+DHH Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAA-AHDLILCVDCGTLSHEPIAAAT--GADVVVLDHHL 182 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ GHLCAA VVFL+LV R LR + DL+++LD Sbjct: 183 GTETLPPALAVVNPNRQDEDGSLGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PL G+NRA V +GL V R+ PGL AL + ++S LG+++GP Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVSRMNSAPNCYALGFLLGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL +DD +E + LA +LD LN RR +E+ + E+A A+ + Sbjct: 301 RVNAGGRIGQADLGARLLATDDPREAQALAERLDQLNTERREIEARVREEALAQAEARGT 360 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ G+ WHPG+VG++AARLKE RP+ I E+G G GSGRSI G D+G Sbjct: 361 SG---PLVWAAGEGWHPGVVGIVAARLKEATNRPAIVIG-LENGIGKGSGRSISGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 V EG+L+KGGGH MAAGLTVE G + A ++DGVL Sbjct: 417 AVHRVAHEGLLLKGGGHRMAAGLTVEEGRLGAAMERLSDLLARQGAASAGPADLRLDGVL 476 Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 SA A ++ +E FA + ++ R + HL++ Sbjct: 477 MPSAATAAFVEQIESAGPYGAGAAAPR------------FALASQRVV-TRRMGEKHLRL 523 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T + L+A+AF + PLG L H+ G L ++ W GS R Q+R+ DA+ Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGLFHLAGRLEIDTWGGSARVQMRLEDAA 581 >gi|260911816|ref|ZP_05918383.1| recombination protein J [Prevotella sp. oral taxon 472 str. F0295] gi|260634027|gb|EEX52150.1| recombination protein J [Prevotella sp. oral taxon 472 str. F0295] Length = 582 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 165/587 (28%), Positives = 282/587 (48%), Gaps = 22/587 (3%) Query: 16 FRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 FRW+ + A + +K + I+A++L+ R ++ + AK F P + ++ +P Sbjct: 3 FRWIYEPLSPQLQSAAKELGEKLNMSTILAQLLIRRGITTESAAKRFFRPQLNDII-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+IM++GDYDVDG SVAL+ +FL N YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERIMVYGDYDVDGCTSVALVYKFLQQFYSNIEYYIPDRYEE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ + G +L+I +DCG + + + YA GID I+ DHH E PA A Sbjct: 122 GYGVSRKGIDYAYHSGVKLVIILDCGIKAINEIAYAKTLGIDFIICDHHVPDEEMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HL GV F + + N L+ +LDL A++ D+ Sbjct: 182 ILNPKRPDDNYPFKHLSGCGVGFKFMQAFAK-----NNGIPFSRLIPMLDLCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V + NR GL + + GLKA+I+ +S I+ ++ + IGP INA GR+ Sbjct: 237 VQVEEENRILAFHGLKQLNQNPSLGLKAIIDICGLSGKEISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A ++ N+ R+ ++ M E+A +++ + + ++ S IV Sbjct: 297 SGKESVSLLVEKDYNVALQSAKHINEYNEQRKDIDKQMTEEA-NQIVARLESQKKQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ I+ + GS RS+ GFDI + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVIT-RDGDFATGSARSVMGFDIYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT+ + R + F ++ + + T + ID +++ + + Sbjct: 413 LLINFGGHTYAAGLTMRWDDVPRFVERFHQYVDSHILPEQTEAILHIDEMIDFKDITKKM 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GN P F N + +VV H+++ + S + IAF Sbjct: 473 HHDLKKFSPFGPGNLKPRFCTNNVYDYGTSKVVGREQEHIKLELIDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N +R + QL++ D E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEDNVFRHN-NIQLQIEDIRLTENE 574 >gi|206577627|ref|YP_002236651.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella pneumoniae 342] gi|206566685|gb|ACI08461.1| single-stranded-DNA-specific exonuclease RecJ [Klebsiella pneumoniae 342] Length = 577 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 181/565 (32%), Positives = 281/565 (49%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P LT +KA + +A I++ Sbjct: 21 DLPPLLQRLYASRGVRSAQE---LERSVKGMLP-WTQLTGVEKAVEMLHEAFEKGLHIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGETLPAAEAIVNPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDARGIAAPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + +WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCQQLERSSDTLPGGLAMYHPQWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L A+ +++ + ML AGP+G P Sbjct: 437 LEEARFEEFQQRFGELVTEWLDPSLLQGEVVSDGPLAATEMSMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSIWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 552 LAYKLDINEFRGNRSLQLIIDHLWP 576 >gi|257887529|ref|ZP_05667182.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,141,733] gi|257823583|gb|EEV50515.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,141,733] Length = 765 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 275/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQKAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I +G QLIITVD G DA+ YA G+DVI+ DHH++ + AYA Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E I E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + E+A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRS+E ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F ++ +++ + HL+ + S+ L A+AF Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E L+ + + V G L +N W G K+ QL V D + Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558 >gi|260599232|ref|YP_003211803.1| ssDNA exonuclease RecJ [Cronobacter turicensis z3032] gi|260218409|emb|CBA33494.1| Single-stranded-DNA-specific exonuclease recJ [Cronobacter turicensis z3032] Length = 553 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 177/561 (31%), Positives = 276/561 (49%), Gaps = 20/561 (3%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + R+ +R V L S++ L+P L D A + A+ +I++ GD+D Sbjct: 2 LRRLYASRGVRGAQE---LERSVKGLLP-WQQLCGIDDAVAMLHDALREGLRIIVVGDFD 57 Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 DGA S AL + L N +P+R DGYG +P ++++ GAQ+I+TVD G + Sbjct: 58 ADGATSTALSVLALRALGGSNVAYLVPNRFDDGYGLSPEVVDQAHARGAQMILTVDNGIS 117 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 S+ + A GI V+V DHH A A++NPN + L GV F +++ Sbjct: 118 SHAGVTRAHELGIPVLVTDHHLPGDTLPAAGAIINPNLAECTFPSKSLAGVGVAFYLMLA 177 Query: 222 IYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + LR +L LDLV+L TV DVVPL NR + +GL R + Sbjct: 178 LRAHLRSVGWFTEKGIPEPNLAEFLDLVSLGTVADVVPLDANNRILIWQGLSRIRAGKCR 237 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 PG++AL+E N +TA +LG+ +GP +NA GR+ + ++G LL+ D+ E MLA + Sbjct: 238 PGIRALLEIANREAHRLTASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARMLANE 297 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ-QASVIVVEGDRWHPGIVGLLAARLKEKF 394 LD LNQ R+ +E M +A + S + + WH G+VG+LA+R+KE+F Sbjct: 298 LDALNQTRKEIEQGMQAEALTLCQQLERSGEALPSGVAIFHPEWHQGVVGILASRIKERF 357 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVN 452 RP A + +G GSGRS++G + + G+++K GGHAMAAGL++E Sbjct: 358 HRPVIAFAPAGEGILKGSGRSVQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEAR 417 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 F F + ++ + + DG L + + + +ML AGP+G P P+F Sbjct: 418 FPEFQARFAELVNDWLDPAMLQGEIWSDGALAPQEMTLEVAEMLRDAGPWGQMFPEPLFD 477 Query: 513 FPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 ++ R+V HL++ E L IAF V T + + + + L Sbjct: 478 GR-FRILQQRLVGERHLKLMLEPVGGGPLLDGIAFNVDTTCWPD----PGVREVELAYKL 532 Query: 572 CVNYWRGSKRCQLRVLDASPV 592 VN +RG++ QL + PV Sbjct: 533 DVNEFRGNRSLQLIIDHLWPV 553 >gi|293378804|ref|ZP_06624961.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium PC4.1] gi|292642597|gb|EFF60750.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium PC4.1] Length = 765 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 275/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I +G QLIITVD G DA+ YA G+DVI+ DHH++ + AYA Sbjct: 123 GYGPNRSVYQEKIEKGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E I E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGIKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + E+A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRS+E ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSVEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F ++ +++ + HL+ + S+ L A+AF Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQVANVKKIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E L+ + + V G L +N W G K+ QL V D + Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAV 558 >gi|329957247|ref|ZP_08297767.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides clarus YIT 12056] gi|328522960|gb|EGF50063.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides clarus YIT 12056] Length = 571 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 165/582 (28%), Positives = 273/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLLGQEGINRA-LAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 +W L A + Q+ I ++ +LV R ++ A K F P + L DP + Sbjct: 4 KWNYLPITSDQAEASQRLAQELGISPVLGELLVERGITTAAAAKKFFRPQLPDLY-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSTKGVDYAAETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A +++ + + + IV+ Sbjct: 298 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NQIVAELEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F++F + T+ V I+ ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTERFEEFVSQHILPEQTSAVIDINAEIDFRDITPKFC 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF N + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570 >gi|269798273|ref|YP_003312173.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula DSM 2008] gi|269094902|gb|ACZ24893.1| single-stranded-DNA-specific exonuclease RecJ [Veillonella parvula DSM 2008] Length = 661 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 185/589 (31%), Positives = 291/589 (49%), Gaps = 24/589 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP 72 I RW G + ++ + IVA+++VNR++ +D + FL ++ L+ DP Sbjct: 3 IKKKRWRLCEGDREKENI--LIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLL-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D A +++ I + + I+I+GDYDVDG + +++ RFL + YIP+R Sbjct: 60 FTLKDMDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLGADVTYYIPERQS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N ++ I G L+ITVDCG +SYD ++ ++ I++I+ DHH A Sbjct: 120 EGYGLNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDR-INMIITDHHTAPDVIPRAK 178 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N + D +L GV F + ++ L LD+VAL TV D Sbjct: 179 AVINHKQKDCPYKDKNLSGVGVAFKLCQALW-------LTKHGEWYLDDLDIVALGTVAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR V GL N G+ LI+ IT+ ++GY + P +NA GR+ Sbjct: 232 VVPLVGENRIIVKSGLEKMNSYPNLGINKLIDVAGLHERTITSGHIGYTLAPRLNAAGRV 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL++DD+ E +A +L+ N+ R+ +E + E A V Q V Sbjct: 292 THATRAVELLVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKA--DYVT 349 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 +V G+ WHPG++G++A+RL E+F +P+ IS + G G GS RSI+GF+I + E Sbjct: 350 IVAGEEWHPGVIGIVASRLVEEFYKPTLVISIHD-GVGKGSCRSIDGFNIYDALKSC--E 406 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 IL++ GGH+ AAG +++ L K+ +V A PV ID L +++ Sbjct: 407 DILLQFGGHSAAAGFSIDANRIDELRYRLTKYCKEVVTAEEYIPVVAIDAELPVDDIDVD 466 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +ID + PYG N PVFA +Q I ++ H ++ F + + TL AIA+ Sbjct: 467 IIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNG-TLDAIAWNCP 525 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 F G + V L N W+G QL + P+ Sbjct: 526 DL----FRSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPLTEEPIK 570 >gi|327403455|ref|YP_004344293.1| single-stranded-DNA-specific exonuclease RecJ [Fluviicola taffensis DSM 16823] gi|327318963|gb|AEA43455.1| single-stranded-DNA-specific exonuclease RecJ [Fluviicola taffensis DSM 16823] Length = 574 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 167/586 (28%), Positives = 275/586 (46%), Gaps = 28/586 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + + + I+A +L RN++ + F P I L DP + Sbjct: 3 KHWFIKQVPSD-EKIQVVIDNLKVSPIMASLLAQRNLTSLPQIRSFFTPEISSLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + ++A R+ A+ N E+I+IFGDYDVDG +VAL+ L + + + YIPDR +G Sbjct: 61 MLNMNRAVDRLESAVQNQERILIFGDYDVDGTTAVALVYSVLKEFT-SVDFYIPDRYEEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ + G L+I +DCG + + YA +G+DVI+ DHH ++P + Sbjct: 120 YGLSYQGIDLALKNGCSLMIALDCGIKEIEKVAYAREKGLDVIICDHHN-PGPKVPDGII 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + D LC GV F ++ + +D L LDLVA+A D+V Sbjct: 179 LDPKQEDCAYPFKELCGCGVGFKLMQAWFSKTGKD-----ATTLFQYLDLVAIAIGADIV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR +G+ + G+ AL+E+ S P+ N+ + I P INA GR+ Sbjct: 234 PVTGENRILCKQGIQMLNENPRAGILALVEQAKRSFPLDLSNVVFTIAPRINAAGRLKSG 293 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL+S+ +E +++A+++D N RR++++ + E+A + + + S VV Sbjct: 294 SRAVELLLSETPKEAQLIALEIDEYNSERRILDAQITEEALDLIAQDDLFLSRKST-VVF 352 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WH G+VG++A+RL E RP+ ++ E G+ GS RS+ GF++ ++ E +L Sbjct: 353 QSDWHKGVVGIVASRLIEHHYRPTIVLT-ENKGEATGSARSVSGFNVYDAITSC--EHLL 409 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV------ 488 + GGH AAGL++ N + F + + L ID + S + Sbjct: 410 TQYGGHQHAAGLSLPLENVASFREHFDSYVQKNIQPLDEVEELVIDLEIGLSELFLAGES 469 Query: 489 ---NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAI 544 L MLE P+G GN PVF N R++ AHL+ S L AI Sbjct: 470 ALQIPRLYKMLEQMEPFGPGNDKPVFCAKNMYADKTRILKEAHLKFDLVDPISRIQLSAI 529 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + + + + G L N W QL++ D Sbjct: 530 GFNMAD----KADLIAAGCAFDCAFTLEKNVWNNRATLQLQIRDVR 571 >gi|261342295|ref|ZP_05970153.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter cancerogenus ATCC 35316] gi|288315636|gb|EFC54574.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter cancerogenus ATCC 35316] Length = 577 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 175/566 (30%), Positives = 277/566 (48%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 21 DLPPLLKRLYASRGVKSAED---LERSVKGMLP-WQQLSGVEKATEMLYNAFREGTRIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLSLRALGCDNVAYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A GI V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVDRAHALGIPVLVTDHHLPGDTLPDAEAIINPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +LR +L LDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTLLRDKGWFESRGIAVPNLAEYLDLVALGTVADVVPLDTNNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPLKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSGDTLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLHTLHPNLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L A+ + + ML AGP+G P Sbjct: 437 LEEAKFDEFQRLFGEMVTAWIDPALLHGEVVSDGELPAADMTMETAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDGR-FRLLQQRIVGERHLKVMVEPVGGGPLLDGIAFNVDTSVWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + + P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|322831508|ref|YP_004211535.1| single-stranded-DNA-specific exonuclease RecJ [Rahnella sp. Y9602] gi|321166709|gb|ADW72408.1| single-stranded-DNA-specific exonuclease RecJ [Rahnella sp. Y9602] Length = 577 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ + R V+ L +R ++P L D A + +A+ +I+I Sbjct: 22 LSPLLRRLYLARGVTQSQE---LERGVRGMLPY-QQLDGIDTAVALLQKALAERLRIIIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ + GA+LI+TVD Sbjct: 78 GDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V++ DHH A A++NPN + L GV F Sbjct: 138 NGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ N +L LDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G++AL+E + A +LG+ +GP +NA GR+ + ++G LL+S+D + Sbjct: 258 GKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA LD LNQ RR +E M +A A + + + WH G+VG+LA+RL Sbjct: 318 LASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASRL 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRSI G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F D F + V DG L+A + I +ML GP+G P Sbjct: 438 EESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDGGPWGQAFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ +++ HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGR-FRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPD----SSIREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYRLDINEFRGNRSVQLIIEHLWP 576 >gi|149377063|ref|ZP_01894813.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter algicola DG893] gi|149358599|gb|EDM47071.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter algicola DG893] Length = 577 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 176/566 (31%), Positives = 292/566 (51%), Gaps = 21/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ D + +++ L P+ L D+A + +AI + +++++ Sbjct: 21 NLPPLLRRLYAARGVTSDDQLSY---TLKHL-ASPMDLRGVDRAVALLAEAITDQQRVLV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEG--AQLII 154 GD+D DGA S A+ M L + + + +P R DGYG P ++ + +EG L++ Sbjct: 77 LGDFDADGATSTAVAMLGLGMLGLNDIDFRVPSRFSDGYGLTPGIIHRLRDEGALPDLLV 136 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G ++ + ++ A GI V+V DHH A A+VNPN+ + GV Sbjct: 137 TVDNGISAVEGVRVARELGIRVVVTDHHLAGETLPDADAIVNPNQPGCPFLSKNAAGVGV 196 Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +F VL + + LR+ +P +L +LLDLVAL TV DVVPL NR +V +GL R+ Sbjct: 197 MFYVLTALRKHLREQGLLPEPQPNLGNLLDLVALGTVADVVPLDHNNRIFVEQGLRRIRQ 256 Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG+ AL+E I++ +LG+++GP +NA GR+ + ++G L+SD E + Sbjct: 257 GEARPGILALLEVAGRDHTEISSTDLGFVVGPRLNAAGRLDDMSVGIACLLSDSRDEAQR 316 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390 LA +LD N+ RR +E M QA+ + + DI+ + WH G++G+LAAR+ Sbjct: 317 LARELDTFNRERRTIEKDMKTQAQDLLASMSLDIEGLPWGLALFDTDWHQGVIGILAARI 376 Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +E+ RP+ A + +++G+ GS RSI G I +++ A G++ K GGHAMAAG+T Sbjct: 377 REQTHRPTIAFAPDDNGEDIKGSARSIPGLHIRDVLAAVDARHPGMMKKFGGHAMAAGMT 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + R + D F + + + A DG L+ +++ +L+ AGP+G P Sbjct: 437 LSRGDLDAFSDAFDRAVRDTLRAEDLEAAITTDGPLSPDELHLETATLLKRAGPWGQHFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F N ++ S R+V HL++ + + + + IAF G + Sbjct: 497 EPLFDG-NFRVVSQRIVGENHLKLVLQPEEGGDIIDGIAFNT-----GPEVPDYTKTGAR 550 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 V N +RG QL V P+ Sbjct: 551 VVYKPDANTFRGRTNLQLMVDYLEPL 576 >gi|161615989|ref|YP_001589954.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365353|gb|ABX69121.1| hypothetical protein SPAB_03789 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 577 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---HELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|78222077|ref|YP_383824.1| RecJ exonuclease [Geobacter metallireducens GS-15] gi|78193332|gb|ABB31099.1| exonuclease RecJ [Geobacter metallireducens GS-15] Length = 578 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 175/578 (30%), Positives = 279/578 (48%), Gaps = 18/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW A I ++ +A +L NR + + A+ FL+ S+ + DP + Sbjct: 7 KRWELRT--NDKEAAQRIASDSSVDPFLAALLANRGIADGESARRFLSSSLGD-VSDPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L ++A R+ A E + ++GDYDVDG + AL++ F + +IP R+ +G Sbjct: 64 LKGMEEAVARLCAARARRETVCVYGDYDVDGITATALLVSFFRAVGIRCFYHIPKRLEEG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + K AQ+++TVDCG + + G+D+++ DHH A A+ Sbjct: 124 YGLSVDGLRKVAE-QAQVVVTVDCGVNAVAEAELCLTLGVDLVITDHHTPGPAIPKACAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCD 252 +NP + L GV F V+V + LR + +L LDLVAL T+ D Sbjct: 183 INPLQPGCSYPFKSLAGVGVAFNVMVALRGRLRAEGAFAGGNGPNLREYLDLVALGTIAD 242 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 VVPL+G NR +V GL G+KAL + ++ ++ +G+ + P +NA GR+ Sbjct: 243 VVPLVGENRIFVKYGLRELSASSRVGVKALKDVAGVTGAVSCGAVGFRLAPRLNAAGRME 302 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ G LL+ + +A +LD N R+ +E +L A +V ++ IV Sbjct: 303 DAAAGVELLLETEPGRAAAIAAELDANNDERQALERQILTDALGRVQGN-TAMEGRKSIV 361 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WHPG++G++A+R+ + F RP+ I+ +E G G GSGRSI GF + + ++ Sbjct: 362 LASAAWHPGVIGIVASRMVDLFHRPTVLIALQE-GNGRGSGRSIPGFHLYDALGACADQ- 419 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LVK GGH AAGL+++ D F++ A ++ A PV ++D VL+A V L Sbjct: 420 -LVKFGGHRYAAGLSIDEPTLELFVDRFEEVAAGLLSADDLIPVLRVDAVLSAQQVTAGL 478 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 D L S P+GAGNP P+F + ++ V HL++ S T AI F + Sbjct: 479 ADALSSLEPFGAGNPEPLFVLKDMEIVRRWAVRGNHLKVRL-SGGGFTFDAIGFNLATKE 537 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S + + L N W G K QL + D Sbjct: 538 ------DSLPDLVDIVFTLGWNEWNGRKTLQLSLKDIR 569 >gi|260771234|ref|ZP_05880161.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio furnissii CIP 102972] gi|260613831|gb|EEX39023.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio furnissii CIP 102972] Length = 579 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 180/568 (31%), Positives = 279/568 (49%), Gaps = 25/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP ++ R+ +NR VS L + + L L D A + +AI ++I++ Sbjct: 19 IPPLLRRIYLNRGVSSVEQ---LEKAAKALHSY-QQLHGIDAAVELLFEAIKQQKRIIVV 74 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ + A++I+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVEQALAMNAEMIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + +++A G+ V+V DHH +E A A+VNPN L GV F Sbjct: 135 NGVSSIEGVRFAKQHGLSVLVTDHHLPGAELPAADAMVNPNLQQCAFPSKALAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 195 LMMALCVHMRRCGWFAEQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254 Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 255 GKARPGIQALIEVAKRDARKLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAARR 314 Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E A + L D + +V+ WH G++G+LA+R Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAFCERLQFGKDTELPHGLVMFQRDWHQGVIGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GS RSI G + + GI++K GGHAMAAGLT Sbjct: 375 IKEQFHRPVIAFADGGDGLIKGSCRSIPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E NF R F + + + V DG L ++ + +ML + GP+G P Sbjct: 435 IEEHNFERFSRLFDEVVRQDLDDALLKGVILTDGELAPEEFSMHVAEMLRAGGPWGQAFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 PVF K+ ++V HL++ E + + IAF V + + Sbjct: 495 EPVFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 549 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL V Sbjct: 550 KTVRLAYKLDINEFRGNQSLQLMVDHLE 577 >gi|332558849|ref|ZP_08413171.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides WS8N] gi|332276561|gb|EGJ21876.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides WS8N] Length = 583 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 237/599 (39%), Positives = 337/599 (56%), Gaps = 36/599 (6%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S +G RWV +E A A+ Q +P + R LV R V A+ FL P Sbjct: 7 RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L+PDPL L D AA R++QA+ E+I IF DYDVDG +S AL++ +L A Sbjct: 66 ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRTA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M+ LI+ VDCG+ S++ + A +G DV+V+DHH Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ GHLCAA VVFL+LV R LR + DL+++LD Sbjct: 183 GAETLPPALAVVNPNRQDEDGALGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PL G+NRA V +GL V R+ PGL AL + + + + LG+++GP Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL ++D +E + LA +LD LN RR +E+ + E+A A+ + Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ + WHPG+VG++AARLKE RP+ I E+G G GSGRSI G D+G Sbjct: 361 SG---PLVWAAAEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTVE + + A ++DG+L Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476 Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 SA ++ ++ FA + ++ R + H+++ Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T + L+A+AF + PLG L R H+ G L ++ W GS R Q+R+ DA+ Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581 >gi|221639835|ref|YP_002526097.1| Single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides KD131] gi|221160616|gb|ACM01596.1| Single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides KD131] Length = 583 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 237/599 (39%), Positives = 336/599 (56%), Gaps = 36/599 (6%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S +G RWV +E A A+ Q +P + R LV R V A+ FL P Sbjct: 7 RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L+PDPL L D AA R++QA+ E+I IF DYDVDG +S AL++ +L A Sbjct: 66 ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRTA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M+ LI+ VDCG+ S++ + A +G DV+V+DHH Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ GHLCAA VVFL+LV R LR + DL+++LD Sbjct: 183 GAETLPPALAVVNPNRQDEDGSLGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PL G+NRA V +GL V R+ PGL AL + + + LG+++GP Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNGYALGFLLGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL ++D +E + LA +LD LN RR +E+ + E+A A+ + Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ + WHPG+VG++AARLKE RP+ I E+G G GSGRSI G D+G Sbjct: 361 SG---PLVWAAAEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTVE + + A ++DG+L Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476 Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 SA ++ ++ FA + ++ R + H+++ Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T + L+A+AF + PLG L R H+ G L ++ W GS R Q+R+ DA+ Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581 >gi|170725260|ref|YP_001759286.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella woodyi ATCC 51908] gi|169810607|gb|ACA85191.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella woodyi ATCC 51908] Length = 574 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 167/563 (29%), Positives = 281/563 (49%), Gaps = 21/563 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ ++ +R + + +++ L+ P + +AA I AI I+I Sbjct: 20 LSPLLKQIYASRGSTAADC----DLALKRLLR-PDTMMGLPRAAEIIADAIMAQRSILIM 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S + + L + IP+R GYG +P ++ ++GA+L+ITVD Sbjct: 75 GDFDADGATSTCVCLLALKMMGATRVDYLIPNRFDFGYGLSPEIVAVAQDKGAELLITVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + ++ A + G+ V++ DHH A A+VNPN++D + GV F Sbjct: 135 NGISSIEGVEAAKSLGMQVVITDHHLPGKTIPNADAIVNPNQVDCSFASKSIAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LR N +L LLD+VAL TV DVV L G NR V GL R Sbjct: 195 LMSALRAELRSRNWYQEQGIAEPNLAQLLDIVALGTVADVVALDGNNRILVEAGLQRVRA 254 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+ AL+E + I A + G+ +GP +NA GR+ E +LG L+ DD Sbjct: 255 GRCRPGITALLEVAKRNPSRIVASDFGFAVGPRLNAAGRLDEMSLGVETLLCDDMMTARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E+ M ++A + + ++ + I + + WH G++G+LA+R+ Sbjct: 315 MASELDGLNAERRDLEADMQQEALKSLEKLELNEAELPWGIALFKEDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 K+++ RP A + +G+ GS RSI+G + ++ + G+++K GGHAMAAGL++ Sbjct: 375 KDRYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLSL 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 +F + + + ++ T DG L + + + L +AGP+G P Sbjct: 435 LEKDFYKFEQAYDEGVRELLKPEQLTGEMTTDGELTPDEMTLPMAWELRNAGPWGQEFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F K+ R+V HL++ E++ + L IAF V T + ++ V Sbjct: 495 PLFDGY-FKVVQQRIVGEKHLKLVLETECGKLMLDGIAFNVDMTTWPDATIEHA----RV 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL V Sbjct: 550 VYKLDVNEFRGNQTLQLMVDQIE 572 >gi|156973277|ref|YP_001444184.1| ssDNA exonuclease RecJ [Vibrio harveyi ATCC BAA-1116] gi|156524871|gb|ABU69957.1| hypothetical protein VIBHAR_00958 [Vibrio harveyi ATCC BAA-1116] Length = 579 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 179/566 (31%), Positives = 280/566 (49%), Gaps = 25/566 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ +NR ++ L S R L L D+A + QAI ++I++ Sbjct: 18 SIPAILKRIYINRGITD---VAQLETSARGLHSY-QQLGGIDQAVELLFQAINEQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ + GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQALELGAEMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVYMRKQNWFAQQGMQEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L ++ + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEKF RP A + +G GS RSI G + + F G+++K GGHAMAAGL Sbjct: 374 RIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGLIIKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + V DG L ++ + + L S GP+G Sbjct: 434 TIKEQDFERFSRLFDEVVKKELDEAALKGVIMSDGELKPEEFSMHVAEQLRSGGPFGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVL 587 K + + L VN +RG++ QL + Sbjct: 549 VKTVRLAYKLDVNEFRGNQSLQLMID 574 >gi|126462820|ref|YP_001043934.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides ATCC 17029] gi|126104484|gb|ABN77162.1| single-stranded-DNA-specific exonuclease RecJ [Rhodobacter sphaeroides ATCC 17029] Length = 583 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 237/599 (39%), Positives = 338/599 (56%), Gaps = 36/599 (6%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S +G RWV +E A A+ Q +P + R LV R V A+ FL P Sbjct: 7 RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L+PDPL L D AA R++QA+ E+I IF DYDVDG +S AL++ +L +A Sbjct: 66 ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRSA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M+ LI+ VDCG+ S++ + A +G DV+V+DHH Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ GHLCAA VVFL+LV R LR + DL+++LD Sbjct: 183 GAETLPPALAVVNPNRQDEDGALGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PL G+NRA V +GL V R+ PGL AL + + + + LG+++GP Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL ++D +E + LA +LD LN RR +E+ + E+A A+ + Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ + WHPG+VG++AARLKE RP+ I E+G G GSGRSI G D+G Sbjct: 361 SG---PLVWAAAEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTVE + + A ++DG+L Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476 Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 SA ++ ++ FA + ++ R + H+++ Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T + L+A+AF + PLG L R H+ G L ++ W GS R Q+R+ DA+ Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581 >gi|77463976|ref|YP_353480.1| single-stranded DNA-specific exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77388394|gb|ABA79579.1| probable single-stranded DNA-specific exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 583 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 238/599 (39%), Positives = 339/599 (56%), Gaps = 36/599 (6%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 +AFLGVE S +G RWV +E A A+ Q +P + R LV R V A+ FL P Sbjct: 7 RAFLGVEASATGRRWVGPSPEED-RLAEAMAQTTRLPLALCRTLVRRGVPASDAESFLAP 65 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 ++R L+PDPL L D AA R++QA+ E+I IF DYDVDG +S AL++ +L +A Sbjct: 66 ALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIFADYDVDGGSSAALLIVWLRALGRSA 125 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 +YIPDRI +GYGPN M+ LI+ VDCG+ S++ + A +G DV+V+DHH Sbjct: 126 TLYIPDRIDEGYGPNVPAMQALAE-AHDLILCVDCGTLSHEPI--AAAKGADVVVLDHHL 182 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 PA A+VNPNR D+ GHLCAA VVFL+LV R LR + DL+++LD Sbjct: 183 GAETLPPALAVVNPNRQDEDGALGHLCAASVVFLLLVEANRRLRAEGV--QGPDLMAMLD 240 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATV DV PL G+NRA V +GL V R+ PGL AL + + + + LG+++GP Sbjct: 241 LVALATVADVAPLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP 300 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NAGGRIG+++LG+RLL ++D +E + LA +LD LN RR +E+ + E+A A+ + Sbjct: 301 RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREEALAQAEARGI 360 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ G+ WHPG+VG++AARLKE RP+ I E+G G GSGRSI G D+G Sbjct: 361 SG---PLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIG-FENGIGKGSGRSIAGVDLGA 416 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + EG+L+KGGGH MAAGLTVE + + A ++DG+L Sbjct: 417 SIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAMERLGELLARQGAAEAGPADLRLDGLL 476 Query: 484 NASAVNIALIDMLE------------SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 SA ++ ++ FA + ++ R + H+++ Sbjct: 477 MPSAATAEFVEQIDSAGPYGAGAAAPR------------FALADQRVT-CRRMGDKHMRL 523 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 T + L+A+AF + PLG L R H+ G L ++ W GS R Q+R+ DA+ Sbjct: 524 TIGGAEGR-LEAVAFGCFDGPLGPLLEGGGAGRFHLAGRLEIDTWGGSARVQMRLEDAA 581 >gi|262089692|gb|ACY24787.1| RecJ single-stranded-DNA-specific exonuclease [uncultured organism] Length = 578 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 178/571 (31%), Positives = 274/571 (47%), Gaps = 25/571 (4%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM-PDPLILTDCDKAARRIVQAIYNSEK 94 + AI ++ R+ R V + L + L P+ +A + A+ K Sbjct: 17 QTAIHPLLQRIYSARGVQHE---RELQYQLANLHKPN---FKGLAEAVSLLADAVVAQAK 70 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 I+I GD+D DGA S AL + L + N + +P+R GYG P ++ + +I Sbjct: 71 IIIVGDFDADGATSSALAVLALRAMGLHNVDFLVPNRFEYGYGLTPEIVAVAAAQQPDVI 130 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 ITVD G +S + + A GI VIV DHH SE A A+VNPN+ HL G Sbjct: 131 ITVDNGISSIEGVLAARELGIAVIVTDHHLPGSELPEADAIVNPNQPGCEFPSKHLAGVG 190 Query: 214 VVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 V+F V+ + LRQ ++ S LDLVAL TV DVVPL NR V +GL Sbjct: 191 VIFYVMNALRAELRQMGWFEESGIAEPNMASFLDLVALGTVADVVPLDYNNRILVAQGLQ 250 Query: 270 VARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R PG+KA++E + + A + G+ +GP +NA GR+ + +LG + L+ + Sbjct: 251 RIRAGVCRPGIKAMLEVSGKQANKLVASDFGFALGPRLNAAGRLDDMSLGIQCLMCESEN 310 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGL 385 +A ++D LN++R+ +E+ M ++A A + Q D + + + WH G++G+ Sbjct: 311 LAREMAAQMDELNRDRKAIETGMQQEAMAMLQKTLQADAESLPWGVCLFDETWHQGVIGI 370 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMA 443 LA+R+K+K+ RP+ + +G+ GS RS+ GF I + A G+L K GGHAMA Sbjct: 371 LASRIKDKYHRPTIVFADVGEGEIKGSARSVPGFHIRDALDAVAARNPGLLQKFGGHAMA 430 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 AG+++ R NF F + V DG L A ++ + L AGP+G Sbjct: 431 AGMSLTRANFAAFAQAFDDEVRRQLTTDDLQAVVVSDGELAAQDFSLQIATQLREAGPWG 490 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES--QDSETLQAIAFRVYGTPLGEFLMQSR 561 P PVF + ++V + HL+MT Q + AIAF + + Sbjct: 491 QHFPEPVFDGE-FYVLQQKLVGVKHLKMTLAHDAQGQHIVDAIAFNID----PALWPNPQ 545 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 K++ V L +N +RG+ QL V Sbjct: 546 AKKVRVAYKLDINEFRGNTTVQLLVDYLELA 576 >gi|168261796|ref|ZP_02683769.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349010|gb|EDZ35641.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 577 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|168242829|ref|ZP_02667761.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451392|ref|YP_002047026.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|198243236|ref|YP_002217019.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388885|ref|ZP_03215497.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928204|ref|ZP_03219404.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194409696|gb|ACF69915.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197937752|gb|ACH75085.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605983|gb|EDZ04528.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322526|gb|EDZ07723.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205338091|gb|EDZ24855.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|326624787|gb|EGE31132.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 577 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|283835348|ref|ZP_06355089.1| single-stranded-DNA-specific exonuclease RecJ [Citrobacter youngae ATCC 29220] gi|291068513|gb|EFE06622.1| single-stranded-DNA-specific exonuclease RecJ [Citrobacter youngae ATCC 29220] Length = 577 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 178/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L ++ ++ LT +KA + A + +IM+ Sbjct: 21 DLPPLLRRLYASRGVRTAND---LERGLKGMLH-WQTLTGVEKAVEMLHDAFEKNLRIMV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLSLRAMGCNTVEYLVPNRFEDGYGLSPEVVDQVHARGAQMIMTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI V+V DHH A A+VNPN D L GV F Sbjct: 137 DNGISSHAGVDHAHALGICVLVTDHHLPGEILPNADAIVNPNLADCPFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++++ L+ ++ LDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLVLCNHLKSKGWFDARGIAVPKIVEYLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 RQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGVCRPGIKALLEIANREPAKLVASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHPGMILKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F R F + + + DG L+A+ + + + ML AGP+G P Sbjct: 437 LEEAQFERFQQRFGELVTEWLDPALLQGEVVSDGPLSAAEMTMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSCWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + + PV Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPV 577 >gi|323495871|ref|ZP_08100939.1| ssDNA exonuclease RecJ [Vibrio sinaloensis DSM 21326] gi|323319087|gb|EGA72030.1| ssDNA exonuclease RecJ [Vibrio sinaloensis DSM 21326] Length = 578 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 174/568 (30%), Positives = 280/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +I ++ R+ +R ++ L + R L L D A + +A+ ++I++ Sbjct: 18 SIAPLLKRIYASRGITSPEQ---LETAARALHSY-QKLHGIDAAVELLFEAVSQQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I+ GAQ+I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIDIGAQVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA QG+ V+V DHH E A+VNPN + L GV F Sbjct: 134 DNGVSSIEGVRYAKEQGLKVLVTDHHLPGHELPNVDAMVNPNLQECAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKTGWFSQQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL++++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFGVELLMANNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A Q + +V+ WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGEQDMPHGLVLFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEKF RP A + +G GS RSI G + + G+++K GGHAMAAGLT Sbjct: 374 IKEKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDTLDRIDTQNPGLIIKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F R F + + V DG L ++ + +ML + GP+G P Sbjct: 434 ILEKDFERFSKLFDEAVKQDLDEAALKGVILSDGELKPEEFSMHVAEMLRAGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLMIDHIE 576 >gi|110679772|ref|YP_682779.1| single-stranded-DNA-specific exonuclease RecJ, putative [Roseobacter denitrificans OCh 114] gi|109455888|gb|ABG32093.1| single-stranded-DNA-specific exonuclease RecJ, putative [Roseobacter denitrificans OCh 114] Length = 579 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 244/597 (40%), Positives = 337/597 (56%), Gaps = 33/597 (5%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 +FLG+E S++G RW+ E A + Q+ +P V +VL R V ++A+ FL P+ Sbjct: 2 SFLGIERSLTGRRWIG-PSVEIARAAKTLEQRTDLPAPVCQVLARRGVQAEHAEGFLAPA 60 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R LMPDP L D KAA R + A+ EKI IF DYDVDG +S AL++ +L A Sbjct: 61 LRDLMPDPRSLKDMTKAATRFLNAVQKREKIAIFADYDVDGGSSAALLLAWLRQMGREAT 120 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +YIPDRI +GYGPN M + LI+ VDCG+ S+ + A G DV+V+DHH Sbjct: 121 LYIPDRIDEGYGPNDEAMAQLAR-SHDLIVCVDCGTLSHGPI--AAAAGADVLVLDHHLG 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 E A A+VNPNR D+ GHLCAAGVVFL+LV + R+LR+ + DL++ LDL Sbjct: 178 TEELPDALAVVNPNRQDESGDLGHLCAAGVVFLLLVELRRLLRETGQ--TGPDLMAFLDL 235 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 VALATV DV PL+G+NRA+V +GL V R+ GL AL + + + A +LG+++GP Sbjct: 236 VALATVADVAPLVGVNRAFVRQGLKVLARRERVGLTALADVAGVDTEPNAYHLGFILGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGRIG ++LG+RLL SDD E LA +LD LN RR +E+A+ A A+ + D Sbjct: 296 VNAGGRIGAADLGARLLASDDPHEAAALAERLDKLNTERRDIEAAVRATALAQAEARGLD 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ G WHPG+VG++A+RLKE GRPS I + G G GSGRS+ G D+G+ Sbjct: 356 ---RPLVWAAGADWHPGVVGIVASRLKEAAGRPSIVIGITD-GIGKGSGRSVAGIDLGQP 411 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + EG+L+KGGGH MAAGLTVE + I IDG+L Sbjct: 412 IHRLAAEGLLLKGGGHKMAAGLTVEESKIEPAMARLSELLEKQGAGSIGAADLHIDGMLM 471 Query: 485 ASAVNIALIDMLES-----------AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 A + L+ +E +AF + ++ + V HL+++F Sbjct: 472 PQAAAVELVQKIEQAGPFGAAAPAP-----------RYAFADVAIRYAKRVGENHLKISF 520 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S ++ AI F Y T LG L G R H+ G L +N WRG + QLR+ DA+ Sbjct: 521 GSDAG-SMDAICFGAYDTELGPALEMHGGARFHLAGRLDINTWRGRQSVQLRLEDAA 576 >gi|167765282|ref|ZP_02437395.1| hypothetical protein BACSTE_03670 [Bacteroides stercoris ATCC 43183] gi|167696910|gb|EDS13489.1| hypothetical protein BACSTE_03670 [Bacteroides stercoris ATCC 43183] Length = 582 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 166/582 (28%), Positives = 273/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLLGQEGINRA-LAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W L A + Q+ I ++ R+LV R ++ AK F P + L DP + Sbjct: 15 KWNYLPITSDQAEASQRLAQELGISPVLGRLLVERGITTATAAKKFFRPQLPDLY-DPFL 73 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 74 MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 133 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA +GID I+ DHH PA A+ Sbjct: 134 YGVSTQGVDYASETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAVAI 193 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 194 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 248 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 249 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQN 308 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 309 GKEAVDLLTEKDFSVALEKAGQINQYNETRKDLDKTMTEEA-NQIVAGLEGLADRRSIVL 367 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 368 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 424 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F++F + T+ V I+ ++ + Sbjct: 425 LENFGGHTYAAGLSMKVENVPAFTERFEEFVSRHILPEQTSAVIDINAEIDFRDITPKFC 484 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF N + +VV H+++ + + + IAF Sbjct: 485 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 544 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 545 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 581 >gi|153214105|ref|ZP_01949239.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 1587] gi|124115531|gb|EAY34351.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 1587] Length = 584 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582 >gi|229846244|ref|ZP_04466356.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 7P49H1] gi|229811248|gb|EEP46965.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 7P49H1] Length = 575 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFADVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574 >gi|262170637|ref|ZP_06038315.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus MB-451] gi|261891713|gb|EEY37699.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus MB-451] Length = 584 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 177/568 (31%), Positives = 276/568 (48%), Gaps = 25/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ R+ +NR V L + + L L ++A + AI ++I++ Sbjct: 24 IAPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGIERAVELLFAAIAEQKRIIVV 79 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TVD Sbjct: 80 GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 139 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 140 NGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 199 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 200 LMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 259 Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 260 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 319 Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+R Sbjct: 320 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 379 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGLT Sbjct: 380 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 439 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E NF R C F + + DG L ++ +ML + GP+G P Sbjct: 440 IEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTAEMLRAGGPWGQAFP 499 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 500 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----ASV 554 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 555 KTVRLAYKLDINEFRGNQSLQLMIDHIE 582 >gi|153802796|ref|ZP_01957382.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MZO-3] gi|124121661|gb|EAY40404.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MZO-3] Length = 584 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + +YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGGRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582 >gi|168231147|ref|ZP_02656205.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468598|ref|ZP_03074582.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194470621|ref|ZP_03076605.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205353966|ref|YP_002227767.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858305|ref|YP_002244956.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238909841|ref|ZP_04653678.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194454962|gb|EDX43801.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456985|gb|EDX45824.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205273747|emb|CAR38742.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205334591|gb|EDZ21355.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|206710108|emb|CAR34463.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629080|gb|EGE35423.1| single-stranded-DNA-specific exonuclease RecJ [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 577 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPEAEAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|229521246|ref|ZP_04410666.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TM 11079-80] gi|229341778|gb|EEO06780.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae TM 11079-80] Length = 584 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 178/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIAPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDHLE 582 >gi|325954900|ref|YP_004238560.1| single-stranded-DNA-specific exonuclease RecJ [Weeksella virosa DSM 16922] gi|323437518|gb|ADX67982.1| single-stranded-DNA-specific exonuclease RecJ [Weeksella virosa DSM 16922] Length = 568 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 174/581 (29%), Positives = 273/581 (46%), Gaps = 20/581 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW L Q L + Q +P+ +A +L+ R + + D AK + PS+ L DP ++ Sbjct: 4 RW-LLEPQPKEEDVLHMEQLINVPEALAVILLQRGINTFDLAKAYFRPSLEKLH-DPFLM 61 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A R+ +AI N E I+I+GDYDVDG +V L+ +LS+ N + YIPDR +GY Sbjct: 62 KDMDVAIDRLQKAIRNQENILIYGDYDVDGTTAVTLVYEYLSNYYSNLSYYIPDRYKEGY 121 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D ++YA +GID I+ DHH + A A++ Sbjct: 122 GVSVQSIDFAHDNDVSLIIALDCGIKALDKIEYAKTKGIDYIICDHHLPGKDIPNAVAVL 181 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D L GV F ++ L L DL+A++ D+VP Sbjct: 182 DPKRKDCPYPYKELSGCGVGFKLMHAFAMH-----NQLPFDTLEPLFDLLAVSIAADIVP 236 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR GL PG +I NI + NL + I P INA GRI + Sbjct: 237 ITGENRILAYFGLKRINENPRPGFAKMIP-DNIQKNLNISNLVFTIAPKINAAGRIEHAY 295 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 RL++S D E K+ LN+ RR ++S + + A ++ D VV Sbjct: 296 DAVRLMLSSDDYEAVKYLNKIKKLNERRRDLDSDITDGAIEQLSE--IDHSLNYTTVVYD 353 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 W+ G++G++A+RL + + +P+ + DG+ + S RS++GFD+ + ++ L Sbjct: 354 PEWNKGVIGIVASRLVDLYYKPTLVFTKGNDGELVASARSVKGFDLYQALNL--NSQFLE 411 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH AAGLT++ NF + F++ N + P +ID + ++ + + Sbjct: 412 KFGGHMAAAGLTLKEENFLAFRESFEETVKNSIQESQRIPTIEIDKEIKLKEISSSFKKI 471 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSE-TLQAIAFRVYGTP 552 L GP+G N NP F + +R + HL+ + T AI F++ T Sbjct: 472 LHQMGPFGPENMNPTFLSKDLVATDVRAMGKDGEHLRFLVHQRSERMTFTAIGFKLGNTK 531 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L G L NYW+G Q+ + D E Sbjct: 532 DKLIL----GVPFDAVYTLEQNYWQGKATWQMNIKDIRFHE 568 >gi|330807717|ref|YP_004352179.1| single-stranded-DNA-specific exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375825|gb|AEA67175.1| Putative single-stranded-DNA-specific exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 569 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 180/562 (32%), Positives = 280/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L D A +V A+ ++I+I Sbjct: 17 DLPPLLTRLYAARGVQSE---AELDKSLARLIP-FQQLKGIDAAVDLLVTALEQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + M L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALAREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGWYASTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG+KA++E S IT+ +LG+++GP +NA GR+ + +LG L+++D + Sbjct: 253 RARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTNDPALAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD +NQ+R+ +E M +A A++ + + + +WH G++G+LA+R+KE Sbjct: 313 AAQLDGMNQDRKSIEQGMQREALAQLKDLPVE-SMPFGLCLFDPQWHQGVIGILASRMKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + DG GSGRS+ GF I +S A ++ K GGHAMAAGLT+ Sbjct: 372 RYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + T DG L ++ L L AGP+G P P+ Sbjct: 432 ANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPM 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L RVV HL++ +S+ S L IAF + E + + + Sbjct: 492 FHGL-FQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDR----EIWPNPTVRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG + QL + P Sbjct: 547 KLDLNEFRGQETVQLMIAHIEP 568 >gi|262404728|ref|ZP_06081283.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC586] gi|262349760|gb|EEY98898.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio sp. RC586] Length = 579 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 175/588 (29%), Positives = 280/588 (47%), Gaps = 30/588 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + ++ I ++ R+ +NR V L + + L L Sbjct: 4 IQRRPDPDLSLLPD-----HIDPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGI 54 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGP 137 ++A + AI ++I++ GD+D DGA S AL + L N + +P+R DGYG Sbjct: 55 ERAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGL 114 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 +P ++++ I GA++I+TVD G +S + ++YA +G+ V+V DHH + A+VNP Sbjct: 115 SPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQQLPEVDAMVNP 174 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDV 253 N L GV F +++ + +RQ L+ L+DLVAL TV DV Sbjct: 175 NLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADV 234 Query: 254 VPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 VPL NR V +GL R PG++ALIE + A + G+ +GP INA GR+ Sbjct: 235 VPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRL 294 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQAS 369 + + G LL+ ++ +A +LD LNQ R+ +E A + L DD + Sbjct: 295 DDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPY 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA- 428 +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G + + Sbjct: 355 GLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKID 414 Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 GI++K GGHAMAAGLT+E NF R C F + + + DG L Sbjct: 415 TQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQVVREELDEAALKGIILSDGELKPEE 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQ 542 ++ ++L + GP+G P P+F K+ ++V HL++ E + + Sbjct: 475 FSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMID 533 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAF V + + K + + L +N +RG++ QL + Sbjct: 534 GIAFNVDLRRWPD----ASVKTIRLAYKLDINEFRGNQSLQLMIDYLE 577 >gi|229528598|ref|ZP_04417988.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 12129(1)] gi|229332372|gb|EEN97858.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 12129(1)] Length = 584 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 176/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFEHFCRLFDQLVREELDEAALQGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582 >gi|237807748|ref|YP_002892188.1| single-stranded-DNA-specific exonuclease RecJ [Tolumonas auensis DSM 9187] gi|237500009|gb|ACQ92602.1| single-stranded-DNA-specific exonuclease RecJ [Tolumonas auensis DSM 9187] Length = 575 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 179/560 (31%), Positives = 280/560 (50%), Gaps = 19/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP + ++ +R + LN S L+ P L +A + A+ +I+I Sbjct: 20 DIPARLRQIYASRGIKHADE---LNRSASSLL-SPQGLKGLPQALELLTDALQQQRRIVI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ALMM L +P+R GYG +P ++ + A+L+ITV Sbjct: 76 VGDFDCDGATSTALMMLALRAMGAQQVAYLVPNRFEYGYGLSPEIVMLAAQQKAELLITV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S ++ A QG+ V++ DHH +E A A+VNPN+L G G+L GV F Sbjct: 136 DNGISSIAGVETARQQGMKVLITDHHLPGAELPQADAIVNPNQLGCQFGSGNLAGVGVAF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + L+Q ++ LDLVAL TV DVV L NR V +GL R Sbjct: 196 YLMAALRSHLQQLGWFAQQNITAPNVADYLDLVALGTVADVVALDNNNRILVHQGLQRIR 255 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+KAL + S +TA +LG+ +GP +NA GR+ + +G L+S+D Sbjct: 256 AGRCRAGIKALCDVAGRDLSRLTASDLGFFLGPRLNAVGRLDDMTMGIACLLSNDDHVAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA ++D LNQ R+++E +M +A+A + + + + + +V+ D WH G+VGL+A+R Sbjct: 316 HLASQMDSLNQERKVIEGSMQLEAQATLSRLKSLEGELPAALVLHQDDWHQGVVGLVASR 375 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE++ RP FA + + + GSGRSI G + + G++ K GGHAMAAGL+ Sbjct: 376 IKEQYHRPVFAFAEAGEDELKGSGRSIPGLHMRDALERLDQLHPGLISKYGGHAMAAGLS 435 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + + + + F + T + DG L ++ + + L SAGP+G P Sbjct: 436 LPKSSLEPFRERFTALVTEWLAPEQLTGMVLTDGELFPQEFSLEMAEALRSAGPWGQAFP 495 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F L+ R+V HL+M E + L AIAF V + + ++ + Sbjct: 496 EPCFDG-VFHLRHQRLVGSKHLKMEVEVPNGPRLDAIAFNVDLARWPD----ASVGQVQL 550 Query: 568 TGHLCVNYWRGSKRCQLRVL 587 L +N WRG + QL V Sbjct: 551 VYRLDINEWRGQRSVQLLVE 570 >gi|300722129|ref|YP_003711412.1| ssDNA exonuclease, 5'-> 3'-specific, Mg-dependent [Xenorhabdus nematophila ATCC 19061] gi|297628629|emb|CBJ89207.1| ssDNA exonuclease, 5'-> 3'-specific, Mg-dependent [Xenorhabdus nematophila ATCC 19061] Length = 579 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++ R+ R + L + L+ + L ++A +V A++ +I+I Sbjct: 22 FHPLLRRLYAMRGIQTADE---LERGAKGLL-NYQSLNGIEQAVSLLVTALHEDWRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL +R L + +P+R DGYG + ++ + + +GA LIITVD Sbjct: 78 GDFDADGATSTALSIRALRAMGYRHLDYLVPNRFEDGYGLSVQVVGEVLKKGADLIITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+D + A I VIV DHH A A++NPN +D L GV F Sbjct: 138 NGISSHDGVATAHQHDIKVIVTDHHLPGETLPAADAIINPNLVDCSFPSKALAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMSALRAELRKRAWFEQQGIPLPNLAELLDLVALGTVADVVPLDTNNRILVYQGLNRIRA 257 Query: 274 QGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 L S+ + A +LG+ +GP +NA GR+ + ++G LL++DD + Sbjct: 258 GRCCAGIRALLEVSRRESTKLAASDLGFSLGPRLNAAGRLDDMSVGVALLLTDDMVQARQ 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LNQ RR +E M ++A + Q + + WH G+VG+LA+R+ Sbjct: 318 IACELDGLNQTRREIELGMQQEALQICDQIERTHTQLPYGLAIYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSVHGLHMRDALERLDTLHPGLMLKFGGHAMAAGLSI 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + + + A V DG L +++ + ++L GP+G Sbjct: 438 EQDKFDLFQHHFSELVADWLDAAQLEGVIWSDGELTLGELSLEIAEILRDGGPWGQAFAE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 PVF +L R+V HL++ E L IAF + + + K + + Sbjct: 498 PVFDGR-FRLLQQRIVGEKHLKVILEPLNGGPMLDGIAFNIDVNIWPD----NSVKTVEL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL + P+ Sbjct: 553 AYKLDINEFRGNRNVQLLIEHIWPL 577 >gi|254291787|ref|ZP_04962572.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae AM-19226] gi|150422299|gb|EDN14261.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae AM-19226] Length = 584 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 176/569 (30%), Positives = 278/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF + + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNIDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582 >gi|148981821|ref|ZP_01816538.1| ssDNA exonuclease RecJ [Vibrionales bacterium SWAT-3] gi|145960729|gb|EDK26069.1| ssDNA exonuclease RecJ [Vibrionales bacterium SWAT-3] Length = 578 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 176/568 (30%), Positives = 281/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ V+R V+ L + + L L D AA + AI + ++I++ Sbjct: 18 HLPDLLKRIYVSRGVNSADQ---LETAAKGLHSY-QKLGGIDAAAELLFNAIQHQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVEQAIEIGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + +++A +G++V+V DHH SE A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRFAKEKGLEVLVTDHHLPGSELPMVDAMVNPNLESCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ N L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKLNWFAERGMTEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A + S + + WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G GS RSI G + + G+++K GGHAMAAGLT Sbjct: 374 IKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLILKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F R F + + DG L ++ + L + GP+G P Sbjct: 434 IMEKDFERFSKLFNDVVKQELGETALKGIILSDGELLPEEFSMHTAETLRAGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K +H+ L +N +RG++ QL V Sbjct: 549 KTVHLAYKLDINEFRGNQSLQLMVDHIE 576 >gi|161506410|ref|YP_001573522.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867757|gb|ABX24380.1| hypothetical protein SARI_04608 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 577 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 178/566 (31%), Positives = 281/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGIRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLIITV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEIANRDPQRLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|16761823|ref|NP_457440.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143310|ref|NP_806652.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027657|ref|ZP_03342104.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051986|ref|ZP_03344864.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425821|ref|ZP_03358571.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646962|ref|ZP_03377015.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289823820|ref|ZP_06543432.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331606|pir||AH0871 single-stranded DNA-specific exonuclease [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504125|emb|CAD02872.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Typhi] gi|29138944|gb|AAO70512.1| single-stranded DNA-specific exonuclease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 577 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 176/566 (31%), Positives = 280/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ D A + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSA---RELERSVKGMLP-WQQLSGIDNAVEILYNAFREGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A I VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + +++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + F + + + DG L+A+ +++ + +L AGP+G P Sbjct: 437 LEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + D P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDDIWPL 577 >gi|332880400|ref|ZP_08448074.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681388|gb|EGJ54311.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 574 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 167/585 (28%), Positives = 279/585 (47%), Gaps = 22/585 (3%) Query: 15 GFRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 ++W E + A ++++ I I+ R+L+ RN++ AK F PS+ L DP Sbjct: 2 NYKWKLEPPTPEKLEAAERLSKELNISPILGRLLIERNITTVADAKKFFRPSLTELY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + TD DKA R+ +A+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FMFTDMDKAVERLNKALGRKERIMVYGDYDVDGCTAVALVYKFLQQYYSNIDYYIPDRYE 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G +LII +DCG + D + YA +GID I+ DHH PA Sbjct: 121 EGYGVSVKGIDYAYESGVKLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N R D HL GV F + + + L+ LLDL A++ D Sbjct: 181 AILNAKRFDSTYPYPHLSGCGVGFKFMQAFAQSNGIE-----FSQLIPLLDLCAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLKA+I+ +T ++ + IGP INA GRI Sbjct: 236 IVPIMGENRILAYHGLRQLNANPSIGLKAIIDVCGLSERELTISDIIFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+ D Q +A +++ N R+ ++ +M E+A + ++ + D + I Sbjct: 296 QNGKEAVALLVEKDYQTAHEMAEQINRYNDMRKDLDKSMTEEANS-IVEKLDKQSEQRSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WH G++G++A+RL E + RPS ++ + GS RS+ GFD+ K + Sbjct: 355 VIYNEEWHKGVIGIVASRLTEIYYRPSVVLTRTD-NLATGSARSVSGFDVYKAIESC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+ + + T+ + ID ++ + Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFHRRFEAYVETHILPEQTSAILNIDAQIDFKDITHK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 472 FHHDLKKFNPFGPDNTKPLFCTQHVYDYGTSKVVGREQEHIKLELVDNKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + + N + QL++ D P Sbjct: 532 QS----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIRPS 571 >gi|261250249|ref|ZP_05942825.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio orientalis CIP 102891] gi|260939365|gb|EEX95351.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio orientalis CIP 102891] Length = 577 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 178/566 (31%), Positives = 280/566 (49%), Gaps = 23/566 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP ++ R+ ++R + L ++R L L + A + AI ++++I+I Sbjct: 19 IPALLKRIYISRGIHNLEQ---LETTVRSLHSY-QKLHGIELAVELLFNAIRDNKRIIIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GAQ+I+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVDQAIELGAQVIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S D ++YA +G+ V+V DHH E A+VNPN + L GV F Sbjct: 135 NGVSSIDGVRYAKEKGLQVLVTDHHLPGHELPIVDAMVNPNLQECAFPSKALAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 195 LMMALCVHMRKTGWFTQQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIRA 254 Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 255 GKARPGIQALIEVAKRDAKRLVASDFGFALGPRINAAGRLDDMSFGVELLLSNNIHAARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LNQ R+ +E M ++A A +V+ WH G++G+LA+R+K Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAMAICERLQFGENMPHGLVMFQRDWHQGVIGILASRIK 374 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 EKF RP A + +G GS RSI G + ++ G++VK GGHAMAAGLT+ Sbjct: 375 EKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDVLDRIDTQNPGLIVKFGGHAMAAGLTIM 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 NF R + F + + V DG L ++ +ML + GP+G P P Sbjct: 435 ESNFERFSNLFDEAVKQDLDEAALKGVILSDGELTPEEFSMHTAEMLRAGGPWGQAFPEP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 +F K+ ++V HL++ E + + IAF V + + K Sbjct: 495 MFDGE-FKVLHQKLVGEKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASAKT 549 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L +N +RG++ QL + Sbjct: 550 VRLAYKLDINEFRGNQSLQLMIDHLE 575 >gi|88801557|ref|ZP_01117085.1| putative single-stranded-DNA-specific exonuclease [Polaribacter irgensii 23-P] gi|88782215|gb|EAR13392.1| putative single-stranded-DNA-specific exonuclease [Polaribacter irgensii 23-P] Length = 561 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 174/579 (30%), Positives = 282/579 (48%), Gaps = 24/579 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW +A + + +A VL RN+ + + AK + PS+ + DP ++ Sbjct: 2 RWTLKPT-PNKEKAAKLAADLKVDIAIAHVLCQRNIETYEAAKKYFRPSLEEIH-DPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + A RI AI N+E I+I+GDYDVDG +SVAL+ +L + N YIPDR +GY Sbjct: 60 KDMELAVARIETAIANNENILIYGDYDVDGTSSVALVSSYLKTITPNIATYIPDRYAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ + LII +DCG + D + YAT + ID I+ DHH+ E A A++ Sbjct: 120 GISYMGIDFAQDNDFSLIIALDCGIKALDKVAYATAKNIDFIICDHHKPGVEIPKAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP R D LC GV F ++ + Q D + LDLVA+A D+V Sbjct: 180 NPKRNDCNYPFDELCGCGVGFKLIQALGTSRGQR-----IIDFVPYLDLVAIAIAADIVQ 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 + G NR + GL V + G+KA+I + + +T ++ ++I P INA GR+ N Sbjct: 235 MTGENRVFTYFGLQVINQNPRNGIKAIIAQTS-KKVLTITDVVFIIAPRINAAGRMKHGN 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + A +++ N +R+ ++ + QA +++ Q ++ Q A+V V Sbjct: 294 YAVELLTEIEFDAAVKFAAAIEIFNADRKELDKKITNQALIQIIDQKEENQYATV--VFQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WH G++G++A+RL EK+ RP+ + D K S RS++GFD+ + E + Sbjct: 352 EDWHKGVIGIVASRLIEKYYRPTLVFTKSGD-KLAASARSVKGFDVYNALEACSEF--IE 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ N+ + F++ + + + TP ID ++ S + + Sbjct: 409 QFGGHKYAAGLTLLPENYQNFKNKFEEVVESTIDKKLLTPEISIDTTIDLSEITPKFFRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSI-RVVN--LAHLQMT-FESQDSETLQAIAFRVYGT 551 ++ GP+G N P F + + V HL++T F+ + +T AI F Sbjct: 469 IQQMGPFGPLNMKPTFTSTCVRDNGYGKQVGADKTHLKLTVFQGDNQKTYNAIGFN---- 524 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG + + + L N W G K QL + D Sbjct: 525 -LGAKMPLVKND-FDIAYSLDENEWNGVKSVQLLLKDLK 561 >gi|330959153|gb|EGH59413.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 571 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 287/564 (50%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 17 DLPPLLTRLYAARGVASE---AELDKSLARLIPY-QQLKGIDAAVELLVTALREDQRMLI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLMGASHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH SE A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGSELPAADAIVNPNQPGCSFPSKSLAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL+ + LR+ + +L LLDLVAL +V DVVPL NR V +GLM R Sbjct: 193 YVLMALRARLREVGWFDNNQRVQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD Sbjct: 253 AGRARPGLRAILEVARREPARITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPVLAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RL Sbjct: 313 EMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRL 371 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 KE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 KERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSL 431 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 N+ D F + T DG L ++ L L +AGP+G P Sbjct: 432 PEENYPAFADAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPE 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L RVV HL+M +++ S L IAF V + + + + Sbjct: 492 PLFHG-VFQLVERRVVGERHLKMVLKTECGSVKLDGIAFSVDR----DVWPNPNIRWVEL 546 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V+ +P Sbjct: 547 AYKLDLNEFRGNETVQLMVVHLAP 570 >gi|121587618|ref|ZP_01677382.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 2740-80] gi|121728374|ref|ZP_01681403.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V52] gi|147674577|ref|YP_001217917.1| ssDNA exonuclease RecJ [Vibrio cholerae O395] gi|227082538|ref|YP_002811089.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae M66-2] gi|229507523|ref|ZP_04397028.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae BX 330286] gi|298500225|ref|ZP_07010030.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MAK 757] gi|121548128|gb|EAX58201.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae 2740-80] gi|121629365|gb|EAX61796.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae V52] gi|146316460|gb|ABQ20999.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae O395] gi|227010426|gb|ACP06638.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae M66-2] gi|227014309|gb|ACP10519.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae O395] gi|229355028|gb|EEO19949.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae BX 330286] gi|297540918|gb|EFH76972.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae MAK 757] Length = 584 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 177/569 (31%), Positives = 277/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R VS L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVSN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFEHFCRLFDQLVREELDEAALQGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDV----S 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582 >gi|161501843|ref|NP_759519.2| ssDNA exonuclease RecJ [Vibrio vulnificus CMCP6] gi|319999089|gb|AAO09046.2| single-stranded-DNA-specific exonuclease RecJ [Vibrio vulnificus CMCP6] Length = 579 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 171/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++PDI+ R+ +NR + L +++ L L + A + +AI ++I++ Sbjct: 18 SVPDILKRIYLNRGI---QDISQLETAVKGLHSY-QKLHGIELAVELLFEAIREQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVEQAIALGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA G+ V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKEHGLKVLVTDHHLPGQVLPEVDAMVNPNLQTCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKCGWFAEQGMAEPKLMELVDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L ++ + + + WH G++G+LA+ Sbjct: 314 RMAHELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DG GS RSI G + + G+++K GGHAMAAGL Sbjct: 374 RIKEKYHRPVIAFADGGDGYIKGSCRSIPGLHMRDALDLIDTQNPGLILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + + DG L ++ ++L SAGP+G Sbjct: 434 TIKECDFERFSQLFDQLVKRELDEAALKGIVLSDGELKPEEFSMHTAELLRSAGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLFKGHPTNIMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +R ++ QL + Sbjct: 549 VKTVRLAYKLDINEFRNNQSLQLMIEHIE 577 >gi|153002031|ref|YP_001367712.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS185] gi|151366649|gb|ABS09649.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS185] Length = 577 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + L +R P + +AA I A+ ++ I+I Sbjct: 22 HLSPLLKQLYARRGALTHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+++ITV Sbjct: 77 VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V++ DHH E A A+VNPN+ D + GV F Sbjct: 137 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 197 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 256 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 257 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 317 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 377 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + ++ + T DG L + +N+ + +L +AGP+G Sbjct: 437 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + R+V HL++ E+Q L AIAF V + + Sbjct: 497 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 552 IVYKLDVNEYRGNFSLQLMVEQIE 575 >gi|311278188|ref|YP_003940419.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter cloacae SCF1] gi|308747383|gb|ADO47135.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacter cloacae SCF1] Length = 577 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 278/564 (49%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L +KA + A+ +I++ Sbjct: 21 DLPPLLRRLYASRGVRTAAD---LERSVKGMLP-WQQLNGVEKAVEMLYGALREGVRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLSLRALGCRNVSYLVPNRFEDGYGLSPEVVEQAHARGAQMIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A GI V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVERAHALGIPVLVTDHHLPGDTLPDADAIINPNLRDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTCLRDKGWFDEQGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEVSNRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 MLA +LD LNQ R+ +E M +A A + + WH G+VG+LA+R Sbjct: 317 MLASELDALNQTRKEIEQGMQAEALALCEKLEHSHETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLFPGLMLKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L+ S + + + +L AGP+G P Sbjct: 437 LEEAKFAEFQRRFGELVTEWLDPSLLQGEIVSDGPLSPSDMTLEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF + + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTACWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L +N +RG++ QL + + Sbjct: 552 LAYKLDINEFRGNRSVQLIIDNIW 575 >gi|304410561|ref|ZP_07392179.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS183] gi|307304654|ref|ZP_07584404.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica BA175] gi|304351045|gb|EFM15445.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS183] gi|306912056|gb|EFN42480.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica BA175] Length = 574 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + L +R P + +AA I A+ ++ I+I Sbjct: 19 HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+++ITV Sbjct: 74 VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V++ DHH E A A+VNPN+ D + GV F Sbjct: 134 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 374 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + ++ + T DG L + +N+ + +L +AGP+G Sbjct: 434 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + R+V HL++ E+Q L AIAF V + ++ Sbjct: 494 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIRHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572 >gi|270295834|ref|ZP_06202034.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D20] gi|317479740|ref|ZP_07938862.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 4_1_36] gi|270273238|gb|EFA19100.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. D20] gi|316904110|gb|EFV25942.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides sp. 4_1_36] Length = 571 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 163/582 (28%), Positives = 270/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ A+ F P + L DP + Sbjct: 4 KWNYQPITPEQAEASQQLAQELGISPILGKLLVERGITTAADARKFFRPQLPDLY-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+++GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDIAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSIQGVDYAAESGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L+ LLDL A++ D+V Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFA-----LNNGIEFHHLIPLLDLCAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLTDKDITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A K++ D + IV+ Sbjct: 298 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NKIVADLDGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F++F + T V I+ ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFIERFEEFVSQNILPEQTCAVIDINAEIDFRDITPKFF 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 474 SDLKKFNPFGPDNAKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRFIKTKRSFDICYSIEENTHK-RGEVQLQIEDIKP 570 >gi|160890827|ref|ZP_02071830.1| hypothetical protein BACUNI_03272 [Bacteroides uniformis ATCC 8492] gi|156859826|gb|EDO53257.1| hypothetical protein BACUNI_03272 [Bacteroides uniformis ATCC 8492] Length = 623 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 163/582 (28%), Positives = 270/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I I+ ++LV R ++ A+ F P + L DP + Sbjct: 56 KWNYQPITPEQAEASQQLAQELGISPILGKLLVERGITTAADARKFFRPQLPDLY-DPFL 114 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+++GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 115 MKDMDIAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 174 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + + + YA +GID I+ DHH PA A+ Sbjct: 175 YGVSIQGVDYAAESGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAI 234 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + N L+ LLDL A++ D+V Sbjct: 235 LNAKREDNTYPYEHLSGCGVGFKFMQAFA-----LNNGIEFHHLIPLLDLCAVSIASDIV 289 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 290 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLTDKDITVSDIVFKIGPRINASGRIQN 349 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A K++ D + IV+ Sbjct: 350 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NKIVADLDGLADRRSIVL 408 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 409 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 465 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F++F + T V I+ ++ + Sbjct: 466 LENFGGHTYAAGLSMKVENVPAFIERFEEFVSQNILPEQTCAVIDINAEIDFRDITPKFF 525 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 526 SDLKKFNPFGPDNAKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 585 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 586 ----SHVRFIKTKRSFDICYSIEENTHK-RGEVQLQIEDIKP 622 >gi|260775482|ref|ZP_05884379.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio coralliilyticus ATCC BAA-450] gi|260608663|gb|EEX34828.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio coralliilyticus ATCC BAA-450] Length = 578 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 176/568 (30%), Positives = 280/568 (49%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R ++ L + R L L D A + +AI +++I++ Sbjct: 18 DIAPLLKRIYISRGITSAQQ---LETTARALHSY-QKLHGIDAAVELLFEAIQGNKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVIALRMLGSNNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D ++YA QG+ V+V DHH E A+VNPN + L GV F Sbjct: 134 DNGVSSIDGVRYAKEQGLKVLVTDHHLPGHELPNVDAMVNPNLEECAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRKQGWFAEQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL++++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLMANNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E M ++A A Q D +V+ WH G++G+LA+R Sbjct: 314 RMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGDKDMPHGLVLFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEKF RP A + +G GS RSI G + + G+++K GGHAMAAGLT Sbjct: 374 IKEKFHRPVIAFADGGEGSIKGSCRSIPGLHMRDTLDRIDTQNPGLILKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F R F + + V DG L ++ + +ML + GP+G P Sbjct: 434 IMEKDFERFAQLFDEAVKQELDDAALKGVILSDGELKPEEFSMHIAEMLRAGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 EPLFDGE-FKVLHQKLVGDKHLKLMLEPLHKGHPTNIMIDGIAFNVDLRRWPD----ASV 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLMIDHIE 576 >gi|159901344|ref|YP_001547591.1| single-stranded-DNA-specific exonuclease RecJ [Herpetosiphon aurantiacus ATCC 23779] gi|159894383|gb|ABX07463.1| single-stranded-DNA-specific exonuclease RecJ [Herpetosiphon aurantiacus ATCC 23779] Length = 573 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 170/584 (29%), Positives = 271/584 (46%), Gaps = 23/584 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W ++ ++ + ++A +L NR + FLN + DP + Sbjct: 8 RHWQL-PTSASPSQLRSLGE---YHPLLAAILWNRGWRDAAAVEQFLNIDWKQ-RHDPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D+A RI QA+ ++++++GD+D DG V L+M+ + YIP R +G Sbjct: 63 LHDMDRAVERIKQAVAQQQRVVVYGDFDTDGVTGVTLLMQLFKAFGLPVRPYIPKREGEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +EK EG L++TVDCG ++ + A G D IV+DHHQ + PAYA+ Sbjct: 123 YGLNLAAIEKLHQEGLDLLVTVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAYAV 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P R D LC GV F + ++R P N +LD+VAL T+ D++ Sbjct: 183 VDPKRSDCAYPFKGLCGVGVAFKLYEALWRA----GIQPNNLRARDILDVVALGTIADMM 238 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL G NR V GL PGLKAL+ + I A ++G+ + P INA GR+ + Sbjct: 239 PLTGENRVLVHFGLQAMNESQRPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVD 298 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + + LL++ D + + A +L+ N R+ + + + A Q ++V+ Sbjct: 299 ARIAYSLLLAPDQAQADGFADQLNSTNIERQALTRDVQQAARELA--QNSGQLDQRILVI 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ +H G+VGL A +L E+F RP + +E+ + GS RSI GF+I ++ + Sbjct: 357 VGEDFHHGVVGLAAGKLAEEFARPVLVMG-KEEDRSRGSARSIPGFNIVNALAEC--ADL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 K GGHA AAG T+ + L Q A+ + + P ID +N+ + Sbjct: 414 FEKYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTL 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 +LE P+G NP P F + R V HL++ + AI F + Sbjct: 474 AVLEKMAPFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQ-TAIGFNLGDW 532 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 G ++ + + +N W G QL ++D EG Sbjct: 533 ----LAELPNGSQIDIVYTVGINEWNGRSSVQLTLVDLRLSEGQ 572 >gi|126173090|ref|YP_001049239.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS155] gi|125996295|gb|ABN60370.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS155] Length = 577 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + L +R P + +AA I A+ ++ I+I Sbjct: 22 HLSPLLKQLYARRGALTHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+++ITV Sbjct: 77 VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V++ DHH E A A+VNPN+ D + GV F Sbjct: 137 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 197 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 256 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 257 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 317 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 377 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + ++ + T DG L + +N+ + +L +AGP+G Sbjct: 437 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + R+V HL++ E+Q L AIAF V + + Sbjct: 497 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 552 IVYKLDVNEYRGNFTLQLMVEQIE 575 >gi|218782997|ref|YP_002434315.1| single-stranded-DNA-specific exonuclease RecJ [Desulfatibacillum alkenivorans AK-01] gi|218764381|gb|ACL06847.1| single-stranded-DNA-specific exonuclease RecJ [Desulfatibacillum alkenivorans AK-01] Length = 572 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 271/583 (46%), Gaps = 21/583 (3%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 RW + + A+++ +A +VNR + A+ +L PS+ L P P Sbjct: 2 NRRWKL--CEPNLEAVEALSKYLGCHKAIAGAMVNRGIREPGAAERYLGPSLADL-PSPF 58 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L D DKA RI+ AI E I++FGDYD DG S AL+ FL ++P R + Sbjct: 59 TLKDMDKAIARIIHAIQARENILVFGDYDADGVCSTALLTEFLLEAGARVFFHVPHRTQE 118 Query: 134 GYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYG + + +++ QL+ITVD G +S++A++ A G+DVIV DHH PA Sbjct: 119 GYGFSSQHIRNPVLSKKIQLVITVDNGISSHEAIEEAGQAGVDVIVTDHHTPSETPPPAL 178 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATV 250 A+++P SG HL GV F + + + +R+ P +L DLVAL T+ Sbjct: 179 AVIDPKLPGCPSGLDHLAGVGVAFYLCIGLRMAMREQGLWPEGKEPNLKHKCDLVALGTI 238 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309 D+VPLIG NR GL + PG+KAL++ + + ++A +L + P +NA G Sbjct: 239 ADMVPLIGENRILTRAGLEIMGAAARPGVKALLDVSAVDNSTVSAHDLAFRAAPRLNAPG 298 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ +N LL+ + LA ++D LN+ R+ M + A + + + D++ Sbjct: 299 RVDHANKAVELLLEKSNSRARQLAWEIDALNRKRQRMSEDLYHSALSLLKSD-HDLKGKR 357 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +V+ WHPG++G+ AA+L +F P IS ++ G GS RSI G D+ + + Sbjct: 358 SLVMAHSGWHPGVIGIAAAKLVREFNCPVVLISMDKR-TGKGSARSIPGVDLYQALQACE 416 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + L+ GGHA AAGLT++ + F V ID +N + Sbjct: 417 SQ--LIAFGGHAQAAGLTIDDKSIETFRGMFDSQVLEKSTERDFERVLTIDYSVNPMEIG 474 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET--LQAIAFR 547 + +ES P+G NP PVF ++ V H +M F S + T LQAI F Sbjct: 475 PDFANQIESMAPFGIANPEPVFISTEVGIKQGPTVGRGHRRMVFHSGEGNTKPLQAIWFN 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + V + N W+ + Q + Sbjct: 535 ARDQLVPSIAGA-------VAYRVQWNRWKDRQTVQAIIEGIR 570 >gi|300936042|ref|ZP_07150990.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 21-1] gi|300458834|gb|EFK22327.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 21-1] Length = 577 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ L+P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGLLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|164687523|ref|ZP_02211551.1| hypothetical protein CLOBAR_01164 [Clostridium bartlettii DSM 16795] gi|164603297|gb|EDQ96762.1| hypothetical protein CLOBAR_01164 [Clostridium bartlettii DSM 16795] Length = 835 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 178/579 (30%), Positives = 294/579 (50%), Gaps = 23/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W G + + + I ++++L NR++ + A+ F+NPS+ L DP + Sbjct: 5 KKWTLK--HFGKIKENKVGTQVGISPEISQILKNRDIITEKDAEIFMNPSLDYLR-DPFL 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D K RI +AI E+I I+GDYDVDG +S ++++ + + YIP+R+ +G Sbjct: 62 MKDMQKGVDRIKKAIEKKERIFIYGDYDVDGVSSTSILVLYFKSIGYDVKYYIPNRLKEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +EK G L+I+VDCG TS +++A G+DVI+ DHH+ + E A A+ Sbjct: 122 YGISIEALEKINEIGCDLLISVDCGITSAKEVEFAKTLGMDVIITDHHECQDEIPDAIAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D LC GV F ++ + + L++V LAT+CD+V Sbjct: 182 INPKQEDCTYPYDFLCGCGVAFKLIQAL------TPPEVFRESMYDYLEIVTLATICDIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL NR V GL + + N GLK LI+ I + + ++GY +GP INA GR+G Sbjct: 236 PLKDENRIIVKNGLKMMKDGRNIGLKELIKVCGIDTHQLKSSHIGYSVGPRINASGRLGY 295 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S LG L +D ++ + +AM L+ N R+L+ES M +AEA + + + V+VV Sbjct: 296 SYLGVELFTADSPEQAKEIAMDLEEKNSERQLIESKMYSEAEAIIASN-QSYEDDKVLVV 354 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W GI+G++A++L EK+ +P+ ++ E+G GS RSI+GF I + + + Sbjct: 355 ANEGWQHGIIGIVASKLTEKYYKPTILLT-IEEGMATGSARSIKGFSIFDALVEC--KDL 411 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAGL+++ N L + A + K++ L V++ L+ Sbjct: 412 MSKFGGHEQAAGLSMDARNIDELRQRVNEIADYSLTKEDMIENIKVEYELQEGQVDLDLV 471 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 D L P+G NP P F + L +I V HL++T + +AI F + Sbjct: 472 DQLHLLEPFGMSNPTPRFIMRDLVLANIGFVGAAKQHLKLTLQKDS--VYEAIGFNMAYL 529 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +RG ++ V L N + +++ Q + D Sbjct: 530 ----ADEFTRGDKVDVLFQLDENNYNNNRKVQFLLKDVR 564 >gi|161829966|ref|YP_001596438.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii RSA 331] gi|161761833|gb|ABX77475.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii RSA 331] Length = 574 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 283/562 (50%), Gaps = 19/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ + RNV+ L ++ L+P +L + DKA R+ QA+ + ++I++ Sbjct: 20 LHPVLQRIYLARNVNSPDE---LTHELKNLLPYSSLL-NIDKAVARLTQALKDQQQIIVI 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + N + +P+R GYG P +++ + LIITVD Sbjct: 76 GDFDADGATSTALTVSALHAFGMENVSYLVPNRFAYGYGLTPEIVDLASSRRPDLIITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A GIDVI+ DHH PAYA+VNPN DD L GV F Sbjct: 136 NGISSHAGVAHANQLGIDVIITDHHLQGETVPPAYAIVNPNCKDDPFPSKCLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + L++ N ++ LD VAL T+ D+VPL NR V +GL R Sbjct: 196 LMLALRAELKKINWFERRGLECPNMAKFLDFVALGTIADIVPLDRNNRILVHQGLRRIRA 255 Query: 274 -QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 Q +PG+ AL+E + A +LG+ IGP +NA GR+ + +LG L++D+ Sbjct: 256 GQAHPGILALLEVSGRPREKLRATDLGFGIGPRLNAAGRLDDMSLGVACLLADNLDAALD 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LN+ RR++ES M ++A + + + + + WH G+VGL+A+R+K Sbjct: 316 IAYRLDDLNKERRVIESQMQKEAFDAIDGLNLNNGLPPALCLYQEEWHQGVVGLVASRVK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449 E+ RP+ + D GS RS+ G I ++ G++ K GGHAMAAGL++ Sbjct: 376 ERTHRPTIVFAKMNDSTLKGSARSVSGLHIRNVLEAIAIKHPGLVTKFGGHAMAAGLSLP 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F + F + + + P DG L ++ + + L ++ GP+G P P Sbjct: 436 LERFNEFKEAFSREVNERLDEDDLQPRLVSDGELTSNELTLELALLMHEGGPWGQDFPEP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F KL + RVV HL++ + DS L IAF F + H+ Sbjct: 496 LFDGR-FKLINQRVVGQRHLKLILQVPDSNYYLDGIAFHADLEQWPNFHCEYA----HLA 550 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L VN ++G ++ QL V Sbjct: 551 YRLDVNEFQGRRKLQLLVEHIR 572 >gi|29653848|ref|NP_819540.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii RSA 493] gi|153207937|ref|ZP_01946490.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii 'MSU Goat Q177'] gi|154706986|ref|YP_001424908.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii Dugway 5J108-111] gi|165919114|ref|ZP_02219200.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii RSA 334] gi|212218884|ref|YP_002305671.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii CbuK_Q154] gi|29541111|gb|AAO90054.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii RSA 493] gi|120576238|gb|EAX32862.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii 'MSU Goat Q177'] gi|154356272|gb|ABS77734.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii Dugway 5J108-111] gi|165917183|gb|EDR35787.1| single-stranded-DNA-specific exonuclease RecJ [Coxiella burnetii RSA 334] gi|212013146|gb|ACJ20526.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii CbuK_Q154] Length = 574 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 283/562 (50%), Gaps = 19/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ + RNV+ L ++ L+P +L + DKA R+ QA+ + ++I++ Sbjct: 20 LHPVLQRIYLARNVNSPDE---LTHELKNLLPYSSLL-NIDKAVARLTQALKDQQQIIVI 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + N + +P+R GYG P +++ + LIITVD Sbjct: 76 GDFDADGATSTALTVSALHAFGMENVSYLVPNRFAYGYGLTPEIVDLASSRRPDLIITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A GIDVI+ DHH PAYA+VNPN DD L GV F Sbjct: 136 NGISSHAGVAHANQLGIDVIITDHHLQGETVPPAYAIVNPNCKDDPFPSKCLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + L++ N ++ LD VAL T+ D+VPL NR V +GL R Sbjct: 196 LMLALRAELKKINWFERRGLECPNMAKFLDFVALGTIADIVPLDRNNRILVHQGLRRIRA 255 Query: 274 -QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 Q +PG+ AL+E + A +LG+ IGP +NA GR+ + +LG L++D+ Sbjct: 256 GQAHPGILALLEVSGRPREKLRATDLGFGIGPRLNAAGRLDDMSLGVACLLADNLDAALD 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LN+ RR++ES M ++A + + + + + WH G+VGL+A+R+K Sbjct: 316 IAYRLDDLNKERRVIESQMQKEAFDAIDGLNLNNGLPPALCLYQEEWHQGVVGLVASRVK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449 E+ RP+ + D GS RS+ G I ++ G++ K GGHAMAAGL++ Sbjct: 376 ERTHRPTIVFAKMNDSTLKGSARSVSGLHIRNVLEAIAIKHPGLVTKFGGHAMAAGLSLP 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F + F + + + P DG L ++ + + L ++ GP+G P P Sbjct: 436 LERFDEFKEAFSREVNERLDEDDLQPRLVSDGELTSNELTLELALLMHEGGPWGQDFPEP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F KL + RVV HL++ + DS L IAF F + H+ Sbjct: 496 LFDGR-FKLINQRVVGQRHLKLILQVPDSNYYLDGIAFHADLEQWPNFHCEYA----HLA 550 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L VN ++G ++ QL V Sbjct: 551 YRLDVNEFQGRRKLQLLVEHIR 572 >gi|296117410|ref|ZP_06835998.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter hansenii ATCC 23769] gi|295976012|gb|EFG82802.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter hansenii ATCC 23769] Length = 616 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 219/601 (36%), Positives = 323/601 (53%), Gaps = 16/601 (2%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEG------INRALAITQKHAIPDIVARVLVNRNVSID 55 +D LGV S++G RW+ +AI Q+ +P+IV R+L R ++ + Sbjct: 17 DDALVLGVSSSLTGRRWLWRDPSATRDAGRTARMGMAIMQQAGVPEIVGRMLAMRGIAPE 76 Query: 56 YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115 +DFL P++R LMPDP + D DKAA+R+ QAI SE + +FGDYDVDGA S AL+ F Sbjct: 77 VVQDFLTPTLRALMPDPAGMIDMDKAAQRLAQAITASETVGVFGDYDVDGACSAALLTHF 136 Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175 L ++PDR+ +GYGPN +E I++GA +I+ VDCG+ + D L + + D Sbjct: 137 LRQMGCRVITHVPDRMNEGYGPNTPAIEAMIDDGAGVIVCVDCGTAASDILSPLSAR-AD 195 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--P 233 +IV+DHH+V+ + A VNPNRLD S CAA V F+ +V +LR++ Sbjct: 196 IIVLDHHKVQGDLPRITATVNPNRLDCPSRLHGACAAAVAFMAVVATAGVLRREGWFETR 255 Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPI 292 L+ LDLVALA+VCDV+PL GLNRA+V +G+ + R+ GL AL++ + Sbjct: 256 PMPQLMDYLDLVALASVCDVMPLTGLNRAFVTQGMKIMARRQRTGLNALLDVSGVTDDRL 315 Query: 293 TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352 ++ G+ +GP INAGGRI ES LG LL+ +D+ E LA +LD +N+ R+ +E +L+ Sbjct: 316 SSSTCGFALGPRINAGGRIAESGLGLELLLCEDALEARRLAERLDAVNRRRQTVEGDILD 375 Query: 353 QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGS 412 A Q + V+++ G WHPG+VG++A R+KEKF RP + EDG GS Sbjct: 376 IAMDMAARQR--EEGHPVLLLCGRDWHPGVVGIVAGRVKEKFNRPVLVGAMLEDGTVKGS 433 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 RS+ G D+G + A + G L GGGHAMAAG + + L F + AL Sbjct: 434 ARSVPGIDLGTAIIAARQAGHLTSGGGHAMAAGFGLNAGDIPALHMFLDERLS-HAAALP 492 Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQ 530 I+GV+ +A + L + P+GAGN P+ A P ++ + L+ Sbjct: 493 DAVDLCIEGVVGVAAATVELATDIGRLAPFGAGNDEPLLALPRVRILRADRIGREGNTLR 552 Query: 531 MTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + E L+A+ FR P+ L +H+ G L W G + DA Sbjct: 553 LLIEGEGGGPRLKALLFRAGDNPMTPVLEDRNAPPVHLAGWLQAQTWNGRTTASFFIRDA 612 Query: 590 S 590 + Sbjct: 613 A 613 >gi|238754562|ref|ZP_04615916.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia ruckeri ATCC 29473] gi|238707193|gb|EEP99556.1| Single-stranded-DNA-specific exonuclease recJ [Yersinia ruckeri ATCC 29473] Length = 577 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 178/563 (31%), Positives = 272/563 (48%), Gaps = 20/563 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ R + L ++ L P +L + + QA+ ++IMI Sbjct: 22 LHPLLRRLYATRGLKSPDE---LERGVKGLQPY-GLLDGIEAGVNLLQQALVERQRIMIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ GA LI+TVD Sbjct: 78 GDFDADGATSTALAVLSLRSMGCGNVDYLVPNRFDDGYGLSPEVVEQVAARGADLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN + L GV F Sbjct: 138 NGISSHTGVDLAHVKGIKVLVTDHHLPGEVLPAAEAIINPNLVGCDFPSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMLALRARLRESGWFEQRALAIPNLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+SDD + Sbjct: 258 GKCRPGIKALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDMSIGVALLLSDDIAQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA+ LD LN RR +E +M +A + + I + WH G+VG+LA+R+ Sbjct: 318 LAIDLDTLNLTRREIEQSMQVEALQLCEQLERTSSELPYGIAMYHAEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGILKGSGRSVAGLHMRDALERLDTLNPGLMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F F + V DG L + + ++L GP+G P Sbjct: 438 EQDKFDEFRQRFAALVGEWMDPSQLEGVIWSDGELTGVQLTLETAELLRDGGPWGQAFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L R+V HL++ E L IAF + T + S + + + Sbjct: 498 PTFDGK-FRLLQQRLVGERHLKLMLEPLSGGPLLDGIAFNIDTTLWPD----SSVREVKL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L +N +RG++ QL + Sbjct: 553 AYKLDINEFRGNRSVQLLIQHIW 575 >gi|258625138|ref|ZP_05720055.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus VM603] gi|258582589|gb|EEW07421.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus VM603] Length = 579 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 178/568 (31%), Positives = 276/568 (48%), Gaps = 25/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ R+ +NR V L + + L L ++A + AI ++I++ Sbjct: 19 IAPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGIERAVELLFAAIAEQKRIIVV 74 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 135 NGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 195 LMMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 254 Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 255 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 314 Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+R Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGLT Sbjct: 375 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E NF R C F + + DG L ++ +ML + GP+G P Sbjct: 435 IEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTAEMLRAGGPWGQAFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 495 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----ASV 549 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RGS+ QL + Sbjct: 550 KTVRLAYKLDINEFRGSQSLQLMIDHIE 577 >gi|229524401|ref|ZP_04413806.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae bv. albensis VL426] gi|229337982|gb|EEO02999.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae bv. albensis VL426] Length = 584 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 177/569 (31%), Positives = 279/569 (49%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 I ++ R+ ++R V+ L + + L L D+A + AI ++I++ Sbjct: 23 HIDPLLRRLYLSRGVTN---VAQLEKAAKALH-SFKQLHGIDRAVELLFAAIAEQKRIIV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 79 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 139 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 198 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 199 YLMMALCVHMRQQGWFVAQGLAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 258 Query: 273 RQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 259 AGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAAR 318 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L DD + +V+ WH G++G+LA+ Sbjct: 319 RMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILAS 378 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGL Sbjct: 379 RIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGL 438 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+E NF R C F + + + DG L ++ ++L + GP+G Sbjct: 439 TIEEQNFARFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLYTAELLRAGGPWGQAF 498 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 499 PEPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----AS 553 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 554 VKTVRLAYKLDINEFRGNQSLQLMIDYLE 582 >gi|217974603|ref|YP_002359354.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS223] gi|217499738|gb|ACK47931.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS223] Length = 574 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 167/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + L +R P + +AA I A+ ++ I+I Sbjct: 19 HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+++ITV Sbjct: 74 VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V++ DHH E A A+VNPN+ D + GV F Sbjct: 134 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 254 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 374 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + ++ + T DG L + +N+ + +L +AGP+G Sbjct: 434 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + R+V HL++ E+Q L AIAF V + + Sbjct: 494 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572 >gi|170718677|ref|YP_001783871.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus somnus 2336] gi|168826806|gb|ACA32177.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus somnus 2336] Length = 573 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 18/563 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ P +L A +V A +KI+I G Sbjct: 19 HPLLDRIYRARQIKNPQQ---LDRTLKSMLA-PDLLHGIGSAVDLLVTAREKQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+DVDGA S AL++ L + + +P+R GYG + + + + + +L+ITVD Sbjct: 75 DFDVDGATSTALIVLALRQLGFTDVDYLVPNRFEQGYGLSVEVAKLALEKNVELLITVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + N G+ V++ DHH PA+A+VNPN L GV F V Sbjct: 135 GVSSFDGVVFLKNAGVQVLITDHHLPPEILPPAHAIVNPNLTQCNFPSKFLAGVGVAFYV 194 Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + LR + LLDLVAL T+ DVVPL NR +GL + + Sbjct: 195 MLALRAKLRDLGIFTTQTQPNFTELLDLVALGTISDVVPLDQNNRILAYQGLARIRAERC 254 Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL E N + +TA +LG+ IGP +NA GR+ ++G LL++DD Q LA Sbjct: 255 RPGIRALAEIANRNMSRLTASDLGFSIGPRLNAAGRLDNMSVGVELLLTDDMQHARQLAF 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M ++A +Q + IV+ WH G++G+LA+R+K+K Sbjct: 315 ELDSLNQARKEIEQGMKQEALEICRNLTALSKQLPLGIVLYQVDWHQGVLGILASRIKDK 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP+ A + ++ G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 FHRPTIAFAQDQVGILKGSARSIEGLHMRDVLERIHSRYPDMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F + F + + + DG L + +N+ ++L AGP+G G P P F Sbjct: 435 LFTQFQQAFIQTVTEWLKEEQLQGIIWTDGQLAPAFLNLETAELLRQAGPWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 + +V HL+M E Q L AIAF + +F + K + Sbjct: 495 DGE-FTILRQSIVGEKHLKMLVEPKQGGPLLDAIAFNIDKDYYPDFSI----KHARIAYK 549 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 L N +RG++ QL V P++ Sbjct: 550 LDSNEFRGNRHVQLLVDYIEPLD 572 >gi|183599839|ref|ZP_02961332.1| hypothetical protein PROSTU_03356 [Providencia stuartii ATCC 25827] gi|188022111|gb|EDU60151.1| hypothetical protein PROSTU_03356 [Providencia stuartii ATCC 25827] Length = 577 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 193/582 (33%), Positives = 280/582 (48%), Gaps = 24/582 (4%) Query: 25 EGINRALAITQKH----AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 E R + + P+I+ RV +R V+ L L+ D L+ D Sbjct: 4 ETFLRQRTLAEDIKTLDGFPEILQRVYAHRGVTD---ISQLERKAANLL-DYRTLSGIDN 59 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNP 139 A + A+ N I I GD+D DGA S AL +R L VN N +P+R +GYG P Sbjct: 60 ALTLLYSALENHSVITIVGDFDADGATSTALAIRALKSMGYVNLNYIVPNRFENGYGLTP 119 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 ++E+ GA LIITVD G +S++ ++ A I VIV DHH A A++NPN Sbjct: 120 LVVEEAYKRGADLIITVDNGISSHEGVEAARQHDIKVIVTDHHLPGDVLPKADAIINPNL 179 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVP 255 L GV F ++ + LRQ+ +L LDLVAL TV DVVP Sbjct: 180 EGCQFASKSLAGVGVTFYLMSALRAKLRQEGWFVKQGMSEPNLAEFLDLVALGTVADVVP 239 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + G+KALIE S + A + G+ +GP +NA GR+ + Sbjct: 240 LDTNNRILVHQGLHRVRAGRCCAGIKALIEVSKRECSRLVANDFGFALGPRLNAAGRLDD 299 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIV 372 ++ LL++DD LA +LD LNQ RR +E+ M ++A + D Q + + Sbjct: 300 MSVSIELLLTDDMAYARELANELDGLNQARREIEAGMQQEASVLFNKIEYSDSQLPNGLA 359 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--E 430 + WH G+VG+LA+R+KE++ RP A + DG GSGRS+ G + + + Sbjct: 360 IYHPEWHQGVVGILASRIKEQYHRPVIAFAPAGDGTLKGSGRSVPGVHMRDALERLNTLQ 419 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G++ K GGHAMAAGL++E FG F+ ++ + V DG L + Sbjct: 420 PGLMQKFGGHAMAAGLSLEESKFGLFKQHFESLMGELIQPDQLSGVVWSDGELKQDEFTL 479 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY 549 + ++L +GP+G P PVF +L R+V HL+M E + L AI F + Sbjct: 480 EIAELLRESGPWGQSFPEPVFDGY-FRLLQQRLVGERHLKMMLEPVKGGPMLDAIMFNID 538 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + KR + L VN +RG K QL V P Sbjct: 539 VRRWPD----NSVKRAKIAFKLDVNEFRGQKSVQLMVEHIWP 576 >gi|30022484|ref|NP_834115.1| single-stranded-DNA-specific exonuclease recJ [Bacillus cereus ATCC 14579] gi|29898042|gb|AAP11316.1| Single-stranded-DNA-specific exonuclease recJ [Bacillus cereus ATCC 14579] Length = 779 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 180/589 (30%), Positives = 279/589 (47%), Gaps = 27/589 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + R + K + +V + + R + + DFLN DP +L Sbjct: 7 RWKEKEYND--ERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTE-NQEFHDPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ R+ +AI N E+I+IFGDYD DG +S ++ L YIP+R +GY Sbjct: 64 EGMDRTGERVNKAIQNGEQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN + G LIITVD G + A GID+I+ DHH+ E A A++ Sbjct: 124 GPNEEAFRWAHSAGVSLIITVDTGIAAVHEANVAKELGIDLIITDHHEPPPELPEALAII 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + +L GV F V + + + LL++ + TV D+V Sbjct: 184 HPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPE-----------HLLEIAVIGTVADLVS 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL R N GLKAL + N+S IT E++G+ I P INA GR+ ++ Sbjct: 233 LHGENRLLVKRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL+SDD +E + LA ++D LN+ R+ + + E+A A+V + V+V+ Sbjct: 293 APAVHLLLSDDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENK-VLVLA 351 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+PG++G++A++L E+F RP+ +S + GS RSI GFD+ + + + Sbjct: 352 KEGWNPGVIGIVASKLVERFYRPTIVLSIDPIKETAKGSARSIAGFDL--FANLSDCREL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH MAAG+T+ + L + A I+ P+ +D V +A I Sbjct: 410 LPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTEEDFIPITAVDVFCKVEDVTLAAI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + ++ P+G GNP P A + +L+SIR + +HL+M TL I F Sbjct: 470 EDMQKLAPFGVGNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQ-ATLDTIGFGFG-- 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S ++ V G +N W K+ QL V D + F + Sbjct: 527 --AYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQDIAVEAWQLFDWR 573 >gi|212213009|ref|YP_002303945.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii CbuG_Q212] gi|212011419|gb|ACJ18800.1| single-stranded-DNA-specific exonuclease [Coxiella burnetii CbuG_Q212] Length = 574 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 176/562 (31%), Positives = 282/562 (50%), Gaps = 19/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ + RNV+ L ++ L+P +L + DKA R+ QA+ + ++I++ Sbjct: 20 LHPVLQRIYLARNVNSPDE---LTHELKNLLPYSSLL-NIDKAVARLTQALKDQQQIIVI 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + N + +P+R GYG P +++ + LIITVD Sbjct: 76 GDFDADGATSTALTVSALHAFGMENVSYLVPNRFAYGYGLTPEIVDLASSRRPDLIITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A GIDVI+ DHH PAYA+VNPN DD L GV F Sbjct: 136 NGISSHAGVAHANQLGIDVIITDHHLQGETVPPAYAIVNPNCKDDPFPSKCLAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + L++ N ++ LD VAL T+ D+VPL NR V +GL R Sbjct: 196 LMLALRAELKKINWFERRGLECPNMAKFLDFVALGTIADIVPLDRNNRILVHQGLRRIRA 255 Query: 274 -QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 Q +PG+ AL+E + A +LG+ I P +NA GR+ + +LG L++D+ Sbjct: 256 GQAHPGILALLEVSGRPREKLRATDLGFGIAPRLNAAGRLDDMSLGVACLLADNLDAALD 315 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LN+ RR++ES M ++A + + + + + WH G+VGL+A+R+K Sbjct: 316 IAYRLDDLNKERRVIESQMQKEAFDAIDGLNLNNGLPPALCLYQEEWHQGVVGLVASRVK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449 E+ RP+ + D GS RS+ G I ++ G++ K GGHAMAAGL++ Sbjct: 376 ERTHRPTIVFAKMNDSTLKGSARSVSGLHIRNVLEAIAIKHPGLVTKFGGHAMAAGLSLP 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F + F + + + P DG L ++ + + L ++ GP+G P P Sbjct: 436 LERFDEFKEAFSREVNERLDEDDLQPRLVSDGELTSNELTLELALLMHEGGPWGQDFPEP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F KL + RVV HL++ + DS L IAF F + H+ Sbjct: 496 LFDGR-FKLINQRVVGQRHLKLILQVPDSNYYLDGIAFHADLEQWPNFHCEYA----HLA 550 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L VN ++G ++ QL V Sbjct: 551 YRLDVNEFQGRRKLQLLVEHIR 572 >gi|315268947|gb|ADT95800.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS678] Length = 574 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + L +R P + +AA I A+ ++ I+I Sbjct: 19 HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+++ITV Sbjct: 74 VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V++ DHH E A A+VNPN+ D + GV F Sbjct: 134 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253 Query: 273 -RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 VGRCRVGITALLEVAKRNPTRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 374 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + ++ + T DG L + +N+ + +L +AGP+G Sbjct: 434 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + R+V HL++ E+Q L AIAF V + + Sbjct: 494 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572 >gi|296104554|ref|YP_003614700.1| ssDNA exonuclease RecJ [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059013|gb|ADF63751.1| ssDNA exonuclease RecJ [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 577 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 176/566 (31%), Positives = 277/566 (48%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L +KA + A+ +I++ Sbjct: 21 DLPPLLKRLYASRGVRSA---GDLERSVKGMLP-WQQLNGIEKATEMLYNALREGTRIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALSVLSLRALGCENVTYLVPNRFEDGYGLSPEVVDQAHARGAQMILTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A GI V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVDHAHQLGIPVLVTDHHLPGDTLPAAEAIINPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +LR +L LDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTLLRDKGWFESRGIAVPNLAEYLDLVALGTVADVVPLDTNNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEIANRDPLKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSGETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGLMLKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + + DG L + + + ML AGP+G P Sbjct: 437 LEEAKFDEFQRLFGELVTDWIDPALLQGEVISDGELAPMEMTMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + Sbjct: 497 EPLFDGR-FRLLQQRIVGERHLKVMVEPVGGGPLLDGIAFNVDTAVWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + + P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|160876747|ref|YP_001556063.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS195] gi|160862269|gb|ABX50803.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella baltica OS195] Length = 577 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 272/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + L +R P + +AA I A+ ++ I+I Sbjct: 22 HLSPLLKQLYARRGALSHECELVLKGLLR-----PETMKGLPEAAALIADAMQANKSILI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+++ITV Sbjct: 77 VGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVAVAASKQAEMLITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V++ DHH E A A+VNPN+ D + GV F Sbjct: 137 DNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCPFASKSIAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 197 YLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 256 Query: 273 -RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 257 VGRCRVGITALLEVAKRNPTRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 317 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQEDWHQGVIGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 377 IKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + ++ + T DG L + +N+ + +L +AGP+G Sbjct: 437 LKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQLLRNAGPWGQAFE 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + R+V HL++ E+Q L AIAF V + + Sbjct: 497 EPLFDGY-FTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATIHHA----R 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 552 IVYKLDVNEYRGNFSLQLMVEQIE 575 >gi|312171248|emb|CBX79507.1| Single-stranded DNA-specific exonuclease [Erwinia amylovora ATCC BAA-2158] Length = 572 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 194/560 (34%), Positives = 279/560 (49%), Gaps = 17/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ +R VS L R L P L+ D+A + +A+ ++ IMI Sbjct: 21 DLHPLLRRLYAHRGVSRA---CELERGARNLHP-FQSLSGIDQAVTILQKALLDNLCIMI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TV Sbjct: 77 VGDFDADGATSTALTVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAVRGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A +GI VIV DHH A A+VNPN D L GV F Sbjct: 137 DNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275 +++ + LR D L +L LLDLVAL TV DVVPL NR V +GL R + Sbjct: 197 YLMLALRARLRDDGVNTL-PNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+S+D + MLA Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLAQARMLAS 315 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + + I + WH G+VG+LA+RLKE+ Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESASEALPLGIAMYHPEWHQGVVGILASRLKER 375 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + DG GSGRSI G + ++ G++VK GGHAMAAGL+++ Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTLHPGLIVKFGGHAMAAGLSLQEA 435 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + A V DG L A + + ++L AGP+G P P F Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLRDAGPWGQAFPEPTF 495 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 KL R+V HL++ E L IAF V + K++ + Sbjct: 496 DGK-FKLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTALWPD----PAVKQVELAYK 550 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL + Sbjct: 551 LDVNEYRGNRNVQLIIDHLW 570 >gi|148260299|ref|YP_001234426.1| single-stranded-DNA-specific exonuclease RecJ [Acidiphilium cryptum JF-5] gi|146401980|gb|ABQ30507.1| exonuclease RecJ [Acidiphilium cryptum JF-5] Length = 594 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 229/592 (38%), Positives = 328/592 (55%), Gaps = 11/592 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 GVE S++G RW+ A AI Q+ +P+++ R+L R V D+A DFL P+ Sbjct: 10 PAFGVERSLTGRRWLWRP--AADRTAQAIAQRCGVPEVIGRLLAGRGVMPDHAADFLEPT 67 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R +PDP LTD D AA RI ++ I IFGDYDVDGA S ALM L Sbjct: 68 LRAYLPDPSALTDMDAAAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTI 127 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 Y+PDR+ +GYGPN + +GA+LI+ VDCG+ +++AL + D IV+DHH+ Sbjct: 128 NYVPDRLREGYGPNAPALRALAGQGAELIVCVDCGTAAHEALAALDGR-ADAIVLDHHKS 186 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242 + A VNPNR DD SG G++CAA + FL LV + R LR+ DLLS+L Sbjct: 187 EGAPPAIVATVNPNRADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRREIDLLSML 246 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALATVCDV+PL GLNRA V +GL V R+ PG+ AL++ + G+ IG Sbjct: 247 DLVALATVCDVMPLTGLNRALVTQGLKVMARRERPGIAALLDVAQVREAPGTMTCGFAIG 306 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GRI E++LG R L++ + +LA +LD +N+ R+ +E+ +L++A Q Sbjct: 307 PRINAAGRIAEADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEAQF 366 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 A V +V G++WHPG+VG++A R+KE F RP+ + +G+ +GSGRS+ G D+G Sbjct: 367 AA--GAPVALVAGEQWHPGVVGIVAGRIKETFNRPALV-AGIAEGRAVGSGRSVPGVDLG 423 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + A E G+L+KGGGHAMAAG TVE L F + + L I+G+ Sbjct: 424 SAIIAAREAGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLA-VAATLPDAADLPIEGM 482 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSET 540 ++ AL + GP+GAGN PVF P ++ + ++ E + Sbjct: 483 AAVGGIDEALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGGR 542 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L+ I FR L L + G +++ GH+ W G L ++DA+P Sbjct: 543 LKTILFRAGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAPA 594 >gi|294634842|ref|ZP_06713364.1| single-stranded-DNA-specific exonuclease RecJ [Edwardsiella tarda ATCC 23685] gi|291091715|gb|EFE24276.1| single-stranded-DNA-specific exonuclease RecJ [Edwardsiella tarda ATCC 23685] Length = 565 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 274/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ NR V L ++ L+P L+ + A + + + ++I Sbjct: 10 LPPLLRRLYANRGVRSA---TELERGVKGLLPY-ASLSGIEAAVALLQEVLEQRLHLVIV 65 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + +P+R DGYG +P ++ + GA++I+TVD Sbjct: 66 GDFDADGATSTALSVLALRAMGCDHVQYLVPNRFEDGYGLSPEVVAQAAEMGAEMIMTVD 125 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A+VNPN D L GV F Sbjct: 126 NGVSSHAGVEAAHARGIRVLVTDHHLPGETLPAAEAIVNPNLADCAFPSKSLAGVGVAFY 185 Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR- 272 +++ + R L +L LLDLVAL TV DVV L NR V +GL R Sbjct: 186 LMLALRRHLIDQGWFERLGRPAPNLAELLDLVALGTVADVVALDSNNRILVHQGLSRIRV 245 Query: 273 RQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E + +TA +LG+ +GP +NA GR+ + +LG LL+S+D + Sbjct: 246 GRCRPGIRALLEVAKRDAARLTAGDLGFALGPRLNAAGRLDDMSLGVALLLSEDMPQARA 305 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA LD LNQ RR +E M +A A + + + + + WH G+VG++A+R+ Sbjct: 306 LACDLDNLNQTRREIEQGMQSEALAICASLERTLTELPYGLALYHPEWHQGVVGIVASRI 365 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGLT+ Sbjct: 366 KERFYRPVIAFAPAGDGLLKGSGRSLPGLHMRDALERLDTLHPGLMLKFGGHAMAAGLTI 425 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + V DG L + + + + L AGP+G P Sbjct: 426 EADRFEDFRRHFATLVGEWLDPAQLEGVVWSDGALGGDELTLPVAEQLREAGPWGQAFPE 485 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF V T + + + + + Sbjct: 486 PTFDGC-FRILQQRLVGERHLKLMLEPLAGGPLLDGIAFNVDTTLWPD----ASVREVEL 540 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 541 AYRLDVNEYRGNRSVQLMIEHLWP 564 >gi|113461615|ref|YP_719684.1| single-strand DNA-specific exonuclease [Haemophilus somnus 129PT] gi|112823658|gb|ABI25747.1| exonuclease RecJ [Haemophilus somnus 129PT] Length = 573 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 18/563 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ P +L A +V A +KI+I G Sbjct: 19 HPLLDRIYRARQIKNPQQ---LDRTLKSMLA-PDLLHGIGSAVDLLVTAREKQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+DVDGA S AL++ L + + +P+R GYG + + + + + +L+ITVD Sbjct: 75 DFDVDGATSTALIVLALRQLGFTDVDYLVPNRFEQGYGLSVEVAKLALEKNVELLITVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + N G+ V++ DHH PA+A+VNPN L GV F V Sbjct: 135 GVSSFDGVVFLKNAGVQVLITDHHLPPEILPPAHAIVNPNLTQCNFPSKFLAGVGVAFYV 194 Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + LR + LLDLVAL T+ DVVPL NR +GL + + Sbjct: 195 MLALRAKLRDLGIFTTQTQPNFTELLDLVALGTISDVVPLDQNNRILAYQGLARIRAERC 254 Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL E N + +TA +LG+ IGP +NA GR+ ++G LL++DD Q LA Sbjct: 255 RPGIRALAEIANRNMSRLTASDLGFSIGPRLNAAGRLDNMSVGVELLLADDMQHARQLAF 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M ++A +Q + IV+ WH G++G+LA+R+K+K Sbjct: 315 ELDSLNQARKEIEQGMKQEALEICRNLTALSKQLPLGIVLYQVDWHQGVLGILASRIKDK 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP+ A + ++ G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 FHRPTIAFAQDQVGILKGSARSIEGLHMRDVLERIHSRYPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F + F + + + DG L + +N+ ++L AGP+G G P P F Sbjct: 435 LFTQFQQAFIQTVTEWLKEEQLQGIIWTDGQLAPAFLNLETAELLRQAGPWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 + +V HL+M E Q L AIAF + +F + K + Sbjct: 495 DGE-FTILRQSIVGEKHLKMLVEPKQGGPLLDAIAFNIDKDYYPDFSI----KHARIAYK 549 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 L N +RG++ QL V P++ Sbjct: 550 LDSNEFRGNRHVQLLVDYIEPLD 572 >gi|299142696|ref|ZP_07035826.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris C735] gi|298575911|gb|EFI47787.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris C735] Length = 584 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 161/585 (27%), Positives = 277/585 (47%), Gaps = 22/585 (3%) Query: 16 FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +A + K AI I+A++L+ R + + AK F P + L+ +P Sbjct: 3 FKWNYEPPTPEERQAADELGGKLAINPILAQLLIRRGIKTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + + G +LII +DCG + ++ A + GID I+ DHH + PA A Sbjct: 122 GYGVSEKGIGYAKQTGVKLIIILDCGIKAIKEIELAKSLGIDFIICDHHVPDEQMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKREDDSFPFKHLCGCGVGFKFMQGWAK-----NNGIPFSRLIPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+ NR GL + + GLKA+I+ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVTEENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A +D N+ R+ ++ M E+A ++++ + + S IV Sbjct: 297 NGKESVDLLVEKDYNIALRKAKHIDEYNEQRKDIDKQMTEEANV-IVSKLESQKYHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDLATGSARSVTGFDVYAAIKHC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT+ + FQ++ + + T +D L+ + L Sbjct: 413 LLMNFGGHTYAAGLTLRWDDIPLFRKRFQQYVEDHIAPEQTEATIHLDAQLDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G P+F + +VV H+++ + S + IAF Sbjct: 473 YNDLKRFAPFGPECTKPLFFTQGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + + N ++ ++ QL++ D P E Sbjct: 533 SAS----ARYIKSKRSFDIAYTIEANVFKHNQ-VQLQIEDIRPGE 572 >gi|253988694|ref|YP_003040050.1| ssDNA exonuclease RecJ [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637982|emb|CAR66610.1| ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780144|emb|CAQ83305.1| ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj) [Photorhabdus asymbiotica] Length = 577 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 283/564 (50%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ R+ R + + L S++ L+ + L+ +A ++ A++ +I+I Sbjct: 22 IHPLLRRLYAIRGI---QQANELERSVQGLL-NYQHLSGVQQAVSLLLAALHEHWRIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL +R L N + +P+R DGYG +P ++E+ + +GA LIITVD Sbjct: 78 GDFDADGATSTALAIRSLRAMGYRNLDYLVPNRFEDGYGLSPQVVEEVVKKGADLIITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+D + A + VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHDGVAAAHQHQMKVIVTDHHLPGEILPAADAIINPNLSDCSFPSKSLAGVGVTFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + LR++ +L +LDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMSALRAALRKEQWFEKQGVALPNLAEMLDLVALGTVADVVPLDTNNRILVYQGLNRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G++AL+E + +TA +LG+ +GP +NA GR+ + ++G LL++DD + Sbjct: 258 GRCCAGIRALLEVSKRDAHKLTASDLGFFLGPRLNAAGRLDDMSIGVALLLTDDIAKARQ 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E M ++A + + + + WH G+VG+LA+R+ Sbjct: 318 IACELDGLNHTRREIEQGMQQEALQICDKLERTSTELPYGLALYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS++G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSVQGLHMRDALERLDTLNPGLILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E+ F + F + + V DG L + + + +ML GP+G P Sbjct: 438 EQDKFEQFQHHFSVLMADWLDISQLEGVIWSDGELAIGELTLEMAEMLRDGGPWGQAFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 PVF KL R+V HL++ E L I F + T + + + + + Sbjct: 498 PVFDGK-FKLHQQRIVGERHLKVIVEPLNGGPMLDGIVFNIDPTRWPD----NSVRAVEL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 553 AYKLDVNEFRGNRDVQLLIQHLWP 576 >gi|37678851|ref|NP_933460.1| ssDNA exonuclease RecJ [Vibrio vulnificus YJ016] gi|320157370|ref|YP_004189749.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio vulnificus MO6-24/O] gi|37197592|dbj|BAC93431.1| single-stranded DNA-specific exonuclease [Vibrio vulnificus YJ016] gi|319932682|gb|ADV87546.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio vulnificus MO6-24/O] Length = 579 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 172/569 (30%), Positives = 277/569 (48%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++PDI+ R+ +NR + L +++ L L + A + +AI ++I++ Sbjct: 18 SVPDILKRIYLNRGI---QDISQLETAVKGLHSY-QKLHGIELAVALLFEAIREQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++E+ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVEQAIALGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA G+ V+V DHH A+VNPN L GV F Sbjct: 134 DNGVSSIEGVRYAKEHGLKVLVTDHHLPGQVLPEVDAMVNPNLQTCAFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRQCGWFAEQGMAEPKLMELVDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 254 AGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLMCNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAM--LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M A + L ++ + + + WH G++G+LA+ Sbjct: 314 RMAHELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DG GS RSI G + + G+++K GGHAMAAGL Sbjct: 374 RIKEKYHRPVIAFADGGDGYIKGSCRSIPGLHMRDALDLIDTQNPGLILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ +F R F + + + DG L ++ ++L SAGP+G Sbjct: 434 TIKECDFERFSQLFDQLVKRELDEAALKGIVLSDGELKPEEFSMHTAELLRSAGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ ++V HL++ E + + IAF V + + Sbjct: 494 PEPIFDGE-FKVLHQKLVGEKHLKLMLEPLFKGYPTNIMIDGIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +R ++ QL + Sbjct: 549 VKTVRLAYKLDINEFRNNQSLQLMIEHIE 577 >gi|224025992|ref|ZP_03644358.1| hypothetical protein BACCOPRO_02743 [Bacteroides coprophilus DSM 18228] gi|224019228|gb|EEF77226.1| hypothetical protein BACCOPRO_02743 [Bacteroides coprophilus DSM 18228] Length = 573 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 171/585 (29%), Positives = 277/585 (47%), Gaps = 22/585 (3%) Query: 15 GFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 ++W QE A A++++ I I+ +L R + AK F P + L +P Sbjct: 2 NYKWNYQPPTQEQREAARALSKELGINPILCHLLRERGIDSAAEAKRFFRPQLSELH-NP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D + A R+ +A+ E+I+I+GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FLMKDMNIAVERLNRAMGKKERILIYGDYDVDGTTAVALVYKFLQQFYSNIDYYIPDRYN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G +LII +DCG + + YA +GID I+ DHH A Sbjct: 121 EGYGVSKKGVDYAYETGVKLIIVLDCGIKAVKEIAYAKEKGIDFIICDHHVPDEVLPQAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP R D HL GV F + N L LLDLVA++ D Sbjct: 181 AILNPKRHDSTYPYHHLSGCGVGFKFMQAFA-----LNNGIEFHQLTPLLDLVAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 236 IVPIMGENRILAYHGLRQLNSNPSIGLKAIIDVCGLAERDITMSDIVFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LLI D Q+ + +++ N+ R+ ++ +M E+A K++ Q D+ Q I Sbjct: 296 QNGKEAVDLLIEKDFQQALEKSNRINRYNETRKDLDKSMTEEA-NKIVDQLSDLSQRRTI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WH G++G++A+RL E + RP+ ++ + G GS RS+ GFD+ K + Sbjct: 355 VIYNEAWHKGVIGIVASRLTEIYYRPAVVLTRTD-GLATGSARSVSGFDVYKAIENC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+ + + + T+ ID L+ + Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFTRRFEDYVTSHILPEQTSATINIDAQLDFRDITPK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L+ P+G N PVFA N + +VV H+++ + + + IAF Sbjct: 472 FFFDLKKFNPFGPDNHKPVFATLNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + ++ + N + QL++ D P Sbjct: 532 QS----SQARYIKTKQSFNICYTIEENTHK-RGEIQLQIEDIKPS 571 >gi|254447063|ref|ZP_05060530.1| single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium HTCC5015] gi|198263202|gb|EDY87480.1| single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium HTCC5015] Length = 582 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 182/569 (31%), Positives = 284/569 (49%), Gaps = 24/569 (4%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 + ++P +V R+L R VS + +++ L P +L ++A +R+ + + + Sbjct: 23 EDPSLPPLVDRILRTRGVSTVEQCQY---TLKRLHA-PDLL-GMERACQRLYEVLEQQQS 77 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 ++I GDYD DGA S A+++R L + + +P+R GYG +P ++E ++ Sbjct: 78 VIIVGDYDADGATSTAVLIRALKALGLKRIDYLVPNRFDYGYGLSPEIVEVAAQGKPDVL 137 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 ITVD G +S + + A GIDVIV DHH S A A+VNPN +D HL G Sbjct: 138 ITVDNGISSIEGVARANQLGIDVIVTDHHLPGSVLPQALAIVNPNLENDPFPSKHLAGVG 197 Query: 214 VVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 VVF +L+ + LR + +L LDLVAL TV DVV L NR V +GL Sbjct: 198 VVFYLLIALRAYLRDNGWFEARGVAPLNLAESLDLVALGTVADVVRLDENNRILVDQGLK 257 Query: 270 VARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R Q PG+ AL++ + + A +LG+ +GP +NA GR+ + +LG L++DD+ Sbjct: 258 RIRSGQCCPGINALLQVAKRKANQLQAADLGFAVGPRLNAAGRLDDMSLGIECLLTDDAS 317 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ---ASVIVVEGDRWHPGIVG 384 E +A LD +N RR +E M +QA + ++ + + V + WHPG+VG Sbjct: 318 RAEEIAAALDGINHERRQIEQTMKDQAFKALERLEASLEGQALPAALSVFEENWHPGVVG 377 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAM 442 ++AAR+KE+F RP A + E D GS RSI G I + G++ K GGHAM Sbjct: 378 IVAARVKERFHRPVIAFARESDDVVKGSARSIAGLHIRDALERVNSQHPGLIQKFGGHAM 437 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AAGL++ N F + + DG L+ + +++ + L+ GP+ Sbjct: 438 AAGLSLPEKNLASFRQAFAAVVAEQLGESVGQRELHTDGGLSGDEMTLSMAECLQQYGPW 497 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 G G P P F ++ R+V HL+M D ++ AIAF G L + Sbjct: 498 GQGFPEPRFDGE-FEIVDQRIVGQHHLKMVLRHPDGPSIDAIAFNETGEHL------TGA 550 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 +R+ L +N +RG + QL++ P Sbjct: 551 QRIRAVYALDINEFRGQRSVQLKIDYLEP 579 >gi|258620861|ref|ZP_05715895.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus VM573] gi|258586249|gb|EEW10964.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus VM573] Length = 579 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 178/568 (31%), Positives = 276/568 (48%), Gaps = 25/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ R+ +NR V L + + L L ++A + AI ++I++ Sbjct: 19 IAPLLRRLYLNRGVRD---IAQLEKAAKALH-SFKQLHGIERAVELLFAAIAEQKRIIVV 74 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TVD Sbjct: 75 GDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + ++YA +G+ V+V DHH E A+VNPN L GV F Sbjct: 135 NGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + +RQ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 195 LIMALCVHMRQQGWFAAQGIAEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 254 Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++ALIE + A + G+ +GP INA GR+ + + G LL+ ++ Sbjct: 255 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 314 Query: 332 LAMKLDVLNQNRRLMES--AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ R+ +E A + L DD + +V+ WH G++G+LA+R Sbjct: 315 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEK+ RP A + DGK GS RS+ G + + GI++K GGHAMAAGLT Sbjct: 375 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E NF R C F + + DG L ++ +ML + GP+G P Sbjct: 435 IEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTAEMLRAGGPWGQAFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + + IAF V + + Sbjct: 495 EPLFDGE-FKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPD----ASV 549 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RGS+ QL + Sbjct: 550 KTVRLAYKLDINEFRGSQSLQLMIDHIE 577 >gi|120555186|ref|YP_959537.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter aquaeolei VT8] gi|120325035|gb|ABM19350.1| exonuclease RecJ [Marinobacter aquaeolei VT8] Length = 577 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 178/566 (31%), Positives = 286/566 (50%), Gaps = 21/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P I+ R+ R V D + +++ L P+ L D+A + +AI +++M+ Sbjct: 21 NLPPILRRLYAARGVQSDDQLQY---TLKHL-ASPMQLRGIDRAVELLAEAIVQKQRVMV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEG--AQLII 154 GD+D DGA S ++ M LS + +P R DGYG P ++ + +G L++ Sbjct: 77 LGDFDADGATSTSVAMLGLSMLGVAAIDFRVPSRFSDGYGLTPGIIHRLQEDGDLPDLLV 136 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G ++ + ++ A GI V++ DHH E A A+VNPN+ + GV Sbjct: 137 TVDNGISAIEGVRAARELGIKVVITDHHLAGEELPDADAIVNPNQPGCPFLSKNAAGVGV 196 Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +F VL + + LR +N++P +L SLLDLVA+ TV DVVPL NR +V +G+ R+ Sbjct: 197 MFYVLTALRKHLRDNNRLPDPEPNLGSLLDLVAVGTVADVVPLDHNNRIFVEQGIRRIRK 256 Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG+ AL+E I+A +LG+++GP +NA GR+ + ++G L++D E Sbjct: 257 GEARPGILALLEVAGRDYTEISATDLGFVVGPRLNAAGRLDDMSIGIACLLADSRDEALR 316 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390 LA +LD N+ RR +E M QA+ + + DI + WH G++G+LAAR+ Sbjct: 317 LARELDNFNRERRTIEKDMKAQAQDLLASMSLDIDGLPWGLALFDQDWHQGVIGILAARI 376 Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLT 447 +E+ RP+ A + ++DG+ GS RSI G I ++ A G++ K GGHAMAAG+T Sbjct: 377 REQTHRPTIAFAPDDDGEHLKGSARSIPGLHIRDALAVVDAKNPGLMKKYGGHAMAAGMT 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + R + + F + + + DG L +N+ +L+ AGP+G P Sbjct: 437 IARDDLACFSNAFDQAVRDTLKPEDLEAAITTDGPLAPEELNLDTAYLLKRAGPWGQHFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 PVF ++ S R+V HL++ + + + IAF G + +F Sbjct: 497 EPVFDGE-FRVVSQRIVGENHLKLVLQPVEGGGIIDGIAFN-TGPEVPDFTRSGA----R 550 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 V N +RG QL V P+ Sbjct: 551 VVYKPDANTFRGRTNLQLLVDYLEPL 576 >gi|307243796|ref|ZP_07525927.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus stomatis DSM 17678] gi|306492799|gb|EFM64821.1| single-stranded-DNA-specific exonuclease RecJ [Peptostreptococcus stomatis DSM 17678] Length = 827 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 183/579 (31%), Positives = 298/579 (51%), Gaps = 23/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W L QE + + +I + ++L+NR + S D + F +PS++ L DP + Sbjct: 2 KKWNILHRQEPSRN--DLMESMSISKEIGQILLNRGIESQDQVEMFTDPSLKYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI EKI IFGDYDVDG +S ++M+ + + YIP+R+ +G Sbjct: 59 LKDMDKAVERIRQAISRKEKIWIFGDYDVDGVSSTSIMVLYFKSIGYPVDYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ ++ +LIITVDCG TS ++YA GIDVI+ DHH+ + AYA+ Sbjct: 119 YGLNIEAIDHIGSQDGRLIITVDCGITSVKEVEYARGLGIDVIITDHHECQESLPAAYAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P R D +C GV F ++ + ++ L++V+LAT+CD++ Sbjct: 179 VDPKREDCSYPFEGICGCGVAFKLIHAL------SGNEDFYKNINRYLEIVSLATICDIM 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 P++ NR V G+ + + N G+KAL+E + + I + +LG+ IGP INA GR+G Sbjct: 233 PILDENRIIVKNGMEILGQGNNIGMKALLEVCGLDGTKIKSSHLGFAIGPRINASGRLGF 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 SNLG L SD+ QE LA+ +D N R+ +E+ + + E + ++ + V+VV Sbjct: 293 SNLGVDLFTSDNLQEARNLALMMDTKNTERQEVEARIHMEVEDII-SKDPSYRDDKVLVV 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH GI+G++A+++ EK+ +P + EE +GS RSI+GFDI + Sbjct: 352 SGEDWHHGIIGIVASKVTEKYYKPCILL-CEEGDIAVGSARSIKGFDIFSALYEC--RDY 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH AAG+++E G L + + A+ + V +++ ++ S++N+ L+ Sbjct: 409 MTKFGGHQQAAGMSMEVAKIGLLREKINQIANYELDQEDLVEVIRVEYEIDQSSLNLDLV 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + L P+G NP P F L+ + + HL+M E I F + Sbjct: 469 ENLHLLEPFGIKNPTPYFMLRKCLLKRLMTIGRDKNHLKMVVEKD--MEFDVIGFNMAHL 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + + + N + QL + D Sbjct: 527 GTDY----QEGDLVDLVFQVDSNTFNNKTSLQLLLKDMR 561 >gi|281425177|ref|ZP_06256090.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris F0302] gi|281400643|gb|EFB31474.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella oris F0302] Length = 584 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 162/587 (27%), Positives = 277/587 (47%), Gaps = 22/587 (3%) Query: 16 FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +A + K AI I+A++L+ R + + AK F P + L+ +P Sbjct: 3 FKWNYEPPTPEERQAADELGGKLAINPILAQLLIRRGIKTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + + G +LII +DCG + ++ A + GID I+ DHH + PA A Sbjct: 122 GYGVSEKGIGYAKQTGVKLIIILDCGIKAIKEIELAKSLGIDFIICDHHVPDEQMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRKDDSFPFKHLCGCGVGFKFMQGWAK-----NNGIPFSRLIPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+ NR GL + + GLKA+I+ ++ ++ ++ + IGP INA GR+ Sbjct: 237 VPVTEENRILAFHGLKQLNQNPSIGLKAIIDICGLNGRELSMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A +D N+ R+ ++ M E+A ++ + + + S IV Sbjct: 297 NGKESVDLLVEKDYNIALRKAKHIDEYNEQRKDIDKQMTEEANV-IVAKLESQKYHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDLATGSARSVTGFDVYAAIKHC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT+ + FQ++ + + T +D L+ + L Sbjct: 413 LLMNFGGHTYAAGLTLRWDDIPLFRKRFQQYVEDHIAPEQTEATIHLDAQLDFKDITKKL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G P+F + +VV H+++ + S + IAF Sbjct: 473 YNDLKRFAPFGPECTKPLFFTQGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + N ++ ++ QL++ D P E H Sbjct: 533 SAS----VRYIKSKRSFDIAYTIEANVFKHNQ-VQLQIEDIRPGEEH 574 >gi|326403489|ref|YP_004283571.1| single-stranded-DNA-specific exonuclease RecJ [Acidiphilium multivorum AIU301] gi|325050351|dbj|BAJ80689.1| single-stranded-DNA-specific exonuclease RecJ [Acidiphilium multivorum AIU301] Length = 594 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 229/592 (38%), Positives = 328/592 (55%), Gaps = 11/592 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 GVE S++G RW+ A AI Q+ +PD++ R+L R V D+A DFL P+ Sbjct: 10 PAFGVERSLTGRRWLWRP--AADRTAQAIAQRCGVPDVIGRLLAGRGVMPDHAADFLEPT 67 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 +R +PDP LTD D AA RI ++ I IFGDYDVDGA S ALM L Sbjct: 68 LRAYLPDPSALTDMDAAAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTI 127 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 Y+PDR+ +GYGPN + +GA+L++ VDCG+ +++AL + D IV+DHH+ Sbjct: 128 NYVPDRLREGYGPNAPALRALAGQGAELVVCVDCGTAAHEALAALDGR-ADAIVLDHHKS 186 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242 + A VNPNR DD SG G++CAA + FL LV + R LR+ DLLS+L Sbjct: 187 EGAPPAIVATVNPNRADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRREIDLLSML 246 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVALATVCDV+PL GLNRA V +GL V R+ PG+ AL++ + G+ IG Sbjct: 247 DLVALATVCDVMPLTGLNRALVTQGLKVMARRERPGIAALLDVAQVREAPGTMTCGFAIG 306 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GRI E++LG R L++ + +LA +LD +N+ R+ +E+ +L++A Q Sbjct: 307 PRINAAGRIAEADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEAQF 366 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 A V +V G++WHPG+VG++A R+KE F RP+ + +G+ +GSGRS+ G D+G Sbjct: 367 AA--GAPVALVAGEQWHPGVVGIVAGRIKETFNRPALV-AGIAEGRAVGSGRSVPGVDLG 423 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + A E G+L+KGGGHAMAAG TVE L F + + L I+G+ Sbjct: 424 SAIIAAREAGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLA-VAATLPDAADLPIEGM 482 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSET 540 ++ AL + GP+GAGN PVF P ++ + ++ E + Sbjct: 483 AAVGGIDEALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGGR 542 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L+ I FR L L + G +++ GH+ W G L ++DA+P Sbjct: 543 LKTILFRAGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAPA 594 >gi|254513972|ref|ZP_05126033.1| single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium NOR5-3] gi|219676215|gb|EED32580.1| single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium NOR5-3] Length = 576 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 185/584 (31%), Positives = 283/584 (48%), Gaps = 22/584 (3%) Query: 21 LLGQEGINRALAITQKHA-IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCD 79 + R Q + I+ARV R V+ L+ S+ L P P +L D Sbjct: 3 RPSRNIRRREFDGAQSLGDLSPILARVYAARGVTDP---GELDLSLAALHP-PELLAGLD 58 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPN 138 A R+ QA+ ++E+I+I GD+D DGA S AL + L + +P+R GYG Sbjct: 59 AATERLQQALEHNERILIVGDFDADGATSTALAIAALRQFGATQLDYLVPNRFEFGYGLT 118 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++ LIITVD G +S D + A GI+V++ DHH E A +V+PN Sbjct: 119 PGIVALAGQRKPDLIITVDNGISSIDGVAAANAAGIEVLITDHHLPGQELPAARVIVDPN 178 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVV 254 + L GV+F +L+ + LR + L S LDLVAL TV DVV Sbjct: 179 QAGCSFPSKALAGVGVMFYLLLALRTRLRDQDWFVKRGLEEPHLGSFLDLVALGTVADVV 238 Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 PL NR V GL R + PG+ AL+ + A +LG+ GP +NA GR+ Sbjct: 239 PLDHNNRILVEGGLARMRSGRARPGINALLSVAGRDPSAVVASDLGFAAGPRLNAAGRLD 298 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM-LEQAEAKVLTQCDDIQQASVI 371 + +LG L+ +DS + +A++LD +N+ R+ +E M E A D + + Sbjct: 299 DMSLGIECLLCEDSAQARNIALQLDSMNRERQRIERGMEQEALAALAGLDLRDSDLPAAL 358 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429 V+ WH G+VG+LA+R+K++F RP A + ++G+ GSGR I G + ++ + Sbjct: 359 VLHDPGWHQGVVGILASRIKDRFHRPVIAFARSDEGELKGSGRGIPGMHLRDLLDWVATQ 418 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 G++ + GGHAMAAGL++ ++ + + F L PV + DG L + Sbjct: 419 HPGLIDRFGGHAMAAGLSLPAAHYDQFAEAFTAAV-EQSGGLNLEPVIESDGELAPQDFD 477 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRV 548 +A +ML AGP+G P P+F +L+S R+V HL+M+ + D L+AIAF V Sbjct: 478 LATAEMLRRAGPWGQLFPEPLFDG-VFELRSQRIVGERHLKMSLSKPGDGALLEAIAFGV 536 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++ + L VN +RG + QL V Sbjct: 537 DTDRWPDL----SVTQVRLAYRLDVNQFRGERSLQLLVEQIEAA 576 >gi|312898882|ref|ZP_07758270.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera micronuciformis F0359] gi|310620044|gb|EFQ03616.1| single-stranded-DNA-specific exonuclease RecJ [Megasphaera micronuciformis F0359] Length = 660 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 179/578 (30%), Positives = 290/578 (50%), Gaps = 24/578 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 RW+ + + ++ I ++AR LVNR ++ AK FL S+ L DP ++ Sbjct: 4 RWIY--AEPSQKTVRQLQEQLHISSLLARTLVNRGITDSTDAKHFLYDSMSSLY-DPFLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D K A RI+ AI E+I+++GDYDVDG S AL+ R L + YIP+R +GY Sbjct: 61 KDVRKGAERILTAIERGERIVVYGDYDVDGITSTALVYRSLCDLGADPAFYIPERQSEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +E+ + + ++IITVDCG +S ++ D+I+ DHH+ YA++ Sbjct: 121 GLNRDALEELVRDKTEVIITVDCGISSAKLVKEFNT-QTDIIITDHHEPSEHIPEGYAVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP + D + L GV + + + + + + LVAL TV D+VP Sbjct: 180 NPKQKDCMYPYKELAGVGVAYTLCRALRMLAGKTDG-------EKYTSLVALGTVADLVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L G NR V GL N G++ALI+ + + I+A N+ + + P +NA GRI + Sbjct: 233 LTGENRILVADGLSRIAEGDNCGIQALIKTAGLDATKISAGNIAFSVAPRLNAAGRISHA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 G LL+ DS + + A +L LN R+ +E A+ A +V + + V+VV Sbjct: 293 EKGVFLLLEKDSDKAKETAEELHDLNTQRQEIEWAITTAAIDEVENEGY--EDDHVLVVA 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 GD WH G++G+ A+RL EK+ +PS IS ++ G G GS RSI GF++ + ++ E +L Sbjct: 351 GDGWHSGVIGIAASRLIEKYYKPSLVISLKD-GVGKGSCRSITGFNMYEALNSCKE--LL 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGHAMAAG +V + N L + ++A + PV +D V+ + + + Sbjct: 408 IQFGGHAMAAGFSVAQENIDALREQLNEYALRHLTEKDYIPVLNVDSVVAGEDITVDTVH 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L PYG GN P+F N L I+ + HL++ ES+D L + + + Sbjct: 468 ELSLLEPYGMGNTRPLFVLKNALLYDIKEIGRQKTHLRIVAESEDGCRLSGVGWSMADK- 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++++ R + + +N + QL + D Sbjct: 527 -ADYIL--RNDEVDLAFQPELNTYHDRTTAQLVLRDMR 561 >gi|224369267|ref|YP_002603431.1| RecJ [Desulfobacterium autotrophicum HRM2] gi|223691984|gb|ACN15267.1| RecJ [Desulfobacterium autotrophicum HRM2] Length = 572 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 176/577 (30%), Positives = 281/577 (48%), Gaps = 20/577 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + + + IVA +L NR V + + A FL P++ L P L D Sbjct: 6 EWKEKKSNSATVAGLEKALGCHRIVATLLANRGVKTPEAALAFLTPTMETL-TSPFSLKD 64 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 D+A RI+ AI N+E+I+IFGD+D DG + A++ FL+H + + YIP R +GYG Sbjct: 65 MDRAVERIILAIENNERILIFGDFDADGITATAVLNDFLTHVNGEISWYIPHRSKEGYGL 124 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + LI+TVDCGS S++A+ A + IDVIV DHH+V A A+VNP Sbjct: 125 KVEHIAMATEQQIDLIVTVDCGSDSFEAVDLARLEDIDVIVTDHHEVPDPAPRALAIVNP 184 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 + SG HL GV F +++ + +R+ +LL+ DLVAL T+ D+VP Sbjct: 185 KQKCCHSGLDHLAGVGVAFYLVIALRMEMRKRGMWQRFTEPNLLASCDLVALGTIADMVP 244 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314 L NR + G+ V RR PGL AL + I I ++++ + I P INA GR+ + Sbjct: 245 LTAENRVLTIAGIEVMRRGKRPGLSALFDVARIDVALIDSDDIAFRIAPRINAAGRMAHA 304 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LL S D + E A LD LN+ R+ E +++ E ++ Q + ++++ + Sbjct: 305 RICIDLLCSRDPRGAEQKADLLDQLNKKRQQTEQSIVADIERRISRQNGAPCKDALVMWD 364 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+++ K+ P IS GS RSI +I + L Sbjct: 365 SS-WHPGVLGIVASKISRKYVCPVVLISTANS-PATGSCRSINNINIHSALGQC--SDFL 420 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGHAMAAGLT++ N F+ +IV + ++D L V LI+ Sbjct: 421 ERFGGHAMAAGLTIQEKNMAAFSHHFENTIRSIVHGEPRKRILELDCALEIDTVTKELIE 480 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ---DSETLQAIAFRVYGT 551 ++S P+G GNP P+F + K+ ++ + H +M Q + A+ F + Sbjct: 481 AIDSLRPFGMGNPEPLFYCKDIKVTHSTIIGMRHRKMELAKQTNASGPCISAVHFNIDDL 540 Query: 552 P-LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 L + Q + + +N + G Q+ + Sbjct: 541 DCLPDHFEQ-------IAFRIRMNRFNGRFSPQIIIE 570 >gi|331006946|ref|ZP_08330191.1| Single-stranded-DNA-specific exonuclease recJ [gamma proteobacterium IMCC1989] gi|330419266|gb|EGG93687.1| Single-stranded-DNA-specific exonuclease recJ [gamma proteobacterium IMCC1989] Length = 585 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 182/577 (31%), Positives = 288/577 (49%), Gaps = 32/577 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ RV +R V D D+ ++ L+P P +L A R + A+ +K+MI Sbjct: 18 IHPLLQRVFSSRGVVDDDELDY---QLKNLLP-PSLLKGLPDAIRLLSNAVIQQQKVMIV 73 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + + +P+R GYG P ++E N LI+TVD Sbjct: 74 GDFDADGATSCALSILALRAMGLQQVDFLVPNRFEYGYGLTPEIVEVANNYQPDLIVTVD 133 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + ++ A + GI V+V DHH A A+VNPN+ +L GV+F Sbjct: 134 NGIASVEGVEKAKSLGIKVLVTDHHLPPDVLPNADAIVNPNQRGCDFPSKNLAGVGVIFY 193 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 VL + LR+ + + + LDLVAL TV DVVPL NR V +GL + Sbjct: 194 VLTALRTALREQDWFEEQGIKEPLMANYLDLVALGTVADVVPLDRNNRLLVQQGLQRIKA 253 Query: 274 QG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PGL ALI+ I++ + G++IGP +NA GR+ + ++G R L++DD Sbjct: 254 GHTRPGLLALIQVAGKDYQRISSSDFGFIIGPRLNAAGRLDDMSVGIRCLLTDDVDVAHE 313 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT----------QCDDIQQASVIVVEGDRWHPG 381 LA +LD LN++RR +ES+M +A + + + + S I + D WH G Sbjct: 314 LAAELDGLNRDRRAIESSMQREAIQYLESVVVESVVVEGEANTDTIPSGICLYNDSWHQG 373 Query: 382 IVGLLAARLKEKFGRPSFAISF--EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKG 437 +VG++A+R+KEK+ RP A + + GS RSI I ++ IL K Sbjct: 374 VVGIVASRIKEKYYRPVIAFAPSDVDSDFIKGSARSIPNLHIRDVLDSIATAHPAILQKF 433 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHAMAAGL++ + ++ + F + N++ + DG L++ +N+A+ ++ Sbjct: 434 GGHAMAAGLSLHKDDYAEFSELFNQAVENVLDPEDLQELMLSDGELSSGEINLAIAHAIQ 493 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS--ETLQAIAFRVYGTPLGE 555 AGP+G G P P+F + S R+V HL++ S + T+ AIAF V Sbjct: 494 QAGPWGQGFPEPLFDGEFF-IVSQRIVGEKHLKLVVSSDANAVHTVDAIAFNVDVEQWP- 551 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++ + L +N++RG + QL V + + Sbjct: 552 ---NNTVSKVRLAYQLSINFFRGQESVQLMVKHIAVL 585 >gi|300214762|gb|ADJ79178.1| Single-stranded-DNA-specific exonuclease [Lactobacillus salivarius CECT 5713] Length = 777 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 194/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + E + + ++ P IV ++L+ R + +FL+P R L DP Sbjct: 6 KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + RI QAI N EKI+I+GDYDVDG S ALM L YIPDR DG Sbjct: 64 MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRFKDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ I+EG LI+TVD G ++A+ YA G+DV+V DHH++ AYA+ Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + G L GV F V + L QD +LDLVAL TV D+V Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V GL + ++ PGL++L + I IT E +G+ + P +NA GR+ Sbjct: 233 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEAPTITEETIGFTLAPRLNALGRMEN 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LL + D + E LA + LN R+ + ++E+A A++ + + V VV Sbjct: 293 GSLGVELLTTLDEERAEELAKTTNQLNVKRQEEVNEIVEEAVAQLANKS---ENHLVNVV 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432 G+ WH G+VG++A+RL + G+PS +S +E G GSGRSIE F + + Sbjct: 350 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKAGIAKGSGRSIEAFQM--FDALDSHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH MA GL+++R L + T PV K+ +N VN+ L Sbjct: 408 ILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLDL 466 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 LE+ P+G NP PVF F ++++ +++ + HL++ +S +S+ + A+ F + Sbjct: 467 EAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + E + + G L N W+ Q+ + D Sbjct: 526 KKISEIERNKN--SVRLIGTLGKNVWQSRVNLQIMIEDI 562 >gi|227891087|ref|ZP_04008892.1| single-stranded-DNA-specific exonuclease [Lactobacillus salivarius ATCC 11741] gi|227866961|gb|EEJ74382.1| single-stranded-DNA-specific exonuclease [Lactobacillus salivarius ATCC 11741] Length = 788 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 194/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + E + + ++ P IV ++L+ R + +FL+P R L DP Sbjct: 17 KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 74 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + RI QAI N EKI+I+GDYDVDG S ALM L YIPDR DG Sbjct: 75 MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRFKDG 134 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ I+EG LI+TVD G ++A+ YA G+DV+V DHH++ AYA+ Sbjct: 135 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 194 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + G L GV F V + L QD +LDLVAL TV D+V Sbjct: 195 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 243 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V GL + ++ PGL++L + I IT E +G+ + P +NA GR+ Sbjct: 244 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEAPTITEETIGFTLAPRLNALGRMEN 303 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LL + D + E LA + LN R+ + ++E+A A++ + + V VV Sbjct: 304 GSLGVELLTTLDEERAEELAKTTNQLNVKRQEEVNKIVEEAVAQLANKS---ENHLVNVV 360 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432 G+ WH G+VG++A+RL + G+PS +S +E G GSGRSIE F + + Sbjct: 361 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQM--FDALDSHRD 418 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH MA GL+++R L + T PV K+ +N VN+ L Sbjct: 419 ILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLDL 477 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 LE+ P+G NP PVF F ++++ +++ + HL++ +S +S+ + A+ F + Sbjct: 478 EAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 536 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + E + + G L N W+ Q+ + D Sbjct: 537 KKISEIERNEN--SVRLIGTLGKNVWQSRVNLQIMIEDI 573 >gi|324115091|gb|EGC09056.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia fergusonii B253] Length = 577 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +IM+ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKYGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|301327293|ref|ZP_07220549.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 78-1] gi|300846156|gb|EFK73916.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 78-1] Length = 577 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ S + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPSEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|293570535|ref|ZP_06681590.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E980] gi|291609481|gb|EFF38748.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E980] Length = 765 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 176/590 (29%), Positives = 277/590 (46%), Gaps = 31/590 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R V Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFVH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I EG QLIITVD G DA+ YA G+DVI+ DHH++ + AYA Sbjct: 123 GYGPNQSVYQEKIQEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGQYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E + E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVALGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + E+A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASIQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRSIE ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F + +++ + HL+ + S+ L A+AF Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAANVKRIGANQQHLKFVLSDESSQ-LDAVAFGFGT 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E L+ + + V G L +N W G K+ QL V D + F + Sbjct: 523 QE--EELLNNL---VDVVGKLSINEWNGRKKPQLMVSDFAVGSLQVFDWR 567 >gi|260914422|ref|ZP_05920891.1| recombination protein J [Pasteurella dagmatis ATCC 43325] gi|260631523|gb|EEX49705.1| recombination protein J [Pasteurella dagmatis ATCC 43325] Length = 573 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 169/562 (30%), Positives = 274/562 (48%), Gaps = 18/562 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ RV R++ L+ ++ L+ P L ++A +V A EKI++ G Sbjct: 19 DPLLDRVYRARHIKNAKQ---LDRTLASLLH-PQDLYGIERAVNLLVSAYQQQEKIVVVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + IP+R GYG + ++ E+ + + QL++TVD Sbjct: 75 DFDADGATSTALTVLALRQLGFTDVEFLIPNRFEQGYGLSIAVAEQALEKNVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S D + + +G+ V++ DHH A A+VNPN +D L GV F + Sbjct: 135 GVSSVDGVAFLKQRGVKVLITDHHLPPEILPEADAIVNPNLVDCQFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GL + + Sbjct: 195 MLAVRAKFRELGVFTQQTQPNFTELLDLVALGTIADVVPLDQNNRILAYQGLARIRAERC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++AL E N S +A +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RCGIRALAEVANRDISQFSASDLGFSIGPRLNAAGRLDNMSVGVELLLAENMETARALAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ+RR +E M +A + I + WH G++G+LA+R+K++ Sbjct: 315 ELDSLNQSRREIEQGMKLEALEICRNLTALKQELPLGITLYQADWHQGVLGILASRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + +++G GS RS+EG + + +++K GGH+MAAGL++ Sbjct: 375 FHRPVVAFAQDQEGILKGSARSVEGLHLRDALERIHTKYPNMILKFGGHSMAAGLSIYES 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + + DG L ++ + + L+ AGP+G P PVF Sbjct: 435 EFAAFQQAFNQIVSEWLGEDKLQGIVWTDGELAGHQFSLEIAEALKEAGPWGQAFPEPVF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R+V HL+M E Q L AIAF V + + K + Sbjct: 495 DGE-FKILQQRLVGEKHLKMMVEPKQGGPLLDAIAFNVDTRYYPDMSI----KSAKLAYK 549 Query: 571 LCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL V P+ Sbjct: 550 LDINEFRGNRNIQLLVDYILPI 571 >gi|222153267|ref|YP_002562444.1| single-stranded-DNA-specific exonuclease [Streptococcus uberis 0140J] gi|222114080|emb|CAR42494.1| putative single-stranded-DNA-specific exonuclease [Streptococcus uberis 0140J] Length = 743 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 171/590 (28%), Positives = 280/590 (47%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 + W + + +K+ + ++ A++L R +S A D FL + L DP + Sbjct: 6 YDWKIEQEKPDDG-FFKLAKKNGLTELSAQILFERGISSQEAMDHFLRADLADLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI QAI N E+I+I+GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMEKAVNRIRQAIENYEQILIYGDYDADGMTSASIMKETLEMLGAEVLVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + F+N+ LI+TVD G + ++ + YA G+DVIV DHH + ++ A+A Sbjct: 124 YGPNLSVYKYFMNQEKVSLILTVDNGVSGHEGISYAQANGVDVIVTDHHSLPNQLPEAFA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + L GV F + + L+ LLDLVA+ T+ D+ Sbjct: 184 IIHPEHPNADYPFKKLAGCGVAFKLATAL-----------LDGVPTELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L+ + E +G+ + P +NA GR+ Sbjct: 233 VSLTDENRILVKNGLHVLKSSERVGLQELMALSQVDFDHFDEEVVGFKLAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E + +A ++ N+ R+ + + E+A A V TQ V V Sbjct: 293 DPNPAIELLTGFDEEEAQGIARMINGKNEERKALVQTIFEEAIAMVDTQ------KPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ + ++ E+G GS RSIE +I + + Sbjct: 347 LAKEGWHPGVLGIVAGRIMEETSQTVLVLA-IENGFAKGSARSIEAINI--FKALNHSKD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGH AAG+T+ N L + + KID L +++ Sbjct: 404 LLTAFGGHEGAAGMTLPVENIPLLSEALCHYVTENEIDWTVKNSLKIDHELQLEEISLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 I L P+G +P P+F + ++ R + HL+ + S + +AF Sbjct: 464 IKNLNLLAPFGMDHPQPIFLMKDFQVIQARTLGADNKHLKFRIR-KGSSEVDVLAFNQG- 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L + QS+G + + L VN W GS QL ++DA + + + Sbjct: 522 -HLLQEFQQSQG--LELAVTLSVNVWNGSTSLQLMLIDARVMGIQLYDIR 568 >gi|289565838|ref|ZP_06446280.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium D344SRF] gi|294614047|ref|ZP_06693976.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1636] gi|289162381|gb|EFD10239.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium D344SRF] gi|291593093|gb|EFF24673.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1636] Length = 765 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 177/581 (30%), Positives = 276/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I EG QLIITVD G DA+ YA G+DVI+ DHH++ AYA Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E + E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + ++A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRSIE ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L+ P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F + ++I+ + HL+ S+ L A+AF +G Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T E L ++ V G L +N W G K+ QL V D S Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558 >gi|323978816|gb|EGB73897.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TW10509] Length = 577 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +IM+ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERDIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|218550139|ref|YP_002383930.1| ssDNA exonuclease RecJ [Escherichia fergusonii ATCC 35469] gi|218357680|emb|CAQ90321.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia fergusonii ATCC 35469] gi|323966693|gb|EGB62125.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli M863] gi|325498453|gb|EGC96312.1| ssDNA exonuclease RecJ [Escherichia fergusonii ECD227] gi|327251655|gb|EGE63341.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli STEC_7v] Length = 577 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +IM+ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|330995216|ref|ZP_08319129.1| single-stranded-DNA-specific exonuclease RecJ [Paraprevotella xylaniphila YIT 11841] gi|329576358|gb|EGG57872.1| single-stranded-DNA-specific exonuclease RecJ [Paraprevotella xylaniphila YIT 11841] Length = 574 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 165/585 (28%), Positives = 275/585 (47%), Gaps = 22/585 (3%) Query: 15 GFRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 ++W E A + ++ I I+ R+L+ RN++ AK F PS+ L DP Sbjct: 2 NYKWKLEPPTPEKQEAAERLAKELNISPILGRLLIERNITTVADAKKFFRPSLTGLY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + TD D+A R+ +A+ E+IM++GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FMFTDMDRAVERLNKALGRKERIMVYGDYDVDGCTAVALVYKFLQQYYSNIDYYIPDRYE 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ +LII +DCG + D + YA +GID I+ DHH PA Sbjct: 121 EGYGVSVKGIDYAYESEVKLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N R D HL GV F + + + L+ LLDL A++ D Sbjct: 181 AILNAKRFDSTYPYPHLSGCGVGFKFMQAFAQSNGIE-----FSQLIPLLDLCAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLKA+I+ +T ++ + IGP INA GRI Sbjct: 236 IVPIMGENRILAYHGLRQLNANPSIGLKAIIDVCGLSERELTISDIIFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+ D Q +A +++ N R+ ++ +M E+A ++ + D + I Sbjct: 296 QNGKEAVALLVEKDYQTAHEMAEQINRYNDMRKGLDKSMTEEANG-IVEKLDKQSEQKSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WH G++G++A+RL E + RPS ++ + GS RS+ GFD+ K + Sbjct: 355 VIYNEEWHKGVIGIVASRLTEIYYRPSVVLTRTD-NLATGSARSVSGFDVYKAIESC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+ + + T+ + ID ++ + Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFHRRFEAYVETHILPEQTSAILNIDAQIDFKDITRK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L+ P+G N P+F + + +VV H+++ + + + IAF Sbjct: 472 FHHDLKKFNPFGPDNTKPLFCTQHVYDYGTSKVVGREQEHIKLELVDNKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + + N + QL++ D P Sbjct: 532 QS----SQARYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIRPS 571 >gi|239996018|ref|ZP_04716542.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas macleodii ATCC 27126] Length = 573 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 175/563 (31%), Positives = 288/563 (51%), Gaps = 19/563 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ RN++ D L ++ L +L +AA+ + A+ +++I+I Sbjct: 18 DLHPVIDRIYRGRNIAN---LDDLENGLKGLTH-FNVLKGMPQAAQILADAVVQNKRIII 73 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L N + +P+R GYG + ++++ +GA++I+TV Sbjct: 74 VGDFDADGATSTSVCILALRAMGYHNVDFLVPNRFDFGYGLSVPIVDEAAKQGAEVIVTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + D + +A + G+ V+V DHH PA A+VNPN+ +L GV F Sbjct: 134 DNGISCIDGVTHAKSLGMQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKNLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + L+Q +L SLLD+VA+ TV DVV L NR V +GL R Sbjct: 194 YIMLALKAELQQQGHFERAGVAPPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIR 253 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + +T+ +LG+++GP +NA GR+ + + G L+ D++ + Sbjct: 254 AGKCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLLEDETIQAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAAR 389 M+A +LD LN+ RR +E+ M QAE + D S +VV + +H G++G++A R Sbjct: 314 MIAAELDALNKERREIETGMKAQAETVLEQMALDEGDMPSALVVYREDFHQGVIGIVAGR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 LKEK+ +P A + ++D GS RSI G I ++ G++ K GGHAMAAGL+ Sbjct: 374 LKEKYLKPVIAFAHQDDEIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F A + L DG L++ + + +L AGP+G G Sbjct: 434 LPVAKLQDFEQAFVDIARAHMAKLDGNHALLSDGDLSSKELCLPFAHLLRQAGPFGQGFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 +P+F L R+V HL+M +S + + AIAF V + KR+H+ Sbjct: 494 SPLFDGE-FALLDQRLVGQKHLKMVLKSDGANEVDAIAFNVDLKSWP----NAMVKRVHI 548 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L +N +RG + QL V Sbjct: 549 AYRLDINVFRGQETVQLIVEQIE 571 >gi|301169955|emb|CBW29559.1| ssDNA exonuclease, 5'--> 3'-specific [Haemophilus influenzae 10810] Length = 575 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 285/565 (50%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L ++A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCGFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMPKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +ES M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDELNQTRKEIESGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ I++K GGHAMAAGL++ + Sbjct: 375 YHRPVIAFTQDGEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIRKE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFDDFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574 >gi|145639265|ref|ZP_01794871.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittII] gi|145271568|gb|EDK11479.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittII] Length = 575 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E + +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMALEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL TV DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDELNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ I++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 YFADFQYLFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574 >gi|330969009|gb|EGH69075.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. aceris str. M302273PT] Length = 571 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 178/557 (31%), Positives = 281/557 (50%), Gaps = 20/557 (3%) Query: 45 RVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 R+ R V+ + L+ S+ L+P L D A +V A+ ++++I GD+D D Sbjct: 24 RLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLIVGDFDAD 79 Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 GA + + + L + + +P+R GYG P ++E + QL+ITVD G +S Sbjct: 80 GATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITVDNGISSV 139 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 + + A G+ V+V DHH E A A+VNPN+ L GV+F VL+ + Sbjct: 140 EGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIFYVLMALR 199 Query: 224 RILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPG 278 LR+ +L LLDLVAL +V DVVPL NR V +GLM R + PG Sbjct: 200 ARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAGRARPG 259 Query: 279 LKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 L+A++E IT+ +LG+++GP +NA GR+ + +LG L+ DD +A++LD Sbjct: 260 LRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAREMAVQLD 319 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+RLKE++ RP Sbjct: 320 ELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKERYHRP 378 Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVERVNFGR 455 + A + +G GS RS+ GF I + A ++ K GGHAMAAGL++ NF Sbjct: 379 TIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSLPEENFPA 438 Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 F + + T DG L ++ L L +AGP+G P P+F Sbjct: 439 FAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHFPEPLFHG-V 497 Query: 516 HKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 +L RVV HL+M +++ S L IAF V + + + + L +N Sbjct: 498 FQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWVELAYKLDLN 553 Query: 575 YWRGSKRCQLRVLDASP 591 +RG++ QL V+ +P Sbjct: 554 EFRGNETVQLMVVHIAP 570 >gi|319899958|ref|YP_004159686.1| exonuclease RecJ [Bacteroides helcogenes P 36-108] gi|319414989|gb|ADV42100.1| exonuclease RecJ [Bacteroides helcogenes P 36-108] Length = 571 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 272/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W E + + Q+ I ++ R+LV R + + A+ F P + L DP + Sbjct: 4 KWNYQPITSEQTEASQQLAQELGISPVLGRLLVERGIHTATDARKFFRPQLPDLY-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+++GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNRAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSIKGVDYAAESGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPASAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDL A++ D+V Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLCAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + G+KA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGMKAIIDVCGLAEKDITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A +++ + + + IV+ Sbjct: 298 GKEAVDLLTEKDFSTALEKAGQINQYNETRKDLDKSMTEEA-NQIVADLEGLSERRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F+ F + T+ V I+ ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTQRFEDFVAKHILPEQTSAVININAEIDFRDITPKFC 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF N + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNVKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570 >gi|293569806|ref|ZP_06680893.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1071] gi|291587554|gb|EFF19431.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1071] Length = 765 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 177/581 (30%), Positives = 277/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I EG QLIITVD G DA+ YA G+DVI+ DHH++ AYA Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPVEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E + E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + ++A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRSIE ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L+ P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F + ++I+ + HL+ S+ L A+AF +G Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T E L ++ V G L +N W G K+ QL V D S Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558 >gi|283788450|ref|YP_003368315.1| single-stranded DNA-specific exonuclease [Citrobacter rodentium ICC168] gi|282951904|emb|CBG91622.1| single-stranded DNA-specific exonuclease [Citrobacter rodentium ICC168] Length = 577 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 181/566 (31%), Positives = 286/566 (50%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V A+D L S++ ++P L+ DKA + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRS--ARD-LERSVKGMLP-WQQLSGVDKAVDILYNAFREGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + N +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLGMRALGCNNVGYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + +A+ GI V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVDHASALGIPVVVTDHHLPGDTLPAAQAIINPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTYLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEVSNRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSRDALPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + + DG L+A+ + + + +L AGP+G P Sbjct: 437 LEEAKFDLFQQRFGELVTDWLDPSLLQGEIISDGPLSAAEMTMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V T + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTTCWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + + P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|327481450|gb|AEA84760.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas stutzeri DSM 4166] Length = 571 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 176/563 (31%), Positives = 280/563 (49%), Gaps = 20/563 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V+ L+ + L+P L D A +V+A+ ++I+ Sbjct: 18 LPPLLQRLYAARGVTCAEE---LDKGLARLIPY-KQLKCIDAAVELLVEALEKRQRILFV 73 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA + ++ + L + + +P+R GYG P ++ + L++TVD Sbjct: 74 GDFDADGATASSVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPDLLVTVD 133 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S D + A G+ V+V DHH E A A+VNPN+ + + GV+F Sbjct: 134 NGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPECAFPSKCIAGVGVIFY 193 Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 VL+ + LR+ + +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 194 VLLALRARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIRA 253 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PGL+A++E IT+ +LG+++GP +NA GR+ + +LG L+ +D Sbjct: 254 GRARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEALARD 313 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LN++R+ +E M +A A++ + + + WH G++G+LA+RLK Sbjct: 314 MATQLDELNKDRKAIEQGMQREALAQLKDLPLE-DLPFGLCLFEPDWHQGVIGILASRLK 372 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449 E++ RP+ A + DG GS RS+ GF I + A G++ K GGHAMAAGL++ Sbjct: 373 ERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSLP 432 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + NFG F + T DG L+ ++ L L +AGP+G P P Sbjct: 433 QANFGAFAAAFDAEVRRQLCEDDLTGRLLTDGQLSVEEFHLELARALRNAGPWGQHFPEP 492 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F +L R+V HL++ +S+ TL IAF V E + + Sbjct: 493 MFHG-VFQLMQQRIVGERHLKLVLKSECGSLTLDGIAFNVDR----EIWPNPTVRWAELA 547 Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG + QL V +P Sbjct: 548 YKLDVNEYRGQESVQLMVAHIAP 570 >gi|119356522|ref|YP_911166.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium phaeobacteroides DSM 266] gi|119353871|gb|ABL64742.1| exonuclease RecJ [Chlorobium phaeobacteroides DSM 266] Length = 574 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 173/587 (29%), Positives = 272/587 (46%), Gaps = 19/587 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +RW L+ E ++ + ++R L NR + + D AKDF PSI L P P + Sbjct: 4 YRWKLLMPDE--QMVSHLSGAINVSTPLSRALCNRGIATFDEAKDFFRPSIHQL-PSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +A R+ A+ EKIM++GDYDVDG AL+ FL + YI DR +G Sbjct: 61 FKDMLRAVDRVADALEKREKIMLYGDYDVDGTTGTALLYLFLQERGAEVSYYINDRFTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +E + LIITVDCG + + + + GIDVI+ DHH+ E PAYA+ Sbjct: 121 YGLSREGIETAVARNTGLIITVDCGIRAEEQILLCNDHGIDVIICDHHE-PHELPPAYAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP D LC GV F + I L DLVA+AT D+V Sbjct: 180 LNPKLGDCSYPFRELCGCGVAFRFIQAIAEQLD-----TGMESWQKYFDLVAIATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L NR YV +GL R L ++ +N+ ++ + + I P INA GR+ Sbjct: 235 VLEKENRTYVREGLQRIRTSPRSSLAQMLGIMNVDADMMSMFTIAFGIAPRINAAGRMES 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + L+SD ++ + A +L+ LN RR +++ + QAE + S IV+ Sbjct: 295 ATLAVKWLLSDSVEDSQQHAGELEQLNALRRKIDAEIFIQAEKMIAGHFASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+++ EK+ P+ + G GS RS++G +I +++ E Sbjct: 353 YDEEWHLGVLGIVASKMLEKYYLPTVIMGNMN-GLVKGSVRSVDGLNIYEVLQECGEY-- 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG+T+ N F + ++ P + ID VL V + Sbjct: 410 LEQFGGHNQAAGITLRPENLAGFRKRFDEICRDLQPVELRQKEVLIDSVLALEDVTDKFM 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++L PYG GN P+F LQ R++ H++ + + I F Sbjct: 470 NVLAEFAPYGYGNREPLFVSDQVLLQGRPRLLKERHVKFSVRDKHDRIFDVIGF--DRRD 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK 599 + E L S + + L W + Q+R+ D S + + + Sbjct: 528 IYEDLAASNTPVVAMVYSLEKRSWNNREHWQIRLKDLSITQDQPWKE 574 >gi|331684518|ref|ZP_08385110.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H299] gi|331078133|gb|EGI49339.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H299] Length = 577 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYRLDINEFRGNRSLQIIIDNIWPI 577 >gi|121533606|ref|ZP_01665433.1| single-stranded-DNA-specific exonuclease RecJ [Thermosinus carboxydivorans Nor1] gi|121307597|gb|EAX48512.1| single-stranded-DNA-specific exonuclease RecJ [Thermosinus carboxydivorans Nor1] Length = 570 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 178/576 (30%), Positives = 279/576 (48%), Gaps = 21/576 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + + I + I +VA++L+NR + S++ A FLN + L DP L Sbjct: 7 IWRVAAADRALQAEIAGQLGITPLVAQILINRGINSVEAADAFLNAGVERLH-DPFALKG 65 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 A RI QA+++ EKI+I+GDYDVDG + AL+ R LS Y+PDR +GYG Sbjct: 66 MAAAIERIRQALHSKEKIVIYGDYDVDGITASALLYRVLSQLGAAVAYYVPDRFSEGYGL 125 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + ++ GA LIITVDCG T+ + + D+I+ DHH+ + A A++NP Sbjct: 126 NITALQNLCRAGADLIITVDCGITAVNEVAAIRG-EADIIITDHHEPGAAVPAALAVINP 184 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + D + L GV F + +++ + +L LDLVA+ TV D+VPL+ Sbjct: 185 KQPDCPYPEKALAGVGVAFKLCQALWQDAGR-----PVDELYKYLDLVAVGTVADLVPLV 239 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNL 316 G NR V +GL N GL+AL+ + + + + P +NA GR+ + Sbjct: 240 GENRIIVREGLNRLPATENAGLRALVAVCGFTDGRMDTGRIAFGLAPRLNAAGRVSHALS 299 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 +LI+DD+ +A +LD N RR +E A+ Q E + D++ V+VV + Sbjct: 300 AVEMLITDDALFAGEVAKELDAANAERRRIEDAIRVQVEEMLA--GTDLEANKVLVVAAE 357 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++G++A+R+ EKF RP+ IS E+G G GS RSI GF+I + +L++ Sbjct: 358 DWHHGVIGIVASRIVEKFYRPTLIIS-IENGVGRGSARSIRGFNI--FEALCRSSDLLLR 414 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH+ AAG ++ N L A ++ PV +ID + + + L+ L Sbjct: 415 FGGHSAAAGFSILPENVDELRRRLNALAAEVLTPDDFRPVIQIDVPVMLRDITLPLLAEL 474 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 PYG GNP PV A N ++ R + +HL++ + + + + Sbjct: 475 NRLAPYGFGNPAPVLACKNIQVLEARRIGADGSHLKLRVCHEGCPG-EVVMWNRGDL--- 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + +T VN W+G QLR D Sbjct: 531 -ADKIPVNSLVAMTFFPEVNEWQGRLSIQLRASDIK 565 >gi|261820183|ref|YP_003258289.1| ssDNA exonuclease RecJ [Pectobacterium wasabiae WPP163] gi|261604196|gb|ACX86682.1| single-stranded-DNA-specific exonuclease RecJ [Pectobacterium wasabiae WPP163] Length = 584 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 184/573 (32%), Positives = 277/573 (48%), Gaps = 29/573 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V L S+ L+ + +L+ DKA + A+ I+I Sbjct: 20 VPPLLRRLYAQRGVKGAQE---LERSLSGLL-NYRLLSGIDKAIDLLQLALAEKRCIVIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S L + L N +P+R DGYG +P+++ + GA+LI+TVD Sbjct: 76 GDFDADGATSTTLAVLALRSMGGANVKYLVPNRFEDGYGLSPAVVAQAAALGAELIVTVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A++NPN D L GV F Sbjct: 136 NGISSHAGVEDAHRRGISVLVTDHHLPGETLPDADAMINPNLPDCAFPSKALAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 +++ ++ LR + +L LLDLVAL TV DVVPL NR V +GL Sbjct: 196 LMMALFVRLRDSDWFTQPLFTKQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 255 Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R PG++AL+E N S + A +LG+ IGP +NA GR+ + +G LL+S+D Sbjct: 256 NRIRAGECRPGIRALLEVANRDASQLVASDLGFAIGPRLNAAGRLDDMTVGVELLLSNDI 315 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385 + MLA LD LNQ+RR +E M +A + + + + + WH G+VG+ Sbjct: 316 TQARMLANDLDGLNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGI 375 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443 LA+R+KE+F RP A + DG GSGRSI G + + G++ K GGHAMA Sbjct: 376 LASRIKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLYPGMMDKFGGHAMA 435 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502 AGL++ F F + + V DG L +N ++ +ML AGP+ Sbjct: 436 AGLSLHETQFEDFRQRFGELVSEWLDPSQLEGVVWSDGELALPELNLLSTAEMLRYAGPW 495 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558 G P P F ++ R++ HL+ FE + L IAF + T + Sbjct: 496 GQAFPEPTFDGR-FRILQPRLLKERHLKAMFEPIGATGTVPLLDGIAFNIDTTIWPD--- 551 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K + + L +N +RG + QL + P Sbjct: 552 -PSIKEVEMVYRLDINEFRGKRSVQLLIQHLWP 583 >gi|284105198|ref|ZP_06386191.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Poribacteria sp. WGA-A3] gi|283830149|gb|EFC34410.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Poribacteria sp. WGA-A3] Length = 582 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 189/575 (32%), Positives = 288/575 (50%), Gaps = 18/575 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W ++ R A+ + + A VL R V + AK +L S DP L Sbjct: 24 WRVRSVEQ--ERVAALAGVLGLSPLTATVLCGRGVVEPEQAKAWLASS-GGSTHDPFALP 80 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D ++A R+ AI E+I +GDYDVDG A+ +L + F A +YIPDR +GYG Sbjct: 81 DMERAVDRLHLAIQRCERICFYGDYDVDGMAATSLHLLFWRSVGAQAEVYIPDRQEEGYG 140 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + S + K + G L++T DCG+TSY ++ A + G+DVIV DHHQ++S A +N Sbjct: 141 LHESAIRKLGHGGVSLLLTADCGTTSYREIEVARSLGMDVIVTDHHQLQSRMPEPVAFIN 200 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R D + LC+ G+ + V+ R + + S DLVAL+++ D+VPL Sbjct: 201 PYRPDSVYPFQGLCSGGLAYKVVEAYARKYGAADV-----PVESFRDLVALSSIADMVPL 255 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 NR V GL + G++AL + + ++ +A +G+ + P +NA GR+ + L Sbjct: 256 RDENRVLVRDGLAQVAQGNRCGIRALTQDLGLNGTCSAGTIGFRVAPRLNAAGRLAHAGL 315 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G RLL +D LA +L+ LN+ RR +E AM +A A+V + Q IVV + Sbjct: 316 GVRLLTADSEPVALQLAQQLEELNRRRREIEEAMTREAIAQV----EAGDQPHAIVVGAE 371 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G+VG++AARL E++ RP+ ++F+ DG G GS RS+ GFD+ + + LV Sbjct: 372 GWHSGVVGIVAARLVERYHRPAAVVAFDRDGLGKGSVRSVAGFDVCQALRQCQR--DLVA 429 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH MAAGLTV R + F + + + P +D + + V + L Sbjct: 430 FGGHPMAAGLTVRREAYADFSRRFGEGVEGAMDDSLKVPTLDVDAAVALADVQFPFVREL 489 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 E P+G GNP P + +VV HL++ S L++I FR+ G Sbjct: 490 ERLQPFGMGNPEPTLMSRGVSVLEKKVVGDNHLKLVVRQPGSVPLESIGFRMGGLAHA-- 547 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + R+ +N W+GS R QLR+ D Sbjct: 548 -IDAGHGRIDAVFTPELNEWKGSTRIQLRLRDVRV 581 >gi|163750317|ref|ZP_02157558.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella benthica KT99] gi|161329989|gb|EDQ00974.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella benthica KT99] Length = 574 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 285/565 (50%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ +R + + + ++ L+ P + D A++ I I ++ I+I Sbjct: 19 SFSPLLKQIYASRGTTAEEC----DLTLSRLLR-PNTMKGLDIASKIIADGIRDNRAILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S + M L + IP+R GYG +P ++ ++GA+L+ITV Sbjct: 74 MGDFDADGATSTCVCMLALKMMGASKIDYLIPNRFDFGYGLSPEIVAVAHSKGAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH A A+VNPN++D + GV F Sbjct: 134 DNGISSVEGVAAAKALGMQVVITDHHLPGKAIPDADAIVNPNQVDCGFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ N +L LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMSALRAELRQRNWYQEQGIIEPNLAHLLDIVALGTVADVVALDANNRILVAAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 254 AGRCRVGITALLEVAKRNPAKIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMITAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LN RR +E+ M ++A + + + ++ I + + WH G++G+LA+R Sbjct: 314 RMAAELDDLNAQRRDLEADMQQEALKSLESVELNEASLPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +K+++ RP A + +G+ GS RSI+G + ++ + G+++K GGHAMAAGL+ Sbjct: 374 IKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F F + ++ T F DG L A+ +N+ + L +AGP+G P Sbjct: 434 LRAKDFETFELAFDQAVRELLKLEQLTGEFVTDGDLPAADMNLTVASELRNAGPWGQEFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + K+ R+V HL++ E++ +T L AIAF + + ++ Sbjct: 494 EPLFDG-HFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKIWPDATIEHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 V L VN +RG++ QL V P Sbjct: 549 VVYKLDVNEFRGNQTVQLMVEQIEP 573 >gi|332344788|gb|AEE58122.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli UMNK88] Length = 577 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|256019310|ref|ZP_05433175.1| ssDNA exonuclease RecJ [Shigella sp. D9] gi|332280424|ref|ZP_08392837.1| ssDNA exonuclease [Shigella sp. D9] gi|332102776|gb|EGJ06122.1| ssDNA exonuclease [Shigella sp. D9] Length = 577 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTFYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|82545485|ref|YP_409432.1| ssDNA exonuclease RecJ [Shigella boydii Sb227] gi|81246896|gb|ABB67604.1| ssDNA exonuclease [Shigella boydii Sb227] gi|320184564|gb|EFW59365.1| Single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri CDC 796-83] gi|323183446|gb|EFZ68843.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 1357] gi|332090939|gb|EGI96030.1| single-stranded-DNA-specific exonuclease RecJ [Shigella boydii 3594-74] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|317475628|ref|ZP_07934889.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides eggerthii 1_2_48FAA] gi|316908198|gb|EFV29891.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides eggerthii 1_2_48FAA] Length = 571 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 165/582 (28%), Positives = 272/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 +W L E + + Q+ I I+ +LV R ++ A K F P + L DP + Sbjct: 4 KWNYLPITSEQTEASQRLAQELGISPILGELLVERGITTAAAAKKFFRPQLPDLY-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+++GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSTKGVDYATETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLAEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFSLALEKAGQINQYNETRKDLDKTMTEEA-NQIVAGLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F++F + T+ V I+ ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTQRFEEFVSRHILPEQTSAVIDINAEIDFRDITPKFC 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF N + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570 >gi|293553447|ref|ZP_06674075.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1039] gi|291602324|gb|EFF32548.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1039] Length = 765 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 177/581 (30%), Positives = 277/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I EG QLIITVD G DA+ YA G+DVI+ DHH++ AYA Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGRYPFPDLAGVGVAFKVASALLEE-----------PPVEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E + E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + ++A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRSIE ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L+ P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F + ++I+ + HL+ S+ L A+AF +G Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGAYQQHLKFVLSDASSQ-LDAVAFG-FG 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T E L ++ V G L +N W G K+ QL V D S Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558 >gi|300775073|ref|ZP_07084936.1| single-stranded-DNA-specific exonuclease RecJ [Chryseobacterium gleum ATCC 35910] gi|300506888|gb|EFK38023.1| single-stranded-DNA-specific exonuclease RecJ [Chryseobacterium gleum ATCC 35910] Length = 602 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 158/582 (27%), Positives = 267/582 (45%), Gaps = 24/582 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W+ + ++ +++LV R + A++F P++ + +P + Sbjct: 35 QKWIYKP-EPDEEVVDRLSSSLGFGTFESKILVLRGIDNYQKAREFFKPNLNDIH-NPFL 92 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132 + D KA RI AI N EKI+++GDYDVDG +VALM +LS + YIPDR Sbjct: 93 MADMQKAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKKYLDYYIPDRNS 152 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ G LII +DCG + D + YA+N GID I+ DHH E A Sbjct: 153 EGYGISTEGIDFAKENGFSLIIALDCGIKALDMINYASNLGIDFIICDHHLPGEEIPNAA 212 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D L GV F + + I + +L L DL+A++ D Sbjct: 213 AVLDPKRSDCRYPFKELSGCGVGFKLCQGLNTIYKL-----PEAELFELTDLLAISIAAD 267 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V + G NR GL R+ N GL+ LI +S N+ + I P INA GRI Sbjct: 268 IVSMTGENRVLAKMGLKTLRKTRNLGLRLLIPEDKLS-HFEISNIVFEIAPKINAAGRIS 326 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 L++SD+ + + + LN RR ++ A +++ + + Sbjct: 327 HGKAAVELMVSDNLKHANQIVNDIMNLNDERRELDMNSTLSALNQIIE--SQQETKHTTI 384 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V W+ G++G++A+RL E + +P+ + +G+ + S RS+ FD+ + + E Sbjct: 385 VYHPEWNKGVIGIVASRLIETYYKPTLVFTDGNNGEMVASARSVSDFDVHEALDMCSEY- 443 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +K GGH AAGL++E+ F + F++ + P ID + +N Sbjct: 444 -FLKFGGHHAAAGLSMEKDKFDAFKEKFERIVSEKIQEHQKEPSITIDTEIKIDEINREF 502 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNL--AHLQMTFESQD-SETLQAIAFRV 548 I+ P+G N P+F N KL ++ + HL+ + + ++ + F Sbjct: 503 INFHRKLAPFGPHNMKPIFTLTNQKLSGYVKTMGKDNNHLKFYIKQESTGRNIECVGF-- 560 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG+F+ + K + L N+W+G+ L + D Sbjct: 561 ---KLGQFVEDFKNKNFDLAFTLEENHWKGNVTHYLNIKDVK 599 >gi|309703252|emb|CBJ02587.1| single-stranded DNA-specific exonuclease [Escherichia coli ETEC H10407] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + +DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPADDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|88706911|ref|ZP_01104610.1| single-stranded-DNA-specific exonuclease RecJ [Congregibacter litoralis KT71] gi|88698833|gb|EAQ95953.1| single-stranded-DNA-specific exonuclease RecJ [Congregibacter litoralis KT71] Length = 576 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 184/563 (32%), Positives = 280/563 (49%), Gaps = 21/563 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P I+ARV R V L+ ++ L P P +LT A R+ +A+ E+I+I Sbjct: 22 LPPILARVFAARGV---QDAGELDLALSALHP-PSLLTGLPAATERLHEALDRDERILIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL ++ L + + +P+R GYG P ++ LIITVD Sbjct: 78 GDFDADGATSTALAIKALRQFGASHVDYLVPNRFEFGYGLTPGIVALGAQRQPDLIITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S D + A GI+V++ DHH E A A+VNPN+ L GV+F Sbjct: 138 NGISSVDGVDAANALGIEVLITDHHLPGKELPRATAIVNPNQTGCAFPSKALAGVGVMFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +L+ + LR + L + LDLVAL TV DVVPL NR V GL R Sbjct: 198 LLLALRSRLRDEGWFARRGLETPHLGAFLDLVALGTVADVVPLDHNNRILVEGGLARMRS 257 Query: 274 -QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G+ AL+ + +LG+ GP +NA GR+ + +LG L++DD QE Sbjct: 258 GRARAGINALLSVAGRDPLLVVASDLGFAAGPRLNAAGRLDDMSLGIECLLADDPQEARR 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390 +A++LD +N+ R+ +E M E+A A + + + +V+ WH G+VG+LA+R+ Sbjct: 318 IALQLDGMNRERQRIERGMEEEALAALAALRLEDADLPAALVLHDPHWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 K++F RP A + +G+ GSGR I G + ++ G++ + GGHAMAAGL++ Sbjct: 378 KDRFHRPVIAFAHSGEGELKGSGRGIPGMHLRDLLDEVATGHPGLIDRFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 +F + F L PV DG L ++ +ML AGP+G P Sbjct: 438 PEAHFDDFAEAFTAAVEKA-GGLNLEPVLDSDGELTPEDFDLTTAEMLRQAGPWGQMFPE 496 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L+S R+V HL+M+ + D +L AIAF + + K + + Sbjct: 497 PLFDG-VFELRSQRIVGERHLKMSLAKPGDGASLDAIAFGIDVERWPD----PSVKEVRL 551 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L VN++RG +R QL V Sbjct: 552 AYRLDVNHFRGERRLQLLVEQIE 574 >gi|188494077|ref|ZP_03001347.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 53638] gi|193070560|ref|ZP_03051499.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E110019] gi|253772267|ref|YP_003035098.1| ssDNA exonuclease RecJ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162804|ref|YP_003045912.1| ssDNA exonuclease RecJ [Escherichia coli B str. REL606] gi|300906558|ref|ZP_07124249.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 84-1] gi|300925127|ref|ZP_07141041.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 182-1] gi|301303050|ref|ZP_07209177.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 124-1] gi|312972866|ref|ZP_07787039.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 1827-70] gi|188489276|gb|EDU64379.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 53638] gi|192956143|gb|EDV86607.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E110019] gi|242378423|emb|CAQ33204.1| recJ [Escherichia coli BL21(DE3)] gi|253323311|gb|ACT27913.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974705|gb|ACT40376.1| ssDNA exonuclease, 5' -> 3'-specific [Escherichia coli B str. REL606] gi|253978871|gb|ACT44541.1| ssDNA exonuclease, 5' -> 3'-specific [Escherichia coli BL21(DE3)] gi|300401597|gb|EFJ85135.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 84-1] gi|300418729|gb|EFK02040.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 182-1] gi|300841714|gb|EFK69474.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 124-1] gi|310332808|gb|EFQ00022.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 1827-70] gi|315256775|gb|EFU36743.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 85-1] gi|323941587|gb|EGB37767.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E482] gi|323960811|gb|EGB56432.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H489] gi|323971670|gb|EGB66899.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA007] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|323946622|gb|EGB42645.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H120] gi|324119933|gb|EGC13812.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E1167] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|312862866|ref|ZP_07723106.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus vestibularis F0396] gi|311101726|gb|EFQ59929.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus vestibularis F0396] Length = 744 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 172/605 (28%), Positives = 288/605 (47%), Gaps = 34/605 (5%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KD 59 M + + + S + W + + ++H + + A++ R ++ + A +D Sbjct: 1 MTGRKYKNMITST--YDWKINTKEPD-AGFFKLAKEHGLAETAAKIAYERGITTEEALED 57 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FL + L DP +L D DKA RI QAI N E+I+++GDYD DG S +++ L Sbjct: 58 FLKADLSHLH-DPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMM 116 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIV 178 A +Y+P+R DGYGPN S+ + FI + LI+TVD G +A+ YA QG+DVIV Sbjct: 117 GAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIV 176 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238 DHH + ++ AYA+V+P D +L GV F + + + Sbjct: 177 TDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP----------- 225 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENL 297 +LDLVA+ T+ D+V L NR V GL + + GL+ L+ ++ I+ E + Sbjct: 226 TEMLDLVAIGTIADMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETV 285 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+ + P +NA GR+ + N LL D +E + +A++++ N+ R+ + + ++A Sbjct: 286 GFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTM 345 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 V V V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E Sbjct: 346 VDL------DKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLE 398 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 +I + I GGHA AAG+T+ N G+L + ++ ++ Sbjct: 399 SINI--FHALDDHRDIFTAFGGHAGAAGMTLPEENLGQLSEVLCQYVYDNDIDTSAKNTL 456 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES 535 +D L S +++ I LE P+G N PVF + + R + HL+ + Sbjct: 457 HLDEELQLSELSLDTIKSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK- 515 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 Q ++ +AF L + Q++G + + L VN W G QL + DA Sbjct: 516 QGKDSFDVVAFNKGN--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVDGVQ 571 Query: 596 HFAKK 600 F + Sbjct: 572 LFDFR 576 >gi|194431809|ref|ZP_03064100.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae 1012] gi|194420165|gb|EDX36243.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae 1012] gi|332086817|gb|EGI91953.1| single-stranded-DNA-specific exonuclease RecJ [Shigella boydii 5216-82] gi|332087741|gb|EGI92868.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae 155-74] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|91212270|ref|YP_542256.1| ssDNA exonuclease RecJ [Escherichia coli UTI89] gi|110643040|ref|YP_670770.1| ssDNA exonuclease RecJ [Escherichia coli 536] gi|191173245|ref|ZP_03034776.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli F11] gi|218559885|ref|YP_002392798.1| ssDNA exonuclease RecJ [Escherichia coli S88] gi|218706398|ref|YP_002413917.1| ssDNA exonuclease RecJ [Escherichia coli UMN026] gi|237706464|ref|ZP_04536945.1| ssDNA exonuclease RecJ [Escherichia sp. 3_2_53FAA] gi|293406391|ref|ZP_06650317.1| ssDNA exonuclease RecJ [Escherichia coli FVEC1412] gi|298382127|ref|ZP_06991724.1| single-stranded-DNA-specific exonuclease [Escherichia coli FVEC1302] gi|300896212|ref|ZP_07114761.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 198-1] gi|300995676|ref|ZP_07181204.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 200-1] gi|331659022|ref|ZP_08359964.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA206] gi|91073844|gb|ABE08725.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli UTI89] gi|110344632|gb|ABG70869.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 536] gi|190906496|gb|EDV66104.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli F11] gi|218366654|emb|CAR04408.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli S88] gi|218433495|emb|CAR14398.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli UMN026] gi|226899504|gb|EEH85763.1| ssDNA exonuclease RecJ [Escherichia sp. 3_2_53FAA] gi|291426397|gb|EFE99429.1| ssDNA exonuclease RecJ [Escherichia coli FVEC1412] gi|294494140|gb|ADE92896.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli IHE3034] gi|298277267|gb|EFI18783.1| single-stranded-DNA-specific exonuclease [Escherichia coli FVEC1302] gi|300304784|gb|EFJ59304.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 200-1] gi|300359946|gb|EFJ75816.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 198-1] gi|307625535|gb|ADN69839.1| ssDNA exonuclease RecJ [Escherichia coli UM146] gi|315289445|gb|EFU48840.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 110-3] gi|315295680|gb|EFU55000.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 16-3] gi|323951669|gb|EGB47544.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H252] gi|323957387|gb|EGB53109.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H263] gi|324011758|gb|EGB80977.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 60-1] gi|331053604|gb|EGI25633.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA206] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|191165982|ref|ZP_03027818.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B7A] gi|218555440|ref|YP_002388353.1| ssDNA exonuclease RecJ [Escherichia coli IAI1] gi|300815656|ref|ZP_07095880.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 107-1] gi|300820696|ref|ZP_07100847.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 119-7] gi|307310489|ref|ZP_07590137.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli W] gi|331669627|ref|ZP_08370473.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA271] gi|331678879|ref|ZP_08379553.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H591] gi|190903930|gb|EDV63643.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B7A] gi|218362208|emb|CAQ99826.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli IAI1] gi|300526960|gb|EFK48029.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 119-7] gi|300531585|gb|EFK52647.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 107-1] gi|306909384|gb|EFN39879.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli W] gi|315062196|gb|ADT76523.1| ssDNA exonuclease, 5' --3'-specific [Escherichia coli W] gi|320202552|gb|EFW77122.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli EC4100B] gi|323173890|gb|EFZ59519.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli LT-68] gi|323377220|gb|ADX49488.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli KO11] gi|331063295|gb|EGI35208.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA271] gi|331073709|gb|EGI45030.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H591] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|330908924|gb|EGH37438.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli AA86] Length = 560 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 5 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 60 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 61 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 120 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 121 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 180 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 181 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 240 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 241 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 300 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 301 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 360 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 361 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 420 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 421 EEEKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 480 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 481 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 535 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 536 AYKLDINEFRGNRSLQIIIDNIWPI 560 >gi|288799943|ref|ZP_06405402.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral taxon 299 str. F0039] gi|288333191|gb|EFC71670.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella sp. oral taxon 299 str. F0039] Length = 579 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 174/585 (29%), Positives = 287/585 (49%), Gaps = 22/585 (3%) Query: 16 FRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W L E I+ A A+ +K + +I++ +LV R + + AK F +P + L+ +P Sbjct: 3 FKWKYLPPNQEEISEAKALGEKLNLSNILSLLLVRRGIKTESAAKRFFHPQLSELI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D D A R+ A+ E+I+++GDYDVDG SVAL+ +FL N YIPDR + Sbjct: 62 LLKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLRQYYSNIEYYIPDRYEE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ +LII +DCG + + + A + GID I+ DHH E PA A Sbjct: 122 GYGVSQKGIDYAYKNDVKLIIILDCGIKAIEEITLAKSLGIDFIICDHHVPDEEMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F ++ + N L LLD A++ D+ Sbjct: 182 IINPKRPDDTYPFKHLCGCGVGFKLMQAFAK-----NNGISFSRLAPLLDFCAVSIAADL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VP+ G NR GL + + GLKA+I+ ++ ++ + IGP INA GRI Sbjct: 237 VPVEGENRILAYHGLKQLNQNPSIGLKAIIDICGLEEKDVSMSDIIFKIGPRINASGRID 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D + A +D N+ R+ ++ M E+A +++++ ++ +Q S IV Sbjct: 297 NGKQSVDLLVEKDYSKALQQAKHIDEYNEQRKDIDKQMTEEA-NQIVSRIENQKQQSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V + W G+VG++A+RL E + RP+ ++ ++ GS RSI G D+ + Sbjct: 356 VYDENWKKGVVGIVASRLTEIYFRPTIVLT-KDGNLATGSARSIMGVDVYAAIKHC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAGLT+ + + FQ++ N + +ID ++ ++ Sbjct: 413 LLLNFGGHTYAAGLTLHWDDIPKFKQRFQEYIENHILPEQKEATLEIDAQIDFKDISKKF 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G NP P F + +VV H+++ + S + IAF Sbjct: 473 FHDLKRFAPFGPSNPKPRFITKGVFDYGTSKVVGREQEHIKLELVDSKSSHVMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + ++ RG + L N ++ QL++ D P+E Sbjct: 533 SKS--ARYIKSKRG--FDIAYTLEENTFK-RNLVQLQIEDIRPIE 572 >gi|331648638|ref|ZP_08349726.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli M605] gi|281179897|dbj|BAI56227.1| ssDNA exonuclease [Escherichia coli SE15] gi|331042385|gb|EGI14527.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli M605] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEEKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|147550|gb|AAA62789.1| recJ [Escherichia coli] Length = 578 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 23 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 78 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 79 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 138 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 139 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 198 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 199 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 258 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 259 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 318 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 319 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 378 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 379 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 438 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 439 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 498 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 499 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 553 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 554 AYKLDINEFRGNRSLQIIIDNIWPI 578 >gi|15803428|ref|NP_289461.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 EDL933] gi|15833018|ref|NP_311791.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. Sakai] gi|168747629|ref|ZP_02772651.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4113] gi|168753830|ref|ZP_02778837.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4401] gi|168760020|ref|ZP_02785027.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4501] gi|168766885|ref|ZP_02791892.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4486] gi|168775769|ref|ZP_02800776.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4196] gi|168778905|ref|ZP_02803912.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4076] gi|168785738|ref|ZP_02810745.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC869] gi|168800025|ref|ZP_02825032.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC508] gi|195936510|ref|ZP_03081892.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. EC4024] gi|208807274|ref|ZP_03249611.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4206] gi|208813008|ref|ZP_03254337.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4045] gi|208821471|ref|ZP_03261791.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4042] gi|209400065|ref|YP_002272366.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4115] gi|217327834|ref|ZP_03443917.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. TW14588] gi|254794842|ref|YP_003079679.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. TW14359] gi|261226205|ref|ZP_05940486.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli O157:H7 str. FRIK2000] gi|261256540|ref|ZP_05949073.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli O157:H7 str. FRIK966] gi|291284211|ref|YP_003501029.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O55:H7 str. CB9615] gi|12517418|gb|AAG58020.1|AE005519_6 ssDNA exonuclease, 5' --> 3' specific [Escherichia coli O157:H7 str. EDL933] gi|13363236|dbj|BAB37187.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. Sakai] gi|187768787|gb|EDU32631.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4196] gi|188017956|gb|EDU56078.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4113] gi|189003464|gb|EDU72450.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4076] gi|189358543|gb|EDU76962.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4401] gi|189363798|gb|EDU82217.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4486] gi|189369393|gb|EDU87809.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4501] gi|189374150|gb|EDU92566.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC869] gi|189377663|gb|EDU96079.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC508] gi|208727075|gb|EDZ76676.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4206] gi|208734285|gb|EDZ82972.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4045] gi|208741594|gb|EDZ89276.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4042] gi|209161465|gb|ACI38898.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC4115] gi|209760598|gb|ACI78611.1| ssDNA exonuclease RecJ [Escherichia coli] gi|209760600|gb|ACI78612.1| ssDNA exonuclease RecJ [Escherichia coli] gi|209760602|gb|ACI78613.1| ssDNA exonuclease RecJ [Escherichia coli] gi|209760604|gb|ACI78614.1| ssDNA exonuclease RecJ [Escherichia coli] gi|209760606|gb|ACI78615.1| ssDNA exonuclease RecJ [Escherichia coli] gi|217320201|gb|EEC28626.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. TW14588] gi|254594242|gb|ACT73603.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli O157:H7 str. TW14359] gi|290764084|gb|ADD58045.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O55:H7 str. CB9615] gi|320189236|gb|EFW63895.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. EC1212] gi|320640535|gb|EFX10074.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. G5101] gi|320645782|gb|EFX14767.1| ssDNA exonuclease RecJ [Escherichia coli O157:H- str. 493-89] gi|320651082|gb|EFX19522.1| ssDNA exonuclease RecJ [Escherichia coli O157:H- str. H 2687] gi|320656578|gb|EFX24474.1| ssDNA exonuclease RecJ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662098|gb|EFX29499.1| ssDNA exonuclease RecJ [Escherichia coli O55:H7 str. USDA 5905] gi|320667173|gb|EFX34136.1| ssDNA exonuclease RecJ [Escherichia coli O157:H7 str. LSU-61] gi|326339024|gb|EGD62839.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. 1044] gi|326343094|gb|EGD66862.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli O157:H7 str. 1125] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|16130794|ref|NP_417368.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12 substr. MG1655] gi|89109671|ref|AP_003451.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12 substr. W3110] gi|170082453|ref|YP_001731773.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12 substr. DH10B] gi|194436725|ref|ZP_03068825.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 101-1] gi|238902017|ref|YP_002927813.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli BW2952] gi|256024598|ref|ZP_05438463.1| ssDNA exonuclease RecJ [Escherichia sp. 4_1_40B] gi|300954268|ref|ZP_07166731.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 175-1] gi|301643758|ref|ZP_07243796.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 146-1] gi|307139579|ref|ZP_07498935.1| ssDNA exonuclease RecJ [Escherichia coli H736] gi|331643582|ref|ZP_08344713.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H736] gi|2507106|sp|P21893|RECJ_ECOLI RecName: Full=Single-stranded-DNA-specific exonuclease recJ gi|887842|gb|AAA83073.1| single-stranded DNA-specific exonuclease [Escherichia coli] gi|1789259|gb|AAC75930.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12 substr. MG1655] gi|85675704|dbj|BAE76957.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K12 substr. W3110] gi|169890288|gb|ACB03995.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli str. K-12 substr. DH10B] gi|194424207|gb|EDX40194.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 101-1] gi|238863575|gb|ACR65573.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli BW2952] gi|260448062|gb|ACX38484.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli DH1] gi|300318729|gb|EFJ68513.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 175-1] gi|301077857|gb|EFK92663.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 146-1] gi|315137491|dbj|BAJ44650.1| ssDNA exonuclease RecJ [Escherichia coli DH1] gi|315614952|gb|EFU95590.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 3431] gi|331037053|gb|EGI09277.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli H736] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|311745444|ref|ZP_07719229.1| single-stranded-DNA-specific exonuclease RecJ [Algoriphagus sp. PR1] gi|126577995|gb|EAZ82215.1| single-stranded-DNA-specific exonuclease RecJ [Algoriphagus sp. PR1] Length = 574 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 170/582 (29%), Positives = 275/582 (47%), Gaps = 19/582 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 + W G + ++ + I+A +L+NR V D AK++ PS+ L DP + Sbjct: 3 YVWKQKPRATGT-LVEQLGREINVNPILANMLINRGVDNFDTAKNYFRPSLSKLH-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +A RI +AI EKI+++GDYDVDG +VAL+ +L + YIPDR +G Sbjct: 61 MKDMTEAIERIEKAIQQDEKILVYGDYDVDGTTAVALVYSYLQSFYSKVDFYIPDRYKEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + +LII +DCG + + + A G+D I+ DHH E A A+ Sbjct: 121 YGISSKGVRFAAENNYKLIIALDCGIKAIEKVALAKELGVDFIICDHHTPGDELPQAVAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ R D L AGV F ++ +I + L + LDL+ ++ D+V Sbjct: 181 LDAKRKDCEYPYKELSGAGVGFKLIQAHAKIREIEESA-----LYAYLDLLVVSIAADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P+ G NR GL PGLKAL+ I I ++ + IGP INA GR+ + Sbjct: 236 PITGENRILAYYGLERINNTPRPGLKALMLSAKIEKEIGISDIVFKIGPRINASGRLEHA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LLIS D A +D +N RR + + ++A + + + S V+ Sbjct: 296 KASVELLISTDLDLAIERAKVVDEVNTTRRNFDENITKEAFEMIAEREASNEWNST-VLF 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+R EK+ RP+ ++ E +GK GS RS+ F+I + +S G+L Sbjct: 355 KEDWHKGVIGIVASRCIEKYYRPTIILT-ESNGKATGSARSVVDFNIYEAISEC--AGLL 411 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAGLT+ F+K + + + PV +ID L +N + Sbjct: 412 DQFGGHKYAAGLTLSVDKVEDFQIMFEKVVKSRIEEVHRKPVIEIDDELLLDQINYKFYN 471 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ--AIAFRVYGT- 551 +L+ P+G GN PVF +++ ++ HL+ QD + + + F + Sbjct: 472 ILKQMAPFGPGNTEPVFRISQAYAENVIILKDKHLRFNIV-QDGQVTKPVCLGFGLADKT 530 Query: 552 --PLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590 P + +GK R + + N++R QL V D Sbjct: 531 KDPDHTIVKMLQGKMRFDIVAEMRENFFRDKSSLQLYVKDIK 572 >gi|157155215|ref|YP_001464229.1| ssDNA exonuclease RecJ [Escherichia coli E24377A] gi|209920346|ref|YP_002294430.1| ssDNA exonuclease RecJ [Escherichia coli SE11] gi|218696487|ref|YP_002404154.1| ssDNA exonuclease RecJ [Escherichia coli 55989] gi|260857015|ref|YP_003230906.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli O26:H11 str. 11368] gi|260869569|ref|YP_003235971.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli O111:H- str. 11128] gi|309793964|ref|ZP_07688389.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 145-7] gi|157077245|gb|ABV16953.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E24377A] gi|209913605|dbj|BAG78679.1| ssDNA exonuclease [Escherichia coli SE11] gi|218353219|emb|CAU99136.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli 55989] gi|257755664|dbj|BAI27166.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli O26:H11 str. 11368] gi|257765925|dbj|BAI37420.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli O111:H- str. 11128] gi|308122371|gb|EFO59633.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 145-7] gi|323154773|gb|EFZ40971.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli EPECa14] gi|323180336|gb|EFZ65888.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 1180] gi|324017289|gb|EGB86508.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 117-3] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|282881731|ref|ZP_06290394.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella timonensis CRIS 5C-B1] gi|281304490|gb|EFA96587.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella timonensis CRIS 5C-B1] Length = 578 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 174/590 (29%), Positives = 285/590 (48%), Gaps = 22/590 (3%) Query: 16 FRWVS-LLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W E A + K I I+A +L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYVPPTSEETKAAKELGDKLNINTILALLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG SVAL+ +FL N + YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLQQFYSNIDYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + +E G +LII +DCG + D + YA + GID I+ DHH PA A Sbjct: 122 GYGVSKKSLEYARETGVKLIIILDCGIKATDEIAYAKSLGIDFIICDHHVPDEVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HL GV F ++ + N L+ LLD A++ D+ Sbjct: 182 ILNPKRPDDTYPFKHLSGCGVGFKLMQAFAK-----NNNIPFSRLIPLLDFCAVSISADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLKA+I+ N + I+ ++ + IGP INA GR+ Sbjct: 237 VPVVDENRILAFHGLKQLNQNPSVGLKAIIDICNLGNRDISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D A +D N+ R+ ++ M E+A ++++ ++ + S IV Sbjct: 297 NGKESVDLLVEKDIASAIRQAKHIDEYNEQRKDIDKQMTEEA-NLIVSKLENQKHHSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLTRDGE-FATGSARSVTGFDVYAAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +LV GGH AAGLT+ + FQK+ + T P+ ID +++ + L Sbjct: 413 LLVNFGGHTYAAGLTLRWDDIKTFRTRFQKYVDEHILPEQTEPIIDIDAIIDFKDITKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 L+ P+G GNP P+F+ + +VV H+++ + S + IAF Sbjct: 473 HQELKKFSPFGPGNPKPMFSTIGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 + + + L N ++ QL++ D P EG + Sbjct: 533 SAS----ARYIKSKRSFDIAYTLEDNVFK-RNAVQLQIEDIRPTEGEDYQ 577 >gi|193063509|ref|ZP_03044598.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E22] gi|194426412|ref|ZP_03058967.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B171] gi|260845560|ref|YP_003223338.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli O103:H2 str. 12009] gi|293449214|ref|ZP_06663635.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B088] gi|192930786|gb|EDV83391.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E22] gi|194415720|gb|EDX31987.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B171] gi|257760707|dbj|BAI32204.1| ssDNA exonuclease RecJ, 5' --> 3'-specific [Escherichia coli O103:H2 str. 12009] gi|291322304|gb|EFE61733.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B088] gi|323162517|gb|EFZ48367.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E128010] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVVHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|170018862|ref|YP_001723816.1| ssDNA exonuclease RecJ [Escherichia coli ATCC 8739] gi|169753790|gb|ACA76489.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli ATCC 8739] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDSIWPI 577 >gi|74313450|ref|YP_311869.1| ssDNA exonuclease RecJ [Shigella sonnei Ss046] gi|73856927|gb|AAZ89634.1| ssDNA exonuclease [Shigella sonnei Ss046] gi|323167902|gb|EFZ53592.1| single-stranded-DNA-specific exonuclease RecJ [Shigella sonnei 53G] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EADKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|301027415|ref|ZP_07190752.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 69-1] gi|300394923|gb|EFJ78461.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 69-1] Length = 577 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHVGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + PV Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPV 577 >gi|323935876|gb|EGB32175.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli E1520] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + +A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVAHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|322516623|ref|ZP_08069537.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus vestibularis ATCC 49124] gi|322124893|gb|EFX96317.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus vestibularis ATCC 49124] Length = 744 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 172/605 (28%), Positives = 288/605 (47%), Gaps = 34/605 (5%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KD 59 M + + + S + W + + ++H + + A++ R ++ + A +D Sbjct: 1 MTGRKYKNMITST--YDWKINTKEPD-AGFFKLAKEHGLAETAAKIAYERGITTEEALED 57 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FL + L DP +L D DKA RI QAI N E+I+++GDYD DG S +++ L Sbjct: 58 FLKADLSHLH-DPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMM 116 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIV 178 A +Y+P+R DGYGPN S+ + FI + LI+TVD G +A+ YA QG+DVIV Sbjct: 117 GAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIV 176 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238 DHH + ++ AYA+V+P D +L GV F + + + Sbjct: 177 TDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP----------- 225 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENL 297 +LDLVA+ T+ D+V L NR V GL + + GL+ L+ ++ I+ E + Sbjct: 226 TEMLDLVAIGTIADMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETV 285 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+ + P +NA GR+ + N LL D +E + +A++++ N+ R+ + + ++A Sbjct: 286 GFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTM 345 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 V V V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E Sbjct: 346 VDL------DKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLE 398 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 +I + I GGHA AAG+T+ N G+L + ++ ++ Sbjct: 399 SINI--FHALDDHRDIFTAFGGHAGAAGMTLPEENLGQLSEILCQYVYDNDIDTSAKNTL 456 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES 535 +D L S +++ I LE P+G N PVF + + R + HL+ + Sbjct: 457 HLDEELQLSELSLDTIKSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK- 515 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 Q ++ +AF L + Q++G + + L VN W G QL + DA Sbjct: 516 QGKDSFDVVAFNKGN--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVDGVQ 571 Query: 596 HFAKK 600 F + Sbjct: 572 LFDFR 576 >gi|331664465|ref|ZP_08365371.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA143] gi|331058396|gb|EGI30377.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA143] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|293416145|ref|ZP_06658785.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B185] gi|291432334|gb|EFF05316.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B185] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|254037936|ref|ZP_04871994.1| ssDNA exonuclease [Escherichia sp. 1_1_43] gi|226839560|gb|EEH71581.1| ssDNA exonuclease [Escherichia sp. 1_1_43] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 178/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +IM+ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+A+ + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|218701601|ref|YP_002409230.1| ssDNA exonuclease RecJ [Escherichia coli IAI39] gi|218371587|emb|CAR19426.1| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli IAI39] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 178/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +IM+ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIMVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+A+ + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|218128557|ref|ZP_03457361.1| hypothetical protein BACEGG_00127 [Bacteroides eggerthii DSM 20697] gi|217989281|gb|EEC55595.1| hypothetical protein BACEGG_00127 [Bacteroides eggerthii DSM 20697] Length = 571 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 165/582 (28%), Positives = 272/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 +W L E + + Q+ I I+ +LV R ++ A K F P + L DP + Sbjct: 4 KWNYLPITSEQTEASQRLAQELGISPILGELLVERGITTAAAAKKFFRPQLPDLY-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+++GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 63 MKDMDVAVERLNKAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA +GID I+ DHH PA A+ Sbjct: 123 YGVSTKGVDYATETGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 183 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 238 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLAEKEITVSDIVFKIGPRINASGRIQN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ M E+A +++ + + IV+ Sbjct: 298 GKEAVDLLTEKDFLLALEKAGQINQYNETRKDLDKTMTEEA-NQIVAGLEGLADRRSIVL 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + + Sbjct: 357 YNEDWHKGVIGIVASRLTEVYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEYC--RDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N F++F + T+ V I+ ++ + Sbjct: 414 LENFGGHTYAAGLSMKVENVPAFTQRFEEFVSRHILPEQTSAVIDINAEIDFRDITPKFC 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 + L+ P+G N PVF N + +VV H+++ + + + IAF Sbjct: 474 NDLKKFNPFGPDNTKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 534 ----SHVRYIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 570 >gi|320175920|gb|EFW50998.1| Single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae CDC 74-1112] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|284008431|emb|CBA74883.1| single-stranded-DNA-specific exonuclease [Arsenophonus nasoniae] Length = 576 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 183/567 (32%), Positives = 285/567 (50%), Gaps = 20/567 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + I+ R+ R V + + L + L+ + L + A + ++ A+ +I++ Sbjct: 19 HLSPILRRLYAMRGVLSE---NELETGAKGLL-NYQSLNGIETAVQLLITALNEHWQIIV 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL +R LS + + +P+R DGYG +P ++++ I AQLIITV Sbjct: 75 VGDFDADGATSTALTLRALSAMGYRHFDYLVPNRFEDGYGLSPQVVDEVIKRKAQLIITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S++ + A GI VI+ DHH A A++NPN D L GV F Sbjct: 135 DNGISSHEGVAVAHRHGIKVIITDHHLPGENLPCAEAIINPNLADCHFPSKALAGVGVSF 194 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 195 YLMSALRAALRQTGWFEQQSRKMPNLAELLDLVALGTVADVVPLDSNNRILVYQGLNRIR 254 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+KALIE S + A +LG+ IGP +NA GR+ + ++G LL++DD Sbjct: 255 AGRSCVGIKALIEVSKRDVSRLVANDLGFSIGPRLNAAGRLDDMSIGVELLLTDDIVHAR 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA +LD LN+ RR +E M ++A + Q + + + WH G+VG+LA+R Sbjct: 315 KLANELDSLNRTRREIEQDMQQEAWHIFSQIEKKRHQIPNGLALYHPEWHQGVVGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + +G GSGRSI G + + G+++K GGHAMAAGLT Sbjct: 375 IKERFHRPVIAFAPAGEGILKGSGRSINGLHLRDALERLDTLNPGLILKFGGHAMAAGLT 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + + F ++ + V DG LN +++ + +++ + GP+G P Sbjct: 435 LEEQKFTQFQENFSNLMAELLDNDMLEGVIWSDGELNNEELSLDIAELIRNGGPWGQAFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E + IAF + + + K + Sbjct: 495 EPIFDGK-FRLLQQRLVGDCHLKVMLEPLAGGPMIDGIAFNIDTAYWPD----NSIKMVQ 549 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPVE 593 + L VN +RG++ QL + P E Sbjct: 550 LAYKLDVNEYRGNRNIQLLIQHLWPCE 576 >gi|218246129|ref|YP_002371500.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8801] gi|257059178|ref|YP_003137066.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8802] gi|218166607|gb|ACK65344.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8801] gi|256589344|gb|ACV00231.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8802] Length = 655 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 167/581 (28%), Positives = 279/581 (48%), Gaps = 22/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW + + + + ++A+V++NR + + +L+P + L Sbjct: 7 QRWEIATPNP--EQVKQLIEATGLSPLIAKVIINRGIDTVKSTQVYLDPEVENLPSPLKE 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D + + +AI EKI I GDYD DG S AL++R S + IP R+ DG Sbjct: 65 FPDLATSITLLQEAITTGEKIAICGDYDADGMTSTALLLRAFSQLGADIYYEIPSRMKDG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++E F ++G +I+TVD G ++Y +Q A G+ VI+ DHH + + PA A+ Sbjct: 125 YGINERIVEAFADQGVGVILTVDNGISAYQPIQRAIELGLTVIITDHHDLPEKLPPADAI 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP L + S L GV +++ V + L + LL+L L T+ D+ Sbjct: 185 LNPKLLPENSPYRGLAGVGVAYILAVTTAQSLGITQGF-----IDPLLELFTLGTIADLA 239 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINAGGRI 311 PLIG+NR ++ +GL + G++AL++ + +++G+ +GP INA GRI Sbjct: 240 PLIGVNRRWLKRGLRRLPKSQLAGVQALMQVAGVSEEQKQLKPDDIGFRLGPRINAIGRI 299 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G+ + LL +DD AM+ + +N R+ M + +A V ++ V+ Sbjct: 300 GDPQMIIELLTTDDPGIALERAMQCEQINAKRKAMCEQIELEAVHLVENTPIPWKKDRVL 359 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV WH G++G++A+RL E++G P F ++EE K GS R I+ F+I + + F Sbjct: 360 VVVQSNWHHGVIGIVASRLVERYGVPVFIGTYEENPSKIRGSARGIKEFNIFEALDFC-- 417 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L K GGH A G ++ N FAH + P+ ID N + Sbjct: 418 GDLLGKYGGHKAAGGFSLLAKNLDHFKQRLSTFAHQYLEPHHLKPLVSIDAEANFDQLTP 477 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVY 549 L ++ P+G GN PVF PN ++ R+V HL++ F + + ++A+A+R Sbjct: 478 LLHQSIDQLQPWGIGNEFPVFWTPNVQVLEQRIVGKNHLKLVFCQDNNENQMKAVAWR-- 535 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 GE+ KR+ + L N W G ++ ++ Sbjct: 536 ---WGEYF--PLPKRVDIAYKLKENNWNGETNIEIEIIGIR 571 >gi|300928172|ref|ZP_07143714.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 187-1] gi|300463812|gb|EFK27305.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 187-1] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFLSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|198276633|ref|ZP_03209164.1| hypothetical protein BACPLE_02829 [Bacteroides plebeius DSM 17135] gi|198270158|gb|EDY94428.1| hypothetical protein BACPLE_02829 [Bacteroides plebeius DSM 17135] Length = 573 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 168/585 (28%), Positives = 276/585 (47%), Gaps = 22/585 (3%) Query: 15 GFRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 ++W + A A++++ I I+ ++L R + S AK F P + L DP Sbjct: 2 NYKWNYQPPTLQEREAARALSREIGISPILCKLLQERGIHSAAEAKRFFRPQLNDLH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N + YIPDR Sbjct: 61 FLMNDMDVAVERLNLAMGRKERILVYGDYDVDGTTAVALVFKFLQQFYSNIDYYIPDRYN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ + G +L+I +DCG + + + YA +GID I+ DHH PA Sbjct: 121 EGYGVSKKGVDYAYSTGVKLVIVLDCGIKAVEEISYAKEKGIDFIICDHHVPDEVLPPAA 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++N R D HL GV F + + N L LLDLVA++ D Sbjct: 181 AILNAKRPDSTYPYEHLSGCGVGFKFMQAFAQ-----NNGIEFHQLTPLLDLVAVSIASD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VP++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 236 IVPIMGENRILAYHGLRQLNANPSIGLKAIIDVCGLAEKEITMSDIVFKIGPRINASGRI 295 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LLI D + +++ N+ R+ ++ M E+A K++ D+ + I Sbjct: 296 QNGKEAVDLLIEKDFASALKKSNRINSYNETRKDLDKNMTEEA-NKIVDNLSDLSERRSI 354 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + WH G++G++A+RL E + RP+ ++ E GS RS+ GFD+ K + Sbjct: 355 VIFNEDWHKGVIGIVASRLTEIYYRPAVVLTRTE-NLATGSARSVSGFDVYKAIEHC--R 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL+++ N F+++ N + T +ID L+ + Sbjct: 412 DLLENFGGHTYAAGLSMKVENVPEFTRRFEEYVTNHILPEQTNATIQIDAQLDFRDITPK 471 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 L+ P+G N PVFA N + +VV H+++ + + + IAF Sbjct: 472 FFFDLKKFNPFGPENHKPVFATLNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFG 531 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + ++ + N + QL++ D P Sbjct: 532 QS----SQVRYIKTKQSFNICYTIEENTHK-RGEIQLQIEDIKPS 571 >gi|331674377|ref|ZP_08375137.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA280] gi|331068471|gb|EGI39866.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli TA280] Length = 577 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHVGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|242240701|ref|YP_002988882.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii Ech703] gi|242132758|gb|ACS87060.1| single-stranded-DNA-specific exonuclease RecJ [Dickeya dadantii Ech703] Length = 580 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 186/568 (32%), Positives = 277/568 (48%), Gaps = 23/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V L+ S+R L+ D LT A + QA+ ++++ Sbjct: 22 LPPLLRRLYALRGVKDPQE---LDRSLRGLL-DYRQLTGIGTAVDLLCQALAERLRVVVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + +P+R DGYG +P ++ + +GA LI+TVD Sbjct: 78 GDFDADGATSTALTVLALRAMGCDQVQYLVPNRFEDGYGLSPEVVVQAAAKGADLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ + A +GI V+V DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVDDAHQRGIRVLVTDHHLPGETLPSADAMINPNLADCAFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ ++ LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMMALFVRLRDSGWFAQRNLAVPNLTELLDLVALGTVADVVPLDANNRILVAQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G++AL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ DD + M Sbjct: 258 GKCRAGIRALLEVSNRDAAQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDDIVQARM 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ RR +E M +A + S + + WH G+VG+LA+RL Sbjct: 318 LASELDALNQTRREIEQGMQVEALQLCEQLERSQTTLPSGVAMYHPEWHQGVVGILASRL 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGVLKGSGRSIPGLHLRDALERLDTLHPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F R F + + A V DG L A + + +ML AGP+G P Sbjct: 438 EAHQFDRFRARFGELVSEWLDASHLEGVIWSDGELAAPELTLGTAEMLREAGPWGQSFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLMQSRGKR 564 P F ++ R++ HL+ FE L IAF V + K Sbjct: 498 PAFDGR-FRILKPRLLKERHLKALFEPIGGTGQVPLLDGIAFNVDTATWPD----PSIKE 552 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L +N +RG + QL + P+ Sbjct: 553 VEMVYRLEINEYRGKRSVQLLIEHLWPL 580 >gi|253687048|ref|YP_003016238.1| single-stranded-DNA-specific exonuclease RecJ [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753626|gb|ACT11702.1| single-stranded-DNA-specific exonuclease RecJ [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 584 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 180/573 (31%), Positives = 279/573 (48%), Gaps = 29/573 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V A L S+ L+ + +L+ D A + + + I+I Sbjct: 20 VPPLLRRLYAQRGV---KAAQELERSLSGLL-NYRLLSGIDNAVDLLQKTLAEKRCIVIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L VN +P+R DGYG +P ++ + GA++I+TVD Sbjct: 76 GDFDADGATSTALTVLALRSMGCVNVKYLVPNRFEDGYGLSPEVVAQAAALGAEVIVTVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A++NPN D L GV F Sbjct: 136 NGISSHAGVEDAHRRGITVLVTDHHLPGEILPDADAMINPNLPDCQFPSKALAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 +++ ++ LR + +L LLDLVAL TV DVVPL NR V +GL Sbjct: 196 LMMALFVRLRDSDWFTQPLFTQQGLVKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 255 Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R PG++AL+E N S + + +LG+ +GP +NA GR+ + +G LL+SDD Sbjct: 256 NRIRAGECRPGIRALLEVANRDASQLVSSDLGFALGPRLNAAGRLHDMKIGVELLLSDDI 315 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385 + +LA +L+ +NQ+RR +E M +A + + + + + WH G+VG+ Sbjct: 316 VQARILANELNDMNQDRRDIEQGMQAEALHLCESLERTRTELPYGLAMYHPEWHQGVVGI 375 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443 LA+R+KE+F RP A + DG GSGRSI G + + G++ K GGHAMA Sbjct: 376 LASRIKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLYPGMMEKFGGHAMA 435 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502 AGL++ F F + + V DG L ++ ++ +ML AGP+ Sbjct: 436 AGLSLHEDRFEDFRQRFGELVGEWLDPSQLEGVVWSDGELVLPELDLLSTAEMLRYAGPW 495 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558 G P P F ++ R++ HL+ FE + L IAF V T + Sbjct: 496 GQSFPEPTFDGR-FRILQPRLLKERHLKAMFEPIGATGKVPLLDGIAFNVDTTIWPD--- 551 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K + + L +N +RG + QL + P Sbjct: 552 -PSIKEVEIVYRLDINEFRGKRSVQLLIQHLWP 583 >gi|320195011|gb|EFW69640.1| Single-stranded-DNA-specific exonuclease RecJ [Escherichia coli WV_060327] Length = 577 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + ++ G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDVLERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|24114146|ref|NP_708656.1| ssDNA exonuclease RecJ [Shigella flexneri 2a str. 301] gi|30064204|ref|NP_838375.1| ssDNA exonuclease RecJ [Shigella flexneri 2a str. 2457T] gi|24053286|gb|AAN44363.1| ssDNA exonuclease [Shigella flexneri 2a str. 301] gi|30042461|gb|AAP18185.1| ssDNA exonuclease [Shigella flexneri 2a str. 2457T] gi|281602225|gb|ADA75209.1| SsDNA exonuclease [Shigella flexneri 2002017] gi|313647932|gb|EFS12378.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri 2a str. 2457T] gi|332752929|gb|EGJ83313.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri 4343-70] gi|332753728|gb|EGJ84107.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri K-671] gi|332754560|gb|EGJ84926.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri 2747-71] gi|332765823|gb|EGJ96036.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri 2930-71] gi|332999675|gb|EGK19260.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri VA-6] gi|332999961|gb|EGK19544.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri K-218] gi|333000721|gb|EGK20296.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri K-272] gi|333015013|gb|EGK34356.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri K-304] gi|333015223|gb|EGK34565.1| single-stranded-DNA-specific exonuclease RecJ [Shigella flexneri K-227] Length = 577 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|145637031|ref|ZP_01792694.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittHH] gi|145269685|gb|EDK09625.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittHH] Length = 575 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHLFNQTVADWFDEEHLQSIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574 >gi|90962066|ref|YP_535982.1| single-stranded-DNA-specific exonuclease [Lactobacillus salivarius UCC118] gi|90821260|gb|ABD99899.1| Single-stranded-DNA-specific exonuclease [Lactobacillus salivarius UCC118] Length = 777 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 194/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + E + + ++ P IV ++L+ R + +FL+P R L DP Sbjct: 6 KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + RI QAI N EKI+I+GDYDVDG S ALM L YIPDR DG Sbjct: 64 MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRFKDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ I+EG LI+TVD G ++A+ YA G+DV+V DHH++ AYA+ Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + G L GV F V + L QD +LDLVAL TV D+V Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V GL + ++ PGL++L + I IT E +G+ + P +NA GR+ Sbjct: 233 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRMEN 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LL + D + E LA + LN R+ + ++E+A A++ + + V VV Sbjct: 293 GSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKS---ENHLVNVV 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432 G+ WH G+VG++A+RL + G+PS +S +E G GSGRSIE F + + Sbjct: 350 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQM--FDALDSHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH MA GL+++R L + T PV K+ +N VN+ L Sbjct: 408 ILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLGL 466 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 LE+ P+G NP PVF F ++++ +++ + HL++ +S +S+ + A+ F + Sbjct: 467 EAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + E + + G L N W+ Q+ + D Sbjct: 526 KKISEIERNKN--SVRLIGTLGKNVWQSRVNLQIMIEDI 562 >gi|293412251|ref|ZP_06654974.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B354] gi|291469022|gb|EFF11513.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli B354] Length = 577 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSA---HELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|210623792|ref|ZP_03294052.1| hypothetical protein CLOHIR_02003 [Clostridium hiranonis DSM 13275] gi|210153374|gb|EEA84380.1| hypothetical protein CLOHIR_02003 [Clostridium hiranonis DSM 13275] Length = 822 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 179/579 (30%), Positives = 287/579 (49%), Gaps = 19/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W G T+K + ++++L NRN+ S + K F NPS+ L DP + Sbjct: 2 KKWTL--IHRGKPDVTDETEKFKLSPEISQILENRNINSEEEIKLFTNPSLDYLR-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KAA RI +AI +E++ I+GDYDVDG +S ++++ + + + YIP+R+ +G Sbjct: 59 MKDMGKAAERIKKAIELNERVWIYGDYDVDGVSSTSVLLTYFRSINFDVKYYIPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E +EG LII+VDCG TS D ++YA GI++I+ DHH+ +SE AYA+ Sbjct: 119 YGINKEAIEYINSEGCDLIISVDCGITSVDEVEYANELGIEMIITDHHECQSEIPNAYAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + D LC G+ F ++ + + +++ LAT+CD+V Sbjct: 179 VNPKQDDCNYPFDMLCGCGIAFKLVQAL------TPPEVFKTTVYDYIEIATLATICDIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL+ NR V GL + N GL LI + I + ++G+ IGP INA GR+G Sbjct: 233 PLVDENRIIVKNGLKAMKNGHNLGLSELINVCGVDKEKIGSSHIGFTIGPRINAAGRLGF 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 S+LG L + D +A+ LD N +R+++E + +AE + + VIV+ Sbjct: 293 SDLGVELFTATDKDTAHEIALALDEKNNDRQMIEMKIHHEAETII-KNDPSYEDDKVIVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W G++G++A++L EK+ +P+ + EDG+ GS RSI+GF I ++ I Sbjct: 352 AHEGWQHGVIGIVASKLTEKYYKPTILM-CIEDGEATGSARSIKGFSIFDALTEC--ADI 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGH AAGL++ L + A + K++ L+ + N LI Sbjct: 409 LTKFGGHEQAAGLSISADKVPELRRRINESADINLTEEDMIEEIKVEYELDEKSANFDLI 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 + L P+G NP P F + L+ +R + + E + + + F Sbjct: 469 EELRKLEPFGMSNPTPKFILRDCILRDMRFMGQNKQHIKLEIEKESVFECVGFNAAHLID 528 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G G R+ V L N + G ++ Q V D Sbjct: 529 G----LKNGDRIDVLFQLDENTFMGKRKLQFLVKDLRLA 563 >gi|296283974|ref|ZP_06861972.1| single-stranded-DNA-specific exonuclease RecJ [Citromicrobium bathyomarinum JL354] Length = 600 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 239/594 (40%), Positives = 336/594 (56%), Gaps = 15/594 (2%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRL 67 GVE S+ G W G + A DI+ ++L+ R V+ D + P + Sbjct: 15 GVERSLGGRSWRWRGGPNQYDGPAA---SLG-DDILTQLLLARGVARDDLERQREPKLAA 70 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 +PDP I D + AA R+ QAI EK+ I+GDYDVDGA S AL++R A+ YI Sbjct: 71 FLPDPAIFQDMEAAAERLAQAILTREKVTIYGDYDVDGATSAALLIRLFGMLGHEADYYI 130 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDR+++GYGP+ + K +G+ L++TVDCG+ +++AL A + G++VIVIDHH+ E Sbjct: 131 PDRLLEGYGPSGEALVKLGEQGSSLVVTVDCGAMAHEALAAARDAGVEVIVIDHHKCSHE 190 Query: 188 EIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLL 242 PA ALVNPNRLD+ GHL A GV FLV + + R LR DL LL Sbjct: 191 RPPALALVNPNRLDEADEAAAHGHLAAVGVAFLVAIALVRKLRTHGYFKDRKEPDLRGLL 250 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DLVAL TV DV L GLNRA+V +GL V ++ N G+ ALI+ ++ + +LG+ +G Sbjct: 251 DLVALGTVADVAALHGLNRAFVSQGLKVMAKRANIGMSALIDASRLTRAPISSDLGFALG 310 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INAGGR+GES LG RLL ++D +E +A +L LN+ RR +E+ + E EA++ Q Sbjct: 311 PRINAGGRVGESTLGVRLLTTEDPEEAAQIAAQLSQLNEERRAIEAEVQEAGEAQLAGQG 370 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDI 421 +V +V GD WHPG++G++A R+KEK GRPS I+ + G G GSGRSI G D+ Sbjct: 371 ----NRAVRIVHGDGWHPGVIGIVAGRIKEKTGRPSLVIARDSQAGLGKGSGRSIPGVDL 426 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G + A EEG+L GGGHAMAAGLTV D+ + V A D Sbjct: 427 GAAIMAAREEGLLEAGGGHAMAAGLTVHEDKIEAFTDWLESRLERQVAAASAEASLGFDL 486 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L + + L++ LE GPYG G P P A L + V H+++ S+D ++ Sbjct: 487 SLGPRGLTVELVETLERGGPYGMGWPGPRIAIGPVHLVKVDRVGSDHVRLLAGSRDGGSI 546 Query: 542 QAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 +AIAFR + G+ L+ G RM + G V+ W + R +L + DA+ +E Sbjct: 547 KAIAFRAADSDWGQALLAAHPGTRMWLAGRAKVDTWANTPRAELHLEDAAFIEP 600 >gi|161936328|ref|YP_128793.2| ssDNA exonuclease RecJ [Photobacterium profundum SS9] Length = 574 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 178/561 (31%), Positives = 277/561 (49%), Gaps = 20/561 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 P ++ R+ +R ++ + L + L+ L A + +V A+ + +I+I G Sbjct: 20 PPLLQRIYASRGIASE---LELERGAKGLLSY-EQLHGIKPAVQLLVTALAENRRIIIVG 75 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L N + IP+R+ DGYG +P ++++ GA++I+TVD Sbjct: 76 DFDADGATSSALSVLALRMLGCSNVDYLIPNRVEDGYGLSPEVVDQAEARGAEVIMTVDN 135 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S + A +G+ V+V DHH E A A+VNPN LC GV F + Sbjct: 136 GVSSIAGVAAAKAKGMQVLVTDHHLQGKELPIADAIVNPNLDVCTFPSKALCGVGVAFYI 195 Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 ++ + LR N +L LLDLVAL TV DVV L G NR V +GL R Sbjct: 196 MLALRAELRNINWFEQQGIPVPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAG 255 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG++ALIE N + +LG+ +GP INA GR+ + + G LL+ + Q + Sbjct: 256 KCRPGIQALIEVANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRM 315 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391 A +LD LNQ R+ +E M E+A A + Q + WH G++G+LA+R+K Sbjct: 316 ASELDGLNQTRKEIEHGMKEEALAICERISFNQQDMPYGLALFQRDWHQGVIGILASRIK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 + + RP A + +G+ GS RSI G + ++ G+++K GGHAMAAGLT+ Sbjct: 376 DLYHRPVIAFADAGEGEIKGSCRSIPGLHMRDVLDLIDTRNPGMILKFGGHAMAAGLTIP 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F + + VF DG L A+ +NI ++L + GP+G P P Sbjct: 436 EDQLTGFSKAFDDIVRSQLDEDALKGVFLTDGELAANELNIETAEVLRNGGPWGQQFPEP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F +L ++V HL+M E + AIAF V + + +++ + Sbjct: 496 SFDGR-FRLLHQKLVGSKHLKMMVEPINGGSVIDAIAFNVDLKSWPD----ASVQQVDLV 550 Query: 569 GHLCVNYWRGSKRCQLRVLDA 589 L VN +RG++ QL + Sbjct: 551 YRLDVNEFRGNRSVQLMIEHL 571 >gi|46912196|emb|CAG18991.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium profundum SS9] Length = 608 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 178/561 (31%), Positives = 277/561 (49%), Gaps = 20/561 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 P ++ R+ +R ++ + L + L+ L A + +V A+ + +I+I G Sbjct: 54 PPLLQRIYASRGIASE---LELERGAKGLLSY-EQLHGIKPAVQLLVTALAENRRIIIVG 109 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L N + IP+R+ DGYG +P ++++ GA++I+TVD Sbjct: 110 DFDADGATSSALSVLALRMLGCSNVDYLIPNRVEDGYGLSPEVVDQAEARGAEVIMTVDN 169 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S + A +G+ V+V DHH E A A+VNPN LC GV F + Sbjct: 170 GVSSIAGVAAAKAKGMQVLVTDHHLQGKELPIADAIVNPNLDVCTFPSKALCGVGVAFYI 229 Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 ++ + LR N +L LLDLVAL TV DVV L G NR V +GL R Sbjct: 230 MLALRAELRNINWFEQQGIPVPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAG 289 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG++ALIE N + +LG+ +GP INA GR+ + + G LL+ + Q + Sbjct: 290 KCRPGIQALIEVANRDPARLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRM 349 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLK 391 A +LD LNQ R+ +E M E+A A + Q + WH G++G+LA+R+K Sbjct: 350 ASELDGLNQTRKEIEHGMKEEALAICERISFNQQDMPYGLALFQRDWHQGVIGILASRIK 409 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 + + RP A + +G+ GS RSI G + ++ G+++K GGHAMAAGLT+ Sbjct: 410 DLYHRPVIAFADAGEGEIKGSCRSIPGLHMRDVLDLIDTRNPGMILKFGGHAMAAGLTIP 469 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F + + VF DG L A+ +NI ++L + GP+G P P Sbjct: 470 EDQLTGFSKAFDDIVRSQLDEDALKGVFLTDGELAANELNIETAEVLRNGGPWGQQFPEP 529 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F +L ++V HL+M E + AIAF V + + +++ + Sbjct: 530 SFDGR-FRLLHQKLVGSKHLKMMVEPINGGSVIDAIAFNVDLKSWPD----ASVQQVDLV 584 Query: 569 GHLCVNYWRGSKRCQLRVLDA 589 L VN +RG++ QL + Sbjct: 585 YRLDVNEFRGNRSVQLMIEHL 605 >gi|284922840|emb|CBG35929.1| single-stranded DNA-specific exonuclease [Escherichia coli 042] Length = 577 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHVGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|26249307|ref|NP_755347.1| ssDNA exonuclease RecJ [Escherichia coli CFT073] gi|215488192|ref|YP_002330623.1| ssDNA exonuclease RecJ [Escherichia coli O127:H6 str. E2348/69] gi|218691017|ref|YP_002399229.1| ssDNA exonuclease RecJ [Escherichia coli ED1a] gi|227888441|ref|ZP_04006246.1| ssDNA exonuclease RecJ [Escherichia coli 83972] gi|300980314|ref|ZP_07174968.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 45-1] gi|301049324|ref|ZP_07196294.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 185-1] gi|312964848|ref|ZP_07779088.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 2362-75] gi|26109715|gb|AAN81920.1|AE016766_8 Single-stranded-DNA-specific exonuclease recJ [Escherichia coli CFT073] gi|215266264|emb|CAS10693.1| ssDNA exonuclease, 5-3'-specific [Escherichia coli O127:H6 str. E2348/69] gi|218428581|emb|CAR09508.2| ssDNA exonuclease, 5'--> 3'-specific [Escherichia coli ED1a] gi|227834710|gb|EEJ45176.1| ssDNA exonuclease RecJ [Escherichia coli 83972] gi|300298923|gb|EFJ55308.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 185-1] gi|300409322|gb|EFJ92860.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 45-1] gi|307554868|gb|ADN47643.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli ABU 83972] gi|312290404|gb|EFR18284.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli 2362-75] gi|315293875|gb|EFU53227.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 153-1] gi|324005544|gb|EGB74763.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 57-2] Length = 577 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+A+ + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|306812206|ref|ZP_07446404.1| ssDNA exonuclease RecJ [Escherichia coli NC101] gi|222034587|emb|CAP77329.1| Single-stranded-DNA-specific exonuclease recJ [Escherichia coli LF82] gi|305854244|gb|EFM54682.1| ssDNA exonuclease RecJ [Escherichia coli NC101] gi|312947425|gb|ADR28252.1| ssDNA exonuclease RecJ [Escherichia coli O83:H1 str. NRG 857C] Length = 577 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 284/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+A+ + + + +L AGP+G P Sbjct: 438 EEEKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|187732306|ref|YP_001881661.1| ssDNA exonuclease RecJ [Shigella boydii CDC 3083-94] gi|187429298|gb|ACD08572.1| single-stranded-DNA-specific exonuclease RecJ [Shigella boydii CDC 3083-94] Length = 577 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRPLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|170683389|ref|YP_001745045.1| ssDNA exonuclease RecJ [Escherichia coli SMS-3-5] gi|170521107|gb|ACB19285.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli SMS-3-5] Length = 577 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSA---HELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDMLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|292487144|ref|YP_003530014.1| single-stranded DNA-specific exonuclease [Erwinia amylovora CFBP1430] gi|292900475|ref|YP_003539844.1| single-stranded-DNA-specific exonuclease [Erwinia amylovora ATCC 49946] gi|291200323|emb|CBJ47451.1| single-stranded-DNA-specific exonuclease [Erwinia amylovora ATCC 49946] gi|291552561|emb|CBA19606.1| Single-stranded DNA-specific exonuclease [Erwinia amylovora CFBP1430] Length = 572 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 193/560 (34%), Positives = 279/560 (49%), Gaps = 17/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ +R VS L + L P L+ D+A + +A+ ++ IMI Sbjct: 21 DLHTLLRRLYAHRGVSRA---CELERGAKNLHP-FQSLSGIDQAVTILQKALLDNLCIMI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N +P+R DGYG +P ++E+ GAQLI+TV Sbjct: 77 VGDFDADGATSTALTVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAVRGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A +GI VIV DHH A A+VNPN D L GV F Sbjct: 137 DNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275 +++ + LR D L +L LLDLVAL TV DVVPL NR V +GL R + Sbjct: 197 YLMLALRARLRDDGVNTL-PNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKC 255 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++AL+E N + A +LG+ +GP +NA GR+ + ++G LL+S+D + MLA Sbjct: 256 RPGIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLSEDLAQARMLAS 315 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + + I + WH G+VG+LA+RLKE+ Sbjct: 316 ELDALNQTRKEIEQGMQSEALTLCNRLESASEALPLGIAMYHPEWHQGVVGILASRLKER 375 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + DG GSGRSI G + ++ G++VK GGHAMAAGL+++ Sbjct: 376 FHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTLHPGLIVKFGGHAMAAGLSLQEA 435 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + A V DG L A + + ++L AGP+G P P F Sbjct: 436 KFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLRDAGPWGQAFPEPTF 495 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 KL R+V HL++ E L IAF V + K++ + Sbjct: 496 DGK-FKLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTALWPD----PAVKQVELAYK 550 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL + Sbjct: 551 LDVNEYRGNRNVQLIIDHLW 570 >gi|254419621|ref|ZP_05033345.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas sp. BAL3] gi|196185798|gb|EDX80774.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas sp. BAL3] Length = 603 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 223/592 (37%), Positives = 328/592 (55%), Gaps = 7/592 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 D AFLGV S+SG W + RA Q + + +AR L +R V D DFL Sbjct: 10 DNAFLGVTQSLSGRAWRQRPAEAATIRAH--MQGLGLEEPLARALASRGVRADQGADFLT 67 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R L PDP D D AA ++ A ++ IF DYDVDGA+S AL++R+ + Sbjct: 68 PTLRALFPDPSSFMDMDAAAEALLDAFQAKSQVHIFADYDVDGASSAALLVRWFRAMGAD 127 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +Y+PDR+ +GYGP+ + GA L++TVDCG+ + +AL +A ++V+VIDHH Sbjct: 128 LPIYVPDRLTEGYGPSAKAFDTLKAAGADLVVTVDCGAAANEALAHAAAIDLNVVVIDHH 187 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240 ++SE A A+VNPNR SGQG+L AAGVVF++L + R R+ D+ Sbjct: 188 LMRSEPPRALAVVNPNRPGCNSGQGNLAAAGVVFVLLAALNREARRRGLFADRPEPDIRQ 247 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGY 299 LDL AL +CDV L G NRA GL V NPGL+AL+ + G+ Sbjct: 248 WLDLAALGAICDVTALTGFNRALTGLGLKVMSDWKNPGLRALLAAAGAEQGPAKSNHAGF 307 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP INAGGRIG S+LG+RLL +DD E + LA++LD LN +RR +E A+ E A +V Sbjct: 308 ILGPRINAGGRIGRSDLGARLLSTDDPAEAQALALELDALNLSRREVERAVTEAAVRRVE 367 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEG 418 + +++VV G+ WHPG+VG++A RL+E++ +P I + G G GSGRS G Sbjct: 368 ATGAHADETALVVVAGEDWHPGVVGIVAGRLRERWRKPVIVIGLDPVTGLGKGSGRSQPG 427 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 ++G+ + A E G+L+ GGGHAMAAGLT++ L DF + + Sbjct: 428 MNLGRAIQAAWEAGVLLAGGGHAMAAGLTMDGARLAELTDFLNDRLAGERIEAVAMDALE 487 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 ID +++ A AL + E P+G NP PVFA + + +N H++ D Sbjct: 488 IDALIDPGAATRALFESFEQLAPFGPSNPEPVFALNGVQAREPVQMNGGHVRCRLVGPDG 547 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +++A+A+R P G+ L+ +G ++V G L + W G + Q + D + Sbjct: 548 ASVRAVAWRCADLPTGQALLSGQGG-LNVVGRLKADDWNGRRGVQFEIEDVA 598 >gi|312962842|ref|ZP_07777329.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens WH6] gi|311282869|gb|EFQ61463.1| single-stranded-DNA-specific exonuclease [Pseudomonas fluorescens WH6] Length = 569 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 178/561 (31%), Positives = 278/561 (49%), Gaps = 18/561 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V + L+ S+ L+P L D A +V A+ ++I+I Sbjct: 18 LPPLLTRLYAARGVQSE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALEQRQRILIV 73 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA + + L + + +P+R GYG P ++ + QL+ITVD Sbjct: 74 GDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVD 133 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 134 NGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFY 193 Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 VL+ + LR ++ LLDLVAL +V DVVPL NR V +GL R + Sbjct: 194 VLMALRARLRDLGWYANTPQPNIGDLLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253 Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG+KA++E + IT+ +LG+++GP +NA GR+ + +LG L++ D+ +A Sbjct: 254 ARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDAAAAREMA 313 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD +NQ+R+ +E M +A A++ D + + WH G++G+LA+R+KE+ Sbjct: 314 AQLDGMNQDRKSIEQGMQREALAQLKDLPVD-SMPYGLCLFDPEWHQGVIGILASRMKER 372 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 + RP+ A + DG GSGRS++GF I ++ ++ K GGHAMAAGLT+ Sbjct: 373 YFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLIAKYGGHAMAAGLTLPEA 432 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 NF + F + T DG L ++ L L AGP+G P P+F Sbjct: 433 NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 +L RVV HL++ +S+ S L IAF V E + + + Sbjct: 493 HG-VFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDR----EVWPNPTVRWVELAYK 547 Query: 571 LCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL + P Sbjct: 548 LDVNEFRGNETVQLMIAHIEP 568 >gi|257881033|ref|ZP_05660686.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,502] gi|293560337|ref|ZP_06676833.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1162] gi|294620545|ref|ZP_06699846.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium U0317] gi|314939161|ref|ZP_07846418.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133a04] gi|314943930|ref|ZP_07850647.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133C] gi|314948040|ref|ZP_07851443.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0082] gi|314953285|ref|ZP_07856216.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133A] gi|314993370|ref|ZP_07858737.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133B] gi|314994956|ref|ZP_07860077.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133a01] gi|257816691|gb|EEV44019.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,502] gi|291599782|gb|EFF30786.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium U0317] gi|291605698|gb|EFF35136.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1162] gi|313590813|gb|EFR69658.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133a01] gi|313592154|gb|EFR70999.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133B] gi|313594667|gb|EFR73512.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133A] gi|313597434|gb|EFR76279.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133C] gi|313641541|gb|EFS06121.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0133a04] gi|313645520|gb|EFS10100.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TX0082] Length = 765 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 177/581 (30%), Positives = 276/581 (47%), Gaps = 31/581 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LIHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I EG QLIITVD G DA+ YA G+DVI+ DHH++ AYA Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E + E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + ++A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRSIE ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L+ P +ID VL + V + Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVER 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 ID L+ P+G NP P F F + ++I+ + HL+ S+ L A+AF +G Sbjct: 464 IDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T E L ++ V G L +N W G K+ QL V D S Sbjct: 522 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 558 >gi|192361064|ref|YP_001982094.1| single-stranded-DNA-specific exonuclease RecJ [Cellvibrio japonicus Ueda107] gi|190687229|gb|ACE84907.1| single-stranded-DNA-specific exonuclease RecJ [Cellvibrio japonicus Ueda107] Length = 597 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 167/566 (29%), Positives = 276/566 (48%), Gaps = 25/566 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRL-LMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ R + + + + L P+ D+ +V A+ ++++ Sbjct: 38 LHPLLQRIYSARGIQQEAELQY---QLTHMLKPN---FKGLDETVGLLVDAVVAQARVLV 91 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + + +P+R GYG P ++ + +I+TV Sbjct: 92 VGDFDADGATSSALAVLALRAMGLKQVDFLVPNRFEYGYGLTPEIVAVAAAQQPDVILTV 151 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++ A + GI VI+ DHH + A A+VNPN+ +L GV+F Sbjct: 152 DNGISSIEGVEAARDLGIAVIITDHHLPGAHLPDADAIVNPNQPGCPFPSKNLAGVGVIF 211 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V+ + LR ++ S LDLVAL TV DVVPL NR V +GL R Sbjct: 212 YVMNALRGALRDMGWFAESGIAEPNMASFLDLVALGTVADVVPLDHNNRILVSQGLARMR 271 Query: 273 RQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG+ AL+E + A +LG+ +GP +NA GR+ + +LG + L+ D Sbjct: 272 AGAARPGIMALLEVAGRQPQRLVASDLGFAVGPRLNAAGRMDDMSLGIQCLLCDSLPLAR 331 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI--VVEGDRWHPGIVGLLAA 388 +A +LD LN++R+ +E+ M ++A + + + A + + WH G++G+LA+ Sbjct: 332 EMAAQLDELNRDRKAIETGMQQEAMGMLQKVLNADENALPWGLCLFDETWHQGVIGILAS 391 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGL 446 R+K+++ RP+ + DG GS RSI G I + A +L K GGHAMAAG+ Sbjct: 392 RIKDRYHRPTIVFADAGDGLIKGSARSIPGLHIRDALDAVAARRPDLLQKFGGHAMAAGM 451 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 +++R +F F + H + A V DG L+AS ++ L L +AGP+G Sbjct: 452 SLQREHFEAFAKAFDEEVHRQLRAEDLQAVVVTDGELSASDFSLPLAAQLRNAGPWGQHF 511 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMT--FESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 P PVF + ++V HL+MT +S+ + + AIAF + + +R Sbjct: 512 PEPVFDGE-FYVLQQKLVGDKHLKMTLALDSRGQQLVDAIAFNIDPGLWP----NQQVQR 566 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L +N +RG+ QL V Sbjct: 567 VRLAYKLDINEFRGNTNLQLMVDYLE 592 >gi|320182205|gb|EFW57108.1| Single-stranded-DNA-specific exonuclease RecJ [Shigella boydii ATCC 9905] Length = 577 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KESFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|149021571|ref|ZP_01835626.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP23-BS72] gi|147930267|gb|EDK81252.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP23-BS72] Length = 740 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFITFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|157162352|ref|YP_001459670.1| ssDNA exonuclease RecJ [Escherichia coli HS] gi|157068032|gb|ABV07287.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli HS] Length = 577 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCCPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|301027810|ref|ZP_07191115.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 196-1] gi|299879072|gb|EFI87283.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 196-1] Length = 577 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSAALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|300921224|ref|ZP_07137597.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 115-1] gi|300411830|gb|EFJ95140.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 115-1] Length = 577 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 175/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++ PN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIITPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|312883962|ref|ZP_07743679.1| ssDNA exonuclease RecJ [Vibrio caribbenthicus ATCC BAA-2122] gi|309368420|gb|EFP95955.1| ssDNA exonuclease RecJ [Vibrio caribbenthicus ATCC BAA-2122] Length = 578 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 176/568 (30%), Positives = 277/568 (48%), Gaps = 24/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++ ++ R+ +R V + LN ++R L + D A + + AI ++I++ Sbjct: 18 SLHPLLRRIYSSRGVLSEQQ---LNTTVRALHSYQELF-GIDTAVKMLFAAIETKKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + + +P+R DGYG +P ++E+ + GAQ+I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSDNVDYLVPNRFEDGYGLSPEVVEQAMELGAQMIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + ++YA GI+VIV DHH E A A+VNPN L GV F Sbjct: 134 DNGVSSIEGVKYAKQCGIEVIVTDHHLPGHELPMADAMVNPNLQQCQFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVHMRNVGWFSRQSMSEPKLMELVDLVALGTVADVVPLDKNNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKARPGIQALIEVSKRDAKRLIASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ+R+ +E M ++A A Q D +V+ WH G++G+LA+R Sbjct: 314 RMASELDGLNQSRKEIEEGMKQEAMAFCERLQFGDKDMPYGLVLFQRDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEKF RP A + G GS RSI G + + G+++K GGHAMAAGL+ Sbjct: 374 IKEKFHRPVIAFADGGGGTIKGSCRSIPGLHMRDALDRIDKQNPGLILKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F F + + V DG L ++ + L S GP+G P Sbjct: 434 IAEKDFECFSSLFDQAVKQDLDEAALKGVILSDGELIPEDFSLHTAEALRSGGPWGQAFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFE-----SQDSETLQAIAFRVYGTPLGEFLMQSRG 562 P+F K+ ++V HL++ E + L IAF + + + Sbjct: 494 EPIFDGE-FKVLHQKLVGEKHLKLMLEPLFRGQPTNLMLDGIAFNIDLRRWPD----AST 548 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 K + + L +N +RG++ QL + Sbjct: 549 KTVRLAYKLDINEFRGNQSLQLLIDHIE 576 >gi|290476400|ref|YP_003469305.1| 5'->3'-specific Mg-dependent ssDNA exonuclease [Xenorhabdus bovienii SS-2004] gi|289175738|emb|CBJ82541.1| ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent [Xenorhabdus bovienii SS-2004] Length = 577 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 272/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +I ++ R+ R + L + L+ + L ++A ++ A+Y+ +I+I Sbjct: 21 SIHPLLRRLYAMRGIRQADE---LERGAKGLL-NYQSLNGIEQAVSLLITALYDHSRIVI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL +R L N + +P+R DGYG + ++ + + +GA LIITV Sbjct: 77 VGDFDTDGATSTALCIRALRAMGYRNLDYLVPNRFEDGYGLSVQIVNEVVKKGADLIITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S++ + A I V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHEGVAAAHQHSIKVLVTDHHLPGETLPAADAIINPNLHDCTFPSKALAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR+ +L LLDLVAL V DVVPL NR +V +GL R Sbjct: 197 YLMSALRAELRRIAWFEQQGIPLPNLAELLDLVALGIVADVVPLDTNNRIFVYQGLNRIR 256 Query: 273 RQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 L S+ + A +LG+ +GP +NA GR+ + ++G LL++DD + Sbjct: 257 AGRCCVGIRALLEISKRESTKLAASDLGFSLGPRLNAAGRLDDMSVGVALLLTDDMVQAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + Q +V+ WH G+VG+LA+R Sbjct: 317 QIACELDGLNQTRREIEQGMQQEALQICDQFERTCTQLPYGLVIYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRS+ G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSVNGLHMRDALERLDTRHPGLILKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E+ F F + + V DG L +++ + ++L GP+G Sbjct: 437 IEQDKFDLFQRHFSALMADWLDISQLGGVVWSDGELALGELSLEIAEILREGGPWGQAFA 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F KL R+V HL++ E L IAF + + + K + Sbjct: 497 EPIFDGK-FKLLQQRIVGEKHLKVMLEPLNGGPMLDGIAFNIDTHRWPD----NSVKTVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 552 LAYKLDINEFRGNRDVQLLIQHIWP 576 >gi|228476930|ref|ZP_04061575.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus salivarius SK126] gi|228251504|gb|EEK10649.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus salivarius SK126] Length = 741 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 173/605 (28%), Positives = 287/605 (47%), Gaps = 34/605 (5%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KD 59 M + + + S + W + + ++H + + A++ R V+ + A +D Sbjct: 1 MTGRKYKNMITST--YDWKINTKEPD-AGFFKLAKEHGLAETAAKIAYERGVTTEEALED 57 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FL + L DP +L D DKA RI QAI N E+I+++GDYD DG S +++ L Sbjct: 58 FLKSDLSHLH-DPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEML 116 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIV 178 A +Y+P+R DGYGPN S+ + FI + LI+TVD G +A+ YA QG+DVIV Sbjct: 117 GAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVVGNEAIAYAQEQGVDVIV 176 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238 DHH + ++ A+A+V+P D +L GV F + + + Sbjct: 177 TDHHSMSAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP----------- 225 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENL 297 +LDLVA+ T+ D+V L NR V GL + + GL+ L+ ++ I+ E + Sbjct: 226 TEMLDLVAIGTIADMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETV 285 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+ + P +NA GR+ + N LL D +E + +A++++ N+ R+ + + ++A Sbjct: 286 GFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTM 345 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 V V V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E Sbjct: 346 VDL------DKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLE 398 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 +I + I GGHA AAG+T+ N G+L D + ++ Sbjct: 399 SINI--FHALDDHRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIDTSAKNTL 456 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES 535 +D L S +++ I LE P+G N PVF + + R + HL+ + Sbjct: 457 NLDEELQLSELSLDTIKSLEKLAPFGMDNKKPVFWLRDITVTQARTMGQNGAHLKFKVK- 515 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 Q ++ +AF L + Q++G + + L VN W G QL + DA Sbjct: 516 QGKDSFDVVAFNKGN--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVDGVQ 571 Query: 596 HFAKK 600 F + Sbjct: 572 LFDFR 576 >gi|145635063|ref|ZP_01790769.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittAA] gi|145267671|gb|EDK07669.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittAA] Length = 575 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGFQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL TV DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDELNQMRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ I++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + + + DG LN++ N+ ++++S G +G G P P F Sbjct: 435 YFADFQHLFNQTIADWLDEEHLQGIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574 >gi|331654390|ref|ZP_08355390.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli M718] gi|331047772|gb|EGI19849.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli M718] Length = 577 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 174/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++ L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGML-SWQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + + + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSDIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|323188709|gb|EFZ73994.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli RN587/1] Length = 577 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 FPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI+G + ++ G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDVLERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|317493834|ref|ZP_07952251.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918161|gb|EFV39503.1| single-stranded-DNA-specific exonuclease RecJ [Enterobacteriaceae bacterium 9_2_54FAA] Length = 577 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 179/566 (31%), Positives = 279/566 (49%), Gaps = 22/566 (3%) Query: 38 AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 + ++ RV NR + ++ L S++ L+ L+ ++A + QA+ ++I+ Sbjct: 21 DLHPLLRRVYANRGILNVQE----LERSVKGLLSY-QKLSGIERAVELLHQALSEHQRIV 75 Query: 97 IFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 I GD+D DGA S AL M L N +P+R DGYG +P ++E+ GA+LI+T Sbjct: 76 IVGDFDADGATSTALSMLALRSMGAANVQYLVPNRFEDGYGLSPEVVEQAAAMGAELIMT 135 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G +S+ + A ++GI V+V DHH A A+VNPN D L GV Sbjct: 136 VDNGISSHAGVDNAHDRGIKVLVTDHHLPGETLPAADAIVNPNLNDCDFPSKSLAGVGVA 195 Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 F +++ + + L + + +L LLDLVAL TV DVV L NR V +GL Sbjct: 196 FYLMLALRKHLHEHGWFEKHGISAPNLADLLDLVALGTVADVVALDTNNRILVHQGLNRI 255 Query: 272 RR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 R + G++AL+E N + A +LG+ +GP +NA GR+ ++G LL+ +D + Sbjct: 256 RAGKCRVGIRALLEISNRDARQLVASDLGFALGPRLNAAGRLDNMSVGVELLLCEDMPQA 315 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAA 388 LA LD LN RR +E M +A + ++ + + WH G+VG+LA+ Sbjct: 316 RALASDLDSLNVTRREIEQGMQVEALQICSELERTTVEMPYGLALYHPEWHQGVVGILAS 375 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGL 446 R+KE+F RP A + DG GSGRSI G + + + G+++K GGHAMAAGL Sbjct: 376 RIKERFYRPVIAFAPAGDGILKGSGRSIHGLHMRDALERIDSQNPGLIMKFGGHAMAAGL 435 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++E F F + + A V DG L +++ ++L GP+G Sbjct: 436 SLEEARFDEFRLRFAELVGEWLDASQLEGVIWSDGELAMDELSLPTAELLRDGGPWGQAF 495 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P+P F K+ R+V HL++ E L IAF V T + + + Sbjct: 496 PDPTFDGK-FKILQQRLVGERHLKLMVEPVGGGPLLDGIAFNVDTTLWPD----PSVREV 550 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 551 ELAYKLDINEYRGNRSVQLMIQHLWP 576 >gi|170765783|ref|ZP_02900594.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia albertii TW07627] gi|170124929|gb|EDS93860.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia albertii TW07627] Length = 577 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 282/566 (49%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRNAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSVLAMRSLGCANIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ +++A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVEHARALGIAVIVTDHHLPGDTLPAAEAIINPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 197 YLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSILGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 437 LEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + +L R+V HL++ E L IAF V + + + + Sbjct: 497 EPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 +T L +N +RG++ Q+ + + P+ Sbjct: 552 LTYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|301300880|ref|ZP_07207052.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851479|gb|EFK79191.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus salivarius ACS-116-V-Col5a] Length = 777 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 193/579 (33%), Positives = 295/579 (50%), Gaps = 27/579 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + E + + ++ P IV ++L+ R + +FL+P R L DP Sbjct: 6 KEWQEIELSENEHL-DELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLY-DPNF 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + RI QAI N EKI+I+GDYDVDG S ALM L YIPDR DG Sbjct: 64 MHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEHYIPDRFKDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ I+EG LI+TVD G ++A+ YA G+DV+V DHH++ AYA+ Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + G L GV F V + L QD +LDLVAL TV D+V Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQD-----------VLDLVALGTVADLV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V GL + ++ PGL++L + I IT E +G+ + P +NA GR+ Sbjct: 233 SLTGENRILVKYGLQLLQQTMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRMEN 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LL + D + E LA + LN R+ + ++E+A A++ + + V VV Sbjct: 293 GSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKS---ENHLVNVV 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432 G+ WH G+VG++A+RL + G+PS +S +E G GSGRSIE F + + Sbjct: 350 AGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQM--FDALDSHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH MA GL++++ L + T PV K+ +N VN+ L Sbjct: 408 ILMKFGGHHMACGLSLDKEKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDVNLDL 466 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 LE+ P+G NP PVF F ++++ +++ + HL++ +S +S+ + A+ F + Sbjct: 467 EAQLEALAPFGTDNPRPVFEFKDYEVNAVQAIGQQKNHLKLQLQSNNSQ-VDALDFGIGS 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + E + + G L N W+ Q+ + D Sbjct: 526 KKISEIERNKN--SVRLIGTLGKNVWQSRVNLQIMIEDI 562 >gi|332534751|ref|ZP_08410579.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoalteromonas haloplanktis ANT/505] gi|332035838|gb|EGI72322.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoalteromonas haloplanktis ANT/505] Length = 573 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 178/564 (31%), Positives = 276/564 (48%), Gaps = 19/564 (3%) Query: 38 AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 + ++ ++ NRNV + D LN S+ L D + D DKA+ +++A+ +I+ Sbjct: 19 NLHPVIKQIYANRNVFNADE----LNNSVATLH-DFKLFKDIDKASDLLIEALKAQSQIL 73 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 I GD+D DGA S A +M+ L + IPDR GYG +P+L E+ + L+IT Sbjct: 74 IVGDFDADGATSTATLMQGLEMFGFKHLDYLIPDRFSLGYGLSPALAEQIVQIKPDLVIT 133 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G + + GI V+V DHH + A A+VNPNR + + GV Sbjct: 134 VDNGISCIAGIDILKAVGIKVLVTDHHLQGEQLPNADAIVNPNRHECSFPSKSIAGVGVA 193 Query: 216 FLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 F +L+ + ++R +L +LLD+VAL TV DVV L NR V +GL R Sbjct: 194 FYLLIALRSVMRDLGYFEQQPPPNLANLLDIVALGTVADVVALDANNRTLVHQGLARIRS 253 Query: 274 QG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG+ ALIE N + + ++A + G+ + P +NA GR+ + +LG L+S D + Sbjct: 254 GKTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSTDINQARS 313 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E M +A+A + I + D WH G++G+LA RL Sbjct: 314 IAGELDSLNFARREIEQGMQAEAQAVLDRLAFSDDNVPDAICLFQDDWHQGVIGILAGRL 373 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KEK+ RP+ + E+G+ GS RSIEG + ++ E ++ K GGHAMAAGL++ Sbjct: 374 KEKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTAEPHLINKFGGHAMAAGLSI 433 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 +F F + + DG L + +L+ +GP+G P Sbjct: 434 NEQHFNDFKKAFDAAVSAQLSEESKRCIVFTDGELPNDCFTMEFAQLLKQSGPWGQQFPE 493 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 PVF ++ R+V HL++ + Q + AIAF + + + K + V Sbjct: 494 PVFEHT-FEVIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPD----TEAKFVKVA 548 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG QL V + V Sbjct: 549 YQLDINEFRGKFTLQLIVRELEKV 572 >gi|329963057|ref|ZP_08300837.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fluxus YIT 12057] gi|328529098|gb|EGF56028.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroides fluxus YIT 12057] Length = 582 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 162/582 (27%), Positives = 270/582 (46%), Gaps = 22/582 (3%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W E + + I I+ R+LV R + + A+ F P + L DP + Sbjct: 15 KWNYQPITSEQAEISQQLALDLGISPILGRLLVERGIHTAADARKFFRPQLPDLY-DPFL 73 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A R+ +A+ E+I+I+GDYDVDG +VAL+ +F+ N + YIPDR +G Sbjct: 74 MKDMDVAVERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEG 133 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ G LII +DCG + D + YA +GID I+ DHH PA A+ Sbjct: 134 YGVSTKGVDYAAETGVGLIIVLDCGIKAVDEITYAKEKGIDFIICDHHVPDDTLPPAAAI 193 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N R D+ HL GV F + + L+ LLDLVA++ D+V Sbjct: 194 LNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIE-----FHHLIPLLDLVAVSIASDIV 248 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P++G NR GL + GLKA+I+ IT ++ + IGP INA GRI Sbjct: 249 PIMGENRILAYHGLKQLNSNPSVGLKAIIDVCGLTEKEITVSDIVFKIGPRINASGRIQN 308 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL D A +++ N+ R+ ++ +M E+A +++ + + + IV+ Sbjct: 309 GKEAVDLLTEKDFSLALEKASQINQYNETRKDLDKSMTEEA-NQIVADLEGLAERRSIVL 367 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL E + RP+ ++ +D GS RS+ GFD+ K + + Sbjct: 368 YNEDWHKGVIGIVASRLTEIYYRPAVVLTRTDD-MATGSARSVSGFDVYKAIEHC--RDL 424 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL+++ N + F+ F + T+ + I+ ++ + Sbjct: 425 LENFGGHTYAAGLSMKVENVPAFTERFENFVSEHILPEQTSALIDINAEIDFRDITPKFC 484 Query: 494 DMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVY 549 L+ P+G N P+F N + +VV H+++ + + + IAF Sbjct: 485 SDLKKFNPFGPDNVKPIFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQS 544 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + N + QL++ D P Sbjct: 545 ----SHVRFIKTKRSFDICYTIEENTHK-RGEVQLQIEDIKP 581 >gi|82778342|ref|YP_404691.1| ssDNA exonuclease RecJ [Shigella dysenteriae Sd197] gi|81242490|gb|ABB63200.1| ssDNA exonuclease, 5' --> 3' specific [Shigella dysenteriae Sd197] Length = 577 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 174/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG N ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLNLEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ +++A + GI VIV DHH A A++NPN + L GV F Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRNCNFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR +L LLDLVAL TV DVVPL NR +G+ R Sbjct: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 318 LANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRS++G + + G+++K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSVQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + +L R+V HL++ E L IAF V + + + + + Sbjct: 498 PLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ Q+ + + P+ Sbjct: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 >gi|262274921|ref|ZP_06052732.1| single-stranded-DNA-specific exonuclease RecJ [Grimontia hollisae CIP 101886] gi|262221484|gb|EEY72798.1| single-stranded-DNA-specific exonuclease RecJ [Grimontia hollisae CIP 101886] Length = 575 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 184/567 (32%), Positives = 285/567 (50%), Gaps = 21/567 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP ++ R+ NR ++ + L S R L+ + L ++A + A+ +I++ Sbjct: 18 SIPPLLQRIYANRGITSE---RELERSARGLL-NYSELYGIERAVALLAAAMAEGRRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + N + +P+R DGYG +P ++E+ +GA+LI+TV Sbjct: 74 VGDFDADGATSSALSVTAFRMMGCTNVDYLVPNRFDDGYGLSPEVVEQAAAKGAELIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A +GI V+V DHH A A+VNPN + L GV F Sbjct: 134 DNGVSSIEGVAAAKARGIQVVVTDHHLPGETLPDADAMVNPNLNECGFPSKSLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L LLDLVAL TV DVV L NR V +GLM R Sbjct: 194 YLMLALRAHLREIGWFAQRGMPEPNLAELLDLVALGTVADVVSLDTNNRILVHQGLMRIR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++ALIE N + + A + G+ +GP INA GR+ + + G LL+ + Q Sbjct: 254 AGKCRPGIQALIEVSNRNMATLVANDFGFALGPRINAAGRLDDMSFGIELLLCQNLQAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ+R+ +E M E+A A + + WH G++G+LA+ Sbjct: 314 QMASELDALNQSRKEIEQGMKEEAMAICERLQFGEGSSLPCGLALFQREWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+K+KF RP A + DG GS RSI G + + G++ K GGHAMAAGL Sbjct: 374 RIKDKFHRPVIAFADGGDGMIKGSARSIPGLHMRDTLDLMDTQNPGLIKKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+ +F R F + N + V DG L ++ + + + +ML S GP+G G Sbjct: 434 TIAEADFTRFSKLFDEAVRNTISEEELKGVLLSDGELLSNEITLDVAEMLRSGGPWGQGF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P+F KL ++V HL+M E + + AIAF + + + + Sbjct: 494 PEPLFDGK-FKLLHQKLVGGKHLKMMLEPVMGGQMVDAIAFNIDLRRWPD----PSVQMV 548 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592 + HL +N +RG++ QL V + V Sbjct: 549 ELAYHLDINEFRGNRAVQLMVEHMAAV 575 >gi|332308049|ref|YP_004435900.1| single-stranded-DNA-specific exonuclease RecJ [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175378|gb|AEE24632.1| single-stranded-DNA-specific exonuclease RecJ [Glaciecola agarilytica 4H-3-7+YE-5] Length = 572 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 174/565 (30%), Positives = 284/565 (50%), Gaps = 19/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +I + ++ R ++ + L S + L+ ++ A R + A+ S++I+I Sbjct: 17 SINPTLKQIYATRGITSEQQ---LERSAKALLHY-KDMSGVGDAVRILADALAQSKRIII 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL M L N + +P+R GYG +P +++ +GAQ+I+TV Sbjct: 73 VGDFDADGATSTALSMLALGMMGCKNHDYLVPNRFNFGYGLSPQIVDVAHEQGAQVIMTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + ++ A GI V++ DHH A A+VNPN+ + +L GV F Sbjct: 133 DNGIACFAGVERAKELGITVLITDHHLAAESLPIADAIVNPNQPNCSFMSKNLAGVGVAF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR + N +L LLD+VAL TV DVVPL NR V +GL+ R Sbjct: 193 YLMLALRAHLRGVDWFAQNDIDVPNLADLLDIVALGTVADVVPLDENNRILVHQGLLRIR 252 Query: 273 -RQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++ALIE +LG++IGP +NA GR+ + ++G L++D + + Sbjct: 253 SDKCRPGIQALIEVAGRDKRKMVASDLGFVIGPRLNAAGRLDDMSMGIECLLTDSDYKAK 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A++LD LN+ RR +E +M ++A + + Q + +V+ +H G++G+LA R Sbjct: 313 QIAVELDSLNRERREIEQSMQQEAVTALDSLQLSEQDMPHGLVLYQADFHQGVIGILAGR 372 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +KEK+ RP+ A + ++D GS RSI G I ++ G+++K GGHAMAAGL+ Sbjct: 373 IKEKYFRPTIAFAHQDDEIIKGSARSIPGVHIRDLLEELSTRYPGLIIKFGGHAMAAGLS 432 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F + A + DG L A A+ + +L+ AGP+G G P Sbjct: 433 IEMAKLEEFKKRFTQLAQEHLAGKPLAGELISDGELPAQALTLEFSQLLKDAGPWGQGFP 492 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F +L R+V HL+M + + AIAF V + K + + Sbjct: 493 EPLFDGQ-FELVEQRIVGHKHLKMMLRMPTGKLVDAIAFNVDTQVWP----NEQCKHVEL 547 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG Q V +P+ Sbjct: 548 AYKLDINEFRGRTSLQFLVEGLNPL 572 >gi|225677396|ref|ZP_03788363.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590540|gb|EEH11800.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 547 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 221/551 (40%), Positives = 322/551 (58%), Gaps = 13/551 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+ W + + L +TQ+ +P+I+AR+LV R V+I+ A DFL P IR L+ Sbjct: 7 KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D DKA RI+ AI N E + IFGDYDVDGA S AL+ R+L +++ +YIPD Sbjct: 65 PDPFHLLDMDKAVSRIIWAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYG N + + G L I+VDCG+ +Y ++ A G+D+IV+DHH + Sbjct: 125 RVDEGYGLNTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247 A A+VNPNRLD+ S +L A GV FL++V + + LR+ DL LLDLVAL Sbjct: 185 SAVAVVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDV+ + GLNRA V +GL V + N GL+ L + + I + LG+ IGP INA Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIGE++LG+RLL +DD +E +A+KL LN R+++E+ L +A A+ Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ WH GI+G++A+RLKE+F P+ IS +G G S RSI G DI V Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIDAAVLS 420 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A ++++GGGH+MAAG +++ L DFF + N + K D ++ A A Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N++L + L+ GP+G GNP P F K++ V+ + H++ D+ ++AIAFR Sbjct: 477 INLSLWNQLQRLGPFGVGNPEPRFIIQGAKIRKPEVIGVDHIKCFIAD-DNVMVRAIAFR 535 Query: 548 VYGTPLGEFLM 558 T LG + Sbjct: 536 SANTHLGSAIK 546 >gi|127511706|ref|YP_001092903.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella loihica PV-4] gi|126637001|gb|ABO22644.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella loihica PV-4] Length = 574 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 182/565 (32%), Positives = 288/565 (50%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + I+ +V +R ++D + L +R P L D DKAA I A+ + I+I Sbjct: 19 HLSPILKQVYASRGCTVDDCELALANLLR-----PNTLKDVDKAAAIIADAMAKQQSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L N + IP+R GYG +P +++ +GA+L+ITV Sbjct: 74 IGDFDADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVAQQKGAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH + A A+VNPN+L + GV F Sbjct: 134 DNGISSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFASKAIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMSALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNRILVDAGLKRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+ AL+E ++ I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 254 AGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMRAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ-CDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LN RR +E+ M ++A + + ++ + I + WH G++G+LA+R Sbjct: 314 RMASELDGLNAERRELETGMQQEALKSLESLSLNEAELPWGIALYQQDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ A G+++K GGHAMAAGL+ Sbjct: 374 IKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMIIKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + F R + + ++ T DG L+ + +N+AL L SAGP+G P Sbjct: 434 LRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARELRSAGPWGQNFP 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL-QAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F ++ R+V HL++ ES+ +T+ AIAF V T + +Q Sbjct: 494 EPIFDG-VFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDATIQYA----E 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 V L +N +RG++ QL V P Sbjct: 549 VAYKLDINEFRGNESLQLMVEQIEP 573 >gi|145633055|ref|ZP_01788787.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 3655] gi|144986281|gb|EDJ92860.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 3655] Length = 575 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 ++ + R+ + LLDLVAL TV DVVPL NR +GLM R + Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARHC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ I++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHIFNQTVADWFDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574 >gi|68249760|ref|YP_248872.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 86-028NP] gi|68057959|gb|AAX88212.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 86-028NP] Length = 575 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 169/565 (29%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHIKNTKE---LDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + + DG LN++ N+ ++++S G +G P P F Sbjct: 435 HFADFQHIFNQTVADWLDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQEFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574 >gi|332878127|ref|ZP_08445856.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683865|gb|EGJ56733.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 565 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 172/581 (29%), Positives = 278/581 (47%), Gaps = 23/581 (3%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 + W L + ++ + A +L R ++ D A F +PS+ L DP Sbjct: 2 NYIWEPKLL-PSEAIIEKLRRELHLSQTTATLLAQRGITTYDEAMHFFSPSLASLH-DPF 59 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D KA R+ +AI EKI+I+GDYDVDG ++V+L+ R+LS+ + YIPDR + Sbjct: 60 LMKDMHKAVARLSKAINTQEKILIYGDYDVDGTSAVSLLYRYLSNHTSLLYTYIPDRYTE 119 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ ++G LII +DCG + D +QYAT++GID I+ DHH+ ++ A A Sbjct: 120 GYGISFQGIDYAASKGCSLIIALDCGIKAIDKVQYATDKGIDFIIGDHHRPDAQVPDAVA 179 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP + D LC G+ F ++ + L ++ LLDLVA+AT D+ Sbjct: 180 ILNPQQADCPYPYKELCGCGIGFKLVQAYQQHL-----SRPFEEIRPLLDLVAIATAADI 234 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 V + G NR GL V +Q + G+ AL + ++ + P INA GRI Sbjct: 235 VAMNGENRTLTYFGLEVINQQPSAGVDAL--LGENQKRVGIGDVVFKAAPRINAAGRIEH 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL DS + + A ++++LN R+ ++S++ ++A A++ + + Q VV Sbjct: 293 GKYAVALLTETDSHKAKEKAYEIELLNSERKELDSSITQEALAQI--EENGEQNRYSTVV 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RL E + RP+ + D K S RSI GFDI + E Sbjct: 351 FNPHWHKGVIGIVASRLIETYYRPTLVFTQSGD-KYAASARSITGFDIYDALEQCSEY-- 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT+ + + F++ + L P D L S + LI Sbjct: 408 LEQFGGHTYAAGLTLLPEQYPDFKEAFEQVVVQKLANLPRDPKICYDTQLPLSKITEKLI 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDS-ETLQAIAFRVY 549 +L+ P+G N P+F N + + HL++ A+AF + Sbjct: 468 GVLKRFEPFGPNNLPPLFYADNVIDTGFAKAIGKDEKHLKLNLREVGCPHYFGAVAFDLA 527 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G+ + + N W G R QLR+ D Sbjct: 528 DR----LPIVESGRPFSIIYSIEENIWNGIIRPQLRIHDIK 564 >gi|225010278|ref|ZP_03700750.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria bacterium MS024-3C] gi|225005757|gb|EEG43707.1| single-stranded-DNA-specific exonuclease RecJ [Flavobacteria bacterium MS024-3C] Length = 566 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 167/582 (28%), Positives = 272/582 (46%), Gaps = 21/582 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 W+ + + R +++ I ++++R+L+ R VS + AK F P + L PL++ Sbjct: 2 NWIEIPLRA-PERIKELSESLGISNVLSRLLIQRGVSDFNAAKTFFRPEMSQLH-SPLLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A RI+ A+ E I+++GDYDVDG +VAL+ +L YIPDR +GY Sbjct: 60 KDMALAVARIILAMEREEAILVYGDYDVDGTTAVALVADYLQQYYHKVATYIPDRYEEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ LII +DCG + D + YA +GID I+ DHH A A++ Sbjct: 120 GVSYQGIDFASENDIGLIIALDCGVKAIDKVVYAKEKGIDFIICDHHTPGPILPDAVAVL 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D LC G+ F ++ I L + LDLVA A D+VP Sbjct: 180 DPKRSDCNYPYKELCGCGIGFKLIQAISMALEASE-----EVVYPYLDLVATAIGADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L G NR GL+ PG KA +E +T +L + + P INA GR+ Sbjct: 235 LDGENRTLAFLGLLQINSHPRPGFKAFLENFK-KPVVTLTDLNFTVSPRINAAGRMVHGA 293 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL + D + + +A ++ N RR ++ + + A ++ + VV Sbjct: 294 HAVALLQTKDMAQAKQMAAAIEDNNTERRSLDQYITDNALKQIAGDL--ETTNATTVVYQ 351 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A+RL E RP+ + GS RSI+G+D+ K + E L+ Sbjct: 352 PDWHKGVIGIVASRLIETHYRPTLVFTKSGH-VLAGSARSIKGYDVYKAIEACSEH--LI 408 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLT+ + + F+ + + + + P ID L+ S ++ I + Sbjct: 409 QFGGHMYAAGLTLAPEKYDDFKNAFESYVSTTLDSALKIPQINIDSPLSFSEISPKFIRI 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQ-SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G NP PVF +V+ HL+ T + + +AF+ Sbjct: 469 LKQMAPFGPENPIPVFKATGVYDTGYAKVIGADQTHLKGTLTQDGATKINFVAFKKADA- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + S K++ + ++ N+W+G QL++LD P EG Sbjct: 528 ---LALLSHQKKVDIVFNISENFWQGQTTIQLQLLDIKPHEG 566 >gi|50119717|ref|YP_048884.1| ssDNA exonuclease RecJ [Pectobacterium atrosepticum SCRI1043] gi|49610243|emb|CAG73686.1| single-stranded DNA-specific exonuclease [Pectobacterium atrosepticum SCRI1043] Length = 581 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 183/568 (32%), Positives = 276/568 (48%), Gaps = 24/568 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V L + L+ + +L+ DKA + A+ I+I Sbjct: 22 VPPLLRRLYAQRGVKGAQE---LERGLNGLL-NYRLLSGIDKAIDLLQLALAEKRCIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S L + L N +P+R DGYG +P+++ + GA++I+TVD Sbjct: 78 GDFDADGATSTTLAVLALRSMGGENVKYLVPNRFEDGYGLSPAVVAQAATLGAEVIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEDAHRRGIAVLVTDHHLPGEILPDADAMINPNLPDCQFPSKALAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ ++ LR + +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LMMALFVRLRDSDWFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGLNRIRA 257 Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG++AL+E N S + A +LG+ IGP +NA GR+ + +G LL+S+D + M Sbjct: 258 GECRPGIRALLEVANRDASQLVASDLGFAIGPRLNAAGRLDDMTVGVELLLSNDITQARM 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA LD LNQ+RR +E M +A + + + + + WH G+VG+LA+R+ Sbjct: 318 LANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE+F RP A + DG GSGRSI G + + G++ K GGHAMAAGL++ Sbjct: 378 KERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMAAGLSL 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPYGAGNP 507 F F + + V DG L +N ++ +ML AGP+G P Sbjct: 438 HEDRFEDFRQRFGELVGEWIDPSQLEGVVWSDGELALPELNLLSTAEMLRYAGPWGQEFP 497 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLMQSRGK 563 P F ++ R++ HL+ FE + L IAF V T + K Sbjct: 498 EPTFDGC-FRIIKPRLLKERHLKAMFEPIGATGPVPLLDGIAFNVDTTVWPD----PSIK 552 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + L +N +RG + QL + P Sbjct: 553 EVEMVYRLDINEFRGKRSVQLLIQHLWP 580 >gi|149192201|ref|ZP_01870418.1| ssDNA exonuclease RecJ [Vibrio shilonii AK1] gi|148833959|gb|EDL50979.1| ssDNA exonuclease RecJ [Vibrio shilonii AK1] Length = 579 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 177/570 (31%), Positives = 283/570 (49%), Gaps = 25/570 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP ++ R+ ++R V+ L + R L+ L D A + +AI ++I++ Sbjct: 18 SIPSLLRRLYLSRGVTD---VAQLEKTARGLISY-QQLAGIDAAVALLFEAIKQQKRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L N + +P+R DGYG +P ++++ I GA++I+TV Sbjct: 74 VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIEIGAEVIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S +QYA + G+ V+V DHH +E A+VNPN + L GV F Sbjct: 134 DNGVSSISGVQYAKDNGLQVLVTDHHLPGAELPNVDAMVNPNLNECGFPSKALAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +R+ L+ L+DLVAL TV DVVPL NR V +GL R Sbjct: 194 YLMMALCVFMRKQGWFAKQGMAEPKLMELIDLVALGTVADVVPLDENNRILVHQGLQRIR 253 Query: 273 RQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG++ALIE + A + G+ +GP INA GR+ + + G LL+SD+ Sbjct: 254 AGKARPGIQALIEIAKRDARKLVASDFGFALGPRINAAGRLDDMSFGVELLMSDNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M ++A A D + + + WH G++G+LA+ Sbjct: 314 RMASELDGLNQTRKDIEEGMKQEALAFCERLQISDKSELPYGLALFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+K+KF RP A + +G GS RSI+G + + G+++K GGHAMAAGL Sbjct: 374 RIKDKFHRPVIAFADGGEGTIKGSCRSIQGLHMRDALDRIDTQNPGLILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+ ++ R F + + + DG L ++ + L + GP+G Sbjct: 434 TIMEKDYERFSKLFDEVVRAELGDTALKGIILSDGELTPEEFSMHTAEQLRAGGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P+P+F K+ ++V HL++ E + L AIAF V + + Sbjct: 494 PDPLFDGE-FKVLHQKLVGEKHLKLMVEPMHKGFGTNIMLDAIAFNVDLRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K + + L +N +RG++ QL V P Sbjct: 549 VKTVTLAYKLDINEFRGNQSLQLMVDHIEP 578 >gi|291514813|emb|CBK64023.1| exonuclease RecJ [Alistipes shahii WAL 8301] Length = 569 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 176/579 (30%), Positives = 278/579 (48%), Gaps = 33/579 (5%) Query: 33 ITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + I ++A +LV R + + A+ F PS+ L DP ++ D +KA R+ QA+ N Sbjct: 2 LAAALRISPVLANLLVQRGIDTVEKAEKFFKPSLADLH-DPFLMKDMEKAVERVEQAVAN 60 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGA 150 EKIM++GDYDVDG +VAL+ +FL N YIPDR +GYG + ++ +G Sbjct: 61 QEKIMVYGDYDVDGCTAVALVYKFLRQIGHKNLMFYIPDRYTEGYGISIKGIDLAARKGV 120 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 LII +DCG + + + YA +G+D I+ DHH E A A+++P R+D L Sbjct: 121 GLIIALDCGIKATEKVVYAKTKGVDFIICDHHLPAEEIPKAVAVLDPKRVDCSYPFDELS 180 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 GV F ++ + R +L LLDL+ ++ D+VPL+G NR GL Sbjct: 181 GCGVGFKLVQAYAQKNRM-----PFEQILPLLDLLVVSIASDIVPLVGENRILAYFGLKN 235 Query: 271 ARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL-----------GS 318 R+ + GL ++I+ IT +++ + IGP INA GR+ Sbjct: 236 LNREPSKGLLSIIKICGLDKHNITIDDIVFKIGPRINAAGRMRMDENDENASPSGGHAAV 295 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 LLI + E +D NQ+R+ ++ ++ ++A + +++ V+ RW Sbjct: 296 ELLIEGNESIAEEFGSVIDAYNQDRKSIDRSVTQEAHDYIEGN-PEMKALKSTVIYNPRW 354 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 GIVG++A+RL E + RP+ ++ +G GS RS+ GFD+ + V +L G Sbjct: 355 MKGIVGIVASRLIETYYRPTVVLT-MSNGFVTGSARSVPGFDLYQAVESC--SDLLENFG 411 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH AAGLT+ N G F + + + P ID L S + A L Sbjct: 412 GHMYAAGLTMRPENVGEFTRRFNAYVEENIDPQMLVPQVDIDSELLFSDITPAFRKDLNR 471 Query: 499 AGPYGAGNPNPVFAFPNHK-LQSIRVVNL--AHLQMTF--ESQDSETLQAIAFRVYGTPL 553 P+G GN PVFA ++V + HL+M + + +QAIAF+ Sbjct: 472 FQPFGPGNTAPVFATCGVSNHGDAKLVGMECEHLRMDLMQRQKPNTKIQAIAFQQPT--- 528 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + G+ + V + N++RG+ QLR+ D PV Sbjct: 529 -HYEWVRSGRPIDVCYQIVENHYRGTVTTQLRIKDIKPV 566 >gi|260582143|ref|ZP_05849937.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae NT127] gi|260094775|gb|EEW78669.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae NT127] Length = 575 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIVALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFDDFQHIFNQTVADWFDEEHMQSIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574 >gi|194468449|ref|ZP_03074435.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri 100-23] gi|194453302|gb|EDX42200.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri 100-23] Length = 775 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 161/578 (27%), Positives = 271/578 (46%), Gaps = 21/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 F+W + ++ I I+A +L + + + AK F PS+ + DP + Sbjct: 6 FKWKL-ADNASSATVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIH-DPTL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QA+ E+I I+GDYD DG S +LM L N N Y+P+R DG Sbjct: 64 LHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSVGANVNYYVPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN ++ I+ G QL ITVD G + + + G+DV++ DHH++ ++ A A+ Sbjct: 124 YGPNMDAYQRLIDNGTQLFITVDNGVSGKNVIDKVMAAGVDVVITDHHELPADLPNAVAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P L GV F V + + LDLVA+ + DVV Sbjct: 184 VHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPIEE-----------LDLVAIGEIADVV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 + N A + G+ R+ PGL AL+E +I + +T +++G+ I P +NA GRI + Sbjct: 233 NVTDENHALISYGIQQLRQGMRPGLAALMELADIKANNLTDQDIGFGIAPRLNALGRIAD 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N G +LL S D E + LA ++D N+ R+ + + ++++AE + QQ +++ Sbjct: 293 ANDGVKLLTSLDENESQKLAKEVDQANKERQNLVAEIMKEAEKQA--NSSANQQKKTLLI 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++A+R+ + G+P+ S +++ + G + + Sbjct: 351 VGKGWHQGVLGIVASRIMNETGKPTIVASTDQNNPTLIKGSGRSVDSFNLFNALEAHREL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 GGH A GL+ ++ N L ++ A+ I L + V L Sbjct: 411 FTTFGGHPAACGLSFDQGNIAPLQIALEEEANQQKFDPTVKQTLPIAMQLEPADVTQQLY 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTP 552 + ++ P+G GN PVF N K+ ++ + H + F + L +AF Sbjct: 471 NDIQRVAPFGPGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSGKENLTVVAFGQGNLA 530 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L+ + ++++ + +N WRG K QL + D Sbjct: 531 ---TLLSAPTGQVNLAVKVSLNEWRGKKSVQLMLEDLQ 565 >gi|315127591|ref|YP_004069594.1| single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Pseudoalteromonas sp. SM9913] gi|315016105|gb|ADT69443.1| single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Pseudoalteromonas sp. SM9913] Length = 573 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 177/563 (31%), Positives = 280/563 (49%), Gaps = 17/563 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ RNVS LN S L D + D DKA++ +++A++ KI+I Sbjct: 19 HLHPVIKQIYATRNVSHADE---LNNSAATLH-DFKLFKDIDKASQLLIEALHAQSKILI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S A +M+ L+ + + +PDR GYG +P+L E+ + L+ITV Sbjct: 75 VGDFDADGATSTATLMQGLAMFGFTHLDYLVPDRFSLGYGLSPALAEQIVTMQPDLVITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + GI V+V DHH + A A+VNPNR D + GV F Sbjct: 135 DNGISCIAGIDIVKAAGIKVLVTDHHLQGEQLPNADAIVNPNRHDCDFPSKSIAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFD--LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 +L+ + LR+ + + LLD+VAL TV DVV L NR V +GL R Sbjct: 195 YLLIALRSALREQGYFNQHPMPNIADLLDIVALGTVADVVALDANNRTLVHQGLARIRSG 254 Query: 275 G-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG+ ALIE N + + ++A + G+ + P +NA GR+ + +LG L+S+D + + Sbjct: 255 KTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSNDINQARRI 314 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLK 391 A +LD LN RR +E M +A+A + I + D WH G++G+LA RLK Sbjct: 315 AGELDSLNFARREIEQGMQVEAQAVLDRLAFKEDSVPDAICLYQDDWHQGVIGILAGRLK 374 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 EK+ RP+ + E+G+ GS RSIEG + ++ + G++ K GGHAMAAGL++ Sbjct: 375 EKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTAQPGLINKFGGHAMAAGLSIN 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 +F F + + DG L ++ +L+ +GP+G P P Sbjct: 435 EQHFTEFKRAFDSAVSAQLSEESKRCIVFTDGELPNDCFSMDFAQLLKQSGPWGQQFPEP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 +F +L R+V HL++ + Q + + AIAF + + + + + V Sbjct: 495 IFEHT-FELIQQRIVGEKHLKLVLKHQSARLVDAIAFGIDVKAWPD----TEAQFVKVAY 549 Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG QL V + V Sbjct: 550 QLDINEFRGKFSLQLIVRELEKV 572 >gi|238921198|ref|YP_002934713.1| ssDNA exonuclease RecJ [Edwardsiella ictaluri 93-146] gi|238870767|gb|ACR70478.1| single-stranded-DNA-specific exonuclease RecJ, putative [Edwardsiella ictaluri 93-146] Length = 575 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 181/565 (32%), Positives = 275/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP ++ R+ NR V L ++ L+ L ++A + +A+ +++I Sbjct: 19 GIPPLLRRLYGNRGVCSA---AELERGVKGLLSY-QQLNGIERAVVLLQEALAQRLRLVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + +P+R DGYG +P ++E+ GA+LI+TV Sbjct: 75 VGDFDADGATSTALSVLALRAMGCDSVQHLVPNRFEDGYGLSPEVVEQAATMGAELIMTV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A +GI V+V DHH A A+VNPN D L GV F Sbjct: 135 DNGVSSHAGVEAAHARGIRVLVTDHHLPGETLPAAEAIVNPNLADCDFPSKSLAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + R L +L LLDLVAL TV DVV L NR V +GL R Sbjct: 195 YLMLALRRHLVDQGWFERLGRPAPNLADLLDLVALGTVADVVRLDTNNRILVYQGLSRIR 254 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E +TA +LG+ +GP +NA GR+ + +LG LL+SDD + Sbjct: 255 AGRCRPGIRALLEVAKRDAPRLTASDLGFALGPRLNAAGRLDDMSLGVALLLSDDMPQAR 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAE-AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA LD LNQ RR +E M +A + Q + + WH G+VG+LA+R Sbjct: 315 ALASDLDALNQTRREIEQGMQSEALAICAGLERTLTQLPYGLALYHPEWHQGVVGILASR 374 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +KE+F RP A + +G GSGRS+ G + + G++ K GGHAMAAGLT Sbjct: 375 IKERFYRPVIAFAPAGEGLLKGSGRSLPGLHMRDALERLDMQHPGLMQKFGGHAMAAGLT 434 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + V DG L++ + + + ++L GP+G G P Sbjct: 435 IEAARFDDFRHHFDTLVGEWLDPAQLEGVVWSDGALSSDELTLPVAELLRDGGPWGQGFP 494 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F ++ R+V HL++ E L IAF V T + + + + Sbjct: 495 EPTFDGQ-FRILQQRLVGERHLKLMLEPLGGGPLLDGIAFNVDTTLWPD----ASVREVE 549 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL + P Sbjct: 550 LAYRLDINEYRGNRSVQLMIQHLWP 574 >gi|238926104|ref|ZP_04657864.1| possible single-stranded-DNA-specific exonuclease RecJ [Selenomonas flueggei ATCC 43531] gi|238885994|gb|EEQ49632.1| possible single-stranded-DNA-specific exonuclease RecJ [Selenomonas flueggei ATCC 43531] Length = 671 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 172/597 (28%), Positives = 292/597 (48%), Gaps = 34/597 (5%) Query: 17 RWVSLLGQEGINRA--------LAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRL 67 RW A+ + + I+ ++L R + + + A+ FL+P+ Sbjct: 2 RWEEEEKNVLKEWIVAQHTDEGDALAAEIGVTPIIGQLLWQRGIRTAEEARAFLHPA-DT 60 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 DP ++ D ++ A R++ A+ E I+I+GDYDVDG + AL+MR + N + YI Sbjct: 61 PFHDPFLMADMERGAERVLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLGGNVSYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG N +++ EG +L++TVDCG S D + AT G+D+++ DHH Sbjct: 121 PNRFTEGYGLNADALQQIAGEGCRLLVTVDCGIASVDTVAEATG-GMDIVITDHHLPGQM 179 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 AYA++NP+R D + +L GV F ++ ++++ R+++ LD+ AL Sbjct: 180 LPSAYAVMNPHRADCAYPEKNLAGVGVAFKLVQALWQMEREESF-------AEYLDIAAL 232 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306 TV D+VPL+G NR V GL G++ALIE I +G+ + P +N Sbjct: 233 GTVADLVPLVGENRKIVQMGLRQMAEHPCVGIRALIEVAGLADKSINTGQVGFQLAPRLN 292 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + G+ LL+++D+ +A +L+ LN RR +E +L +AE ++ D+ Sbjct: 293 AAGRLETARHGAELLLTEDTACASRMAGELNALNTERRDLEQDILAEAERQLADFTPDV- 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 IVV G+ W+ G++G++A+RL EK+ RPS ++ +D GS RSI G + + +S Sbjct: 352 --PAIVVAGEEWNAGVIGIVASRLVEKYYRPSIVLTRRDD-VYKGSCRSIAGLHLYEALS 408 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 L++ GGHAMAAGLT+ F + + A P + + + Sbjct: 409 AC--RDTLIQFGGHAMAAGLTLSCERLSDFRRAFSEAVRTRLTAQDFIPKVAVSALAAPA 466 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI 544 + ++ L PYG GNP P+F N + Q + HL+M +++ + A+ Sbjct: 467 DWTVETVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDIGTREHH-ITAL 525 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH-HFAKK 600 + L L + + +N W+G + Q V +P F ++ Sbjct: 526 YWNAGD--LATVLTEEDS---DLAYTPSINEWQGERSVQCMVDTVTPAAHERIFPER 577 >gi|329124055|ref|ZP_08252602.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus aegyptius ATCC 11116] gi|327467480|gb|EGF12978.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus aegyptius ATCC 11116] Length = 575 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 283/565 (50%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ ++ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHIKNTKE---VDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 ++ + R+ + LLDLVAL TV DVVPL NR +GLM R + Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARHC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDELNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ I++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + + + DG LN++ N+ ++++S G +G G P P F Sbjct: 435 YFADFQHLFNQTIADWLDEEHLQGIIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E QD L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQDGGLLDAIAFNIDTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574 >gi|309973323|gb|ADO96524.1| Single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae R2846] Length = 575 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 168/565 (29%), Positives = 281/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L ++A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQKQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R + Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHIFNQTVADWLNEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSLQLLVDYIEPID 574 >gi|1373410|gb|AAB02261.1| RecJ [Erwinia chrysanthemi] Length = 575 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 182/565 (32%), Positives = 276/565 (48%), Gaps = 19/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++P ++ R+ R V L S+R L+ D +L +A + QA+ ++ +I+I Sbjct: 20 SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGITQAVEVLRQALADNRRIVI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D D A S AL + L + +P+R DGYG +P ++ + +GA+LI+TV Sbjct: 76 VGDFDADRATSTALTVLALRSMAAREVQYLVPNRFEDGYGLSPEVVAQAPAKGAELIVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A +GI V+V DHH A A++NPN D L GV F Sbjct: 136 DNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L LLDLVAL TV DVVPL NR + +GL R Sbjct: 196 YLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIR 255 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++AL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ + Sbjct: 256 AGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCKHIVQAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 MLA LD LNQ+RR +E+ M +A + + + +WH G+VG+LA+R Sbjct: 316 MLASDLDALNQSRREIEAGMQVEALHLCEQLERTRDTLPLGLAMYHPQWHQGVVGILASR 375 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV-KGGGHAMAAGLTV 448 +KE+F RP A + DG GSGRSI G + + L+ K GGHAMAAGL++ Sbjct: 376 IKERFHRPVIAFAPAGDGILKGSGRSIAGLHLHALERLDTCHPGLMLKFGGHAMAAGLSL 435 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 F F + A V DG L + V + +ML AGP+G P Sbjct: 436 VEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPDVTLGTAEMLREAGPWGQAFPE 495 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F +L R+V HL++ E L IAF V + S + + + Sbjct: 496 PTFDGR-FRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPD----SSVREVEL 550 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L VN +RG + QL + P+ Sbjct: 551 AYKLDVNEFRGKRSVQLLIEHLWPL 575 >gi|227509463|ref|ZP_03939512.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191175|gb|EEI71242.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 776 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 186/585 (31%), Positives = 281/585 (48%), Gaps = 28/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S F+W + A+++ I ++A +L+ R VS + A +DFL PS + DP Sbjct: 4 SKFKWQIR-QNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D K RI A+ N E+I ++GDYD DG S +M L+ N + YIP+R Sbjct: 62 YLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRFS 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN EK IN G LIITVD G +A+ A + DV+V DHH + AY Sbjct: 122 DGYGPNVDAFEKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAY 181 Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A+++P N+ G L AGV V + L D +D+ A+ T Sbjct: 182 AIIHPRVKNQEGRAYPFGDLSGAGVALKVAQALMEDLPID-----------FIDVAAIGT 230 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308 V D+V L NRA V GL R PGL ALI+ +I S +++G+ I P +N+ Sbjct: 231 VADIVSLKDENRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSL 290 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRI ++N+G LL + D Q+ LA D N +R+ + +QA V + D + Sbjct: 291 GRIDDANIGVELLSTFDDQKATELAKFADHQNDSRKSLVDEFYQQAVQMVES-SGDAENR 349 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF 427 S +VV GD WH G++G++A++L EK+GRP+ ++ ++ GSGRS+E FD+ + Sbjct: 350 STLVVVGDDWHQGVLGIVASKLVEKYGRPTIVLTSQDGNDQVKGSGRSVESFDL--FSAI 407 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + GGH A GLT+ + L D +K A + L P I ++A Sbjct: 408 DPIRDQTIGFGGHHSAVGLTINKDKISVLKDQLEKAAEDQELDLSQKPTLDIAAKISADQ 467 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545 ++ I L P+G NP PVF +L ++ + HL+ + ++ L A+A Sbjct: 468 IDNQFIKNLNVLAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLV-KNKSRLTAVA 526 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + + + V+G + N W QL V D Sbjct: 527 FGQGAAAGQ---LSNGSASIKVSGEINENTWNNHTTIQLMVSDLK 568 >gi|253578287|ref|ZP_04855559.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850605|gb|EES78563.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 570 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 282/584 (48%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +WV + N+ I Q+ I ++AR++ NR+ + D +++L+ +++ L P P ++ Sbjct: 3 KWVIAAKRADFNQ---IGQQFHIDPVIARLIRNRDVIGEDKIREYLSGTVQEL-PSPWLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA + + I K+ I GDYD+DG S ++M+ L+ + + YIPDR+ DGY Sbjct: 59 KDMEKAVDILEKKISQKAKVRIIGDYDIDGVTSTYILMKGLARIGADVDTYIPDRVADGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + L+E+ + I+T D G + +Q A ++G+ VI+ DHH+V E Sbjct: 119 GIHAHLIERAETDRIDTIVTCDNGIAAAAEIQMAKDKGMTVIITDHHEVPYREEKGERQM 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A++NP + D +LC A V F + +Y +L +L A Sbjct: 179 VLPPADAILNPKQYDCPYPNKNLCGAVVAFKYIAALYERFGV-----PAEELEDYYELAA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 +ATV DV+ L G NR V +GL + N GL+ LI + + ITA ++G+++GP I Sbjct: 234 IATVGDVMDLQGENRILVKEGLCRLKNTKNQGLQELIRANSLEDAKITAYHIGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + +E LA L LNQ+R+ + E+A + + ++ Sbjct: 294 NASGRLDTAARSLALLNAKTKEEAARLAGDLTALNQSRKALTEKGKEEAIRII--ETTEL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+VV H + G++A R++EK+ RP+F ++ E GSGRSIE + + Sbjct: 352 KNDRVLVVYLPDCHESLAGIIAGRIREKYHRPAFVLTGGETS-AKGSGRSIESYSMY--E 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 ++++ GGH MAAGL++E N + + P ID + Sbjct: 409 ELVKCADLMIQFGGHPMAAGLSIEEKNIEEFRRRLN--VNCTLTDEELRPKIVIDVPMPV 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 S + L++ + P+G GN PVFA N ++ ++ +++ +++ Sbjct: 467 SYITKELVEQISLLEPFGKGNTKPVFAQKNLRVLDHSIIGKNKNVVKLKLLDPQGISVEG 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 I F + + VT + +N +RG + Q+ + Sbjct: 527 IYFGEAEDFVN---FIREKDSISVTYYPEINRFRGRESLQIIIQ 567 >gi|301066602|ref|YP_003788625.1| single-stranded DNA-specific exonuclease [Lactobacillus casei str. Zhang] gi|300439009|gb|ADK18775.1| Single-stranded DNA-specific exonuclease [Lactobacillus casei str. Zhang] Length = 764 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 285/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 + ++W Q A A+++ +P +A +L+ R ++ + F++P L DP Sbjct: 2 TQYQWQLAP-QPAAADAHALSETLGVPPFLATLLLQRGINDQADYEAFVHPDTSRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI +EKI I+GDYDVDG S A+M+ L + +++IPDR Sbjct: 60 FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G + A G+DV+V DHH++ ++ A Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + + + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E G+P+ ++ +DG+ GSGRSIE + + K + A E Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +V GGH MA GLT + + + + A ++ + P I L + + + Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPIATRLEDADLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 ++ P+G GNP PVF+ +Q+++ + HL+ + + I F Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQAIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + + L N W+G+ QL + D + + Sbjct: 520 GDA----AETLATAQTVKLAVQLDQNTWQGNTSLQLMLKDYEVKQPQVIDWR 567 >gi|304311877|ref|YP_003811475.1| Single-stranded DNA-specific exonuclease [gamma proteobacterium HdN1] gi|301797610|emb|CBL45831.1| Single-stranded DNA-specific exonuclease [gamma proteobacterium HdN1] Length = 576 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 175/583 (30%), Positives = 284/583 (48%), Gaps = 22/583 (3%) Query: 23 GQEGINRALAITQKHA--IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 + R I + I ++ R+ R + D ++ ++ L+P P L + Sbjct: 2 QKNISRRVSKIPAAFSDQIHPLLQRIYAARGILSD---AEVDRALSRLLP-PDRLKGLPE 57 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNP 139 A +V A+ N + I+I GD+D DGA S L + L + +PDR GYG P Sbjct: 58 ALALLVAALQNDQSILIVGDFDADGATSSVLAVLALRAMGAQRVDYLVPDRFRYGYGLTP 117 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 +++E L+ITVD G +S + + A G+ V+V DHH ++ A A+VNPN+ Sbjct: 118 AIVEVAQQRAPDLLITVDNGISSVEGVAAARRLGMRVLVTDHHLPGAQLPEADAIVNPNQ 177 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVP 255 L GV+F V+ + LR+ ++ LDLVAL TV DVVP Sbjct: 178 PGCEFPSKALAGVGVIFYVMSALRSRLRELGWFAERGFVEPRMVEFLDLVALGTVADVVP 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L NR V GL R P ++AL E + S + A +LG+ IGP +NA GR+ + Sbjct: 238 LDANNRLLVHHGLQRIRAGNCRPAIRALAEIGKRNLSQLVAADLGFAIGPRLNAAGRLDD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372 + G L+++ + LA +L++LN RR +E+ M ++A++ + + + + Sbjct: 298 MSHGIECLLAEQESSAKALAEELNLLNAERREIEAGMQQEAQSALQQLALNTRELPFGLC 357 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G+LA+R+KE++ RP A + ++G+ GS RS++G I ++ Sbjct: 358 LYNASWHQGVIGILASRIKERYHRPVIAFAKADNGEIKGSARSVQGVHIRDVLDAVASRH 417 Query: 433 I--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + + GGHAMAAGL+++ +F F + V + DG L + +++ Sbjct: 418 PELISRFGGHAMAAGLSLQPEHFDAFRAAFDAEVRRWLTVEDLVGVIQSDGELAPAEIDL 477 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVY 549 L D+L +AGP+G G P P+F +L +++ HL+MT Q + L AIAF V Sbjct: 478 PLADLLRNAGPWGQGFPEPLFDGC-FELLEQKLLKEKHLKMTLGLQGTNRVLDAIAFNVD 536 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + K + + L VN +RG +R QL V D P Sbjct: 537 ----LQCWPNQNAKSVRLAYRLDVNEFRGVRRAQLLVEDLQPA 575 >gi|309751143|gb|ADO81127.1| Single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae R2866] Length = 575 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 168/565 (29%), Positives = 281/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L ++A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R + Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQSDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSVQLLVDYIEPID 574 >gi|160942051|ref|ZP_02089366.1| hypothetical protein CLOBOL_06939 [Clostridium bolteae ATCC BAA-613] gi|158434942|gb|EDP12709.1| hypothetical protein CLOBOL_06939 [Clostridium bolteae ATCC BAA-613] Length = 576 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 172/588 (29%), Positives = 283/588 (48%), Gaps = 32/588 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW+ + +R I +++ I + AR++ NR + ++ +L S+ L DP +L Sbjct: 5 RWMLYAKKADFDR---IAEQYHISPVTARIIRNRGLEDMEDIGRYLYGSVEQLH-DPHLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+A + + +I I GDYD+DG S L+ R L + IPDRI DGY Sbjct: 61 PDMDRAVEILGEKAAEGRRIRIVGDYDIDGVCSTYLLYRALKRIGAEVDYEIPDRIKDGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----------QVK 185 G N ++E +G I+T D G + + A G+ V+V DHH + + Sbjct: 121 GINELIIEAAAEDGIDTILTCDNGIAAISQIARAKELGMTVVVTDHHDILTEAGETPEGR 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA A+VNP R D L +C V + ++ ++Y + R + LSLL++ Sbjct: 181 EILPPADAVVNPKRRDSLYPFPDICGGMVAYKLVQVLYEVHRV-----PREEWLSLLEIA 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATV DV+ L G NR V +GL N GL+ LIE+ N + ITA ++G++IGP Sbjct: 236 AIATVGDVMKLQGENRILVKEGLSRLGHTSNLGLRKLIEKNNLQAGTITAYHIGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GR+ + + LL+ +D E + +A +L LN R+ M +EQA A V + Sbjct: 296 LNASGRLQTAKIALGLLLCEDEGEADRMAEELKALNDQRKDMTQEGIEQAAAMVDELYRE 355 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V+VV H + G++A RL+E++ +PS+ ++ E G GSGRSIE + + Sbjct: 356 DK---VLVVFLPDCHESLAGIVAGRLRERYNKPSYVLTRAE-GCVKGSGRSIEAYHM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 S + +L+K GGH MAAG ++E + + A + P ID + Sbjct: 410 QSLVEVQDLLLKFGGHPMAAGFSLEEKDVDEFRRRLNENARERLTEEDFIPKVWIDVAMP 469 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 + I+ LE PYG GN P FA ++S RV+ ++++ + + Sbjct: 470 FEYITEPFIEELELLEPYGQGNEKPQFAQKGLFVRSARVMGRNRNVVRISLVNDRGTAMD 529 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + F + E + + M + + +N + G++ Q+ V + Sbjct: 530 GVIFTDGDLFMEE---KGDCRVMDIIYYPGINEYNGNRNLQIVVKNWK 574 >gi|54297372|ref|YP_123741.1| single-stranded-DNA-specific exonuclease RecJ [Legionella pneumophila str. Paris] gi|53751157|emb|CAH12568.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella pneumophila str. Paris] Length = 579 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 180/570 (31%), Positives = 279/570 (48%), Gaps = 23/570 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ V R +S + L+ ++ L+P L ++A R+ A+ + ++I+I Sbjct: 17 NVPDVLKRIYVTRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R GYG P+++E LIITV Sbjct: 73 IGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S++ + A GIDV++ DHH A A+VNPN+ L + GV+F Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + R L N ++ S LDLVAL TV DVV L NR V +G+M R Sbjct: 193 YVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + Q G+KALIE + +LG+ I P +NA GR+ + +LG LI+ D + Sbjct: 253 QGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386 +LD LN RR +ES M EQA + + ++ + + WH G++G+L Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGIL 372 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A R+KEK+ RP A + + + GS RS+ +I +++ G+++K GGHAMAA Sbjct: 373 AGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GL++ F + DG L + +++ +++ AGP+G Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 PVF ++ R+V HL+MT SQ E L AIAF V R K Sbjct: 493 AFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWP----NHRTK 547 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +HV L +N+++G R QL + +PV+ Sbjct: 548 YIHVAYKLDINFYQGRTRLQLLIQAMNPVQ 577 >gi|145219325|ref|YP_001130034.1| single-stranded-DNA-specific exonuclease RecJ [Prosthecochloris vibrioformis DSM 265] gi|145205489|gb|ABP36532.1| exonuclease RecJ [Chlorobium phaeovibrioides DSM 265] Length = 574 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 168/584 (28%), Positives = 276/584 (47%), Gaps = 20/584 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +RW + + A + K ++P +AR+ R V S D A+ F S+ L P P + Sbjct: 4 YRWNLPPVDDAALTSFACSIKASLP--LARIFFMRGVKSYDAAEAFFTASLETL-PSPSL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 KA R+ +AI + EKIMI+GDYDVDG A++ FL + + YI +R +G Sbjct: 61 FASMPKAVGRVQEAIRSGEKIMIYGDYDVDGITGTAMLNLFLRDRDADVSYYINNRFEEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + LIITVDCG ++ A++ A G+DVIV DHH+ E AYA+ Sbjct: 121 YGLSMEGIRAAAERQVGLIITVDCGISANLAIERAGELGMDVIVCDHHE-PEELPDAYAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV F + I L+ LDLVA+AT D+V Sbjct: 180 LNPKVPGCSYPFRELCGCGVAFRFVQAIAEELQLS-----AESWQQYLDLVAIATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 L NR V +G + +++ G++A++ + ++ + + + I P INA GR+G Sbjct: 235 VLSEENRTMVREGFRMMQQRPRVGIEAMLSFMKVNPRDLGMTGVTFGIAPRINAAGRMGS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L+++ E +L+ LN RR + ML++AE V + S IV+ Sbjct: 295 ARKAVDWLLAESKDEAHKHTGELEELNILRRRTDLEMLKRAEEMV--EGHFASYCSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G+VG++A+++ E++ P+ + ++ GS RS+ G +I ++ + Sbjct: 353 YDESWHLGVVGIVASKMLERYHLPTVILGASKE-LVKGSVRSVPGLNIYSVLQEC--SDL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG+++ N F + + ++ +D L + + Sbjct: 410 LEQFGGHHQAAGVSMRPENLPAFRKRFDEISARVLDMDARQKELTVDTELGLGEITGNFM 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ PYG GNP P+F + S+R++ H++ + L IAF Sbjct: 470 KALQRFSPYGVGNPEPLFLTEGLQCTGSVRLLKERHVKFMVRDASGKRLDVIAFDRKD-- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 + + LM+S G+ + L ++ W G Q +V D S VE H Sbjct: 528 IYDALMESSGQSFSMVYSLELHEWNGRVEPQAKVKDLS-VESLH 570 >gi|16803565|ref|NP_465050.1| hypothetical protein lmo1525 [Listeria monocytogenes EGD-e] gi|224501535|ref|ZP_03669842.1| hypothetical protein LmonFR_03292 [Listeria monocytogenes FSL R2-561] gi|16410954|emb|CAC99603.1| lmo1525 [Listeria monocytogenes EGD-e] Length = 783 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 288/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E+I+++GDYD DG S+A++M+ L H +A+ YIP+R Sbjct: 61 FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +++ GGH MAAGLT+ N L Q+ A + P KI+ + + V++ Sbjct: 405 RDLMMAFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ + ++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEKNDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|239631367|ref|ZP_04674398.1| single-stranded DNA-specific exonuclease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525832|gb|EEQ64833.1| single-stranded DNA-specific exonuclease [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 764 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 283/592 (47%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 + ++W Q A A+++ +P +A +L+ R ++ F++P L DP Sbjct: 2 TQYQWQLAP-QPAAADAHALSETLGVPPFLATLLLQRGINDQADYDAFVHPDTSRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI +EKI I+GDYDVDG S A+M+ L + +++IPDR Sbjct: 60 FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G + A G+DV+V DHH++ + A Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPANLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + + + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E G+P+ ++ +DG+ GSGRSIE + + K + A E Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +V GGH MA GLT + + + + A ++ + P I L + + + Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPIATRLEDADLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 ++ P+G GNP PVF+ +Q+++ + HL+ + + I F Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQAIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + + L N W+G+ QL + D + + Sbjct: 520 GDA----AETLATAQTVKLAVQLDQNTWQGNTSLQLMLKDYEVKQPQVIDWR 567 >gi|71281781|ref|YP_270749.1| single-stranded-DNA-specific exonuclease RecJ [Colwellia psychrerythraea 34H] gi|71147521|gb|AAZ27994.1| single-stranded-DNA-specific exonuclease RecJ [Colwellia psychrerythraea 34H] Length = 584 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 182/572 (31%), Positives = 281/572 (49%), Gaps = 29/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKI 95 +P+I+ ++ +R + + L ++ L M D L DKA + + A+ N +I Sbjct: 19 NLPEIIKQIYASRGM---ESAQELELNVAHLQGMVDETALMGMDKACQLLHDALVNKLRI 75 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 +I GD+D DGA S ALMM LS + N + +P+R GYG P +++ + Q++I Sbjct: 76 VIVGDFDADGATSTALMMTALSLFNSNNHDFIVPNRFEYGYGLTPEIVDIAAQQNTQMLI 135 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G + ++ A + G+ VIV DHH A A+VNPN+ L GV Sbjct: 136 TVDNGISCIAGVKRAKDLGMQVIVTDHHLPGHSLPIADAIVNPNQHGCNFPSKALAGVGV 195 Query: 215 VFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 F +++ + + R+ N ++ LLDLVAL TV DVV L NR V +GL Sbjct: 196 AFYLMLALRKYCREQNYFSEQGIAEPNIAQLLDLVALGTVADVVSLDANNRILVEQGLKR 255 Query: 271 ARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 R PG++ALIE N + + A + G+ +GP INA GR+ + + G L++ D Sbjct: 256 IRAGKTRPGIQALIEIANKNQQRLVASDFGFALGPRINAAGRLDDMSYGINCLLATDLSS 315 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLA 387 ++A +LD LN+ RR +E M +AE + + D + I + WH G++G++A Sbjct: 316 ARVMAAELDDLNKTRREIEQGMQAEAEQVLTSLKFDEDNLPNAIALYQQDWHQGVIGIVA 375 Query: 388 ARLKEKFGRPSFAISFEEDG--------KGIGSGRSIEGFDIGKMVSF--AVEEGILVKG 437 RLKEKF RP + +D + GS RSI G I ++ + I++K Sbjct: 376 GRLKEKFHRPCIVFANGKDDDSVDVSEREIKGSARSIPGLHIRDLLEHIDSQHPDIILKF 435 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHAMAAGL+++ NF R F + A + + DG L +++ + L Sbjct: 436 GGHAMAAGLSIKHGNFARFQQLFNELAGKWLKEEDLQSIILSDGELMLEHLSLDFAEKLR 495 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 AGP+G P P+F KL R+V HL++ E Q E IAF V Sbjct: 496 DAGPWGQNFPEPLFDDT-FKLVQQRIVGEKHLKIVVEKQ-GEIFDGIAFNVDVKTWP--- 550 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ K++H+ L VN +RG + Q V + Sbjct: 551 -NAQVKQVHLAYRLDVNEFRGKRTVQFMVENI 581 >gi|302389923|ref|YP_003825744.1| single-stranded-DNA-specific exonuclease RecJ [Thermosediminibacter oceani DSM 16646] gi|302200551|gb|ADL08121.1| single-stranded-DNA-specific exonuclease RecJ [Thermosediminibacter oceani DSM 16646] Length = 854 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 176/581 (30%), Positives = 281/581 (48%), Gaps = 29/581 (4%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL 73 + W A + ++ ++L +R + + FL S+ M +P+ Sbjct: 5 NYVWELNPPVIPSFSAE------NLHPVILKLLKSRGIDRKEDVVRFLRASLED-MYNPM 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D DKA +R+ + + EKI ++GDYDVDG LM+R L N + YIP R+ + Sbjct: 58 LLKDMDKAVQRVKKGLAAGEKITVYGDYDVDGITGCCLMVRALREMGGNVDFYIPSRLDE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N +EK EG LIITVD G S+D ++YA G+DVI+ DHH+ A A Sbjct: 118 GYGLNKEALEKIAREGTTLIITVDNGIASHDEVRYAKELGVDVIITDHHEPHEVVPDAAA 177 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP + D +L GV F + + + LL LDL AL T+ D+ Sbjct: 178 VINPKQKDCPYPFKNLAGVGVAFKFIQALA--------GSDDEILLKYLDLAALGTIADM 229 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VPL+ NR GL + PGL AL+ + + + AE + Y++ P +NA GR+ Sbjct: 230 VPLVDENRIIAKHGLNALKNTDKPGLSALMSQSRLDDAELNAEKISYILAPRLNAAGRLS 289 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ +LL++DD++E LAM L+ LN+ R+ +E+ + + V + D++ VIV Sbjct: 290 DATTAVQLLLTDDTEEARELAMALEDLNRERQALENKIYNEVREYV-EKNIDLENVRVIV 348 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 RWHPG++G++A++L + + P I+ E + +G GS RSI GF+I + Sbjct: 349 ASSSRWHPGVIGIVASKLVQCYCMPCILIAEEGE-EGKGSARSIPGFNI--FEALDKLSY 405 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L K GGH AAG T++ G + A I ID L + +N+ L Sbjct: 406 MLDKFGGHDQAAGFTIKVREIGTFRSKINELAREISREKWDIR-LNIDLELKSEDINMEL 464 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + L+ P+G GNP P+F N ++ +R V HL++ + + + AI F + Sbjct: 465 AEQLKILEPFGFGNPKPLFICKNLSVERVRAVGEGEKHLKIFLKKR-RKEFSAIGFNLGA 523 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + +L +N W G + QL + D Sbjct: 524 YK----DKLEMAPFIDAAFYLELNEWEGVREPQLNLKDIKV 560 >gi|119470493|ref|ZP_01613196.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Alteromonadales bacterium TW-7] gi|119446194|gb|EAW27471.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Alteromonadales bacterium TW-7] Length = 573 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 176/563 (31%), Positives = 275/563 (48%), Gaps = 17/563 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R V L+ + L D + D DKA+ +V A+ I+I Sbjct: 19 HLHPVIKQIYATRRVVDAQE---LDNGVATLH-DYKLFKDIDKASALLVDALKAQSHILI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S A +M+ L N + IPDR GYG +P+L E+ + L+ITV Sbjct: 75 VGDFDADGATSTATLMQGLQMFGFQNLDYLIPDRFSLGYGLSPALAEQIVQIKPDLVITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + + GI V+V DHH + A A+VNPNR + + GV F Sbjct: 135 DNGISCIAGIDILKSVGIKVLVTDHHLQGEQLPNADAIVNPNRHECNFPSKSIAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 +L+ + ++R+ +L +LLD+VAL TV DVV L NR V +GL R Sbjct: 195 YLLIALRSLMREQGYFTQQTPPNLANLLDIVALGTVADVVALDANNRTLVHQGLARIRSG 254 Query: 275 G-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG+ ALIE N + + ++A + G+ + P +NA GR+ + +LG L+S+D + + Sbjct: 255 KTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSNDINQARRI 314 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLK 391 A +LD LN RR +E M +A+A + D I + D WH G++G+LA RLK Sbjct: 315 ASELDSLNHARREIEQGMQAEAQAVLDRLAFTDDNIPDAICLFQDDWHQGVIGILAGRLK 374 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 EK+ RP+ + E+G+ GS RSIEG + ++ ++ K GGHAMAAGL+++ Sbjct: 375 EKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTATPHLINKFGGHAMAAGLSID 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 NF F + + DG L + + +L+ +GP+G P P Sbjct: 435 EQNFNDFKKAFDAAVSAQLSEESKRCIVFTDGELPSDCFTMEFAQLLKQSGPWGQQFPEP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 VF +L R+V HL++ + Q + AIAF + + + + + V Sbjct: 495 VFEHT-FELIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPD----TEARFVKVAY 549 Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG QL V + V Sbjct: 550 QLDINEFRGKFSLQLIVRELEKV 572 >gi|310829083|ref|YP_003961440.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium limosum KIST612] gi|308740817|gb|ADO38477.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium limosum KIST612] Length = 690 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 182/579 (31%), Positives = 285/579 (49%), Gaps = 28/579 (4%) Query: 18 WVSLLGQ--EGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + I +T++ + + AR+LV R D A +L P DP Sbjct: 6 WKERKSKTEANIAAVEELTEECGLTPLSARLLVKRGYDTADKAMAYLEPDFSDFY-DPFG 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D KA R+++A EK+ I+GDYD DG +V+++MR+ + A IP+R+ +G Sbjct: 65 LPDMQKAVDRLLKAREQGEKVCIYGDYDADGTTAVSILMRYFKGIGIEAFYRIPNRLEEG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E I GA LI++VD G +++ + Y QG+DVIV DHH+ + E A A+ Sbjct: 125 YGMNIPALEAVIKMGATLIVSVDNGIAAHEQVDYCNEQGVDVIVTDHHECQGEVPRALAV 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+ R D LC AG+ +++ + R+L D+ DL ++ A+ATV D+V Sbjct: 185 VDAKREDSDYPFSELCGAGIALKMVMALDRVLELDS------DLQEYIECAAIATVADIV 238 Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 PL NR G+ N G++ALIE + + A N+G++I P INA GR+GE Sbjct: 239 PLKSENRIIASLGIDYLNTSPVNLGIRALIEVSELKR-VNAGNIGFVIAPKINAAGRLGE 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L ++ D + +A L + N+ R+ +E +LE A+A+V Q D Q ++VV Sbjct: 298 AGKVVELYMTQDEAQAAEIAAYLSMENRKRQDIEQEILELAKAQVEQQHLDEQG--IMVV 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 GD WHPG++G++A++L+E + P I +E G G GS RS+EGF+I + + E + Sbjct: 356 AGDGWHPGVIGIVASKLQETWYHPVVVIGIDEKGMGKGSCRSVEGFNIFEALQSCSE--L 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 GGH AAGL++ + + + +A + T D V+ V+ AL Sbjct: 414 FTTFGGHEQAAGLSIPAEDIPQFAEKVNDYASEKGIDRLLTKTMYYDSVMGIGDVSEALA 473 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + L+ PYG GNP PVF K Q R + HL + + + F + Sbjct: 474 EELDQFEPYGVGNPGPVFLMEGLKPQDARKMGSDKTHLMFSL-----PPYRCVGFGM--- 525 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G L + + +N +R K QL + D Sbjct: 526 --GAALDDGTDGQFSILCKPEINCFRDKKSVQLLLKDIK 562 >gi|326334800|ref|ZP_08201005.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693049|gb|EGD34983.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 574 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 161/583 (27%), Positives = 276/583 (47%), Gaps = 31/583 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDI-----VARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 W L ++Q + +A +L+ R + S AK+F NPS+ L + Sbjct: 7 WDFLPI-PMQEEIETLSQTLFSSTLPWQKTIACLLLQRGIHSFKQAKEFFNPSLEQLH-N 64 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P ++ D D+A RI+ AI + E I+I+GDYDVDG SV+++ FLS N + Y+PDR Sbjct: 65 PFVMKDMDRAVERILLAIKHKENILIYGDYDVDGTCSVSILYLFLSKVYPNVSTYVPDRY 124 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG + ++ ++ LIIT+DCG ++ +QYA +GI++I+ DHH A Sbjct: 125 KEGYGISFQGIDYAVDNDVSLIITLDCGIKGHEKVQYAKGKGIEMIITDHHTPAETLPKA 184 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP R D LC G+ F ++ + + L+ + P LDLVALAT Sbjct: 185 VAVLNPKRADCTYPYKELCGCGIGFKLIQALCKSLQLPSHTP-----YEFLDLVALATCA 239 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D+VP+ G NR V GL Q + + L ++ PI +L ++ P INA GR+ Sbjct: 240 DIVPITGENRVLVYFGLRQINEQPSQVMTLL--LASVPPPIQVRDLVFVAAPRINAAGRM 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + L + A L+ LN R+ + + ++A ++++ ++AS Sbjct: 298 AHAQKAVDFLTQN----ALEEASCLEFLNHKRKGADEQITQEALEQIVSN--HEEEASAT 351 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV WH G++G++A+RL E + RP+ + D S RS++G+++ + Sbjct: 352 VVFSKDWHKGVIGIVASRLTETYYRPTIVFTQSGD-VLTASARSVKGYNLYEA--LCQCR 408 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 L++ GGH AAG+T+ N+ FQ+ +P + P + + + + Sbjct: 409 DYLLQFGGHTAAAGMTLLPENYLPFKKRFQEIVAQTLPEALRKPAITLSVEMPLKEITLP 468 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQD-SETLQAIAFRV 548 L+ P+G N P+F +++ ++ HL+MT + +A+ F + Sbjct: 469 FYRCLQRFAPFGPKNMTPIFLAYEVIAKNVFLMGNEGSHLRMTLTDSSLRQEFEAVGFGL 528 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + +G+ + L N W+G+ QL + D P Sbjct: 529 GHKK----SIVEKGQPFTIAYELSQNTWKGTTSLQLVIKDIMP 567 >gi|254829716|ref|ZP_05234371.1| hypothetical protein Lmon1_00105 [Listeria monocytogenes 10403S] gi|254898309|ref|ZP_05258233.1| hypothetical protein LmonJ_00800 [Listeria monocytogenes J0161] gi|254912199|ref|ZP_05262211.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes J2818] gi|254936527|ref|ZP_05268224.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes F6900] gi|258609121|gb|EEW21729.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes F6900] gi|293590172|gb|EFF98506.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes J2818] Length = 783 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E+I+++GDYD DG S+A++M+ L H +A+ YIP+R Sbjct: 61 FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +++ GGH MAAGLT+ N L Q+ A + P KI+ + + V++ Sbjct: 405 RDLMMAFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|229844831|ref|ZP_04464969.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 6P18H1] gi|229812212|gb|EEP47903.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 6P18H1] Length = 575 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 167/565 (29%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQKKIVIIG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E + +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMALEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R + Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E++M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEASMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + + DG LN++ N+ +++S G +G G P P F Sbjct: 435 HFADFQHLFNQTIADWLDEEHLQGIIWTDGELNSNEFNLETAKLIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNIDTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLDINEFRGNRSVQLLVDYIEPID 574 >gi|227112635|ref|ZP_03826291.1| ssDNA exonuclease RecJ [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 584 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 183/573 (31%), Positives = 278/573 (48%), Gaps = 29/573 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V L + L+ + +L+ DKA + QA+ I+I Sbjct: 20 VPPLLRRLYAQRGVKGAQE---LERGLSGLL-NYRLLSGIDKAIDLLQQALAEKRCIVIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L VN +P+R +GYG +P ++ + GA+LI+TVD Sbjct: 76 GDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVVLQAEKLGAKLIVTVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A++NPN D L GV F Sbjct: 136 NGISSHAGVEDAHRRGITVLVTDHHLPGEILPDADAMINPNLPDCQFPSKALAGVGVAFY 195 Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 +++ ++ LR N +L LLDLVAL TV DVVPL NR V +GL Sbjct: 196 LMMALFVRLRDSNWFTQPLFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 255 Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R PG++AL+E N S + A +LG+ +GP +NA GR+ + +G LL+S+D Sbjct: 256 NRIRAGECRPGIRALLEVANRDASQLVASDLGFALGPRLNAAGRLDDMTVGVELLLSNDI 315 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385 + MLA LD LNQ+RR +E M +A + + + + + WH G+VG+ Sbjct: 316 TQARMLANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGI 375 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443 LA+R+KE+F RP A + DG GSGRSI G + + G++ K GGHAMA Sbjct: 376 LASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMA 435 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502 AGL++ F F + + V DG L ++ ++ +ML AGP+ Sbjct: 436 AGLSLHEDRFEDFRQRFGELVGEWLDPSQLEGVVWSDGELVLPELDLLSTAEMLRYAGPW 495 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558 G P P F ++ R++ HL+ FE + L IAF + + + Sbjct: 496 GQAFPEPTFDGC-FRILQPRLLKERHLKAMFEPIGATGQVPLLDGIAFNIDTSIWPD--- 551 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K + + L +N +RG + QL + P Sbjct: 552 -PSIKEVEMVYRLDINEFRGKRSVQLMIQHLWP 583 >gi|258648096|ref|ZP_05735565.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella tannerae ATCC 51259] gi|260851963|gb|EEX71832.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella tannerae ATCC 51259] Length = 572 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 169/585 (28%), Positives = 276/585 (47%), Gaps = 22/585 (3%) Query: 16 FRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 ++W E A + ++ + ++ ++L++R + K F P + L DP Sbjct: 3 YKWNLKETAPEQAAEAARLAKEAGVHPVLGKLLLDRGLHDPQEVKRFFRPQLTELH-DPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D A R+ +A+ +E++M++GDYDVDG +VAL+ RFL N + YIPDR + Sbjct: 62 LMDDMQAAVDRLNRAMLQNERVMVYGDYDVDGCTAVALVFRFLRQYYSNLDTYIPDRYKE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + + ++ G +L+I +DCG + + + YA + GID I+ DHH E PA A Sbjct: 122 GYGISRAGVDYAAETGVRLVIVLDCGIKAVEEIAYARSLGIDFIICDHHVPGIELPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R D+ HL GV F + + L+ LLDL A++ D+ Sbjct: 182 ILNPKRQDNHYPYAHLSGCGVGFKFMQAFAISNGIE-----FNKLVPLLDLCAVSIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VP++G NR GL + GL+A+IE +T ++ + IGP INA GRI Sbjct: 237 VPIMGENRILAWHGLRCLNTNPSIGLQAIIEVCGLTEHELTMNDIIFKIGPRINASGRIQ 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 RLL+ D +A K+++ N+ R+ ++ M EQAE V D++Q IV Sbjct: 297 NGKEAVRLLVERDYTTALEMAGKINLYNEARKDIDKQMTEQAEDLV-RHLPDLEQRRAIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V WH G++G++A+RL E++ RP+ ++ E G GS RS+ GFD+ K V+ Sbjct: 356 VYNKEWHKGVIGIVASRLTEQYYRPAVVLTESE-GVATGSARSVSGFDVYKAVADC--SD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGH AAGL+++ N + F+ + + T ID VL+ +N Sbjct: 413 LLENFGGHTYAAGLSLKVENVAAFTERFEAYVEKHILDEQTQASLDIDAVLDFKDINFGF 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV---NLAHLQMTFES-QDSETLQAIAFRV 548 L P+G N P+F + V H+++ + + + IAF Sbjct: 473 YKQLRRFSPFGPDNVKPLFCTKHVYDYGTSKVVGRGQEHIKLELVDNKSNNIMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + N + QL++ D P E Sbjct: 533 S----SRARYIKTKRAFDICYAIEENSHK-RGDVQLQIEDIRPCE 572 >gi|209694157|ref|YP_002262085.1| ssDNA exonuclease RecJ [Aliivibrio salmonicida LFI1238] gi|208008108|emb|CAQ78249.1| single-stranded-DNA-specific exonuclease RecJ [Aliivibrio salmonicida LFI1238] Length = 579 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 182/571 (31%), Positives = 288/571 (50%), Gaps = 25/571 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ R ++ + L + L+ + +KA +V+AI +I++ Sbjct: 18 SIPSILQRIYATRGITS---NNQLERGAKHLL-SFQSMHGIEKAVDILVEAIAKQTRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+DVDGA S AL + N + +P+R DGYG +P ++++ GA++I+TV Sbjct: 74 VGDFDVDGATSSALSVMAFRMMGSNNVDYLVPNRFEDGYGLSPDVVDQAKAMGAEIIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH S A ++VNPN + L GV F Sbjct: 134 DNGVSSIDGVAAAKAYGMQVVVTDHHLPGSSLPIADSIVNPNLEECAFPSKSLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ I LR++N +L LLDLVAL TV D+V L NR V +G+ R Sbjct: 194 YLMLAIRARLRENNWFETQNIPIPNLADLLDLVALGTVADLVALDENNRILVHQGIQRIR 253 Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++ALIE N S I A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKCRPGIQALIEVANKVPSRINASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLE--QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M E A + L + +V+ WH G++G+LA+ Sbjct: 314 RMASELDALNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 RLKEK+ RP A + DG GS RSI GF + + G+++K GGHAMAAGL Sbjct: 374 RLKEKYHRPVIAFADGGDGLIKGSCRSISGFHMRDALDLIDTRNPGLILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 +++ V++ R F V T V DG L + ++L + GP+G Sbjct: 434 SIKEVDYKRFSQAFDDVVRESVEEEALTGVVLSDGELMPEEFTLGTAEILRAGGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ + R+V HL++ E ++ + AIAF + + + Sbjct: 494 PEPIFDGE-FKVLNQRLVGEKHLKLMLEPIHKDFPTNKMIDAIAFNIDVRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +++ + L +N +RG++ QL V P+ Sbjct: 549 VQKVKLAYRLDINEFRGNQTLQLMVDYIEPI 579 >gi|257884694|ref|ZP_05664347.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,501] gi|261207763|ref|ZP_05922448.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TC 6] gi|257820532|gb|EEV47680.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,501] gi|260078146|gb|EEW65852.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium TC 6] Length = 744 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 174/563 (30%), Positives = 272/563 (48%), Gaps = 30/563 (5%) Query: 33 ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + V ++L R + FL+P + L DP ++ D DKA RI +A+ + Sbjct: 1 MIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPYLMHDMDKAISRIQEAVIS 59 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI+++GDYD DG S +M L +++P+R GYGPN S+ ++ I EG Q Sbjct: 60 GEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEHGYGPNQSVYQEKIEEGIQ 119 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 LIITVD G DA+ YA G+DVI+ DHH++ AYA+V+P L Sbjct: 120 LIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYAIVHPRHPAGHYPFPDLAG 179 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 GV F V + LDLVA+ T+ D+V L NR V G+ Sbjct: 180 VGVAFKVASALLEE-----------PPAEFLDLVAIGTIADLVSLTDENRILVSLGIDAI 228 Query: 272 RRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 GL+AL E + E +G+ I P +NA GR+G+ LL + D +E Sbjct: 229 HHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEAS 288 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + A KL+ +N+ R+ + + ++A A V + + ++ WH G++G++A ++ Sbjct: 289 VQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHLLVNRGWHEGVLGIVAGKI 342 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + G+P+ ++ +EDG GSGRSIE ++ + GGH A GLT+ Sbjct: 343 MNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRDLFTYFGGHHAAVGLTMPS 400 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N L + ++ + L+ P +ID VL + V + ID L+ P+G NP P Sbjct: 401 ENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQ 460 Query: 511 FAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F F + ++I+ + HL+ S+ L A+AF +GT E L ++ V Sbjct: 461 FLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FGTQEEELLNN----QVDVV 514 Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591 G L +N W G K+ QL V D S Sbjct: 515 GKLSINEWNGRKKPQLMVSDFSV 537 >gi|307565810|ref|ZP_07628271.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella amnii CRIS 21A-A] gi|307345434|gb|EFN90810.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella amnii CRIS 21A-A] Length = 574 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 161/587 (27%), Positives = 282/587 (48%), Gaps = 22/587 (3%) Query: 16 FRWV-SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W Q+ A + +K ++ +++ +L+ R ++ + AK F +P + L+ +P Sbjct: 3 FKWKYIPPTQQEEIAAKELGEKLSMSPVLSLILIRRGITTESAAKRFFHPQLSDLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ + E+I+++GDYDVDG SVAL+ +FL N + YIP+R + Sbjct: 62 LMKDMDLAVDRLNDAMGHKERILVYGDYDVDGCTSVALVYKFLRQYYSNIDYYIPNRYNE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + + G +LII +DCG + + + YA GID I+ DHH + PA A Sbjct: 122 GYGVSKKGISFAKETGVKLIIILDCGIKALEEIAYAKELGIDFIICDHHVPDEKMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD A++ D+ Sbjct: 182 ILNPKRKDDTYPFKHLCGCGVGFKFMQAFAK-----NNNIPFSRLVPLLDFCAVSIASDL 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP+I NR GL + + GLKA+I+ +S + ++ + IGP INA GR+ Sbjct: 237 VPVIDENRILAYHGLRQLNKNPSLGLKAIIDTCGLSGRELEMSDIIFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D E A +D N+ R+ ++ M E+A K++ + ++ + S I Sbjct: 297 TGKESVDLLVERDFAEAVKAAKHIDEYNEQRKGVDRQMTEEA-NKIVERLENQKHQSSIF 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W GIVG++A+RL E + RP+ ++ + + GS RS+ GFDI + + Sbjct: 356 LYDEHWKKGIVGIVASRLTEIYFRPTIVLTKDGE-YATGSARSVAGFDIYEAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+ GGH AAG+T++ Q F + P+ +D +++ + + Sbjct: 413 LLINFGGHTYAAGVTLKWSKVKEFRKRLQLFVEKHIQPHQQEPILNVDAIIDFKDITKKM 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRV 548 + L+ P+G N P+F+ + +VV H+++ + + + IAF Sbjct: 473 HNDLKRFSPFGPNNSKPIFSTEKVYDFGTSKVVGREQEHIKLELVDSKSNNVMNGIAFGQ 532 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + N ++ + QL++ D E Sbjct: 533 S----AAARYIKSKRSFDIAFTIEDNIFKHNL-VQLQIEDIRQTENE 574 >gi|227524131|ref|ZP_03954180.1| exonuclease RecJ [Lactobacillus hilgardii ATCC 8290] gi|227088709|gb|EEI24021.1| exonuclease RecJ [Lactobacillus hilgardii ATCC 8290] Length = 776 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 188/585 (32%), Positives = 283/585 (48%), Gaps = 28/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S F+W + A+++ I ++A +L+ R VS + A +DFL PS + DP Sbjct: 4 SKFKWQIK-QNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D K RI A+ N E+I ++GDYD DG S +M L+ N + YIP+R Sbjct: 62 YLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRFS 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN +K IN G LIITVD G +A+ A + DV+V DHH + AY Sbjct: 122 DGYGPNVDAFKKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAY 181 Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A+++P N+ G L AGV V + L D L+D+ A+ T Sbjct: 182 AIIHPRVKNQEGQAYPFGDLSGAGVALKVAQALMEDLPID-----------LIDVAAIGT 230 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308 V D+V L NRA V GL R PGL ALI+ +I S +++G+ I P +N+ Sbjct: 231 VADIVSLKDENRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSL 290 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRI ++N+G LL + D Q+ LA D N +R+ + +QA V + D + Sbjct: 291 GRIDDANIGVELLSTFDDQKATELAEFADHQNDSRKSLVDEFYQQAVQMVES-SGDAENR 349 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427 S +VV GD WH G++G++A++L EK+GRP+ ++ + + GSGRS+E FD+ + Sbjct: 350 STLVVVGDDWHQGVLGIVASKLVEKYGRPTIVLTSQHGNDQVKGSGRSVESFDL--FSAI 407 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + GGH A GLT+ + L D +K A N L P I ++A Sbjct: 408 DPIRDQTIGFGGHHSAIGLTINKDKISVLKDQLEKAAGNQELDLSQKPTLDIAAKISADQ 467 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545 ++ I L P+G NP PVF +L ++ + HL+ + ++ L A+A Sbjct: 468 IDNQFIKNLNVLAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLV-KNKSRLTAVA 526 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F G + + + V+G + N W QL V D Sbjct: 527 F---GRGAAAGQLSNGSASIKVSGEINENTWNNHTTIQLMVSDLK 568 >gi|119775869|ref|YP_928609.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella amazonensis SB2B] gi|119768369|gb|ABM00940.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella amazonensis SB2B] Length = 574 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 169/563 (30%), Positives = 284/563 (50%), Gaps = 21/563 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++L R V+ D + L+ +R P + D+AA + A S++++I Sbjct: 19 HLHPLIKQLLARRGVAGDDCEQELSRLLR-----PETMLGLDRAACLLADAAMASKRMLI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ + L ++ A+ IP+R GYG + L+ + +GA+++ITV Sbjct: 74 VGDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALAVEKGAEVLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V++ DHH A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR+ +L L+D+VAL TV DVV L NR V GL R Sbjct: 194 YLMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNRILVDAGLKRVR 253 Query: 273 R-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+ AL+E + A + G+ +GP +NA GR+ E +LG L+ DD Sbjct: 254 AGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLGVETLLCDDIMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E+ M +A + Q ++ Q I + D WH G++G+LA+R Sbjct: 314 RMAAELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQDDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLT 447 +K+K+ RP A + D + GS RSI+G + ++ + G++ K GGHAMAAGL+ Sbjct: 374 IKDKYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGLIPKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + + + + F ++ + T DG L + + +++ ++GP+G G Sbjct: 434 LAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANLIRASGPWGQGFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + +L R+V HL+M E++ L AIAF V + + + +H Sbjct: 494 EPLFDG-HFRLLQQRLVGEKHLKMMVETECGRLMLDAIAFNVDLKLWPDATV----RHVH 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDA 589 + L VN +RG++ QL V Sbjct: 549 LAYRLDVNEFRGNQSLQLLVEQI 571 >gi|323340873|ref|ZP_08081124.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus ruminis ATCC 25644] gi|323091724|gb|EFZ34345.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus ruminis ATCC 25644] Length = 772 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 178/584 (30%), Positives = 291/584 (49%), Gaps = 28/584 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S + W Q ++ + + + ++VA +L+NR + A++FL P L DP Sbjct: 4 SRYEWK-KGPQTDQDQTKKLAEALNLSELVAEILINRGYDTKEKAENFLKPGPENLY-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D K RI AI +KI ++GDYD DG S ++M L+ + YIP+R Sbjct: 62 YLMHDMKKGTDRIRTAIVEGQKITVYGDYDADGLTSTSIMYEALTQLGAECDYYIPNRFD 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + ++ I+ G QLI+TVD G ++A+++A QG+DV++ DHH++ E AY Sbjct: 122 DGYGPNKDVYKRLIDNGTQLIVTVDNGVAGHEAIEFAKEQGVDVVITDHHELPQELPDAY 181 Query: 193 ALVNPNRL--DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A+++P D G L AGV F + + Q+ LDL A+ TV Sbjct: 182 AIIHPKIPNDDGDYPFGGLSGAGVAFKAATALLEEIPQEA-----------LDLCAIGTV 230 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGG 309 D+VPL+ NR V GL R GL AL E + + E +G+ I P++NA G Sbjct: 231 ADLVPLVDENRVLVKYGLEALRSTERIGLLALYEECGLKQDEVDEETIGFGIAPNLNALG 290 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 RI ++ +G LL + D Q +A + N R+ + + QA+ + + + Sbjct: 291 RISDATVGVELLTTMDEQRASEIAKNVLQQNIERQNLVKDITAQAQDLLNEES---KNHL 347 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFA 428 V +V G++WH G++G++A+RL E G+P+ + + G GSGRS+E F++ + Sbjct: 348 VNLVWGEKWHEGVLGIVASRLVESTGKPTIILGINRDSGLAKGSGRSVEAFNL--FDALD 405 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 +L K GGH MA GLTV +L + + A N V +DG ++ S + Sbjct: 406 GHRDLLEKFGGHHMACGLTVSADELPKLQEILDQEAKNQNLESAAKQVKILDGDIDLSEI 465 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSE-TLQAIAF 546 N +I L GP+G NP PVF++ + ++ + + HL++ + + + A+ F Sbjct: 466 NPEMIQELSVIGPFGTNNPKPVFSYRGYVVEDAKPMGNGNHLRLNLLNDERTVKVAAVCF 525 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 V G + EFL + + G L +N W+ + Q+ + D Sbjct: 526 GV-GNKIAEFLAN--PEAIKFIGSLSINVWQNQRYPQIMIEDLK 566 >gi|257464738|ref|ZP_05629109.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor 202] gi|257450398|gb|EEV24441.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor 202] Length = 571 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 178/558 (31%), Positives = 270/558 (48%), Gaps = 19/558 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ +R V + L +++ L P L+ D+A +V+A I+I G Sbjct: 19 HPLLNRLYQSRGV---QSTKELERTLQHLHH-PQQLSGIDQATDLLVEAYEQQANIIIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L IPDR GYG + + + + L+ITVD Sbjct: 75 DFDADGATSTALTLLALRQLGFQHVEYLIPDRFSQGYGLSLDIANMILEKEVDLVITVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + GI V+V DHH + A A+VNPN L GV F V Sbjct: 135 GISSFEGIALLKENGIKVLVTDHHLPAEQLPNADAMVNPNLSYCPFPSKSLAGVGVAFYV 194 Query: 219 LVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GN 276 ++ + +R+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 195 MLALRSKMREKNLFQGKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLNRIRSGACR 254 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 G+KAL+E + A +LG+ I P +NA GR+ +LG LL +D+ LA + Sbjct: 255 VGIKALVEVGKRDLETLQAADLGFAIAPRLNAAGRLENMSLGVELLTADNMDIARQLAFE 314 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ E M +A A +QA IV+ WH G++G+LA+R+K++ Sbjct: 315 LDSLNQTRKEFEQEMKTEALAICAKLPSLAQKEQAHGIVLYQPDWHQGVIGILASRIKDQ 374 Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 F RP A + E + GS RSI G + ++ + ++VK GGHAMAAGLT+ Sbjct: 375 FHRPVIAFAQENEDSPFIKGSARSINGLHMRDLLERIDSHYPELIVKFGGHAMAAGLTIH 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + NF + F + ++ + + DG L A + + +L+ AGP+G P P Sbjct: 435 QDNFLKFQKIFDEKIDEMIAPELLQGIIYTDGELQADEFTLEIASLLQQAGPWGQHFPEP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F N ++ R++ HL+M E++ L AI F + + K+ + Sbjct: 495 TFEG-NFRILQQRLLGGKHLKMMLENEKGTLLDAIWFNIDLRSFPDM----SVKKAKIIY 549 Query: 570 HLCVNYWRGSKRCQLRVL 587 L +N ++G+K QLRV Sbjct: 550 KLDINEYKGNKNLQLRVE 567 >gi|157960635|ref|YP_001500669.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella pealeana ATCC 700345] gi|157845635|gb|ABV86134.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella pealeana ATCC 700345] Length = 574 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 170/564 (30%), Positives = 273/564 (48%), Gaps = 21/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I+ ++ +R VS + L +R P + ++AA+ + AI E I+I Sbjct: 20 FSPILKQIYASRGVSASDCELSLAKLLR-----PNTMAGLEQAAKIVADAIEAQEAILIM 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S ++ + L + IP+R GYG + ++ ++ A+L+ITVD Sbjct: 75 GDFDADGATSTSVCVLALRMMGAQKVDYLIPNRFDYGYGLSSEIVAVAASKNAELLITVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + + A G+ V++ DHH A A+VNPN+ + GV F Sbjct: 135 NGISSIEGVAAAKACGMTVVITDHHLPGHTLPDADAIVNPNQDGCGFASKSIAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-AR 272 ++ + LR N L +L LLD+VAL TV DVV L NR V GL Sbjct: 195 LMSALRAELRSRNWYQLQNIAEPNLAQLLDIVALGTVADVVSLDTNNRILVEAGLQRVKA 254 Query: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 255 GRCRVGITALLEIAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDIMLARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E+ M ++A + + + ++ + I + WH G++G+LA+R+ Sbjct: 315 MASELDGLNAERRDLEADMQQEALKSLESIELNEAELPWGIAIFQADWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL++ Sbjct: 375 KDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINTRHPGLILKFGGHAMAAGLSI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + F + D + K ++ + T DG L + L L +AGP+G Sbjct: 435 QAGQFAQFADAYDKAVREVLAPELLTGELVSDGELVPEQFKLELASELRAAGPWGQSFTE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F ++ R+V HL++ E++ L AIAF V + +Q V Sbjct: 495 PLFDGY-FRVIQQRIVGEKHLKLILETECGRVMLDAIAFNVDLKTWPDATIQYA----QV 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL V P Sbjct: 550 VYKLDVNEFRGNESLQLMVEQIEP 573 >gi|209544632|ref|YP_002276861.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter diazotrophicus PAl 5] gi|209532309|gb|ACI52246.1| single-stranded-DNA-specific exonuclease RecJ [Gluconacetobacter diazotrophicus PAl 5] Length = 619 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 222/596 (37%), Positives = 314/596 (52%), Gaps = 12/596 (2%) Query: 6 FLGVECSISGFRWVSLLG---QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 LGV S+ G RW+ G L I Q+ + DIV ++L R + A FL+ Sbjct: 28 VLGVAASLGGRRWLWRDPVLADAGGRVGLMIAQQAGVSDIVGQMLAARGLDGRSAATFLD 87 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R LMPDP L D D AA R+ A+ E + +FGDYDVDGA + AL+ + L Sbjct: 88 PTLRALMPDPSALRDMDPAAERLADAVRRGETVAVFGDYDVDGACAAALVTQLLRDLGCP 147 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++PDR+ +GYGPN +E GA L++ VDCG+ + D L + D+IV+DHH Sbjct: 148 VLTHVPDRMTEGYGPNAPALEALAARGATLVVCVDCGTAAGDILAGLAGR-ADIIVLDHH 206 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240 + + P A VNPNRLD SGQ LCAAGV FL V R LR+ DL++ Sbjct: 207 KAEGPPPPVLATVNPNRLDCTSGQRGLCAAGVAFLAAVATVRTLRRAGWFAARPEPDLMA 266 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LD+VALATVCDV+PL LNRA V +GL + R+ GL AL+E P++A G+ Sbjct: 267 FLDIVALATVCDVMPLTDLNRALVTQGLKILARRQRTGLDALLEVAGARDPLSAFTCGFA 326 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGRI ES LG LL+ DD+ E LA +LD +N+ R+ +E+ +L++A + + Sbjct: 327 LGPRINAGGRIAESGLGLDLLLCDDAAEARRLAERLDAVNRRRQTVETTILDRAMDEAAS 386 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Q V+++ G WHPG+VG++A R+KE+F RP + EDG GS RS+ D Sbjct: 387 QRAA--GRGVLLLSGRDWHPGVVGIVAGRIKERFNRPVLVGAELEDGTVKGSSRSVADLD 444 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + A + G+L GGGHAMAAG ++ R L DF + AL I+ Sbjct: 445 LGAAIIAARQAGLLTTGGGHAMAAGFSLPREGVPALHDFLEARLAGA-TALPDATDVLIE 503 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537 GV++ + L + P+GAGN P+ A P ++ + L++ E Sbjct: 504 GVVHVAGATTELATDIGRLAPFGAGNDEPILAIPRVRVVRADRIGREGNTLRVLVEGEGG 563 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L+A+ FR P L +H+ G L W G + DA+ Sbjct: 564 GPRLKALLFRADDHPATPILEDRNAPPLHLAGWLRAESWNGRVSAGFFIRDAAIAT 619 >gi|116333979|ref|YP_795506.1| single-stranded DNA-specific exonuclease [Lactobacillus brevis ATCC 367] gi|116099326|gb|ABJ64475.1| exonuclease RecJ [Lactobacillus brevis ATCC 367] Length = 773 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 183/587 (31%), Positives = 279/587 (47%), Gaps = 27/587 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W A+ I IVA++L NR + A DFLNP L DP + Sbjct: 6 YHWNIKHVDRPSAEVQALATAADISPIVAQILWNRGYQTAPAAHDFLNPGPEQLH-DPSL 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DK RI AI ++I I+GDYD DG S A++ L+ N YIP+R DG Sbjct: 65 LNDMDKGIERIETAIGEEQQITIYGDYDADGVTSTAILYETLNEMGAKVNYYIPNRFSDG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + EK I G QL +TVD G +A+ A G+DV+V DHH++ E AYA+ Sbjct: 125 YGPNVAAFEKLIAAGTQLFVTVDNGVAGNEAIAAAKKAGVDVVVTDHHELPEELPDAYAI 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P G L AGV F V + + QD LLDL A+ TV D+V Sbjct: 185 IHPRYPGAEYPFGGLSGAGVAFKVAQALREEIPQD-----------LLDLAAIGTVADLV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL+ NR V GL + ++ PGL AL++ I +T +++G+ I P +NA GR+ + Sbjct: 234 PLVDENRVLVYFGLQLLKQDERPGLLALMQTAGIKSDDLTEQSIGFGIAPRLNALGRLDD 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++ LL + D + E LA + N+ R+ + ++ A + + D Q + +V+ Sbjct: 294 ASPAVELLTTVDEAKAEELAKMTEQKNRQRQELVQSISTAALQQAVD--ADHQDRATLVI 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++A+++ E G+P+ ++ + G+ GSGRS+E F++ + + Sbjct: 352 SGHDWHEGVLGIVASKVVEATGKPTLVLNIQ-AGRAKGSGRSVEAFNL--FAALDGHRDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH MA GLTV L D A A + L +AV +L Sbjct: 409 MTAFGGHHMAVGLTVPEDQLTALADALDDEAQTQALAQSGPSELPVAATLPVAAVTPSLY 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTP 552 L P+G N P+FAF + + ++V+ H + F+ Q+ + L AI F Sbjct: 469 QELAQLAPFGTDNLQPLFAFESATVTQVKVIGKDHSHLKFQLQEGQHQLNAIQFGAAKYV 528 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS----PVEGH 595 + + V G + N W+G Q+ V D PV+ Sbjct: 529 DD---LTAAPDDAAVLGTIEDNVWQGRHSLQVMVKDLKTSVTPVQDQ 572 >gi|254852149|ref|ZP_05241497.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL R2-503] gi|258605452|gb|EEW18060.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL R2-503] Length = 715 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + +++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADISV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|300764808|ref|ZP_07074798.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL N1-017] gi|300514484|gb|EFK41541.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL N1-017] Length = 783 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + +++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADISV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|259503101|ref|ZP_05746003.1| recombination protein J [Lactobacillus antri DSM 16041] gi|259168967|gb|EEW53462.1| recombination protein J [Lactobacillus antri DSM 16041] Length = 772 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 168/582 (28%), Positives = 279/582 (47%), Gaps = 28/582 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 + W + A+ ++ +I + +A +L R ++ A +DFL PS+ + DP + Sbjct: 6 YNWQDQSAKVDQQVVQALQKELSISETLATLLAERGITDAQAAEDFLKPSLAAIH-DPRL 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI A+ N EKI ++GDYD DG S A+M L+ + + Y+PDR DG Sbjct: 65 LHDMDKAVERIQTAVANGEKITVYGDYDADGITSTAVMYEALNGIGADVDYYVPDRFKDG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN E+ I G +LI+TVD G + ++ A QG+DVI+ DHH++ +E A A+ Sbjct: 125 YGPNQDAYERIIASGTKLIVTVDNGVSGKQVVESAIAQGVDVIITDHHELPAELPQATAI 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P L GV F ++ + + +LDL+A+ + DVV Sbjct: 185 VHPRYPGSDYPFPDLSGVGVAFKLVWALQEEFPE-----------EMLDLLAIGEIADVV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 + NRA + G+ R+ PGL AL+ ++ +T + +G+ I P +NA GR+ Sbjct: 234 SVTDENRALISLGIQELRQGMRPGLHALVNLAGVNEGQLTDQEIGFTIAPRLNALGRVTN 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N G LL + D LA +++ NQ RR + ++E A + ++ Q+ V+V+ Sbjct: 294 ANAGVELLTTLDESRGRKLAEQVEAANQERRQLVDQIMEAASKQAVS--PANQKRPVLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEG 432 G WH G++G++A+R+ ++ G+P+ + + SGRS+ GFD+ + Sbjct: 352 AGHNWHQGVLGIVASRIMDETGKPTIVAGINDGEEVAKASGRSVPGFDL--FRALDGHRD 409 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GL++ G L + A + I L A V L Sbjct: 410 LFTAFGGHPAACGLSLPEDQLGPLQEALVAEAADQGFTGKQKQPLAIAAKLAAGDVTEQL 469 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 L+ GP+G GNP PVF + + +++ + HL+ Q L +AF Sbjct: 470 YQQLQQLGPFGPGNPQPVFLLRDVQPTNVKTMGKDNSHLKFNLSPQ----LAVVAFNQGK 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L+ +G + + + +N W+G ++ QL + D Sbjct: 526 LA---PLLSGQGMTVDIVAKISINEWQGKRQVQLLLEDLQIA 564 >gi|284053195|ref|ZP_06383405.1| exonuclease RecJ [Arthrospira platensis str. Paraca] Length = 686 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 167/612 (27%), Positives = 288/612 (47%), Gaps = 35/612 (5%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKD 59 M DQ + E + RW E A ++++ + I+A++L+NR + + + A+ Sbjct: 1 MEDQPTITTEALLPKQRWHIFP--ERPEIAQSLSETTGVHPIIAQILINRGIETTEQAEA 58 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FLNP + L D K + + AI N +KI I GDYD DG S AL++R LS Sbjct: 59 FLNPQSQTLPEPMEEFPDLPKTLQLLQNAIENQQKIAICGDYDADGMTSTALLIRALSQL 118 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 + IP R+ +GYG N ++E+F +G +IITVD G ++ + A G+ VI+ Sbjct: 119 GADITSAIPSRMQEGYGINNRIVEEFHEQGISIIITVDNGISAVGPVARAKELGLTVIIT 178 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 DHH + + A A++NP L +S L GV +++ + + ++ + + + Sbjct: 179 DHHDLPPKLPNADAILNPKLLPKISPYYGLAGVGVAYILALSLAKLRGEVDSLRW----- 233 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL----------IERVNIS 289 LL+L L T+ D+ PL G+NR ++ +GL + + PG++AL N + Sbjct: 234 QLLELFTLGTIADMAPLNGVNRRWIKRGLKILPQSKIPGVQALIQIAGLANQQPNLNNST 293 Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 +P+ E++G+ +GP INA GRIG + LL +D A + + N R+ + + Sbjct: 294 TPMKPEDIGFRLGPRINAIGRIGNPQVVIELLTTDHMGTALEQAKECEETNLLRKELCAD 353 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + ++A +++Q V+V WH G++G++A+RL E++G P F ++E++ Sbjct: 354 IEQEAIDWYENSNINLEQERVLVPCQKNWHHGVIGIVASRLVERYGVPVFICTYEDEENL 413 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GS R I F + + + F + IL K GGH A G ++ N + +FAH + Sbjct: 414 RGSARGIPEFHVFEALQFC--QDILGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQ 471 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529 P+ +D +N +N L D ++ P G N PVF P ++ ++V +H+ Sbjct: 472 VEHLRPLVNVDVRINLMDINYKLYDQIDKIQPCGIENSEPVFWTPKLRVLHQKIVGKSHI 531 Query: 530 QMTFESQD--------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 ++T T+ AIA+R + L N W Sbjct: 532 KLTLSQDLPPEITMAVLPTISAIAWRWADYF-------PLPSPLDFAYKLRKNTWNNQTA 584 Query: 582 CQLRVLDASPVE 593 +L ++ E Sbjct: 585 IELEIVGVRLPE 596 >gi|331701141|ref|YP_004398100.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus buchneri NRRL B-30929] gi|329128484|gb|AEB73037.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus buchneri NRRL B-30929] Length = 776 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 177/585 (30%), Positives = 276/585 (47%), Gaps = 28/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W + + + I +A++L+ R ++ +DFLNPS+ DP Sbjct: 4 SKYKWQL-DQPADSSVVDKLAKDANIDPFIAKMLIQRGITSADVVEDFLNPSVSAFH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D K RI QA+ N E I ++GDYD DG S +M LS + + YIP+R Sbjct: 62 FLMHDMHKGIERIQQAVENGEHITVYGDYDADGITSTTVMYETLSDLGADVDYYIPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN +K I +G LI+TVD G A+ A DV+V DHH + + AY Sbjct: 122 EGYGPNVEAFQKIIQKGTSLIVTVDNGVAGNQAIAAANELHCDVVVTDHHSLPEKLPDAY 181 Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A+++P N D G LC AGV F V + ++ L+D+ A+ T Sbjct: 182 AIIHPRVKNENGDAYPFGDLCGAGVAFKVAQAL-----------MDEVPSDLIDITAIGT 230 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308 V DVV L NRA V G+ PGL ALI+ I + E++G+ I P +N+ Sbjct: 231 VADVVSLRDENRAIVKFGVQAISNSQRPGLLALIKEAGIDLGRFSEEDIGFGIAPRLNSL 290 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRI ++ +G LL + D LA + N R+ + +A + + DI Q Sbjct: 291 GRIKDATVGVELLSTFDEDRAGELAKFANQQNDLRKSLVDQFFTEA-VQSVEDSGDISQR 349 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF 427 +VV G WH G++G++A+RL +K+ RP+ ++ + + GSGRS++ FD+ + Sbjct: 350 HTLVVVGHNWHQGVLGIVASRLVDKYQRPTIVMTDTDGSEEVKGSGRSVDNFDL--FKAI 407 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + GGH A GLT+++ L D +K A L P I GV+ S Sbjct: 408 DPIRDQTIGFGGHHSAVGLTIKKDKVPVLKDQLEKAAEEQQLDLSVKPKLAIAGVIPVSQ 467 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545 V L D +++ P+G NP P+F +L +++ + HL+ + ++ L AIA Sbjct: 468 VTAVLCDQIKTLAPFGQDNPKPIFQVQFDQLANVKAMGKTSDHLKFSLVQGNNR-LTAIA 526 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + +Q+ + V G + N W QL V D Sbjct: 527 FGRGSAAVE---LQNSQAAVQVVGEIGENTWNNRTTLQLMVDDLK 568 >gi|253681415|ref|ZP_04862212.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum D str. 1873] gi|253561127|gb|EES90579.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum D str. 1873] Length = 586 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 173/599 (28%), Positives = 294/599 (49%), Gaps = 38/599 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + + + +K I DI A+VL NRN+ S + AK FL S+ L P ++ Sbjct: 4 QWRLKVTKCDTKL---LAKKCNISDITAKVLANRNIQSEEEAKKFLRASLEDLY-SPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + I+ AI +KI+++GDYD DG S A++ + L N YIPDR +GY Sbjct: 60 KDMQQGIDIILDAIDEGKKIVVYGDYDADGVTSTAILYKGLLELHANVEYYIPDREAEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + ++ +G +I+T D G ++ + ++ A N G+ VI+ DHH++ ++ Sbjct: 120 GMCSNRIKILKEQGTDIILTCDNGISAVEEVKLAKNLGMKVIITDHHELPFKDEHGKREY 179 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A++NP R D LC AG+ F + +Y + ++K ++L Sbjct: 180 ILPNADAIINPKRNDCKYPFKMLCGAGIAFKFIQALYTNVGIEDKEA-----YKFIELAG 234 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 + T+CDVV L+ NR L + N GLK+LI+ + + + + N+G+MIGP I Sbjct: 235 IGTICDVVDLVEENRIIAKNSLKMISNTTNLGLKSLIDVLGINNKEVKSYNIGFMIGPCI 294 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L LLI++D + + LA L+ LN+ R+ M +E+ V + Sbjct: 295 NATGRLDTAALSVELLITNDEERAKELANILNNLNKTRQEMTMRNVEEIIDVV--ENSSF 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+V+ + H I G++A +++EKF P+ ++ + GSGRSIE +++ Sbjct: 353 KEDKVLVIYKEDIHESIAGIVAGKIREKFNVPTIILT-KGKEMPKGSGRSIEEYNL--FE 409 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L K GGH MAAGL+++ N L + + P KID + Sbjct: 410 ELLKCKDLLDKFGGHPMAAGLSIKEENINELRQRLNENCK--LTDNDIIPKIKIDKRIPL 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 + VN LI +E P+G GN +P+FA N K+ +RV+ L++T D E ++A Sbjct: 468 NIVNDELISEIEVLEPFGKGNSSPLFAEKNVKVSQVRVLGKNQNTLKLTCIINDKEKIEA 527 Query: 544 IAFRVYGT---------PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 I+F + L+ ++ + + +N + G+K QLR+ + Sbjct: 528 ISFNKVNEFKEMIKSKIAFEKILVNCSDLKLDLIFYPIINEFNGNKTVQLRIKYFRLSQ 586 >gi|254824416|ref|ZP_05229417.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL J1-194] gi|293593651|gb|EFG01412.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL J1-194] Length = 783 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + +++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADISV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 ALI LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 ALIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|227512140|ref|ZP_03942189.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus buchneri ATCC 11577] gi|227084534|gb|EEI19846.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus buchneri ATCC 11577] Length = 776 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 186/585 (31%), Positives = 282/585 (48%), Gaps = 28/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S F+W + A+++ I ++A +L+ R VS + A +DFL PS + DP Sbjct: 4 SKFKWQIK-QNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D K RI A+ N E+I ++GDYD DG S +M L+ N + YIP+R Sbjct: 62 YLMHDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLGANVDYYIPNRFS 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN +K IN G LIITVD G +A+ A + DV+V DHH + AY Sbjct: 122 DGYGPNVDAFKKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAY 181 Query: 193 ALVNP---NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A+++P N+ G L AGV V + L D L+D+ A+ T Sbjct: 182 AIIHPRVKNQEGQAYPFGDLSGAGVALKVAQALMEDLPID-----------LIDVAAIGT 230 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308 V D+V L NRA V GL R PGL ALI+ +I S +++G+ I P +N+ Sbjct: 231 VADIVSLKDENRAIVKFGLNAIRNTQRPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSL 290 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRI ++N+G LL + D Q+ LA D N +R+ + +QA V + D + Sbjct: 291 GRIDDANIGVELLSTFDDQKATELAEFADHQNDSRKSLVDEFYQQAVQMVES-SGDAENR 349 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSF 427 S +VV GD WH G +G++A++L EK+GRP+ ++ ++ GSGRS+E FD+ + Sbjct: 350 STLVVVGDDWHQGALGIVASKLVEKYGRPTIVLTSQDGNDQVKGSGRSVESFDL--FSAI 407 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + GGH A GLT+ + L D +K A + L P I ++A Sbjct: 408 DPIRDQTIGFGGHHSAIGLTINKDKISVLKDQLEKAAGDQELDLSQKPTLDIAAKISADQ 467 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIA 545 ++ I L + P+G NP PVF +L ++ + HL+ + ++ L A+A Sbjct: 468 IDNHFIKNLNALAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLV-KNKSRLTAVA 526 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + + + V+G + N W QL V D Sbjct: 527 FGQGAAAGQ---LSNGSASIKVSGEINENTWNNHTTIQLMVSDLK 568 >gi|47097022|ref|ZP_00234595.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes str. 1/2a F6854] gi|284801915|ref|YP_003413780.1| hypothetical protein LM5578_1670 [Listeria monocytogenes 08-5578] gi|284995057|ref|YP_003416825.1| hypothetical protein LM5923_1622 [Listeria monocytogenes 08-5923] gi|47014604|gb|EAL05564.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes str. 1/2a F6854] gi|284057477|gb|ADB68418.1| hypothetical protein LM5578_1670 [Listeria monocytogenes 08-5578] gi|284060524|gb|ADB71463.1| hypothetical protein LM5923_1622 [Listeria monocytogenes 08-5923] Length = 811 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 32 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 88 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E+I+++GDYD DG S+A++M+ L H +A+ YIP+R Sbjct: 89 FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 148 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 149 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 208 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 209 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 257 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 258 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 317 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 318 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 374 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 375 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 432 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +++ GGH MAAGLT+ N L Q+ A + P KI+ + + V++ Sbjct: 433 RDLMMAFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 491 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 492 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 551 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 552 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 600 >gi|240948745|ref|ZP_04753117.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor NM305] gi|240296961|gb|EER47539.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus minor NM305] Length = 572 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 176/562 (31%), Positives = 276/562 (49%), Gaps = 19/562 (3%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + + ++ R+ +R V + L +++ L P L+ ++A +V+A I Sbjct: 15 QLSEHPLLNRLYQSRGV---QSTKELERTLQHLHH-PQQLSGIEQATDLLVEAYEQQANI 70 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 +I GD+D DGA S AL++ L IPDR GYG + + + + L+I Sbjct: 71 IIVGDFDADGATSTALILLALRQMGFQHVEYLIPDRFSQGYGLSLDIANTILEKEVDLVI 130 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S++ + GI V+V DHH + A A+VNPN L GV Sbjct: 131 TVDNGISSFEGIALLKENGIKVLVTDHHLPAEQLPNADAMVNPNLSYCQFPSKSLAGVGV 190 Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 F V++ + +R+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 191 AFYVMLALRSKMREKNLFQGKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLNRIRS 250 Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 G+KAL+E + A +LG+ I P +NA GR+ +LG LL +D+ + Sbjct: 251 GACRVGIKALVEVGKRDLETLQAADLGFAIAPRLNAAGRLENMSLGVELLTADNMEIARQ 310 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA +LD LNQ R+ E M +A A +QA IV+ WH G++G+LA+R Sbjct: 311 LAFELDSLNQTRKEFEQEMKTEALAICAKLPSLAQKEQAHGIVLYQPDWHQGVIGILASR 370 Query: 390 LKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAG 445 +K++F RP A + E + GS RSI G + ++ + ++VK GGHAMAAG Sbjct: 371 IKDQFHRPVIAFAQENEDSPFIKGSARSISGLHMRDLLERIDSHYPELIVKFGGHAMAAG 430 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ + NF + F + + ++ + + DG L A + + ++L+ AGP+G Sbjct: 431 LTIHQDNFLKFQRIFDEKINEMIEPELLQGIIYTDGELQADEFTLEIANLLQQAGPWGQH 490 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P F + ++ R++ HL+M E++ L AI F + + K+ Sbjct: 491 FPEPTFEG-DFRILQQRLLGGKHLKMMVENERGMLLDAIWFNIDVRAFPDM----SVKKA 545 Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587 + L +N ++G+K QLRV Sbjct: 546 KIIYKLDINEFKGNKNLQLRVE 567 >gi|16273133|ref|NP_439370.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae Rd KW20] gi|260581086|ref|ZP_05848907.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae RdAW] gi|1172895|sp|P45112|RECJ_HAEIN RecName: Full=Single-stranded-DNA-specific exonuclease recJ gi|1574144|gb|AAC22867.1| single-stranded-DNA-specific exonuclease (recJ) [Haemophilus influenzae Rd KW20] gi|260092215|gb|EEW76157.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae RdAW] Length = 575 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 168/565 (29%), Positives = 282/565 (49%), Gaps = 20/565 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L ++A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQPQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+D + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCGFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 ++ + R+ + LLDLVAL T+ DVVPL NR +GLM R + Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRIRARHC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHIFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 K+ R + HL+M E Q L AIAF + + + K+ + Sbjct: 495 DGE-FKILDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ QL V P++ Sbjct: 550 YKLEINEFRGNRSLQLLVDYIEPID 574 >gi|257898652|ref|ZP_05678305.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium Com15] gi|257836564|gb|EEV61638.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium Com15] Length = 744 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 170/563 (30%), Positives = 271/563 (48%), Gaps = 30/563 (5%) Query: 33 ITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + V ++L R + FL+P + L DP ++ D DKA RI +A+ + Sbjct: 1 MIRELKLSPFVGKLLWQRGYHEEEDINRFLHPKEQELH-DPYLMHDMDKAISRIQEAVIS 59 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI+++GDYD DG S +M L +++P+R GYGPN S+ ++ I EG Q Sbjct: 60 GEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEHGYGPNQSVYQEKIQEGIQ 119 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 LIITVD G DA+ YA G+DVI+ DHH++ + AYA+V+P L Sbjct: 120 LIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPEKLPDAYAIVHPRHPAGQYPFPDLAG 179 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 GV F V + LDLVA+ T+ D+V L NR V G+ Sbjct: 180 VGVAFKVASALLEE-----------PPAEFLDLVAIGTIADLVSLTDENRILVALGIDAI 228 Query: 272 RRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 GL+AL E + E +G+ I P +NA GR+G+ LL + D +E Sbjct: 229 HHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEAS 288 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + A KL+ +N+ R+ + + E+A A V + + ++ WH G++G++A ++ Sbjct: 289 IQAKKLNEINEERKAIVEQITEEALAMVNKEN------HIHLLVNRGWHEGVLGIVAGKI 342 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + G+P+ ++ +EDG GSGRS+E ++ + + GGH A GLT+ Sbjct: 343 MNETGKPTLVLTLKEDGSAKGSGRSVEALNL--IEMLDQMRDLFTYFGGHHAAVGLTMPS 400 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N L + ++ + L P +ID VL + V + ID L+ P+G NP P Sbjct: 401 ENVTILQEKMNQYIVDRQIDLTRGPELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQ 460 Query: 511 FAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F F + +++ + HL+ + S+ L A+AF E L+ + + V Sbjct: 461 FLFRQVQAANVKRIGANQQHLKFVLSDESSQ-LDAVAFGFGTQE--EELLNNL---VDVV 514 Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591 G L +N W G K+ QL V D + Sbjct: 515 GKLSINEWNGRKKPQLMVSDFAV 537 >gi|291566819|dbj|BAI89091.1| single-stranded-DNA-specific exonuclease [Arthrospira platensis NIES-39] Length = 686 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 167/612 (27%), Positives = 288/612 (47%), Gaps = 35/612 (5%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKD 59 M DQ + E + RW E A ++++ + I+A++L+NR + + + A+ Sbjct: 1 MEDQPTITTEALLPKQRWHIFP--ERPEIAQSLSETTGVHPIIAQILINRGIETTEQAEA 58 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FLNP + L D K + + AI N +KI I GDYD DG S AL++R LS Sbjct: 59 FLNPQSQTLPEPMEEFPDLPKTLQLLQNAIENQQKIAICGDYDADGMTSTALLIRALSQL 118 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 + IP R+ +GYG N ++E+F +G +IITVD G ++ + A G+ VI+ Sbjct: 119 GADITSAIPSRMQEGYGINNRIVEEFHEQGISIIITVDNGISAVGPVARAKELGLTVIIT 178 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 DHH + + A A++NP L +S L GV +++ + + ++ + + + Sbjct: 179 DHHDLPPKLPNADAILNPKLLPKISPYYGLAGVGVAYILALSLAKLRGEVDSLRW----- 233 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL----------IERVNIS 289 LL+L L T+ D+ PL G+NR ++ +GL + + PG++AL N + Sbjct: 234 QLLELFTLGTIADMAPLNGVNRRWIKRGLKILPQSKIPGVQALIQIAGLANQQPNLNNST 293 Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 +P+ E++G+ +GP INA GRIG + LL +D A + + N R+ + + Sbjct: 294 TPMKPEDIGFRLGPRINAIGRIGNPQVVIELLTTDHMGTALEQAKECEETNLLRKELCAD 353 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + ++A +++Q V+V WH G++G++A+RL E++G P F ++E++ Sbjct: 354 IEQEAIDWYENSNINLEQERVLVPCQKNWHHGVIGIVASRLVERYGVPVFICTYEDEENL 413 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GS R I F + + + F + IL K GGH A G ++ N + +FAH + Sbjct: 414 RGSARGIPEFHVFEALQFC--QDILGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQ 471 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529 P+ +D +N +N L D ++ P G N PVF P ++ ++V +H+ Sbjct: 472 VEHLRPLVNVDVRINLMDINYKLYDQIDKIQPCGIENSEPVFWTPKLRVLHQKIVGKSHI 531 Query: 530 QMTFESQD--------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 ++T T+ AIA+R + L N W Sbjct: 532 KLTLSQDLPPEITMAVLPTISAIAWRWADYF-------PLPSPLDFAYKLRKNTWNNQTA 584 Query: 582 CQLRVLDASPVE 593 +L ++ E Sbjct: 585 IELEIVGVRLPE 596 >gi|85373913|ref|YP_457975.1| single-stranded DNA-specific exonuclease [Erythrobacter litoralis HTCC2594] gi|84786996|gb|ABC63178.1| single-stranded DNA-specific exonuclease [Erythrobacter litoralis HTCC2594] Length = 587 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 232/594 (39%), Positives = 332/594 (55%), Gaps = 17/594 (2%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAI-PDIVARVLVNRNVSIDYAKDFLNPSIR 66 GV S+SG W G + + DIV ++L++R V D + P+++ Sbjct: 3 GVSQSLSGKAWRWRGGNMELGD-----GAIGLEDDIVTQLLLSRGVERDDLERHRAPTLK 57 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 +PDP + D D AA RI QAI E I I+GDYDVDGA S AL++R + A Y Sbjct: 58 AFLPDPSVFQDMDNAAERIAQAILAHETITIYGDYDVDGATSSALLIRLIRMLGHEAGHY 117 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDR+++GYGP+ + K G+ LI+TVDCG+ +++AL A + G+DVIV+DHH+ Sbjct: 118 IPDRLLEGYGPSGEALVKLGESGSSLIVTVDCGAMAHEALSMARDAGVDVIVVDHHKCPP 177 Query: 187 EEIPAYALVNPNRLDDLS---GQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSL 241 + P ALVNPNRLD+ GHL A GV FL+ + + R LR+ DL L Sbjct: 178 DLPPTVALVNPNRLDESDLAASHGHLAAVGVAFLLAIALVRTLRERGYFDDRPEPDLRGL 237 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVAL TV DV L GLNRA+V +GL V ++ G+ ALI+ + +LG+ + Sbjct: 238 LDLVALGTVADVASLHGLNRAFVAQGLKVMAKRNTTGMSALIDASRLKRAPACSDLGFAL 297 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGR+GES LG RLL ++D E +A +L LN+ RR +ES + E AE ++ Q Sbjct: 298 GPRINAGGRVGESTLGVRLLTTEDPDEAREIAEQLSRLNEERRAIESEVQEAAEEQLAAQ 357 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFD 420 +V VV G WHPG++G++A R+KEK G+PS I+ + + +G GSGRSI G D Sbjct: 358 ----HNRAVHVVAGHGWHPGVIGIVAGRIKEKTGKPSLVIALDGESAQGKGSGRSIAGVD 413 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + A E +LV GGGHAMAAGLTV+ L D+ + V + +D Sbjct: 414 LGAAIIAARENDLLVAGGGHAMAAGLTVDADKVEALADWLEARLEGPVGRAMAEKAMTLD 473 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 + + L+ L+ AGPYG G P P A + +V HL++ S + + Sbjct: 474 LAVGPRGLTPELVHSLDRAGPYGVGWPGPRVAVGPVHVIKADIVGNDHLRLIAGSVEGGS 533 Query: 541 LQAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L+AIAFR T G+ L+ +RG+R+ + G ++ W +L + DA+ + Sbjct: 534 LKAIAFRAASTDWGQALLHSARGRRLWLAGRARIDDWGARPAAELHLEDAAWAD 587 >gi|167622802|ref|YP_001673096.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella halifaxensis HAW-EB4] gi|167352824|gb|ABZ75437.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella halifaxensis HAW-EB4] Length = 574 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 171/564 (30%), Positives = 272/564 (48%), Gaps = 21/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I+ ++ +R +S + L +R P + ++AA+ I I + I+I Sbjct: 20 FSPILKQIYASRGLSASDCELSLAKLLR-----PDTMAGLEQAAKIIADGIAAQKAILIM 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S ++ + L + IP+R GYG +P ++ ++ A+L+ITVD Sbjct: 75 GDFDADGATSTSVCILALRMMGAQKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + + A G+ V++ DHH A A+VNPN+ + GV F Sbjct: 135 NGISSIEGVAAAKACGMTVVITDHHLPGHTLPDADAIVNPNQDGCGFASKSIAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-AR 272 ++ + LR N +L LLD+VAL TV DVV L NR V GL Sbjct: 195 LMSALRAELRSRNWYLEQGISEPNLAQLLDIVALGTVADVVSLDTNNRILVEAGLQRVKA 254 Query: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 255 GRCRVGITALLEVAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDIMLARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E+ M ++A + + + ++ + I + WH G++G+LA+R+ Sbjct: 315 MASELDGLNAERRDLEADMQQEALKSLESIELNEAELPWGIAIYQADWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 K+K+ RP A + DG+ GS RSI+G + ++ G+++K GGHAMAAGL++ Sbjct: 375 KDKYHRPVIAFAEAGDGEIKGSARSIKGLHMRDLLELINTRHPGLILKFGGHAMAAGLSI 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + F D + K ++ + T DG L + L L SAGP+G P Sbjct: 435 QAGQFALFADAYDKAVREVLAPELLTGELVSDGELVPEQFKLELASELRSAGPWGQSFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F ++ R+V HL++ E++ L AIAF V + +Q V Sbjct: 495 PLFDGY-FRVIQQRIVGEKHLKLILETECGRVMLDAIAFNVDLKTWPDATIQYA----QV 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L VN +RG++ QL V P Sbjct: 550 VYKLDVNEFRGNQSLQLMVEQIEP 573 >gi|227544987|ref|ZP_03975036.1| recombination protein J [Lactobacillus reuteri CF48-3A] gi|300909978|ref|ZP_07127438.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri SD2112] gi|112944334|gb|ABI26346.1| single-stranded DNA-specific exonuclease [Lactobacillus reuteri] gi|227185030|gb|EEI65101.1| recombination protein J [Lactobacillus reuteri CF48-3A] gi|300892626|gb|EFK85986.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri SD2112] Length = 775 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 162/578 (28%), Positives = 273/578 (47%), Gaps = 21/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 F+W L + ++ I I+A +L + + + AK F PS+ + DP + Sbjct: 6 FKW-ELADNASSVTVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIH-DPTL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QA+ E+I I+GDYD DG S +LM L N N Y+P+R DG Sbjct: 64 LHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN ++ I+ G QL ITVD G + + + G+DV++ DHH++ ++ A A+ Sbjct: 124 YGPNMDAYQRLIDNGTQLFITVDNGVSGKNVIDKVIAAGVDVVITDHHELPADLPNAVAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P L GV F V + + LDLVA+ + DVV Sbjct: 184 VHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPVEE-----------LDLVAIGEIADVV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 + N A + G+ R+ PGL AL++ +I + +T +++G+ I P +NA GRI + Sbjct: 233 NVTDENHALISYGIQQLRQGMRPGLAALMKLADIKANNLTDQDIGFGIAPRLNALGRIAD 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N G +LL S D E + LA ++D N+ R+ + + ++++AE + QQ +++ Sbjct: 293 ANDGVKLLTSLDENESQKLAKEVDQANKERQNLVAEIMKEAEKQA--NSSANQQKRTLLI 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++A+R+ + G+P+ S +++ + G + + Sbjct: 351 VGKGWHQGVLGIVASRIMNETGKPTIVASTDQNNPTLIKGSGRSIDSFNLFNALEAHREL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH A GL+ ++ N L ++ A I L + V L Sbjct: 411 FITFGGHPAACGLSFDQKNIVPLQIALEEEAVKQKFDPTVKQPLPIAMKLVPADVTQQLY 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTP 552 + ++ P+G GN PVF N K+ ++ + H + F D + L +AF Sbjct: 471 NDIQRVAPFGPGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSDKKNLTVVAFGQGNLA 530 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L+ + ++++ + +N WRG K QL + D Sbjct: 531 ---TLLSAPTGQINLAVKVSLNEWRGKKSVQLMLEDLQ 565 >gi|226945985|ref|YP_002801058.1| single-stranded-DNA-specific exonuclease RecJ [Azotobacter vinelandii DJ] gi|226720912|gb|ACO80083.1| single-stranded-DNA-specific exonuclease RecJ [Azotobacter vinelandii DJ] Length = 569 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 173/561 (30%), Positives = 273/561 (48%), Gaps = 18/561 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ + L+P L + A +V+A+ +I+ Sbjct: 17 DLPPLLTRLYAARGV---QSAAELDKGLAQLLPY-RRLKGIEAAVALLVEALRERRRILF 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + +P+R GYG P ++ + +L++TV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAEHVDYLVPNRFEYGYGLTPEIVAVALERRPELLVTV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSLDGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCDFPSKALAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR+ +L LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLLALRARLRELGWFAGRNEPNLAELLDLVALGSVADVVPLDANNRILVHQGLARIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGL+AL+ IT+ +LG+++GP +NA GR+ + +LG L+ +D + + Sbjct: 253 RARPGLRALLGVAGRDPRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDEELAREM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A++LD LNQ+R+ +E M +A A++ + + + + WH G++G+LA+RLKE Sbjct: 313 AVQLDQLNQDRKAIEQGMQREALAQLRELPVE-ELPFGLCLFEPDWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + D GS RS+ GF I + A + G++ K GGHAMAAGL++ R Sbjct: 372 RYHRPAIAFADAGDDLLKGSARSVPGFHIRDALDAVAARQPGLISKFGGHAMAAGLSLPR 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + A DG L + ++ L L AGP+G P P+ Sbjct: 432 ENFAAFAAAFDAEVRRQLRADDLNGRLLSDGPLGIAEFHLDLARALRQAGPWGQHFPEPL 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L R+V HL++ S+ L AIAF + + + Sbjct: 492 FHGT-FQLVQQRLVGERHLKLVVRSECGVLQLDAIAFNIDREQWP----NPAVRWAELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L VN +RG + QL V+ Sbjct: 547 RLDVNEYRGQESVQLVVVHIE 567 >gi|52425594|ref|YP_088731.1| RecJ protein [Mannheimia succiniciproducens MBEL55E] gi|52307646|gb|AAU38146.1| RecJ protein [Mannheimia succiniciproducens MBEL55E] Length = 591 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 167/561 (29%), Positives = 282/561 (50%), Gaps = 18/561 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ +R++ L+ ++ ++ P L D+A + ++ A +K++I G Sbjct: 38 DPLLDRLYRSRHIKNSQQ---LDRTLHSMLA-PNQLQGIDQAVQLLITAREKQQKVIIVG 93 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + ++ E + +G +L+ITVD Sbjct: 94 DFDADGATSTALTVSALRQLGFTDVDYLVPNRFEQGYGLSVAVAEMALAKGVELLITVDN 153 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S D + + +G+ V++ DHH A A+VNPN D L GV F + Sbjct: 154 GVSSLDGVAFLKGRGVRVLITDHHLPPEILPAADAIVNPNLADCHFPSKALAGVGVAFYL 213 Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + LR+ + + LLDLVAL T+ DVVPL NR +GL + + Sbjct: 214 MLALRAKLRESGEFNEKTQPNFTELLDLVALGTIADVVPLDQNNRILAHQGLARIRAERC 273 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++ALIE N S ++A +LGY I P +NA GR+ ++G LL++D ++ LA+ Sbjct: 274 RYGIRALIEVANKDISQLSASDLGYSIAPRLNAAGRLDNMSVGVELLLADSMEQARALAL 333 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M +A + + I + WH G++G+LA+R+K++ Sbjct: 334 ELDGLNQTRKEIEQGMKAEALEICRNLTALKTELPTGIALYQADWHQGVLGILASRIKDQ 393 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + +++G GS RSIEG + + ++VK GGHAMAAGLT++ Sbjct: 394 FHRPVVAFAQDQNGLLKGSARSIEGLHMRDALERINTLYPDMIVKFGGHAMAAGLTIKEE 453 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F F + + + + + DG L + +N+ ++L+ AGP+G P P+F Sbjct: 454 LFADFQRSFNQVVTDWLDKDMLQGIVWTDGDLPQTMMNMNTAELLKQAGPWGQAFPEPIF 513 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 ++ R+V HL+M E AIAF + + +++ + Sbjct: 514 DGE-FRILQQRLVGEKHLKMLVEPVNGGPLFDAIAFNIDTRYYPDLSIRTAV----LAYK 568 Query: 571 LCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 569 LEINEFRGNRDVQLLVDYIQP 589 >gi|290580163|ref|YP_003484555.1| putative single-strand DNA-specific exonuclease [Streptococcus mutans NN2025] gi|254997062|dbj|BAH87663.1| putative single-strand DNA-specific exonuclease [Streptococcus mutans NN2025] Length = 734 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 276/583 (47%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + + +K + A++L R + + + FL P + L DP Sbjct: 4 SKYAWKINEKKPDDG-FFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI +AI +E+I+I+GDYD DG S ++ L Y+P+R Sbjct: 62 FLLNDMDKAVTRIRRAIETNERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G +DA+ YA QG+DVIV DHH + +E A Sbjct: 122 DGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQGQGVDVIVTDHHSMPAELPSA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P D L GV F + + + +LDLVA+ T+ Sbjct: 182 YAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL+ LI + I E +G+ + P +NA GR Sbjct: 231 DMVSLTDENRVMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E + +A ++ N+ R+ + A+ E+A V + SV Sbjct: 291 LDDPNPAVELLTGFDDEEAKTIAAMINEKNEERKTIVQAIFEEAMTLV------DENKSV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WH G++G++A R+ E+ +P ++ E+G GS RS+E +I + Sbjct: 345 QVLAKEGWHAGVLGIVAGRIMEQINQPVIVLN-IENGIAKGSARSLESVNI--FNALDAH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + + GGHA AAG+T+E L + L ID L +++ Sbjct: 402 RDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE+ P+G N P+F + ++ +R + HL++ + +AF Sbjct: 462 DTLKGLETLAPFGMDNKKPIFLLRDFTVKQVRTMGQNGAHLKLKVAQEQ-AVFDLLAFN- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 YG+ + EF + + + + L VN W G+ QL ++DA Sbjct: 520 YGSLVTEF---QQAQHLELAVTLSVNRWNGNTSLQLMLVDARV 559 >gi|254828241|ref|ZP_05232928.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL N3-165] gi|258600629|gb|EEW13954.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL N3-165] Length = 783 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E I+++GDYD DG S+A++M+ L H +A+ YIP+R Sbjct: 61 FLFAEMDLAVARIKQAIERNELILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADSAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +++ GGH MAAGLT+ N L Q+ A + P KI+ + + V++ Sbjct: 405 RDLMMVFGGHPMAAGLTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|186684853|ref|YP_001868049.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme PCC 73102] gi|186467305|gb|ACC83106.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme PCC 73102] Length = 715 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 170/632 (26%), Positives = 298/632 (47%), Gaps = 64/632 (10%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW + A + + I++++L+NR + + + A+ FL P L++P Sbjct: 16 LPNQRWQIYPQKPEF--AQKLAVLINVSPIISQLLINRGMETPEQAQAFLEPE-SLVLPS 72 Query: 72 P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P D + + AI + KI I GDYD DG S AL++R L + IP R Sbjct: 73 PLEDFPDLAISLELLQNAIASQTKIAICGDYDADGMTSTALLLRSLRTLGAQVDYAIPSR 132 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N ++E+F +EG LI+TVD G ++++ + A G+ VI+ DHH + + P Sbjct: 133 MHEGYGINKRIVEEFHSEGVGLILTVDNGISAFEPVARARELGLAVIITDHHDIPQKLPP 192 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP + + S + GV +++ V + + L + + + +L L L T+ Sbjct: 193 ANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGETKGL-----IQPMLALFTLGTI 247 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP------------------- 291 D+ PL G+NR +V +GL + G++ALI+ + + Sbjct: 248 ADLAPLTGVNRRWVKRGLQHLPKSNLAGIQALIQVGGVQARGEERAGGAGEQGSRGAGEE 307 Query: 292 ---------------------ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + E++G+ +GP INA GRIG LL +DD Sbjct: 308 IANTSTSLSTSPKSKIQNPKSLKPEDIGFRLGPRINAIGRIGNPQTVIELLTTDDMGVAL 367 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAAR 389 AM+ + +N +R+ M + ++A A V ++ +QQ V++V WH G++G++A+R Sbjct: 368 ERAMQCEQINASRQEMCQQIEQEAIAYVESEFVTSLQQDRVLIVVQPNWHHGVIGIVASR 427 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449 L E++G P F ++E+ GS RSI F++ + + + +L K GGH A G ++ Sbjct: 428 LVERYGVPVFIGTYEDGEHIRGSARSIPEFNVFEALEYCH--DLLGKYGGHKAAGGFSLP 485 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 N + +FA+ + P+ KID +N +N L L + P G NP+P Sbjct: 486 AENLQMVRSRLIEFANQCLEPQHLKPLLKIDAEVNLDQINQQLYQQLNALHPCGMDNPDP 545 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFE---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 VF N ++ ++V H+++T ++AIA+R G++ R+ Sbjct: 546 VFWTANVQVVEQKIVGKGHIKLTIAQTIDNQDYRIKAIAWR-----WGDYFRLPP--RVD 598 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHF 597 V L NY+ G+ +L ++ P++ F Sbjct: 599 VAYKLRENYFNGNTTIELELIGVRLPIQIQKF 630 >gi|217964328|ref|YP_002350006.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes HCC23] gi|217333598|gb|ACK39392.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes HCC23] gi|307571106|emb|CAR84285.1| single-stranded-DNA-specific exonuclease [Listeria monocytogenes L99] Length = 783 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 176/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREIMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKVT---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLIELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|224499814|ref|ZP_03668163.1| hypothetical protein LmonF1_09064 [Listeria monocytogenes Finland 1988] Length = 783 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 174/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E+I+++GDYD DG S+A++M+ L H +A+ YIP+R Sbjct: 61 FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +++ GGH MAAGLT+ N L Q+ A + P KI+ + + V++ Sbjct: 405 RDLMMAFGGHPMAAGLTLLAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|269140270|ref|YP_003296971.1| ssDNA exonuclease RecJ [Edwardsiella tarda EIB202] gi|267985931|gb|ACY85760.1| ssDNA exonuclease RecJ [Edwardsiella tarda EIB202] gi|304560097|gb|ADM42761.1| Single-stranded-DNA-specific exonuclease RecJ [Edwardsiella tarda FL6-60] Length = 577 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 IP ++ R+ NR V L ++ L+ L ++A + +A+ +++I Sbjct: 22 IPPLLRRLYGNRGVRSA---AELERGVKGLLSY-QQLNGIERAVTLLQEALAQRLRLVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L + +P+R DGYG +P ++E+ GA+LI+TVD Sbjct: 78 GDFDADGATSTALSVLALRAMGCDSVQYLVPNRFEDGYGLSPEVVEQAAAMGAELIMTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A+VNPN D L GV F Sbjct: 138 NGVSSHAGVEAAHARGIRVLVTDHHLPGETLPAAEAIVNPNLADCDFPSKSLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + R L + +L LLDLVAL TV DVV L NR V +GL R Sbjct: 198 LMLALRRHLVEQGWFEQLGRPAPNLADLLDLVALGTVADVVALDTNNRILVHQGLSRIRA 257 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E + +TA +LG+ +GP +NA GR+ + +LG LL+SDD + Sbjct: 258 GRCRPGIRALLEVAKRDALRLTASDLGFALGPRLNAAGRLDDMSLGVALLLSDDMPQARA 317 Query: 332 LAMKLDVLNQNRRLMESAMLEQAE-AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA LD LNQ RR +E M +A + Q + + WH G+VG+LA+R+ Sbjct: 318 LACDLDTLNQTRREIEQGMQSEALAICAGLERTLTQLPYGLALYHPEWHQGVVGILASRI 377 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KE+F RP A + +G GSGRS+ G + + G++ K GGHAMAAGLT+ Sbjct: 378 KERFYRPVIAFAPAGEGLLKGSGRSLPGLHMRDALERLDTQHPGLMQKFGGHAMAAGLTI 437 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E F F + + V DG L++ + + + ++L GP+G P Sbjct: 438 EATRFDDFRHHFDELVGEWLDPAQLEGVVWSDGALSSDELTLPVAELLRDGGPWGQAFPE 497 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P F ++ R+V HL++ E L IAF V + + + + + Sbjct: 498 PTFDGQ-FRILQQRLVGERHLKLMLEPLGGGPLLDGIAFNVDTALWPD----ASVREVEL 552 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL + P Sbjct: 553 AYRLDINEYRGNRSVQLMIQHLWP 576 >gi|303253936|ref|ZP_07340057.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae BS455] gi|302599112|gb|EFL66137.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae BS455] Length = 740 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 179/591 (30%), Positives = 286/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W E N I +K + VAR+L R + + + K FL PS+ L DP + Sbjct: 6 YEWQFASQVEDAN-FTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|254410884|ref|ZP_05024662.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus chthonoplastes PCC 7420] gi|196182239|gb|EDX77225.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus chthonoplastes PCC 7420] Length = 652 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 171/586 (29%), Positives = 285/586 (48%), Gaps = 21/586 (3%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 RW +A + Q + ++ +VL+NR D A +L P MP P+ Sbjct: 3 NQRWQI--SSANPEKANQLAQGTGLSPLLGQVLLNRGFDTVDQAMVYLYPE-SQAMPSPM 59 Query: 74 -ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 D + + +AI +EKI I GDYD DG S AL++R L + IP R+ Sbjct: 60 DEFPDLAISVEMLKEAIAENEKIAICGDYDADGMTSTALLLRALRWLGADVEYGIPSRMK 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N ++E+F NEG +I+TVD G ++DA+ A G+ VI+ DHH + E A Sbjct: 120 EGYGINTRIVEEFANEGVGIILTVDNGIAAHDAIARAVELGLMVIITDHHDLPPELPNAD 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP +L + S L GV +++ V + + L Q + LL+L L T+ D Sbjct: 180 AILNPKQLPESSPYRSLAGVGVAYILAVTLAQDLGQLQGLTS-----QLLELFTLGTIAD 234 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---ITAENLGYMIGPSINAGG 309 + PL +NR ++ +GL + G++ALI+ +S + E++G+ +GP INA G Sbjct: 235 LAPLTDINRRWLKRGLQRLPKSQLAGIQALIQMSGVSEDQIALKPEDIGFKLGPRINAVG 294 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + + LL + D+ AM+ + +NQ R+ + + + E+A A + T+ + QQ Sbjct: 295 RLADPQIVIELLTTSDAGIALERAMQCEQINQKRQQLCAEIEEEAIALIETEALNWQQQR 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+V+ WH G++G++A+RL E++G P F ++E++ + G + + + Sbjct: 355 VLVLVQPDWHHGVIGIVASRLVERYGVPVFIGTYEDENQEHIRGSARGIPEFHVFEALQF 414 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +L K GGH A G ++ N FAH + P+ ID N + + Sbjct: 415 CHDLLGKFGGHQAAGGFSLPSENLTAFQTQLSHFAHQCLEPEHLKPLVAIDTEANFNQIT 474 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRV 548 L ++ P G GNP+P+F PN ++ R+V HL++T D + L AIA+R Sbjct: 475 YNLYQQIDRLHPCGIGNPDPIFWTPNVRVVEQRLVGKGHLKLTLSGFDGTKQLNAIAWR- 533 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 GE+ + + L N W G+ +L ++ E Sbjct: 534 ----WGEYF--PLPSTVDIAYKLKDNAWNGTVTIELELVGIRVSES 573 >gi|325977986|ref|YP_004287702.1| single-stranded-DNA-specific exonuclease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177914|emb|CBZ47958.1| single-stranded-DNA-specific exonuclease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 735 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 177/593 (29%), Positives = 288/593 (48%), Gaps = 34/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S + W ++ + N +T+K + ++ +++L +R V + FL+ + L DP Sbjct: 4 SKYNWKNIEKEPD-NGFFELTKKEKLTELASQILYSRGVDTVEKLTQFLSTDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S ++M L A +Y+P+R Sbjct: 62 YLLHDMDKAVERIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A+ YA +QG+DVIV DHH + +E A Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQSQGVDVIVTDHHGLPAELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + +L GV F V + + +LDLVA+ T+ Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL L++ ++ + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A ++ N+ R+ + + E+A + V + V Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQKIFEEAMSMVDLE------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGLAKGSARSIEAINI--FHALDEH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+ GGHA AAG+T+ N +L + L ID VL S +++ Sbjct: 402 RGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE P+G NP PVF + ++ R + HL++ +Q + + +AF Sbjct: 462 DTVHSLEKLAPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 + + + + L +N W G QL + DA VEG + Sbjct: 521 GHL----AQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568 >gi|228472316|ref|ZP_04057082.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga gingivalis ATCC 33624] gi|228276519|gb|EEK15243.1| single-stranded-DNA-specific exonuclease RecJ [Capnocytophaga gingivalis ATCC 33624] Length = 569 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 274/580 (47%), Gaps = 31/580 (5%) Query: 18 WVSLLG---QEGINRALAITQKHAI---PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 W L E A A+ Q I +A +L+ R + +++ AK F NPS+ L Sbjct: 7 WNFLPTPQQNEVETLASALFQVQEILPWHRTIASLLLQRGIATVEQAKTFFNPSLSDLF- 65 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P ++ D D+A RI+ A+ + E+I+I+GDYDVDG SVAL+ FLS Y+PDR Sbjct: 66 NPFLMKDMDRAVERILLAMAHKERILIYGDYDVDGTCSVALLYLFLSKIYPEVAYYVPDR 125 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +GYG + ++ + LIIT+DCG ++D + YA +GID+I+ DHH P Sbjct: 126 YREGYGVSCEGIDFAQDNEMSLIITLDCGIKAHDKVFYARERGIDMIITDHHTPDDTIPP 185 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP R D LC G+ F ++ + + L + LDLVALAT Sbjct: 186 AVAVLNPKRTDCSYPYKELCGCGIGFKLIQALCKSLG-----YPLETAYAYLDLVALATC 240 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 D+VP+ G NR V GL + + ++ L+ N PI +L ++ P INA GR Sbjct: 241 ADIVPITGENRILVSVGLKQINERPSEVMQLLLSTAN--PPIQVRDLVFVAAPRINAAGR 298 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + ++ LI + +E + L+ N R+ + + ++A +++ + A Sbjct: 299 MNHASRAVDFLIGESMEEATL----LEHFNTQRKTADEQITQEALSQI--LGSHEEDAPA 352 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV WH G++G++A+RL E + RP+ + + S RS+ GF++ + Sbjct: 353 TVVFSPHWHKGVIGIVASRLTEIYYRPTIVFTQSGE-VLAASARSVRGFNLYEA--LCEC 409 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + L++ GGH AAG+T+ N+ R FQ +P + +P I + + Sbjct: 410 KDELIQFGGHTAAAGMTLLPENYQRFKLKFQAVVDRTLPQELRSPTIMISARMPLHVITS 469 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFR 547 + L+ P+G N P+F +S+ +V +HL+M + AI F Sbjct: 470 SFYRCLQRFSPFGPKNMTPIFQADEVIAKSVSLVGSDRSHLRMILTDTSLKQEFVAIGFG 529 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + GK + L N+WRG+ QL V Sbjct: 530 LGHKKEA----VESGKPFTIAYELSENHWRGTTSLQLVVK 565 >gi|56696609|ref|YP_166970.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria pomeroyi DSS-3] gi|56678346|gb|AAV95012.1| single-stranded-DNA-specific exonuclease RecJ [Ruegeria pomeroyi DSS-3] Length = 551 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 224/558 (40%), Positives = 321/558 (57%), Gaps = 9/558 (1%) Query: 33 ITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS 92 + Q+ +P V +VL R V A+ FL+P ++ L+PDP L D + AA R + A+ Sbjct: 1 MRQQTDLPQAVCQVLARRGVPAIEARGFLDPKLKELLPDPRKLKDMEIAAARFLAAVAGR 60 Query: 93 EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152 ++I +F DYDVDG +S AL++ +L A +Y+PDRI +GYGPN M G L Sbjct: 61 QRIAVFADYDVDGGSSAALLICWLREMGQTATLYVPDRIDEGYGPNEVAMADLAR-GHDL 119 Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I+ VDCG+ S+ + A +G DVIV+DHH A+VNPNR D+ G+ CAA Sbjct: 120 IVCVDCGTLSHGPI--AAAKGADVIVLDHHLGAETLPECVAVVNPNRQDESGDLGYFCAA 177 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 GVVFL+LV R LR + DL+++LDLVALATV DV PLI NRA V +GL V Sbjct: 178 GVVFLMLVEAGRQLRARGQ--RGPDLMAMLDLVALATVADVAPLIEANRALVRQGLKVMA 235 Query: 273 RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 ++ PGL AL + + + +LG+++GP +NAGGRIG+++LG+RLL +D E + L Sbjct: 236 QRQRPGLVALADIARMDAMPNTYHLGFLLGPRVNAGGRIGQADLGARLLSTDSMSEAQAL 295 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD+LN RR +E+A+ A + T+ + A ++ G+ WHPG+VG++A+RLKE Sbjct: 296 AERLDLLNTERREIEAAVRAAALDQAETRGLE---APLVWAAGEGWHPGVVGIVASRLKE 352 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452 RP+ I F + +G GSGRS+ G D+G + EG+LVKGGGH MAAGLTV R Sbjct: 353 SANRPAIVIGF-DGDEGKGSGRSVAGVDLGASIQRLAAEGLLVKGGGHKMAAGLTVLRDR 411 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 + + ++DGVL A + L++ +E AGPYGA P P FA Sbjct: 412 LEPAMERLSELLAKQGAGQGGPADLRLDGVLMPGAATVELLEQIELAGPYGASAPAPRFA 471 Query: 513 FPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 P+ +++ + V +HL+++ L AI F + +G L G R H G L Sbjct: 472 LPDLQIRFAKRVGASHLKLSLADGMGGGLDAILFGAFDGEIGPILENHGGARFHFAGRLE 531 Query: 573 VNYWRGSKRCQLRVLDAS 590 +N W G + QLRV D + Sbjct: 532 INSWGGRQSVQLRVDDVA 549 >gi|199597083|ref|ZP_03210515.1| Single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus HN001] gi|258508593|ref|YP_003171344.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus rhamnosus GG] gi|199591887|gb|EDY99961.1| Single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus HN001] gi|257148520|emb|CAR87493.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus rhamnosus GG] gi|259649900|dbj|BAI42062.1| single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus GG] Length = 764 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 167/585 (28%), Positives = 275/585 (47%), Gaps = 27/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + +RW Q ++Q A+P +A +L R + + F++P I L DP Sbjct: 2 TQYRWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKDKAEYEAFVHPDISRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI ++KI I+GDYDVDG S ++M+ L +++IPDR Sbjct: 60 FALHDMDKAVARILEAIEQNQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G D + A G+DV+V DHH++ A Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGADVIDPAQAAGMDVVVTDHHELPETLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVKLTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPDTVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + S + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEEDVAADLAQQVGKLNQERQGLVSKIAQEALTMA--QTPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E G+P+ ++ +DG GSGRSI + + + A Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGDTAKGSGRSIAAYHLFNALEPA-- 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E +V GGH MA GLT + + + A ++ + P I L + + Sbjct: 405 EDKMVHFGGHHMAVGLTAKTAELSAIHAQMEAAAATMLK-TVPKPALPIAARLEVGDLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 ++ P+G GNP P F+ +Q+++ + + + F+ + I F Sbjct: 464 EHYQLIRQLAPFGQGNPEPTFSVRPQVVQNVKPIGKENAHLRFQIDQG--VNVIGFGFG- 520 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + L N W+G+ QL + D + + Sbjct: 521 ---SAAATLAEAQAIKLAVQLDQNTWQGNTSLQLMLKDYAVKQPQ 562 >gi|15602057|ref|NP_245129.1| hypothetical protein PM0192 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720413|gb|AAK02276.1| RecJ [Pasteurella multocida subsp. multocida str. Pm70] Length = 573 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 172/575 (29%), Positives = 281/575 (48%), Gaps = 20/575 (3%) Query: 28 NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87 RA+ + + + ++ R+ R + L+ ++ L+ P L + A VQ Sbjct: 7 RRAVPLGEAVSSDPLLDRLYRARQIQHPQQ---LDRTLAALLH-PQQLDGIEAAVTLFVQ 62 Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFI 146 A EKI+I GD+D DGA S AL + L IP+R GYG + ++ E+ + Sbjct: 63 AYKQQEKIVIVGDFDADGATSTALAVLALRQLGFTQVAFLIPNRFEQGYGLSIAVAEQAL 122 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 + QL++TVD G +S + + + QG+ V++ DHH ++ A A+VNPN Sbjct: 123 EKDVQLLMTVDNGVSSVEGVAFLKAQGVKVLITDHHLPPTQLPDADAIVNPNLSSCAFPS 182 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 L GV F +++ + R+ + LLDLVAL T+ DVVPL NR Sbjct: 183 KALAGVGVTFYLMLALRAKFRELGIFNQQTQPNFTDLLDLVALGTIADVVPLDQNNRILA 242 Query: 265 VKGL-MVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLI 322 +GL + + G++AL E N ++ +LG+ + P +NA GR+ ++G LL+ Sbjct: 243 YQGLARIRAERCRCGIRALAEVANRDMRQLSTSDLGFSLAPRLNAAGRLDNMSVGVELLL 302 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHP 380 ++D LA++LD LNQ R+ +E M +A ++ Q +QQ I + WH Sbjct: 303 AEDMASARALALELDGLNQTRKEIEQGMKLEAL-EICRQLTALQQTLPFGIALYQADWHQ 361 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGG 438 G++G++A+R+K+ F RP A + E+ G GS RS+EG + + + +++K G Sbjct: 362 GVLGIVASRIKDHFHRPVVAFAQEQAGILKGSARSVEGLHLRDALERIHCLYPDMILKFG 421 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLT++ F F + + + + DG L++ +++ + L+ Sbjct: 422 GHAMAAGLTIQESRFADFQQAFNQIVGDWLDEGQRQGIVWTDGELDSVQLSLTTAECLKE 481 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFL 557 AGP+G P PVF K+ R+V HL+M E Q L AIAF V + Sbjct: 482 AGPWGQAFPEPVFDGE-FKILQQRLVGEKHLKMMVEPKQGGPLLDAIAFNVDTRYYPDLS 540 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + K + L +N +RG++ QL V P+ Sbjct: 541 I----KLAKLAYKLDINEFRGNRHLQLLVDYIVPI 571 >gi|328465562|gb|EGF36791.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes 1816] Length = 783 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|47094196|ref|ZP_00231911.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes str. 4b H7858] gi|47017423|gb|EAL08241.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes str. 4b H7858] Length = 725 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|226224126|ref|YP_002758233.1| single-stranded-DNA-specific exonuclease (RecJ) [Listeria monocytogenes Clip81459] gi|225876588|emb|CAS05297.1| Putative single-stranded-DNA-specific exonuclease (RecJ) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 783 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 288/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAVDLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|126665069|ref|ZP_01736052.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter sp. ELB17] gi|126630439|gb|EBA01054.1| single-stranded-DNA-specific exonuclease RecJ [Marinobacter sp. ELB17] Length = 583 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 286/565 (50%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P I+ R+ R V+ D + ++R L PL L D+A + +AI ++++I Sbjct: 28 DLPPILRRLYAARGVTSDDQLSY---TLRHL-ASPLQLRGIDRAVELLAEAIEKQQRVLI 83 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN--EGAQLII 154 GD+D DGA S A+ + L + + +P R DGYG P ++ + LI+ Sbjct: 84 LGDFDADGATSTAVALLGLGMLGLKHVDFKVPSRFSDGYGLTPGIIYRLQEDGPLPDLIV 143 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G + + ++ A G+ V+V DHH E A A+VNPN+ + GV Sbjct: 144 TVDNGIAAVEGVRAARELGMLVVVTDHHLAGDELPQADAIVNPNQPGCEFISKNAAGVGV 203 Query: 215 VFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +F VL + + LR+ ++P +L +LLDLVAL TV DVVPL NR +V +GL R+ Sbjct: 204 MFYVLTALRKHLREQGRLPDPEPNLGTLLDLVALGTVADVVPLDHNNRIFVEQGLRRIRQ 263 Query: 274 QG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG+ AL+E I++ +LG+++GP +NA GR+ + ++G L++ E Sbjct: 264 GKTRPGILALLEVAGRDHTAISSTDLGFVVGPRLNAAGRLDDMSVGIACLLASSPDEARR 323 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARL 390 LA +LD N+ RR +E M QA+ + + D++ + WH G++G+LAAR+ Sbjct: 324 LAQELDTFNRERRTIEKDMKVQAQDLLASMSLDLEGLPWGLALFDPDWHQGVIGILAARI 383 Query: 391 KEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLT 447 +E+ RP+ A + +E+G+ GS RSI G I ++ A G+L K GGHAMAAG+T Sbjct: 384 REQTNRPTVAFASDENGEDIKGSARSIPGLHIRDALAVVDARHPGLLKKYGGHAMAAGMT 443 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + + + F K + + A DG L+AS +N+ +L+ AGP+G P Sbjct: 444 LAAGDLEAFSNAFDKAVRDKLTAADLEAAITTDGPLSASELNLDTAALLKRAGPWGQHFP 503 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + S R+V HL++ + + + IAF G+ + ++ + Sbjct: 504 EPLFDGE-FSVVSQRIVGQNHLKLVLQPTEGGNIIDGIAFN-TGSEVPDYTHTG----VR 557 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 V N +RG QL + P Sbjct: 558 VVYKPDANTFRGRTNLQLMIDYLEP 582 >gi|46907753|ref|YP_014142.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes serotype 4b str. F2365] gi|46881022|gb|AAT04319.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes serotype 4b str. F2365] Length = 783 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|56459932|ref|YP_155213.1| hypothetical protein IL0824 [Idiomarina loihiensis L2TR] gi|56178942|gb|AAV81664.1| Single-stranded DNA-specific exonuclease [Idiomarina loihiensis L2TR] Length = 570 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 187/557 (33%), Positives = 287/557 (51%), Gaps = 17/557 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 P ++ ++ R V L+ L+ L D KA + A+ N K+ I G Sbjct: 22 PPLLRQIYARRGVRRADE---LSLKASGLLH-FSSLRDIGKAVELLQNALKNQAKVCICG 77 Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S ALM+ L + +P+R+ DGYG + +++E+ E QLI+TVD Sbjct: 78 DFDADGATSSALMVSALQAFGLQQVGYRVPNRMTDGYGLSVAMVEQLAVENVQLIVTVDN 137 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G ++DA+ A +GI V+V DHH E PA A+VNPN+ +L GV F V Sbjct: 138 GIAAHDAIVLAREKGIQVLVTDHHLPPEELPPANAIVNPNQHGCEFSSKNLAGVGVAFYV 197 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 L+ + LR+ PL +L LDLVAL TV DVVPL NR V +G+ R+ P Sbjct: 198 LLALRSALREQGVEPL-PNLADWLDLVALGTVADVVPLDYNNRVLVQQGIARIRKGMSRP 256 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G+KAL+E N S + A +LG+ +GP INA GR+ + LG L++ + + LA +L Sbjct: 257 GIKALLEVANRDASQLAASDLGFALGPRINAAGRLDDIGLGIECLLAGE-TRAQQLAQQL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDI-QQASVIVVEGDRWHPGIVGLLAARLKEKFG 395 + LNQ R+ +E+ M E AE+ V C D Q ++ + WH G++G++A R+KE+ Sbjct: 316 NDLNQQRKSIETEMREHAESAVAKLCFDQGQVPDLVTLYQPDWHAGVIGIVAGRVKEQVN 375 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNF 453 RP A++ ++D GS RS+ G + ++ + GI+ + GGHAMAAGLT+++ N Sbjct: 376 RPVIALANDDDEFLKGSARSVSGLHMRDLLERVHSLQPGIMERFGGHAMAAGLTMKKENL 435 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 R + ++ A + VF DG L + +++ ++ L+SAGP+G P P+F Sbjct: 436 TRFSELAEQVASEWLSEEQKQRVFWSDGELTTTQLSLDSVNTLQSAGPWGQQFPEPMFDG 495 Query: 514 PNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 +L R+V HL++ E L AIAF V + + + + Sbjct: 496 Q-FELVDQRIVGERHLKLVVRHPQGELLDAIAFNVDTQQWP----ARQASVVELLYKPQL 550 Query: 574 NYWRGSKRCQLRVLDAS 590 N++RG QL V Sbjct: 551 NHFRGRTNVQLLVEQIR 567 >gi|227328399|ref|ZP_03832423.1| ssDNA exonuclease RecJ [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 587 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 182/573 (31%), Positives = 277/573 (48%), Gaps = 29/573 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ R V L S+ L+ + +L+ DKA + + I+I Sbjct: 22 VPPLLRRLYAQRGVKGAQE---LERSLSGLL-NYRLLSGIDKAIDLLQHTLAEKRCIVIV 77 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L VN +P+R +GYG +P ++ + GA++I+TVD Sbjct: 78 GDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVVAQAAALGAEVIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S+ ++ A +GI V+V DHH A A++NPN D L GV F Sbjct: 138 NGISSHAGVEDAHRRGIAVLVTDHHLPGEILPAADAMINPNLPDCQFPSKALAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKVPLN---------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 +++ ++ LR + +L LLDLVAL TV DVVPL NR V +GL Sbjct: 198 LMMALFVRLRDSDWFTQPFFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGL 257 Query: 269 MVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R PG++AL+E N S + + +LG+ IGP +NA GR+ + +G LL+S+D Sbjct: 258 NRIRAGECRPGIRALLEVANRDASQLVSSDLGFAIGPRLNAAGRLDDMTVGVELLLSNDI 317 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGL 385 + MLA LD LNQ+RR +E M +A + + + + + WH G+VG+ Sbjct: 318 TQARMLANDLDALNQDRREIEQGMQVEALRLCESLERTRTELPYGLAMYHPEWHQGVVGI 377 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMA 443 LA+R+KE+F RP A + DG GSGRSI G + + G++ K GGHAMA Sbjct: 378 LASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMA 437 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-IALIDMLESAGPY 502 AGL++ F F + + V DG L ++ ++ +ML AGP+ Sbjct: 438 AGLSLHEDRFDDFRQRFGELVGEWLDPSQLEGVVWSDGELALPELDLLSTAEMLRYAGPW 497 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE----TLQAIAFRVYGTPLGEFLM 558 G P P F ++ R++ HL+ FE + L IAF V T + Sbjct: 498 GQAFPEPTFDGC-FRILQPRLLKERHLKAMFEPIGATGAVPLLDGIAFNVDTTIWPD--- 553 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 K + + L +N +RG + QL + P Sbjct: 554 -PSIKEVEMVYRLDINEFRGKRSVQLMIQHLWP 585 >gi|306825702|ref|ZP_07459041.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432063|gb|EFM35040.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 759 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 176/591 (29%), Positives = 281/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 25 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 82 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 83 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 142 Query: 135 YGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ +A + G+DVIV DHH + AYA Sbjct: 143 YGPNTSVYKYFIEQEWISLIVTVDNGVAGHEAIDFAQSMGVDVIVTDHHSMPETLPDAYA 202 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 203 IVHPEHPDADYPFKCLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 252 VSLTDENRIMVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 311 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+A V + V V Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKAMV------DPEKKVQV 365 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ ED + GS RS+E DI + Sbjct: 366 LANEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDDRAKGSARSVEAVDI--FEALDPHRD 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVCEKGADASGKNKLNLDEELDLETLSLET 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + ++S R + AHL++ D + + +AF Sbjct: 483 VKSFERLAPFGMDNQKPVFYIRDFNVESARTMGAGNAHLKLKISKGD-ASFEVVAFGQGS 541 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 542 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 587 >gi|229495842|ref|ZP_04389568.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas endodontalis ATCC 35406] gi|229317155|gb|EEN83062.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas endodontalis ATCC 35406] Length = 581 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 173/585 (29%), Positives = 276/585 (47%), Gaps = 25/585 (4%) Query: 17 RWVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ E I+ + + + + +V R+LV R + + D A+ F +P + L DP + Sbjct: 4 KWIWKPLTDEEISTSNELIAELKLAPVVGRLLVKRGIRTADEARHFFSPKLEDLH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRI 131 + D DKA RI +A+ E I+++GDYDVDG +V+L+ +FL + YIPDR Sbjct: 63 MKDMDKAVERINKALGKKENILVYGDYDVDGTTAVSLVYKFLRQSGCSDHQLHYYIPDRN 122 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYG + +++ G +LII +DCG + + + YA + GID IV DHH A Sbjct: 123 DDGYGVSKQGIDRAHELGVKLIIVLDCGIKAIEEIAYAKSLGIDFIVCDHHTPDGVLPDA 182 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+++P R D+ L G+ F ++ N L SLLDLVA++ Sbjct: 183 VAVLDPKRADNTYPFEELSGCGIGFKLMQAFA-----INNNIRMRRLYSLLDLVAVSIAS 237 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 DVV +G NR GL R +PGL+ +I N + I ++ + IGP INA GR Sbjct: 238 DVVSTLGENRILAYFGLQQLNRNPSPGLRGIINICNLANEEIDMSSIVFKIGPMINASGR 297 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + LLIS D +E E +++ N+ RR ++ + +A V + ++ + Sbjct: 298 MMDGKKTVDLLISRDIEEAEEKCLEIVQYNEQRRELDKQITREAVRFV-EEFKPHKKYKI 356 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 IV+ +WH G++G++A+RL E++ RP +S E K GS RS GFD+ + Sbjct: 357 IVIHKPQWHKGVIGIVASRLAEQYARPVVVLS-GEGDKVSGSARSYGGFDMYHAIEHC-- 413 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L GGH AAGLT+ + Q +A V A P +ID VL+ + Sbjct: 414 RDLLTNFGGHPYAAGLTLSEDKVEEFTERIQHYAEENVYAKQFNPEIEIDAVLSLVEITK 473 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVNLAHLQMTFESQDSETL----QAIA 545 +L L+ GP+G NP P+F + + V + E DS + IA Sbjct: 474 SLHKNLQKMGPFGPDNPKPIFMTRFLFDTGTSKAVGKNGEHIKLEMTDSPQMFQVKSGIA 533 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + + N + G+ Q+ V D Sbjct: 534 YGLS----SHISYIKSYRPFSICYTVEENDYYGTSSIQILVKDIK 574 >gi|270293185|ref|ZP_06199396.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. M143] gi|270279164|gb|EFA25010.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. M143] Length = 744 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 174/591 (29%), Positives = 280/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 10 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI QAI E I+I+GDYD DG S ++M L +Y+P+R DG Sbjct: 68 LHDMEKAVERIRQAIEEGENILIYGDYDADGMTSASIMKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIKQEGISLIVTVDNGVAGHEAIELAQAMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIGLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ E+G+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEEGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEKLSDLSQILEDYVREKGSDAGGKNKLNLDEELDLETLSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + ++S R + HL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNTHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|257878184|ref|ZP_05657837.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,230,933] gi|257889618|ref|ZP_05669271.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,410] gi|257892441|ref|ZP_05672094.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,408] gi|260559230|ref|ZP_05831416.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium C68] gi|257812412|gb|EEV41170.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,230,933] gi|257825978|gb|EEV52604.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,410] gi|257828820|gb|EEV55427.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium 1,231,408] gi|260074987|gb|EEW63303.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium C68] Length = 744 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 174/563 (30%), Positives = 272/563 (48%), Gaps = 30/563 (5%) Query: 33 ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + V ++L R + FL+P + L DP ++ D DKA RI +A+ + Sbjct: 1 MIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPYLIHDMDKAISRIQEAVIS 59 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI+++GDYD DG S +M L +++P+R GYGPN S+ ++ I EG Q Sbjct: 60 GEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEHGYGPNQSVYQEKIEEGIQ 119 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 LIITVD G DA+ YA G+DVI+ DHH++ AYA+V+P L Sbjct: 120 LIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYAIVHPRHPAGHYPFPDLAG 179 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 GV F V + LDLVA+ T+ D+V L NR V G+ Sbjct: 180 VGVAFKVASALLEE-----------PPAEFLDLVAIGTIADLVSLTDENRILVSLGIDAI 228 Query: 272 RRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 GL+AL E + E +G+ I P +NA GR+G+ LL + D +E Sbjct: 229 HHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEAS 288 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + A KL+ +N+ R+ + + ++A A V + + ++ WH G++G++A ++ Sbjct: 289 VQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHLLVNRGWHEGVLGIVAGKI 342 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + G+P+ ++ +EDG GSGRSIE ++ + GGH A GLT+ Sbjct: 343 MNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRDLFTYFGGHHAAVGLTMPS 400 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N L + ++ + L+ P +ID VL + V + ID L+ P+G NP P Sbjct: 401 ENVTILQEKMNQYIVDHQIDLMRGPELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQ 460 Query: 511 FAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F F + ++I+ + HL+ S+ L A+AF +GT E L ++ V Sbjct: 461 FLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FGTQEEELLNN----QVDVV 514 Query: 569 GHLCVNYWRGSKRCQLRVLDASP 591 G L +N W G K+ QL V D S Sbjct: 515 GKLSINEWNGRKKPQLMVSDFSV 537 >gi|119486080|ref|ZP_01620142.1| single-stranded-DNA-specific exonuclease [Lyngbya sp. PCC 8106] gi|119456855|gb|EAW37983.1| single-stranded-DNA-specific exonuclease [Lyngbya sp. PCC 8106] Length = 708 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 163/619 (26%), Positives = 281/619 (45%), Gaps = 57/619 (9%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 + RW + Q +A + + + ++A+VL+NR + A FL+P + L Sbjct: 15 LPNQRWHLVPPQP--EKAQQLAEATQLSPLLAQVLINRGFDTVEEAVIFLDPETQALPAP 72 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 L D K+ + AI +KI I GDYD DG S AL++R LS + + IP R+ Sbjct: 73 INELPDLAKSVEFLHDAILQHQKIAICGDYDADGMTSTALLIRALSSLGADVSYAIPSRM 132 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++E F EG +L++TVD G ++Y+ + A G+ VI+ DHH + PA Sbjct: 133 KEGYGINNRIIEDFHQEGIRLVLTVDNGISAYEPIAKARELGLTVIITDHHDLPPLLPPA 192 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A++NP + + S L GV +++ + + + + + + + LL+L L T+ Sbjct: 193 HAILNPKLIPETSPYRGLAGVGVAYVLAISLAQKMGK-----VQGLVNPLLELFTLGTIA 247 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--------------------ISSP 291 D+ L G+NR +V +GL G++ALIE Sbjct: 248 DLAALTGVNRRWVKRGLQRLMSSQIEGVQALIEVAGLSGSQVSESSKTEEIEGNRKNFKT 307 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 I E++G+ +GP INA GRI + + LL +++ AM+ + +NQ R+ + + Sbjct: 308 IKPEDIGFRLGPRINAVGRIADPQIVIELLTTENMGIALERAMQCEQINQQRQQLCEQIE 367 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-------- 403 ++A A D + V+V+ WH G++G++A+RL E++G P F ++ Sbjct: 368 QEAIAWCENSNIDFTKERVLVIVQPEWHHGVIGIVASRLVERYGVPVFIGTYETEKENED 427 Query: 404 ----EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 + GS R I F++ + + + +L K GGH A G + + N + Sbjct: 428 NSSEKPAPMIRGSARGIPEFNVFEALQYC--TDLLGKFGGHKAAGGFSFQAENLDQFRQR 485 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 +FAH + PV K+D N +N L ++ P G N P+F PN ++ Sbjct: 486 LSQFAHQCLEIEHLKPVVKVDVQANLKQINFELYHQIDQLHPCGIENDPPIFWTPNVRIV 545 Query: 520 SIRVVNLAHLQMTFESQDSE--------TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 + V H+++T TL+AIA+R ++ + L Sbjct: 546 KQKTVGKGHIKLTLSQDSRSDHKIAALPTLEAIAWRWEDYF-------PLPTQLDIAYKL 598 Query: 572 CVNYWRGSKRCQLRVLDAS 590 N W+G +L ++ Sbjct: 599 RTNDWQGQTSLELEIVGVR 617 >gi|238917314|ref|YP_002930831.1| single-stranded-DNA-specific exonuclease [Eubacterium eligens ATCC 27750] gi|238872674|gb|ACR72384.1| single-stranded-DNA-specific exonuclease [Eubacterium eligens ATCC 27750] Length = 571 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 176/587 (29%), Positives = 290/587 (49%), Gaps = 34/587 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W + AI ++ I ++AR++ NR + + + +LN ++ M P +L Sbjct: 4 NWKVYTKKADF---KAIGERFGIDQVMARIIRNRGLETDEQINMYLNGTVDD-MHSPHLL 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DK + I+ +KI I GDYD+DG S ++ + L + +PDRI+DGY Sbjct: 60 KDADKCVDILTDKIHAGKKIHIIGDYDIDGICSTTILYKGLKAAGADVTFAVPDRIIDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190 G N L+++ N G IIT D G + + ++YA +G+ VIV DHH + + + Sbjct: 120 GINEHLIDEAYNNGTDTIITCDNGIAAIEQIKYAKEKGMTVIVTDHHDIPFDFVDGEKIH 179 Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+VNP + D LC AGV F V+ ++Y L + DL +L+A Sbjct: 180 KVPQADAIVNPKQEDCPYPFDKLCGAGVAFKVIKILYERLGLN-----PIDLEEYAELMA 234 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +AT+ DVV L NR V GL N G++AL+E + I++ ++G++IGP + Sbjct: 235 IATIGDVVDLSDENRVIVKYGLKHLAVTSNIGIRALVEACELEIDKISSYHIGFVIGPCL 294 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL++ D ++ A++L LN R+ + A +V + ++ Sbjct: 295 NATGRLDSARRAIELLLTTDMEDARKKALELRTLNVERKDITEEYAAIAIEQV--ENTEL 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+VV H + G++A R++EKF RPS I+ EDG GSGRSIEG+++ + + Sbjct: 353 KDDKVLVVYLPECHESVAGIIAGRVREKFYRPSIVITKAEDG-AKGSGRSIEGYNMFEEI 411 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 S +L K GGH MAAG++++ + + + + TP ID + Sbjct: 412 SKC--GKLLNKYGGHPMAAGISLDIDKIDEFRKALNE--NQTMTENVLTPTVWIDVPMPV 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 V+I LI E P+G GN PVFA N ++ V+ L+ ES+ + + A Sbjct: 468 DYVDIKLIKQFEKLQPFGKGNEKPVFADRNLTVRQSAVIGKNKNVLRCQLESEHGKLVTA 527 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F++ G + E G+++ + + +N + G Q R+ D Sbjct: 528 IRFKLDGQEIPEV-----GRKISMVYYPDINEYNGIVSIQFRIEDWR 569 >gi|322374747|ref|ZP_08049261.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. C300] gi|321280247|gb|EFX57286.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. C300] Length = 743 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 176/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 10 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPNAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIRKKGADASGKNKLNLDEELDLETLSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + ++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|296107040|ref|YP_003618740.1| single-stranded-DNA-specific exonuclease [Legionella pneumophila 2300/99 Alcoy] gi|295648941|gb|ADG24788.1| single-stranded-DNA-specific exonuclease [Legionella pneumophila 2300/99 Alcoy] Length = 579 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 180/570 (31%), Positives = 279/570 (48%), Gaps = 23/570 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ + R +S + L+ ++ L+P L ++A R+ A+ + ++I+I Sbjct: 17 NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R GYG P+++E LIITV Sbjct: 73 IGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S++ + A GIDV++ DHH A A+VNPN+ L + GV+F Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + R L N ++ S LDLVAL TV DVV L NR V +G+M R Sbjct: 193 YVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + Q G+KALIE S + +LG+ I P +NA GR+ + +LG LI+ D + Sbjct: 253 QGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386 +LD LN RR +ES M EQA + + ++ + + WH G++G+L Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKTWHQGVIGIL 372 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A R+KEK+ RP A + + + GS RS+ +I +++ G+++K GGHAMAA Sbjct: 373 AGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GL++ F + DG L + +N+ +++ AGP+G Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELNLETAQLIQQAGPWGQ 492 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 PVF ++ R+V HL+MT SQ E L AIAF V R K Sbjct: 493 AFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWP----NHRIK 547 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +H L +N+++G R QL + +PV+ Sbjct: 548 YVHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577 >gi|197334470|ref|YP_002155206.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio fischeri MJ11] gi|197315960|gb|ACH65407.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio fischeri MJ11] Length = 579 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 177/571 (30%), Positives = 283/571 (49%), Gaps = 25/571 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ R ++ L + L+ + KA +V+AI N +I++ Sbjct: 18 SIPPILQRIYAARGITSS---SQLERGAKFLL-SFQSMHGISKAVDILVEAIQNQTRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + N + +P+R DGYG +P ++++ GA++I+TV Sbjct: 74 VGDFDADGATSSALSVMAFRMMGSQNVDYLVPNRFEDGYGLSPDVVDQAKEMGAEIIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A+VNPN L GV F Sbjct: 134 DNGVSSIDGVLKAKEYGMQVVVTDHHLPGAHLPLADAIVNPNLEACAFPSKSLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ I LR+ N +L LLDLVAL TV D+V L NR V +G+ R Sbjct: 194 YLMLAIRARLREINWFEKQNIAIPNLADLLDLVALGTVADLVALDENNRILVHQGIQRIR 253 Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++ALIE N S I A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKCRPGIQALIEVANRVPSRIVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLE--QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M E A + L + +V+ WH G++G+LA+ Sbjct: 314 RMAAELDSLNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DG GS RSI GF + + G+++K GGHAMAAGL Sbjct: 374 RIKEKYHRPVIAFADGGDGFIKGSCRSIAGFHMRDALDLIDTRNPGLILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ ++ + F V + DG L + +++ + GP+G Sbjct: 434 TIKETDYKKFSQAFDDVVRESVEEEALKGIVLSDGALTPEEFTLGTAEIIRAGGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ + R+V HL++ E ++ + AIAF + + + Sbjct: 494 PEPIFDGE-FKVLNQRLVGEKHLKLMLEPIHRDFPTNKMVDAIAFNIDVRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +++ + L +N +RG++ QL V + P+ Sbjct: 549 VQKVKLAYRLDINEFRGNQTLQLMVENIEPL 579 >gi|296876220|ref|ZP_06900273.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parasanguinis ATCC 15912] gi|296432725|gb|EFH18519.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parasanguinis ATCC 15912] Length = 741 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W LA+ +K + VA +L R + + + +DFL P + L DP Sbjct: 4 SKYDWQLASPSAD-EAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI +AI + E+I+I+GDYD DG S ++M L +Y+P+R Sbjct: 62 YLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G A+ A G+DVIV DHH + A Sbjct: 122 DGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P D +L GV F + + + + LLDLVA+ T+ Sbjct: 182 YAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVP-----------VDLLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL V + GL+ L+E I + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ + N+ R+ + A+ ++A+ V S Sbjct: 291 LDDPNPAIELLTGFDDEEAHEIAIMIHQKNEERKEIVQAIYDEAKTMV------DPSLSA 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P +S EDG+ GS RS E +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVVVLS-IEDGRAKGSARSPESVNI--FEALDPY 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + + GGHA AAG+T+E L F L + ID L+ + + + Sbjct: 402 RSLFIAFGGHAGAAGMTLEVDQLPALSQALTDFIAEQEIDLSSKSSLDIDEELHLTELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + + P+G N PVF N K++ R + HL++ +D T + +AF + Sbjct: 462 ETLKSFDRLSPFGMDNKKPVFLVRNFKVEGARSMGAGNTHLKLKISQED-ATFEVVAFGL 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ + + + L VN W G QL ++DA F + Sbjct: 521 GSLEA----EFAQAQDLELAVQLSVNQWNGQTTLQLMLVDARVDGVQLFNVR 568 >gi|326406133|gb|ADZ63204.1| single-stranded-DNA-specific exonuclease [Lactococcus lactis subsp. lactis CV56] Length = 742 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 168/579 (29%), Positives = 269/579 (46%), Gaps = 34/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 + W L I +KH + ++ +RVL R + + + FL PS+ L DP + Sbjct: 6 YDWKVADT-AISEDFLKIAKKHKLDELTSRVLYQRGIHAEAEIEQFLKPSLENLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI+ AI E I+I+GDYD DG + ++M L A +Y+P+R DG Sbjct: 64 LHDMEKATGRILSAIEQGENILIYGDYDADGMTASSVMKSALDELGAEAQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + + +I LIITVD G +A+ +A G+DVIV DHH + + PAYA Sbjct: 124 YGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPPAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F V + +LDLVA+ T+ D+ Sbjct: 184 IVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAP-----------SEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L++ + IT E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D E +A +D N R+ + + +A + + + V + Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDE-------PVQI 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A RL E +P ++ +EDG GS RSIE FDI + Sbjct: 346 LYHKDWHKGVLGIVAGRLLEAIHKPVIMLA-QEDGILRGSARSIENFDI--FKALNAHRE 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAG+T+ N + + + + +I + ++++ Sbjct: 403 LFIAFGGHKQAAGMTLSLENVEAVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLST 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 I L P+G NP P F ++K+ R + HL++ + ++ + + A+ F+ Sbjct: 463 ITNLAKLAPFGMDNPKPRFLIEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L Q++ + L N W G+ QL + DA Sbjct: 522 EELEFEQAQTK-----LVATLSSNSWNGNTSLQLMIEDA 555 >gi|288905018|ref|YP_003430240.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus gallolyticus UCN34] gi|288731744|emb|CBI13305.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus gallolyticus UCN34] Length = 735 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 176/593 (29%), Positives = 287/593 (48%), Gaps = 34/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S + W ++ N +T+K + ++ +++L +R V + FL+ + L DP Sbjct: 4 SKYNWKNIEKGPD-NGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S ++M L A +Y+P+R Sbjct: 62 YLLHDMDKAVERIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A+ YA +QG+DVIV DHH + +E A Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQSQGVDVIVTDHHGLPAELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + +L GV F V + + +LDLVA+ T+ Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL L++ ++ + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELMKVSDVDMADVNEETVGFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A ++ N+ R+ + + ++A + V + V Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQEIFDEAMSMVDLE------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGLAKGSARSIEAINI--FHALDEH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+ GGHA AAG+T+ N +L + L ID VL S +++ Sbjct: 402 RGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE P+G NP PVF + ++ R + HL++ +Q + + +AF Sbjct: 462 DTVHSLEKLEPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 + + + + L +N W G QL + DA VEG + Sbjct: 521 GHL----AQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568 >gi|326387430|ref|ZP_08209039.1| single-stranded-DNA-specific exonuclease RecJ [Novosphingobium nitrogenifigens DSM 19370] gi|326208086|gb|EGD58894.1| single-stranded-DNA-specific exonuclease RecJ [Novosphingobium nitrogenifigens DSM 19370] Length = 592 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 236/590 (40%), Positives = 329/590 (55%), Gaps = 15/590 (2%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68 ++ S+SG W G + ++V ++L+ R V P++R Sbjct: 7 IDQSLSGQAWRWRGGNMDVAADNP--GNLG-DNLVDQLLLARGVERSDLDRHRRPTLRDF 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +PDP I D DKAA R+ AI +E I ++GDYDVDGA S AL++R L+ C V A YIP Sbjct: 64 LPDPSIFRDMDKAATRLADAIGRNEAIAVYGDYDVDGATSAALLVRLLASCGVRARPYIP 123 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 DR+++GYGP + + EGA LI+TVDCG+ +Y+AL A + G++VIV+DHH+ +E Sbjct: 124 DRLLEGYGPTGEALVRLGAEGASLIVTVDCGAMAYEALAMAADAGVEVIVVDHHKCAAEL 183 Query: 189 IPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243 A ALVNPNRLD+ GHL A G+ FL+ V R LR DL+SLLD Sbjct: 184 PRAMALVNPNRLDESDEAAAFGHLAAVGMAFLLAVATLRELRARGFFGDRRPPDLMSLLD 243 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVAL TV DV L GLNRA V +GL V R+ N GL ALI+ ++ T +LG+ +GP Sbjct: 244 LVALGTVADVAQLRGLNRALVAQGLKVLARRENTGLAALIDASRLNRSPTCSDLGFALGP 303 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GRIG+S+LG RLL + D E +A +L LN RR +E A+ E AE + Q Sbjct: 304 RINAAGRIGDSSLGVRLLTTADPDEARDIAARLSELNDERRGIEQAVQEAAETALARQ-- 361 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS--FEEDGKGIGSGRSIEGFDI 421 + +V V+ G+ WHPG++G++A R+KEK G+P+ I+ +E G G GSGRSI G D+ Sbjct: 362 --EGRAVHVLSGEGWHPGVIGIVAGRIKEKTGKPTVVIALDADEAGNGKGSGRSIAGVDL 419 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G V A E G+LV GGGHAMA GLT+ F ++ V ID Sbjct: 420 GAAVIAAREAGLLVAGGGHAMACGLTIAPDRLEEFHTFLEERLTRDVARARAAQTLLIDL 479 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L + L++ L++AGP+G G P P A +L +V H++M +D + Sbjct: 480 SLTPGGLTPDLVETLDAAGPFGVGWPGPRVAVGPVRLIKCDLVGTDHVRMVAAGRDGRSF 539 Query: 542 QAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AIAFR T LG+ L+ G+ + G ++ W +L V DA+ Sbjct: 540 KAIAFRAATTDLGQALLHGYHGRHFWLAGRARIDDWASRPAAELHVEDAA 589 >gi|87200288|ref|YP_497545.1| single-stranded-DNA-specific exonuclease RecJ [Novosphingobium aromaticivorans DSM 12444] gi|87135969|gb|ABD26711.1| exonuclease RecJ [Novosphingobium aromaticivorans DSM 12444] Length = 573 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 237/559 (42%), Positives = 334/559 (59%), Gaps = 12/559 (2%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 DIV ++L++R V + P++R +PDP I D D AARR+ AI + E+I I+G Sbjct: 16 DDIVTQLLLSRGVGREDLDRHRRPTLRDFLPDPSIFQDMDNAARRLTDAILSGERITIYG 75 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYDVDGA S AL++R L V+A YIPDR+++GYGP+ + + EG+ LI+TVDCG Sbjct: 76 DYDVDGATSAALLIRLLRELGVDAGHYIPDRLLEGYGPSGEALVRLAREGSNLIVTVDCG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG---QGHLCAAGVVF 216 + +++AL A +G+DVIV+DHH+ E A ALVNPNRLD+ GHL A GV F Sbjct: 136 AMAHEALAAAAAEGVDVIVVDHHKCAPELPRAAALVNPNRLDECDEAAAHGHLAAVGVAF 195 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 L+ V R LR DL++LLDLVAL TV DV L GLNRA V +GL + R+ Sbjct: 196 LLAVATVRELRGRGFFDGRKAPDLMALLDLVALGTVADVAQLKGLNRALVSQGLKIMARR 255 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 N GL ALI+ +S T +LG+ +GP INAGGR+GE+ LG RLL ++D +E ++ Sbjct: 256 ENVGLSALIDASRLSRAPTCSDLGFALGPRINAGGRVGEATLGVRLLTTEDPEEARAISA 315 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 +L LN RR +E A+ E AEA+V Q +V+V+ G WHPG++G++A R+KEK Sbjct: 316 QLSRLNDERRAIEQAVQEAAEAQVDAQ----HNRAVMVLAGSGWHPGVIGIVAGRIKEKT 371 Query: 395 GRPSFAIS--FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452 G+P+ I+ +E G G GSGRSI G D+G + A E G+LV GGGHAMA GLT+E Sbjct: 372 GKPTLVIALDADEAGHGKGSGRSISGVDLGAAIIAAREAGLLVAGGGHAMACGLTIEPSA 431 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 RL D+ + V A ++ +D L+ + L++ LE+AGP+G G P P A Sbjct: 432 LSRLADWLDERLSRDVTAAQSSQALLLDLSLSPGGLTPDLVETLEAAGPFGVGWPGPRVA 491 Query: 513 FPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ-SRGKRMHVTGHL 571 +L +V H++M D + +AIAFR + LG+ L+ SRG++ + G Sbjct: 492 VGPVRLVKCDLVGTDHVRMVAAGADGRSFKAIAFRAAQSELGQVLLNASRGRQFWLAGRA 551 Query: 572 CVNYWRGSKRCQLRVLDAS 590 ++ W +L V DA+ Sbjct: 552 RIDDWASRPAAELHVEDAA 570 >gi|254931460|ref|ZP_05264819.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes HPB2262] gi|293583012|gb|EFF95044.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes HPB2262] gi|328474886|gb|EGF45686.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes 220] gi|332311967|gb|EGJ25062.1| Single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes str. Scott A] Length = 783 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 289/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEGAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 572 >gi|59711057|ref|YP_203833.1| ssDNA exonuclease RecJ [Vibrio fischeri ES114] gi|59479158|gb|AAW84945.1| ssDNA exonuclease, 5' --> 3'-specific [Vibrio fischeri ES114] Length = 579 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 176/571 (30%), Positives = 282/571 (49%), Gaps = 25/571 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +IP I+ R+ R ++ L + L+ + KA +V+AI +I++ Sbjct: 18 SIPPILQRIYAARGITSS---SQLERGAKFLL-SFQSMHGISKAVDILVEAIQKQTRIIV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + N + +P+R DGYG +P ++++ GA++I+TV Sbjct: 74 VGDFDADGATSSALSVMAFRMMGSQNVDYLVPNRFEDGYGLSPDVVDQAKEMGAEIIMTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A+VNPN L GV F Sbjct: 134 DNGVSSIDGVLKAKEYGMQVVVTDHHLPGAHLPLADAIVNPNLEACAFPSKSLAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ I LR+ N +L LLDLVAL TV D+V L NR V +G+ R Sbjct: 194 YLMLAIRARLREINWFEKQNIAIPNLADLLDLVALGTVADLVALDENNRILVHQGIQRIR 253 Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG++ALIE N S I A + G+ +GP INA GR+ + + G LL+S++ Sbjct: 254 AGKCRPGIQALIEVANRVPSRIVASDFGFALGPRINAAGRLDDMSFGVELLMSNNIHAAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLE--QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A +LD LNQ R+ +E M E A + L + +V+ WH G++G+LA+ Sbjct: 314 RMAAELDSLNQTRKEIEQGMKEEAMAICERLEFGAQSELPFGLVLFQRDWHQGVIGILAS 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R+KEK+ RP A + DG GS RSI GF + + G+++K GGHAMAAGL Sbjct: 374 RIKEKYHRPVIAFADGGDGFIKGSCRSIAGFHMRDALDLIDTRNPGLILKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ ++ + F V + DG L + +++ + GP+G Sbjct: 434 TIKEADYKKFSQAFDDVVRESVEEEALKGIILSDGALTPEEFTLGTAEIIRAGGPWGQAF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-----QDSETLQAIAFRVYGTPLGEFLMQSR 561 P P+F K+ + R+V HL++ E ++ + AIAF + + + Sbjct: 494 PEPIFDGE-FKVLNQRLVGEKHLKLMLEPIHRDFPTNKMVDAIAFNIDVRRWPD----AS 548 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +++ + L +N +RG++ QL V + P+ Sbjct: 549 VQKVKLAYRLDINEFRGNQTLQLMVENIEPL 579 >gi|116495040|ref|YP_806774.1| single-stranded DNA-specific exonuclease [Lactobacillus casei ATCC 334] gi|227534949|ref|ZP_03964998.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105190|gb|ABJ70332.1| exonuclease RecJ [Lactobacillus casei ATCC 334] gi|227187406|gb|EEI67473.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 764 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 169/592 (28%), Positives = 282/592 (47%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 + ++W Q A+++ +P +A +L+ R ++ F++P L DP Sbjct: 2 TQYQWQLAP-QPAAADEHALSETLNVPPFLATLLLQRGINDQADYDAFVHPDTSRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI +EKI I+GDYDVDG S A+M+ L + +++IPDR Sbjct: 60 FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G + A G+DV+V DHH++ ++ A Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + + + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E G+P+ ++ +DG+ GSGRSIE + + K + A E Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +V GGH MA GLT + + + + A ++ + P I L + + + Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPITTRLEDADLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 ++ P+G GNP PVF+ +Q+++ + HL+ + + I F Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQVIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + + L N W+G QL + D + + Sbjct: 520 GDA----AETLATAQAVKLAVQLDQNTWQGHTSLQLMLKDYEVKQPQVIDWR 567 >gi|78188581|ref|YP_378919.1| RecJ exonuclease [Chlorobium chlorochromatii CaD3] gi|78170780|gb|ABB27876.1| exonuclease RecJ [Chlorobium chlorochromatii CaD3] Length = 568 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 168/579 (29%), Positives = 273/579 (47%), Gaps = 19/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +RW + E A+++ + +AR L NR +S + AK+F P + L P + Sbjct: 4 YRWKCFMPHE--ETVAALSESINVSQPIARALCNRGISTYNEAKEFFRPVLSTLH-SPWL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D ++A R+V+A+ N E I+++GDYDVDG VAL++ FL H V +I DR +G Sbjct: 61 FNDMERAVERLVRALKNGETILLYGDYDVDGTTGVALLLLFLRHHGVEPLWHINDRFAEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG +P +++ I G L+ITVDCG + A++ G++VIV DHH+ AYA+ Sbjct: 121 YGLSPEGIDRVIASGTTLLITVDCGIKDHAAIRRCGEHGVEVIVCDHHEA-DVTPEAYAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + LC V F ++ + L V LDLVA+AT D+V Sbjct: 180 LNPKVVGSGYPFRELCGCAVAFKLVQALAERLGDSEAVWH-----QFLDLVAVATAADLV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V++GL R + + + +S + +L + I P INA GR+ Sbjct: 235 SLTGENRTLVIEGLQQMRSKPRKNFSEMFRVMKVSLGDVRMFHLAFGIAPRINAAGRMHS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++L L++ +E L+ +N RR ++S ++ QA+ V + C S IV+ Sbjct: 295 AHLALEWLLASAPDAVEQHTEALERVNVQRRSLDSTIMSQADKMVESHCASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A++L +K+ P+ + G GS RSIEG +I ++ Sbjct: 353 YDEAWHLGVLGIVASKLIDKYYLPTVVLGGMN-GLVRGSVRSIEGLNIHAVLQHC--SHH 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT++ N F + N + V +ID V+ + I Sbjct: 410 LEQFGGHHQAAGLTLKPENLAVFRKAFDEQCANQLTIEQRQKVMEIDAVVELEQITDKFI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +LE PYG GN P+F +L R++ H++ + + I F Sbjct: 470 AVLEQFAPYGIGNREPLFMSERLQLAEPARLLKERHVKFAVRDKQKRRFEVIGFNRPD-- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + L + + + + W G + QL + D Sbjct: 528 IYNDLRAVKHPTITMLYTIERRQWNGMWQVQLLLKDLEV 566 >gi|307710651|ref|ZP_07647084.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis SK564] gi|307618594|gb|EFN97737.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis SK564] Length = 740 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 176/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 6 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA R+ QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERVRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEILPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPVIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADATGKNKLNLDEELDLERLSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|15672614|ref|NP_266788.1| single-stranded DNA specific exonuclease [Lactococcus lactis subsp. lactis Il1403] gi|12723535|gb|AAK04730.1|AE006296_4 single-stranded DNA specific exonuclease [Lactococcus lactis subsp. lactis Il1403] Length = 742 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 168/579 (29%), Positives = 269/579 (46%), Gaps = 34/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 + W L I +KH + ++ +RVL R + + + FL PS+ L DP + Sbjct: 6 YDWKVADT-AISEDFLKIAKKHKLDELTSRVLYQRGIHAEAEIEQFLKPSLENLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI+ AI E I+I+GDYD DG + ++M L A +Y+P+R DG Sbjct: 64 LHDMEKATGRILSAIEQGENILIYGDYDADGMTASSVMKSALDELGAEAQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + + +I LIITVD G +A+ +A G+DVIV DHH + + PAYA Sbjct: 124 YGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPPAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F V + +LDLVA+ T+ D+ Sbjct: 184 IVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAP-----------SEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L++ + IT E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D E +A +D N R+ + + +A + + + V + Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDE-------PVQI 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A RL E +P ++ +EDG GS RSIE FDI + Sbjct: 346 LYHKDWHKGVLGIVAGRLLEAIHKPVIMLA-QEDGILRGSARSIENFDI--FKALNAHRE 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAG+T+ N + + + + +I + ++++ Sbjct: 403 LFIAFGGHKQAAGMTLSLENVEAVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLST 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 I L P+G NP P F ++K+ R + HL++ + ++ + + A+ F+ Sbjct: 463 ITNLAKLAPFGMDNPKPRFLIEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L Q++ + L N W G+ QL + DA Sbjct: 522 EELEFEQAQTK-----LVATLSSNSWNGNTSLQLMIEDA 555 >gi|16800628|ref|NP_470896.1| hypothetical protein lin1560 [Listeria innocua Clip11262] gi|16414047|emb|CAC96791.1| lin1560 [Listeria innocua Clip11262] Length = 783 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 178/593 (30%), Positives = 292/593 (49%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W + +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNI--EEASDEKASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L + D A RI QAI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLLAEMDLAVARIKQAIDLNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPDAI 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRENANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + + A A + + ++I Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQVVVDVTKLAMAAIEAK---ESLGNII 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS+E F + + Sbjct: 347 VVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDPVTGVAKGSGRSVEAFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L + Q+ A + P KI+ +N + +++ Sbjct: 405 RSLMTAFGGHPMAAGLTLPAENLAELDNKLQEEAS-HLSDEDFRPALKIEEKINLADISV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 + I LE P+G NP P+F L+ + + HL+ ++DS+ TL AI F Sbjct: 464 SFIAQLEKLAPFGMDNPKPIFLLEEMNLKGTKRIGADKTHLKTMLANEDSDVTLDAIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPHAAVDVVGELSINEWNNIKKPQLRMMDIHIPHWQLFDVR 572 >gi|306831091|ref|ZP_07464252.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426657|gb|EFM29768.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 735 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 177/593 (29%), Positives = 288/593 (48%), Gaps = 34/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S + W ++ + N +T+K + ++ +++L +R V + FL+ + L DP Sbjct: 4 SKYNWKNIEKEPD-NGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S ++M L A +Y+P+R Sbjct: 62 YLLHDMDKAVERIRQAIENYEQILVYGDYDADGMTSASIMKEALEILGAEAQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A+ YA +QG+DVIV DHH + +E A Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQSQGVDVIVTDHHGLPAELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + +L GV F V + + +LDLVA+ T+ Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL L++ ++ + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A ++ N+ R+ + + E+A + V + V Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQKIFEEAMSMVDLE------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGLAKGSARSIEAINI--FHALDEH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+ GGHA AAG+T+ N +L + L ID VL S +++ Sbjct: 402 RGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE P+G NP PVF + ++ R + HL++ +Q + + +AF Sbjct: 462 DTVHSLEKLAPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 + + + + L +N W G QL + DA VEG + Sbjct: 521 GHL----AQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568 >gi|332705338|ref|ZP_08425416.1| exonuclease RecJ [Lyngbya majuscula 3L] gi|332355698|gb|EGJ35160.1| exonuclease RecJ [Lyngbya majuscula 3L] Length = 687 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 170/584 (29%), Positives = 291/584 (49%), Gaps = 21/584 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW + +A + Q I ++A++L+NR + + + A+ FLNP + +MP Sbjct: 30 LPNQRWEIAPLK--TEQADQLAQARGISPLIAQLLINRGIETSEQAEVFLNP-LSQVMPA 86 Query: 72 P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P D + + +AI N EKI I GDYD DG S AL++R L + + IP R Sbjct: 87 PIDEFPDLAISVGMLTEAIANQEKIAICGDYDADGMTSTALLLRALRWLGADVDYAIPSR 146 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N ++E+F EG +I+TVD G +++ + A GI VIV DHH + E Sbjct: 147 MTEGYGINTRIVEEFAEEGVGVILTVDNGIAAHEPIARAVELGITVIVTDHHDLPPELPD 206 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP +L + S L G+ +++ + + + L Q + LL+L L T+ Sbjct: 207 ADAILNPKQLPEESPYRSLAGVGIAYILAICLAQELGQLKGLTQ-----QLLELFTLGTI 261 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---ITAENLGYMIGPSINA 307 D+ PL G+NR ++ +GL + + G++ALIE + + E++G+ +GP INA Sbjct: 262 ADLAPLTGINRRWLKRGLGLLPQSQLAGVQALIEITGVKDDQKSLKPEDIGFRLGPRINA 321 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ + + LL + + AM+ + +NQ R+ + + + + A A + D QQ Sbjct: 322 IGRLSDPQIVIELLTTTAPEVARERAMQCEQVNQRRQQLCADIEQDAIAFIEDTGLDWQQ 381 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+V+ WH G++G++A+RL E++G P F ++E++ + G + + + Sbjct: 382 KRVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYEDNDQQHIRGSARGITEFNIFEAL 441 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +L K GGH A G ++ N FAH + P+ ID L S Sbjct: 442 EFCKDLLGKYGGHKAAGGFSLPAENLSAFEQSLSGFAHQSLKPEHLKPLVSIDASLEFSQ 501 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAF 546 + L L+ P G GN +PVF N ++ RVV H+++T + T+QAIA+ Sbjct: 502 ITSNLYQQLDLLHPCGIGNRDPVFWSANVQILEQRVVGKGHIKLTLNQDNQPVTIQAIAW 561 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R GE+ +R+ + L ++W G+ +L ++ Sbjct: 562 R-----WGEYF--PLPRRVDIAYKLREHHWEGNTTIELELVGVR 598 >gi|168208767|ref|ZP_02634392.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens B str. ATCC 3626] gi|170713021|gb|EDT25203.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens B str. ATCC 3626] Length = 592 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 176/603 (29%), Positives = 301/603 (49%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L DP ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G+DVI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I + Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +S E ++ K GGH MAAGL+VE N L + + P +ID L Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRSMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGSKVEEFKEDFANKYGEEELLRVLDGGNCSFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|304436592|ref|ZP_07396561.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370288|gb|EFM23944.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 671 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 172/597 (28%), Positives = 292/597 (48%), Gaps = 34/597 (5%) Query: 17 RWVSLLGQEGINRA--------LAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRL 67 RW A+ + + I+ ++L R + + + A+ FL+P+ Sbjct: 2 RWEEEEKNVLKEWIVAQHTDEGDALAAEIGVTSIIGQLLWQRGIRTAEEARAFLHPA-DT 60 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 DP ++ D ++ A R++ A+ E I+I+GDYDVDG + AL+MR + N + YI Sbjct: 61 PFHDPFLMADMERGAERVLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLGGNVSYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG N +++ EG +L++TVDCG S D + A G+D+++ DHH Sbjct: 121 PNRFTEGYGLNADALQQIAGEGCRLLVTVDCGIASVDTVAEAAG-GMDIVITDHHLPGQM 179 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 PAYA++NP+R D + +L GV F ++ ++++ R+++ LD+ AL Sbjct: 180 LPPAYAVMNPHRADCAYPEKNLAGVGVAFKLVQALWQMERKESF-------AEYLDIAAL 232 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306 TV D+VPL+G NR V GL G++ALIE I +G+ + P +N Sbjct: 233 GTVADLVPLVGENRKIVQMGLRQMAEHPCVGIRALIEVAGLADKSINTGQVGFQLAPRLN 292 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + G+ LL+++D+ +A +L+ LN RR +E +L +AE ++ D+ Sbjct: 293 AAGRLETARHGAELLLTEDTACASRMAGELNALNTERRDLEQDILAEAERQLADFTPDV- 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 IVV G+ W+ G++G++A+RL EK+ RPS ++ +D GS RSI G + + +S Sbjct: 352 --PAIVVAGEEWNAGVIGIVASRLVEKYYRPSIVLTRLDD-VYKGSCRSIAGLHLYESLS 408 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 L++ GGHAMAAGLT+ F + + A P + + + Sbjct: 409 AC--RDTLIQFGGHAMAAGLTLSCERLSDFRRAFSEVVRTRLTAQDFIPKVAVSALAAPA 466 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI 544 + ++ L PYG GNP P+F N + Q + HL+M +++ + A+ Sbjct: 467 DWTVETVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDIGTREHH-ITAL 525 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH-HFAKK 600 + L L + + +N W+G + Q V +P F ++ Sbjct: 526 YWNAGD--LATVLTEEDS---DLAYTPGINEWQGERSVQCMVDTVTPAAHERIFPER 577 >gi|315612726|ref|ZP_07887637.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis ATCC 49296] gi|315314836|gb|EFU62877.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis ATCC 49296] Length = 757 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 282/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 25 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 82 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 83 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 142 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 143 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 202 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 203 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 252 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 311 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKM------VQV 365 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 366 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADASGKNKLNLDEELDLETLSLET 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + ++S R + AHL++ S+ + + +AF Sbjct: 483 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 541 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 542 W----ATEFSQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 587 >gi|253574928|ref|ZP_04852268.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. oral taxon 786 str. D14] gi|251845974|gb|EES73982.1| single-stranded-DNA-specific exonuclease RecJ [Paenibacillus sp. oral taxon 786 str. D14] Length = 801 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 179/590 (30%), Positives = 294/590 (49%), Gaps = 25/590 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +RW L E A + + I ++A +LV R + S + A+ FL S+ DP++ Sbjct: 6 YRWTQLPYDE--EAARRLAGQLNISPLLASLLVTREMESPEKAELFLRGSLAD-QHDPML 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L+ +A RI +A+ N E+I+I+GDYD DG +S LM+ + H + YIP R +G Sbjct: 63 LSGMKEAVPRIRRAVENGERILIYGDYDADGVSSTTLMIYLMRHLGATYDYYIPHRTKEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++E + +G LI+TVD G ++ + + YA G+DVIV DHH+ + AYAL Sbjct: 123 YGLHIPVLEHYHKKGFTLIVTVDTGISAVEQVAYANAVGMDVIVTDHHEPPAVLPEAYAL 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP L GV + + + L +D + +L AL T+ D++ Sbjct: 183 INPKLPYCTYPFKGLAGVGVAYKLAQAL---LGEDTPIAWT-------ELAALGTIADLM 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL G NR V GL R PG+ AL+ SS +T+ + + + P INA GR+ Sbjct: 233 PLTGENRMIVKSGLASMERSAFPGMTALLGTSGWSSGEVTSTAVAFGLAPRINASGRMSH 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N LL +++ +E E +A +LDVLN+ R+++ M+++A ++ +Q VIVV Sbjct: 293 ANRAVALLTAENMEEAEAIAEELDVLNKERQIIVEDMVQEALQQLESQEQSEGLPDVIVV 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 G+ W+ G+VG++A++L E++ RP+ + E G+ GS RSI GFDI + ++ Sbjct: 353 AGEGWNAGVVGIVASKLLERYYRPTIVLGIHPETGECKGSARSIPGFDIYEALTDC--AD 410 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGH AAG+++ R FA + PV + D + + + Sbjct: 411 LLDHFGGHPSAAGMSLSRERLEEFGRRLNAFAAGRLTPEHFVPVLETDLTCSLKDITLQA 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 I+ L+ P+G N P KL R + HL++ Q+ +T++A+AF Sbjct: 471 IEQLQQLAPFGMANTCPRLLLRGLKLLECRQMGKDGKHLKLIL-GQNGKTVEAVAFGKGE 529 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + S R+ + VN W GS++ QL + D + F + Sbjct: 530 L----APLLSEEARIDIVAEASVNEWNGSRKPQLMIQDLAVSHLQVFDYR 575 >gi|320546499|ref|ZP_08040814.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus equinus ATCC 9812] gi|320448884|gb|EFW89612.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus equinus ATCC 9812] Length = 732 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 285/592 (48%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72 S + W ++ +T+K I + ++++ +R + + FL+ + L DP Sbjct: 4 SKYHWKNIEKAPDDG-FFDLTKKEKITALASKIIYSRGIDTEEKITQFLSNDLSKLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S ++M L A +Y+P+R V Sbjct: 62 YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFV 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A+ YA +QG+DVIV DHH + +E A Sbjct: 122 DGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQSQGVDVIVTDHHGLPAELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + +L GV F V + + +LDLVA+ T+ Sbjct: 182 FAIVHPEHPEGNYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL L++ +I + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEMLKQTERIGLMELMKVSDIDMLDVNEETVGFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A ++ N+ R+ + + ++A V V Sbjct: 291 LDDPNPAVELLTGFDDEEALSIAQMINAKNEERKEIVQKIYDEAMNMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEHIAQPVIVLN-IEDGMAKGSARSIEAINI--FQALDDH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N +L + + L ID VL + +++ Sbjct: 402 RDLFEAFGGHAGAAGMTLPVENLEQLSQVLCDYIADNGIDLSQKKTLTIDEVLPLAEIDL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE P+G NP PVF + +++ R + HL++ +Q S + +AF Sbjct: 462 DTVKSLEKIAPFGMDNPKPVFEIKDFEVKQARTMGQNGAHLKLKI-TQGSTAVDLVAFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G + EF + + + + L +N W G QL + DA + Sbjct: 521 -GHLVQEF---QQAQNLCLAVTLSINKWNGQTTVQLMLEDARVDGVQLIDIR 568 >gi|307610164|emb|CBW99712.1| single-stranded-DNA-specific exonuclease RecJ [Legionella pneumophila 130b] Length = 579 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 179/570 (31%), Positives = 278/570 (48%), Gaps = 23/570 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ + R +S + L+ ++ L+P L ++A R+ A+ + ++I+I Sbjct: 17 NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R GYG P+++E LIITV Sbjct: 73 IGDFDADGATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S++ + A GIDV++ DHH A A+VNPN+ L + GV+F Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + R L N ++ S LDLVAL TV DVV L NR V +G+M R Sbjct: 193 YVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + Q G+KALIE + +LG+ I P +NA GR+ + +LG LI+ D + Sbjct: 253 QGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386 +LD LN RR +ES M EQA + + ++ + + WH G++G+L Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGIL 372 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A R+KEK+ RP A + D + GS RS+ +I +++ G+++K GGHAMAA Sbjct: 373 AGRMKEKYHRPVIAFASVSDHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GL++ F + DG L + +++ +++ AGP+G Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 PVF ++ R+V HL+MT SQ E L AIAF V R K Sbjct: 493 AFAEPVFD-NIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWP----NHRIK 547 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +H L +N+++G R QL + +PV+ Sbjct: 548 YIHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577 >gi|54294498|ref|YP_126913.1| single-stranded-DNA-specific exonuclease RecJ [Legionella pneumophila str. Lens] gi|53754330|emb|CAH15807.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella pneumophila str. Lens] Length = 579 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 178/570 (31%), Positives = 277/570 (48%), Gaps = 23/570 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ + R +S + L+ ++ L+P L ++A R+ A+ + ++I+I Sbjct: 17 NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R GYG P+++E LIITV Sbjct: 73 IGDFDADGATSTALAITALRAMGAKFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S++ + A GIDV++ DHH A A+VNPN+ L + GV+F Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + R L N ++ S LDLVAL TV DVV L NR V +G+M R Sbjct: 193 YVMLALRRHLSNCNWFNEINIPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + Q G+ ALIE + +LG+ I P +NA GR+ + +LG LI+ D + Sbjct: 253 QGQCREGINALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS----VIVVEGDRWHPGIVGLL 386 +LD LN RR +ES M EQA + + ++ + + WH G++G+L Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKQLPVALCLHDKTWHQGVIGIL 372 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A R+KEK+ RP A + D + GS RS+ +I +++ G+++K GGHAMAA Sbjct: 373 AGRMKEKYHRPVIAFASVSDHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GL++ F + DG L + +++ +++ AGP+G Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 PVF ++ R+V HL+MT SQ E L AIAF V R K Sbjct: 493 AFAEPVFD-NIFEILDQRIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWP----NHRIK 547 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +H L +N+++G R QL + +PV+ Sbjct: 548 YIHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577 >gi|52841691|ref|YP_095490.1| single stranded DNA specific exonuclease RecJ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628802|gb|AAU27543.1| single stranded DNA specific exonuclease RecJ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 579 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 178/570 (31%), Positives = 278/570 (48%), Gaps = 23/570 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +PD++ R+ + R +S + L+ ++ L+P L ++A R+ A+ + ++I+I Sbjct: 17 NVPDVLKRIYITRGISDE---SQLDKQLQTLLP-FHTLKGINEACLRLENALRSEQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L +P+R GYG P+++E LIITV Sbjct: 73 IGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPDLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S++ + A GIDV++ DHH A A+VNPN+ L + GV+F Sbjct: 133 DNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + R L N ++ S LDLVAL TV DVV L NR V +G+M R Sbjct: 193 YVMLALRRHLSNCNWFNEINMAEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIR 252 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + Q G+KALIE + +LG+ I P +NA GR+ + +LG LI+ D + Sbjct: 253 QGQCREGIKALIEIAGRDYSRLRESDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDRWHPGIVGLL 386 +LD LN RR +ES M EQA + + ++ + + WH G++G+L Sbjct: 313 NFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGIL 372 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A R+KEK+ RP A + + + GS RS+ +I +++ G+++K GGHAMAA Sbjct: 373 AGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAA 432 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GL++ F + DG L + +++ +++ AGP+G Sbjct: 433 GLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQ 492 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 PVF ++ R+V HL+MT SQ E L AIAF V R K Sbjct: 493 AFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGELLDAIAFNVDLKSWP----NHRIK 547 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +H L +N+++G R QL + +PV+ Sbjct: 548 YIHAAYKLDINFYQGRTRLQLLIQAMNPVQ 577 >gi|152979176|ref|YP_001344805.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus succinogenes 130Z] gi|150840899|gb|ABR74870.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus succinogenes 130Z] Length = 558 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 168/561 (29%), Positives = 278/561 (49%), Gaps = 20/561 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ ++ ++ +P +L+ + A + + + KI+I G Sbjct: 6 DPLLDRLYRARHIQNAQE---LDRTLASML-NPNLLSGMESAVNLLTE--FQHRKIVIVG 59 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + N IP+R GYG + ++ E + +G +L+ITVD Sbjct: 60 DFDADGATSTALTVLALRRLGFTDVNFLIPNRFEQGYGLSVAVAEMALQQGVELLITVDN 119 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + Y G+ V++ DHH A A+VNPN L GV F V Sbjct: 120 GVSSHEGVAYLKRHGVKVLITDHHLPPETLPVADAIVNPNLDGCTFPSKSLAGVGVAFYV 179 Query: 219 LVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQG 275 ++ + LR+ + + LLD+VAL T+ DVVPL NR +GL + ++ Sbjct: 180 MLALRSKLREMGRFDNKTQPNFTELLDIVALGTIADVVPLDQNNRILAYQGLARIRAKRC 239 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 + G++AL E N + +TA +LGY I P +NA GR+ ++G LL++D + LA+ Sbjct: 240 HYGIRALAEVANKDITQLTAGDLGYSIAPRLNAAGRLDNMSVGVELLLADSMERARALAL 299 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD LNQ R+ +E M ++A + +V+ WH G++G+LA+R+K++ Sbjct: 300 ELDDLNQTRKEIEQGMKQEALDICRNLTALRRELPLGMVLYQADWHQGVLGILASRIKDQ 359 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 F RP A + + +G GS RS+EG + ++ +++K GGHAMAAGL++ Sbjct: 360 FHRPVVAFAQDGNGVLKGSARSVEGVHMRDLLERVHSRYPDMILKFGGHAMAAGLSIHEA 419 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F R F + + DG L +NI + L + GP+G P PVF Sbjct: 420 LFERFRQVFDEVVTEWIGKDELKGTLWTDGELTPPQLNIQTAETLRAGGPWGQSFPEPVF 479 Query: 512 AFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R+V HL+M E Q + L AIAF + + +++ + Sbjct: 480 DGE-FKILQQRLVGERHLKMLVEPKQGGQLLDAIAFNIDTRYYPDLSVRAA----KLVYK 534 Query: 571 LCVNYWRGSKRCQLRVLDASP 591 L +N +RG++ QL V P Sbjct: 535 LDINEFRGNRDVQLLVDYIEP 555 >gi|307706138|ref|ZP_07642957.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis SK321] gi|307618538|gb|EFN97686.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis SK321] Length = 740 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 176/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 6 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVGRIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + G++ +++ I ++ +T E +G+ + P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGIQEMLDMAGIAANEVTEETVGFQLAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------APEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ + EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVFN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPVFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|304385115|ref|ZP_07367461.1| single-stranded-DNA-specific exonuclease RecJ [Pediococcus acidilactici DSM 20284] gi|304329309|gb|EFL96529.1| single-stranded-DNA-specific exonuclease RecJ [Pediococcus acidilactici DSM 20284] Length = 773 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 278/583 (47%), Gaps = 28/583 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S F W + + + + I+ R+LV R + D +FL + ++ DP Sbjct: 4 SRFNWQVPSLPD--VDIAELAKATQLDPIIVRILVARGFRTADEMTNFLAMD-QSVVHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI+ AI +EKI+++GDYD DG S +M L+ + N ++P+R Sbjct: 61 FLLHDMQKAVERIMSAIEANEKILVYGDYDADGVTSTTIMYETLAQLGADVNYFVPNRFK 120 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN + + FIN QLI+TVD G +A+ YA G+DV+V DHH++ + A Sbjct: 121 DGYGPNLAEYQHFINNEQVQLIVTVDNGVAGNEAINYAQEHGVDVVVTDHHEMPDQLPNA 180 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P + G L GV F V + + + LDL A+ T+ Sbjct: 181 YAIVHPRHPEGEYPFGDLSGVGVAFKVACALLEEVPE-----------EFLDLYAIGTIA 229 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V + NR V GL + GL+ LI + + I E +G+ + P INA GR Sbjct: 230 DLVSMTDENRLLVKLGLQLIPETSRIGLQKLIAVAGVETSQIDEETIGFTVAPRINAVGR 289 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G+++ +LL + D ++ +A ++ N R+ + + + E A + Q V Sbjct: 290 LGDASQAVKLLTTFDEEQATAIAKDINATNTKRQGLVNEIYEMAAEIAKDEGHRDLQTLV 349 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 + G WH G++G++A+RL E +P+ +S + G GSGRS+ ++ + ++ A Sbjct: 350 --ISGHDWHQGVLGIVASRLVELTNKPTIVLSDQNQDGVYKGSGRSVANLNLFEALNPAR 407 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E GGH MA G+TV+ N L D +K A P +D + S ++ Sbjct: 408 EH--FEGFGGHHMAIGITVKEANLPVLADQLEKAAEQAQLDFRQRPQLNLDATVAISELS 465 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547 L+ ++ GP+G NP P A N ++ ++ + HL+ T +Q + L AIAF+ Sbjct: 466 TDLVTKIKQLGPFGMDNPVPKLAITNVRVTDVKAIGQNQAHLKFT-ANQAGQQLAAIAFQ 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + G L +N WRG+ QL D Sbjct: 525 RGEIA---DKLSHLSNTIDLAGTLGINEWRGNVTLQLMTEDLK 564 >gi|317049378|ref|YP_004117026.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. At-9b] gi|316950995|gb|ADU70470.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea sp. At-9b] Length = 576 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 183/553 (33%), Positives = 268/553 (48%), Gaps = 18/553 (3%) Query: 49 NRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108 R V L + L+P L D A + Q + + +I++ GD+D DGA S Sbjct: 32 QRGVRDA---AELERGAKHLLP-WQTLGGIDAAVTLLHQMLRDGRRIVVVGDFDADGATS 87 Query: 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168 AL + L N + +P+R DGYG +P ++E+ GA++I+TVD G +S+ + Sbjct: 88 TALTVLALRSLGGNIDYLVPNRFEDGYGLSPEVVEQARARGAEMILTVDNGISSHAGVDT 147 Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228 A GI V+V DHH A A+VNPN D L GV F +++ + LR Sbjct: 148 AHQYGIPVLVTDHHLPGDTLPAAEAIVNPNLNDSDFPSRALAGVGVAFYLMLALRAYLRS 207 Query: 229 DNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIE 284 N +L LDLVAL TV DVVPL NR V +GL R + G++AL+E Sbjct: 208 QNWFSDGRTEPNLAEWLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRAGIRALLE 267 Query: 285 RVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 N + A +LG+ IGP +NA GR+ + ++G LL+++D E MLA +LD LNQ R Sbjct: 268 IANRDARQLVASDLGFAIGPRLNAAGRLDDMSVGVALLLTEDITEARMLANELDALNQTR 327 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 + +E M +A A + WH G+VG+LA+RLKE+F RP A + Sbjct: 328 KEIEQGMKSEALALCDALERQHTDLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAFA 387 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460 DG GSGRSI G + + G+++K GGHAMAAGL+++ + F Sbjct: 388 PAGDGTLKGSGRSIAGLHLRDALERLDTLFPGLMIKFGGHAMAAGLSLQEARYEEFRQRF 447 Query: 461 QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS 520 + V DG L A ++ ++L AGP+G P PVF KL Sbjct: 448 AALIDEWLDGEALQGVIWSDGELRAQEFSLQTAELLREAGPWGQAFPEPVFDGR-FKLLQ 506 Query: 521 IRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 R+V HL++ E L IAF V T + S +++ + L +N +RG+ Sbjct: 507 QRLVGERHLKVMVEPIGGGPLLDGIAFNVDTTLWPD----SSVRQVELAYKLDINEYRGN 562 Query: 580 KRCQLRVLDASPV 592 + QL + P+ Sbjct: 563 RSVQLIIDHLWPL 575 >gi|182624017|ref|ZP_02951805.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens D str. JGS1721] gi|177910910|gb|EDT73264.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens D str. JGS1721] Length = 592 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 173/603 (28%), Positives = 300/603 (49%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L +P ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGRIENL-NNPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI N KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIENGNKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N + ++ EG ++I+T D G +++ + A G+DVI+ DHH + Sbjct: 121 GMNSNRVKILKEEGTEIILTCDNGIAAFEEIDLAQKLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEVPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADTLAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNI--F 410 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 411 EELSKCKELISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|209526934|ref|ZP_03275452.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima CS-328] gi|209492629|gb|EDZ92966.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima CS-328] Length = 686 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 164/612 (26%), Positives = 286/612 (46%), Gaps = 35/612 (5%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKD 59 M D+ + E + RW E A ++++ + I+A++L+NR + + + A+ Sbjct: 1 MEDKPPITTEPLLPKQRWYIFP--ERPEIAQSLSETTGVHPIIAQILINRGIETKEQAEA 58 Query: 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC 119 FLNP + L D K + + AI N +KI I GDYD DG S AL++R +S Sbjct: 59 FLNPQSQTLPEPMEEFPDLPKTVQLLQNAIDNQQKIAICGDYDADGMTSTALLIRAISQL 118 Query: 120 SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 + IP R+ +GYG N ++E+F ++G +IITVD G ++ + A G+ VI+ Sbjct: 119 GADITSAIPSRMQEGYGINNRIVEEFHDQGISIIITVDNGISAIAPVARAKELGLTVIIT 178 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 DHH + + A A++NP L S L GV +++ + + ++ + + Sbjct: 179 DHHDLPPQLPNADAILNPKLLPKTSPYYGLAGVGVAYILALSLAKLRGEWESLRW----- 233 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL----------IERVNIS 289 LL+L L T+ D+ PL G+NR +V +GL + G++AL N + Sbjct: 234 QLLELFTLGTIADMAPLNGVNRRWVKRGLKILPESKIAGVQALIQIAGLANQQPNLTNST 293 Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 + + E++G+ +GP INA GRIG + LL +D A + + N R+ + + Sbjct: 294 TSMKPEDIGFRLGPRINAIGRIGHPQVVIELLTTDHMGTALEQAKECEETNLLRKQLCAD 353 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + ++A A +++Q V+V +WH G++G++A+RL E++G P F ++E++ Sbjct: 354 IEQEAIAWYENSNINLEQERVLVPCQKKWHHGVIGIVASRLVERYGVPVFICTYEDEENL 413 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GS R I F + + + F + +L K GGH A G ++ N + +FAH + Sbjct: 414 RGSARGIPEFHVFEALQFC--QDLLGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQ 471 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529 P+ +D +N +N L D ++ P G N PVF P ++ ++V +H+ Sbjct: 472 VEHLRPLINVDVSINLRDINYKLYDQIDKIQPCGIANSEPVFWTPKLRIVHQKIVGKSHI 531 Query: 530 QMTFESQD--------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 ++T T+ AIA+R + L N W Sbjct: 532 KLTLSQDLPPEITMAVLPTISAIAWRWADYF-------PLPSPLDFAYKLRKNTWNNQTA 584 Query: 582 CQLRVLDASPVE 593 +L ++ E Sbjct: 585 IELEIVGVRLPE 596 >gi|322387143|ref|ZP_08060753.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus infantis ATCC 700779] gi|321141672|gb|EFX37167.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus infantis ATCC 700779] Length = 739 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 174/590 (29%), Positives = 287/590 (48%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + AR+L +R + + FL PS+ L DP + Sbjct: 6 YNWQFAPQVED-ADFTKIAKKAGLGPEAARLLFSRGIKDEDSLSRFLAPSLDDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVNRIRRAIEQGEFILVYGDYDADGMTSASIIKETLEQLGAECLVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + A+A Sbjct: 124 YGPNASVYKYFIEQQGISLIVTVDNGVAGHEAIDLAQSMGVDVIVTDHHSLPEVLPDAHA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + HL GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPESDYPFKHLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V R GL+ L E I SS +T E +G+ + P +NA GR+ Sbjct: 233 VSLTDENRIMVQYGLEVLRNTQRLGLQELFEIAGISSSDLTEETVGFQLAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E+ +A+ + N+ R+ + A+ E+A++ V SV V Sbjct: 293 DPNPAIELLTGFDDEEVREIALMIQDKNEERKEIVQAIYEEAKSLV------DPNKSVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RSIE DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSIEAVDI--FEALNPHRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + + + +D L+ ++++ Sbjct: 404 LFIAFGGHAGAAGMTLEAEQLDALSEILETYVKDKGIDAKGKNTLYLDEELDLESLSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F + ++++ R + +HL++ S+ + + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIRDFQVENARSMGAGDSHLKLKI-SKGTASFEVVAFGQG- 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + S+ K++ + L VN W G QL ++DA F + Sbjct: 522 ---SKATEFSQVKQLELAVTLSVNQWNGQTTLQLMMVDARVDSVQLFNIR 568 >gi|146312950|ref|YP_001178024.1| ssDNA exonuclease RecJ [Enterobacter sp. 638] gi|145319826|gb|ABP61973.1| exonuclease RecJ [Enterobacter sp. 638] Length = 577 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 171/565 (30%), Positives = 274/565 (48%), Gaps = 20/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ R V + L S++ ++P L+ + A + A+ +I++ Sbjct: 21 DLSPLLRRLYAGRGVRNA---NELERSVKGMLP-WQQLSGVETATELLYNALREGTRIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + +P+R DGYG +P ++++ GAQ+I+TV Sbjct: 77 VGDFDADGATSTALTVLSLRALGCDNVTYLVPNRFEDGYGLSPEVVDQAKARGAQMILTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A GI VIV DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVDRAHQLGIPVIVTDHHLPGDTLPAADAIINPNLRDCDFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + +LR +L LDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRALLRDKGWFEARGIAVPNLAEYLDLVALGTVADVVPLDTNNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 +LA +LD LN+ R+ +E M +A + + WH G+VG+LA+R Sbjct: 317 VLANELDALNETRKEIEQGMQAEALTLCEKLERSSETLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHPGLMIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F F + + + DG L + + + + +L +GP+G P Sbjct: 437 LEEKKFDEFQRLFSALVTDWLDPALLQGEVVSDGALTPAEMTMEIAQLLRESGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F +L R+V HL++ E L IAF V + + + + + Sbjct: 497 EPLFDGR-FRLLQQRLVGERHLKVMVEPIGGGPLLDGIAFNVDTSVWPD----NGVREVE 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ Q+ + P Sbjct: 552 LAYKLDINEFRGNRSLQIIIDHIWP 576 >gi|295697199|ref|YP_003590437.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus tusciae DSM 2912] gi|295412801|gb|ADG07293.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus tusciae DSM 2912] Length = 575 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 174/581 (29%), Positives = 289/581 (49%), Gaps = 27/581 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW++ G A+A Q+ +AR+L RN+ + + A FLNP + L DP Sbjct: 2 KRWIAAPADPG---AVATLQREGFSSFMARILAARNIRTGEEAGRFLNPRLEDL-EDPAK 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + A RI +A+ N E I ++GDYD DG + +++ L YIPDR +G Sbjct: 58 MKGMLPALARIREALANRESIAVYGDYDCDGVCATSILYLALRELGARVQAYIPDRFQEG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + + G +LIITVD G T+ + A + G+D+I+ DHHQ +E A A+ Sbjct: 118 YGLHEEAIRELYARGVRLIITVDTGITALRQAETARSLGVDLIITDHHQPPAELPRALAV 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + +LC AG+ F ++ + + + LDLVA+ATV D+V Sbjct: 178 VNPKQPGCPYSDTNLCGAGIAFKMVQGLLGRVPE-----------EFLDLVAIATVADLV 226 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL+G NR V GL + PGL ALI+ + P+T+ +LG+ +GP +NA GR+ Sbjct: 227 PLLGENRILVHFGLKQLQNPQRPGLAALIKSAGLDGRPLTSGHLGFQLGPRLNAAGRMET 286 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N RLL + D +E + +L+ LN+ R+ + + A ++ + + +V+ Sbjct: 287 ANAAFRLLTTADPEEAQKWTEQLETLNRERQRLCDEIAAVASEEIDRH-PEWRAQPSLVL 345 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+PG++G++A+R+ E++ RP+ I+ + GS RSI GFD+ + Sbjct: 346 AGEGWNPGVIGIVASRMVEQYYRPTLVIA-LDGDTAKGSARSIPGFDLY--SGLKEIADL 402 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH MAAG ++ L F + A + + A P D +N +++ L Sbjct: 403 FDRFGGHTMAAGFSLPAKRVEDLRRRFAEVAASRLTAEDLRPRILCDAEINLEKIDLPLA 462 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 + L + P+G GNP P + L R V + HL++ + + + A+A+R Sbjct: 463 ESLATLEPHGLGNPAPKLFVRSAPLLESRTVGASAAHLRLRIGNPEH-PVTALAWRRGDD 521 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + +H+ G + +N W G+K+ QL + D P Sbjct: 522 I---RFLAQGVRAVHLVGRVQINEWNGTKKVQLELDDWRPA 559 >gi|291613972|ref|YP_003524129.1| single-stranded-DNA-specific exonuclease RecJ [Sideroxydans lithotrophicus ES-1] gi|291584084|gb|ADE11742.1| single-stranded-DNA-specific exonuclease RecJ [Sideroxydans lithotrophicus ES-1] Length = 563 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 168/561 (29%), Positives = 273/561 (48%), Gaps = 24/561 (4%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + I ++AR+ R + +D A+ L+ ++ L+P +L + ++ A + AI + ++I Sbjct: 19 ESGIAPLLARIYAARGI-VDTAQ--LDTDLKQLLP-FSLLKNAERMASILADAIADHKRI 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 +I DYD DGA + + MR L+ +P+R GYG P ++ +++T Sbjct: 75 LIVADYDADGATACTVAMRGLAALGAKVEFIVPNRFEYGYGLTPEIVRLAAESKPDILLT 134 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G S + + A GI V+V DHH A +VNPN+ HL GV+ Sbjct: 135 VDNGIASVEGVAEANRLGIQVLVTDHHLPGDTLPDALCIVNPNQPGCTFPSKHLAGVGVM 194 Query: 216 FLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 F VL+ + +R+ +L +LLDLVAL TV DVV L NR V +GL R Sbjct: 195 FYVLMALRAEMRERGVFAGKTEPNLGNLLDLVALGTVADVVKLDDNNRILVQQGLQRIRA 254 Query: 274 QGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + L + ++ LG+++GP +NA GR+ + +LG R L++DD+ E Sbjct: 255 GRSCAGIQALLRIARRPAIQSSSYELGFIVGPRLNAAGRLDDMSLGIRCLLTDDTAEAGE 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LN RR +E+ M + A + D + + + WH G++G+LA+RLK Sbjct: 315 IATRLDALNHERRSIEADMQDSAL--AVLDNFDPADGYSLTLFNEDWHQGVIGILASRLK 372 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 +KF RP A + + G+ GSGRSI G + + + ++ K GGHAMAAGL++ Sbjct: 373 DKFHRPVIAFARAQTGELKGSGRSIAGLHLRDALDLISKRQPHLIQKFGGHAMAAGLSIH 432 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F+ A ++ A V DG L+ ++ + L+ +G G P P Sbjct: 433 EEHLNDFRQAFETVAQELLDADALVKVISTDGSLDTHEFSMDIARDLQR-QVWGQGFPEP 491 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 +F + ++Q+ RVV HL++ S + AI F F + + +H Sbjct: 492 LFEG-DFRVQTQRVVGEKHLKLKLSSPAG-SFDAIRF---------FSAEPAPEHIHAVY 540 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L VN + GS+ QL V + Sbjct: 541 SLSVNEYNGSESLQLIVRHWA 561 >gi|191638544|ref|YP_001987710.1| Single-strand DNA-specific exonuclease RecJ [Lactobacillus casei BL23] gi|190712846|emb|CAQ66852.1| Single-strand DNA-specific exonuclease RecJ [Lactobacillus casei BL23] gi|327382581|gb|AEA54057.1| Single-stranded DNA-specific exonuclease [Lactobacillus casei LC2W] gi|327385779|gb|AEA57253.1| Single-stranded DNA-specific exonuclease [Lactobacillus casei BD-II] Length = 764 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 282/592 (47%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 + ++W Q A A+++ +P +A +L+ R ++ F++P L DP Sbjct: 2 TQYQWQLAP-QPAAADAHALSETLGVPPFLATLLLQRGINDQADYDAFVHPDTSRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI +EKI I+GDYDVDG S A+M+ L + +++IPDR Sbjct: 60 FALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G + A G+DV+V DHH++ ++ A Sbjct: 120 DGYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPDGDYPFGDLSGAGVAFKVATAL-----------LGEPPLESVDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRVIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + + + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMA--QAPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E G+P+ ++ +DG+ GSGRSIE + + K + A E Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +V GGH MA GLT + + + + A ++ + P I L + + + Sbjct: 407 H--MVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATMLK-TVPKPTLPISTRLEDADLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 ++ P+G GNP PVF+ +Q+++ + HL+ + + I F Sbjct: 464 DHYQLIRQLAPFGQGNPEPVFSVRPQAIQNVKQIGKENNHLRFQIDQG----INVIGFGY 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + L N W+G QL + D + + Sbjct: 520 GDA----AETLATAQAAKLAVQLDQNTWQGHTSLQLMLKDYEVKQPQVIDWR 567 >gi|303250251|ref|ZP_07336451.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252016|ref|ZP_07533916.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650867|gb|EFL81023.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860485|gb|EFM92498.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 571 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 177/559 (31%), Positives = 276/559 (49%), Gaps = 19/559 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 20 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN +D L GV F V+ Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLVDCSFPSKSLAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R++ HL++ E AI F + + K + Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L +N ++G+K QLR+ + Sbjct: 551 LDINEFKGNKNLQLRIENI 569 >gi|126207943|ref|YP_001053168.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae L20] gi|126096735|gb|ABN73563.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 585 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 177/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 34 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 89 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 90 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 149 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 150 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 209 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 210 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 269 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 270 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 329 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 330 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 389 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 390 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 449 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 450 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 509 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R++ HL++ E AI F + + K + Sbjct: 510 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 564 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L +N ++G+K QLR+ + Sbjct: 565 LDINEFKGNKNLQLRIENI 583 >gi|53728846|ref|ZP_00134889.2| COG0608: Single-stranded DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303252129|ref|ZP_07338297.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245298|ref|ZP_07527386.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247465|ref|ZP_07529510.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249691|ref|ZP_07531672.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307258709|ref|ZP_07540441.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302648912|gb|EFL79100.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853639|gb|EFM85856.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855968|gb|EFM88126.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858280|gb|EFM90355.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306867060|gb|EFM98916.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 571 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 177/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 20 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R++ HL++ E AI F + + K + Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L +N ++G+K QLR+ + Sbjct: 551 LDINEFKGNKNLQLRIENI 569 >gi|322377822|ref|ZP_08052311.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. M334] gi|321281245|gb|EFX58256.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. M334] Length = 744 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 176/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 10 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVARIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGTDAAGKNKLNLDEELDLETLSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMNNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 527 L----ATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|307256514|ref|ZP_07538295.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864924|gb|EFM96826.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 571 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 177/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 20 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R++ HL++ E AI F + + K + Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L +N ++G+K QLR+ + Sbjct: 551 LDINEFKGNKNLQLRIENI 569 >gi|190149805|ref|YP_001968330.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914936|gb|ACE61188.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 585 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 176/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 34 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 89 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 90 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 149 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 150 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 209 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 210 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 269 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E + + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 270 GIRALAEVSKRELASLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 329 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 330 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 389 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 390 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 449 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 450 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 509 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R++ HL++ E AI F + + K + Sbjct: 510 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 564 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L +N ++G+K QLR+ + Sbjct: 565 LDINEFKGNKNLQLRIENI 583 >gi|307263125|ref|ZP_07544746.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871487|gb|EFN03210.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 571 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 176/559 (31%), Positives = 275/559 (49%), Gaps = 19/559 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 20 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E + + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 256 GIRALAEVSKRELASLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R++ HL++ E AI F + + K + Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYK 550 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L +N ++G+K QLR+ + Sbjct: 551 LDINEFKGNKNLQLRIENI 569 >gi|24379867|ref|NP_721822.1| putative single-strand DNA-specific exonuclease RecJ [Streptococcus mutans UA159] gi|24377841|gb|AAN59128.1|AE014979_4 putative single-strand DNA-specific exonuclease RecJ [Streptococcus mutans UA159] Length = 734 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 275/583 (47%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + + +K + A++L R + + FL P + L DP Sbjct: 4 SKYAWKINEKKPDDG-FFELAKKENLNPTAAQILYERGFKTSKDIEAFLRPDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI +AI +E+I+I+GDYD DG S ++ L Y+P+R Sbjct: 62 FLLNDMDKAVTRIRRAIETNERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G +DA+ YA QG+DVIV DHH + +E A Sbjct: 122 DGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQGQGVDVIVTDHHSMPAELPSA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P D L GV F + + + +LDLVA+ T+ Sbjct: 182 YAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL+ LI + I E +G+ + P +NA GR Sbjct: 231 DMVSLTDENRVMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E + +A ++ N+ R+ + A+ E+A V + SV Sbjct: 291 LDDPNPAVELLTGFDDEEAKTIAAMINEKNEERKTIVQAIFEEAMTLV------DENKSV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WH G++G++A R+ E+ +P ++ E+G GS RS+E +I + Sbjct: 345 QVLAKEGWHAGVLGIVAGRIMEQINQPVIVLN-IENGLAKGSARSLESVNI--FNALDAH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + + GGHA AAG+T+E L + L ID L +++ Sbjct: 402 RDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE+ P+G N P+F + ++ +R + HL++ + +AF Sbjct: 462 DTLKGLETLAPFGMNNKKPIFLLRDFTVKQVRTMGQNGAHLKLKVAQEQ-AVFDLLAFN- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 YG+ + EF + + + + L VN W G+ QL ++DA Sbjct: 520 YGSLVTEF---QQAQHLELAVTLSVNRWNGNTSLQLMLVDARV 559 >gi|331266844|ref|YP_004326474.1| single-stranded DNA-specific exonuclease [Streptococcus oralis Uo5] gi|326683516|emb|CBZ01134.1| single-stranded DNA-specific exonuclease [Streptococcus oralis Uo5] Length = 757 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 174/591 (29%), Positives = 282/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 25 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQNEESLKKFLEPSLEDLH-DPYL 82 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 83 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 142 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + L++TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 143 YGPNASVYKYFIEQEGISLVVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 202 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 203 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ + P +NA GR+ Sbjct: 252 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETIGFQLAPRLNALGRLD 311 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 365 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ E+G+ GS RS+E DI + Sbjct: 366 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEEGRAKGSARSVEAVDI--FEALDPHRD 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLET 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + ++S R + AHL++ S+ + + +AF Sbjct: 483 VKSFERLAPFGMDNQKPVFYIKDFHVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 541 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 542 W----ATEFSQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 587 >gi|270291404|ref|ZP_06197626.1| single-stranded-DNA-specific exonuclease [Pediococcus acidilactici 7_4] gi|270280250|gb|EFA26086.1| single-stranded-DNA-specific exonuclease [Pediococcus acidilactici 7_4] Length = 773 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 278/583 (47%), Gaps = 28/583 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S F W + + + + I+ R+LV R + D +FL + ++ DP Sbjct: 4 SRFNWQVPSLPD--VDIAELAKATQLDPIIVRILVARGFRTADEMTNFLAMD-QSVVHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI+ AI +EKI+++GDYD DG S +M L+ + N ++P+R Sbjct: 61 FLLHDMQKAVERIMSAIEANEKILVYGDYDADGVTSTTIMYETLAQLGADVNYFVPNRFK 120 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN + + FIN QLI+TVD G +A+ YA G+DV+V DHH++ + A Sbjct: 121 DGYGPNLAEYQHFINNEQVQLIVTVDNGVAGNEAINYAQEHGVDVVVTDHHEMPDQLPNA 180 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P + G L GV F V + + + LDL A+ T+ Sbjct: 181 YAIVHPRHPEGEYPFGDLSGVGVAFKVACALLEEVPE-----------EFLDLYAIGTIA 229 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V + NR V GL + GL+ LI + + I E +G+ + P INA GR Sbjct: 230 DLVSMTDENRLLVKLGLQLIPETSRIGLQKLIAVAGVETSQIDEETIGFTVAPRINAVGR 289 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G+++ +LL + D ++ +A ++ N R+ + + + E A + Q V Sbjct: 290 LGDASQAVKLLTTFDEEQATAIAKDINATNTKRQGLVNEIYEVAAEIAKDEGHRDLQTLV 349 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 + G WH G++G++A+RL E +P+ +S + G GSGRS+ ++ + ++ A Sbjct: 350 --ISGHDWHQGVLGIVASRLVELTNKPTIVLSDQNQDGVYKGSGRSVANLNLFEALNPAR 407 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E GGH MA G+TV+ N L D +K A P +D + S ++ Sbjct: 408 EH--FEGFGGHHMAIGITVKEANLPVLADQLEKAAKQAQLDFRQRPQLNLDATVAISELS 465 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547 L+ ++ GP+G NP P A N ++ ++ + HL+ T +Q + L AIAF+ Sbjct: 466 TDLVTKIKQLGPFGMDNPVPKLAITNVRVTDVKAIGQNQAHLKFT-ANQAGQQLAAIAFQ 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + G L +N WRG+ QL D Sbjct: 525 RGEIA---DKLSHLSNTIDLAGTLGINEWRGNVTLQLMTEDLK 564 >gi|307704351|ref|ZP_07641268.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis SK597] gi|307622111|gb|EFO01131.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis SK597] Length = 740 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 175/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + + K FL PS+ L DP + Sbjct: 6 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + +++S R + AHL++ S+ + + +AF Sbjct: 464 VKNFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|225854144|ref|YP_002735656.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae JJA] gi|225723682|gb|ACO19535.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae JJA] Length = 740 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGGASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|295108470|emb|CBL22423.1| exonuclease RecJ [Ruminococcus obeum A2-162] Length = 614 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 170/584 (29%), Positives = 282/584 (48%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLIL 75 +W+ + I +K I ++AR++ NR+V + A + +L+ ++ L P P ++ Sbjct: 47 KWMVYAKKADFQ---EIGRKFGIDPVIARLIRNRDVDGEEAIQSYLHGTLEEL-PSPWLM 102 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + I ++KI I GDYD+DG + ++++ L A+ IPDRI DGY Sbjct: 103 KDMDKAVEILRTKIAGNKKIRIIGDYDIDGVTATCILLKGLKRLGAQADTCIPDRIKDGY 162 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + L+++ +G I+T D G + + A +G+ V++ DHH V + Sbjct: 163 GLHEQLIDQASEDGIDTIVTCDNGIAAAGEIADARCRGMTVVLTDHHDVPFRDSENGREW 222 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A++NP + D ++C A V + ++ +Y D ++L +L A Sbjct: 223 IIPCADAVINPKQQDCSYPNKNICGAVVAWKLIWALYEKAGIDKS-----EILDFTELAA 277 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ L G NR V GL PGL+ALI N+ + ITA ++G+++GP I Sbjct: 278 IATVGDVMDLQGENRIIVKHGLRRLSETTRPGLQALICVNNLKGAEITAYHVGFVLGPCI 337 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL ++D QE LA L LNQ+R+ M EQA ++ T+ I Sbjct: 338 NASGRLDTATRALALLCTEDGQEAAKLAGDLYNLNQSRKAMTEQGKEQAINEIETEG--I 395 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+VV H + G++A R++E + +P F ++ E+G GSGRSIE + + Sbjct: 396 NKNRVLVVYLPECHESLAGIIAGRIRELYHKPVFVLTKSENGV-KGSGRSIEAYSMY--E 452 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 +L++ GGH MAAGL++ N R + + P ID + Sbjct: 453 ELVKCRDLLIQFGGHPMAAGLSMAEENVERFRKKLNENC--TLSENDLMPKVMIDVPMPI 510 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQA 543 S + L + L+ P+G GN P+FA N + +R+ +MT D A Sbjct: 511 SYLTETLTEELKVLEPFGKGNTKPLFAQRNLHVSKLRIFGKNRNVAKMTLTDSDGVWKDA 570 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F EF+ + VT + +N ++G + Q+ + Sbjct: 571 VFFGEAD-EFAEFVSMH--DTISVTYYPEINEYQGRRTLQVVIR 611 >gi|307703204|ref|ZP_07640150.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis ATCC 35037] gi|307623279|gb|EFO02270.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis ATCC 35037] Length = 739 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 172/590 (29%), Positives = 279/590 (47%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 6 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +++P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIIKESLEQLGAECRVHLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ ED + GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDDRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + +++S R + AHL++ S+ T + +AF Sbjct: 464 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEATFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 523 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVEGIQLFNIR 568 >gi|260583943|ref|ZP_05851691.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella elegans ATCC 700633] gi|260158569|gb|EEW93637.1| single-stranded-DNA-specific exonuclease RecJ [Granulicatella elegans ATCC 700633] Length = 771 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 170/594 (28%), Positives = 288/594 (48%), Gaps = 29/594 (4%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S + +W + E + I + + ++ ++ R + + ++FL+ S L Sbjct: 2 SFANAKWDLI-NNEIEESSKEIAKALGLSPLLIQICRRRGYQTEEQIQEFLSSS-PTLWH 59 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP ++ D +KA +RI QAI E I+IFGDYD DG S A++ L Y+P+R Sbjct: 60 DPYLMYDMEKAIQRIQQAIETDESILIFGDYDADGITSTAVLYETLEMMGAQVEYYLPNR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +DGYGPN + E+++ +G LIITVDCG +++++++A +Q DVIV DHH++ Sbjct: 120 FIDGYGPNIRVFEEYLEKGVSLIITVDCGIAAHESVEWAMSQQCDVIVTDHHEIPPVLPK 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 AYA+++P D G L AGV F + + L + L ++ + T+ Sbjct: 180 AYAVIHPRHPDGEYPFGDLSGAGVAFKLAHALLGELP-----------VELAEIACIGTI 228 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309 D+V L NR+ V GL + GL L + + I I + +G+ +GP +NA G Sbjct: 229 ADLVSLTDENRSLVKLGLQQLNQTERIGLSYLFQELQLIPGSIDEKTIGFQVGPCLNALG 288 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G++ G L + D + + + + N R+ + + ++A Q Sbjct: 289 RLGDATPGVALFTTFDDEVAQEVVTLMQQENAKRKQIVDDITKEALELAKAQI----DHK 344 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA 428 V+V+ WH G++G++A+R+ E+ +P+ + + DG GS RS F++ +S+ Sbjct: 345 VLVLAQSNWHEGVLGIVASRIVEQLQKPTIVLGIQSDGLMAKGSARSCAQFNLYDALSYC 404 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E L K GGH MAAGL+VE V + + +A L V I+ L+ S V Sbjct: 405 QE--TLAKFGGHHMAAGLSVETVMLPGFMEAIETYAKQHPELLEDEKVIPIEEALSLSQV 462 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546 N+ ID L++ PYG N P+F N + + + HL++T S+ ++ LQA+ F Sbjct: 463 NVEFIDSLQALKPYGTNNAEPIFKISNILVGQKQKIGAQQQHLKLTLNSEQNQ-LQALIF 521 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + V G L +N W+ ++ QL + D S + F + Sbjct: 522 NKGEW----ADSLNLQAEVEVIGTLEINEWQQNRLPQLMLKDISVKDALIFDWR 571 >gi|293364953|ref|ZP_06611670.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis ATCC 35037] gi|291316403|gb|EFE56839.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus oralis ATCC 35037] Length = 758 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 172/590 (29%), Positives = 279/590 (47%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 25 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLH-DPYL 82 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +++P+R DG Sbjct: 83 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIIKESLEQLGAECRVHLPNRFTDG 142 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 143 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 202 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 203 IVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 251 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 252 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 311 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 312 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 365 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ ED + GS RS+E DI + Sbjct: 366 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDDRAKGSARSVEAVDI--FEALDPHRD 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 423 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLET 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + +++S R + AHL++ S+ T + +AF Sbjct: 483 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEATFEVVAFGQGR 541 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 542 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVEGIQLFNIR 587 >gi|289434805|ref|YP_003464677.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171049|emb|CBH27591.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 781 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 177/593 (29%), Positives = 290/593 (48%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W +E +A+ + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAEE--EKAVQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYQSY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI ++I+++GDYD DG S+A++M+ L H NA+ YIP+R Sbjct: 61 FLFAEMDVAVARIKQAIELEQQILVYGDYDADGVTSIAVLMKTLRHLGANADFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + +G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNVAAFDMAKKQGIDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P + L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPNSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLREGANIGLGVLAKKASLKLEEATEETIGFGLAPRLNAIGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DNLGKVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRSIE F + + Sbjct: 347 VVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDSVTGIAKGSGRSIESFHLYQA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A ++ P KI+ +N + V + Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLAELELKLQEEAS-LLAEEDFRPALKIEERINLADVTV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 + I LE P+G NP P+F L+ + + HL+ E+++S+ TL AI F Sbjct: 464 SFIAQLEKLAPFGMDNPKPIFLLEGMHLKGTKRIGADKTHLKTMLEAKESDATLDAIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPSADVDVVGELSINEWNNIKKPQLRMMDVRIPHWQLFDVR 572 >gi|328954455|ref|YP_004371789.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobacca acetoxidans DSM 11109] gi|328454779|gb|AEB10608.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobacca acetoxidans DSM 11109] Length = 570 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 187/578 (32%), Positives = 303/578 (52%), Gaps = 21/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 RW Q ++++H +P++VA++L+NR ++ FL+PS+ L+P P Sbjct: 5 QRWRPYPSQP--ELVRDVSRRHQVPELVAQILLNRGLAQAGEIDSFLDPSLNRLLP-PGG 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D AA R+VQA+ E I I+GDYDVDG + AL+ FL YIP+R+ G Sbjct: 62 LQDLPSAAARLVQALEKGETIAIYGDYDVDGLTATALLRHFLESLGAAVISYIPNRLNQG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + S + + AQ+++TVDCG ++ + A + G+DVI+ DHH+V + PA A+ Sbjct: 122 YGLHESALSELAR-RAQVVVTVDCGISNASEARVARDLGLDVIITDHHEVPATLPPAIAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252 +NP R D L GV + + + LR+ +L + LDLVAL T D Sbjct: 181 LNPKRPDCGYAFKELAGVGVALNLALGLRAYLREMGWFARRPEPNLKAYLDLVALGTAAD 240 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL G+NR V +GL V + PG++AL + P++ + + + P +NA GR+ Sbjct: 241 VVPLAGVNRILVSQGLKVLAKSRRPGIEALKAVTHLEDRPVSLREVVFRLAPRLNAAGRM 300 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++ LL+++D + +LA LD LN+ R+ +E+ ++ AE ++L Q + Sbjct: 301 GQAQAALELLLTEDRDKARLLAGALDRLNRERQSLEAKIIRDAETQILQQGFG--NRPAL 358 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ G+ WHPG++G++AA+L E+F RP ++ ++G G GS RS+E FD+ K ++ E Sbjct: 359 VLAGEDWHPGVIGIVAAKLAERFFRPVALLT-LKNGVGRGSARSVEAFDLYKGLTSCQEH 417 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 L++ GGHA AAG T+ G F+ + + P +D V+ + ++ Sbjct: 418 --LLQFGGHAAAAGFTLAPDRVGDFRQAFEATVLQELGSEPKRPELAVDAVVTLAELDDE 475 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 L+ P+G GNP PV A + +L VV HL++ S+ + AIAF Sbjct: 476 FFFHLDRLRPFGQGNPEPVLACLSAQLVDSWVVGEKHLKLKLASE-GRIMTAIAF----- 529 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + V +N+++G + +LRVLD Sbjct: 530 --DQASLHPLRGCYDVAFGTRLNFFQGRNQPELRVLDL 565 >gi|255746912|ref|ZP_05420857.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholera CIRS 101] gi|262161545|ref|ZP_06030655.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae INDRE 91/1] gi|255735314|gb|EET90714.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholera CIRS 101] gi|262028856|gb|EEY47510.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae INDRE 91/1] Length = 545 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 171/538 (31%), Positives = 266/538 (49%), Gaps = 21/538 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + L D+A + AI ++I++ GD+D DGA S AL + L N + + Sbjct: 11 LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R DGYG +P ++++ I GA++I+TVD G +S + ++YA +G+ V+V DHH E Sbjct: 71 PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243 A+VNPN L GV F +++ + +RQ L+ L+D Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELID 190 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG++ALIE + A + G+ + Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359 GP INA GR+ + + G LL+ ++ +A +LD LNQ R+ +E M A + L Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 DD + +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370 Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + + GI++K GGHAMAAGLT+E NF R C F + + + Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGII 430 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535 DG L ++ ++L + GP+G P P+F K+ ++V HL++ E Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489 Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + IAF V + + K + + L +N +RG++ QL + Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 543 >gi|18311047|ref|NP_562981.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens str. 13] gi|18145729|dbj|BAB81771.1| probable single-strand DNA-specific exonuclease [Clostridium perfringens str. 13] Length = 592 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 174/603 (28%), Positives = 300/603 (49%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L DP ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G+DVI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNI--F 410 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 411 EELSKCKELISKFGGHPMAAGLSVEEKNIPLLRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|81428888|ref|YP_395888.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus sakei subsp. sakei 23K] gi|78610530|emb|CAI55581.1| Single-strand DNA-specific exonuclease RecJ [Lactobacillus sakei subsp. sakei 23K] Length = 770 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 178/580 (30%), Positives = 277/580 (47%), Gaps = 27/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W IT+ + +P A++L R + + DF+NP++ L DP Sbjct: 5 YEWQLKPVPTEDEL-QTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLH-DPYA 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D KA RI +AI N EKI I+GDYD DG S LM L + +Y+P+R DG Sbjct: 63 LHDMQKAIDRIQEAIVNGEKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN ++ I G QLI+TVD G + + + YA G+DV+V DHH++ SE A A+ Sbjct: 123 YGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEHGVDVVVTDHHELPSELPNAVAI 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P + G LC GV F V + + D LDL A+ TVCD+V Sbjct: 183 VHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDK-----------LDLAAIGTVCDIV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL+ NR V GL + PGL AL + + + A N+G+ IGP +NA GR+G+ Sbjct: 232 PLVDENRTLVSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGD 291 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LG +LL + D +E A ++ N+ R+ + + A + + Q ++ +V+ Sbjct: 292 ATLGVQLLTTLDDEEAVEQAQFIEQQNKKRQGLVQEITATAMTIA--ETPENQASATLVI 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A+ + E+ G+P+ ++ E G GSGRS+ F + + Sbjct: 350 AHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHL--FKALDAHRE 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +LV GGH MA GLT + + ++A L +D L + + L Sbjct: 408 LLVHFGGHHMAVGLTAKVDQLALIQTAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDL 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 L+ P+G+ NP P+ +L ++ + HL+M Q + L +AF G Sbjct: 468 YQALQQLAPFGSDNPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQ-QQLAVLAFN-KG 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + G L N WRG QL V D + Sbjct: 526 ALMPDLTAAED---VKLVGSLSENTWRGQTTLQLMVKDLA 562 >gi|301156119|emb|CBW15590.1| ssDNA exonuclease, 5'--> 3'-specific [Haemophilus parainfluenzae T3T1] Length = 574 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 165/562 (29%), Positives = 275/562 (48%), Gaps = 20/562 (3%) Query: 42 IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 ++ R+ +R++ L+ +++ ++ +P L +A +V A +KI+I GD+ Sbjct: 21 LLDRLYRSRHIKNSQE---LDRTLQSML-NPNQLHGIQQAVDLLVNAYQQQQKIVIVGDF 76 Query: 102 DVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160 D DGA S AL + L + +P+R GYG + + E + + QL++TVD G Sbjct: 77 DADGATSTALSVLALRMLGFTDVEYLVPNRFEQGYGLSVPVAEMAMEKDVQLLMTVDNGV 136 Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220 +S++ + Y QG+ V++ DHH A A+VNPN L GV F +++ Sbjct: 137 SSFEGVAYLKEQGVKVLITDHHLPPEILPNADAIVNPNLQQCGFPSKCLAGVGVAFYLML 196 Query: 221 LIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277 + R+ + LLDLVAL T+ DVVPL NR +GLM R ++ P Sbjct: 197 ALRAKFRELGIFTAETQPNFTELLDLVALGTIADVVPLDQNNRILAHQGLMRIRAKRCRP 256 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G+ AL E N + + +LG+ I P +NA GR+ ++G LL+++ QE A+ L Sbjct: 257 GIIALAEVANREVEKLCSADLGFAIAPRLNAAGRLDNMSVGVELLLAESMQEARAQALDL 316 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395 D LNQ R+ +E M +A + I + WH G++G++A+R+K+++ Sbjct: 317 DSLNQARKEIEQGMKLEALEICRNLTALSDELPMGIALFQPDWHQGVLGIVASRIKDQYH 376 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNF 453 RP A + +++G GS RSIEG + ++ +++K GGHAMAAGL+++ F Sbjct: 377 RPVIAFAQDQEGILKGSARSIEGLHMRDVLERIHSQHPDMILKFGGHAMAAGLSIKESFF 436 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 F + + + V DG L A+ +I ++++S GP+G P PVF Sbjct: 437 PDFQKIFNQTVQDWLNEDQLQGVIWTDGELQANEFSIETAEVIKSGGPWGQAFPEPVFDG 496 Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R + HL+M E ++ L AIAF + + + K+ Sbjct: 497 E-FKIFEQRAIGQNQNHLKMLVEPKNGGPLLDAIAFNIDTRYYPDLSI----KQAKFAYK 551 Query: 571 LCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL V P+ Sbjct: 552 LEINEFRGNRNLQLLVDYIEPI 573 >gi|254797063|ref|YP_003081901.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia risticii str. Illinois] gi|254590309|gb|ACT69671.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia risticii str. Illinois] Length = 577 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 208/585 (35%), Positives = 314/585 (53%), Gaps = 21/585 (3%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 SI G W+ L + QK + VA VL NR + D FLNP ++ +P Sbjct: 6 KSIKGSVWIH--NHVPSKELLFLRQKFGLSLTVASVLYNRVGADDDIATFLNPKLKHTLP 63 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP L + RI++AI EKI+I+GDYDVDGA S AL+ + ++YIPDR Sbjct: 64 DPFSLLGMKEGIERILRAISEDEKIVIYGDYDVDGATSSALLKNYFREIGKKVDIYIPDR 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 I +GYGPN + + EG L ITVDCG ++ ++ A G+D+IV+DHH P Sbjct: 124 ITEGYGPNKAAFMQLKKEGYTLCITVDCGILAHAEIEVANTIGLDIIVVDHHISADVIPP 183 Query: 191 AYALVNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVA 246 A A++NPNR+D +++ HL A GV FL+L+ + +LR +L++ LDLVA Sbjct: 184 ATAVINPNRIDQPNVAYTEHLAAVGVSFLLLIGLNVVLRAKGFFDNKKEPNLINYLDLVA 243 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCDVV L G+NRA+V +GL V ++ N GL L + + + S + A +LGY+IGP IN Sbjct: 244 LGTVCDVVRLTGINRAFVKQGLKVIDQRKNLGLSILTKELKLFSTLEAYHLGYVIGPHIN 303 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGRI +S+LGSRLL + + E E +A L VLN R+ +E A L++ +V + Sbjct: 304 AGGRISQSSLGSRLLSTQNPAEAEEIATTLCVLNLKRKEIERAALQEVITQV-----EKT 358 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +I+ WH GI+G++A+R+K+ + P+ +S + S RSI+G +IG V Sbjct: 359 SKKIILAASANWHQGIIGIVASRIKDLYHLPTIILS-IDGNIAKASARSIKGANIGMAVI 417 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A E G++++GGGH MAAG + E + +FF+++ + T ID L Sbjct: 418 AAKESGLIIEGGGHKMAAGFSCETEKIPAIREFFEEYFKEV----DTQESIHIDSELYID 473 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFES-QDSETLQAI 544 + L D L+ P+G+GNP P F + ++ + RV+ H+ T + ++ I Sbjct: 474 TITSDLCDDLKILAPHGSGNPEPKFVLKDVRVVTSRVIGEDGHIACTLRDVRTHTVIRGI 533 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AFR L E ++ + + S + Q+ + DA Sbjct: 534 AFRA-DPILKEAILNCEVTNF--LVKIKADNLGYSNKPQVIIEDA 575 >gi|262190654|ref|ZP_06048888.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae CT 5369-93] gi|262033468|gb|EEY51972.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae CT 5369-93] Length = 545 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 171/538 (31%), Positives = 266/538 (49%), Gaps = 21/538 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + L D+A + AI ++I++ GD+D DGA S AL + L N + + Sbjct: 11 LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R DGYG +P ++++ I GA++I+TVD G +S + ++YA +G+ V+V DHH E Sbjct: 71 PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243 A+VNPN L GV F +++ + +RQ L+ L+D Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMAEPKLMELID 190 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG++ALIE + A + G+ + Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359 GP INA GR+ + + G LL+ ++ +A +LD LNQ R+ +E M A + L Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 DD + +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370 Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + + GI++K GGHAMAAGLT+E NF R C F + + + Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGII 430 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535 DG L ++ ++L + GP+G P P+F K+ ++V HL++ E Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489 Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + IAF V + + K + + L +N +RG++ QL + Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 543 >gi|110799179|ref|YP_696745.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens ATCC 13124] gi|110673826|gb|ABG82813.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens ATCC 13124] Length = 592 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 175/603 (29%), Positives = 302/603 (50%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L +P ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NNPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G+DVI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEVPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADTLAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I + Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +S E ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|255320014|ref|ZP_05361210.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter radioresistens SK82] gi|262380520|ref|ZP_06073674.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter radioresistens SH164] gi|255302882|gb|EET82103.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter radioresistens SK82] gi|262297966|gb|EEY85881.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter radioresistens SH164] Length = 570 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 169/560 (30%), Positives = 271/560 (48%), Gaps = 20/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + +A +L R V+ + L ++ L+ L ++A I QAI +KI+I Sbjct: 20 HVSPFLAHILARRGVASEQE---LELRLKYLLSP--CLKGLEQAVEIINQAIDQQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L + +PDR GYG P++ + F L+ITV Sbjct: 75 VGDYDADGATSTALMILALRDMGADVAYLVPDRFKYGYGLTPAIADLAFTRFTPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S++ ++ A + G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHEGVKQAQDHGMQVIITDHHLTTKETPAAEAVVNPNQLGCNFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + ++ ++ ++ LDLVAL T DV L NR V GL ++Q Sbjct: 195 YVLANLCSFRKRADQ--SVSNITQYLDLVALGTYADVASLDYNNRILVDAGLKRIQQQQC 252 Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL++ + A++LG+++GP INA GR+ +G L++ D + LA Sbjct: 253 RPGILALLDIAGREPAALKAQDLGFVLGPRINAAGRMETMEIGIECLLAPDLENAYPLAR 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E+ M ++A + Q +++ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIERRQIEAQMKQEALRYLEQLQLSKENIPPALIMFEEHWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + +EDG GS RS+EG I + ++ GGHA AAGLT+ + Sbjct: 373 FHRPSIVFAADEDGIHIKGSARSVEGIHIRDCIEQIAEQYPHLVRYFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F F + + + + DG L A+ + +D++E GP+G P+PV Sbjct: 433 EHFLEFKQVFIQLIAGM-DETLLSATLWTDGELPVEALVLDTVDLIEKLGPWGQKFPSPV 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R + HL++ + + + AIAF F ++ + Sbjct: 492 FEGI-FKVVDFRWLKETHLKLRLALNNGQVVDAIAFNAKDR----FEYDPENDQVDLVYE 546 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L N + G+ QLR++ Sbjct: 547 LERNEFNGNTGLQLRIIHLK 566 >gi|312867396|ref|ZP_07727605.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parasanguinis F0405] gi|311097097|gb|EFQ55332.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parasanguinis F0405] Length = 741 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W LA+ +K + VA +L R + + + +DFL P + L DP Sbjct: 4 SKYDWQLASPSAD-EAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI +AI + E+I+++GDYD DG S ++M L +Y+P+R Sbjct: 62 YLLHDMEKAVERIRRAIEDYEQILVYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G A+ A G+DVIV DHH + A Sbjct: 122 DGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P D +L GV F + + + + LLDLVA+ T+ Sbjct: 182 YAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVP-----------VDLLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL V + GL+ L+E I + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ + N+ R+ + A+ ++A+ V S Sbjct: 291 LDDPNPAIELLTGFDDEEAREIALMIHQKNEERKEIVQAIYDEAKTMV------DPSLSA 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P +S EDG+ GS RS E +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVVVLS-IEDGRAKGSARSPESVNI--FEALDPH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L + L + ID L+ + + + Sbjct: 402 RSLFVAFGGHAGAAGMTLEVDQLPALSQALTNYIREEKIDLSSKSSLAIDEELHLTELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + + P+G N PVF N K++ R + HL++ +D T + +AF + Sbjct: 462 ETLKNFDRLSPFGMDNKKPVFLVRNFKVEGARSMGAGNTHLKLKISQED-ATFEVVAFGL 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ + + + L VN W G QL ++DA F + Sbjct: 521 GSLEA----EFAQAQDLELAVQLSVNQWNGQTTLQLMLVDARVDGVQLFNIR 568 >gi|168212898|ref|ZP_02638523.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens CPE str. F4969] gi|170715541|gb|EDT27723.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens CPE str. F4969] Length = 592 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 175/603 (29%), Positives = 303/603 (50%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L DP ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G++VI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMNVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEVPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADTLAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ +VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I + Sbjct: 354 MENDNVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +S E ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|306833197|ref|ZP_07466326.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus bovis ATCC 700338] gi|304424564|gb|EFM27701.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus bovis ATCC 700338] Length = 736 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 177/593 (29%), Positives = 286/593 (48%), Gaps = 34/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S + W ++ + N +T+K + ++ +++L +R V + FL+ + L DP Sbjct: 4 SKYNWKNIEKEPD-NGFFELTKKEKLTELASQILYSRGVDTAEKLIQFLSTDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S ++M L A +Y+P+R Sbjct: 62 YLLHDMDKAVNRIRQAIENYEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G +A+ YA +QG+DVIV DHH + +E A Sbjct: 122 DGYGPNESVYKYFIEQQNVSLIITVDNGVAGNEAIAYAQSQGVDVIVTDHHGLPAELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + +L GV F V + + +LDLVA+ T+ Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL LI+ ++ + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKQTERIGLIELIKVSDVDMADVNEETVGFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A ++ N+ R+ + + ++A + V + V Sbjct: 291 LDDPNPAVELLTGFDDEEAHNIAKMINAKNEERKEIVQKIFDEAMSMVDLE------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEQIAQPVIVLN-IEDGIAKGSARSIEAINI--FHALDEH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N +L + L ID VL S +N+ Sbjct: 402 RDLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEINL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + LE P+G NP PVF + ++ R + HL++ +Q + + +AF Sbjct: 462 DTVHSLEKLAPFGMDNPKPVFEIKDFVVKQARTMGQNGAHLKLKI-AQGTTAIDLVAFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 + + + + L +N W G QL + DA VEG + Sbjct: 521 GHL----AQEFQQVQNLCLATTLSINKWNGQTTVQLMLEDAR-VEGVQLIDIR 568 >gi|306829077|ref|ZP_07462267.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis ATCC 6249] gi|304428163|gb|EFM31253.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus mitis ATCC 6249] Length = 739 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 175/591 (29%), Positives = 282/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 6 YEWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIQNEESLKKFLEPSLEDLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+I+GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHSDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRIMVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ +++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADASGKNKLNLDEELDLETLSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + ++S R + HL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPVFYIRDFNVESARSMGAGNTHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|258539770|ref|YP_003174269.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus rhamnosus Lc 705] gi|257151446|emb|CAR90418.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus rhamnosus Lc 705] Length = 764 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 163/585 (27%), Positives = 275/585 (47%), Gaps = 27/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + ++W Q ++Q A+P +A +L R + + + F++P I L DP Sbjct: 2 TQYQWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKNKPDYEAFVHPDISRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI +KI I+GDYDVDG S ++M+ L +++IPDR Sbjct: 60 FALHDMDKAVARILEAIEQDQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G + A G+DV+V DHH++ A Sbjct: 120 DGYGPNAEVYTYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPETLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVKLTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + S + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMA--QTPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E +P+ ++ ++G GSGRSIE + + + A Sbjct: 347 LLASKGWHEGVVGIVASKVVEATCKPTLIMNIADNGVTAKGSGRSIEAYHLFNALEPA-- 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +V GGH MA GLT + + + A ++ + P I L + + Sbjct: 405 KDKMVHFGGHHMAVGLTAKTAELSAIHAQMEAAASTMLK-TVPKPALPIAARLEVGDLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 +++ P+G GNP P F+ +Q+++ + + + F+ + I F Sbjct: 464 EHYELIRQLAPFGQGNPEPTFSVRPQVVQNVKPIGKENAHLRFQIDQG--VNVIGFGFG- 520 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + L N W+G+ QL + D + + Sbjct: 521 ---SAAATLAEAQAIKLAVQLDQNTWQGNTSLQLMLKDYAVKQPQ 562 >gi|322389845|ref|ZP_08063386.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parasanguinis ATCC 903] gi|321143426|gb|EFX38863.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parasanguinis ATCC 903] Length = 741 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W LA+ +K + VA +L R + + + +DFL P + L DP Sbjct: 4 SKYDWQLASPSAD-EAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI +AI + E+I+I+GDYD DG S ++M L +Y+P+R Sbjct: 62 YLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G A+ A G+DVIV DHH + A Sbjct: 122 DGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P D +L GV F + + + + LLDLVA+ T+ Sbjct: 182 YAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVP-----------VDLLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL V + GL+ L+E I + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ + N+ R+ + ++ ++A+ V S Sbjct: 291 LDDPNPAIELLTGFDDEEAHEIALMIHQKNEERKEIVQSIYDEAKTMV------DPSLSA 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P +S EDG+ GS RS E +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVVVLS-IEDGRAKGSARSPESVNI--FDALDPH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T++ L + L + ID L+ + + + Sbjct: 402 RSLFVAFGGHAGAAGMTLDVDQLPALSQALTDYIAEQEIDLSSKSSLAIDEELHLTELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + + P+G N PVF N K++ R + HL++ +D T + +AF + Sbjct: 462 ETLKSFDRLSPFGIDNKKPVFLVRNFKVEGARSMGAGNTHLKLKISQED-ATFEVVAFGL 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ + + + L VN W G QL ++DA F + Sbjct: 521 GSLEA----EFAQAQDLELAVQLSVNQWNGQTTLQLMLVDARVDGVQLFNIR 568 >gi|308050771|ref|YP_003914337.1| exonuclease RecJ [Ferrimonas balearica DSM 9799] gi|307632961|gb|ADN77263.1| exonuclease RecJ [Ferrimonas balearica DSM 9799] Length = 573 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 276/564 (48%), Gaps = 19/564 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ ++ R V+ L ++ L+ +P L+ + A + A+ ++I+I Sbjct: 19 LPPLLRQIYARRGVTGA---HELVTELKGLL-NPATLSGAPEGAAMLADALAAQKRILIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL M L + +P+R GYG +P L+E GA+++ITVD Sbjct: 75 GDFDADGATSSALCMLALRAFGGRHLDFLVPNRFDFGYGLSPELVEVAAERGAEVLITVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +++ + A G+ VIV DHH A ++NPNR + GV F Sbjct: 135 NGISAHAGVDAAKAAGMTVIVTDHHLPGETLPDADVIINPNRDACPFASKSMAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + LR+ ++ LLD+VAL TV DVVPL NR V +GL R Sbjct: 195 LMLALRGELRRRQWFAQQGLNEPNMAELLDVVALGTVADVVPLDPNNRLLVHQGLQRIRA 254 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG++AL+E N + A +LG+ +GP +NA GR+ + LG L++D+ E + Sbjct: 255 GRCRPGIRALLEVSNREPSRLVASDLGFTVGPRLNAAGRLDDMALGIECLLTDNMMEARL 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A +LD LN+ RR +E M E+A + + + WH G++G+LA+R+K Sbjct: 315 IASQLDALNRERREIEQGMQEEAIRVLERLDLGKDLPWGVALYQSDWHQGVIGILASRIK 374 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 E++ RP A + G+ GS RSI G + ++ G+++K GGHAMAAGL+++ Sbjct: 375 ERYHRPVIAFADAGGGEVKGSARSIPGLHMRDLLERIDTQHPGLILKFGGHAMAAGLSLK 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 ++ R + + + T DG L A+ + + ML AGP+G G P Sbjct: 435 EQDYPRFAELYDAEVRVQLDEAALTGELLSDGELTAADLCLDTARMLREAGPWGQGFAEP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ R+V HL++ E++ L AIAF V + + + Sbjct: 495 MFDGR-FRILDQRLVGQKHLKLALETECGGRQLDAIAFNVDLGTWP----NGAIQWVELV 549 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L +N+W+G QL V P Sbjct: 550 YKLDINHWQGRDSVQLLVEHLKPA 573 >gi|237729832|ref|ZP_04560313.1| ssDNA exonuclease RecJ [Citrobacter sp. 30_2] gi|226908438|gb|EEH94356.1| ssDNA exonuclease RecJ [Citrobacter sp. 30_2] Length = 577 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 182/566 (32%), Positives = 284/566 (50%), Gaps = 20/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ +R V L S++ ++P L +KA + A +I++ Sbjct: 21 DLPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQHLNGVEKAVEILYNAFRAGTRIIV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TV Sbjct: 77 VGDFDADGATSTALSILAMRALGCSNVDYLVPNRFEDGYGLSPEVVDQAYARGAQLIVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ +++A GI V+V DHH A A++NPN D L GV F Sbjct: 137 DNGISSHAGVEHARTLGIPVVVTDHHLPGDTLPGAEAIINPNLHDCEFPSKSLAGVGVAF 196 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +++ + LR +L LLDLVAL TV DVVPL NR +GL R Sbjct: 197 YLMLALRTFLRDKGWFDERGIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIR 256 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 257 AGKCRPGIKALLEISNRDPLKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R Sbjct: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASR 376 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +KE+F RP A + DG GSGRSI+G + + G+++K GGHAMAAGL+ Sbjct: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHPGMIIKFGGHAMAAGLS 436 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 +E F R F + + + DG LNAS + + + ML AGP+G P Sbjct: 437 LEEAQFERFQQRFGELVTEWLDPSLLQGEVVSDGPLNASEMTMEVAQMLRDAGPWGQMFP 496 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + +L R+V HL++ E L IAF V T + + + + Sbjct: 497 EPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTTCWPD----NGVREVQ 551 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ Q+ + + P+ Sbjct: 552 LAYKLDINEFRGNRSLQIIIDNIWPL 577 >gi|87311088|ref|ZP_01093212.1| single-strand DNA-specific exonuclease [Blastopirellula marina DSM 3645] gi|87286179|gb|EAQ78089.1| single-strand DNA-specific exonuclease [Blastopirellula marina DSM 3645] Length = 587 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 172/593 (29%), Positives = 273/593 (46%), Gaps = 24/593 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW R + Q +P +VA++L++R + + + FL L DP + Sbjct: 3 KRWRIFPHDA--ARIRQLEQSAGVPPVVAQLLISRGICDPNAIRGFLEAKFSDLR-DPDL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L A RI AI +I I+GDYD DG A++ R L + Y+P R +G Sbjct: 60 LPGVTAAVERIDAAIKAKRRITIYGDYDADGITGSAILYRCLQTLGADVGYYVPSRFDEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +EK + G L+ITVDCG S A G+++I+ DHH++ A A+ Sbjct: 120 YGLNSEALEKLVQRGTHLLITVDCGIASVKEADRAKELGLELIITDHHEMAERLPDAAAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL----DLVALATV 250 V+P G LC AGV F + + + N + L + L L ++ TV Sbjct: 180 VHPRLPGTNYPFGGLCGAGVAFKLAWALCQK--ASNARRVTDRLRNFLLTAVGLASIGTV 237 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITAENLGYMIGPSINAG 308 DVVPL+ NR V GL R PG++AL+E +T+E++G+MIGP +NA Sbjct: 238 ADVVPLLDENRLIVRHGLNCLREHSVPGIEALLEVAKLGDKKQLTSEDIGFMIGPRLNAA 297 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+G++ L LL +D + LA + LN +R +E ++ A+ + + D Sbjct: 298 GRLGQAQLAIELLTTDSPERARALAEYIHQLNDSRGSLERSINLAAQKQAKEE-FDPVND 356 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVS 426 +V+ G WH G++G++A RL EK+ RP I+ ++ G +GS RS G ++ + + Sbjct: 357 PALVLAGHGWHVGVIGIVAGRLAEKYNRPVILIALDQAGVKPGVGSARSACGLNLHEALK 416 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 E L+ GGHA AAGL + F ++A + V ID S Sbjct: 417 SC--EHHLLGCGGHAAAAGLQISPDKIEAFRAEFLEYAASEVTDESQIAELAIDAEAPIS 474 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVV--NLAHLQMTFESQDSETLQA 543 + I +E P+GAGN P+ K + + + HL + E ++ Sbjct: 475 QLTFKTITQIEMLAPFGAGNRRPIMCASGAKLVDKPKRIGGGERHLSVHLEHH-GVRIRG 533 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 +AF E L + G + + +N +RG +L+++D P E ++ Sbjct: 534 VAFGQGD--WAEPLAKHDG-LLDIAFQPVINNFRGRNNVELQLVDWKPHEANN 583 >gi|254496446|ref|ZP_05109323.1| single-stranded-DNA-specific exonuclease RecJ [Legionella drancourtii LLAP12] gi|254354302|gb|EET12960.1| single-stranded-DNA-specific exonuclease RecJ [Legionella drancourtii LLAP12] Length = 578 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 173/571 (30%), Positives = 269/571 (47%), Gaps = 24/571 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 PD++ R+ R ++ L+ ++ L+P +L D A R+ A+ ++I+I Sbjct: 17 NTPDVLNRIFATRGITEA---SQLDKQLQTLLP-FNLLKGIDDACLRLETALRGQQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S A+ + L + +P+R GYG P ++E LIITV Sbjct: 73 IGDFDADGATSTAVAITALRAMGAKFIDYLVPNRFEFGYGLTPQIVEVASKWQPHLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S+D ++ A GIDV++ DHH A A+VNPN+ + GV+F Sbjct: 133 DNGIASFDGVEKANELGIDVLITDHHLPADTIPNACAIVNPNQKGCEFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVA 271 V++ + R L ++ S LDLVAL TV DVV L NR V +G+ + Sbjct: 193 YVMLALRRHLTNAGWFSEMHIPEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMARIR 252 Query: 272 RRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+KALIE + + +LG+ I P +NA GR+ + LG LIS D Q+ Sbjct: 253 QGHCRDGIKALIEVAGRDCARLRESDLGFAIAPRLNAAGRLDDMALGIECLISSDLQQAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-----VVEGDRWHPGIVGL 385 +LD LNQ R+ +E+ M EQA + + WH G++G+ Sbjct: 313 NYCQQLDELNQERKQIETEMKEQAMLALDKLAASNDYKGKHLPIALCLFDKTWHQGVIGI 372 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMA 443 LA R+KE++ RP A + DG+ GS RS+ +I +++ G++VK GGHAMA Sbjct: 373 LAGRMKERYHRPVIAFAEVSDGELKGSARSVPDLNIRDVLAAIDKDYPGLIVKFGGHAMA 432 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 AGL++ + D + + DG L + ++ +++ AGP+G Sbjct: 433 AGLSIHPQSLSAFRDALAAEVNKHLDLSQCEGELFTDGPLQSDEFSLETAQLIQQAGPWG 492 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRG 562 PVF ++ R+V HL+MT S Q + + AIAF V R Sbjct: 493 QQFAEPVFD-NVFEVLDQRLVGQKHLKMTLVSKQGGQQVDAIAFNVDLKAWP----NHRA 547 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 K +H L +N+++G R QL + + E Sbjct: 548 KYVHAAYKLDINFFQGRTRLQLMIQAMNVAE 578 >gi|110803111|ref|YP_699345.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens SM101] gi|110683612|gb|ABG86982.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens SM101] Length = 592 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 173/603 (28%), Positives = 300/603 (49%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L DP ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A G+DVI+ DHH + Sbjct: 121 GMNSKRVKILNEEGTKVILTCDNGIAAFEEIDLAEKLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQEEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ +VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I Sbjct: 354 MENDNVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNI--F 410 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 411 EELSKCKELISKFGGHPMAAGLSVEEKNIPLLRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSIDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|283798560|ref|ZP_06347713.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. M62/1] gi|291073708|gb|EFE11072.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. M62/1] gi|295092426|emb|CBK78533.1| exonuclease RecJ [Clostridium cf. saccharolyticum K10] gi|295115771|emb|CBL36618.1| exonuclease RecJ [butyrate-producing bacterium SM4/1] Length = 569 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 166/580 (28%), Positives = 275/580 (47%), Gaps = 31/580 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W+ + I ++ I + ARV+ NR + + + +L ++ L P +L Sbjct: 6 WMLQTKRADFGV---IAERFGIDPVTARVIRNRGIEGMENIERYLYGNLDGLY-SPWLLK 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D A + Q I ++I I GDYD+DG S ++ L A+ IPDRI DGYG Sbjct: 62 DMKPAVEILRQKITAGKRIRIVGDYDIDGVCSTYILYTALRRLGAEADYAIPDRIKDGYG 121 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-----SEEIPA 191 N S++ + +G I+T D G +++ + A G+ VIV DHH+V PA Sbjct: 122 INESIIREAHEDGIDTILTCDNGISAFSQISLAKEFGMTVIVTDHHEVPLDAEAEVIPPA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VNP + D +C A V + ++ +Y + L +L+ A+ATV Sbjct: 182 DAVVNPKQRDCRYPFPEICGAVVAYKLVEALYEEYGI-----AREEWLDMLEFAAIATVG 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 DV+ L NR V GL N GLK L E+ N+ S ITA ++G++IGP +NAGGR Sbjct: 237 DVMRLQDENRIIVKYGLRRMAETKNLGLKKLAEKNNLDLSTITAYHIGFVIGPCLNAGGR 296 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + L +L+++ E E LA +L LN R+ M +A+ T+ D + V Sbjct: 297 LQTAKLALSMLLAETEDEAEALAQELKSLNDMRKDMTEQWTAEAKLLADTRYRDDK---V 353 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV H + G++A RL+E +P+ ++ E+ GSGRSIE + + + Sbjct: 354 LVVFLPECHESLAGIIAGRLREYCQKPALVLTRGEEAV-KGSGRSIEAYHM--FKKLSEV 410 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +L+K GGH MAAGL++ N + ++ + ID + + Sbjct: 411 KELLLKFGGHPMAAGLSLLEENIEPFRKALNE--NSGLTEEDFKAKVWIDVPMPIDYIKE 468 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRV 548 L++ L+ P+G GN P+FA +++S RV+ ++M E Q + + F Sbjct: 469 RLVEELKILEPFGQGNEKPLFAQKGVRIRSCRVIGKNKNVVKMVLEGQGGRAMDGMLF-- 526 Query: 549 YGTPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVL 587 T F + G+R + + + +N + GS+ Q+ + Sbjct: 527 --TDGLAFEEERNGRRMLDIVYYPEINEYNGSRNIQVVIR 564 >gi|88860262|ref|ZP_01134900.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Pseudoalteromonas tunicata D2] gi|88817460|gb|EAR27277.1| Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [Pseudoalteromonas tunicata D2] Length = 580 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 172/562 (30%), Positives = 275/562 (48%), Gaps = 19/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ ++ +R V LN + L+ +L D A+ +++A+ N +KI+I Sbjct: 25 LHPVIKQIYASRGVKHSQE---LNNNAASLL-SFNLLKGIDTASEILIKALKNQQKILIV 80 Query: 99 GDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S A ++ L ++ + +P+R GYG +P+L ++ + GA L+ITVD Sbjct: 81 GDFDADGATSTATLVSGLKMFGFLHVDYLVPNRFELGYGLSPALAKQVVALGADLLITVD 140 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G + ++ G+ VIV DHH + A A+VNPN+ L GV F Sbjct: 141 NGISCVAGVEIVKAAGMQVIVTDHHLPGEQLPAADAIVNPNQHGCSFPSKSLAGVGVAFY 200 Query: 218 VLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +LV + LR + ++ LLDLVAL TV DVV L NR V +GL R Sbjct: 201 LLVALRHYLRIEQWFANLGQAEPNIAQLLDLVALGTVADVVALDANNRILVHQGLARIRS 260 Query: 274 -QGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 Q PG+ ALIE I + ++A + G+ + P +NA GR+ + +LG L+S + + Sbjct: 261 GQTRPGIAALIEVAKRIPARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSPEINHAKR 320 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E +M +A+ + Q + + D WH G++G+LA RL Sbjct: 321 IAGELDSLNIERREIEQSMQVEAQVALDKLLKAQQSVPDAVCLYQDDWHQGVIGILAGRL 380 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTV 448 KEK+ RP+ + ++ + GS RSIEG + + + ++K GGHAMAAGL++ Sbjct: 381 KEKYHRPTIIFALGDNDELKGSCRSIEGLHMRDALEAINTQHPDLIIKFGGHAMAAGLSI 440 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + NF R F I+ + DG L + + +++ +GP+G Sbjct: 441 QANNFERFKAVFLDAVSAILTPEHKQSLVLTDGELPSECYTLDFAQLIKQSGPWGQAFAE 500 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 PVFA L R+V HL++ + + L AIAF V + ++H Sbjct: 501 PVFADT-FMLIQQRLVGEKHLKLVLKHRSGLLLDAIAFNVDLQRWP----NAAVSQVHAV 555 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L +N +RG QL V + Sbjct: 556 FVLDINEFRGKFSLQLLVRELQ 577 >gi|229552401|ref|ZP_04441126.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus rhamnosus LMS2-1] gi|229314227|gb|EEN80200.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus rhamnosus LMS2-1] Length = 764 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 164/585 (28%), Positives = 276/585 (47%), Gaps = 27/585 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + ++W Q ++Q A+P +A +L R + + + F++P I L DP Sbjct: 2 TQYQWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKNKPDYEAFVHPDISRLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI++AI +KI I+GDYDVDG S ++M+ L +++IPDR Sbjct: 60 FALHDMDKAVARILEAIEQDQKITIYGDYDVDGLTSSSIMLETLQSLGAEPDVFIPDRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + G QL+ITVD G + A G+DV+V DHH++ A Sbjct: 120 DGYGPNAEVYTYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPETLPHAV 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + G L AGV F V + L L +DL AL T+ D Sbjct: 180 AVVHPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 +V L NR GL + + Q GL A+++ + + +G++IGP +NA GR+ Sbjct: 229 LVKLTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRM 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++N G LL + + LA ++ LNQ R+ + S + ++A Q + Q A + Sbjct: 289 GDANPGVTLLTTFEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMA--QTPENQAAKTL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G+VG++A+++ E G+P+ ++ ++G GSGRSIE + + + A Sbjct: 347 LLASKGWHEGVVGIVASKVVEATGKPTLIMNIADNGVTAKGSGRSIEAYHLFNALEPA-- 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +V GGH MA GLT + + + A ++ + P I L + + Sbjct: 405 KDKMVHFGGHHMAVGLTAKTAELSAIHAQMEAAASTMLK-TVPKPALPIAARLEVGDLTL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 +++ P+G GNP P F+ +Q+++ + + + F+ + I F Sbjct: 464 EHYELIRQLAPFGQGNPEPTFSVRPQVVQNVKPIGKENAHLRFQIDQG--VNVIGFGFG- 520 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + + + L N W+G+ QL + D + + Sbjct: 521 ---SAAATLAEAQAIKLAVQLDQNTWQGNTSLQLMLKDYAVKQPQ 562 >gi|87122935|ref|ZP_01078799.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp. MED121] gi|86161784|gb|EAQ63085.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp. MED121] Length = 579 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 275/565 (48%), Gaps = 21/565 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P + R+L +RN++ + ++ + L+ P L A + AI EKI+I Sbjct: 25 LPLTMQRILQSRNIASEAELEY---RLASLLR-PNELLGLTPAVTILADAIEAGEKILIV 80 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S +L + + + +P+R GYG P ++E +++TVD Sbjct: 81 GDFDADGATSTSLGILAMQAMGAIDPEFLVPNRFEYGYGLTPEIVEVAKESKPAVLVTVD 140 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + +Q A + GI V+V DHH + A A+VNPN+ + GV+F Sbjct: 141 NGISSIEGVQAAKSYGIKVVVTDHHLPGDDVPQADAIVNPNQHGCGFNSKAMAGVGVIFY 200 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 V+ + L+ + LDLVAL TV DVVPL NR V +GL + Sbjct: 201 VMSGLRAELKARRWFELQHIPEPRMADYLDLVALGTVADVVPLDANNRILVKQGLQRIQA 260 Query: 274 Q-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 PG+ AL+E N S I A +LG+ +GP +NA GR+ + +LG L++ ++Q+ + Sbjct: 261 GFARPGILALLEVANRDVSQIKASDLGFAVGPRLNAAGRLDDMSLGIACLLTSNAQQAKR 320 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARL 390 LA +LD LN+ R+ +ES M +QAE + D Q + + D WH G++G+LA+R+ Sbjct: 321 LAQELDQLNRERKDIESEMKQQAEFALEKIVADEQDLPNGMCFYDDTWHQGVIGILASRM 380 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 K+K RP A + +D + GS RSI G I + +L K GGHAMAAG+++ Sbjct: 381 KDKCYRPVIAFAKVDDEEIKGSARSIPGLHIRDALDLLAKRYPHLLSKFGGHAMAAGMSI 440 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + ++ F + +V A DG L A +++ +++ GP+G P Sbjct: 441 KEAHYPEFVKAFDEVVTELVSASDLEDCLLTDGSLRAEDFSLSFAELIRQCGPWGQMFPE 500 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 PVF +L R+V HL++ + + AIAF + + ++ V Sbjct: 501 PVFDG-VFELIQQRIVGQKHLKLLLREPNEGLLIDAIAFFIDLEQWP-----NNAEQARV 554 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG + QL V V Sbjct: 555 VFKLDINEFRGQRNIQLLVDYIEAV 579 >gi|325578212|ref|ZP_08148347.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parainfluenzae ATCC 33392] gi|325159948|gb|EGC72077.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parainfluenzae ATCC 33392] Length = 575 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 168/562 (29%), Positives = 277/562 (49%), Gaps = 20/562 (3%) Query: 42 IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 ++ R+ +R++ L+ +++ ++ +P L +A +V+A +KI+I GD+ Sbjct: 21 LLDRLYRSRHIKNSQE---LDRTLQSML-NPNQLYGIQQAVDLLVEAYQQQQKIVIVGDF 76 Query: 102 DVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160 D DGA S AL + L + +P+R GYG + + E + +G QL++TVD G Sbjct: 77 DADGATSTALSVLALCMLGFTDVEYLVPNRFEQGYGLSVPVAEMAMEKGVQLLMTVDNGV 136 Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220 +S++ + Y QGI V++ DHH A A+VNPN L GV F +++ Sbjct: 137 SSFEGVAYLKEQGIKVLITDHHLPPEILPNADAIVNPNLQQCDFPSKCLAGVGVAFYLML 196 Query: 221 LIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277 + R+ + LLDLVAL T+ DVVPL NR +GLM R ++ P Sbjct: 197 ALRAKFRELGIFTAETQPNFTELLDLVALGTIADVVPLDQNNRILAHQGLMRIRAKRCRP 256 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G+ AL E N + + +LG+ I P +NA GR+ ++G LL+++ QE A+ L Sbjct: 257 GIIALAEVANREVEKLCSADLGFAIAPRLNAAGRLDNMSVGVELLLAESMQEAREQALDL 316 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395 D LNQ R+ +E M +A + I + WH G++G++A+R+K+++ Sbjct: 317 DSLNQARKEIEQGMKLEALEICRNLTALSDELPMGITLFQKDWHQGVLGIVASRIKDQYH 376 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNF 453 RP A + +++G GS RSIEG + ++ +++K GGHAMAAGL+++ F Sbjct: 377 RPVIAFAQDQEGIIKGSARSIEGLHMRDVLERIHSQHPDMILKFGGHAMAAGLSIKESFF 436 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 F + + + V DG L A+ +I ++++S GP+G P PVF Sbjct: 437 SDFQKIFNQTVQDWLNEDQLQGVIWTDGELQANEFSIETAEVIKSGGPWGQAFPEPVFDG 496 Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 K+ R + HL+M E ++ L AIAF + + + K+ Sbjct: 497 E-FKIFEQRTIGQNQNHLKMLVEPRNGGPLLDAIAFNIDTRYYPDLSI----KQARFAYK 551 Query: 571 LCVNYWRGSKRCQLRVLDASPV 592 L +N +RG++ QL V PV Sbjct: 552 LEINEFRGNRNVQLLVDYIEPV 573 >gi|289168420|ref|YP_003446689.1| single-stranded DNA-specific exonuclease [Streptococcus mitis B6] gi|288907987|emb|CBJ22827.1| single-stranded DNA-specific exonuclease [Streptococcus mitis B6] Length = 788 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 176/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W E I +K + VAR+L R + + K FL PS+ L DP + Sbjct: 54 YEWQFAPQVED-ADFTKIAKKAGLGSEVARLLFERGIQDQESLKKFLEPSLEDLH-DPYL 111 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 112 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 171 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A++ A + G+DVIV DHH + AYA Sbjct: 172 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPETLPDAYA 231 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 232 IVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 280 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 281 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 340 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 341 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 394 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 395 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 451 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D LN +++ Sbjct: 452 LFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAAGKNKLNLDEELNLETLSLET 511 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N PVF + +++S R + AHL++ S+ + + +AF Sbjct: 512 VKSFERLAPFGMDNQKPVFYIKDFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 570 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 ++ K + + L VN W G QL ++DA VEG F + Sbjct: 571 W----ATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 616 >gi|168215692|ref|ZP_02641317.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens NCTC 8239] gi|182382087|gb|EDT79566.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens NCTC 8239] Length = 592 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 174/603 (28%), Positives = 302/603 (50%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L +P ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NNPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G+DVI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEVPKAYAVINPKQDDCNYPFKSLCGAGISFKFICALYKELGI-----PQKEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL +L + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEILNNTKNKGLISLKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I + Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +S E ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|70728502|ref|YP_258251.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas fluorescens Pf-5] gi|68342801|gb|AAY90407.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas fluorescens Pf-5] Length = 569 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 177/562 (31%), Positives = 276/562 (49%), Gaps = 18/562 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + + L+ S+ L+P L D A +V A+ ++I+I Sbjct: 17 DLPPLLTRLYAARGV---QSVEELDKSLARLIPY-QQLKGIDAAVDLLVTALDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++ + QL+ITV Sbjct: 73 VGDFDADGATASTVGLLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 133 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCEFPSKALAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+SDD + Sbjct: 253 RARPGLKAILEVAKRDHSRITSTDLGFILGPRLNAAGRLDDMSLGIECLLSDDVSAARAM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD LNQ+R+ +E M +A A++ + + + WH G++G+LA+RLKE Sbjct: 313 AAQLDELNQDRKSIEQGMQREALAQLKELPVE-SMPFGLCLFDADWHQGVIGILASRLKE 371 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 ++ RP+ A + DG GS RS+ GF I + A ++ K GGHAMAAGL++ Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + + T DG L ++ L L AGP+G P P+ Sbjct: 432 QNFPAFAEAFDEEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPM 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F +L R+V HL++ S+ L IAF + E + + + Sbjct: 492 FHG-VFELVEQRIVGERHLKVVLRSECGSLKLDGIAFGIDR----EVWPNPTIRWVELAY 546 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L +N +RG + QL + P Sbjct: 547 KLDLNEFRGQETVQLMIAHIEP 568 >gi|168205873|ref|ZP_02631878.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens E str. JGS1987] gi|170662627|gb|EDT15310.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens E str. JGS1987] Length = 592 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 176/603 (29%), Positives = 303/603 (50%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L DP ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L+ C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLTRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G+DVI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D + + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I + Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +S E ++ K GGH MAAGL+VE N L + + + P +ID L Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPLLRNMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G+K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|148557626|ref|YP_001265208.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas wittichii RW1] gi|148502816|gb|ABQ71070.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas wittichii RW1] Length = 588 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 239/594 (40%), Positives = 340/594 (57%), Gaps = 14/594 (2%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 L V SI G W G A D++ ++L+ R + + P+ Sbjct: 4 PVLNVARSILGQPWHWRGGTVDGIDAGFEA-----DDLITQLLLARGCPREAVELHRLPT 58 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 IR MPDP I D D+AA R+ A+ + E + IFGDYDVDGA S AL++R L + A Sbjct: 59 IRGFMPDPSIFRDMDEAAARLADAVEHGEPVTIFGDYDVDGATSAALLIRLLRDLGLRAG 118 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 YIPDR+++GYGP+ + K G +LI+TVDCG+ +++AL+ A++ GIDVIV+DHH+ Sbjct: 119 FYIPDRLMEGYGPSGEALLKIGEGGTRLIVTVDCGAQAFEALKLASDAGIDVIVVDHHKC 178 Query: 185 KSEEIPAYALVNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLS 240 +E A+ALVNPNRLD + + GHL A GV FL+ + R+LR N L+ Sbjct: 179 AAELPRAFALVNPNRLDEGEGAAHGHLAAVGVAFLLGAALLRVLRARNFFATRAEPKLID 238 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LLD+VAL TV DV L GLNRA+V +G+ V + N GL ALIE + T +LG+ Sbjct: 239 LLDIVALGTVADVASLRGLNRAFVAQGIKVMAGRRNIGLAALIEASRLERAPTCTDLGFA 298 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INAGGR+G+S+LG RLL ++D E +A +LD LN+ RR +E A+ E+AE + Sbjct: 299 LGPRINAGGRVGKSDLGVRLLTTEDRDEARTIAAELDRLNEERRAIEKAVQEEAETLSGS 358 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Q SV VV WHPG++G++A RLKEK GRP+ I+ ++DG G GSGRSI G D Sbjct: 359 QG----NRSVAVVAAGGWHPGVIGIVAGRLKEKLGRPALVIALDKDGVGKGSGRSIGGVD 414 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 +G + A + G+LV GGGHAMAAG+TV L DF ++ + V +D Sbjct: 415 LGAAILAAKDMGLLVAGGGHAMAAGVTVAPGGVDALADFLEERLASDVARARDDRALLLD 474 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET 540 V+ V +L++ LE+ GPYGAG P P A ++ VV H++ +D + Sbjct: 475 AVVAPGGVTPSLVEALEAGGPYGAGWPAPRIAAGAVRVIKADVVGQGHVRTIVSGRDGRS 534 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ IAFR + LG+ L+ + R + + G V+ W +L V DA+ + Sbjct: 535 IKTIAFRAADSALGQALLGAGPDRTLWIAGRPKVDDWGSRPAAELHVEDAAWAD 588 >gi|171779661|ref|ZP_02920617.1| hypothetical protein STRINF_01498 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281763|gb|EDT47197.1| hypothetical protein STRINF_01498 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 734 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 167/592 (28%), Positives = 275/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S + W ++ + ++ I + +++L +R + + FL+ + L DP Sbjct: 4 SKYNWKNIEKEPDDGFFEVTKKE-NITALASKILFSRGIDNGEKLAQFLSNDLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+I+GDYD DG S ++M L +Y+P+R V Sbjct: 62 YLLHDMDKAVARIRQAIENYEQILIYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRFV 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN + + FI + LIITVD G ++A+ YA +QG+DVIV DHH + +E A Sbjct: 122 DGYGPNELVYKYFIEQQQVSLIITVDNGVAGHEAISYAQSQGVDVIVTDHHGLPAELPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+V+P + +L GV F + + + +LDLVA+ T+ Sbjct: 182 FAIVHPEHPEADYPFKYLAGCGVAFKIACALLESIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + ++ GL L++ +I + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A ++ N+ R+ + + ++A V V Sbjct: 291 LDDPNPAVELLTGFDDEEALSIAQMINAKNEERKEIVQKIYDEAMGMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E +P ++ EDG GS RS E +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRILEHIAQPVIVLN-IEDGMAKGSARSTEAINI--FHALDEH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N +L + L ID VL+ S +++ Sbjct: 402 RDLFEAFGGHAGAAGMTLPVDNLEQLSQVLCDYIAENDINLAQKKTLIIDEVLDLSEIDL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + L+ P+G N PVF + ++ R + HL++ +Q S + +AF Sbjct: 462 DTVKSLDKIAPFGMDNAKPVFEIKDFTVKQARTMGQNDAHLKLKI-AQGSTAVDLVAFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + + L +N W G QL + DA + Sbjct: 521 GHL----VQELQQAQNLCLAVTLSINKWNGQTTVQLMLEDARVDGVQLIDIR 568 >gi|167855461|ref|ZP_02478225.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis 29755] gi|167853390|gb|EDS24640.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis 29755] Length = 576 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 181/574 (31%), Positives = 278/574 (48%), Gaps = 21/574 (3%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 Q+ + ++ R+ +R V L+ S++ L P L + D+A ++ ++ ++ Sbjct: 14 QRLSENPLLNRIYQSRGVKSP---TELDLSLKGLHH-PKELANIDQAVDLLLDSLTRQDR 69 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 I+I GD+D DGA S AL + L + IPDR GYG + S+ E + +GA + Sbjct: 70 IVIVGDFDADGATSTALAILALRQFGFQQVDYLIPDRFSQGYGLSLSVAEMVMAKGADFV 129 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 +TVD G +S++ + QGI V+V DHH A A+VNPN L G Sbjct: 130 LTVDNGISSFEGIALLKAQGIRVLVTDHHLPADSLPNADAMVNPNLAACTFPSKSLAGVG 189 Query: 214 VVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V+F V++ + +R+ ++ LLDLVAL TV DVVPL NR V +GL R Sbjct: 190 VIFYVMMALRAKMRELGHFKEKEPNIAELLDLVALGTVADVVPLDHNNRILVNQGLNRIR 249 Query: 273 R-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 G++AL E + A +LG+ I P +NA GR+ +LG LLISD+ Sbjct: 250 SGHCRVGIQALAEVAKRDLYALQASDLGFAIAPRLNAAGRLENMSLGVELLISDNLALAR 309 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAA 388 A++LD LNQ R+ E M +A A QA IV+ WH G++G+LA+ Sbjct: 310 QFALELDSLNQTRKEFEQEMKAEALALCAKLPTLSQQNQAQGIVLYQPDWHQGVIGILAS 369 Query: 389 RLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAA 444 R+K++F RP A + E D GS RSI G + ++ A + ++VK GGHAMAA Sbjct: 370 RIKDQFHRPVIAFAQESDDSEYLKGSARSIAGLHMRDLLERIDAKYDNLIVKFGGHAMAA 429 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GLT+ + + + F + + + V DG L A N+A ++L+ AGP+G Sbjct: 430 GLTIHQDHLAQFQTVFDETVNEVAEPEWLQGVIYTDGELLADEFNLATAELLKQAGPWGQ 489 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 P P F ++ +++ HL+M E++ AI F V + + K+ Sbjct: 490 HFPEPTFEGR-FRILQQKLLAGKHLKMMVENEYGTLFDAIWFNVDVKCYPDLSI----KQ 544 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 L +N +RG K QL + +E F Sbjct: 545 ATFVYKLDINEFRGGKNLQLLIEYL--LEDDQFK 576 >gi|322372785|ref|ZP_08047321.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. C150] gi|321277827|gb|EFX54896.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. C150] Length = 736 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 280/592 (47%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + ++ + + A++ R ++ + A +DFL + L DP Sbjct: 4 STYDWKINTKEPD-AGFFKLAKERGLAETAAKIAYERGITTEDALEDFLKADLSHLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S +++ L A +Y+P+R Sbjct: 62 YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G +A+ YA QG+DVIV DHH + ++ A Sbjct: 122 DGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPAQLPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P D +L GV F + + + +LDLVA+ T+ Sbjct: 182 YAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+V L NR V GL + + GL+ L+ ++ I+ E +G+ + P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E + +A++++ N+ R+ + + ++A V V Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLESINI--FHALDNH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 I GGHA AAG+T+ N G+L D + ++ +D L S +++ Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIETSAKNTLNLDEELKLSELSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 I L P+G N PVF + + R + HL+ + Q + +AF Sbjct: 462 DTIKSLGKLAPFGMDNKKPVFCLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFNK 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L + Q++G + + L VN W G QL + DA F + Sbjct: 521 GD--LLQEFQQAQG--LELAVTLSVNVWNGQTTLQLMLEDARVEGIQLFDIR 568 >gi|225860609|ref|YP_002742118.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae Taiwan19F-14] gi|225728120|gb|ACO23971.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae Taiwan19F-14] gi|327390346|gb|EGE88687.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA04375] gi|332076445|gb|EGI86908.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA41301] Length = 740 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I + +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIGANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|148988977|ref|ZP_01820377.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP6-BS73] gi|147925474|gb|EDK76551.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP6-BS73] Length = 740 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIIKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSIPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|332799396|ref|YP_004460895.1| single-stranded-DNA-specific exonuclease RecJ [Tepidanaerobacter sp. Re1] gi|332697131|gb|AEE91588.1| single-stranded-DNA-specific exonuclease RecJ [Tepidanaerobacter sp. Re1] Length = 861 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 184/582 (31%), Positives = 296/582 (50%), Gaps = 29/582 (4%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 + W QE + ++ ++L R + + + ++ P + L DP+ Sbjct: 5 NYIWQVGSTQEVDDNYDE------FHHVILQLLKKRGIVTPEQIHGYIYPKLDNLY-DPM 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D DKA RI +A+ +K+ I+GDYD DG S A++M+ L + N YIP R+ + Sbjct: 58 LLKDMDKAVVRIKEALSKKQKVTIYGDYDADGITSCAVLMKLLKNLGGTVNYYIPSRLDE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AY 192 GYG N ++ +G +LIITVD G +S + +QYA++ G+DVI+ DHH+ + + A Sbjct: 118 GYGLNKDAIDMIHKQGTKLIITVDNGISSCEEVQYASSLGLDVIITDHHEPQQKMPQAAI 177 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P R D L GV + + + LL+L A+ TV D Sbjct: 178 AIVDPKREDCSYPFKELAGVGVALKLACALKGKDLKFG--------KELLELAAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VPL+ NR V GL N GLKA++ +N I + Y++ P +NA GRI Sbjct: 230 IVPLLDENRIIVKNGLDDLGNTKNLGLKAMMNLLNLNDISIEPGKISYLLAPRLNAAGRI 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LL+ +D++ LA L+ +NQ R+ +E+ +L++A+ V+ Q D+ ++I Sbjct: 290 ANPEIAVELLLCEDAKRAFELATTLERINQERQTLEAKILDEAKT-VIEQEIDLDIENII 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WHPG+ G +A++L E + RP IS + D +G GSGRSI GF++ + + Sbjct: 349 VISSANWHPGVTGTVASKLVEIYSRPCIIISEKGD-EGRGSGRSISGFNL--FNALSKLS 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L++ GGH AAGL+++ N G + +P ID LN S +N+ Sbjct: 406 HLLIRFGGHEQAAGLSIKVENIGTFRRELNQLFVQDTVQKDASPKLDIDLELNQSDINLK 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVY 549 L + LE P+G GNP PVF N +Q++R V HL++ +S ++ + AI F + Sbjct: 466 LAEQLELMKPFGYGNPKPVFMCRNLHIQNLRTVGSGDKHLKLNLKSHENN-IDAIGFN-F 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G + M + M +L VN W+GS QL + D Sbjct: 524 GLYKEDLDMATI---MDAAFYLEVNRWKGSIEPQLNIKDLRV 562 >gi|327484910|gb|AEA79317.1| Single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae LMA3894-4] Length = 545 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/538 (31%), Positives = 265/538 (49%), Gaps = 21/538 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + L D+A + AI ++I++ GD+D DGA S AL + L N + + Sbjct: 11 LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R DGYG +P ++++ I GA++I+TVD G +S + ++YA +G+ V+V DHH E Sbjct: 71 PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243 A+VNPN L GV F +++ + +RQ L+ L+D Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMAEPKLMELID 190 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG++ALIE + A + G+ + Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359 GP INA GR+ + + G LL+ ++ +A +LD LNQ R+ +E M A + L Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 DD + +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370 Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + + GI++K GGHAMAAGLT+E NF C F + + + Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFEHFCRLFDQLVREELDEAALKGII 430 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535 DG L ++ ++L + GP+G P P+F K+ ++V HL++ E Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489 Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + IAF V + + K + + L +N +RG++ QL + Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGNQSLQLMIDYLE 543 >gi|116517143|ref|YP_816033.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae D39] gi|116077719|gb|ABJ55439.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae D39] Length = 740 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|303260103|ref|ZP_07346076.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP-BS293] gi|303261287|ref|ZP_07347235.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP14-BS292] gi|303263952|ref|ZP_07349873.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae BS397] gi|303265943|ref|ZP_07351839.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae BS457] gi|303268325|ref|ZP_07354122.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae BS458] gi|302637421|gb|EFL67908.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP14-BS292] gi|302638798|gb|EFL69260.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP-BS293] gi|302642163|gb|EFL72513.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae BS458] gi|302644527|gb|EFL74778.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae BS457] gi|302646357|gb|EFL76583.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae BS397] gi|332077041|gb|EGI87503.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA17545] Length = 740 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|301793801|emb|CBW36193.1| putative phosphoesterase [Streptococcus pneumoniae INV104] gi|332204634|gb|EGJ18699.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA47901] Length = 740 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|238897399|ref|YP_002923076.1| ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465154|gb|ACQ66928.1| ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 578 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 176/562 (31%), Positives = 279/562 (49%), Gaps = 20/562 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 P ++ ++ +R ++ D L + L D L + A + + +A +++MI G Sbjct: 22 PQLIRQLYASRGITKDQQ---LARGTKSLC-DWQALAGIEDAIQILKEAFSLQKRMMIVG 77 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+DVDGA S AL M L N + IP+R +GYG P ++E+ GA LIITVD Sbjct: 78 DFDVDGATSTALAMMALEAMGAQNVHFLIPNRFEEGYGLTPKIVEQVSLRGADLIITVDN 137 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + A ++G+ V++ DHH A A++NPN+L+ L GV F + Sbjct: 138 GISSHEGVDLAHHKGMQVLITDHHLPTERLPNADAIINPNQLNCPFPSKSLAGVGVTFYL 197 Query: 219 LVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 ++ + LR++ +L LDLVAL TV DVVPL NR V +GL R Sbjct: 198 MLGLRAHLRKEGWFHKKNIQEPNLAEFLDLVALGTVADVVPLDTNNRILVHQGLNRIRAG 257 Query: 275 G-NPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG+ AL+E +TA +LG+ + P +NA GR+ + G LL++ D E L Sbjct: 258 KSRPGIVALLEVASRSEHRLTAADLGFALAPRLNAAGRLDNMSTGVSLLLTQDLSEAREL 317 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 A LD LN+ RR +E +M ++A +C D + + +WH G+VG+LA+R+K Sbjct: 318 ARDLDALNKVRREIEQSMKKEALDLCHQIECHDQPLPKGLALYHPKWHQGVVGILASRIK 377 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 ++F RP A + + G+ GSGRS+ + ++ G+++K GGHAMAAGL +E Sbjct: 378 DRFYRPVIAFAPTDGGQLKGSGRSVTSVHMRDLLEQIDRAYPGLILKFGGHAMAAGLLIE 437 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F F + + L DG L+ +++ +L AGP+G G P P Sbjct: 438 QNKFDLFRQCFAERVTASLKDLELENSIWSDGELSPDKISLETAQLLRDAGPWGQGFPEP 497 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 VF ++ R++ HL++ E + L AIAF V L K++ + Sbjct: 498 VFDGK-FRILKQRLLCGCHLKLQVEPIEGGIPLDAIAFNVDSKSWPYPLF----KKVTLA 552 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L +N +R + QL + Sbjct: 553 YKLDINVFRQQPQLQLMIQGIW 574 >gi|225856310|ref|YP_002737821.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae P1031] gi|307126810|ref|YP_003878841.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae 670-6B] gi|225725908|gb|ACO21760.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae P1031] gi|306483872|gb|ADM90741.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae 670-6B] Length = 744 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|15902581|ref|NP_358131.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae R6] gi|15458112|gb|AAK99341.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae R6] Length = 744 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|281491112|ref|YP_003353092.1| single-stranded-DNA-specific exonuclease RecJ [Lactococcus lactis subsp. lactis KF147] gi|281374862|gb|ADA64381.1| Single-stranded-DNA-specific exonuclease RecJ [Lactococcus lactis subsp. lactis KF147] Length = 742 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 168/579 (29%), Positives = 269/579 (46%), Gaps = 34/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 + W L I +KH + ++ +RVL R V + + FL PS+ L DP + Sbjct: 6 YDWKVADT-AISEDFLKIAKKHKLDELTSRVLYQRGVHAEAEIEQFLKPSLENLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI+ AI E I+I+GDYD DG + ++M L A +Y+P+R DG Sbjct: 64 LHDMEKATGRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + + +I LIITVD G +A+ +A G+DVIV DHH + + PAYA Sbjct: 124 YGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPPAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F V + +LDLVA+ T+ D+ Sbjct: 184 IVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAP-----------SEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L++ + IT E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D E +A +D N R+ + + +A + + + V + Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDE-------PVQI 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A RL E +P ++ +E+G GS RSIE FDI + Sbjct: 346 LYHKDWHKGVLGIVAGRLLEAIHKPVIMLA-QEEGILRGSARSIENFDI--FKALNAHRE 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAG+T+ N + + + + +I + ++++ Sbjct: 403 LFIAFGGHKQAAGMTLSLENVEVVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLST 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 I L P+G NP P F ++K+ R + HL++ + ++ + + A+ F+ Sbjct: 463 ITNLAKLAPFGMDNPKPRFLIEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L Q++ + L N W G+ QL + DA Sbjct: 522 EELEFEQAQTK-----LVATLSSNSWDGNTSLQLMIEDA 555 >gi|319897320|ref|YP_004135516.1| single-stranded-DNA-specific exonuclease recj [Haemophilus influenzae F3031] gi|317432825|emb|CBY81190.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae F3031] Length = 532 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/536 (31%), Positives = 269/536 (50%), Gaps = 16/536 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 M +P L D+A +V+A +KI+I GD+D DGA S AL + L + + + Sbjct: 1 MLNPNQLYGIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVDYLV 60 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R GYG + + E I +G QL++TVD G +S+D + + +GI V+V DHH Sbjct: 61 PNRFEQGYGLSIPVAEMAIEKGVQLLMTVDNGVSSFDGVVFLKEKGIRVLVTDHHLPPET 120 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245 PA +VNPN L GV F +++ + R+ + LLDLV Sbjct: 121 LPPADVIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 180 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNPGLKALIERVNIS-SPITAENLGYMIGP 303 AL TV DVVPL NR +GLM R R+ PG+ AL E N + T+ +LG+ IGP Sbjct: 181 ALGTVADVVPLDQNNRILAYQGLMRIRARRCRPGIIALAEVANRNVEQFTSSDLGFCIGP 240 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+ ++G LL++++ + LA+ LD LNQ R+ +ES M +A Sbjct: 241 RLNAAGRLDNMSIGVELLLANEMPKARELALDLDELNQTRKEIESGMKLEAIKICQNLTA 300 Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ I + WH G++G++++R+K+++ RP A + + +G GS RSIEG + Sbjct: 301 LFKELPYGITLYQPDWHQGVLGIVSSRVKDQYHRPVIAFTQDSEGILKGSARSIEGLHMR 360 Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 ++ I++K GGHAMAAGL++ F F + + + + D Sbjct: 361 DVLERIHSQHPNIILKFGGHAMAAGLSIREEYFADFQHLFNQTIADWLDEEHLQGIIWTD 420 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537 G LN++ N+ ++++S G +G G P P F K+ R + HL+M E Q Sbjct: 421 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQG 479 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L AIAF + + + K+ + L +N +RG++ QL V P++ Sbjct: 480 GVLLDAIAFNIDTRLYPDLSI----KQARLVYKLDINEFRGNRSLQLLVDYIEPID 531 >gi|168482843|ref|ZP_02707795.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CDC1873-00] gi|172043762|gb|EDT51808.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CDC1873-00] gi|332203770|gb|EGJ17837.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA47368] Length = 740 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQILEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|329116391|ref|ZP_08245108.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parauberis NCFD 2020] gi|326906796|gb|EGE53710.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus parauberis NCFD 2020] Length = 735 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 164/591 (27%), Positives = 272/591 (46%), Gaps = 33/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W+ + + +K ++ + R+L +R + + FL + L DP + Sbjct: 6 YDWIINEKKPDDG-FFKLAKKKSLSQDICRLLYDRGIDDEKKLDHFLRADLSDL-NDPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI AI N E+I+++GDYD DG S ++M L A +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRTAIENFEQILVYGDYDADGMTSASIMKETLEMMGAEALIYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA G+DVIV DHH + + AYA Sbjct: 124 YGPNESVYKYFIEQNQVSLIITVDNGVAGHEAIAYAQAAGVDVIVTDHHSLPDQLPQAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + L GV F + + + LDLVA+ T+ D+ Sbjct: 184 VIHPEHPEADYPFKKLAGCGVAFKLACALLETVP-----------TEFLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L+ + E+ +G+ I P +NA GR+ Sbjct: 233 VSLTDENRVLVKNGLKVLKMSERQGLQELMTISGVDLDAIDEDTVGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ ++ N+ R+ + + +A V V V Sbjct: 293 DPNPAIELLTGFDDEEAHDIALMINEKNEERKSLVQTIYNEAVEMVDL------SKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WHPG++G++A R+ E+ + ++ E+G GS RSIE +I + + Sbjct: 347 LAKAGWHPGVLGIVAGRILEEISQTVIVLN-IENGVAKGSARSIEAINI--FDALNHQRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ GGH+ AAG+T+ N L + + + + KID L+ +++ Sbjct: 404 LMTAFGGHSGAAGMTLPAENIQALSESITDYVVSEKIDISQKNSLKIDSWLDLDHLSLEF 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + L P+G N PVFA + + R + +HL++ ++ ET +AF Sbjct: 464 LKELNILAPFGMDNKKPVFALKDFTVVQARTMGADQSHLKLRIKNGSVET-DVVAFNQGQ 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 L + + + L VN W G+ QL ++DA + F + Sbjct: 523 YHLEYSQLAD----LELAVTLTVNSWNGNTSLQLMLVDARATKSPQLFDFR 569 >gi|262168396|ref|ZP_06036093.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC27] gi|262023288|gb|EEY41992.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio cholerae RC27] Length = 545 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/538 (31%), Positives = 264/538 (49%), Gaps = 21/538 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + L D+A + AI ++I++ GD+D DGA S AL + L N + + Sbjct: 11 LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 70 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R DGYG +P ++++ I GA++I+TVD G +S + ++YA +G+ V+V DHH E Sbjct: 71 PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 130 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLD 243 A+VNPN L GV F +++ + +RQ L+ L+D Sbjct: 131 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELID 190 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG++ALIE + A + G+ + Sbjct: 191 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 250 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM--LEQAEAKVL 359 GP INA GR+ + + G LL+ ++ +A +LD LNQ R+ +E M A + L Sbjct: 251 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 310 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 DD + +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G Sbjct: 311 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 370 Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + + GI++K GGHAMAAGLT+E NF C F + + + Sbjct: 371 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFEHFCRLFDQLVREELDEAALQGII 430 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535 DG L ++ ++L + GP+G P P+F K+ ++V HL++ E Sbjct: 431 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 489 Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + IAF V + K + + L +N +RG++ QL + Sbjct: 490 KGFPTNVMIDGIAFNVDLRRWPDV----SVKTVRLAYKLDINEFRGNQSLQLMIDYLE 543 >gi|156932656|ref|YP_001436572.1| ssDNA exonuclease RecJ [Cronobacter sakazakii ATCC BAA-894] gi|156530910|gb|ABU75736.1| hypothetical protein ESA_00439 [Cronobacter sakazakii ATCC BAA-894] Length = 543 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 175/543 (32%), Positives = 270/543 (49%), Gaps = 17/543 (3%) Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L S++ ++P L DKA + A+ +I++ GD+D DGA S AL + L Sbjct: 7 LERSVKGMLP-WQQLCGIDKAVAMLHYALREGLRIIVVGDFDADGATSTALSVLALRALG 65 Query: 121 V-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 N +P+R DGYG +P ++++ GAQ+I+TVD G +S+ + A GI V+V Sbjct: 66 GSNVAYLVPNRFDDGYGLSPEVVDQAHARGAQMILTVDNGISSHAGVARAHELGIPVLVT 125 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LN 235 DHH A A++NPN + L GV F +++ + LR Sbjct: 126 DHHLPGDTLPAAGAIINPNLAECTFPSKSLAGVGVAFYLMLALRAHLRTVGWFTEKGIPE 185 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPIT 293 +L LDLV+L TV DVVPL NR + +GL R + PG++AL+E N +T Sbjct: 186 PNLAEFLDLVSLGTVADVVPLDANNRILIWQGLSRIRAGKCRPGIRALLEIANREAHRLT 245 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 A +LG+ +GP +NA GR+ + ++G LL+ D+ E MLA +LD LNQ R+ +E M + Sbjct: 246 ASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARMLANELDALNQTRKEIEQGMQAE 305 Query: 354 AEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGS 412 A + S I + WH G+VG+LA+R+KE+F RP A + +G GS Sbjct: 306 ALTLCQQLERSGETLPSGIAIFHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGILKGS 365 Query: 413 GRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 GRS++G + + G+++K GGHAMAAGL++E F F + ++ + Sbjct: 366 GRSVQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEARFPEFQARFAQLVNDWLDP 425 Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQ 530 + DG L + + + +ML AGP+G P P+F ++ R+V HL+ Sbjct: 426 AMLQGEIWSDGALAPQEMTLEVAEMLRDAGPWGQMFPEPLFDGR-FRILQQRLVGERHLK 484 Query: 531 MTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + E L IAF V T + + + + L VN +RG+ QL + Sbjct: 485 LMLEPVGGGPLLDGIAFNVDTTCWPD----PGVREVELAYKLDVNEFRGNCSLQLIIDHL 540 Query: 590 SPV 592 PV Sbjct: 541 WPV 543 >gi|148992282|ref|ZP_01822005.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP9-BS68] gi|147928908|gb|EDK79920.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP9-BS68] gi|332074417|gb|EGI84893.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA17570] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|183603118|ref|ZP_02712494.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP195] gi|237649854|ref|ZP_04524106.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CCRI 1974] gi|183573135|gb|EDT93663.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP195] Length = 744 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|148983991|ref|ZP_01817310.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP3-BS71] gi|147924138|gb|EDK75250.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP3-BS71] gi|301799657|emb|CBW32217.1| putative phosphoesterase [Streptococcus pneumoniae OXC141] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|88608252|ref|YP_506588.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia sennetsu str. Miyayama] gi|88600421|gb|ABD45889.1| single-stranded-DNA-specific exonuclease RecJ [Neorickettsia sennetsu str. Miyayama] Length = 577 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 206/585 (35%), Positives = 311/585 (53%), Gaps = 21/585 (3%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 SI G W+ L + QK + VA VL NR + D FL+P ++ +P Sbjct: 6 KSIKGSVWIHNYVPP--KELLFLRQKFGLSLTVASVLYNRVGADDDIATFLDPKLKHTLP 63 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP L + RI++AI EKI+I+GDYDVDGA S AL+ + ++YIPDR Sbjct: 64 DPFSLLGMKEGIERILRAISEDEKIVIYGDYDVDGATSSALLKNYFREIGKKVDIYIPDR 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 I +GYGPN + EG L ITVDCG ++ ++ A G+D+IV+DHH P Sbjct: 124 ITEGYGPNKVAFTQLKKEGYTLCITVDCGILAHAEIEAANTIGLDIIVVDHHISTDVIPP 183 Query: 191 AYALVNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVA 246 A A++NPNR+D ++ HL A GV FL+L+ + +LR +L++ LDLVA Sbjct: 184 ATAVINPNRIDQPNVINTEHLAAVGVSFLLLIGLNVVLRAKGFFDNKKEPNLINYLDLVA 243 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 L TVCDVV L G+NRA+V +GL V ++ N GL L + + + S + A +LGY+IGP IN Sbjct: 244 LGTVCDVVRLTGINRAFVKQGLKVIDQRKNLGLSILTKELKLFSTLEAYHLGYVIGPHIN 303 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGRI +S+LGSRLL + + E E +A L VLN R+ +E A L++ +V + Sbjct: 304 AGGRISQSSLGSRLLSTQNPAEAEEIATTLCVLNLKRKEIERAALQEVITQV-----EKT 358 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 VI+ WH GI+G++A+R+K+++ P+ +S + S RSI +IG V Sbjct: 359 SKKVILAASANWHQGIIGIVASRIKDRYHLPTIILS-IDGNIAKASARSIRDANIGMAVI 417 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 A E G++++GGGH MAAG + E + DFF+++ ++ ID L Sbjct: 418 AAKESGLIIEGGGHKMAAGFSCETRKIPAIRDFFEEYFKDVNTQE----TIHIDSELYID 473 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFES-QDSETLQAI 544 + L D L+ P+GAGNP P F + ++ + +++ H+ T + ++ I Sbjct: 474 TITSDLCDDLKILAPHGAGNPEPKFVLKDVRVVTSKIIGEDGHIACTLRDVRTHTVIRGI 533 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AFR L E ++ + + S + Q+ + DA Sbjct: 534 AFRA-DPILKEAILNCEVTNF--LVKIKADSLGYSNKPQVIIEDA 575 >gi|298229719|ref|ZP_06963400.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255471|ref|ZP_06979057.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502403|ref|YP_003724343.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae TCH8431/19A] gi|298237998|gb|ADI69129.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae TCH8431/19A] Length = 744 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|237821283|ref|ZP_04597128.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CCRI 1974M2] Length = 744 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ + Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLEM 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|221231434|ref|YP_002510586.1| phosphoesterase [Streptococcus pneumoniae ATCC 700669] gi|220673894|emb|CAR68400.1| putative phosphoesterase [Streptococcus pneumoniae ATCC 700669] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|148998284|ref|ZP_01825753.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP11-BS70] gi|168576490|ref|ZP_02722364.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae MLV-016] gi|147755927|gb|EDK62971.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP11-BS70] gi|183577772|gb|EDT98300.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae MLV-016] gi|332202488|gb|EGJ16557.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae GA41317] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIAFMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|307067227|ref|YP_003876193.1| single-stranded DNA-specific exonuclease [Streptococcus pneumoniae AP200] gi|306408764|gb|ADM84191.1| Single-stranded DNA-specific exonuclease [Streptococcus pneumoniae AP200] Length = 744 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIAFMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|225858446|ref|YP_002739956.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae 70585] gi|225721186|gb|ACO17040.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae 70585] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I + +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIGANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|239628278|ref|ZP_04671309.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518424|gb|EEQ58290.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 590 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 167/601 (27%), Positives = 273/601 (45%), Gaps = 49/601 (8%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAA 82 I + + I + AR++ NR + + +L+ S++ L DP +L D +KA Sbjct: 3 HAKKADFNKIAETYGISPVTARIIRNRGIEGMEDIGHYLHGSVKDLH-DPRLLPDMEKAV 61 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 + + + I I GDYD+DG S L+ R L N + IPDRI DGYG N ++ Sbjct: 62 GILRGKVQEGKPIRIVGDYDIDGVCSTYLLYRALKRIGANVDFEIPDRIKDGYGINEMII 121 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-------------------- 182 E +G I+T D G + + A G+ V+V DHH Sbjct: 122 EAAAEDGIDTILTCDNGIAAVSQIARAKELGMTVVVTDHHDILVEESGNSGAGDDAGGQD 181 Query: 183 ----------QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 Q PA A+VNP +C V + ++ +++ Sbjct: 182 GNDADAEDSCQGTEVLPPADAIVNPKMRGCRYPFPGICGGMVAYKLVQVLFEECGV---- 237 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 + L +L++ A+ATV DV+ L G NR V +GL N GL+ LIE+ N S Sbjct: 238 -PAEEWLDMLEIAAIATVGDVMKLQGENRIIVKEGLCRLGHTSNLGLRKLIEKNNLASDS 296 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 ITA ++G++IGP +NA GR+ + L LL+ +D E + +A +L LN R+ M A + Sbjct: 297 ITAYHIGFVIGPCLNASGRLQTAKLALGLLLCEDEMEADRMAQELKELNDQRKDMTQAGI 356 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 + A A V Q V+VV H + G++A RL+E++G+PSF ++ E G G Sbjct: 357 DDAAAMVDEL---YQDDKVLVVFLPDCHESLAGIVAGRLRERYGKPSFVLTRAE-GCAKG 412 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 SGRSIE + + + + +L+K GGH MAAG ++ + + A + Sbjct: 413 SGRSIEAYHM--FHALVEVKDLLLKFGGHPMAAGFSLREEDVDEFRRRLNENARERLTED 470 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--L 529 P ID + ++ + + LE PYG GN P FA N ++S V+ + Sbjct: 471 DFIPRVWIDVAMPFEYISESFVKELELLEPYGQGNEKPQFAQKNMVIRSASVMGRNRNVV 530 Query: 530 QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +++ ++ ++ + F + E + + M + + VN + G++ Q+ V D Sbjct: 531 RLSLVNERGVSMNGVVFTEGDLFMEE---KGNSRVMDIIYYPGVNEYNGNRNLQIVVKDW 587 Query: 590 S 590 Sbjct: 588 K 588 >gi|169343769|ref|ZP_02864768.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens C str. JGS1495] gi|169298329|gb|EDS80419.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium perfringens C str. JGS1495] Length = 592 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 176/603 (29%), Positives = 301/603 (49%), Gaps = 44/603 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + + ++ I + + +LVNRN+ + A++FL I L DP ++ Sbjct: 4 QWLLKQRKRD--EIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENL-NDPYLM 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K +R+ +AI +KI I+GDYD DG +S +++ + L C+ N N +IPDR +GY Sbjct: 61 KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++ EG ++I+T D G +++ + A N G+DVI+ DHH + Sbjct: 121 GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E AYA++NP + D LC AG+ F + +Y+ L + L LL++ Sbjct: 181 KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGI-----PQKEALELLEIC 235 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV L+G NR V GL + N GL AL + + + +LG++IGP Sbjct: 236 AIATVCDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPC 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LL+++D ++ + LA +L LNQ R+ + ++ ++ + ++ Sbjct: 296 INATGRLETADLSVELLLAEDDEKADALAKELFELNQRRQELTKDSVDMVIKQI--EDNN 353 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VI+V H I G++A R+KEK+ P+ ++ + GS RSIE ++I + Sbjct: 354 MENDKVILVYNPYIHESIAGIVAGRIKEKYNVPTIIMT-KGKDMPKGSARSIEEYNIFEE 412 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +S E ++ K GGH MAAGL+VE N L + + P +ID L Sbjct: 413 LSKCKE--LISKFGGHPMAAGLSVEEKNIPILRSMLLENCK--LTDYDIIPKVRIDVKLP 468 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDS-ETL 541 ++N L+D L+ P+G GN +P+F + K+ + ++ ++ + ++S +T+ Sbjct: 469 LESLNYGLVDSLDKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTI 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 AIAF E G+ + + + +N + G K Q V Sbjct: 529 DAIAFGNKVEEFKEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGDKSIQANVK 588 Query: 588 DAS 590 Sbjct: 589 YFR 591 >gi|301801480|emb|CBW34172.1| putative phosphoesterase [Streptococcus pneumoniae INV200] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|182683542|ref|YP_001835289.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CGSP14] gi|182628876|gb|ACB89824.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CGSP14] Length = 744 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|168490503|ref|ZP_02714646.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CDC0288-04] gi|194398716|ref|YP_002037270.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae G54] gi|183575023|gb|EDT95551.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CDC0288-04] gi|194358383|gb|ACF56831.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae G54] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|118090027|ref|NP_345123.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae TIGR4] gi|85720558|gb|AAK74763.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae TIGR4] Length = 740 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|111657547|ref|ZP_01408287.1| hypothetical protein SpneT_02001248 [Streptococcus pneumoniae TIGR4] Length = 744 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEASFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 572 >gi|71908451|ref|YP_286038.1| RecJ exonuclease [Dechloromonas aromatica RCB] gi|71848072|gb|AAZ47568.1| exonuclease RecJ [Dechloromonas aromatica RCB] Length = 566 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 178/566 (31%), Positives = 269/566 (47%), Gaps = 27/566 (4%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 ++ + ++AR+ R + K L+ ++ L+P P LT AA+ + AI K Sbjct: 18 EQQGLHPLLARLYAARGIKD---KSELDYELKSLIP-PTALTHATDAAQLLADAIEAEAK 73 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 ++I GDYD DGA + A+ MR L + + +PDR GYG +P +++ + LII Sbjct: 74 MLIIGDYDCDGATATAVGMRALKSLGADVDFLLPDRFKLGYGLSPEIVDVAAEQSPDLII 133 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G S + + A GI ++ DHH + A +VNPN+ + GV Sbjct: 134 TVDNGIASLEGVARAQQHGIATLITDHHLPAATLPAADCIVNPNQPGCDFPSKCIAGVGV 193 Query: 215 VFLVLVLIYRILRQDNKVPLN------FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 +F V++ + LR+ N + +LLDLVAL TV DVV L NR V +GL Sbjct: 194 MFYVMLALRAELRERGWFTPNGGDRPEPNFANLLDLVALGTVADVVKLDRNNRILVSQGL 253 Query: 269 MVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R A TA +LG+++GP +NA GR+ + LG L++DD Sbjct: 254 KRMRAGQMQPGIAALFKAAARDPKRATAFDLGFLLGPRLNAAGRLADMRLGVECLLTDDP 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +A +LD LN+ RR +E+ M EQA + + A I + WH G+VG+L Sbjct: 314 SRALQIAQELDSLNRERREIEAGMQEQALILLESLDVA-NAAPGIALFDAGWHEGVVGIL 372 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A+R+K+K RP FA + E G GSGRSI G + + G+LV+ GGHAMAA Sbjct: 373 ASRIKDKLHRPVFAFARGEGGIVKGSGRSIPGLHLRDALDLVAKRAPGLLVRFGGHAMAA 432 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 G T++ +F R F + A ++ T + DG L +++ MLE+ +G Sbjct: 433 GATLKEEDFERFSQLFAEVAAELLAPADLTRTLETDGNLEGGYISLETARMLEN-EIWGQ 491 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 G P P+F + ++ RV+ HL++ D + AI F P G R Sbjct: 492 GFPAPLFM-DDFDVEQQRVLKEKHLKLRLRKGD-TRIDAIQFNFSNQP---------GSR 540 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590 V L +N + G + QL V Sbjct: 541 TRVAYRLAINEYMGVESPQLMVEHLE 566 >gi|298372091|ref|ZP_06982081.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroidetes oral taxon 274 str. F0058] gi|298274995|gb|EFI16546.1| single-stranded-DNA-specific exonuclease RecJ [Bacteroidetes oral taxon 274 str. F0058] Length = 582 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 165/591 (27%), Positives = 271/591 (45%), Gaps = 24/591 (4%) Query: 11 CSISGFRWVSLLG-QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S+ W E + ++ I ++++LV RNV + D AK F PS+ L Sbjct: 2 KSV----WNIRQIGNEEHSAINHLSAVLGISAELSKLLVIRNVKTFDEAKAFFRPSLDNL 57 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DP ++ D A R+ +A+ EKI+++GDYDVDG +V+L+ FL + N YIP Sbjct: 58 H-DPFLMRDMSTAVERVNKALREQEKILVYGDYDVDGTTAVSLVYGFLKQYTKNIRYYIP 116 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 DR +GYG + +E + G L+I +DCG S D + A GID I+ DHH + Sbjct: 117 DRYTEGYGISFKGIEFAKDNGFSLVIALDCGIKSNDKIDLANRYGIDFIICDHHTPGVDL 176 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A A+++P+R D HL GV F ++ + D LDL A++ Sbjct: 177 PKAVAVLDPHRADCEYPYEHLSGCGVGFKLVQALCMSNMLDIDEAFR-----YLDLAAVS 231 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINA 307 D+VP+ G NR GL + GLK++ + + ++ + IGP INA Sbjct: 232 IASDIVPITGENRVLASFGLKKLNFNPSAGLKSIKDVCGLNKKTVDISDIVFKIGPRINA 291 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ +LL S + + L+ +D N R+ ++ + E+A+ + + D ++ Sbjct: 292 SGRLHSGAEAVQLLTSTNDEVLQQKCADIDGYNSERKDIDKSTTEEAKRQ-FAEQPDYKE 350 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 IV+ W+ GIVG++A+R+ E+F RP+ ++ +DG GSGRS+ GFD+ + Sbjct: 351 KKSIVLYNPSWNKGIVGIVASRIAEEFCRPTIILTDSDDGLVAGSGRSVVGFDLYSAIDS 410 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 E +LV GGH AAGLT+ R F F + P ID ++ ++ Sbjct: 411 CAE--LLVNFGGHPYAAGLTLRREQLTDFAIRFDNFVCRNILPEQLIPQIDIDTEIDFTS 468 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKL--QSIRVVNLA--HLQMTFESQDSETLQA 543 + I +L+ P+G N PVF R++ H ++ Sbjct: 469 ITPKFIRILKQFAPFGPHNMKPVFCTHGLSDFHNQSRLIGKDNTHAKLVLTQNGHTFFDG 528 Query: 544 IAF---RVYGTPLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AF + + + + K ++ + + N + GS QL + D Sbjct: 529 VAFCSGYMRNYNMANIIDHIKNKGQIDICYTIEDNNFNGSITNQLMIRDIR 579 >gi|262166459|ref|ZP_06034196.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus VM223] gi|262026175|gb|EEY44843.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio mimicus VM223] Length = 548 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 169/538 (31%), Positives = 264/538 (49%), Gaps = 21/538 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-VNANMYI 127 + L ++A + AI ++I++ GD+D DGA S AL + L N + + Sbjct: 14 LHSFKQLHGIERAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLV 73 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R DGYG +P ++++ + GA++I+TVD G +S + ++YA +G+ V+V DHH E Sbjct: 74 PNRFEDGYGLSPEVVDQALERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQE 133 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A+VNPN L GV F +++ + +RQ L+ L+D Sbjct: 134 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFVAQGIAEPKLMELID 193 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG++ALIE + A + G+ + Sbjct: 194 LVALGTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFAL 253 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES--AMLEQAEAKVL 359 GP INA GR+ + + G LL+ ++ +A +LD LNQ R+ +E A + L Sbjct: 254 GPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERL 313 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 DD + +V+ WH G++G+LA+R+KEK+ RP A + DGK GS RS+ G Sbjct: 314 QLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGL 373 Query: 420 DIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + + GI++K GGHAMAAGLT+E NF R C F + + Sbjct: 374 HMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDNLVREELDEAALKGII 433 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-- 535 DG L ++ ++L + GP+G P P+F K+ ++V HL++ E Sbjct: 434 LSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE-FKVLHQKLVGEKHLKLMLEPLY 492 Query: 536 ---QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + IAF V + + K + + L +N +RGS+ QL + Sbjct: 493 KGFPTNVMIDGIAFNVDLRRWPD----ASVKTVRLAYKLDINEFRGSQSLQLMIDHIE 546 >gi|119946908|ref|YP_944588.1| single-stranded-DNA-specific exonuclease RecJ [Psychromonas ingrahamii 37] gi|119865512|gb|ABM04989.1| exonuclease RecJ [Psychromonas ingrahamii 37] Length = 572 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 180/557 (32%), Positives = 291/557 (52%), Gaps = 18/557 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++ ++ +NR +S L+ S + L+ L A + QA+ +S+KI++ Sbjct: 21 CSPLLTQLYINRGISSA---SELDNSTQSLLHA-QQLKGITTACELLYQALLSSQKIIVV 76 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + IP+R GYG +P +++ I++GAQL++TVD Sbjct: 77 GDFDADGATSTALSILALRGLGFTNIDYLIPNRFDYGYGLSPEIVDLAISKGAQLLMTVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S ++A + G+ +++ DHH +E A A+VNPN++ +L GV F Sbjct: 137 NGISSISGAKHAKDNGLKLLITDHHLPGAETPQADAIVNPNQVGCSFPSKNLAGVGVAFY 196 Query: 218 VLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ- 274 V++ + ++ +L +LLD+VAL TV DVV L NR V +GL R Sbjct: 197 VMLALRAFMQNKGYFTHFKAPNLATLLDIVALGTVADVVVLDANNRTLVHQGLARIRAGV 256 Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 G+ ALI + + A +LG+ +GP +NA GR+ E + G LL+ ++ ++ ++A Sbjct: 257 CRVGISALISVAKRNQGQLVASDLGFSLGPRLNAAGRLDEMSFGVELLLCENVEQANIIA 316 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKE 392 +LD LNQ+RR +E M E+A + D I + WH G++GL+A+R+KE Sbjct: 317 NELDALNQSRREIEQGMQEEALKTLANLSLDENNIPHAICLFEQEWHQGVIGLVASRIKE 376 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVER 450 K+ RP+FA + +G+ S RSI G I M+ + G+++K GGHAMAAGL+V+ Sbjct: 377 KYYRPTFAFAKANNGEIKASARSIPGVHIRDMLDLVDKKIPGVILKFGGHAMAAGLSVKE 436 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F + V + + DG LN+ ++ L AGP+G G P P+ Sbjct: 437 TDFELFSKTINRVLQEQVDNDLLNNIILCDGQLNSQQFSLEQAQELRDAGPWGQGFPAPL 496 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F KL R+V HL+MT E + +T++AIAF + EF K ++ Sbjct: 497 FDGE-FKLLQQRLVGSHHLKMTLEFE-GKTIEAIAFNID----VEFWPNPMVKTVYCVYR 550 Query: 571 LCVNYWRGSKRCQLRVL 587 L +N +RG++ Q+ V Sbjct: 551 LDINEFRGNRTVQMLVE 567 >gi|169833143|ref|YP_001694090.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae Hungary19A-6] gi|168995645|gb|ACA36257.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae Hungary19A-6] Length = 740 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SRGEASFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 568 >gi|156743853|ref|YP_001433982.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus castenholzii DSM 13941] gi|156235181|gb|ABU59964.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus castenholzii DSM 13941] Length = 572 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 282/583 (48%), Gaps = 24/583 (4%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 S RW+ E +A ++ P ++A VL R + + A S L D Sbjct: 7 SARNKRWLI---HETPREFIAAWRQF--PPLIAAVLYQRGLRDESAIGEFFASDYRLH-D 60 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L + A +RIV AI N E + ++GDYD DG +V L+++ + Y+P RI Sbjct: 61 PFSLRGMEAAVQRIVAAIQNHEPMAVYGDYDTDGVTAVTLLVQVIRAMGGMIQPYVPHRI 120 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N + ++ + EG +L+ITVDCG ++ ++A G+D+I+ DHH + A Sbjct: 121 REGYGLNIAAIDALVREGVRLLITVDCGISNLREAEHARAAGLDLIITDHHAPPARLPYA 180 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VNP + HL G+ + + + R + LLD+VA+ TV Sbjct: 181 LAIVNPKQPGCPYPFKHLVGVGIAYQLARALVRR-----GLRSTLQKDDLLDVVAIGTVT 235 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+ PLIG NR V GL PG++ALIE ++ +T+ ++ + +GP +NA GR Sbjct: 236 DMGPLIGENRVLVTHGLKAINAAQRPGVRALIEAAGLTPGKVTSTDISFGLGPRLNASGR 295 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I + L LL++++ + LA +L+ N+ R+ + ++ EQA A++ Q+ + Sbjct: 296 IDNARLSYELLLAEELAMAQRLARELNAQNRQRQELSKSVQEQASAQIRALGKHQQR--I 353 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 IV++ + G+VGL+AA L E++GRP+ I E GS RS+ GF I + ++ Sbjct: 354 IVLDDAGYPSGVVGLVAAHLVEEYGRPTVLIERGEM-WSRGSARSVPGFSIIEALTAC-- 410 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + + GGHA AAG T+ L D ++A +P + P +ID + ++ Sbjct: 411 ADLFERFGGHAEAAGFTIATDRLPELEDRLVRYADQRLPDDLLIPSLRIDAGVPLGELSY 470 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFR 547 L++ L+ P+G GNP PV ++ HL++ AIAFR Sbjct: 471 DLLNELKKLEPFGQGNPQPVLMSSRVQVIGAWTRGSEGQHLKLRLTDAGGRGPFNAIAFR 530 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L + Q + + V L V+ W GS QL V D Sbjct: 531 LG--HLARYFEQ--PRWIDVVYTLEVDEWNGSDALQLNVKDFR 569 >gi|322412009|gb|EFY02917.1| single-stranded-DNA-specific exonuclease [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 735 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIEDKKPDDG-FFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI QAI + E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMEKAVLRIRQAIEDGEQILIYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A+ YA QGIDVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAISYAQVQGIDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLTMLKHTERVGLQELMSLSPIDLDQFTEDAVGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDNPNPAIELLTGFDDQEAQAIALMIKEKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLA-IDNGFAKGSARSLEAINI--FEALSGN 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L D +F ID L+ +++ Sbjct: 402 RDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIEHGLDQTAKNTLTIDERLSLEDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + L+ PYG +P P+F + K+ R + HL+ SQ + +AF Sbjct: 462 DTLKSLDKLAPYGMDHPKPIFYVKDIKVSQARTMGQDQSHLKFKV-SQGKTSFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L +F + + + L VN+W G+ QL ++DA Sbjct: 521 -GSQLQDFQQATG---LELAVTLSVNHWNGNTSLQLMLVDARV 559 >gi|313200455|ref|YP_004039113.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp. MP688] gi|312439771|gb|ADQ83877.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp. MP688] Length = 569 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 269/564 (47%), Gaps = 24/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++A++L R V L S+ L+P P LT+ + A + AI +++ Sbjct: 22 GLSPLLAQLLAARGVKTP---VQLEASLAGLIP-PDRLTNNTRMAALLADAIVAKRSLLV 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GDYD DGA + A+M+R L + +P+R GYG P ++E IITVD Sbjct: 78 VGDYDADGATATAVMVRGLRMLGAVVDFLVPNRFEYGYGLTPEIVELAAQSKPDFIITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S D + A G+ V+V DHH A +VNPN+ HL GV F Sbjct: 138 NGIASVDGVARANALGMSVLVTDHHLPGDHVPAAACIVNPNQHGCDFPSKHLAGVGVAFY 197 Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 V++ + +R +L SLLDLVAL TV D+V L NR V +GL R Q Sbjct: 198 VMLALRAEMRARGLFEGKAEPNLTSLLDLVALGTVADLVKLDDNNRILVEQGLRRIRAGQ 257 Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 +PG+ L+ A++LG+ +GP +NA GR+ + LG L+++D Q +A Sbjct: 258 CSPGILWLMRLAGREPASSCAQDLGFSVGPRLNAAGRLDDMTLGISCLLAEDDQSAHAMA 317 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L LN RR +E+ M E A A++ D + + + WH G++G+LA+R+KE+ Sbjct: 318 QQLHALNHERRSIEADMQESALAEL--DGLDAEGRYSLSLYQPDWHQGVIGILASRIKER 375 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 + RP A + DG GSGRSI G + + E +++K GGHAMAAGL++ + Sbjct: 376 YHRPVIAFAQAGDGVLKGSGRSIPGLHLRDALDLLSKREPDLILKFGGHAMAAGLSIREI 435 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 + R F+ ++ + ++DG L ++ + L+ +G G P P+F Sbjct: 436 DMERFRLGFESVVAGLLTPADLESIIEVDGALTLEDMHWDVAVALQR-QVWGQGFPPPMF 494 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 + ++ + R+V HL++T ++ + AI FR + + + L Sbjct: 495 C-DDFEVVAQRIVGGKHLKLTLSTR-GRAVDAIFFRQ---------EEFLPQYVTAVYEL 543 Query: 572 CVNYWRGSKRCQLRVLDASPVEGH 595 N + G++ QL + PV Sbjct: 544 QTNAFNGARNVQLLIKHWQPVAAQ 567 >gi|319776544|ref|YP_004139032.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae F3047] gi|317451135|emb|CBY87368.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae F3047] Length = 532 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 169/536 (31%), Positives = 270/536 (50%), Gaps = 16/536 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 M +P L D+A +V+A +KI+I GD+D DGA S AL + L + + + Sbjct: 1 MLNPNQLYGIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVDYLV 60 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R GYG + + E I +G QL++TVD G +S++ + + +GI V+V DHH Sbjct: 61 PNRFEQGYGLSIPVAEMAIEKGVQLLMTVDNGVSSFEGIAFLKEKGIRVLVTDHHLPPET 120 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245 PA A+VNPN L GV F +++ + R+ + LLDLV Sbjct: 121 LPPADAIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 180 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGP 303 AL TV DVVPL NR +GLM R + PG+ AL E N + T+ +LG+ IGP Sbjct: 181 ALGTVADVVPLDQNNRILAYQGLMRIRARHCRPGIIALAEVANRNVEQFTSSDLGFCIGP 240 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+ ++G LL++++ + LA+ LD LNQ R+ +E+ M +A Sbjct: 241 RLNAAGRLDNMSIGVELLLANEMSKARELALDLDELNQTRKEIEAGMKLEAIKICQNLTA 300 Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ I + WH G++G++++R+K+++ RP A + + +G GS RSIEG + Sbjct: 301 LFKELPYGITLYQPDWHQGVLGIVSSRVKDQYHRPVIAFTQDSEGILKGSARSIEGLHMR 360 Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 ++ I++K GGHAMAAGL++ F F + + + + D Sbjct: 361 DVLERIHSQHPNIILKFGGHAMAAGLSIREEYFADFQHLFNQTIADWLDEEHLQGIIWTD 420 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537 G LN++ N+ ++++S G +G G P P F K+ R + HL+M E QD Sbjct: 421 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQD 479 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L AIAF + + + K+ + L +N +RG++ QL V P++ Sbjct: 480 GGLLDAIAFNIDTRLYPDLSI----KQARLAYKLEINEFRGNRSLQLLVDYIEPID 531 >gi|319425291|gb|ADV53365.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella putrefaciens 200] Length = 574 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 273/564 (48%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ ++ R V + L +R P + +AA I A+ ++ I+I Sbjct: 19 HLPPLLKQLYARRGVMPHECELALQGLLR-----PETMKGLIEAAAIIADAMQANKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ ++ A+L+ITV Sbjct: 74 VGDFDADGATSTSVCMLALRMMGALKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ VI+ DHH E A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKAFGMQVIITDHHLPGHELPAADAIVNPNQPGCPFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LR N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMTALRAELRTRNWYQSRGIAEPNLGTLLDIVALGTVADVVSLDANNRILVEAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 AGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E M ++A + + ++ + I + + WH G++G+LA+R Sbjct: 314 RMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEAELPWGIALFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+K+ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL+ Sbjct: 374 IKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNTRHPGLIIKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ +F + + + T DG L + +N+ + +L +AGP+G Sbjct: 434 LKAGSFATFAKAYDDAVREQLKPELLTGELWSDGELTPTELNLEIAQLLRNAGPWGQAFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E+Q L AIAF V + + Sbjct: 494 EPLFDGY-FKIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWPDATINHA----R 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RG+ QL V Sbjct: 549 IVYKLDVNEYRGNFSLQLMVEQIE 572 >gi|90020860|ref|YP_526687.1| exonuclease RecJ [Saccharophagus degradans 2-40] gi|89950460|gb|ABD80475.1| exonuclease RecJ [Saccharophagus degradans 2-40] Length = 581 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 174/562 (30%), Positives = 275/562 (48%), Gaps = 21/562 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 D++ ++ R S D + ++ ++P P + + A I A+ E+I+I GD Sbjct: 26 DLIKQLYAARGYSSDKPTQY---ALSEMLP-PTNMRGIAEGANIIEAALRTGERIVILGD 81 Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL +R L + +P+R GYG P ++ LIITVD G Sbjct: 82 FDADGATSTALAVRCLRAMGAQHVDYLVPNRFEFGYGLTPEIVAVAAKLNPNLIITVDNG 141 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 S + + A GI V+V DHH + A A+VNPN+ G +L GV+F +L Sbjct: 142 IASVEGVNAANALGIKVLVTDHHLPPEQLPDAAAIVNPNQKGCEFGSKNLAGVGVIFYLL 201 Query: 220 VLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 + LR ++ S LDLVAL TV DVVPL NR V +G+ R+ Sbjct: 202 CALRSQLRASGWFEQRGIEPPNMASYLDLVALGTVADVVPLDFNNRILVSQGIARMRQGV 261 Query: 276 NPGLKA-LIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 L + + + + +LG+++GP +NA GR+ + +LG ++L++D+ E LA Sbjct: 262 CIAGIRALFQVGGRNIERVQSTDLGFVVGPRLNAAGRLDDMSLGIKMLLTDNYTEALHLA 321 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKE 392 +LD LN+ RR +E++M +A + D +Q + + + WH G++G+LA+R+K+ Sbjct: 322 GELDSLNRERRQIEASMQHEAFKLLDELALDGEQTPMGVSLYQADWHQGVIGILASRIKD 381 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 K RP+ A + D + GSGRS+EG + ++ G+L K GGHAMAAGL++ + Sbjct: 382 KLHRPTIAFADATDTEIKGSGRSVEGVHLRDILDQVATENPGLLSKFGGHAMAAGLSLPK 441 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F + F + + T DG L A +++A + + AGP+G P P+ Sbjct: 442 ESFTAFAEAFDRCVSAHLGGEALTAKVITDGELPAHLMDLATAEAIAHAGPWGQNFPEPL 501 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQ--DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F L R+V HL+M + AIAF V + +R+ + Sbjct: 502 FYGE-FLLVQQRIVGEKHLKMVVTPSEYSGLAIDAIAFNVDVASWP----NNSVERVRLA 556 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L VN +RG+K QLRV Sbjct: 557 YVLDVNEFRGNKSLQLRVAHLE 578 >gi|148656139|ref|YP_001276344.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus sp. RS-1] gi|148568249|gb|ABQ90394.1| single-stranded-DNA-specific exonuclease RecJ [Roseiflexus sp. RS-1] Length = 572 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 174/584 (29%), Positives = 280/584 (47%), Gaps = 26/584 (4%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMP 70 S RW L A A+P ++A +L R V D A ++F + R + Sbjct: 7 SARNKRWHILETPPEFIAACR-----ALPPLIAALLYQRGVRSDAAMREFFSADYR--LN 59 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP + + A +RI AI++ E + ++GDYD DG +V L+++ +S Y+P R Sbjct: 60 DPFSMRGMETAVQRIAAAIHDHELMAVYGDYDTDGVTAVTLLVQAISAMGGLILPYVPHR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 I +GYG N ++ EG +L+ITVDCG ++ +A GID+I+ DHH + Sbjct: 120 IREGYGLNIEAIDALAREGVRLLITVDCGISNVREAAHARAVGIDLIITDHHHPPARLPD 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP + HL G+ F ++ + R LLD+VAL TV Sbjct: 180 AVAIINPRQPGCSYPFKHLVGVGIAFQLVRALARR-----GFRSTLQKDDLLDVVALGTV 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309 D+ PLIG NR V GL PG++ALI+ ++ +T+ ++ + +GP +NA G Sbjct: 235 TDMGPLIGENRVLVTHGLKALNAAQRPGVRALIQAAGMTPGRVTSTDISFGLGPRLNASG 294 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 RI + L LL++++ + + LA +L++ N+ R+ + + EQA A++ Q Q Sbjct: 295 RIDNARLSYELLLAEEFETAQRLAHELNLQNRQRQELSKTVHEQASAQI--QALGKQNQR 352 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +I+++G + G+VGL+AARL E++GRP+ I E GS RS+ GF I ++ Sbjct: 353 LIILDGTDYPAGVVGLVAARLVEEYGRPTVLIERGEQ-WSRGSARSVPGFSIIDALTDC- 410 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + + GGH AAG T+ L D ++A + + P ID + ++++ Sbjct: 411 -ADLFERFGGHTEAAGFTIATDRLPALEDRLLRYAAEHLSDDLLMPGITIDAEVPPASLS 469 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAF 546 L+ L P+G GNP PV ++ HL++ D AIAF Sbjct: 470 YELLGELAKLEPFGHGNPQPVLMSRRLQVTGAWPRGSEGQHLKLRLVGADGSGPFDAIAF 529 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R L + Q + + + L + W GS QL V D Sbjct: 530 RFG--HLARYFEQ--PRWIDIVYTLEADEWNGSPSLQLNVKDFR 569 >gi|309792234|ref|ZP_07686706.1| single-stranded-DNA-specific exonuclease RecJ [Oscillochloris trichoides DG6] gi|308225775|gb|EFO79531.1| single-stranded-DNA-specific exonuclease RecJ [Oscillochloris trichoides DG6] Length = 571 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 168/583 (28%), Positives = 269/583 (46%), Gaps = 22/583 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMP 70 S W L ++ ++A +L R + + FL R + Sbjct: 4 SARHKHWDVLPAAPAD-----FIRRIGYSPLLATLLYQRQLREPELVQQFLRADYRSGLH 58 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P++L A+ RI QAI E I ++GD+D DG +V L+++ L YIP R Sbjct: 59 NPMLLKGMPAASERIAQAIQAGEPIAVYGDFDTDGVTAVTLLVQALGAMGAKIQPYIPHR 118 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +GYG N ++ G +L+ITVDCG +++D + A G+DVIV DHH SE P Sbjct: 119 TREGYGLNLHAVQHLAANGVRLLITVDCGISNHDEVAEAMRLGMDVIVTDHHTPPSELPP 178 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 AYA+VNP + HL GV F ++ + + + LLD+VAL TV Sbjct: 179 AYAIVNPKQPGCTYPYPHLVGVGVAFKLVQALVKRGLSLGDLRG----RDLLDVVALGTV 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309 D+ PL G NR V GL PGL+AL+E +S + + +GYM+ P INA G Sbjct: 235 ADMGPLDGENRVLVKAGLEALNATQRPGLRALVEVSGLSMGKVDSAAIGYMLAPRINAAG 294 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ LL++ + ++LA +L+ N+ R+ + + A+A + Q Sbjct: 295 RLDDAVRAYELLLATSYSQAKVLANELNQTNRARQDLTKQVQAAAKALAEAEGRHQQL-- 352 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+V+ + G+VGL+A +L E++GRP I E GS RSI GF I + Sbjct: 353 VVVLHSPEFDAGVVGLVAGKLAEEWGRPVLLIEQGEAS-SRGSARSIPGFSIIAALQACH 411 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + + GGH+ AAG T+ + L Q A + + P ++D + + ++ Sbjct: 412 --DLFERYGGHSAAAGFTIPNEHIPTLDARLQALAAAQLSDTMLQPRIQVDAEVGLNELS 469 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 L+ L P+G NP P+ + ++ +R HL + +AIAFR Sbjct: 470 WELLADLAQLEPFGQANPQPILMSRSVQVVEVRSRGADGQHLSLIMRKDGGPRYEAIAFR 529 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L + L + R+ + L N W G ++ Q+ + D Sbjct: 530 LG--HLADALRRHP--RIDLIYTLEANEWNGERKLQINIKDFR 568 >gi|251782685|ref|YP_002996988.1| single-stranded-DNA-specific exonuclease [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391315|dbj|BAH81774.1| single-stranded-DNA-specific exonuclease [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 735 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 276/583 (47%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIEDKKPDDG-FFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI QAI + E+I+++GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMEKAVLRIRQAIEDGEQILVYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++AL YA QGIDVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEALSYAQTQGIDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ +I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLTMLKHTERVGLQELMSLSSIDLDQFTEDAVGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKEKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLA-IDNGFAKGSARSLEAINI--FEALSGN 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L D +F ID L+ +++ Sbjct: 402 RDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLEDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + L+ PYG +P P+F + K+ R + HL+ SQ + +AF Sbjct: 462 DTLKSLDKLAPYGMDHPKPIFYVKDIKVSQARTMGQDQSHLKFKV-SQGKTSFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L +F + + + L VN+W G+ QL ++DA Sbjct: 521 -GSQLQDFQQATG---LELAVTLSVNHWNGNTSLQLMLVDARV 559 >gi|229829303|ref|ZP_04455372.1| hypothetical protein GCWU000342_01390 [Shuttleworthia satelles DSM 14600] gi|229792466|gb|EEP28580.1| hypothetical protein GCWU000342_01390 [Shuttleworthia satelles DSM 14600] Length = 590 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 176/601 (29%), Positives = 295/601 (49%), Gaps = 42/601 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + A+ + + I + ARV+VNR V+ + +L+PS+ + +P L Sbjct: 3 KWLLTNKKADF---KALARANGIDQVTARVMVNRGVAEEDFDAYLHPSLDQIR-NPHDLK 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D+AA + +AI +KI I GDYD+DG S ++ + L C + + +P RI DGYG Sbjct: 59 DVDRAADLLSEAIDAGKKIRIIGDYDIDGIQSTYILHQALLTCQADVDYVLPKRIEDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------SE 187 N L+E G LIIT D G + +A+ A + G+ VIV DHH+V Sbjct: 119 LNSHLVEDAHESGVSLIITCDNGIAAKEAIARAKDLGMMVIVTDHHEVPFAMADGKRLDR 178 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 PA A+VNP + D +C A V + ++ ++Y + + L+ A Sbjct: 179 LPPADAIVNPKQADCPYPFKEICGAVVAWKLVFVLYEKRGVSVTLA-----MDFLENAAF 233 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306 ATV DV+PL+ NR V GL R+ NPG+ AL+ I ++A ++G+++GP +N Sbjct: 234 ATVGDVMPLVDENRTIVSLGLERLRKTSNPGMAALMRVREIDPDHLSAYHIGFILGPCLN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + +RLL + ++ +LA L LN+ R+ M + LE A ++ + D Sbjct: 294 AAGRLETAEKSTRLLEEKEPEKAWVLAEDLAALNETRKAMTARGLEDAFTQI--KEGDYA 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMV 425 + V+V+ + H I GL+A ++KE RP F ++ +G GSGRSI + + + + Sbjct: 352 KDPVLVIYLPKLHESIAGLVAGKVKESLWRPCFILTDASAEGLVKGSGRSIPPYSMFEEM 411 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + ++V+ GGH MAAGL++ R L A+ + P ID + Sbjct: 412 NRC--KDLMVQFGGHPMAAGLSLRRDKIDSLRRALN--ANCTLTEDDLLPKIHIDVPMPL 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 + I+L++ L+ P+G GNP P+FA N ++S+R + L+ + + S ++ Sbjct: 468 HYITISLVEELKRLEPFGNGNPKPLFAVRNVLVRSLRTMGREGQFLKFSLR-EGSSEVEG 526 Query: 544 IAF---RVYGTPLGEFLMQSRGKRM----------HVTGHLCVNYWRGSKRCQLRVLDAS 590 + F R + T + E Q + + +N +RG K QL + + Sbjct: 527 VYFGDARAFATAVEEAYGQGSWEEFCHGFRRDLAVRMVYEPQINSYRGRKSLQLVIREIE 586 Query: 591 P 591 P Sbjct: 587 P 587 >gi|153940003|ref|YP_001392042.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum F str. Langeland] gi|152935899|gb|ABS41397.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum F str. Langeland] gi|295320055|gb|ADG00433.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum F str. 230613] Length = 593 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 294/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFRMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSIE +++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIEEYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIDAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|332289943|ref|YP_004420795.1| ssDNA exonuclease RecJ [Gallibacterium anatis UMN179] gi|330432839|gb|AEC17898.1| ssDNA exonuclease RecJ [Gallibacterium anatis UMN179] Length = 576 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 293/565 (51%), Gaps = 18/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++ R+ +R ++ + LN +++ ++P P +LT ++A +++A + ++I+I Sbjct: 21 NADPLLDRIYRSRGIASE---AELNYALKYMLP-PSLLTHLEQATALLIEAYHQQKRIVI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S+A+ + L + +PDR GYG + S+ + +++ AQL+ITV Sbjct: 77 VGDFDADGATSIAVAVFALRQLGFQSVDFLVPDRFEQGYGLSVSVAQDALDKQAQLVITV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + Y + VIV DHH + A +VNPN +L GV F Sbjct: 137 DNGVSSLEGVDYLKQHQVQVIVTDHHLPGEKLPNADVIVNPNLAHCGFPSKYLAGVGVTF 196 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 ++V + RQ + LLD VAL TV DVVPL NR V +GL R Q Sbjct: 197 YLMVALRAAFRQQGLFADKKEPNFAELLDFVALGTVADVVPLDHNNRILVSQGLARIRAQ 256 Query: 275 -GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + G++ALIE N+ + I + +LG+ I P +NA GRI ++G LL+S+ ++ L Sbjct: 257 HCHCGIRALIEVANLDITQIVSSHLGFSIAPRLNAAGRIDNMSIGVELLLSETMEQARAL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 A++LD LN+ R+ +E+ M ++A + + + I + WH G++G+LAAR+K Sbjct: 317 ALELDTLNKTRKEIETGMKQEALHYLRELKPVYQENTFAIALYRPDWHQGVLGILAARMK 376 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVE 449 ++F RP+ + E++G GS RSIEG I ++ + ++K GGHAMAAGL++ Sbjct: 377 DQFHRPTAIFTQEDEGILRGSARSIEGLHIRDLLDHIHSQHPEIIIKFGGHAMAAGLSIH 436 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F F ++A + + V DG L + +N++ +ML+ AGP+G P P Sbjct: 437 QQYFPEFQRLFNQYAKSWLDEKSLQGVIYTDGELGSQQMNVSTAEMLQFAGPWGQHFPEP 496 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ R+V HL+M E Q AI F V + + K + Sbjct: 497 QFDGE-FRILQQRLVGEKHLKMLLEPIQGGGLFDAIQFNVDTRRFPDLSI----KTARMV 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 HL +N +RG+++ QL V +E Sbjct: 552 YHLSINEYRGNRQVQLLVNYIEALE 576 >gi|153004194|ref|YP_001378519.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp. Fw109-5] gi|152027767|gb|ABS25535.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp. Fw109-5] Length = 599 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 196/587 (33%), Positives = 289/587 (49%), Gaps = 27/587 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW+ LA + + ARVL R + A+ FL + L PDP Sbjct: 26 RRWIETAVDAAAAARLAEALRL--HPVAARVLAGRGLADPADAEAFLASRLSEL-PDPFT 82 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A R+VQA+ E+I +GDYDVDG S AL+ FL + Y P R+V+G Sbjct: 83 MKGMDAAVSRLVQAVEAGERIACYGDYDVDGVTSTALLCGFLRAAGADVVTYTPHRLVEG 142 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + K +GA+L++T+DCG TS + ++ A G+D +V+DHH V E A A+ Sbjct: 143 YGLNTEAVRKLAAQGARLLVTLDCGITSVEEVRAAAALGLDTVVVDHHTVPVELPAARAI 202 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVC 251 +NP++ L A GV F + + + R LR+ + +L LDLVAL T+ Sbjct: 203 LNPHQPGCAYPSKGLAAVGVTFALAMALRRTLRERGRFGGGRAEPNLKDALDLVALGTIA 262 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGG 309 DVVPL+G NR V GL + PGL AL I+ +TA +G+ + P INA G Sbjct: 263 DVVPLVGANRILVRWGLEAIAKSRRPGLCALKRVAGIAEGGEVTAGQVGFRLAPRINAAG 322 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ G RLL+SDD LA +LD N R+ +E +L++A + + Sbjct: 323 RLDDAGRGVRLLLSDDEATARALAEELDRENAARQEIERRILDEATEDARARVGAGVRGL 382 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V + D WH G+VG++A+R+ E+F RP+ ++ E+G G GSGRSIE F + ++ Sbjct: 383 V--LARDGWHAGVVGIVASRIVERFHRPAVLVA-LEEGSGKGSGRSIEAFHLYDALAAC- 438 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 G L + GGH AAG+TVER + F+ A + P +IDG L V Sbjct: 439 -SGHLARFGGHRHAAGVTVERGSLAAFRAAFEAHAAAQLAEEDLVPRCRIDGWLEERDVT 497 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFR 547 + + L GP+GAG+P PVFA R V AHL++ + AI F Sbjct: 498 ERIAEDLAKLGPFGAGHPEPVFALRGAA-TRARTVGAGNAHLKLAL----GRGIDAIGFG 552 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + + + + L + W G++R QL++ D P Sbjct: 553 MGDR------LAACAGPVEAAFTLGFDAWDGARRLQLKLRDVRPAAA 593 >gi|313895662|ref|ZP_07829218.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral taxon 137 str. F0430] gi|312975788|gb|EFR41247.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas sp. oral taxon 137 str. F0430] Length = 662 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 171/584 (29%), Positives = 279/584 (47%), Gaps = 28/584 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ +E A A + + +VA++L +R + + D A FL+P DP + Sbjct: 3 KEWII---EEPAAEADAFARTAGVAPLVAQILWHRGIRTPDAADAFLHPE-EAPFHDPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + AA RI+ AI I+++GDYDVDG S L+ + + + + YIP+R +G Sbjct: 59 MADMEIAAARILDAIERHVPIVVYGDYDVDGMTSTTLLTKNIRALGGDVSYYIPNRFTEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + EG L++TVDCG S +A+ +D+IV DHH +E PA A+ Sbjct: 119 YGINLPALRQIHEEGCALLVTVDCGIASVEAVAEMRGV-LDIIVTDHHLPGTELPPALAV 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP+R D + L GV F + +++ Q LD+ AL TV D+V Sbjct: 178 LNPHRADCPYPEKELAGVGVAFKLCQALWQRRAQRLY-------EDDLDIAALGTVADLV 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR V +GL V G++ALI I A ++G+ + P +NA GR+ Sbjct: 231 PITGENRKIVRQGLRVMSENPCVGIRALISVAGLEDKKINAGHVGFQLAPRLNAAGRLET 290 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G LL S+D+ + +A +L+ LN RR +E +L +A+ + D+ IVV Sbjct: 291 ARHGVALLSSEDAVDAARIAGELNGLNTERRGLEQEILTEAQRSLADFTPDV---PAIVV 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+ G++G++A+RL E + RPS ++ +E GS RSI G + +S E Sbjct: 348 ASEDWNAGVIGIVASRLVETYYRPSIVLTRQE-NVYKGSCRSIAGLHMYDALSACRE--T 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHAMAAGL+V F + + P +I+ ++ + I L+ Sbjct: 405 LIQFGGHAMAAGLSVLPERLEDFRAAFSAYVREHLHPSDFIPKTRIEALVPPTDWTIPLV 464 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + L PYG GNP PVF + + S + HL++ + + + + + Sbjct: 465 EELALLEPYGMGNPRPVFGCRDMRPTSADAIGAEGKHLRLALGTPEHR-VAGLYWNH--- 520 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 GE + + + +N W+G+ Q V P Sbjct: 521 --GELAAVLAEESVDIAYVPSINEWQGTYSVQCMVDSILPAACE 562 >gi|253998380|ref|YP_003050443.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp. SIP3-4] gi|253985059|gb|ACT49916.1| single-stranded-DNA-specific exonuclease RecJ [Methylovorus sp. SIP3-4] Length = 568 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 268/564 (47%), Gaps = 24/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++A++L R V L S+ L+P P LT+ + A + AI +++ Sbjct: 21 GLSPLLAQLLAARGVKT---LVQLEASLAGLIP-PDRLTNNTRMAALLADAIVAKRSLLV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GDYD DGA + A+M+R L + +P+R GYG P ++E IITVD Sbjct: 77 VGDYDADGATATAVMVRGLRMLGAVVDFLVPNRFEYGYGLTPEIVELAAQSKPDFIITVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S D + A G+ V+V DHH A +VNPN+ HL GV F Sbjct: 137 NGIASVDGVARANALGMSVLVTDHHLPGDHVPAAACIVNPNQHGCDFPSKHLAGVGVAFY 196 Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 V++ + +R +L SLLDLVAL TV D+V L NR V +GL R Q Sbjct: 197 VMLALRAEMRARGLFEGKAEPNLTSLLDLVALGTVADLVKLDDNNRILVEQGLRRIRAGQ 256 Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 +PG+ L+ A++LG+ +GP +NA GR+ + LG L+++D Q +A Sbjct: 257 CSPGILWLMRLAGREPASSCAQDLGFSVGPRLNAAGRLDDMTLGISCLLAEDDQSAHAMA 316 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L LN RR +E+ M E A A++ D + + + WH G++G+LA+R+KE+ Sbjct: 317 QQLHALNHERRSIEADMQESALAEL--DGLDAEGRYSLSLYQPDWHQGVIGILASRIKER 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 + RP A + DG GSGRSI G + + E +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQAGDGVLKGSGRSIPGLHLRDALDLLSKREPDLILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 + R F+ ++ + ++DG L ++ + L+ +G G P P+F Sbjct: 435 DMERFRLGFESVVTGLLTPADLESIIEVDGALTLDDMHWDVAVALQR-QVWGQGFPPPMF 493 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 + ++ + R+V HL++T ++ + AI FR + + + L Sbjct: 494 C-DDFEVVAQRIVGGKHLKLTLSTR-GRAVDAIFFRQ---------EEFLPQYVTAVYEL 542 Query: 572 CVNYWRGSKRCQLRVLDASPVEGH 595 N + G++ QL + PV Sbjct: 543 QTNAFNGARNVQLLIKHWQPVAAQ 566 >gi|315147384|gb|EFT91400.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX4244] Length = 770 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANRQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|294781599|ref|ZP_06746935.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis PC1.1] gi|307289228|ref|ZP_07569184.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0109] gi|294451295|gb|EFG19761.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis PC1.1] gi|306499937|gb|EFM69298.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0109] gi|315037102|gb|EFT49034.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0027] gi|315164137|gb|EFU08154.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1302] gi|329571917|gb|EGG53595.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1467] Length = 770 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G + ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVSGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQGTS---DVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|329296876|ref|ZP_08254212.1| ssDNA exonuclease RecJ [Plautia stali symbiont] Length = 575 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 182/552 (32%), Positives = 270/552 (48%), Gaps = 18/552 (3%) Query: 49 NRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108 R V L + L+P L ++A + Q + +I++ GD+D DGA S Sbjct: 31 QRGVKDA---AELERGAKFLLP-WQSLGGIERAVTLLHQMLQQQRRIVVVGDFDADGATS 86 Query: 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168 AL + L N + +P+R DGYG +P ++E+ GA+LI+TVD G +S+ + Sbjct: 87 TALTVLALRSMGGNVDYLVPNRFEDGYGLSPEVVEQARARGAELILTVDNGISSHAGVDT 146 Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228 A GI V++ DHH A A+VNPN D L GV F +++ + LRQ Sbjct: 147 AHQHGILVLITDHHLPGETLPAAEAIVNPNLSDSAFPSRSLAGVGVAFYLMLALRAHLRQ 206 Query: 229 DNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIE 284 N +L LLDLVAL TV DVVPL NR V +GL R + G++AL++ Sbjct: 207 QNWFSDGRSEPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRAGIRALLD 266 Query: 285 RVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 N + A +LG+ +GP +NA GR+ + ++G LL+++D + MLA +LD LNQ R Sbjct: 267 IANRDARQLAASDLGFAVGPRLNAAGRLDDMSVGVALLLTEDIAQARMLASELDALNQTR 326 Query: 344 RLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 + +E M +A A + + WH G+VG+LA+RLKE+F RP A + Sbjct: 327 KEIEQGMKSEALALCDELERQHRDLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAFA 386 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460 DG GSGRSI G + + G+++K GGHAMAAGL++E + F Sbjct: 387 PAGDGTLKGSGRSIAGLHLRDALERIDTLYPGLIIKFGGHAMAAGLSLEEAKYDEFRQRF 446 Query: 461 QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS 520 + V DG L+A + +ML AGP+G P PVF KL Sbjct: 447 AALIDEWLEGEAMQGVMWSDGELHAQEFTLHTAEMLREAGPWGQAFPEPVFDGQ-FKLLQ 505 Query: 521 IRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 R+V HL++ E L IAF V + + S +++ + L +N +RG+ Sbjct: 506 QRLVGERHLKVMVEPLGGGPLLDGIAFNVDTSLWRD----SSVRQVQLAYKLDINGYRGN 561 Query: 580 KRCQLRVLDASP 591 + QL + P Sbjct: 562 RSVQLIIDHIWP 573 >gi|320528879|ref|ZP_08029971.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas artemidis F0399] gi|320138509|gb|EFW30399.1| single-stranded-DNA-specific exonuclease RecJ [Selenomonas artemidis F0399] Length = 662 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 171/584 (29%), Positives = 280/584 (47%), Gaps = 28/584 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ +E A A + + +VA++L +R + + D A FL+P DP + Sbjct: 3 KEWII---EEPAAEADAFARTAGVAPLVAQILWHRGIRTPDAADAFLHPE-EAPFHDPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + AA RI+ AI I+++GDYDVDG S L+ + + + + YIP+R +G Sbjct: 59 MADMEIAAARILDAIERHVPIVVYGDYDVDGMTSTTLLTKNIRALGGDVSYYIPNRFTEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + EG L++TVDCG S +A+ +D+IV DHH +E PA A+ Sbjct: 119 YGINLPALRQIHEEGCALLVTVDCGIASVEAVAEMRGV-LDIIVTDHHLPGTELPPALAV 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP+R D L + L GV F + +++ Q LD+ AL TV D+V Sbjct: 178 LNPHRADCLYPEKELAGVGVAFKLCQALWQRRAQRLY-------EDDLDIAALGTVADLV 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR V +GL V G++ALI I A ++G+ + P +NA GR+ Sbjct: 231 PITGENRKIVRQGLRVMSENPCVGIRALISVSGLEDKKINAGHVGFQLAPRLNAAGRLET 290 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G LL S+D+ + +A +L+ LN RR +E +L +A+ + D+ IVV Sbjct: 291 ARHGVALLSSEDAVDAARIAGELNGLNTERRGLEQEILTEAQRSLADFTPDV---PAIVV 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W+ G++G++A+RL E + RPS ++ +E GS RSI G + +S E Sbjct: 348 ASEDWNAGVIGIVASRLVESYYRPSIVLTRQE-NVYKGSCRSIAGLHMYDALSACRE--T 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHAMAAGL+V F + + P +I+ ++ + I L+ Sbjct: 405 LIQFGGHAMAAGLSVLPERLEDFRAAFSAYVREHLHPSDFVPKTRIEALVPPTDWTIPLV 464 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + L PYG GNP PVF + + S + HL++ + + + + + Sbjct: 465 EELALLEPYGMGNPRPVFGCRDMRPASADAIGAEGKHLRLALGTPEHR-VSGLYWNH--- 520 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 G+ + + + +N W+G+ Q V P Sbjct: 521 --GDLAAVLAEESVDIAYVPSINEWQGTYSVQCMVDSILPAACE 562 >gi|170755730|ref|YP_001782370.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum B1 str. Okra] gi|169120942|gb|ACA44778.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum B1 str. Okra] Length = 593 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 181/605 (29%), Positives = 296/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVKDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF G + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVGEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|307269501|ref|ZP_07550840.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX4248] gi|306514121|gb|EFM82697.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX4248] Length = 770 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G + ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVSGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENVPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQGTS---DVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|332522136|ref|ZP_08398388.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus porcinus str. Jelinkova 176] gi|332313400|gb|EGJ26385.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus porcinus str. Jelinkova 176] Length = 734 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 170/591 (28%), Positives = 277/591 (46%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 ++W + + + +K + A++L R + + + FL + L DP + Sbjct: 6 YQWEIQEEKPD-SGFFQLAKKEGLSQESAQILYERGIQTPEQVDTFLRADLSHLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI QAI N+E+I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMEKAVSRIRQAIENAERILVYGDYDADGMTSASIMKETLEMMGAEVRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G + ++A+ +A QG+DVIV DHH + A+A Sbjct: 124 YGPNLSVYKYFIQQEAISLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHGLPDTLPEAFA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F + + + LDLVA+ TV D+ Sbjct: 184 IIHPEHPDAEYPFKYLAGCGVAFKLATALLEEVP-----------TEFLDLVAIGTVADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312 V L G NR V GL + R GL+ L+ + E +G+ I P +NA GR+ Sbjct: 233 VSLQGENRILVKNGLSILRHTERVGLQELMALAGVDFEQFNEEVIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A +++ N+ R+ + + ++A V V V Sbjct: 293 DPNPAIELLTGFDEEEALAIAEMINLKNEERKALVQTIYDEALQMVDL------SKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ + ++ ++G GS RSI+ +I + + Sbjct: 347 LAKEGWHPGVLGIVAGRIMEEISQTVIVLN-CDNGYAKGSARSIDAINI--FEALNAKRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ GGHA AAG+T+ N L F ID +L+ ++I L Sbjct: 404 LMTAFGGHAGAAGMTLPVDNLEALAQALSDFIVENHIDCKQKNSLMIDSILDLEHLSIEL 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + L+S P+G GNP PVF + +L R + HL++ + + S T +AF Sbjct: 464 LKSLQSIAPFGMGNPKPVFLVQDFQLLQARTLGANSAHLKLRLQ-KGSVTTDLLAFNQ-- 520 Query: 551 TPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G L + R + + L VN W G QL ++DA + Sbjct: 521 ---GHLLQDFQQARGLELAVTLSVNSWNGKTTLQLMLVDARVTGLQLIDIR 568 >gi|81300695|ref|YP_400903.1| exonuclease RecJ [Synechococcus elongatus PCC 7942] gi|81169576|gb|ABB57916.1| exonuclease RecJ [Synechococcus elongatus PCC 7942] Length = 684 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 171/585 (29%), Positives = 289/585 (49%), Gaps = 26/585 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP-L 73 RW+ ++A + +P ++A+VL+NR + +I A+D+L P + L PDP Sbjct: 29 QRWILAPSS---SQATVLATALNLPPVLAQVLINRGLGAIADARDYLKPEQQEL-PDPRE 84 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D ++ + +AI + ++I I GDYD DG S AL++R A IP R+ + Sbjct: 85 EFEDLVESVLLLEKAIRSGDRIAICGDYDADGMTSTALLLRTFRQLGAKAEYAIPSRMQE 144 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N ++E+F G ++++TVD G +Y + A G+ VIV DHH + E PA A Sbjct: 145 GYGINERIVEEFAASGVRVVLTVDNGIAAYQPIARARELGLTVIVTDHHDLPPELPPANA 204 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP L + S L GV +++ + + + + LL+L L T+ D+ Sbjct: 205 ILNPKLLPEESPYHGLAGVGVAYVLALCVAEQFNRQ-----AELIRPLLELYTLGTIADL 259 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGR 310 PL G+NR ++ +GL + + G++AL+E + + E++G+ +GP INA GR Sbjct: 260 APLTGVNRRWLQRGLRLLPQSQLVGVQALMEAAGVKTSDRSLKPEDIGFKLGPRINAIGR 319 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 IG+ + LL ++D + LA +V NQ RR + + E+A A V + D +Q +V Sbjct: 320 IGDPQVVIELLTTEDRDRAQELAGICEVTNQERRGLCDRITEEAIAIVEAEGFDNRQTAV 379 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +V+ WH G++G++A+RL E++G P F S+EEDG GS R FD+ + Sbjct: 380 LVLAQPNWHHGVIGIVASRLVERYGVPVFISSYEEDGHLRGSARGTPEFDVFAALEHC-- 437 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L + GGH A G ++ N + FA + +P P +ID L + ++ Sbjct: 438 RDVLGRFGGHRAAGGFSLSAENLSAWRSRLEAFAADCLPVDCRRPAIQIDAELPIALASL 497 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L + + P+G N P++ N + R + HL++T S+ + A+ +R Sbjct: 498 NLFEQQQQLQPFGIANDEPLYWAKNLAILDQRRMGNGQEHLKLTLSDGQSK-VTAVYWRW 556 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 P+ E R+ V +L N W + QL + + Sbjct: 557 GDRPVPE-------DRVDVAYYLRENIWNDRRELQLEIAGIRLSQ 594 >gi|291618682|ref|YP_003521424.1| RecJ [Pantoea ananatis LMG 20103] gi|291153712|gb|ADD78296.1| RecJ [Pantoea ananatis LMG 20103] Length = 579 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 184/554 (33%), Positives = 272/554 (49%), Gaps = 19/554 (3%) Query: 49 NRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108 R V+ L + L+P L+ DKA + QA+ + IM+ GD+D DGA S Sbjct: 34 QRGVTNA---AELERGAKNLLP-FSALSGIDKAVNLLHQALLDGRCIMVVGDFDADGATS 89 Query: 109 VALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 AL + L N +P+R DGYG +P ++E+ GA++I+TVD G +S+ + Sbjct: 90 TALTVLALRSMGCSNVQYLVPNRFEDGYGLSPEVVEQARARGAEMILTVDNGISSHAGVA 149 Query: 168 YATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227 A GI V+V DHH A A+VNPN D L GV F +++ + LR Sbjct: 150 LAHQHGIAVLVTDHHLPGETLPDADAIVNPNLPDCHFPSRSLAGVGVAFYLMMALRAHLR 209 Query: 228 QDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALI 283 +L LLDLVAL TV DVVPL NR V +GL R + PG+KAL+ Sbjct: 210 TQGWFGVTRSEPNLADLLDLVALGTVADVVPLDANNRILVWQGLSRIRAGKCRPGIKALL 269 Query: 284 ERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 E N + A +LG+ +GP +NA GR+ + ++G LL++DD + MLA +LD LNQ Sbjct: 270 EIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLTDDLSQSRMLASELDALNQM 329 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401 R+ +E M +A A ++ + WH G+VG+LA+RLKE+F RP A Sbjct: 330 RKEIEQGMQSEALALCQKLENEQTDLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAF 389 Query: 402 SFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 + DG GSGRSI G + + G++ K GGHAMAAGL++E + Sbjct: 390 APAGDGMLKGSGRSIAGLHLRDALERLDTLHPGLMQKFGGHAMAAGLSLEEARYDEFRQR 449 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 F + V DG L + ++ ++L AGP+G P P F +L Sbjct: 450 FADLVGEWLAGEALQGVIWSDGALQPAEFSLQTAEVLRDAGPWGQSFPEPAFDGR-FRLL 508 Query: 520 SIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578 R+V HL++ E + + IAF V T + S +++ + L +N +RG Sbjct: 509 QQRLVGERHLKVMVEPLEGGPLIDGIAFNVDTTLWPD----SSVRQVELAYRLDINEYRG 564 Query: 579 SKRCQLRVLDASPV 592 ++ QL + P+ Sbjct: 565 NRSVQLIIEHLWPL 578 >gi|149010771|ref|ZP_01832142.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP19-BS75] gi|147765252|gb|EDK72181.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP19-BS75] Length = 740 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 6 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 64 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 124 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSIPETLPDAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 184 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 293 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 347 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 404 LFIAFGGHAGAAGMTLEVEQLSDLSQILEDYVREKGADAGGKNKLNLDEELDLEALSLET 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 464 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEVSFEVVAFGQGR 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 523 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMMDAR-VEGVQLFNIR 568 >gi|323127505|gb|ADX24802.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 735 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 276/583 (47%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIEDKKPDDG-FFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI QAI + E+I+++GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMEKAVLRIRQAIEDGEQILVYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++AL YA QGIDVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEALSYAQTQGIDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ +I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLTMLKHTERVGLQELMSLSSIDLDQFTEDAVGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKEKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLA-IDNGFAKGSARSLEAINI--FEALSGN 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L D +F ID L+ +++ Sbjct: 402 RDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLEDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 + L+ PYG +P P+F + K+ R + HL+ SQ + +AF Sbjct: 462 DTLKSLDKLAPYGMDHPKPIFYVKDIKVSQARAMGQDQSHLKFKV-SQGKTSFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L +F + + + L VN+W G+ QL ++DA Sbjct: 521 -GSQLQDFQQATG---LELAVTLSVNHWNGNTSLQLMLVDARV 559 >gi|315172399|gb|EFU16416.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1346] Length = 748 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ +P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETRKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|315145039|gb|EFT89055.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX2141] gi|315162331|gb|EFU06348.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0645] Length = 770 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + I+ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAISEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569 >gi|327535254|gb|AEA94088.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis OG1RF] Length = 770 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|315027846|gb|EFT39778.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX2137] Length = 770 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|328946473|gb|EGG40613.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK1087] Length = 739 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKEAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLRDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEEMPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRIGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLTELADILTAYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ +D + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQED-AAFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|258645308|ref|ZP_05732777.1| single-stranded-DNA-specific exonuclease RecJ [Dialister invisus DSM 15470] gi|260402657|gb|EEW96204.1| single-stranded-DNA-specific exonuclease RecJ [Dialister invisus DSM 15470] Length = 667 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 180/586 (30%), Positives = 281/586 (47%), Gaps = 30/586 (5%) Query: 17 RWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 RWV E + IP+ AR+++ R +S + FL ++ L DP + Sbjct: 9 RWVFRGASSEEKVAVPDFFNLNNIPEGTARIMMRRGISTEEKLTHFLYDTLDNL-SDPFL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + +A RRI+QAI EKI+I+GDYDVDG S ++ +R L + N YIP R +G Sbjct: 68 MKGMQQAVRRIIQAIDLKEKIVIYGDYDVDGITSTSICVRCLRKLGADVNFYIPLREEEG 127 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + K EG L+ITVDCG +S D + Q +D+I+ DHHQ A+ Sbjct: 128 YGLNRDAINKLSKEGVSLLITVDCGISSADLVA-EAPQSLDIIITDHHQPPKVLPDCVAV 186 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP++ D L GV F + IY+ L ++ ++LVAL T+ DVV Sbjct: 187 LNPHQEDCPYPYKELAGCGVAFTLCRGIYKELYNEDY-------KENIELVALGTIADVV 239 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-----ISSPITAENLGYMIGPSINAGG 309 L G NR V +G+ GL AL+ + A+ + + + P +NA G Sbjct: 240 SLTGENRILVKEGMARFLLTPIKGLSALLRITGLVNEDTKEILHADYISFGLAPRLNAAG 299 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 RI + G L+ ++ +E E LA L N R+ +E + E+A ++ IQ Sbjct: 300 RITHAKYGVELMTTESGEEAEALAQILCDTNIERQHIEREIYEEALQRIAEL--QIQDDL 357 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+V++G WHPG++G++A+R+ E + RP I+ G G GS RSI F+I + + Sbjct: 358 VLVIDGKDWHPGVIGIVASRILELYHRPVLVITVRN-GVGKGSCRSISAFNIHEALEK-- 414 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 G L++ GGH MAAG ++ +A I+ PV +++ L VN Sbjct: 415 MAGFLIQYGGHKMAAGFSIPAERISEFRKRINDYAKGIITVDDRIPVLELEESLPLDEVN 474 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFR 547 I I L+ PYG+ NP P+FA +++ R + H + SQ+ E ++AI + Sbjct: 475 IEFIRSLDLLEPYGSDNPKPLFASFRVFVETARRIGNDRKHFKCRL-SQNREPVEAIFWG 533 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +G+ G + + ++ W G + QL D PV+ Sbjct: 534 -----IGDKDPCCPGDIVDIVYEPEIHDWYG-EHVQLICKDIRPVK 573 >gi|241896328|ref|ZP_04783624.1| recombination protein J [Weissella paramesenteroides ATCC 33313] gi|241870308|gb|EER74059.1| recombination protein J [Weissella paramesenteroides ATCC 33313] Length = 768 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 179/579 (30%), Positives = 284/579 (49%), Gaps = 27/579 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S ++W I++ + +++A++LVNR + A FL P + L DP Sbjct: 4 SRYQWEF-PEVSNQKAVKTISEAFGVTELIAKILVNRGYDTIEAANAFLRPDLSGLY-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA R++QAI N +KI+++GDYDVDG S A+M L N + ++P R Sbjct: 62 FLLHDMDKAITRLMQAIDNGQKIIVYGDYDVDGMTSTAIMTWALELMGANVDYFVPSRFS 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + ++F EG QL++TVD G + D + + +QGIDVI+ DHH++ E A Sbjct: 122 DGYGPNLANYQRFAAEGMQLLVTVDNGVSGKDEVAWLMSQGIDVIITDHHELPEELPIAT 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + G L AGV F V + +LDL AL TV D Sbjct: 182 AIVHPRHPEGEYPFGGLSGAGVAFKVASALLEE-----------PADEVLDLAALGTVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 V+ L NR V +GL + PGL AL+ S I + +G+ I P +NA GR+ Sbjct: 231 VMSLTDENRIIVKQGLENLKLDPRPGLAALLAAAGTQLSDIDSSTIGFTIAPRLNALGRL 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ G +LL+ DD + + LA ++ LNQ R+ + + + Q ++ V+ Sbjct: 291 EDATTGVQLLLMDDIGDAKPLADHINSLNQERQQLVTTITAA----AQEQAAQLRDDPVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV G+ WH G++G++A++L E+ G+P+ ++ D + GSGRS+ FD+ + Sbjct: 347 VVAGENWHEGVLGIVASKLVEQTGKPTIVLNINGD-EMKGSGRSVPFFDL--FTALDGHR 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ GGHA AAG+TV N L A A P +I ++A+ Sbjct: 404 DLMTAFGGHASAAGMTVPTNNLTALRAALHDAAAQQELANAQKPNLQIAAKVSAADFTKE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYG 550 D L+ P+G GNP P+F + ++ + + HL+ D++ L IAF Sbjct: 464 NFDNLQVLAPFGEGNPEPLFMLDLLGVNQVKTMSDGKHLRF-IAQTDTDQLPVIAFGWGN 522 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + G + N +RG+ QL + D Sbjct: 523 QASA---LAGHFSSLQIIGTMSQNSYRGNISYQLMLRDM 558 >gi|254281924|ref|ZP_04956892.1| single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium NOR51-B] gi|219678127|gb|EED34476.1| single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium NOR51-B] Length = 575 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 167/582 (28%), Positives = 263/582 (45%), Gaps = 20/582 (3%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 ++ R + + ++ R+ R +S A L+ ++ L+P P L D+ Sbjct: 3 PEIKQRPARITSALASSGLSPLLQRIYAARGISDTQA---LDLTLGRLLP-PGQLHRADE 58 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNP 139 AA + AI ++++ GD+D DGA S L + L + + +P+R GYG P Sbjct: 59 AAMLLADAIEGEARVVVVGDFDADGATSCCLAVSVLREMGLQEVSYLVPNRFEYGYGLTP 118 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 ++ LIITVD G S+D + A + GI V+V DHH PA +VNPN+ Sbjct: 119 EIVAIAAERAPDLIITVDNGIASHDGVMAAQSAGISVLVTDHHLPGDTLPPADVIVNPNQ 178 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVP 255 L GV+F VL + LRQ L +L + LDLVAL TV DVVP Sbjct: 179 PRCTFPSKSLAGVGVMFYVLTALRAELRQRGWFELIGRDAPNLGNALDLVALGTVADVVP 238 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA-LIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313 L NR V GL R L E +LG++ GP +NA GR+ + Sbjct: 239 LDHNNRILVDAGLKRIRGGRGRPGIEALFEVAGRDYRQATSVDLGFVAGPRLNAAGRLED 298 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIV 372 ++G L++ + LA +L LN+ RR +E M ++A ++ + ++ + Sbjct: 299 MSVGIECLLATSTASARPLAQRLHDLNRERRDIEQNMQDEALDQLSHFELNETGLPFALS 358 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430 + WH G+VG+LA+R++E++ RP+ + +G+ GSGRS+ I + Sbjct: 359 LYDPAWHQGVVGILASRIRERYHRPTIVFADAGEGELKGSGRSLPSLHIRDALDRVATQN 418 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G++ + GGHAMAAGL++ F ++ F DG L++ + Sbjct: 419 PGLVTRFGGHAMAAGLSLATNRLEDFRRAFDHVVAEMLGHQAPAAEFISDGALSSPEFCL 478 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 +ML +AGP+G G P P F + R+V HL++ ES L AIAF V Sbjct: 479 ENAEMLAAAGPWGQGFPEPTFDGQ-FTVVEQRLVGEKHLKLRLES-GGAALDAIAFNVDL 536 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG + QL + + P+ Sbjct: 537 GIWP----NPATNSIQALYRLGINQYRGDRSPQLVISELWPL 574 >gi|312899537|ref|ZP_07758867.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0470] gi|311293407|gb|EFQ71963.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0470] gi|315169853|gb|EFU13870.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1342] Length = 770 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|307277944|ref|ZP_07559028.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0860] gi|306505341|gb|EFM74527.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0860] Length = 770 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569 >gi|157151363|ref|YP_001450289.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus gordonii str. Challis substr. CH1] gi|157076157|gb|ABV10840.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus gordonii str. Challis substr. CH1] Length = 764 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 174/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W N +K + A +L R V + A ++FL PS+ L DP Sbjct: 29 SKYDWQFATNVTDENFLKK-AKKAGLDPSAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 86 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 87 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 146 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 147 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 206 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 207 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 255 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 256 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 315 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 316 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------EPKKPV 369 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 370 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 426 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 427 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTL 486 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + +AF Sbjct: 487 DTLKSFERLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-AAFEVVAFGQ 545 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 546 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 593 >gi|237796199|ref|YP_002863751.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum Ba4 str. 657] gi|229264065|gb|ACQ55098.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum Ba4 str. 657] Length = 593 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|183603447|ref|ZP_02716915.2| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CDC3059-06] gi|183576928|gb|EDT97456.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae CDC3059-06] Length = 744 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVEN-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSIPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPYRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQILEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F N +++S R + AHL++ S+ + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKI-SKGEVSFEVVAFGQGR 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 S+ K + + L VN W G QL ++DA VEG F + Sbjct: 527 W----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMMDAR-VEGVQLFNIR 572 >gi|83644615|ref|YP_433050.1| single-stranded-DNA-specific exonuclease RecJ [Hahella chejuensis KCTC 2396] gi|83632658|gb|ABC28625.1| single-stranded-DNA-specific exonuclease RecJ [Hahella chejuensis KCTC 2396] Length = 552 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 175/560 (31%), Positives = 274/560 (48%), Gaps = 25/560 (4%) Query: 45 RVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 R+ R V S D L S+ L+ L AA + +A+ +++I+ GD+D Sbjct: 3 RIYAARGVVSGDE----LEYSLSHLLQL-DSLAGAQSAAVILAEALQRNQRIIFVGDFDA 57 Query: 104 DGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 DGA S AL + L + +P+R GYG +P +++ ++ ++ITVD G S Sbjct: 58 DGATSTALGVLALRMFGAAYVDYIVPNRFEFGYGLSPEIVDVALSRKPDVLITVDNGIAS 117 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 D ++ A G+ VIV DHH +E A A+VNPN+ + GV+F V++ + Sbjct: 118 IDGVKAAKRAGLQVIVTDHHLAGAELPEADAIVNPNQPGCDFPSKSIAGVGVIFYVMLAL 177 Query: 223 YRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277 + LR +L +LLDLVAL TV DVV L NR V +GL R ++ P Sbjct: 178 RQTLRDKGWFAATGMIEPNLANLLDLVALGTVADVVSLDANNRILVEQGLRRIRVKRCRP 237 Query: 278 GLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G+ AL++ + + A +LG+ I P +NA GR+ + +G LL+++D + M+A +L Sbjct: 238 GINALLQVAGRNQEKLGASDLGFSIAPRLNAAGRLEDMTVGIELLLTEDPAKALMIAQEL 297 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS-VIVVEGDRWHPGIVGLLAARLKEKFG 395 D LNQ R+ +E M QA + + + + + WH G+VG+LA+R+K++ Sbjct: 298 DGLNQARKEIERDMQAQALSILDRMNWTYDNPPAAVCLYDESWHQGVVGILASRIKDRLH 357 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNF 453 RP A + ++G+ GS RSI G I + G+L K GGHAMAAGL++ NF Sbjct: 358 RPVIAFAPGDNGELKGSARSIPGLHIRDALDAVATRRSGLLSKFGGHAMAAGLSLRPENF 417 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 + FQ+ V DG L+ + + + L++AGP+G P P+F Sbjct: 418 TAFSEAFQEVVAAAVSVDDLQAKLLTDGELSPEELCMNMAIALKNAGPWGQSFPEPLFDG 477 Query: 514 PNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY-GTPLGEFLMQSRGKRMHVTGHL 571 ++ S R+V HL+M + AI F + TP E+ R+ V L Sbjct: 478 Q-FRIASCRIVGERHLKMALADSRSGNCYDAICFNIDPATPFSEW------DRVKVVFRL 530 Query: 572 CVNYWRGSKRCQLRVLDASP 591 +N +RG QL + P Sbjct: 531 DINEFRGHSNLQLLIEYLEP 550 >gi|255536193|ref|YP_003096564.1| Single-stranded-DNA-specific exonuclease recJ [Flavobacteriaceae bacterium 3519-10] gi|255342389|gb|ACU08502.1| Single-stranded-DNA-specific exonuclease recJ [Flavobacteriaceae bacterium 3519-10] Length = 570 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 271/582 (46%), Gaps = 24/582 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W+ + AI+ +++LV R + A++F P++ + +P + Sbjct: 3 QKWIYRP-EPDEETVDAISSSLGFGTFESKILVMRGIDNYQKAREFFKPNLNDIH-NPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132 + D A R+ AI N EKIM++GDYDVDG +VALM +LS YIPDR + Sbjct: 61 MKDMQIAVDRVATAIENGEKIMVYGDYDVDGTTAVALMYLYLSKIVDKKYLEYYIPDRNI 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ N G LII +DCG + D + YA + ID I+ DHH E A Sbjct: 121 EGYGISIEGIDHAKNNGFSLIIALDCGIKAIDKVDYAKSLAIDFIICDHHLPGDEIPDAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D L GV F + + I + +L L DL+A++ D Sbjct: 181 AVLDPKRKDCRYPFKELSGCGVGFKLCQGLNSIYKI-----PEAELFELTDLLAISIAAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V + G NR +GL V R+ N GL+ LI + + N+ + I P INA GRI Sbjct: 236 IVSMTGENRVLAKQGLKVLRKSRNLGLRMLIPEEKL-ATFEISNIVFEIAPKINAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + L++SD+ ++ + + LN +RR M+ + +A +V + Q V Sbjct: 295 QGKAAVELMVSDNLKQAHQIVNDIITLNDSRREMDMSSTTEALLQV--EETQQVQNYTTV 352 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V G W+ G++G++A+RL E + +P+ + +G+ + S RS+ FD+ + E Sbjct: 353 VYGSGWNKGVIGIVASRLTETYFKPTLVFTDGNNGEMVASARSVADFDVHDALENCSEF- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +K GGH AAGL++E+ F + + F+K + P ID + +N Sbjct: 412 -FLKFGGHPAAAGLSMEKDKFDKFREKFEKVVSEKIQQHQKEPSLLIDSDVIPDDLNKDF 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQD-SETLQAIAFRV 548 P+G N P+ A N K+ ++ + HL+ + + ++ + F Sbjct: 471 FSFHRKLAPFGPHNMKPILAMKNQKISGYVKTMGKDNCHLKFYIKQESTGRNIECVGF-- 528 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG+F+ R + + N+W+G+ L + D Sbjct: 529 ---KLGKFVEDFRNRPFDIAFTAEENHWKGNVTYYLNIRDVK 567 >gi|168183172|ref|ZP_02617836.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum Bf] gi|182673590|gb|EDT85551.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum Bf] Length = 593 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 296/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A + G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKDLGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|116627958|ref|YP_820577.1| single strand DNA-specific exonuclease [Streptococcus thermophilus LMD-9] gi|116101235|gb|ABJ66381.1| exonuclease RecJ [Streptococcus thermophilus LMD-9] gi|312278546|gb|ADQ63203.1| Exonuclease RecJ [Streptococcus thermophilus ND03] Length = 736 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 171/592 (28%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + ++H + A++ R + + A +DFL + L DP Sbjct: 4 STYDWKINTKEPD-AGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S +++ L A +Y+P+R Sbjct: 62 YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G +A+ YA QG+DVIV DHH + S+ A Sbjct: 122 DGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P +L GV F + + + +LDLVA+ T+ Sbjct: 182 YAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 D+V L NR V GL + + GL+ L+ + + I+ E + + I P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E + +A++++ N+ R+ + + ++A + V V Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLAKGSARSLESINI--FHALDDH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 I GGHA AAG+T+ N +L D + ++ +D L +++ Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 I LE P+G N PVF + + R + HL+ + Q + +AF Sbjct: 462 DTIRSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFN- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G L EF + + L VN W G QL + D F + Sbjct: 520 KGHLLQEFQQAQG---LELAVTLSVNVWNGQTTLQLMLADVRVDNVQLFDFR 568 >gi|293382871|ref|ZP_06628789.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis R712] gi|291079536|gb|EFE16900.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis R712] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569 >gi|227518879|ref|ZP_03948928.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0104] gi|227553494|ref|ZP_03983543.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis HH22] gi|293389642|ref|ZP_06634097.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis S613] gi|312907658|ref|ZP_07766649.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis DAPTO 512] gi|312910275|ref|ZP_07769122.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis DAPTO 516] gi|227073670|gb|EEI11633.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0104] gi|227177364|gb|EEI58336.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis HH22] gi|291081035|gb|EFE17998.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis S613] gi|310626686|gb|EFQ09969.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis DAPTO 512] gi|311289548|gb|EFQ68104.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis DAPTO 516] gi|315576101|gb|EFU88292.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0309B] gi|315580675|gb|EFU92866.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0309A] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569 >gi|315168912|gb|EFU12929.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1341] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 176/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + A+ Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAF 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|312903438|ref|ZP_07762618.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0635] gi|312951620|ref|ZP_07770515.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0102] gi|310630337|gb|EFQ13620.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0102] gi|310633314|gb|EFQ16597.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0635] gi|315152359|gb|EFT96375.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0031] gi|315158198|gb|EFU02215.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0312] gi|315577754|gb|EFU89945.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0630] gi|323480849|gb|ADX80288.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis 62] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 287/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|229549890|ref|ZP_04438615.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis ATCC 29200] gi|229304963|gb|EEN70959.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis ATCC 29200] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ I P +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIAPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|254422234|ref|ZP_05035952.1| single-stranded-DNA-specific exonuclease RecJ, putative [Synechococcus sp. PCC 7335] gi|196189723|gb|EDX84687.1| single-stranded-DNA-specific exonuclease RecJ, putative [Synechococcus sp. PCC 7335] Length = 819 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 173/600 (28%), Positives = 293/600 (48%), Gaps = 32/600 (5%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLM 69 S RW Q ++A I A+ ++A+VL+NR + + + + +FL+P L Sbjct: 32 ASFPAQRWQIFPAQ--KSQADHIAAVTALSPLLAQVLINRGIYTPEQSWEFLDPETIQLP 89 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 D +K+ + QAI EKI+I GDYD DG S AL+MR L + IP Sbjct: 90 SPLCEFPDLEKSLELLEQAITLEEKILICGDYDADGMTSTALLMRSLRYLGAQVAYAIPS 149 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYG N ++E F G LI+TVD G T+Y + A G+ +I+ DHH + + Sbjct: 150 RMHEGYGINQRMVEDFHAAGGNLILTVDNGITAYAPISRAKELGLTIILTDHHDLPEQLP 209 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 PA A++NP + + S + GV +++ V + + L + + LL L L T Sbjct: 210 PADAILNPKLIRESSPYRGVAGVGVAYVLAVCLAQRLNKQQDLTAT-----LLALFTLGT 264 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINA 307 + D+ PL G+NR +V +GL + + PG++ALIE + + E +G+ +GP INA Sbjct: 265 IADLAPLTGVNRRWVKRGLKLLPKSLIPGVQALIEVAGLSKETALRPEAIGFRLGPRINA 324 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM----ESAMLEQAEAKVLTQCD 363 GRI + + LL +DD AM+ + N RR M E +E +A++ + Sbjct: 325 VGRIADPQIVIDLLTTDDVGVALQQAMQCEEANLLRREMCQIIEKQAIEWCDAQIESGLI 384 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDI 421 ++Q+ V+VV WH G++G++A+RL E++G P F ++E++ + GS RSI F++ Sbjct: 385 NLQKERVLVVVQPDWHHGVIGIVASRLVERYGVPVFIGTYEDENKKEIRGSARSIPEFNV 444 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + ++F + ++ K GGH A G + ++ FA + P+ K+D Sbjct: 445 FEALTFC--DDLMNKYGGHQAAGGFSFRSNKLRQVKSRLSNFARKHLQPDHLKPLIKVDV 502 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSE 539 V + L L+ P G NP+PVF + +V+ HL++T + S+ Sbjct: 503 HAPLEEVTLDLYQQLDQIHPCGIKNPDPVFWTAAVTIVEQKVIGKNSDHLKLTMAHKASD 562 Query: 540 -----TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 ++AIA+R + + + L +N W+G + +L ++ P + Sbjct: 563 DAQKVVMKAIAWRWAEYY-------PLPRILDIAYKLRLNEWKGHRTVELDLVGVRPSKP 615 >gi|229545699|ref|ZP_04434424.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1322] gi|300860375|ref|ZP_07106462.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TUSoD Ef11] gi|307275850|ref|ZP_07556989.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX2134] gi|307291873|ref|ZP_07571744.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0411] gi|229309149|gb|EEN75136.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX1322] gi|300849414|gb|EFK77164.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TUSoD Ef11] gi|306497139|gb|EFM66685.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0411] gi|306507542|gb|EFM76673.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX2134] gi|315029261|gb|EFT41193.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX4000] gi|315031947|gb|EFT43879.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0017] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 176/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + A+ Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAF 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRKIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|315150413|gb|EFT94429.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0012] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 179/592 (30%), Positives = 288/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPGAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELSI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E GK GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGKTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 AFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|307273101|ref|ZP_07554347.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0855] gi|306510086|gb|EFM79110.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0855] Length = 770 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|229827393|ref|ZP_04453462.1| hypothetical protein GCWU000182_02781 [Abiotrophia defectiva ATCC 49176] gi|229788331|gb|EEP24445.1| hypothetical protein GCWU000182_02781 [Abiotrophia defectiva ATCC 49176] Length = 580 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 173/587 (29%), Positives = 268/587 (45%), Gaps = 23/587 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + + I + I I ARVLVNR +S D ++LN + L P ++ Sbjct: 4 RWYMRTIRGDFD---GIAARFGISKIAARVLVNRGMSNDEDIDEYLNAEEKEL-ARPELM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A + + I EKI I GDYDVDG S ++ F + + IP R+ DGY Sbjct: 60 RDLTNACEILNRKINEGEKIRIIGDYDVDGVCSTFVLYDFFRSMGADISYVIPHRVQDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAYA 193 G N ++ K +G I+T D G +Y+ +++A G+ V++ DHH + ++ PA Sbjct: 120 GINIDIVNKAKEDGIDTIVTCDNGIAAYEQVKHAKEIGLTVLITDHHDIPVNNDLPPADT 179 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + NP R D LC AGV + ++ ++ L ALAT+CDV Sbjct: 180 VTNPKREDCNYPFKGLCGAGVAYQLINHYAEKYGNNSAKLKTEIKNKYLAFTALATICDV 239 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRI 311 + LIG NR V KGL N GL+AL+E IT + G++IGP INA GR+ Sbjct: 240 MELIGENRIIVKKGLKAIYNTENVGLRALLEVSGLVNKDEITVYHCGFIIGPMINASGRL 299 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +L + D + A +L LN R+ + L +A + + V+ Sbjct: 300 ESAVKAIKLFLESDRERALSEANELQGLNNERKDITEQSLIRATEIA--ESSEYLNDKVL 357 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ H I G++A R+KEKF +P+ ++ E G GSGRSIE +++ + +S E Sbjct: 358 VILVPDCHESIAGIVAGRIKEKFYKPTLIFTYAERGI-KGSGRSIEDYNMFEEISKCSE- 415 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-----VPALITTPVFKIDGVLNAS 486 K GGH MAAG +++ + F K + + P D L Sbjct: 416 -CFSKFGGHPMAAGFSLKGETTEEQIEVFNKLRKMLNENTTLTEEELKPKIFFDMELPPY 474 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQD-SETLQA 543 V LI+ L PYG GN P FA N +Q+ RV+ + +++ + A Sbjct: 475 YVTEELIEELLRFEPYGTGNKVPTFARRNMYIQTYRVIGKNNNAIKLELTDGGEGQVHNA 534 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F + E+L+ K++ + +N +RG K QL++ + Sbjct: 535 IWFG-DASVFEEYLLNKEEKKLDIIYSPQINEYRGFKNIQLKIEEYR 580 >gi|332994408|gb|AEF04463.1| single-stranded-DNA-specific exonuclease RecJ [Alteromonas sp. SN2] Length = 573 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 174/562 (30%), Positives = 277/562 (49%), Gaps = 19/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ R+ RNV L ++ L L AA + I + ++I Sbjct: 19 LHPVIDRIYRGRNV---QDISELENGLKGLTH-FNELKGMAGAASILADTIEQDKTLVIV 74 Query: 99 GDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S+A+ +R L + +P+R GYG + +++ +GA +IITVD Sbjct: 75 GDFDADGATSIAVCIRSLHMMGFKKVDYLVPNRFDFGYGLSVPIVDIAKQQGADVIITVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G D + +A GI+VIV DHH + PA A+VNPN+ +L GV F Sbjct: 135 NGIACIDGVTHAKALGIEVIVTDHHLPGDDLPPADAIVNPNQPGCTFPSKNLAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +++ + L+Q N +L SLLD+VA+ TV DVV L NR V +GL R Sbjct: 195 IMLALKTELQQRNWFTKKNLPAPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIRA 254 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG+KAL+E N + +T+ +LG++IGP +NA GR+ + + G L+ DD+ + M Sbjct: 255 GKCRPGIKALVEVANRDCAHLTSTDLGFVIGPRLNAAGRLDDMSQGIACLLEDDTMQARM 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQ-CDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN+ RR +E+ M QAE + + + +VV +H G++G++A RL Sbjct: 315 IASELDALNRERREIETGMKAQAEQVLEKMSLAEGDIPAALVVYQADFHQGVIGIVAGRL 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KEK+ +P A + +++ GS RSI G I ++ G++ K GGHAMAAGL++ Sbjct: 375 KEKYLKPVIAFAHQDEATIKGSARSIPGVHIRDVLDEVNTRFPGVIDKFGGHAMAAGLSL 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 N F A + L V DG L +++ +L AGP+G G + Sbjct: 435 PVANLAAFQKAFIDIAKQHMDKLDGNQVLLSDGSLTGQELSLPFAHLLRQAGPFGQGFES 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 P+F ++ R+V HL++ + AIAF + + K++ + Sbjct: 495 PLFDGE-FQVVQQRLVGEKHLKLVLREPSVGEVDAIAFNIDIKAWP----NAMVKQVRIA 549 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 L VN +RG + QL + Sbjct: 550 YRLDVNVFRGQESVQLIIEQLE 571 >gi|188585913|ref|YP_001917458.1| single-stranded-DNA-specific exonuclease RecJ [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350600|gb|ACB84870.1| single-stranded-DNA-specific exonuclease RecJ [Natranaerobius thermophilus JW/NM-WN-LF] Length = 831 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 174/589 (29%), Positives = 279/589 (47%), Gaps = 22/589 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 +W + A + I ++A++LVNR V+ + DFLNPS L P +L Sbjct: 7 KWNIKT--DYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLH-SPWLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +A I + I ++E I+I+GDYD DG + AL+ +LS N YIPDR DGY Sbjct: 64 PDMKQAVELIDKIIKSNEPILIYGDYDADGVTATALLYEYLSTKFDNIYYYIPDRFKDGY 123 Query: 136 GPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 G + + +LIITVDCG S ++ G VIV DHH+ + A+A Sbjct: 124 GLTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPSAHA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP +L GV F ++ + + + N L LDLV + T+ D+ Sbjct: 184 VINPKIHTTNYPFKYLAGVGVAFKLVSALAEQI--ETHYDFNELLKQYLDLVTIGTIADL 241 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312 VPL NR +V KGL + PG+KAL++ + + + A +G++IGP INA GR+ Sbjct: 242 VPLTSENRIFVSKGLQYIDER-RPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLA 300 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ +LL LA KLD N+ R+ +E + ++A+ + + + V+V Sbjct: 301 SADEAVQLLTESSESAARELAKKLDKENRERQKVEQKITKEADEMINRNNL-LARGPVLV 359 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V + WH G+VG++A+RL EK+ RP ++ +E GK GS RSI GF++ + + + Sbjct: 360 VWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALKSC--D 417 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+K GGH +AAGL +E + A + P ID + A+ Sbjct: 418 NLLIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRE 477 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 L + + P+G GNP PV + ++ S R V HLQ+ F++ L I F+ Sbjct: 478 LAEEISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMG-VLDGIWFK-- 534 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLRVLDASPVEGH 595 G + G + ++ ++ L++ D + Sbjct: 535 GAEKAKEKNIKTGMPVQAAFIPKISTFKSKSSKGHLSLQLCDMQLPDNQ 583 >gi|325690515|gb|EGD32518.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK115] Length = 739 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLDPAAASLLYQRGVQTEEALQEFLEPSLNQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 HDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G ++A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGFEAIDLAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ +D + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQED-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|193213322|ref|YP_001999275.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobaculum parvum NCIB 8327] gi|193086799|gb|ACF12075.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobaculum parvum NCIB 8327] Length = 571 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 157/581 (27%), Positives = 267/581 (45%), Gaps = 18/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 +RW L + + + +A L NR +S + A+ F PS+ ++ P + Sbjct: 4 YRWTRL--DPEPTLVQGLAESINVSMPIAAALCNRGISSFEEARQFFRPSLDDVL-SPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 A R+++A+ E IMI+GDYDVDG A++ FLS YI DR +G Sbjct: 61 FNQMKLAVTRVLKAVSGGEPIMIYGDYDVDGTTGTAMLSLFLSEMGARVCHYINDRFSEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + ++ + +G +L+ITVDCG + D +Q ++GIDVIV DHH+ + A+A+ Sbjct: 121 YGLSEAGLDYAVEQGVRLVITVDCGIRALDEVQACADRGIDVIVCDHHEAEELPA-AHAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P LC GV ++ I + LDLVA+AT D+V Sbjct: 180 LDPKVEGCSYPFRELCGCGVALKLVQAIVETQG-----WPRSRWVQYLDLVAIATAADLV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 L NR Y+ +GL + RR LKA++ + + N+ + I P INA GR+G Sbjct: 235 SLTDENRVYLREGLELMRRSPRESLKAMLAFMKVKPVEFDLMNITFGIAPRINAAGRMGS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + R L++ + E A L+ LN +RR +++ + +AE V C S IV+ Sbjct: 295 VEVAMRWLLAREPDEAHRCATALEELNASRREIDAEITTKAETMVAGHCASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A++L +K P+ + +G GS RS++ +I +++ E Sbjct: 353 YDEAWHLGVLGIVASKLLDKHLLPTAVMG-GANGLIKGSVRSVDNLNIHEVLQHCREH-- 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG T+ + F + ++P ID L+ + + Sbjct: 410 LEQFGGHHQAAGFTLRPDRLAAFRERFDEVCREMLPVEKRQKELLIDAELSLDDITPNFL 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++LE P+G N P+F +L +++ H++ + + S + I F Sbjct: 470 NVLEQFSPFGFANREPLFVTAPCRLVGKPKLLKERHVKFMVQGERSSRFEVIGFDRPDI- 528 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + + W G + QLR+ D + E Sbjct: 529 YKDLERIGNVAPLQLVCIPEKKQWNGREYVQLRLKDMAFSE 569 >gi|300070213|gb|ADJ59613.1| single strand DNA-specific exonuclease [Lactococcus lactis subsp. cremoris NZ9000] Length = 742 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 164/579 (28%), Positives = 273/579 (47%), Gaps = 34/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 + W L I++KH + ++ +RVL R + + + FL P++ L DP + Sbjct: 6 YDWKLDET-VLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA +RI+ AI E I+I+GDYD DG + ++M L A +Y+P+R DG Sbjct: 64 LHDMEKATQRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + + + NE LIITVD G +A+ +A G+DVI+ DHH + + AYA Sbjct: 124 YGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQMPNAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + +L GV F V + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPESQYPFKYLAGVGVAFKVACALLEYAP-----------REMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L++ + +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D E +A +D N R+ + + +A A + + V + Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDE-------PVQI 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A RL E+ +P ++ EE+G GS RSI+ FDI + Sbjct: 346 LYHKDWHKGVLGIVAGRLLEQIHKPVIMLA-EEEGILRGSARSIDSFDI--FKALNAHRE 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAG+T+ N + F + L ++ + +++A Sbjct: 403 LFIAFGGHKQAAGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLDEISLAT 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 I+ L P+G NP P F ++K+ R + HL++ + ++ + + A+ F+ Sbjct: 463 INNLAKLAPFGMDNPKPRFLVEDYKVIRSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L +++ + L N W G+ QL + DA Sbjct: 522 EELEFEQAETK-----LVVTLSSNSWNGNTSLQLMIEDA 555 >gi|157374034|ref|YP_001472634.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sediminis HAW-EB3] gi|157316408|gb|ABV35506.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella sediminis HAW-EB3] Length = 574 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 169/563 (30%), Positives = 278/563 (49%), Gaps = 21/563 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ ++ +R S + + L +R P + + A I AI I+I Sbjct: 20 LSPLLKQIYASRGSSAEDCELTLARLLR-----PDTMKGLAEGAAIIADAIKAQRSILIM 74 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S ++ M L+ + IP+R GYG +P ++ ++GA+L+ITVD Sbjct: 75 GDFDADGATSTSVCMLALTMMGATKVDYLIPNRFDYGYGLSPEIVAVAHSKGAELLITVD 134 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + ++ A G+ V++ DHH A A+VNPN++D + GV F Sbjct: 135 NGISSIEGVEAAKALGMQVVITDHHLPGKTVPDADAIVNPNQVDCNFASKSIAGVGVAFY 194 Query: 218 VLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + L + N +L LLD+VAL TV DVV L NR V GL R Sbjct: 195 LMSALRAELGKRNWYQEQGLVVPNLGQLLDIVALGTVADVVALDSNNRILVEAGLQRVRA 254 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ DD Sbjct: 255 GRCRAGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMTARR 314 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEA-KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +LD LN RR +E+ M ++A + ++ + I + + WH G++G+LA+R+ Sbjct: 315 MAAELDGLNAERRDLEADMQQEALKSLASVELNEEELPWGIALFQEDWHQGVIGILASRI 374 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 K+++ RP A + +G+ GS RSI+G + ++ G+++K GGHAMAAGL++ Sbjct: 375 KDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINTRHPGMILKFGGHAMAAGLSL 434 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + +F + + ++ + T DG L + + + L +AGP+G P Sbjct: 435 KAKDFPAFEQAYDQSVRELLKPELLTGELVTDGELTPDEMKLDIAWELRNAGPWGQEFPE 494 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F K+ R+V HL++ E++ +T L AIAF V T + + K V Sbjct: 495 PLFDGY-FKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNVDLTTWPDATI----KHARV 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDAS 590 L VN +RG++ QL V Sbjct: 550 VYKLDVNEFRGNQSLQLMVDQIE 572 >gi|257092663|ref|YP_003166304.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045187|gb|ACV34375.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 573 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 180/582 (30%), Positives = 277/582 (47%), Gaps = 28/582 (4%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 LL + R ++ + ++AR+ R + A+ L+ + L+ P LT + Sbjct: 4 LLSRPVSQRVQWQLEQQGLHPLLARLYAARGIR---ARSELDYDLASLLA-PASLTHAAE 59 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 AA + AI + +I+I DYD DGA + A+ MR L + +P+R GYG +P Sbjct: 60 AAVLLADAIAANARILIVADYDCDGATACAVGMRALRAFGACVDYLVPNRFTYGYGLSPD 119 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 +++ LI+TVD G S D + A GI ++ DHH E A +VNPN Sbjct: 120 IVDLAATRQPNLIVTVDNGIASVDGVARARQLGIATLITDHHLPGDELPAADCIVNPNLE 179 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-----PLNFDLLSLLDLVALATVCDVVP 255 HL GV+F V++ + LR N L +LLDLVAL TV DVV Sbjct: 180 HCDFPSKHLAGVGVIFYVMLALRAELRARNWFAESSGRREPRLATLLDLVALGTVADVVR 239 Query: 256 LIGLNRAYVVKGLMVARRQGNPGL--KALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + +A +LG+MIGP +NA GR+ + Sbjct: 240 LDHNNRVLVSQGLQRIRAGRLTPGLRAIFRAAGRNPAQASAFDLGFMIGPRVNAAGRLAD 299 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV- 372 +LG L++DD +A +LD LN+ RR +ES M EQA ++ + + Sbjct: 300 MSLGIECLVTDDEGRALNIAQQLDALNRQRREIESGMQEQALIQLTAATAALDASPAAAG 359 Query: 373 --VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA-- 428 + WH G+VG++AAR+KEK RP+FA + E G+ GSGRSI G + + Sbjct: 360 VALFDTDWHQGVVGIVAARIKEKLHRPAFAFARGEGGEIKGSGRSIAGLHLRDALDLVAK 419 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 G+L++ GGHAMAAG+T+ ++F R + F + ++ T + DG L + + Sbjct: 420 RAPGLLLRFGGHAMAAGVTLREIDFARFQELFAQVVDELLAPADRTRTLETDGSLESGYL 479 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 +IA +LE A +G G P P+F ++S R++ HL++ + ++ L AI F Sbjct: 480 SIATARLLE-AEVWGQGFPAPLFEDEFV-VESQRILKDKHLKLRLR-KGAQRLDAIQFNF 536 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 Q+ G M L +N + G + QL + Sbjct: 537 D---------QAPGATMRAAYRLAINDFNGVQTPQLMIEHIE 569 >gi|332187561|ref|ZP_08389298.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas sp. S17] gi|332012490|gb|EGI54558.1| single-stranded-DNA-specific exonuclease RecJ [Sphingomonas sp. S17] Length = 584 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 238/598 (39%), Positives = 330/598 (55%), Gaps = 19/598 (3%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 M D LG+ SI G W L D+V ++L+ R + +D Sbjct: 1 MTD--VLGIAQSILGQPWRWRALSADARDGLV------HDDLVTQLLLARGCPPEAVEDH 52 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 PSIR MPDP I D D+AA R+ A+ E + IFGDYDVDGA S ALM+R L Sbjct: 53 KQPSIRSFMPDPSIFRDMDRAADRLADAVIAGEPVAIFGDYDVDGATSSALMVRLLRSLG 112 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 ++ YIPDR+ +GYGP + + + EGA LI+TVDCG+ +++ L A GI+V+V+D Sbjct: 113 LSPRAYIPDRLAEGYGPTEAALLRLQAEGANLIVTVDCGAQAFEPLAAAHAAGIEVMVVD 172 Query: 181 HHQVKSEEIPAYALVNPNRLDDL--SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNF 236 HH+ + A+A+VNPNRLD+ + GHL A GV FL+ + R LRQ Sbjct: 173 HHKCATLLPLAHAVVNPNRLDEDEGAAHGHLAAVGVCFLLGAALIRTLRQRGFFADRPEP 232 Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN 296 LL LLDLVAL TV DV PL GLNRA+V +GL V ++ N GL +L E ++ T + Sbjct: 233 RLLDLLDLVALGTVADVAPLRGLNRAFVAQGLKVMAQRRNIGLASLTEAARLTRAPTCSD 292 Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356 LG+ +GP INAGGR+G ++LG RLL ++D E +A +L+ N RR +E+ + AE Sbjct: 293 LGFALGPRINAGGRVGRADLGVRLLTTEDPAEARAIAEELNHFNDERRAIEAGVQATAET 352 Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI 416 V V +V G WHPG++G++A RLKEK RP+ I+ +E+G G GSGRSI Sbjct: 353 IVDR------GRQVALVSGTGWHPGVIGIVAGRLKEKLDRPAIVIAIDENGIGKGSGRSI 406 Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 G D+G + A E G+L+ GGGHAMAAGLTV L DF + V Sbjct: 407 TGVDLGAAILAAKEHGLLIAGGGHAMAAGLTVAANRISELADFLEDRLAQAVTRASAGRA 466 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536 +D VL VN AL+ +E+ GPYG G P P A ++ +V H++ Sbjct: 467 LLVDAVLAPGGVNPALVGSMEAGGPYGMGWPAPRIAAGPFRVIRADLVGTNHVRAIIAGA 526 Query: 537 DSETLQAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 D +L+A+AFR TPLG+ L+ +R+ + G V+ W G +L + DA+ + Sbjct: 527 DGRSLKAMAFRHAETPLGQALLGAGSTRRLWLAGRAKVDDWSGRDVAELHIEDAAWAD 584 >gi|170760035|ref|YP_001788080.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A3 str. Loch Maree] gi|169407024|gb|ACA55435.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A3 str. Loch Maree] Length = 593 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 179/605 (29%), Positives = 294/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKSENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYICKFGGHPMAAGLTIEERNVDKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LPLKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVNEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|322807073|emb|CBZ04647.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum H04402 065] Length = 593 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYTI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPTIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LALKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|116511427|ref|YP_808643.1| exonuclease RecJ [Lactococcus lactis subsp. cremoris SK11] gi|116107081|gb|ABJ72221.1| exonuclease RecJ [Lactococcus lactis subsp. cremoris SK11] Length = 742 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 163/579 (28%), Positives = 273/579 (47%), Gaps = 34/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 + W L I++KH + ++ +RVL R + + + FL P++ L DP + Sbjct: 6 YDWKLDET-VLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA +RI+ AI E I+I+GDYD DG + ++M L A +Y+P+R DG Sbjct: 64 LHDMEKATQRILSAIEQGEHILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + + + NE LIITVD G +A+ +A G+DVI+ DHH + + AYA Sbjct: 124 YGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQLPNAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + +L GV F V + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPESQYPFKYLAGVGVAFKVACALLEYAP-----------REMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L++ + +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMKYAGVDFDKVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D E +A +D N R+ + + +A A + + V + Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDE-------PVQI 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A RL E+ +P ++ EE+G GS RSI+ FDI + Sbjct: 346 LYHKDWHKGVLGIVAGRLLEQIHKPVIMLA-EEEGILRGSARSIDSFDI--FKALNAHRE 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH A G+T+ N + F + L ++ + + +++A Sbjct: 403 LFIAFGGHKQAVGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLAEISLAT 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 I+ L P+G NP P F ++K+ R + HL++ + ++ + + A+ F+ Sbjct: 463 INNLAKLAPFGMDNPKPRFLVEDYKVIQSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L +++ + L N W G+ QL + DA Sbjct: 522 EELEFEQAETK-----LVVTLSSNSWNGNTSLQLMIEDA 555 >gi|329890045|ref|ZP_08268388.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas diminuta ATCC 11568] gi|328845346|gb|EGF94910.1| single-stranded-DNA-specific exonuclease RecJ [Brevundimonas diminuta ATCC 11568] Length = 570 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 209/560 (37%), Positives = 310/560 (55%), Gaps = 5/560 (0%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 Q + + +AR L +R V+ + DFL P+++ L P+P D D AA IV A+ Sbjct: 7 QALGLDEPLARALASRGVAAEQGADFLKPTLKALFPNPSSFMDMDAAAAAIVDALQAQAS 66 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 I +F DYDVDGA+S AL++R+ + +Y+PDR+ +GYGP+ + GA L+I Sbjct: 67 IHVFADYDVDGASSAALLVRWFRTLGADLPIYVPDRLTEGYGPSARAFDTLKARGADLVI 126 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVDCG+ + +A+ +A G+ V+VIDHH ++ E A+VNPNR SGQG+L AAGV Sbjct: 127 TVDCGAAANEAVAHAAAIGLKVVVIDHHMMREEPPACLAVVNPNRPGCGSGQGNLAAAGV 186 Query: 215 VFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VF++L + R R D+ LDL A+ +CDV L G NRA GL V Sbjct: 187 VFVLLAALNREARGRGLFEGKAEPDIRQWLDLAAMGAICDVTGLTGFNRALTSLGLGVMS 246 Query: 273 RQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 NPGL+AL+ + G+++GP INAGGRIG+S+LG+RLL +DD E M Sbjct: 247 HWRNPGLRALLAAAGAEPGPAKTNHAGFILGPRINAGGRIGKSDLGARLLSTDDPDEARM 306 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 LA +LD LN RR +E+ + EQA +V ++V+VV G+ WHPG+VG++A RL+ Sbjct: 307 LAQELDALNLARREVEAEVTEQAVRRVEATGAHADDSAVVVVSGEDWHPGVVGIVAGRLR 366 Query: 392 EKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 E++ +P I + +G G GSGRS G ++G+ V A E +L+ GGGHAMAAGLTV Sbjct: 367 ERWRKPVIVIGVDAVNGVGKGSGRSQPGMNLGRAVQAAWNESLLIAGGGHAMAAGLTVAA 426 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 L F + + ++D +++ A L + E PYG NP P+ Sbjct: 427 DRVDELRAFLNERLSTERVEAVAQDWVEVDALIDPRAATRDLFEAFEQLAPYGPANPEPL 486 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 FA + + +N H++ D +++AIA+R P G+ L+ +G ++V G Sbjct: 487 FALEGVQAREPVAMNGGHVRCRLVGPDGASVRAIAWRCADLPTGKALLAGQGG-VNVVGR 545 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L + W G + Q + D + Sbjct: 546 LRADDWNGRRGVQFEIEDVA 565 >gi|325694707|gb|EGD36613.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK150] Length = 740 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N L D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVEFLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDNH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELADILTAYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-AAFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|319938922|ref|ZP_08013286.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus anginosus 1_2_62CV] gi|319811972|gb|EFW08238.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus anginosus 1_2_62CV] Length = 744 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 172/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + +K + VA ++ R + + A +DFL PS+ L DP Sbjct: 4 SKYDWQIATNFSDESFIKK-AKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI QAI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YELHDMDKAVTRIRQAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LI+TVD G ++A++ A + G+DVIV DHH + A Sbjct: 122 DGYGPNASVYKYFIENQGISLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEVLPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P + HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIIHPEHPEADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 D+V L NR V GL V + GL+ L + + + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRILVKYGLSVLKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N+ R+ + + ++A+ V V Sbjct: 291 LDDPNPAIELLTGFDEEEARDIALMINQKNEERKEIVQKIYDEAKTMV------DPDNPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ E+ GS RSIE DI + Sbjct: 345 QVLASEGWNPGVLGIVAGRLLEELHQPVIVLN-IENDLAKGSARSIEAVDI--FEALDPH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L + + L T +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNKLDLSTKNDLFLDEELSLPDLTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N PVF + K+++ R + HL++ D + +AF + Sbjct: 462 ETLKNFEKLAPFGMDNKKPVFYLKDFKVENARTMGAGNTHLKLKISQAD-AVFEVVAFGL 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S+ K + + L VN W G QL ++DA F + Sbjct: 521 GDL----ATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVNGIQLFNIR 568 >gi|219669629|ref|YP_002460064.1| single-stranded-DNA-specific exonuclease RecJ [Desulfitobacterium hafniense DCB-2] gi|219539889|gb|ACL21628.1| single-stranded-DNA-specific exonuclease RecJ [Desulfitobacterium hafniense DCB-2] Length = 801 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 178/584 (30%), Positives = 280/584 (47%), Gaps = 24/584 (4%) Query: 14 SGFRWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPD 71 + W G + + + Q+ I +VA +L R + + +FL PS+ L Sbjct: 2 TKRIWTKPQPLPGFKDSRSPLPQRLGITPVVADILRQRGIEAEEEIMEFLRPSLLNL-NS 60 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +A R+ A EKI+I+GDYDVDG S AL+ + L+ A YIP R+ Sbjct: 61 PFAFREMARAIERLELARAQEEKILIYGDYDVDGVTSTALLYKVLTDLGFKAVAYIPSRM 120 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG + + K + +++ITVDCG T+ + ++YA +QGID+I+ DHH+ A Sbjct: 121 DEGYGLHKDAITKALQANVKVMITVDCGITAVEEVEYARSQGIDIILTDHHEPPDSLPQA 180 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA++NP D L GV F + + L + + +L +LDL AL T+ Sbjct: 181 YAILNPKVKDSGYPFRDLAGVGVAFKLAQALLERLEEGKSGA--YAVLEILDLAALGTIA 238 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 D+VPL NR V GL + GL+ L+E P+ A + +M+ P INA GR Sbjct: 239 DLVPLTHENRIIVAYGLRQMENTIHLGLRTLLEECGLWGKPLKAGQIAFMVAPRINAAGR 298 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + G LL++ + LA L N R+ E + +A + V Sbjct: 299 MDSARAGLELLLTGHEERAVELARFLSRENTLRQDTEKEIFAEAVEILEKNPM----PRV 354 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 IV+ G WH G++G++A+RL E++ RP F I+ EE+ G GS R I G+ + + + Sbjct: 355 IVLSGKNWHHGVIGIVASRLVERYYRPVFLIAEEEE-IGKGSARGIGGYHV--LDELKAQ 411 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L K GGH+ AAG +++ L + + A +P + ++D + ++ Sbjct: 412 AELLEKFGGHSQAAGFSLKLETIPLLREALNQ-AALHLPEEMFYERIRVDQCVPLEVLDA 470 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 +L+ LE P+G GNP+PV A ++ L V HL+ F Q + IAFR Sbjct: 471 SLLHDLEHLAPFGFGNPSPVLAGRDYPLYMADTVGKDHAHLKCMFGPQG--EWEGIAFR- 527 Query: 549 YGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 GE L G + V L N +RG++ QL + D P Sbjct: 528 ----KGEELANILGSATVDVAFGLDWNTFRGAQSIQLMIKDIQP 567 >gi|322385654|ref|ZP_08059298.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus cristatus ATCC 51100] gi|321270392|gb|EFX53308.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus cristatus ATCC 51100] Length = 739 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W N +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQFATNFTDENFLKK-AKKAGLEPTAASLLYQRGVQNEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DIVSLTGENRILVKYGLSVLKNTQRIGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTSYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ +D + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQED-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|327470781|gb|EGF16237.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK330] Length = 740 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL P + L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPGLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEAEKLAELADILTVYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVTLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|168180830|ref|ZP_02615494.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum NCTC 2916] gi|226950176|ref|YP_002805267.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A2 str. Kyoto] gi|182668251|gb|EDT80230.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum NCTC 2916] gi|226843610|gb|ACO86276.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A2 str. Kyoto] Length = 593 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYAI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNIDKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LALKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|325695978|gb|EGD37869.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK160] Length = 740 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 273/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQFATNFTDEKFIKK-AKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELYLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QDS T + +AF Sbjct: 462 DTLKSFERLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQDS-TFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|29376242|ref|NP_815396.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis V583] gi|29343705|gb|AAO81466.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis V583] Length = 770 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + A + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLF------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 569 >gi|327461206|gb|EGF07539.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK1057] Length = 739 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 277/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVDRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + ++ V Sbjct: 291 LDDPNPAIELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDSK------RPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELADILTAYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G ++ K + + L VN W G QL ++DA F + Sbjct: 521 GGL----VTEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|304319922|ref|YP_003853565.1| single-stranded-DNA-specific exonuclease RecJ [Parvularcula bermudensis HTCC2503] gi|303298825|gb|ADM08424.1| single-stranded-DNA-specific exonuclease RecJ [Parvularcula bermudensis HTCC2503] Length = 610 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 233/601 (38%), Positives = 329/601 (54%), Gaps = 12/601 (1%) Query: 1 MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF 60 + + AFLGV S++G A I Q+ I +++ V+ R V+ D A + Sbjct: 12 LVETAFLGVTRSVTGR--RWRRRAFDARAAETIAQRLDIDPLLSEVVAARQVTPDLAAAW 69 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L+P +R +PDP L D AA R+ AI E I +FGD+DVDG S A+M R+L Sbjct: 70 LSPRLRDDLPDPSCLKGMDTAAARLADAIIAGETIGLFGDFDVDGTTSSAIMARYLRAVG 129 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 +++P+R +GYGPN +GA LI+T+DCG+T++ L A +G++VIV+D Sbjct: 130 AAPLIHLPNRQSEGYGPNLPAFLAMKEKGASLIVTLDCGATAHGVLAAAAEEGLEVIVVD 189 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDL 238 HH + A A+VNPNR D LSG L A GV FL LV + R LR+ DL Sbjct: 190 HHLMSLPAPTAVAVVNPNRPDCLSGLTMLSAGGVTFLTLVALNRTLRERGFFADRPPPDL 249 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-----QGNPGLKALIERVNISSPIT 293 L LLDLVAL+ VCDV+PL GL R +GL + GN G++AL P Sbjct: 250 LRLLDLVALSLVCDVMPLKGLGRTLTRQGLALLGHIEGAGSGNQGIRALAAEAGAKGPAA 309 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 A + GY IGP INA GRIG + LL +DD + LA +L LN R+ +E+A+LE+ Sbjct: 310 AAHFGYAIGPRINAAGRIGHAMTAFDLLTTDDPVKAAALAAELSDLNGIRQGVEAAVLEE 369 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 A K D +VV G+ WHPG++G++A RLKE+FGRP+ IS + +G GSG Sbjct: 370 A-CKAAEDQGDRDAPLPLVVAGEGWHPGVIGIVAGRLKERFGRPALVISLAGE-EGKGSG 427 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RS+ G D+G + AVE G+L+ GGGH MAAGLTV R G L F + A Sbjct: 428 RSLPGVDLGAAIGAAVEAGLLLGGGGHPMAAGLTVRRDGLGELRAFLDARLGEAIAAAQA 487 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 V +DG++ + + +L D L A P+G GNP P FA + ++ +RV+ H+ +T Sbjct: 488 DRVLSLDGIVAPTGITRSLHDGLLQAAPFGNGNPEPRFALADISVRELRVLKDKHMAVTL 547 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSR-GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + IAF G PLG+ L R G+R+H+ G + + +RG Q+ + D + V Sbjct: 548 ADDTGGRARGIAFGCVGQPLGDLLEAGRAGQRLHLAGRIKPDEYRGGNAAQIHLEDGAVV 607 Query: 593 E 593 + Sbjct: 608 K 608 >gi|224824113|ref|ZP_03697221.1| single-stranded-DNA-specific exonuclease RecJ [Lutiella nitroferrum 2002] gi|224603532|gb|EEG09707.1| single-stranded-DNA-specific exonuclease RecJ [Lutiella nitroferrum 2002] Length = 571 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 269/583 (46%), Gaps = 28/583 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + AL Q I +++R+ R ++ L+ S++ L+P L + Sbjct: 5 QTRSVPPDHHAAL---QAQGISPLMSRLFAARGITS---HAELDCSLKALLP-FQQLKNI 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 D ARR+ AI E++++ DYD DGA + ++ M+ L+ + +P+R GYG Sbjct: 58 DAMARRLADAIARRERLLVVADYDADGATACSVAMKGLAAHGAIVDFIVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E +I+TVD G S ++ A +GI+V+V DHH +P +VNPN Sbjct: 118 PEIVELAAQHRPDIIVTVDNGIASVAGVEAAKARGIEVLVTDHHLPGDT-LPDALIVNPN 176 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPL 256 + +L GV+F VL+ + +R +L LLD VAL TV DVV L Sbjct: 177 QPGCPFPSKNLAGVGVMFYVLMALRAEMRARGAFGDKPEPNLGELLDYVALGTVADVVRL 236 Query: 257 IGLNRAYVVKGLMVARRQGN-PGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGES 314 NR V GL R PG+ AL +LG+ +GP +NA GR+ + Sbjct: 237 DQNNRILVENGLRRMRAGRMTPGIAALFRVAGRMVHKANTFDLGFTLGPRLNAAGRLDDM 296 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +LG L++ + LA +LD LN+ RR +E M ++A + D + + + Sbjct: 297 SLGIACLLAATESQAMKLAQELDALNRERRQIEHGMQDEAL--AVLASIDPAERYTLALY 354 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432 D WH G+VG++A+RLKE+F RPS + ++G+ GSGRSI GF + + G Sbjct: 355 RDDWHQGVVGIVASRLKERFHRPSIVFAPGDEGEIKGSGRSIPGFHLRDALDLVSKRHPG 414 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L K GGHAMAAGLT+ V+F C F+ A + T + DG L +++ Sbjct: 415 LLRKFGGHAMAAGLTIAEVDFPAFCQAFETVAREWMSEQQLTRTLETDGSLGPRELHLGF 474 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 + L +A +G G P P F + R+V HL++ +D + A+ F Sbjct: 475 AEEL-AAQVWGQGFPPPTFCDR-FHVMQQRIVGDKHLKLRL-LKDGQEFDAMRFNQVDW- 530 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + + N W+ K Q+ + G Sbjct: 531 --------LPDEIEAVYQVVANEWQSRKELQIYLDHWQLPAGQ 565 >gi|125623467|ref|YP_001031950.1| single strand DNA-specific exonuclease [Lactococcus lactis subsp. cremoris MG1363] gi|124492275|emb|CAL97206.1| single strand DNA-specific exonuclease [Lactococcus lactis subsp. cremoris MG1363] Length = 742 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 34/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 + W L I++KH + ++ +RVL R + + + FL P++ L DP + Sbjct: 6 YDWKLDET-VLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA +RI+ AI E I+I+GDYD DG + ++M L A +Y+P+R DG Sbjct: 64 LHDMEKATQRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + + + NE LIITVD G +A+ +A G+DVI+ DHH + + AYA Sbjct: 124 YGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQMPNAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + +L GV F V + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPESQYPFKYLAGVGVAFKVACALLEYAP-----------REMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIG 312 V L NR V GL V + GL+ L+ + +T E +G+ I P +NA GR+ Sbjct: 233 VSLTDENRILVAHGLKVLAQTERAGLQELMIYAGVDFDKVTEETVGFQIAPRLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D E +A +D N R+ + + +A A + + V + Sbjct: 293 DPNPAIELLTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDE-------PVQI 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A RL E+ +P ++ EE+G GS RSI+ FDI + Sbjct: 346 LYHKDWHKGVLGIVAGRLLEQIHKPVIMLA-EEEGILRGSARSIDSFDI--FKALNAHRE 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAG+T+ N + F + L ++ + +++A Sbjct: 403 LFIAFGGHKQAAGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLDEISLAT 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 I+ L P+G NP P F ++K+ R + HL++ + ++ + + A+ F+ Sbjct: 463 INNLAKLAPFGMDNPKPRFLVEDYKVIRSRSMGKDNAHLKLKIQ-EEKQQIDAVYFQHGS 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L +++ + L N W G+ QL + DA Sbjct: 522 EELEFEQAETK-----LVVTLSSNSWNGNTSLQLMIEDA 555 >gi|55821231|ref|YP_139673.1| single strand DNA-specific exonuclease [Streptococcus thermophilus LMG 18311] gi|55737216|gb|AAV60858.1| single strand DNA-specific exonuclease [Streptococcus thermophilus LMG 18311] Length = 736 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + ++H + A++ R + + A +DFL + L DP Sbjct: 4 STYDWKINTKEPD-AGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S +++ L A +Y+P+R Sbjct: 62 YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G +A+ YA QG+DVIV DHH + S+ A Sbjct: 122 DGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P +L GV F + + + +LDLVA+ T+ Sbjct: 182 YAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 D+V L NR V GL + + GL+ L+ + + I+ E + + + P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E + +A++++ N+ R+ + + ++A + V V Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLARGSARSLESINI--FHALDDH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 I GGHA AAG+T+ N +L D + ++ +D L +++ Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTGAKNTLNLDEELQLGELSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 I LE P+G N PVF + + R + HL+ + Q + +AF Sbjct: 462 DTIRSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFN- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G L EF + + L VN W G QL + D F + Sbjct: 520 KGHLLQEFQQAQG---LELAVTLSVNVWNGQTTLQLMLADVRVDNVQLFDFR 568 >gi|148380722|ref|YP_001255263.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A str. ATCC 3502] gi|153930815|ref|YP_001385006.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A str. ATCC 19397] gi|153936524|ref|YP_001388476.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A str. Hall] gi|148290206|emb|CAL84325.1| single-stranded-DNA-specific exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152926859|gb|ABS32359.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A str. ATCC 19397] gi|152932438|gb|ABS37937.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum A str. Hall] Length = 593 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 295/605 (48%), Gaps = 45/605 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +W+ + I I K I + + VLVNR + +++ KDFL PS+ L +PL Sbjct: 2 NKKWMLRRNKLNIRD---IANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLY-NPL 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DK I ++I + +KI I+GDYD DG S ++ L C N YIPDR + Sbjct: 58 LMKDMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETE 117 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----- 188 GYG +E+ EG ++IIT D G + + ++ A G+ V++ DHH++ E Sbjct: 118 GYGMCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEE 177 Query: 189 -----IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 A A++NP + D LC AG+ F L+Y L + LL Sbjct: 178 REYVVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLQ 232 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIG 302 A+ T+CDVV L G NR GL N GL+ALI+ +++ IT+ N+G++IG Sbjct: 233 FAAIGTICDVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIG 292 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ + L L ++ D + E LA +L LN R+ + +E+ + + Sbjct: 293 PCINATGRLDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYAI--EN 350 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ V+V+ + H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ Sbjct: 351 SSLKNDKVLVIYKENIHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL- 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + + K GGH MAAGLT+E N +L + K + + P +ID Sbjct: 409 -FEELMKCKEYIYKFGGHPMAAGLTIEEKNINKLREELNKNCN--LKDEDFIPKIRIDKR 465 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 L VN+ LID L+ P+G GN +P+ A N K++ IR++ L++T +D ++ Sbjct: 466 LALKEVNLELIDSLQCLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNK 525 Query: 540 TLQAIAFRVYGTPLGEFLMQSR--------------GKRMHVTGHLCVNYWRGSKRCQLR 585 + AIAF + G ++ + + +N + G+ QLR Sbjct: 526 RIHAIAFGKVDEFKRDLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLR 585 Query: 586 VLDAS 590 ++D Sbjct: 586 IIDYR 590 >gi|55823143|ref|YP_141584.1| single strand DNA-specific exonuclease [Streptococcus thermophilus CNRZ1066] gi|55739128|gb|AAV62769.1| single strand DNA-specific exonuclease [Streptococcus thermophilus CNRZ1066] Length = 736 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + ++H + A++ R + + A +DFL + L DP Sbjct: 4 STYDWKINTKEPD-AGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI N E+I+++GDYD DG S +++ L A +Y+P+R Sbjct: 62 YLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G +A+ YA QG+DVIV DHH + S+ A Sbjct: 122 DGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQEQGVDVIVTDHHSMPSQLPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P +L GV F + + + +LDLVA+ T+ Sbjct: 182 YAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIP-----------TEMLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 D+V L NR V GL + + GL+ L+ + + I+ E + + + P +NA GR Sbjct: 231 DMVSLTDENRIMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E + +A++++ N+ R+ + + ++A + V V Sbjct: 291 LDDPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQNIFDEAMSMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + WHPG++G++A R+ E+ + ++ EDG GS RS+E +I + Sbjct: 345 QVLAKEGWHPGVLGIVAGRIMEQISQTVVVLN-IEDGLARGSARSLESINI--FHALDDH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 I GGHA AAG+T+ N +L D + ++ +D L +++ Sbjct: 402 RDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTGAKNTLNLDEELQLGELSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 I LE P+G N PVF + + R + HL+ + Q + +AF Sbjct: 462 DTIRSLEKLAPFGMDNKKPVFWLHDITVTQARTMGQNGAHLKFKVK-QGKASFDVVAFN- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G L EF + + L VN W G QL + D F + Sbjct: 520 KGHLLQEFQQAQG---LELAVTLSVNVWNGQTTLQLMLADVRVDNVQLFDFR 568 >gi|282890833|ref|ZP_06299351.1| hypothetical protein pah_c028o005 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499261|gb|EFB41562.1| hypothetical protein pah_c028o005 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 593 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 152/577 (26%), Positives = 268/577 (46%), Gaps = 15/577 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 WV QE A I ++ I +VA+V V+R + + FL + L DP ++ Sbjct: 13 WVY--PQENAELAEKIVKEFRIHPVVAQVFVSRGFTTLEQIHTFLYGRLPDLC-DPFLMG 69 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +A +RI +AI E I+I+GD DVDG AL+ F + N Y+ +R Sbjct: 70 GMPQAVQRIAKAIEQGEGILIYGDNDVDGMTGTALLTEFFRYIGANVFFYVSNRGAHRGS 129 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 +E + +L+ITVDCG T+ + IDVI+ DHH + A +N Sbjct: 130 LIVEALEYALKNECKLLITVDCGITAAGEIAKVVENNIDVIITDHHAPTDKIPNCIATLN 189 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVP 255 P +++ + GV F + + L + K+P DL LDLVAL T+ D+ Sbjct: 190 PKLVNNSYPNQDITGVGVAFKLAHAVTEHLTAEGKLPPKKVDLKRYLDLVALGTISDMGT 249 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 L G NR V GL ++ GL L+ ++ + ++ + + P +N+ GRI + Sbjct: 250 LQGENRILVSYGLHELAKRKRLGLSKLMSISDVDLNDLSTFTIASKVAPRLNSLGRIDDP 309 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 G ++L+ ++ E +A++LD+ N R+ +E AM E+K+L + + + ++ ++ Sbjct: 310 QKGVQMLLIRNAVAAEKMAIELDLNNIERQRIERAMAVDIESKLLMHPEILSKKAI-LMH 368 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WHPG++ +L+ R+ + + RP+ ++ ++ GS RSI F + ++ IL Sbjct: 369 SENWHPGVIAILSTRIAKFYNRPTVIMACDDK-VAKGSLRSIPEFPLLPVLDQC--SDIL 425 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 V GGH AAG+T++ + F + A + ++D +N + ++ Sbjct: 426 VNYGGHDFAAGVTLKLEHIEEFKRRFIEAAEATLKDSDVLTKLRLDAKINFDELTFDFME 485 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553 L+ PYG GNP PV + +V+ AHL++ + L+ IA G Sbjct: 486 SLKLLEPYGNGNPQPVLYCDAKQAFPPKVLKKAHLKLYLVQGEGDRMLEGIA---LGKAA 542 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L++ + + + +N ++G QL + D Sbjct: 543 QSPLLRKKDLVLRIAFTPQINNYQGQ-SIQLMIRDFQ 578 >gi|332360975|gb|EGJ38779.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK1056] Length = 739 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + + ++FL PS+ L DP Sbjct: 4 SKYDWHF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTKEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRIGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGH 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GNL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|322391382|ref|ZP_08064852.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus peroris ATCC 700780] gi|321145808|gb|EFX41199.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus peroris ATCC 700780] Length = 743 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 174/590 (29%), Positives = 282/590 (47%), Gaps = 32/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I + + VA +L R + + K FL PS+ L DP + Sbjct: 10 YNWQFSPQVED-ADFTKIAKSVGLSSEVACLLFQRGIKDESSLKKFLEPSLEDLH-DPYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVDRIRQAIEQGELILVYGDYDADGMTSASIVKESLEQLGAECLVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQQGVSLIVTVDNGVAGHEAIDLAQSMGVDVIVTDHHSMPEVLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPEADYPFKQLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL V R GL+ L E I +S IT E +G+ + P +NA GR+ Sbjct: 237 VSLTDENRIMVQYGLEVLRNTQRIGLQELFEIAGIATSDITEETVGFQLAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E+ +A+ + N+ R+ + A+ ++A+ V SV V Sbjct: 297 DPNPAIDLLTGFDDEEVHEIALMIQEKNEERKEIVQAIYDEAKNMV------DPSKSVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RSIE DI + Sbjct: 351 LSKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSIEAVDI--FEALDPHRA 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + + + +D L+ +N+ Sbjct: 408 LFIAFGGHAGAAGMTLEAEQLDALSEILETYVKDKGIDAKCKSQLYLDEELDLENLNLDT 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYG 550 + E P+G N P+F ++++ R + +HL++ S+ + + + +AF Sbjct: 468 VKSFERLAPFGMDNQKPIFYIRYFQVENARSMGAGDSHLKLRI-SKGTASFEVVAFGQG- 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + ++ K++ + L VN W G QL ++DA F + Sbjct: 526 ---SKATEFAQTKQLELAVTLSVNQWNGQTTLQLMMVDARVDGVQLFNIR 572 >gi|294617211|ref|ZP_06696861.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1679] gi|291596524|gb|EFF27767.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium E1679] Length = 751 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 172/581 (29%), Positives = 269/581 (46%), Gaps = 45/581 (7%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN S+ ++ I EG QLIITVD G DA+ YA G+DVI+ DHH++ AYA Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGNDAVAYAQQAGVDVIITDHHELPENLPDAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P L GV F V + LDLVA+ T+ D+ Sbjct: 183 IVHPRHPAGHYPFPDLAGVGVAFKVASALLEE-----------PPAEFLDLVAIGTIADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIG 312 V L NR V G+ GL+AL E + E +G+ I P +NA GR+G Sbjct: 232 VSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADETTIGFSIAPRLNAIGRMG 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL + D +E + A KL+ +N+ R+ + + ++A A V + + + Sbjct: 292 DPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEALAMVNKEN------HIHL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A ++ + G+P+ ++ +EDG GSGRSIE ++ Sbjct: 346 LVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRSIEALNL--FEMLDQMRD 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GLT+ N L + ++ + L+ P +ID Sbjct: 404 LFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGPELRID------------ 451 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 L+ P+G NP P F F + ++I+ + HL+ S+ L A+AF +G Sbjct: 452 --ELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVLSDASSQ-LDAVAFG-FG 507 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T E L ++ V G L +N W G K+ QL V D S Sbjct: 508 TQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 544 >gi|332367016|gb|EGJ44756.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK1059] Length = 739 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 277/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGVSLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VEFLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E+ +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAIELLTGFDDEEVRDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D ++ + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELADILTEYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ +D + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQED-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K M + L VN W G QL ++DA F + Sbjct: 521 GNL----ATEFAQTKNMELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|270160144|ref|ZP_06188800.1| single-stranded-DNA-specific exonuclease RecJ [Legionella longbeachae D-4968] gi|289165080|ref|YP_003455218.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella longbeachae NSW150] gi|269988483|gb|EEZ94738.1| single-stranded-DNA-specific exonuclease RecJ [Legionella longbeachae D-4968] gi|288858253|emb|CBJ12121.1| Single-stranded-DNA-specific exonuclease RecJ [Legionella longbeachae NSW150] Length = 584 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P+++ R+ +R ++ L+ ++ L+P L D A R+ +A++ ++I+I Sbjct: 17 NVPEVLNRIYASRGITE---ISQLDKQLQALLP-FDTLKGIDSACLRLEKALHEQQRIII 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + +P+R GYG P +++ LIITV Sbjct: 73 IGDFDADGATSTALAITALRAMGARFIDYLVPNRFEFGYGLTPQIVDVASKWKPSLIITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S++ ++ A GIDV++ DHH A A+VNPN+ + GV+F Sbjct: 133 DNGIASFEGVERANQLGIDVLITDHHLSAESIPNACAIVNPNQPGCQFPSKSIAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + R L N ++ S LDLVAL TV DVV L NR V +G+ R Sbjct: 193 YVMLALRRHLVNANWFQKMDIAEPNMASFLDLVALGTVADVVGLDQNNRIMVNQGMARIR 252 Query: 273 RQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G G+KALIE + +LG+ I P +NA GR+ + LG LIS D Q+ Sbjct: 253 QGLGRVGIKALIEVSGREYARLRESDLGFAIAPRLNAAGRLDDMALGIECLISTDEQQAR 312 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-----VVEGDRWHPGIVGL 385 +LD LN+ R+ +E M EQA + D S + WH G++G+ Sbjct: 313 NYCQQLDELNEERKQIEIEMKEQALLVLEKLALDADYNSTHLPIALCLFDKTWHQGVIGI 372 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMA 443 LA R+KE++ RP A + D + GS RSI +I +++ G++ K GGHAMA Sbjct: 373 LAGRMKERYHRPVIAFAAVSDDELKGSARSISDLNIRDVLAAIDKDYPGLIKKFGGHAMA 432 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 AGL++ + F + DG L + + + + +++ AGP+G Sbjct: 433 AGLSIHPDSLKAFRAAFVLEVGRHIDLSQCEGEILTDGPLQPNELTLEIAQLIQQAGPWG 492 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 PVF ++ R+V HL+MT E+Q + + AIAF + R Sbjct: 493 QQFAEPVFD-NIFEVLEQRLVGKNHLKMTLIETQSKQQVDAIAFNIDLKSWP----NHRV 547 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVL 587 K +H L +N+++G R QL + Sbjct: 548 KYIHAAYKLDINFFQGRTRLQLLIQ 572 >gi|332362085|gb|EGJ39887.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK49] Length = 739 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 174/592 (29%), Positives = 273/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W N +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQFATNFTDENFLKK-AKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENHGISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAVGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLEELSDILTAYISDNDLDLTGKTALYLDEELYLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ D T + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQGD-ATFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|312128185|ref|YP_003993059.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor hydrothermalis 108] gi|311778204|gb|ADQ07690.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor hydrothermalis 108] Length = 798 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 176/577 (30%), Positives = 296/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW+ N + I + I + +VL NR V + + FLNPS++ L +P + Sbjct: 6 KRWILKDNNNIENMDIEIDGR-KIKPQIIKVLNNRGVQEKEEIERFLNPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + I QAI + +++I+GDYD DG S L+ L + + YIP+R DG Sbjct: 64 LPDMKEAVKIINQAILHKNRVLIYGDYDCDGVTSTYLLYSALRNF-LPTTYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + L+ITVD G +S++ ++Y +G +VI+ DHH+ K A A+ Sbjct: 123 YGLNLDVLKK-LEGKFDLLITVDTGISSHNEVKYLKEKGKEVIITDHHEPKEVLPDADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D L GV F +L + +N L LD+VA+ T+ DV+ Sbjct: 182 INPKRKDSTYPFRDLAGVGVAFKLLHAL-------KNSGVNLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR + GL V + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRIFAKFGLKVLKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ D + E +A KLD N+ R+ +E +++A+ + + I + + V Sbjct: 295 DANLAVSLLLEQDVIKAESIAKKLDEENRKRQEIEEKTIKEAQGLI-AKNKSILKKKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ ++G GSGRSI+GF++ + + E Sbjct: 354 LSNSSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAE-- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P ++D VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + ++ Q ++D Sbjct: 527 LEDEDELISMKKVDIVCKLEKNLFNSVRKNQFNIIDI 563 >gi|110596823|ref|ZP_01385113.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium ferrooxidans DSM 13031] gi|110341510|gb|EAT59970.1| single-stranded-DNA-specific exonuclease RecJ [Chlorobium ferrooxidans DSM 13031] Length = 572 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 165/578 (28%), Positives = 261/578 (45%), Gaps = 19/578 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +RW L A+T+ + VAR L NR V+ D A+D+ SI +P P + Sbjct: 4 YRWNLLA--PDDETVQALTEAINVSQPVARALCNRGVTTFDAARDYFRSSIEH-IPSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + +A R+++A+ EKIMI+GDYDVDG A++ FL YI DR +G Sbjct: 61 MQQMQRAVDRVLEAVRMHEKIMIYGDYDVDGTTGTAMLFLFLKEQGAEVTWYINDRFTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ + L+ITVDCG + ++ GIDVIV DHH+ E AYA+ Sbjct: 121 YGLSAEGIDTALGRQVSLVITVDCGIRANREIKRCGELGIDVIVCDHHE-PDELPTAYAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV F +L I D+ LD VA+AT D+V Sbjct: 180 LNPKVPGSTYPFRELCGCGVAFKLLQAIAGDSGADD-----ESWQKYLDFVAIATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + KAL + + SS + ++ + I P INA GR+G Sbjct: 235 ALEQENRTLVREGLKRMRVKPRGTFKALFSLMKVASSELGMFHIAFGIAPRINAAGRMGS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++L L+S+ + A +LD +N RR ++S ++ +AE V + S IV+ Sbjct: 295 AHLAMEWLVSESMDDSVRHAGELDRMNALRREIDSDIMTKAEKMVESHFASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+++ EK P+ + G GS RSIEGF+I + + Sbjct: 353 YDESWHLGVLGIVASKMLEKHYLPTVILGSMN-GFIKGSVRSIEGFNIYEALQEC--SAY 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG+ + N F + + +D +L + I Sbjct: 410 LEQFGGHHQAAGVILRPENLAGFRKKFNEVCAASLSIEQQQKALAVDALLPLEEITPNFI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++L P G GN P+F +L R+++ H++ + I F Sbjct: 470 NVLAQFAPLGYGNREPLFMSRELQLFGTPRLLSKRHVKFSVRDSAGRIFDVIGFDRPD-- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L + + W ++ Q+R+ D Sbjct: 528 IFDQLSTQTRPVFVMLYSVEKRMWNNREQIQIRLRDLE 565 >gi|88797974|ref|ZP_01113561.1| single-stranded-DNA-specific exonuclease RecJ [Reinekea sp. MED297] gi|88779171|gb|EAR10359.1| single-stranded-DNA-specific exonuclease RecJ [Reinekea sp. MED297] Length = 573 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 177/566 (31%), Positives = 282/566 (49%), Gaps = 17/566 (3%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 A ++++ +V R+ R V+ L PS+R L+ D +L +A Sbjct: 14 DIRTRPAHSLSKSLHPNPLVDRLYRARQVTDPQE---LEPSLRHLV-DYRLLKGLTEAVS 69 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 + +A ++++ GDYD DGA S AL + L ++ + +P+R GYG + +++ Sbjct: 70 LLNRARSERWRVLVVGDYDTDGATSTALAVLGLQSFGLDVDYLLPNRFEYGYGLSAEIVD 129 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + LI+TVD G S + ++ A G+ V+V DHH +E A A+VNPN+ D Sbjct: 130 LALTRQPDLIVTVDNGIASIEGVERANAAGVKVLVTDHHLAGAELPQAAAIVNPNQPDCA 189 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 C V++ VL+ + LR + P +L LDLVALATV DVVPL NR Sbjct: 190 FPSKAACGCTVLYYVLIALRAELRAQGQ-PDLPNLGQWLDLVALATVADVVPLDENNRRL 248 Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V GL R Q PG++AL E A + G++IGP +NA GR+ + +G +LL Sbjct: 249 VTHGLNRVRAGQCRPGIRALFEVAGRQWQEAKASDFGFVIGPRLNAAGRLDDMTIGVQLL 308 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 +++ E LA +L LN RR +E +M+ + ++ + VV G+ WH G Sbjct: 309 LAESDDEARSLASELHALNTERRQIEQSMVADVSKSLPDLSRTDKRCGI-VVTGNDWHEG 367 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439 ++G++A+R+K++ +P A + ++G+ GS RS+ G + + + EG+++K GG Sbjct: 368 VIGIVASRVKDRIHKPVVAFAAGDNGQWKGSARSVPGVHMRDALDWVAKKSEGVVLKFGG 427 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGLT+ D F + + + TP DG L+ S + + LE A Sbjct: 428 HAMAAGLTIAADRSDEFADLFDQAVQALAESEALTPHLWCDGALSDSELTLDNALALEQA 487 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 GP+G P P+F ++ RV+ HL+MT + E AIAF V + ++ Sbjct: 488 GPWGQAFPEPLFYGE-FQISDRRVLADRHLKMTLQQGAGE-WPAIAFNVEPS-----ILN 540 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLR 585 + R+H L VN +RG QL Sbjct: 541 ASATRVHGLYQLSVNRFRGQVSVQLI 566 >gi|313890116|ref|ZP_07823751.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pseudoporcinus SPIN 20026] gi|313121477|gb|EFR44581.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pseudoporcinus SPIN 20026] Length = 734 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 170/591 (28%), Positives = 278/591 (47%), Gaps = 34/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 ++W + + + +K + A++L R + + + FL+ + L DP + Sbjct: 6 YQWEIQEEKPD-SGFFQLAKKEGLSPESAQILYERGIQTPEQVGAFLHADLSQLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA RI AI E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMEKAVTRIRLAIEKGETILVYGDYDADGMTSASIMKETLEMMGAEVRVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G + ++A+ +A QG+DVIV DHH + A+A Sbjct: 124 YGPNLSVYKYFIQQEAISLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHGLPDTLPEAFA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F + + + LDLVA+ TV D+ Sbjct: 184 IIHPEHPDADYPFKYLAGCGVAFKLATALLEGVP-----------AEFLDLVAIGTVADM 232 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIG 312 V L G NR V GL + R+ GL+ L+ ++ E+ +G+ I P +NA GR+ Sbjct: 233 VSLQGENRILVKNGLSILRQTERLGLQELMALADVDLDQFNEDVIGFKIAPQLNALGRLD 292 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A +++ N+ R+ + + ++A V V V Sbjct: 293 DPNPAIDLLTGFDEEEALAIAELVNLKNEERKTLVQTIYDEALQMVDL------SKPVQV 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + WHPG++G++A R+ E+ + ++ EDG GS RSI+ +I + + Sbjct: 347 LAKEGWHPGVLGIVAGRIMEEISQTVIVLN-CEDGYAKGSARSIDAINI--FEALNAKRE 403 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ GGHA AAG+T+ N L +F +D +L+ ++I L Sbjct: 404 LMTAFGGHAGAAGMTLPVDNLDALSQALSEFIEENQIDCNQKNSLTVDAILDLEHLSIDL 463 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + L+S GP+G GNP PVF + +L R + AHL++ + T +AF Sbjct: 464 LRSLQSIGPFGMGNPKPVFLVKDFQLGQARTLGSHNAHLKLRLQKGPVAT-DLLAFNQ-- 520 Query: 551 TPLGEFLMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G L + R + + L VN W G QL ++DA + Sbjct: 521 ---GHLLQDFQQARGLELLVTLSVNSWNGKTTLQLILVDARVTGLQLIDIR 568 >gi|15895500|ref|NP_348849.1| ssDNA exonuclease, RecJ [Clostridium acetobutylicum ATCC 824] gi|15025231|gb|AAK80189.1|AE007723_7 SsDNA Exonuclease, RecJ [Clostridium acetobutylicum ATCC 824] gi|325509647|gb|ADZ21283.1| SsDNA Exonuclease, RecJ [Clostridium acetobutylicum EA 2018] Length = 587 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 173/601 (28%), Positives = 278/601 (46%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 +W + AI + I +++ ++L+NR + FLNP M +P + Sbjct: 3 KWFMKNIKADY---KAIAKAFGISEVIGKLLINRGIKDVKLIDSFLNPRFEK-MHNPKDM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +A+ + I + ++I I GDYDVDG S L+ L C + + IPDR+ DGY Sbjct: 59 KDLKRASEILKSKIDSGKRIRIIGDYDVDGVISTYLLFTALKRCGADVDYDIPDRVKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI------ 189 G N ++EK I + IIT D G + + + YA + VIV DHH + E Sbjct: 119 GINIHIIEKCIEDSVDTIITCDNGIAAIEPINYAKECKLTVIVTDHHDIPFIEEENGQRS 178 Query: 190 ----PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A A++NP + + LC AGVVF ++ ++Y D + L V Sbjct: 179 FISSNADAIINPKQKECKYPFKGLCGAGVVFKLIEVLY-----DEFKIHKKEFYGLSQFV 233 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPS 304 A+ATVCDVV L+ NR V GL + N GL++LI + NI I+ +LG++IGP Sbjct: 234 AIATVCDVVDLVDENRILVKNGLKLLNETRNVGLRSLIRQTNIEDKKISTYHLGFVIGPC 293 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + G LLIS++ E L+ +L N R+ M ++ A + + + Sbjct: 294 INATGRLDSAKRGIELLISENEDEASRLSKELFDFNNERKEMTQKGVDTAIDLI--ENTE 351 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ V V+ H IVG++A R++EK+ P+ ++ E+G GSGRSIEG+++ Sbjct: 352 MKNHRVFVIYVPEIHESIVGIVAGRIREKYNVPTIVLTKTENG-AKGSGRSIEGYNM--F 408 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + IL+K GGH MAAGL++E N L + + + + A P +D + Sbjct: 409 EELIKCKDILLKFGGHPMAAGLSLEIENIDCLRERLNE--NTTLSAEDLIPKITLDMGMP 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 +N + L P+G NP P+F K+ S R++ H L++ F S++ + Sbjct: 467 LEYINYDFVKELNMLEPFGKSNPKPMFGEKKAKVVSARIIGKNHNVLKLKFLSKNRRYID 526 Query: 543 AIAFRVYGTPLGEFLMQS-------------RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 I F + + + + +N + G Q+ V Sbjct: 527 GIYFGDIEEFEKIVINNYGSEQMNKMYSGIENNIYLDIAFYPDINEYNGKVNIQIIVQHF 586 Query: 590 S 590 Sbjct: 587 R 587 >gi|327543023|gb|EGF29469.1| single-stranded-DNA-specific exonuclease RecJ [Rhodopirellula baltica WH47] Length = 599 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 161/588 (27%), Positives = 268/588 (45%), Gaps = 17/588 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S + W + + +P +VA++LV+R V S + A FL+ + L Sbjct: 17 SGTKREWRITPHDA--PLVEQLIRTTGLPPVVAQLLVSRGVYSQEDAATFLDTKLTSLR- 73 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP +L A +I+ A I+I+GDYD DG A+++ L + ++P+R Sbjct: 74 DPQLLPGVPAATEKILAAAEAKTPIVIYGDYDADGMTGSAILVNCLRLIGAEVSYHVPNR 133 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N + K + G Q+II+VDCG S + G+ +I+ DHHQ+ E Sbjct: 134 LEEGYGLNEDSIRKLVARGKQMIISVDCGIASLQCAKLCRELGVTLIITDHHQIGDELPD 193 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR-ILRQDNKVPLNF-DLLSLLDLVALA 248 A +V+P G LC AGV F + + + Q P L+ L L A+ Sbjct: 194 ADIIVHPRLPGTAYPFGELCGAGVAFKLAWSLCQAKCGQKKVTPPMKRFLMQSLSLAAIG 253 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSIN 306 T+ DVVPL+ NR V GL V + + PGL L++ + +T EN+ + + P +N Sbjct: 254 TIADVVPLLDENRVLVNHGLRVMQTEPLPGLWELMKLTKLDQASELTTENISFGLAPRLN 313 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+G++ LG LL + LA +D LN R ++ ++ A+ + + D + Sbjct: 314 AAGRLGQAQLGIELLTIEAGDRAVALAQYIDQLNGTRDTLQRSVQLAAQKQAKSD-FDPE 372 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-EGFDIGKMV 425 +V+ G WH G++G++A RL EK+ +P +S + GK +G G I Sbjct: 373 NDPALVLAGVGWHTGVIGVVAGRLAEKYAKPVIILSLDTAGKVDATGSGRVGGTGINLYE 432 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + E LV+ GGH A GLT+ + F + P +ID Sbjct: 433 ALRECEDRLVRYGGHPAAGGLTIRESDIEAFRGDFCEAVSKQWSEQELAPAIQIDAEAPL 492 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQ 542 +N+ + +E+ P+GAGNP PV + +L + + HL + + Q ++ Sbjct: 493 GQLNLQTMKQIETMAPFGAGNPRPVLMGRDIELNEPAKKMGKGENHLSVRLK-QGERVIR 551 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AF E L Q G + + +N + G + ++ ++D Sbjct: 552 GVAFGAAD--WCEPLNQHNG-PIEIAYRPVINEFNGYRSVEVHLVDWR 596 >gi|32475516|ref|NP_868510.1| single-strand DNA-specific exonuclease [Rhodopirellula baltica SH 1] gi|32446058|emb|CAD75887.1| single-strand DNA-specific exonuclease [Rhodopirellula baltica SH 1] Length = 599 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 161/588 (27%), Positives = 268/588 (45%), Gaps = 17/588 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S + W + + +P +VA++LV+R V S + A FL+ + L Sbjct: 17 SGTKREWRITPHDA--PLVEQLIRTTGLPPVVAQLLVSRGVYSQEDAATFLDTKLTSLR- 73 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP +L A +I+ A I+I+GDYD DG A+++ L + ++P+R Sbjct: 74 DPQLLPGVPAATEKILAAAEAKTPIVIYGDYDADGMTGSAILVNCLRLIGAEVSYHVPNR 133 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N + K + G Q+II+VDCG S + G+ +I+ DHHQ+ E Sbjct: 134 LEEGYGLNEDSIRKLVARGKQMIISVDCGIASLQCAKLCRELGVTLIITDHHQIGDELPD 193 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR-ILRQDNKVPLNF-DLLSLLDLVALA 248 A +V+P G LC AGV F + + + Q P L+ L L A+ Sbjct: 194 ADIIVHPRLPGTAYPFGELCGAGVAFKLAWSLCQAKCGQKKVTPPMKRFLMQSLSLAAIG 253 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSIN 306 T+ DVVPL+ NR V GL V + + PGL L++ + +T EN+ + + P +N Sbjct: 254 TIADVVPLLDENRVLVNHGLRVMQTEPLPGLWELMKLTKLDQASELTTENISFGLAPRLN 313 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+G++ LG LL + LA +D LN R ++ ++ A+ + + D + Sbjct: 314 AAGRLGQAQLGIELLTIEAGDRAVALAQYIDQLNGTRDTLQRSVQLAAQKQAKSD-FDPE 372 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-EGFDIGKMV 425 +V+ G WH G++G++A RL EK+ +P +S + GK +G G I Sbjct: 373 NDPALVLAGVGWHTGVIGVVAGRLAEKYAKPVIILSLDTAGKVDATGSGRVGGTGINLYE 432 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + E LV+ GGH A GLT+ + F + P +ID Sbjct: 433 ALRECEDRLVRYGGHPAAGGLTIRESDIEAFRGDFCEAVSKQWSEQELAPAIQIDAEAPL 492 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQ 542 +N+ + +E+ P+GAGNP PV + +L + + HL + + Q ++ Sbjct: 493 GQLNLQTMKQIETMAPFGAGNPRPVLMGRDIELNEPAKKMGKGENHLSVRLK-QGERVIR 551 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AF E L Q G + + +N + G + ++ ++D Sbjct: 552 GVAFGAAD--WCEPLNQHNG-PIEIAYRPVINEFNGYRSVEVHLVDWR 596 >gi|315222674|ref|ZP_07864563.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus anginosus F0211] gi|315188360|gb|EFU22086.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus anginosus F0211] Length = 744 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W +K + VA ++ R + + A +DFL PS+ L DP Sbjct: 4 SKYDWQIATNFSDEGFIKK-AKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI QAI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YELHDMDKAVTRIRQAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LI+TVD G ++A++ A + G+DVIV DHH + A Sbjct: 122 DGYGPNASVYKYFIENQGVSLIVTVDNGVAGHEAIELAQSMGVDVIVTDHHSMPEVLPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P + HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIIHPEHPEADYPFQHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 D+V L NR V GL + + GL+ L + S + E +G+ I P +NA GR Sbjct: 231 DMVSLTDENRILVKYGLSILKNTQRIGLQELFKIAGIQSDELNEETVGFQIAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N+ R+ + + ++A+ V V Sbjct: 291 LDDPNPAIELLTGFDEEEARDIALMINQKNEERKEIVQKIYDEAKTMV------DPNKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G W+PG++G++A RL E+ +P ++ E+ GS RSIE DI + Sbjct: 345 QVLAGKGWNPGVLGIVAGRLLEELHQPVIVLN-IENDLAKGSARSIEAVDI--FEALDPH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L + + L T +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNQVDLSTKNELFLDEELSLPDLTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N PVF + K+++ R + HL++ D + +AF + Sbjct: 462 ETLKNFEKLAPFGMDNKKPVFYLKDFKVENARTMGAGNTHLKLKVSQAD-AVFEVVAFGL 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S+ K + + L VN W G QL ++DA F + Sbjct: 521 GDL----ATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVNGIQLFNIR 568 >gi|91202780|emb|CAJ72419.1| similar to exonuclease RecJ [Candidatus Kuenenia stuttgartiensis] Length = 577 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 180/582 (30%), Positives = 291/582 (50%), Gaps = 18/582 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW I I I +++A++L+NR ++ AK FL P I L DP Sbjct: 3 KRWFIAP--NNIELQTEIAGNLRISNLLAQILINRGITDVGAAKGFLQPQISTL-SDPSN 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA+ RI +AI N EKI+I+GDYDVDG + ALM R L N YIP+R+ +G Sbjct: 60 LPDIEKASVRINEAIRNGEKIVIYGDYDVDGLTATALMYRCLKMFDARVNYYIPERLEEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + K G LI+TVDCG ++ + A + GI++I+ DHHQ E A+A+ Sbjct: 120 YGLNAEAIAKLKAGGTDLILTVDCGISACREAEIARSYGIELIITDHHQPSQEIPDAFAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVCD 252 +NP G+ F++ + + ++ L+S + LVAL T+ D Sbjct: 180 INPKLKATEKTFRDFSGVGIAFMLAWSVGQHYFPQKKVSNEFKDFLISAMGLVALGTIAD 239 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VVPL+G NR GL ++ PGL+AL+E + + + ++GY +GP INA GR+ Sbjct: 240 VVPLVGENRILTKYGLGALQQTKIPGLQALLEVSSLTNINLDTSHVGYRLGPRINAPGRV 299 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ + +L + +++ + +A+ L+ N RR M+ +L A K++ + + + ++ Sbjct: 300 SDAGVVVEMLTTACNEKAKEIALFLEEENNRRRAMQLDILSAARQKIVDEINLDETLAI- 358 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WHPGIVG++A+++ E+F RP+ I+ ++ G GS RSI F + + + Sbjct: 359 VLADQEWHPGIVGIIASKIAEEFNRPAVMIAVADE-IGHGSARSIPSFHMLDALECC--K 415 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+ GGHA AAGL + N G + + P ID ++ S +N Sbjct: 416 NMLISVGGHAQAAGLKIHPDNIGDFRTLLNRMMAQKLQKEDLVPFLNIDVAVDLSTLNRG 475 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L+ L+ P+G GN PVFA + ++ R + HL + Q + +++AI F + Sbjct: 476 LLMELQLLSPHGEGNHIPVFAIKDLQIAGKPRRIGSNGQHLSFYVK-QGNVSMKAIGFGM 534 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L G + L N W + +L V D Sbjct: 535 GD-EIDRLLKN--GSTCSLAVVLKENNWMNNSSIELEVKDIK 573 >gi|254785317|ref|YP_003072746.1| single-stranded-DNA-specific exonuclease RecJ [Teredinibacter turnerae T7901] gi|237685191|gb|ACR12455.1| single-stranded-DNA-specific exonuclease RecJ [Teredinibacter turnerae T7901] Length = 580 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 266/564 (47%), Gaps = 21/564 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ RVL +R ++ D+ + L+ P + + A + + ++ I GD Sbjct: 26 PLLQRVLSSRGITHPQQLDY---QLANLLK-PGAMRGLEAAVALLADILTRGGRVCILGD 81 Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL +R L + +P+R GYG P ++E L+ITVD G Sbjct: 82 FDADGATSTALAVRCLRAFGCQHVDFLVPNRFEFGYGLTPEIVEVVKTLAPDLLITVDNG 141 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 S D + A G+ V+V DHH A +VNPN+L +L GV+F V+ Sbjct: 142 IASLDGVAAAQAYGMQVLVTDHHLPGEILPSAEVIVNPNQLHCDFASKNLAGVGVIFYVM 201 Query: 220 VLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 + LR ++ LDLVAL TV DVVPL NR V +GL R + Sbjct: 202 NGLRAHLRAQGWFARKGLQEPNMAQFLDLVALGTVADVVPLDSNNRTLVAQGLNRIRAGR 261 Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 G++AL E + + A +LG++ GP +NA GR+ + +LG R L++D E LA Sbjct: 262 CCAGIRALFEIGRRPLARLQASDLGFVAGPRLNAAGRLDDMSLGIRCLLADSESEARELA 321 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKE 392 +LD LN+ RR +E +M +A + + + I + + WH G++G+LA+R+K+ Sbjct: 322 AELDELNRERRSIEQSMQREALLHLDKLLAAERDWPLAICLYQEDWHQGVIGILASRIKD 381 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 + RP+ + +D GSGRSI G + ++ G+L K GGHAMAAGL++ + Sbjct: 382 RAHRPTIVFAEADDATLKGSGRSIPGIHLRDLLDAVATRHPGLLTKFGGHAMAAGLSLAK 441 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 + R + ++ DG L A ++A+ L GP+G P P Sbjct: 442 RDLDRFRLALVEETSRLLEGEAPAAEILTDGELQAEDFSLAVARSLAELGPWGQAFPEPC 501 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQD--SETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ + R+V HL++ D L AIAF V + S + + + Sbjct: 502 FDGK-FRVVNQRIVGEKHLKLVVTPGDYSGLVLDAIAFNVDLNVWPD----SSIQWVELV 556 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN +RG + QL V +P+ Sbjct: 557 YQLNVNEFRGEESLQLMVEQITPL 580 >gi|307152954|ref|YP_003888338.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7822] gi|306983182|gb|ADN15063.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7822] Length = 654 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 169/593 (28%), Positives = 286/593 (48%), Gaps = 21/593 (3%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 + RW+ I + + + I+A+VL+NR ++ A+ +L P LL+P Sbjct: 3 LPNQRWLISSSAPEI--VEQLVETTGLLPIMAQVLINREINTPELAQVYLEPE-SLLLPS 59 Query: 72 P-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P +D + + +AI + +KI I GDYD DG S AL++R L H + + IP R Sbjct: 60 PLEEFSDLAVSVELLEEAISSGDKIAICGDYDADGMTSTALLLRALRHLGADVDYAIPSR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N ++E F G LI+TVD G ++Y+ + A + G+ VI+ DHH + + P Sbjct: 120 MKEGYGINTRIVEDFAKSGVGLILTVDNGISAYEPIARAIDLGLSVIITDHHDLPEKLPP 179 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP L S L GV +++ V + + + LL+L L T+ Sbjct: 180 ADAILNPKLLPSSSPYRGLAGVGVAYILAVTTAQNMGLLKGLT-----DQLLELFTLGTI 234 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINA 307 D+ PLIG+NR ++ +GL + G++ALI+ + +++G+ +GP INA Sbjct: 235 ADLAPLIGVNRRWLKRGLRKLPKSQLAGVQALIQMSGVSDEQKELKPDDIGFRLGPRINA 294 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ + LL ++D AM+ + +NQ R+ + S + E+A + T + QQ Sbjct: 295 VGRIGDPQVVIELLTTEDEGLALERAMQCEQINQKRQQLCSKIEEEAVNLIETIPINWQQ 354 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+++ WH G++G++A+RL E++G P F ++EE+ G + + + Sbjct: 355 DRVLIIVQPHWHHGVIGIVASRLVERYGAPVFIGTYEEEEPDKIRGSARGIEEFHVFEAL 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 +L K GGH A G + N FAH + P+ KID + + Sbjct: 415 EFCHDLLGKYGGHKAAGGFSFPAKNLEAFKQRLSTFAHQCLKPEFLKPLVKIDAQADFNQ 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +N L ++ P+G GN P+F PN ++ +VV HL++ +D ++AIA+R Sbjct: 475 LNPYLYGQIDGLQPWGIGNDFPIFWTPNVRVIEQKVVGQKHLKLILAQEDGTEIKAIAWR 534 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAK 599 + V L N+W G+ +L ++ PV K Sbjct: 535 WSQYF-------PLPMCLDVAYKLKENHWNGNTNIELELVGVRVPVAAQATKK 580 >gi|261492651|ref|ZP_05989204.1| recombination protein J [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494600|ref|ZP_05991081.1| recombination protein J [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309712|gb|EEY10934.1| recombination protein J [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311810|gb|EEY12960.1| recombination protein J [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 573 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 172/561 (30%), Positives = 268/561 (47%), Gaps = 20/561 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R + L +++ L P L + ++A ++QA +I+I GD Sbjct: 20 PLLNRIYQSRGIKNTQE---LEHNLKNLHR-PQQLANIEQAVDLLLQAFREKSRIIIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S +L + L + + IPDR GYG + ++ E + +GA L++TVD G Sbjct: 76 FDADGATSTSLALIALRQLGFDKVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S + + + I V+V DHH A ALVNPN L GV+F V+ Sbjct: 136 ISSTEGIALLKSHQIQVLVTDHHLPPESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVM 195 Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + +R+ + + LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 MALRSRMREQHLFENKPEPNFAELLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCR 255 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 G+KAL E S + A +LG+ I P +NA GR+ +LG LLI ++ + LA+ Sbjct: 256 LGIKALAEVGKRDLSTLQAADLGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALD 315 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ E M +A + +QA IV+ WH G++G+LA+R+K++ Sbjct: 316 LDSLNQTRKEFEQEMKAEALSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQ 375 Query: 394 FGRPSFAISF--EEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 F RP A + EE GS RSI G + ++ ++ K GGHAMAAGLT+ Sbjct: 376 FNRPVIAFAQESEESEYLKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIH 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F + + I+ + DG LNA +A +M+ GP+G P P Sbjct: 436 QSKLDLFKQIFDQSINAIIEPEQLQGIIYTDGELNAQEFTLANAEMIRQGGPWGQHFPEP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F + +++ HL++ +S+ + AI F V + + K+ + Sbjct: 496 SFEGE-FSILQQKLLAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSI----KKARLVY 550 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L +N +RG K QL+V Sbjct: 551 RLDINEFRGEKSLQLKVEYLK 571 >gi|78043570|ref|YP_361037.1| single-stranded DNA-specific exonuclease RecJ [Carboxydothermus hydrogenoformans Z-2901] gi|77995685|gb|ABB14584.1| single-stranded DNA-specific exonuclease RecJ [Carboxydothermus hydrogenoformans Z-2901] Length = 854 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 169/589 (28%), Positives = 290/589 (49%), Gaps = 21/589 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ + + I + A++LVNR + + F +I P + Sbjct: 4 KNWLIFETSHLGEK--YLEDFFRIEPLTAKMLVNRGIFHPRGVRRFFWGNIDDTY-SPYL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +KA + I+ N+EK +I+GDYD DG S AL+ FL N + YIP+R+ +G Sbjct: 61 LKDMEKAVKLILSG-RNTEKFLIYGDYDADGLTSTALLYDFLRKRGFNVDWYIPNRLDEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + K + EG II+VDCG T+ D ++ G V++ DHH+ + E A A+ Sbjct: 120 YGLHLPPLVKALEEGISFIISVDCGITAVDEVKTVREMGAKVVITDHHEPQEEIPVAEAV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + D L GV +++ + L + L LDL + T+ D+V Sbjct: 180 INPKQKDCPYPFKGLAGVGVALKLVLALGMALGERE----EDILDQYLDLFTVGTIADIV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL+ NR +V++GL G PGLKAL E ++ IT ++G+++ P +NA GR+ + Sbjct: 236 PLVDENRIFVIEGLKRLAATGRPGLKALKEVAQLNREEITTRDVGFILSPRLNAAGRLKD 295 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L LLI ++ + LA +L NQNR+ +E+ + + A + + D+ + ++++ Sbjct: 296 PALAFELLIEENYERALALAYRLSEENQNRQGIEAEIFKAAVETIEREV-DLDREKILII 354 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 GD WHPG++G++A++L EK+ RP ISF+ + +G GSGRS+ GF++ + + + Sbjct: 355 GGDGWHPGVIGIVASKLMEKYYRPVILISFDGE-EGKGSGRSVFGFNLFEALKAV--KDY 411 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH A G+ V + F + +A +P + P +++ V+ + +N+ + Sbjct: 412 LTHFGGHERAVGVGVLKSRFLEFKEALLAYAEKHLPDELLLPKIEVEEVVGENDLNLKIS 471 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551 D + P+G NP P+F +++ + V HL+ + + E +IAF Sbjct: 472 DEIALFAPFGEQNPEPLFLIKGGQIRGAQAVGKNGNHLKFNVKL-NREIFSSIAFSKGDY 530 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + + N + G QL V + +P EG F K Sbjct: 531 ----LEFVYQQNEVDLAFIPKPNRFNGKTELQLNVKEIAPGEGRIFKVK 575 >gi|315156160|gb|EFU00177.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis TX0043] Length = 770 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 285/592 (48%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S ++W E + +K I ++ ++L +RN+ + + + FL+P+I + DP Sbjct: 4 SNYQWQLQTKTELPVEFIEQLKKEQINPLIGQLLWHRNIRTKEALRKFLHPTIEDIY-DP 62 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V Sbjct: 63 FLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFV 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AY Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPGAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P G L GV F V + L LLDLVA+ T+ D Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR +V GL + + GL L++ + ++ E++G+ IGP +N GR+ Sbjct: 232 LVSLTDENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNVLGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE+ G L+ + D ++ +A +D N R+ + + + ++A + A V Sbjct: 292 GEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVH 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVE 430 ++ WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E Sbjct: 346 ILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVRE 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH MAAG+T+ N + + F + I L S Sbjct: 406 Q--FTHFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATT 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 ID L P+G N P F F IR + AHL+ +Q+ L AIAF++ Sbjct: 464 TFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQM 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 P + L Q V G L +N W G K+ QL V D + F + Sbjct: 523 G--PQADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 569 >gi|146283098|ref|YP_001173251.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas stutzeri A1501] gi|145571303|gb|ABP80409.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas stutzeri A1501] Length = 528 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 169/528 (32%), Positives = 264/528 (50%), Gaps = 16/528 (3%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132 L D A +V+A+ ++I+ GD+D DGA + + + L + + +P+R Sbjct: 6 QLKGIDAAVELLVEALEKRQRILFVGDFDADGATASTVGVLGLRQLGAAHVDYLVPNRFE 65 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYG P ++ + L++TVD G +S D + A G+ V+V DHH E A Sbjct: 66 YGYGLTPEIVAVALQREPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAAD 125 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248 A+VNPN+ + + GV+F VL+ + LR+ + +L LLDLVAL Sbjct: 126 AIVNPNQPECAFPSKCIAGVGVIFYVLLALRARLRELDWFTRQGWAEPNLAELLDLVALG 185 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306 +V DVVPL NR V +GL R + PGL+A++E IT+ +LG+++GP +N Sbjct: 186 SVADVVPLDANNRILVHQGLARIRAGRARPGLRAILEVAGRDHRRITSTDLGFILGPRLN 245 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + +LG L+ +D +A +LD LN++R+ +E M +A A++ + Sbjct: 246 AAGRLDDMSLGIECLLCEDEALARDMATQLDELNKDRKAIEQGMQREALAQLKDLPLE-D 304 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + + WH G++G+LA+RLKE++ RP+ A + DG GS RS+ GF I + Sbjct: 305 LPFGLCLFEPDWHQGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALD 364 Query: 427 --FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 A G++ K GGHAMAAGL++ + NFG F + T DG L+ Sbjct: 365 AVAARHPGLISKFGGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEDDLTGRLLTDGQLS 424 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQA 543 ++ L L +AGP+G P P+F +L R+V HL++ +S+ TL Sbjct: 425 VEEFHLELARALRNAGPWGQHFPEPMFHG-VFQLVQQRIVGERHLKLVLKSECGSLTLDG 483 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 IAF V E + + L VN +RG + QL V +P Sbjct: 484 IAFNVDR----EIWPNPTVRWAELAYKLDVNEYRGQESVQLMVAHIAP 527 >gi|332359747|gb|EGJ37564.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK355] Length = 739 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 171/592 (28%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + ++FL PS+ L +P Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEESLQEFLEPSLDQLH-NP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRSAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGVSLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + S + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQSDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAIELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDLK------RPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T++ L D ++ + L +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLKADKLAELADILTEYILDNDLDLTGKTALYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|256847028|ref|ZP_05552474.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus coleohominis 101-4-CHN] gi|256715692|gb|EEU30667.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus coleohominis 101-4-CHN] Length = 769 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 270/580 (46%), Gaps = 27/580 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 + + W + + ++ I ++ I +A +LV R S+ + FL P ++ + P Sbjct: 4 TKYEWQ-RVANQDVDLVNNIQEQCQINAALANLLVARGFQSVHEVQLFLKPQLQQIQK-P 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D DKA RI QAI E+I ++GDYD DG + A+M L N YIPDR Sbjct: 62 DRLHDMDKAVARITQAIKQGEQITVYGDYDADGMTATAVMFETLESLGAKVNYYIPDRFK 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ I G QL++TVD G T + +A +QG+DV++ DHH + E A Sbjct: 122 DGYGPNQDAYQRLITGGTQLLVTVDNGVTGKKEVAFAHDQGVDVVITDHHSLPVELPNAV 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P DL G L GV F V + LLDLVA+ + D Sbjct: 182 AIVHPQYPGDLYQYGDLSGVGVAFKVAWALLGEFP-----------TELLDLVAIGEIAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +V + N V G+ + PG+KAL++ +T++++ + + P +NA GRI Sbjct: 231 LVSMAKENHVLVKFGIQQLQAGLRPGIKALLKIAGVQEESLTSQDVSFKLAPRLNALGRI 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 N G +LL + D E LA +D N+ R+ + + ++A K Q D + + Sbjct: 291 ANGNEGVKLLTTVDEDAAEQLAKDVDQCNRQRQDLVEQITQEALQKA--QAPDNLRRRTL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 ++ G WH G++G++A+RL EK G+P+ S + GSGRS++G+D+ + Sbjct: 349 LIVGHDWHQGVLGIVASRLVEKTGKPTIVASVNHGELVAKGSGRSVDGYDL--FAALDPH 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L GGH MA G++ + ++ A P I G L + Sbjct: 407 RKLLTAFGGHVMACGMSFMITQVPAIAKVLEQAAEAQHLDANQKPRLMIAGTLQPDEITE 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L ++ P+G N P+F + + S R + HL+ T + ++L +AF Sbjct: 467 KLYQQIQQLAPFGPDNEEPIFEITDPIITSKRQMGKNNEHLKFTLK-GTRQSLDVLAFGK 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 S G + + G + VN W+G QL + D Sbjct: 526 G----SNVDFFSPGVHLKLVGKVAVNSWQGRTTPQLLLED 561 >gi|229918414|ref|YP_002887060.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium sp. AT1b] gi|229469843|gb|ACQ71615.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium sp. AT1b] Length = 764 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 181/592 (30%), Positives = 286/592 (48%), Gaps = 30/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72 S +W+ + + I +A +LV R ++ AK FL L+ DP Sbjct: 4 SKKQWLYPETNPDD--VTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHDP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + +K RI QA + E ++I+GDYDVDG ++ ++M L+ V A YIP+R Sbjct: 62 YLFEQMEKVVTRIKQAADDGEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + NEG L+ITVDCG + + + G+D+I+ DHH+ K AY Sbjct: 122 EGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKDLGVDLIITDHHEPKETLPDAY 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P +D L AGV V + + + LLDL L T+ D Sbjct: 182 AIIHP-HIDPGYPYDKLAGAGVALKVAHAVLGRMPE-----------ELLDLAVLGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VPL G NR KG+ PG+ AL E S + E++G+ GP INA GR+ Sbjct: 230 LVPLDGENRLLAKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + ++L+++ +E LA +LD N+ R+ + + +A+ V + + V+ Sbjct: 290 DSAMPALQMLLAEHVEEALELAKQLDKQNKERQDIVKTIAAEAKELVEA---SMTEDRVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV ++W+PG+VG++A+RL E + RP + E GK GSGRSI+GFD+ + Sbjct: 347 VVASEKWNPGVVGIVASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDL--FKELSKN 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 E IL GGH AAG+T++ + L + + A +P + P +D L+ + V++ Sbjct: 405 EDILPHFGGHPAAAGMTLQSEHVAELRERLNRQA-ESIPDDVFVPRVNVDLKLSVNDVSL 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 LI + P+G GNP+P + KL+ IR + HL++ + D L I F Sbjct: 464 DLISEIGKLAPFGMGNPSPRVVVADAKLRDIRQIGRDATHLKVQL-AGDKRELDGIGFGF 522 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S+ + V G L VN W G ++ QL + D + F + Sbjct: 523 GHV----VSEISKMAHISVMGSLQVNEWNGMRKPQLMIQDLRVDDFQVFDYR 570 >gi|323351349|ref|ZP_08087005.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis VMC66] gi|322122573|gb|EFX94284.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis VMC66] Length = 740 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVNRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHRGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L V +D L+ + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELHLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QD + + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQQD-ASFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|324994008|gb|EGC25927.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK405] gi|324994672|gb|EGC26585.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK678] gi|327463267|gb|EGF09588.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK1] gi|327474875|gb|EGF20280.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK408] gi|327490001|gb|EGF21790.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK1058] Length = 740 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 175/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKARLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAKSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D ++ +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEKARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELYLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ QDS T + +AF Sbjct: 462 DTLKSFERLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISQQDS-TFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|94497632|ref|ZP_01304200.1| single-stranded DNA-specific exonuclease [Sphingomonas sp. SKA58] gi|94422849|gb|EAT07882.1| single-stranded DNA-specific exonuclease [Sphingomonas sp. SKA58] Length = 588 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 234/593 (39%), Positives = 332/593 (55%), Gaps = 15/593 (2%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66 L + S+SG W + D+V ++L+ R + D NP+IR Sbjct: 5 LNISRSLSGQPWRWRGAGADTRDPACVP-----DDLVTQLLLARGCTRDGLDAHRNPTIR 59 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 MPDP + D D AA R+ A+ E + IFGDYDVDGA S AL++R L ++A Y Sbjct: 60 GFMPDPSLFRDMDVAAERLADAVQRQEDVRIFGDYDVDGATSAALLIRLLRDLGLHARPY 119 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDR+++GYGP+ + + EGA LI+TVDCG+ +++AL A G+DV+V+DHH+ S Sbjct: 120 IPDRLMEGYGPSGEALVRLAGEGASLIVTVDCGAQAFEALSMAKASGVDVVVVDHHKCAS 179 Query: 187 EEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSL 241 + A+ALVNPNRLD+ GHL A GV FL+ + + L ++L L Sbjct: 180 QLPEAFALVNPNRLDEHPEAALHGHLAAVGVAFLLGARLLKTLDARGWFASRQKPNILDL 239 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LD+VAL TV DV L GLNRA+V +GL V ++ N GL ALI+ ++ +LG+ + Sbjct: 240 LDIVALGTVADVAQLKGLNRAFVAQGLKVMSKRRNIGLSALIDASRLTRAPLCHDLGFAL 299 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGR+G+++LG RLL ++D E +A +LD N+ RR +ES + EQAEA + Q Sbjct: 300 GPRINAGGRVGQADLGVRLLTTEDPAEAARIAAQLDQYNEERRAIESTVQEQAEALLAAQ 359 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 +V V+ G WHPG++G++A R+KEK GRP+ I+ ++ G G GSGRSI G D+ Sbjct: 360 G----NRAVAVIAGAGWHPGVIGIVAGRIKEKAGRPAIVIALDDAGVGKGSGRSISGVDL 415 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G V A + G+LV GGGHAMAAGLTV L D+ + V ID Sbjct: 416 GAAVLAAKDSGLLVAGGGHAMAAGLTVAADRIDALADYLDERLSAAVAKARDDRALLIDA 475 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 VL + VN + L+ GPYGAG P P+ A ++ VV HL+ D ++ Sbjct: 476 VLAPTGVNPDFVAALDQGGPYGAGWPAPLIAAGPMRVIKADVVGNGHLRAIMAGDDGRSI 535 Query: 542 QAIAFRVYGTPLGE-FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + IAFR T LG+ L R +R+ V G ++ W +L + DA+ + Sbjct: 536 KTIAFRRAETDLGQAILAAPRDRRLWVAGKAKIDDWGSRPAAELHLEDAAWAD 588 >gi|332637914|ref|ZP_08416777.1| single-stranded DNA-specific exonuclease [Weissella cibaria KACC 11862] Length = 768 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 185/580 (31%), Positives = 292/580 (50%), Gaps = 27/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 ++W A I + + ++VA++LVNR + A FL P + L DP + Sbjct: 6 YQWDF-PAVANEAAAKEIAETFGVSELVAKILVNRGYDTIETANAFLRPGVEGLY-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D A RI+ AI N EKI+++GDYDVDG S A+M L + + Y+P+R DG Sbjct: 64 LHDMDVAITRIMTAIDNGEKIVVYGDYDVDGITSTAIMTWALELMGADVSYYVPNRFKDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ EG QL+ITVD G + D + + N G+DVIV DHH++ +E A A+ Sbjct: 124 YGPNLAQYQRLAGEGMQLLITVDNGVSGRDEVAWLMNNGVDVIVTDHHEMPAELPEAVAV 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P D G L AGV F V + ++DL AL V DV+ Sbjct: 184 VHPRHPDGAYPFGGLSGAGVAFKVASALLEE-----------PADEVMDLAALGAVADVM 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 L+ NRA V GL + PGL AL++ + I + +G+ IGP +NA GR+ + Sbjct: 233 ELVDENRAIVAMGLANLKEDPRPGLAALLQTAGTNQADIDSMTIGFTIGPRLNALGRLAD 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G RLL++DD +E LA +++ LN+ R+ + + + L Q + V+V+ Sbjct: 293 ATDGVRLLLADDPEEASALAGQIETLNRERQEL----VATISDEALAQAQTLAADPVLVI 348 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++A+++ E G+P+ ++ +EDG+ GSGRS+ FD+ + Sbjct: 349 AGHGWHEGVLGIVASKVVEATGKPAIVLN-DEDGQMKGSGRSVPAFDL--FAGLDGHRDL 405 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGHA AAG+T+ N + D + A A P +I + A N Sbjct: 406 LTAFGGHASAAGMTIPTANLQAVRDVLRTEADAQGLAEAGLPEIRIAAEVTAKEFNAQNY 465 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTP 552 + L+ P+G GNP P+FA + +Q+++ ++ HL+ T +Q +L IAF Sbjct: 466 EQLQVLAPFGEGNPEPLFAVALNGVQNVKTMSEGKHLRFTASTQVG-SLPVIAFGRGSLA 524 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + R + + + G + N +RG Q+ + D Sbjct: 525 ---EDLAGRFESIKIVGTMSENRFRGDVTYQMMLTDIEAA 561 >gi|125718237|ref|YP_001035370.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus sanguinis SK36] gi|125498154|gb|ABN44820.1| Single-stranded DNA-specific exonuclease, 5'-3', putative [Streptococcus sanguinis SK36] Length = 740 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 272/592 (45%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVDRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N L D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVEFLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELYLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ D T + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNTRTMGAGNSHLKLKISQGD-ATFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|320160720|ref|YP_004173944.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila UNI-1] gi|319994573|dbj|BAJ63344.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila UNI-1] Length = 565 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 166/583 (28%), Positives = 263/583 (45%), Gaps = 29/583 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 RW + + ++L NR ++ A+ +L + P + Sbjct: 7 KRWKIAPVVPSY-LVEELK---DYSPVTRQLLYNRGITSKIEAEHYLQADLPG--YSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L+ + R++ A+ + EKI I+GDYDVDG + LM+ L + YIP+R +G Sbjct: 61 LSGMTEVVDRLLYAVDHREKIAIYGDYDVDGVTATTLMVEVLQAYGADVQWYIPNRFDEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + G +++TVDCG S + A QG+D+I+ DHHQ SE A + Sbjct: 121 YGLNADAVRELHERGVDVLLTVDCGIRSPGEARLAAQQGMDIIISDHHQPGSELPEAVGV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 + P + ++ HL G+ F + + + LDLVAL TV DVV Sbjct: 181 ICPKQAGNVYPYEHLSGVGLAFKIAEALLLRRPLVGVSAH-----NWLDLVALGTVADVV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL G NR+ V KGL + ++ G+ AL + I + ++G+++GP +NA GR+ Sbjct: 236 PLTGENRSLVRKGLEILKQSNREGILALARVAGLKLPSIESSHIGFILGPRLNAAGRVES 295 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ D + +LA +LD N+ R+ + + E+A D +I+ Sbjct: 296 AKAAVELLLARDLFQAGILAQQLDAQNRERQRLTQEVQERAIEIASAGKSDY----LIMA 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFA-ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 ++PG+VGL A+RL E + RP+ S E+ G+ S RSI F I + + E Sbjct: 352 FDPAFNPGVVGLAASRLVELYYRPAIVGQSEEDAGQTRASCRSIPEFHITRALDQCAE-- 409 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH AAG TV N L + A + L P D L S + + Sbjct: 410 LLERHGGHQAAAGFTVRNENLPVLQERLSSIAEQTLGNLDLIPSLHADMELPLSEIQPEV 469 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + L P G GNP F +++ R V HL+++ AIAFR Sbjct: 470 LWDLRRLQPTGEGNPEAFFVSRGVQVKDARCVGARGEHLKLSLVD-GRIVWDAIAFRQGH 528 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +Q+ + + V L N + G+ QLRV D P + Sbjct: 529 H------IQNMPRFVDVLYTLEQNTYNGNTTLQLRVRDLKPAQ 565 >gi|158522117|ref|YP_001529987.1| single-stranded-DNA-specific exonuclease RecJ [Desulfococcus oleovorans Hxd3] gi|158510943|gb|ABW67910.1| single-stranded-DNA-specific exonuclease RecJ [Desulfococcus oleovorans Hxd3] Length = 573 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 173/572 (30%), Positives = 277/572 (48%), Gaps = 16/572 (2%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82 Q + AI + DI A +LVNR + S+ A+ FL+ ++ L P P + D A Sbjct: 9 QPDPSAVTAIAKALPCSDIAASLLVNRGILSVKQARHFLSATVADL-PSPFSMKGIDTAV 67 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 RI A+ N E I++FGDYD DG + AL++ FL+ ++P RI++GYG P + Sbjct: 68 ARIHSALINHETILVFGDYDADGITATALLVGFLTQAGATVRHHLPHRILEGYGLKPRHI 127 Query: 143 -EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 E A L+ITVDCG TS+ A GID+I+ DHHQ +E A A+++P + Sbjct: 128 TEVAATHKASLLITVDCGITSHAAALACREAGIDLIITDHHQAPAEPPTALAVIDPAQAG 187 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGL 259 SG G L GV F +L+ + LR+ +L + DLVA+ + D+VPL G Sbjct: 188 CPSGLGDLAGVGVAFYLLIALRAFLREKGFWKTRPEPNLKACCDLVAIGAIADIVPLTGE 247 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGS 318 NR V GL + R PG++ALI I P ++AE++ + + P +NA GRI + Sbjct: 248 NRILVRTGLELLRTPSRPGIEALIAGAKIKKPALSAEDVAFRLAPRLNAPGRIDHAATAL 307 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 LL+++ + +A +L+ LN R+++E + + + V + + I++ +V+ +W Sbjct: 308 ELLLAETKEVAVKIAGRLNRLNTKRQMIEEEISGEIQQIVNDRINTIKERRSLVLAHRQW 367 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H G++G+ A+R ++ P I+ D GIGS RSI G + + + G Sbjct: 368 HQGVIGIAASRAARRYSLPVALITISGD-MGIGSARSIPGLHLYDALKGCAR--LFEDFG 424 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHA AAG + N F+ P ++D L + L+ +E Sbjct: 425 GHAQAAGFRIRMENLAAFETQFEYIVRQQTTPGDFVPAVEVDCELAMDRITNTLVREIEG 484 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFL 557 P+GAGNP P+F+ N + ++N H +MT ++ + AI F + Sbjct: 485 LSPFGAGNPEPLFSARNVRASDTFMINGRHRKMTLAHPGTDRGIAAIWFNTPASHQESSF 544 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + L + W GS Q+ + DA Sbjct: 545 FR------RILFRLRQDTWNGSGAPQIIIEDA 570 >gi|251777785|ref|ZP_04820705.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082100|gb|EES47990.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 588 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 170/601 (28%), Positives = 291/601 (48%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + I++K+ I +++ R+++NRN+ D K+++NP+ DP + Sbjct: 4 RWFVKNIKADY---KNISKKYGISELITRLMINRNIVEDDMIKNYINPNYSNFH-DPYEM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KAA+ + + I EKI I GDYDVDG SV ++ L C N + IPDRI DGY Sbjct: 60 KDIEKAAKILKEKIELKEKIRIIGDYDVDGVISVYILYTALKKCGANVDYEIPDRIKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N ++ + N+ ++T D G ++ + ++YA G+ VIV DHH + E Sbjct: 120 GINKKIILEAKNDEVDTLLTCDNGISAIEQIKYAKELGMTVIVTDHHDIPFVEDEKGDRI 179 Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 +++NP +++ +C AGV F ++ ++Y ++ +L L++ V Sbjct: 180 FISSEADSIINPKQIECGYKFDKICGAGVAFKLIEVLYEKMKISK-----EELYKLIEFV 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV LI NR +V GL + N GLK L++ + I+ +LG++IGP Sbjct: 235 AIATVCDVVDLIDENRIFVKNGLKMINNTTNLGLKYLMKETKMDGKEISTYHLGFVIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + G +LL+S D +E LA +L LN R+ M S +E+A + + Sbjct: 295 INASGRLDSAKKGLKLLLSQDEEEALNLAKELVELNDERKSMTSDGVEKAIEII--EGST 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ V V+ + H + G++A R++EK+ P+ ++ E+G GSGRSIE +++ Sbjct: 353 MKDDKVFVIYIPQVHESLAGIIAGRIREKYNVPTIILTKAEEGV-KGSGRSIEEYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +L K GGH MAAGL++ N L + + + + P ID L Sbjct: 410 EELLTCKDLLNKFGGHPMAAGLSLNENNIDLLREGLNR--NTKLTEEELIPKITIDLPLV 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 +N +I+ LE P+G GN P+F N V+ L++ ++ + Sbjct: 468 LENINYDMINDLELLEPFGKGNSKPLFGAKNVNAVKAMVLGQNKNVLKIKLKTTSGRVID 527 Query: 543 AIAFRVYGTPLGEFLMQSRGK-------------RMHVTGHLCVNYWRGSKRCQLRVLDA 589 +I F + + + + + +N + G+ Q+ + + Sbjct: 528 SIYFGDIEEFEQYITKKYNYEELQKLYGGEFNSVNLDLVFYPSINEYNGNISIQIVIQNY 587 Query: 590 S 590 Sbjct: 588 R 588 >gi|85708498|ref|ZP_01039564.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. NAP1] gi|85690032|gb|EAQ30035.1| single-stranded DNA-specific exonuclease [Erythrobacter sp. NAP1] Length = 572 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 234/566 (41%), Positives = 336/566 (59%), Gaps = 12/566 (2%) Query: 32 AITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 A +Q +V ++L+ R V+ D P++R +PDP D ++AA RI QA+ N Sbjct: 9 AASQDLDRS-VVTQLLMTRGVAADEVAKHAKPTMREFLPDPSEFRDMEQAAERIAQAVLN 67 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 E+I I+GDYDVDGA S AL++ L V A YIPDR+++GYGP+ + K +G+ Sbjct: 68 EEQITIYGDYDVDGATSSALLVDLLRSLGVEAGYYIPDRLLEGYGPSGEALVKLAEDGSS 127 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS---GQGH 208 LI+TVDCG+ +++AL A + G+DVIV+DHH+ +E P ALVNPNRLD+ GH Sbjct: 128 LIVTVDCGAMAHEALTMARDAGVDVIVVDHHKCAAELPPTAALVNPNRLDESDLAASHGH 187 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 L A GV FL+ + + R LR DL+SLLDLVAL TV DV L GLNRA+V + Sbjct: 188 LAAVGVAFLLAIALVRTLRAKGFFESRREPDLMSLLDLVALGTVADVAALHGLNRAFVSQ 247 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 GL V R+ G+ ALI+ + A +LG+ +GP INAGGRIGES LG RLL + D+ Sbjct: 248 GLKVLARRDRIGMAALIDASRLKRAPIASDLGFALGPRINAGGRIGESTLGVRLLTTSDA 307 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +E +A +L LN+ RR +E+ + E AEA++ Q +V V+ D WHPG++G++ Sbjct: 308 EEAREIAEQLSALNEERRAIEAEVQEAAEAQLEGQ----HNMAVQVLAADGWHPGVIGIV 363 Query: 387 AARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG 445 AAR+KEK G+PS I+ DG G GSGRSI G D+G + A EEG+LV GGGHAMAAG Sbjct: 364 AARIKEKTGKPSIVIALDPADGTGKGSGRSISGVDLGAAIIAAREEGLLVAGGGHAMAAG 423 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ + +F + V + V ++D L + L++ LE+AGPYG G Sbjct: 424 LTIAQDKLSAFTEFLDERLARDVERARISQVMQLDLSLAPGGLTPDLVNTLEAAGPYGVG 483 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM-QSRGKR 564 P P A ++ + +V HL++ D + +AIAFR T + + L+ +S+G++ Sbjct: 484 WPAPRVAVGPVRIVNADIVGKDHLRVIASGGDGRSFKAIAFRAAETEMAQTLIHRSKGRQ 543 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDAS 590 H G + ++ W +L + DA+ Sbjct: 544 FHFAGRVKIDDWGPRPAAELHLEDAA 569 >gi|239617855|ref|YP_002941177.1| single-stranded-DNA-specific exonuclease RecJ [Kosmotoga olearia TBF 19.5.1] gi|239506686|gb|ACR80173.1| single-stranded-DNA-specific exonuclease RecJ [Kosmotoga olearia TBF 19.5.1] Length = 1047 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 176/579 (30%), Positives = 303/579 (52%), Gaps = 18/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 WV L + + + I +A++LVNR ++ A +LNP R L+ DP + Sbjct: 3 KEWVLL--NADGTQVNHLVEYLGIEAFLAKLLVNRGITDVTEALKYLNPD-RTLLHDPFL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA + I++A + I++FGDYDVDG S AL+ + N + YIP R+ +G Sbjct: 60 MKDMKKAVKTIIEAGERGDSIVVFGDYDVDGVTSTALLYLAMKKMGFNVSYYIPLRLEEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + +E+ ++G +L+ITVDCG TS+D +++A G+ V+V DHH+VK + A A+ Sbjct: 120 YGLSRAAIEELYSQGHRLLITVDCGVTSFDEIEFAKKLGLKVVVTDHHEVKDKLPLAEAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R DD L GV F +L + LR + + LD+VAL T+ D+V Sbjct: 180 VNPKRPDDNYPFKGLAGVGVAFKLLSALNETLR------MPLNPEDYLDIVALGTIADIV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL NR V +G +++ GLK L+ + I+ +TA+++ + I P +NA GR+ Sbjct: 234 PLRDENRFIVREGTKKIQKEPLLGLKILLSYLRINPDNLTAQDIAFKIAPKLNAAGRMDS 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + + LLIS+D + A +L NQNR+++E+ + EQA ++ + ++ V+V+ Sbjct: 294 AVVALELLISEDKAQAMRTASRLLQHNQNRQMIEAKIFEQATKEIESNV-SMKDNFVVVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G++G++A+RL ++ RP F IS + G+G GS RS G I +++ I Sbjct: 353 SGENWHLGVLGIVASRLVAQYNRPVFLISTSD-GEGKGSARSPSGISIISLLNK--TADI 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH MAAG ++++ + +I + T ++D VL +++ + Sbjct: 410 LDEYGGHEMAAGFSIKKEKIPEFRKRLNEAYMDIYGEELPTYKIEVDDVLTLESISPETL 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGT 551 ++ P+G NP P F F ++ + H++M S + +TL A+ F + G Sbjct: 470 KKIDMLRPFGHSNPEPKFLFKGLNIERTKSFGSGGGHIKMILRSGERKTL-AVGFGMNGL 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ ++ + + G + +L ++DA Sbjct: 529 FDEFKYVKPNLLKLDAVASIKQDNGYGIQGMKLSLVDAR 567 >gi|308180902|ref|YP_003925030.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046393|gb|ADN98936.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus plantarum subsp. plantarum ST-III] Length = 778 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 177/590 (30%), Positives = 284/590 (48%), Gaps = 25/590 (4%) Query: 16 FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +WV L + + ++ +VAR+L+ R + + + A FL+ + L+ DP Sbjct: 6 KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D +KA RI +AI ++I I+GDYD DG S ++M L N N YIPDR D Sbjct: 65 TMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + ++ I G +L +TVD G + QGIDV+V DHH++ +E AYA Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + G L AGV F V + + ++ A+ TV D+ Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 V L G NR V GL V ++ PGL ALI+ I +T N+G+ I P +NA GR+ Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL + D + LA +++ LN+ R+ + + A + Q + + +V Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + G WH G++G++A+ + E G+P+ ++ ++DG+ GSGRS+E +++ + E Sbjct: 352 ITGHGWHEGVLGIVASHVVETSGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LV GGH MA GLTV L + + A + A IDG L + +A Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEAAAVSQQLADNAQVSLPIDGTLPLAEATLAT 469 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + +++ P+G NP P+F + R + HL++ + T+ AI F + G Sbjct: 470 LADIQALAPFGTDNPAPLFELVPTTVPQARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 T L Q+ + + G L N W G + Q+ V D + + Sbjct: 528 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 575 >gi|220916521|ref|YP_002491825.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter dehalogenans 2CP-1] gi|219954375|gb|ACL64759.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter dehalogenans 2CP-1] Length = 573 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 201/589 (34%), Positives = 293/589 (49%), Gaps = 25/589 (4%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69 +G RWV LA + + ARVL R A+ FL + L Sbjct: 2 SGATGKRWVEAAVDAARAAQLAGA--LDLHPLAARVLAARGHADPAEAEAFLAARLADL- 58 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP + D A RIV+A+ E+I +GDYDVDG S AL+ FL + Y P Sbjct: 59 PDPFRMKGMDAAVERIVRALEGGERIACYGDYDVDGVTSTALLCGFLRAAGADVVTYTPH 118 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+V+GYG N + +G +L++T+DCG TS D ++ A G+D +V+DHH V E Sbjct: 119 RLVEGYGLNGDAVRSLAAQGVRLLVTLDCGITSVDEVRVAAGLGVDTVVVDHHTVPVELP 178 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVA 246 A A++NP++ L A GV F + + + R LR+ + +L +LDLVA Sbjct: 179 AAAAILNPHQPGCAYPSKDLAAVGVTFALAMALRRRLRERGRFGPARPEPNLKEVLDLVA 238 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304 L TV DVVPL+G NR V GL PG++AL +P+TA +G+ + P Sbjct: 239 LGTVADVVPLVGANRILVRWGLEQLATSRRPGVRALKRVAGIADGTPVTAGQVGFRLAPR 298 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++ G RLL+S D+ + LA +LD NQ R+ +E +LEQA A + Sbjct: 299 INAAGRLDDAGRGVRLLLSGDAAAAQALADELDRENQARQEIERRILEQALADAAARVAA 358 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V + D WH G+VG++A+R+ E+F RP+ ++ EDG G GSGRSIEGF + Sbjct: 359 GARGLV--LARDGWHAGVVGIVASRVVERFHRPAVLVA-LEDGAGKGSGRSIEGFHLYDA 415 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 ++ G L + GGH AAG+TVER F+ A + P +IDG + Sbjct: 416 LAAC--SGHLARFGGHRHAAGVTVERAQVEPFRAAFEAHAAATIADEDLVPRCRIDGWVG 473 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQA 543 + V + L GP+GAG+P PVFA ++ V AHL++ L A Sbjct: 474 DAEVTEDAAEALGRLGPFGAGHPEPVFALRGAAARARTVGAGGAHLKLAL----GRGLDA 529 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 I F + + G + + + W G++R QL++ D P Sbjct: 530 IGFGMGDR------APACGGPVDAAFTIGFDEWDGTRRLQLKLKDLRPA 572 >gi|94309983|ref|YP_583193.1| exonuclease RecJ [Cupriavidus metallidurans CH34] gi|93353835|gb|ABF07924.1| ssDNA exonuclease, 5' --> 3'-specific [Cupriavidus metallidurans CH34] Length = 566 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 175/572 (30%), Positives = 264/572 (46%), Gaps = 24/572 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A A+ + +AR+L R V L + L P P + AA + Sbjct: 11 DEHAKALAAS-GLHPTLARILSARGV---AQPSELATDLPELAP-PASMKGIGHAAEYLA 65 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI + K++I DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 66 DAIAANRKLLIVADYDCDGATACAVGVRGLRMLGARVDYIVPNRFEYGYGLTPEIVELAA 125 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 + +I+TVD G S D + A +GIDV+V DHH A +VNPN+ Sbjct: 126 RQHPDVIVTVDNGIASVDGVAAANARGIDVVVTDHHLPGETLPEAAVIVNPNQPGCEFPS 185 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 +L GV+F VL+ + LR+ L +LLDLVAL TV DVV L NR V Sbjct: 186 KNLAGVGVMFYVLLALRAELRRRGVYTQATQPPLQTLLDLVALGTVADVVKLDTNNRILV 245 Query: 265 VKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLI 322 +GL R + +PG+ AL + +LG+ +GP +NA GR+ + +LG L+ Sbjct: 246 AQGLKRMRAGRMHPGVAALFRAAGREASRANTFDLGFGLGPRLNAAGRLADMSLGIECLL 305 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHP 380 +DD+ +A +LD +N+ RR +E+ M ++A + + + V D WH Sbjct: 306 TDDANRAWEIAQELDGMNRERRDIEAGMQQEALQILEQPLAGLDPTSRHTVSVFHDTWHQ 365 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 G++G++A+RLKEKF RP+ + ++ GSGRSI GF + + G+LVK G Sbjct: 366 GVIGIVASRLKEKFHRPTITFAPGDEEHIKGSGRSIPGFHLRDALDLVSKRHPGLLVKFG 425 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLTV +F F++ + V + DG + + + + +LE Sbjct: 426 GHAMAAGLTVRAKDFDTFVSAFEEVGREWLTDDQLARVIETDGDIEDACFSPEFVTLLE- 484 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 +G G P P F + V+ HL++ + S+ AI F G M Sbjct: 485 GQVWGQGFPAPTFCGE-FDVLRQTVLKGKHLKLQL-GRGSQRFDAIWFNHADALDGASAM 542 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 V L N + G R QL + A Sbjct: 543 --------VAYRLDNNTFNGMTRVQLVIEHAQ 566 >gi|297616953|ref|YP_003702112.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophothermus lipocalidus DSM 12680] gi|297144790|gb|ADI01547.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophothermus lipocalidus DSM 12680] Length = 951 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 184/579 (31%), Positives = 298/579 (51%), Gaps = 23/579 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W + I + I +++AR+L R + + + A+ F++ + L DP +L Sbjct: 7 WTVKTAEN--RVIREIQESLGISEVLARLLYLRGIRTREEARLFIDGGLDDLC-DPFLLP 63 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D A R+ +A EK++I+GDYDVDG SV ++ FL + V + YIP+R +GYG Sbjct: 64 DLAAAVNRLEKARQYREKVLIYGDYDVDGICSVVMLKEFLDYLGVENSYYIPNRFSEGYG 123 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N +++ + + QL++TVDCG +S ++ A G+DV+V DHHQ + PA A+VN Sbjct: 124 LNEEAVKEAVQKQYQLLVTVDCGISSCREIELAAGLGLDVVVTDHHQPPEQLPPAVAIVN 183 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + + G L AGVVF ++ + +D LDLV LATV D+V L Sbjct: 184 PKLVQEP-GLQELAGAGVVFKLVTAWA------DIAAPEYDKTKWLDLVCLATVADIVAL 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 +G NR V GL + PGL+AL++ ++ + A ++GY++ P +NA GRIG+++ Sbjct: 237 LGENRLLVKAGLEFVAKTERPGLRALLDESGLNGKSLKAWHIGYVVAPRLNAAGRIGDAD 296 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + LL++ D + LA L N+ R+ +E+ +L+QA +V DI+ V+VV G Sbjct: 297 VAVELLLTQDPGKGLDLARFLIQQNRQRQEVEAQILQQATKEV-ADSADIEAQRVLVVAG 355 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 D WH G++G++A+RL E+FGRP+ IS++ED G GSGRS++GFD+ + IL Sbjct: 356 DGWHQGVIGIVASRLTEQFGRPTILISWDED-YGKGSGRSVDGFDLYQA--LCQCSHILN 412 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGL +ER F + + A ++ + +ID + ++ L++ Sbjct: 413 RFGGHRYAAGLILERARFHEFREEINRVAASMTGSAGLVQRLEIDCEVALDDIDCQLLNE 472 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G GNP P L + V H + ++AIAF Sbjct: 473 LAMLEPFGEGNPVPNLLLRRSHLSDLMWVGKNSEHAKFWV-DNGKRKIEAIAFNAKIEKE 531 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 ++ + + ++ + G R L+V D P Sbjct: 532 VDYSSF----LVDLVFQPELDVYNGDTRLVLKVRDMKPS 566 >gi|313672628|ref|YP_004050739.1| single-stranded-DNA-specific exonuclease recj [Calditerrivibrio nitroreducens DSM 19672] gi|312939384|gb|ADR18576.1| single-stranded-DNA-specific exonuclease RecJ [Calditerrivibrio nitroreducens DSM 19672] Length = 586 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 177/580 (30%), Positives = 282/580 (48%), Gaps = 16/580 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 +RW+ E L + +P + VL+NR + +F + M DP + Sbjct: 15 YRWLYKKADEKKIIDLKLL-YPELPKSILEVLINRGFTNKKEIDEFFEAPLSG-MIDPFL 72 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D KA +R+V AI N EKI I+GDYDVDG + +LM FLS + + YIP+RI +G Sbjct: 73 LKDIHKAVKRVVHAIKNREKICIYGDYDVDGITATSLMYEFLSSITPLVDYYIPNRIEEG 132 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYA 193 Y N + + + +++ITVDCG TS D + YA + G+D IV DHHQ AYA Sbjct: 133 YSLNIDALNELKKKDVKVVITVDCGITSIDEIDYAKSIGLDTIVTDHHQLSDKLPSSAYA 192 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP + D HL GV F ++ + + + + L LDLVAL T+ DV Sbjct: 193 IINPLQPGDAYPFKHLSGVGVAFKFVLAL-KYVIEKQFDIKLPPLKYFLDLVALGTIADV 251 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 VP+IG NR +V GL + PG+ L + IS+ +T+ N+GY + P INA GR+G Sbjct: 252 VPMIGENRIFVKHGLKLLENSPRPGIAELKKISGLISTDLTSANIGYSLAPRINAVGRLG 311 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +S +LLI+ + E + A +L+ N+ R+ +E A+L++ K+ + + ++ I+ Sbjct: 312 KSETSVKLLITKNQNEAKWFAEELETENRYRQELEKAVLKETIEKIERKKLN-ERYKSII 370 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WHPG++G++A+RL E++ +P+ +S ++ GS RSI DI + Sbjct: 371 MYSKNWHPGVIGIIASRLVERYSKPAIVLS-IDNDLAKGSARSIPNIDIFSFLK--TIPD 427 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L++ GGH AAGL + N L + P P ID LN +N L Sbjct: 428 LLIEFGGHKYAAGLKLYTKNIRHLQRKLDDYIEKNSPNESLIPEIVIDAFLNPEDINEDL 487 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYG 550 + + P+G N PVF K Q ++ + F ++ + + F + Sbjct: 488 VKYINKLRPFGNTNSEPVFCMQKVKKAQEFSIMGKEKNIIKGFIGKNDSFFEVVGFNMGE 547 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + +N W G QL++ D Sbjct: 548 Y----RDLIRSCDTFDIVFTIDINNWMGGSNIQLKLKDIK 583 >gi|313206356|ref|YP_004045533.1| exonuclease recj [Riemerella anatipestifer DSM 15868] gi|312445672|gb|ADQ82027.1| exonuclease RecJ [Riemerella anatipestifer DSM 15868] gi|315023704|gb|EFT36708.1| Single-stranded-DNA-specific exonuclease recJ [Riemerella anatipestifer RA-YM] gi|325336199|gb|ADZ12473.1| Single-stranded DNA-specific exonuclease [Riemerella anatipestifer RA-GD] Length = 580 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 155/583 (26%), Positives = 269/583 (46%), Gaps = 24/583 (4%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 +W+ + A+ + +++LV R + A++F P++ + +P Sbjct: 13 NQKWIYKP-EPSEEVVDALISSIGYGTLESKILVLREIDNYQKAREFFKPNLEDIH-NPF 70 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRI 131 ++ D A RI AI N EKI+++GDYDVDG +VALM +LS + YIPDR Sbjct: 71 LMADMQNAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKKYLDFYIPDRN 130 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG + ++ G LII +DCG + D + YA GID I+ DHH A Sbjct: 131 TEGYGISKEGIDFAKENGFSLIIALDCGIKAIDKIDYAKELGIDFIICDHHLPGENIPKA 190 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+++P R D L GV F + + I R + +L L DL+A++ Sbjct: 191 VAVLDPKRTDCRYPFKELSGCGVGFKLCQGLNNIYRI-----PDEELYELTDLLAISIAA 245 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D+V + G NR GL R+ N G++ LI + + + N+ + I P INA GRI Sbjct: 246 DIVSMTGENRVLAKLGLKTLRKTRNLGIRLLIPKEKL-ATFDISNIVFEIAPKINAAGRI 304 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 L++SD+ + + + LN +RR M+ + A +V+ Q + Sbjct: 305 SHGKAAVELMVSDNLKHATQIVENILNLNDHRREMDMSSTTAALQQVID--TQQIQNATT 362 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV G W+ G++G++A+RL E + +P+ + +G+ + S RS+ FD+ + Sbjct: 363 VVYGSDWNKGVIGIVASRLTETYYKPTVVFTDGNNGEIVASARSVSDFDVHAALEEC--S 420 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + +K GGH AAGL++E+ F + F+K + P ID V++ +N Sbjct: 421 DLFLKFGGHPAAAGLSMEKEKFELFKEKFEKTVAKNIKEHQKEPSITIDTVVDIDDLNKD 480 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLA--HLQMTFESQDSET-LQAIAFR 547 + P+G N P+ N + ++ + H++ ++ +++ ++ + F Sbjct: 481 FYNFHRKLAPFGPHNMKPILVLKNLNISGHVKQMGKDNSHIKFYIQNPNNKRNIECVGF- 539 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 LG F + R K + + N+W+G+ L + Sbjct: 540 ----KLGHFADEFRNKTFDLAFTVEENHWKGNVTYYLNIKGVK 578 >gi|94971198|ref|YP_593246.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Koribacter versatilis Ellin345] gi|94553248|gb|ABF43172.1| exonuclease RecJ [Candidatus Koribacter versatilis Ellin345] Length = 579 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 166/585 (28%), Positives = 276/585 (47%), Gaps = 28/585 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 RW + A ++ + I +VA +L R + D A FLNPS+ L P + Sbjct: 2 RWTQRPF--DFSVASRLSAEANISPLVAVLLAARGIKYSDEAWMFLNPSLDALH-SPYEM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A R++ AI E+++I+GDYDVDG + ++ + C A ++P R+++GY Sbjct: 59 LGMDAAVERLMAAIAKKEQVLIYGDYDVDGTTATVILKTAIEICGGRAEFHVPHRLLEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYAL 194 G ++EK +G +LII+VD G ++ A + A+ G+D+IV DHH A A+ Sbjct: 119 GMRDEVIEKAAADGIRLIISVDTGIRAFAAAETASRLGLDLIVTDHHLPGADGVPKALAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NPN+ HLC AGV F V + + +P S L + A+AT+ D V Sbjct: 179 LNPNQTGCDYPCKHLCGAGVAFKVAQALLEKSDRARLIP------SFLKMAAIATIADAV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL G NR +V GL R+ N GLK L+ I ++ +++ + I P +NA GR+ Sbjct: 233 PLTGENRVFVSLGLEGLRKPVNAGLKELLALCRIDGRTLSTQDVAFRIAPRLNAAGRMDV 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + D++ + +A L+ LN +R+ E+ ++ E ++ + V+ Sbjct: 293 ARDVVELFTTRDAKHAKDVAQHLNKLNGDRQEEEARIMAAIEKQL-ADDASFKDRYSFVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 +G WH G++G+ A+R+ ++ RP+ I+ E G+ GSGRSI F + + + Sbjct: 352 DGAEWHRGVIGICASRVVDRVHRPALVIARHE-GEAHGSGRSIPSFHLLNALESC--ADL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGHA A G + +L + + +A + P D L S V+ L Sbjct: 409 FSRYGGHAHAVGFALPEDRLPQLREKLEAYARQHLKPADFVPEMVYDTELPLSDVSEKLY 468 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDS----ETLQAIAFRV 548 ML+ P+G NP PVF +L R + H++M Q + + +A+A+R Sbjct: 469 LMLQKLEPFGMSNPQPVFVSRGARLAGPARTLKEKHVKMRLAPQSNGGFQRSFEALAWR- 527 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVN---YWRGSKRCQLRVLDAS 590 L + G + V + N + G QL + D + Sbjct: 528 KNEKLQAEPPLNMGDLLDVAFTIDHNDHPDFGG---LQLILCDWA 569 >gi|325687685|gb|EGD29706.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK72] Length = 740 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 173/592 (29%), Positives = 275/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVDRIRSAIENYEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A+ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQSLGVDVIVTDHHSMPEELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + + + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGVQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + ++ V Sbjct: 291 LDDPNPAIELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDSK------RPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L V +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELRLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ +D + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISKED-AAFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|114566343|ref|YP_753497.1| single-stranded DNA-specific exonuclease-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337278|gb|ABI68126.1| Single-stranded DNA-specific exonuclease-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 932 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 188/577 (32%), Positives = 296/577 (51%), Gaps = 21/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 W++ E I I ++ I ++AR+LV R +S + A FL + L DP Sbjct: 2 RNWINGKYDETI--VEKIAEELGISCLLARILVKRGISETEEANRFLYGKLEDL-NDPFQ 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D A RI QAI EKI+++GDYDVDG S+ +++ L N + Y+PDR ++G Sbjct: 59 LKDMDLAVARIEQAIAAGEKIVVYGDYDVDGVCSIVILLECLQLLGANCSYYVPDRFLEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +EK +EG QL+ITVDCG +S Q A + G+D+I+ DHH+ + PA A+ Sbjct: 119 YGLNSDAIEKLASEGCQLLITVDCGISSLAEGQLACDLGMDLIITDHHRPLDKLPPAVAI 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP L +G L AGV F + ++R + L + L+LVALATV D+V Sbjct: 179 INPK-LGGGAGSSDLAGAGVAFNLAAALWRGRMEQ------EKLYNWLELVALATVADIV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL NR V GL + GL+AL+ + + ++ +++GP +N+ GR+ Sbjct: 232 PLRSDNRIMVKYGLKKIGQTSRKGLRALLRETALEGKNLRTWHIAFVLGPRLNSAGRLNS 291 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ D + +A L +N+ R+ +E + +A A++ Q D+++ ++++ Sbjct: 292 ARNSIELLLAQDEKRAASMAAFLCRVNEERKRIEETIFREAVAEI-EQHIDLEKDPILLL 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G++WH G++G++A+RL E + RP IS E G GS RSI G DI + G Sbjct: 351 GGEKWHDGVIGIVASRLNEHYRRPCILIS-WEGDCGRGSARSIAGIDI--FAALDYASGF 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH MAAGL +ER NF + ++A + + KID + + +N AL+ Sbjct: 408 LQQFGGHKMAAGLRLERRNFPAFKEKILEWAATQELSSLKPSERKIDAEIKPADINEALL 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 LE P G GNP P+F + S ++ +++ + L+ IAF Sbjct: 468 KELELLQPCGEGNPVPLFLLRQVSINSAALIGKGREHFKIKTEP-DELEGIAFNQAQY-- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + R + L N ++G KR QL+V D Sbjct: 525 --MELPWRNSCQDLLFELTENEYQGRKRIQLKVKDMK 559 >gi|188589880|ref|YP_001920145.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum E3 str. Alaska E43] gi|188500161|gb|ACD53297.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum E3 str. Alaska E43] Length = 588 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 169/601 (28%), Positives = 291/601 (48%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + I++K+ I +++ R+++NRN+ D K+++NP+ DP + Sbjct: 4 RWFVKNIKADY---KNISKKYGISELITRLMINRNIVEDDMIKNYINPNYSNFH-DPYEM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KAA+ + + I EKI I GDYDVDG SV ++ L C N + IPDRI DGY Sbjct: 60 KDIEKAAKILKEKIELKEKIRIIGDYDVDGVISVYILYTALKKCGANVDYEIPDRIKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N ++ + N+ ++T D G ++ + ++YA G+ VIV DHH + E Sbjct: 120 GINKKIILEAKNDEVDTLLTCDNGISAIEQIKYAKELGMTVIVTDHHDIPFVEDEKGDRI 179 Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 +++NP +++ +C AGV F ++ ++Y ++ +L L++ V Sbjct: 180 FISSEADSIINPKQIECGYKFDKICGAGVAFKLIEVLYEKMKISK-----EELYRLIEFV 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV LI NR +V GL + N GLK L++ + I+ +LG++IGP Sbjct: 235 AIATVCDVVDLIDENRIFVKNGLKMINNTTNLGLKYLMKETKMDGKEISTYHLGFVIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + G +LL+S D +E LA +L LN R+ M S +E+A + + Sbjct: 295 INASGRLDSAKKGLKLLLSQDEEEALNLAKELVELNDERKSMTSEGVEKAIEII--EGST 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ + V+ + H + G++A R++EK+ P+ ++ E+G GSGRSIE +++ Sbjct: 353 MKDDKIFVIYIPQVHESLAGIIAGRIREKYNVPTIILTKAEEGV-KGSGRSIEEYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +L K GGH MAAGL++ N L + + + + P ID L Sbjct: 410 EELLTCKDLLNKFGGHPMAAGLSLNENNIDLLREGLNR--NTKLTEEELIPKITIDLPLV 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 +N +I+ LE P+G GN P+F N V+ L++ ++ + Sbjct: 468 LENINYDMINDLELLEPFGKGNSKPLFGAKNVNAVKAMVLGQNKNVLKIKLKTTSGRVID 527 Query: 543 AIAFRVYGTPLGEFLMQSRGK-------------RMHVTGHLCVNYWRGSKRCQLRVLDA 589 +I F + + + + + +N + G+ Q+ + + Sbjct: 528 SIYFGDIEEFEQYITKKYNYEELQKLYGGEFNSVNLDLVFYPSINEYNGNISIQIVIQNY 587 Query: 590 S 590 Sbjct: 588 R 588 >gi|300869207|ref|ZP_07113801.1| exonuclease RecJ [Oscillatoria sp. PCC 6506] gi|300332752|emb|CBN58999.1| exonuclease RecJ [Oscillatoria sp. PCC 6506] Length = 745 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 169/647 (26%), Positives = 287/647 (44%), Gaps = 82/647 (12%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLL 68 + ++ RW Q +A + Q+ + ++A+VL+NR + + FL P + +L Sbjct: 12 DRTLPNQRWQIYPSQA--QQAEHLAQEIGLSPLLAQVLINRGIESAQGVQAFLEPELEVL 69 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 P D + + +AI EKI I GDYD DG S AL++R L + IP Sbjct: 70 PPPMQDFPDLAMSVELLHEAISQGEKIAICGDYDADGMTSTALLLRSLKTLGAKVDYAIP 129 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 R+ +GYG N ++E+F +EG LI+TVD G +Y + A G++VI+ DHH + + Sbjct: 130 SRMHEGYGINERIVEEFKSEGVSLILTVDNGIAAYQPIARARELGLNVIITDHHDIPPQL 189 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 PA A++NP + + S + GV +++ + + + + + + + +L+L L Sbjct: 190 PPANAILNPKLISESSPYRGVAGVGVAYILAISLAQRMDK-----MQGLVNPMLELFTLG 244 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--------------------- 287 T+ D+ PLIG+NR +V +GL + G++ALIE Sbjct: 245 TIADLAPLIGVNRRWVKRGLRLLPHSQLVGVQALIEVSGLVRENKPEGERLSTQNSTSSS 304 Query: 288 -------ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340 + + E++G+ +GP INA GRI + + LL +DD A + + +N Sbjct: 305 AASAIKQSKNSLKPEDIGFRLGPRINAIGRISDPQIVIELLTTDDRDLALERAKQCEEIN 364 Query: 341 QNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400 Q R+ + + +A A D+QQ V+VV WH G++G++A+RL E++G P F Sbjct: 365 QRRQELCQEIEAEAIAYCEETQVDLQQERVLVVVQPGWHHGVIGIVASRLVERYGVPVFI 424 Query: 401 ISFEEDG---------------------------------KGIGSGRSIEGFDIGKMVSF 427 ++E++ K GS R I F + + + F Sbjct: 425 GTYEDEEEEDAESLAPEKMSISSEDLSDKIDNLSIKSVGKKIRGSARGIPEFHVFEALQF 484 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 +L K GGH A G ++ N FA + P+ ID N + Sbjct: 485 CDR--LLGKYGGHKAAGGFSMPAANLEEFRTQLGIFARKSLELQHLKPLVSIDAQANFAE 542 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFES--QDSETLQA 543 +N+ L +++ P G N PVF PN ++ V H+++TF + L+A Sbjct: 543 INLDLYRQIDALQPCGIENKAPVFWTPNVRIIEQATVGKEKAHIKVTFSQDVKSIPNLKA 602 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IA+R R+ + HL N + G+ +L ++ Sbjct: 603 IAWRWREYF-------PLPPRVDIAYHLRENTYNGNTTVELELVGVR 642 >gi|117625123|ref|YP_854111.1| ssDNA exonuclease RecJ [Escherichia coli APEC O1] gi|115514247|gb|ABJ02322.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli APEC O1] Length = 530 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 169/530 (31%), Positives = 267/530 (50%), Gaps = 16/530 (3%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132 L+ +KA + A +I++ GD+D DGA S AL + + N + +P+R Sbjct: 6 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 65 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYG +P ++++ GAQLI+TVD G +S+ +++A + GI VIV DHH A Sbjct: 66 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 125 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248 A++NPN D L GV F +++ + LR +L LLDLVAL Sbjct: 126 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALG 185 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSIN 306 TV DVVPL NR +G+ R + PG+KAL+E N + A +LG+ +GP +N Sbjct: 186 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDPQKLAASDLGFALGPRLN 245 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDI 365 A GR+ + ++G LL+ D+ E +LA +LD LNQ R+ +E M +A + Sbjct: 246 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRD 305 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + + WH G+VG+LA+R+KE+F RP A + DG GSGRSI+G + + Sbjct: 306 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 365 Query: 426 SFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 G+++K GGHAMAAGL++E F F + + + DG L Sbjct: 366 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPL 425 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQ 542 + + + + + +L AGP+G P P+F + +L R+V HL++ E L Sbjct: 426 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 484 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF V + + + + + L +N +RG++ Q+ + + P+ Sbjct: 485 GIAFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 530 >gi|152997761|ref|YP_001342596.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp. MWYL1] gi|150838685|gb|ABR72661.1| single-stranded-DNA-specific exonuclease RecJ [Marinomonas sp. MWYL1] Length = 610 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 165/564 (29%), Positives = 257/564 (45%), Gaps = 20/564 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 + RV ++R+V D+ P + L PD L D AA+ + AI +KI+I G Sbjct: 56 SATLQRVFLSRDVVSVAQLDYRLPHL--LRPD--SLFDLTTAAKILADAIVAGQKILIVG 111 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S +L + L +P+R GYG P ++E +++TVD Sbjct: 112 DFDADGATSTSLGILALEAMGAIAPEYLVPNRFEFGYGLTPEIVEVAQERSPDVLVTVDN 171 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G S D + A + G+ V+V DHH A A+VNPN + +L GV+F V Sbjct: 172 GIASIDGVLAAKSYGMKVVVTDHHLPGDTLPNADAIVNPNHPNCGFPSKNLAGVGVIFYV 231 Query: 219 LVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + + L N + LDLVAL TV DVVPL NR V +G+ + Sbjct: 232 MSALRAELNSRNWFADQHIPEPKMADYLDLVALGTVADVVPLDANNRILVQQGIKRIQAG 291 Query: 275 -GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG+ AL+E + A +LG+++GP +NA GR+ + ++G L++ + Sbjct: 292 LARPGILALLEVGRRDYTQLKASDLGFVVGPRLNAAGRLDDMSIGIECLLAVHPHQARDY 351 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLK 391 A +LD N+ R+ +ES M EQAE + + D+ Q + + WH G++G+LA+R+K Sbjct: 352 AQQLDQFNRERKAIESDMKEQAELVLESLLDEEQDMPNGMCFYDADWHQGVIGILASRMK 411 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 +K RP A + + + GS RSI G I + +L K GGHAMAAG++++ Sbjct: 412 DKCHRPVIAFAKVGENELKGSARSIPGVHIRDALDLLAKRYPQLLSKFGGHAMAAGMSIK 471 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 ++ F V DG L +++ + + +GP+G P P Sbjct: 472 ESHYEAFQLAFDAIITEWVTPEQLEATLLTDGPLAPEDFSLSFAEQVRLSGPWGQMFPEP 531 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + R+V HL++ L AI+F V + + + Sbjct: 532 CFDG-VFDILQQRIVGEKHLKLMVREPSSGLLLDAISFFVDLNQWP----NDKVTQARLV 586 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN +RG + QL V P Sbjct: 587 YKLDVNEFRGQRNLQLLVDYLEPA 610 >gi|220934632|ref|YP_002513531.1| single-stranded-DNA-specific exonuclease RecJ [Thioalkalivibrio sp. HL-EbGR7] gi|219995942|gb|ACL72544.1| single-stranded-DNA-specific exonuclease RecJ [Thioalkalivibrio sp. HL-EbGR7] Length = 574 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 188/561 (33%), Positives = 272/561 (48%), Gaps = 21/561 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 D++ARVL R V D+ ++ L P +L+ + A R+ +A+ + E+I++ GD Sbjct: 22 DVLARVLALRGVLDPAQCDY---GLKGLAA-PHLLSGIEPAVERLERALRSDERIVVVGD 77 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S A+ +R LS + + +P+R GYG P ++ A L+ITVD G Sbjct: 78 FDADGATSTAVALRALSALGARDVHFRVPNRFEYGYGLTPEIVSVLRPLDAGLLITVDNG 137 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S D + A + G+ V+V DHH + A ALVNPN D HL GV+F V+ Sbjct: 138 VSSLDGVAAARHAGMSVLVTDHHLPGTSLPEADALVNPNLPGDPFPSKHLAGVGVIFYVM 197 Query: 220 VLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ- 274 + + LR +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 LALRARLRDSGWFDTRGIDEPNLAELLDLVALGTVADVVPLDQNNRILVEQGLRRIRAGA 257 Query: 275 GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG+ AL+E S A +LG+ +GP +NA GR+ + LG R L++DD E LA Sbjct: 258 AIPGIGALLEVARRSPERSVATDLGFAVGPRLNAAGRLDDMALGIRCLLTDDPVEARALA 317 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARLKE 392 LD LN +RR +E+ M +A A + D + + +WH G++G+LAAR++E Sbjct: 318 AALDDLNADRRDIEAQMQAEALAGLEALPVDSWGDRYGVCLYEPQWHQGVIGILAARIRE 377 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVER 450 + RP A + DG+ GS RSI G I + A G++ K GGHAMAAGL++ Sbjct: 378 RIHRPVIAFADAGDGQIKGSARSIPGLHIRDALDDVAARHPGLISKFGGHAMAAGLSLPL 437 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N + F V V DG L +++ L AGP+G G P PV Sbjct: 438 ENLQAFSEAFDHTVAARVSPEDLEGVVHSDGELTPGEISLDTATRLRDAGPWGQGFPPPV 497 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F ++ RV+ HL++ + IAF V E L R+ + Sbjct: 498 FDGE-FEILDRRVLKERHLRLQLRPAPGAPPITGIAFNVDWDDWPEAL-----DRVRLAY 551 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L VN ++G QL + Sbjct: 552 RLEVNEYQGLVSPQLMIEHVE 572 >gi|221068832|ref|ZP_03544937.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas testosteroni KF-1] gi|220713855|gb|EED69223.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas testosteroni KF-1] Length = 579 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 175/588 (29%), Positives = 272/588 (46%), Gaps = 29/588 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + A+ Q I ++A++ R V L+ + L+P P L Sbjct: 2 KIIPRSIPNDSVSALLQA-KIHPLLAQLYAARGVCSADE---LDDAPARLLP-PSGLRGI 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 D A + + AI +++ I DYD DGA + A+ +R L +A+ +PDR+VDGYG Sbjct: 57 DAAVQLLADAIAAQKRLCIVADYDCDGATACAVGLRGLRMLGATHADYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + GA ++ITVD G S + + A G+ V+V DHH PA A+VNP Sbjct: 117 TAPISRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPPADAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 N+ + GV+F VL+ + LR + + L LL LVAL TV DVV Sbjct: 177 NQPGCEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVK 236 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313 L NR V GL R+ PG++AL E + + + G+ +GP INA GR+ + Sbjct: 237 LDANNRRLVALGLKQIRKGSMQPGIRALFEASGRRFDMASTIDFGFALGPRINAAGRLAD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372 +G L ++D + LA LD +N+ RR +E +M E A C+D + I Sbjct: 297 MTIGIECLTTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAIS 356 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA 428 V +H G+VG++A+R+K+K RP+F + + + GSGRSI GF + + Sbjct: 357 VFDPDFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV 416 Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 G++++ GGHAMAAG T+ +F F + A + A T + DG L+ Sbjct: 417 SKRHPGLILRFGGHAMAAGCTITEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQ 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 ++ LI+ + +G G P F ++ S R+V HL++ S+ + I F Sbjct: 477 WLDTGLIEQM-QLAVWGQGFAAPTF-SEELEITSQRLVGEKHLKLELLHHGSK-IDGIWF 533 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 R + L +N WRG ++ Q V A EG Sbjct: 534 NHTD---------PLPARTTLAYRLDINEWRGERKVQFLVEAAQDFEG 572 >gi|116492891|ref|YP_804626.1| exonuclease RecJ [Pediococcus pentosaceus ATCC 25745] gi|116103041|gb|ABJ68184.1| exonuclease RecJ [Pediococcus pentosaceus ATCC 25745] Length = 773 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 162/581 (27%), Positives = 277/581 (47%), Gaps = 28/581 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 F W + + + + + +++V R + + F++ + ++ DP++ Sbjct: 6 FNWQV--SKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMS-IVHDPML 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D KA RI AI ++EKI+++GDYD DG S +M L N ++PDR DG Sbjct: 63 LHDMQKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFKDG 122 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN + FIN+ QLIITVD G +A+++A +QG +VIV DHH++ AYA Sbjct: 123 YGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEAYA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P + G L GV F V + + + LDL A+ T D+ Sbjct: 183 IIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPE-----------EFLDLYAIGTTADL 231 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 V + NR V GL + GL+ LIE + S +++G+ + P INA GR+ Sbjct: 232 VSMTDENRFLVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLE 291 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ LL + D +E +A +++ +N R+ + S + +AE L +Q V Sbjct: 292 NASRAVELLTTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIALDDEHASRQTLV-- 349 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + G WH G++G++A+R+ E+ +P+ +S + +G GSGRS+ ++ + ++ Sbjct: 350 IAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAIN--PIR 407 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 V GGH MA G+TVE L D +K A + P +ID +N + Sbjct: 408 EKCVGFGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEK 467 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549 L+ ++ GP+G NP P F + +++ + + HL+ T ++ + AIAF+ Sbjct: 468 LVSEMKILGPFGMNNPVPKFELEDVRVKEAKAIGKDGAHLKFTL-DDGNQNINAIAFKRG 526 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + + + G + N WRG+ Q D Sbjct: 527 ELA---DVLNNVANPISLVGTINTNEWRGNVSVQFMTDDIK 564 >gi|254556913|ref|YP_003063330.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus plantarum JDM1] gi|254045840|gb|ACT62633.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus plantarum JDM1] Length = 778 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 177/590 (30%), Positives = 284/590 (48%), Gaps = 25/590 (4%) Query: 16 FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +WV L + + ++ +VAR+L+ R + + + A FL+ + L+ DP Sbjct: 6 KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D +KA RI +AI ++I I+GDYD DG S ++M L N N YIPDR D Sbjct: 65 NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + ++ I G +L +TVD G + QGIDV+V DHH++ +E AYA Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + G L AGV F V + + ++ A+ TV D+ Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 V L G NR V GL V ++ PGL ALI+ I +T N+G+ I P +NA GR+ Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL + D + LA +++ LN+ R+ + + A + Q + + +V Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + G WH G++G++A+ + E G+P+ ++ ++DG+ GSGRS+E +++ + E Sbjct: 352 ITGHGWHEGVLGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LV GGH MA GLTV L + + A + A IDG L + +A Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTLPLAEATLAT 469 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + +++ P+G NP P+F + R + HL++ + T+ AI F + G Sbjct: 470 LADIQALAPFGTDNPAPLFELVPTTVPHARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 T L Q+ + + G L N W G + Q+ V D + + Sbjct: 528 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 575 >gi|28378711|ref|NP_785603.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus plantarum WCFS1] gi|28271548|emb|CAD64453.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus plantarum WCFS1] Length = 778 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 177/590 (30%), Positives = 284/590 (48%), Gaps = 25/590 (4%) Query: 16 FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +WV L + + ++ +VAR+L+ R + + + A FL+ + L+ DP Sbjct: 6 KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D +KA RI +AI ++I I+GDYD DG S ++M L N N YIPDR D Sbjct: 65 NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + ++ I G +L +TVD G + QGIDV+V DHH++ +E AYA Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + G L AGV F V + + ++ A+ TV D+ Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 V L G NR V GL V ++ PGL ALI+ I +T N+G+ I P +NA GR+ Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL + D + LA +++ LN+ R+ + + A + Q + + +V Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + G WH G++G++A+ + E G+P+ ++ ++DG+ GSGRS+E +++ + E Sbjct: 352 ITGHGWHEGVLGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LV GGH MA GLTV L + + A + A IDG L + +A Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTLPLAEATLAT 469 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + +++ P+G NP P+F + R + HL++ + T+ AI F + G Sbjct: 470 LADIQALAPFGTDNPAPLFELVPTTVPHARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 T L Q+ + + G L N W G + Q+ V D + + Sbjct: 528 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 575 >gi|57234225|ref|YP_181687.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides ethenogenes 195] gi|57224673|gb|AAW39730.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides ethenogenes 195] Length = 566 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 168/580 (28%), Positives = 275/580 (47%), Gaps = 31/580 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W +Q P ++ +L NR + + + A FL+P R L DP + Sbjct: 9 WKLKPAPP-----EETSQNFPYPPLITSLLYNRGIKTPEEADMFLSPD-RRLDHDPFLFP 62 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +KA RI +A+ EK++++GD+D DG + A++ ++ N YIP RI +GYG Sbjct: 63 DMEKAVSRIYKALLTGEKMVVYGDFDADGLTATAVLTTGIARLGGNVAPYIPHRITEGYG 122 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 S +EK EGA LII+ DCG T+ ++ A G+DVIV DHH E PA+A++N Sbjct: 123 LKISALEKHKAEGASLIISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAHAIIN 182 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P L GV + V+ +YR L ++++ LLDLVA+ TV D+VP+ Sbjct: 183 PKVPGSAYPFKELAGVGVAYKVIQALYRNLGRESEA------RDLLDLVAIGTVADIVPI 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 + NR V +G+ + PG+ + + + I E++ +++ P +NA GR+ + Sbjct: 237 LDENRYLVKEGVKRLNAEPRPGIVEMAQLSRLRLGEIEPESISWIMAPRLNAAGRLEHAM 296 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G +LL S + + LA+ L+ N R+ + +E+A A++ D Q ++V Sbjct: 297 AGYKLLTSTAISDSQELALWLENKNTERQQLTVRFVEKARARL-----DSQSPPSLLVYS 351 Query: 376 DRWHP-GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 D P GI GL+A RL +++ RPS I GS RSI F+I + + + + Sbjct: 352 DAECPQGISGLVAGRLSDEYYRPSIVI-KTNADFATGSCRSIPDFNI--IQALSRFAPLF 408 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHA AAG T+ + +A + + P ID + S + A + Sbjct: 409 SHFGGHAQAAGFTLPTEHLDTFIKGISAYAEESLSGVELKPFIDIDIDTDLSQLCPATLR 468 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 LE P+G NP PVF + R + HL++ + + IAFR + Sbjct: 469 ELERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGIAFRQFKEL 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G + + +L ++ W G+ +L+++D +P Sbjct: 528 NGFLQ-----SPVDIVYNLELDKWCGTDTLRLKIIDMAPA 562 >gi|262373742|ref|ZP_06067020.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter junii SH205] gi|262311495|gb|EEY92581.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter junii SH205] Length = 566 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 177/560 (31%), Positives = 270/560 (48%), Gaps = 21/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V+ + + LL P+ L D D+A I QAI + +I+I Sbjct: 20 GVPTFIAEILARRGVASEQELE--LKLKHLLAPN---LKDLDRAVEIIDQAIDHQLQIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITV 156 GDYD DGA S ALM+ L +PDR GYG P + E L+ITV Sbjct: 75 VGDYDADGATSTALMVLVLREMGAKVEYLVPDRFKYGYGLTPKIAELAAQTYRPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A G+ VI+ DHH A A+VNPN+L+ L GV F Sbjct: 135 DNGISSHAGVEVAQALGMQVIITDHHLTTKPTPSAEAVVNPNQLNCDFSSKSLAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + Q NK + LDLVAL T DV L NR + GL + Q Sbjct: 195 YVLAKLASHRSQQNKSTS--KVAQYLDLVALGTYADVASLDYNNRILIDAGLKRIQQNQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ S + A++LG+++GP INA GR+ +G L+++D LA Sbjct: 253 RAGILALLDVAGRDASTLRAQDLGFVLGPRINAAGRMESMRIGIECLLAEDMATAYPLAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E+ M +QA + Q + Q IV+ ++WH G++G++A RLKE+ Sbjct: 313 QLNQLNVERRQVETEMKQQALIALQNVQLETDQIPPAIVMYDEQWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + +EDG GS RSI+G I M+ ++ GGHA AAGLT+++ Sbjct: 373 FHRPSLVFAPDEDGIHIKGSARSIDGIHIRDMIEHVAEQYPHLVTHFGGHAAAAGLTLKK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F F + + A + DG L +A++++ +D +E GP+G P P Sbjct: 433 AHFNEFKQLFIQTIAEM-DAELFHATIWTDGELPENALDLSTVDWIEQMGPWGQKFPFPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R + HL++ ++++ AIAF F + + Sbjct: 492 FQGT-FKVIDFRWLKDQHLKLKLSL-GTQSIDAIAFNAVDR----FEFNPMQGFVDLVYT 545 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L N + G+ QL+++ Sbjct: 546 LERNVFNGNVSLQLQIVHLK 565 >gi|254361858|ref|ZP_04977992.1| recombination protein J [Mannheimia haemolytica PHL213] gi|153093397|gb|EDN74388.1| recombination protein J [Mannheimia haemolytica PHL213] Length = 573 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 172/561 (30%), Positives = 268/561 (47%), Gaps = 20/561 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R + L +++ L P L + ++A ++QA +I+I GD Sbjct: 20 PLLNRIYQSRGIKNTQE---LEHNLKNLHR-PQQLANIEQAVDLLLQAFREKSRIIIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S +L + L + + IPDR GYG + ++ E + +GA L++TVD G Sbjct: 76 FDADGATSTSLALIALRQLGFDKVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S + + + I V+V DHH A ALVNPN L GV+F V+ Sbjct: 136 ISSTEGIALLKSHQIQVLVTDHHLPPESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVM 195 Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + +R+ + + LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 MALRSRMREQHLFENKPEPNFAELLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCR 255 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 G+KAL E S + A +LG+ I P +NA GR+ +LG LLI ++ + LA+ Sbjct: 256 LGIKALAEVGKRDLSTLQAADLGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALD 315 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ E M +A + +QA IV+ WH G++G+LA+R+K++ Sbjct: 316 LDSLNQTRKEFEQEMKAEALSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQ 375 Query: 394 FGRPSFAISF--EEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 F RP A + EE GS RSI G + ++ ++ K GGHAMAAGLT+ Sbjct: 376 FNRPVIAFAQESEESEYLKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIH 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F + + I+ + DG LNA +A +M+ GP+G P P Sbjct: 436 QSKLDLFKQIFDQSINAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F + +++ HL++ +S+ + AI F V + + K+ + Sbjct: 496 SFEGE-FSILQQKLLAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSI----KKARLVY 550 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L +N +RG K QL+V Sbjct: 551 RLDINEFRGEKSLQLKVEYLK 571 >gi|119505214|ref|ZP_01627289.1| single-stranded-DNA-specific exonuclease RecJ [marine gamma proteobacterium HTCC2080] gi|119458905|gb|EAW40005.1| single-stranded-DNA-specific exonuclease RecJ [marine gamma proteobacterium HTCC2080] Length = 575 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 172/564 (30%), Positives = 276/564 (48%), Gaps = 20/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ NR V+ ++ +++ L+P P L +AA + AI +++I Sbjct: 20 GLSPLMQRLYANRGVTTADE---IDLALKGLLP-PQQLRGVAEAAELLADAIEGEARVVI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL + L + + +P+R GYG +P ++ LI+TV Sbjct: 76 VGDFDADGATSSALAVSVLRQMGLKEVSYLVPNRFEYGYGLSPEIVALAAEREPDLIVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A GI V++ DHH E A +VNPN+ L GV+F Sbjct: 136 DNGISSLAGVATAQGLGISVLITDHHLPGDELPAADVIVNPNQPGCPFPSKSLAGVGVMF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL + LR +L LDLVAL T+ DVV L NR V GL R Sbjct: 196 YVLTALRAELRDREWFERCGMAMPNLGDALDLVALGTIADVVSLDRNNRILVAAGLARIR 255 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 +G PG+ AL+E S S +++ +LG+++GP +NA GR+ + +G L+++ + E Sbjct: 256 AGRGRPGIDALLEVAGRSASELSSSDLGFILGPRLNAAGRLEDMAIGIECLLAESAFEAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAAR 389 LA +LD LN+ RR +ES M E+A +++ D + V +H G+VG++AAR Sbjct: 316 PLAQQLDDLNRERRDIESNMQEEALSQLSALEVDDKTLKFGLCVYNKTFHQGVVGIVAAR 375 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 L+E++ RP+ + D + GSGRSI G I ++ + ++ K GGHAMAAGL+ Sbjct: 376 LRERYHRPTIVFADAGDDELKGSGRSIPGVHIRDVLDHVATMHPDLIGKFGGHAMAAGLS 435 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + R + + + F + + PV DG L + + +M+ +AGP+G P Sbjct: 436 LGRKDLDQFQEAFDTAVAVALEHVPPEPVVMTDGELALEDLTLNSAEMIAAAGPWGQHFP 495 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 PVF + R++ HL+ E+ E +AIAF V + + R+ + Sbjct: 496 EPVFEG-VFAIVEQRLLKDKHLKFRLEA-GGEKFEAIAFNVDRECWPDDQIS----RVRI 549 Query: 568 TGHLCVNYWRGSKRCQLRVLDASP 591 +N +RG + QL + P Sbjct: 550 AFQPDINTYRGERNLQLMIRHLWP 573 >gi|313891968|ref|ZP_07825569.1| single-stranded-DNA-specific exonuclease RecJ [Dialister microaerophilus UPII 345-E] gi|313119611|gb|EFR42802.1| single-stranded-DNA-specific exonuclease RecJ [Dialister microaerophilus UPII 345-E] Length = 663 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 168/587 (28%), Positives = 286/587 (48%), Gaps = 31/587 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDP 72 S ++W + + +K I D +AR+++ R ++ + FL+ S+ L +P Sbjct: 2 SKYKWNLEEKNKEVAVIPDFFKKENISDALARIMIRRGINSEDILIPFLHGSLNEL-ENP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ A RI+ AI +E I+IFGDYDVDG S +++ RF + VN YIPDR Sbjct: 61 FVMKGMKSAVDRILIAINKNENIVIFGDYDVDGITSTSILYRFFKNLGVNVGYYIPDRET 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + L+ITVDCG + + ++ IDVIV DHH E Sbjct: 121 EGYGPNVNAINNLAK-KYDLLITVDCGIAATKIFK-EASKDIDVIVTDHHMPPDELPDVI 178 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 ++++P++ D + GV + + IY + ++LVAL T+ D Sbjct: 179 SVIDPHQKDCEYHFSEMAGCGVAYSLCRAIYLKKFNKDYFND-------IELVALGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALI--------ERVNISSPITAENLGYMIGPS 304 VV L NR +V +GL N GLKAL+ N I +EN+ ++I P Sbjct: 232 VVSLTDENRIFVKEGLKRLINTENKGLKALLYETGILKENEENQKKMIRSENISFIIAPR 291 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GRI + +G LL S + E + LA KL +N R+ +E + A+ V + D Sbjct: 292 LNAAGRINHAKIGVELLTSTNDCEAKELAKKLCEINSERQKIEREIYGYAQDIVKKK--D 349 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + + IV+ G+ WHPG++G++A+RL + + +PSF IS ++ G G GS RSI GF+I + Sbjct: 350 LSKEKTIVIAGENWHPGVIGIVASRLLDTYNKPSFVISIKD-GVGKGSCRSIPGFNIYEA 408 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + IL++ GGH MAAG +++ N + K+ + + P+ +I+ ++ Sbjct: 409 LKA--HSDILLQFGGHKMAAGFSIKEENIKLFEERMIKYTNEKITDEDCIPILEIEENIS 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQA 543 + + + I L+ P+G NP P+F + R + + F + +++ ++ Sbjct: 467 LNEITLDFIRSLDILEPFGCDNPKPLFLSKEILVNKTRRIGNENKHFKFSTFNNKEEIEG 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + ++G+ + V ++ W G + QL D Sbjct: 527 VFWNYENNSFC-----NQGQLIDVVYEPEIHNWYG-EHVQLNCKDIE 567 >gi|323694416|ref|ZP_08108587.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium symbiosum WAL-14673] gi|323501497|gb|EGB17388.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium symbiosum WAL-14673] Length = 569 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 168/579 (29%), Positives = 283/579 (48%), Gaps = 29/579 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76 W+ + NR I ++ I + AR++ NR + + +LN ++ L DP ++ Sbjct: 6 WMVQTKKADFNR---IAERFGIDPVTARIIRNRGIEGEDRINLYLNGTVGTLY-DPRLMK 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +KAA + I ++I I GDYD+DG S ++ + + IPDRI DGYG Sbjct: 62 DMEKAAAILKDKIDRKKRIRIVGDYDIDGVCSTYILYKAFLRLGAPVDYDIPDRIRDGYG 121 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-----SEEIPA 191 N S++EK +G I+T D G ++Y ++ A +G+ V++ DHH+V PA Sbjct: 122 INESIIEKAAEQGIDTILTCDNGISAYSQIELAKKKGMTVVITDHHEVPLEEGKEIIPPA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+++P R + +C A V + ++ +++ + LL+ A+ATV Sbjct: 182 DAVIDPKREECSYPFPEICGAVVAWKLVQVLFAECGV-----PAKEWEELLEFAAIATVG 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 DV+ L NR V GL + GL+ L + N+ S ITA ++G++IGP +NAGGR Sbjct: 237 DVMRLQDENRIIVKYGLSRMEHTSSIGLRKLAAKNNLDLSQITAYHIGFVIGPCLNAGGR 296 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + L LL+S D +E + LA +L LN R+ M E A +V T Q V Sbjct: 297 LQTAKLALSLLLSGDEEEADRLATELKELNDMRKDMTEQGTEAARLQVDTY---YSQDKV 353 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV H + G++A RL+E + +PS ++ E+ GSGRSIE + + + Sbjct: 354 LVVYLPECHESLAGIIAGRLREHYQKPSIVLTKGEEAV-KGSGRSIESYHM--FQKLSEV 410 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +++K GGH MAAGL++E N G + + + ID + + + Sbjct: 411 KELMLKFGGHPMAAGLSLEEKNIGEFRRQLNE--RSGLREEDFKAKVWIDVPMPVNYMTE 468 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRV 548 LI P+G GN P+FA N ++++ RV+ +++T E ++ ++AI F Sbjct: 469 RLIREFRCLEPFGQGNEKPLFAQKNLRVRNSRVIGRNRNVVRLTLEEENGFAMEAIYF-- 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 G + + + M + + +N + G+K Q V Sbjct: 527 -GDGIAFEDERGGRRVMDIVYYPEINEYNGNKSLQAVVR 564 >gi|56752218|ref|YP_172919.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus PCC 6301] gi|56687177|dbj|BAD80399.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus PCC 6301] Length = 643 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 168/568 (29%), Positives = 283/568 (49%), Gaps = 23/568 (4%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIY 90 + +P ++A+VL+NR + +I A+D+L P + L PDP D ++ + +AI Sbjct: 2 LATALNLPPVLAQVLINRGLGAIADARDYLKPEQQEL-PDPREEFEDLVESVLLLEKAIR 60 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 + ++I I GDYD DG S AL++R A IP R+ +GYG N ++E+F G Sbjct: 61 SGDRIAICGDYDADGMTSTALLLRTFRQLGAKAEYAIPSRMQEGYGINERIVEEFAASGV 120 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 ++++TVD G +Y + A G+ VIV DHH + E PA A++NP L + S L Sbjct: 121 RVVLTVDNGIAAYQPIARARELGLTVIVTDHHDLPPELPPANAILNPKLLPEESPYHGLA 180 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 GV +++ + + + + LL+L L T+ D+ PL G+NR ++ +GL + Sbjct: 181 GVGVAYVLALCVAEQFNRQ-----AELIRPLLELYTLGTIADLAPLTGVNRRWLQRGLRL 235 Query: 271 ARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 + G++AL+E + + E++G+ +GP INA GRIG+ + LL ++D Sbjct: 236 LPQSQLVGVQALMEAAGVKTSDRSLKPEDIGFKLGPRINAIGRIGDPQVVIELLTTEDRD 295 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 + LA +V NQ RR + + E+A A V + D +Q +V+V+ WH G++G++A Sbjct: 296 RAQELAGICEVTNQERRGLCDRITEEAIAIVEAEGFDNRQTAVLVLAQPNWHHGVIGIVA 355 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447 +RL E++G P F S+EEDG GS R FD+ + +L + GGH A G + Sbjct: 356 SRLVERYGVPVFISSYEEDGHLRGSARGTPEFDVFAALEHC--RDVLGRFGGHRAAGGFS 413 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + N + FA + +P P +ID L + ++ L + + P+G N Sbjct: 414 LSAENLSAWRSRLEAFAADCLPVDCRRPAIQIDAELPIALASLNLFEQQQQLQPFGIAND 473 Query: 508 NPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P++ N + R + HL++T S+ + A+ +R P+ E R+ Sbjct: 474 EPLYWAKNLAILDQRRMGNGQEHLKLTLSDGQSK-VTAVYWRWGDRPVPE-------DRV 525 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVE 593 V +L N W + QL + + Sbjct: 526 DVAYYLRENIWNDRRELQLEIAGIRLSQ 553 >gi|317502039|ref|ZP_07960221.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 8_1_57FAA] gi|331090445|ref|ZP_08339326.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 3_1_46FAA] gi|316896513|gb|EFV18602.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 8_1_57FAA] gi|330401192|gb|EGG80785.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 3_1_46FAA] Length = 572 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 288/584 (49%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW ++ + + A K+ I ++AR++ NR++ + +LN +I L D +++ Sbjct: 3 RWYVMMKKADFSSIGA---KYNISPVIARLIRNRDIIEDEEINLYLNGTIADLY-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I + + + GDYD+DG + ++ L + + IPDRI DGY Sbjct: 59 KDMDKAVEILSEKIREEKPVRVIGDYDIDGVNAAYILKEGLEGLGADVDTDIPDRIKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N L+++ +++G IIT D G + + + Y G+ VIV DHHQV EI Sbjct: 119 GLNKMLIDRALDDGIDTIITCDNGIAAAEEITYGRKNGLTVIVTDHHQVPFVEINKEREY 178 Query: 192 -----YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A+V+P R D +LC A V + ++ +Y ++ +D D+ L++ VA Sbjct: 179 LLPQADAVVDPRRPDCEYPFKNLCGAAVAYKLVEALYNVMLRD-----PEDVDYLMENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 +ATV DV+ L G NR +V +GL + +R N GLKALIE I+ + +LG+++GP I Sbjct: 234 IATVGDVMALKGENRIFVKQGLEMLKRTKNEGLKALIECTGINPEYLNTYDLGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + ++ MLA L LN +R+ M +++A + + + Sbjct: 294 NASGRLDTAKRALELLSTRTRRDAVMLAEDLKALNDSRKEMTERGIKEAAEMI--ETTSL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V V+ H I G++A ++++++ RP+ ++ EDG GSGRS E +D+ Sbjct: 352 KEDKVFVIYLPDCHESIAGIIAGKIRDRYYRPTIILTKAEDGV-KGSGRSTEEYDM--FT 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + K GGH AAG++++ N R + + ID + Sbjct: 409 ELCKCQALFTKFGGHRQAAGVSLKEENVQRFRETINSLC--TLTEEDLQMKVYIDMQVPF 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 + LI+ + P+G GN P+FA + K+ ++V LQ E + ++A Sbjct: 467 PYLTEDLIEQFQVMEPFGKGNKRPLFAEKDLKVIQPKIVGKNENVLQCILEDKQGNRMKA 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F T L E L GK VT +N + G + QL ++ Sbjct: 527 VYFGDVKTCLKEMLA---GKVTAVTYFPSINEYMGRRSIQLTIV 567 >gi|110806795|ref|YP_690315.1| ssDNA exonuclease RecJ [Shigella flexneri 5 str. 8401] gi|110616343|gb|ABF05010.1| Single-stranded-DNA-specific exonuclease recJ [Shigella flexneri 5 str. 8401] Length = 530 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 169/530 (31%), Positives = 267/530 (50%), Gaps = 16/530 (3%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132 L+ +KA + A +I++ GD+D DGA S AL + + N + +P+R Sbjct: 6 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 65 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYG +P ++++ GAQLI+TVD G +S+ +++A + GI VIV DHH A Sbjct: 66 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 125 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248 A++NPN D L GV F +++ + LR +L LLDLVAL Sbjct: 126 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALG 185 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306 TV DVVPL NR +G+ R + PG+KAL+E N + A +LG+ +GP +N Sbjct: 186 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 245 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDI 365 A GR+ + ++G LL+ D+ E +LA +LD LNQ R+ +E M +A + Sbjct: 246 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRD 305 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + + WH G+VG+LA+R+KE+F RP A + DG GSGRSI+G + + Sbjct: 306 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 365 Query: 426 SFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 G+++K GGHAMAAGL++E F F + + + DG L Sbjct: 366 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPL 425 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQ 542 + + + + + +L AGP+G P P+F + +L R+V HL++ E L Sbjct: 426 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 484 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF V + + + + + L +N +RG++ Q+ + + P+ Sbjct: 485 GIAFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 530 >gi|330991943|ref|ZP_08315892.1| Single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter sp. SXCC-1] gi|329760964|gb|EGG77459.1| Single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter sp. SXCC-1] Length = 589 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 219/593 (36%), Positives = 320/593 (53%), Gaps = 12/593 (2%) Query: 9 VECSISGFRWVSLL---GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI 65 + CS++G +W +AI Q+ +P+IV R+L R ++ + +L P++ Sbjct: 1 MTCSVTGRQWHWRAGGQASHTDRMGMAIAQQANLPEIVGRMLALRGIAPEQVGTYLTPTL 60 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 LMP+P L D D AA R+ +A+ + E + +FGDYDVDGA S AL+ FL Sbjct: 61 NDLMPNPSTLVDMDAAADRLARAVSSGETVGLFGDYDVDGACSTALLATFLQEQGCTVLT 120 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 +IPDR+ +GYGPN + ++GA LII +DCG+ + D L++A + D+I++DHHQV+ Sbjct: 121 HIPDRMTEGYGPNTPAIAAMQDKGASLIICLDCGTAAVDVLEHAGQR-SDIIILDHHQVQ 179 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLD 243 A VNPNR D S LCAA V F+ +V R LR DL + +D Sbjct: 180 GPLPEVVATVNPNRPDCPSRLHGLCAAAVTFMTIVATRRALRAAGWFDTRPMPDLWACMD 239 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 LVALATVCDV+PL GLNRA+V +GL + R+ GL AL+E P++A G+ +GP Sbjct: 240 LVALATVCDVMPLRGLNRAFVTQGLRIMGRRKRVGLAALLEVAGARDPLSAFTCGFAVGP 299 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INAGGRI +S LG RLL+ D E +LA +L+ +N NR+ +ES +L++A Q Sbjct: 300 RINAGGRIADSGLGLRLLLCTDPAEARVLAERLNSVNHNRQSVESGILDRAMELAAAQRA 359 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 Q +V+V+ G WHPG+VG++A R+KEKF RP + EDG GS RS+ G D+G Sbjct: 360 --QGNAVLVLSGRDWHPGVVGIVAGRIKEKFNRPVLVGAEMEDGSVKGSARSVPGQDLGG 417 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + A + G+L GGGHAMAAG + L +F L ID V+ Sbjct: 418 AIIAARQAGLLSTGGGHAMAAGFGLPAAGVPALQEFLNHHLATA-ADLPDAVDLTIDAVV 476 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SET 540 N +A + L ++ P+G GN P+ A P ++ + L++T E + Sbjct: 477 NVAAATVELAADMDRLAPFGTGNDEPLIALPRVRVAYAERIGSEGNTLRLTLEGEGRGPR 536 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L+A+ FR +PL L G +H+ G L W+G + D + + Sbjct: 537 LKALVFRANESPLATVLEDRDGPPLHLAGWLRAESWKGRTSATFFIRDVAVAQ 589 >gi|300768229|ref|ZP_07078134.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494293|gb|EFK29456.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 777 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 176/590 (29%), Positives = 283/590 (47%), Gaps = 26/590 (4%) Query: 16 FRWVSLLGQE-GINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 +WV L + + ++ +VAR+L+ R + + + A FL+ + L+ DP Sbjct: 6 KKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLL-DPT 64 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D +KA RI +AI ++I I+GDYD DG S ++M L N N YIPDR D Sbjct: 65 NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPDRFKD 124 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + ++ I G +L +TVD G + QGIDV+V DHH++ +E AYA Sbjct: 125 GYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + G L AGV F V + + ++ A+ TV D+ Sbjct: 185 IVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL-----------AAIGTVADL 233 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 V L G NR V GL V ++ PGL ALI+ I +T N+G+ I P +NA GR+ Sbjct: 234 VSLTGENRTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQ 293 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL + D + LA +++ LN+ R+ + + A + Q + + +V Sbjct: 294 SAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQA--QTPENEARQTLV 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + G WH G++G++A+ + E G+P+ ++ ++DG+ GSGRS+E +++ + E Sbjct: 352 ITGHGWHEGVLGIVASHVVETSGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE-- 409 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LV GGH MA GLTV L + + A + IDG L + +A Sbjct: 410 SLVAFGGHHMAVGLTVMADQLATLKEAMEAAAGQQLADNAQV-SLPIDGTLPLAEATLAT 468 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + +++ P+G NP P+F + R + HL++ + T+ AI F + G Sbjct: 469 LADIQALAPFGTDNPAPLFELVPTTVPQARAIGSDQQHLKLQLGD-GTNTIDAIGFSM-G 526 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 T L Q+ + + G L N W G + Q+ V D + + Sbjct: 527 TALPAI--QASPTDVTLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDAR 574 >gi|153816125|ref|ZP_01968793.1| hypothetical protein RUMTOR_02373 [Ruminococcus torques ATCC 27756] gi|145846610|gb|EDK23528.1| hypothetical protein RUMTOR_02373 [Ruminococcus torques ATCC 27756] Length = 582 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 288/584 (49%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW ++ + + A K+ I ++AR++ NR++ + +LN +I L D +++ Sbjct: 13 RWYVMMKKADFSSIGA---KYNISPVIARLIRNRDIIEDEEINLYLNGTIADLY-DGMLM 68 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I + + + GDYD+DG + ++ L + + IPDRI DGY Sbjct: 69 KDMDKAVEILSEKIREEKPVRVIGDYDIDGVNAAYILKEGLEGLGADVDTDIPDRIKDGY 128 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N L+++ +++G IIT D G + + + Y G+ VIV DHHQV EI Sbjct: 129 GLNKMLIDRALDDGIDTIITCDNGIAAAEEITYGRKNGLTVIVTDHHQVPFVEINKEREY 188 Query: 192 -----YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A+V+P R D +LC A V + ++ +Y ++ +D D+ L++ VA Sbjct: 189 LLPQADAVVDPRRPDCEYPFKNLCGAAVAYKLVEALYNVMLRD-----PEDVDYLMENVA 243 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 +ATV DV+ L G NR +V +GL + +R N GLKALIE I+ + +LG+++GP I Sbjct: 244 IATVGDVMALKGENRIFVKQGLEMLKRTKNEGLKALIECTGINPEYLNTYDLGFVLGPCI 303 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + ++ MLA L LN +R+ M +++A + + + Sbjct: 304 NASGRLDTAKRALELLSTRTRRDAVMLAEDLKALNDSRKEMTERGIKEAAEMI--ETTSL 361 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V V+ H I G++A ++++++ RP+ ++ EDG GSGRS E +D+ Sbjct: 362 KEDKVFVIYLPDCHESIAGIIAGKIRDRYYRPTIILTKAEDGV-KGSGRSTEEYDM--FT 418 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + K GGH AAG++++ N R + + ID + Sbjct: 419 ELCKCQALFTKFGGHRQAAGVSLKEENVQRFRETINSLC--TLTEEDLQMKVYIDMQVPF 476 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 + LI+ + P+G GN P+FA + K+ ++V LQ E + ++A Sbjct: 477 PYLTEDLIEQFQVMEPFGKGNKRPLFAEKDLKVIQPKIVGKNENVLQCILEDKQGNRMKA 536 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F T L E L GK VT +N + G + QL ++ Sbjct: 537 VYFGDVKTCLKEMLA---GKVTAVTYFPSINEYMGRRSIQLTIV 577 >gi|307826207|ref|ZP_07656417.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacter tundripaludum SV96] gi|307732741|gb|EFO03608.1| single-stranded-DNA-specific exonuclease RecJ [Methylobacter tundripaludum SV96] Length = 581 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 171/566 (30%), Positives = 282/566 (49%), Gaps = 22/566 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ + R ++ L+ ++ L P P +L+ ++ ++ AI ++I I Sbjct: 26 HPVLERIFLARGLTS---TAELDRTLAKL-PSPWLLSGMEEMVGHLITAINEQQRICIVA 81 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S A+ ++ L +P+R GYG P +++ + +IITVD Sbjct: 82 DFDADGATSCAVAIKGLKLLGAGEVTFVVPNRFEYGYGLTPEIVDLVKLQNPDVIITVDN 141 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S + ++ A + GI V++ DHH E A A+VNPN +DD G L GV+F V Sbjct: 142 GISSMEGVRVAKDLGIKVLITDHHLPAHELPIADAIVNPNLVDDKFPSGALAGVGVIFYV 201 Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-R 273 L+ + LR+ N N +L LLD VAL TV DVV L +NR V +GL+ R R Sbjct: 202 LMALRSRLREKNWFEKNQLQEPNLAQLLDYVALGTVADVVALDQINRVLVHQGLLRIRTR 261 Query: 274 QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + +PG+ ALIE I A +LG+ +GP +NA GR+ + +LG + L+++D + + Sbjct: 262 RSHPGINALIEVSGRKPESIFASDLGFALGPRLNAAGRMDDMSLGIQCLLTEDPLLAKEM 321 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKV--LTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 A++LD LN +RR +E M +A A + + + D+ + + + WH G++G+LA+R+ Sbjct: 322 ALQLDELNNDRREVEGQMKNEAMALLGEMKKLDEHHLPAGVCLFDSSWHQGVIGILASRI 381 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTV 448 K++ RP A + + GS RSI G I ++S A +L K GGHAMAAG+++ Sbjct: 382 KDQLHRPVIAFAPAGKDEIKGSARSIPGVHIRDVLSDIAAAHPKLLSKFGGHAMAAGMSL 441 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + ++ F + + DG L + I D+L++AG +G P Sbjct: 442 KMHDYPPFALAFDALVRKRLVTIDLEQKIYSDGELTEQEMTIEFADLLQNAGTWGQEFPE 501 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 PVF + R+V HL++ + + AIAF V L + + Sbjct: 502 PVFDG-VFDVIQSRIVGQRHLKLVLRKPFGDLLIDAIAFYVDKPESWLGL-----RHIKA 555 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPVE 593 L +N +RG++ Q V + Sbjct: 556 AYKLDINEFRGNRSVQFIVQYLEKIT 581 >gi|194337227|ref|YP_002019021.1| single-stranded-DNA-specific exonuclease RecJ [Pelodictyon phaeoclathratiforme BU-1] gi|194309704|gb|ACF44404.1| single-stranded-DNA-specific exonuclease RecJ [Pelodictyon phaeoclathratiforme BU-1] Length = 573 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 164/583 (28%), Positives = 265/583 (45%), Gaps = 19/583 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 FRW L E L +++ + VAR L NR + + D A+D+ SI L L+ Sbjct: 4 FRWNLLSPDE--QAVLVLSEAINVSLPVARALFNRGIQTFDEARDYFRSSILSLPSPYLL 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L KA R+VQAI + EKIM++GDYDVDG AL++ FL + YI DR +G Sbjct: 62 LH-MRKAVDRVVQAIRDHEKIMLYGDYDVDGTTGTALLLLFLKEQGALVSYYINDRFTEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ + + L++TVDCG +A+ GIDVI+ DHH+ AYA+ Sbjct: 121 YGLSAEGIDTAVEQEVTLLVTVDCGINENEAVLRCAAHGIDVIICDHHE-PDVLPLAYAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV F + I LD VA+AT D+V Sbjct: 180 LNPKVPGCTYPFRELCGCGVAFKFIQAIAEH-----VHAEPESWQKYLDFVAIATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + L A+ + I+ + ++ + I P INA GR+ Sbjct: 235 SLEQENRTLVREGLQRMRTKPRTNLMAMFSLMKIAPAELGMFHIAFGIAPRINAAGRMHS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++L L+SD S + + +LD +N RR +++ ++ +AE + + S IV+ Sbjct: 295 AHLAVEWLLSDTSVDAQRHVDELDRINSLRREIDADIMGKAEKMLDSHFASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+++ EK P+ + G GS RS+EG +I + + Sbjct: 353 YDESWHIGVLGIVASKMIEKHYLPTVILGGMN-GLIKGSVRSVEGLNIYEALQEC--GDY 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG+T+ NF F + ++ +D + + I Sbjct: 410 LEQFGGHHQAAGITLRPENFAGFRKKFNEVCSTLLSIGQRQKELVVDSKIALEDITSRFI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPN-HKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++LE PYG GN P+F R++ H++ T ++ T I F Sbjct: 470 NVLEQFAPYGHGNREPLFLSEGIVPYGQPRLLKERHVKFTVRDKNGRTFDVIGFDRLD-- 527 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + L + + + W ++ Q+++ D + H Sbjct: 528 IYTELKEHSRPVFTMVYSVEKRMWNNREQWQIKLKDLELTKRH 570 >gi|289432757|ref|YP_003462630.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp. GT] gi|288946477|gb|ADC74174.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp. GT] Length = 566 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 29/579 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W Q P +++R+L NR ++ + A FL+P + L DP + Sbjct: 9 WKLKPALP-----EETGQNFPYPPLISRLLYNRGITTIEAADLFLSPD-KRLNHDPFLFP 62 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D + A RI +A+ EKI+++GD+D DG + A++ ++ N YIP RI +GYG Sbjct: 63 DMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRITEGYG 122 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 S +EK EG L+I+ DCG T+ ++ A G+DVIV DHH E PAYA++N Sbjct: 123 LKISALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P L GV + ++ +YR L ++++ LLDLVA+ TV D+VP+ Sbjct: 183 PKMPCSTYPFKELAGVGVAYKLIQALYRNLGREDEAK------DLLDLVAIGTVADIVPI 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 + NR V +G+ + + PGL + + I E++ +++ P +NA GR+ + Sbjct: 237 LDENRYLVKEGVKLLNAEPRPGLIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHAM 296 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G +LL + + + LA+ L+ N R+ + +E+A A + TQ ++++ Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQF----PPALLIFSD 352 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 GI GL+A RL +++ RPS I GS RSI F+I + + + Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALNHFAHLFS 409 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGHA AAG T+ N +A I+ + P ID + S + A + Sbjct: 410 HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSGMELKPFIDIDIDTDLSLLCPATLRE 469 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 LE P+G NP PVF + R + HL++ + + +AFR Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQA---- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L + + +L ++ W G+ +L+++D +P Sbjct: 525 -KELSSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAPS 562 >gi|324991634|gb|EGC23567.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sanguinis SK353] Length = 740 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 174/592 (29%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + L +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQF-ATNFTDEKFLKQAKKAGLESAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQDISLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P HL GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAVVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + ++ V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTMLDSK------RPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FDALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D + + L V +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELRLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ + R + +HL++ +D + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNARTMGAGNSHLKLKISKED-AAFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|270308235|ref|YP_003330293.1| single-stranded-DNA-specific exonuclease [Dehalococcoides sp. VS] gi|270154127|gb|ACZ61965.1| single-stranded-DNA-specific exonuclease [Dehalococcoides sp. VS] Length = 566 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 162/579 (27%), Positives = 275/579 (47%), Gaps = 29/579 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W +Q P +++R+L NR + +++ A+ FL+ R L +P + Sbjct: 9 WKLKPAPP-----EKTSQNFPYPPLISRLLHNRGIETVEEAELFLSSD-RRLNHNPFLFP 62 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +KA RI +A+ EKI+++GD+D DG + A++ ++ N YIP R+ +GYG Sbjct: 63 DMEKAVSRIYKALLTGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRVTEGYG 122 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 S +EK EG LII+ DCG T+ ++ A G+DVIV DHH E PAYA++N Sbjct: 123 LKISALEKHRTEGVSLIISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + L GV + ++ +YR L ++++ LLDLVA+ T+ D+VP+ Sbjct: 183 PKVPGETYPFKELAGVGVAYKLIQALYRNLGREDET------RDLLDLVAIGTIADIVPI 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 + NR V +G+ + + PG+ + + I E++ +++ P +NA GR+ + Sbjct: 237 LNENRYLVKEGIKLLNAEPRPGIIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLQHAL 296 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G +LL + + + LA+ L+ N R+ + +E+A A++ TQ ++++ Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVHFVEKARARLDTQFL----PALLIFID 352 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 GI GL+A RL +++ RPS I GS RSI F+I + + + + Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALSRFAHLFS 409 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGHA AAG T+ N +A + + P ID + S + A + Sbjct: 410 HFGGHAQAAGFTLPIENLDAFAQGISAYAEETLSGVELKPFIDIDIDTDLSVLCPATLRE 469 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 LE P+G NP PVF + R + HL++ + + +AFR Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQAKELN 528 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G + + +L + W G+ +L+++D SP Sbjct: 529 GFLQ-----SPVDIVYNLEQDKWCGTDTLRLKIIDMSPA 562 >gi|300312092|ref|YP_003776184.1| single-stranded-DNA-specific exonuclease [Herbaspirillum seropedicae SmR1] gi|300074877|gb|ADJ64276.1| single-stranded-DNA-specific exonuclease protein [Herbaspirillum seropedicae SmR1] Length = 564 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 171/574 (29%), Positives = 263/574 (45%), Gaps = 26/574 (4%) Query: 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 + +A + + + ++ARV R +S L + L+ P L D AA + Sbjct: 10 DLVQAEQLINE-GVHPVLARVYAARGLSSA---RELASELNALIA-PSGLLHIDAAASYL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 AI +K++I DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 65 ADAIAARKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEIVELT 124 Query: 146 -INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 + +I+TVD G S D + A +GIDV+V DHH A +VNPN+ Sbjct: 125 VREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPQARVIVNPNQPQCGF 184 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 +L GV+F VL+ + +R+ L SLLDLVAL TV DVV L NR Sbjct: 185 PSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDANNRI 244 Query: 263 YVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R A + T +LG+ +GP +NA GR+ + +LG Sbjct: 245 LVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSLGIEC 304 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L +DD +A +LD +N+ RR +E+ M + A + + I V WH Sbjct: 305 LTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDD--YNPADRRTIAVFDPSWHQ 362 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 G++G++A+RLK+KF RP+ + ++G GSGRSI GF + + ++ K G Sbjct: 363 GVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTKFG 422 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLT+ F F+ + + V + DGVL + ++ I +++ Sbjct: 423 GHAMAAGLTIHAEAFDAFSHAFEAVGRDWLTQNQLERVIETDGVLEDAYYSVEFITLMDQ 482 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 +G G PVF + ++ + R++ HL++ E +D AI F Sbjct: 483 -QVWGQGFAPPVFC-DHFRVLNQRILKEKHLKLQLE-KDGRRYDAIWFGHTD-------- 531 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 S + V L N + G QL V A P Sbjct: 532 -SLPELAKVAFRLDANEYNGRTTVQLMVEHAEPA 564 >gi|73540776|ref|YP_295296.1| exonuclease RecJ [Ralstonia eutropha JMP134] gi|72118189|gb|AAZ60452.1| exonuclease RecJ [Ralstonia eutropha JMP134] Length = 565 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 167/561 (29%), Positives = 254/561 (45%), Gaps = 24/561 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + +AR+L R V L+ + L+P P + AA + AI ++++I Sbjct: 21 GLHPTLARILSARGV---AQPSELSTELPGLVP-PSAMKGIGHAAEYLADAIAAGKRLLI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ +R L +P+R GYG P ++ + +I+TVD Sbjct: 77 VADYDCDGATACAVGVRGLRMLGARVEYIVPNRFEYGYGLTPEIVALAAKQQPDVIVTVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S D + A GIDV+V DHH SE PA +VNPN+ +L GV+F Sbjct: 137 NGIASVDGVAAANAAGIDVVVTDHHLPGSELPPAAVIVNPNQPGCEFPSKNLAGVGVMFY 196 Query: 218 VLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR--R 273 VL+ + LR+ L +LLDLVAL TV DVV L NR V +GL R R Sbjct: 197 VLMALRAELRKRGVYTQQTQPPLQTLLDLVALGTVADVVKLDTNNRILVAQGLKRMRAGR 256 Query: 274 QGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 ++ +LG+ +GP +NA GR+ + +LG L++DD+ +A Sbjct: 257 MQPGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDANRAWEIA 316 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +LD +N+ RR +E+ M ++A + D + V D WH G++G++A+RLK Sbjct: 317 QELDGMNRERRDIEAGMQQEALQILEQPLAGPDPSSRFTVSVFNDTWHQGVIGIVASRLK 376 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 +KF RP+ + ++ GSGRSI GF + + G++VK GGHAMAAGLTV Sbjct: 377 DKFHRPTITFAPGDETTVKGSGRSIPGFHLRDALDLVSKRCPGMMVKFGGHAMAAGLTVH 436 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F + F+ + V + DG + + + +LE +G G P P Sbjct: 437 ADRFAEFQEAFEAVGKEWLSDEQLARVIETDGDIEDQCFSPEFVTLLEQ-QVWGQGFPAP 495 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F + V+ HL++ + + AI F G + Sbjct: 496 TFCGE-FDVLRQSVLKGKHLKLQL-GRGKQRFDAIWFNHADE---------LGASAQIAY 544 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L N + G R QL + A Sbjct: 545 RLDNNTFNGITRVQLVIEHAQ 565 >gi|114328064|ref|YP_745221.1| single-stranded-DNA-specific exonuclease recJ [Granulibacter bethesdensis CGDNIH1] gi|114316238|gb|ABI62298.1| single-stranded-DNA-specific exonuclease recJ [Granulibacter bethesdensis CGDNIH1] Length = 616 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 219/605 (36%), Positives = 320/605 (52%), Gaps = 19/605 (3%) Query: 2 NDQAFLGVECSISGFRWVSLLGQ-----EGINRALAITQKHAIPDIVARVLVNRNVSIDY 56 A LGVE S++G W + LAI+Q+H + D++ R++ R + ID Sbjct: 17 VTDAVLGVERSLTGRAWYWRMPAGADIAAIERLGLAISQRHGVSDLLGRLIATRGIGIDQ 76 Query: 57 AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL 116 A FL P++R LMPDP +L D+AA RI AI E I IFGDYDVDGA LM+ L Sbjct: 77 ADTFLQPTLRALMPDPSVLAGMDQAAARIAAAITARETIAIFGDYDVDGACGTTLMLTVL 136 Query: 117 SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176 C +IPDR+ +GYGPN + GA LII VDCG+ + AL + + D+ Sbjct: 137 RACGCPVLYHIPDRLREGYGPNAPALLSLAERGASLIICVDCGTAAQTALSAVSGR-ADI 195 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---P 233 +V+DHH+ + A A VNPN DD SG LCA GV L V +R LR + Sbjct: 196 LVLDHHKSDTLPPAALATVNPNGPDDRSGLTMLCATGVALLTCVATFRQLRLNGWQGHEG 255 Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293 DLL +LDLVALATVCDV+PL G+NRA+V +GL V R+ G+ AL+E ++ +T Sbjct: 256 PPPDLLEMLDLVALATVCDVMPLTGINRAFVTQGLKVMDRRNRIGIAALLEVAQMTGRVT 315 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 A G+++GP INA GRI +++G RLL + D +A LD +N R+ +ES++L+ Sbjct: 316 ASTCGFVLGPRINAAGRIDSADMGVRLLTATDPIAARDIAQALDSVNGRRQTVESSILDA 375 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 A + + + IV+ G+ WHPG+VG++A RL+E+F RP+ + DG GSG Sbjct: 376 AVREA--EARIEAGDAAIVIGGEDWHPGVVGIIAGRLRERFNRPACV-AGSADGLLKGSG 432 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RS+ G D+G + A + G+L GGGHAMAAG + + F + Sbjct: 433 RSVPGIDLGAAIIAAHQHGLLRSGGGHAMAAGFALPPESMPAFRTFMNERLAAAALLPKA 492 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQM 531 + D L A AV +A+ + L P+G GN P+ P + + + ++ Sbjct: 493 ADLAL-DASLGAGAVTVAMAEELAQLAPFGNGNDEPLLVLPRLRCRRAERIGRDGGTIRA 551 Query: 532 TFESQDSETLQAIAFRVYGT----PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 ES+ T++A+ FR P+ + L+ + +H+ G+L W G+ + Sbjct: 552 FLESESGYTIKALLFRAKPEDMAAPIADILLNRELRPLHLAGYLRAETWNGTTSANFCIS 611 Query: 588 DASPV 592 DA+ Sbjct: 612 DAALA 616 >gi|332981507|ref|YP_004462948.1| single-stranded-DNA-specific exonuclease RecJ [Mahella australiensis 50-1 BON] gi|332699185|gb|AEE96126.1| single-stranded-DNA-specific exonuclease RecJ [Mahella australiensis 50-1 BON] Length = 835 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 175/576 (30%), Positives = 274/576 (47%), Gaps = 26/576 (4%) Query: 23 GQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKA 81 + +++K + ++A++L R ++ + A FL+PS+ L DP L D D A Sbjct: 9 SNPDYDMIQNLSRKLNVSPLLAQLLWQRGITDEATAAAFLHPSLSQLH-DPYALPDMDVA 67 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 R I A+ + KI ++GDYDVDG S A+M+ L A Y+PDR +GYG N Sbjct: 68 VRCIKGAVQSGAKIAVYGDYDVDGITSSAIMLSILREMGAEAIPYLPDRFSEGYGLNSDA 127 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 + K ++G LIITVDCG T+ + ++ A GI V+V DHH E A A+VNP+R D Sbjct: 128 IYKLHDQGVGLIITVDCGITAVEEVKLAHELGIQVVVTDHHHCADELPDAQAVVNPHRPD 187 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 L GV F + + + + +D+ AL TV D+VPL+G NR Sbjct: 188 ATYPFASLAGVGVAFKLGCALIGL----------DAAMDYIDIAALGTVADIVPLVGENR 237 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIGESNLGS 318 V GL + G+KAL + + I E++ + + P +NA GR+ + G Sbjct: 238 VIVKYGLQRIKDNTRLGIKALWQAAGLKDDISCINTEHIAFQLAPRLNAAGRMSSAIKGL 297 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 LL+S D+ E LA LD N+ R+ +E ++++A + D+++ IV+ + W Sbjct: 298 TLLMSQDADETAALAKDLDADNRQRQSIERQIIQEAIGMI-DDTVDLRRDFAIVLAKEGW 356 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H G++G+ A +L E + RP I+ E G G GS RSI D+ + V G Sbjct: 357 HQGVIGIAAGKLAEMYHRPVLMIALSE-GMGHGSARSISSLDLY--QTLVQCRKYFVAFG 413 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHA AAG ++ + L +++ P+ D +N ++ A +D L Sbjct: 414 GHAQAAGFSILEEDINALRRKLNAILSDVLSPQDVMPLIHYDASINIEDISPAALDELSL 473 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G N P F + +R V AHL++ +QD L IAFR ++ Sbjct: 474 LEPFGDANEEPAFLISAASFKDMREVGADKAHLKLCL-TQDGIDLDCIAFRNGN----KY 528 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + V G L +N W G ++ QL+ P Sbjct: 529 QELCCCQGLDVIGSLGLNTWNGVQKVQLKAAHIRPS 564 >gi|197121723|ref|YP_002133674.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp. K] gi|196171572|gb|ACG72545.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter sp. K] Length = 573 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 202/589 (34%), Positives = 292/589 (49%), Gaps = 25/589 (4%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69 +G RWV LA + + ARVL R A+ FL + L Sbjct: 2 SGATGKRWVEAAVDAARAAQLAGA--LDLHPLAARVLTARGHADPAEAEAFLAARLADL- 58 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP + D A RIV+A+ E+I +GDYDVDG S AL+ FL + Y P Sbjct: 59 PDPFRMKGMDAAVERIVRALEGGERIACYGDYDVDGVTSTALLCGFLRAAGADVVTYTPH 118 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+V+GYG N + +G +L++T+DCG TS D ++ A G+D +V+DHH V E Sbjct: 119 RLVEGYGLNGDAVRSLAGQGVRLLVTLDCGITSVDEVRVAAGLGLDTVVVDHHTVPVELP 178 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVA 246 A A++NP++ L A GV F + + + R LR+ + +L LDLVA Sbjct: 179 AAAAILNPHQPGCGYPSKDLAAVGVTFALAMALRRRLRERGRFGPARPEPNLKEALDLVA 238 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304 L TV DVVPL+G NR V GL PG++AL +P+TA +G+ + P Sbjct: 239 LGTVADVVPLVGANRILVRWGLEQLATSRRPGVRALKRVAGIADGTPVTAGQVGFRLAPR 298 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++ G RLL+S D+ + LA +LD NQ R+ +E +LEQA A + Sbjct: 299 INAAGRLDDAGRGVRLLLSGDAAAAQALADELDRENQARQEIERRILEQALADAAARVAA 358 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V + D WH G+VG++A+R+ E+F RP+ I+ EDG G GSGRSIEGF + Sbjct: 359 GARGLV--LARDGWHAGVVGIVASRVVERFHRPAVLIA-LEDGAGKGSGRSIEGFHLYDA 415 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 ++ G L + GGH AAG+TVER F+ A + P +IDG + Sbjct: 416 LAAC--SGHLARFGGHRHAAGVTVERAQVEPFRAAFEAHAAATIADEDLVPRCRIDGWVG 473 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQA 543 + V + L GP+GAG+P PVFA ++ V AHL++ L A Sbjct: 474 DAEVTEDAAEALGRLGPFGAGHPEPVFALRGAAARARTVGAGGAHLKLAL----GRGLDA 529 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 I F + + G + + + W G++R QL++ D P Sbjct: 530 IGFGMGDR------APACGGPVDAAFTIGFDEWDGTRRLQLKLKDLRPA 572 >gi|325290219|ref|YP_004266400.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophobotulus glycolicus DSM 8271] gi|324965620|gb|ADY56399.1| single-stranded-DNA-specific exonuclease RecJ [Syntrophobotulus glycolicus DSM 8271] Length = 669 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 158/577 (27%), Positives = 270/577 (46%), Gaps = 24/577 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W + L I + +L R + S + DFL PS+ + P + Sbjct: 3 KVWQLQENSQTEYSGLDI----GLTATTLSILQKRGINSTEGILDFLRPSLLDVH-SPFL 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D RI +A N EKI+I+GDYDVDG S AL+ + ++A +YIP R +G Sbjct: 58 FQDMAAVISRIARAKENQEKILIYGDYDVDGITSTALLYKVFQKLGLDAYVYIPHR-SEG 116 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG ++EK +LI++VDCG T+ + + A GID I+ DHH+ ++E + A+ Sbjct: 117 YGIKKDVVEKAAQSAVKLIVSVDCGITAVEEVLLAAEIGIDFIITDHHEPQNELPASLAI 176 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP L GV + ++ + + Q + LDLVAL T+ DVV Sbjct: 177 INPKVPGSGYPFRELAGVGVAYKLVQALGQEFGQGAPADFCEC--AYLDLVALGTIADVV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR V GL + + GL+AL+ + A + +++ P INA GR+ Sbjct: 235 PLTGENRILVASGLRQMKNTIHTGLRALLAECGLAARVPKAGQIAFIVAPRINAAGRLDT 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL+ ++ +E LA +L N +R+ ++ +L +AE + + Q VIV+ Sbjct: 295 AKAALNLLLEENDEEALALAAQLSRENAHRQDVQGKILAEAEEMLDQE----QLPDVIVL 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A++L E++ RP F I+ + G G GS R I G+ + + + G+ Sbjct: 351 SSPDWHHGVIGIVASKLVERYYRPVFIIAEAD-GVGKGSARGISGYHV--LKELQEQAGL 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAG T+ N L + + + + +D + +++ L Sbjct: 408 LTHFGGHQQAAGFTLPIENIALLRKALNEGICS-LGGELFKQKVAVDSEIMMEEIDLGLF 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 +E P+G GNP P+F ++ V HL++ E+ ++A+AF + + Sbjct: 467 AEIEQLAPFGMGNPAPLFVTKGVNIREACTVGKEKKHLKLRLEAAKQSVIEAMAFNIGES 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 + + + ++ N + G ++ Q+ + D Sbjct: 527 ----LESFQTAQTVDLVYNIDKNEYLGREKIQISIRD 559 >gi|312875796|ref|ZP_07735786.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor lactoaceticus 6A] gi|311797277|gb|EFR13616.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor lactoaceticus 6A] Length = 798 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 173/577 (29%), Positives = 299/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW+ N + I + I + +VL NR V + + FLNPS++ L +P + Sbjct: 6 KRWILKDNNNFENMDIEIDGR-KIKPQIIKVLNNRGVQEKEEIERFLNPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L+D +A + I +AI + +++I+GDYD DG S L+ L + + + YIP+R DG Sbjct: 64 LSDMKEAVKIIHEAILHKSRVLIYGDYDCDGVTSTYLLYSTLRNF-LPTSYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + + L+ITVD G ++ + ++Y +G VI+ DHH+ K A A+ Sbjct: 123 YGLNLDVLKK-LEDKFDLLITVDTGISAQNEVKYLKEKGKKVIITDHHEPKEVLPDADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D + L GV F +L + LN L LD+VA+ T+ DV+ Sbjct: 182 INPKRKDSVYPFRDLAGVGVAFKLLHAL-------KSSGLNLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR + GL V + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRIFAKFGLKVLKNTRNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ D+ + E +A +LD N+ R+ +E +++A++ + + I + + V Sbjct: 295 DANLAVSLLLEKDAIKAESIAKRLDEENRKRQEIEEKTIKEAQSLI-AKNKSILKKKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ + G GSGRSI+GF++ + + E Sbjct: 354 LSNGSWHAGVVGIASSKITEKYYRPSLLLTVADQGILKGSGRSIKGFNLFEALKSCSE-- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P ++D VL+ + ++ L Sbjct: 412 ILLKFGGHEYAAGLSLPVDNVEKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +D + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 VDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGEDNKYYKFFTGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + ++ Q ++D Sbjct: 527 LEDEDELISMKKVDIVCKLERNLFNSVRKNQFNIIDI 563 >gi|167771536|ref|ZP_02443589.1| hypothetical protein ANACOL_02906 [Anaerotruncus colihominis DSM 17241] gi|167666176|gb|EDS10306.1| hypothetical protein ANACOL_02906 [Anaerotruncus colihominis DSM 17241] Length = 685 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 183/577 (31%), Positives = 282/577 (48%), Gaps = 25/577 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 RW Q A + +P + R+L R A + FL + DP+ Sbjct: 4 KRWNIR--QADDEAARHAAKALGLPPLAVRILAGRGFDTQEAIRRFLTGDCA--LTDPMA 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D+A +RI +AI EKI ++GDYD DG S ++ +L + YIP R +G Sbjct: 60 LRDMDRAVKRIRRAIAEGEKIAVYGDYDCDGILSTVVLYSYLESAGADVCYYIPHRDREG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ ++G +L+ITVD G T+ D + +A + GIDV+V DHH+ + A A+ Sbjct: 120 YGLNREALQIIRDDGVRLVITVDNGITAVDEVAFAASIGIDVVVTDHHKPRDMLPQAVAV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P+RLDD SG +L GV F ++ + + L DL+A+ATV D+V Sbjct: 180 VDPHRLDDESGCEYLAGIGVAFKLICAL-------EGDDGDLMLEQYGDLIAVATVADIV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313 PLIG NR V +GL + N GL ALI + ++ EN+ Y I P IN+ GR Sbjct: 233 PLIGENRTIVRRGLESLQSTDNEGLAALIRVCGMADRQLSCENIAYGIVPRINSAGRFDC 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L S E E LA ++ LN+ RR +E ++ Q ++ Q +++ +IV+ Sbjct: 293 VDNAVELF-SGGCDEPETLAGDINSLNEKRRAVEDQIVRQIMNQLDAQTEEL-GRRIIVI 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G+VG++A+R+ E+FG+P S E GS RSIEGF I + + Sbjct: 351 HGEGWHHGVVGIVASRMVERFGKPCIVFS-VEGDVARGSARSIEGFSIIDAIDACSR--L 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGH AAGLTV N + +A + P + ID ++ + + I Sbjct: 408 LIRYGGHNQAAGLTVSMANLKAFKNAINDWAASHYPD-MPQQTINIDCAISPRQLTVEEI 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 L P+G+GN PVF + LQ I + H+++ F D A+ F + Sbjct: 467 APLSMLEPFGSGNEPPVFTIRSCVLQGIYAIGDGKHVRLRF-CGDGCVFYAVYFGMTQAN 525 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + G+ + + + VN W G +R ++V D Sbjct: 526 FPYTI----GETVDLAVTVDVNEWNGEQRVSVKVRDI 558 >gi|222528696|ref|YP_002572578.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor bescii DSM 6725] gi|222455543|gb|ACM59805.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor bescii DSM 6725] Length = 798 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 174/577 (30%), Positives = 295/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW+ + + I + I + +VL NR + + + FLNPS++ L +P + Sbjct: 6 KRWILKDNSNIEDMDIEIDGR-KIKPQIIKVLNNRGIQEKEEIEKFLNPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + I QAI +++I+GDYD DG S L+ L + + YIP+R DG Sbjct: 64 LPDMKEAVKIINQAILRKSRVLIYGDYDCDGVTSTYLLYSVLKNF-LPTIYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + + L+ITVD G ++ + ++Y +G VI+ DHH+ K A A+ Sbjct: 123 YGLNLDVLKK-LEDKFDLLITVDTGISAQNEVKYLKEKGKTVIITDHHEPKEVLPEADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D + L GV F +L + +N L LD+VA+ T+ DV+ Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR GL + + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVEENRVLAKFGLKILKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ D + E +A KLD N+ R+ +E +++A++ + + I + + V Sbjct: 295 DANLAVSLLLEQDIIKAESIAKKLDEENRKRQEIEEKTIKEAQSLI-NKNKGILRKKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ ++G GSGRSI+GF++ + + G Sbjct: 354 LSNGSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNC--AG 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P +ID VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEIDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + ++ Q +LD Sbjct: 527 LEDEDELISMKKVDIVCKLEKNLFNSVRKNQFNILDI 563 >gi|312869036|ref|ZP_07729213.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus oris PB013-T2-3] gi|311095462|gb|EFQ53729.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus oris PB013-T2-3] Length = 776 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 166/580 (28%), Positives = 272/580 (46%), Gaps = 28/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W + + + AI +A +L R + A+DFL PS+ + DP + Sbjct: 10 YNWQDQSAKVDQQVVQTLQDELAISKTMAVLLAERGIADAQAARDFLKPSLSAVH-DPRL 68 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D+A RI A+ N EKI ++GDYD DG S A+M L+ + + Y+PDR DG Sbjct: 69 LHDMDQAVERIETAVANGEKITVYGDYDADGITSTAVMYEALTGIGADVDYYVPDRFKDG 128 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ I G +LI+TVD G + ++ A QG+DV++ DHH++ +E A A+ Sbjct: 129 YGPNQAAYDRIIANGTKLIVTVDNGVSGKQVIESAIAQGVDVVITDHHELPAELPKATAI 188 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P L GV F ++ + + +LDL+A+ + DVV Sbjct: 189 VHPRYPGSSYPFPDLSGVGVAFKLVWALQEEFSE-----------EMLDLLAIGEIADVV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 + NRA + G+ R+ PGL ALI ++ +T + +G+ I P +NA GR+ Sbjct: 238 SVTDENRALISLGIQELRQGMRPGLHALISLAGVNESQLTDQEIGFTIAPRLNALGRVAN 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N G LL + D LA +++ NQ RR + ++ A+ + QQ V+V+ Sbjct: 298 ANAGVELLTTLDENRGRELAEQVEAANQERRQLVDDIMTTAKKQA--LSPANQQRPVLVL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEG 432 G WH G++G++A+R+ + G+P+ ED + SGRS+ GF++ + Sbjct: 356 AGHGWHQGVLGIVASRIMDDTGKPTIVAGINEDEEVAKASGRSLPGFNL--FQALDQHRD 413 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + GGH A GL++ G L + A + L V L Sbjct: 414 LFTAFGGHPAACGLSLPEEQLGTLQEALVAEAAEQGFTGKQKQPLAVATGLAVGDVTEQL 473 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 L+ GP+G GN PVF F + + +++ + HL+ Q L +AF Sbjct: 474 YQQLQQLGPFGPGNDQPVFLFRDVQPTNVKTMGKDNSHLKFNLSPQ----LAVVAFNQGN 529 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L+ +G + + L +N W+G ++ QL + D Sbjct: 530 LA---PLLAGQGTTVDMVAKLSINEWQGKRQVQLMLEDIQ 566 >gi|291278480|ref|YP_003495315.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans SSM1] gi|290753182|dbj|BAI79559.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans SSM1] Length = 582 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 178/584 (30%), Positives = 295/584 (50%), Gaps = 23/584 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 ++W+ + I + + K +P + L R + + D F N ++ L +P Sbjct: 11 YKWLI--EEVNIEKLFDLIDKWRLPLPIGVTLFKRGILTSDDLHAFFNTPLQSL-KNPFH 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KA RR+ +AI + EKI ++GDYDVDG S AL+ FL N YIP+RI +G Sbjct: 68 MKDMEKAVRRVYEAIISGEKICVYGDYDVDGVTSTALIYLFLKEVGANVGYYIPNRIEEG 127 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + G +L+ITVDCG T+ D +++A N G+DVI+ DHH+ A+++ Sbjct: 128 YGLNKEAINELRARGVELLITVDCGITALDEIKFAKNIGMDVIITDHHKPLESLPEAHSI 187 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDV 253 +NP + D HL GV F ++ + L +N +L LD+VAL T+ DV Sbjct: 188 LNPLQPGDEYKFKHLSGVGVAFKFIMALRYSLSLNNFFKDKIPNLKKYLDIVALGTIADV 247 Query: 254 VPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 VP++ NR +V GL V ++ GL+ L +++ I ++GY++ P INA GR+ Sbjct: 248 VPMVDENRIFVKHGLKVLSKKDVRIGLQELKRVTGLLNTNIEVSHVGYVLAPRINAVGRL 307 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GES+ G +LLI+ + E LA +LD+ N+ R+ ME +L K+ + + + + Sbjct: 308 GESDRGVKLLITKNKNEARWLAEELDIENRYRQEMEKKILNDTFNKI-EKLGLANKYAGM 366 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ DRWHPGI+G++A+R+ EK+ +P+ IS E+G G GS RSI F + + Sbjct: 367 VLFSDRWHPGIIGIVASRVAEKYNKPTIVIS-VENGIGKGSARSISDFHLYDCLQEL--S 423 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + +K GGH AAGL + + L F + ID ++ +N+ Sbjct: 424 DLFLKFGGHKYAAGLQLYERDIKVLQKRFHELVRKYRDVGSEKSSIVIDAIVEPKDINMD 483 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-----LAHLQMTFESQDSETLQAIAF 546 L++ +E P+G GNP PVF +++ + +H++ E +D + + + Sbjct: 484 LMNWIERMKPFGQGNPEPVFCLK--RVRKYQQFGFTGRDRSHVRGFVE-KDGYIFEIVGY 540 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + FL + + +N W G + L++ D Sbjct: 541 NMKEYKY--FLKNY--DKFDILFTPEINQWFGDRSILLKIKDFK 580 >gi|56478737|ref|YP_160326.1| exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease [Aromatoleum aromaticum EbN1] gi|56314780|emb|CAI09425.1| Exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease [Aromatoleum aromaticum EbN1] Length = 563 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 163/558 (29%), Positives = 263/558 (47%), Gaps = 24/558 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ R +S ++ L+ ++ L+P P L D+AA+ + AI +++I Sbjct: 21 GTHPLLARIYAARGISR---REELDYGLKGLLP-PGALRGTDEAAQLLADAIEAGARMVI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ +R L + +P+R GYG P+++E L+ITVD Sbjct: 77 VADYDCDGATACAVGVRALRAFGADVGYLVPNRFEYGYGLTPAIVELAARMEPDLLITVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + + A + G+ ++ DHH A +VNPN+ L GV+F Sbjct: 137 NGIASVEGIAAARSYGMATLITDHHLPGDALPDADVIVNPNQPGCDFPSKALAGVGVMFY 196 Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQ 274 ++ + LR +L LLDLVAL TV DVV L NR V +GL + + Sbjct: 197 TMLALRAELRSRGAFSGRQEPNLGELLDLVALGTVADVVKLDHNNRILVAQGLARMRAGR 256 Query: 275 GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG++AL +LG+ +GP +NA GR+ + +LG LISDD +A Sbjct: 257 MQPGVRALFAAAGREFERANTFDLGFALGPRLNAAGRLSDMSLGIECLISDDMGRALNIA 316 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 LD LN+ RR +E M E A ++ D Q + + + WH G++G++A R+KEK Sbjct: 317 QDLDKLNRERRSIEQGMQEDALMRLA--GFDPGQTASVSLFEPDWHQGVIGIVAGRIKEK 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 RP A + DG+ GSGRSI + + ++++ GGHAMAAGLT+ Sbjct: 375 LHRPVVAFARGADGELKGSGRSIANVHLRDALDLVAKRHPDLILRFGGHAMAAGLTIRET 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 ++ R F++ ++V T + DGVL + + + ++E +G G PVF Sbjct: 435 DYRRFGGAFEEIVQSLVGTADLTRTLETDGVLESGYMTLDSARLIEQD-IWGQGFAAPVF 493 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 + ++ + R++ HL++ S++ AI F + G +H L Sbjct: 494 E-DHFRVDNQRLLKDKHLKLQL-SKNGVRFDAIRFNFAESA---------GASIHAAYRL 542 Query: 572 CVNYWRGSKRCQLRVLDA 589 N + G QL + Sbjct: 543 APNEYNGVTNLQLMLEHF 560 >gi|299822816|ref|ZP_07054702.1| single-stranded-DNA-specific exonuclease RecJ [Listeria grayi DSM 20601] gi|299816345|gb|EFI83583.1| single-stranded-DNA-specific exonuclease RecJ [Listeria grayi DSM 20601] Length = 774 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 168/594 (28%), Positives = 294/594 (49%), Gaps = 30/594 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E + A+ ++ AIP +A +L R ++ F +P+ + + DP Sbjct: 4 SKYTWKIKQTDE--KQVAALAEELAIPVPLANMLWKRKITTAGQYDKFFHPT-KYDVYDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L + DKA RI +AI + E+I+I+GDYD DG S+A++ + L + YIP+R Sbjct: 61 FLLPEMDKAVTRIKKAIASGERILIYGDYDADGVTSIAVLYKTLIKLGAEPSFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + +G L+ITVD G + D ++ A G+DVIV DHH+ + A Sbjct: 121 EGYGPNSAAFQAAKADGVDLLITVDNGIAALDVMEEAAAIGLDVIVTDHHEGRDTLPKAL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P + L GV + + + L + LLDLVA+ T+ D Sbjct: 181 AVIHPRHPESDYPFPDLAGVGVAYKLAHAL---LGAEPT--------ELLDLVAVGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V +GL R + GL AL ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQRGLRKLREEPTLGLAALAKKASVKLEAATEETVGFALAPRLNAIGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL++ D +E LA ++D N+ R+ + +A+ E+A V + + + + V+ Sbjct: 290 GPADPAADLLLTPDEEEAGFLAEEIDEANKERKAIVAAITEEAVTLV--EENGLAEDRVL 347 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 ++ + W+ G++G++A+RL +++ RP ++ G GSGRSI F + Sbjct: 348 ILSKEGWNAGVLGIVASRLVDRYARPVIMLASDPATGIAKGSGRSIPAFHLY--QELDKN 405 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +++ GGH MAAGLT+ L + A ++ ++ L + +++ Sbjct: 406 RALMIAFGGHPMAAGLTIATEQVEELRSQLNQQAA-LLKDEDFQLELIVEDKLALADIDV 464 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE--TLQAIAF 546 A I +E+ P+G NP PVF N KLQ+ + + HL+ +++ TL A+ F Sbjct: 465 AFISKIENLAPFGTDNPKPVFRLQNLKLQNTKRIGGDKTHLKTLLVDENNTSATLDAVGF 524 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + + G L +N W ++ QLR++D + F + Sbjct: 525 GFGDL----AEKVSAQATVEIAGELSINEWNNVRKPQLRLVDMHIEKWQLFDVR 574 >gi|28211395|ref|NP_782339.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani E88] gi|28203836|gb|AAO36276.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani E88] Length = 611 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 169/599 (28%), Positives = 286/599 (47%), Gaps = 40/599 (6%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 RW+ +++ I + + +VLVNR + F+N SI L DP + Sbjct: 26 KRWMIKCSSVN---IKKLSKATGINEAMIKVLVNRGIKTSYDINRFINASIEDLY-DPFL 81 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DK I +AI ++K+ I+GDYD DG S ++ R L C N +IPDR +G Sbjct: 82 MKDMDKGVELIKKAIEENKKLAIYGDYDADGVTSTVILYRGLKKCGANFIYHIPDRENEG 141 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------ 188 YG N +EK N G ++I++ D G ++ + +++A G+ V++ DHH++ + Sbjct: 142 YGMNKDRIEKLKNNGVEIILSCDNGISAINEIEFAKELGMQVVITDHHELGFIDKDEKRE 201 Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A A++NP R D LC AG+ F + +Y ++ + + +L LL Sbjct: 202 YILPKADAIINPKREDCTYPFKLLCGAGIAFKFIQALYSVMGIN-----SKELYELLQYA 256 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ T+CDVV L+ NR V G+ + + N GLK LI+ I+ + + ++G++IGP Sbjct: 257 AIGTICDVVDLVDENRILVKNGIELLKDTDNLGLKYLIKETGINEKNLNSYHIGFVIGPC 316 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + L LL++++ + LA KL LN R+ + S +E + + Sbjct: 317 INATGRLETAKLSVELLLAEEDSKALDLAKKLHELNLERQKLTSDGVESVREII--ENSS 374 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 I+ +IVV H I G++A +++E++ P+ I+ + K GSGRSIE +++ Sbjct: 375 IKNDKIIVVYNKDIHESIAGIVAGKIREEYNLPAIIIT-KGKEKAKGSGRSIEEYNM--F 431 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + IL GGH MAAGL+++ N +L + + + P ID L+ Sbjct: 432 EELIKCKEILENFGGHPMAAGLSIKEENIDKLREKLNDQCN--LTEEDIIPKITIDEKLS 489 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQ 542 V+I I+ L P+G GN +PVFA K+ I ++ L+ + D ++ Sbjct: 490 PDKVSIDFINKLSILEPFGKGNSSPVFAEKKLKIDKILLLGKDRNTLKFIIKVDDVRKME 549 Query: 543 AIAFRVY-----------GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F G + + +M + +N + G Q+R++D Sbjct: 550 GICFGRGNEFEKTLKKNYGEKYRFIMNNPKDIKMDFIFYPTINEYNGYVNLQMRIIDYR 608 >gi|217970382|ref|YP_002355616.1| single-stranded-DNA-specific exonuclease RecJ [Thauera sp. MZ1T] gi|217507709|gb|ACK54720.1| single-stranded-DNA-specific exonuclease RecJ [Thauera sp. MZ1T] Length = 563 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 165/572 (28%), Positives = 269/572 (47%), Gaps = 24/572 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 +A A + ++AR+ R ++ L+ S++ L+P P LT +AA + Sbjct: 10 PQQAFARLADAGLHPLLARLYAARGIARADE---LDTSLKNLLP-PEALTGTAEAAILLA 65 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI +++I DYD DGA + A+ +R L + + +PDR+ GYG P+++E Sbjct: 66 DAIEAGARMVIVADYDCDGATACAVGVRALRAFGADVHYLVPDRVTLGYGLTPAMVEIAA 125 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 ++ITVD G S + + A G+ ++ DHH A +VNPN+ Sbjct: 126 RLEPDVLITVDNGIASVEGIAAARAHGMATVITDHHLPGDVLPEADVIVNPNQPGCDFPS 185 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 L G +F ++ + LR+ +L LLDLVAL TV DVV L NR V Sbjct: 186 KALAGVGAMFYTMLALRAELRERGAFAGAKEPNLAELLDLVALGTVADVVKLDRNNRILV 245 Query: 265 VKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLI 322 +GL R PG++AL + +LG+MIGP +NA GR+ + +LG LI Sbjct: 246 AQGLARMRAGRLQPGIRALFGLAGRDPARASTMDLGFMIGPRLNAAGRLSDMSLGIECLI 305 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 +DD +A +LD LN+ RR +E+ M E+A A++ D + + + WH G+ Sbjct: 306 TDDPGRAMNIAQELDKLNRERRSIEAGMQEEALARLA--GFDAGNRATVALFEPDWHQGV 363 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGH 440 +G++A R+KE+ RP+ A + DG+ GSGRSI G + + + ++V+ GGH Sbjct: 364 IGIVAGRIKERLHRPTIAFARASDGELKGSGRSIPGLHLRDALDLVTKRQPDLIVRFGGH 423 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 AMAAGLT+ R F++ ++ DG L + + ML++ Sbjct: 424 AMAAGLTIRESELARFDAAFEEVVGELLEPAQLERRIDTDGSLESGYFALDAARMLDN-E 482 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560 +G G P P+F +++ R++ HL++ ++ S +AI F G+ Sbjct: 483 IWGQGFPAPLFD-DVFRVERQRLLKDKHLKLEL-ARGSTRYEAIRFNHAEGAAGQ----- 535 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +H L +N + G QL + Sbjct: 536 ----IHAAFRLGINEYNGVASVQLMLEHFEAA 563 >gi|119511965|ref|ZP_01631062.1| RecJ exonuclease [Nodularia spumigena CCY9414] gi|119463385|gb|EAW44325.1| RecJ exonuclease [Nodularia spumigena CCY9414] Length = 727 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 176/640 (27%), Positives = 306/640 (47%), Gaps = 61/640 (9%) Query: 1 MNDQAF---LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDY 56 M DQ+F + RW Q + LA+ + I++++L+NR ++ + Sbjct: 1 MLDQSFPKPRTPHQGLPNQRWEIYPQQPEFAQNLAMM--TNVSPIISQLLINRGITTPEA 58 Query: 57 AKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115 A+ FLNP L++P P D + + QAI + KI I GDYD DG S AL++R Sbjct: 59 AQGFLNPE-SLILPSPLEEFPDLAMSVELLQQAIASQAKIAICGDYDADGMTSTALLLRS 117 Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175 L + IP R+ DGYG N ++E+F +EG +LI+TVD G ++Y+ + A G++ Sbjct: 118 LRSLGAQVDYAIPSRMHDGYGINKRIVEEFHSEGVELILTVDNGISAYEPIARARELGLN 177 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 VIV DHH + + PA A++NP + + S + GV +++ V + + L + + Sbjct: 178 VIVTDHHDIPPKLPPANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGEIKGL--- 234 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---- 291 + +L L L T+ D+ PL G+NR +V +GL + PG+KALI+ + Sbjct: 235 --VQPMLALFTLGTIADLAPLTGVNRRWVKRGLKHLPKSNLPGIKALIQVAGLQVREEAG 292 Query: 292 -------------------------------ITAENLGYMIGPSINAGGRIGESNLGSRL 320 + E++G+ +GP INA GRIG+ L Sbjct: 293 SREQGAGEQGSREQGSREQGARKPSASSAKSLKPEDIGFRLGPRINAIGRIGDPQTVIEL 352 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWH 379 L +DD AM+ ++ N +R+ M + ++A A V + ++ + V+VV WH Sbjct: 353 LTTDDMAIALDRAMQCELTNTSRQQMCEEIEQEAIAYVEAEFVSELPKDRVLVVIKPNWH 412 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++G++A+RL E++G P F ++E++G GS R I F++ + + + +L K GG Sbjct: 413 HGVIGIVASRLVERYGVPVFIGTYEDEGHIRGSARGIPEFNVFEALQYCH--DLLGKFGG 470 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A G + N L +FA+ + P+ +ID + + +N L + + Sbjct: 471 HKAAGGFSFPAANLEILRSRLCEFANQCLELQHLKPLLRIDAEADFNQLNQPLYQQINAL 530 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES---QDSETLQAIAFRVYGTPLGEF 556 P G NP+P+F ++ ++V ++++T ++AIA+R G++ Sbjct: 531 HPCGMENPDPLFWTSGVQVIEQKIVGKGNIKLTLSQTIHDQQYKIKAIAWR-----WGDY 585 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 R+ + L N++ G+ +L +L A H Sbjct: 586 FPLPP--RIDIAYKLRENHFNGNTTIELELLGARLANDHL 623 >gi|329121022|ref|ZP_08249653.1| single-stranded-DNA-specific exonuclease RecJ [Dialister micraerophilus DSM 19965] gi|327471184|gb|EGF16638.1| single-stranded-DNA-specific exonuclease RecJ [Dialister micraerophilus DSM 19965] Length = 663 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 167/587 (28%), Positives = 285/587 (48%), Gaps = 31/587 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDP 72 S ++W + + +K I D +AR+++ R ++ + FL+ S+ L +P Sbjct: 2 SKYKWNLEEKNKEVAVIPDFFKKENISDALARIMIRRGINSEDILIPFLHGSLNEL-ENP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ A RI+ AI +E I+IFGDYDVDG S +++ RF + VN YIPDR Sbjct: 61 FVMKGMKSAVDRILIAINKNENIVIFGDYDVDGITSTSILYRFFKNLGVNVGYYIPDRET 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + L+ITVDCG + + ++ IDVIV DHH E Sbjct: 121 EGYGPNVNAINNLAK-KYDLLITVDCGIAA-AKIFKEASKDIDVIVTDHHMPPDELPDVI 178 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 ++++P++ D + GV + + IY + ++LVAL T+ D Sbjct: 179 SVIDPHQKDCEYHFSEMAGCGVAYSLCRAIYLKKFNKDYFND-------IELVALGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALI--------ERVNISSPITAENLGYMIGPS 304 VV L NR +V +GL N GLKAL+ N I +EN+ ++I P Sbjct: 232 VVSLTDENRIFVKEGLKRLINTENKGLKALLYETGILKENEENQKKMIRSENISFIIAPR 291 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GRI + +G LL S + + + LA KL +N R+ +E + A+ V + D Sbjct: 292 LNAAGRINHAKIGVELLTSTNDCKAKELAKKLCEINSERQKIEREIYGYAQDIVKKK--D 349 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + + IV+ G+ WHPG++G++A+RL + + +PSF IS + G G GS RSI GF+I + Sbjct: 350 LSKEKTIVIAGENWHPGVIGIVASRLLDTYNKPSFVISIKG-GVGKGSCRSIPGFNIYEA 408 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + IL++ GGH MAAG +++ N + K+ + + P+ +I+ ++ Sbjct: 409 LKA--HSDILLQFGGHKMAAGFSIKEENIKLFEERMIKYTNEKITDEDCIPILEIEENIS 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQA 543 + + + I L+ P+G NP P+F + R + + F + +++ ++ Sbjct: 467 LNEITLDFIRSLDILEPFGCDNPKPLFLSKEILVNRTRRIGNENKHFKFSTFNNKEEIEG 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + ++G+ + V ++ W G + QL D Sbjct: 527 VFWNYENNSFC-----NQGQLIDVVYEPEIHNWYG-EHVQLNCKDIE 567 >gi|114561850|ref|YP_749363.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella frigidimarina NCIMB 400] gi|114333143|gb|ABI70525.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella frigidimarina NCIMB 400] Length = 574 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 272/565 (48%), Gaps = 21/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++ ++ ++ R V+ D + L+ +R P + +AA I AI + I+I Sbjct: 19 SLSPLLKQLYARRGVNEDNCELVLSKLLR-----PDTMKGLAEAAVIIADAIAAQQSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S ++ M L + IP+R GYG +P ++ + A ++ITV Sbjct: 74 VGDFDADGATSTSVCMLALKMMGAKHVDYLIPNRFDYGYGLSPEIVAVAFTKNADVLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ VIV DHH S A +VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKLLGMTVIVTDHHLPGSTLPNADVIVNPNQPGCQFASKSIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + LRQ N +L +LLD+VAL TV DVV L NR V GL R Sbjct: 194 YLMSALRAELRQRNWYQQQQITEPNLGTLLDIVALGTVADVVSLDTNNRILVNAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E S I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 SGRCRVGITALLEVAKRSPEKIVAADFGFAVGPRLNAAGRLDEMALGVETLLCEDIMLAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAAR 389 +A +LD LNQ RR +E+ M ++A + + + I + + WH G++G+LA+R Sbjct: 314 RMAAELDGLNQERRELETGMQQEALKSLSKVSLNEEDLPWGIAIFQEDWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLT 447 +K+++ RP A + DG GS RSI+G + ++ G++ K GGHAMAAGL+ Sbjct: 374 IKDRYHRPVIAFADAGDGAIKGSARSIKGLHMRDLLERINGLYPGMITKFGGHAMAAGLS 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ F + + ++ T DG L++ + + +L +AGP+G Sbjct: 434 LKADVFEQFKQAYDDAVREVLDYEQLTGELLSDGELSSPLMTLDTAFLLRNAGPWGQSFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F K+ R+V HL++ E++ S L IAF V + + K Sbjct: 494 EPLFDG-VFKVVQQRIVGEKHLKLLLETECGSTMLDGIAFNVDLAIWPDATI----KHAR 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASP 591 V L VN +RG++ QL V P Sbjct: 549 VVYKLDVNEFRGNQTVQLMVDYIEP 573 >gi|73748731|ref|YP_307970.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp. CBDB1] gi|73660447|emb|CAI83054.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp. CBDB1] Length = 566 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 29/579 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W Q P +++R+L NR ++ + A FL+P + L DP + Sbjct: 9 WKLKPALP-----EETGQNFPYPPLISRLLYNRGITTIEAADLFLSPD-KRLNHDPFLFP 62 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D + A RI +A+ EKI+++GD+D DG + A++ ++ N YIP RI +GYG Sbjct: 63 DMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRITEGYG 122 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 S +EK EG L+I+ DCG T+ ++ A G+DVIV DHH E PAYA++N Sbjct: 123 LKISALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P L GV + ++ +YR L ++++ LLDLVA+ TV D+VP+ Sbjct: 183 PKMPCSTYPCKELAGVGVAYKLIQALYRNLGREDEAK------DLLDLVAIGTVADIVPI 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 + NR V +G+ + + PGL + + I E++ +++ P +NA GR+ + Sbjct: 237 LDENRYLVKEGVKLLNAEPRPGLIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHAM 296 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G +LL + + + LA+ L+ N R+ + +E+A A + TQ ++++ Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQF----PPALLIFSD 352 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 GI GL+A RL +++ RPS I GS RSI F+I + + + Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALNHFAHLFS 409 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGHA AAG T+ N +A I+ + P ID + S + A + Sbjct: 410 HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSGMELKPFIDIDIDTDLSLLCPATLRE 469 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 LE P+G NP PVF + R + HL++ + + +AFR Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQA---- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L + + +L ++ W G+ +L+++D +P Sbjct: 525 -KELSSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAPS 562 >gi|88812412|ref|ZP_01127662.1| single-stranded-DNA-specific exonuclease RecJ [Nitrococcus mobilis Nb-231] gi|88790419|gb|EAR21536.1| single-stranded-DNA-specific exonuclease RecJ [Nitrococcus mobilis Nb-231] Length = 566 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 173/568 (30%), Positives = 264/568 (46%), Gaps = 23/568 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ RV RNV L + L P P +L++ D AA + + +I+I Sbjct: 8 NLHPVLRRVYAARNVCGPAD---LEHGLNELHP-PHLLSNVDTAAELLAGILMAQGRILI 63 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S AL +R L + +P+R GYG +P +++ +IITV Sbjct: 64 VGDFDADGATSTALAIRALRAMGAKAVDYLVPNRFDFGYGLSPEIVQVAQAHRPDVIITV 123 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + A GI V+V DHH + A +VNPN D L GV+F Sbjct: 124 DNGISSLAGVAAANAAGIQVVVTDHHLPGPQLPDAAVIVNPNLPGDPFPSKSLAGVGVIF 183 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + LR +L LLDLVAL TV D+ L NR + +GL R Sbjct: 184 YVMLALRTYLRAAGWFTSRGIAEPNLAQLLDLVALGTVADMAVLDRNNRILLEQGLRRMR 243 Query: 273 R-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 Q PG+ AL+ + A +LG+ +GP +NA GR+ + + G L++D Q Sbjct: 244 AGQACPGILALLAVAGRTCHRLVAADLGFAVGPRLNAAGRLEDMSRGVECLLTDCPQSAS 303 Query: 331 MLAMKLDVLNQNRRLMESAMLEQA---EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 +A +LD LN+ RR +E M EQA + + + + WH G++G+LA Sbjct: 304 TIARELDALNRQRRAIEREMQEQALASLEVLQNEFATASLPRGLCLLDAGWHQGVIGILA 363 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445 +R+K++ RP A + DG GS RS+ G I ++ G++VK GGHAMAAG Sbjct: 364 SRIKQRLHRPVIAFAPAADGNLRGSARSVPGLHIRDLLERVSSRNPGLIVKFGGHAMAAG 423 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ ++ R F+ + I + DG L ++++L L AGP+G G Sbjct: 424 LTLHEGDYERFRLAFEATVTEMASEEIFERIVLTDGELEPDQLDLSLAQTLRVAGPWGQG 483 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 P PVF + R+V H++ ++ Q+ L AIAF + Sbjct: 484 FPEPVFDG-VFAVVDRRIVGEEHVRFRLQAFQNETMLNAIAFSAARHGWDKVQ-----GV 537 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L VN +RG + QL + P Sbjct: 538 VRLAFRLDVNEFRGRQSLQLVIEHLEPA 565 >gi|309785301|ref|ZP_07679932.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae 1617] gi|308926421|gb|EFP71897.1| single-stranded-DNA-specific exonuclease RecJ [Shigella dysenteriae 1617] Length = 530 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 167/530 (31%), Positives = 266/530 (50%), Gaps = 16/530 (3%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIV 132 L+ +KA + A +I++ GD+D DGA S AL + + N + +P+R Sbjct: 6 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 65 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYG N ++++ GAQLI+TVD G +S+ +++A + GI VIV DHH A Sbjct: 66 DGYGLNLEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 125 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALA 248 A++NPN + L GV F +++ + LR +L LLDLVAL Sbjct: 126 AIINPNLRNCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 185 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306 TV DVVPL NR +G+ R + PG+KAL+E N + A +LG+ +GP +N Sbjct: 186 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 245 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDI 365 A GR+ + ++G LL+ D+ E +LA +LD LNQ R+ +E M +A + Sbjct: 246 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRD 305 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + + WH G+VG+LA+R+KE+F RP A + DG GSGRS++G + + Sbjct: 306 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSVQGLHMRDAL 365 Query: 426 SFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 G+++K GGHAMAAGL++E F F + + + DG L Sbjct: 366 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPL 425 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQ 542 + + + + + +L AGP+G P P+F + +L R+V HL++ E L Sbjct: 426 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 484 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF V + + + + + L +N +RG++ Q+ + + P+ Sbjct: 485 GIAFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 530 >gi|281356416|ref|ZP_06242908.1| single-stranded-DNA-specific exonuclease RecJ [Victivallis vadensis ATCC BAA-548] gi|281317108|gb|EFB01130.1| single-stranded-DNA-specific exonuclease RecJ [Victivallis vadensis ATCC BAA-548] Length = 569 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 173/579 (29%), Positives = 277/579 (47%), Gaps = 16/579 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W G +A I QK ++P +A R + D +DFLNP + L DP Sbjct: 4 KNWKL-AGNNLDEQANRIQQKFSLPHPIALYFAARGIGEDNIQDFLNPRLANL-TDPYRF 61 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A+RR+ AI + E I+I GDYD DG + AL+ L + +IP R DGY Sbjct: 62 PGIQEASRRLWDAIAHKEPILIHGDYDTDGITASALLALVLRQNGGIVHSFIPHRFDDGY 121 Query: 136 GPNPSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 G P ++K ++ ++++TVDCG TS DA+ A +GIDVIV DHH+ SE A A Sbjct: 122 GFTPESLQKALDTFGPCKVLVTVDCGITSCDAVNDAVERGIDVIVTDHHEAGSELPKALA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP +L L AG F + + R+ N L +LD VAL TV D+ Sbjct: 182 VINPKVYPELEDLQLLSGAGAAFKLSHAFIKYGREHNLGGFQTRLEEVLDYVALGTVADI 241 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 VPL+G NR V G+ R+Q PG++ALIE + S +T ++ + + P INA GR+G+ Sbjct: 242 VPLLGENRVMVKFGIETLRKQLRPGVRALIESSKLRSELTPADITFRLAPRINAAGRVGD 301 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N+ +LL S+ E A +L+ N+ R+ E + ++A ++ Q ++V Sbjct: 302 ANVALQLLESEHIVEAYQCASQLETYNRVRQEKEQEIYQEACEQIERNL-AWQSEYSLLV 360 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++A+RL + RP+ ++ + D GSGRSI ++ + + + Sbjct: 361 AGRDWHQGVIGIVASRLARDYNRPTIVLTIQGD-VAYGSGRSIACLNL--VEVLSHTSEL 417 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH MA G+ ++ + + + + DG + + Sbjct: 418 LDRYGGHPMAVGIGLKADRIADFFEAMDREVRKQISSADLEDFISYDGEASLHELTPEFF 477 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P++ F ++Q VV AH + T + + + IAF + Sbjct: 478 KYLAMLSPFGHSNVKPIYRFNEVQVQRCSVVGGAHTRGTLRGRTGQ-IDFIAFNRPSSAF 536 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 GK + V +N +G + QL ++D V Sbjct: 537 -------YGKTLDVLATPQLNRHQGLEIPQLNIIDIREV 568 >gi|56808327|ref|ZP_00366088.1| COG0608: Single-stranded DNA-specific exonuclease [Streptococcus pyogenes M49 591] Length = 736 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEARAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|147669497|ref|YP_001214315.1| single-stranded-DNA-specific exonuclease RecJ [Dehalococcoides sp. BAV1] gi|146270445|gb|ABQ17437.1| exonuclease RecJ [Dehalococcoides sp. BAV1] Length = 566 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 164/579 (28%), Positives = 272/579 (46%), Gaps = 29/579 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W Q P +++R+L NR ++ + A FL+P + L DP + Sbjct: 9 WKLKPALP-----EETGQNFPYPPLISRLLYNRGITTIEAADLFLSPD-KRLNHDPFLFP 62 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D + A RI +A+ EKI+++GD+D DG + A++ ++ N YIP RI +GYG Sbjct: 63 DMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLGGNVTPYIPHRITEGYG 122 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 S +EK EG L+I+ DCG T+ ++ A G+DVIV DHH E PAYA++N Sbjct: 123 LKISALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIIN 182 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P L GV + ++ +YR L ++++ LLDLVA+ TV D+VP+ Sbjct: 183 PKMPCSTYPCKELAGVGVAYKLIQALYRNLGREDEAK------DLLDLVAIGTVADIVPI 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 + NR V +G+ + + PGL + + I E++ +++ P +NA GR+ + Sbjct: 237 LDENRYLVKEGVKLLNAEPRPGLIEMAQLSRLHLGEIETESISWIMAPRLNAAGRLEHAM 296 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G +LL + + + LA+ L+ N R+ + +E+A A + TQ ++++ Sbjct: 297 AGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQF----PPALLIFSD 352 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 GI GL+A RL +++ RPS I GS RSI F+I + + + Sbjct: 353 AECPQGISGLVAGRLSDEYYRPSIVI-KTNADSATGSCRSIPDFNI--IQALNHFAHLFS 409 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGHA AAG T+ N +A I+ + P ID + S + A + Sbjct: 410 HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSVMELKPFIDIDIDTDLSLLCPATLRE 469 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 LE P+G NP PVF + R + HL++ + + +AFR Sbjct: 470 LERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHK-GRFWDGVAFRQA---- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L + + +L ++ W G+ +L+++D +P Sbjct: 525 -KELSSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAPS 562 >gi|255527534|ref|ZP_05394401.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium carboxidivorans P7] gi|296187920|ref|ZP_06856312.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium carboxidivorans P7] gi|255508772|gb|EET85145.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium carboxidivorans P7] gi|296047046|gb|EFG86488.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium carboxidivorans P7] Length = 592 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 175/604 (28%), Positives = 283/604 (46%), Gaps = 46/604 (7%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ A I + I +I+A +L+NR V + D + F+NPS+ L DPL+ Sbjct: 3 KKWMLKRCNGD---ARNIAKNLGISEILACILINRGVKTEDKIRKFMNPSLEYLY-DPLL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DK I AI KI+++GDYD DG S ++ L C +IPDRI +G Sbjct: 59 MKDMDKGTSIIKNAIVKKNKIVVYGDYDADGIISTYILYSALVECGAEVKYHIPDRITEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE------- 187 YG N ++ EG IIT D G ++ + ++ A + V++ DHH + Sbjct: 119 YGINSESIKVLKEEGYDTIITCDNGISALEQIKIAKELDMTVVITDHHDIPFTEAADGEK 178 Query: 188 ---EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A++NP + D LC AGV F + ++Y + D K ++ Sbjct: 179 NFAIPEADAIINPKQEDCNYPFKSLCGAGVAFKFVQVLYSKMEIDEKKS-----YKFIEY 233 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303 A+ T+CDVV L+ NR GL + + N GLKALI+ + I + ++G++IGP Sbjct: 234 AAIGTICDVVDLLDENRIIAKNGLDMLNKTENIGLKALIKETALDEKKINSYHIGFVIGP 293 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+ + L +LL+ +D +E + A KL LN R+ M + Q + + Sbjct: 294 CINATGRLDSATLALKLLLCNDDEEAKCFAKKLHELNVQRQNMTMDSVNQIIETI--ENS 351 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 +++ V+V+ H I G++A RLKEK+ PS I+ E GSGRSIE +++ Sbjct: 352 NMKNDKVLVIYKKDVHESIAGIVAGRLKEKYNVPSIVITKGEK-TPKGSGRSIEEYNM-- 408 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + +L K GGH +AAGL++E N + + TP +ID L Sbjct: 409 FHELTRCKDMLKKFGGHPLAAGLSIEEENIDKFRKVLNDNC--CLTKDDITPKIRIDKQL 466 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDS-ET 540 + + VN LI+ ++ P+G N +P FA N + + + ++ + ++ E Sbjct: 467 SLNQVNFDLINEIQKLEPFGKSNSHPYFAEKNINVFRVYFIGKEKNVVKFFCRNTNNFEK 526 Query: 541 LQAIAFRVYGTPLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRV 586 L AI F G + + +S G+ ++ +N + G++ QL V Sbjct: 527 LDAICFD-GGDKFKQIIEESYGEKRLKEILQSNIANLKLDFIFSPEINEFNGNRSLQLVV 585 Query: 587 LDAS 590 D Sbjct: 586 KDFR 589 >gi|262282434|ref|ZP_06060202.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. 2_1_36FAA] gi|262261725|gb|EEY80423.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus sp. 2_1_36FAA] Length = 739 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 174/592 (29%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W N +K + A +L R V + A ++FL PS+ L DP Sbjct: 4 SKYDWQFATNFTDENFLKK-AKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D ++A RI AI N E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YDLHDMERAVERIRAAIENYEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI LIITVD G +A++ A + G+DVIV DHH + E A Sbjct: 122 DGYGPNSSVYKYFIENQGVSLIITVDNGVAGLEAIELAQSLGVDVIVTDHHSMPKELPNA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P L GV F + + ++ + LLDLVA+ T+ Sbjct: 182 YAIVHPEHSRADYPFKQLAGCGVAFKLATALLEEVQ-----------VELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L + I + E +G+ + P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ ++ N R+ + + E+A+ + + V Sbjct: 291 LDDPNPAVELLTGFDDEEARDIALMINQKNDERKEIVQQIYEEAQTML------DPKRPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ + W+PG++G++A RL E+ +P ++ EDG GS RSIE +I + Sbjct: 345 QVLAKEGWNPGVLGIVAGRLLEELHQPVIVLN-IEDGIAKGSARSIEAVNI--FEALDSH 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGHA AAG+T+E L D F + L +D L + + Sbjct: 402 RDLFVAFGGHAGAAGMTLEADKLTELSDILTAFILDNDLDLTGKTALYLDEELYLPELTL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + E P+G N P+F + K+ ++R + +HL++ +D T + +AF Sbjct: 462 DTLKSFEKLAPFGMDNKKPLFYLKDFKVDNVRTMGAGNSHLKLKISQED-ATFEVVAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ K + + L VN W G QL ++DA F + Sbjct: 521 GSL----ATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVDGVQLFNIR 568 >gi|291549197|emb|CBL25459.1| exonuclease RecJ [Ruminococcus torques L2-14] Length = 574 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 175/584 (29%), Positives = 293/584 (50%), Gaps = 28/584 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLIL 75 +W + + N I +K+ I I+AR++ NR+V D A DF LN ++ L D L++ Sbjct: 3 KWFVAMKKADFN---GIAEKYQISPIIARLMRNRDVIGDEAIDFYLNGTVEDLY-DGLLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+A + + I +KI + GDYD+DG + ++ + L+ + + IPDRI DGY Sbjct: 59 KDMDRAVDILKEKIEEGKKIRVIGDYDIDGVNATYILQQGLAGLGADVDTDIPDRIKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L+++ + + IIT D G + + Y G+ ++V DHH+V Sbjct: 119 GLNQMLIDRALEDDVDTIITCDNGIAAMSEIAYGKENGMTIVVTDHHEVPYLEENGEKKH 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+V+P+R D LC A V + ++ ++YR+ + + + SL++ VA Sbjct: 179 LLPPADAVVDPHRADCEYPFKGLCGAAVAYKLVEVLYRVSGKSEQEVEHLQ-ESLMENVA 237 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 +AT+ DV+ L+G NR +V KGL + + N GL AL++ + + + ++G++IGP I Sbjct: 238 IATIGDVMDLVGENRVFVKKGLELLKTTKNEGLHALMQCTGVDTANLNTYHIGFVIGPCI 297 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NAGGR+ + LL + + +E LA L LN +R+ M +E+A ++ + Sbjct: 298 NAGGRLDTAKRALELLNASNRREAVTLAADLKELNDSRKEMTEEGVEEAVRQI--ESSSW 355 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+VV H I G++A R+KE++ RP+F ++ E G GSGRSIE +D+ + Sbjct: 356 KDDQVLVVYLPECHESIAGIIAGRIKERYYRPTFVLTKGEAGV-KGSGRSIEAYDMFAEM 414 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 S E + K GGH +AAGL++E N + A + ID L Sbjct: 415 SRCRE--LFTKFGGHKLAAGLSLEEENVEVFRKRINELAD--LTEEDLQMKVSIDMRLPF 470 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +N LI L+ P+G GN P+FA ++ R+ L+ E Q ++A Sbjct: 471 PYINEELIHELKILEPFGKGNGKPLFAESKLRVIQPRIFGKNRNVLKCRLEDQQGNQMEA 530 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F L + + + M T + +N + G + QL ++ Sbjct: 531 VYFGEVEDCLRQM---EKKQIMSFTYYPSINEYMGRRTIQLTIV 571 >gi|209559273|ref|YP_002285745.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes NZ131] gi|209540474|gb|ACI61050.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes NZ131] Length = 736 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 173/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEARAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VNYW G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNYWNGNTSLQFMLVDARV 559 >gi|94994217|ref|YP_602315.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS10750] gi|94547725|gb|ABF37771.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS10750] Length = 736 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ +R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQVRTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|153954758|ref|YP_001395523.1| hypothetical protein CKL_2140 [Clostridium kluyveri DSM 555] gi|219855222|ref|YP_002472344.1| hypothetical protein CKR_1879 [Clostridium kluyveri NBRC 12016] gi|146347616|gb|EDK34152.1| RecJ [Clostridium kluyveri DSM 555] gi|219568946|dbj|BAH06930.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 595 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 181/603 (30%), Positives = 286/603 (47%), Gaps = 44/603 (7%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 RW+ + I++K I +I+A +L NR + + +DFLNPS+ L DPL Sbjct: 3 RRWMLKRCNKD---VKYISKKAGISEIMATILANRGIVEEKEIRDFLNPSVDNLQ-DPLS 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +K I +AI +++ I I+GDYDVDG S ++ L C +IPDRI +G Sbjct: 59 MKDMEKGTDIIYKAIMDNKNIAIYGDYDVDGVMSTYILYCGLLKCGAKVKYHIPDRIEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----------QV 184 YG N +EK EG ++IIT D G ++ ++ A GI V++ DHH + Sbjct: 119 YGINIKSIEKLKEEGCEVIITCDNGISALAQVKRAKELGIAVVITDHHHIFFEERENGEK 178 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A+++P + D HLC AGV F + ++Y+ + Sbjct: 179 TYLIPEADAVIDPKQEDCSYPFKHLCGAGVAFKFIQVLYKKFNFKK-----EQCYKFIQY 233 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303 A+ T+CD+V LI NR V KGL + N GLKALIE ++ IT+ ++G++IGP Sbjct: 234 AAIGTICDIVDLIDENRIIVKKGLDMINNTENLGLKALIEETSLKGKNITSYHIGFIIGP 293 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+ + L LL+ D+++ LA KL LN R+ M L KV + Sbjct: 294 CINATGRLKSAVLALELLLCKDAEKAGKLAKKLHELNIQRQDMTVKSLNNIIDKV--ENS 351 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++++ V+VV H I G++A RLK+++ PS I+ GSGRSIEG+++ Sbjct: 352 NLKRDKVLVVYEKETHESIAGIVAGRLKDRYNVPSIVIT-SGRIMSKGSGRSIEGYNM-- 408 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + ++ K GGH +AAGL++ N RL + K + + P +ID L Sbjct: 409 FEELVKCKELMEKFGGHPLAAGLSITEENINRLRENLNKNCN--LTEEDLIPKIRIDKKL 466 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDS-ET 540 ++ +++ ++ P+G GN P+F N + I + L++ ++S + Sbjct: 467 PLENISFHVLEDIKKLEPFGKGNSTPLFGEKNIDVFKIYFMGKDKNVLKLFCRLKNSLKK 526 Query: 541 LQAIAFRVYGTPLGEFLM-------------QSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + AIAF L +M C+N + G K QL + Sbjct: 527 IDAIAFDGGEKFKKLILEVYGSSGANKIFNNNFTSLKMDFIFLPCINEFNGVKNLQLVIK 586 Query: 588 DAS 590 D Sbjct: 587 DFR 589 >gi|139473914|ref|YP_001128630.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes str. Manfredo] gi|134272161|emb|CAM30406.1| putative single-stranded-DNA-specific exonuclease [Streptococcus pyogenes str. Manfredo] Length = 736 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L D +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDSLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|71903372|ref|YP_280175.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes MGAS6180] gi|71802467|gb|AAX71820.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes MGAS6180] Length = 736 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 273/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|154249033|ref|YP_001409858.1| single-stranded-DNA-specific exonuclease RecJ [Fervidobacterium nodosum Rt17-B1] gi|154152969|gb|ABS60201.1| single-stranded-DNA-specific exonuclease RecJ [Fervidobacterium nodosum Rt17-B1] Length = 989 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 172/577 (29%), Positives = 291/577 (50%), Gaps = 24/577 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW Q + ++++ + VA++LV R + + + AK FLNP+ R + P +L Sbjct: 2 RWELR--QVDEHLVQELSERLGVNKFVAKLLVLRGIKTEEDAKRFLNPT-RQTLRSPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA +++A N EK++I GDYDVDG A++ FLS N + YIP R+ +GY Sbjct: 59 KDMEKAVEILLRARDNGEKVIIHGDYDVDGITGTAVLYTFLSENGWNVDYYIPKRVDNGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G P +E+ + +G + I+TVDCG T+++A+ A G+++++ DHHQ K A A+V Sbjct: 119 GIQPQFVEEIVLKGFKTILTVDCGITAFEAVDKAKELGLNIVITDHHQPKETLPNADAIV 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP R DD GV + ++ + + V LLDLVAL TV D+V Sbjct: 179 NPKRPDDEYPFKEFAGVGVAYKLITALAEKMNIPPSVT-----DELLDLVALGTVADMVE 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L+ NR V +GL G+ LI+++ I + I+ ++GY I P +NA GR+ + Sbjct: 234 LLDENRYIVREGLKRLNNTAKLGIVRLIQKIGI-ATISTRDIGYRIAPKLNAAGRLDSPD 292 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 +L+++ D L L N R+ +E+ + +A + + +++ ++V G Sbjct: 293 DAFKLIVTKDEASATELVEILLGYNVTRQGIEAKIYNEAVQMI--ESNNLDSLPIVVAYG 350 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A RL + +P IS EDG G GS RS++G +I +++ I Sbjct: 351 YGWHLGVIGIVATRLVHLYNKPVMVIS-IEDGVGRGSARSVQGVNIIELLER--FRDIFE 407 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MA G +++ L ++ + V +D ++ +N L+ Sbjct: 408 DFGGHTMALGFSLKEEKIPELIKAIREKIRE--EDIKVEEVIAVDEKISVDEINEDLLKS 465 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPL 553 +E PYG GNP PVF N ++ ++ +++T + +S +++ + F + +P Sbjct: 466 IELLEPYGHGNPEPVFLIQNSPVERFKIFGETGYNIRLTLK-GNSNSIEGVGFGLKFSPN 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + +Q + RM V G+L G QL VLD Sbjct: 525 EMYGIQPQFIRMDVVGNLRT----GEAGPQLNVLDLK 557 >gi|226941314|ref|YP_002796388.1| RecJ [Laribacter hongkongensis HLHK9] gi|226716241|gb|ACO75379.1| RecJ [Laribacter hongkongensis HLHK9] Length = 563 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 165/561 (29%), Positives = 266/561 (47%), Gaps = 25/561 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++AR+ R + L+ + L+P L + + ARR+ AI E++++ Sbjct: 21 GVSPLMARLFAARGI---EHASQLDAGLARLVP-FSRLRNAEAMARRLADAIARRERLLV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + AL ++ L + +P+R GYG P ++ +++TVD Sbjct: 77 VADYDADGATACALAVKGLRAFGATVDFIVPNRFEYGYGLTPEIVGLAAERAPDILLTVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G++V+V DHH E +P +VNPN+ HL GV+F Sbjct: 137 NGIASVAGVNAARALGMEVLVTDHHLPGDE-LPEALIVNPNQPGCDFPSKHLAGCGVMFY 195 Query: 218 VLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQ 274 VL+ + LR +L LDLVAL TV DVV L NR V +GL R + Sbjct: 196 VLMALRAELRARGAFATGGEPNLAQWLDLVALGTVADVVRLDDNNRILVEQGLRRMRGGR 255 Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 +PG+ AL ++ +LG+M+GP +NA GR+ + G +L+++ +A Sbjct: 256 ASPGIAALFAASGRPIAKASSFDLGFMLGPRLNAAGRLDDMTFGIEMLLAEREDSALEMA 315 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD +N+ RR +E M ++A ++ D + + + D WH G+VG++A+RLK++ Sbjct: 316 RELDRMNRTRREIEHGMQDEATLQLA--GFDPAERFTLSLYRDDWHQGVVGIVASRLKDR 373 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 F RP+ + + G+ GSGRSI GF + + E G++ K GGHAMAAGLTV Sbjct: 374 FHRPAIVFAPGDAGEIKGSGRSIAGFHLRDALDLVSKREPGLIRKFGGHAMAAGLTVLEA 433 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 + R F++ A + T + DG L + + + L + +G G P P F Sbjct: 434 DLPRFSAAFEQVAREWLDEAALTRRIETDGALAVTELALDTAREL-ALTVWGQGFPPPSF 492 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 ++ R+V HL++T +D +A+ F +R+ L Sbjct: 493 -SDVFRVLEQRIVGGKHLKLTL-GKDGGEFEAMLFNHSEF---------LPERIDAVFRL 541 Query: 572 CVNYWRGSKRCQLRVLDASPV 592 VN WRG + QL + Sbjct: 542 NVNEWRGVELMQLYIDHWRAA 562 >gi|15674946|ref|NP_269120.1| putative single-strand DNA-specific exonuclease [Streptococcus pyogenes M1 GAS] gi|71910540|ref|YP_282090.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes MGAS5005] gi|94992296|ref|YP_600395.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS2096] gi|13622090|gb|AAK33841.1| putative single-strand DNA-specific exonuclease [Streptococcus pyogenes M1 GAS] gi|71853322|gb|AAZ51345.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes MGAS5005] gi|94545804|gb|ABF35851.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS2096] Length = 736 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ +R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|307688899|ref|ZP_07631345.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium cellulovorans 743B] Length = 598 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 172/612 (28%), Positives = 280/612 (45%), Gaps = 50/612 (8%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW A + I I+A++L +R + D + FL SI M DP + Sbjct: 3 KRWTIKPM---TKAAQKLATDSFISPIIAKLLWDRGIRDKDEVEKFLKGSIDE-MYDPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D A I++AI+ +KI+I+GDYDVDG S +M + L +IPDR +G Sbjct: 59 MKDMDLATSIIIKAIFEEKKIVIYGDYDVDGVTSTVIMFKALKRVGARVTYHIPDREKEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--------- 185 YG N +E +G +IITVD G + + ++YA G V++ DHH + Sbjct: 119 YGLNKKSIEVLREQGNSVIITVDNGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGER 178 Query: 186 -SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A++NP R D +LC A + F V ++ + D K N L Sbjct: 179 KEILPNADAIINPKRSDCNYPFKYLCGASIAFKFAVALFIKRKIDYKEAYN----EYLQF 234 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGP 303 +ATVCDVV LI NR + L N G+ +L + ++ I+ +G+++GP Sbjct: 235 AGIATVCDVVDLIDENRVILKNALKSINNSKNIGINSLRKFTLSLDKEISVYAIGFVMGP 294 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+ + + LL++ + + E LA +L LN+ R+ M + +E+ ++ + Sbjct: 295 CINATGRLENAKMAVELLLTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEI--ELG 352 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 D V+VV H I G++A R++EK+ +P+ ++ +G GS RSIE ++I Sbjct: 353 DYYNDKVLVVYEPTIHESIAGIIAGRIREKYNKPTIILTKAVEGV-KGSARSIEEYNIY- 410 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + +L K GGH MAAG++++ N L + I+ P ID L Sbjct: 411 -EELLKCKNLLDKFGGHPMAAGMSLKEENIEPLRETLNGKC--ILTDEDMIPKVVIDFPL 467 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541 ++ ++ ++I + P+G GN P+F N L+ V L++ F Q + Sbjct: 468 SSHKIDDSIIYDIGELAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQ-GRRI 526 Query: 542 QAIAF------------RVYGTPLGEFLMQSRG--------KRMHVTGHLCVNYWRGSKR 581 A+AF GE L S G R+ + N ++G+K+ Sbjct: 527 DAVAFKKYLELMEIIEENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKK 586 Query: 582 CQLRVLDASPVE 593 QL+V + + Sbjct: 587 IQLKVHELRISK 598 >gi|83816027|ref|YP_446338.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber DSM 13855] gi|83757421|gb|ABC45534.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber DSM 13855] Length = 584 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 169/591 (28%), Positives = 277/591 (46%), Gaps = 23/591 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHA-IPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 +RW E + + ++ +P +AR L R V+ + AK F L DP Sbjct: 5 YRWTPRALDE-PDVVPRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALH-DPF 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D AA R+ AI + ++++GDYDVDG AL FL V+ + +IPDR D Sbjct: 63 GMAGMDAAAARLSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGVDVSFFIPDRYED 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG ++ GA L++ +DCG T+++ YA G+D+I+ DHH K A A Sbjct: 123 GYGLCRRGLDAAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEALA 182 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P R DD L G+ F ++ + + LDL+AL+T D+ Sbjct: 183 VLDPKRPDDDYPFEELPGCGLAFKLVQAVLAHRDEAPDAA-----YEYLDLLALSTASDI 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINAGGRI 311 VPL G NR + +GL +R PG++AL + ++ N+ + +GP INA GR+ Sbjct: 238 VPLYGENRVLMAEGLEALQRSTRPGVQALADAADLDLQTVTSTGNIVFTLGPRINAAGRM 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ LL++ +E E A +L+ LN+ RR ++ + E+A + Q + Sbjct: 298 EHASSAVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEEEAVERAERQITSRS-PHAL 356 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WH G++G++A+ + E+F +P+ ++ + GS RSIEG +I + ++ E Sbjct: 357 VLYDPDWHLGVIGIVASSIVERFHKPTILLTHNGEAV-KGSARSIEGINIYEALADC--E 413 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-- 489 +L + GGH AAG+++E + D F V + TP K+D ++ + Sbjct: 414 DVLTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDASVDLDTIGSV 473 Query: 490 -IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD---SETLQA 543 +L+ GP+G NP PVF + + S R V +HL+ +D +T A Sbjct: 474 ADRFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRDASSGQTYDA 533 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 I F + Q G + + L N W G QL+ D E Sbjct: 534 IGFGMGEKLSVLRESQDTGTPVELLFSLEENTWNGRTTLQLKARDVRLDEA 584 >gi|306827481|ref|ZP_07460764.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pyogenes ATCC 10782] gi|304430279|gb|EFM33305.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pyogenes ATCC 10782] Length = 736 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ +R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|307266557|ref|ZP_07548089.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter wiegelii Rt8.B1] gi|306918411|gb|EFN48653.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter wiegelii Rt8.B1] Length = 815 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 178/576 (30%), Positives = 293/576 (50%), Gaps = 23/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + I +++ + I+A +L + ++ K+FLNP ++ L P +L Sbjct: 9 YRWILKE-NPNLQLTQEIQREYGLHKIIADILSS-KLNAQEVKNFLNPDLKDLY-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + I I+GDYDVDG + +++ L + YIP+R+V+GY Sbjct: 66 RGIKEAKELIQQHIALKDLITIYGDYDVDGITATSVLYLTLKKLGAKVDYYIPERLVEGY 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LII+VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAQFLGIDVIITDHHSIPKEIPQADVVI 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ D L GV F + + + LLD+V++ T+ D+VP Sbjct: 186 NPHLPDIEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKALI+ + I ++G+++ P +NA GR+ + Sbjct: 235 LLGENRIIVKEGLKRLNETRNIGLKALIKASGLQNIEIDEYHVGFILAPRLNAAGRLRSA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS D +E+E +A L+ N R+ +E+ +L++A K+ + D+ + VIV+ Sbjct: 295 EAAVRLLISQDEKEVEEIAEYLNQENLKRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ K + + + L Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P +ID + ++I + Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 L+ P+G+ NP P F F + + +N + +D + + F V Sbjct: 471 QLQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIAQKDKFGYELMLFDVSDQGND 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + V G + +N W G + + V D Sbjct: 531 ----VKIGDIIDVVGSIEINSWNGIESVMINVKDLR 562 >gi|294508276|ref|YP_003572334.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber M8] gi|294344604|emb|CBH25382.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber M8] Length = 626 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 169/591 (28%), Positives = 277/591 (46%), Gaps = 23/591 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHA-IPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 +RW E + + ++ +P +AR L R V+ + AK F L DP Sbjct: 47 YRWTPRALDE-PDVVPRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALH-DPF 104 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D AA R+ AI + ++++GDYDVDG AL FL V+ + +IPDR D Sbjct: 105 GMAGMDAAAARLSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGVDVSFFIPDRYED 164 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG ++ GA L++ +DCG T+++ YA G+D+I+ DHH K A A Sbjct: 165 GYGLCRRGLDAAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEALA 224 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P R DD L G+ F ++ + + LDL+AL+T D+ Sbjct: 225 VLDPKRPDDDYPFEELPGCGLAFKLVQAVLAHRDEAPDAA-----YEYLDLLALSTASDI 279 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINAGGRI 311 VPL G NR + +GL +R PG++AL + ++ N+ + +GP INA GR+ Sbjct: 280 VPLYGENRVLMAEGLEALQRSTRPGVQALADAADLDLQTVTSTGNIVFTLGPRINAAGRM 339 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ LL++ +E E A +L+ LN+ RR ++ + E+A + Q + Sbjct: 340 EHASSAVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEEEAVERAERQITSRS-PHAL 398 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WH G++G++A+ + E+F +P+ ++ + GS RSIEG +I + ++ E Sbjct: 399 VLYDPDWHLGVIGIVASSIVERFHKPTILLTHNGEAV-KGSARSIEGINIYEALADC--E 455 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN-- 489 +L + GGH AAG+++E + D F V + TP K+D ++ + Sbjct: 456 DVLTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDASVDLDTIGSV 515 Query: 490 -IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD---SETLQA 543 +L+ GP+G NP PVF + + S R V +HL+ +D +T A Sbjct: 516 ADRFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRDASSGQTYDA 575 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 I F + Q G + + L N W G QL+ D E Sbjct: 576 IGFGMGEKLSVLRESQDTGTPVELLFSLEENTWNGRTTLQLKARDVRLDEA 626 >gi|94990295|ref|YP_598395.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS10270] gi|94543803|gb|ABF33851.1| Single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS10270] Length = 736 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 274/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ +R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L D +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ ++ +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKDSFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|162146848|ref|YP_001601309.1| single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter diazotrophicus PAl 5] gi|161785425|emb|CAP54974.1| putative single-stranded-DNA-specific exonuclease recJ [Gluconacetobacter diazotrophicus PAl 5] Length = 574 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 216/577 (37%), Positives = 306/577 (53%), Gaps = 9/577 (1%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 L G L I Q+ + DIV ++L R + A FL+P++R LMPDP L D D A Sbjct: 2 LADAGGRVGLMIAQQAGVSDIVGQMLAARGLDGRSAATFLDPTLRALMPDPSALRDMDPA 61 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R+ A+ E + +FGDYDVDGA + AL+ + L ++PDR+ +GYGPN Sbjct: 62 AERLADAVRRGETVAVFGDYDVDGACAAALVTQLLRDLGCPVLTHVPDRMTEGYGPNAPA 121 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 +E GA L++ VDCG+ + D L + D+IV+DHH+ + P A VNPNRLD Sbjct: 122 LEALAARGATLVVCVDCGTAAGDILAGLAGR-ADIIVLDHHKAEGPPPPVLATVNPNRLD 180 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGL 259 SGQ LCAAGV FL V R LR+ DL++ LD+VALATVCDV+PL L Sbjct: 181 CTSGQRGLCAAGVAFLAAVATVRTLRRAGWFAARPEPDLMAFLDIVALATVCDVMPLTDL 240 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 NRA V +GL + R+ GL AL+E P++A G+ +GP INAGGRI ES LG Sbjct: 241 NRALVTQGLKILARRQRTGLDALLEVAGARDPLSAFTCGFALGPRINAGGRIAESGLGLD 300 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL+ DD+ E LA +LD +N+ R+ +E+ +L++A + +Q V+++ G WH Sbjct: 301 LLLCDDAAEARRLAERLDAVNRRRQTVETTILDRAMDEAASQRAA--GRGVLLLSGRDWH 358 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 PG+VG++A R+KE+F RP + EDG GS RS+ D+G + A + G+L GGG Sbjct: 359 PGVVGIVAGRIKERFNRPVLVGAELEDGTVKGSSRSVADLDLGAAIIAARQAGLLTTGGG 418 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAG ++ R L DF + AL I+GV++ + L + Sbjct: 419 HAMAAGFSLPREGVPALHDFLEARLAGA-TALPDATDVLIEGVVHVAGATTELATDIGRL 477 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEF 556 P+GAGN P+ A P ++ + L++ E L+A+ FR P Sbjct: 478 APFGAGNDEPILAIPRVRVVRADRIGREGNTLRVLVEGEGGGPRLKALLFRADDHPATPI 537 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L +H+ G L W G + DA+ Sbjct: 538 LEDRNAPPLHLAGWLRAESWNGRVSAGFFIRDAAIAT 574 >gi|312622993|ref|YP_004024606.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor kronotskyensis 2002] gi|312203460|gb|ADQ46787.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor kronotskyensis 2002] Length = 798 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 173/577 (29%), Positives = 295/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW+ + + I + I + +VL NR + + + FLNPS++ L +P + Sbjct: 6 KRWILKDNSNIEDMDIEIDGR-KIKPQIVKVLNNRGIQEKEEIEKFLNPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + I QAI +++I+GDYD DG S L+ L + + YIP+R DG Sbjct: 64 LPDMKEAVKIINQAILCKSRVLIYGDYDCDGVTSTYLLYSVLKNF-LPTIYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + + L+ITVD G ++ + ++Y +G VI+ DHH+ K A A+ Sbjct: 123 YGLNFDVLKK-LEDKFDLLITVDTGISAQNEVKYLKEKGKTVIITDHHEPKEVLPEADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D + L GV F +L + +N L LD+VA+ T+ DV+ Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KNSGINLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR GL V + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRVLAKFGLKVLKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ D + E +A KLD N+ R+ +E +++A++ + + I + + V Sbjct: 295 DANLAVSLLLEQDIIKAESIAKKLDEENRKRQEIEEKTIKEAQSLI-NKNKGILRKKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ ++G GSGRSI+GF++ + + E Sbjct: 354 LSNGSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAE-- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P ++D VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + ++ Q ++D Sbjct: 527 LEDEDELISMKKVDIVCKLEKNLFNSVRKNQFNIIDI 563 >gi|160900838|ref|YP_001566420.1| single-stranded-DNA-specific exonuclease RecJ [Delftia acidovorans SPH-1] gi|160366422|gb|ABX38035.1| single-stranded-DNA-specific exonuclease RecJ [Delftia acidovorans SPH-1] Length = 572 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 174/581 (29%), Positives = 266/581 (45%), Gaps = 29/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + +A A+ Q + ++A++ R V L+ + L+P P L Sbjct: 2 KIIPREIPAQQASALRQA-GVHPLLAQLYAARGVCSADE---LDDTPARLLP-PSGLLGM 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 + A R + AI ++ I DYD DGA + A+ R L + +PDR+VDGYG Sbjct: 57 EAAVRLLADAIERGLRLCIVADYDCDGATACAVGWRGLRMLGATEVSYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P + + GA++++TVD G S + + A G+ V+V DHH + A A+VNP Sbjct: 117 TPPIARRVKETGAEVMVTVDNGIASVEGVAEAKALGLQVVVTDHHLPGNHLPLADAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255 N+ + GV+F VL+ + LR + L +LL LVAL TV DVV Sbjct: 177 NQPGCSFESKSMAGVGVMFYVLLALRAELRARGRFDKASQPRLEALLPLVALGTVADVVR 236 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 L NR V GL RR Q PGL AL E + T + G+ +GP INA GR+ + Sbjct: 237 LDANNRRLVALGLKQIRRGQMQPGLLALFEAAGRKAFAATTFDFGFALGPRINAAGRLSD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372 +G L +DD+ LA LD +N+ RR +E M EQA C+D + + I Sbjct: 297 MTIGIECLTTDDAGRAANLAQMLDAINRERRELEGGMREQALLMAEGLCEDGMTPPAAIS 356 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V +H G+VG++A+R+K++ RPSF + + + GSGRSI GF + + Sbjct: 357 VFDPDFHEGVVGIVASRIKDRMHRPSFVFAASGAPGHEHELKGSGRSIPGFHLRDALDLV 416 Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 G+L++ GGHAMAAG T+ F + A + A T + DG L+ Sbjct: 417 SKRHPGLLLRFGGHAMAAGCTIAEAGFAVFEKALAQVAQEWLDAATLTRRIETDGPLDPD 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 +++ L +G G P F ++ S R+V HL++ Q ET+ I F Sbjct: 477 FRKPEMVEQLN-LAVWGQGFAPPTF-SEQLEVLSQRLVGEKHLKLQLRHQ-GETVDGIWF 533 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + + +N WRG ++ Q + Sbjct: 534 GHTD---------PLPPSACIAFRMDINEWRGERKVQFLIE 565 >gi|294013199|ref|YP_003546659.1| single-stranded DNA-specific exonuclease [Sphingobium japonicum UT26S] gi|292676529|dbj|BAI98047.1| single-stranded DNA-specific exonuclease [Sphingobium japonicum UT26S] Length = 588 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 234/593 (39%), Positives = 334/593 (56%), Gaps = 15/593 (2%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66 L V SI G W G + D+V ++L+ R D + NP+IR Sbjct: 5 LNVTRSILGQPWRWRGGSADGRDPG-----YRPDDLVTQLLLARGCPRDAVEAHRNPTIR 59 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 MPDP + D D AA R+ A+ E + IFGDYDVDGA S AL++R L + A Y Sbjct: 60 HFMPDPSLFRDMDAAAERLADAVARGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPY 119 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDR+++GYGP+ + + EGA LI+TVDCG+ ++DAL A G+DV+V+DHH+ + Sbjct: 120 IPDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFDALAQAKAAGVDVVVVDHHKCAA 179 Query: 187 EEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSL 241 A ALVNPNRLD+ GHL A GV FL+ + R LR+ N L+ L Sbjct: 180 ALPEALALVNPNRLDEAEEAAAHGHLAAVGVAFLLGAALIRALRKRNWFAQRTEPPLMDL 239 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LD+VAL TV DV L GLNRA+V +GL V ++ N GL ALI+ ++ +LG+ + Sbjct: 240 LDIVALGTVADVAQLKGLNRAFVAQGLKVMAKRRNIGLSALIDASRLTRAPLCHDLGFAL 299 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGR+G+++LG RLL ++D E +A +LD+LN+ RR +E+A+ +AE + Q Sbjct: 300 GPRINAGGRVGKADLGVRLLTTEDPAEAAQIAQELDLLNEERRAIEAAVQAEAEELLAAQ 359 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 +V +V G WHPG++G++A R+KEK GRP+ ++ + DG G GSGRSI G D+ Sbjct: 360 G----NRAVALVSGAGWHPGVIGIVAGRIKEKAGRPAIVVAIDGDGTGKGSGRSISGVDL 415 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G V A + G+LV GGGHAMAAGLTV L DF + V ID Sbjct: 416 GAAVLAAKDSGLLVAGGGHAMAAGLTVAADKVDALADFLDERLSGAVAKARDDRALLIDA 475 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 VL + VN + +++ GPYGAG P P+ A ++ VV HL+ D ++ Sbjct: 476 VLAPAGVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVIKADVVGNGHLRAIMAGDDGRSI 535 Query: 542 QAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + IAFR + LG+ ++ R +R+ + G ++ W +L + DA+ + Sbjct: 536 KTIAFRQAESDLGQAILGAPRDRRLWIVGRAKIDDWGPRPAAELHLEDAAWAD 588 >gi|327183758|gb|AEA32205.1| single-stranded-DNA-specific exonuclease [Lactobacillus amylovorus GRL 1118] Length = 757 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 163/578 (28%), Positives = 272/578 (47%), Gaps = 32/578 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E + +K+ + I A++ R + D DF + + DP ++ Sbjct: 2 KWQQRTAEELDPS---LIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 59 DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + +G +LIITVD G T D ++YA G+D IV DHH + ++ AYA+V+ Sbjct: 119 PNIDRYHDIVADGTKLIITVDNGVTGIDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++ + I P +NA GR+ +N Sbjct: 228 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTLGSINETDIAFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ A + Q+ + +V+ Sbjct: 288 LAVELLLSDDDVEAQKIADQIEELNNQRKELTTEVYDKCMALIRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRSI GF++ ++ EE + Sbjct: 346 PDFHEGVLGLVANKIVEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEE-LFT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++ G L + +K H I D L ++ + Sbjct: 405 KFGGHDFACGLSMTEDKIGALREKLEKGFHVEGGLEIKE----YDMELPLQGLSPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+ P+F+ N + + H++ + +L I F Sbjct: 461 INQVGPFGTGDAQPIFSISNPTITQFFKIGKEKNHVKFNVAKKGG-SLAVIGFN------ 513 Query: 554 GEFLMQSRGKRM-HVTGHLCVNYWRGSKRCQLRVLDAS 590 +FL + + V L +N +R Q + Sbjct: 514 KDFLNNNLLPFIARVFVQLSLNTYRNKISLQGIIEGIE 551 >gi|312134593|ref|YP_004001931.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor owensensis OL] gi|311774644|gb|ADQ04131.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor owensensis OL] Length = 798 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 171/577 (29%), Positives = 298/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW+ + + I + I + +VL NR V + + FLNPS++ L +P + Sbjct: 6 KRWILKDNSNLESIDIEIDGR-KIKPQIIKVLNNRGVQEREEIEKFLNPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + I QAI + +++I+GDYD DG S L+ L + + YIP+R DG Sbjct: 64 LNDMKEAVKIISQAILHRSRVLIYGDYDCDGVTSTYLLYSNLRNF-LPTTYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + + ++ITVD G +S++ ++Y +G VI+ DHH+ K A A+ Sbjct: 123 YGLNLDVLKK-LEDKFDILITVDTGISSHNEIKYLKEKGKTVIITDHHEPKEVLPDADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D + L GV F +L + +N L LD+VA+ T+ DV+ Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR GL + + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRVLAKFGLKILKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ D+ + E +A +LD N+ R+ +E +++A+ ++ ++ + V Sbjct: 295 DANLAVSLLLEKDAIKAESIAKRLDEENRKRQEIEEKTIKEAQGLIVNNKSILK-KKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ ++G GSGRSI+GF++ + + E Sbjct: 354 LSNSSWHAGVVGIASSKITEKYYRPSLLLTLADEGVLKGSGRSIKGFNLFEALRNCAE-- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P ++D VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGDGNKYYKFFTGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N++ ++ Q ++D Sbjct: 527 LEDEDELVSMKKVDIVCKLEKNFFNSVRKNQFNIIDI 563 >gi|257064878|ref|YP_003144550.1| single-stranded-DNA-specific exonuclease RecJ [Slackia heliotrinireducens DSM 20476] gi|256792531|gb|ACV23201.1| single-stranded-DNA-specific exonuclease RecJ [Slackia heliotrinireducens DSM 20476] Length = 1102 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 159/573 (27%), Positives = 270/573 (47%), Gaps = 24/573 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 + AI Q+ +P VA +V V +++ A+ FLNP + +P + +AA Sbjct: 10 AEPSAVAAIQQEFGLPRFVAATMVAHGVKTLEEARHFLNPDLDEDWRNPYDIPQMKEAAD 69 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 R+ AI N+E I++FGD+D+DG ++ ++ R L +A+ IP R +GYG + + + Sbjct: 70 RVEAAIRNNETILVFGDFDLDGISATTVLTRGLRSLGADAHWLIPRRFEEGYGLSDAAIA 129 Query: 144 KFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + LIITVDCG + D + + G++++V DHH+ +V+P +D Sbjct: 130 RAQTECDPDLIITVDCGISCKDEAETVKSLGMELVVTDHHEPSENVPEGIIVVDPKCCED 189 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 L GV ++ ++ + + DL L TV D++PL NRA Sbjct: 190 N-PSSILAGVGVALKLVQVLGARFGE------PYLWRQYTDLATLGTVADLMPLRDENRA 242 Query: 263 YVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V GL P + ALI N+ +T+ NL + + P +NA GR+G++ L ++LL Sbjct: 243 LVADGLRQINTNPRPCIAALIGVCNVADKELTSTNLSFSLIPRLNAAGRMGDAGLAAKLL 302 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 + DD E + LA +LD +N RR +E+ + A+ + + D Q+A V V G+ WH G Sbjct: 303 MEDDFGEAQKLAAELDAVNDQRRSIEADLAAVAKEQA-EKIYDGQRALV--VAGEGWHEG 359 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 + G++A+RL +G PS + D + GSGRS+ ++ K V +LV+ GGHA Sbjct: 360 VKGIVASRLVNTYGVPSILFTITGD-EARGSGRSVGQVNLFKAVESL--SDMLVRFGGHA 416 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 A G+TV + + + +P P+ ID ++ + I ++ LE P Sbjct: 417 AAVGVTVPTDRLPEFNERLCAYMDS-LPESSFHPLITIDTPVDLDELTIENVEQLERLAP 475 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +G NP P N ++ + R V HL + + I F G + Sbjct: 476 FGQENPTPRLLARNVRIVNARAVGAAKNHLSCSLTD-GVSRVDGIMFHCEGIEG----LM 530 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + G + + ++ WRG ++ + + P Sbjct: 531 ACGGVVDAVFEVEIDEWRGRRKVKCMLKAVEPT 563 >gi|331269773|ref|YP_004396265.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum BKT015925] gi|329126323|gb|AEB76268.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum BKT015925] Length = 558 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 166/571 (29%), Positives = 275/571 (48%), Gaps = 37/571 (6%) Query: 47 LVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 + NRN+ + + AK FL S+ L P ++ D I+ AI +KI+++GDYD DG Sbjct: 1 MANRNIQNEEEAKKFLRASLEDLY-SPFLMQDMQNGIDIILDAIDEGKKIVVYGDYDADG 59 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S A++ + L N YIPDR +GYG + ++ +G +I+T D G ++ + Sbjct: 60 VTSTAILYKGLLELDANVEYYIPDRETEGYGMCSNRIKILKEQGTDIILTCDNGISAVEE 119 Query: 166 LQYATNQGIDVIVIDHHQVK---------SEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 ++ A G+ V++ DHH++ A A++NP R D LC AG+ F Sbjct: 120 VKLAKELGMQVVITDHHELPFKEEQGEREYIIPNADAIINPKRNDCEYPFKMLCGAGIAF 179 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + +Y + D+K ++L + T+CDVV L+G NR L + N Sbjct: 180 KFIQALYINVGIDDKKA-----YKFIELAGIGTICDVVDLVGENRIIAKNSLKMISNTTN 234 Query: 277 PGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GLK LI+ + + + + N+G+MIGP INA GR+ + L LLI+DD + + LA Sbjct: 235 LGLKCLIDVLGINNKEVKSYNIGFMIGPCINATGRLDTAALSVELLITDDEERAKELASI 294 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395 L+ LN+ R+ M +E+ V + ++ V+V+ + H I G++A +++EKF Sbjct: 295 LNDLNKTRQEMTMRNVEEIIDVV--ENSSFKEDKVLVIYKEDIHESIAGIVAGKVREKFN 352 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455 P+ ++ + GSGRSIE +++ + +L K GGH MAAGL+++ N Sbjct: 353 VPTIILT-KGKEMPKGSGRSIEEYNL--FEELLKCKELLDKFGGHPMAAGLSIKEENISE 409 Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 L + P KID + VN LI +E P+G GN +P+FA N Sbjct: 410 LRQRLNANCK--LTDNDIVPKIKIDKRIPLDIVNDELISEMEILEPFGKGNSSPLFAEKN 467 Query: 516 HKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTP-----------LGEFLMQSRG 562 + IRV+ L++T D E ++AI+F + L+ Sbjct: 468 VSVSQIRVIGKNQNTLKLTCIINDKEKIEAISFNKVNEFKEMLEVKFKNTFEKILLNLSN 527 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ + + +N + G++ QLR+ D E Sbjct: 528 LKLDLIFYPIINEFNGNRTVQLRIKDFRLSE 558 >gi|299531547|ref|ZP_07044953.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas testosteroni S44] gi|298720510|gb|EFI61461.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas testosteroni S44] Length = 579 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 174/588 (29%), Positives = 269/588 (45%), Gaps = 29/588 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A+ Q I ++A++ R V L+ + L+P P L Sbjct: 2 KIIPRSIPDGSVSALLQA-KIHPLLAQLYAARGVCSADE---LDDAPARLLP-PSGLRGI 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 D A + + AI +++ I DYD DGA + A+ +R L +A+ +PDR+VDGYG Sbjct: 57 DTAVQLLADAITAQKRLCIVADYDCDGATACAVGLRGLRMLGAAHADYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + GA ++ITVD G S + + A G+ V+V DHH A A+VNP Sbjct: 117 TAPISRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPLADAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 N+ + GV+F VL+ + LR + + L LL LVAL TV DVV Sbjct: 177 NQPGCEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVK 236 Query: 256 LIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313 L NR V GL R+ PG++AL E + + G+ +GP INA GR+ + Sbjct: 237 LDANNRRLVALGLKQIRKGVMQPGIRALFEASGRRFDMATTIDFGFALGPRINAAGRLAD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372 +G L ++D + LA LD +N+ RR +E +M E A C+D + I Sbjct: 297 MTIGIECLTTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAIS 356 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA 428 V +H G+VG++A+R+K+K RP+F + + + GSGRSI GF + + Sbjct: 357 VFDPDFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV 416 Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 G++++ GGHAMAAG T+ +F F + A + A T + DG L+ Sbjct: 417 SKRHPGLILRFGGHAMAAGCTIAEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQ 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 ++ LI+ + +G G P F ++ S R+V HL++ S+ + I F Sbjct: 477 WLDTGLIEQM-QLAVWGQGFAAPTF-SEELEITSQRLVGEKHLKLELLHHGSK-IDGIWF 533 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 R + L +N WRG ++ Q V A EG Sbjct: 534 NHTD---------PLPSRTTLAYRLDINEWRGERKVQFLVEAAQDFEG 572 >gi|260557919|ref|ZP_05830132.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii ATCC 19606] gi|260408710|gb|EEX02015.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii ATCC 19606] Length = 566 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 173/559 (30%), Positives = 263/559 (47%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L D A + QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALMM L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + I A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN +RR +E M +QA + + + Q + +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + + DG L SA+ + ++ +E GP+G P P Sbjct: 433 ENFEAFKNLFNDCVAAM-DESVFQATLWTDGELPLSALQLDTLNWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564 >gi|264676975|ref|YP_003276881.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas testosteroni CNB-2] gi|262207487|gb|ACY31585.1| single-stranded-DNA-specific exonuclease RecJ [Comamonas testosteroni CNB-2] Length = 579 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 174/588 (29%), Positives = 269/588 (45%), Gaps = 29/588 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A+ Q I ++A++ R V L+ + L+P P L Sbjct: 2 KIIPRSIPDGSVSALLQA-KIHPLLAQLYAARGVCSADE---LDDAPARLLP-PSGLRGI 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 D A + + AI +++ I DYD DGA + A+ +R L +A+ +PDR+VDGYG Sbjct: 57 DTAVQLLADAITAQKRLCIVADYDCDGATACAVGLRGLRMLGAAHADYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + GA ++ITVD G S + + A G+ V+V DHH A A+VNP Sbjct: 117 TAPISRRVKETGADMLITVDNGIASVEGVAVAKELGMSVVVTDHHLPGDHLPLADAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 N+ + GV+F VL+ + LR + + L LL LVAL TV DVV Sbjct: 177 NQPGCEFASKSMAGVGVMFYVLLALRTELRNRGRFDRHNQPRLEQLLPLVALGTVADVVK 236 Query: 256 LIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGE 313 L NR V GL R+ PG++AL E + + G+ +GP INA GR+ + Sbjct: 237 LDANNRRLVALGLKQIRKGVMQPGIRALFEASGRRFDMATTIDFGFALGPRINAAGRLAD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372 +G L ++D + LA LD +N+ RR +E +M E A C+D + I Sbjct: 297 MTIGIECLSTEDVSRADNLARMLDSINRERREIEVSMREHALLMAEGLCEDGMTPPPAIS 356 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA 428 V +H G+VG++A+R+K+K RP+F + + + GSGRSI GF + + Sbjct: 357 VFDPDFHEGVVGVVASRIKDKLHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV 416 Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 G++++ GGHAMAAG T+ +F F + A + A T + DG L+ Sbjct: 417 SKRHPGLILRFGGHAMAAGCTIAEAHFDEFEKAFAQVAREWLDAATLTRRLETDGPLSPQ 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 ++ LI+ + +G G P F ++ S R+V HL++ S+ + I F Sbjct: 477 WLDTGLIEQM-QLAVWGQGFAAPTF-SEELEITSQRLVGEKHLKLELLHHGSK-IDGIWF 533 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 R + L +N WRG ++ Q V A EG Sbjct: 534 NHTD---------PLPARTTLAYRLDINEWRGERKVQFLVEAAQDFEG 572 >gi|315640891|ref|ZP_07895987.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus italicus DSM 15952] gi|315483309|gb|EFU73809.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus italicus DSM 15952] Length = 761 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 168/577 (29%), Positives = 280/577 (48%), Gaps = 32/577 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 ++W+ + + ++ + +P+ A +L R + + A ++FL+PS+ L DP + Sbjct: 6 YQWLISENELSDSFVTSVIGR-QLPETFATLLWQRGIRDEEALENFLHPSLEKLH-DPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D D+A R+ QAI ++KI+I+GDYD DG S ++ L + Y+P+R DG Sbjct: 64 FYDMDRAIERVQQAIIENQKILIYGDYDADGITSTTILKEALDFLGADVEFYLPNRFADG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + + INEG QLIITVD G + ++A+ YA + G+DVIV DHH++ + AYA+ Sbjct: 124 YGPNQRVYSEKINEGVQLIITVDNGVSGHEAIDYANSVGVDVIVTDHHELPEQLPNAYAI 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P L GV F + + L ++ LDLVA+ T+ D+V Sbjct: 184 IHPRHPKGHYPFKELAGVGVAFKFVCALLDEL-----------VVESLDLVAIGTIADMV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 L NR V GL R+ GL+ LI + + +++G+ + P +NA GR+ + Sbjct: 233 SLTDENRILVAFGLQAIRQTERMGLQELIRVSQVVPEELDDKSVGFSLAPRLNALGRLSD 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + + LL + D Q+ + LA ++D N R+ + + + +A K+ + V+ Sbjct: 293 ATIAVELLTTFDEQKAKTLAQEIDQKNTERKQIVADVFAEASQKINVDNQ------IHVI 346 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G++G++A R+ ++ G+P+ ++ +G GSGRSIE FD+ + + + Sbjct: 347 VGENWHEGVLGIVAGRIMQQTGKPTIVLTKLVNGVAKGSGRSIESFDL--FQTLLPLKEL 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH A GL++E+ L + P +IDG L + I Sbjct: 405 FLSFGGHHSAVGLSIEQNQIDTLQQSLNDYVLTRGIHFTGLP-LRIDGTLKIEEATVPFI 463 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 L++ P+G N P F F K R++ HL+ S +L IAF Sbjct: 464 KSLQTLAPFGMDNRYPKFLFSEIKATDNRLIGAEKNHLKGQLSD-GSASLPYIAF----- 517 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 G +L + + G L +N W QL V D Sbjct: 518 QFGSYLTDFSSDNLSIVGELTLNSWNNHVTPQLMVDD 554 >gi|299768409|ref|YP_003730435.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter sp. DR1] gi|298698497|gb|ADI89062.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter sp. DR1] Length = 566 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 176/559 (31%), Positives = 263/559 (47%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L + A I QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVESEQELE----LKLKNLLAP-QLKGLETAVALIDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDTAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCDFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRSRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ S + A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREASSLRAQDLGFVLGPRINAAGRMESMRIGIECLLADSMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E M +QA + + + Q +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDIPPALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I M+ E+ + GGHA AAGLT+ + Sbjct: 373 FHRPAIVFAPDEDGVHIKGSARSIDGVHIRDMIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + + DG L ASA+ + +D +E GP+G P P Sbjct: 433 ENFDAFKTVFTGCVAAM-EESLFQATLWTDGELPASALQLDTLDWIEQLGPWGQKFPFPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D T AIAF G F +H+ Sbjct: 492 FEG-HFKVVDYRWLKETHLKLRLAL-DQYTFDAIAFNAA----GRFEFNPMRDEVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N ++G+ QLR++ Sbjct: 546 IDRNVFKGNVNLQLRIVHL 564 >gi|288940593|ref|YP_003442833.1| single-stranded-DNA-specific exonuclease RecJ [Allochromatium vinosum DSM 180] gi|288895965|gb|ADC61801.1| single-stranded-DNA-specific exonuclease RecJ [Allochromatium vinosum DSM 180] Length = 577 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 184/566 (32%), Positives = 277/566 (48%), Gaps = 23/566 (4%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++++ + +R +S P + L P L + A R+V AI + + I++ G Sbjct: 22 DELLSVLYAHRGLSDPAEAA---PGLGTLAPV-TALYGMEAAVNRLVAAIRSEQSILVVG 77 Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 DYD DGA AL +R L + +P R +GYG +P+++E +GA +I+TVD Sbjct: 78 DYDADGATGSALAVRGLRDLGARRVSFLVPSRFSNGYGLSPAVVEAACGQGADVILTVDN 137 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S+ A+ A G+ V+V DHH A A+VNPN+ HL GVVF + Sbjct: 138 GISSHAAMARARELGLSVVVTDHHLPGDALPEADAIVNPNQPGCGFPSKHLAGVGVVFYL 197 Query: 219 LVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 L + LR+ +L LDLVAL TV DVV L NR V +GL R + Sbjct: 198 LAALRGRLRESGWFGADRPEPNLAERLDLVALGTVADVVSLDRNNRILVEQGLRRVRAGR 257 Query: 275 GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 G+ AL++ TA + G+ + P +NA GR+ E +LG L++DD +A Sbjct: 258 ACAGVLALLQVAGRDPARATAADFGFFVAPRLNAAGRLTEMSLGVECLLTDDPDRALAMA 317 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKE 392 +LD LN+ RR +E AM E AEA + D + + G+ WH G+ G++AARL+E Sbjct: 318 QQLDALNRERRAIEGAMKEAAEAVLDALILDGDSLPPGLCLFGEDWHQGVSGIVAARLRE 377 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 ++ RP+ A + DG+ GSGRSIEG + + + + GGHAMAAGLT+ Sbjct: 378 RYHRPTIAFADAGDGRLRGSGRSIEGLHLRDAIDWVDRRHPELIEYFGGHAMAAGLTLRP 437 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 D F + + + TP + DG L A + + + L AGP+G P P Sbjct: 438 GCLEPFRDAFVEAVRVQLGDIPPTPEIRSDGALPAELLTLETAEALRFAGPWGKDFPEPR 497 Query: 511 FAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ R+V HL++ ++AI F LGE + +RG + + Sbjct: 498 FD-DVFEVVEARLVGDDRRHLKLRVAPPGGAVIEAIGFG-----LGERIEAARGA-VRLV 550 Query: 569 GHLCVNYWRGSKRCQLRVLDAS-PVE 593 L VN +RG + QL V + PVE Sbjct: 551 YRLDVNSYRGRQSLQLLVDHLADPVE 576 >gi|302871303|ref|YP_003839939.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor obsidiansis OB47] gi|302574162|gb|ADL41953.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor obsidiansis OB47] Length = 798 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 174/577 (30%), Positives = 299/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 RW+ N + I K I + +VL NR V + + FLNPS++ L +P + Sbjct: 6 KRWILKDSSNLENIDIEIDGK-KIKPQIIKVLNNRGVQEREEIERFLNPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + I QAI + +++I+GDYD DG S L+ L + + YIP+R DG Sbjct: 64 LNDMKEAVKIISQAILHKSRVLIYGDYDCDGVTSTYLLYSNLRNF-LPTTYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + + ++ITVD G+++++ ++Y +G VI+ DHH+ K A A+ Sbjct: 123 YGLNLDVLKK-LEDKFDVLITVDTGTSNHNEVKYLKEKGKTVIITDHHEPKEVLPDADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R D + L GV F +L + +N L LD+VA+ T+ DV+ Sbjct: 182 VNPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR GL + + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRVLAKFGLKILKNTKNVGLKKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ D+ + E +A KLD N+ R+ +E +++A+ ++ ++ + V Sbjct: 295 DANLAVSLLLEKDAIKAESIAKKLDEENRKRQEIEEKTIKEAQGLIVKDKSILK-KKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ ++G GSGRSI+GF++ + + E Sbjct: 354 LSNSSWHAGVVGIASSKITEKYYRPSLLLTLADEGILKGSGRSIKGFNLFEALKNCAE-- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P ++D VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLPVDNVDKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLIVENFRFMGDGNKYYKFFAGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + +++ Q ++D Sbjct: 527 LEDEDELVSMKKVDIVCKLEKNIFNSARKNQFNIIDI 563 >gi|227892585|ref|ZP_04010390.1| recombination protein J [Lactobacillus ultunensis DSM 16047] gi|227865570|gb|EEJ72991.1| recombination protein J [Lactobacillus ultunensis DSM 16047] Length = 772 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 158/578 (27%), Positives = 275/578 (47%), Gaps = 32/578 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E + + +K+ + I A++ R ++ D DF + + DP ++ Sbjct: 17 KWQQNKAEE---LSSDLVEKYQLSPIAAQLFALRGINTDEKLDFWFNATEENLADPSLMH 73 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 74 DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 133 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T D ++YA + G+D IV DHH + + A A+V+ Sbjct: 134 PNIDRYKDIVADGTKLIITVDNGVTGIDEVKYAKDHGVDTIVTDHHTFQENKPDACAIVH 193 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 194 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 242 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 243 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTMGTINETDVGFNIAPRLNAVGRLANAN 302 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ + Q+ + +V+ Sbjct: 303 LAVELLLSDDDVEAQKIADQIEDLNNQRKELTTKVYDRCMQLIRENSW--QKQNTLVLYN 360 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRSI+GF++ ++ ++ + Sbjct: 361 PDFHEGVLGLVANKIVEKTHKPTIVLTKNKKGEIKGSGRSIDGFNLFDALNPL-KDDLFT 419 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++ L + ++ H D L ++ + Sbjct: 420 KFGGHDFACGLSMTEDKIAPLREKLEQGFHVEGGLESRK----YDMELPMKDLSPQTLAK 475 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+ PVF+ N + + H++ T +++ +L I F Sbjct: 476 INQVGPFGTGDAQPVFSISNPTITQFYKIGKDKNHVKFT-AAKNGGSLSVIGFN------ 528 Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590 +FL + + L +N +R Q + Sbjct: 529 KDFLNNNLLPFISKVFVQLSLNTFRKQVSLQGIIEGIE 566 >gi|169794365|ref|YP_001712158.1| ssDNA exonuclease, 5'--> 3' specific, Mg dependent [Acinetobacter baumannii AYE] gi|213159057|ref|YP_002321055.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB0057] gi|215481922|ref|YP_002324104.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB307-0294] gi|301344656|ref|ZP_07225397.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB056] gi|301512802|ref|ZP_07238039.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB058] gi|301597475|ref|ZP_07242483.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB059] gi|332850173|ref|ZP_08432560.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii 6013150] gi|332868950|ref|ZP_08438509.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii 6013113] gi|169147292|emb|CAM85153.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter baumannii AYE] gi|213058217|gb|ACJ43119.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB0057] gi|213989013|gb|ACJ59312.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii AB307-0294] gi|332731022|gb|EGJ62328.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii 6013150] gi|332732993|gb|EGJ64195.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii 6013113] Length = 566 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 174/559 (31%), Positives = 262/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L D A + QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALMM L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + I A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN +RR +E M +QA + + + Q + +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + I DG L SA+ + ++ +E GP+G P P Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564 >gi|167040105|ref|YP_001663090.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter sp. X514] gi|166854345|gb|ABY92754.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter sp. X514] Length = 811 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 179/576 (31%), Positives = 296/576 (51%), Gaps = 23/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + + + + +P I+A +L R +++ K FLNP ++ L P +L Sbjct: 5 YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 61 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + + I I+GDYDVDG + +++ L + YIP+R+V+GY Sbjct: 62 RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 121 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LII+VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 122 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 181 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ D L GV F + + + LLD+V++ T+ D+VP Sbjct: 182 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 230 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKALI+ +S I ++G+++ P +NA GR+ + Sbjct: 231 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLQNSEIDEYHVGFILAPRLNAAGRLRSA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS D +E+E +A L+ N NR+ +E+ +L++A K+ + D+ + VIV+ Sbjct: 291 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 349 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ K + + + L Sbjct: 350 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P +ID + ++I + Sbjct: 407 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 466 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + + +N + +D + + F Sbjct: 467 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 526 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + V G + +N W G + + V D Sbjct: 527 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 558 >gi|292491002|ref|YP_003526441.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus halophilus Nc4] gi|291579597|gb|ADE14054.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus halophilus Nc4] Length = 578 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 182/567 (32%), Positives = 276/567 (48%), Gaps = 25/567 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ RV R + A L+ ++ L P P +L++ A + +A+ +I++ Sbjct: 20 IHPVLRRVYRARGI---KAPGELDYALEQL-PSPWLLSNIKTAVALLAEALEQGWRILVV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITV 156 D+D DGA S AL +R L + +P+R + GYG P+++ E LIITV Sbjct: 76 ADFDADGATSCALAVRALRLMGAGEVDYLVPNRFIHGYGLTPAIVAEAMARGRPDLIITV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +Q A I V+V DHH S A A+VNPN DD G L GV+F Sbjct: 136 DNGISSIDGVQTAQEANIRVLVTDHHLPGSVLPAADAIVNPNLPDDPFPSGCLAGVGVIF 195 Query: 217 LVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVA 271 V++ + LR+ L LLDLV L TV DVVPL +NR V +GL + Sbjct: 196 YVMLALRAYLREQGWFARSGQGEPTLAPLLDLVTLGTVADVVPLDQVNRTLVAQGLARIR 255 Query: 272 RRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 R + G++AL S T +LG+ +GP +NA GR+ + +LG L++D + + Sbjct: 256 RHRCCVGIQALAACARRSLENFTTSDLGFGVGPRLNAAGRLEDMSLGIACLLTDSPEVAQ 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV--IVVEGDRWHPGIVGLLAA 388 A +LD LN+ RR +ES M QA + ++ + + WH G++GLLA+ Sbjct: 316 QQASELDALNRERREIESTMQNQAAIHLENLVFPGEEKGPLGYCLFDESWHQGVIGLLAS 375 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R++E+ RP A + ++ + GS RSI G I + G+L K GGHAMAAGL Sbjct: 376 RIREQVYRPVIAFAPHDNEELKGSARSIPGLHIRDALDRVATSYPGLLSKFGGHAMAAGL 435 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++ RV+ F + + V DG L ++ L + L GP+G G Sbjct: 436 SLPRVHLEPFRAAFLEVLEAQLDEETLEDVILSDGEL--DRWDLELAETLRDGGPWGQGF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P+F ++ R+V AHL++T + + + L+ IAFR E G ++ Sbjct: 494 PEPLFDG-VFWVEGFRLVGEAHLKLTLTTLGNRQQLEGIAFRCLPPDWLEV-----GMKI 547 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L VN +R + QL V PV Sbjct: 548 RLAYRLDVNIYRDLRTVQLVVEYLEPV 574 >gi|300914189|ref|ZP_07131505.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter sp. X561] gi|307724576|ref|YP_003904327.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter sp. X513] gi|300889124|gb|EFK84270.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter sp. X561] gi|307581637|gb|ADN55036.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter sp. X513] Length = 815 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 179/576 (31%), Positives = 296/576 (51%), Gaps = 23/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + + + + +P I+A +L R +++ K FLNP ++ L P +L Sbjct: 9 YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + + I I+GDYDVDG + +++ L + YIP+R+V+GY Sbjct: 66 RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LII+VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ D L GV F + + + LLD+V++ T+ D+VP Sbjct: 186 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKALI+ +S I ++G+++ P +NA GR+ + Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLQNSEIDEYHVGFILAPRLNAAGRLRSA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS D +E+E +A L+ N NR+ +E+ +L++A K+ + D+ + VIV+ Sbjct: 295 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ K + + + L Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P +ID + ++I + Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + + +N + +D + + F Sbjct: 471 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + V G + +N W G + + V D Sbjct: 531 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 562 >gi|307295021|ref|ZP_07574863.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobium chlorophenolicum L-1] gi|306879495|gb|EFN10713.1| single-stranded-DNA-specific exonuclease RecJ [Sphingobium chlorophenolicum L-1] Length = 588 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 233/593 (39%), Positives = 336/593 (56%), Gaps = 15/593 (2%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIR 66 L + SI G W G + D+V ++L+ R D + NP+IR Sbjct: 5 LNITRSILGQPWRWRGGSADGRDPG-----YRPDDLVTQLLLARGCPRDAVEAHRNPTIR 59 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 MPDP + D D AA R+ +A+ E + IFGDYDVDGA S AL++R L + A Y Sbjct: 60 HFMPDPSLFRDMDAAAERLAEAVMRGEDVRIFGDYDVDGATSAALLIRLLRDLGLAARPY 119 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDR+++GYGP+ + + EGA LI+TVDCG+ ++DAL A G+DV+V+DHH+ + Sbjct: 120 IPDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFDALAMAKAAGVDVVVVDHHKCTT 179 Query: 187 EEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSL 241 A ALVNPNRLD+ GHL A GV FL+ + R+LR+ N L+ L Sbjct: 180 LLPEALALVNPNRLDEAEEAAAHGHLAAVGVAFLLGAALIRVLRKRNWFAARSEPPLMEL 239 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LD+VAL TV DV L GLNRA+V +GL + ++ N GL ALI+ ++ +LG+ + Sbjct: 240 LDIVALGTVADVAQLKGLNRAFVAQGLKIMAKRRNIGLSALIDASRLTRAPLCHDLGFAL 299 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGR+G+++LG RLL ++D E +A +LD+LN+ RR +E+A+ +AE + Q Sbjct: 300 GPRINAGGRVGKADLGVRLLTTEDPAEAAKIAAELDLLNEERRAIEAAVQAEAEELLAAQ 359 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 +V +V G WHPG++G++A R+KEK GRP+ ++ +EDG G GSGRSI G D+ Sbjct: 360 G----NRAVALVSGAGWHPGVIGIVAGRIKEKAGRPAIVVAIDEDGTGKGSGRSISGVDL 415 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 G V A + G+LV GGGHAMAAGLTV L DF V ID Sbjct: 416 GAAVLAAKDSGLLVAGGGHAMAAGLTVAAGKVDALADFLDARLSGAVAKARDDRALLIDA 475 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 VL + VN + +++ GPYGAG P P+ A ++ VV HL+ D ++ Sbjct: 476 VLAPAGVNPDFVAAIDAGGPYGAGWPAPLIASGPMRVIKADVVGNGHLRAIMAGDDGRSI 535 Query: 542 QAIAFRVYGTPLGEFLM-QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + IAFR + LG+ ++ R +R+ + G ++ W +L + DA+ + Sbjct: 536 KTIAFRQAESDLGQAILGAPRDRRLWIAGRAKIDDWGPRPAAELHLEDAAWAD 588 >gi|118444341|ref|YP_878389.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium novyi NT] gi|118134797|gb|ABK61841.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium novyi NT] Length = 588 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 166/599 (27%), Positives = 292/599 (48%), Gaps = 40/599 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + + + ++ I DI A++L NR + S + AK F+ S+ L P ++ Sbjct: 3 QWRLKVTKCDTKL---LAKQCNISDITAKILANRKIQSEEEAKKFIKASLDDLY-SPFLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + ++ AI +KI+++GDYD DG S +++ + L N YIPDR +GY Sbjct: 59 KDMQQGVDIVLDAIDEGKKIVVYGDYDADGVTSTSILYKGLLEIDANVEYYIPDREAEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G + + ++ ++GA++I+T D G ++ + +++A G+ V+V DHH++ Sbjct: 119 GMSSNRLKILKDQGAEVILTCDNGISAVEEVKFAKELGMQVVVTDHHELPFKEEEGERKY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A++NP R D LC AG+ F + +Y L D+ +++ Sbjct: 179 IIPEADAVINPKRNDCTYPFKMLCGAGIAFKFIQALYVSLGLDDSDA-----YKFIEIAG 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 + T+CDVV L+ NR L + + N GL+ L+ + I + N+G+MIGP I Sbjct: 234 IGTICDVVDLVSENRIIAKNALKMMKSTSNLGLQCLMNALGINKEEIKSYNIGFMIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L LLI+ D + + LA L LN+ R+ M + +E+ V + Sbjct: 294 NATGRLDTAALSVELLITKDEERAKELANILYDLNKTRQEMTTRNVEEIIDVV--ENSSY 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +Q V+V+ + H I G++A +++E+F P+ ++ + GSGRSIE +++ Sbjct: 352 RQDKVLVIYKEDIHESIAGIVAGKIRERFNVPTIILT-KGKEMPKGSGRSIEEYNL--FE 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 ++ K GGH MAAGL+++ N +L + + P KID + Sbjct: 409 ELLKCREVIEKFGGHPMAAGLSIKEENIEKLRTMLNENC--TLTDEDIIPKIKIDKRIPL 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 S+V LI+ LE+ P+G GNP P+FA N K+ +IR++ +++T + D+E + A Sbjct: 467 SSVKEELIEELENLEPFGKGNPAPLFAEKNIKVLNIRIMGKDQNTIKLTCLTNDNEKIDA 526 Query: 544 IAFRVYG-----------TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 I F + + ++ + + +N + G + QLRV D Sbjct: 527 IIFNRADEFKDMVEKSLREKIETVIASPYNLKLDLIFYPMINEFNGYRNKQLRVKDFRV 585 >gi|225164350|ref|ZP_03726615.1| single-stranded-DNA-specific exonuclease RecJ [Opitutaceae bacterium TAV2] gi|224801030|gb|EEG19361.1| single-stranded-DNA-specific exonuclease RecJ [Opitutaceae bacterium TAV2] Length = 607 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 175/585 (29%), Positives = 288/585 (49%), Gaps = 22/585 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW+ + A+T+ +P ++A +LV V + A+ FLNP++ + DP L Sbjct: 37 RWLYEPAPA--AQIAALTEATHVPPVIAELLVRAGVGTPAAAERFLNPALASI-SDPFQL 93 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + A R+ QAI E I + GDYDVDG S AL++ L + +P R+ DGY Sbjct: 94 QNLQAAVVRLHQAILQREDITVLGDYDVDGVTSTALLVSILRRFGTSPRFVVPRRMEDGY 153 Query: 136 GPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G + S +++ + +L I +DCG+ S+D + Y GIDVIVIDHHQ K+ + L Sbjct: 154 GLSRSAIDRALEPGHPRLFIALDCGTNSHDEIAYLRGLGIDVIVIDHHQTKTGLLNDAIL 213 Query: 195 VNPNRLD--DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVC 251 +NP+ + HLC G+VF + + + LR +N + + LDL A+ TV Sbjct: 214 INPHVYPTENDDDWRHLCTVGLVFKLAHGLVKHLRSENHPGAHEVKMRDYLDLAAMGTVA 273 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGG 309 D+VPL G NR GL + + G++ L+E + + ++ + +GP INA G Sbjct: 274 DLVPLTGENRVIARNGLRILKTTTRSGVRTLMEVAGVRPGQELMPVDISFRLGPRINASG 333 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ +++L LL+S+D + + A +LD N+ R+ +E + E+AE + +Q D + Sbjct: 334 RLADASLSVELLLSNDEKFCKETATQLDAFNRERQDIERQITEEAERMIESQHLD---SP 390 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 IV+ G+ WHPG+VG++A R+ K+ RP + E DG GSGRSI+G ++ ++++ Sbjct: 391 GIVLFGENWHPGVVGIVAGRVCRKYNRPCVVLGTETDGSAKGSGRSIDGVNLVEVLAAC- 449 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 L GGH MA G+ +E+ + F + +T P I L ++ Sbjct: 450 -AAHLTSWGGHPMAVGVALEKEHLAAFRVQFAQSVLRQAGGALTAPTLNISAWLRPEEIH 508 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + LE P+G NP P+F N + V H + FE L +A++ Sbjct: 509 ETFMGELERMYPFGQANPEPIFGVRNVVFRYRPEVFREQHFRFQFEDSHGRRLFGVAWKQ 568 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + G+ +++ L N++ K QL ++D E Sbjct: 569 AHN------VPPAGEPINLAVRLAWNFFNDRKLLQLELVDWHRSE 607 >gi|113477606|ref|YP_723667.1| exonuclease RecJ [Trichodesmium erythraeum IMS101] gi|110168654|gb|ABG53194.1| exonuclease RecJ [Trichodesmium erythraeum IMS101] Length = 701 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 162/613 (26%), Positives = 283/613 (46%), Gaps = 53/613 (8%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW+ + I + + I ++A+ L+NR++ +I+ A+ FL+P L Sbjct: 14 LPNQRWLIHPEKPEI--TNNLAKTLEISPLIAQSLINRDISTIEEAQVFLDPGSIKLPSP 71 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D + A + I +KI I GDYD DG S AL++R H + IP R+ Sbjct: 72 IQEFPDLEIALNLLQTTISQKKKIAICGDYDADGMTSTALLLRSFKHLGAKVDYAIPSRM 131 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++E+F EG LI+TVD G ++Y + A G++VI+ DHH + E PA Sbjct: 132 QEGYGINERIIEEFHQEGVSLILTVDNGISAYKPIARARELGLNVIITDHHDIPPELPPA 191 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP + + S + GV +++ + + + L + + + LL+L L T+ Sbjct: 192 NAILNPKLISETSPYQGVAGVGVAYILALSLAKRLDKLSGLT-----DPLLELFTLGTIA 246 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER-------------VNISSPITAENLG 298 D+ PL G+NR +V +GL + G++ALI+ + +++G Sbjct: 247 DLAPLTGVNRRWVKQGLQLLPHSQLAGVRALIQVSDVKAQAQGNLKETKNQKSLKPDDIG 306 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + +GP INA GRI + + LL +DD + A + +NQ R+ + + + +QA Sbjct: 307 FRLGPRINAVGRIADPQIVIELLTTDDKEVAATRAKQCQEINQTRQELCAEIEQQAITWC 366 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----------- 407 + ++ V+VV WH G++G++A+RL E++G P F S+EE+ Sbjct: 367 EESQINFEKERVLVVVQPGWHHGVIGIVASRLVERYGVPVFIGSYEEEQGPDANLASSPG 426 Query: 408 ----------KGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 GS R I F + + + F + +L K GGH A G ++ N Sbjct: 427 VMFASSETTYTIRGSARGIPEFHVFEGLQFC--DDLLGKYGGHKAAGGFSLPGKNLDEFR 484 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 +FAH + P+ ID +N L ++ P G N +P+F N + Sbjct: 485 SRLSEFAHQCLKIHHLKPLITIDAEAEFKELNFDLYHQIDLLHPCGIENRSPIFWTSNVR 544 Query: 518 LQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577 + ++V H+++T SE ++AIA+R G++ + + L N + Sbjct: 545 VAEQKIVGAGHIKLTLIK--SEIIKAIAWR-----WGDYFR--LPSLVDIAYKLRENTFN 595 Query: 578 GSKRCQLRVLDAS 590 G +L ++ Sbjct: 596 GQTSIELELVGVR 608 >gi|172058100|ref|YP_001814560.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium sibiricum 255-15] gi|171990621|gb|ACB61543.1| single-stranded-DNA-specific exonuclease RecJ [Exiguobacterium sibiricum 255-15] Length = 769 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 181/592 (30%), Positives = 274/592 (46%), Gaps = 31/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S W+ + + + + VA +LV R D AK FL DP Sbjct: 4 SKKTWIDK--DVDSLKIDELADQVNVSRQVAHLLVQRGFDTADQAKAFLETDQTAFH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + D K RI QA E I+I+GDYDVDG +S A++ L A YIP+R Sbjct: 61 FLFQDMTKVITRIQQAADEGEMILIYGDYDVDGVSSAAILWHALIEVGAMAECYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + EG L+ITVDCG + + G+D+I+ DHH+ K A+ Sbjct: 121 EGYGPNEAAFRWAAEEGFGLVITVDCGISGIEEAAVLKELGVDLIITDHHEAKDVLPDAF 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P +D L AGV F V + + + LLDL L T+ D Sbjct: 181 AMIHP-GVDSNYPYSKLAGAGVAFKVAHALLGRVPE-----------ELLDLAVLGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRI 311 +VPLIG NR KG+ PG+ AL + + + +T E++G+ GP INA GR+ Sbjct: 229 LVPLIGENRLLAAKGIEALNASERPGILALRKVCSLVEDELTEESVGFAFGPRINAAGRL 288 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +L+++ +E E LA +LD N+ R+ + + E+A A V V+ Sbjct: 289 DSAMPALEMLLAETMEEAEPLAEQLDQQNKQRQDIVKKIAEEATALVEQHYLS---DRVL 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV+ D+W+PG+VG++A+RL EK+ RP + + E G GSGRSI FD+ Sbjct: 346 VVDSDQWNPGVVGIVASRLVEKYHRPVILLCHDAEKGTAKGSGRSIAAFDL--FAELNQT 403 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 IL GGH AAG+T+ N L + A + +P +ID L S V+I Sbjct: 404 ADILPHFGGHPAAAGMTLSSENVPVLRERLNAQAAS-LPDEAFIATTEIDLRLRVSDVSI 462 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 LI+ + P+G GNP+P ++ ++ + HL+ + L I F Sbjct: 463 GLIEEMGRLSPFGMGNPSPRVVVEGANIRDLKRIGRDLTHLK-VLVTDGKTELDGIGFGF 521 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + + G L +N W G ++ QL + D + V+ F + Sbjct: 522 GDA----VDEVSSLAEVSLMGSLNINEWNGFRKPQLMIQDLAVVDYQLFDYR 569 >gi|325957035|ref|YP_004292447.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus 30SC] gi|325333600|gb|ADZ07508.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus 30SC] Length = 757 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 164/578 (28%), Positives = 273/578 (47%), Gaps = 32/578 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E + +K+ + I A++ R + D DF + + DP ++ Sbjct: 2 KWQQRTAEELDPS---LIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + +IPDR DGYG Sbjct: 59 DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVYYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + +G +LIITVD G T D ++YA G+D IV DHH + ++ AYA+V+ Sbjct: 119 PNIDRYHDIVADGTKLIITVDNGVTGIDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTLGSINETDIGFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ A + Q+ + +V+ Sbjct: 288 LAVELLLSDDDVEAQKIADQIEELNNQRKELTTEVYDKCMALIRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRSI GF++ ++ EE + Sbjct: 346 PDFHEGVLGLVANKIVEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEE-LFT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++ G L + +K H I D L ++ ++ Sbjct: 405 KFGGHDFACGLSMTEDKIGALREKLEKGFHVEGGLEIKE----YDMELPLQGLSPQILAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+ P+F+ N + + H++ + +L I F Sbjct: 461 INQVGPFGTGDAQPIFSISNPTITQFFKIGKEKNHVKFNVAKKGG-SLAVIGFN------ 513 Query: 554 GEFLMQSRGKRM-HVTGHLCVNYWRGSKRCQLRVLDAS 590 +FL + + V L +N +R Q + Sbjct: 514 KDFLNNNLLPFIARVFVQLSLNTYRNKISLQGIIEGIE 551 >gi|33152417|ref|NP_873770.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus ducreyi 35000HP] gi|33148640|gb|AAP96159.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus ducreyi 35000HP] Length = 573 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 182/563 (32%), Positives = 282/563 (50%), Gaps = 20/563 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +RN++ L + L P +L + D+A +++A +I+I GD Sbjct: 20 PLLNRLYQSRNIAT---LHDLERGLEYLHR-PQLLANIDQAVALLIEAFQTDMRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFAKVDYLIPDRFSQGYGLSLAVAEAVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ ++ +QGI V+V DHH + A AL+NPN ++ L GV F V+ Sbjct: 136 ISSFEGVELLKSQGIKVLVTDHHLPAEKLPDADALINPNLVNCDFPSKALAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVP NR V +GL R P Sbjct: 196 LALRSRMRELALFKVAEPNLAELLDLVALGTVADVVPFDHNNRILVHQGLNRIRSGCCRP 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL + S + A +LG+ I P +NA GR+ +LG LLI+D+ LA +L Sbjct: 256 GIRALADIAKRDLSSLQAADLGFAIAPRLNAAGRLENMSLGVELLITDNIALAHQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +QA IV+ WH G++G+LA+R+K++F Sbjct: 316 DSLNQKRKAFEQEMKAEALAICAKLPSLMQKEQAHGIVLYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ + ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESEDSVYLKGSARSIAGLHMRDVLERIDSTYPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F F + + V DG L A + + + ++L+SAGP+G P P+ Sbjct: 436 DDFSTFQTVFDEIVDQFISPEQLQGVIYTDGELQADEMTLEIAELLQSAGPWGQHFPEPL 495 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F ++ R++ HL++ + D E AI F V + + K + Sbjct: 496 FEGQ-CRILQQRILAGKHLKLMIQFNDRFELYDAIWFNVDLRTFPDLSI----KHAQIVY 550 Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592 L +N +RG+K QLRV P+ Sbjct: 551 KLDINEFRGNKNIQLRVESLIPL 573 >gi|256822060|ref|YP_003146023.1| single-stranded-DNA-specific exonuclease RecJ [Kangiella koreensis DSM 16069] gi|256795599|gb|ACV26255.1| single-stranded-DNA-specific exonuclease RecJ [Kangiella koreensis DSM 16069] Length = 584 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 170/562 (30%), Positives = 269/562 (47%), Gaps = 20/562 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ NR + L+ ++ L+P L D A +V+AI +I+I G Sbjct: 29 SSVLNRIYSNRGI---QDAAELDYNLSQLLPY-HDLKGIDVAVELLVEAITEQRRILIVG 84 Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL L+ +P+R GYG +P L+E LI+TVD Sbjct: 85 DFDADGATSSALTKLVLTDFGAKYVEFLVPNRFEFGYGLSPELVEVAKELNPDLIVTVDN 144 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S ++ A GI V++ DHH E A A+VNPN+ D ++ GVVF V Sbjct: 145 GISSIAGVKAAQEAGIKVLITDHHLAGDELPQADAIVNPNQPGDTFPSKNMAGVGVVFYV 204 Query: 219 LVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 L+ + LR N +L LD+VAL TV DVVPL NR V GL + R Sbjct: 205 LLALRARLRDINWFTTQAIEEPNLAHNLDIVALGTVADVVPLDSNNRLLVHHGLRLIRAG 264 Query: 274 QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG+ AL++ +TA +LG+ +GP +NA GR+ + ++G L++DDS+ + L Sbjct: 265 RCRPGISALLQLAKRQLHKVTATDLGFAVGPRLNAAGRLDDMSIGIECLLADDSKTAKEL 324 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 A L LN +R+ +E M ++A +K+ + A + + WH G+VGLLA+R+K Sbjct: 325 ADTLHSLNSDRQQVEQEMQDEALSKLEEVDWHAGEFAHSVCLYEPHWHQGVVGLLASRIK 384 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVE 449 EK +P + ++ GS RS++ I ++ + K GGHAMAAGL++ Sbjct: 385 EKVNKPCIVFANADETSIKGSARSVKEVHIRDALALVDSRHPQLIEKFGGHAMAAGLSLA 444 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F+K +++ V + DG L + I L AGP+G G P P Sbjct: 445 LDKLEQFQQAFEKAVTDVLGGRAIEDVIETDGELMPQELTIETAVELTQAGPFGQGFPEP 504 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ + R+V HL++T + + +QAIAFR+ + +++ Sbjct: 505 AFDGE-FEVLNHRIVGENHLKLTLQKYGQQDPIQAIAFRIDVEDW----LSQPAQKIRAV 559 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 +N + QL + Sbjct: 560 YKPDINDYYNVPELQLMIQYFE 581 >gi|78186350|ref|YP_374393.1| RecJ exonuclease [Chlorobium luteolum DSM 273] gi|78166252|gb|ABB23350.1| exonuclease RecJ [Chlorobium luteolum DSM 273] Length = 571 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 162/577 (28%), Positives = 261/577 (45%), Gaps = 19/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 FRW L + A+ + + +AR L+NR + D A++F S L PL+ Sbjct: 4 FRWTILSADDAAVAAMM--ESINVSAPLARALLNRGIDTFDAARNFFRASFESLH-SPLL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D + A +R+++A+ EKIM++GDYDVDG A++ RFL + YI DR +G Sbjct: 61 LGDMEIAVKRVLKAVREGEKIMLYGDYDVDGTTGTAMLHRFLGGLGAEVSWYINDRFQEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG +P ++ + G L+ITVDCG + +A+ A G+DVIV DHH+ A A+ Sbjct: 121 YGISPEGIDAAASRGVGLVITVDCGIRANEAVSRARGLGMDVIVCDHHE-PDILPEAVAI 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP LC GV F + I D LD VA+AT D+V Sbjct: 180 LNPKVPGCRYPFRELCGCGVAFKFIQAIA-----DETGDGEKAWREYLDYVAIATAADMV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 L NR V +GL+ + L+ + + ++ + N+ + I P INA GR+G Sbjct: 235 ELTDENRVLVREGLVRIQSAPAMSLQEMFRVMKVAPKEVGMFNIAFGIAPRINAAGRMGS 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L+S+ + + + A L+ LN RR ++ ++E+AE + S IV+ Sbjct: 295 AQRAMEWLLSESAADARLHADGLEELNTLRRQTDADIMEKAEKMLDGHFASY--CSSIVL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+++ E+ P+ + G GS RS+EG D+ ++ + Sbjct: 353 YDESWHIGVLGIVASKMLERHYLPTVIMGGMN-GLVKGSVRSVEGLDVYGVLEEC--GDL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGH AAG+T+ N F + + + ID L I Sbjct: 410 LLQFGGHRQAAGVTLLPENLSAFRKRFDAASASRLGIRERQKELVIDSELRLEDAGEKFI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +LE P+G GN PVF ++ R++ H++ + I F Sbjct: 470 RVLEQFSPHGFGNREPVFMTKGLRVHGRPRLLKERHVKFSVRDGSGRFFDVIGFDRRDVY 529 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + L G + L W G + Q R+ D Sbjct: 530 --DALQGDSGAVFSMAYSLENRVWNGRAQLQCRLYDL 564 >gi|254479344|ref|ZP_05092681.1| single-stranded-DNA-specific exonuclease RecJ, putative [Carboxydibrachium pacificum DSM 12653] gi|214034710|gb|EEB75447.1| single-stranded-DNA-specific exonuclease RecJ, putative [Carboxydibrachium pacificum DSM 12653] Length = 820 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 185/578 (32%), Positives = 295/578 (51%), Gaps = 29/578 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RWV + + + + K+ + IVA++L +R V ++FL PS+ L+ P L Sbjct: 5 YRWVVR--ERDLKKIEELKVKYHLDGIVAQILSSRGVKG--VEEFLMPSLDRLI-SPFKL 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I + I I I+GDYDVDG S +L+ L + YIP+R+ +GY Sbjct: 60 KGVKEAKELIEKHIKEGSLITIYGDYDVDGITSTSLLYLALKKLGAKVDYYIPERLSEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +EK EG +L+ITVDCG T+ ++ A G+DVI+ DHH + E A ++ Sbjct: 120 GINEEALEKIAYEGTKLVITVDCGITALKEVEKAKKMGLDVIITDHHSIPEEIPKADVVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ L GV F + + LDLVAL TV DVVP Sbjct: 180 NPHLPG-AYPFSELAGVGVAFKLAQALI-----------GEQAFEFLDLVALGTVADVVP 227 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 LIG NR V +GL GN GLKALIE +S + ++G++I P +NA GR+ + Sbjct: 228 LIGENRVIVKEGLKRLNNTGNLGLKALIEIAGVSGRELDEYHIGFIIAPRLNAAGRLKSA 287 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLI+ D +E + +A L+ N R+ ME+ +L++A K+ + ++ VIV+ Sbjct: 288 EAAVRLLITSDEKEAQDIAKYLNEENLRRQNMENTILKEAIEKIEKEG--LKDDKVIVLW 345 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WHPG++G++++++ E +GRPS I + +G GSGRS+EGF+I K +++ + +L Sbjct: 346 QEGWHPGVIGIVSSKITEMYGRPSILIGLIGE-EGKGSGRSVEGFNIYKALNYC--KDLL 402 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 VK GGH MA GLT+++ N D ++A V + P KID V+ ++ + Sbjct: 403 VKYGGHEMAGGLTIQKENLKLFKDKINEYADRFVKEIDLVPALKIDAVVKKDKADLGIAK 462 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 ++ P+G GNP P+ F + I + + H++ +D + + F Sbjct: 463 KIQQLKPFGVGNPKPLLLFEGLTIDKIFDIKDGKHIK-ILAKKDEMVYELLIFNSS---- 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + L S G + G L +++W G + + V D Sbjct: 518 SDGLKISEGDVVDAVGTLEISHWNGIESAIVNVKDIRV 555 >gi|168186871|ref|ZP_02621506.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum C str. Eklund] gi|169295193|gb|EDS77326.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum C str. Eklund] Length = 588 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 167/601 (27%), Positives = 296/601 (49%), Gaps = 40/601 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + + + ++ I DI A++L NR + S + AK F+N S+ L P ++ Sbjct: 3 QWRLKVTKCDTKL---LAKQCNISDIAAKILANRKIQSEEEAKKFINASLDDLY-SPFLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + ++ AI +KI+++GDYD DG S +++ + L N YIPDR +GY Sbjct: 59 KDMQQGVDIVLDAIDEGKKIVVYGDYDADGVTSTSILYKGLLEIDANVEYYIPDREAEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190 G + + ++ ++GA++++T D G ++ + +++A G+ V+V DHH++ +E Sbjct: 119 GMSSNRLKILKDQGAEVLLTCDNGISAVEEVKFAKELGMQVVVTDHHELPFKEEDGERKY 178 Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A++NP R D LC AG+ F + +Y L D+ +++ Sbjct: 179 IIPEADAVINPKRNDCTYPFKMLCGAGIAFKFIQALYVSLGLDDSDA-----YKFIEIAG 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 + T+CDVV L+ NR L + + N GL+ L+ + I + N+G+MIGP I Sbjct: 234 IGTICDVVDLVSENRIIAKNALKMMKSTSNLGLQCLMNALGINKEEIKSYNIGFMIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L LLI++D + + LA L LN+ R+ M + +E+ V + Sbjct: 294 NATGRLDTAALSVELLITEDEERAKELANILYDLNKTRQEMTTRNVEEIIDVV--ENSSY 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +Q V+V+ + H I G++A +++E+F P+ ++ + GSGRSIE +++ Sbjct: 352 RQDKVLVIYKEDIHESIAGIVAGKIRERFNVPTIILT-KGKEMPKGSGRSIEEYNL--FE 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + ++ K GGH MAAGL+++ N +L + + P KID + Sbjct: 409 ELLKCKEVIEKFGGHPMAAGLSIKEENIEKLRTMLNENC--TLTDDDIIPKIKIDKRIPL 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 S+V LI+ LE+ P+G GNP P+FA N K+ +IR++ +++T + D+E + A Sbjct: 467 SSVREELIEELENLEPFGKGNPAPLFAEKNIKILNIRIMGKDQNTIKLTCLTNDNEKIDA 526 Query: 544 IAFRVYG-----------TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 I F + + + + +N + G + QLRV D Sbjct: 527 IIFNRADEFKDMVEKSLRENFETVIASPYNLNLDLIFYPMINEFNGYRNKQLRVKDFRVS 586 Query: 593 E 593 + Sbjct: 587 K 587 >gi|85712974|ref|ZP_01044013.1| RecJ [Idiomarina baltica OS145] gi|85693212|gb|EAQ31171.1| RecJ [Idiomarina baltica OS145] Length = 570 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 171/558 (30%), Positives = 273/558 (48%), Gaps = 19/558 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 P + ++L +R V+ L+ ++ M L D A +++A ++E I+I G Sbjct: 22 PATIRQILAHRGVTRPEQ---LDLRLQG-MAHFSQLRGIDAACEAMLEAREHNEAIVICG 77 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL+M L +P+R+ +GYG + +++E+ + LI+TVD Sbjct: 78 DFDADGATSTALLMSALPQLGFTKVTYRVPNRMTEGYGLSAAIVEQLAEQQVGLILTVDN 137 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G ++DA A GI +++ DHH + PA A+VNPN+ L GV F + Sbjct: 138 GIAAHDAAIRAAELGIKLVITDHHLAPASLPPAAAIVNPNQPGCEFPSKALAGVGVAFYL 197 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNP 277 L + LR+ +L LDLVAL TV DVVPL NR V +GL + Q Sbjct: 198 LAALRARLRETG--EQTPNLADFLDLVALGTVADVVPLDKNNRILVQQGLNRIKVGQCRA 255 Query: 278 GLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++ALIE+ + A +LG+ IGP INA GR+ + +LG L++ + + LA L Sbjct: 256 GIRALIEQSGRDIAKLQASDLGFAIGPRINAAGRLDDISLGIECLLASS-ERAQQLAQTL 314 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEKF 394 LN+ RR +E+ M +AE+ V D Q +VIV+ ++WH G++G++A R+KE+ Sbjct: 315 CDLNKQRREIEADMKAEAESIVSQLQLDNQGQLPNVIVLYNEQWHSGVIGIVAGRVKERT 374 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVN 452 RP + E D GS RSI+G I ++ ++ + GGHAMAAGL++ Sbjct: 375 HRPVIVFAKESDTHLKGSARSIDGVHIRDLLERVDTQYPDVIERFGGHAMAAGLSLAEAQ 434 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 + A + + + PV DG L+ + + I LE GP+G P P+F Sbjct: 435 LNTFQSAVSQAAADWLTDEVVQPVIWSDGQLSDEQLTVEFIQQLERFGPWGQKFPEPIFD 494 Query: 513 FPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 ++ R+V HL++ +S + AI+F + + + + Sbjct: 495 GE-FRILQQRIVGEKHLKLVVQSPEGGIFDAISFYCDIEQWP----NHQCQWVELVYKPQ 549 Query: 573 VNYWRGSKRCQLRVLDAS 590 +N++RG QL V Sbjct: 550 LNHFRGRTSVQLLVEQLR 567 >gi|161507672|ref|YP_001577626.1| single-stranded-DNA-specific exonuclease [Lactobacillus helveticus DPC 4571] gi|160348661|gb|ABX27335.1| Single-stranded-DNA-specific exonuclease [Lactobacillus helveticus DPC 4571] Length = 757 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 162/579 (27%), Positives = 276/579 (47%), Gaps = 34/579 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E A + +K+ + I AR+ R ++ D DF + + DP ++ Sbjct: 2 KWQQRTAEE---LAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 59 DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T + ++YA G+D I+ DHH + + AYA+V+ Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ-----------DPVPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLDVLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ V Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ ++G+ GSGRS GF++ ++ +E +L Sbjct: 346 PDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDALNPL-KESLLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L F+ H D L ++ + Sbjct: 405 KFGGHDFACGLSMEEDKVNDLRKKFEADFHVDGGLETKE----YDMELPMHDLSPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI-AFRVYGTP 552 + GP+G G+P P+F+ + + + H+++T +D AI F Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLTANKKDGNL--AIVGFN----- 513 Query: 553 LGEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590 ++L + + L +N +R Q + + Sbjct: 514 -KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGIA 551 >gi|17232619|ref|NP_489167.1| single-stranded-DNA-specific exonuclease [Nostoc sp. PCC 7120] gi|17134265|dbj|BAB76826.1| single-stranded-DNA-specific exonuclease [Nostoc sp. PCC 7120] Length = 716 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 171/618 (27%), Positives = 290/618 (46%), Gaps = 51/618 (8%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW L + A + + IV ++L+NR + + + A+ FL P L Sbjct: 16 LPNQRWHIHLQKTD--LAQKLADVTNLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSP 73 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D + + +AI KI I GDYD DG S AL++R L + IP R+ Sbjct: 74 LAEFPDLAMSVELLQEAIACQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRM 133 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++E+F NEG +LI+TVD G ++++ + A G++VI+ DHH + + PA Sbjct: 134 HEGYGINKRIVEEFHNEGVRLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPA 193 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP + + S + GV +++ V + + L + + + +L L L T+ Sbjct: 194 DAILNPKLIAESSPYRGVAGVGVAYILAVTLAQKLDKTKGL-----IQPMLALFTLGTIA 248 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---------------------- 289 D+ PL G+NR +V +GL + + PG++ALI+ + Sbjct: 249 DLAPLSGVNRRWVKRGLKLLPKSQLPGIQALIQVAGVQATGEGVGVQGSKGVGKDKLILP 308 Query: 290 --------SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 + E++G+ +GP INA GRIG+ LL +DD AM+ + N Sbjct: 309 VQSPATTPKTLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEGLALERAMQCEQANT 368 Query: 342 NRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400 +R+ M + +QA A V +QQ V+VV WH G++G++A+RL E++G P F Sbjct: 369 SRQQMCEEIEQQAIAHVEELYATSLQQDRVLVVIQPHWHHGVIGIVASRLVERYGVPVFI 428 Query: 401 ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460 ++E++ GS RSI F++ + + +L K GGH A G + N +L Sbjct: 429 GTYEDEELIRGSARSIPEFNVFTALEYCH--DLLGKYGGHKAAGGFSFPATNLPKLRSRL 486 Query: 461 QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS 520 ++FA+ + P+ +ID N + ++ L L S P G NP+PVF PN ++ Sbjct: 487 REFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDNPDPVFWTPNVQVVE 546 Query: 521 IRVVNLAHLQMTFE---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577 ++V H+++T + +AIA+R R+ + L N + Sbjct: 547 QQIVGKGHIKVTLSQTINGQQYQFKAIAWRWRDYY-------PLPSRLDIAYKLRENNFN 599 Query: 578 GSKRCQLRVLDASPVEGH 595 G+ +L +L + Sbjct: 600 GNTSLELELLGVRLAKKQ 617 >gi|314936251|ref|ZP_07843598.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus hominis subsp. hominis C80] gi|313654870|gb|EFS18615.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus hominis subsp. hominis C80] Length = 757 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 143/581 (24%), Positives = 284/581 (48%), Gaps = 30/581 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S ++W+ ++ I+ I ++ + IV ++L +++++ D +N + + D Sbjct: 4 SKYKWLYEAPKQNISS--EIIKEFNLSPIVRKILESKSITQYDEINTLINGTNKK--HDS 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +++D KA RI AI +E+I+++GDYD DG S ++++ L YIP+R Sbjct: 60 WLMSDMQKAVDRINLAIDKNERILVYGDYDADGVTSTTILVQTLRKLGAEVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G ++ ++ G+DVIV DHH++ AY Sbjct: 120 EGYGPNKYAFQNAYDEGVSLIITVDNGIQGHEEIEMVQVLGVDVIVTDHHEIGRTLPKAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P + +LC AGV + + + + + L + T+ D Sbjct: 180 AIIHPMHPEFEYPFKYLCGAGVAYKLSQCLIDHPPE-----------YFIVLATIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +GL + +++L+ + + I E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRTIVQEGLKYLNQSCPFQIQSLLNQAGFNDEIDEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+++DS+E LA +++ N R+ + + + E+A + ++ Sbjct: 289 DASLAAELLMAEDSEEANFLAEQVEAFNIERKDIVAQITEEALLMANEKV--ENGDKFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ + E GS RSIE + + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDLEQHHAKGSARSIEQVSM--FEILSAHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+E N L ++ + P I L+ + ++ Sbjct: 405 DLISKFGGHHMAAGMTMEIDNIDALSKGLNEWMVQLSKHTSLEPTKHITTKLSEDDITVS 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I ++ P+G P+F + ++ ++ + HL++ + L F Sbjct: 465 NIHDIKILKPFGTDFEKPLFELDDTEVNDVKAIGKDKNHLKLVTGQAKLQHL----FWKN 520 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + + + G+ +++ GHL +N W G++ Q+ + D + Sbjct: 521 GGLITQIEL---GQPVNIIGHLQINEWNGNQTPQMMIQDLA 558 >gi|50914099|ref|YP_060071.1| hypothetical protein M6_Spy0753 [Streptococcus pyogenes MGAS10394] gi|50903173|gb|AAT86888.1| RecJ [Streptococcus pyogenes MGAS10394] Length = 736 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A + L + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDELLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|325125975|gb|ADY85305.1| Single-stranded-DNA-specific exonuclease [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 758 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 160/574 (27%), Positives = 277/574 (48%), Gaps = 32/574 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W A + ++ + + A++ R + + D+ + + DP ++ Sbjct: 2 KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QA+ EKI I+GDYD DG + A+M L+ + + +IPDR DGYG Sbjct: 59 DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + + +G +LIITVD G+T + + YA + G+DVIV DHH K E+ AYALV+ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + L+L + T+ D+V + Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + PGL+ALI ++ I E++G+ I P +NA GR+ +++ Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L RLL+++ E + LA +++ LN R+ + A ++ AEA++ + Q+ + + + Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++GL+A ++ EK+ +P+ ++ E G GSGRS +GF++ + E + Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH A GL+ N +L F + V + DG ++ V++ + Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L AGP+G NP PVF ++ + R + +F ++A+ F L + Sbjct: 463 LAQAGPFGTDNPQPVFLLDRPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + L N ++G Q R++D Sbjct: 514 TVLPYLRQ---MLVKLASNTFKGKTNVQFRIVDL 544 >gi|193078656|gb|ABO13707.2| ssDNA exonuclease [Acinetobacter baumannii ATCC 17978] Length = 565 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 174/559 (31%), Positives = 262/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L D A + QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALMM L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + I A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN +RR +E M +QA + + + Q + +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + I DG L SA+ + ++ +E GP+G P P Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNTA----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564 >gi|313124008|ref|YP_004034267.1| exonuclease recj [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280571|gb|ADQ61290.1| Exonuclease RecJ [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 758 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 160/574 (27%), Positives = 276/574 (48%), Gaps = 32/574 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W A + ++ + + A++ R + + D+ + + DP ++ Sbjct: 2 KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QA+ EKI I+GDYD DG + A+M L+ + + +IPDR DGYG Sbjct: 59 DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + + +G +LIITVD G T + + YA + G+DVIV DHH K E+ AYALV+ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + L+L + T+ D+V + Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + PGL+ALI ++ I E++G+ I P +NA GR+ +++ Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L RLL+++ E + LA +++ LN R+ + A ++ AEA++ + Q+ + + + Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++GL+A ++ EK+ +P+ ++ E G GSGRS +GF++ + E + Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH A GL+ N +L F + V + DG ++ V++ + Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L AGP+G NP PVF ++ + R + +F ++A+ F L + Sbjct: 463 LAQAGPFGTDNPQPVFLLDKPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + L N ++G Q R++D Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544 >gi|21910175|ref|NP_664443.1| putative single-strand DNA-specific exonuclease [Streptococcus pyogenes MGAS315] gi|28896125|ref|NP_802475.1| single strand DNA-specific exonuclease [Streptococcus pyogenes SSI-1] gi|21904368|gb|AAM79246.1| putative single-strand DNA-specific exonuclease [Streptococcus pyogenes MGAS315] gi|28811375|dbj|BAC64308.1| putative single strand DNA-specific exonuclease [Streptococcus pyogenes SSI-1] Length = 736 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 273/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDVAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + ++ R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|210616296|ref|ZP_03291024.1| hypothetical protein CLONEX_03245 [Clostridium nexile DSM 1787] gi|210149851|gb|EEA80860.1| hypothetical protein CLONEX_03245 [Clostridium nexile DSM 1787] Length = 586 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 299/584 (51%), Gaps = 39/584 (6%) Query: 30 ALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 I +K I I+AR++ NR+ + + + +LN +I L D +++ D DKA +++ Sbjct: 13 FQEIAEKFQIHPILARLIRNRDVIGDEAIQLYLNGTIADLY-DGMLMKDMDKAVDILLEK 71 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I +KI I GDYD+DG S +++ + + A++ IPDR+ DGYG N +L+++ ++ Sbjct: 72 IREDKKIRIIGDYDIDGINSTYILLEGIKYLGGEADIDIPDRMKDGYGLNRNLIDRAFDD 131 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE---------IPAYALVNPNR 199 IIT D G + + + Y + G+ +IV DHH++ EE PA A+++P + Sbjct: 132 DIDTIITCDNGIAAREEIAYGKSLGMTIIVTDHHEIPYEEVESEKRYILPPADAVIDPKQ 191 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 LC AGV + ++ ++ +D D+ L++ VA+ATV DV+ L+G Sbjct: 192 QTCAYPFKELCGAGVAYKLIEALFGACGKD-----IEDVDYLMENVAIATVGDVMDLVGE 246 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGS 318 NR +V +GL + +R N GL+AL+E + ++A ++G++IGP +NA GR+ + Sbjct: 247 NRIFVKQGLEMLKRTNNLGLRALMECTGVPVERLSAYHIGFVIGPCLNASGRLDTAKRAL 306 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 LL + +E ++LA L LN NR+ M ++ +E+A +V + + + V+V+ Sbjct: 307 ELLCAKTKKEADILAGDLKALNDNRKDMTASAVEEAVKQV--EETRLGEDKVLVIYLPDC 364 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H + G++A R++E++ +P F ++ E+G GSGRSIE + + + ++ + +L K G Sbjct: 365 HESLAGIVAGRVRERYHKPVFILTKAEEGV-KGSGRSIESYHMYEELNKC--KSLLTKFG 421 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH +AAGL++E N RL + + + P ID + +N A +D LE Sbjct: 422 GHKLAAGLSLEEENVDRLRETLNDL--STLTQEDLIPKISIDMQMPLGYINEAFVDELEL 479 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G GN PVF N ++ S R++ L+M + + A+ F L F Sbjct: 480 LEPFGKGNIKPVFVEKNIEILSARILGKNKNVLKMQVQDAPGTQMDAMYFGDVEAFLEFF 539 Query: 557 LMQSRGKRMH-------------VTGHLCVNYWRGSKRCQLRVL 587 + + T + +N + G K Q+ + Sbjct: 540 REKYGKPAVDGLLRGQRSKVEAAFTYYPGINEYMGQKTVQIIIQ 583 >gi|116514284|ref|YP_813190.1| single-stranded DNA-specific exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093599|gb|ABJ58752.1| exonuclease RecJ [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 758 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 160/574 (27%), Positives = 277/574 (48%), Gaps = 32/574 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W A + ++ + + A++ R + + D+ + + DP ++ Sbjct: 2 KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QA+ EKI I+GDYD DG + A+M L+ + + +IPDR DGYG Sbjct: 59 DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + + +G +LIITVD G+T + + YA + G+DVIV DHH K E+ AYALV+ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + L+L + T+ D+V + Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + PGL+ALI ++ I E++G+ I P +NA GR+ +++ Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L RLL+++ E + LA +++ LN R+ + A ++ AEA++ + Q+ + + + Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++GL+A ++ EK+ +P+ ++ E G GSGRS +GF++ + E + Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH A GL+ N +L F + V + DG ++ V++ + Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L AGP+G NP PVF ++ + R + +F ++A+ F L + Sbjct: 463 LAQAGPFGTDNPQPVFLLDRPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + L N ++G Q R++D Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544 >gi|20807647|ref|NP_622818.1| single-stranded DNA-specific exonuclease [Thermoanaerobacter tengcongensis MB4] gi|20516192|gb|AAM24422.1| Single-stranded DNA-specific exonuclease [Thermoanaerobacter tengcongensis MB4] Length = 820 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 185/578 (32%), Positives = 296/578 (51%), Gaps = 29/578 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RWV + + + + K+ + IVA++L +R V ++FL PS+ L+ P L Sbjct: 5 YRWVVR--ERDLKKIEELKVKYHLDGIVAQILSSRGVKG--VEEFLMPSLDRLI-SPFEL 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I + I I I+GDYDVDG S +L+ L + YIP+R+ +GY Sbjct: 60 KGVKEAKELIEKHIKEGSLITIYGDYDVDGITSTSLLYLALKKLGAKVDYYIPERLSEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +EK EGA+L+ITVDCG T+ ++ A G+DVI+ DHH + E A ++ Sbjct: 120 GINEEALEKIAYEGAKLVITVDCGITALKEVEKAKKMGLDVIITDHHSIPEEIPKADVVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ L GV F + + LDLVAL TV D+VP Sbjct: 180 NPHLPG-AYPFSELAGVGVAFKLAQALI-----------GEQAFEFLDLVALGTVADIVP 227 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGES 314 LIG NR V +GL GN GLKALIE +S + ++G++I P +NA GR+ + Sbjct: 228 LIGENRVIVKEGLKRLNNTGNLGLKALIEIAGVSGRELDEYHIGFIIAPRLNAAGRLKSA 287 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLI+ D +E + +A L+ N R+ ME+ +L++A K+ + ++ VIV+ Sbjct: 288 EAAVRLLITSDEKEAQDIAKYLNEENLRRQNMENTILKEAIEKIEKEG--LKDDKVIVLW 345 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WHPG++G++++++ E +GRPS I + +G GSGRS+EGF+I K +++ + +L Sbjct: 346 QEGWHPGVIGIVSSKITEMYGRPSILIGLIGE-EGKGSGRSVEGFNIYKALNYC--KDLL 402 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 VK GGH MA GLT+++ N D ++A V + P KID V+ ++ + Sbjct: 403 VKYGGHEMAGGLTIQKENLKLFKDKINEYADRFVKEIDLVPALKIDAVVKKDKADLGIAK 462 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 ++ P+G GNP P+ F + I + + H++ +D + + F Sbjct: 463 KIQQLKPFGVGNPKPLLLFEGLTIDKIFDIKDGKHIK-ILAKKDEMVYELLIFNSS---- 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + L S G + G L +++W G + + V D Sbjct: 518 SDGLKISEGDVVDAVGTLEISHWNGIESAIVNVKDIRV 555 >gi|104774194|ref|YP_619174.1| RecJ, single-stranded DNA specific exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423275|emb|CAI98110.1| RecJ, single-stranded DNA specific exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 758 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 160/574 (27%), Positives = 277/574 (48%), Gaps = 32/574 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W A + ++ + + A++ R + + D+ + + DP ++ Sbjct: 2 KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QA+ EKI I+GDYD DG + A+M L+ + + +IPDR DGYG Sbjct: 59 DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + + +G +LIITVD G+T + + YA + G+DVIV DHH K E+ AYALV+ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + L+L + T+ D+V + Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + PGL+ALI ++ I E++G+ I P +NA GR+ +++ Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L RLL+++ E + LA +++ LN R+ + A ++ AEA++ + Q+ + + + Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KRRGYQKEATLTLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++GL+A ++ EK+ +P+ ++ E G GSGRS +GF++ + E + Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH A GL+ N +L F + V + DG ++ V++ + Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L AGP+G NP PVF ++ + R + +F ++A+ F L + Sbjct: 463 LAQAGPFGTDNPQPVFLLDRPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + L N ++G Q R++D Sbjct: 514 TVLPYLRQ---MLVKLASNTFKGKTNVQFRIVDL 544 >gi|74317789|ref|YP_315529.1| exonuclease RecJ [Thiobacillus denitrificans ATCC 25259] gi|74057284|gb|AAZ97724.1| RecJ exonuclease [Thiobacillus denitrificans ATCC 25259] Length = 565 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 179/573 (31%), Positives = 269/573 (46%), Gaps = 26/573 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A ++ + AR+ R VS D + L+P P + + D+AAR + Sbjct: 10 PTEVCAALEQAGLAPAWARLYAARGVSHPDQIAH----RLPQLLP-PTAMLNSDRAARLL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 AI +K++I GDYD DGA + AL +R L + +P+R+ GYG P ++ Sbjct: 65 ADAIEAHKKLLIVGDYDADGATACALGVRGLRMLGARVDYLVPNRLEHGYGLTPDIVRIA 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVD G + + + A GI V+V DHH A +VNPN+ Sbjct: 125 AARQPDLLITVDNGIAAVEGVAAANALGIPVLVTDHHLPGDALPDAACIVNPNQPHCAFP 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAY 263 +L GV+F VL+ + LR+ DL LLDLVAL TV DVV L NR Sbjct: 185 SKNLAGVGVMFYVLLALRAELRRRGAYEQVAEPDLRVLLDLVALGTVADVVRLDANNRTL 244 Query: 264 VVKGLMVARRQ-GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R PG+ AL + T +LG+M+GP +NA GRI + LG L Sbjct: 245 VAQGLARMRAGLACPGIAALFQAAGREPARATVFDLGFMLGPRLNAAGRIDDMALGIECL 304 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 ++D + LA +LD LN+ RR +E+ ML++A A + + + WH G Sbjct: 305 LADSPSAAQQLAQRLDALNRARRDVEADMLDEALAILAR--FSPSDSYSLTAYQPDWHIG 362 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439 ++G+LA+RLK+KF RP+ ++ E G+ GSGRSI G + + G+++K GG Sbjct: 363 VIGILASRLKDKFHRPTVVLAASESGELKGSGRSIPGLHLRDALDLVDKRHPGLILKFGG 422 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGL++ F+ ++ V + DG L + L LE Sbjct: 423 HAMAAGLSIAAGRQEEFAHAFEAVVRGLIDPADLEGVIETDGELELAEHRYELALELEH- 481 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +G G P P+F + + RVV HL++T ++D +A+ F F Sbjct: 482 AVWGQGFPAPLF-TGVFDVAAQRVVGDKHLKLTL-ARDGNAFEAMRF---------FQSD 530 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +R+H L N + G + QL++ P Sbjct: 531 PLPERIHAVYALMPNEFNGRRTLQLKLQHWEPA 563 >gi|158320745|ref|YP_001513252.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus oremlandii OhILAs] gi|158140944|gb|ABW19256.1| single-stranded-DNA-specific exonuclease RecJ [Alkaliphilus oremlandii OhILAs] Length = 587 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 178/602 (29%), Positives = 299/602 (49%), Gaps = 43/602 (7%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 +W + R +++K I ++ ++LVNR+++ + F++ ++ L DP Sbjct: 2 KKWFVKNKKFDYGR---MSEKFNISPLICKLLVNRSITEERLISSFIDSNLDHLH-DPKK 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KAA + I ++I I GDYDVDG S ++ LS C + + IPDRI DG Sbjct: 58 MKDVVKAASILKSKIETHKRIRIIGDYDVDGVISTYILFMALSKCGADVDYDIPDRIKDG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI----- 189 YG N S++E+ +EG IIT D G ++ + +QYA + G+ VIV DHH + E Sbjct: 118 YGINRSIIERSKSEGIDTIITCDNGISAIEPIQYAKDLGLTVIVTDHHDIPFIEDEESKR 177 Query: 190 -----PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A A++NP + + LC AGV F ++ ++Y ++ + L++ Sbjct: 178 TFISSCADAIINPKQEECDYEFKSLCGAGVAFKLIQVLYEKMKI-----PMEESFRLIEF 232 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGP 303 VA+ATVCDVV LI NR +V +GL + N GL AL++ I S I+ +LG++IGP Sbjct: 233 VAIATVCDVVDLIDENRIFVKQGLEAIKTTNNLGLMALMKESGIESKSISVYHLGFIIGP 292 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+ + G RLLI++D +E++ LA +L LNQ+R+ M +E+A + + Sbjct: 293 CINASGRLDNAKKGLRLLIAEDREEVDSLAKELYELNQDRKDMTIKGVEKAIEII--EGT 350 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 DI+ V V+ H + G++A R+KE++ P+ ++ E+G GSGRSI+ +++ Sbjct: 351 DIKNHKVFVIYMPEVHESLAGIIAGRIKEQYHVPTIVLTKSEEGV-KGSGRSIDCYNM-- 407 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + +L K GGH MAAGL+++ L + + + P +D L Sbjct: 408 FEELLKCKDLLRKFGGHPMAAGLSLDEDQVENLREKLNQVTD--LTEEDLIPTINLDMGL 465 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETL 541 ++ LI+ +E P+G GN P+F N ++ ++ L++ S+ + + Sbjct: 466 EIDRIDYELIEDIERLSPFGKGNNKPLFGDKNIRVIKGHILGQNRNVLKLKLLSKQGKYM 525 Query: 542 QAIAFR-----------VYGTPLGEFLMQSRGKR--MHVTGHLCVNYWRGSKRCQLRVLD 588 I F +G+ E L Q + + + +N + QL + D Sbjct: 526 DGIYFGDIKAFEELITTRFGSDELERLYQGSNTNIVIDIAFYPTINTYMERSNIQLTIED 585 Query: 589 AS 590 Sbjct: 586 FR 587 >gi|326390126|ref|ZP_08211687.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter ethanolicus JW 200] gi|325993774|gb|EGD52205.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter ethanolicus JW 200] Length = 815 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 177/576 (30%), Positives = 294/576 (51%), Gaps = 23/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + I +++ + I+A +L + ++ K+FLNP ++ L P +L Sbjct: 9 YRWILKE-NPNLQLTQEIQREYGLHKIIADILSS-KLNAQEVKNFLNPDLKDLY-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + I I+GDYDVDG + +++ L + YIP+R+V+GY Sbjct: 66 RGIKEAKELIQQHIALKDLITIYGDYDVDGITATSVLYLTLKKLGAKVDYYIPERLVEGY 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LII+VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAQFLGIDVIITDHHSIPKEIPQADVVI 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ D L GV F + + + LLD+V++ T+ D+VP Sbjct: 186 NPHLPDIEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKALI+ + I ++G+++ P +NA GR+ + Sbjct: 235 LLGENRIIVKEGLKRLNETRNIGLKALIKASGLQNIEIDEYHVGFILAPRLNAAGRLRSA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS D +E++ +A L+ N NR+ +E+ +L++A K+ + D+ + VIV+ Sbjct: 295 EAAVRLLISQDEKEVKEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ K + + + L Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P +ID + ++I + Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYAATVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + + +N + +D + + F V Sbjct: 471 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIAQKDKFGYELMLFDVSDQGND 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + V G + +N W G + + V D Sbjct: 531 ----VKIGDIIDVVGSIEINSWNGIESVMINVKDLR 562 >gi|90416816|ref|ZP_01224746.1| RecJ exonuclease [marine gamma proteobacterium HTCC2207] gi|90331569|gb|EAS46805.1| RecJ exonuclease [marine gamma proteobacterium HTCC2207] Length = 583 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 178/587 (30%), Positives = 282/587 (48%), Gaps = 29/587 (4%) Query: 26 GINRALAITQKHA--IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 A+ ++ R+ + R V+ A L + L P P + D A Sbjct: 4 EARTFDALDGDFDPQFDPLLKRIYLARGVTQQAA---LQRQLSCL-PSPSSMLGIDTAVA 59 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLM 142 + A+ ++++I GD+D DGA S ALM+ L+ + +P+R GYG P ++ Sbjct: 60 ILAAALVEQKRVLIVGDFDADGATSSALMVLALTAMGYQHVDFLVPNRFDYGYGLTPEIV 119 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + QL+ITVD G +S D ++ A G+ VIV DHH + A A+VNPN+ Sbjct: 120 DLAAEREPQLLITVDNGISSIDGVKKANALGMQVIVTDHHLPGAVLPDAAAIVNPNQPGC 179 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIG 258 +L GV F +L + LR+DN N ++ + LDLVAL TV DVVPL Sbjct: 180 TFVTKNLAGVGVAFYLLSALRGQLRRDNWFDENTIAEPNMATWLDLVALGTVADVVPLDQ 239 Query: 259 LNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 +NRA V +GLM R Q PG+KAL+ + + A +LG+ +GP +NA GR+ + +L Sbjct: 240 INRALVHQGLMRIRAGQCRPGIKALLTIAGKNPQRLVATDLGFALGPRLNAAGRLDDISL 299 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVE 374 G + L++ D Q A +LD LNQ+R+++E M +A V ++ + + Sbjct: 300 GIQCLLTSDPQLAMDTARELDELNQDRKVIEQDMQREALKIVEQIPLSLEGEVPPALCLF 359 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432 WH G+VGLLA+R+KEK+ RP A + ++G+ GS RSI G I + G Sbjct: 360 QAEWHQGVVGLLASRIKEKYHRPVIAFARGDNGQLKGSSRSIPGLHIRDALDAVASQNPG 419 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGL+++ + FQ+ ++ A DG L +++ Sbjct: 420 LISKFGGHAMAAGLSLDEDKLPAFKEAFQRQVAQLLSADDLQAKIATDGELIQQQLSMQT 479 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF--ESQDSET-----LQAIA 545 ++L +GP+G P P F ++ R+V HL++ S+ + + I Sbjct: 480 AELLRDSGPWGQLFPEPCFEGE-FEVLQQRIVGEKHLKLVLAPVSETGQKQPYAGIDGIW 538 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F E S + + L +N +RG + QL + P+ Sbjct: 539 FNADT----EVWPSSHHRLVRCVYRLDINEYRGQQSLQLMIQFLEPL 581 >gi|325123848|gb|ADY83371.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter calcoaceticus PHEA-2] Length = 566 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 172/559 (30%), Positives = 261/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L + A I QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAP-QLKGLETAVALIDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ V++ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVVITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + NK + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNKQNKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ S + A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RAGILALLDIAGREASSLRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMESAYPIAR 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E M +QA + + + Q +++ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDVPPALILFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + + DG L ASA+ + +D +E GP+G P P Sbjct: 433 ENFEAF-KTVFVGCIATMDESLFQATLWTDGELPASALQLDTLDWIEQLGPWGQKFPFPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEG-HFKVVDYRWLKETHLKLKLAL-DQYSFDAIAFNAV----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNAFNGNVNLQLRIVHL 564 >gi|300812583|ref|ZP_07093000.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496456|gb|EFK31561.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 758 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 160/574 (27%), Positives = 276/574 (48%), Gaps = 32/574 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W A + ++ + + A++ R + + D+ + + DP ++ Sbjct: 2 KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QA+ EKI I+GDYD DG + A+M L+ + + +IPDR DGYG Sbjct: 59 DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEILTIMGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + + +G +LIITVD G T + + YA + G+DVIV DHH K E+ AYALV+ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + L+L + T+ D+V + Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + PGL+ALI ++ I E++G+ I P +NA GR+ +++ Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L RLL+++ E + LA +++ LN R+ + A ++ AEA++ + Q+ + + + Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++GL+A ++ EK+ +P+ ++ E G GSGRS +GF++ + E + Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH A GL+ N +L F + V + DG ++ V++ + Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L AGP+G NP PVF ++ + R + +F ++A+ F L + Sbjct: 463 LAQAGPFGTDNPQPVFLLDKPQISNFRPMRKG---CSFMVG---PVRAVDF---DHGLNQ 513 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + L N ++G Q R++D Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544 >gi|325685997|gb|EGD28058.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 758 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 159/574 (27%), Positives = 275/574 (47%), Gaps = 32/574 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W A + ++ + + A++ R + + D+ + + DP ++ Sbjct: 2 KWQERTAAP---LASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QA+ EKI I+GDYD DG + A+M L+ + + +IPDR DGYG Sbjct: 59 DMDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + + +G +LIITVD G T + + YA + G+DVIV DHH K E+ AYALV+ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGVTGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + L+L + + D+V + Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE-----------DTASEFLELAMIGIIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + PGL+ALI ++ I E++G+ I P +NA GR+ +++ Sbjct: 228 SGEGHVIVKRGLEMLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L RLL+++ E + LA +++ LN R+ + A ++ AEA++ + Q+ + + + Sbjct: 288 LAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQI--KSRGYQKEATLTLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++GL+A ++ EK+ +P+ ++ E G GSGRS +GF++ + E + Sbjct: 346 PAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-FEGKSIT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH A GL+ N +L F + V + DG ++ V++ + Sbjct: 405 QFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLDVDLTSVYD 462 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L AGP+G NP PVF ++ + R + +F ++A+ F L + Sbjct: 463 LAQAGPFGTDNPQPVFLLDKPQISNFRPMRKG---CSFMVG---PVRAVDF---DHSLNQ 513 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + L N ++G Q R++D Sbjct: 514 TVLPYLQQ---MLVKLASNTFKGKTNVQFRIVDL 544 >gi|242373936|ref|ZP_04819510.1| recombination protein RecJ [Staphylococcus epidermidis M23864:W1] gi|242348290|gb|EES39892.1| recombination protein RecJ [Staphylococcus epidermidis M23864:W1] Length = 762 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 159/579 (27%), Positives = 284/579 (49%), Gaps = 30/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 + W E I + ++ + IV +VL ++N+ + +D L I DP Sbjct: 11 YNWDLAEPTEYI--TEELAKELKLSPIVKKVLESKNLVQEEMIQDVLQDKIIN--HDPWA 66 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L+D KA RI AI SE+I+++GDYD DG S +++ LS YIP+R +G Sbjct: 67 LSDMQKAVDRINLAIDKSERILVYGDYDADGVTSTTILVNTLSQLGAQVGWYIPNRFSEG 126 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + EG LIITVD G ++ ++ + G+DVIV DHH++ AYA+ Sbjct: 127 YGPNALAFQNAYEEGTSLIITVDNGIQGHEEIKMVQDLGVDVIVTDHHEIGRTLPEAYAI 186 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P + +LC AGV + + + Q L L A+ T+ D+V Sbjct: 187 VHPMHPEFSYPFQYLCGAGVAYKLAQALISHPPQ-----------QFLALAAIGTIADLV 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L NR+ V +GL + ++A++++ + I E +G++IGP +NA GR+ ++ Sbjct: 236 SLTDENRSIVKQGLNILNNNAPVSIQAILKQAGYNDNINEETIGFIIGPRLNAVGRLEDA 295 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +L + LL+S++ +E E LA +++ NQ R+ + S + E+A A Q Q +++ Sbjct: 296 SLAAELLMSEEIEEAEFLAEQVEHFNQERKDIVSEITEEALALAEEQV--QQGHLFLLLA 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+++ E + P+ ++ + E GS RSI+ + + + Sbjct: 354 KENWHEGVLGIVASKVVETYALPTLILNIDLEQNHAKGSARSIDQVSM--FEILNAHQDL 411 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH MAAG+T++ N L + + P +D +L+ +++ I Sbjct: 412 ISKFGGHHMAAGMTMDIENIDELRKGLNDWMRQLAETTSLEPRKHVDVLLDEREISVKNI 471 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 ++ P+G +P F + +QSI+ + HL+++ + A+ + Sbjct: 472 RDIQRLRPFGTDFNSPTFELKDLNVQSIKAIGQDGKHLKLSL---GENQIAALYW--SNG 526 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L L G+ +++ G L +N W G++ QL + D + Sbjct: 527 HLANELEI--GQPVNLIGQLQINEWNGNQSPQLIIQDIA 563 >gi|260101351|ref|ZP_05751588.1| recombination protein J [Lactobacillus helveticus DSM 20075] gi|260084859|gb|EEW68979.1| recombination protein J [Lactobacillus helveticus DSM 20075] Length = 757 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 161/579 (27%), Positives = 277/579 (47%), Gaps = 34/579 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E A + +K+ + I AR+ R ++ D DF + + DP ++ Sbjct: 2 KWQQRTAEE---LAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 59 DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T + ++YA G+D I+ DHH + + AYA+V+ Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ-----------DPVPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLDVLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ V Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ ++G+ GSGRS+ GF++ ++ +E +L Sbjct: 346 PDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSLSGFNLFDALNPL-KESLLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L + F+ H D L ++ + Sbjct: 405 KFGGHDFACGLSMEEDKVNDLREKFEADFHVDGGLETKE----YDMELPMHDLSPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI-AFRVYGTP 552 + GP+G G+P P+F+ + + + H+++ +D AI F Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLIANKKDGNL--AIVGFN----- 513 Query: 553 LGEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590 ++L + + L +N +R Q + + Sbjct: 514 -KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGIA 551 >gi|169634753|ref|YP_001708489.1| ssDNA exonuclease, 5'--> 3' specific, Mg dependent [Acinetobacter baumannii SDF] gi|184159832|ref|YP_001848171.1| single-stranded DNA-specific exonuclease [Acinetobacter baumannii ACICU] gi|239503843|ref|ZP_04663153.1| single-stranded DNA-specific exonuclease [Acinetobacter baumannii AB900] gi|169153545|emb|CAP02713.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter baumannii] gi|183211426|gb|ACC58824.1| Single-stranded DNA-specific exonuclease [Acinetobacter baumannii ACICU] gi|322509744|gb|ADX05198.1| SsDNA exonuclease [Acinetobacter baumannii 1656-2] Length = 566 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 174/559 (31%), Positives = 261/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L D A + QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALMM L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + I A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN +RR +E M +QA + + + Q + +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + I DG L SA+ + ++ +E GP+G P P Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEGY-FKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564 >gi|320115852|ref|YP_004186011.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319928943|gb|ADV79628.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 815 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 177/576 (30%), Positives = 295/576 (51%), Gaps = 23/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + + + + +P I+A +L R +++ K FLNP ++ L P +L Sbjct: 9 YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + + I I+GDYDVDG + +++ L + YIP+R+V+GY Sbjct: 66 RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LII+VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 126 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ D L GV F + + + LLD+V++ T+ D+VP Sbjct: 186 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKA+I+ + I ++G+++ P +NA GR+ + Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLRSA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS D +E+E +A L+ N NR+ +E+ +L++A K+ + D+ + VIV+ Sbjct: 295 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ K + + + L Sbjct: 354 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 410 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P +ID + ++I + Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 470 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + + +N + +D + + F Sbjct: 471 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + V G + +N W G + + V D Sbjct: 531 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 562 >gi|167037439|ref|YP_001665017.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856273|gb|ABY94681.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 811 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 177/576 (30%), Positives = 295/576 (51%), Gaps = 23/576 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + + + + +P I+A +L R +++ K FLNP ++ L P +L Sbjct: 5 YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 61 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + + I I+GDYDVDG + +++ L + YIP+R+V+GY Sbjct: 62 RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLGAKVDYYIPERLVEGY 121 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LII+VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 122 GINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVI 181 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ D L GV F + + + LLD+V++ T+ D+VP Sbjct: 182 NPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLDIVSIGTIADIVP 230 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKA+I+ + I ++G+++ P +NA GR+ + Sbjct: 231 LLGENRIIVKEGLKRLNETQNIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLRSA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS D +E+E +A L+ N NR+ +E+ +L++A K+ + D+ + VIV+ Sbjct: 291 EAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KETVDLNKEKVIVLW 349 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ K + + + L Sbjct: 350 DKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC--KDYL 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P +ID + ++I + Sbjct: 407 IKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAK 466 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + + +N + +D + + F Sbjct: 467 QVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYELMLFDASEKGND 526 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + V G + +N W G + + V D Sbjct: 527 ----VKIGDVIDVVGSIEINSWNGIELVVINVKDLR 558 >gi|332872828|ref|ZP_08440793.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii 6014059] gi|323519759|gb|ADX94140.1| single-stranded DNA-specific exonuclease [Acinetobacter baumannii TCDC-AB0715] gi|332738989|gb|EGJ69851.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter baumannii 6014059] Length = 566 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 174/559 (31%), Positives = 261/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L D A + QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLDAAVALMDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALMM L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHHTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + I A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN +RR +E M +QA + + + Q + +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + I DG L SA+ + ++ +E GP+G P P Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIERLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEGY-FKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNVFNGNVSLQLRIVHL 564 >gi|19745988|ref|NP_607124.1| single-strand DNA-specific exonuclease [Streptococcus pyogenes MGAS8232] gi|19748150|gb|AAL97623.1| putative single-strand DNA-specific exonuclease [Streptococcus pyogenes MGAS8232] Length = 736 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 272/583 (46%), Gaps = 32/583 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYERGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D K+ RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKSVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL + + GL+ L+ I E+ +G+ I P +NA GR Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLSPIDLEYFNEDAIGFQIAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D QE + +A+ + N+ R+ + + +QA A V Q V Sbjct: 291 LDDPNPAIELLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + Sbjct: 345 QVLAQAGWHPGVLGIVAGRIMETIGQTVVVLT-IDNGFAKGSARSLEAINI--FEALNGK 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA AAG+T+ N L DF +F ID L+ +++ Sbjct: 402 RELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSL 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L+ PYG + PVF + + R + HL+ SQ + +AF Sbjct: 462 DILKSLDKLAPYGMDHQKPVFYVKDIWVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G+ L EF + + + L VN+W G+ Q ++DA Sbjct: 521 -GSQLQEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 559 >gi|291520599|emb|CBK75820.1| single-stranded-DNA-specific exonuclease RecJ [Butyrivibrio fibrisolvens 16/4] Length = 588 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 161/602 (26%), Positives = 282/602 (46%), Gaps = 44/602 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 +W+ ++ K + ++ R++VNR +S + +++L+P++ PDP + Sbjct: 3 KWILQRKAADYA---GLSAKLNVDPVLVRLMVNRGLSTYEEMEEYLHPTLNNF-PDPHLF 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A +++AI + +I + GDYDVDG S ++ + + + +P R+VDGY Sbjct: 59 ADMDLACELLMEAIDDGVRIRVVGDYDVDGIMSTYILTSAIREAGGDVDYAVPHRMVDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G NP +++ ++G IIT D G + A+ A G+ +V DHH+V Sbjct: 119 GINPDMVQAACDDGVGFIITCDNGIAAAPAIDLAKELGMTFVVTDHHEVPFELSEDGETK 178 Query: 186 -SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 + A A+V+P R D +C A V + + +++ L + + L Sbjct: 179 IQKLPAADAVVDPKRDDCNYPFKGICGAQVAWKLAEVLFEFLGLEKEES-----DKFLQF 233 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303 A+ATVCDV+ L G NRA V +G+ N G+ AL+ R + P++ +LG++IGP Sbjct: 234 AAIATVCDVMELKGENRATVYQGIRAIEATENVGISALLARNELKGKPLSCYHLGFIIGP 293 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+ + LL+ D + +A +L LN R+ M +++A + + Sbjct: 294 CLNASGRLDTAGRAIELLMEPDQAKALAMANELVELNSQRKNMTQIGIDKARDMI--ENS 351 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 D++ +V+VV H + G++A R++E + +P I+ EDG GSGRSI +++ Sbjct: 352 DLKNDNVLVVYIPELHESLAGIVAGRIREAYNKPVLVITDAEDG-AKGSGRSIPAYNM-- 408 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + + K GGH MAAG+++ L + + V KID + Sbjct: 409 FEELTAVKDVFTKFGGHPMAAGVSLPTEKIDELRTRLNERC--TLTEDDMQEVIKIDCDM 466 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETL 541 S + L+D L+ P+G GN P+FA N + + +L++T ++ E + Sbjct: 467 PLSYITEGLVDSLDMLAPFGTGNTKPLFALKNVPILKAAYIGKEGQYLRLTVGTEKGECM 526 Query: 542 QAIAFR-------------VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 A+ FR GT QS G M + +N +RG++ Q+ V + Sbjct: 527 TAMLFRNVPEFEDIVNTKYGPGTWDRVCSGQSSGVSMDIIYEPSINEFRGNRSIQIMVEN 586 Query: 589 AS 590 Sbjct: 587 FK 588 >gi|297621894|ref|YP_003710031.1| single-stranded-DNA-specific exonuclease RecJ [Waddlia chondrophila WSU 86-1044] gi|297377195|gb|ADI39025.1| single-stranded-DNA-specific exonuclease RecJ [Waddlia chondrophila WSU 86-1044] Length = 587 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 166/586 (28%), Positives = 268/586 (45%), Gaps = 20/586 (3%) Query: 18 WVSLLGQE-------GINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLM 69 W I ++ I + A++ V+R+ + D +L + L Sbjct: 4 WNFEPDNPMWVYPKMDKRWQDDIIKEFKIHPVTAQLFVSRDFTTVDQIHQYLYAKLPDLH 63 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 DP +L DKA RIV+AI N E I+I+GD DVDG AL+ +L N YI Sbjct: 64 -DPSLLQGMDKAVERIVKAIENEENILIYGDNDVDGMTGTALLTDYLRKVGANVYFYIST 122 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 +E +L+ITVDCG T+ + +GIDVI+ DHH+ + Sbjct: 123 PGTLRQNLIIEAIEFATKNQCKLLITVDCGVTAATEIAKVVEKGIDVIITDHHEPTDQIP 182 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALA 248 A +NP L++ L GV F ++ + L + K+ DL LDLVAL Sbjct: 183 HCIATLNPKLLNNSYPNRDLTGVGVTFKLVHALTNYLVKQGKIDSKKIDLKRYLDLVALG 242 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307 TV D+ L+G NR V GL +R GL LI ++ ++ + I P +N+ Sbjct: 243 TVADMGQLLGENRILVRYGLEQLKRTKRIGLAKLISVCDMEPKQVSTFTIASKIAPRLNS 302 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRI + G LL+ ++++ E +A +LD+ N R+ +E M + ++++ DI Q Sbjct: 303 LGRIADPVKGVELLLIRNAKQAETMAQELDLNNLERQRIEKTMTADVD-QIISLHPDILQ 361 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 +V+ D+WHPG++ +L R+ + + RP+ I+ E+G G GS RSI F + ++ Sbjct: 362 KKAVVIHSDKWHPGVIAILCTRISKHYNRPTVMIA-IENGIGKGSLRSIHEFPLLSVLRD 420 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 +LV GGH AAGLT++ N F + A+ + +D + S Sbjct: 421 C--SDLLVNYGGHDYAAGLTIKEENIPEFKRRFIEAANRKLSTHDVVTKLNLDSEVQFSD 478 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 + L++ ++ P+G NP P+ + ++V HL++ E D L+ IA Sbjct: 479 LTFDLMESVKLLEPFGNENPQPLMYTRAKQAWPPKIVGKTHLKLYLEQGD-RMLEGIA-- 535 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 YG L++ + + V VN + G QL + D +E Sbjct: 536 -YGKAHLSPLLRKKNIILEVAFTPQVNNFLG-PSIQLLIRDFRIIE 579 >gi|330718652|ref|ZP_08313252.1| single-stranded DNA-specific exonuclease [Leuconostoc fallax KCTC 3537] Length = 658 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 165/582 (28%), Positives = 289/582 (49%), Gaps = 22/582 (3%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 + W L + + + I + A ++ + + + A +L+PSI L DP Sbjct: 2 TQNNWKILP-KPNPKVVDELASRLDISRLTATIVAQKGYTDAESAYQYLSPSIEQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L D DKA R+ A + EKI+I+GDYD+DG S A+M L+ + + YIP+R Sbjct: 60 MLLHDMDKAVERLQDAAFGGEKIVIYGDYDLDGLTSTAVMYEALAILGADVSYYIPNRFN 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ +K I +GAQLI+TVD G T YDA+ A G+DVI+ DHH++ AY Sbjct: 120 DGYGPNKAVYQKLIQDGAQLIVTVDNGVTGYDAVNCAKALGVDVIITDHHELAPTLPEAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + L GV F V + + +LDLVA+ + D Sbjct: 180 AIVHPRHPEGHYPFNDLSGVGVAFKVAQALLSDGEAITDISQLPT--EMLDLVAMGEIAD 237 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310 +V L NR V GL PG++ L++ + P+ +E + + I P +NA GR Sbjct: 238 MVSLTDENRVLVSLGLKQMNDSPRPGIQYLLKNAGQAKNQPVISETVSFKIAPRLNAVGR 297 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G+++LG LL+S D E + LA +++ +N+ R+ + + +A++ Q + Sbjct: 298 MGDASLGLDLLLSQDLDESKALAKEVEAINKQRQEVVEKVFSEAKSLA--LSPQYQNDKI 355 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +++ G+ WH GI+G++A+R+ E +P+ +S ++D GSGRS FD+ + ++ Sbjct: 356 LLLSGENWHEGILGIVASRIVELTKKPTIILSQKDD-ILKGSGRSYGAFDLYQFMAL--F 412 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 GGHA A GL++ + L + + + T +++ +L + +N Sbjct: 413 RDTYTTFGGHASAIGLSLSVTSLATLREKIK---AKNSTITLVTKPIEVNLLLPSDTINN 469 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 + + L P+G N PVF F K+ + + H++++ + S+ ++A+ F Sbjct: 470 STYESLTLLEPFGTDNQRPVFVFEEPKIMNATTMGNLKQHVKLSLANLQSD-VEAVGFNH 528 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + ++ + + NY+RG + QL +LD Sbjct: 529 PDW----VPVVTQSTNISFVATIGTNYFRGRQTLQLMMLDIK 566 >gi|315038562|ref|YP_004032130.1| single-stranded-DNA-specific exonuclease [Lactobacillus amylovorus GRL 1112] gi|312276695|gb|ADQ59335.1| single-stranded-DNA-specific exonuclease [Lactobacillus amylovorus GRL 1112] Length = 757 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 163/578 (28%), Positives = 272/578 (47%), Gaps = 32/578 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E + +K+ + I A++ R + D DF + + DP ++ Sbjct: 2 KWQQRTAEELDPS---LIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 59 DMDKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + +G +LIITVD G T D ++YA G+D IV DHH + ++ AYA+V+ Sbjct: 119 PNIDRYHDIVADGTKLIITVDNGVTGTDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHVIVKRGLEVLNQTERPGLRALIKNAGLTLGSINETDIGFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ A + Q+ + +V+ Sbjct: 288 LAVELLLSDDDVEAQKIADQIEELNNQRKELTTEVYDKCMALIRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRSI GF++ ++ EE + Sbjct: 346 PDFHEGVLGLVANKIVEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEE-LFT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++ G L + +K H I D L ++ + Sbjct: 405 KFGGHDFACGLSMTEDKIGALREKLEKGFHVEGGLEIKE----YDMELPLQGLSPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+ P+F+ N + + H++ + +L I F Sbjct: 461 INQVGPFGTGDAQPIFSISNPTITQFFKIGKEKNHVKFNVAKKGG-SLAVIGFN------ 513 Query: 554 GEFLMQSRGKRM-HVTGHLCVNYWRGSKRCQLRVLDAS 590 +FL + + V L +N + Q + Sbjct: 514 KDFLNNNLLPFIARVFVQLSLNTYHNKISLQGIIEGIE 551 >gi|119897796|ref|YP_933009.1| single-stranded-DNA-specific exonuclease [Azoarcus sp. BH72] gi|119670209|emb|CAL94122.1| single-stranded-DNA-specific exonuclease [Azoarcus sp. BH72] Length = 563 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 167/580 (28%), Positives = 267/580 (46%), Gaps = 25/580 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 A A+ I ++AR+ R ++ L+ S++ L+P P LT Sbjct: 3 QIHPRAVPQRAAAALM-DAGIHPLLARLYAARGIARSSD---LDTSLKALLP-PQALTGT 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 +AA+ + AI +++I DYD DGA + A+ +R L + + +PDR+ GYG Sbjct: 58 AEAAQLLADAIEAGARMVIVADYDCDGATACAVGVRALRAFGADVHYLVPDRVTLGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P+++E ++ITVD G S + + A G+ I+ DHH A +VNPN Sbjct: 118 PAMVEIAARLEPDVLITVDNGIASVEGIAAARAHGMATIITDHHLPGDVLPDADVIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPL 256 + L G +F ++ + LR+ +L LLDLVAL TV DVV L Sbjct: 178 QPGCDFPSKALAGVGAMFYTMLALRAELRERGAFAGGQEPNLADLLDLVALGTVADVVKL 237 Query: 257 IGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGES 314 NR V +GL R + PG++AL +LG+ +GP +NA GR+ + Sbjct: 238 DHNNRILVAQGLQRMRAGRMQPGIRALFAAAGREPARANTFDLGFAVGPRLNAAGRLSDM 297 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +LG LI+DD +A +LD LN+ RR +E+ M E+A ++ + D ++ I + Sbjct: 298 SLGIECLITDDPGRALNIAQELDKLNRERRSIEAGMQEEAALRL--EGFDPGASASIALF 355 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432 WH G++G++A R+KEK RP+ A + DG+ GSGRSI G + + Sbjct: 356 EPDWHQGVIGIVAGRIKEKLHRPTIAFARGNDGELKGSGRSIAGLHLRDALDLVTKQHPD 415 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++V+ GGHAMAAGLT+ +F R F++ +V + DG L A +++ Sbjct: 416 LIVRFGGHAMAAGLTIREADFDRFSSVFEEVVAGLVEPAALQRRIETDGALEAGYLSLES 475 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +LE +G G P PVF +++ R++ HL++ + AI F Sbjct: 476 ARLLEK-EIWGQGFPAPVFD-DVFRVERQRILKDRHLKLEL-GKQGARYDAIQFNFADGA 532 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N + G QL + Sbjct: 533 ---------PDTIRAAYRLSINEYNGVSNVQLMLEHFEAA 563 >gi|86158958|ref|YP_465743.1| single-stranded-DNA-specific exonuclease RecJ [Anaeromyxobacter dehalogenans 2CP-C] gi|85775469|gb|ABC82306.1| exonuclease RecJ [Anaeromyxobacter dehalogenans 2CP-C] Length = 564 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 193/560 (34%), Positives = 284/560 (50%), Gaps = 23/560 (4%) Query: 40 PDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ARVL R A+ FL + L PDP + + A RI +A+ E+I + Sbjct: 20 HPLAARVLAARGHADPAEAEAFLAARLADL-PDPFRMKGMEAAVERIARALEGGERIACY 78 Query: 99 GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 GDYDVDG S AL+ FL + Y P R+V+GYG N + +G +L++T+DC Sbjct: 79 GDYDVDGVTSTALLCGFLRAAGADVVTYTPHRLVEGYGLNGDAVRSLAAQGVRLLVTLDC 138 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G TS D ++ A G+D +V+DHH V E A A++NP++ L A GV F + Sbjct: 139 GITSVDEVRVAAGLGVDTVVVDHHTVPVELPAAAAILNPHQPGCAYPSKDLAAVGVTFAL 198 Query: 219 LVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 + + R LR+ + +L +LDLVAL TV DVVPL+G NR V GL Sbjct: 199 AMALRRRLRERGRFGPARPEPNLKEVLDLVALGTVADVVPLVGANRILVRWGLEQLATSR 258 Query: 276 NPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG++AL +P+TA +G+ + P INA GR+ ++ G RLL+S D+ + LA Sbjct: 259 RPGVRALKRVAGIADGTPVTAGQVGFRLAPRINAAGRLDDAGRGVRLLLSGDAAAAQALA 318 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +LD NQ R+ +E +LEQA A + + V + D WH G+VG++A+R+ E+ Sbjct: 319 DELDRENQARQEIERRILEQALADAGARVAAGARGLV--LARDGWHAGVVGIVASRVVER 376 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453 F RP+ ++ EDG G GSGRSIEGF + ++ G L + GGH AAG+TVER Sbjct: 377 FHRPAVLVA-LEDGAGKGSGRSIEGFHLYDALAAC--SGHLARFGGHRHAAGVTVERAQV 433 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 F+ A + P +IDG + + V + L GP+GAG+P PVFA Sbjct: 434 EPFRAAFEAHAAATIADEDLVPRCRIDGWVGDAEVTEDAAEGLARLGPFGAGHPEPVFAL 493 Query: 514 PNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 ++ V AHL++ L AI F + + G + + Sbjct: 494 RGAAARARTVGAGGAHLKLAL----GRGLDAIGFGMGDR------APACGGPVDAAFTIG 543 Query: 573 VNYWRGSKRCQLRVLDASPV 592 + W G++R QL++ D P Sbjct: 544 FDEWDGTRRLQLKLKDLRPA 563 >gi|323466353|gb|ADX70040.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus helveticus H10] Length = 757 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 162/579 (27%), Positives = 276/579 (47%), Gaps = 34/579 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W +E A + +K+ + I AR+ R ++ D DF + + DP ++ Sbjct: 2 KWQQRTAEE---LAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 59 DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T + ++YA G+D I+ DHH + + AYA+V+ Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ-----------DPVPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL V + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLDVLNQTERPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + ++ V Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ ++G+ GSGRS GF++ ++ +E +L Sbjct: 346 PDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSFIGFNLFDALNPL-KESLLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L F+ H D L ++ + Sbjct: 405 KFGGHDFACGLSMEEDKVNDLRKKFEADFHVDGGLETKE----YDMELPMHDLSPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAI-AFRVYGTP 552 + GP+G G+P P+F+ + + + H+++T +D AI F Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLTANKKDGNL--AIVGFN----- 513 Query: 553 LGEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590 ++L + + L +N +R Q + + Sbjct: 514 -KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGIA 551 >gi|239637559|ref|ZP_04678531.1| single-strand DNA-specific exonuclease [Staphylococcus warneri L37603] gi|239596777|gb|EEQ79302.1| single-strand DNA-specific exonuclease [Staphylococcus warneri L37603] Length = 760 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 162/581 (27%), Positives = 285/581 (49%), Gaps = 30/581 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W E I+ +I ++ + I+ ++L ++ + + + LN + D Sbjct: 4 SKYNWNLNNPTEYISD--SIAKRLKLSPIIKKILESKQIIEEEDIQQTLNG--IDINHDI 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D DKA RI QAI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 SLLSDIDKAIERINQAIDKNERILVYGDYDADGVTSTTILVHTLQKLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + ++ A G+DVIV DHH++ AY Sbjct: 120 EGYGPNEMAFQNAYDEGISLIITVDNGIQGHAEIKMAQELGVDVIVTDHHEIGRTLPEAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + + A+ T+ D Sbjct: 180 AIVHPMHPEFDYPFKYLCGAGVAYKLAQALLENVPN-----------YFKAYAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR+ V GL V +KAL+++ + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRSIVQHGLKVMNDSCPVAVKALLKQAGYNDDITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD E E LA +++ NQ R+ + + + E+A + + Q ++ Sbjct: 289 DASLAAELLMSDSEDEAEFLAEQVEHFNQERKDIVAHITEEAL--AIAKDYVSQGHQFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E F P+ ++ E GS RSIE + + Sbjct: 347 LAKEDWHEGVLGIVASKIVETFSLPTLILNIDHEQNHAKGSARSIEQVSM--FEILNAHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T++ N L + ++ + P K+D +L+ S + I Sbjct: 405 DLISKFGGHHMAAGMTMDIDNVEALRNGLNEWMAKLSETTSLEPSKKVDVLLDESDITIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 I ++ P+G +P+F N +QS++ + HL+MT + L A+ + Sbjct: 465 NIKDIQKLSPFGTDFNSPLFEIQNMTIQSLKAIGKEQNHLKMTLGDSN---LPALFW--- 518 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+ +++ G+L +N W G++ Q V D + Sbjct: 519 -QNGAYATQLETGQPVNLIGNLQINEWNGNQTPQFIVQDIA 558 >gi|302385083|ref|YP_003820905.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium saccharolyticum WM1] gi|302195711|gb|ADL03282.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium saccharolyticum WM1] Length = 572 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 159/580 (27%), Positives = 272/580 (46%), Gaps = 29/580 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W+ + + + H I + AR++ NR+V + + +L ++ L P +L Sbjct: 5 KWMLQTKRADF---EEMARCHHISPVTARIIRNRDVMGREAVRKYLWGELKDLY-SPHLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+ + + + I I GDYD+DG S L+ + L+ + IPDR+ DGY Sbjct: 61 KDMDRTVGILKEKTEQLKPIRIVGDYDIDGVCSTYLLYQALTKVGAVVDYEIPDRLKDGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-----IP 190 G N S++ +G I+T D G + + ++ A G+ V++ DHH + E P Sbjct: 121 GINESIIRAAAGDGIDTILTCDNGIAAVEQIRLAKELGLTVLITDHHDIMKENGREILPP 180 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A+VNP + D +C V + ++ +Y L +++ A+ATV Sbjct: 181 ADAVVNPKQEDCTYPFPDICGGMVAYKLVQALYEAF-----HVPMEKWLEMVEFAAIATV 235 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309 DV+ L NR V +GL R + GL LIER + ITA +G++IGP +NAGG Sbjct: 236 GDVMKLQDENRIIVKEGLKRMGRTKSLGLLKLIERNDLDKEQITAYQIGFVIGPCLNAGG 295 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + L LL+S + +E + +A +L LN R+ M +A +V + Sbjct: 296 RLQTAKLALSLLLSRNEEEADQMARELKELNDRRKDMTKQGTSEAVEQVEALYRGDK--- 352 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+VV H + G++A RL+E + +P+F ++ E+ GSGRSIE + + + Sbjct: 353 VLVVYLPDCHESLAGIIAGRLREYYQKPAFVLTDGEECV-KGSGRSIEAYHM--FDALVR 409 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + +L+K GGH MAAGL++ + + + A + ID + +N Sbjct: 410 VKDLLLKFGGHPMAAGLSLLKDHVDEFRKCLNEQAR--LTEEDFIRKVWIDVPMPLEYIN 467 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFR 547 LI LE P+G GN P+FA ++S+RV+ ++ + + + A+ F Sbjct: 468 EPLIQELELLEPFGQGNEKPLFAQKGLHIRSVRVLGKNRNAVKFSLATDQGTPMDAMLFG 527 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + L E + + V + VN + G+K Q+ + Sbjct: 528 DGDSFLKEL---GDSRILDVIYYPSVNEYNGNKTLQVIIR 564 >gi|300361887|ref|ZP_07058064.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri JV-V03] gi|300354506|gb|EFJ70377.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri JV-V03] Length = 756 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 163/577 (28%), Positives = 287/577 (49%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + + + + + DI A++ R ++ DFL + + DP ++ Sbjct: 2 KWQQR---QASSLDQELIEDYGLTDIQAKLFALRGINTAEKLDFLLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K+ RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ S ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ A++ V+ Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ LI++ ++ ITA ++G+ I P +NA GR+ +++ Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRTLIKQAGLTMGQITATDVGFNIAPRLNAVGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A K++ LN R+ + + + E+ A+V + Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEEIAAKIEELNNERKELTAEVYEKCLAQVEEKGW--QHRNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E+G+ GSGRS EGF++ + +++ L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSEGFNLFDALEP-MKDDFLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ L F+K + D LN V + Sbjct: 405 KFGGHDFACGLSLKVDKLEELRSRFEKSFKPSTDLEVK----DFDFELNLREVTPDTLTE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP PVF+ ++S+ + H++ T E + + L + F G Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFTAEKNNGK-LTIVGFN-KGFLN 518 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + L +N W+ Q + Sbjct: 519 QNLLPFIKELYV----TLALNSWKNVSSVQGMLAGIE 551 >gi|90408297|ref|ZP_01216462.1| putative single-stranded-DNA-specific exonuclease RecJ [Psychromonas sp. CNPT3] gi|90310598|gb|EAS38718.1| putative single-stranded-DNA-specific exonuclease RecJ [Psychromonas sp. CNPT3] Length = 574 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 177/559 (31%), Positives = 280/559 (50%), Gaps = 20/559 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++ ++ ++R ++ L+ S + L+ L +A + QA+ +++KI+I Sbjct: 21 CSALLQKLYIDRGITS---VSELDLSTKTLLSA-SSLKGISEACSLLYQALLSAKKIVIV 76 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + L N + IP+R GYG P ++ I +GAQL+ITVD Sbjct: 77 GDFDADGATSTALSLLCLRELGFMNVDYLIPNRFDYGYGLTPESVDLAIAKGAQLLITVD 136 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G +S + YA +G+ V++ DHH A +V+PN+ D L +L GV F Sbjct: 137 NGISSIKGVAYAKEKGLQVLITDHHLPAEVLPNADVIVDPNQKDCLFPSKNLAGVGVAFY 196 Query: 218 VLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 ++ + + Q + L LD+VAL TV DVV L NR V +GLM R Sbjct: 197 IMSALRSYMIQKDHFSDKGIRPPTLTKFLDIVALGTVADVVILDANNRTLVEQGLMRIRA 256 Query: 274 Q-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 G+ ALI+ + + A +LG+ +GP +NA GR+ E G LL+ +D+ + ++ Sbjct: 257 GACRLGISALIKVAKRAQHSLVASDLGFSLGPRLNAAGRLDEMRHGVELLLCEDAVQADL 316 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARL 390 LA +LD LN RR +E M E+A + D + I + + WH G++GL+A+R+ Sbjct: 317 LAQELDALNHTRREIEQGMQEEALQALENLALDEKNMPYAICLFDESWHQGVIGLVASRI 376 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTV 448 KE++ RP+F + D + S RSI G I ++ G+++K GGHAMAAGL++ Sbjct: 377 KERYYRPTFVFAKANDTEIKASARSIAGIHIRDILDLLDKKMPGMILKFGGHAMAAGLSI 436 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + +F R + + V A I V DG L + + L +AGP+G G P Sbjct: 437 KATDFERFKQGLNEVLASQVDADILQNVLLSDGPLQGKDLTLEQAYELRNAGPWGQGFPA 496 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 P+F K+ R+V HL+M E + + AIAF V + R +++ Sbjct: 497 PLFDAY-FKIIEQRLVGEKHLKMVLECE-GTVVDAIAFNVD----LDIWPDPRIRQVFCA 550 Query: 569 GHLCVNYWRGSKRCQLRVL 587 L VN +RG+ QL + Sbjct: 551 YRLDVNEFRGASNVQLLIE 569 >gi|153873193|ref|ZP_02001854.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. PS] gi|152070341|gb|EDN68146.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. PS] Length = 584 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 172/571 (30%), Positives = 269/571 (47%), Gaps = 30/571 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + ++ RVL RN++ L+ ++ L+P +L + +KA + +A+ +I+I Sbjct: 20 LHPVIQRVLAARNIND---VSELDYGLQNLLPYQSLL-NIEKAVNLLYEALTKQSRILIV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK----------FIN 147 D+D DGA S A +R L +PDR GYG P ++E Sbjct: 76 ADFDADGATSCATAIRALQQMGAQKVGFLVPDRKKHGYGLTPEIVELAQKESILAYTPPG 135 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 EG L++TVD G +S ++ A +G+ V+V DHH + A A++NP + D Sbjct: 136 EGPDLLMTVDNGISSITGVEVAQQKGMRVLVTDHHVAGEQLPKADAIINPKQKGDQFPSK 195 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAY 263 +LC GV+F V++ + LR ++ LLDLVAL TV DVV L NR Sbjct: 196 NLCGVGVIFYVMMALRVHLRDKGWFTQQNIPEPNIAYLLDLVALGTVADVVELDYNNRIL 255 Query: 264 VVKGLMVARRQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R PG++AL++ + A +LG+ +GP +NA GR+ + + G L Sbjct: 256 VEQGLRRIRANYCCPGIRALMQVSKRDQSTLIASDLGFYVGPRLNAAGRMDDMSYGINCL 315 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 +SDD A L + NQ RR E+ M +A + T D + I + ++WH G Sbjct: 316 LSDDDISARQHAELLQMFNQERRFEETKMQTEALEMITTLGDIDKLPLGICLYEEKWHQG 375 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGG 439 +VG+LA+R+K++ RP + +++ GSGRSIEG I ++ G++ GG Sbjct: 376 VVGILASRIKDRLHRPVIIFTHDKEDTIRGSGRSIEGVHIRDVIDTISTQNPGMISHFGG 435 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGLT++R F F + A DG L+A N+AL + L + Sbjct: 436 HAMAAGLTIQREQFKHFQQAFDTEIRQYLSADELQGTLVSDGALSAEDFNLALAEQLRTI 495 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLM 558 P+G PVF ++ R++ HL+M + ++ IAF + Sbjct: 496 TPWGQNFLEPVFDGE-FEVLEHRILKEKHLKMQVRPLEGGPSVDVIAFNIIDGNW----- 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 R+ + L VN +RG K QL Sbjct: 550 TGEVNRIQLAYRLDVNVYRGFKNLQLMAKHL 580 >gi|75908589|ref|YP_322885.1| exonuclease RecJ [Anabaena variabilis ATCC 29413] gi|75702314|gb|ABA21990.1| exonuclease RecJ [Anabaena variabilis ATCC 29413] Length = 730 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 289/633 (45%), Gaps = 65/633 (10%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW L + A + + IV ++L+NR + + + A+ FL P L Sbjct: 16 LPNQRWQIHLQKTD--LAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSP 73 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D + + +AI + KI I GDYD DG S AL++R L + IP R+ Sbjct: 74 LTEFPDLAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRM 133 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++E+F +EG +LI+TVD G ++++ + A G++VI+ DHH + + PA Sbjct: 134 HEGYGINKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPA 193 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP + + S + GV +++ V + + L + + + +L L L T+ Sbjct: 194 DAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGL-----IQPMLALFTLGTIA 248 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN------------------------ 287 D+ PL G+NR +V +GL + + PG++ALI+ Sbjct: 249 DLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLI 308 Query: 288 --------------------ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 + E++G+ +GP INA GRIG+ LL +DD Sbjct: 309 NNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEG 368 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLL 386 AM+ + N +R+ M + +QA A V +QQ V+VV WH G++G++ Sbjct: 369 LALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNWHHGVIGIV 428 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 A+RL E++G P F ++E++ GS RSI F++ + + + +L K GGH A G Sbjct: 429 ASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCH--DLLGKYGGHKAAGGF 486 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 + N +L +FA+ + P+ +ID N + ++ L L S P G N Sbjct: 487 SFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDN 546 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES---QDSETLQAIAFRVYGTPLGEFLMQSRGK 563 P+PVF PN ++ ++V H+++T +AIA+R Sbjct: 547 PDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYY-------PLPP 599 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 R+ + L N + G+ +L +L + Sbjct: 600 RLDIAYKLRENNFNGNTSLELELLGVRLAQKQL 632 >gi|326201895|ref|ZP_08191765.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium papyrosolvens DSM 2782] gi|325987690|gb|EGD48516.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium papyrosolvens DSM 2782] Length = 576 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 170/592 (28%), Positives = 282/592 (47%), Gaps = 34/592 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ + ++++ I +++ R++VNR + +D A+ ++ ++ L DP + Sbjct: 2 QKWILKNPKFDF---KKMSKELGISELLCRIIVNRGIKDLDNARKYIKADLQGL-NDPRL 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D + + I ++KI I GDYDVDG S ++ + L+ C N + IP RI+DG Sbjct: 58 MKDMVLGVSIVQEKIKLNKKIRIIGDYDVDGVVSTYILYKALARCGANVDYAIPHRILDG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N SL+E +N+G IIT D G + + +Q+A G+ VIV DHH V A A+ Sbjct: 118 YGINNSLVENALNDGIDTIITCDNGIAAREQIQFAKESGMTVIVTDHHDVPDIIPEADAI 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ + D LC AGV F ++Y + + + VA+ATVCDVV Sbjct: 178 IDMKQADCRYPFKLLCGAGVAFKFTQVLYEEM-----CIPREEEAEFYEFVAIATVCDVV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L NR V KGL N GL AL+++ IS I +LG++IGP INA GR+ Sbjct: 233 DLTEENRILVRKGLNTIADTKNIGLNALLQKTGISGKSIGVYHLGFIIGPCINASGRLDW 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G +LL+ D+ QE E LA +L LN R+ M +E + + D++ V+VV Sbjct: 293 AMKGLKLLLIDNQQEAEALAAELYELNNERKSMTVKGVEDTIETI--ENSDLKGDRVLVV 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 H I G++A +++EK+ P+F ++ E+ GSGRSIE +++ + + Sbjct: 351 YKPEIHESIAGIIAGKVREKYNVPTFILTRGENCV-KGSGRSIEEYNM--FEELLKCKEL 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 K GGH MAAG +++ L + + P ID + SA+NI Sbjct: 408 FTKFGGHPMAAGFSLDADKVDILRERVNSI--TTLTEDDLIPKIYIDAHIPLSAINIRTA 465 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551 + L PYG GN P+FA N ++ V L++ ++ +S + + F Sbjct: 466 EELSYLEPYGKGNTKPLFAEKNISVRKATVFGNERKVLKLRLQNGNS-FVDCVYFGNIDE 524 Query: 552 ---------PLGEFLMQSRGK----RMHVTGHLCVNYWRGSKRCQLRVLDAS 590 E G+ ++ + ++ +N + G + Q+ + Sbjct: 525 FDTYVSERFGSEELQNIYAGRNSIIKLDMIFNIDINEYNGYRNVQIVLQYYR 576 >gi|237746044|ref|ZP_04576524.1| ssDNA exonuclease [Oxalobacter formigenes HOxBLS] gi|229377395|gb|EEO27486.1| ssDNA exonuclease [Oxalobacter formigenes HOxBLS] Length = 565 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 167/565 (29%), Positives = 266/565 (47%), Gaps = 25/565 (4%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + + ++AR+ R +S L+ + L+P P L D+AA + AI KI Sbjct: 19 RTGVHPVLARIFAARGISDP---AELSTGLSGLIP-PGRLLHIDRAASFLADAIALGRKI 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK-FINEGAQLII 154 + DYD DGA + AL +R L A+ +P+R +GYG P+++++ +++ Sbjct: 75 TVVADYDCDGATACALALRGLKLLGAQADYMVPNRFDNGYGLTPAIVDEAKKQHATDVLV 134 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G S + + A +DV+V DHH E +VNPN+ D L GV Sbjct: 135 TVDNGIASLEGIGRAVELQMDVLVTDHHLPGDELPKNCIVVNPNQPDCTFPSKSLAGVGV 194 Query: 215 VFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +F VL+ + +R+ L LLDLVAL T DVV L NR V +GL R Sbjct: 195 MFYVLLALRAEMRRRKVFDEKTQPRLDHLLDLVALGTFADVVRLDANNRILVAQGLRRIR 254 Query: 273 RQ-GNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 G+ AL ++ +LG+ +GP +NA GR+ + LG L++DD Sbjct: 255 SGVMQAGVAALFRVSGRDFRKASSFDLGFAVGPRLNAAGRLSDMGLGIECLLTDDESRAF 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +L+ +N RR +E+ M +A K+ + + + V + WH GI+G+LA+R+ Sbjct: 315 QMAEELNRINIERREIEADMRIEAREKIAK--VHPENRATLCVLSEDWHQGIIGILASRI 372 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEK RP+ A + +DG+ GSGRSI F + + G++V+ GGHAMAAGLT+ Sbjct: 373 KEKHFRPTMAFATGKDGEIRGSGRSIPEFHLRDALDLIAKRHPGLIVQFGGHAMAAGLTL 432 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 F + F+ A + + DG L+ ++ I++LE+ +G G P Sbjct: 433 RSGGFDAFSEAFEAVAREWLTQTQLERQIETDGSLDDDCFSLDFIELLET-QVWGHGFPP 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 P+F + + R++ H ++ + D AI F +R+ + Sbjct: 492 PLFCDE-FTVINQRILKDRHSRLQLQKND-RYYTAIRFGSTEL---------LPRRVRLA 540 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L N + G QL V A +E Sbjct: 541 YRLDANEYNGKTSVQLIVEHAEGLE 565 >gi|296120942|ref|YP_003628720.1| single-stranded-DNA-specific exonuclease RecJ [Planctomyces limnophilus DSM 3776] gi|296013282|gb|ADG66521.1| single-stranded-DNA-specific exonuclease RecJ [Planctomyces limnophilus DSM 3776] Length = 583 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 170/588 (28%), Positives = 277/588 (47%), Gaps = 21/588 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W + + I ++ARVLV R + + + F + + L DP Sbjct: 7 RVWQY--AHVDQESIRRLAAELQISPLLARVLVARKIHTREMGLKFFSRKLSELH-DPEQ 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +AA RIV+AI + I I+GDYDVDG + +L+ + + YIP R+ +G Sbjct: 64 LPGISQAADRIVEAIKHQRLITIYGDYDVDGVTATSLLWHCIRLAGGRSEYYIPARLEEG 123 Query: 135 YGPNPSLME-KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YG N + +E + +QL+++VDCG TS + A G+++I+ DHHQ Sbjct: 124 YGLNSTAIETLAAQDPSQLVVSVDCGITSLIEARRARELGLELIITDHHQFAENFPEETI 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVC 251 LV+P G LC AGV F + + L + + LLS + L A+ TV Sbjct: 184 LVHPRLPGSSYPFGELCGAGVAFKLAWAVCARLGDGKKASPRMKEFLLSAIGLAAIGTVA 243 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGG 309 DVVPL G NR V GL + + GLKALI+ + + A+++G+ +GP INA G Sbjct: 244 DVVPLTGENRVLVHYGLSTIGEKSSIGLKALIKAAGLHEKTSLAADDIGFSLGPRINAAG 303 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G++ L LL +D+ + LA LD LN+ R+ +E M +QA+ V ++ + Sbjct: 304 RLGQARLAVELLTTDNEDRAQKLAAYLDELNKQRQSLERKMFKQAKDLVNDHPAWSEEKA 363 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA 428 + V+ D WH G++G++A ++ E F RP+ + GSGRS GF++ + + Sbjct: 364 L-VLTHDEWHAGVIGIVAGKVAESFQRPAILLGPSTSADILQGSGRSFAGFNLHEGLVAC 422 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E L+ GGH A G+ + R + F + ID + + Sbjct: 423 REH--LITFGGHHAAVGMKLSRKHLDTFRASLVDFVSQNHSVEPGSAPLPIDAEVTFQEI 480 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQAIA 545 + I+ L+ P+G+ NP P+FA +L + + + HL + + D +TL+A+A Sbjct: 481 STRAIEELDLLAPFGSANPRPMFAATRVELAAPPKTMGEGGRHLSLLLKQHD-KTLRAVA 539 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F E + +H+ +N +RG + L + D +P Sbjct: 540 FGQGE--WAEEIAAHSA--IHLAFQPIINEFRGQRNVDLHIKDWAPAT 583 >gi|262280478|ref|ZP_06058262.1| ssDNA exonuclease [Acinetobacter calcoaceticus RUH2202] gi|262258256|gb|EEY76990.1| ssDNA exonuclease [Acinetobacter calcoaceticus RUH2202] Length = 566 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 174/559 (31%), Positives = 263/559 (47%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L + A + QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAPE-LKGLETAVALMDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYHPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A + VI+ DHH E PA A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVETAQALDMQVIITDHHLTTKETPPAQAVVNPNQLGCDFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNKQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ S + A++LG++IGP INA GR+ +G L++++ + +A Sbjct: 253 RVGILALLDIAGREASSLRAQDLGFVIGPRINAAGRMESMRIGIECLLAENMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E M +QA + + + Q +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDIPQALVLFEESWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + + DG L ASA+ + +D +E GP+G P P Sbjct: 433 ENFDAFKTVFTGCVAAM-EESLFQATLWTDGELPASALQLDTLDWIEQLGPWGQKFPFPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D T AIAF G F +H+ Sbjct: 492 FEG-HFKVVDYRWLKETHLKLRLAL-DQYTFDAIAFNAA----GRFEFNPMRDEVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 MDRNAFNGNVNLQLRIVHL 564 >gi|312872300|ref|ZP_07732370.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 2062A-h1] gi|311092123|gb|EFQ50497.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 2062A-h1] Length = 761 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 163/573 (28%), Positives = 280/573 (48%), Gaps = 30/573 (5%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80 ++ + + K+ + I A++ R ++ D DF LN L DP ++ D +K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMEK 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 63 IVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GG Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A GL++++ + +L + F+ + + + D LN + + + + Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQIAKV 465 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 GP+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518 Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|228475196|ref|ZP_04059922.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus hominis SK119] gi|228270807|gb|EEK12209.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus hominis SK119] Length = 757 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 142/581 (24%), Positives = 283/581 (48%), Gaps = 30/581 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S ++W+ ++ I+ I ++ + IV ++L +++++ D +N + + D Sbjct: 4 SKYKWLYEAPKQNISS--EIIKEFNLSPIVRKILESKSITQYDEINTLINGTNKK--HDS 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +++D KA RI AI +E+I+++GDYD DG S ++++ L YIP+R Sbjct: 60 WLMSDMQKAVDRINLAIDKNERILVYGDYDADGVTSTTILVQTLQKLGAEVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G ++ ++ G+DVIV DHH++ AY Sbjct: 120 EGYGPNKYAFQNAYDEGVSLIITVDNGIQGHEEIEMVQALGVDVIVTDHHEIGRTLPKAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P + +LC AGV + + + + + L + T+ D Sbjct: 180 AIIHPMHPEFEYPFKYLCGAGVAYKLSQCLIDHPPE-----------YFIVLATIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +GL + +++L+ + + I +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRTIVQEGLKYLNQSCPFQIQSLLNQAGFNDEIDEGTIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+++DS+E LA +++ N R+ + + + E+A + ++ Sbjct: 289 DASLAAELLMAEDSEEANFLAEQVEAFNIERKDIVAQITEEALLMANEKV--ENGDKFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ + E GS RSIE + + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDLEQHHAKGSARSIEQVSM--FEILSAHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+E N L ++ + P I L+ + ++ Sbjct: 405 DLISKFGGHHMAAGMTMEIDNIDALSKGLNEWMVQLSKHTSLEPTKHITTKLSEDDITVS 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I ++ P+G P+F + ++ ++ + HL++ + L F Sbjct: 465 NIHDIKILKPFGTDFEKPLFELDDTEVNDVKAIGKDKNHLKLVTGQAKLQHL----FWKN 520 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + + + G+ +++ GHL +N W G++ Q+ + D + Sbjct: 521 GGLITQIEL---GQPVNIIGHLQINEWNGNQTPQMMIQDLA 558 >gi|187934983|ref|YP_001884985.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum B str. Eklund 17B] gi|187723136|gb|ACD24357.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum B str. Eklund 17B] Length = 588 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 174/601 (28%), Positives = 292/601 (48%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + I++K+ I +++ R+++NRN+ D K++++P DP + Sbjct: 4 RWFVKNIKADY---KNISKKYGISELITRLMINRNIVEDNMIKNYIHPIYSNFH-DPYEM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA + + IY+ EKI I GDYDVDG SV L+ L C N + IPDRI DGY Sbjct: 60 KDIEKATEILKEKIYSKEKIRIIGDYDVDGVISVYLLYTALKKCGANVDYEIPDRIKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N ++ + N+ ++T D G ++ + ++YA G+ VIV DHH + E Sbjct: 120 GINKKIILEAKNDEIDTLLTCDNGISAIEQIKYAKELGMTVIVTDHHDIPFAEDEKGDRT 179 Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 +++NP +++ +C AGV F ++ ++Y ++ +L L++ V Sbjct: 180 FISSEADSIINPKQIECGYKFDKICGAGVAFKLIEVLYEKMKISK-----EELYKLIEFV 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPS 304 A+ATVCDVV LI NR +V GL + N GLK L++ + I+ +LG++IGP Sbjct: 235 AIATVCDVVDLIDENRIFVKNGLKMINNTTNLGLKYLMKETKMDGKEISTYHLGFVIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + G RLL+S + +E LA +L LN R+ M S +E+A + + Sbjct: 295 INASGRLDSAKKGLRLLLSQNEEEALNLAKELVELNDERKSMTSHGVEKAIEII--EDST 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ V V+ H + G++A R++EK+ P+ ++ EDG GSGRSIE +++ Sbjct: 353 MKDDKVFVIYIPEVHESLAGIIAGRIREKYNVPTIILTKAEDGV-KGSGRSIEEYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +L K GGH MAAGL+++ N L + + + P ID L+ Sbjct: 410 EELLTCKELLNKFGGHPMAAGLSLDENNIDLLRKKLNR--NTKLTDEELVPKVIIDVPLS 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 +N +I+ LE P+G GN P+F N V+ L++ ++ T+ Sbjct: 468 LENINYDMINDLEILEPFGKGNSKPLFGAKNVNAVKAMVLGQNKNVLKIKLKTVIGRTID 527 Query: 543 AIAFRVYGT---------PLGEFLMQSRGK----RMHVTGHLCVNYWRGSKRCQLRVLDA 589 +I F E G+ + + + +N + G+ Q+ + + Sbjct: 528 SIYFGDIQEFEQYITKKYNYEELQKLYDGEFNSVNLDLIFYPSINEYNGNINIQIVIQNY 587 Query: 590 S 590 Sbjct: 588 R 588 >gi|291286458|ref|YP_003503274.1| single-stranded-DNA-specific exonuclease RecJ [Denitrovibrio acetiphilus DSM 12809] gi|290883618|gb|ADD67318.1| single-stranded-DNA-specific exonuclease RecJ [Denitrovibrio acetiphilus DSM 12809] Length = 592 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 186/594 (31%), Positives = 301/594 (50%), Gaps = 23/594 (3%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69 S+ ++W+ + + + + +P + L R + D + ++ + Sbjct: 7 KSLR-YKWIYR--KPECSDISELADELGMPVCITEALYKRELFNADVLDAYFKTPLKGI- 62 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 P ++ D +KAA I ++I N+ KI I+GDYDVDG SVALM FL + YIP+ Sbjct: 63 SSPFLIKDMEKAAAAIAESIKNNTKICIYGDYDVDGVTSVALMFLFLKEVGADVTYYIPN 122 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYG N + ++ G++LIITVDCG + + +QYA + G++VI+ DHHQ Sbjct: 123 RLQEGYGLNKTAIKDIAEAGSRLIITVDCGINAMEEVQYAVSMGVEVIITDHHQPSESIP 182 Query: 190 P-AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVAL 247 A A+VNP R DD S L GV F +++ + L + + ++ LDLV L Sbjct: 183 EGAAAVVNPMREDDTSAFKGLSGVGVAFKLVMALRYKLNESGRFKGKIPNIKKYLDLVTL 242 Query: 248 ATVCDVVPLIGLNRAYVVKGLMV-ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 T+ DVVPL+G NR V GL + + + PGL+ L I +T ++G+ + P I Sbjct: 243 GTIADVVPLVGENRIIVRHGLEILSGKNCRPGLRELKRVAGIDGQKVTTTHVGFGLAPRI 302 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+G S+ G RLLI++D ++ LA +LD N++R+ +E ++E++ +V + Sbjct: 303 NAVGRMGASDKGLRLLITNDREQSLYLAEELDKENKSRQDIERHIIEESFKRV-EKNKLH 361 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ +V+ + WH G++G++A+RL EK+ P+ ++ EDG G GSGRSI FD+ K + Sbjct: 362 EKYKGLVLYSEEWHQGVIGIVASRLVEKYNLPAIVLT-FEDGVGKGSGRSIPSFDLYKGL 420 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + IL+ GGH AAGL +E + L F K +++ KID ++ Sbjct: 421 E--QMQDILLSFGGHKYAAGLRIEEQHITSLQKRFHKAVEDLLEPKDFVAELKIDALMEP 478 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVNLA--HLQMTFESQDSETLQ 542 S V+ L+ L PYGAGN PVF K Q V HL++ E ++ + Sbjct: 479 SDVSSELMKWLGRMEPYGAGNREPVFCMRGVNKHQEPVFVGRESMHLKIFLE-KNGKVFD 537 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN-YWRGSKRCQLRVLDASPVEGH 595 I + + + + + Y+ G QL + D P +G Sbjct: 538 CIGYNMKAYK----DVVYGNESFDIVFSPAATGYYHGRYT-QLVLKDIKPADGE 586 >gi|302875218|ref|YP_003843851.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium cellulovorans 743B] gi|302578075|gb|ADL52087.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium cellulovorans 743B] Length = 589 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 170/599 (28%), Positives = 278/599 (46%), Gaps = 47/599 (7%) Query: 29 RALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87 A + I I+A++L +R + D + FL SI M DP ++ D D A I++ Sbjct: 4 AAQKLATDSFISPIIAKLLWDRGIRDKDEVEKFLKGSIDE-MYDPFLMKDMDLATSIIIK 62 Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147 AI+ +KI+I+GDYDVDG S +M + L +IPDR +GYG N +E Sbjct: 63 AIFEEKKIVIYGDYDVDGVTSTVIMFKALKRVGARVTYHIPDREKEGYGLNKKSIEVLRE 122 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK----------SEEIPAYALVNP 197 +G +IITVD G + + ++YA G V++ DHH + A A++NP Sbjct: 123 QGNSVIITVDNGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGERKEILPNADAIINP 182 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 R D +LC A + F V ++ + D K N L +ATVCDVV LI Sbjct: 183 KRSDCNYPFKYLCGASIAFKFAVALFIKRKIDYKEAYN----EYLQFAGIATVCDVVDLI 238 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGPSINAGGRIGESNL 316 NR + L N G+ +L + ++ I+ +G+++GP INA GR+ + + Sbjct: 239 DENRVILKNALKSINNSKNIGINSLRKFTLSLDKEISVYAIGFVMGPCINATGRLENAKM 298 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL++ + + E LA +L LN+ R+ M + +E+ ++ + D V+VV Sbjct: 299 AVELLLTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEI--ELGDYYNDKVLVVYEP 356 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 H I G++A R++EK+ +P+ ++ +G GS RSIE ++I + +L K Sbjct: 357 TIHESIAGIIAGRIREKYNKPTIILTKAVEGV-KGSARSIEEYNIY--EELLKCKNLLDK 413 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH MAAG++++ N L + I+ P ID L++ ++ ++I + Sbjct: 414 FGGHPMAAGMSLKEENIEPLRETLNGKC--ILTDEDMIPKVVIDFPLSSHKIDDSIIYDI 471 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF-------- 546 P+G GN P+F N L+ V L++ F Q + A+AF Sbjct: 472 GELAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQ-GRRIDAVAFKKYLELME 530 Query: 547 ----RVYGTPLGEFLMQSRG--------KRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 GE L S G R+ + N ++G+K+ QL+V + + Sbjct: 531 IIEENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKKIQLKVHELRISK 589 >gi|225870751|ref|YP_002746698.1| single-stranded-DNA-specific exonuclease [Streptococcus equi subsp. equi 4047] gi|225700155|emb|CAW94297.1| putative single-stranded-DNA-specific exonuclease [Streptococcus equi subsp. equi 4047] Length = 736 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 163/592 (27%), Positives = 276/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S ++W + + Q + A+++ +R V + + FL + L DP Sbjct: 4 SKYQWTIADKEPD-AGFFKLAQAKGLSQTAAKLIYDRGVHTEEELTSFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI QAI E+I+++GDYD DG + +++ L +Y+P+R Sbjct: 62 YLLNDMEKAVHRIRQAIEGLERILVYGDYDADGMTAASIVKETLEMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G + ++A+ +A QG+DVIV DHH + +E A Sbjct: 122 DGYGPNQSVYKYFIEQEQVSLIITVDNGVSGHEAVAFAQAQGVDVIVTDHHSLPAELPDA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P L GV F + + + + LDLVA+ T+ Sbjct: 182 FAIIHPEHPAAAYPFQKLAGCGVAFKLASALLETIP-----------VDFLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L++ + E+ + + + P +NA GR Sbjct: 231 DMVSLRGENRILVKNGLAVLKETERLGLQELMKLSEVDLAHFDEDVISFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +EL LA+ + N+ R+++ + QA A + V Sbjct: 291 LDDPNPAIDLLTGFDDEELHELALMISSKNEERKVLVQEIFAQAMAMLDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E+ G+ ++ ++G GS RS+E +I + Sbjct: 345 QVLAKSGWHPGVLGIVAGRIMEEIGQTVLVLT-IDEGLAKGSARSLESINI--FEALNSN 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH AAG+T+ L + ++ I+G L+ A++I Sbjct: 402 RSLFTAFGGHEGAAGMTLPSDRLEELSELLCQYVAAKGHDGQEKNTLLINGELDLEALSI 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L P+G N PVF + ++ R + HL+ S+ + +AF Sbjct: 462 DSLNKLLLLAPFGMDNKKPVFYLKDFTIKQARTIGQQQSHLKFKV-SKGAVEADVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L + QS+G + + L +N+WRG QL ++DA F + Sbjct: 521 G--HLIQEYQQSQG--LELAVSLAINHWRGHTSLQLMLVDARVTGVQLFDIR 568 >gi|73662432|ref|YP_301213.1| single-strand DNA-specific exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494947|dbj|BAE18268.1| putative single-strand DNA-specific exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 759 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 164/580 (28%), Positives = 281/580 (48%), Gaps = 28/580 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 S + W + I +++ + IV ++L ++ ++ A D L + + +M D Sbjct: 4 SKYTWDVKSPENEITEDVSL--DLKLTPIVKKILESKEITDKAAIDQLLKN-KQVMHDAW 60 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +++D +KA RI AI ++KI+++GDYD DG S +++ L + YIP+R + Sbjct: 61 LMSDMEKAIERINLAIDQNQKILVYGDYDADGVTSTTILVETLKALGAHVGWYIPNRFSE 120 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + EG LIITVD G +D +Q + G+DVIV DHH++ A+A Sbjct: 121 GYGPNEMAFKNAHEEGISLIITVDNGIQGHDEIQMIQDLGVDVIVTDHHEIGRTMPSAFA 180 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P + +LC AGV + + + L+ L LVA+ TV D+ Sbjct: 181 IVHPMHPEFDYPFKYLCGAGVAYKLAQNL-----------LDEPPAYFLGLVAIGTVADL 229 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 V L NRA V KGL + +KA++++ + IT E +G++IGP +NA GR+ + Sbjct: 230 VSLTDENRALVQKGLEILNDHCPASIKAILKQAGYNDVITEETIGFIIGPRLNAVGRLED 289 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + LL++D+ +E E LA +++ NQ R+ + + + E+A A Q Q +++ Sbjct: 290 AALAAELLMTDNDEEAEFLAEQVEFFNQERKDIVAQITEEALAAAEDQVK--QGTKFLLL 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEG 432 WH G++G++A+++ E + P+ ++ +E GS RSIE + Sbjct: 348 AQADWHEGVLGIVASKIVETYSLPTLILNIDEAQDHAKGSARSIEQVSM--FEILNAHSD 405 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGH MAAG+T+ N L + + P K+D + + + I Sbjct: 406 LISKFGGHHMAAGITMPIENIESLRQGLNDWMAQLASTTSLEPRKKVDVKVAETDITIKN 465 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 I ++ P+G +P F + + + HL+M LQAI F G Sbjct: 466 IQDIQRLRPFGTDFSSPCFELEGVIVNQAKAIGQDKKHLKMVLGDSQ---LQAI-FWQNG 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + E Q + ++V G L +N W G + Q + D + Sbjct: 522 HLVKELGEQ---QPINVIGTLQINEWNGFQSPQFMIQDLA 558 >gi|237748453|ref|ZP_04578933.1| ssDNA exonuclease [Oxalobacter formigenes OXCC13] gi|229379815|gb|EEO29906.1| ssDNA exonuclease [Oxalobacter formigenes OXCC13] Length = 564 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 168/560 (30%), Positives = 264/560 (47%), Gaps = 25/560 (4%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + I ++AR+ R ++ L+ + M P L AA + AI KI Sbjct: 19 RTGIHPVLARIFAARGITQTEE---LSTGLSG-MISPGQLAHIGDAAGFLADAIAAGRKI 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA-QLII 154 + DYD DGA + A+ +R L N + +P+R +GYG P ++ + +I+ Sbjct: 75 TVIADYDCDGATACAVALRGLRLLGANVDYMVPNRFDNGYGLTPEIVRQAKEHHQTDIIL 134 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G S ++ A G+ V+V DHH E +VNPN+ D +L GV Sbjct: 135 TVDNGIASIKGIEEALASGMQVLVTDHHLPGDELPQNCIVVNPNQPDCSFPSKNLAGVGV 194 Query: 215 VFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +F VL+ + +R+ L LLDLVAL T DVV L NR V +GL R Sbjct: 195 MFYVLLALRAEMRRRRIFDEKTQPHLDQLLDLVALGTFADVVKLDANNRILVAQGLRRIR 254 Query: 273 RQGN-PGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 PG+ AL + + +LG+ +GP +NA GR+ + +LG LI+DD + Sbjct: 255 AGNMQPGMAALFQVSGRDFRKASPFDLGFTLGPRLNAAGRLSDMSLGIECLITDDRGKAL 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 +A +L+ +N RR +E+ M +A ++ + + I + + WH GI+G+LA+R+ Sbjct: 315 EMADELNRINVERREIEADMRIEAREQISK--IHPEDRATISILSEDWHQGIIGILASRI 372 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTV 448 KEK+ RP+ A + ++DGK GSGRSI F + + G++V+ GGHAMAAGLT+ Sbjct: 373 KEKYFRPAMAFARDKDGKIRGSGRSIPEFHLRDALDLVAKRHPGLIVQFGGHAMAAGLTL 432 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + F F+ A + + + DG L+ + I +L++ +G G P Sbjct: 433 QPDGFDVFTQAFENVAKEWLTQTQLERIIETDGSLDDDCFTLDFIGLLDT-QVWGHGFPV 491 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 PVF + + RV+ HL++ E ++ AI F T +R + Sbjct: 492 PVFCDE-FTVINQRVLKEKHLRLQLE-RNGRNYTAIQFGNNAT---------LPRRARLA 540 Query: 569 GHLCVNYWRGSKRCQLRVLD 588 L N + G QL V Sbjct: 541 YRLDANEFNGRTSVQLIVEH 560 >gi|34497930|ref|NP_902145.1| exodeoxyribonuclease VII [Chromobacterium violaceum ATCC 12472] gi|34103785|gb|AAQ60146.1| exodeoxyribonuclease VII [Chromobacterium violaceum ATCC 12472] Length = 562 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 165/570 (28%), Positives = 276/570 (48%), Gaps = 28/570 (4%) Query: 32 AITQKH---AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 + QK + + AR+ R ++ D+ ++ L+P L + + A R+ A Sbjct: 12 ELQQKLLGQGLTPLQARLYAARGIADSEELDY---GLKGLLPY-QKLKNVEAMASRLADA 67 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I +++++ DYD DGA + A+ ++ LS +P+R GYG P ++E + Sbjct: 68 IAAKQRLLVVADYDADGATACAVAVKGLSMLGAIIGFIVPNRFEYGYGLTPEIVELAAQK 127 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 +I+TVD G S ++ A +GI+V+V DHH +P +VNPN+ + Sbjct: 128 RPDIIVTVDNGIASVAGVEAAKARGIEVLVTDHHLPGDT-LPEALIVNPNQPGCEFPSKN 186 Query: 209 LCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 L GV+F VL+ + +R+ +L LLDLVAL TV DVV L NR V Sbjct: 187 LAGVGVMFYVLMALRVEMRRRGVFDEQTQPNLGVLLDLVALGTVADVVRLDRNNRTLVEN 246 Query: 267 GLMVARRQGN-PGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISD 324 GL R PG+ AL + +LG+ +GP +NA GR+ + +LG L++ Sbjct: 247 GLKRMRAGRMAPGIAALFRVAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGIACLLAS 306 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384 + ++ LA +LD LN+ RR +E+ M ++A A + D + + D WH G+VG Sbjct: 307 NEEQAMRLAQELDKLNRERRGIEAGMQDEALAALS--GIDAGNRYTLSLYRDDWHQGVVG 364 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAM 442 ++A+RLKE+F RP+ + ++G+ GSGRSI GF + + G+++K GGHAM Sbjct: 365 IVASRLKERFHRPAIVFAPGDEGEIKGSGRSIPGFHLRDALDLVYKRHPGLILKFGGHAM 424 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AAGL+++ F F+ A ++ T + + DG L A +++ L + L +A + Sbjct: 425 AAGLSLDESRFAEFQQAFEAVARELLDEKQLTRMIETDGSLPARDLSLQLAETL-AAEVW 483 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 G G P P F + + ++V HL++ +++ A+ F Sbjct: 484 GQGFPVPYFHDQ-FMVVNQKLVGDKHLKLRL-AREGCEFDAMLFNHADW---------LP 532 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 R+ L N W+G K Q+ + + Sbjct: 533 DRIQAVYQLIANEWQGRKELQVYLQHWAAA 562 >gi|322514056|ref|ZP_08067127.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus ureae ATCC 25976] gi|322120073|gb|EFX92044.1| single-stranded-DNA-specific exonuclease RecJ [Actinobacillus ureae ATCC 25976] Length = 571 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 179/562 (31%), Positives = 276/562 (49%), Gaps = 19/562 (3%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 K + ++ R+ +R ++ L ++ + P L + D A +++A +I Sbjct: 15 KLSDHPLLNRLYQSRGIASPQE---LERTL-QFLHRPNQLANIDAAVELLIEAYKQQSRI 70 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 +I GD+D DGA S AL + L N + IPDR GYG + ++ E + +G +++ Sbjct: 71 IIVGDFDADGATSTALALLALGQLGFENVDYLIPDRFSQGYGLSLAVAEMVLVKGTDVVM 130 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S++ + GI V+V DHH A A+VNPN D L GV Sbjct: 131 TVDNGISSFEGIDLLKEHGIKVLVTDHHLPAESLPNADAMVNPNLADCSFPSKSLAGVGV 190 Query: 215 VFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 F +++ + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 191 AFYIMLALRGKMRELGCFKEKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLNRIRS 250 Query: 274 -QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + Sbjct: 251 GHCRAGIRALAEVSKRDLSSLQASDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQ 310 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAAR 389 LA +LD LNQ R+ E M +A A +QA IV+ WH G++G+LA+R Sbjct: 311 LAFELDSLNQTRKEFEQEMKTEALAICANLPSLMQKEQAHGIVLYQPDWHQGVIGILASR 370 Query: 390 LKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAG 445 +KE+F RP + E + GS RSI G + ++ +++K GGHAMAAG Sbjct: 371 IKEQFHRPVIVFAQESENSEYLKGSARSIAGLHMRDLLERIDSLYPDLIIKFGGHAMAAG 430 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ + NF R F + + I+ V DG L S +NI + ++L+ AGP+G Sbjct: 431 LTIHQENFLRFQKVFDEIINEIIEPEQLQGVIYTDGELAPSELNIEIAELLQQAGPWGQN 490 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P F +L R++ HL++ E + AI F + + K++ Sbjct: 491 FPEPTFEGE-FRLLQQRILGGKHLKLMVEQPNGGLFDAIWFNADLRYFPDLSI----KQV 545 Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587 + L +N +RG+K QLRV Sbjct: 546 KLVYKLDINEFRGNKNLQLRVD 567 >gi|331003335|ref|ZP_08326838.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae oral taxon 107 str. F0167] gi|330412605|gb|EGG91990.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae oral taxon 107 str. F0167] Length = 572 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 158/580 (27%), Positives = 286/580 (49%), Gaps = 25/580 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + I+ + I ++AR+++NR++ + FL ++ LM + LT Sbjct: 4 KWMLYTKRAEF---EKISARFNISPVLARIIINRDIKEEDFSIFLQNDLK-LMHNAGGLT 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +KA I++ I + KI + GDYD+DG S ++++ L + N ++ IPDRI DGYG Sbjct: 60 GIEKAYEIIMEEIESGRKIRVVGDYDIDGVCSSYILVKALKYFGANVDVKIPDRIKDGYG 119 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA----- 191 N +++ N+G +IIT D G ++ ++ A GI VI+ DHH+V E+ Sbjct: 120 INDNIINDAANDGVSMIITCDNGIAAHSQMELAKRLGIKVIITDHHEVYQEDGKDLLPVA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 ++NP R D +C V + ++ IY L + L LL++ A+AT+ Sbjct: 180 NVVINPKRSDCDYPFKSICGGLVAYKLMEYIYERLYSKKIY-DDEKLTDLLEVAAIATIG 238 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 DV+PL+ NR V GL N GL+ALI+ + +TA ++G+++GP +NAGGR Sbjct: 239 DVMPLVDENRILVKNGLKSLMHTKNLGLQALIKVTGMEGKKLTAYSIGFVLGPCLNAGGR 298 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + + + +++ +E A L LN R+ + +++A + D + Sbjct: 299 LENALIALNMFMAESEEEAMEYASHLKELNDERKDLTLKNVKRAIEIAENEYSDND---I 355 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVSFA 428 +V+ D H I G++A R++E G+P+ + +F E+G GSGRSIE +++ + Sbjct: 356 LVIYLDDCHESIAGIIAGRVREAVGKPTIILTEAFGEEGMIKGSGRSIESYNM--FEALY 413 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + I VK GGH MAAG+++++ + + + ++ + A ID L S + Sbjct: 414 EVKDIFVKFGGHHMAAGMSLKKERLDKFRERLNE--NSKLCAEDFVQKIWIDIALPFSYL 471 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546 ++ + L+ P+G N P FA + K+ S ++ ++M E D ++AI F Sbjct: 472 SLDFVRELDKLEPFGNKNEKPKFARKDIKIISKTILGKNKNVVKMVLEDVDKTAVEAIYF 531 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 F K + + + +N + G + Q+ + Sbjct: 532 GDGEEF---FKSIQDKKTIDIIYYPDINEYGGRESLQIVI 568 >gi|262370873|ref|ZP_06064197.1| ssDNA exonuclease [Acinetobacter johnsonii SH046] gi|262314235|gb|EEY95278.1| ssDNA exonuclease [Acinetobacter johnsonii SH046] Length = 568 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 173/560 (30%), Positives = 270/560 (48%), Gaps = 20/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP +A +L R V+ + + P L ++A + + AI KI+I Sbjct: 20 DIPAFIAEILARRGVASTQELE----LKLKHLLAPS-LKGLNEAVQLMDAAIDQQHKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L +PDR GYG P++ + F + L+ITV Sbjct: 75 VGDYDADGATSTALMILALREMGAQVEYLVPDRFKYGYGLTPAIADLAFTSFTPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+D ++ A + G+ VI+ DHH A A+VNPN+L L GV F Sbjct: 135 DNGISSHDGVKQAQDHGMQVIITDHHLTTKPTPSAQAVVNPNQLGCDFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-G 275 VL + ++ N + + LDLVAL T DV L NR V GL ++ Sbjct: 195 YVLANLSTYRKKLN--KSSAVMSQYLDLVALGTYADVASLDYNNRILVDVGLKRIQQHLC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL+E + + A++LG+++GP INA GR+ ++G L++ D LA Sbjct: 253 RPGISALLEIAGREAASLKAQDLGFVLGPRINAAGRMETMDIGIECLLAQDFASAYPLAE 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E+ M ++A + Q DD + +++ WH G++G++A RLKE+ Sbjct: 313 QLNQLNVERRQVEATMKQEALIALDQIQLDDTVLPAALIMFEPHWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + +EDG GS RSIEG I + ++ GGHA AAGLT+++ Sbjct: 373 FHRPSIVFAADEDGVHIKGSARSIEGVHIRDAIECVAEQYPHLVSHFGGHAAAAGLTIQK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 V+F F+ + T DG L A + + +D+L+ P+G P P+ Sbjct: 433 VHFEEFKQAFEVLMAAQ-DEGLFTATLWTDGELAAENIQVETVDLLQQISPWGQKFPAPI 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F N ++ R + HL++ + + + AIAF ++ ++ + Sbjct: 492 FEG-NFQILDFRWLKEVHLKLRIALDNGQVVDAIAFNAAD----KYQFNEMNHQIRLVYE 546 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L N +RG+ QLR+L Sbjct: 547 LDKNEFRGNVSVQLRILHLE 566 >gi|309803977|ref|ZP_07698060.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 11V1-d] gi|308163979|gb|EFO66243.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 11V1-d] Length = 761 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 163/573 (28%), Positives = 280/573 (48%), Gaps = 30/573 (5%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80 ++ + + K+ + I A++ R ++ D DF LN L DP ++ D +K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMEK 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 63 IVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GG Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A GL++++ + +L + F+ + + + D LN + + + + Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKV 465 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 GP+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518 Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|182415274|ref|YP_001820340.1| single-stranded-DNA-specific exonuclease RecJ [Opitutus terrae PB90-1] gi|177842488|gb|ACB76740.1| single-stranded-DNA-specific exonuclease RecJ [Opitutus terrae PB90-1] Length = 573 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 176/587 (29%), Positives = 281/587 (47%), Gaps = 24/587 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW A+++ + ++A +L+ + FL P++ L DP +L Sbjct: 2 RWTHTPVP--TEEIEALSKGAGVSRVLAELLLRAGLRDAGGCATFLAPALAALQ-DPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + D AA R+ QAI N E +++ GDYDVDG +S AL++ L + +P R DGY Sbjct: 59 RNVDAAATRLRQAIANQESVVVLGDYDVDGVSSTALLVSVLRRFGLLPRFVVPRRSEDGY 118 Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G + S +++ + L + +DCG+ S+D + Y QGIDVIV+DHH+ K + + Sbjct: 119 GLSRSAIDRALEGGRPHLFVVLDCGTNSHDEVAYLREQGIDVIVLDHHRSKERALDGMLI 178 Query: 195 VNPNRLDD---LSGQGHLCAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATV 250 DD HLC G+VF + + + LR +N V L LDLVAL TV Sbjct: 179 NPHVHRDDTGADGPWRHLCTVGLVFKLAHGLLKQLRAENHPVAFRIKLRDHLDLVALGTV 238 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAG 308 D+VPL+G NR GL + + PGL+AL+E + I ++ + +GP INA Sbjct: 239 ADLVPLLGENRILARHGLTILQESRRPGLRALMEVAGVKPENGINPVDISFRLGPRINAS 298 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ ++ L LL+S+D + A +LD N+ R+ +E + E+AE + T D + Sbjct: 299 GRLADAALSVELLLSEDLAFCQQTAQQLDAFNRERQEIERKITEEAEQLIETHYAD---S 355 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 IV+ + WHPG+VG++A R+ K+ RP + E + GSGRSI+G ++ +++ Sbjct: 356 PGIVLFSEDWHPGVVGIVAGRVTRKYNRPCVVLGNEGE-FAKGSGRSIDGLNLVEVLGTC 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 LV GGH MA G+ + + + + F I ++ L + Sbjct: 415 C--DHLVSWGGHPMAVGIALRKEHLPVFREQFAAAVRTQAGDAIAEARLELAAWLTPEQI 472 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFR 547 L+D LE P+G GN P F L++ + H + FE Q L +A++ Sbjct: 473 TPRLMDELEQLHPFGQGNAEPRFGVRGVVLRTAPEIFKTFHFRFNFEDQRGRRLHGVAWK 532 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + L G + + L N++ K QL ++D P G Sbjct: 533 MASRLLP------VGVPVDLAVELKWNHFNDRKFLQLCLVDWRPSAG 573 >gi|160934228|ref|ZP_02081615.1| hypothetical protein CLOLEP_03099 [Clostridium leptum DSM 753] gi|156866901|gb|EDO60273.1| hypothetical protein CLOLEP_03099 [Clostridium leptum DSM 753] Length = 710 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 180/579 (31%), Positives = 281/579 (48%), Gaps = 23/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +WV+ + I A I Q + + ++ +LV R S + + FLN DP + Sbjct: 22 KQWVTAPLDKEI--AKTIAQTYGLSQFLSMMLVIRGFHSKEQIESFLNT--PDSCFDPFL 77 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D A RI QA+ EKI I+GDYD DG S +L+ +L + YIP+R +G Sbjct: 78 LKDMDLAVERIHQALDQFEKICIYGDYDADGVTSTSLLYSYLESLGADVMYYIPERESEG 137 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYA 193 YG N + K G +LIITVD G + ++YA + ID +V DHH Q PA A Sbjct: 138 YGMNIDAVRKLSELGVRLIITVDNGIAAAREVEYANSLHIDTVVTDHHQQQGDILPPAVA 197 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P+RLD ++ GV F ++ + +D L + DL A+ T+ D+ Sbjct: 198 VVDPHRLDCDCPFKNMAGVGVTFQLISALE---GKDGGFST--LLENYSDLAAIGTIGDI 252 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VPL NR V GL R G++ALI + +T+ + + + P INA GR+G Sbjct: 253 VPLEKDNRVLVKHGLAQLSRTDRLGIQALITESGLEGKKLTSTAVAFSLVPRINAAGRLG 312 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 S +LL+S+ E E LA ++ NQ R+ +E + Q E + + + ++V Sbjct: 313 SSRQAVKLLLSEYPDEAEDLAREIGEQNQQRQKIEGDIALQIEEYLQAH-PERRFDRILV 371 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V+G+ WH G+VG++A+R+ EK+G+P IS E + GSGRS+EGF + V E Sbjct: 372 VDGENWHAGVVGIVASRVVEKYGKPCVVISREGE-LSRGSGRSVEGFSLSDAVYACREH- 429 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 LV+ GGH MAAG+T++ +A P + P +D L +++ + Sbjct: 430 -LVRFGGHPMAAGITIKTDKIDDFRLAINAYAAQRHP-QMPYPKLLLDCKLRPQVLSLDI 487 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGT 551 ++ L P+G GNP P+F + L I HL++ F+ ++ + A+ F V Sbjct: 488 VEELTLLEPFGTGNPAPLFGLYSMTLTGITPCGNRKHLRLAFQ-REKVKITAMRFSVT-- 544 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 E G + + L N +RG + + D Sbjct: 545 --PEEFPYQPGDILDLAVTLERNEYRGEASLSIHIRDLK 581 >gi|325262047|ref|ZP_08128785.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. D5] gi|324033501|gb|EGB94778.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. D5] Length = 570 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 184/584 (31%), Positives = 302/584 (51%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W + + N I K+ I I+AR++ NR++ D + +LN +I L D +++ Sbjct: 3 KWFVCMKKADFN---GIADKYHISPILARLIRNRDMMEDGEIEFYLNGTIADLY-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I + I + GDYD+DG + ++ +S + IPDRI DGY Sbjct: 59 MDMDKAVEILAEKIRGGDAIRVIGDYDIDGVNATYVLQEGISRLGGVVDTDIPDRIRDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N L+++ + +G IIT D G + D + Y QG+ +IV DHH+V + Sbjct: 119 GLNRMLIDRALEDGIDTIITCDNGIAASDEIAYGKQQGLTIIVTDHHEVPYLDAGGEKEY 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+V+P+R D LC A V + ++ +Y ++++D D+ L++ VA Sbjct: 179 LLPPADAVVDPHRPDCEYPFKGLCGAAVAYKLVEALYEVMQKD-----VDDIDYLMENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ L G NR +V +GL + +R GNPGLKALIE + ++A ++G+++GP I Sbjct: 234 IATVGDVMDLQGENRIFVKQGLEMLKRTGNPGLKALIECTGVPVDRLSAYHIGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + +E MLA L LN +R+ M +EQA ++ + + Sbjct: 294 NASGRLDTAKRALELLNAPSRREAVMLAEDLKALNDSRKEMTEKGVEQAVDQI--ENTSL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+VV H I G++A R+KE++ RP+F ++ E+G GSGRSIE +++ Sbjct: 352 KEDKVLVVYLPECHESIAGIIAGRIKERYYRPTFVLTQGEEGV-KGSGRSIESYNM--FE 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + K GGH +AAGL++E N R + + A ++ P ID L Sbjct: 409 EMCRCRALFTKFGGHKLAAGLSLEEDNVDRFRETINELA--VLSEEDLLPKVSIDMQLPL 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 + V AL+ LE P+G GN P+FA N K+ R++ L+ + + ++A Sbjct: 467 AYVTEALVSELEILEPFGKGNTKPLFAEKNLKVLRPRIIGKNQNVLKFQVQDKRGNQMEA 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 I F + L + + M T + VN + G + Q+ V+ Sbjct: 527 IYFGDAASCLEYI---RQKEEMSFTFYPSVNEYMGKRTLQITVV 567 >gi|329896804|ref|ZP_08271720.1| Single-stranded-DNA-specific exonuclease recJ [gamma proteobacterium IMCC3088] gi|328921559|gb|EGG28939.1| Single-stranded-DNA-specific exonuclease recJ [gamma proteobacterium IMCC3088] Length = 581 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 182/564 (32%), Positives = 274/564 (48%), Gaps = 21/564 (3%) Query: 42 IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 + AR+L +R V L+ L+P P L AA I A+ +++I++ GD+ Sbjct: 24 LFARILASRGVCSSDE---LDLGFGGLLP-PSGLLGARDAAALIASAMSRNQRILVVGDF 79 Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 D DGA SV L + + +P+R GYG P ++E LI+TVD G Sbjct: 80 DADGATSVTLFVSCMRAFGYEVQYLVPNRFDYGYGLTPEIVEVATQYAPDLIVTVDNGIA 139 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 S+ + A +G V+V DHH A +VNPN+ D L GV+F VL+ Sbjct: 140 SHAGIDLAKAKGWQVLVTDHHLPAETLPNADVIVNPNQPDCAFQSKALAGVGVIFYVLLA 199 Query: 222 IYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ-GN 276 + LR +L LDLVAL +V DVVPL NR V +GL R Sbjct: 200 LRAFLRDQGWFEAKGIVEPNLAEFLDLVALGSVADVVPLDRNNRILVEQGLRRMRSGIMR 259 Query: 277 PGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 PG++AL+E N S + A++LG+ +GP INA GR+ + ++G R L+S D E LA + Sbjct: 260 PGIQALLEVANKSWRTLVAQDLGFALGPRINAAGRLDDISVGIRCLLSRDLFEARELANR 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 LD N+ RRL+E M A+ + + + + I + WH G+VG+LA+R+KE+ Sbjct: 320 LDEFNRERRLIEQTMKADAQVLLAQLPAFEAGKLPAAITLYDASWHQGVVGILASRIKEQ 379 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVERV 451 + RP + + + GS RSIEG I ++ + G++ K GGHAMAAGLT+ Sbjct: 380 YHRPVIVFANDGEQYLKGSARSIEGVHIRDVLDSIATMNPGLISKFGGHAMAAGLTIPAS 439 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 F + P + PV DG L+ S ++++ L P+G P P+F Sbjct: 440 ALEAFGQALDNFLEDNTPPELFYPVKLSDGALSESEFSLSVAQELRVLQPWGQQFPEPLF 499 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 ++ +R+++ H +M E S L AIAF V +F + G+ + Sbjct: 500 DNE-FRIVELRILSGQHAKMRLELASSNAMLDAIAFNVD----VDFYQANLGQTLRFLYR 554 Query: 571 LCVNYWRGSKRCQLRVLDA-SPVE 593 L VN +RG + QL + A P+E Sbjct: 555 LDVNEFRGLESLQLIIEYAERPLE 578 >gi|292670700|ref|ZP_06604126.1| recombination protein J [Selenomonas noxia ATCC 43541] gi|292647646|gb|EFF65618.1| recombination protein J [Selenomonas noxia ATCC 43541] Length = 659 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 290/582 (49%), Gaps = 28/582 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ + + ++ I I+ ++L +R + S D A+ FL+P DP + Sbjct: 3 KEWIVHK---ECAEGIELARELGISPIIGQILWHRGIGSADAARAFLHPE-NEAFRDPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +KAA+RI+ A++ EKI+++GDYDVDG S A++M+ + + + YIP+R +G Sbjct: 59 MKDMEKAAQRILSAVHRGEKIVVYGDYDVDGMTSTAILMKNIHALGGDVSYYIPNRFTEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +++ EG L++TVDCG +S +Q +D+IV DHH E A A+ Sbjct: 119 YGINLAALQQIAAEGCGLLVTVDCGISSVQPIQEIHGA-MDIIVTDHHLPGRELPAALAV 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP+R D L GV F ++ + + +D+ AL T+ D+V Sbjct: 178 VNPHRADCSYPDKDLAGVGVAFKLVQAM-------QMIEKQRVWEDDMDIAALGTISDLV 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL+G NR V GL G++ALI + I +G+ +GP +NA GRI Sbjct: 231 PLVGENRRIVRLGLARMSENPCWGVRALIMAAGLEGKKINTGMVGFQLGPRMNAAGRIET 290 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G LL+S+D+QE E +A +L+ LN RR +E +L +AEA ++ Q I+ Sbjct: 291 ARRGVDLLLSEDAQEAECIAGELNALNAERRSLEQDILAEAEAMLVDFT---QDTPAIIA 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ G++G++A+RL E++ RPS ++ + D GS RSI G + K + E Sbjct: 348 AGEDWNAGVIGIVASRLVERYYRPSIVLTRQGD-VYKGSCRSIAGLHMYKALEACRE--T 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGH MAAGL+V F + + P +I+ ++ + + ++ Sbjct: 405 LIQFGGHEMAAGLSVASAQLEEFRMAFSNYVRTHLMPADFIPKTQIEALVAPADWTLEMV 464 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + LE PYG GNP P+F + QS + HL+M ++++ + A+ + Sbjct: 465 EELELLEPYGMGNPRPIFGVRAIRPQSASAIGAEGKHLRMEIGTRENH-VAALCWNAGE- 522 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L E L + + +N W+G + Q P E Sbjct: 523 -LAEILTEEDS---DLAYTPSINEWQGIRSVQCMAESVMPAE 560 >gi|17545834|ref|NP_519236.1| single-stranded-DNA-specific exonuclease [Ralstonia solanacearum GMI1000] gi|17428128|emb|CAD14817.1| probable single-stranded-dna-specific exonuclease protein [Ralstonia solanacearum GMI1000] Length = 565 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 175/574 (30%), Positives = 269/574 (46%), Gaps = 24/574 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 ++ H I I+AR+L R V+ L+ + L+P P L D AAR Sbjct: 8 PHSAETASLLAGHGIHPILARILAARGVARP---SELSTELTDLLP-PAQLKGIDDAARY 63 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + AI ++++I DYD DGA + A+ +R L +P+R GYG +P ++ Sbjct: 64 LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 E +++TVD G + A GIDV+V DHH ++ A +VNPN+ Sbjct: 124 AARERPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262 HL GV+F VL+ + LR L +LLDLVAL TV DVV L NR Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRNRGAFTPQNQPRLDALLDLVALGTVADVVRLDANNRL 243 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R + G+ AL + + +LG+ +GP +NA GR+ + +LG Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC--DDIQQASVIVVEGDRW 378 L++DD +A +LD +N+ RR +E+ M ++A A + + D I V + W Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILASTLAGMDGAGRHTIAVYNETW 363 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436 H G++G++A+RLK+KF RP + +DG GSGRSI GF + + G++VK Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAGL++ F R + F+ + + + V + DG A +++L Sbjct: 424 FGGHAMAAGLSLHADGFDRFVETFEAVGREWLDESLLSRVLETDGEAEAECFTPQFVELL 483 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 E+ +G G P P F + S V+ HL++ + + AI F Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFDAIWFNHAE------ 534 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G +V L N + G R Q+ + A Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565 >gi|242280277|ref|YP_002992406.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio salexigens DSM 2638] gi|242123171|gb|ACS80867.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio salexigens DSM 2638] Length = 577 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 281/583 (48%), Gaps = 24/583 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W +E + AI + I +++A +L NR S + FL+P +R L P Sbjct: 3 KIWKLRSEEELPSSIPAIADELGITELLAEILWNRGFQSREDMDLFLSPGLRNLCQ-PKE 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + AA+ + + +K+ ++GDYDVDG S A++ FL+ + Y+P+R+ +G Sbjct: 62 IPGLELAAQVLADGLAVGKKMAVWGDYDVDGVTSTAVVKTFLADRGYECDHYLPNRLEEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++K +G L++TVDCG T+ + A G+ V+V DHH E PA A+ Sbjct: 122 YGLNVDGIKKLHEQGIDLLLTVDCGITNNAEIAAANELGMTVVVSDHHLPGDELPPAAAI 181 Query: 195 VNPNRLDDLSGQGHLC------AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 NP + C GV F+++ + R+L D D+ + LD VAL Sbjct: 182 CNPRLTEYNGQNFENCPCATLAGVGVAFMLMAQLNRLLPGD-----PADVRAYLDFVALG 236 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSIN 306 T+ DVV L G NR V GL++ + PGL AL I A +G+ + P IN Sbjct: 237 TIADVVELQGQNRILVKNGLLLLKEAKRPGLAALKVVSGYDMFAAIGAGQVGFGLAPRIN 296 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+G+ +LL+++D + +A LD LN RR E +L++A A+ + Sbjct: 297 ASGRMGDPGRALQLLMAEDMETARPIAKVLDELNTERRAEEDRILQEAIAQA-EEHIKRD 355 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + +V+ WHPGI+G++A+R+ EKF RP+ + EEDG GS RSI+ F I Sbjct: 356 NRAGLVLYSKSWHPGIIGIVASRVVEKFYRPTVML-CEEDGVVKGSARSIKEFHIH--EG 412 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 + + GGH +AAG++ + + F + + + + K+D L Sbjct: 413 LTSMSELFLNFGGHKLAAGMSFKAELLSEFRERFDQAVIDKIGSEPLKASLKVDRELPLE 472 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIA 545 ++ L+ LE P+G GNP PVF P ++ R + AH+++T + + + A A Sbjct: 473 NIDYVLLKELELMQPFGMGNPEPVFTTPPVEVLERRPMGKAHVKLTVTDLEKTRKMPAKA 532 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 +R+ E + G M ++ + G +L + D Sbjct: 533 WRMAEELGSELI----GSTMRFAFSPKIDKFNGIPTIELTIRD 571 >gi|300114432|ref|YP_003761007.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus watsonii C-113] gi|299540369|gb|ADJ28686.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus watsonii C-113] Length = 574 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 171/567 (30%), Positives = 270/567 (47%), Gaps = 25/567 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I ++ RV R + A D L+ ++ L P P +L++ A + +A+ +I++ Sbjct: 20 IHPVLRRVYGARGI---KAPDELDYTLERL-PSPWLLSNIKTAVTLLRKALARDWRILVV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITV 156 D+D DGA S A+ +R L + +P+R + GYG P+++ E LIITV Sbjct: 76 ADFDADGATSCAVAVRALRLMGAHKVDYLVPNRFIHGYGLTPAIVAEAVAQGQPDLIITV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D +Q A I V++ DHH + A A+VNPN +D L GV+F Sbjct: 136 DNGISSLDGVQAARAANIRVLITDHHLPGASLPAANAIVNPNLPNDPFPSSCLAGVGVIF 195 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + LR+ L LLDLVAL TV DVVPL +NR V +GL R Sbjct: 196 YVMLALRAHLREQGWFAHRDEQEPALAPLLDLVALGTVADVVPLDQINRILVAQGLARIR 255 Query: 273 RQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + + +LG+ +GP +NA GR+ + +LG L++D + + Sbjct: 256 QSRCCAGIQALVACARRPLETLATSDLGFAVGPRLNAAGRLEDMSLGIACLLTDSLELAQ 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD--DIQQASVIVVEGDRWHPGIVGLLAA 388 A +LD LN+ RR +ES M QA + + ++ + + WH G++GLLAA Sbjct: 316 QQANQLDRLNRERREIESTMQAQAVTHLENLVFQGEEKEPLGYCLFDECWHQGVIGLLAA 375 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R++E+ RP A + + + GS RSI G I + +L K GGHAMAAGL Sbjct: 376 RIRERVYRPVIAFAPHDSEELKGSARSIPGLHIRDALDRVATCYPDLLTKFGGHAMAAGL 435 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++ R + F + ++ V DG N ++ + + L GP+G G Sbjct: 436 SLRRGHLEPFRVAFLEVLETLLDKEALEDVILSDG--NLEQWDLEMAETLRDGGPWGQGF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P+F ++ R+V AHL++ + D + L+ IAFR + G ++ Sbjct: 494 PEPLFDG-VFRVAGFRIVGEAHLKLMLATLDGQQQLEGIAFRCLPPD-----GFAPGVKI 547 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L VN +RGS+ QL V + Sbjct: 548 RLAYRLDVNIYRGSRTAQLMVEHLEVI 574 >gi|260437938|ref|ZP_05791754.1| single-stranded-DNA-specific exonuclease RecJ [Butyrivibrio crossotus DSM 2876] gi|292809689|gb|EFF68894.1| single-stranded-DNA-specific exonuclease RecJ [Butyrivibrio crossotus DSM 2876] Length = 573 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 177/584 (30%), Positives = 290/584 (49%), Gaps = 34/584 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 W + + AI +K+ I ++ARV+ NR++ D A D +LN S+ M DP++ Sbjct: 2 QEWRIYSKKADFS---AIGKKYGIDQVIARVIRNRDIEGDAAMDSYLNGSVDS-MYDPML 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA ++ I N KI I GDYD+DG S+ ++ + L + + +PDRI DG Sbjct: 58 MKDMGKAVDILLDTIKNKRKIRIIGDYDIDGICSIYILFKGLLFLGADVDYEVPDRIKDG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------ 188 YG N +L+++ ++G ++I+T D G + + ++YA + G VIV DHH ++ EE Sbjct: 118 YGINENLIKQAYDDGREVILTCDNGIAATEQVRYARSLGFTVIVTDHHDIRYEEIDGKKT 177 Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A A+VNP + D LC AGV + ++ +++ + K L Sbjct: 178 YILPEADAIVNPKQSDCSYPCSFLCGAGVAYKLMQELFKRTGNEGKE------REFLVFA 231 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 +ATV DVV L NR +V +GL + N GL+AL I A ++G++IGP Sbjct: 232 GIATVGDVVDLKDENRIFVKEGLKQFKETDNYGLRALTVINGLDDKEICAYHIGFIIGPC 291 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GR+ + ++L+S D E E LA L LN+ R+ + +A + AE V D Sbjct: 292 LNASGRLDTAKRALKMLLSKDKYEAERLAGDLVSLNEERKSLTAAAVILAEKIVDENYTD 351 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 +V+V+ H I G++A R++EK+ +P ++ EDG GS RSIE ++I Sbjct: 352 ---DTVLVIYLPDCHESIAGIVAGRIREKYYKPVIVLTKGEDGV-KGSARSIESYNI--F 405 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +L K GGH +AAG++++ N L + + H+ + T ID + Sbjct: 406 EKLCECSHLLTKFGGHPLAAGMSLKEENIEELRKYLNE--HSNLTKDDLTEKVWIDVPMP 463 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQ 542 +N +I+ L PYG GN PVFA N + S + +M + + ++ Sbjct: 464 LEYINEDIINELSLLEPYGKGNEKPVFADKNLIIVSFMRIGRDGKFAKMELKKNNGMSIF 523 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 A+ F F+ KR+ T + +N +RG+K+ Q+ + Sbjct: 524 AMCFNNCDGLNEAFI---NNKRISCTYYPEINEFRGNKKLQICI 564 >gi|331090636|ref|ZP_08339487.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 2_1_46FAA] gi|330401076|gb|EGG80671.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 2_1_46FAA] Length = 571 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 299/584 (51%), Gaps = 31/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W I+QK I ++AR++ NR++ D + +LN ++ L D +++ Sbjct: 3 KWFLTRKGADFQ---KISQKFHINPVIARLIRNRDIVGDDEIQFYLNGNVENLY-DGILM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A I + I + I I GDYD+DG + +++ + + ++ IPDR+ DGY Sbjct: 59 KDMSVAVDIIREKIQERKSIRIIGDYDIDGINATYILLEGIEKLGGDVSVDIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N +L+++ +G IIT D G + + Y + G+ ++V DHH+V EE Sbjct: 119 GLNKTLIDRAFEDGVDTIITCDNGIAAGGEIAYGKSLGMTIVVTDHHEVPYEETEEGIRY 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+++P R D HLC AGV + ++ ++ + +D ++ L++ VA Sbjct: 179 LLPHADAVIDPKREDCEYPFPHLCGAGVAYKLVETLFNVEGRD-----AGEIEYLIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ LIG NR +V GL ++ N GLK+LIE + +++ ++G++IGP + Sbjct: 234 IATVGDVMDLIGENRIFVKYGLEKIKKTKNLGLKSLIECTGVEVDRLSSYHIGFVIGPCL 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + + ++LA L LN +R+ M + +E+A +V + + Sbjct: 294 NASGRLDTAKRALELLRAKTKADADILAGDLKALNDSRKEMTAEAVEEAVEQV--ENTSL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ +V+V+ H + G++A R++EK+ RP+F ++ E+G GSGRSI+ + + + + Sbjct: 352 KEDTVLVIYLPDCHESLAGIVAGRIREKYHRPTFVLTNAEEG-AKGSGRSIDAYHMYEEM 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + +L K GGH +A GL++ N + + ID L Sbjct: 411 NKC--KDLLEKFGGHKLAGGLSIPIENIDLFRKRLNENCE--LSEDELYEKVSIDMQLPL 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 S V+ LI+ LE P+G GNP PVFA + +++ R++ L++ ++ Sbjct: 467 SYVSETLIEELECLEPFGKGNPKPVFAEKDIQIRGTRILGKNKNVLKLQLSDMYGTEMEG 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F G + ++++ ++++T + VN + G K Q+ + Sbjct: 527 MYFGDVGRVMD--TIENKNGKINITYYPTVNEYMGRKTLQIVIQ 568 >gi|168333635|ref|ZP_02691895.1| single-stranded-DNA-specific exonuclease RecJ [Epulopiscium sp. 'N.t. morphotype B'] Length = 679 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 173/580 (29%), Positives = 282/580 (48%), Gaps = 31/580 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 + + W L + I+ +L +N+ + FLNP I L DP Sbjct: 4 NNYEWKFLSNNPNKS-------------IIDNILAAKNILDSDKESFLNPKIADLH-DPF 49 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L D DKA RI+ AI ++I I+GDYD DG S +++ FL+ N YIP+R + Sbjct: 50 ALLDMDKAVIRILDAISQKQQITIYGDYDADGITSTSVLYMFLTEVGAKVNYYIPNRFTE 109 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N + + LI+TVD G T+ + +A ++GIDVI+ DHHQ + A+ Sbjct: 110 GYGMNIDAILYLADNKTDLIVTVDNGITAIAEVDFARSKGIDVIITDHHQCLDQIPDAHC 169 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +VN R + +L G+VF ++ I L+ L + LDLV++ T+ D+ Sbjct: 170 IVNYKRPNCTYPSQNLAGVGIVFKLITAIATTLKLS----LEEYVYKYLDLVSIGTIADM 225 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VPL+ +R GL + NPGL+AL+ +N + PIT+ + + + P INA R+ Sbjct: 226 VPLLQESRVIASLGLKLITHTRNPGLRALLNIINKNSQPITSYTIAFQVAPRINAISRMS 285 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL L + D+Q LA LD N R+ E+ ++ A + + D+ + V+V Sbjct: 286 DANLAIELFTTQDTQRAATLAQLLDNNNIKRKAKEAEIV-TAAFEYVKNNIDLSKEKVLV 344 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + G WH G++GL+A+++ + + RP+ + + K +GS RSI+GF I ++ ++ Sbjct: 345 ITGTDWHHGVLGLVASKISQHYYRPTIVCT-LDGDKYVGSARSIDGFSIINAITE--QQQ 401 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 L+K GGH AAGLT+ + K + I+ + TP ID + S V I L Sbjct: 402 YLIKYGGHTQAAGLTISASKIRNFTEDINKANYEILDKQLLTPKIYIDATVPLSEVTIDL 461 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + L + P G N +P+ K+ I + HL++ E +++ L I F Sbjct: 462 YNSLSALEPCGQNNSSPILLVKG-KISKIIHMGKRSEHLKIILED-NNKFLDVIIF--SQ 517 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L FL ++G+ + + G + N W G Q + Sbjct: 518 GQLSNFL--NKGEEVEIAGSISKNEWNGKTTIQFMMTAIR 555 >gi|288924942|ref|ZP_06418878.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae D17] gi|288338132|gb|EFC76482.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae D17] Length = 507 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 153/514 (29%), Positives = 257/514 (50%), Gaps = 14/514 (2%) Query: 16 FRWVSLLGQEGINRAL-AITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F+W +A + +K + +A++L+ R ++ + AK F P + L+ +P Sbjct: 3 FKWNYQTPTPDERQAADELGEKLNMSPTLAQLLIRRGITTESAAKRFFRPQLADLI-NPF 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D D A R+ A+ E+I+++GDYDVDG +VAL+ +FL N YIPDR + Sbjct: 62 LMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIGYYIPDRYDE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG + ++ G +LII +DCG + + + YA + GID I+ DHH PA A Sbjct: 122 GYGVSKKGIDYAKETGVKLIIILDCGIKAVEEITYAKSLGIDFIICDHHVPDEVMPPAVA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R DD HLC GV F + + N L+ LLD +A D+ Sbjct: 182 ILNPKRPDDSYPFKHLCGCGVGFKFMQGFAK-----NNDIAFSRLIPLLDFCTVAIAADI 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 VP++ NR GL + + GLK++I+ ++ I+ ++ + IGP INA GR+ Sbjct: 237 VPVMDENRILAFHGLKQLNQNPSIGLKSIIDICGLNGREISMSDIVFKIGPRINASGRME 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ + +A ++ N+ R+ ++ M E+A +++++ + + S IV Sbjct: 297 NGRESVDLLVEREFPVALRMATHINEYNEQRKDIDKQMTEEA-NQIVSRLESQRHRSSIV 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W G++G++A+RL E + RP+ ++ + GS RS+ GFD+ + Sbjct: 356 LYDENWKKGVIGIVASRLTEIYFRPTVVLT-RDGDMATGSARSVTGFDVYSAIKSC--RD 412 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+ GGH AAGLT++ + D FQKF + T ID +++ +N L Sbjct: 413 ILINFGGHTYAAGLTMKWEHVKEFRDRFQKFVEEHIEPEQTEATLNIDAMIDFKDINKRL 472 Query: 493 IDMLESAGPYGAGNPNPVFAFPNH-KLQSIRVVN 525 L+ P+G GN P+F + +VV Sbjct: 473 HTDLKRFAPFGPGNSKPLFCTCGVYDYGTSKVVG 506 >gi|70726286|ref|YP_253200.1| hypothetical protein SH1285 [Staphylococcus haemolyticus JCSC1435] gi|68447010|dbj|BAE04594.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 757 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 151/581 (25%), Positives = 288/581 (49%), Gaps = 30/581 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72 S + W+ E IN + +K+ + I+ ++L +++++ D K L+ +I DP Sbjct: 4 SKYNWLYEPPTEYIN--ETLIKKYQLTPIIKKLLESKSITDDESIKALLDETIIN--HDP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D +KA RI +AI +E+I+++GDYD DG S ++++ L YIP+R Sbjct: 60 WLLSDMEKAVTRINEAIDKNERILVYGDYDADGVTSTTILVKTLQTLGAEVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN +EG LIITVD G + ++ G+DVIV DHH++ AY Sbjct: 120 EGYGPNELAFRNAYDEGVSLIITVDNGIQGHKEIEMVQKLGVDVIVTDHHEIGHTLPEAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + LC AGV + + ++ L+ + L A+ T+ D Sbjct: 180 AIVHPMHPEYEYPFHFLCGAGVAYKLSQVL-----------LDNPPNYFVSLAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V + NR+ V +GL + +KAL+ + + I E +G++IGP +NA GR+ Sbjct: 229 LVSMTDENRSIVKQGLSFLNQSCPIQIKALLNQAGYNDTINEETVGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+++D +E E LA +++ N R+ + + + ++A A + ++ Q ++ Sbjct: 289 DASLSAELLMTEDEEEAEFLAEQVEHFNVERKEIVAQITDEALAIAEEKVNNGNQ--FLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ + E GS RSIE + + + Sbjct: 347 LAKENWHEGVLGIVASKIVETYALPTLILNIDLEQNHAKGSARSIEQVSM--FEILSAHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+E L + + P + L + ++I Sbjct: 405 DLISKFGGHHMAAGMTMEIDYIEALEQGLNDWMFKLSEHTSLEPTKHVSVKLEENDISIN 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I ++ P+G P+ ++++ +R + HL++ LQ+I ++ Sbjct: 465 NIRDIQRLSPFGTDFEKPLLEIDDNEVVDVRAIGKDKNHLKLV---TGQLQLQSIFWKNG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+ +++ G+L +N W G++ Q + D + Sbjct: 522 QL----ATQIEPGQPINLLGNLQINEWNGNQSPQFIIQDIA 558 >gi|309807232|ref|ZP_07701204.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 03V1-b] gi|312875487|ref|ZP_07735490.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 2053A-b] gi|325912876|ref|ZP_08175254.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners UPII 60-B] gi|308166370|gb|EFO68577.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 03V1-b] gi|311088998|gb|EFQ47439.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 2053A-b] gi|325477869|gb|EGC81003.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners UPII 60-B] Length = 761 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 164/573 (28%), Positives = 280/573 (48%), Gaps = 30/573 (5%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80 ++ + + K+ + I A++ R ++ D DF LN L DP ++ D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMKK 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 A RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 63 TADRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 292 LLLCDDQEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GG Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A GL++++ + +L + F+ + + + D LN + + + + Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKV 465 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 GP+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518 Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|330823719|ref|YP_004387022.1| single-stranded-DNA-specific exonuclease RecJ [Alicycliphilus denitrificans K601] gi|329309091|gb|AEB83506.1| single-stranded-DNA-specific exonuclease RecJ [Alicycliphilus denitrificans K601] Length = 571 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 184/580 (31%), Positives = 270/580 (46%), Gaps = 30/580 (5%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 E RA ++ + ++AR+ R + AK+ L+ ++ L+P P L +AA Sbjct: 7 EIPPRAAWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLKGAREAATL 62 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143 + AI +++ I DYD DGA + A+ +R L + +PDR+VDGYG S+ Sbjct: 63 LADAIAQDKRLAIVADYDCDGATACAVGVRGLKLLGARHVQYLVPDRVVDGYGLTASIAR 122 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + +GA ++ITVD G S + + A G+ V+V DHH + A A+VNPN+ Sbjct: 123 RVAQQGADVLITVDNGIASVEGVAEAKALGLAVLVTDHHLPGPQLPAADAIVNPNQPGCG 182 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNR 261 + GV+F VL+ + LR + L LL LVAL TV DVV L NR Sbjct: 183 FESKSMAGVGVMFYVLIQLRAELRARGRFDQASQPRLEPLLPLVALGTVADVVRLDNNNR 242 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL R Q PG++AL + + T + G+ +GP INA GR+ + LG Sbjct: 243 RLVAQGLKRMRAGQMQPGIQALFDAAGRKAQAATTFDFGFALGPRINAAGRLADMTLGIE 302 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRW 378 L++DD LA +LD +N+ RR +E M EQA + D+ + I V + Sbjct: 303 CLLTDDDARAAELARQLDAINRERRELEGGMREQALLLAESLFDESEEPPPAISVFDPDF 362 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA--VEEG 432 H G+VG++A+RLK+K RPSF + + + GSGRSI GF + + G Sbjct: 363 HEGVVGIVASRLKDKLHRPSFVFATSGAPGREHELKGSGRSIAGFHLRDALDLVAKRHPG 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +++K GGHAMAAG TV +F F + A + A T + DG L L Sbjct: 423 VILKFGGHAMAAGCTVAAEHFAAFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAEL 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 +D L +G G P F ++ S R+V HL + Q + AI F Sbjct: 483 VDQLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSLKLLHQ-GRPVDAIWFGHTE 539 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + L VN WRG +R Q V Sbjct: 540 QLPERAL---------LAFRLDVNEWRGERRVQFLVEGVQ 570 >gi|83748272|ref|ZP_00945298.1| Single-stranded-DNA-specific exonuclease recJ [Ralstonia solanacearum UW551] gi|207743546|ref|YP_002259938.1| single-stranded-dna-specific exonuclease protein [Ralstonia solanacearum IPO1609] gi|83725113|gb|EAP72265.1| Single-stranded-DNA-specific exonuclease recJ [Ralstonia solanacearum UW551] gi|206594944|emb|CAQ61871.1| single-stranded-dna-specific exonuclease protein [Ralstonia solanacearum IPO1609] Length = 565 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 173/574 (30%), Positives = 270/574 (47%), Gaps = 24/574 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 ++ H I ++AR+L R V+ L+ + L+ P L D D AAR Sbjct: 8 PHSAETASLLAGHGIHPVLARILAARGVARP---SELSTELTDLL-SPAQLKDIDDAARY 63 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + AI ++++I DYD DGA + A+ +R L +P+R GYG +P ++ Sbjct: 64 LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 E +++TVD G + A GIDV+V DHH ++ A +VNPN+ Sbjct: 124 AAREQPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262 HL GV+F VL+ + LR L +LLDLVAL TV DVV L NR Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRSRGAFTPQNQPRLDALLDLVALGTVADVVRLDANNRL 243 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R + G+ AL + + +LG+ +GP +NA GR+ + +LG Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ--QASVIVVEGDRW 378 L++DD +A +LD +N+ RR +E+ M ++A A + + D+ I V + W Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSTLADMDGAGRHTIAVYNETW 363 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436 H G++G++A+RLK+KF RP + +DG GSGRSI GF + + G++VK Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAGL++ F R + F+ + + + V + DG +++L Sbjct: 424 FGGHAMAAGLSLRADGFDRFVETFEAVGREWLNEALLSRVLETDGEAEPECFTPQFVELL 483 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 E+ +G G P P F + S V+ HL++ + + +AI F Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFEAIWFNHAE------ 534 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G +V L N + G R Q+ + A Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565 >gi|299067166|emb|CBJ38362.1| Single-stranded DNA-specific exonuclease [Ralstonia solanacearum CMR15] Length = 565 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 174/574 (30%), Positives = 269/574 (46%), Gaps = 24/574 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 ++ H I I+AR+L R V+ L+ + L+P P L D AAR Sbjct: 8 PHSAETASLLAGHGIHPILARILAARGVARP---SELSTELTDLLP-PAQLKGIDDAARY 63 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + AI ++++I DYD DGA + A+ +R L +P+R GYG +P ++ Sbjct: 64 LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 E +++TVD G + A GIDV+V DHH ++ A +VNPN+ Sbjct: 124 AARERPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262 HL GV+F VL+ + LR+ L +LLDLVAL TV DVV L NR Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRRRGAFTPQNQPRLDALLDLVALGTVADVVRLDANNRL 243 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R + G+ AL + + +LG+ +GP +NA GR+ + +LG Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRW 378 L++DD +A +LD +N+ RR +E+ M ++A + + D I V + W Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMTILSSTLANMDSAGRHTIAVYNETW 363 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436 H G++G++A+RLK+KF RP + +DG GSGRSI GF + + G++VK Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDTLDAVHKRCPGLIVK 423 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAGL++ F R + F+ + + + V + DG A +++L Sbjct: 424 FGGHAMAAGLSLHADGFDRFVETFEAVGREWLNESLLSRVLETDGEAEAECFTPQFVELL 483 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 E+ +G G P P F + S V+ HL++ + + AI F Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFDAIWFNHAE------ 534 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G +V L N + G R Q+ + A Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565 >gi|259500711|ref|ZP_05743613.1| recombination protein J [Lactobacillus iners DSM 13335] gi|302191401|ref|ZP_07267655.1| single-stranded DNA-specific exonuclease [Lactobacillus iners AB-1] gi|259168095|gb|EEW52590.1| recombination protein J [Lactobacillus iners DSM 13335] Length = 761 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 160/572 (27%), Positives = 277/572 (48%), Gaps = 28/572 (4%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 ++ + + K+ + I A++ R ++ D DF + DP ++ D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNDDESKLADPFLMHDMKKT 63 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 64 VNRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N + Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL L Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GGH Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A GL++++ + +L + F+ + + + D LN + + + + G Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519 Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|300704515|ref|YP_003746118.1| single-stranded DNA-specific exonuclease [Ralstonia solanacearum CFBP2957] gi|299072179|emb|CBJ43511.1| Single-stranded DNA-specific exonuclease [Ralstonia solanacearum CFBP2957] Length = 565 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 172/574 (29%), Positives = 269/574 (46%), Gaps = 24/574 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 ++ H I ++AR+L R V+ L+ + L+P P L D AAR Sbjct: 8 PHSAETASLLAGHGIHPVLARILAARGVARP---SELSTELTDLLP-PAQLKGIDDAARY 63 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + AI ++++I DYD DGA + A+ +R L +P+R GYG +P ++ Sbjct: 64 LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 E +++TVD G + A GIDV+V DHH ++ A +VNPN+ Sbjct: 124 AAREQPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRA 262 HL GV+F VL+ + LR L +LLDLVAL TV DVV L NR Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRSRGTFTQQNQPRLDALLDLVALGTVADVVRLDANNRL 243 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R + G+ AL + + +LG+ +GP +NA GR+ + +LG Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC--DDIQQASVIVVEGDRW 378 L++DD +A +LD +N+ RR +E+ M ++A A + + D + V + W Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSALASMDGAGRHTVAVYNETW 363 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436 H G++G++A+RLK+KF RP + +DG GSGRSI GF + + G++VK Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAGL++ F R + F+ + + + V + DG +++L Sbjct: 424 FGGHAMAAGLSLRADGFDRFVETFEAVGREWLNEALLSRVLETDGEAEPECFTPQFVELL 483 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 E+ +G G P P F + S V+ HL++ + + +AI F Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKDKHLKLQL-GRGKQRFEAIWFNHAE------ 534 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G +V L N + G R Q+ + A Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565 >gi|166031164|ref|ZP_02233993.1| hypothetical protein DORFOR_00850 [Dorea formicigenerans ATCC 27755] gi|166029011|gb|EDR47768.1| hypothetical protein DORFOR_00850 [Dorea formicigenerans ATCC 27755] Length = 580 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 174/587 (29%), Positives = 288/587 (49%), Gaps = 31/587 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 RWV L AI++K I +A ++ NR+ + + +LN +I L D + + Sbjct: 12 RWVLLRKGADF---EAISKKFHISPRLASLIRNRDVIGDEAINQYLNGTIAELY-DGMQM 67 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A + + I + EKI + GDYD DG + +++ L + IPDRI DGY Sbjct: 68 KGMPQAVEILTEKIRDREKIRVIGDYDCDGINATYILLEGLEKLGAKVDSDIPDRIKDGY 127 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N L+++ +G IIT D G + ++Y G+ +IV DHH+V +E Sbjct: 128 GLNQHLIDRAHEDGIDTIITCDNGIAAAKEIEYGKALGMTIIVTDHHEVPYKENEAGRRY 187 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+V+P + LC A V + ++ + QD DL LL+ VA Sbjct: 188 ILPPADAVVDPRQEGCEYPFKGLCGAAVAYKLVEALCEANGQD-----VADLDYLLENVA 242 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ L NR V +GL + +R N GL+ALI+ + + I A ++G+++ P + Sbjct: 243 IATVADVMDLTEENRILVKQGLEMLKRTSNLGLRALIQCIGLEGKKIQAYHIGFILAPCL 302 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA G++ + LL + +E +MLA L LN++RR M ++++A AKV + DI Sbjct: 303 NASGKLDTAKRALALLRAKTGREADMLAGDLKALNESRRDMTDRVVDEAMAKV--EQTDI 360 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+V+ H + GL+A R++E + RP F ++ EDG GSGRSIE + + + + Sbjct: 361 REDKVLVIYLPDCHESLAGLVAGRVRENYYRPVFVLTDSEDGV-KGSGRSIESYSMYEEL 419 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L K GGH MAAGL++++ N + + T ID L Sbjct: 420 TGC--GDLLTKFGGHPMAAGLSLDKENVEKFKRRLNDQC--TLSEEELTEKVVIDMELPF 475 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQA 543 +A+ I+ LE P+G GN PVFA +Q ++++ + T ++A Sbjct: 476 AAITEHFIEELEYMEPFGKGNTKPVFAARGVVMQHMKIIGKNKNVAKATAIDAAGNRMEA 535 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I FR + +M +T + +N +RG ++ Q+ + Sbjct: 536 ICFRDVQEFAERC--ERNNGKMSITFYPGINEFRGERQIQIVITHYR 580 >gi|323706432|ref|ZP_08117994.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacterium xylanolyticum LX-11] gi|323534217|gb|EGB24006.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacterium xylanolyticum LX-11] Length = 817 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 186/577 (32%), Positives = 295/577 (51%), Gaps = 26/577 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + WVS + I K + VA+ +VNR ++LNP++ L +P + Sbjct: 3 YNWVSKKAKNDK-LVDEIANKFNLKTYVAQTIVNRGYDDLKKVYEYLNPTLNAL-NNPYL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +KA I I ++KI I+GDYDVDG S +++ L N + YIPDR+++G Sbjct: 61 LEGIEKAVSIIKYHIGLNDKIAIYGDYDVDGITSTSILYIALKRLGANVDFYIPDRLLEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ + G +LIITVDCG S +QYA G+DVI+ DHHQV A + Sbjct: 121 YGINMDAVKILCDSGTKLIITVDCGIASLKEVQYARKLGLDVIITDHHQVPDILPEANCI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP+ D L GV F + + + L + L LD+VAL TV D+V Sbjct: 181 VNPHIKDCAYPYRELAGVGVAFKLCLAL-----------LGDEALEFLDVVALGTVADIV 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR V +GL + R N GL+ALI I ++G+++ P +NA GR+ Sbjct: 230 PLTGENRVIVKEGLKMMRNTKNKGLRALINSAGLNKRDIDTYHVGFILAPRLNAAGRLES 289 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L LL++DD E + +A L+ N R+ +E +LE+A +V D+++ IV+ Sbjct: 290 AVLCVNLLVTDDPIEADRIAAYLNSENAKRQEIEKKILEEAIMQV-ENNVDLEKEKFIVL 348 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WHPG++G++++R+ E++ RPS IS G G GSGRSI+GF+I + + +A Sbjct: 349 YSENWHPGVIGIVSSRITERYHRPSILISVSG-GFGKGSGRSIKGFNIYEAIKYA--GDC 405 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH MAAGLT++ ++A + A P+ +I+ ++ ++ Sbjct: 406 LINFGGHEMAAGLTIDSSQIDDFRFKLNEYAKTKLTAFDMMPIIEIETSID-DVLDCDGA 464 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 + + P+G+GNP P++A N ++ I + H+++ E D + F Sbjct: 465 NQVSLLEPFGSGNPVPMYAIKNLVVKQISLFGDNKHIRIMVEKND-VMYNVVLFNRA--- 520 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 EF S G + + G + VN W G K+ ++ D Sbjct: 521 -CEFDKISTGAVLDIAGFVKVNEWNGEKKLEIIAKDI 556 >gi|325911499|ref|ZP_08173910.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners UPII 143-D] gi|325476699|gb|EGC79854.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners UPII 143-D] Length = 761 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 163/573 (28%), Positives = 279/573 (48%), Gaps = 30/573 (5%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80 ++ + + K+ + I A++ R ++ D DF LN L DP ++ D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMKK 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 63 TVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ ++ G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N Sbjct: 123 RYQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MADNMSELLDLAMIGTIGDMVKVSGEG 231 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GG Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A GL++++ + +L D F+ + + + D LN + + + + Sbjct: 409 HEFACGLSLKKDSLVKLRDCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKV 465 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 GP+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YL 518 Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|219870535|ref|YP_002474910.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis SH0165] gi|219690739|gb|ACL31962.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus parasuis SH0165] Length = 540 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 174/547 (31%), Positives = 266/547 (48%), Gaps = 18/547 (3%) Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 + S++ L P L + ++A ++ ++ ++I+I GD+D DGA S AL + L Sbjct: 2 DLSLKGLHH-PKGLANMEQAVDLLLDSLTRQDRIVIVGDFDADGATSTALAILALRQFGF 60 Query: 122 -NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 + IPDR GYG + S+ E + +GA ++TVD G +S++ + QGI V+V D Sbjct: 61 QQVDYLIPDRFSQGYGLSLSVAEMVMAKGADFVLTVDNGISSFEGIALLKAQGIRVLVTD 120 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLL 239 HH A A+VNPN L GV+F V++ + +R+ ++ Sbjct: 121 HHLPADSLPNADAMVNPNLAACTFPSKSLAGVGVIFYVMMALRAKMRELCYFKEKEPNIA 180 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENL 297 LLDLVAL TV DVVPL NR V +GL R G++AL E + A +L Sbjct: 181 ELLDLVALGTVADVVPLDHNNRILVNQGLNRIRSGHCRVGIQALAEVAKRDLYALQASDL 240 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+ I P +NA GR+ +LG LLISD+ A++LD LNQ R+ E M +A Sbjct: 241 GFAIAPRLNAAGRLENMSLGVELLISDNLALARQFALELDSLNQTRKEFEQEMKAEALVL 300 Query: 358 VLTQ--CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSG 413 QA IV+ WH G++G+LA+R+K++F RP A + E D GS Sbjct: 301 CAKLPTLSQQNQAQGIVLYQPDWHQGVIGILASRIKDQFHRPVIAFAQESDDSEYLKGSA 360 Query: 414 RSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 RSI G + ++ A + ++VK GGHAMAAGLT+ + + + F + + + Sbjct: 361 RSIAGLHMRDLLERIDAKYDNLIVKFGGHAMAAGLTIHQDHLAQFQTVFDETVNEVAEPE 420 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 V DG L A N+A ++L+ AGP+G P P F ++ +++ HL+M Sbjct: 421 WLQGVIYTDGELLADEFNLATAELLKQAGPWGQHFPEPTFEGR-FRILQQKLLAGKHLKM 479 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E++ AI F V + + K+ L +N +RG K QL + Sbjct: 480 MVENEYGTLFDAIWFNVDVKCYPDLSI----KQATFVYKLDINEFRGGKNLQLLIEYL-- 533 Query: 592 VEGHHFA 598 +E F Sbjct: 534 LEDDQFK 540 >gi|312793694|ref|YP_004026617.1| single-stranded-DNA-specific exonuclease recj [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180834|gb|ADQ41004.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor kristjanssonii 177R1B] Length = 798 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 169/577 (29%), Positives = 300/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 RWV N + I + I+ +VL NR + + FL+PS++ L +P + Sbjct: 6 KRWVLKDNSNLENMDIEINGRKIKHQII-KVLNNRGIQEKGDIEKFLSPSLKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D ++A + I +AI + +++I+GDYD DG S L+ L + + + YIP+R DG Sbjct: 64 LNDMNEAVKIIHEAILHKSRVLIYGDYDCDGVTSTYLLYSNLRNF-LPTSYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++K + + ++ITVD G +S++ ++Y +G +I+ DHH+ K A A+ Sbjct: 123 YGLNLDVLKK-LEDKFDILITVDTGISSHNEVKYLKEKGKTIIITDHHEPKEVLPEADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D + L GV F +L + +N L LD+VA+ T+ DV+ Sbjct: 182 INPKRKDSIYPFRDLAGVGVAFKLLHAL-------KSSGINLKLSEYLDVVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR + GL + + N GL+ LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRVFAKFGLKILKNTKNIGLQKLIEVAGLSSKEELKPYDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+ DS E +A +LD N+ R+ +E +++A++ ++ + +++ V Sbjct: 295 DANLAMSLLLQQDSSLAENIARRLDAENRKRQEIEEKTIKEAQSLIMKNKNILKKKIF-V 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G+VG+ ++++ EK+ RPS ++ ++G GSGRSI+GF++ + + E Sbjct: 354 LSNSAWHAGVVGIASSKITEKYYRPSLLLTLSDEGVLKGSGRSIKGFNLFEALKSCSE-- 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ N +L + A + +I P ++D VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLPVDNIEKLDEILNSIAQD-YHFMIFKPAIEVDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + +S + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNLVVENFRFMGEDNKYYKFFTGNSTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + ++ Q ++D Sbjct: 527 LEDEDELISMKKVDIVCKLERNLFNSVRKNQFNIIDI 563 >gi|332968897|gb|EGK07944.1| single-stranded-DNA-specific exonuclease RecJ [Kingella kingae ATCC 23330] Length = 570 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 281/582 (48%), Gaps = 29/582 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + + A Q P ++A++ R+V + D L S+ L+P L +C Sbjct: 5 KQIATRPVVAEVQAALQNAGTPPLLAQLYAARHV---QSVDELGDSLSQLIPY-TQLKNC 60 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 + AA R+ AI +KI+I DYD DGA + ++ ++ L + + ++P+R GYG Sbjct: 61 EAAAERLATAIEQRQKILIIADYDADGATACSVGIKGLRNMGAVVDFFVPNRFEHGYGLT 120 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P L + GAQLI+TVD G +S + + A GID +V DHH S +P +VNPN Sbjct: 121 PELADIAAQMGAQLILTVDNGISSQEGVARAKALGIDTVVTDHHTAGSS-VPDCIIVNPN 179 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVV 254 + L GV+F VL+ + LR +L +LLDLVAL TV DVV Sbjct: 180 QRGCDFPSKSLAGVGVIFYVLMALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADVV 239 Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIG 312 PL NR V +GL R + G++AL E + ++G+ +GP INA GR+ Sbjct: 240 PLDHNNRILVSQGLKRIRAGKMSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRLD 299 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + ++G L+SD+ + +A +L+ LNQ R+ +E ML++ A Q + Sbjct: 300 DMSIGISCLLSDNLPYAQQIASELNQLNQTRQEIEQGMLQEVLALCPDVLPSSQT--TLS 357 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430 V +++H G+VG++A+RLK++F RP F + +DG+ GSGRSI G + + Sbjct: 358 VYHEQFHQGVVGIVASRLKDRFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAKRC 417 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++VK GGHAMAAGLT+ + F C F+ +V I + + DG L+ S + + Sbjct: 418 PDMIVKFGGHAMAAGLTLRKHRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDITL 477 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 D++ +G P P F+ + + + H + + +D +A+ +R Sbjct: 478 EQADLINR-QVWGQNFPPPSFSDE-FDVVRQQFMGKEQKHKKAWLQ-KDGYEFEAMFWRC 534 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + VN W G++ QL V Sbjct: 535 EDE---------LPNKIRIVYRPTVNEWNGNQELQLYVDYWE 567 >gi|262377199|ref|ZP_06070424.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter lwoffii SH145] gi|262307937|gb|EEY89075.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter lwoffii SH145] Length = 566 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 169/560 (30%), Positives = 273/560 (48%), Gaps = 21/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P VA +L R V + + + P + +A + + QAI + +KI+I Sbjct: 20 GVPAFVAEILARRGVESEQELE----LKLKHLLAP-TMKGLPEAIQLMDQAIDHGQKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L N +PDR GYG P++ + F++ L+ITV Sbjct: 75 VGDYDADGATSTALMVLALRDMGANVEYLVPDRFKYGYGLTPAIADLAFVSFTPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+D ++ A + G+ VI+ DHH A A+VNPN+L L GV F Sbjct: 135 DNGISSHDGVKQAQDHGMQVIITDHHLTTKPTPQAEAVVNPNQLGCDFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QG 275 +L + ++ + + + LDLVAL T DV L NR V GL ++ Q Sbjct: 195 YILANLSTHRKKLG--KSSTVITNYLDLVALGTYADVASLDYNNRILVDAGLKRVQQGQC 252 Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + A++LG+++GP INA GR+ ++G L++ D LA Sbjct: 253 RAGISALLDIAKRDPAGLKAQDLGFVLGPRINAAGRMETMDIGIECLLAPDLATAYPLAE 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E + + A ++ Q D + +++ WH G++G++A RLKE+ Sbjct: 313 QLNQLNVERRQVEGKIKQDALNELEKIQLDATALPAALIMFEPHWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + ++DG GS RSIEG I + ++ GGHA AAGLT+++ Sbjct: 373 FHRPSIVFAADQDGIHIKGSARSIEGIHIRDAIEQVAEQYPHLVSHFGGHAAAAGLTLKK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F+ + + T DG L ASA +I +D+L++ P+G P P+ Sbjct: 433 ENFAEFKQVFEVLIGAM-DEDLFTATLWTDGELPASAFHIETVDLLQNLSPWGQKFPQPI 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F K+ R + HL++ ++ + + AIAF + + +R + Sbjct: 492 FDG-VFKIMDYRWLKDVHLKLRVALENGQVVDAIAFNAADKYDFDPMKDTR-----LVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L N + G+ Q+R++ Sbjct: 546 LDKNVFNGNVSLQMRIIHLE 565 >gi|300854110|ref|YP_003779094.1| single-stranded-DNA-specific exonuclease recJ [Clostridium ljungdahlii DSM 13528] gi|300434225|gb|ADK13992.1| single-stranded-DNA-specific exonuclease recJ [Clostridium ljungdahlii DSM 13528] Length = 591 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 171/604 (28%), Positives = 289/604 (47%), Gaps = 44/604 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 RW+ ++ AI + I ++VA +LVNR + K F+NPS+R L +PL++ Sbjct: 4 RWMLKRCKKD---VKAIAKMAGISEVVASILVNREIETQGEIKSFINPSMRDLQ-NPLLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + I AI + I ++GDYDVDG S ++ L C +IPDRI +GY Sbjct: 60 KDMESGVDIIYSAIKEKKNIAVYGDYDVDGVMSTYILYCGLLRCGAMVKYHIPDRITEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N +EK +G QLIIT D G ++ + ++ A + V++ DHH + + Sbjct: 120 GINIHSIEKLKEDGIQLIITCDNGISALEQIKRAMELNMQVVITDHHDIPFSDDEDGKRK 179 Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A+++P + D LC AGV F + ++Y + L ++ Sbjct: 180 FLIPEADAVIDPKQEDCKYPFKKLCGAGVAFKFIQVLYDKFNIKKEEA-----LKFIEYA 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ T+CDVV LIG NR KGL + N G++ LI+ + + + ++G++IGP Sbjct: 235 AIGTICDVVDLIGENRVIAKKGLEMLNNTENLGIRELIKETSLEDKTLNSYHIGFVIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + L LL+ D LA KL LN +R+ M L + KV + D Sbjct: 295 INATGRLQSAALALELLLCKDPDRAHELAKKLHELNIHRQDMTINSLNKIIDKV--EKSD 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 +++ V+VV H I G++A RLKE++ PS I+ GSGRSIEG+++ Sbjct: 353 LKKDKVLVVYEKGVHESIAGIVAGRLKERYNVPSIVIT-NGKDFSKGSGRSIEGYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + ++ + GGH +AAGL++E N +L D + + P +ID + Sbjct: 410 EELVKCKELMFQFGGHPLAAGLSIEEENIDKLRDRLNRNCK--LTDEDIIPKIRIDKQVP 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDS-ETL 541 ++++ +I+ ++ P+G GN PVF N + + + L++ ++S + Sbjct: 468 LNSISFKMIEDIKRLEPFGKGNSTPVFGEKNVDVFRVYFIGKDKNTLKLFCRLKNSLNKI 527 Query: 542 QAIA-----------FRVYGTPLGEFLMQS--RGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 A++ F+ YG+ ++ + + +M VN ++G++ QL + D Sbjct: 528 DALSFDGGEKFRQLIFKAYGSGAAYKILNNDFKNLKMDFIYLPSVNEYKGNRNIQLILKD 587 Query: 589 ASPV 592 Sbjct: 588 FRLA 591 >gi|315653454|ref|ZP_07906375.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners ATCC 55195] gi|315489145|gb|EFU78786.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners ATCC 55195] Length = 761 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 160/572 (27%), Positives = 278/572 (48%), Gaps = 28/572 (4%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 ++ + + K+ + I A++ R ++ D DF + + DP ++ D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADETKLADPFLMHDMKKT 63 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 64 VDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N + Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL L Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GGH Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A GL++++ + +L + F+ + + + D LN + + + + G Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519 Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|91792111|ref|YP_561762.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella denitrificans OS217] gi|91714113|gb|ABE54039.1| single-stranded-DNA-specific exonuclease RecJ [Shewanella denitrificans OS217] Length = 574 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 173/566 (30%), Positives = 267/566 (47%), Gaps = 21/566 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ ++ R + D LN L+ P + AA + AI +++ I+I Sbjct: 19 DMHPLLQQIFAKRGAAFDDCTLALN----QLLH-PKSMKGLAAAASIVADAIMDNKSILI 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA S + M L + IP+R GYG +P ++ + AQL+ITV Sbjct: 74 VGDFDADGATSTCVCMLALRMMGAKKVDYLIPNRFDYGYGLSPEIVALAYRKEAQLLITV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH A A+VNPN+ + GV F Sbjct: 134 DNGISSIEGVAAAKALGMQVVVTDHHLPGKTIPDADAIVNPNQAGCEFSSKAIAGVGVAF 193 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 ++ + + LR + +L LLD+VAL TV DVV NR V GL R Sbjct: 194 YLMSALRQELRSRDWYQNQALPEPNLAELLDIVALGTVADVVAFDRNNRIMVQAGLQRVR 253 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G+ AL+E + I A + G+ +GP +NA GR+ E LG L+ +D Sbjct: 254 SGRCRVGITALLEVAKRTPERIVAADFGFAVGPRLNAAGRLDEMALGVETLLCEDINLAR 313 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEA-KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 +A +LD LN RR +E+ M ++A D+ Q I + WH G++G+LA+R Sbjct: 314 RMAAQLDGLNTERRELEADMQQEALKTLASITLDETQLPWGIALFQADWHQGVIGILASR 373 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLT 447 +K+++ RP A + DG GS RSI+G + ++ G+++K GGHAMAAGLT Sbjct: 374 IKDRYHRPVIAFADAGDGSIKGSARSIKGLHMRDLLEQINTQHPGMILKFGGHAMAAGLT 433 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 + +F + F + ++ T DG L +++ +L +AGP+G Sbjct: 434 LAADHFDQFELAFDEAIRGLLTKEQLTGEVLSDGELAIEHMSLETAMLLRNAGPWGQHFE 493 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 PVF L R+V HL+M E+Q S L AIAF V + + + + Sbjct: 494 EPVFDG-VFTLVQQRLVGEKHLKMLLETQCASLMLDAIAFNVDLQAWPD----ASVRHVR 548 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 V L VN +RG + QL + V Sbjct: 549 VAYKLDVNEFRGKQNLQLMIEHLEAV 574 >gi|329921039|ref|ZP_08277564.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners SPIN 1401G] gi|328935109|gb|EGG31594.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners SPIN 1401G] Length = 761 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 160/572 (27%), Positives = 278/572 (48%), Gaps = 28/572 (4%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 ++ + + K+ + I A++ R ++ D DF + + DP ++ D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADETKLADPFLMHDMKKT 63 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 64 VDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N + Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL L Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GGH Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A GL++++ + +L + F+ + + + D LN + + + + G Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519 Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|254519459|ref|ZP_05131515.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. 7_2_43FAA] gi|226913208|gb|EEH98409.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. 7_2_43FAA] Length = 593 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 167/604 (27%), Positives = 285/604 (47%), Gaps = 46/604 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 W+ + +EG L ++ +V R+L NR + + A FLN +I D ++ Sbjct: 4 NWILVNKKEGF---LRLSNSINENPLVLRLLANRGIDTFEEANRFLNGTINDFY-DGYLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D K I AI N++KI+I+GDYD DG S + + L + N + YIP+R +GY Sbjct: 60 ADMKKGVSIIKNAILNNKKIIIYGDYDCDGVISTTIFYKALKNVGANYSYYIPNREDEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G + ++K EG ++++T D G +++ + A G+++++ DHH + Sbjct: 120 GMHSGRIKKLKEEGYEVVLTCDNGIAAFEQVDLAKELGMEIVITDHHDIPIRENDKGELK 179 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A A++NP R D +LC AGV +Y D L L+ Sbjct: 180 ETVPSADAIINPKRSDCKYPFKNLCGAGVALKFSKCLYDEFEIDE-----EKFLDLIQFA 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 ++ATVCDVV L+ NR V KGL + N G++ L + I +LG++IGP Sbjct: 235 SIATVCDVVDLVDENRIIVKKGLELLNNTKNFGIQELKKSTGLSDKRIEEYHLGFVIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ ++L LLI+DD + + L+ +L LN R+ + E+ K+ + + Sbjct: 295 INATGRLETADLSVELLITDDVNKAKALSNQLSELNTIRQDLTKESTEKIIEKI--ENEK 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ VIVV D H I G++A R+KE++ P ++ + GS RSIE ++I Sbjct: 353 NKEEKVIVVYDDTIHESIAGIVAGRVKERYNMPCIVLT-KGKEMPKGSARSIESYNI--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + ++ K GGH MAAGL+++ N L + + P KID L Sbjct: 410 EELSKCSELIEKFGGHPMAAGLSIKEENIIPLRNKLNNICK--LSDNDIIPTVKIDSPLG 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSET-- 540 + +N LI+++ES P+G GN +P+FA N ++ I ++ L++ F+ + + Sbjct: 468 LNYLNEDLINIIESLRPFGKGNSSPLFAVKNVNIERIWLLGKEKNFLKLRFKFESNGRFL 527 Query: 541 -LQAIAFRVYGTPLGEFLMQSRGKRM-------------HVTGHLCVNYWRGSKRCQLRV 586 + ++F + T E + + + V + +N + G + QL + Sbjct: 528 HIDGVSFDKFETFKEEVINKYGEEEFIRACDSSYINLKADVIYYPNINEFNGKRNIQLMI 587 Query: 587 LDAS 590 + Sbjct: 588 KNIR 591 >gi|58337522|ref|YP_194107.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus NCFM] gi|227904163|ref|ZP_04021968.1| recombination protein J [Lactobacillus acidophilus ATCC 4796] gi|58254839|gb|AAV43076.1| single-stranded-DNA-specific exonuclease [Lactobacillus acidophilus NCFM] gi|227868182|gb|EEJ75603.1| recombination protein J [Lactobacillus acidophilus ATCC 4796] Length = 757 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 152/578 (26%), Positives = 277/578 (47%), Gaps = 32/578 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + +E + + K+ + + A++ R+++ D DF + + +PL++ Sbjct: 2 KWQKRITKELDSD---LVDKYQLSSLSAQLFALRDINTDEKLDFWFNATEENLANPLLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +KA RI QAI N EKI I+GDYD DG + A+M LS + + +IPDR DGYG Sbjct: 59 DMEKAVERINQAIDNGEKITIYGDYDADGITATAIMTETLSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN ++ + +G +LIITVD G T D ++YA G+D I+ DHH + + +YA+V+ Sbjct: 119 PNIERYKEIVADGTKLIITVDNGVTGIDEVKYAKENGVDTIITDHHTFQEKVPDSYAVVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRELMQ-----------DTMPELLDLAMIGTLGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLEILNQTTRPGLQALIKNAGLTLGSINETDVGFNICPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD + +A +++ LN R+ + + + E+ + + Q+ + +V+ Sbjct: 288 LAVELLLSDDDIAAQKIADQIEELNNQRKELTTDVYEKCMSIIRENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGR+ GF++ ++ +E + Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDVGEVKGSGRAFNGFNLFNALNPLKDE-LFT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ L + + D L + + + Sbjct: 405 KFGGHDFACGLSMQENKIDTLRQKLESSYQVNGESESKG----YDLELPLNDLTPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+P P+F+ + + + H+++T S+ +L + F Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITQFYKIGKDKNHVKLT-ASKKGGSLAIVGFN------ 513 Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDAS 590 +FL + + L +N +R Q + Sbjct: 514 KDFLNNNLLPFISKIFIQLTLNTYRKQISLQGIIEGIE 551 >gi|300691905|ref|YP_003752900.1| single-stranded DNA-specific exonuclease [Ralstonia solanacearum PSI07] gi|299078965|emb|CBJ51625.1| Single-stranded DNA-specific exonuclease [Ralstonia solanacearum PSI07] Length = 565 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 170/574 (29%), Positives = 269/574 (46%), Gaps = 24/574 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 ++ H I ++AR+L R V+ L+ + L+ P L D AAR Sbjct: 8 PHSAETASLLAGHGIHPVLARILAARGVARP---SELSTELADLLA-PAQLKGIDDAARY 63 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + AI ++++I DYD DGA + A+ +R L +P+R GYG +P ++ Sbjct: 64 LADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIVAL 123 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 E +++TVD G + A GIDV+V DHH ++ A +VNPN+ Sbjct: 124 AAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGF 183 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRA 262 HL GV+F VL+ + LR L +LLDLVAL TV DVV L NR Sbjct: 184 PSKHLAGVGVMFYVLLALRAELRNRGAFTLQNQPRLDALLDLVALGTVADVVRLDANNRV 243 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R + G+ AL + + +LG+ +GP +NA GR+ + +LG Sbjct: 244 LVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGIEC 303 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ--QASVIVVEGDRW 378 L++DD +A +LD +N+ RR +E+ M ++A A + + ++ + I V + W Sbjct: 304 LLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSTLVGMEGSGSHTIAVYNETW 363 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVK 436 H G++G++A+RLK+KF RP + +DG GSGRSI GF + + G++VK Sbjct: 364 HQGVIGIVASRLKDKFHRPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVK 423 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAGL++ F + F+ + + + V + DG + +++L Sbjct: 424 FGGHAMAAGLSLRADGFAPFVETFEAVGREWLNEALLSRVLETDGEADPECFTPQFVELL 483 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 E+ +G G P P F + S V+ HL++ + + AI F Sbjct: 484 ET-HVWGQGFPAPSFCGE-FDVLSQAVLKEKHLKLQL-GRGKQRFDAIWFNHAE------ 534 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G +V L N + G R Q+ + A Sbjct: 535 ---PLGASAYVAYRLDNNTFNGITRVQMVIEHAQ 565 >gi|293610586|ref|ZP_06692886.1| SsDNA exonuclease [Acinetobacter sp. SH024] gi|292826930|gb|EFF85295.1| SsDNA exonuclease [Acinetobacter sp. SH024] Length = 566 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 172/559 (30%), Positives = 261/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L + A I QAI +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKNLLAP-QLKGLETAVALIDQAIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM+ L + +PDR GYG P++ E L+ITV Sbjct: 75 VGDYDADGATSTALMVLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAHQTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ V++ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVDAAHALGMQVVITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + NK + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNKQNKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ S + A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREASSLRAQDLGFVLGPRINAAGRMESMRIGIECLLADTMESAYPIAR 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E M +QA + + + Q +++ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIERRQIEGEMKQQALSALDSLQLSKEDVPQALILFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + E+ + GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + + DG L ASA+ + +D +E GP+G P Sbjct: 433 ENFEAFKTAFTNCIAAM-EESLFQATLWTDGELPASALQLNTLDWIEQLGPWGQKFSFPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEG-HFKVVDYRWLKETHLKLKLAL-DQYSFDAIAFNAA----GRFEFDPMRDYVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNAFNGNVNLQLRIIHL 564 >gi|289578224|ref|YP_003476851.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter italicus Ab9] gi|289527937|gb|ADD02289.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter italicus Ab9] Length = 815 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 177/577 (30%), Positives = 292/577 (50%), Gaps = 23/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + I + + + I+A +L +R +++ K FLNP ++ L P +L Sbjct: 9 YRWILKESK-NSQLSQEIQKTYGLSKIIADMLASR-LNLHEVKSFLNPDLKDLH-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + + I I+GDYDVDG + A++ L + YIP+R+V+GY Sbjct: 66 RGIKEAKELIQQHIASKDLITIYGDYDVDGITATAILYLTLKKLGAKLDYYIPERLVEGY 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LI++VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 126 GINEEAIDKIAERGTKLIVSVDCGITSVKEVEKAKILGIDVIITDHHSIPKEIPQADVVI 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ L GV F + + + LD+V++ T+ D+VP Sbjct: 186 NPHLPGIEYPFCDLAGVGVAFKLSQALI-----------GEEAHKFLDIVSIGTIADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKALI+ + I ++G+++ P +NA GR+ + Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLENVEIDEYHVGFILAPRLNAAGRLKSA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS +E+E +A L+ N NR+ +E+ +L+QA KV + D+ + VIV+ Sbjct: 295 EAAVRLLISHSKEEVEKIAEYLNQENLNRQQIENQILQQAIKKV-EETVDLNREKVIVLW 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WHPG++G++A+R+ E+F RPS IS E+ +G GSGRSIEGF++ K + + + L Sbjct: 354 DENWHPGVIGIVASRITERFHRPSILISLGEE-EGKGSGRSIEGFNLYKALEYC--KDYL 410 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P KI+ + ++I + Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKAKINEYADTVLSELDLIPSLKIEAKVKNEKIDIEIAK 470 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + I +N + + + + F Sbjct: 471 QVQKLKPFGSNNPRPNFLFEGLTVTKIFDLNSGRHKKIIAQKGKFVYELMLFDTAEKRND 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G + V G + +N W G + + V D Sbjct: 531 ----IKIGDIIDVVGSVEINTWNGIESVIINVKDLRV 563 >gi|297544505|ref|YP_003676807.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842280|gb|ADH60796.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 815 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 177/577 (30%), Positives = 292/577 (50%), Gaps = 23/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + I + + + I+A +L +R +++ K FLNP ++ L P +L Sbjct: 9 YRWILKESK-NSQLSQEIQKTYGLSKIIADMLASR-LNLHEVKSFLNPDLKDLH-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A I Q I + + I I+GDYDVDG + A++ L + YIP+R+V+GY Sbjct: 66 RGIKEAKELIQQHIASKDLITIYGDYDVDGITATAILYLTLKKLGAKLDYYIPERLVEGY 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++K G +LI++VDCG TS ++ A GIDVI+ DHH + E A ++ Sbjct: 126 GINEEAIDKIAERGTKLIVSVDCGITSVKEVEKAKILGIDVIITDHHSIPKEIPQADVVI 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP+ L GV F + + + LD+V++ T+ D+VP Sbjct: 186 NPHLPGIEYPFCDLAGVGVAFKLSQALI-----------GEEAHKFLDIVSIGTIADIVP 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGES 314 L+G NR V +GL N GLKALI+ + I ++G+++ P +NA GR+ + Sbjct: 235 LLGENRIIVKEGLKRLNETQNIGLKALIKASGLENVEIDEYHVGFILAPRLNAAGRLKSA 294 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 RLLIS +E+E +A L+ N NR+ +E+ +L+QA KV + D+ + VIV+ Sbjct: 295 EAAVRLLISHSKEEVEKIAEYLNQENLNRQQIENQILQQAIKKV-EETVDLNREKVIVLW 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WHPG++G++A+R+ E+F RPS IS E+ +G GSGRSIEGF++ K + + + L Sbjct: 354 DENWHPGVIGIVASRITERFHRPSILISLGEE-EGKGSGRSIEGFNLYKALEYC--KDYL 410 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGH MAAG+ +E+ N ++A ++ L P KI+ + ++I + Sbjct: 411 IKYGGHEMAAGINIEKNNLEIFKAKINEYADTVLSELDLIPSLKIEAKVKNEKIDIEIAK 470 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++ P+G+ NP P F F + I +N + + + + F Sbjct: 471 QVQKLKPFGSNNPRPNFLFEGLTVTKIFDLNSGRHKKIIAQKGKFVYELMLFDTAEKRND 530 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 G + V G + +N W G + + V D Sbjct: 531 ----IKIGDIIDVVGSVEINTWNGIESVIINVKDLRV 563 >gi|312873985|ref|ZP_07734021.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 2052A-d] gi|311090534|gb|EFQ48942.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 2052A-d] Length = 761 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 163/573 (28%), Positives = 278/573 (48%), Gaps = 30/573 (5%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80 ++ + + K+ + I A++ R ++ D DF LN L DP + D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFFMHDMKK 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 63 TVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLE 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N Sbjct: 123 RYQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYP 182 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 183 NQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEG 231 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL Sbjct: 232 HIIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVN 291 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 292 LLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFH 349 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GG Sbjct: 350 EGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGG 408 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A GL++++ + +L + F+ + + + D LN + + + + Sbjct: 409 HEFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKV 465 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 GP+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 466 GPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YL 518 Query: 558 MQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 519 DTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|220929372|ref|YP_002506281.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium cellulolyticum H10] gi|219999700|gb|ACL76301.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium cellulolyticum H10] Length = 576 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 174/591 (29%), Positives = 278/591 (47%), Gaps = 32/591 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ + ++++ I +++ R++VNR + ID A+ F+ + DP Sbjct: 2 QKWILRNPKFDF---KKMSKELGISELLCRIIVNRGIKDIDNARKFIKAD-NHGLYDPRQ 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D K I + I N++KI I GDYDVDG S ++ + + C + IP RI+DG Sbjct: 58 MKDLVKGVSIIQEKIKNNKKIRIIGDYDVDGVVSTYILYKAFARCGAVVDYAIPHRILDG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N SL+EK +N+G IIT D G + + +QYA G+ VIV DHH V A A+ Sbjct: 118 YGINNSLIEKALNDGIDTIITCDNGIAAKEQIQYARESGMTVIVTDHHDVPDTIPEADAI 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ + D LC AGV F + ++Y + + + VA+ATVCDVV Sbjct: 178 IDMKQPDCQYPFKLLCGAGVAFKFIQVLYEEM-----CIPREEESEFYEFVAIATVCDVV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL V N GL AL+++ I I+ +LG++IGP INA GR+ Sbjct: 233 DLTDENRILVRQGLNVISDTKNIGLCALLQKTGILGKNISVYHLGFIIGPCINASGRLDW 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G LL++DD +E LA +L LN R+ M +E + + ++ V VV Sbjct: 293 AMKGLELLLTDDEKEAMALATELYELNNERKHMTVKGVEDTIETI--ENSSLKSDRVFVV 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 H I G++A +++E++ P+F ++ E+ GSGRSIE +++ + +S E + Sbjct: 351 YKPDIHESIAGIIAGKVRERYNVPTFILTSGENCV-KGSGRSIEEYNMFEELSKCKE--L 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 K GGH MAAG +++ L + + ID + SA+NI Sbjct: 408 FTKFGGHPMAAGFSLDADKVDILRERINSI--TTLTDDDLIAKVYIDAHIPLSAINIRTA 465 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-LQAIAF------ 546 + L PYG GN P+FA N ++ V + Q + + I F Sbjct: 466 EELNYLEPYGKGNSKPLFAEKNISIKRAGVFGNERKVLKLRLQGGTSFIDCIYFGDIDEF 525 Query: 547 ------RVYGTPLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R T L K ++ + ++ +N + G K Q+ + Sbjct: 526 DAYVSERFGNTELQNMYKGRTNKIKLDMIFNIEINEYNGYKNVQVVLQYYR 576 >gi|197303670|ref|ZP_03168707.1| hypothetical protein RUMLAC_02397 [Ruminococcus lactaris ATCC 29176] gi|197297190|gb|EDY31753.1| hypothetical protein RUMLAC_02397 [Ruminococcus lactaris ATCC 29176] Length = 570 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 168/584 (28%), Positives = 284/584 (48%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + + N I +K+ + ++AR++ NR V + + +LN + L D ++ Sbjct: 3 KWFINMKKADFN---GIARKYGVSTVIARIMRNREVRTDEEINLYLNGTPEDLY-DGRLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + A + + I +KI I GDYD+DG S ++ + L + + IP RI DGY Sbjct: 59 KDMECAVSILKEKIAEEKKIRIIGDYDIDGVNSTYILQKGLELAGADVDTDIPHRIKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190 G N +L+++ +G I+T D G + + + Y +G+ VIV DHH+VK +E Sbjct: 119 GLNRALVDRAYQDGVDTILTCDNGIAAIEEIAYGKEKGMTVIVTDHHEVKFKEENGVRIY 178 Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+++P++ D LC AGV + ++ ++ L D L++ VA Sbjct: 179 QIPAADAVIDPHQKDCNYPYKELCGAGVAYKLVRVLLEELEMDPAKAEY-----LIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +AT+ DVV L G NR +V GL + ++ N GLKAL E I + ++G++IGP I Sbjct: 234 IATIGDVVNLTGENRIFVRTGLEMLKKTKNEGLKALFECTGIDVENLNTYHIGFVIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + +E M+A L LN++R+ M +E+A + + + Sbjct: 294 NACGRLDTAKRALELLNAPGRREAVMMAEDLKALNESRKEMTEKGVERAVEMI--ETSAL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+VV H I G++A RLKE++ RP+F ++ E+G GSGRSIE +D+ + Sbjct: 352 KEDCVLVVYLPDCHESIAGIIAGRLKERYYRPTFVLTKTENG-AKGSGRSIEAYDMFAEM 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + E + + GGH +AAGL++ G + A + ID L Sbjct: 411 NRCAE--LFTRFGGHKLAAGLSLPEEKIGLFRKKINELA--QLTEEDMQERVSIDLCLPF 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 ++ LI L+ P+G GN P FA N + R+ L+ ++ + Sbjct: 467 EYIDENLIAELKRLEPFGMGNEKPKFAERNLSVIDPRIFGKNRNVLKCRLRNERGMQMDG 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 I F L + + K M +T + +N + G + QL ++ Sbjct: 527 IYFGDVEDCLK---VMEQRKVMPLTFYPKINEYMGKRSIQLEIV 567 >gi|116872954|ref|YP_849735.1| single-stranded-DNA-specific exonuclease RecJ [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741832|emb|CAK20956.1| single-stranded-DNA-specific exonuclease RecJ [Listeria welshimeri serovar 6b str. SLCC5334] Length = 783 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 175/593 (29%), Positives = 284/593 (47%), Gaps = 30/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A+ + ++ I +A++L+ R ++ F +P DP Sbjct: 4 SKYLWNIEEVAED--KAIHLAEQLKIALPLAKLLLKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLLAEMDLAVARIKEAIKLNEQILVYGDYDADGVTSIAVLMKTLKHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIPAFDMAKTQGVDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAI 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLAHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLREGANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMETIEAK---ESLGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS+E F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGVYNRPAIVLGIDPVTGVAKGSGRSVEAFHLYEA--LDKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L QK A + P KI+ L + +++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPADNLAELDTLLQKEAS-YLSEADFRPSLKIEEKLKLTDISV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF-ESQDSETLQAIAFR 547 + I LE P+G NP P+F L+ + + HL+ E + L AI F Sbjct: 464 SFITQLEKLAPFGMDNPKPIFLLEKMNLKGTKRIGADKTHLKTLLQEDESEVALDAIGFG 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 524 VGDL----VEKISPSAAVDVVGELSINEWNNIKKPQLRLMDMDVPHWQLFDVR 572 >gi|30248041|ref|NP_840111.1| recJ: single-stranded-DNA-specific exonuclease [Nitrosomonas europaea ATCC 19718] gi|30179926|emb|CAD83921.1| recJ: single-stranded-DNA-specific exonuclease [Nitrosomonas europaea ATCC 19718] Length = 587 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 164/586 (27%), Positives = 269/586 (45%), Gaps = 36/586 (6%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 E A I H P ++AR+ R ++ L + M L + + A Sbjct: 8 EFPAHAYEILSAHGFPSVLARIFAARGINHPEQ---LETTFAR-MASFEQLKNIQRIAVL 63 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + AI +++++ DYD DGA + A+ +R L +P+R GYG P ++ Sbjct: 64 LADAIAAKKRLLVIADYDTDGATACAVALRALRQFGAMVEYLVPNRFEYGYGLTPEIVRL 123 Query: 145 FINE--GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 ++ ++ITVD G S + ++ A G+ V + DHH A +VNPN+ Sbjct: 124 AADQVPPPDILITVDNGIASVEGVEEANRLGMQVFITDHHLPGDRLPDAAVIVNPNQPGC 183 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGL 259 H+ GV+F V++ + LR+ + +L SLLDLVAL TV DVV L G Sbjct: 184 SFPDKHIAGVGVIFYVMLALRAELRERSAFTATGKEPNLASLLDLVALGTVADVVRLEGT 243 Query: 260 NRAYVVKGLMVARRQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLG 317 NR V +GL R G+ AL + +T LG+++ P +NA GR+ + +LG Sbjct: 244 NRILVQQGLQRIRNGYCCAGIHALFKAAGRDFSRVTTYELGFILAPRLNAAGRLDDMSLG 303 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI------ 371 L+++D LA +LD LN+ RR +ES M ++A K+ D + Q+ Sbjct: 304 IECLLTEDESHALRLASELDELNRQRREIESGMRDEAMDKLDDVIDLLNQSDTPADNGKQ 363 Query: 372 -----VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + WH G++GL+A+R+K++ RP + +G+ GSGRSI G + + Sbjct: 364 SVYSLCLYDPAWHQGVIGLIASRVKDRLHRPVIIFAQGNEGEIKGSGRSIPGLHLRDALD 423 Query: 427 FA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 G++VK GGHAMAAGLTV +F + F++ A +++ V + DG L Sbjct: 424 LVAKRYPGLIVKFGGHAMAAGLTVYEQHFEQFRTAFEQVAQSLLTPADLIQVIETDGELA 483 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQA 543 + + + L L + +G G P P F ++++ R+V HL++ ++ Sbjct: 484 ETDLTLELAQYLTN-QVWGQGFPEPSFNGC-FRVENQRIVGEKHLKLKLRKTGAAQVYDG 541 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 I F F + + + +N + GS R QL + Sbjct: 542 ILF---------FHTERLPTEIDAVYRVQINEYNGSTRMQLLLEHW 578 >gi|146295896|ref|YP_001179667.1| single-stranded-DNA-specific exonuclease RecJ [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409472|gb|ABP66476.1| exonuclease RecJ [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 803 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 177/577 (30%), Positives = 296/577 (51%), Gaps = 22/577 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RWV + + + I + I + +VL NR + D + FL P+I+ L +P + Sbjct: 6 KRWVLKECENFDDFDIQIDGR-KIRPQIIKVLKNRGIVQKDDIEKFLAPAIKNLH-NPFL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + AI + ++++I+GDYD DG S L+ L + + YIP+R DG Sbjct: 64 LNDMKEAINIVHNAILHKKRVLIYGDYDCDGVTSTYLLYSNLKKF-LPTSYYIPNRFKDG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++++ + ++ITVD G ++ + ++Y +G VIV DHH+ K + A A+ Sbjct: 123 YGLNLDILKRL-EDTFDILITVDTGISAINEIEYLKQKGKIVIVTDHHEPKDKLPIADAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D L GV F +L + L L LD+VA+ T+ DV+ Sbjct: 182 INPKRRDSTYPFRDLAGVGVAFKLLHAL-------KLSGLEIKLSKYLDIVAIGTIADVM 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIG 312 PL+ NR + GL + + N GLK LIE + ++ ++IGP +NA GRI Sbjct: 235 PLVDENRIFAKFGLKLLKYTRNIGLKKLIEVAGLSSKEELKPFDVSFIIGPRLNAAGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++NL LL+SD E E +A +LD N+ R+ +E +++A K++T DI + + V Sbjct: 295 DANLAMSLLLSDSLVEAEKIARRLDEENRKRQEIEEKTIKEA-QKIITLNKDILRKKIFV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WHPG+VG+ ++++ EK+ RPS +F ++G GSGRSI+GF++ + + Sbjct: 354 LSSQSWHPGVVGIASSKITEKYYRPSLLFTFTDEGILKGSGRSIKGFNLFEALKNC--SD 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL+K GGH AAGL++ NF +L + A +I P +ID VL+ + ++ L Sbjct: 412 ILLKFGGHEHAAGLSLVSDNFDKLDEILNAIAQE-YHFMIFKPAVEIDLVLSLNEIDDEL 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ID + P+G GNP P F N +++ R + + F + + + F + Sbjct: 471 IDQVYLLEPFGVGNPEPTFLIKNIIVENFRFMGEDNKYYKFFTGNGTKYDVVCF----SN 526 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + K++ + L N + ++R Q ++D Sbjct: 527 LEDEDELVTMKKVDIVCKLEKNIFNSTRRNQFNLIDI 563 >gi|114330162|ref|YP_746384.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosomonas eutropha C91] gi|114307176|gb|ABI58419.1| exonuclease RecJ [Nitrosomonas eutropha C91] Length = 589 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 162/575 (28%), Positives = 269/575 (46%), Gaps = 36/575 (6%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 H +P ++AR+ R + + L+ + M L + + A + AI +++ Sbjct: 21 AHGLPSVLARIFAARGI---EKPNQLDTTFSH-MASFQQLKNIRQIAVLLADAIAAKKRL 76 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ--LI 153 ++ DYD DGA + A+ +R LS + +P+R GYG P +++ N ++ Sbjct: 77 LVIADYDTDGATACAVALRALSQFGAVVDYLVPNRFEYGYGLTPEIVQLAANCNPPPAIL 136 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 ITVD G S + + A G+ V + DHH + A +VNPN+ H+ G Sbjct: 137 ITVDNGIASVEGVAEANRLGMQVFITDHHLPGDQLPEAAVIVNPNQPGCDFPDKHIAGVG 196 Query: 214 VVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 V+F V++ + LR+ +L +LLDLVAL TV DVV L G NR V +GL Sbjct: 197 VIFYVMLALRAELRERGSFIATGKEPNLANLLDLVALGTVADVVRLEGTNRILVQQGLQR 256 Query: 271 ARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 R G+ AL + +T LG+++ P +NA GR+ + +LG L+++D Sbjct: 257 IRSGHCCAGIHALFKVAGRDFSRVTTYELGFILAPRLNAAGRLDDMSLGIECLLAEDESR 316 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVL------TQCDDIQQASVI-----VVEGDR 377 LA +LD LN+ RR +E+ M ++A +K+ Q D V + Sbjct: 317 ALHLASELDELNRQRREIEAGMQDEAMSKLEGVINMLDQFDAPANNRVHPVYSLCLYDSD 376 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILV 435 WH G++GL+A+R+K++ RP + +G+ GSGRSI G + + G++V Sbjct: 377 WHQGVIGLIASRIKDRLHRPVIVFAQGNNGEIKGSGRSIPGLHLRDALDLVTKRHPGLIV 436 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGHAMAAGLTV +F + F++ A +++ + V + DG L + + L Sbjct: 437 KFGGHAMAAGLTVHAQHFEQFRAVFEQVAQSLLTPVDLIQVIETDGELEERDLTLELAQY 496 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL-QAIAFRVYGTPLG 554 L + +G G P P F ++++ R+V HL++ + + I F Sbjct: 497 LTN-QVWGQGFPEPSFNGR-FRVENQRIVGEKHLKLKLRKAGASRIYDGILF-------- 546 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F + + + +N + GS R QL + Sbjct: 547 -FHTERLPAEIDAVYRVQLNEYNGSTRMQLLLEHW 580 >gi|77164696|ref|YP_343221.1| RecJ exonuclease [Nitrosococcus oceani ATCC 19707] gi|76883010|gb|ABA57691.1| exonuclease RecJ [Nitrosococcus oceani ATCC 19707] Length = 574 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 272/565 (48%), Gaps = 25/565 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I I+ RV R + A D L+ ++ L P P +L++ A +++A+ +I++ Sbjct: 20 IHPILRRVYGARGI---KAPDELDYTLERL-PSPWLLSNIKMAVTLLMEALVRDWRILVV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITV 156 D+D DGA S A+ +R L + +P+R + GYG P+++ E LIITV Sbjct: 76 ADFDADGATSCAVAVRALRLMGAHKVDYLVPNRFIHGYGLTPAIVAEAMARGQPDLIITV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S +Q A I V++ DHH A A+VNPN +D L GV+F Sbjct: 136 DNGISSLAGVQAARAANIRVLITDHHLPGISLPAANAIVNPNLPNDPFPSTCLAGVGVIF 195 Query: 217 LVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 V++ + LR+ L LLDLVAL TV DVVPL +NR V +GL R Sbjct: 196 YVMLALRAHLREQGWFIRRDEQEPALAPLLDLVALGTVADVVPLDQINRILVAQGLARIR 255 Query: 273 RQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + +T +LG+ +GP +NA GR+ + +LG L++D + + Sbjct: 256 QSRCCAGIQALVACARRPLETLTTSDLGFAVGPRLNAAGRLEDMSLGIACLLTDSLELAQ 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV--IVVEGDRWHPGIVGLLAA 388 A +LD LN+ RR +ES M EQA + ++ + + + WH G++GLLAA Sbjct: 316 QQANQLDGLNRERREIESTMQEQAVTHLENLVFQGEERAPLGYCLFDESWHQGVIGLLAA 375 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 R++E+ RP A + + + GS RSI G I + +L K GGHAMAAGL Sbjct: 376 RIRERVYRPVIAFAPHDSEELKGSARSIPGLHIRDALDRVATCYPDLLTKFGGHAMAAGL 435 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++ R + F + ++ V DG + ++ + + L + GP+G G Sbjct: 436 SLRRGHLEPFRVAFLEVLETLLDKEALEDVILSDG--SLEQWDLEMAETLRNGGPWGQGF 493 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P+F ++ R+V AHL++T + D + L+ IAFR + G ++ Sbjct: 494 PEPLFDG-VFRVAGFRIVGEAHLKLTLTTLDGRQQLEGIAFRCLPPD-----GFALGIKI 547 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590 + L VN +RGS+ QL V Sbjct: 548 RLAYRLDVNIYRGSRTAQLMVEHLE 572 >gi|193734240|gb|ACF19890.1| RecJ [Kingella kingae] Length = 570 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 281/582 (48%), Gaps = 29/582 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + + A Q P ++A++ R+V + D L S+ L+P L +C Sbjct: 5 KQIATRPVVAEVQAALQNAGTPPLLAQLYAARHV---QSADELGDSLSQLIPY-TQLKNC 60 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 + AA+R+ AI +KI+I DYD DGA + ++ ++ L + + ++P+R GYG Sbjct: 61 EAAAQRLATAIEQRQKILIIADYDADGATACSVGIKGLRNMGAVVDFFVPNRFEHGYGLT 120 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P L + GAQLI+TVD G +S + + A GID +V DHH S P +VNPN Sbjct: 121 PELADIAAQMGAQLILTVDNGISSQEGVARAKALGIDTVVTDHHTAGSSI-PDCIIVNPN 179 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVV 254 + L GV+F VL+ + LR +L +LLDLVAL TV DVV Sbjct: 180 QRGCDFPSKSLAGVGVIFYVLMALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADVV 239 Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIG 312 PL NR V +GL R + G++AL E + ++G+ +GP INA GR+ Sbjct: 240 PLDHNNRILVSQGLKRIRAGKMSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRLD 299 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + ++G L+SD+ + +A +L+ LNQ R+ +E ML++ A Q + Sbjct: 300 DMSIGISCLLSDNLPYAQQIASELNQLNQTRQEIEQGMLQEVLALCPNVLPSSQT--TLS 357 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430 V +++H G+VG++A+RLK++F RP F + +DG+ GSGRSI G + + Sbjct: 358 VYHEQFHQGVVGIVASRLKDRFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAKRC 417 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++VK GGHAMAAGLT+ + F C F+ +V I + + DG L+ S + + Sbjct: 418 PDMIVKFGGHAMAAGLTLRKHRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDITL 477 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRV 548 D++ +G P P F+ + + + H + + +D +A+ +R Sbjct: 478 EQADLISR-QVWGQNFPPPSFSDE-FDVVRQQFMGKEQKHKKAWLQ-KDGYEFEAMFWRC 534 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + VN W G++ QL V Sbjct: 535 EDE---------LPNKIRIVYRPTVNEWNGNQELQLYVDYWE 567 >gi|217076672|ref|YP_002334388.1| single-stranded DNA-specific exonuclease [Thermosipho africanus TCF52B] gi|217036525|gb|ACJ75047.1| single-stranded DNA-specific exonuclease [Thermosipho africanus TCF52B] Length = 975 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 160/561 (28%), Positives = 300/561 (53%), Gaps = 19/561 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 +W A I+++ ++P + +++LV R + + + FL PS + L P +L Sbjct: 2 KWELKKF--NKELAQKISEELSLPFLTSQLLVTRGYTDFEEIEKFLYPSKKHLR-SPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA R +++A + ++GDYDVDG VA ++ FLS + YIP+R+ +GY Sbjct: 59 KDMDKAVRYLLEAREKKLPVFVYGDYDVDGITGVATLVTFLSKYGWKVDYYIPNRLDEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G P ++E++ +G +++++VDCG TS++A++ A G+ VI+ DHH +K + A+A+V Sbjct: 119 GIQPQVVEEYFKKGYRVLLSVDCGITSFEAVEKARELGMYVIITDHHTIKDKIPEAHAVV 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D+ GV + ++ + + L ++ +LD+VAL T+ D+V Sbjct: 179 DPKREDETYPFRDFAGVGVAYKLISAVAQELGIPG-----DEVDEVLDIVALGTIADMVD 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L+ NR V +GL GL L++++NI++ I+++++GY + P +NA GR+ + Sbjct: 234 LVDENRYIVKEGLKRLNATNRIGLLQLMKKLNITN-ISSQDIGYRLAPKLNAAGRLYSAE 292 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 +L+++D+ E LA L N R+ +E+ + ++A K+ + I+ +++V G Sbjct: 293 DAYKLIMTDNISSAEQLAEMLMGYNFTRQEIENKIFKEAIEKI--EHSKIKDLPILIVSG 350 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 D WH G++G++A +L +K+ +PS +S E+G G GSGRS++G +I + + Sbjct: 351 DNWHAGVLGIVATKLVQKYNKPSLVVS-LENGIGRGSGRSVDGVNI--LEVLSDFASYFE 407 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH MA G +++ L + + N + + +ID +L +N +ID Sbjct: 408 EFGGHPMAIGFSIKNEKIPELIEAISEKFGNTFFEVDSK--IEIDSILEVDDINDEIIDS 465 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G GNP PVF + + IR ++++M + ++ +T++ I F + Sbjct: 466 LRYLEPFGHGNPEPVFLIKDSIVDRIRFFGNTNSNVRMILKGKNKQTVEGIGFGLRKNYY 525 Query: 554 GEFLMQSRGKRMHVTGHLCVN 574 +Q+ + V ++ N Sbjct: 526 DIPAIQAFLTSLDVVANIRKN 546 >gi|260550206|ref|ZP_05824419.1| ssDNA exonuclease [Acinetobacter sp. RUH2624] gi|260406734|gb|EEX00214.1| ssDNA exonuclease [Acinetobacter sp. RUH2624] Length = 566 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 172/559 (30%), Positives = 259/559 (46%), Gaps = 21/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + + P L D A + Q I +KI+I Sbjct: 20 GVPPFIAEILARRGVQSEQELE----LKLKYLLAPE-LKGLDAAVALMDQVIDEQKKIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALMM L + +PDR GYG P++ E + L+ITV Sbjct: 75 VGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAYHTYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ + A G+ VI+ DHH E A A+VNPN+L L GV F Sbjct: 135 DNGISSHTGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + + + K + LDLVAL T DV L NR V G+ + Q Sbjct: 195 YVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVDAGVKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + I A++LG+++GP INA GR+ +G L++D + +A Sbjct: 253 RVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLADSMETAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN +RR +E M +QA + + Q +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNQLNIDRRQVEGEMKQQALSALDNLQLSQQDIPPALVLFEENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RP+ + +EDG GS RSI+G I + ++ GGHA AAGLT+ + Sbjct: 373 FHRPTIVFAPDEDGVHIKGSARSIDGVHIRDTIEQVAEQYPELVSHFGGHAAAAGLTIRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF F + I DG L SA+ + ++ +E GP+G P P Sbjct: 433 ENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLNTLNWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + K+ R + HL++ D + AIAF G F +H+ Sbjct: 492 FEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNAA----GRFEFDPMRDHVHLVYE 545 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + N + G+ QLR++ Sbjct: 546 IDRNVFNGNVSLQLRIVYL 564 >gi|325267464|ref|ZP_08134120.1| single-stranded-DNA-specific exonuclease RecJ [Kingella denitrificans ATCC 33394] gi|324981105|gb|EGC16761.1| single-stranded-DNA-specific exonuclease RecJ [Kingella denitrificans ATCC 33394] Length = 569 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 181/578 (31%), Positives = 282/578 (48%), Gaps = 28/578 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 E N Q+ P ++A++ +R V L+ ++ L+P LT+C AA+R Sbjct: 11 EIDNAIQQALQEKGAPPLLAQLYASRQVHSADE---LDDALNRLIPY-TQLTNCVAAAQR 66 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + QAI +EKI+I DYD DGA + ++ ++ L + ++P+R GYG P L + Sbjct: 67 LAQAIEQNEKILIIADYDADGATACSVGIKGLQSMGATVDFFVPNRFEHGYGLTPELADI 126 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 + GAQLI+TVD G +S+D ++ A GID IV DHH +P +VNPN+ Sbjct: 127 AHDLGAQLILTVDNGISSHDGVERARQWGIDTIVTDHHHAG-SHVPNCLIVNPNQRGCTF 185 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNR 261 +L GV+F VL+ + LRQ L LLDLVAL TV DVVPL NR Sbjct: 186 PSKNLAGVGVIFYVLIALRAELRQRGWFHAGLPEPKLDLLLDLVALGTVADVVPLDHNNR 245 Query: 262 AYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL R E + ++G+ +GP INA GR+ + +LG Sbjct: 246 ILVSQGLKRIRAGKMSFGIQALFQEARRDARKAQPFDMGFALGPRINAAGRLDDMSLGIH 305 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 L+SD+ + +A +L+ LNQ R+ +E ML+ A ++ + Q + V + +H Sbjct: 306 CLLSDNLDSAQQMAHELNQLNQTRQEIEQDMLQNVLALCPSELPEQQT--TLAVFHEDFH 363 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKG 437 G+VG++A+RLKE+F RP+F + +DG+ GSGRSI G + ++ +++K Sbjct: 364 QGVVGIVASRLKERFYRPTFVFAPSDDGEIRGSGRSITGVHLRDVLDSVAKRCPDMIIKF 423 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHAMAAGLT+ F C F++ V + DG L+AS + + +L Sbjct: 424 GGHAMAAGLTMHAHRFEEFCTIFEQVVREWVDEDTLAQTYLTDGNLHASDITLEHAHLLN 483 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 +G G P P F + + + H + ++ +A+ +R Sbjct: 484 -GQVWGQGFPAPSFHDE-FSVLRQQPMGADKKHTKAWLR-KEGREFEAMFWRCD------ 534 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 S +++H+ VN WRG++ QL V PV Sbjct: 535 ---VSLPEKIHIVYRPTVNEWRGNEELQLYVDYWEPVT 569 >gi|295693123|ref|YP_003601733.1| single-stranded-DNA-specific exonuclease recj [Lactobacillus crispatus ST1] gi|295031229|emb|CBL50708.1| Single-stranded-DNA-specific exonuclease RecJ [Lactobacillus crispatus ST1] Length = 757 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 162/570 (28%), Positives = 269/570 (47%), Gaps = 30/570 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W QE A + +K+ + I A + R ++ D DF + + DP ++ Sbjct: 2 KWQERTAQE---LAPDLVEKYQLSPIAATLFALRGINTDEKLDFWFNATEDNLADPALMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M LS + + +IPDR DGYG Sbjct: 59 DMDKAIERINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + + +G +LIITVD G T + ++YA +DVI+ DHH + E+ AYA V+ Sbjct: 119 PNLARYQDIVADGTKLIITVDNGVTGIEEVKYAQEHSVDVILTDHHTFQEEKPAAYATVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLEMLNQTERPGLRALIKNAGLTLGGINETDVGFNIAPRLNAVGRLDNAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A +++ LN R+ + + + E+ + Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADRIEELNNQRKELTTQVYEKCMDLIQKNSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ G+ GSGRS GF++ ++ +++ L Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNAAGEIKGSGRSFTGFNLFNALNP-IKDQYLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L D F+ D L ++ + Sbjct: 405 KFGGHDFACGLSMEEEKIAPLRDQFENNFQVEGGLETK----DYDMELPMKGLSPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+P P+F+ + + + H++ T Q L + F L Sbjct: 461 INQVGPFGTGDPQPIFSISDPTITHFFKMGKDKNHVKFTVNKQGGN-LAVVGFN--KGFL 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 L+ K L +N +R Q Sbjct: 518 NNNLLPFISKIF---VQLSLNTYRKQISLQ 544 >gi|224476733|ref|YP_002634339.1| putative single-strand DNA-specific exonuclease [Staphylococcus carnosus subsp. carnosus TM300] gi|222421340|emb|CAL28154.1| putative single-strand DNA-specific exonuclease [Staphylococcus carnosus subsp. carnosus TM300] Length = 758 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 159/579 (27%), Positives = 280/579 (48%), Gaps = 30/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 F+W I+ I + + IV ++L ++N++ + L S + DP Sbjct: 6 FKWDLQQNTNQISD--EIASEMKLTPIVRKILESKNITDKQDIEALLKKS--TIKHDPYT 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 ++D KA RI +AI N E+I+I+GDYD DG S +++ L YIP+R +G Sbjct: 62 MSDMKKAIERINKAIDNHERILIYGDYDADGVTSTTILVSVLQELGAEVGWYIPNRFTEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + + +EG LIITVD G + ++ A G+DVI+ DHH++ A+A+ Sbjct: 122 YGPNEAAFKNAYDEGINLIITVDNGIQGHHEIKTAQELGMDVILTDHHEIGETLPEAFAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P + +L AGV + + L A+ T+ D+V Sbjct: 182 VHPMHPEFNYPFKYLSGAGVALKIAQALLDH-----------PSPYYTALAAIGTIADLV 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L NRA V GL + + P ++AL+ + IT E +G++IGP +NA GR+ ++ Sbjct: 231 SLTDENRAIVQDGLDILNQTQFPSIQALLNNASYKDTITEETIGFVIGPRLNAVGRLDDA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +L + LL+SD+ +E E LA +++ NQ R+ + + ++A Q ++ Q +V+ Sbjct: 291 SLAAELLMSDNDEEAEFLAEQVEHFNQERKDIVKEISDEAVLMAAEQVENGNQ--FLVLA 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G+ A+++ E FG P+ ++ + GS RSIE + + E + Sbjct: 349 QENWHEGVLGIAASKVVETFGLPTIILNIDTVQNFAKGSARSIEQVSMYDI--LDKERTL 406 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH MAAG+T+ N +L + I +P K+D +L+ + + + I Sbjct: 407 ITKFGGHHMAAGMTLPIENIEKLREALNVHMAEISKEKDLSPRKKVDLLLDEAEITVKNI 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 ++ P+G +P+F N K+ + + HL+MT +Q++ ++ Sbjct: 467 RDIQKLRPFGTDFTSPLFQLNNAKIIQAKGIGQEGKHLKMTIGD---SKIQSLYWQHGEY 523 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + +++ G L +N W G++ Q V D + Sbjct: 524 ----ANQIEPNQPINMIGTLQINEWNGNQSPQFMVQDMA 558 >gi|225024577|ref|ZP_03713769.1| hypothetical protein EIKCOROL_01454 [Eikenella corrodens ATCC 23834] gi|224942728|gb|EEG23937.1| hypothetical protein EIKCOROL_01454 [Eikenella corrodens ATCC 23834] Length = 565 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 171/580 (29%), Positives = 257/580 (44%), Gaps = 28/580 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 V Q A+ P ++AR+ RNV L+ + L+P L + Sbjct: 4 VIRTRQADPEAEQALL-AAGTPPLLARLFAARNVRSP---AELHNHLASLLPY-QSLKNI 58 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 D AA R+ +AI E+I+I DYD DGA + A+ + L H +PDR GYG Sbjct: 59 DAAAERLARAIQEQERILIVADYDADGATACAVGIWGLRHMGAQVEFLVPDRFKHGYGLT 118 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P L + G QL++TVD G +S + A G+DVI+ DHH +P +VNPN Sbjct: 119 PQLADLAAERGTQLLLTVDNGISSTAGVARAQALGMDVIITDHHLPGDT-LPECIIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVV 254 + +L GV+F VL + +LR +L LLDLVAL TV DVV Sbjct: 178 QPGCAFASKNLAGVGVIFYVLTALRALLRTQQWFNPQRLPEPNLAELLDLVALGTVADVV 237 Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG 312 L NR V +GL + PG++AL + +LG+ IGP INA GR+ Sbjct: 238 TLDYNNRILVSQGLKRMQIGKTRPGIQALFQVAQRDMRQAKPFDLGFAIGPRINAAGRLE 297 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +G L+++D LA +L+ LN+ R+ +E ML++A A I Sbjct: 298 NMEIGIACLLAEDPDTAAELAEQLNELNRARQEIEQTMLQEALALADQIIVG--NGLSIT 355 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 WH G+VG++A RLK++F RP+ + + + GSGRSI + + + Sbjct: 356 AFHPDWHQGVVGIVAGRLKDRFHRPTIVFAPTGNSELRGSGRSIPSLHLRDAIDLVAKRH 415 Query: 433 I--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++K GGHAMAAGL++ +F R F+ ++ T F DG L+ +++ Sbjct: 416 PELILKFGGHAMAAGLSIREQDFPRFQQAFESVLTELLDQDALTRTFLTDGSLSPEEISL 475 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 + L + +G G P F ++ RVV H + T++A+ FR Sbjct: 476 HTAETLSN-QVWGQGFQPPCFYNQ-FEVLWQRVVGNGHKKAGLNC-GGHTVEAMFFRCAE 532 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++H N WR QL + Sbjct: 533 E---------LPAKIHTVYRPIANQWRNQYELQLHIDHWE 563 >gi|213420627|ref|ZP_03353693.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 514 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 166/518 (32%), Positives = 257/518 (49%), Gaps = 16/518 (3%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGY 135 D A + A +I++ GD+D DGA S AL + + + + +P+R DGY Sbjct: 2 GIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGY 61 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G +P ++++ GAQLI+TVD G +S+ + +A I VIV DHH A A++ Sbjct: 62 GLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAII 121 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVC 251 NPN D L GV F +++ + LR +L LLDLVAL TV Sbjct: 122 NPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVA 181 Query: 252 DVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGG 309 DVVPL NR +GL R + PG+KAL+E N + A +LG+ +GP +NA G Sbjct: 182 DVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAG 241 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + ++G LL+ D+ E +LA +LD LNQ R+ +E M +A + Sbjct: 242 RLDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLP 301 Query: 370 VI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 + WH G+VG+LA+R+KE+F RP A + DG GSGRSI+G + + Sbjct: 302 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 361 Query: 429 V--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 +++K GGHAMAAGL++E F + F + + + DG L+A+ Sbjct: 362 DTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAA 421 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIA 545 +++ + +L AGP+G P P+F +L R+V HL++ E L IA Sbjct: 422 EMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 F + T + + + + + L +N +RG++ Q Sbjct: 481 FNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQ 514 >gi|295426171|ref|ZP_06818836.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus amylolyticus DSM 11664] gi|295064148|gb|EFG55091.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus amylolyticus DSM 11664] Length = 756 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 164/578 (28%), Positives = 274/578 (47%), Gaps = 32/578 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + + +K+ + I A++ R ++ D +F + + DP ++ Sbjct: 2 KWNKRQAEALDSD---LIEKYQLSPIAAKLFSLRKINTDDKLNFWFNATENDLADPSLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI N EKI I+GDYD DG + +M L + + +IPDR DGYG Sbjct: 59 DMDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTDALGILGADVHYFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + +G +LIITVD G T D +QYA +DVI+ DHH + YALV+ Sbjct: 119 PNMERYHDIVADGTKLIITVDNGVTGVDEVQYAQQHDVDVILTDHHTFQENVPKPYALVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + LLDLV + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRKLME-----------DPMPELLDLVMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHVIVKRGLEMLNQTERPGLRALIKNAGLTMGSINETDVGFNIAPRLNAVGRLANAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + LL+SDD E + LA K++ LN R+ + + + + +++ Q+ + +V+ Sbjct: 288 MAVELLLSDDEAEAKKLADKVEELNDERKELTAEVYHRCMSQIKENSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRSI GF++ ++ ++ +L Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNKAGEIKGSGRSIPGFNLFDALNPL-KDSLLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++ L D F+K H D L + + Sbjct: 405 KFGGHDFACGLSLTENKINLLRDKFEKDFHVEGTLEEK----YYDFELPLKNLTPQTMAE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+PNP+F+ + ++ + H++ T E + L + F Sbjct: 461 INQVGPFGTGDPNPIFSIDSPQITHFFKMGKEKNHVKFTAEKGGGK-LDIVGFN------ 513 Query: 554 GEFLMQSRGKRMH-VTGHLCVNYWRGSKRCQLRVLDAS 590 EFL + + V L VN +R + Q + Sbjct: 514 KEFLNNNLLPFISEVFFQLAVNTYRNRVQLQGIMEGIQ 551 >gi|256843328|ref|ZP_05548816.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus 125-2-CHN] gi|256614748|gb|EEU19949.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus 125-2-CHN] Length = 757 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 158/571 (27%), Positives = 268/571 (46%), Gaps = 32/571 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W E A + +K+ + I A++ R ++ D DF + + DP ++ Sbjct: 2 KWQERTADE---LAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI + EKI I+GDYD DG + +M LS + + +IP+R DGYG Sbjct: 59 DMDKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T + ++YA +DVI+ DHH + ++ AYA V+ Sbjct: 119 PNMDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLEMLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A K++ LN RR + + + ++ + Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADKIEELNNKRRELTTEVYDKCMTLIHKNSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRS GF++ ++ +++ L Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNP-IKDQYLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L + F+ H D L + + Sbjct: 405 KFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKK----YDMELPMQGLTPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+ P+F+ N + + H++ T + L I F Sbjct: 461 INQVGPFGTGDTQPIFSISNPTITHFFKMGKDKNHVKFTVAKKGGN-LSVIGFNKG---- 515 Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQ 583 FL + + L +N +R Q Sbjct: 516 --FLNNNLLPFISQIFVQLSLNTYRNQVSLQ 544 >gi|304317001|ref|YP_003852146.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778503|gb|ADL69062.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 819 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 183/581 (31%), Positives = 292/581 (50%), Gaps = 25/581 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + WVS N I K+ + + +A+ +VNR ++LNP + +M P + Sbjct: 3 YNWVSKKIL-NENLVEKIKIKYKLKEYIAQTIVNRGYDDLKKVDEYLNPDL-NMMHSPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +KA+ I I + KI I+GDYDVDG +++ + L + N YIPDR+ +G Sbjct: 61 LDGIEKASSVIKYHIEKNNKITIYGDYDVDGITGTSILYKTLKKLGADVNFYIPDRLQEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +EK N G+ LIITVDCG TS +++A GI++IV DHHQV A + Sbjct: 121 YGINLNAIEKIYNLGSSLIITVDCGITSVIEVEHAKKLGIEIIVTDHHQVPDVLPDATCV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP+ + L GV F + + + D L LD+VAL TV D+V Sbjct: 181 INPHIKNCTYPYRELSGVGVAFKLCLALI-----------GDDALDYLDIVALGTVADIV 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR V +GL + + N GLKALI + I ++G+++ P +NA GR+ Sbjct: 230 PLTGENRIIVKEGLKMMKNSKNKGLKALINVSGLNNKDINTYHVGFVLAPRLNAAGRLES 289 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL +DD E +A L+ N R+ +E ML++A +V T+ D+ + IV+ Sbjct: 290 AVSCVNLLTTDDDIEANRIAEYLNSENIKRQELEKKMLDEAIVQVETKI-DLDKEKFIVL 348 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WHPGI+G++++R+ EK+ RPS IS D G GSGRSI+GF+I + +A Sbjct: 349 YSEDWHPGIIGIVSSRITEKYNRPSILISICGD-TGKGSGRSIKGFNIYDAIKYA--GDC 405 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH MAAG+T+++ D ++A + + + P +I+ + +++ Sbjct: 406 LIGFGGHEMAAGITIKKDEIESFKDKLNEYAESKLNDIDLIPTIEIETSIENETIDLEGA 465 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 + L P+G NP P + + ++ V HL+ ++ I F + Sbjct: 466 NQLSLLEPFGNSNPMPAYIINHLHVKQTYTVGNNKHLR-IIAQKNDMCYDIILFHMG--- 521 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 E G + + G++ VN W G K+ ++ D E Sbjct: 522 -SEANKFKEGYIIDIAGYINVNEWNGDKKVEIIAKDIKIKE 561 >gi|293381948|ref|ZP_06627911.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus crispatus 214-1] gi|312978231|ref|ZP_07789975.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus crispatus CTV-05] gi|290921487|gb|EFD98526.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus crispatus 214-1] gi|310894949|gb|EFQ44019.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus crispatus CTV-05] Length = 757 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 157/571 (27%), Positives = 268/571 (46%), Gaps = 32/571 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W E A + +K+ + I A++ R ++ D DF + + DP ++ Sbjct: 2 KWQERTADE---LAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI + EKI I+GDYD DG + +M LS + + +IP+R DGYG Sbjct: 59 DMDKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T + ++YA +DVI+ DHH + ++ AYA V+ Sbjct: 119 PNMDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLEMLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A K++ LN R+ + + + ++ + Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADKIEELNNKRKELTTEVYDKCMTLIHKNSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRS GF++ ++ +++ L Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNP-IKDQYLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L + F+ H D L + + Sbjct: 405 KFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKK----YDMELPMQGLTPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G G+ P+F+ N + + H++ T + L I F Sbjct: 461 INQVGPFGTGDTQPIFSISNPTITHFFKMGKDKNHVKFTVAKKGGN-LSVIGFNKG---- 515 Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQ 583 FL + + L +N +R Q Sbjct: 516 --FLNNNLLPFISQIFVQLSLNTYRNQVSLQ 544 >gi|222111928|ref|YP_002554192.1| single-stranded-DNA-specific exonuclease recj [Acidovorax ebreus TPSY] gi|221731372|gb|ACM34192.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax ebreus TPSY] Length = 574 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 183/578 (31%), Positives = 274/578 (47%), Gaps = 30/578 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 R + ++ + ++AR+ R + AK+ L+ ++ L+P P L +AA + Sbjct: 9 PPRVVWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLMGVRQAAALLA 64 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145 AI +++I DYD DGA + A+ +R L + +PDR+VDGYG S+ ++ Sbjct: 65 DAISQDRRLLIVADYDCDGATACAVGVRGLRLLGARHVQYLVPDRVVDGYGLTASIAQRV 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 GA ++ITVD G S + + A G+ V++ DHH SE A A+VNPN+ Sbjct: 125 HERGADVLITVDNGIASIEGVARAKALGLTVLITDHHLPGSELPAADAIVNPNQPGCGFE 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + GV+F VL+ + LR L LL LVAL TV DVV L NR Sbjct: 185 SKSIAGVGVMFYVLMALRAELRARGVFDKATQPKLEPLLPLVALGTVADVVRLDNNNRRL 244 Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R Q PG++AL + +P+ T + G+ +GP INA GR+ + LG L Sbjct: 245 VAQGLKRIRAGQMQPGIQALFDAAGRKAPVATTFDFGFALGPRINAAGRLADMTLGIECL 304 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380 ++DD LA +LD +N+ RR +E M EQA + D+ + I V +H Sbjct: 305 LTDDPARAADLARQLDAINRERRELEGGMREQALLLAESLFDEGEEPPPAISVFDPDFHE 364 Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434 G+VG++A+RLK+K RP+F + ++ + GSGRSI GF + + G++ Sbjct: 365 GVVGIVASRLKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVAKRHPGVI 424 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGHAMAAG TV +F F + A + A T + DG L L+D Sbjct: 425 LKFGGHAMAAGCTVAEEHFDLFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAELVD 484 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552 L +G G P F ++ S R+V HL + Q + + AI F Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSIKLLHQ-GQPVDAIWFGHTD-- 539 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +R + L VN WRG +R Q V Sbjct: 540 -------PLPERALLAFRLDVNEWRGERRVQFLVEGLE 570 >gi|51893577|ref|YP_076268.1| single-strand DNA-specific exonuclease [Symbiobacterium thermophilum IAM 14863] gi|51857266|dbj|BAD41424.1| single-strand DNA-specific exonuclease [Symbiobacterium thermophilum IAM 14863] Length = 853 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 174/586 (29%), Positives = 279/586 (47%), Gaps = 31/586 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 RW A ++++ +I + A+VL+NR ++ + A+ FL P R + DP + Sbjct: 8 KRW--RPEPADPAGARLLSRQLSISPVTAQVLINRGLTTPEAAQAFLTPG-RDRIHDPFL 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A I + + IM++GDYD DG + A ++ L YIPDR +G Sbjct: 65 LKDMREAVDLIRARLRSGGPIMVYGDYDADGVTATATLLLALRALGAEVAYYIPDRFREG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + G I+TVD G + Q A GI ++V DHH+ AL Sbjct: 125 YGLNAGALRSIRARGYDFIVTVDTGVAAVAEAQVARELGITLVVTDHHEPGPVLPDVPAL 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R D L GV F + + + + LLD+V L TV D++ Sbjct: 185 VNPRRPDCTYPFKGLAGVGVAFKLALALGA-----------PNAWDLLDIVTLGTVADMM 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL+ NRA V +GL PGL+AL++ + P+TA ++G+ +GP INA GR+ + Sbjct: 234 PLVDENRAIVREGLSRLGATHRPGLRALMQVAGVQPPVTAGHVGFALGPRINALGRMSSA 293 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 G LL+++D E LA +LD N+ R+ +E+A+LE+A A+ + ++ +V+ Sbjct: 294 EAGVELLLTEDPARAEELARRLDEENRARQEIEAAILEEALAQAAALPPE-EREYALVLA 352 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ WH G+VG+ A+R+ E + RP+ +S E + GS RSI GF + + + Sbjct: 353 GEGWHHGVVGICASRVLEVYHRPTILLS-IEGDEVRGSARSIPGFHMQRA--LLQMSELF 409 Query: 435 VKGGGHAMAAGLTVERVN-FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGHA AAGL++ + L + A + P ++D + ++ LI Sbjct: 410 TRFGGHAAAAGLSLRGRDLVPELRRRMNRLAAEWLRPEDLVPEQRVDAFVALDQIDEGLI 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSE---TLQAIAFRV 548 LE+ P+G GNP PV A ++ R + HL++ ++A+ + + Sbjct: 470 RELEALEPFGLGNPAPVLATDGLQVVDGRAIGRNGQHLKLFLRPDGDGAAAPVEAVGWNM 529 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 M G+R+ V +N + G R QL + D P G Sbjct: 530 A------VAMPEPGRRIAVAYEPEINTYMGRSRIQLVLKDMKPAAG 569 >gi|225568640|ref|ZP_03777665.1| hypothetical protein CLOHYLEM_04718 [Clostridium hylemonae DSM 15053] gi|225162568|gb|EEG75187.1| hypothetical protein CLOHYLEM_04718 [Clostridium hylemonae DSM 15053] Length = 586 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 176/600 (29%), Positives = 287/600 (47%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +W+ L + +K I +A ++ NR+ + + +LN +I L D +++ Sbjct: 3 QWILLRKGADF---EELGRKFGISPRLACLIRNRDVIGPEAVDRYLNGTITDLY-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I + KI I GDYD+DG + ++++ L A+ IPDRI DGY Sbjct: 59 KDMDKAVEILREKIEENRKIRIIGDYDIDGVNATYILLKGLRKSGACADSDIPDRIKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N L+E+ +G I+T D G + + + Y G+ VIV DHH+V E Sbjct: 119 GLNIELIERAYRDGIDTIVTCDNGIAASEEIAYGKRLGMTVIVTDHHEVPYESEGEEKNY 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+++P + LC A V + ++ +Y + + DL LL+ VA Sbjct: 179 ILPAADAVIDPKQPGCGYPFKGLCGAAVAYKLIEALYEAMGNE-----ADDLDDLLENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 +ATV DV+ L+ NR V +GL RR NPGL ALIE I + + ++G+++GP + Sbjct: 234 VATVGDVMELVDENRILVREGLERLRRTVNPGLGALIECTGIDREKLNSYHIGFVLGPCL 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NAGGR+ + LL ++ +E ++LA L LN +R+ M +A +EQA + + + Sbjct: 294 NAGGRLDTAKRALDLLCAERKKEADILAGDLKALNDSRKEMTAAAVEQAVQMI--ETTSL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+ V H + G++A RL+E++ RP++ ++ EDG GSGRSIE + + Sbjct: 352 GKDRVLAVYLPDCHESLAGIVAGRLRERYCRPAYVMTDAEDGV-KGSGRSIEAYHMY--E 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 A +L K GGH MAAG ++E+ N + + + ID + Sbjct: 409 ELAGCRELLTKYGGHMMAAGFSLEKENVEQFRRRLNENC--TLKESDMREKVVIDMEMPF 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 S V ++ L+ P+G GN PVFA +L ++ L+M + +A Sbjct: 467 SCVTEDIVRELKYLEPFGNGNKKPVFAARKVELLGGQIFGKNRNVLKMRVKDAAGNETEA 526 Query: 544 IAFRVYGT--------PLGEFLMQSRGKR-----MHVTGHLCVNYWRGSKRCQLRVLDAS 590 + F G E L Q G+R + VT + VN + GS+ Q+ + Sbjct: 527 VYFGDTGRFCSYLEEQYGKEALKQFLGRRRSKMTLSVTYYPEVNEYMGSRTMQIVITHYQ 586 >gi|163846709|ref|YP_001634753.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus aurantiacus J-10-fl] gi|222524518|ref|YP_002568989.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus sp. Y-400-fl] gi|163667998|gb|ABY34364.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus aurantiacus J-10-fl] gi|222448397|gb|ACM52663.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus sp. Y-400-fl] Length = 570 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 173/582 (29%), Positives = 264/582 (45%), Gaps = 22/582 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMP 70 S RW + ++ + ++A +L R + A+ FLN + Sbjct: 2 SARRQRWEIRPPAP-----TSFVEQLGLHPLLAHLLYQRGLHEPSIARAFLNADYSSGLH 56 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP + AA RI +AI E I ++GD+DVDG +VAL+ + + YIP R Sbjct: 57 DPFAMRGMAAAAGRIAEAIERGELIAVYGDFDVDGITAVALLTQAIKAMGGRIRPYIPHR 116 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +GYG N + + + +G L+ITVDCG ++Y + A G+DVIV DHH P Sbjct: 117 AREGYGLNNLAISQLVADGVTLLITVDCGISNYAEVAEANRLGLDVIVTDHHHPPMLLPP 176 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A+VNP + D L G+ F V+ + R K P LLDLVAL TV Sbjct: 177 ALAIVNPRQPDCAYPFKGLVGVGIAFKVVQALARY----GKRPAGLRGRDLLDLVALGTV 232 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309 D+ PL NR V GL+ PG+ AL+ +S I + + + + P +NA G Sbjct: 233 ADMGPLHDENRVLVRAGLIALNESSRPGVLALVAAAGLSPGMIDSGAIAFALAPRLNAAG 292 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ LL++D+ + ++LA +L+ N+ R+ + + AE V+ + Sbjct: 293 RLADARRAYELLLADERMKADLLAAELNTTNRERQALTRQLYAMAETMVMQ--SGRTEHP 350 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +IVV ++ G++GL+AARL E + RP I E+ GS RSI GF I + Sbjct: 351 LIVVSHPGFNAGVIGLVAARLVETYHRPVIVIEQGEE-TSRGSARSIPGFSIIDLFDQC- 408 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + V+ GGHA AAG T+ L + A P ID + S ++ Sbjct: 409 -ADLFVRYGGHAAAAGFTISTNQITALEQRLLALGSQHLSAEQLVPRLLIDATVPLSDLS 467 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAIAFRV 548 L L P+G GNP PVF PN + + + HL+M + +AI F Sbjct: 468 WDLYATLCQLEPFGQGNPQPVFMTPNVTVIDPQPTTDGNHLRMRVRVGQ-TSFEAIGFHF 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L + + + L V+ W G +R +L V D Sbjct: 527 G--RFADALRRHPN--IDLAYQLAVDEWNGQRRLRLLVRDFR 564 >gi|238852633|ref|ZP_04643043.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri 202-4] gi|238834779|gb|EEQ27006.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri 202-4] Length = 756 Score = 369 bits (946), Expect = e-99, Method: Composition-based stats. Identities = 160/577 (27%), Positives = 284/577 (49%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + N + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQR---QASNLDQELIEDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K+ RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ S ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ +++ V+ Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPASFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DAMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI++ ++ ITA ++G+ I P +NA GR+ +++ Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGQITATDVGFNIAPRLNAVGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A K++ LN R+ + + + E+ A+V + Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEEIATKIEELNNERKELTAEVYEKCLAQVKEKGW--QHRNTLVLYS 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E+G+ GSGRS GF++ + +++ L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSNGFNLFDTLEP-MKDDFLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ + + V D LN V + Sbjct: 405 KFGGHDFACGLSLKADKL----EGLRSRFEKSFKPNTDLEVKDFDFELNLREVTPDTLTE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP PVF+ ++S+ + H++ T E + + L + F G Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFTAEKNNGK-LTIVGFN-KGFVN 518 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + L +N W+ Q + Sbjct: 519 QNLLPFIKELYV----TLSLNSWKNVSTVQGMLAGIE 551 >gi|294651891|ref|ZP_06729181.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter haemolyticus ATCC 19194] gi|292822214|gb|EFF81127.1| single-stranded-DNA-specific exonuclease RecJ [Acinetobacter haemolyticus ATCC 19194] Length = 566 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 173/560 (30%), Positives = 262/560 (46%), Gaps = 21/560 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + ++L P L D A I QAI ++I+I Sbjct: 20 GVPSFIAEILARRGVQSEQELE-----LKLKHLLPPTLKGIDVAVELIDQAIDQQKQIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITV 156 GDYD DGA S ALM+ L +PDR GYG P + E L+ITV Sbjct: 75 IGDYDADGATSTALMVLVLQEMGARVEYLVPDRFKYGYGLTPKIAELAKQSYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A + VI+ DHH A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVETAQALAMQVIITDHHLTTKPTPTAEAVVNPNQLGCDFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + Q + + LDLVAL T DV L NR + GL + Q Sbjct: 195 YVLAKLASHRAQYG--KSSCKVTQYLDLVALGTYADVATLDYNNRILIDAGLKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + + A++LG+++GP INA GR+ +G L+++D Q +A Sbjct: 253 RVGILALLDIAGRDAASLRAQDLGFVLGPRINAAGRMESMRIGIECLLANDMQTAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E+ M +QA + + Q Q +V+ ++WH G++G++A RLKE+ Sbjct: 313 QLNQLNLERRQVETEMKQQALSALQHIQLTAEQIPPALVMFDEQWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + +EDG GS RSI+G I M+ +L GGHA AAGLT+ + Sbjct: 373 FYRPSLVFAPDEDGIHIKGSARSIDGIHIRDMIESVAEQRPDLLSHFGGHAAAAGLTLRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F F + + + + DG L SA++++ +D +E GP+G P P Sbjct: 433 EHFDEFKSLFTQMIAEM-DSDLFQATLWTDGELGDSALHLSSLDWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F ++ R + HL++ S ++ AIAF F + + Sbjct: 492 FEGR-FQVVDYRWLKDQHLKLKLAV-GSHSIDAIAFNAIDR----FEFNPMLGYVDLVYS 545 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 L N + GS QL+V Sbjct: 546 LERNVFNGSTSLQLQVTYLK 565 >gi|116629483|ref|YP_814655.1| single-stranded DNA-specific exonuclease [Lactobacillus gasseri ATCC 33323] gi|311110872|ref|ZP_07712269.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri MV-22] gi|116095065|gb|ABJ60217.1| exonuclease RecJ [Lactobacillus gasseri ATCC 33323] gi|311066026|gb|EFQ46366.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri MV-22] Length = 756 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 159/577 (27%), Positives = 283/577 (49%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + N + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQR---QASNLDQELIEDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K+ RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ S ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ +++ V+ Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPASFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DAMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI++ ++ ITA ++G+ I P +NA R+ +++ Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGQITATDVGFNIAPRLNAVVRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A K++ LN R+ + + + E+ A+V + Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEEIATKIEELNNERKELTAEVYEKCLAQVKEKVW--QHRNTLVLYS 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E+G+ GSGRS GF++ + +++ L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSNGFNLFDTLEP-MKDDFLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ + + V D LN V + Sbjct: 405 KFGGHDFACGLSLKADKL----EELRSRFEKSFKPNTDLEVKDFDFELNLREVTPDTLTE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP PVF+ ++S+ + H++ T E + + L + F G Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFTAEKNNGK-LTIVGFN-KGFLN 518 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + L +N W+ Q + Sbjct: 519 QNLLPFIKELYV----TLSLNSWKNVSTVQGMLAGIE 551 >gi|89895199|ref|YP_518686.1| hypothetical protein DSY2453 [Desulfitobacterium hafniense Y51] gi|89334647|dbj|BAE84242.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 770 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 173/553 (31%), Positives = 269/553 (48%), Gaps = 23/553 (4%) Query: 44 ARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 A +L R + + +FL PS+ L P + +A R+ A EKI+I+GDYD Sbjct: 2 ADILRQRGIEAEEEIMEFLRPSLLNL-NSPFAFREMARAIERLELARAQEEKILIYGDYD 60 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S AL+ + L+ A YIP R+ +GYG + + K + +++ITVDCG T+ Sbjct: 61 VDGVTSTALLYKVLTDLGFKAVAYIPSRMDEGYGLHKDAITKALQANVKVMITVDCGITA 120 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 + ++YA +QGID+I+ DHH+ AYA++NP D L GV F + + Sbjct: 121 VEEVEYARSQGIDIILTDHHEPPDSLPQAYAILNPKVKDSGYPFRDLAGVGVAFKLAQAL 180 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 L + + +L +LDL AL T+ D+VPL NR V GL + GL+ L Sbjct: 181 LERLEEGKSGA--YAVLEILDLAALGTIADLVPLTHENRIIVAYGLRQMENTIHLGLRTL 238 Query: 283 IERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 +E P+ A + +M+ P INA GR+ + G LL++ + LA L N Sbjct: 239 LEECGLWGKPLKAGQIAFMVAPRINAAGRMDSARAGLELLLTGHEERAVELARFLSRENT 298 Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401 R+ E + +A + VIV+ G WH G++G++A+RL E++ RP F I Sbjct: 299 LRQDTEKEIFAEAVEILEKNPM----PRVIVLSGKNWHHGVIGIVASRLVERYYRPVFLI 354 Query: 402 SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 + EE+ G GS R I G+ + + + +L K GGH+ AAG +++ L + Sbjct: 355 AEEEE-IGKGSARGIGGYHV--LDELKAQAELLEKFGGHSQAAGFSLKLETIPLLREALN 411 Query: 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI 521 + A +P + ++D + ++ +L+ LE P+G GNP+PV A ++ L Sbjct: 412 Q-AALHLPEEMFYERIRVDQCVPLEVLDASLLHDLEHLAPFGFGNPSPVLAGRDYPLYMA 470 Query: 522 RVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG-KRMHVTGHLCVNYWRG 578 V HL+ F Q + IAFR GE L G + V L N +RG Sbjct: 471 DTVGKDHAHLKCMFGPQG--EWEGIAFR-----KGEELANILGSATVDVAFGLDWNTFRG 523 Query: 579 SKRCQLRVLDASP 591 ++ QL + D P Sbjct: 524 AQSIQLMIKDIQP 536 >gi|116618568|ref|YP_818939.1| single-stranded DNA-specific exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097415|gb|ABJ62566.1| exonuclease RecJ [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 655 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 170/587 (28%), Positives = 284/587 (48%), Gaps = 27/587 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72 + W L Q ++ + I ++ ++ R + A +L PS+ L DP Sbjct: 2 NQNNWNILP-QPSEKVVRQLSAQLNISQFMSTIVAQRGYTDPEAAFKYLQPSVEQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L D D+ R+ A + EKI+++GDYD+DG S A+M+ L + YIP+R Sbjct: 60 MLLHDMDRTIERLQDAAFGGEKIVVYGDYDMDGVTSTAIMVEALEVLGADVTPYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN +K I +GAQLI+TVD G + +A++YA +QGIDVI+ DHH++ + AY Sbjct: 120 DGYGPNIDTYKKLIADGAQLIVTVDNGVSGQEAVEYAMSQGIDVIITDHHEMPATLPNAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL-LSLLDLVALATVC 251 A+++P G L AGV F V + L + V +L LLDLVAL + Sbjct: 180 AVIHPRHPKGQYPFGDLSGAGVAFKVAQAL---LNEGQPVEDQTELPTELLDLVALGEIS 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGG 309 D+V L NR V GL PGL A+++ + +E + + I P +NA G Sbjct: 237 DMVSLTDENRVLVSWGLKQINVSPRPGLTAVLKNAGKKDNEPVISETVSFKIAPRLNAVG 296 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G+++L +LL+S D +E +A +++ +N R+ + + A+ D+ + Sbjct: 297 RLGDASLSLQLLLSQDPEESTAIASEVEAINAQRQEIVEEVFGSAKQMA--LSDEYKNDQ 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+V+ G WH GI+G++A+RL E +P+ +S + G GSGR+ FD+ + ++ Sbjct: 355 VLVIAGQDWHQGILGIVASRLVELLQKPTIVLSLTD-GVYKGSGRTFGDFDLYQFMN--T 411 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + GGHA A GL + L + + + + I I+ L+ + ++ Sbjct: 412 FHDLYDTFGGHASALGLAISPEQLDVLKEQVRLNSAKL---QIHAKPISINTTLSVNEIS 468 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + L P+G GN PVF K+ + + H+++ E+ ++A+ F Sbjct: 469 TETYEELRLLEPFGTGNQQPVFGLQQPKINKVTTMGNLKQHIKLALENN----VEAVGFN 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + G + L +NY+RG K QL + + E Sbjct: 525 HPD--WVPMVANPLG--ISFAATLGINYFRGRKTIQLLLTAINTSEA 567 >gi|309805328|ref|ZP_07699378.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 09V1-c] gi|308165328|gb|EFO67561.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 09V1-c] Length = 761 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 159/572 (27%), Positives = 276/572 (48%), Gaps = 28/572 (4%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 ++ + + K+ + I A++ R ++ D DF + DP ++ D K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNDDESKLADPFLMHDMKKT 63 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 64 VNRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ +N G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N + Sbjct: 124 YQELVNNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDLAMIGTIGDMVKVSGEGH 232 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL L Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GGH Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A GL++++ + +L + F+ + + + D LN + + + + G Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMVKVG 466 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRS------YLD 519 Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ +N W + Q + D Sbjct: 520 TNILPYVHMIMVTFGINKWNNKAKLQGIISDF 551 >gi|152981063|ref|YP_001352953.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium sp. Marseille] gi|151281140|gb|ABR89550.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium sp. Marseille] Length = 549 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 172/563 (30%), Positives = 265/563 (47%), Gaps = 25/563 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++AR+ R + LN + L+P P +L D AA + AI +K++I Sbjct: 5 GVHPVMARLYAARGLLD---LKELNSELTALIPPPGLLK-IDVAATFLADAIAAKKKLVI 60 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 DYD DGA + A+ +R L + +P+R GYG P ++E + +I+TV Sbjct: 61 VADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEIVELAVREKSPDIIVTV 120 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G S D + A +GIDV+V DHH A +VNPN+ D +L GV+F Sbjct: 121 DNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQPDCGFPSKNLAGVGVMF 180 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + +R+ L +LLDLVAL TV DVV L NR V +GL R Sbjct: 181 YVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDANNRILVAQGLKRMRAG 240 Query: 275 GNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 A + + +LG+ +GP +NA GR+ + +LG L +DD + Sbjct: 241 RMHAGVAALFRAAGREARRASPFDLGFALGPRLNAAGRLSDMSLGIECLTTDDEGRAWAI 300 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +LD +N+ RR +E+ M + A + + + Q + I V WH G++G++A+RLK+ Sbjct: 301 AQQLDEINRERRTIEADMQDTALLLL--ENFNPQDKTTISVFDPSWHQGVIGIVASRLKD 358 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 KF RP+ + DG GSGRSI GF + + ++ K GGHAMAAGLT+ Sbjct: 359 KFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPKLIDKFGGHAMAAGLTIRA 418 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 + F+ + + V + DG L ++ I+++E A +G G P+ Sbjct: 419 DALDAFTEAFEAVGKDWLDQNQLERVVETDGPLESAYFTTQFIELME-AQVWGQGFAPPL 477 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F ++ + R++ HL++T E +D + AI F S R V Sbjct: 478 FCDE-FRVVNQRILKERHLKLTLE-KDGASYDAIWFGHID---------SLPNRARVAYR 526 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 L N + G R QL V A + Sbjct: 527 LDANEFNGRTRVQLLVEHAEAAD 549 >gi|149173288|ref|ZP_01851919.1| single-strand DNA-specific exonuclease [Planctomyces maris DSM 8797] gi|148848094|gb|EDL62426.1| single-strand DNA-specific exonuclease [Planctomyces maris DSM 8797] Length = 587 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 167/584 (28%), Positives = 285/584 (48%), Gaps = 20/584 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W E ++ ++ + I ++A+VL+ R + A+ F++ + L+ P Sbjct: 3 QNWRFAPHDE--SQVRRLSSEMRISPLLAQVLIARGLQDAAAARSFIDARMTELLE-PGS 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + A+ RIV A+ + +I I+GDYDVDG + +++++ ++ + + +IP+R+ DG Sbjct: 60 MPGVETASDRIVAALKDKRRITIYGDYDVDGMTATSILLQCITLANGKCDYFIPNRLDDG 119 Query: 135 YGPNPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YG N + + + +L+ITVDCG TS A G+++I+ DHHQ+ E A Sbjct: 120 YGLNCDAIRQLHEEDPQRLLITVDCGITSVQEAALARELGLELIITDHHQMADELPAADC 179 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVC 251 LV+P D HLC AGV + + + L Q + L + L A+ T+ Sbjct: 180 LVHPRLPDSDYEFPHLCGAGVALKLAWAVCQKLGDGQKASPQMREYLKCAVGLAAIGTIA 239 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGG 309 DVVPL+G NR V GL + GL+ L++ I + E++G+ I P +NA G Sbjct: 240 DVVPLVGENRILVRYGLSALAERAPLGLQELMKVAEIKAGQMLDTEDIGFAIAPRLNAAG 299 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G++ L LL + + LA LD LN+NRR +E + +QA+ V + + ++ Sbjct: 300 RLGQARLAVELLTTSNQDRASQLAAYLDELNKNRRTVERRIFKQAKEMV-EENAEWEEHH 358 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-KGIGSGRSIEGFDIGKMVSFA 428 +V+ WHPG++G++A R+ E F +P+ I+ + G GS RS GFD+ S Sbjct: 359 TLVLAHADWHPGVIGIVANRVSEHFEKPTVLIALDATTRTGQGSARSFAGFDLHAGFSSC 418 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 LV+ GGH AAGL +E F ++A + + +ID + + + Sbjct: 419 --SAHLVRYGGHQAAAGLKIEEDKIENFRQAFAEYAADAPKPSEDELLVRIDAEVCLNEI 476 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQAIA 545 + L+ GP+G NP P F +L R + HL + F+ +++ ++AIA Sbjct: 477 TKQAVRELDCLGPFGQENPRPQFVATRVQLAEPPRTMGEGGRHLSLVFQQHNTK-IRAIA 535 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F M G ++ +N +RG + QL++ D Sbjct: 536 FGKGEWA---TQMDEDGGPFSISFAPGINRFRGFESVQLQLKDW 576 >gi|228469634|ref|ZP_04054614.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas uenonis 60-3] gi|228308827|gb|EEK17528.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas uenonis 60-3] Length = 593 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 160/587 (27%), Positives = 261/587 (44%), Gaps = 23/587 (3%) Query: 18 WVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 W E + IP + R+L R + + A+ F +PS+ L DP ++ Sbjct: 5 WQYTPFTPEEEVGGSQLAHALRIPAVAGRLLYRRGIRTEAEAQRFFHPSLEDLH-DPFLM 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIV 132 D D A +R+ +A+ E IMI+GDYDVDG +V+L+ ++L + + YIP R Sbjct: 64 QDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDD 123 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ GA LII VDCG + + + YA GID I+ DHH + A Sbjct: 124 EGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAA 183 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D LC GV F + DN P L LLDLVA++ D Sbjct: 184 AVLDPKRPDCHYPFEELCGCGVAFKFMQA----FGMDNGFPS-ASLFKLLDLVAVSIAAD 238 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V ++ NR GL R + GLK +I+ + IT ++ Y IGP INA GR+ Sbjct: 239 LVSVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMADIIYKIGPRINASGRM 298 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+S+D++ ++ +D N RR ++ + ++A ++L ++ ++ Sbjct: 299 MNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEA-MQLLQVNPELAHQPIV 357 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WH GI+G++A+R+ E RP+ ++ D + +GS RS+ G DI ++ A Sbjct: 358 VLYQPDWHKGIIGIVASRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEA--R 414 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+ GGH AAGLT+ + Q + + ++D + V Sbjct: 415 DLLLNFGGHTYAAGLTLLPDKLPDFRAYIQSVNAVVDTDRAQSTPIEVDAEIELREVTQR 474 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFES----QDSETLQAIAF 546 L ++ PYG N P+F + V ++ + IAF Sbjct: 475 LYTTIQRFAPYGPDNYQPLFVTQQLYDGGGSKAVGRNGEHFKVDAIPSLGSRKHCPGIAF 534 Query: 547 RVYG--TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + + N++ G QL V D P Sbjct: 535 NQAPAFRFIKKSSAGRASAPFALVYQIDENHFNGVVSLQLLVKDVKP 581 >gi|220909898|ref|YP_002485209.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7425] gi|219866509|gb|ACL46848.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7425] Length = 813 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 175/587 (29%), Positives = 286/587 (48%), Gaps = 22/587 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW Q A I + + ++A+VL+NR + + + + FL P L++P PL Sbjct: 22 QRWQVAPVQS--RLAEQIARMTGLDPLLAQVLINRGLETPEQVQQFLEPE-SLILPSPLT 78 Query: 75 -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D + ++QAI ++I I GDYD DG S AL++R L N IP R+ + Sbjct: 79 EFADLGLSVELLLQAIAAQKEIAICGDYDADGMTSTALLLRALQALGARVNYAIPSRMQE 138 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N ++E+F G QLI+TVD G ++ + A G+ VIV DHH + E A A Sbjct: 139 GYGLNERIVEEFAGSGVQLILTVDNGIAAHRPITRARELGLAVIVTDHHDLPPELPCANA 198 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP L S L GV +++ V + + L + + + +LL+L L T+ D+ Sbjct: 199 ILNPKLLPHSSPYAGLAGVGVAYILAVSLAQSLGRTEDL-----VTALLELFTLGTIADL 253 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN------ISSPITAENLGYMIGPSINA 307 PL G+NR +V +GL + R G++ALI+ + E +G+ +GP INA Sbjct: 254 APLTGVNRRWVKRGLALLPRSRFAGIQALIQVSGGLTSKQENQAFKPEAIGFRLGPRINA 313 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ LL +DD AM + NQ R+ + + +A A++ D+++ Sbjct: 314 IGRIGDPQTVIDLLTTDDPMLAYAQAMVCEQTNQKRQQLCEEIEREAIAQLEAAQLDLER 373 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+V+ WH G++G++A+RL E++G P F S+EE G+ GS R I FD+ + + Sbjct: 374 ERVLVLVHPDWHHGVIGIVASRLVERYGVPVFIGSYEEQGQIRGSARGIPEFDVFGALQY 433 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +L+K GGH A G ++E L + FAH + P+ +D ++ S Sbjct: 434 C--QDLLLKFGGHRAAGGFSLEADQLPALRSRLRDFAHLQLQPEQLKPLVTVDVEVHLSQ 491 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIA 545 + L ++ P G GNP PVF ++ + + HL++ D ++ Q I Sbjct: 492 ITWELYHQIDRLHPCGIGNPEPVFWSAGVEVVEQKRIGKDQAHLKLVLAQTDLDSPQKIQ 551 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 ++ G + + V HL N W G + +L ++ P Sbjct: 552 WKATAWRWGRYY--PLPTHLDVAYHLQSNTWNGETKLELELIGVRPA 596 >gi|146318963|ref|YP_001198675.1| single-stranded DNA-specific exonuclease [Streptococcus suis 05ZYH33] gi|146321172|ref|YP_001200883.1| single-stranded DNA-specific exonuclease [Streptococcus suis 98HAH33] gi|253752032|ref|YP_003025173.1| single-stranded-DNA-specific exonuclease [Streptococcus suis SC84] gi|253753857|ref|YP_003026998.1| single-stranded-DNA-specific exonuclease [Streptococcus suis P1/7] gi|253755267|ref|YP_003028407.1| single-stranded-DNA-specific exonuclease [Streptococcus suis BM407] gi|145689769|gb|ABP90275.1| Single-stranded DNA-specific exonuclease [Streptococcus suis 05ZYH33] gi|145691978|gb|ABP92483.1| Single-stranded DNA-specific exonuclease [Streptococcus suis 98HAH33] gi|251816321|emb|CAZ51950.1| putative single-stranded-DNA-specific exonuclease [Streptococcus suis SC84] gi|251817731|emb|CAZ55482.1| putative single-stranded-DNA-specific exonuclease [Streptococcus suis BM407] gi|251820103|emb|CAR46394.1| putative single-stranded-DNA-specific exonuclease [Streptococcus suis P1/7] gi|292558616|gb|ADE31617.1| RecJ exonuclease [Streptococcus suis GZ1] gi|319758400|gb|ADV70342.1| single-stranded DNA-specific exonuclease [Streptococcus suis JS14] Length = 737 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 177/591 (29%), Positives = 283/591 (47%), Gaps = 32/591 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 + W L G + + I +K + + A++L R + S + FL PS+ L DP Sbjct: 5 NYDWQLLTGFSD-EQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D DKA RI +AI N E I+I+GDYD DG S +++ L +Y+P+R D Sbjct: 63 LLHDMDKAVERIRRAIENYEHILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTD 122 Query: 134 GYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN S+ + FI + LI+TVD G ++A+ YA G+DV+V DHH ++ AY Sbjct: 123 GYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQEMGVDVVVTDHHSMQETLPNAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + HL GV F + + + D LLDLVA+ T+ D Sbjct: 183 AIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHAD-----------LLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR V GL + ++ GL+ LI+ I I E +G+ + P +NA GR+ Sbjct: 232 MVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + N LL D +E +A+ +D N R+ + A+ ++A+ + V Sbjct: 292 DDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEAKTMLR------HDRPVQ 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + W+PG++G++A RL E+ +P +S EDGK GS RS+E DI + + Sbjct: 346 VLAKEGWNPGVLGIVAGRLLEELQQPVIVLS-IEDGKAKGSARSVEAVDI--FKALKDHQ 402 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + + GGHA AAG+T+E L + L + +D L+ + + Sbjct: 403 DLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLD 462 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549 + E PYG N PVF + +++S R + HL++ ++ + +AF Sbjct: 463 TLKSFEKLAPYGMDNKKPVFYIRDFQVESARTMGQNNAHLKLRI-TKGAAGFDVLAFGKG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L S+ K + + L VN W G+ QL ++DA + + Sbjct: 522 NL----ALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYNIR 568 >gi|298492126|ref|YP_003722303.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae' 0708] gi|298234044|gb|ADI65180.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae' 0708] Length = 696 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 168/607 (27%), Positives = 287/607 (47%), Gaps = 42/607 (6%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S+ RW L + LAI + I++++L+NR + + + + F++P L Sbjct: 7 NKSLPNQRWQIALHNPELAENLAIL--TNLSPIISQLLINRGMETPEAVQRFIDPESLSL 64 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 D + + AI + EKI I GDYD DG S AL++R L + + IP Sbjct: 65 PSPLEEFPDLAVSVELLANAITHQEKIAICGDYDADGMTSTALLLRTLRALGADVDYAIP 124 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 R+ +GYG N ++E+F EG LI+TVD G ++++ + A G+ VI+ DHH + + Sbjct: 125 SRMHEGYGINKRIVEEFHGEGVGLILTVDNGISAFEPIARARELGLKVIITDHHDIPQKL 184 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 PA A++NP + + S + GV +++ + L + + + +L L L Sbjct: 185 PPANAILNPKLIAESSPYRGVAGVGVAYILAACSAQQLGELKGL-----VQPMLALFTLG 239 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS------------------- 289 T+ D+ PLIG+NR +V +GL + PG++ALI+ + Sbjct: 240 TIADLAPLIGVNRRWVKRGLKHLAKSTLPGVQALIQVAGVQASQKIQNSKFKTQNNSDSQ 299 Query: 290 --SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347 + AE++G+ +GP INA GRIG LL +DD AM+ + +N R+ M Sbjct: 300 HLKSLKAEDIGFRLGPRINAIGRIGNPQTVIELLTTDDMGLALERAMQCEQINIQRQQMC 359 Query: 348 SAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 + ++A A V + +Q+ V+VV D WH G++G++A+RL E++G P F ++E++ Sbjct: 360 EQIEQEAIALVEDLYLNFLQKDRVLVVVKDHWHHGVIGIVASRLVERYGVPVFIGTYEDE 419 Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 GS R I F++ + + +L K GGH A G ++ N L +FA+ Sbjct: 420 TMIRGSARGIPEFNVFEALE--YSHELLWKHGGHKAAGGFSLPADNLLALRSRLSEFANQ 477 Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526 + P+ KID N + +N L L P G NP+PVF N ++ ++V Sbjct: 478 CLQLQHLKPLLKIDAQANLNQINQELYQQLNVLHPCGIDNPDPVFWTANAQVIEQQIVGK 537 Query: 527 AHLQMTFE---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 H+++T ++AIA+R R+ + L N + G+ + Sbjct: 538 GHIKLTLAQTIDNQQYKIKAIAWRWRDYF-------PLPPRVDIAYKLRENNFGGNISIE 590 Query: 584 LRVLDAS 590 + ++ Sbjct: 591 MELIGVR 597 >gi|223939075|ref|ZP_03630959.1| single-stranded-DNA-specific exonuclease RecJ [bacterium Ellin514] gi|223892235|gb|EEF58712.1| single-stranded-DNA-specific exonuclease RecJ [bacterium Ellin514] Length = 577 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 283/589 (48%), Gaps = 29/589 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 FRW Q + + ++A+ LVNR +S A FL P ++ L DP + Sbjct: 3 FRWSLSPSQPL--LIKQLASVLKVSPLLAQCLVNRGMSNAEALATFLQPRLKEL-ADPFL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + A R+ QA E +++FGDYDVDG S AL+ L N Y+P R+ +G Sbjct: 60 LPNMAAAVERLFQARQRKESLVVFGDYDVDGVTSTALLAESLRALGWTVNFYLPHRMEEG 119 Query: 135 YGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YG + +E L++ VDCGST+ + Y +GIDV+V+DHHQV S A A Sbjct: 120 YGLSQEGVENCLRKFPTTLLLAVDCGSTAVTTIDYLRQKGIDVLVLDHHQVSSPAPAAIA 179 Query: 194 LVNPN-----RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN-KVPLNFDLLSLLDLVAL 247 LVNP D S LC+ G+ F ++ + + R+ +DL LLDLVAL Sbjct: 180 LVNPQLGPTREEDGKSSFRELCSVGLAFKLVHALVKRGREVGLAEAEKYDLRPLLDLVAL 239 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 T+ D+VPL G NR V GL PGL AL + +++ + A +G+ + P +NA Sbjct: 240 GTIADLVPLTGENRILVYMGLQRLSSTVRPGLVALKKVAQVTASMGAYEVGFQLAPRLNA 299 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ + LL++ D Q +A LD+ N+ R+ +E ++E+ V + + ++ Sbjct: 300 AGRLENAAEALDLLMAPDMQTAVPIAESLDLRNRERQKIEKGIVEEVIGSVRAK-FNPER 358 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 VIV WH G+VG++A+R+ ++F RP+ + E + GSGRSI GFD+ + Sbjct: 359 DYVIVEGQLLWHVGVVGIVASRVLQQFYRPTIIVG-GEGDEWRGSGRSIAGFDLAAALRD 417 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +LV+ GGHAMAAGLT+E L + A ++ P+ ++D + Sbjct: 418 C--DDLLVRHGGHAMAAGLTIEAGKLDLLRVRMNELAQRLIKREELQPLLRLDAEVTLKE 475 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR---VVN--LAHLQMTFESQDSETLQ 542 +N + L+ P G GNP F N + R + H+++ + T + Sbjct: 476 INFDSLFELDLLKPTGQGNPVVQFMVRN--VTQARPLQRMGAEKQHVKLWLTD-GTATHE 532 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 A+ + R + +N + G + QL+VLD P Sbjct: 533 AVWWGAGKD------TALPVGRFDLAFAPQINEFAGRRTVQLKVLDWKP 575 >gi|315651023|ref|ZP_07904058.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium saburreum DSM 3986] gi|315486706|gb|EFU77053.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium saburreum DSM 3986] Length = 578 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 168/580 (28%), Positives = 289/580 (49%), Gaps = 25/580 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + R I+ + I ++AR++VNR++ + +LN + LM D L Sbjct: 4 KWMLYTKRADFER---ISARFHISPVLARIMVNRDIKEEDFSLYLNNDL-NLMHDAKDLY 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + A + I+ + +KI + GDYD+DG S ++M+ L H N ++ IPDRI DGYG Sbjct: 60 GVEDAYKEIMSEVKKGKKIRVVGDYDIDGVCSSYILMKSLKHFGANVDVRIPDRIKDGYG 119 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY---- 192 N +++ + N+ +IIT D G ++ ++ A N GI VI+ DHH+V E+ Y Sbjct: 120 INDNIINEAANDKVSMIITCDNGIAAHKQMELANNFGIKVIITDHHEVYQEDGKDYLPVA 179 Query: 193 -ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 ++NP R D +C A V + ++ IY+ L D K+ + +L LL++ A+AT+ Sbjct: 180 DVVINPKRSDCTYPFKTICGALVAYKLVEYIYKRL-YDGKLYEDSELGDLLEVAAIATIG 238 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 DV+PL+ NR V GL NPGLKALI+ + I+A ++G++IGP +NAGGR Sbjct: 239 DVMPLVDENRIIVKNGLKSLMNTKNPGLKALIKATGMEGKKISAYSVGFVIGPCLNAGGR 298 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + + + +S +S E A L LN R+ + + ++ A + + + + Sbjct: 299 LENALVALNMFMSKNSDEANEYASHLKELNDERKDLTAGNVKIA---IESAKSEYINDDI 355 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVSFA 428 +V+ H I G++A R++E G+P+ + +F E+G GSGRSIE +++ + Sbjct: 356 LVIYLKNCHESIAGIIAGRVREALGKPTIILTDAFGEEGMIKGSGRSIESYNM--FEALY 413 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + I K GGH MAAG+++++ K ++ + ID L S + Sbjct: 414 EVKDIFEKFGGHHMAAGMSLKKDRLDEFRKKLNK--NSKLTKEDFIQKIWIDIALPFSYL 471 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546 +I + LE PYG N P FA + K+ S ++ + ++M E D + I F Sbjct: 472 SIDFVRELEKLEPYGNKNDKPKFARKDIKILSKNILGKSKNVVKMVLEDVDGTRMDGIYF 531 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 E K + + + +N + G + Q+ + Sbjct: 532 GDGEAFFEEL---KGKKEIDIIYYPDINEYGGRESLQVII 568 >gi|150020204|ref|YP_001305558.1| single-stranded-DNA-specific exonuclease RecJ [Thermosipho melanesiensis BI429] gi|149792725|gb|ABR30173.1| single-stranded-DNA-specific exonuclease RecJ [Thermosipho melanesiensis BI429] Length = 977 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 163/561 (29%), Positives = 294/561 (52%), Gaps = 19/561 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +W + + ++ IP + A++LV+R V+ + A F+NPS L P +L Sbjct: 2 KWELKKI--DKESSEKLAEELDIPLLTAQLLVSRGYVTPESAYRFINPSKNDLR-SPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+A + ++ A I+++GDYDVDG VA ++ FLS +IP+R+ GY Sbjct: 59 KDMDRAVKYLLLARNKKYPILVYGDYDVDGITGVATLVTFLSKHGWKVKYFIPNRLDVGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G P +++++ +G +L+++VDCG TS+DA+++A G+ V++ DHH +KS A+A+V Sbjct: 119 GIQPEIVDEYFKKGYRLLLSVDCGITSFDAVKHARELGMYVVITDHHTIKSGIPNAHAVV 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D+ GV + ++ + L + ++ LLD+VAL T+ D+V Sbjct: 179 DPKREDETYPFKDFAGVGVAYKLISALALELGL-----PDDEVNELLDIVALGTIADMVD 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L+ NR V +GL + GL L++++NI + IT++++GY + P +NA GR+ + Sbjct: 234 LVDENRYIVKEGLKKLNQTQRVGLVQLMKKLNIKN-ITSQDIGYRLAPKLNAAGRLYSAE 292 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 +L+ +++ E LA L N R+ +E+ + +A K+ + I+ +++V G Sbjct: 293 DAYKLITTNNLSSAEQLAEILMGYNFTRQEIENKIFNEAVYKI--EKSKIKDLPILIVSG 350 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 ++WH G++G++A +L +K+ +PS IS EDG G GSGRS++G +I + Sbjct: 351 EKWHAGVLGIVATKLVQKYNKPSLVIS-LEDGMGRGSGRSVDGVNI--FDVLSSFSRYFE 407 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH MA G ++ L D K + + + +ID VL+ VN +I+ Sbjct: 408 EIGGHPMAVGFSIREEKIDELIDVISKEFVDSHFEVDSK--IEIDTVLDIDEVNDEVINS 465 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G GNP PVF N + IR ++++M + ++ ++ I F + Sbjct: 466 LSYLEPFGHGNPEPVFLIKNSLVDRIRFFGNVVSNVRMVLKGKNKNVIEGIGFGLRKNYY 525 Query: 554 GEFLMQSRGKRMHVTGHLCVN 574 + + + + ++ N Sbjct: 526 DIPAIHAVLTSLDIVANIRQN 546 >gi|86607428|ref|YP_476191.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-3-3Ab] gi|86555970|gb|ABD00928.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-3-3Ab] Length = 818 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 171/616 (27%), Positives = 278/616 (45%), Gaps = 55/616 (8%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPD 71 I RW+ A ++ + + ++A++L+NR +S A + +L P L P Sbjct: 4 IPDQRWLFQPVNPL--AAQSLAEAVGVSPVLAQILLNRGLSSPAAVQQYLQPDPVHLPPP 61 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D A + AI E I I GDYD DG S AL++R L IP R+ Sbjct: 62 SQDFADLPLAVELLEGAIRRQEPIAICGDYDADGMTSTALLLRALR--GAPVYYRIPSRL 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++++ EG +LI+TVD G ++ +Q A G+ VIV DHH + + PA Sbjct: 120 REGYGLNNRMVQELHREGVRLILTVDNGIAAHAPIQLAKELGLTVIVTDHHDLPPQLPPA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP +L S + GV +L+ + ++ + L+L + T+ Sbjct: 180 DAILNPKQLPLSSPYRGMAGVGVAYLLAQALAERRGDEHLERVA------LELFTVGTIA 233 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAG 308 D+ PL G+NR +V +GL + G++AL+ + ++ + E +G+ +GP INA Sbjct: 234 DLAPLTGVNRLWVRQGLALLPTSQVAGIRALLAVMGMTGSPEELRPEWVGFGLGPRINAI 293 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRIG LG +LL +DD Q+ E LA + + LNQ R+ M + +A ++ Q D+QQ Sbjct: 294 GRIGRPELGIQLLTTDDPQQAEKLARRCERLNQVRQQMCGRIEAEALEQIARQGRDLQQE 353 Query: 369 SVIVV---EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-SIEGFDIGKM 424 V+ + RWH G++GL+A+RL E+FG P F S G+ GS R I FD+ + Sbjct: 354 RVLTILGSPQQRWHKGVIGLVASRLAERFGCPVFIGSQSPQGEITGSARQGIPEFDVFQA 413 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + F + + K GGH A G ++ N+ L + ++FA + P+ +ID + Sbjct: 414 LEFC--KDLFSKHGGHPAAGGFSLRAENWPLLEERLRQFAQQRLQPEQIRPLVQIDAEVA 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-------NL---AHLQMTFE 534 + + L L+ P G GNP PVF N ++ + HL++ Sbjct: 472 LADLTFDLYRELQRLQPCGIGNPEPVFCSRNLQVLQQQRFCPQPAQRGEDTPGHLRLLLR 531 Query: 535 SQDSETLQ------------------AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 S L AI + ++ + L W Sbjct: 532 DPVSRGLDGAGSSLAAPAKARSRPLWAIWWGGAAAY-------PLPAQIDIAYTLKAKRW 584 Query: 577 RGSKRCQLRVLDASPV 592 + +L +L P Sbjct: 585 GEETQLELEILGIRPA 600 >gi|323700761|ref|ZP_08112673.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp. ND132] gi|323460693|gb|EGB16558.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio desulfuricans ND132] Length = 569 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 279/580 (48%), Gaps = 25/580 (4%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W + A A+ ++ + ++ +L NR ++ FL+P +R M +P + Sbjct: 5 WKPRNEGTAPSSAAAMAEELNVSPLIVEILWNRGLTDLGDMDRFLSPLLRH-MANPAAVP 63 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +AA + +A+ + ++GDYDVDG + A++ F + ++P+R+ +GYG Sbjct: 64 GLTEAAETLARALDRGGTLAVWGDYDVDGITATAVIKEFFALRGREVMHHLPNRMEEGYG 123 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N +E GA +++TVDCG + + A G+ V+V DHH A+A+ + Sbjct: 124 MNVPGVEALHARGADVLLTVDCGISDLAPVARARELGMTVVVTDHHLPGETLPEAHAVCD 183 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + L GV F+++V + +L D D+ LLDLVAL T+ D+V L Sbjct: 184 PRLA-EGGPCDDLAGVGVAFMLVVALNNLLPGDKV-----DVRPLLDLVALGTIADIVKL 237 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIGES 314 G NR V GL+V + PG+ AL + + + A +G+ + P INA GR+G+ Sbjct: 238 TGQNRILVKNGLLVIKEARRPGMAALKVVSDYARQAELGAGQIGFHLAPRINAAGRMGDP 297 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++ D +A +LD +N RR E + ++A A+ T + +V+ Sbjct: 298 EKALNLLLAKDFDSAMPIAEELDAINMERRRQEQEIADEALAQAETMRH----MAGLVLF 353 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEE--DGKGIGSGRSIEGFDIGKMVSFAVEEG 432 D WHPGI+G++A+R+ EK+ RP+ + + +G GSGRSI F++ A Sbjct: 354 ADHWHPGIIGIVASRVAEKYYRPTLLLCAPDGPEGPLKGSGRSIPEFNLH--DGLAQVSD 411 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGHA AAGL+++ N L + F + A TP K+D L S +N L Sbjct: 412 VLAGFGGHAQAAGLSLDPSNLEALRERFNAHVVETLGAKPLTPTLKLDHELAFSNINNTL 471 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSETLQAIAFRVY 549 + LE P+G GNP PVFA ++ + H+++ E Q L A+R+ Sbjct: 472 LRELELLQPFGMGNPEPVFATRPVRVAEHALFGREGEHVKLVLEDQESGTKLPGKAWRMA 531 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 G+ +G+ M ++ +RG LR+ D Sbjct: 532 GS----LTRAVQGRTMRFAFTPKIDRFRGVPSIDLRIRDW 567 >gi|221135229|ref|ZP_03561532.1| single-stranded-DNA-specific exonuclease RecJ [Glaciecola sp. HTCC2999] Length = 593 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 176/564 (31%), Positives = 268/564 (47%), Gaps = 20/564 (3%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 DI++ + ++R + + D L + L+ L A + + + +KI+I GD Sbjct: 40 DILSAIFLHRGI---ESLDELATGAKDLLH-FNQLNGIQAAVELLFTGLQSQQKIVIIGD 95 Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEG-AQLIITVDC 158 +D DGA S AL M L + +P+R GYG +P +++ I + +++TVD Sbjct: 96 FDADGATSTALCMLALRDLGFHSVQYLVPNRFDFGYGLSPEIVDVAIEQYAPDILLTVDN 155 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G + + +A G+ VI+ DHH A A+VNPN+ G HL GV F V Sbjct: 156 GIACHAGVAHAKAHGLKVIITDHHLPGESLPNADAIVNPNQHYCEFGSKHLAGVGVAFYV 215 Query: 219 LVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 L L P +L LD+VAL TV DVV L NR +V +G+ R + Sbjct: 216 LSAFKTHLLSVGWFPDPARAPNLAQYLDIVALGTVADVVKLDKNNRIFVYQGVQRIRAGR 275 Query: 275 GNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 PG++AL++ +TA +LG+++GP +NA GR+ + G L++DD +A Sbjct: 276 CRPGIRALLDVASKAPDKVTATDLGFILGPRLNAAGRLEDMAQGIECLLADDYDTARGMA 335 Query: 334 MKLDVLNQNRRLMESAMLEQAE-AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 LD LN+ RR +E M EQAE A Q DD +V+ +H G++G+LA R+KE Sbjct: 336 HTLDSLNRQRREIEGQMREQAEAALASIQLDDATLPDGLVLYDADFHQGVIGILAGRIKE 395 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVER 450 + RP+ + ++D + GS RSI G I + I+ K GGHAMAAGL++ Sbjct: 396 QHYRPTVVFAQQDDHELKGSARSIPGVHIRDVFDEINTRHPHIIKKFGGHAMAAGLSINV 455 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 F + + DG L++ + + L AGP+G G P+ Sbjct: 456 QYIDEFTTAFHSVLAKYMAQVPNEAQILSDGQLSSRNMTLDFAHTLVQAGPWGQGFEEPI 515 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F +L S RVV HL+M + D T+ AIAF + + KR+HV Sbjct: 516 FD-NIFELVSQRVVGQKHLKMVLKL-DQVTVDAIAFNIDVNTWPDL----NVKRVHVAYK 569 Query: 571 LCVNYWRGSKRCQLRVLDASPVEG 594 L +N +RG + Q V+ P G Sbjct: 570 LNINEFRGQQSVQCMVVKFGPAYG 593 >gi|160872655|ref|ZP_02062787.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsiella grylli] gi|159121454|gb|EDP46792.1| single-stranded-DNA-specific exonuclease RecJ [Rickettsiella grylli] Length = 575 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 162/569 (28%), Positives = 271/569 (47%), Gaps = 25/569 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ R+ R + K L+ ++ L+ LT ++AA+ + +A+ +++++ Sbjct: 18 GLHPVLQRIYAARGIKS---KAELDYQLQHLLHY-QSLTGIEEAAKCLGEALMQQQRLLV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME-KFINEGAQLIIT 155 GD+D DGA S AL + L + +P+R GYG P ++E + LIIT Sbjct: 74 VGDFDSDGATSSALAVNALRQFGAQHVDFLVPNRFEYGYGLTPEIVELALQTKKPDLIIT 133 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G +S+D + A G+ V++ DHH A A+VNP + D HL GV+ Sbjct: 134 VDNGISSHDGVIAAKAAGLKVVITDHHLPAESLPCADAIVNPQQQGDQFPSKHLAGVGVI 193 Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 F V++ + + LR ++ LDLVAL TV D+V NR V +GL Sbjct: 194 FYVMLALRQYLRCHAWFEKMKCALPNMGQFLDLVALGTVADLVSFDRNNRILVSQGLQWI 253 Query: 272 RRQG-NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 ++ PG+ AL+ + A +L + I P +NA GR+ + +LG L+ D Sbjct: 254 KKGKARPGIYALLTLAKCEKEYLVASDLSFTIAPRLNAAGRLADMSLGIACLLETDFNRA 313 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 A++L LN+ RR +E+ M +A + I + RWH G++GLLA+R Sbjct: 314 YDYALQLSQLNEERRKIENTMKHEAFIILEKIIKKKSLKKGICLYDSRWHQGVIGLLASR 373 Query: 390 LKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGL 446 L E+ RP+ + + + GS RSI G I +++ ++ K GGHAMAAGL Sbjct: 374 LSERLHRPTIIFADGHQTNELKGSARSIRGVHIRDLLANLALRYPHLMTKFGGHAMAAGL 433 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE-SAGPYGAG 505 ++++ +F FQ+ P DG L A++I +++ +GP+G Sbjct: 434 SLKKESFDAFSQLFQQECEQQCQTDCL-PAIYTDGELTQEALHIEFAELIRYQSGPWGQD 492 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTF--ESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 P PVF ++ + R+V HL+M + +++ ++AIAF V R + Sbjct: 493 FPEPVFEGC-FRVLTQRLVGDKHLKMVLTTQKGNNKPIEAIAFNVNPH-----WPNHRAE 546 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +NY++G K QL + + V Sbjct: 547 YITACYRLDINYYQGRKTLQLIIENLKIV 575 >gi|298528473|ref|ZP_07015877.1| single-stranded-DNA-specific exonuclease RecJ [Desulfonatronospira thiodismutans ASO3-1] gi|298512125|gb|EFI36027.1| single-stranded-DNA-specific exonuclease RecJ [Desulfonatronospira thiodismutans ASO3-1] Length = 573 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 165/578 (28%), Positives = 265/578 (45%), Gaps = 23/578 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 W + + + I + +L R ++ + + FL+P +R L P Sbjct: 10 NWKLIQTSASPAHIARLAEDLEISPALCSILHQRGMTSLEEMQFFLSPGLRYLQPL-EDW 68 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +AA I + + +I ++GDYDVDG S AL+ F ++ Y+P R+ DGY Sbjct: 69 PQLQQAADLIASSHDSGNRIAVWGDYDVDGITSAALLKDFFQSKGIDIRCYLPHRVQDGY 128 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N + MEK EG + +ITVDCG + + + A G+ VI+ DHH SE PA +V Sbjct: 129 GLNMAGMEKLAGEGIKTLITVDCGISHHSEISRARELGMHVILTDHHLPGSELPPANVIV 188 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP L G F + + R L D+ LLDLVAL T+ D+VP Sbjct: 189 NPQCSPCPYP--GLAGVGSAFFLAAALNRTLP-----GPQMDIRDLLDLVALGTIADLVP 241 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITAENLGYMIGPSINAGGRIGE 313 L NR V GL++ PG+ AL E + I A +G+ +GP INA GR+ + Sbjct: 242 LDRANRILVKNGLLLLSEGRRPGIYALKEASGLGGTDSIGAGQVGFALGPRINAAGRLDD 301 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 LL+ D Q+ +A +L+ LN R+ E +L+ A + ++ + S +++ Sbjct: 302 PCQALELLLCRDLQQARTIAARLNTLNNERKKTEETILDMARQQA----NNYKDDSGLIL 357 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WHPG++G++A+RL E+F RP ++ E+G GSGRSI GF++ + Sbjct: 358 FDPDWHPGVLGIVASRLVEEFYRPCLVLT-RENGLIKGSGRSISGFNLY--QGLCSLKSH 414 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH+ AAGL++E N L F + + +D +L ++ + Sbjct: 415 LTGFGGHSQAAGLSLEPENLEELRTGFSRVISECIGPGPHQKEIVLDALLGLDELSPDFL 474 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFES-QDSETLQAIAFRVYGT 551 LE P+G NP PVF P K+ + H++ + + L+ +R Sbjct: 475 QELELLQPFGPENPRPVFLSPPLKVLDQSLFGKDKHVRFDLKDPESGVKLRGQFWRQGRN 534 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L +GK + + +N ++G +L + + Sbjct: 535 LKETSL---KGKNLTLAYTPGINVYQGLVSIRLNIREI 569 >gi|332299511|ref|YP_004441432.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas asaccharolytica DSM 20707] gi|332176574|gb|AEE12264.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas asaccharolytica DSM 20707] Length = 593 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 159/587 (27%), Positives = 261/587 (44%), Gaps = 23/587 (3%) Query: 18 WVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 W +E + IP + R+L R + + A+ F +PS+ L DP ++ Sbjct: 5 WQYTPFTREEEVGGSQLAHALRIPAVAGRLLYRRGIRTEADAQRFFHPSLEDLH-DPFLM 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIV 132 D D A +R+ +A+ E IMI+GDYDVDG +V+L+ ++L + + YIP R Sbjct: 64 QDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDD 123 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ GA LII VDCG + + + YA GID I+ DHH + A Sbjct: 124 EGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAA 183 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D LC GV F + +N P L LLDLVA++ D Sbjct: 184 AVLDPKRPDCHYPFEELCGCGVAFKFMQA----FGMNNGFPS-ASLFKLLDLVAVSIAAD 238 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V ++ NR GL R + GLK +I+ + IT ++ Y IGP INA GR+ Sbjct: 239 LVSVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMSDIIYKIGPRINASGRM 298 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+S+D++ ++ +D N RR ++ + ++A ++L ++ ++ Sbjct: 299 MNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEA-MQLLQVNPELAHQPIV 357 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WH G++G++A+R+ E RP+ ++ D + +GS RS+ G DI ++ A Sbjct: 358 VLYQPDWHKGVIGIVASRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEA--R 414 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+ GGH AAGLT+ + Q + +ID + V Sbjct: 415 DLLLNFGGHTYAAGLTLLPDKLPDFRAYIQGVNAVTTSDRAQSTPIEIDAEIELREVTQR 474 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFES----QDSETLQAIAF 546 L ++ PYG N P+F R V ++ + IAF Sbjct: 475 LYTTIQRFAPYGPDNYPPLFVTQQLYDGGASRAVGRNSEHFKVDAIPTLGSKKHCPGIAF 534 Query: 547 RVYG--TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + + N++ G QL + D P Sbjct: 535 NQAPAFRFMKKSSAGRAIAPFALVYQIDENHFNGIVSLQLLIKDVKP 581 >gi|313886811|ref|ZP_07820516.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas asaccharolytica PR426713P-I] gi|312923701|gb|EFR34505.1| single-stranded-DNA-specific exonuclease RecJ [Porphyromonas asaccharolytica PR426713P-I] Length = 593 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 159/587 (27%), Positives = 261/587 (44%), Gaps = 23/587 (3%) Query: 18 WVSLL-GQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 W +E + IP + R+L R + + A+ F +PS+ L DP ++ Sbjct: 5 WQYTPFTREEEVGGSQLAHALRIPAVAGRLLYRRGIRTEADAQRFFHPSLEDLH-DPFLM 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIV 132 D D A +R+ +A+ E IMI+GDYDVDG +V+L+ ++L + + YIP R Sbjct: 64 QDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDD 123 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ GA LII VDCG + + + YA GID I+ DHH + A Sbjct: 124 EGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAA 183 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R D LC GV F + +N P L LLDLVA++ D Sbjct: 184 AVLDPKRPDCHYPFEELCGCGVAFKFMQA----FGMNNGFPS-ASLFKLLDLVAVSIAAD 238 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V ++ NR GL R + GLK +I+ + IT ++ Y IGP INA GR+ Sbjct: 239 LVSVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMSDIIYKIGPRINASGRM 298 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 LL+S+D++ ++ +D N RR ++ + ++A ++L ++ ++ Sbjct: 299 MNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEA-MQLLQVNPELAHQPIV 357 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ WH G++G++A+R+ E RP+ ++ D + +GS RS+ G DI ++ A Sbjct: 358 VLYQPDWHKGVIGIVASRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEA--R 414 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+ GGH AAGLT+ + Q + +ID + V Sbjct: 415 DLLLNFGGHTYAAGLTLLPDKLPDFRAYIQGVNAVTTSDRAQSTPIEIDAEIELREVTQR 474 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFES----QDSETLQAIAF 546 L ++ PYG N P+F R V ++ + IAF Sbjct: 475 LYTTIQRFAPYGPDNYPPLFVTQQLYDGGASRAVGRNSEHFKVDAIPTLGSKKHCPGIAF 534 Query: 547 RVYG--TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + + N++ G QL + D P Sbjct: 535 NQAPAFRFMKKSSAGRAIAPFALVYQIDENHFNGIVSLQLLIKDVKP 581 >gi|222151520|ref|YP_002560676.1| hypothetical protein MCCL_1273 [Macrococcus caseolyticus JCSC5402] gi|222120645|dbj|BAH17980.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 753 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 166/576 (28%), Positives = 281/576 (48%), Gaps = 31/576 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W + I A + +K+ I +I ++L +R++ + A + + + DP + D Sbjct: 6 WTVKKPVDTIPAA--LIKKYDITEINRKILESRHIVTEAALHDIF--VADDIHDPFAMHD 61 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 KA +RI AI N+E I+++GDYD DG SV +++ L YIP+R +GYGP Sbjct: 62 MSKAVKRIQTAIDNNEMILVYGDYDADGVTSVTVLVNSLKSIGAKVGWYIPNRFTEGYGP 121 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + G LIITVD G + + A GIDVI+ DHH++ AYA+++P Sbjct: 122 NEQAFREAHDAGISLIITVDNGIQGHHEVNVANELGIDVIITDHHEIGQTLPDAYAILHP 181 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D HL GV + + + + + LL VA+ T+ D+V L Sbjct: 182 MHPDGSYPFHHLAGVGVSYKLACALNGQMNE-----------HLLGFVAIGTISDLVSLT 230 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G NRA V +GL GLKAL+++ + + IT E +G++IGP +NA GR+ ++ L Sbjct: 231 GENRALVKRGLKALNVDTPIGLKALLKQASFNGEITEETVGFIIGPRLNAVGRLDDARLA 290 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 LL D+ E E ++ ++D N R+ + S++ EQA V + + + IVV + Sbjct: 291 CELLQIDNEDEAEWMSEQVDQFNIERKEIVSSITEQALIDVEEKIANGNR--FIVVAKEG 348 Query: 378 WHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 W+ G++G++A+R+ E++ P+ ++ + G GS RSI + + ++ K Sbjct: 349 WNEGVLGIVASRITEQYHLPAIVLNIDYDKGYAKGSARSIAQVSMYDSLEE--TRNLITK 406 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH MAAG+T+ N RL ++ I +ID + S + I I+ + Sbjct: 407 FGGHHMAAGMTLPIENIERLEQALNNHLDTLIDGEIIQE-IEIDAAVEMSDITIKNINDM 465 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLG 554 + P+G P+ + N KL ++ + HL+MT ++ TL A+ + G Sbjct: 466 DKLRPFGTDFSAPLLSLMNAKLTDVKQIGQNQAHLKMTVQN----TLNALMWNEGARISG 521 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G ++++ G L +N W G+ + Q+ V Sbjct: 522 ----LPVGSQVNLAGTLQLNEWNGNVQPQMIVRHIK 553 >gi|256545118|ref|ZP_05472484.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus vaginalis ATCC 51170] gi|256399159|gb|EEU12770.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus vaginalis ATCC 51170] Length = 581 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 167/589 (28%), Positives = 280/589 (47%), Gaps = 30/589 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + L + I + A +L NR++ F+NP++ L DP +L Sbjct: 8 KWYIYNKKNNYLSNL---KNKNITKLEALILANRDIVDPKVVDSFINPTLAKLH-DPFLL 63 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA I++ + N E I IFGDYD DG +S ++ L + + + IPDR++DGY Sbjct: 64 KDMEKAIDLIIETMENGESIRIFGDYDQDGISSTMTLLDGLLYFYDDISYDIPDRVIDGY 123 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH---------QVKS 186 G + ++++ I L+IT D G T+ D ++ GI VIV DHH V+ Sbjct: 124 GISDRMIDRAIEANVSLVITCDNGITAIDQVKKLKENGIKVIVTDHHQVSKKEDGEWVEQ 183 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ++NP RLD+ LC AGV F ++ +Y+ L D L LL+ VA Sbjct: 184 ILPQADCVINPKRLDNTYPFDDLCGAGVAFKLIQALYQRLDGD-----MEYLYGLLEYVA 238 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCDVV L NR +V +GL +KAL+E + + ++A LG++IGP +N Sbjct: 239 MGTVCDVVSLTDENRIFVREGLKRINNTEKLAIKALVEENSWNREVSAYTLGFIIGPCMN 298 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L +L+ DD +++ A KL LN R+ + + LE+ + + Sbjct: 299 ATGRLSTAKLAIDMLMEDDIEKIRTYAKKLVSLNTERKELTNIGLEKTLEIIKDK--KYY 356 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMV 425 +I+V+ + I G++A R+KEKF +P+ ++ G GSGRSIE ++I K V Sbjct: 357 NDDIIIVDVENIEESICGIIAGRIKEKFNKPTIIMTQSSQNGILKGSGRSIEAYNIYKEV 416 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + IL GGH MA GL++ + + + ID + Sbjct: 417 FE--IKDILESFGGHPMACGLSIRSDKVEEFRQKLND--KSKLKKDDFVNIINIDAQIPI 472 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAI 544 +++ + L+ P+G NP FA N +++I ++ + M +++ ++AI Sbjct: 473 DKLSLEFAESLQRLEPFGKDNPKAKFADKNLFIKNINMIGKNNNTMKMILNKNGRDIEAI 532 Query: 545 AFRVYGTPL---GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F +F G R+ + +N + G + Q++++D Sbjct: 533 KFNAQKDYKYLSDKFKANIIGNRIDAVFYPDINEFNGRRNLQVKLIDIR 581 >gi|227431958|ref|ZP_03913978.1| single-stranded DNA-specific exonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352243|gb|EEJ42449.1| single-stranded DNA-specific exonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 655 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 171/587 (29%), Positives = 285/587 (48%), Gaps = 27/587 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72 + W L Q ++ + I ++ ++ R + A +L PS+ L DP Sbjct: 2 NQNNWNILP-QPSEKVVRQLSAQLNISQFMSTIVAQRGYTDPEAAFKYLQPSVEQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L D D+ R+ A + SEKI+++GDYD+DG S A+M+ L + YIP+R Sbjct: 60 MLLHDMDRTIERLQDAAFGSEKIVVYGDYDMDGVTSTAIMVEALEVLGADVTPYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN +K I +GAQLI+TVD G + +A++YA +QGIDVI+ DHH++ + AY Sbjct: 120 DGYGPNIDTYKKLIADGAQLIVTVDNGVSGQEAVEYAMSQGIDVIITDHHEMPATLPNAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL-LSLLDLVALATVC 251 A+++P G L AGV F V + L + V +L LLDLVAL + Sbjct: 180 AVIHPRHPKGQYPFGDLSGAGVAFKVAQAL---LNEGQPVEDQTELPTELLDLVALGEIS 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGG 309 D+V L NR V GL PGL A+++ + +E + + I P +NA G Sbjct: 237 DMVSLTDENRVLVSWGLKQINVSPRPGLTAVLKNAGKKDNEPVISETVSFKIAPRLNAVG 296 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G+++L +LL+S D +E +A +++ +N R+ + + A+ D+ + Sbjct: 297 RLGDASLSLKLLLSQDPEESTAIASEVEAINAQRQEIVEEVFGSAKQMA--LSDEYKNDQ 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+++ G WH GI+G++A+RL E +P+ +S + G GSGR+ FD+ + ++ Sbjct: 355 VLIIAGQDWHQGILGIVASRLVELLQKPTIVLSLMD-GVYKGSGRTFGDFDLYQFMN--T 411 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + GGHA A GL + L D + + + I I+ L+ + ++ Sbjct: 412 FHDLYDTFGGHASALGLAIFPEQLDVLKDQLRLNSAKL---QIHVKPISINTTLSVNEIS 468 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + L P+G GN PVF K+ + + H+++ E+ ++A+ F Sbjct: 469 TETYEELRLLEPFGTGNQQPVFGLQQPKINKVTTMGNLKQHIKLALENN----VEAVGFN 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + G + L +NY+RG K QL + + E Sbjct: 525 HPD--WVPMVANPVG--ISFAATLGINYFRGRKTIQLLLTAINTSEA 567 >gi|307297759|ref|ZP_07577565.1| single-stranded-DNA-specific exonuclease RecJ [Thermotogales bacterium mesG1.Ag.4.2] gi|306917019|gb|EFN47401.1| single-stranded-DNA-specific exonuclease RecJ [Thermotogales bacterium mesG1.Ag.4.2] Length = 1047 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 172/579 (29%), Positives = 282/579 (48%), Gaps = 18/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 W+ L + + + I +AR+LV R + + A FLNP + ++ DP + Sbjct: 3 KEWLLL--KPDDEAVNRLVEFMGIDAFLARLLVTRGIDNEVEAMKFLNPD-KTILHDPFL 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D A R I++ +E I++FGDYDVDG S AL+ + N + YIP R+ +G Sbjct: 60 LEDMPLAVRTIIETRDRNESIVVFGDYDVDGVTSTALLYLAMKRMGFNVSYYIPLRLEEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + ++ ++G L+ITVDCG TS+D +++A G +V+V DHH+VK PA A+ Sbjct: 120 YGLSKDAIKDLRDQGHSLLITVDCGVTSFDEIKFAKEIGFNVVVTDHHEVKDLLPPADAV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R DD L GV F +LV + L P++ LD+VAL T+ D+V Sbjct: 180 VNPKRPDDDYPFKGLAGVGVAFKLLVALNETL----HCPIDP--EEYLDIVALGTIADIV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL NR V +G + GLKAL+ + S +TA+++ + I P +NA GR+ Sbjct: 234 PLRDENRYIVKEGTAKIQSSPLLGLKALLSYLRIPSENLTAQDIAFKIAPKLNAAGRMDS 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + + LLIS+D A +L NQNR+ +E+ + EQ E + + +V+ Sbjct: 294 AIVALELLISEDMDSAMNTASRLLKHNQNRQTIEAKIFEQTERDL-ENTASFKDDFALVI 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 +GD WH G++G++A+RL +P F I+ GS RS G I +++ G+ Sbjct: 353 DGDNWHLGVLGIVASRLVSIHNKPVFLIATNGSDG-KGSARSPAGVSIISLLNEV--SGL 409 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH MAAG ++++ + +D VL ++ +++ Sbjct: 410 LREFGGHEMAAGFSIDKEKISEFRSAINDAYIKLYGLKQPVFKIDVDDVLTLDSITPSIL 469 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 D LE P+G NP P F ++ ++ H+++ S D +TL AI + + Sbjct: 470 DKLELLRPFGHSNPEPKFLIKGLNIEKAKMFGSGSDHVKLILRSGDRKTL-AIGYNMGTM 528 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ ++ + + G + +L + DA Sbjct: 529 FDDFKYVKPNLLKVDAIASIKNDNLYGLQSVKLSLSDAR 567 >gi|171910566|ref|ZP_02926036.1| single-stranded-DNA-specific exonuclease RecJ [Verrucomicrobium spinosum DSM 4136] Length = 620 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 171/596 (28%), Positives = 280/596 (46%), Gaps = 25/596 (4%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHA--IPDIVARVLVNRNVSID-YAKDF 60 + L S RW+ + +L + +P ++ R+L R ++ + AK F Sbjct: 44 RPLLMPISSQKAVRWILEPVDPEVLASLR-STTLGATLPPLLVRLLALRGLATEAQAKGF 102 Query: 61 LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS 120 L P + L DP IL +A RI+ A+ E+++++GDYDVDG S+ LM L Sbjct: 103 LQPRLAEL-GDPFILPQMRQAVDRILLAVDRQEQVVLYGDYDVDGVTSLTLMTLVLQAYG 161 Query: 121 VNANMYIPDRIVDGYGPNPSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVIV 178 + + ++P R+ +GYG + + + E L+I +DCG+ S + +G+D I+ Sbjct: 162 LQPHAFLPLRMEEGYGLSHDGLLRCFEEHGKPALLIAMDCGTVSVAETDWLQQEGVDCII 221 Query: 179 IDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL 238 +DHH+ ALVNP L+ +G + C G+VF + + + R D FDL Sbjct: 222 VDHHEPAHRLPTCVALVNPK-LEAHTGLTYFCTVGLVFKLTHALLKTRRLD-----TFDL 275 Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 LDLVA+ TV D+VPL NRA V KGL GL AL + + I A ++G Sbjct: 276 KEHLDLVAMGTVADLVPLKDENRALVRKGLEKLATTRRVGLCALKQVAGVDGFIQAHHIG 335 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 Y +GP +NA GR+ + LL+ +D Q A LD N+ R+ +ES ++A A + Sbjct: 336 YRLGPRLNAAGRLDTAQTALDLLLCEDPQFARECADLLDAHNRERQDVESVAQKEALAMM 395 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 + +A+ IV+ WH G+VG++A+RL RP+ ++F +DG G GSGRS+ G Sbjct: 396 AADPT-LGEAACIVLGSRSWHQGVVGIVASRLMRDHHRPTLLLAFGQDGHGKGSGRSVTG 454 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 + + +L+KGGGH MA G++++ N + + A TP Sbjct: 455 ISLVAALDQC--RHLLLKGGGHPMAVGVSLKEENLADFRAAMSAAVESQITADELTPRLH 512 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK-LQSIRVVNLAHLQMTFESQD 537 + ++ S + ++ P+G GN P+F + + +V+ H ++T Q Sbjct: 513 LSAEISLSDLTPRFLEQYTLLEPFGMGNHEPIFLCRGMEPILPGQVLKEKHWKLTLR-QG 571 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ A+ F L V + WRG + QL + + E Sbjct: 572 GQSRPAMWFNAP-------LNDIPPPPWDVALKVQRQVWRGQETWQLMISEVREAE 620 >gi|309809306|ref|ZP_07703175.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners SPIN 2503V10-D] gi|308170419|gb|EFO72443.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners SPIN 2503V10-D] Length = 761 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 159/572 (27%), Positives = 279/572 (48%), Gaps = 28/572 (4%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 ++ + + K+ + I A++ R+++ D DF + + DP ++ D K Sbjct: 4 KKKQAESLDKDLITKYKLSPIQAKLFAIRSINTDQQLDFWLNADETKLADPFLMHDMKKT 63 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 64 VDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVDFFIPNRFDDGYGPSLER 123 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ ++ G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N + Sbjct: 124 YQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MADNMSELLDLAMIGTIGDMVKVSGEGH 232 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL L Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GGH Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A GL++++ + +L + F+ + + + D LN + + + + G Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKVG 466 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YLD 519 Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|223933271|ref|ZP_03625261.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis 89/1591] gi|302024044|ref|ZP_07249255.1| single-stranded-DNA-specific exonuclease [Streptococcus suis 05HAS68] gi|330832497|ref|YP_004401322.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis ST3] gi|223898085|gb|EEF64456.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis 89/1591] gi|329306720|gb|AEB81136.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus suis ST3] Length = 737 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 178/591 (30%), Positives = 285/591 (48%), Gaps = 32/591 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 + W L G + + I +K + + A++L R + S + FL PS+ L DP Sbjct: 5 NYDWQLLTGFSD-EQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D DKA RI +AI + E+I+I+GDYD DG S +++ L +Y+P+R D Sbjct: 63 LLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTD 122 Query: 134 GYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYGPN S+ + FI + LI+TVD G ++A+ YA G+DV+V DHH ++ AY Sbjct: 123 GYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQEMGVDVVVTDHHSMQETLPNAY 182 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + HL GV F + + + D LLDLVA+ T+ D Sbjct: 183 AIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHAD-----------LLDLVAIGTIAD 231 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +V L NR V GL + ++ GL+ LI+ I I E +G+ + P +NA GR+ Sbjct: 232 MVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRL 291 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + N LL D +E +A+ +D N R+ + A+ ++A+ + Q V Sbjct: 292 DDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDVVQAIYDEAKTMLR------QDRPVQ 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ + W+PG++G++A RL E+ +P +S EDGK GS RS+E DI + + Sbjct: 346 VLAKEGWNPGVLGIVAGRLLEELQQPVIVLS-IEDGKAKGSARSVEAVDI--FKALKDHQ 402 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + + GGHA AAG+T+E L + L + +D L+ + + Sbjct: 403 DLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLD 462 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549 + E PYG N PVF + +++S R + HL++ S+ + +AF Sbjct: 463 TLKSFEKLAPYGRDNKKPVFYIRDFQVESARTMGQNNAHLKLRI-SKGAAGFDVVAFGKG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L S+ K + + L VN W G+ QL ++DA + + Sbjct: 522 NL----ALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVNGVQLYNIR 568 >gi|150019133|ref|YP_001311387.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium beijerinckii NCIMB 8052] gi|149905598|gb|ABR36431.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium beijerinckii NCIMB 8052] Length = 588 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 174/601 (28%), Positives = 287/601 (47%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + I++K+A+ ++V+R++VNRN+ D + ++NP + Sbjct: 4 RWFIKNIKADY---KYISKKYALSELVSRLIVNRNIISDEMIRSYINPDFDKFHEA-REM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +K+ + + I KI I GDYDVDG S+ ++ L C+ N + IPDRI DGY Sbjct: 60 KDLEKSVDILREKIKAQNKIRIVGDYDVDGVISIYILYSALKRCNANVDYEIPDRIKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N +++++ +G I+T D G ++ D ++YA GI VIV DHH + E Sbjct: 120 GINMNIIKQAKEDGVDTILTCDNGISAIDQIKYAKELGITVIVTDHHDIPFVEKENNVRE 179 Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A+VNP + + LC AGV F ++ ++Y D + ++ + Sbjct: 180 FISLSADAVVNPKQSECNYKFKQLCGAGVAFKLVEILYETFNIDK-----KECYKFIEFL 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATVCDVV L+ NR +V KGL + N GL+ LI ++ +LG++IGP Sbjct: 235 AIATVCDVVDLVDENRIFVKKGLELINSTTNLGLQELIRECELTEKTLSVYHLGFIIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + G +LL+SDD +E LA +L LN++R+ M +E A + + Sbjct: 295 INASGRLDSAKRGLKLLLSDDEEEAVRLAKELVKLNEDRKDMTMNGVEAAVEII--EKSG 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V V+ H + G++A R+KEK+ P+ I+ E G GSGRSIE +++ Sbjct: 353 MINDKVFVIYIPDIHESLAGIIAGRIKEKYNVPTLVITKAEHGV-KGSGRSIEEYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +L K GGH MAAG +++ N + + I+ ID VL Sbjct: 410 EELIKCKDLLEKFGGHPMAAGFSLKEENIDEFRRRLNE--NTILKDEDLLRKVTIDSVLP 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 A+N +I+ LE P+G N P+FA N L ++ L++ +++ ++ L Sbjct: 468 LDAINYDVINDLERLEPFGKSNSKPLFAEKNINLLKATILGKNRNVLKLKLKTRMNKALD 527 Query: 543 AIAFRVYGTPLGEFLMQSRGK-------------RMHVTGHLCVNYWRGSKRCQLRVLDA 589 AI F E + + + + + VN + G+ Q+ + + Sbjct: 528 AIYFGDIEKFEEEVSSKYGNEELQKLYNGEYNHVNLDLVFYPNVNEYNGNTTIQIVIQNY 587 Query: 590 S 590 Sbjct: 588 R 588 >gi|282896523|ref|ZP_06304543.1| RecJ exonuclease [Raphidiopsis brookii D9] gi|281198629|gb|EFA73510.1| RecJ exonuclease [Raphidiopsis brookii D9] Length = 581 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 275/582 (47%), Gaps = 23/582 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLI 74 RW ++ A + + + I+ ++L+NR + F+NP L Sbjct: 13 QRWHI--AKQNQELAQNLASVNNVSPIIGQLLINRGMETPEIATRFINPECINLPSPLDE 70 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D + + AI N EKI I GDYD DG S AL++R L N + IP R+ +G Sbjct: 71 FPDLVISVELLASAIRNHEKIAICGDYDADGMTSTALLLRSLGALGANIDYAIPSRMHEG 130 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++E+F EG LI+TVD G +++ + A G+ VI+ DHH + + A A+ Sbjct: 131 YGINKRIVEEFHREGVSLILTVDNGIAAFEPIARAKELGLKVIITDHHDLPPQLPIADAI 190 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + S L GV +++ V + + L + + + +LDL L T+ D+ Sbjct: 191 LNPKLISLSSPYRGLAGVGVAYVLAVCLAQHLEK-----ITGLVQPMLDLFTLGTIADLA 245 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIG 312 PL G+NR ++ +GL + PG++ALI+ + + E++G+ +GP INA GRIG Sbjct: 246 PLTGVNRRWIKRGLKSLYKSNLPGVQALIQVSGVQDSKSLKPEDIGFRLGPRINAVGRIG 305 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVI 371 + LL +DD AM+ + +N R+ + + +A V ++ Q V+ Sbjct: 306 NPQIVIELLTTDDMGIALERAMQCEQINAERQKICEEIQGEAILLVENLYAQNLHQDRVL 365 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV D WH G++G++A+RL E++G P F ++E + GS R I F++ + F Sbjct: 366 VVVKDNWHHGVIGIVASRLVERYGVPVFIGTYENNDLVRGSARGIPEFNVFDALEF--SS 423 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L K GGH AAG ++ N +FA+ + P+ +IDG +N +N Sbjct: 424 DLLHKHGGHKAAAGFSLPAANLENFRLRLSEFANQCLEVQHLKPLLRIDGQINFCQINRD 483 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE---SQDSETLQAIAFRV 548 L L P G NP+P+F P ++ +++ +++T ++A+A+R Sbjct: 484 LFQQLNILHPCGIENPDPMFWTPQVRVVEQQMIGKGSIKLTLAQIIDNTRYEIRALAWRW 543 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L N + G+ +L ++ Sbjct: 544 GDYF-------PLPFTIDIAYKLRENNFNGANDIELELVGVR 578 >gi|225017245|ref|ZP_03706437.1| hypothetical protein CLOSTMETH_01171 [Clostridium methylpentosum DSM 5476] gi|224950020|gb|EEG31229.1| hypothetical protein CLOSTMETH_01171 [Clostridium methylpentosum DSM 5476] Length = 678 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 176/585 (30%), Positives = 287/585 (49%), Gaps = 23/585 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +W G E R I + + +A +L R + D D L + P L Sbjct: 4 RKWQYRAGAE--ERIQEIEETFGVSRFLAGILATRGLQDDQINDLLG---ETELESPFAL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA RI +A+ EKI ++GDYD DG S A++ +LS YIP+R GY Sbjct: 59 KDMDKAVERINRAVEAGEKIAVYGDYDCDGITSTAVLCTYLSSIGAEVTHYIPERDDGGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++ EG QL+ITVD G T+ + YA G+++I+ DHH+V A A++ Sbjct: 119 GLNRPALDHLKGEGVQLLITVDNGITAVEEADYAAQLGMELIITDHHRVGDTLPQAVAVI 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P R D S L GV F ++ + +D F DLVA+ TV DVVP Sbjct: 179 DPQREDCPSRYKFLAGVGVAFKLVAAM-----EDGDYESTF--SYFGDLVAIGTVGDVVP 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGES 314 L G NR V +GL N GL A+ ++ I + +T++ + + I P INA GR G + Sbjct: 232 LTGENRTIVKRGLKQIEFSENIGLGAIFDKAKIAKTNVTSQYIAFGIVPRINAAGRFGMA 291 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N LL+ +D ++ + +A +L+ LN R+ +E + +Q ++ + V+V Sbjct: 292 NKVFDLLMCEDEKQCKKMATELNQLNMQRQEIEQEIQQQIREELTANPRKLYNR-VLVFA 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + W GI+G+++AR+ E +GRPS ++ EE G GS RS++GF I + + Sbjct: 351 REGWPHGIIGIVSARVTETYGRPSVLLAIEEGGVARGSARSVDGFSIYEA--LDANRSLC 408 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH+ AAGLT++ N L +A + P ++ID +NAS + + ++ Sbjct: 409 EKMGGHSAAAGLTIKAENIPALEQGLNDYAREHC-ERMPEPTYQIDFTVNASDLTVQNVN 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+GA +P+P+F N +L ++ + H+++ ++ +QAI F V + Sbjct: 468 SLAMLEPFGAQSPSPLFLIKNARLDAVVPLSGGKHIKLKLITETG-IIQAIYFGVQRS-- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 G +++ L ++++ G + ++V D PV + Sbjct: 525 --CFYYQPGAVLNLLVALDISFFNGVQTVSVKVKDVRPVTFEQYK 567 >gi|312871401|ref|ZP_07731496.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 3008A-a] gi|311093054|gb|EFQ51403.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LEAF 3008A-a] Length = 761 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 159/572 (27%), Positives = 279/572 (48%), Gaps = 28/572 (4%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 ++ + + K+ + I A++ R+++ D DF + + DP ++ D K Sbjct: 4 KKKQAESLDKDLITKYKLSPIQAKLFAIRSINTDQQLDFWLNADETKLADPFLMHDMKKT 63 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 RI QAI EKI ++GDYD DG + ++M+ LS + + +IP+R DGYGP+ Sbjct: 64 VDRINQAIDKGEKITVYGDYDADGITATSIMVESLSILGADVDFFIPNRFDDGYGPSLER 123 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ ++ G +LIITVD G T + + YA G+D IV DHH + E AYA+V+ N + Sbjct: 124 YQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIFQDEIPDAYAIVHCNYPN 183 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 C AGV + + + + ++ LLDL + T+ D+V + G Sbjct: 184 QDYPFDDYCGAGVAYTICRAL-----------MADNMSELLDLAMIGTIGDMVKVSGEGH 232 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL + PGL+ALI+ + I A ++G+ I P INA GR+ ++NL L Sbjct: 233 IIVKRGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICPRINAVGRLADANLAVNL 292 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ DD +E E LA ++ LN R+ + + E E ++ Q Q +V+ +H Sbjct: 293 LLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQYGWQSKKTLVLYDHNFHE 350 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ + +L K GGH Sbjct: 351 GVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFNALIKLKGT-VLTKFGGH 409 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A GL++++ + +L + F+ + + + D LN + + + + G Sbjct: 410 EFACGLSLKKDSLVKLRNCFESSFQPVATSELVK---MYDDELNLNDLTLDTYRQMAKVG 466 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP PVF+ N + + + H++M + +E L I F +L Sbjct: 467 PFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-LDLIGFDRG------YLD 519 Query: 559 QSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 + +H+ L +N W + Q + D Sbjct: 520 TNILPYVHMIMVTLGINKWNNKAKLQGIISDF 551 >gi|323526606|ref|YP_004228759.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. CCGE1001] gi|323383608|gb|ADX55699.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. CCGE1001] Length = 568 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 180/568 (31%), Positives = 269/568 (47%), Gaps = 32/568 (5%) Query: 36 KHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 +H + ++AR+ R V D + + L+P P L CD AA + AI + Sbjct: 19 RHGLHPVLARLYAARGVCLPDEIET----GLARLVP-PAALKGCDGAAVLLADAIEQKRR 73 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFINEGAQ 151 +++ DYD DGA + A+ +R L + +P+R GYG P ++ + + + Sbjct: 74 MLVVADYDCDGATACAVAVRGLRMFGGQIDYLVPNRFEYGYGLTPEIVALAAQRASGKPE 133 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G S + ++ A GIDV+V DHH + A A+VNPN+ + Sbjct: 134 LLITVDNGIASVEGVEAANALGIDVLVTDHHLPGDQLPAARAIVNPNQPGCEFPSKCMAG 193 Query: 212 AGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 GV+F VL+ + LR+ L LLDLVAL TV DVV L G NR V +GL Sbjct: 194 VGVMFYVLLALRAELRRRGAFGDAFPEPRLDGLLDLVALGTVADVVKLDGNNRVLVAQGL 253 Query: 269 MVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R+ A + R A +LG+ +GP +NA GR+ + +LG L +DD Sbjct: 254 QRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSDMSLGIECLTTDDV 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 LA +LD +N+ RR +E+ M +QA + + D A+ I + WH G++G++ Sbjct: 314 GRAWELAQQLDTMNRERREIEAGMQQQALDDLSS--IDPDGATTITLFNPAWHQGVIGIV 371 Query: 387 AARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAM 442 A RLKEKF RP+F + +D GSGRSI GF + + E G++VK GGHAM Sbjct: 372 AGRLKEKFHRPAFTFALADDSGRLVKGSGRSIAGFHLRDALDLISKREPGLIVKFGGHAM 431 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AAGLT+ + R F+ + + + DG L + ++ML+ A + Sbjct: 432 AAGLTLATADVPRFTAAFEAVGREWLTDDALSRTVETDGELEDAYFTPQFVEMLD-AAVW 490 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 G G P PVF+ + S +V HL++ + + AI F T Sbjct: 491 GQGFPAPVFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHTDT---------LP 539 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 540 ARTTVAYRLASDTWNGVSRVQLIVEHAA 567 >gi|27468236|ref|NP_764873.1| single-strand DNA-specific exonuclease [Staphylococcus epidermidis ATCC 12228] gi|57867139|ref|YP_188775.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis RP62A] gi|251811041|ref|ZP_04825514.1| recombination protein RecJ [Staphylococcus epidermidis BCM-HMP0060] gi|282875940|ref|ZP_06284807.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis SK135] gi|27315782|gb|AAO04917.1|AE016748_151 single-strand DNA-specific exonuclease [Staphylococcus epidermidis ATCC 12228] gi|57637797|gb|AAW54585.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis RP62A] gi|251805459|gb|EES58116.1| recombination protein RecJ [Staphylococcus epidermidis BCM-HMP0060] gi|281294965|gb|EFA87492.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis SK135] Length = 757 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 153/591 (25%), Positives = 275/591 (46%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W Q + + + + + IV +VL ++N+ ++ + + D Sbjct: 4 SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + + G+DVIV DHH++ A+ Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +GL + +KA++ + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRYIVKQGLKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD+ +E E LA +++ N R+ + S + ++A Q Q ++ Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIK--QGHLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ +E GS RSIE + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L + + P K+D L +NI Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I + P+G +P+F + ++S + + HL++T L A+ + Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ +H+ G L +N W G++ Q + D + + + Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568 >gi|227514770|ref|ZP_03944819.1| recombination protein J [Lactobacillus fermentum ATCC 14931] gi|227086879|gb|EEI22191.1| recombination protein J [Lactobacillus fermentum ATCC 14931] Length = 765 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 171/582 (29%), Positives = 266/582 (45%), Gaps = 32/582 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + +P +A +LVN+ + S D A+ +LNP L P Sbjct: 4 SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D+A RI+ A+ EKI ++GDYD DG + LM L + Y+PDR Sbjct: 62 DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ ++ I G QLI+TVD G A++YA QG+DV++ DHH + + PA Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P L GV F V + + +LDLVA+ + D Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311 +V L G N A V GL R+ PGL AL++ + +T ++G+ + P +NA GRI Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ G LL + D +E E LA ++D N+ R+ + + ++A A Q Q + Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G WH G++G++AA + + G+P+ S E + GSGRS+EG D+ + Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVEGLDL--FAALDQH 403 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGHAMA G++ E L + P KI L + Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTQ 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L ++ P+G GN P + +V+ HL++ L +AF Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV---GQPPLDVVAFG- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + G L +N WRG CQL + D + Sbjct: 520 ---KASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVA 558 >gi|256830507|ref|YP_003159235.1| single-stranded-DNA-specific exonuclease RecJ [Desulfomicrobium baculatum DSM 4028] gi|256579683|gb|ACU90819.1| single-stranded-DNA-specific exonuclease RecJ [Desulfomicrobium baculatum DSM 4028] Length = 574 Score = 365 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 172/587 (29%), Positives = 284/587 (48%), Gaps = 27/587 (4%) Query: 12 SISGFRWVSLLGQEGINRALA----ITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIR 66 S + W ++A I ++ + ++ ++ R ++ + FL+P +R Sbjct: 2 SDTQADWKLKTPAPEAELSVAQQRGIAERLEVSPLLVHLMSLRGLACESDMDKFLSPGLR 61 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L P + A I A+ + +I ++GDYDVDG + L++ F++ V + Y Sbjct: 62 YLHPL-DKWPGIEAGAALICAAVKENRRIAVWGDYDVDGITATTLVIDFMARRGVEVSHY 120 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IPDR+ GYG + + + +G L++TVDCG + + ++ A G+ VI+ DHH Sbjct: 121 IPDRLDFGYGLHVDGIRELAAQGVGLLLTVDCGIANIEEIREAKALGMHVIITDHHLPGQ 180 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A ++NP +L GV FL++ + R+L D+ LDLVA Sbjct: 181 DLPEAEVIINPKLEG--WPTPNLAGVGVAFLLMGAVNRLLP-----GAAVDIRDFLDLVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITAENLGYMIGPS 304 L TV DVVPL NR V GL++ + PG++AL E + ++G+ + P Sbjct: 234 LGTVADVVPLDEQNRILVKNGLLLIKEGRRPGIQALKEISGLGPDDNVGTGSIGFALAPR 293 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GRIG+ +L R+L++ D +E LA KLD LN R+L E +LE+A + +Q Sbjct: 294 INAAGRIGDPDLAVRMLLATDPEEARQLATKLDKLNAKRKLEEQRILEEAITQAESQLH- 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 +V+ + WH GI+G++A+R+ E+F RP ++ +E+G GSGRS FD+ + Sbjct: 353 ---LPGLVLHSEHWHSGIIGIVASRIVERFHRPCLILT-KENGIFKGSGRSTPTFDLYQA 408 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + L K GGH AAGL +E L + F + A PV ++D L Sbjct: 409 LLSCKQ--CLYKFGGHRQAAGLKLEPFQLANLKNLFAWAVEEQLGANPAPPVLELDAELP 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFES-QDSETLQ 542 + + L+ LE PYG GNP P+F P + R HL++ D ++ Sbjct: 467 FALITATLLKELELLQPYGQGNPRPIFLSPPLSILKHRFFSQKKHLELHLSDSSDGTNMR 526 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 A+A+R GK++ + ++ + G ++ +L V D Sbjct: 527 AVAWRQGERWQD---ASFTGKQIKIAYTPRLSKFNGLQQIELAVQDI 570 >gi|163857077|ref|YP_001631375.1| single-stranded-DNA-specific exonuclease [Bordetella petrii DSM 12804] gi|163260805|emb|CAP43107.1| single-stranded-DNA-specific exonuclease [Bordetella petrii] Length = 695 Score = 365 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 182/580 (31%), Positives = 270/580 (46%), Gaps = 30/580 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 R L I ++AR+ R V+ P L+P P LT Sbjct: 136 TVRSTNPDACRTLEAA---GIHPLLARLWAARGVTHPDQTRLAWP---ALLP-PAGLTHV 188 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 D AAR + AI ++++I DYD DGA + A+ +R L N + +P+R GYG + Sbjct: 189 DHAARILADAIAQGKRLLIVADYDCDGATACAVGLRALRAFGANVDFLVPNRFETGYGLS 248 Query: 139 PSLMEKFINEG---AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 P++++ LIITVD G S D + A GI V+V DHH A A+V Sbjct: 249 PAVVDLACAHHAGKPDLIITVDNGIASVDGVAAANAAGIGVVVTDHHLPGDTLPDALAIV 308 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253 NPN+ +L GV+F +++ + LR+ P + L +L DLVAL TV DV Sbjct: 309 NPNQPGCGFPSKNLAGVGVIFYLMLALRAELRRRGVYPPDGGPRLDALSDLVALGTVADV 368 Query: 254 VPLIGLNRAYVVKGLMVARR-QGNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRI 311 V L NR V +GL R + PGL+AL +LG+ +GP INA GR+ Sbjct: 369 VKLDANNRLLVTQGLQRMRAGRMQPGLRALFAVAAREPRSACGFDLGFALGPRINAAGRL 428 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +LG L +DD + +A +LD +N+ RR +E+ M EQA + + Sbjct: 429 ADMSLGIACLTTDDEAQALDMARQLDQINRERRGIEAEMREQA--MAAMDAAGSANGATV 486 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429 V WH G+VGL+A+RLKEK+ RP+ A + D + GSGRSI + ++ Sbjct: 487 CVFDPSWHQGVVGLVASRLKEKYWRPTLAFAPAGDDELRGSGRSIPDVHLRDVLDLVSKR 546 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 G++ K GGHAMAAGLT+ R +F F + P+ + DG L + N Sbjct: 547 HPGLIRKFGGHAMAAGLTLGRDDFSVFGPAFDAAVRELTGRDRFEPLLETDGSLESGYAN 606 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +GAG P+F +++ R+V HL+++ E + + AI F Sbjct: 607 ADVATLLQQ-QVWGAGFAPPLFLDE-FTVRNQRLVGEKHLKLSLE-RGHQRFDAIWFGHD 663 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 QS +R+ L N W G QL + A Sbjct: 664 ---------QSLPERIQAAYRLEPNVWNGMVSAQLVIEHA 694 >gi|184155105|ref|YP_001843445.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum IFO 3956] gi|183226449|dbj|BAG26965.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum IFO 3956] Length = 765 Score = 365 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 170/582 (29%), Positives = 266/582 (45%), Gaps = 32/582 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + +P +A +LVN+ + S D A+ +LNP L P Sbjct: 4 SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D+A RI+ A+ EKI ++GDYD DG + LM L + Y+PDR Sbjct: 62 DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ ++ I G QLI+TVD G A++YA QG+DV++ DHH + + PA Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P L GV F V + + +LDLVA+ + D Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311 +V L G N A V GL R+ PGL AL++ + +T ++G+ + P +NA GRI Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ G LL + D +E E LA ++D N+ R+ + + ++A A Q Q + Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G WH G++G++AA + + G+P+ S E + GSGRS++G D+ + Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDL--FAALDQH 403 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGHAMA G++ E L + P KI L + Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTQ 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L ++ P+G GN P + +V+ HL++ L +AF Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV---GQPPLDVVAFG- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + G L +N WRG CQL + D + Sbjct: 520 ---KASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVA 558 >gi|114320970|ref|YP_742653.1| single-stranded-DNA-specific exonuclease RecJ [Alkalilimnicola ehrlichii MLHE-1] gi|114227364|gb|ABI57163.1| exonuclease RecJ [Alkalilimnicola ehrlichii MLHE-1] Length = 577 Score = 365 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 187/567 (32%), Positives = 273/567 (48%), Gaps = 23/567 (4%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ RV R + L + L+P P L D A R + +A+ +I + Sbjct: 20 LPGVLQRVYARREIRSA---RELELGLAHLLP-PGDLAGIDPATRLLAEALRRQHRICVV 75 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GD+D DGA S AL +R L +P+R GYG +P L++ + LIITV Sbjct: 76 GDFDADGATSCALALRGLRAMGARRIGYLVPNRFEYGYGLSPELVDLAVREQDPDLIITV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A +GI V+V DHH A A+VNPN G L GV+F Sbjct: 136 DNGISSLEGVAAARARGIGVLVTDHHLPGDALPAADAIVNPNLPGQAFGSRALAGVGVMF 195 Query: 217 LVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 VL + LR+++ L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 YVLAALRSHLRREDWFADEHLPEPRLDRLLDLVALGTVADVVPLDHNNRILVAQGLGRIR 255 Query: 273 -RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 QG PG++AL+E + A +LG+ GP +NA GR+ + LG L++DD + Sbjct: 256 TGQGCPGIRALLEVAGRDPDRLVASDLGFAAGPRLNAAGRLTDMALGVECLLTDDPRRAR 315 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD---IQQASVIVVEGDRWHPGIVGLLA 387 LA +LD LN+ RR +E+ M ++A A + D Q+ + + WH G++G+LA Sbjct: 316 SLAARLDGLNRERREIEARMTDEALALLDHLGDPVSGGQRPLGLCLMDGAWHQGVIGILA 375 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445 +RLKE++ P A + +G GSGRS+ G + ++ G++ K GGHAMAAG Sbjct: 376 SRLKERYQCPVVAFAPTGEGMLKGSGRSVPGLHLRDLLEAISRRHPGLVGKFGGHAMAAG 435 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 L + +F R + F+ + + DG L + +N+ L AGP+G G Sbjct: 436 LNLRAADFPRFREAFEAALAEALRDGLPDAEVASDGELTGAELNLDAARQLREAGPWGQG 495 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKR 564 P PVF ++ R+V H++ D L+AIAF G Sbjct: 496 FPEPVFDGC-FQVTGSRIVGERHVRFNLAHPDGGGPLEAIAFNGVAQGWEAL----DGAT 550 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASP 591 + L VN+WRG +R QL V P Sbjct: 551 PRLAYRLDVNHWRGRERAQLVVEHVEP 577 >gi|293366408|ref|ZP_06613086.1| recombination protein J [Staphylococcus epidermidis M23864:W2(grey)] gi|291319442|gb|EFE59810.1| recombination protein J [Staphylococcus epidermidis M23864:W2(grey)] gi|329735199|gb|EGG71491.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis VCU045] Length = 757 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 153/591 (25%), Positives = 275/591 (46%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W Q + + + + + IV +VL ++N+ ++ + + D Sbjct: 4 SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + + G+DVIV DHH++ A+ Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +GL + +KA++ + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRYIVKQGLKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD+ +E E LA +++ N R+ + S + ++A Q Q ++ Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIK--QGHLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ +E GS RSIE + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L + + P K+D L +NI Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLRKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I + P+G +P+F + ++S + + HL++T L A+ + Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ +H+ G L +N W G++ Q + D + + + Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568 >gi|46445883|ref|YP_007248.1| putative ssDNA-specific exonuclease [Candidatus Protochlamydia amoebophila UWE25] gi|46399524|emb|CAF22973.1| putative ssDNA-specific exonuclease [Candidatus Protochlamydia amoebophila UWE25] Length = 594 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 148/580 (25%), Positives = 265/580 (45%), Gaps = 19/580 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILT 76 WV E + +I ++ + ++A++LV+R + D+L + L DP ++ Sbjct: 13 WVYPPMDEALK--ESIVKEFKLHPVIAQILVSRGFTSFQQIHDYLYAKLPELH-DPFLMA 69 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + +A R+ +AI + E I+I+GD DVDG L+ FL N Y+ +R Sbjct: 70 EMPQAVERVCRAIRDHENILIYGDNDVDGMTGTTLLTEFLQDLGANVFFYVSNRGALRQS 129 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 +E + +L+ITVDCG T+ + Q +DVI+ DHH+ + A +N Sbjct: 130 LIVEALEYALINNCKLLITVDCGITAAVEIAKVAAQNVDVIITDHHEPTDKIPHCVATLN 189 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVP 255 P +++ L GV F + I L + K+P + DL LDLVAL T+ D+ Sbjct: 190 PKLVNNPYPNRDLTGVGVAFKLAHGITNQLTSEGKIPPSKIDLKKYLDLVALGTISDMGS 249 Query: 256 LIG-LNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L+ NR V GL R+ GL L ++ + + + I P +N+ GRI + Sbjct: 250 LLDTENRILVRYGLRQLRKGKRMGLAKLFSICDVDLNDLNTFTIASKIAPRLNSLGRIAD 309 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 G ++L+ ++ E +A++LD+ N R+ +E M ++ + + ++++V Sbjct: 310 PRKGVQMLLVKNADLAEKMALELDLNNIERQKIERTMSSDVDSTIQQIPAILSNKAIVMV 369 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 D+WHPG++ +L+ R+ +++ RP+ I+ + G G GS RSI F + + I Sbjct: 370 -SDKWHPGVIAILSTRISKQYNRPTVMIA-IDKGIGKGSIRSIREFPLLPTLKEC--SDI 425 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH AAGLT++ + + + F A+ + +D + S + I Sbjct: 426 LINFGGHDFAAGLTIKEEHVEQFKNHFIASANKKLADTDVMSKLYLDAEIKFSELTFDFI 485 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 + PYG NP P+ + ++V HL++ E D L+ +A G Sbjct: 486 ESARLLEPYGNENPQPILYCDAWQTWPPKIVGKTHLKLYLEQGD-RVLEGVA---LGKAT 541 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ + ++ + +N QL + D +E Sbjct: 542 YSQQLRKKNLKLRIAFTPQIN----KSSIQLLIRDFKVLE 577 >gi|317495225|ref|ZP_07953595.1| single-stranded-DNA-specific exonuclease RecJ [Gemella moribillum M424] gi|316914647|gb|EFV36123.1| single-stranded-DNA-specific exonuclease RecJ [Gemella moribillum M424] Length = 751 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 159/581 (27%), Positives = 274/581 (47%), Gaps = 29/581 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 ++W+ + E L +++ I +A++L +R + I K F + DP + Sbjct: 5 YKWLYPINNENFLMQL---EEYNISKNIAKILDSRGIHEISEVKKFFSDDYEEGY-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +A RI AI N EKI+I+GDYD DG S L++ L N + YIP+R +G Sbjct: 61 MHDMKRAVDRINDAIENEEKILIYGDYDADGITSTVLLVETLISLGANVSSYIPNRFDEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN K I G LIITVD G + + A G DVI+ DHH+++ AYA+ Sbjct: 121 YGPNKEAFTKIIESGITLIITVDNGIAGVEEVNLANELGCDVIITDHHKIQDVIPSAYAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P D G L GV F + + I LLDLVA+ T+ D+V Sbjct: 181 IHPEHPDGNYPFGKLAGVGVAFKLAHALLEIFPD-----------FLLDLVAIGTIADMV 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L NR +V +GL + G+K L++ I+S + + +G+ I P +N+ GR+ + Sbjct: 230 SLTDENRIFVKQGLELINEDPRIGIKMLLDLSGITSKVDEQTIGFYIAPKLNSVGRMSSA 289 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LG L+++D+ + ++LA K++ N R+ + +++ +K+ + D + VI++ Sbjct: 290 KLGLSFLMAEDAYDAKILAEKIEEYNIQRKSVTEDIVKDIISKI--ENSDKKNKDVIMIY 347 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 GD +H G++G++A+ + E++ RP ++ ++ G GS RSI F+I V+ Sbjct: 348 GD-YHEGVLGIVASNIVERYQRPVLIMTNKD-GILKGSARSIFDFNIYTAVNK--IGDKF 403 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG + E NF + + K ID V + ++ ++ Sbjct: 404 IAYGGHTLAAGFSFEENNFETIEEELNKDFAEYKNTNELKSTKTIDIVTSLEEMSYQFLN 463 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L++ PYG P N K+ ++++T + +L+ I+F Sbjct: 464 SLDALKPYGMDFEKPTILLENAKILDKAYFGAEKQYMRLTIADEVG-SLECISF----KE 518 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F + + + L N + G + Q ++D E Sbjct: 519 NSAFNSIEKNDIIDLLCTLDKNNFNGRTKLQAHIIDMEIKE 559 >gi|329667134|gb|AEB93082.1| hypothetical protein LJP_0754 [Lactobacillus johnsonii DPC 6026] Length = 756 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 164/577 (28%), Positives = 281/577 (48%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQRQANNLDQ---ELIEDYGLTDIQAKLFALRGINTAEKIDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ A++ V+ Sbjct: 119 PNMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI++ ++ ITA ++G+ I P +NA GR+ ++ Sbjct: 228 TGEGHIIVKRGLEILNQTERPGLRALIKQAGLTMGKITATDVGFNIAPRLNAVGRLANAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A K++ LN R+ + + + E A+V Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEKIATKIEELNNERKELTTKVYEDCLAQVENNGW--QHRNTLVIYN 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E G+ GSGRS EGF++ + ++E +L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDEAGELKGSGRSSEGFNLFNALEP-MKEDLLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ L F+ + D LN V I Sbjct: 405 KFGGHDFACGLSLKADKLEELRVRFEDSFKPSTDLEVKN----FDFELNLKEVTPDTIAE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP P+F+ ++S+ + H++ T E + L I F L Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNAGK-LTIIGFN--KGFL 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L+ + + L +N W+ Q + Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551 >gi|262195619|ref|YP_003266828.1| single-stranded-DNA-specific exonuclease RecJ [Haliangium ochraceum DSM 14365] gi|262078966|gb|ACY14935.1| single-stranded-DNA-specific exonuclease RecJ [Haliangium ochraceum DSM 14365] Length = 577 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 180/587 (30%), Positives = 273/587 (46%), Gaps = 30/587 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W ++ + +I AR L R + A+ +L P + L P P+ LT Sbjct: 5 WTIRT--VDATTVSSLAAGLGVSEITARCLAGRGIADASSARSYLAPRLNQLRP-PVGLT 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 A R+ +A+ E+I IFGDYDVDG + ALM FL + + R GYG Sbjct: 62 GLSTAVERLARAVSQGERIGIFGDYDVDGVTTAALMASFLEQLGASCVPRVARR-DAGYG 120 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAYAL 194 + + + G ++IIT DCG++ DA++ A +G+DVIV+DHH V +E+ PA AL Sbjct: 121 FGSAEADAMASAGCRVIITGDCGTSDIDAIERAAARGVDVIVVDHHTVPSATEQHPALAL 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVC 251 VNP R D + + G+ F ++ + L DL LLDLVAL TV Sbjct: 181 VNPLRADSTFPFRAMASVGLAFYLMAALRTELSGRGYFRSGREMPDLRELLDLVALGTVA 240 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER--VNISSPITAENLGYMIGPSINAGG 309 D+VPL G NR GL + PG+ AL+ V I +G+ +GP +NA G Sbjct: 241 DLVPLQGENRILAATGLQYLAQGRRPGVAALMALAKVGGDRGIDERAIGWRLGPRLNAPG 300 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G++ LL++ D+ E E A +++ N+ RR ++ + EQ + Sbjct: 301 RMGDAAPALSLLLARDAAEAEHWAAQVEDANERRRAAQAEVWEQVLGML----PSADPGP 356 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFA 428 +VV GD W GI G++A++L E F RPSF I+ + G GSGR+ +GF + ++++ Sbjct: 357 AVVVAGDGWPSGITGIVASKLNEMFERPSFVIAVDPVSGLARGSGRAPKGFHLCEILARC 416 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT---TPVFKIDGVLNA 485 + LV+ GGHA AAGLT E L + ID ++ Sbjct: 417 --DSHLVRFGGHAGAAGLTAEAGRVEALREALSAAVAEASADGDEGGAGRGSLIDAEVDL 474 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQA 543 V+ +L L P+G GN P+ ++++ R V HL++ FE + L Sbjct: 475 GQVDESLCRELGQLSPFGQGNEKPLLGCRGMRVRTTRRVGGDGSHLKLEFEDRQGRALSG 534 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAF G G + T +N WRG R +L + + Sbjct: 535 IAFGWGERDPG------AGATIDATFVPSINVWRGESRVELEIQHLA 575 >gi|187734566|ref|YP_001876678.1| single-stranded-DNA-specific exonuclease RecJ [Akkermansia muciniphila ATCC BAA-835] gi|187424618|gb|ACD03897.1| single-stranded-DNA-specific exonuclease RecJ [Akkermansia muciniphila ATCC BAA-835] Length = 579 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 172/555 (30%), Positives = 269/555 (48%), Gaps = 30/555 (5%) Query: 49 NRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107 R + + FL+P + L DP ++ + A RI +A+ E + I+GDYDVDG Sbjct: 37 QRGFTGGMETELFLDPRLSHL-SDPFLMGEMRAAVDRIFRAVDEGETVCIYGDYDVDGVT 95 Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF---INEGAQLIITVDCGSTSYD 164 SVAL+ L ++ +IP R +GYG + + +++ + L+ITVDCG++S Sbjct: 96 SVALLRAILMAYDLDPQYFIPVRSREGYGLSEAGIKRCLCECADPPSLLITVDCGTSSVK 155 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 + + GIDVI++DHH+ P A V ++++ S +LC+AGVVF + + + Sbjct: 156 EVDMLNSLGIDVIILDHHEAGPLGRPDAAAVVNAKIEENSPYTYLCSAGVVFKLAHALLK 215 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 + FDL LDLVA+ATV D+VPL+ NR V GL + GLK L E Sbjct: 216 ERKLK-----TFDLKLYLDLVAVATVADIVPLVAENRILVRHGLGRLAHSRHTGLKTLTE 270 Query: 285 R--------VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 VN + + A ++G+ IGP INA GR+ LL++ D++ LA L Sbjct: 271 IAGIRPSDSVNHAGFLNAAHVGFRIGPRINAAGRMDSPMDALELLLTMDARRAVQLAQML 330 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 D N+ R+ E A+ A + D ++ +VIV+ WHPG+VG++A++L ++ + Sbjct: 331 DSHNRKRQEEEEAIRTDAVEMLH-NSFDPERDNVIVLGSRAWHPGVVGIVASQLMRRYHK 389 Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456 P+F I+F+E G G GSGRSI G + + + LV GGGH MAAGL +E Sbjct: 390 PTFVIAFDESGVGKGSGRSIPGVSLVQAIHHC--ADTLVSGGGHDMAAGLVIEESRMDDF 447 Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516 F ++ +PV ID ++ A+ + L+D E P+G NP P+F + Sbjct: 448 RRAFNRYVSETTTEEQRSPVLNIDMEVSFQALTLDLLDSYEKLEPFGNSNPQPLFMSSDV 507 Query: 517 KLQS-IRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 + V HL++ F Q AI F L + + N Sbjct: 508 FPTEPPKRVGTNHLKL-FMRQGIVERDAIFFNGAERELP-------NPPWDIAFTIDRNV 559 Query: 576 WRGSKRCQLRVLDAS 590 +RG + + + Sbjct: 560 YRGRASLSISIQEIR 574 >gi|329737373|gb|EGG73627.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis VCU028] Length = 757 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 152/591 (25%), Positives = 274/591 (46%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W Q + + + + + IV +VL ++N+ ++ + + D Sbjct: 4 SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + + G+DVIV DHH++ A+ Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +G+ + +KA++ + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRYIVKQGVKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD+ +E E LA +++ N R+ + S + +A Q Q ++ Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITNEALLLAEEQIK--QGHLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ +E GS RSIE + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L + + P K+D L +NI Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I + P+G +P+F + ++S + + HL++T L A+ + Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ +H+ G L +N W G++ Q + D + + + Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568 >gi|260663647|ref|ZP_05864536.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum 28-3-CHN] gi|260551873|gb|EEX24988.1| single-strand DNA-specific exonuclease [Lactobacillus fermentum 28-3-CHN] Length = 765 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 170/582 (29%), Positives = 266/582 (45%), Gaps = 32/582 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + +P +A +LVN+ + S D A+ +LNP L P Sbjct: 4 SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D+A RI+ A+ EKI ++GDYD DG + LM L + Y+PDR Sbjct: 62 DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ ++ I G QLI+TVD G A++YA QG+DV++ DHH + + PA Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P L GV F V + + +LDLVA+ + D Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311 +V L G N A V GL R+ PGL AL++ + +T ++G+ + P +NA GRI Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ G LL + D +E E LA ++D N+ R+ + + ++A A Q Q + Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G WH G++G++AA + + G+P+ S E + GSGRS++G D+ + Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDL--FAALDQH 403 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGHAMA G++ E L + P KI L + Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTVQGFNQQQKPPLKITLTLAPDRLTQ 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L ++ P+G GN P + +V+ HL++ L +AF Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV---GQPPLDVVAFG- 519 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + G L +N WRG CQL + D + Sbjct: 520 ---KASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVA 558 >gi|42519347|ref|NP_965277.1| hypothetical protein LJ1475 [Lactobacillus johnsonii NCC 533] gi|41583635|gb|AAS09243.1| hypothetical protein LJ_1475 [Lactobacillus johnsonii NCC 533] Length = 756 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 160/577 (27%), Positives = 282/577 (48%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQRQANNLD---EELIKDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ A++ V+ Sbjct: 119 PNMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI++ ++ ITA ++G+ I P +NA GR+ +++ Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGEITATDVGFNIAPRLNAVGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A +++ LN R+ + S + + A+V Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEKIAARIEELNNERKELTSKVYDDCLAQVEKNGW--QHRNTLVIYN 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E G+ GSGRS EGF++ + +++ +L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDETGELKGSGRSSEGFNLFNALEP-MKDDLLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ + + + V D LN V I Sbjct: 405 KFGGHDFACGLSLKADKL----EELRVRFEDSFKPSTDLEVKDFDFELNLKEVTPDTIAE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP P+F+ ++S+ + H++ T E + L + F L Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNAGK-LTIVGFN--KGFL 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L+ + + L +N W+ Q + Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551 >gi|242242908|ref|ZP_04797353.1| recombination protein RecJ [Staphylococcus epidermidis W23144] gi|242233623|gb|EES35935.1| recombination protein RecJ [Staphylococcus epidermidis W23144] Length = 757 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 154/591 (26%), Positives = 278/591 (47%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W Q + + + + + IV +VL ++N+ ++ + + D Sbjct: 4 SKYNWDI--TQPDTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFKDT--NISHDY 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRILGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + + G+DVIV DHH++ A+ Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIKHPPQ-----------HFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +GL + +KA++ + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRYIVKQGLKILNSHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD+ +E E LA +++ NQ R+ + S + ++A Q Q ++ Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNQERKDIVSKITDEALILAEEQIK--QGHLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ + GS RSIE + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDKNQNHAKGSARSIEQVSM--FDILNDHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N RL + + P K+D L + +NI Sbjct: 405 QLIDKFGGHHMAAGMTMPIDNIERLHKELNVWMKELTVTTSLEPSIKVDAQLEETEINIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I + P+G +P+F + ++S + + HL++T L A+ + Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ +H+ G L +N W G++ Q + D + + + Sbjct: 522 HL----ASELEAGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568 >gi|190574177|ref|YP_001972022.1| putative single-stranded-DNA-specific exonuclease [Stenotrophomonas maltophilia K279a] gi|190012099|emb|CAQ45721.1| putative single-stranded-DNA-specific exonuclease [Stenotrophomonas maltophilia K279a] Length = 587 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 174/564 (30%), Positives = 279/564 (49%), Gaps = 24/564 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++AR+ +R P + L P +LT D A +++AI N ++I++ GD Sbjct: 36 PLLARLYASRGAGTPELAL---PKLGSLHA-PELLTGIDDAVGLLIEAIANDKRILVVGD 91 Query: 101 YDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + +P+R+V GYG +PSL+E+ L++TVD G Sbjct: 92 FDCDGATACAVGVRGLRMLGAQHVFHAVPNRMVHGYGLSPSLVEELAALQPDLLVTVDHG 151 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH + PA +V+PN D L GV+F VL Sbjct: 152 IACHAGVIAAKARGWQVLVTDHHLPGPQLPPADVIVDPNLDGDAFPSKSLAGVGVIFYVL 211 Query: 220 VLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + R +R+ DL +LLDLVA+ TV D+V L NRA V GL R QG Sbjct: 212 MALRRHMREAGVFADGKGPDLTTLLDLVAVGTVADLVALDPNNRALVSAGLRRLRAGQGC 271 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALIE + +TA ++G+ +GP +NA GR+ + LG LL+++D ++ +A Sbjct: 272 VGLRALIEASGRDAARLTATDIGFALGPRLNAAGRLEDMALGIALLLTEDPRQAREIAQT 331 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ +M + AE + D+ Q+ + WHPG+VGL+A+++K++ Sbjct: 332 LEQINSERRAVQQSMTDDAEQALTRVVLDMAGQRPVAACLFDADWHPGVVGLVASKMKDR 391 Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A + E G GS RSI G I ++ A G++ + GGHAMAAGL++ Sbjct: 392 LHRPVIAFAPAEPGADTLRGSARSIPGLHIRDALALVDARHPGLIERFGGHAMAAGLSMR 451 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F ++ DG L A ++ D L AGP+G G P P Sbjct: 452 LDHVDDFKAAFVAVVLEMLDPAALQQQVLSDGELAADELDHRHADALRLAGPWGQGFPEP 511 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F + ++ + RV+ HL++ T+ AI F + + G+ +H+ Sbjct: 512 LFDG-HFEVANWRVLKERHLKLELRLPGVPGTINAIHFGGWHG-------NAPGRHVHLA 563 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL + P Sbjct: 564 YRLACDDYRGGSAIQLIIEHCLPA 587 >gi|219848785|ref|YP_002463218.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus aggregans DSM 9485] gi|219543044|gb|ACL24782.1| single-stranded-DNA-specific exonuclease RecJ [Chloroflexus aggregans DSM 9485] Length = 570 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 163/582 (28%), Positives = 262/582 (45%), Gaps = 22/582 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S RW A I Q + ++A +L R + + A FL + Sbjct: 2 SARRQRWEVRPPAP----ATFIAQ-LNLHPVLATLLYQRGLHEPEAAHAFLAADYTSGLH 56 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DPL + +AA RI AI E++ ++GD+DVDG +VAL+ + + YIP R Sbjct: 57 DPLRMRGMAEAAARIATAIDRGERMAVYGDFDVDGVTAVALLTQAIRAMGGKIRPYIPHR 116 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +GYG N + + +G +L+ITVDCG ++ + A G+DVIV DHH E Sbjct: 117 AREGYGLNNVAIGQLAADGVRLLITVDCGISNVAEVVEAKRLGMDVIVTDHHHPPDELPS 176 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP + D L G+ F ++ + R K P + LLDLVAL T+ Sbjct: 177 ADAVINPKQPDCAYPFKGLVGVGIAFKLVQALARY----GKRPAHLRGRDLLDLVALGTI 232 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGG 309 D+ PL+ NR V GL+ PG+++LI ++ + + + + + P +NA G Sbjct: 233 ADMGPLVDENRVLVRAGLLALNETNRPGVRSLITVAGLTPGAVDSGGVTFSLAPRLNAAG 292 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ LL++DD + +A L N+ R+ M + AE + + Sbjct: 293 RLDDARRAYELLLADDQATADAIAADLHATNRERQSMTRQLQTIAEELINASGRA--EHP 350 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +IV+ ++ G++GL+AARL E++ RP I + GS RSI GF+I +++ Sbjct: 351 LIVLTNPNFNAGLLGLVAARLVERYHRPVVVIE-QGSETSRGSARSIPGFNIIELLDQC- 408 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + V+ GGH AAG T+ N L + + TP ID L ++ Sbjct: 409 -ADLFVRYGGHTAAAGFTIHTANIPVLEQRLLALGKQYLKEELLTPRLLIDAKLPLDELS 467 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDSETLQAIAFRV 548 + ++ P+G NP P+F PN + HL+M + + +AI F Sbjct: 468 WDVYYAIQQLEPFGHCNPTPMFMAPNVTVIDPQTTTTGDHLRMRVRA-GTNVYEAIGFNF 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + + L V+ W G +R +L V D Sbjct: 527 GHF----AAALQRHPTVDLAYQLAVDEWNGQRRMRLLVRDFR 564 >gi|329724685|gb|EGG61191.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis VCU144] Length = 757 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 151/591 (25%), Positives = 274/591 (46%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W Q + + + + + IV +VL ++N+ ++ + + D Sbjct: 4 SKYNWDI--TQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGT--NISHDY 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 MLLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + + G+DVIV DHH++ A+ Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQ-----------HFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +G+ + +KA++ + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRYIVKQGVKILNNHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD+ +E E LA +++ N R+ + S + +A Q Q ++ Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITNEALLLAEEQIK--QGHLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ +E GS RSIE + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L + + P K+D + +NI Sbjct: 405 QLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQIEEKEINIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I + P+G +P+F + ++S + + HL++T L A+ + Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ +H+ G L +N W G++ Q + D + + + Sbjct: 522 HL----ASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568 >gi|257453462|ref|ZP_05618757.1| single-stranded-DNA-specific exonuclease RecJ [Enhydrobacter aerosaccus SK60] gi|257449214|gb|EEV24162.1| single-stranded-DNA-specific exonuclease RecJ [Enhydrobacter aerosaccus SK60] Length = 592 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 181/587 (30%), Positives = 272/587 (46%), Gaps = 32/587 (5%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 E + Q +AR+L R V L+ S ++P LT KA Sbjct: 12 KIDEIPRDLQPLAQT---SMTLARILAGRGVRDA---ANLDTSFNKMLPA-NSLTGITKA 64 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 + +AI +KI+I GD+D DGA S ALM+R L +PDR GYG P + Sbjct: 65 VALLDKAIDTQQKILIVGDFDCDGATSTALMVRVLREMGAQVEFLVPDRFKYGYGLTPEI 124 Query: 142 MEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 + I +I+TVD G +S+ ++ A +G+ VI+ DHH A A+VNPN+L Sbjct: 125 VALGIETYDPDVIVTVDNGISSHAGVELAKAKGLTVIITDHHLTTQATPNADAVVNPNQL 184 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 L GV F VL + ++ RQ N + +DLVAL TV DV L N Sbjct: 185 GCDFASKSLVGVGVAFYVLGNLAKVRRQAN--KSTTQVSRYIDLVALGTVADVGVLDQNN 242 Query: 261 RAYVVKGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGS 318 R V +G+ ++ L + ++ ITA++ G+++GP INA GR+ +G Sbjct: 243 RILVHQGIQAIKQGRCCVGILALLEQASRQATDITAQDFGFILGPRINAAGRMDSMRIGI 302 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV----- 373 L++DD E + LA +LD LNQ RR +E M +QA++ + T + +Q +V V Sbjct: 303 DCLLTDDWGEAQRLAHQLDKLNQERRQVEQGMRQQADSVLTTLENPSEQNAVNQVTQRKR 362 Query: 374 ----EGDRWHPGIVGLLAARLKEKFGRPSFAISF------EEDGKGIGSGRSIEGFDIGK 423 D WH G++G++A RLKE + P+ + E+D GS RSIEG I Sbjct: 363 SIILYQDEWHQGVIGIVAGRLKESYHVPAIVFAPADTSLIEDDNPIKGSARSIEGIHIRD 422 Query: 424 MVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + ++ GGHAMAAGLT++R NF C F + V + DG Sbjct: 423 AIESVAQTYPELISHFGGHAMAAGLTIKRKNFEPFCKAFDEVIAA-VADEVFAETLYSDG 481 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-T 540 L A + +D L++ +G G P+F +Q RV+ HL++ D T Sbjct: 482 ELTAGEFTVDFVDSLQTLAIWGHGFVPPIFDGMFV-VQDYRVLKERHLKLWLSYPDVPFT 540 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 ++AI F + + ++H+ L N + G + QLRV Sbjct: 541 IEAIWFNADFDAIALSAINRSLSKVHLLYELEKNLFNGQTKLQLRVK 587 >gi|94501160|ref|ZP_01307683.1| single-stranded-DNA-specific exonuclease RecJ [Oceanobacter sp. RED65] gi|94426736|gb|EAT11721.1| single-stranded-DNA-specific exonuclease RecJ [Oceanobacter sp. RED65] Length = 581 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 287/582 (49%), Gaps = 31/582 (5%) Query: 33 ITQKHAIP--DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 IT++ + P I+ RVL +R + L+ S+ L L D+A + AI Sbjct: 5 ITRRFSNPELPIIERVLDSRGLKTGD----LSFSLNQLAGY-QALKGIDQAVAMLEFAIR 59 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME-KFINE 148 + ++I+I GD+D DGA S AL + L + + +P+R GYG + ++ + + Sbjct: 60 SQQRIVIIGDFDADGATSTALAVDALQQLGAHWVHYLVPNRFEFGYGLSSAIAQLAYEQY 119 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 L++TVD G +S++ ++ A G+ V+V DHH A A+VNPN+ D L Sbjct: 120 QPDLLVTVDNGISSFEGVETAHELGMKVLVTDHHLAADSLPNADAIVNPNQPDCLFPSKA 179 Query: 209 LCAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 C VVF V+ + + ++ N ++ LDLVALATV DVVPL N+ V +G Sbjct: 180 ACGCAVVFYVMCALRAHRMNLGDETAKNLNMAQYLDLVALATVADVVPLDRNNQILVEQG 239 Query: 268 LMVARR-QGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDD 325 L R Q PG++AL++ +P+ + G+ +GP +NA GR+ + ++G L+S + Sbjct: 240 LRRIRAGQARPGVQALLQVAKRQAPLLTSKDFGFALGPRLNAAGRMDDMSIGIECLLSKE 299 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ-CDDIQQASVIVVEGDRWHPGIVG 384 +A LD LNQ+R+ +E M ++A + T + Q+ + + +WH G+VG Sbjct: 300 FTRAVHIAETLDELNQDRKSVEGQMQKEALKILETTSLSNEQEQATYCLYHPQWHQGVVG 359 Query: 385 LLAARLKEKFGRPSFAISFEEDG-----------KGIGSGRSIEGFDIGKMVSFA--VEE 431 LLA+R+KEK RP A + D + GSGRSI GF + + Sbjct: 360 LLASRIKEKLFRPVIAFAPASDDVTNEALASGEFEIKGSGRSIPGFHMRDALDLVAKRLP 419 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L K GGHAMAAGL++++ + F++ A +I+ A + DG N N+ Sbjct: 420 HVLQKFGGHAMAAGLSIQQKHLKEFETCFEQVARDIMTADMLVNEIITDGEPNYEDYNVH 479 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFRV 548 + L+ P+G P P+F + + R++ HL++T S++ L AI F + Sbjct: 480 IARQLKFVAPWGQNFPEPIFDGE-FDVINYRLIGSEKNHLKLTLASKNHHRYLDAILFSI 538 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + R+H+ L VN +RG + QL + Sbjct: 539 ERHGLSAQDVSNL-SRVHIVFDLDVNEFRGQENVQLMIRHLR 579 >gi|218133212|ref|ZP_03462016.1| hypothetical protein BACPEC_01074 [Bacteroides pectinophilus ATCC 43243] gi|217992085|gb|EEC58089.1| hypothetical protein BACPEC_01074 [Bacteroides pectinophilus ATCC 43243] Length = 577 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 173/590 (29%), Positives = 283/590 (47%), Gaps = 34/590 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILT 76 W + AI + I ++AR++ NR+V+ D +++L + M DP+++ Sbjct: 4 WKVYAKKADF---KAIGARFGINQVIARIIRNRDVTEDSQYEEYLYGGLES-MHDPVLMK 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +A I AI + ++I I GDYD+DG S+ ++ + L +A+ +PDRI DGYG Sbjct: 60 GISEAVAVIKNAIADGKRIRIIGDYDIDGVCSICILHKGLIMAGADADYVVPDRITDGYG 119 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE--------- 187 N +L+ I +G +IIT D G +YDA+ YA GI +IV DHH V Sbjct: 120 INENLIRNAIADGIDMIITCDNGIAAYDAIAYAKENGITIIVTDHHDVPFRENADGTREY 179 Query: 188 -EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA +V+P + D LC A V + ++ + +D++ L+ LL+L A Sbjct: 180 IIPPADVVVDPKQSDCGYPFKELCGALVAWKMIQHLLGQKPKDSEF-----LMYLLELGA 234 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNI-SSPITAENLGYMIGPS 304 +ATV D+V L G NR V +GL N GLK L++ + + A ++G+++GP Sbjct: 235 IATVGDIVSLQGENRTIVKQGLRHIHAGTRNVGLKTLMDVCGVAEADFNAYHIGFVVGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GR+ + RLL +DD ++ + LA +L +LN R+ M +E A V + + Sbjct: 295 LNASGRLDSAVKAIRLLETDDEKQAQALAAELKLLNDERKDMTERGVENACNTVEREYGN 354 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE--EDGKGIGSGRSIEGFDIG 422 +IVV D H + G++A R++EK+ RP + E G GSGRSIE +D+ Sbjct: 355 -NIPQIIVVHLDNCHESVAGIIAGRVREKYYRPCIIFTDSIGEHGIYKGSGRSIEPYDM- 412 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +L K GGH MAAG+++ F + + TPV ID Sbjct: 413 -FAGVNRFRDMLEKFGGHHMAAGMSIRSERFEEFRECLVNSMD--MSDEELTPVTWIDVP 469 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSET 540 + V + + L+ P+G NP PVFA N + ++ L+M ++ + Sbjct: 470 MPLDYVTEEVTEQLQLLEPFGKDNPKPVFADKNLTVVRKNIIGKNRNVLKMILQTVNGRR 529 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L+A+ F V E G + + + +N + G+ Q+ + + Sbjct: 530 LEAVKFHVTQE---EADNMKTGDIISIVYYPDINTFNGNSTLQMIISEIK 576 >gi|241890134|ref|ZP_04777432.1| single-stranded-DNA-specific exonuclease RecJ [Gemella haemolysans ATCC 10379] gi|241863756|gb|EER68140.1| single-stranded-DNA-specific exonuclease RecJ [Gemella haemolysans ATCC 10379] Length = 753 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 157/581 (27%), Positives = 275/581 (47%), Gaps = 29/581 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + W+ E + L + ++I +A++L RN++ K + + DP + Sbjct: 5 YNWIYPNYDENFIKEL---ESYSISKNIAKILNARNITDMTSVKKYFSDEYEEGY-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI +AI N EKI+++GDYD DG S L++ L N + YIP+R +G Sbjct: 61 MHDMQKAVDRINEAIENEEKILVYGDYDADGITSTVLLVETLISMGANVSSYIPNRFEEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN K I+ G LIITVD G + + A G DVIV DHH+++ AYA+ Sbjct: 121 YGPNKEAFTKIIDSGITLIITVDNGIAGVEEVDLANELGCDVIVTDHHKIQDTIPNAYAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + L GV F + + I LLDLVA+ T+ D+V Sbjct: 181 IHPEHPEGNYPFKKLAGVGVAFKLAHALLEIFPD-----------FLLDLVAIGTIADMV 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 + NR +V +GL + GLK L+E I + I + +G+ I P +N+ GR+ + Sbjct: 230 SITDENRIFVKQGLELINEDPRIGLKMLLELSGIDTKIDEQTVGFYIAPKLNSIGRMDSA 289 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LG L++++ LA +++ N R+ + +++ +K+ + + +Q +VI+V Sbjct: 290 KLGLTFLMAEEPVTARALAEQIEQYNIQRKQVTEDIVKDVISKI--ENSEKKQKNVIMVS 347 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ +H G++G++A+ + EK+ +P F ++ +E G GS RSI F+I ++ + Sbjct: 348 GE-YHEGVLGIVASNIVEKYQKPVFIMNEKE-GVLKGSARSIFDFNIYVAMNK--ISDLF 403 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG + E+ NF ++ +F ID V + ++ ++ Sbjct: 404 LAFGGHTLAAGFSFEKSNFEKIEEFLDNEFEEFKQNNNLKANKNIDIVTSLEDISYQFLN 463 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 L++ PYG P N + + +L++T + L I F+ T Sbjct: 464 SLDALKPYGMDFEKPTVLIENAMVLNKAYFGSEKQYLRLTIADEVGN-LDCITFKDSVT- 521 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F + + + ++ N + G + Q ++D E Sbjct: 522 ---FDKVEKNDIIDLVCNIDKNNFNGRTKLQAHIIDIHIKE 559 >gi|268319277|ref|YP_003292933.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus johnsonii FI9785] gi|262397652|emb|CAX66666.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus johnsonii FI9785] Length = 756 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 162/577 (28%), Positives = 278/577 (48%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQRQANNLDQ---ELIEDYGLTDIQAKLFALRGINTAEKIDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K RI QAI N EKI I+GDYD DG + ++MM L + +IPDR DGYG Sbjct: 59 DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVYFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ + ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ A++ V+ Sbjct: 119 PSMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI++ I ITA ++G+ I P +NA GR+ ++ Sbjct: 228 TGEGHIVVKRGLDILNQTERPGLRALIKQAGLIMGQITATDVGFNIAPRLNAVGRLSNAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A K++ LN R+ + S + E A+V Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEKIATKIEELNNERKELTSKVYEDCLAQVEKNGW--QHRNTLVIYN 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E G+ GSGRS EGF++ + ++E +L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDEAGELKGSGRSSEGFNLFNALEP-MKEDLLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+ + + + + V D LN + I Sbjct: 405 KFGGHDFACGLSFKADKL----EELRVRFEDSFKPSTDLEVKDFDFELNLKEITPDTIAE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP P+F+ ++S+ + H++ T E + L + F L Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNTGK-LTIVGFN--KGFL 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L+ + + L +N W+ Q + Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551 >gi|317970121|ref|ZP_07971511.1| single-stranded DNA-specific exonuclease [Synechococcus sp. CB0205] Length = 646 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 169/583 (28%), Positives = 271/583 (46%), Gaps = 25/583 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP-L 73 W + Q + + + +L R S + LNP+ PDP Sbjct: 17 QNWQL-PAAVALEELPGDVQALGLSEPILALLSRRGFGSAAAIEALLNPADA---PDPKH 72 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D A +R+ QA +E++ I GDYD DG S AL++ L IP R D Sbjct: 73 HFPDLGLAVKRLKQACKTNERLAICGDYDADGMTSTALLIGVLQQLGAQPQAAIPSRQAD 132 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N S++E+ EG +L++TVD G ++ +AL+ A G++VIV DHH + E P A Sbjct: 133 GYGLNVSMVEELAAEGIRLLVTVDNGVSAREALERAQALGLEVIVTDHHTIPEERPPLSA 192 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 L++P + S L G+ +++ + + R L LDL + T+ D+ Sbjct: 193 LLHPQCTPEDSPYRGLAGVGMAYVLAGALAKANR------SAKALAMALDLFCIGTIADM 246 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 PL G+NR +++ GL + PGL+AL + PI A +G+ + P INA GR+G Sbjct: 247 APLQGVNRRWLMDGLPRLKDSPLPGLQALQQVAGLDDVPIDAGAVGFQLAPRINAVGRLG 306 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + L LL +DD ++ LA + + N+ RR + A+ +A A Q++ ++ Sbjct: 307 DPRLVVDLLTTDDPEQALELARECESWNRQRRELCDAIEAEARALAEADG--DQRSPFLL 364 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++AARL E +G P ++ E DG+ S R+ +GF + + E Sbjct: 365 LAQSHWHHGVIGIVAARLVEHYGTPVALLAAEGDGRMRASVRAPKGFAVDAALQACGE-- 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH A G TV+ L + A + + +L +N L Sbjct: 423 LLERFGGHPAAGGFTVKAERVTALHERLNDLAQVWREREGLQ-LVMPEALLKLEQINRPL 481 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 L+ P+G GNP P+F + R + HLQ++ Q ++A+A+R Sbjct: 482 WRELQRLEPFGIGNPTPLFWSCGCTISQQRELRGGHLQLSLR-QGEARVRAMAWRWG--A 538 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 +G L K++ V HL +N W G + QL V+ P G Sbjct: 539 VGHLL----PKQVDVAYHLRLNRWNGEESLQLEVVGIRPSSGE 577 >gi|187778663|ref|ZP_02995136.1| hypothetical protein CLOSPO_02258 [Clostridium sporogenes ATCC 15579] gi|187772288|gb|EDU36090.1| hypothetical protein CLOSPO_02258 [Clostridium sporogenes ATCC 15579] Length = 588 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 175/590 (29%), Positives = 289/590 (48%), Gaps = 42/590 (7%) Query: 30 ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 I K I + + +LVNR + +++ + FLNPS++ L +PL++ D DK I +A Sbjct: 9 IKDIAHKSGISETLCTILVNREIYNLEDIESFLNPSLKKLY-NPLLMKDMDKGTEIIKKA 67 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I + +KI I+GDYD DG S ++ L C N YIPDR +GYG +EK E Sbjct: 68 IIDKKKIAIYGDYDADGVTSTVILYTALKECEANVTYYIPDRETEGYGMCTDRVEKLKEE 127 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE----------IPAYALVNPN 198 G ++IIT D G + + ++ A G+ V++ DHH++ E A ++NP Sbjct: 128 GVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENENGEREYVVPKADVIINPK 187 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG 258 + D LC AG+ F L+Y L + LL+ A+ T+CDVV L Sbjct: 188 QKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKY-----KELLEFAAIGTICDVVDLKD 242 Query: 259 LNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLG 317 NR GL N GL+ALI+ +++ IT+ N+G++IGP INA GR+ + L Sbjct: 243 ENRIIAKLGLKNINNTNNLGLRALIKETSLNGKNITSYNVGFIIGPCINATGRLDTAALS 302 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 L ++ D + E LA +L LN R+ + +E+ + + ++ V+V+ + Sbjct: 303 VELFLTKDIKRAEELAKELRNLNTERQEITMEGVEEITYTI--ENSSLKNDKVLVIYKED 360 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 H I G+++ R+K+ + RP+ ++ + GSGRSI+G+++ + + K Sbjct: 361 IHESIAGIVSGRIKDAYNRPTIVLT-KGKEMPKGSGRSIDGYNL--FEELMKCKEYIYKF 417 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGH MAAGLT+E N ++ + K + + P +ID L VN+ LID L+ Sbjct: 418 GGHPMAAGLTIEEKNIDKIREELNKNCN--LKDEDFIPKIRIDKRLPLKEVNLELIDSLQ 475 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SETLQAIAFRVYGTPLG 554 P+G GN +P+ A N K++ IR++ L++T +D + + AIAF Sbjct: 476 CLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRIEDTNRRIDAIAFGKVDEFKR 535 Query: 555 EFLMQS--------------RGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G ++ + + +N + G+ QLR++D Sbjct: 536 DLENIYGDESIENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLRIIDYR 585 >gi|326561345|gb|EGE11703.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis 7169] gi|326566197|gb|EGE16350.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis 12P80B1] gi|326570774|gb|EGE20799.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis BC1] gi|326573037|gb|EGE23013.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis CO72] Length = 589 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 266/578 (46%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL TV D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + R+ L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA KL+ LNQ RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|154482683|ref|ZP_02025131.1| hypothetical protein EUBVEN_00359 [Eubacterium ventriosum ATCC 27560] gi|149736459|gb|EDM52345.1| hypothetical protein EUBVEN_00359 [Eubacterium ventriosum ATCC 27560] Length = 584 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 167/597 (27%), Positives = 282/597 (47%), Gaps = 45/597 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 RW + N I++K I I+AR+L NRN + + K +L+P I L P + Sbjct: 4 RWYLQTKKADFN---EISRKFNISPILARLLRNRNVIGDENIKKYLSPDIERL-SSPWMF 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + I +I + DYDVDG S ++ R L ++ +P RI DGY Sbjct: 60 KDMDKAVDILKIKIAAGNRIRVICDYDVDGVCSGYILYRSLKKLGAVVDVVVPHRIEDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-------- 187 G N +L++K ++G I+T D G +YD ++YA + G+ +IV DHH+V Sbjct: 120 GINENLIKKAFDQGIDTILTCDNGIAAYDQVEYAKSLGMTIIVTDHHEVPYTETEQGREY 179 Query: 188 -EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A++N + D LC A V F ++ + + D+ LL A Sbjct: 180 IIPKADAVINHKQKDCGYPFKELCGAMVAFQLISALTESYGISKR-----DVYRLLPYAA 234 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 LAT+CDVV L G NR V GL + + + GL ALI+ I + I + ++G+++GP I Sbjct: 235 LATICDVVELQGENRMVVQYGLKMIKNCKDVGLNALIDACKIDKNNIDSYHIGFVLGPCI 294 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + ++ ++LA L LN R+ M ++A + Sbjct: 295 NASGRLDTAKKAMELLSETNREKADILATSLKELNDERKAMTEEGTKKAI-----EIAKD 349 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +V+V+ H I G++A R++E+ +P ++ + GSGRSIE +D+ Sbjct: 350 YDDNVLVIYLKDCHESIAGIIAGRVRERCNKPVIVLT-DAKDCVKGSGRSIEEYDMY--E 406 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + +K GGH MAAG+++ + N L + ++ + ID L Sbjct: 407 ELCKVKDLFLKFGGHKMAAGVSLPKENIELLRKRLNE--NSTLTEDDLCLKVWIDMQLPI 464 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 +++ L++ L++ P+G GN P+FA N K++ ++++ L++T E+ + + A Sbjct: 465 EYISMNLVEELKTLAPFGKGNEKPIFADKNLKIKKLQILGKAGNVLKLTIENSTNYRMTA 524 Query: 544 IAFRVYGTPLG-------------EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 I F +G L Q+ T + +N +RG+ Q+ + Sbjct: 525 IMFDRTQEFMGFIKEKFGQEEINKALLGQNNAITFMATFYPTINEFRGNIDLQIVID 581 >gi|238020450|ref|ZP_04600876.1| hypothetical protein GCWU000324_00332 [Kingella oralis ATCC 51147] gi|237867430|gb|EEP68436.1| hypothetical protein GCWU000324_00332 [Kingella oralis ATCC 51147] Length = 570 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 182/583 (31%), Positives = 271/583 (46%), Gaps = 33/583 (5%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 + AL Q ++A++ RNV+ LN S++ L+P LT+C Sbjct: 10 RPINPQLQSAL---QAAGANPLIAQLYAARNVADS---SELNDSLKQLIPY-TQLTNCTA 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 AA R+ AI +KI+I DYD DGA + ++ M+ L+ + ++P+R GYG P Sbjct: 63 AASRLADAIQAQQKILIIADYDADGATACSVAMKGLASMGAAVDFFVPNRFEHGYGLTPE 122 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 L + +GA LI+TVD G +S + + A G+DVIV DHH IP +VNPN+ Sbjct: 123 LADIAHAKGADLIVTVDNGISSAEGVARAKALGLDVIVTDHHIAG-SVIPDCIIVNPNQR 181 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-----FDLLSLLDLVALATVCDVVP 255 + GV+F VL+ + LR + L LLDLVAL TV DVVP Sbjct: 182 GCTFPSKSIAGVGVIFYVLIALRAELRARDYFSGCRAIAEPKLDELLDLVALGTVADVVP 241 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + + GY I P INA GR+ + Sbjct: 242 LDHNNRILVSQGLKRIRAGKMSHGIRALFQTARCSAQKAQPFDFGYKIAPRINAAGRLDD 301 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++G L+S E E +A +L+ LNQ R+ +E ML A + Q + V Sbjct: 302 MSIGIACLLSGSLNEAESMASELNELNQTRQEIEQEMLTDILADCPSALPSEQT--TLCV 359 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEE 431 D +H G+VG++A+RLKEKF RP F + ++DG GSGRSI G + ++ Sbjct: 360 YRDSFHQGVVGIVASRLKEKFYRPVFVFAPDDDGNYRGSGRSIAGVHLRDVLDAISKHAP 419 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 I++K GGHAMAAGLT+ + D F+ + V + F DG L AS + +A Sbjct: 420 EIIIKFGGHAMAAGLTLRSGSLKTFGDLFEDIVRSQVNEDTLSQTFLTDGSLKASDITLA 479 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 ++ A +G G P P FA ++ + + H + +++ + +A+ +R Sbjct: 480 NAQLIN-AQIWGQGFPPPSFADT-FQVLRQQSMGADKKHTKAWL-TKEGQEFEAMFWRCE 536 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 T + + V VN WRG+ QL V Sbjct: 537 DT---------LPRDIRVVYRPTVNEWRGNTELQLYVDYWEAA 570 >gi|225872650|ref|YP_002754107.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium capsulatum ATCC 51196] gi|225794055|gb|ACO34145.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium capsulatum ATCC 51196] Length = 592 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 172/593 (29%), Positives = 279/593 (47%), Gaps = 26/593 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S RW+ + ALA + P ++A +L R S + A+ FL PS+ L+ DP Sbjct: 15 SSRRWLLDAVDPAVAAALAREARL--PLLIAELLAARGASSAEAARAFLAPSLDDLL-DP 71 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + +A RI QA E ++I+GDYDVDG + L+ + ++P R+ Sbjct: 72 YSMRGMAEAVARIEQAAARHETMLIYGDYDVDGTTATVLLKTAIERLGGTVRFHVPHRLR 131 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIP 190 +GYG ++E +G +L+I+VD G ++ A + A G+D+IV DHH + + Sbjct: 132 EGYGMQREILESAAADGVRLVISVDTGIRAFAAAEAAAELGLDLIVTDHHLPEDGTGIPR 191 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NPN+ +LC AGV F + + QD + L S L ++A+ATV Sbjct: 192 ALAVLNPNQPGCEYACKYLCGAGVAFKLSQALLEK--QDRTLARTKILPSFLKMLAIATV 249 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINA 307 D VPL+G NR V GL RR N GL+AL+ + ITA ++ + + P INA Sbjct: 250 ADAVPLLGENRTIVSIGLAELRRPVNAGLRALLTEAKLDPARKAITATDVAFRLAPRINA 309 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ ++ L + D Q LA KL+ LNQ+RR E+A+LE+ ++ + Sbjct: 310 AGRMDIASEVVELFTTRDPQRARDLAAKLEQLNQDRRATEAAILERILERLAE--PHFAE 367 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 A IV++G+ WH G++G+LA+R+ ++ G+P+ IS EDG+ GSGRSI G+ + + + Sbjct: 368 ARCIVMDGEGWHRGVLGILASRILDQTGKPALVIS-HEDGEAHGSGRSITGYHLLEALES 426 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + K GGHA A G ++ L + A + L Sbjct: 427 CH--DLFTKFGGHAHAVGFSMPSERVPELRARLVEHAAERITEQDLGGPLVCHAELALDH 484 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQ-DSETLQAIA 545 + A L P+G GN PVF +L +R + H++++ + A+ Sbjct: 485 ITAAAFSWLRRLEPFGMGNEEPVFVARKVRLAGPVRTMKEKHVRLSLSHGPRGVRISALG 544 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVN---YWRGSKRCQLRVLDASPVEGH 595 + L +++ L N + G +L ++D P + Sbjct: 545 WHWAERVA--ALGIQEDDLLNIAYRLRENEHPEYGG---LELEIVDLQPADSE 592 >gi|326564253|gb|EGE14487.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis 46P47B1] Length = 589 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 265/578 (45%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL TV D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + R+ L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA KL+ LNQ RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIKKADFERFNQALQAVLLG-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|315658094|ref|ZP_07910966.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus lugdunensis M23590] gi|315496423|gb|EFU84746.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus lugdunensis M23590] Length = 758 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 159/591 (26%), Positives = 288/591 (48%), Gaps = 29/591 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + I+ I +K+ + I+ +VL ++++ + + LN + +P Sbjct: 4 SKYTWNHNEPTQYID--EQIAKKYKLSPIIKKVLESKHIVNEKDIEGLLNGQ--QQLHEP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D KA RI AI E+I+I+GDYD DG S +M++ L YIP+R Sbjct: 60 WLLSDMTKAIERINLAIDKHERILIYGDYDADGVTSTTIMVKTLQSLGAEVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + ++ G+DVIV DHH++ S A+ Sbjct: 120 EGYGPNELAFKNAYDEGVSLIITVDNGIQGHREIEMIQELGVDVIVTDHHEMGSTLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + V + + N VP + L ++ T+ D Sbjct: 180 AIVHPMHPEFDYPCPNLCGAGVAYKVSQALLK-----NNVPPY-----YIALASIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V GL + + AL+ N + PI E +G++IGP +NA GR+ Sbjct: 230 LVSLTDENRTIVKTGLSILNDYQPIQIAALLNEANYNDPIDEETIGFIIGPRLNAVGRLE 289 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+++D++E LA +++ N R+ + S + E+A + + ++ Sbjct: 290 DASLAAELLMTEDAEEAAFLAEQVNHFNNERKDIVSKITEEALLLAKEEVA--KGRQFLL 347 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+R+ E +G P+ ++ +E GS RSIE + + + Sbjct: 348 LAKENWHEGVLGIVASRIVETYGLPTLILNIDDEQHYAKGSARSIEQVSM--FEILSDHQ 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L + + N+ +ID + + + Sbjct: 406 NLISKFGGHHMAAGMTMPIENISELREGLNTWMANLAETTSLDQKKQIDVKITEDEITVN 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I +E P+G P+F + + S++ + HL+MT + + TL + Sbjct: 466 NIYDIERLKPFGIDFNKPLFELDDVNVNSLKAIGKDKNHLKMTIGNSNLATL---YWNS- 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ + E + + +++ G L +N W G++ Q + D + + + Sbjct: 522 GSLVDELELN---QPINMIGQLQINEWNGNQSPQFIIQDIAINQQQILDYR 569 >gi|238923690|ref|YP_002937206.1| SsDNA exonuclease, RecJ [Eubacterium rectale ATCC 33656] gi|238875365|gb|ACR75072.1| SsDNA exonuclease, RecJ [Eubacterium rectale ATCC 33656] Length = 586 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 170/600 (28%), Positives = 282/600 (47%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +W + AI K I + AR++ NR + D +FLN + + DP +L Sbjct: 3 KWYVSAKRADFA---AIGAKFGIDQVTARIIRNRGVIGDDAVNEFLNGKLSD-IADPALL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + + Q I + KI I GDYD+DG S ++++ L + IPDR+ DGY Sbjct: 59 KDGQRLVDILAQKIADKVKIRIIGDYDIDGVMSTYILVKALKRAGACVDYMIPDRVKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L++K +G ++T D G + + + +A G+ V+V DHH V Sbjct: 119 GLNVHLIDKAYEDGIDTVVTCDNGIAAIEEIAHAKELGMTVLVTDHHAVPFEDIKGIKIY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 +E A A+VNP++++ LC A V + +++L+YR + D K + ++ VA Sbjct: 179 KESKADAVVNPHQIECSYPYKELCGAAVAWKIVILLYRKIGIDEKET-----MDFIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 ATV DV+PL G NR V GL N G+KAL+E NI + A + G+++GP + Sbjct: 234 FATVGDVMPLTGENRILVKAGLKSIHHTTNIGMKALLECCNIEAENVDAYHFGFVLGPCV 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L + D +E +A +L LN +R+ M + +E A + D+ Sbjct: 294 NATGRLDTAKRALELFLCDRQEEAMRIASELVALNDDRKEMTAKGVETAVEIY--ERDNY 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+V+ H I G++A R++EK+ +P+F ++ EDG GSGRSIE + + Sbjct: 352 EKDRVLVIYLPDVHESIAGIIAGRIREKYNKPTFILTKSEDGV-KGSGRSIEEYSMY--E 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + K GGH MAAGL++ + N ++A + P ID + Sbjct: 409 EMCKCSELFTKFGGHPMAAGLSLPQENVEPFRQKINEYAS--LTDDDLVPKIHIDVPMPV 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 V++ L+ P+G NP PVFA N ++ + VV + L+++ S + A Sbjct: 467 DYVSMRLVSEFSVLAPFGKDNPKPVFADKNLRVSRMWVVGKNNNVLRLSLISSYGTPINA 526 Query: 544 IAFRVYGTPL--------GEFLMQSRGKRMH-----VTGHLCVNYWRGSKRCQLRVLDAS 590 I F + + L ++ R + V +N +R ++ Q + Sbjct: 527 IYFGDIESFFDYIRQRFGSDALEAAQRGRFNNIVLSVVYSPKINVFRENESLQFEIQYYK 586 >gi|291528183|emb|CBK93769.1| exonuclease RecJ [Eubacterium rectale M104/1] Length = 586 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 170/600 (28%), Positives = 282/600 (47%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +W + AI K I + AR++ NR + D +FLN I + DP +L Sbjct: 3 KWYVSAKKADFA---AIGAKFGIDQVTARIIRNRGVIGDDAVNEFLNGKISD-IADPALL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + + Q I + KI I GDYD+DG S ++++ L + IPDR+ DGY Sbjct: 59 KDGQRLVDILAQKIVDKAKIRIIGDYDIDGVMSTYILVKALKRAGACVDYMIPDRVKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L++K +G ++T D G + + + +A G+ V+V DHH V Sbjct: 119 GLNVHLIDKAYEDGIDTVVTCDNGIAAIEEIAHAKELGMTVLVTDHHAVPFEDIKGIKIY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 +E A A+VNP++++ LC A V + +++L+YR + D K + ++ VA Sbjct: 179 KESKADAVVNPHQIECSYPYKELCGAAVAWKIVILLYRKIGIDGKEA-----MDFIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 ATV DV+PL G NR V GL N G+KAL+E NI + A + G+++GP + Sbjct: 234 FATVGDVMPLTGENRILVKAGLKSIHHTTNIGMKALLECCNIEAENVDAYHFGFVLGPCV 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L + D ++ +A +L LN +R+ M + +E A + D+ Sbjct: 294 NATGRLDTAKRALELFLCDRQEDAMRIASELVALNDDRKEMTAKGVETAVEIY--ERDNY 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+V+ H I G++A R++EK+ +P+F ++ EDG GSGRSIE + + Sbjct: 352 EKDRVLVIYLPDVHESIAGIIAGRIREKYNKPTFILTKSEDGV-KGSGRSIEEYSMY--E 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + K GGH MAAGL++ + N ++A + P ID + Sbjct: 409 EMCKCSELFTKFGGHPMAAGLSLPQENVEPFRQKINEYAS--LTDDDLVPKIHIDVPMPV 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 V++ L+ P+G NP PVFA N ++ + VV + L+++ S + A Sbjct: 467 DYVSMRLVSEFSVLAPFGKDNPKPVFADKNLRVSRMWVVGKNNNVLRLSLISSYGTPINA 526 Query: 544 IAFRVYGTPL--------GEFLMQSRGKRMH-----VTGHLCVNYWRGSKRCQLRVLDAS 590 I F + + L ++ R + V +N +R ++ Q + Sbjct: 527 IYFGDIESFFDYIRQRFGSDALEAAQRGRFNNIVLSVVYSPKINVFRENESLQFEIQYYK 586 >gi|326571651|gb|EGE21666.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis BC7] Length = 589 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 266/578 (46%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIIEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL TV D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + R+ L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA KL+ LNQ RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|296112582|ref|YP_003626520.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis RH4] gi|295920276|gb|ADG60627.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis RH4] gi|326577704|gb|EGE27580.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis O35E] Length = 589 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 268/578 (46%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL TV D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + R+ L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA+KL+ LNQ+RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLAIKLNQLNQSRRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|326560166|gb|EGE10555.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis 103P14B1] Length = 589 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 267/578 (46%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL TV D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTVADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + R+ L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIRQGRCVVGILAILEQAGRQHQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA+KL+ LNQ+RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLAIKLNQLNQSRRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIKKADFERFNQALQAVLLG-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|257468131|ref|ZP_05632227.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium ulcerans ATCC 49185] gi|317062416|ref|ZP_07926901.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium ulcerans ATCC 49185] gi|313688092|gb|EFS24927.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium ulcerans ATCC 49185] Length = 860 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 162/581 (27%), Positives = 293/581 (50%), Gaps = 26/581 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RWV + + Q + + +L NRN++ + K+FL+ +I+ + DP L Sbjct: 5 RWVYK---DNSLKNNKDIQTLNLDKDILNLLYNRNITEKEEIKNFLDVNIKN-IADPFSL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA +R+ QA N+E + ++GDYDVDG SV+L LS +N YIP R +GY Sbjct: 61 KDVDKAVKRLTQAKENNETVWVYGDYDVDGITSVSLCYLALSELGINVKYYIPLR-DEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N ++ +EG LIITVDCG +S+ + +A + GID+IV DHH++ + A A++ Sbjct: 120 GLNMEAIDHIKSEGGTLIITVDCGISSHKEIAHAASLGIDMIVTDHHEINNGNPEALAVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP R D+ +L G F+++ ++ L ++ ++ LD+VA+ TV D+VP Sbjct: 180 NPKREDNDYEFKYLAGVGTAFMMISAFFKTLGKE------EEVYKYLDIVAIGTVADIVP 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI---TAENLGYMIGPSINAGGRIG 312 L+ NR +V +GL +R GL LI+++ I ++G++I P NA GR+ Sbjct: 234 LLKENRIFVKEGLEHLKRSRWLGLNMLIKKIFEDHDIRKFNTYDIGFIIAPIFNAVGRLE 293 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I D + L N R+ ++ + ++A KV + + + + SV++ Sbjct: 294 DAKKAVELFIEKDHRVCSASIKDLLEKNSERKEIQEEIFQKAIEKV--ENEKLYENSVLI 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V + +H G++G++A+++ +++ +P+ + ++G S RSIEGF+I + ++ Sbjct: 352 VGEEGFHHGVIGIVASKILDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAIN--NFS 409 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+K GGH+ AAG +++ N ++A N + K+D L ++ Sbjct: 410 DLLIKYGGHSGAAGFSIKIENIEEFSRKLNEYAENAMEDSTLIKPVKVDKPLPFYKISYD 469 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +D + P+G GNP+P+F+ N + +R++ HL M +E + F Sbjct: 470 FLDKISLLEPFGFGNPSPLFSLDNCQFDGLRLIGKDKKHLMMNIIKNGNEIRNCVWFNSD 529 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + + + L + ++ + ++ V D Sbjct: 530 DV----FEDLVNLRNIDIAFKLKLETYKDRYQYKMYVEDIR 566 >gi|332653664|ref|ZP_08419408.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcaceae bacterium D16] gi|332516750|gb|EGJ46355.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcaceae bacterium D16] Length = 687 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 179/580 (30%), Positives = 282/580 (48%), Gaps = 25/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 W G + + L IP ++A +L R ++ D A+ L P ++ DP++ Sbjct: 4 KEWSMPSGSPRVRQNLEAA---GIPALLAAILAARGITQPDQARRLLTPGAEPVL-DPML 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D+AA R+ +A+ E + ++GDYDVDG S L+ L YIPDR+ +G Sbjct: 60 LRDMDRAAARVRRALETGEHLAVYGDYDVDGITSTCLLTDCLRRMGGQVTPYIPDRLEEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + ++G LI+TVDCG T+ + + +A G+DV+V DHH+ K A A+ Sbjct: 120 YGLNLEAIHTLADQGVTLIVTVDCGITAVEEVAFAAGLGVDVVVTDHHECKDPLPAAVAV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P+R D L GV + + + R DL A+ TV DV+ Sbjct: 180 VDPHRSDCPYPFKGLAGVGVALKLAMAVAGPERARQVF------EDYADLAAVGTVADVM 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 P+ G NR V GL GL LI+ P+T+ ++GY + P INA GR+G+ Sbjct: 234 PMTGENRTIVQTGLAALAHPKRLGLAQLIQEAGLGERPLTSVSIGYTLAPRINAAGRMGK 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L LL++ Q + LA +L LN+ R+ +E + ++ ++ Q Q IV+ Sbjct: 294 AALAGELLLTHSPQRAQELAQELCQLNRERQNIEGEIFQECIQRLDHQ----PQQGAIVL 349 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G+VG++A+RL EK+ P+F I + G G GS RS G ++ +++ + Sbjct: 350 ADPEWHQGVVGIVASRLSEKYTCPTFMI-CLDQGMGKGSCRSWGGINLFELLMTC--GDL 406 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGHA+AAG V N L ++ V + DG++ +++A + Sbjct: 407 LESFGGHALAAGFMVREENIPALAQRLRQGVLEQQAGQEPPSVLETDGIVQPQQLDVASV 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 + L++ P G GNP PV +QS V HL++ E++ L AI F Sbjct: 467 EALDALEPCGTGNPRPVLVITGAHVQSAVQVGRGRHLKLRLEAR-GSVLDAIFFSADAAQ 525 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 LG + G R+ V + +N +RG + QL+V+D P Sbjct: 526 LG----VTPGCRVDVAFYPQINEFRGVRSVQLQVVDLHPA 561 >gi|258424061|ref|ZP_05686943.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A9635] gi|257845682|gb|EEV69714.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A9635] Length = 757 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 160/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKAIERIKRAIVNDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNNQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGTVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|329770500|ref|ZP_08261878.1| hypothetical protein HMPREF0433_01642 [Gemella sanguinis M325] gi|328836249|gb|EGF85918.1| hypothetical protein HMPREF0433_01642 [Gemella sanguinis M325] Length = 752 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 160/581 (27%), Positives = 274/581 (47%), Gaps = 29/581 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 + W E L +++ I + +A++L +R ++ I+ K + + DP + Sbjct: 5 YNWNYPQYDETFLNDL---KEYNISENIAKILDSRGINKIEEVKKYFSDDYEEGY-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +A RI AI N EKI+++GDYD DG S L++ L + + YIP+R +G Sbjct: 61 MHDMKRAVERINNAIENEEKILVYGDYDADGITSTVLLVETLVSLGADVSSYIPNRFEEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN K I G LIITVD G D ++ A + G DVI+ DHH+++ E AYA+ Sbjct: 121 YGPNKDAFSKIIKSGISLIITVDNGIAGVDEVELANSLGCDVIITDHHKIQDEIPKAYAV 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + G L GV F + + I LLDLVA+ TV D+V Sbjct: 181 IHPEHPEGQYPFGKLAGVGVAFKLAHALLEIYPD-----------FLLDLVAIGTVADMV 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L NR +V +G+ + G+K L+E NI++ I + +G+ I P +N+ GR+ + Sbjct: 230 SLTDENRIFVKQGIELLNEDPRIGIKMLLELSNITTNIDEQTIGFYIAPRLNSIGRMDSA 289 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +G L+++D + LA +++ N R+ + +++ + + +DI+ SVI+V Sbjct: 290 KVGLSFLMAEDISVAKSLAEQIEEYNVQRKEVTENIVKDVIETI--ENNDIKNKSVIMVS 347 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 GD +H G++G++A+ + EK+ RP ++ +E G GS RS+ F+I ++ Sbjct: 348 GD-YHEGVLGIVASNIVEKYQRPVLIMNNKE-GILKGSARSVFNFNIYTAINK--IGDKF 403 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG + + NF + ID V + V+ ++ Sbjct: 404 IAYGGHTLAAGFSFDEQNFKEIEKALCDEFDEYKNNNELKSTKNIDIVSSLEEVSYQFLN 463 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 LE P+G P N K+ +L++T + L+ I+F+ Sbjct: 464 SLEVLKPFGMDFEKPNILLENAKVIEKVYFGADKQYLRLTIADEVGN-LECISFKDNMI- 521 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F + + + L NY+ G + Q ++D E Sbjct: 522 ---FKDVNVNDTIDLLCTLDKNYFNGRTKLQAHIIDMQVKE 559 >gi|260589632|ref|ZP_05855545.1| single-stranded-DNA-specific exonuclease RecJ [Blautia hansenii DSM 20583] gi|331083064|ref|ZP_08332181.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 6_1_63FAA] gi|260539872|gb|EEX20441.1| single-stranded-DNA-specific exonuclease RecJ [Blautia hansenii DSM 20583] gi|330405066|gb|EGG84603.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 6_1_63FAA] Length = 571 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 161/588 (27%), Positives = 277/588 (47%), Gaps = 33/588 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +WV + I+ + + ++AR++ NR ++ + +L+ +R L P L Sbjct: 3 KWVVAAKKADFQ---GISNRFGVDPVIARLIRNREQITDEEIDTYLHGKLRNLHP-WKAL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+ +++ I +KI I GDYD+DG S ++ + L + A++ IPDR+ DGY Sbjct: 59 KGIDELLNILIEKIQQKKKIRIIGDYDIDGVCSTYILFQGLKKANALADVDIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + L+E+ + IIT D G ++ + + YA + + V+V DHH++ EE Sbjct: 119 GISKELIERAYEKEIDTIITCDNGISAIEQIAYAKEKNMTVLVTDHHEIPYEEKEDGSIE 178 Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A A+VNP + +C A V F V+ ++ ++ L+ + Sbjct: 179 RFLPNADAIVNPKQEGCAYPFKEICGAMVAFKVVWGLFEKRNI-----PLSEIEELIPIA 233 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATV DV+ L+ NR V +GL + N GLKALI N + ITA ++G+++GP Sbjct: 234 AIATVGDVMDLVDENRILVKEGLKRIQNTNNEGLKALIRVNNLENREITAYHIGFVLGPC 293 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + LL+S D++E +LA L LN +R+ M +E+A + + + Sbjct: 294 INASGRLSTAKRALELLLSKDTKEASVLAEDLKELNDSRKDMTVKGVERAVEII--ENTE 351 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ V+VV H + G++A R++E++ +P F ++ E+G GSGRSIE + + Sbjct: 352 LKNDRVLVVYLPECHESLAGIIAGRIRERYTKPVFVLTKGEEGV-KGSGRSIEAYHM--F 408 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +L K GGH MAAGL++E N + + + ID + Sbjct: 409 QEMVKCRELLTKFGGHPMAAGLSMEEENIEKFRRKLNENC--TLTEEDMVEKIVIDVPMP 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 S V I LI L P+G GN P+FA + + + +V ++M + + Sbjct: 467 MSYVTIPLIRQLGQLEPFGKGNTKPIFAQKDIRFSNCKVFGKNRNVVKMKAQDSFGFGAE 526 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F L V + VN ++G + ++ + + Sbjct: 527 CIWFGDGDEFLERL---KEKDVWDVIYYPSVNSFQGRESIEMIIQNIR 571 >gi|332284079|ref|YP_004415990.1| single-stranded-DNA-specific exonuclease [Pusillimonas sp. T7-7] gi|330428032|gb|AEC19366.1| single-stranded-DNA-specific exonuclease [Pusillimonas sp. T7-7] Length = 574 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 175/580 (30%), Positives = 268/580 (46%), Gaps = 28/580 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A+ + I +++R+ R VS + L+P P LT Sbjct: 9 KLSTRSNNFEASQAL-EGAGIHPLLSRLWAARGVSHPNETRL---AWGALIP-PGQLTHV 63 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA+ + AI +K++I DYD DGA + A+ +R L + +P+R GYG + Sbjct: 64 QHAAQVLADAIQARKKLLIVADYDCDGATACAVGLRALRSMGAIVDFLVPNRFETGYGLS 123 Query: 139 PSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 P+++E + ++ITVD G S D ++ A G+DV++ DHH A A+V Sbjct: 124 PAVVELAVQHAAGKPDMLITVDNGIASVDGVEAAKQAGMDVVITDHHLPGDTLPQALAIV 183 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253 NPN+ +L GV+F +++ + LRQ + L +L DLVAL TV DV Sbjct: 184 NPNQPGCGFPSKNLAGVGVIFYLMLALRAELRQRGVYAADGGPRLDNLADLVALGTVADV 243 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRI 311 V L NR V +GL R + +LG+ +GP INA GR+ Sbjct: 244 VKLDANNRLLVTQGLQKMRSARMQAGVRALFAVAGREPRQASCFDLGFALGPRINAAGRL 303 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +LG L +DD E LA +L+ +NQ RR +E+ M E+A A + Q A+ + Sbjct: 304 ADMSLGINCLTTDDEGEALNLARQLETMNQERRGIEATMREEALAAI--QTSQPSIAASV 361 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429 V WH G+VGL+A+RLKE + RP+ A + DG+ GSGRSI + ++ Sbjct: 362 CVYHPDWHQGVVGLVASRLKETYWRPTLAFARAGDGELRGSGRSIPDVHLRDVLDLVSKR 421 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 GI++K GGHAMAAGLT+ + F + PV + DG L N Sbjct: 422 HPGIILKFGGHAMAAGLTLREDAYEVFIKAFDSAVREMSGKASFDPVIETDGSLETGYAN 481 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +GAG P P+F +++ R++ HL+++ E + + AI F Sbjct: 482 AEVASLLQQ-QVWGAGFPAPIFRDT-FQVRQQRLLKEKHLKLSLE-RGHQRFDAIWFNHA 538 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +R V L +N W G QL V A Sbjct: 539 DM---------LPERADVAYRLDLNVWNGITSAQLIVEYA 569 >gi|319400962|gb|EFV89181.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis FRI909] Length = 757 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 153/591 (25%), Positives = 280/591 (47%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W Q + + + + + IV +VL ++N+ ++ + + D Sbjct: 4 SKYNWDI--TQPDTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFKDT--NISHDY 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L+D KA RI AI ++E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 MLLSDMQKAIDRIKLAIDHNERILVYGDYDADGVTSTTILVSTLRLLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + + G+DVIV DHH++ A+ Sbjct: 120 EGYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPNFEYPFKYLCGAGVAYKLAQGLIKHPPQ-----------HFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V +GL + +KA++ + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRYIVKQGLKILNSHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD+ +E E LA +++ NQ R+ + S + ++A Q + Q ++ Sbjct: 289 DASLAAELLLSDEFEEAEFLAEQVEHFNQERKDIVSKITDEALILAEEQIN--QGHLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ +E GS RSIE + + Sbjct: 347 LAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSM--FDILNDHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L ++ + P K+D L + +NI Sbjct: 405 QLIDKFGGHHMAAGMTMPIDNIEGLHKELDEWMKELTVTTSLEPSIKVDAQLEETEINIK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I + P+G +P+F + ++S + + HL++T L A+ + Sbjct: 465 NIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL---GHSGLTALFWNHG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + +H+ G L +N W G++ Q + D + + + Sbjct: 522 HL----ASELEASQPIHIIGTLQINEWNGNQTPQFIIKDIAIDQLQILDYR 568 >gi|158336032|ref|YP_001517206.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina MBIC11017] gi|158306273|gb|ABW27890.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina MBIC11017] Length = 795 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 155/597 (25%), Positives = 268/597 (44%), Gaps = 35/597 (5%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S RW I + ++A VL N+ + S++ A+ FL P + L Sbjct: 5 SFPQQRWQI--ADPEHTLVDKIAIATGLSPLLAAVLANQGIGSVEAAQQFLAPESQSLPS 62 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 D + + AI + KI I GDYD DG S AL++R L + + IP R Sbjct: 63 PLEAFPDLAASLTLLQDAIASRHKIAICGDYDADGMTSTALLLRVLRALGADVDYAIPSR 122 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG N ++E+F + L++TVD G +YD + A G+ VI+ DHH + + P Sbjct: 123 MQEGYGINQRIVEEFAADNVTLVLTVDNGIAAYDPIVRARELGLTVIITDHHDLPPQLPP 182 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A A++NP + + S L GV +++ L+ + + LL+L L T+ Sbjct: 183 ANAILNPKLVPEDSPYRGLAGVGVAYVLATLLAQEQG------NTTLITPLLELFTLGTI 236 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI---SSPITAENLGYMIGPSINA 307 D+ PL+G+NR ++ +GL + G+++L++ + + +G+ +GP INA Sbjct: 237 ADLAPLVGVNRRWLQRGLALLPHSRLAGVQSLMQVSGCVSADQALKPDAIGFRLGPRINA 296 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ------ 361 GRI + LL +DD AM+ + NQ+RR + + + +A V T Sbjct: 297 VGRIADPQTVIELLTTDDPGIAFARAMQCEQANQHRRQLCADIEIEAIELVETLVRQGKA 356 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF--EEDGKGIGSGRSIEGF 419 + VI++ WH G++G++A+RL E++G P F ++ E+ GS R I F Sbjct: 357 PWQPEGDWVIMLVHPGWHHGVIGIVASRLVERYGLPVFIATYEAEDHTHIRGSARGIPEF 416 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+ + E L + GGH A G ++ ++ + +AH + P+ + Sbjct: 417 DVFAALQACDE--ALGRYGGHRAAGGFSLATDQLEKMRSHLRTYAHQTLQIDQLKPLVTV 474 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTF---- 533 D + + ++ L + + P G GNP P+F N ++ R V HL++T Sbjct: 475 DAQASFTQIDWDLYEQINQLHPCGIGNPEPIFWTANVEVVEQRPVGKDKSHLKLTLAHTE 534 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + ++ +A+R +R+ V L N W +L +L Sbjct: 535 SDDRQQLIKGMAWRWGTYY-------PLPQRIDVAYRLRENTWNQQTNLELEILGIR 584 >gi|330894548|gb|EGH27209.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. mori str. 301020] Length = 502 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 168/506 (33%), Positives = 258/506 (50%), Gaps = 16/506 (3%) Query: 96 MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 +I GD+D DGA + + + L + + +P+R GYG P ++E + QL+I Sbjct: 2 LIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLI 61 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S + + A G+ V+V DHH E A A+VNPN+ L GV Sbjct: 62 TVDNGISSVEGVAAAKAAGLQVLVTDHHLPGHEPPAADAIVNPNQPGCTFPSKSLAGVGV 121 Query: 215 VFLVLVLIYRILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 +F VL+ + LR +L LLDLVAL +V DVVPL NR V +GLM Sbjct: 122 IFYVLMALRARLRDTGWFESNQRAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMR 181 Query: 271 ARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 R + PGL+A++E S IT+ +LG++IGP +NA GR+ + +LG L+ DD Sbjct: 182 IRAGRARPGLRAILEVARRESSHITSTDLGFIIGPRLNAAGRLDDMSLGIECLLCDDPTL 241 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +A++LD LNQ+R+ +E M +A A++ + + + + + WH G++G+LA+ Sbjct: 242 AREMAVQLDELNQDRKSIEQGMQREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILAS 300 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGL 446 RLKE++ RP+ A + +G GS RS+ GF I + A ++ K GGHAMAAGL Sbjct: 301 RLKERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGL 360 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++ NF + F + T DG L ++ L L +AGP+G Sbjct: 361 SLPEENFPAFAEAFDLEVRRQLDEQDLTGRLLSDGSLAVEEFHLELARALRNAGPWGQHF 420 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P+F +L RVV HL+M +++ S L IAF V + + + Sbjct: 421 PEPLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR----DIWPNPNIRWV 475 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASP 591 + L +N +RG++ QL V+ +P Sbjct: 476 ELAYKLDLNEFRGNETVQLMVVHIAP 501 >gi|313884153|ref|ZP_07817919.1| single-stranded-DNA-specific exonuclease RecJ [Eremococcus coleocola ACS-139-V-Col8] gi|312620600|gb|EFR32023.1| single-stranded-DNA-specific exonuclease RecJ [Eremococcus coleocola ACS-139-V-Col8] Length = 776 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 161/580 (27%), Positives = 279/580 (48%), Gaps = 27/580 (4%) Query: 16 FRWVSLLGQEGINR--ALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 + WV + +K + R+ R + L S + + DP Sbjct: 8 YEWVLPTLDSNSSDLSVFKEAEKKYSSAFL-RLCYQRGIDSLETLTALEESSQAIFHDPF 66 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L D KA R+ AI + E I+I+GDYD DG S ++ L N YIP+R++D Sbjct: 67 ELFDMAKAIDRLQAAIASQEAILIYGDYDADGITSTLILYESLQAVGANVTYYIPNRLID 126 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN ++ I++G QLI+T D G ++A+ YA ++G+DVIV DHH+++ AYA Sbjct: 127 GYGPNKDRYQRLIDQGCQLILTCDNGVAGFEAIDYANHRGVDVIVTDHHEIQDHLPNAYA 186 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P G L AGV V+ + + L ++L A+ TV D+ Sbjct: 187 IVHPRHPQGSYPFGDLSGAGVALKVVSALLEEIP-----------LESVELAAIGTVADL 235 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIG 312 V L NR V +GL + R+ GL ++ + + +G++IGP +NA GR+G Sbjct: 236 VSLTDENRTIVKQGLQLMRQSSRLGLDLILTNNQVDRNKLTSDTIGFIIGPRLNAIGRLG 295 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + + LL S DS E + L ++ NQ R+ + ++ Q + ++ + +I+ Sbjct: 296 DPSPAFELLASFDSSEAQALYELIESKNQERQAIVKKIMTQIQTRIESYPS---LPDIII 352 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 W G+VG++A RL EK+ RP+ + G GSGRS+ ++ + + Sbjct: 353 EADPDWPAGVVGIVAGRLLEKYHRPALVFQEQRDQGVYKGSGRSLPRVNLFDW--LSQNK 410 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 G L++ GGH+ AAG+T+E F + + A++ K+DG L +N+ Sbjct: 411 GFLMQFGGHSQAAGMTIESSQFPAFKEAMLSSSQAYQAAILAPSQLKLDGRLAIDEINLD 470 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQD-SETLQAIAFRVY 549 L+ ++ GP+G NP P++ + +++ I+ + H+++ D +L+ + F + Sbjct: 471 LVQEIDHLGPFGMDNPQPLWLLEDVQIERIQAIGDQTHIKLRVRGSDQGSSLEVLGFSMA 530 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 G S G ++ + G L +N W+G ++ Q+ + D Sbjct: 531 DQCQG----LSPGMQVSLVGQLVINEWQGRRQVQIHMKDI 566 >gi|169831063|ref|YP_001717045.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Desulforudis audaxviator MP104C] gi|169637907|gb|ACA59413.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Desulforudis audaxviator MP104C] Length = 857 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 165/579 (28%), Positives = 280/579 (48%), Gaps = 35/579 (6%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W + ++R + ++ I ++ A++LVNR + ++ A+ FL+ + L P + Sbjct: 5 REWRLKKPEPVLSR--MLARECGISELTAQLLVNRGIITVREARIFLDGDLDSLW-SPYL 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D RI A+ EKI+++GDYD DG + ALM+ L +IP R DG Sbjct: 62 LRDMAPTVDRIRGALAAGEKILVYGDYDADGMTAAALMVAALRTLRGRVEYHIPWR-ADG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG NP ++E+ +G L+ITVDCG ++ ++ A G+DV+V DHH+ +P + Sbjct: 121 YGLNPEVLERAAADGVGLVITVDCGVSARREIERAQALGLDVVVTDHHE-PQGLLPPVPV 179 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP R D L GV F + + L + P L L L TV DV+ Sbjct: 180 VNPRRPDCNYPFKDLAGVGVAFKLAQAL---LGDELPPP-------FLGLACLGTVADVM 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL G NR V GL + NPG+ AL + + ++ + I P +NA GRIG Sbjct: 230 PLRGENRLLVRHGL--PQLLDNPGIAALGACQGENPVVR--DVAFGIAPLLNAAGRIGRP 285 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LG +L++ E LA +L LN+ R+ +E + A++ + V+V+ Sbjct: 286 ELGVEILLA-GPGEAAALAAQLAALNEERKYLEEKVSAAVLAELSGLP---EVPPVVVLA 341 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ WHPG++G++A+RL + GRP I+ + +G GS R+ EG+++ + + E +L Sbjct: 342 GEDWHPGVIGIVASRLAGRLGRPVALIA-VDGDEGRGSIRAGEGWNLVEALESCRE--VL 398 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH AAG T+ + ++A +P + P +I+ ++ + ++ Sbjct: 399 TRFGGHRCAAGFTLPTAAIPGFREAICRYAR-HLPVPASGPELEIEALVTLDQLTPEVLR 457 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 +E+ P+GA N P+ A + ++ V HL++ E Q + I F + Sbjct: 458 EIEALEPWGAQNDPPILAAEDLRVVKHYRVGREGEHLKLVLE-QGRTIISGIGFGLA--- 513 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + +R+H+ +N W G + +++V+D P Sbjct: 514 -PAHPEIAECRRVHLAFVPVINRWNGRETPEIKVVDWKP 551 >gi|121606148|ref|YP_983477.1| single-stranded-DNA-specific exonuclease RecJ [Polaromonas naphthalenivorans CJ2] gi|120595117|gb|ABM38556.1| exonuclease RecJ [Polaromonas naphthalenivorans CJ2] Length = 580 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 174/595 (29%), Positives = 263/595 (44%), Gaps = 37/595 (6%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A+ Q I ++A++ R V A L+ + L+P P L Sbjct: 2 KIQVRDVPPRSLWALQQA-GIHPLLAQLYAARGVH---AAAELDDGLARLLP-PSSLKGA 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 +AA + A+ + I + DYD DGA + A+ +R L N +PDR+VDGYG Sbjct: 57 REAAILLADAMAAGKHICVVADYDCDGATACAVALRGLKLLGATNVGYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA-----Y 192 + E+ GA +++TVD G S D + A G+ V+V DHH Sbjct: 117 TAPIAERVKATGADVLVTVDNGIASIDGVARAKALGLQVLVTDHHLPALFNEKIGLPDAD 176 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATV 250 +VNPN+ + GV+F VL+ + LR+ L +LL LVAL TV Sbjct: 177 VIVNPNQPGCGFESKSMAGVGVMFYVLLALRAELRERGAFDAAHQPKLDTLLPLVALGTV 236 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAG 308 DVV L NR V +GL R P A + T + G+ +GP INA Sbjct: 237 ADVVKLDANNRRLVAQGLKRIRAGALPAGIASLFKAAGRQAPAATTFDFGFALGPRINAA 296 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQ 367 GR+ + LG L++DD + LA LD +N+ RR +ES M +QA+ D D + Sbjct: 297 GRLADMRLGIECLLTDDPARADELAQMLDGINRERRQIESGMRDQAQLAADAMIDEDEEP 356 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGK 423 I + +H G+VG++A+R+K+K RP+F + ++ + GSGRSI GF + Sbjct: 357 PPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQAPGKEHELKGSGRSIPGFHLRD 416 Query: 424 MVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + G+L++ GGHAMAAG T+ NF Q+ A + A T + DG Sbjct: 417 ALDLVAKRHPGVLLRFGGHAMAAGCTIAEENFEAFEYGLQQVAREWLDAATLTRRLETDG 476 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSET 540 L L+D L +G G P F ++ S R+V HL + + + E Sbjct: 477 PLAPEYRRADLVDTLHK-EVWGQGFAAPTF-SEEVEVVSQRLVGDDKHLSLKLKHR-GEP 533 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL--DASPVE 593 + I F + R+ + L N W+G +R Q + + P E Sbjct: 534 VDGIWFGHTD---------ALPARVTLAFRLDTNEWKGIRRVQFLIEAAEIRPQE 579 >gi|169824508|ref|YP_001692119.1| single-strand DNA-specific exonuclease [Finegoldia magna ATCC 29328] gi|167831313|dbj|BAG08229.1| single-strand DNA-specific exonuclease [Finegoldia magna ATCC 29328] Length = 580 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 162/595 (27%), Positives = 277/595 (46%), Gaps = 38/595 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ N I++K+ I ++A++L+NRN++ + FLNP+ +P ++ Sbjct: 3 KWLINNRGNNYN---EISKKYNIHPLIAKILLNRNIT--DFEKFLNPNAENSYHNPFLMK 57 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA I+ I ++EKI I GDYD DG +S ++ L + + + IP+R+ DGYG Sbjct: 58 DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYFTDKISYDIPNRMTDGYG 117 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191 + S+++K I + LIIT D G ++ + YA GI +IV DHHQ K A Sbjct: 118 ISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNA 177 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VNP + LC AGV + ++ I +LL VA+ TVC Sbjct: 178 DAVVNPQQQSCKYPFKSLCGAGVAYKLIQAINIKKG-----YGMLQCENLLQYVAMGTVC 232 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D+V L NR +V KGL N GLK LI I + + +LG++IGP INA GR+ Sbjct: 233 DIVDLKDENRYFVTKGLEEINNTDNYGLKCLINMTGIKNAVNVYSLGFIIGPCINAAGRL 292 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LG L ++ +E A L LN+ R+ + +A + + ++ ++ Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEII--ENTALKNDDIL 350 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 + + H + G++A R+KEK+ +P+ ++ GSGRSI ++I F Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTESANKNLLKGSGRSISEYNI--FEEFDEF 408 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGH MA GL++E+ K ++ + ID ++ Sbjct: 409 REMFVSFGGHPMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILIDSSFYIDKIDF 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546 LI+ + + P+G NP P+ + ++ +++ L+M ++++ + AI F Sbjct: 467 DLIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKL-LKNNKAIDAILFTD 525 Query: 547 ---------RVYGTPLGEFLMQSR--GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +G + + L S + + + +N + K QL ++D Sbjct: 526 AIEKYTYLLGKFGENVLKELENSISCNAYIDILYYPEINDFNNVKNIQLNLIDLR 580 >gi|326573559|gb|EGE23522.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis 101P30B1] Length = 589 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 176/578 (30%), Positives = 265/578 (45%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL T+ D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTIADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + + L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIHQGQCVVGILAILEQAGRQYQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA KL+ LNQ RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|326569743|gb|EGE19793.1| single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis BC8] Length = 589 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 176/578 (30%), Positives = 265/578 (45%), Gaps = 27/578 (4%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A+ + +ARVL R V ++ I L+ ++ D A I Sbjct: 18 EPLNQALRDQLD-SSTLARVLQARGVHD---ISQIDTHICQLLAAADLM-GIDTAVTLID 72 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 AI E+I+I GD+D DGA S ALM+R L + +PDR GYG P ++E Sbjct: 73 TAIDQGERILIVGDFDCDGATSTALMVRVLRQMGALVDFLVPDRFKFGYGLTPQIVEHGA 132 Query: 147 N-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 LIITVD G +S+D + A GI V++ DHH PA A+VNPN+L G Sbjct: 133 ALYRPNLIITVDNGISSHDGVATAHQMGIKVVITDHHLTTKPSPPADAVVNPNQLGCHFG 192 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 +L GV F V+ + + RQ + + LDLVAL T+ D+ L NR V Sbjct: 193 SRYLVGVGVAFYVMGRLAKHRRQLG--KSSASVAKYLDLVALGTIADLGVLDKNNRILVT 250 Query: 266 KGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + + L + IT+++ G+ I P INA GR+ +G L++ Sbjct: 251 HGLQLIHQGRCVVGILAILEQAGRQYQTITSDDFGFAIAPRINAAGRMDNMRIGVECLLT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGI 382 DD E LA KL+ LNQ RR +E +M + A A V + D IV+ D WH G+ Sbjct: 311 DDWGEAHRLASKLNQLNQARRHVEMSMKDDAIAIVQSLSEFDETPPKGIVLYQDDWHQGV 370 Query: 383 VGLLAARLKEKFGRPSFAISFEED------GKGIGSGRSIEGFDIGKMVS--FAVEEGIL 434 +G++A RLKEK RPS + + GS RSI G I ++ ++ Sbjct: 371 IGIVAGRLKEKLYRPSIVFAPADTALVGKSDDIKGSARSIAGIHIRDVIESVALAHPDLI 430 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAGLT+++ +F R Q + + DG L +++ +D Sbjct: 431 KHFGGHAMAAGLTIQKADFERFNQALQAVLLD-FDDDVFYEQKFTDGALLPDEFSLSFVD 489 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPL 553 L++ +G G PVF ++ + R++ HL+++ + + + AI F Sbjct: 490 RLKNISVWGNGFVPPVFDGK-FEVINHRILKDKHLKLSLKMAGVQYPIDAIWFNYQADSW 548 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 R +H+ L +N W+GS+ QL + D + Sbjct: 549 -----DYRAFGVHILYTLDINEWQGSQSLQLVIKDLAV 581 >gi|291525691|emb|CBK91278.1| exonuclease RecJ [Eubacterium rectale DSM 17629] Length = 586 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 170/600 (28%), Positives = 282/600 (47%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +W + AI K I + AR++ NR + D +FLN I + DP +L Sbjct: 3 KWYVSAKRADFA---AIGAKFGIDQVTARIIRNRGVIGDDAVNEFLNGKISDI-ADPALL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + + Q I + KI I GDYD+DG S ++++ L + IPDR+ DGY Sbjct: 59 KDGQRLVDILAQKIADKAKIRIIGDYDIDGVMSTYILVKALKRAGACVDYMIPDRVKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L++K +G ++T D G + + + +A G+ V+V DHH V Sbjct: 119 GLNVHLIDKAYEDGIDTVVTCDNGIAAIEEIAHAKELGMTVLVTDHHAVPFEDIKGIKIY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 +E A A+VNP++++ LC A V + +++L+YR + D K + ++ VA Sbjct: 179 KESKADAVVNPHQIECSYPYKELCGAAVAWKIVILLYRKIGIDEKET-----MDFIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 ATV DV+PL G NR V GL N G+KAL+E NI + A + G+++GP + Sbjct: 234 FATVGDVMPLTGENRILVKAGLKSIHHTTNIGMKALLECCNIEAENVDAYHFGFVLGPCV 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L + D ++ +A +L LN +R+ M + +E A + D+ Sbjct: 294 NATGRLDTAKRALELFLCDRQEDAMRIASELVALNDDRKEMTAKGVETAVEIY--ERDNY 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+V+ H I G++A R++EK+ +P+F ++ EDG GSGRSIE + + Sbjct: 352 EKDRVLVIYLPNVHESIAGIIAGRIREKYNKPTFILTKSEDGV-KGSGRSIEEYSMY--E 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + K GGH MAAGL++ + N ++A + P ID + Sbjct: 409 EMCKCSELFTKFGGHPMAAGLSLPQENVEPFRQKINEYAS--LTDDDLVPKIHIDVPMPV 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 V++ L+ P+G NP PVFA N ++ + VV + L+++ S + A Sbjct: 467 DYVSMRLVSEFSVLAPFGKDNPKPVFADKNLRVSRMWVVGKNNNVLRLSLISSYGTPINA 526 Query: 544 IAFRVYGTPL--------GEFLMQSRGKRMH-----VTGHLCVNYWRGSKRCQLRVLDAS 590 I F + + L ++ R + V +N +R ++ Q + Sbjct: 527 IYFGDIESFFDYIRQRFGSDALEAAQRGRFNNIVLSVVYSPKINVFRENESLQFEIQYYK 586 >gi|283779935|ref|YP_003370690.1| single-stranded-DNA-specific exonuclease RecJ [Pirellula staleyi DSM 6068] gi|283438388|gb|ADB16830.1| single-stranded-DNA-specific exonuclease RecJ [Pirellula staleyi DSM 6068] Length = 590 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 176/587 (29%), Positives = 285/587 (48%), Gaps = 20/587 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW R + + + I+ ++LV R + D AK+FL+ L DP + Sbjct: 2 RRWRIHAHDAD--RIAYLERTTGLSPIIVQLLVARGIYQPDAAKEFLDAKFGGLR-DPEL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +AA R+ AI KI+++GDYD DG ++++ L +A+ Y+P+R+ +G Sbjct: 59 LPGATEAAERLFAAIEAQRKIVVYGDYDADGMTGTSILLGCLKLLRADASYYVPNRLEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + +E +GAQL+I+VDCG S + A G+++IV DHH+ SE A Sbjct: 119 YGLSNTALESLAAKGAQLVISVDCGIASLSEARRAKELGLELIVTDHHEFASELPEAAVC 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCD 252 V+P G LC AGV V + + Q KV + LLS + L A+ TV D Sbjct: 179 VHPRLPGTAYPFGGLCGAGVALKVAWALCQKASQSKKVTDAMRTYLLSAMGLAAIGTVAD 238 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGR 310 VVPL+ NR V GL + Q GL AL+E +++E++ + I P +NA GR Sbjct: 239 VVPLVDENRILVRHGLTYLKSQPMIGLGALLELTGLTKKQSLSSEDIAFTIAPRLNAAGR 298 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 G++ L LL +D++ LA + LN +R +E ++ A + Q + ++ Sbjct: 299 FGQAQLAVELLTTDNASRAASLAEYIHQLNSSRESLERSIQLAAVKQAKEQFNPDDDPAL 358 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA 428 V+ G WH G++GL+A RL EKF RP I+ ++ G GS RS+ GF++ + ++ Sbjct: 359 -VLAGRGWHAGVIGLVAGRLAEKFNRPVVLIALDQLGLKPGTGSARSVAGFNLHEALTA- 416 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 LV GGHA AAGL +E + F +FA + + T +ID V Sbjct: 417 -SGEHLVGYGGHAAAAGLRIEESKVEAFREAFCEFAASQIRPSERTGELRIDAESQLCEV 475 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVV--NLAHLQMTFESQDSETLQAIA 545 N++ I +E P+G GNP P+ L + + H+ + + T++ + Sbjct: 476 NVSTIRQIEQMEPFGCGNPRPLLCASGVTLVEPPKRIGGGERHIAIKLQQA-GVTMRGVG 534 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F + + L Q+ G + + +N +RG +L+++D P Sbjct: 535 FGMGDQC--DELAQAVG-PLDIAYRPVINEFRGRVTAELQLVDWRPT 578 >gi|302878865|ref|YP_003847429.1| single-stranded-DNA-specific exonuclease RecJ [Gallionella capsiferriformans ES-2] gi|302581654|gb|ADL55665.1| single-stranded-DNA-specific exonuclease RecJ [Gallionella capsiferriformans ES-2] Length = 562 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 166/578 (28%), Positives = 269/578 (46%), Gaps = 24/578 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 +T + P +A++ R + K L+ + L+ L + Sbjct: 3 QITPRDIPAIAFHNLTDE-GYPPAMAKIFAARGI---ENKVQLDATFAHLV-SFEYLKNA 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 A + AI +K+++ DYD DGA + A+ +R L + + +P+R GYG Sbjct: 58 KTMAVMLADAIAARKKLLVIADYDCDGATACAVAVRGLRAFGASIDFIVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P +++ +++TVD G S D + A G+ V V DHH A +VNPN Sbjct: 118 PEIVQLAHESKPDILLTVDNGIASVDGVAAANRLGMQVFVTDHHLPGDMLPDAACIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPL 256 + HL GV+F VL+ + LR ++ L LLDLVAL TV DVV L Sbjct: 178 QPGCEFPSKHLAGVGVIFYVLLALRAELRNRGQLTEAQGRALPELLDLVALGTVADVVRL 237 Query: 257 IGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 NR V +GL+ R R L I + +LG+ +GP +NA GR+ + Sbjct: 238 DQNNRILVQQGLLRIRAGRACKGISALLQVSKKSPEKIVSLDLGFTVGPRLNAAGRLDDM 297 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +LG L++DD +A +LD LN+ RR +E+ M E A + + Q + + Sbjct: 298 SLGINGLLTDDEGVAMGIATQLDTLNRERRSIETDMQEGAL--AVLDTVNPQDNFSLTLF 355 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI- 433 + WH G++G+LA+RLK+KF RP A + G+ GSGRSI G + + + Sbjct: 356 DESWHQGVIGILASRLKDKFHRPVIAFAQANSGELKGSGRSIAGLHLRDALDLVSKRSPT 415 Query: 434 -LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + K GGHAMAAGL+++ +F F++ A ++ + DG L++S + + Sbjct: 416 LIKKFGGHAMAAGLSIDAADFDAFVAAFEQVASELLTPNDLLQRIETDGPLDSSGLTLEA 475 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +L+ +G G P P F + ++ + RVV HL++ + + +++ AI F P Sbjct: 476 ARLLDE-QVWGQGFPAPQFD-DDFEVLNQRVVGEKHLKLQLATDEGQSIDAILFGH-NEP 532 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L EF +H L +N ++G++ QL V Sbjct: 533 LPEF--------IHAVYSLSINEYKGAQTLQLIVRHWE 562 >gi|154505867|ref|ZP_02042605.1| hypothetical protein RUMGNA_03409 [Ruminococcus gnavus ATCC 29149] gi|153793885|gb|EDN76305.1| hypothetical protein RUMGNA_03409 [Ruminococcus gnavus ATCC 29149] Length = 570 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 182/584 (31%), Positives = 295/584 (50%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 +W + + + I +K+ I I+AR++ NR++ D +LN +I L D +++ Sbjct: 3 KWFVSMKKADFTQ---IAEKYHISPIIARLIRNRDILGDQNIDYYLNGTIADLH-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + D A + + I EKI + GDYD+DG + ++ L + IPDR+ DGY Sbjct: 59 KNMDTAVEILEEKIREGEKIRVIGDYDIDGVNATYILKTGLESLGALVDTDIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L+++ + +G IIT D G + + Y QG+ +IV DHH+V Sbjct: 119 GLNQMLIDRALEDGVDTIITCDNGIAAASEIAYGKAQGMTIIVTDHHEVPYLEAGGEKEY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+VNP+ D LC A VV+ V+ +Y ++ QD D+ L++ VA Sbjct: 179 LIPDADAVVNPHLPGDPYPFKGLCGAAVVYKVVEALYNVMGQD-----ADDVDFLMENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ L+ NR +V +GL + +R N GLKAL+E + ++A ++G++IGP I Sbjct: 234 IATVGDVMDLVDENRIFVKQGLEMLKRTQNEGLKALMECTQVPIERLSAYHIGFVIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + +E M+A L LN +R+ M +EQA ++ + D+ Sbjct: 294 NASGRLDTAKRALELLEVKNRREAVMMAEDLKALNDSRKEMTEKGVEQAVEQI--ETTDL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+VV H I G++A RLKEK+ +P F ++ E G GSGRSIE + + Sbjct: 352 KEDRVLVVYLQDCHESIAGIIAGRLKEKYYKPVFVLTQGEHGV-KGSGRSIESYHM--FE 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + K GGH +AAGL++E N R + + + P ID L Sbjct: 409 EMCKCRALFTKFGGHKLAAGLSLEEENVERFRRTINELCE--LTSQDLMPKVSIDMQLPL 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 + V LI+ LE P+G GN P+FA N K+Q++RV+ L+ ++ ++A Sbjct: 467 AYVTEELIEELELLEPFGKGNTKPLFAEKNLKVQNLRVIGKNQNVLKFQVLDRNGRKMEA 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 I F + + + +T + VN +RG+K Q+ V+ Sbjct: 527 IYFGEVQECMEYL---QGKEEVALTFYPSVNEYRGNKSIQITVV 567 >gi|289550599|ref|YP_003471503.1| Single-stranded-DNA-specific exonuclease recJ [Staphylococcus lugdunensis HKU09-01] gi|289180131|gb|ADC87376.1| Single-stranded-DNA-specific exonuclease recJ [Staphylococcus lugdunensis HKU09-01] Length = 758 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 160/591 (27%), Positives = 288/591 (48%), Gaps = 29/591 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + I+ I +K+ + I+ +VL ++++ + + LN + +P Sbjct: 4 SKYTWNHNEPTQYID--EQIAKKYKLSPIIKKVLESKHIVNEKDIEGLLNGQ--QQLHEP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D KA RI AI E+I+I+GDYD DG S +M++ L YIP+R Sbjct: 60 WLLSDMTKAIERINLAIDKHERILIYGDYDADGVTSTTIMVKTLQSLGAEVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G Y ++ G+DVIV DHH++ S A+ Sbjct: 120 EGYGPNELAFKNAYDEGVSLIITVDNGIQGYREIEMIQELGVDVIVTDHHEMGSTLPDAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + V + + N VP + L ++ T+ D Sbjct: 180 AIVHPMHPEFDYPCPNLCGAGVAYKVSQALLK-----NNVPPY-----YIALASIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR V GL + + AL+ N + PI E +G++IGP +NA GR+ Sbjct: 230 LVSLTDENRTIVKTGLSILNDYQPIQIAALLNEANYNDPIDEETIGFIIGPRLNAVGRLE 289 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+++D++E LA +++ N R+ + S + E+A + + ++ Sbjct: 290 DASLAAELLMTEDAEEAAFLAEQVNHFNNERKDIVSKITEEALLLAKEEVA--KGRQFLL 347 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+R+ E +G P+ ++ +E GS RSIE + + + Sbjct: 348 LAKENWHEGVLGIVASRIVETYGLPTLILNIDDEQHYAKGSARSIEQVSM--FEILSDHQ 405 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T+ N L + + N+ +ID + + + Sbjct: 406 NLISKFGGHHMAAGMTMPIENISELREGLNAWMANLAQTTSFDQKKQIDVKITEDEITVN 465 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I +E P+G P+F + + S++ + HL+MT + + TL + Sbjct: 466 NIYDIERLKPFGIDFNKPLFELDDVNVNSLKAIGKDKNHLKMTIGNSNLATL---YWNS- 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ + E + + +++ G L +N W G++ Q + D + + + Sbjct: 522 GSLVDELELN---QPINMIGQLQINEWNGNQSPQFIIQDIAINQQQILDYR 569 >gi|325846694|ref|ZP_08169609.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481452|gb|EGC84493.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 576 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 169/590 (28%), Positives = 285/590 (48%), Gaps = 32/590 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 +W + L + I + A +L NR++ + F+NPS+ L DP +L Sbjct: 3 KWYIYNKKNNYLSNL---KNENITKLEALILANRDIVEPNVIESFINPSLEKLH-DPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +A I++ + N + I IFGDYD DG +S ++ L + + + IPDR++DGY Sbjct: 59 NDMKEAIDLIIETMENGQSIRIFGDYDQDGISSTMTLLDGLLYFYDDISYDIPDRVIDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH---------QVKS 186 G + ++++ I L+I+ D G T+ D ++ GI VI+ DHH +K Sbjct: 119 GISDRMIDRAIEAKVSLVISCDNGITAIDQVKKLKENGIRVIITDHHQVIKESNGEWIKQ 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ++NP RLD+ LC AGV F ++ +Y+ L D L LL+ VA Sbjct: 179 ILPDADCVINPKRLDNTYPFDDLCGAGVSFKLMQALYQRLEGD-----RDYLYGLLEYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCDVV L NR +V +GL +KALIE + + + A LG++IGP +N Sbjct: 234 MGTVCDVVSLTDENRIFVREGLKRINNTEKLAIKALIEENSWNKEVNAYTLGFVIGPCMN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L +L+ +D ++ A KL LN R+ + S LE++ + + Sbjct: 294 ATGRLSTAKLAIDMLMEEDIDKIHSYAKKLVSLNNERKDLTSIGLEKSMEIIKDK--KYY 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMV 425 + +I+V+ D I G++A R+KEKF +P+ ++ G GSGRSIE ++I + Sbjct: 352 KDDIIIVDVDNIEESICGIIAGRIKEKFNKPTIIMTGSNQEGILKGSGRSIEAYNIYTEI 411 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + IL GGH MA GL++++ + + + ID + Sbjct: 412 FE--IKDILESFGGHPMACGLSIKKDRVDEFRKKLND--KSKLTKDDFEEIINIDAQIPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +++ + L P+G NP FA N ++++I ++ + L+MT +++ L+A Sbjct: 468 DKLSLEFAESLNRLEPFGKDNPKARFADKNLEIKAINMIGKNNNTLKMTL-NKNGRDLEA 526 Query: 544 IAFRVYGTPL---GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F +F G ++ + VN +RG K Q++++D Sbjct: 527 IKFNAVKDYNYLSDKFNTNIVGNKIDAVFYPDVNEFRGQKNLQIKLIDIR 576 >gi|156564062|ref|YP_001429805.1| RecJ [Bacillus phage 0305phi8-36] gi|154622759|gb|ABS83639.1| ssDNA exonuclease [Bacillus phage 0305phi8-36] Length = 577 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 159/573 (27%), Positives = 259/573 (45%), Gaps = 36/573 (6%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 D++ +L R + + ++FL + + L +P + D KA RI++A+ E I IFG Sbjct: 17 DDLIYDILEARGI--EDVEEFLRITKKKLH-NPYKMRDMKKAVTRIIEAVQKKETIGIFG 73 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYD DGA+S A+ + L ++ ++PDR DGYG N ++ F + G L+IT D G Sbjct: 74 DYDADGASSTAIWVLILRELGLDVMYFVPDRFKDGYGVNQRGLDLFADNGVDLVITCDTG 133 Query: 160 STSYDALQYATNQGIDVIVIDHHQV-----------------KSEEIPAYALVNPNRLDD 202 T+ + YA N+G+D+I+ DHH+ IP +VNP R D Sbjct: 134 ITAIQQVAYAKNKGMDIIITDHHEPQESSAYKDDVQKVGQHIGDYLIPDTIVVNPKRPDC 193 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 L GV F +L + + + +D+VAL T D++ +I NR Sbjct: 194 KYPFKGLAGVGVSFKILCAVCDKIHPAGRAGA----YQYMDIVALGTFADMMDIIDENRV 249 Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322 G+ + R+ N GL L + IT++++G+ I P INA GRI + +LI Sbjct: 250 IGKLGIDMMNRKPNRGLYQLFRANELKQ-ITSQDIGWTIAPCINAAGRIVSAEEAVDMLI 308 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 S + A KL +N+ R+ + + V D ++IV GI Sbjct: 309 STNKLAAYRCAKKLVEINKERKELTKTYVGNIIKSVEADQID-NPTNIIVHYYPGIPEGI 367 Query: 383 VGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 VGL+A+RL F +PS ++ +E G GSGRSI GFD+ S + ++ GGHA Sbjct: 368 VGLIASRLMNHFYKPSIIMTDADEPGLYKGSGRSITGFDL--FTSLMRQTDVMEGFGGHA 425 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 MA GL+V F L + A ++ + P +D ++ + +++ +D + P Sbjct: 426 MACGLSVTNDKFQELKTRMEFLADTMISEIDLQPKVYVDAIVKGNIIDLDFVDEMNKMEP 485 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +G G+ P F ++ V HL S +T I F +Y ++ Sbjct: 486 FGRGHAQPSFMMEKMRVIREMPVGDEKNHL-WALMSDGKKTFSTIGFFLYE----KYEAL 540 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + K + + N ++G QL++ D Sbjct: 541 GKPKNIDIVFVPDRNEYKGKVDVQLKIKDLRKA 573 >gi|296111868|ref|YP_003622250.1| Single-stranded DNA-specific exonuclease, 5'-3' [Leuconostoc kimchii IMSNU 11154] gi|295833400|gb|ADG41281.1| Single-stranded DNA-specific exonuclease, 5'-3' [Leuconostoc kimchii IMSNU 11154] Length = 654 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 179/586 (30%), Positives = 283/586 (48%), Gaps = 28/586 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72 S W L + + I I A ++ + + A +L PSI L DP Sbjct: 2 SQKNWQILSKPPEKV-VRQLQTQLNIDQIAATIVAQKGYTTPETAFQYLQPSIEQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + L D DK R+ +A + EKI+++GDYD+DG S A+M+ L + YIP+R + Sbjct: 60 MQLHDMDKTFERLTEAAFGGEKIVVYGDYDLDGVTSTAIMVEALEVLGADVTAYIPNRFL 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ I+ GAQ+I+TVD G + ++A+ YA QG+DVI+ DHH++ A+ Sbjct: 120 DGYGPNIDAYKRLIDAGAQVIVTVDNGVSGHEAVAYAMAQGVDVIITDHHEIGPTLPEAF 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDL-LSLLDLVALATVC 251 A+V+P D L GV F V + L V DL +LDLVAL + Sbjct: 180 AIVHPRHPDGHYPFDDLSGVGVAFKVAQAL---LTDGQPVTDKSDLPTEMLDLVALGEIA 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGG 309 D+V L NR V GL PGL AL++ + PI +E + + I P +NA G Sbjct: 237 DMVSLTDENRTLVSWGLKQINDSPRPGLSALLKNAGQASNQPIISETVSFKIAPRLNAVG 296 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G+++L LL+S D+ +A +++ +N R+ + + A+ L++ + Sbjct: 297 RLGDASLALDLLLSQDADTATDMASQIEAINAERQEIVEEVFGAAKQIALSE--EHINDQ 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+VV G WH GI+G++A+RL E +P +S G GSGRS FD+ ++ Sbjct: 355 VLVVAGQDWHQGILGIVASRLVELLHKPVIVLSLV-SGSYKGSGRSYGNFDLYTLMG--N 411 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + GGHA A GL + N RL D ++ +T ++ +L + Sbjct: 412 YRELYDTFGGHASALGLAISETNLARLRDQ----LADLPALELTQQAVDVNMMLTTQELT 467 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + D L P+G GN P+F N K++ + H+++T +Q ++A+ F Sbjct: 468 TTVYDALTLLEPFGTGNRQPIFEIQNPKIEKAITMGSTKQHIKLTLPNQ----IEAVGFN 523 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + K + L +NY+RG KR QL + D + E Sbjct: 524 HPDW----TGIVVKPKNVSFVATLGINYFRGMKRLQLLLTDVAIPE 565 >gi|303233632|ref|ZP_07320286.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna BVS033A4] gi|302495066|gb|EFL54818.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna BVS033A4] Length = 580 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 162/595 (27%), Positives = 277/595 (46%), Gaps = 38/595 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ N ++K+ I ++A++L+NRN++ + FLNP+ +P ++ Sbjct: 3 KWLINNRGNNYNEV---SKKYNIHPLIAKILLNRNIT--DFEKFLNPNAENSYHNPFLMK 57 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA I+ I ++EKI I GDYD DG +S ++ L + + + IP+R+ DGYG Sbjct: 58 DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYFTDKISYDIPNRMTDGYG 117 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191 + S+++K I + LIIT D G ++ + YA GI +IV DHHQ K A Sbjct: 118 ISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNA 177 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VNP + LC AGV + ++ I +LL VA+ TVC Sbjct: 178 DAVVNPQQQSCKYPFKSLCGAGVAYKLIQAINIKKG-----YGMLQCENLLQYVAMGTVC 232 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D+V L NR +V KGL N GLK LI I + + +LG++IGP INA GR+ Sbjct: 233 DIVDLKDENRYFVTKGLEEINNTDNYGLKWLINMTGIKNAVDVYSLGFIIGPCINAAGRL 292 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LG L ++ +E A L LN+ R+ + +A + + ++ ++ Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEII--ENTALKNDDIL 350 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430 + + H + G++A R+KEK+ +P+ ++ E+ GSGRSI +DI F Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTESENKNLLKGSGRSISEYDI--FQEFDDF 408 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGH MA GL++E+ K ++ + ID ++ Sbjct: 409 REMFVSFGGHPMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILIDSSFYIDKIDF 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546 LI+ + + P+G NP P+ + ++ +++ L+M ++++ + AI F Sbjct: 467 ELIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKL-LKNNKAIDAILFTD 525 Query: 547 -----RVYGTPLGEFLMQSR------GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 GE +++ + + + +N + K QL ++D Sbjct: 526 AIEKYNYLLGKFGENVLKELENSISCKAYIDILYYPEINDFNNVKNIQLNLIDLR 580 >gi|254523074|ref|ZP_05135129.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas sp. SKA14] gi|219720665|gb|EED39190.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas sp. SKA14] Length = 587 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 172/560 (30%), Positives = 276/560 (49%), Gaps = 24/560 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++AR+ +R P + L P +LT D A + +AI N ++I++ GD Sbjct: 36 PLLARLYASRGAGTPELAQ---PKLGNLHA-PELLTGIDDAVGLLAEAIANDKRILVVGD 91 Query: 101 YDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + +P+R+V GYG +PSL+++ L++TVD G Sbjct: 92 FDCDGATACAVGVRGLRMLGAQHVFHAVPNRMVHGYGLSPSLVDELAALQPDLLVTVDHG 151 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH + PA +V+PN D L GV+F VL Sbjct: 152 IACHAGVTAAKARGWQVLVTDHHLPGPQLPPADVIVDPNLDGDAFPSKSLAGVGVIFYVL 211 Query: 220 VLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + R +R+ DL +LLDLVA+ TV D+V L NRA V GL R QG Sbjct: 212 MALRRRMREAGVFADGKGPDLTTLLDLVAVGTVADLVALDPNNRALVSAGLRRLRAGQGC 271 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALIE + +TA ++G+ +GP +NA GR+ + LG LL+++D ++ +A Sbjct: 272 VGLRALIEASGRDAARLTATDIGFALGPRLNAAGRLEDMALGIALLLTEDPRQARDIAQT 331 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ +M + AE + D+ Q+ + WHPG+VGL+A+++K++ Sbjct: 332 LEQINSERRAVQQSMTDDAEQALTRVVLDMAGQRPVAACLFDADWHPGVVGLVASKMKDR 391 Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A + E G GS RSI G I ++ A G++ + GGHAMAAGL++ Sbjct: 392 LHRPVIAFAPAEPGADTLRGSARSIPGLHIRDALALVDARHPGLIERFGGHAMAAGLSLR 451 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F ++ DG L A ++ D L AGP+G G P P Sbjct: 452 LDHVDDFKAAFVAVVLEMLDPAALQQQVLSDGELAADELDHRHADALRLAGPWGQGFPEP 511 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F + ++ + RV+ HL++ T+ AI F + + + +H+ Sbjct: 512 LFDG-HFEVANWRVLKERHLKLELRLPGVPGTINAIHFGGWHG-------NAPARHVHLA 563 Query: 569 GHLCVNYWRGSKRCQLRVLD 588 L + +RG QL V Sbjct: 564 YRLACDDYRGGSAIQLIVEH 583 >gi|194365594|ref|YP_002028204.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas maltophilia R551-3] gi|194348398|gb|ACF51521.1| single-stranded-DNA-specific exonuclease RecJ [Stenotrophomonas maltophilia R551-3] Length = 585 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 175/564 (31%), Positives = 278/564 (49%), Gaps = 24/564 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++AR+ +R P + L P +LT + A +V+AI N ++I++ GD Sbjct: 34 PLLARLYASRGAGTPELAL---PKLGSLHA-PELLTGIEAAVGLLVEAIANDKRILVVGD 89 Query: 101 YDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L +P+R+V GYG +PSL+E+ L++TVD G Sbjct: 90 FDCDGATACAVGVRGLRMLGAQHVLHAVPNRMVHGYGLSPSLVEELAELQPDLLVTVDHG 149 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH + PA +V+PN D L GV+F VL Sbjct: 150 IACHAGVTAAKARGWQVLVTDHHLPGPQLPPADVIVDPNLDGDAFPSKSLAGVGVIFYVL 209 Query: 220 VLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + R +R+ DL +LLDLVA+ TV D+V L NRA V GL R QG Sbjct: 210 MALRRQMREAGVFADGKGPDLTTLLDLVAVGTVADLVALDPNNRALVSAGLRRLRAGQGC 269 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALIE + +TA ++G+ +GP +NA GR+ + LG LL+++D ++ +A Sbjct: 270 VGLRALIEASGRDAARLTATDIGFALGPRLNAAGRLEDMALGIALLLTEDPRQAREIAQT 329 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ +M + AE + D+ Q+ + WHPG+VGL+A+++K++ Sbjct: 330 LEQINSERRAVQQSMTDDAEQALTRVVLDMAGQRPVAACLFDADWHPGVVGLVASKMKDR 389 Query: 394 FGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A + E G GS RSI G I ++ A G++ + GGHAMAAGL++ Sbjct: 390 LHRPVIAFAPAEPGADTLRGSARSIPGLHIRDALALVDARHPGLIERFGGHAMAAGLSMR 449 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F ++ DG L A ++ D L AGP+G G P P Sbjct: 450 LDHLDDFKAAFVAVVLEMLDPAALQQQVLSDGELAADELDHRHADALRLAGPWGQGFPEP 509 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F + ++ + RV+ HL++ T+ AI F + + G+ +H+ Sbjct: 510 LFDG-HFEVANWRVLKERHLKLELRLPGVPGTINAIHFGGWHG-------NAPGRHVHLA 561 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V P Sbjct: 562 FRLACDDYRGGSAIQLIVEHCLPA 585 >gi|212696223|ref|ZP_03304351.1| hypothetical protein ANHYDRO_00759 [Anaerococcus hydrogenalis DSM 7454] gi|212676852|gb|EEB36459.1| hypothetical protein ANHYDRO_00759 [Anaerococcus hydrogenalis DSM 7454] Length = 576 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 170/590 (28%), Positives = 286/590 (48%), Gaps = 32/590 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLIL 75 +W + L + I + A +L NR++ F+NPS+ L DP +L Sbjct: 3 KWYIYNKKNNYLSNL---KNKNITKLEALILANRDIVEPNVVDSFINPSLEKLH-DPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +A I++ + N + I IFGDYD DG +S ++ L + + + IPDR++DGY Sbjct: 59 NDMKEAIDLIIETMENGQSIRIFGDYDQDGISSTMTLLDGLLYFYDDISYDIPDRVIDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH---------QVKS 186 G + ++++ I L+I+ D G T+ D ++ GI VI+ DHH +K Sbjct: 119 GISDRMIDRAIEAKVSLVISCDNGITAIDQVKKLKENGIRVIITDHHQVIKESNGEWIKQ 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ++NP RLD+ LC AGV F ++ +Y+ L D L LL+ VA Sbjct: 179 ILPDADCVINPKRLDNTYPFDDLCGAGVSFKLMQALYQRLEGD-----RDYLYGLLEYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCDVV L NR +V +GL +KALIE + + + A LG++IGP +N Sbjct: 234 MGTVCDVVSLTDENRIFVREGLKRINNTDKLAIKALIEENSWNKEVDAYTLGFVIGPCMN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L +L+ +D ++ A KL LN R+ + S LE++ + + Sbjct: 294 ATGRLSTAKLAIDMLMEEDIDKIHSYAKKLVSLNNERKDLTSIGLEKSMEIIKEK--KYY 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMV 425 + +I+V+ D I G++A R+KEKF +P+ ++ G GSGRSIE ++I + Sbjct: 352 KDDIIIVDVDNIEESICGIIAGRIKEKFNKPTIIMTGSSQEGILKGSGRSIEAYNIYTEI 411 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L GGH MA GL++++ + + + ID + Sbjct: 412 FE--IKDMLESFGGHPMACGLSIKQDRVDEFRKKLND--KSKLTKDDFEEIINIDAQIPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +++ + L P+G NP FA N ++++I ++ + L+MT +++ L+A Sbjct: 468 DKLSLEFAESLNRLEPFGKDNPKAKFADKNLEIKAINMIGKNNNTLKMTL-NKNGRDLEA 526 Query: 544 IAFRV---YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F Y L +F G ++ + VN +RG K Q++++D Sbjct: 527 IKFNAVKDYNYLLDKFNSHIVGNKIDAVFYPDVNEFRGQKNLQIKLIDIR 576 >gi|302380526|ref|ZP_07268991.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna ACS-171-V-Col3] gi|302311469|gb|EFK93485.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna ACS-171-V-Col3] Length = 580 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 163/595 (27%), Positives = 278/595 (46%), Gaps = 38/595 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ N ++K+ I ++A++L+NRN++ + FLNP+ +P ++ Sbjct: 3 KWLINNRGNNYNEV---SKKYNIHPLIAKILLNRNIT--DFEKFLNPNAENSYHNPFLMK 57 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA I+ I ++EKI I GDYD DG +S ++ L + + + IP+R+ DGYG Sbjct: 58 DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYFTDKISYDIPNRMTDGYG 117 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191 + S+++K I + LIIT D G ++ + YA GI +IV DHHQ K A Sbjct: 118 ISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNA 177 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VNP + LC AGV + ++ I + +LL VA+ TVC Sbjct: 178 DAVVNPQQQSCKYPFKSLCGAGVAYKLIQAINIKKG-----YGMLECENLLQYVAMGTVC 232 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D+V L NR +V KGL N GLK LI I + I +LG++IGP INA GR+ Sbjct: 233 DIVDLKDENRYFVTKGLEEINNTDNYGLKCLINMTGIKNSINVYSLGFIIGPCINAAGRL 292 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LG L ++ +E A L LN+ R+ + +A + + ++ ++ Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEII--ENTALKNDDIL 350 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430 + + H + G++A R+KEK+ +P+ ++ E+ GSGRSI +DI F Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTESENKNLLKGSGRSISEYDI--FEEFDEF 408 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGH MA GL++E+ K ++ + ID ++ Sbjct: 409 RDMFVSFGGHPMACGLSIEKNKLDEFRTKINK--NSKLTEDDFVKKILIDSSFYIDKIDF 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546 LI+ + + P+G NP P+ + ++ +++ L+M ++++ + AI F Sbjct: 467 ELIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKL-LKNNKAIDAILFTD 525 Query: 547 -----RVYGTPLGEFLMQSR------GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 GE +++ + + + +N + K QL ++D Sbjct: 526 AIEKYNYLLGKFGENVLKELENSISCKAYIDILYYPEINDFNNVKNIQLNLIDLR 580 >gi|134095410|ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas arsenicoxydans] gi|133739313|emb|CAL62362.1| Single-stranded-DNA-specific exonuclease RecJ [Herminiimonas arsenicoxydans] Length = 564 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 172/581 (29%), Positives = 267/581 (45%), Gaps = 26/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 A + Q + ++AR+ R + L + L+P P +L Sbjct: 3 RITTRPYPFRDAERMRQS-GVHPVMARLYTARGLLD---LKELTSELSALIPPPGLLH-I 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 D AA + AI + +K++I DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 DVAAVFLADAIADKKKLVIVADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLT 117 Query: 139 PSLME-KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++ + +I+TVD G S D + A +GIDV+V DHH A +VNP Sbjct: 118 PEIVALAVREKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNP 177 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255 N+ D +L GV+F VL+ + +R+ L +LLDLVAL TV DVV Sbjct: 178 NQPDCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVK 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + + G+ AL + +LG+ +GP +NA GR+ + Sbjct: 238 LDANNRILVAQGLKRMRAGRMHAGIAALFRAAGREARSASPFDLGFALGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG L +DD +A +LD +N+ RR +E+ M + A + D Q ++ I + Sbjct: 298 MSLGIECLTTDDEGRAWAIAQQLDEINRERRTIEADMQDTALLLLDK--FDPQDSTTISI 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RLK+KF RP+ + DG GSGRSI GF + + + Sbjct: 356 FDPSWHQGVIGIVASRLKDKFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAP 415 Query: 434 --LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + K GGHAMAAGLT+ + F+ + + V + DG L + Sbjct: 416 TLIDKFGGHAMAAGLTIRADSLDSFTQAFEAVGKDWLSRNQLERVIETDGPLEPAYFTTQ 475 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 I+++ +G G P+F ++ + R++ HL++T E +D + AI F Sbjct: 476 FIELMAE-QVWGQGFAPPLFCDE-FRVVNQRILKERHLKLTLE-KDGQQFDAIWFGHID- 531 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 S V L N + G R QL V A V Sbjct: 532 --------SLPATARVAYRLDANEFNGRTRVQLLVEHAEAV 564 >gi|260223260|emb|CBA33644.1| Single-stranded-DNA-specific exonuclease recJ [Curvibacter putative symbiont of Hydra magnipapillata] Length = 604 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 176/585 (30%), Positives = 269/585 (45%), Gaps = 29/585 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ ++ + ++AR+ R V+ KD L+ ++ L+P P L Sbjct: 37 KIVPRDIPPRAAWAL-EQAGLHPLLARLYAARGVTG---KDELDDALGKLLP-PQGLLGA 91 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 D+AA + AI +K+ + DYD DGA + A+ +R L + + +PDR+VDGYG Sbjct: 92 DRAAVLLADAIAQDKKLCVVADYDCDGATACAVAVRGLRLLGARHVDYLVPDRVVDGYGL 151 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + E+ GA ++ITVD G S D + A G+ V+V DHH SE A +VNP Sbjct: 152 TAPISERVKKSGADVLITVDNGIASVDGVARAKALGLQVLVTDHHLPGSELPDADVIVNP 211 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255 N+ + GV+F L+ + LR L +LL LVAL TV DVV Sbjct: 212 NQPGCTFESKSMAGVGVMFYTLLALRSELRNRVVFDAATQPKLDTLLPLVALGTVADVVK 271 Query: 256 LIGLNRAYVVKGLMVARRQGNPG--LKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R P I + T + G+ +GP INA GR+ + Sbjct: 272 LDANNRRLVAQGLKRVRALAMPAGLASLFIAAGRKAEVATTFDFGFALGPRINAAGRLSD 331 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIV 372 LG L++DD+ + LA LD +N+ RR +E M EQA + D+ + I Sbjct: 332 MTLGIECLLTDDAGRGDELAKMLDGINRERREIEGDMREQAMMIAESLFDEGDEPPPAIC 391 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V +H G+VG++A+R+K+K RP+F + ++ + GSGRSI GF + + Sbjct: 392 VFDPDFHEGVVGIVASRIKDKLHRPTFVFAASAAEGKEHELKGSGRSIPGFHLRDALDLV 451 Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 G++++ GGHAMAAG TV F + + A + A T + DG L A Sbjct: 452 AKRHPGVILRFGGHAMAAGCTVAEEFFDDFENGMNEVAQEWLDAATLTRRMETDGPLAAE 511 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 + L+D L +G G P F ++ S R+V HL + + Q E + I F Sbjct: 512 YRRVDLVDALHK-EVWGQGFAAPTF-SEEVEVVSQRLVGEKHLALKLKHQ-GEPVDGIWF 568 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 ++ + L + W G +R + V A Sbjct: 569 GHTE---------PLPPKVTLAFRLDADEWNGVRRVRFLVEGAQV 604 >gi|91776417|ref|YP_546173.1| exonuclease RecJ [Methylobacillus flagellatus KT] gi|91710404|gb|ABE50332.1| exonuclease RecJ [Methylobacillus flagellatus KT] Length = 564 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 179/573 (31%), Positives = 274/573 (47%), Gaps = 25/573 (4%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 A+ + +AR+L R + + S+ L+P P LT + A Sbjct: 8 NIDQEACQALV-DAGVRPTMARLLAARGIRN---IGQMEASLSRLIP-PERLTGNAEMAI 62 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 + AI ++I++ GDYD DGA + A+ ++ L + +P+R GYG P ++ Sbjct: 63 LLADAIAAGKRIIVVGDYDADGATATAVAVKGLLSMGAVVDFLVPNRFEYGYGLTPEIVA 122 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + LI+TVD G S D + A GI V+V DHH +E A +VNPN+ Sbjct: 123 LAVGYQPDLILTVDNGIASTDGVNAAQALGIPVLVTDHHLPGAETPRAACIVNPNQHGCD 182 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNR 261 HL GV+F VL+ + LR+ +L LLDLVAL TV D+V L NR Sbjct: 183 FPSKHLAGVGVIFYVLLALRAELRRRGAFAAGSEPNLTELLDLVALGTVADLVRLDDNNR 242 Query: 262 AYVVKGLMVARRQGN-PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL R PG+ AL E + ++LG+ IGP +NA GR+ + LG Sbjct: 243 ILVEQGLRRIRAGKCSPGVLALFEVAGRDHAKASPQDLGFSIGPRLNAAGRLDDMTLGIA 302 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 L++ D +A L LNQ RR +E+ M + A A + D + + D WH Sbjct: 303 CLLAPDMASARQMAQHLHALNQERRNIEADMQDDALAVLDE--IDAAGRYSLSLFRDGWH 360 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKG 437 G++G+LA+R+KE+F RP A + DG GSGRSI G + + E G+L+K Sbjct: 361 QGVIGILASRIKERFHRPVIAFASAGDGIIKGSGRSIAGLHLRDALDLLSKREPGLLLKF 420 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHAMAAGL++ +F R F++ ++ V ++DG L+ + + + LE Sbjct: 421 GGHAMAAGLSIREQDFPRFDAAFEQVVSGLLTQQQLEAVIEVDGSLSLEDAGLDMANALE 480 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 +G G P P+F ++ + RVV HL+++ E + + AI FR Sbjct: 481 R-QVWGQGFPPPLFLDE-FRVVNQRVVGERHLKLSLE-RAGQVFDAIFFRQ--------- 528 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 Q +R+H + VN +RG++ QL + Sbjct: 529 EQFLPERVHAVYQMQVNEFRGTQSVQLCLHHWQ 561 >gi|314933800|ref|ZP_07841165.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus caprae C87] gi|313653950|gb|EFS17707.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus caprae C87] Length = 757 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 163/591 (27%), Positives = 288/591 (48%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72 S + W E I + +K + IV +VL ++N V + D L + L DP Sbjct: 4 SRYHWDLAQPTEYITD--DLAKKLNLSPIVKKVLESKNLVQENNILDVLEDKV--LDHDP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 WLLSDMQKAIDRINLAIDKNERILVYGDYDADGVTSTTILVNTLQQLGAQVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN +EG LIITVD G +D ++ + G+DVIV DHH++ A Sbjct: 120 EGYGPNELAFRNAYDEGISLIITVDNGIQGHDEIKMVQDLGVDVIVTDHHEIGRTLPEAL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D +LC AGV + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPDFDYPFKYLCGAGVAYKLSQALLSHPPQ-----------QFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR+ V +GL + Q + A++++ + I E +G++IGP +N GR+ Sbjct: 229 LVSLTDENRSIVKRGLKILNDQTPVSINAILKQAGYNDQINEETIGFIIGPRLNVVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+ D+ +E E LA +++ NQ R+ + + + E+A + Q Q ++ Sbjct: 289 DASLAAELLMVDEFEEAEFLAEQVEHFNQERKDIVAEITEEALSLAEEQV--QQGNLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ + E GS RSIE + + Sbjct: 347 LAKENWHEGVLGIVASKIVETYALPTLVLNIDLEQNHAKGSARSIEQVSM--FEILNAHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T++ N L ++ + + P +D +LN S + + Sbjct: 405 DLITKFGGHHMAAGMTMDIENIDELRKGLNEWMKQLSESTSLAPRKHVDVLLNESEITVK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I ++ P+G +P+F + ++SI+ + HL++ L A+ + Y Sbjct: 465 NIQDIQKLRPFGTDFNSPIFEVNDLNVKSIKAIGQEGKHLKVAL---GENQLAALYW-SY 520 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G E M G+ +++ G+L +N W G++ QL + D + + Sbjct: 521 GHLAKEIEM---GQPLNLIGNLQINEWNGNQSPQLIIQDIATETIQILDYR 568 >gi|319947208|ref|ZP_08021442.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus australis ATCC 700641] gi|319747256|gb|EFV99515.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus australis ATCC 700641] Length = 746 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 172/593 (29%), Positives = 280/593 (47%), Gaps = 34/593 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + LA +K + A++L R + + A FL P + L DP Sbjct: 12 SKYEWQFAAPFSD-DTFLAQAKKRGLEASAAKLLGERGIQTEEALDRFLEPRLEDLH-DP 69 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI + E+I+++GDYD DG + ++M L +Y+P+R Sbjct: 70 YLLHDMDKAVDRIRQAIEDYEQILVYGDYDADGMTAASIMKETLEQMGAEVAVYLPNRFT 129 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A+ A + G+DVIV DHH + A Sbjct: 130 DGYGPNASVYKYFIEQQGISLIITVDNGVAGHEAIDLAQSMGVDVIVTDHHAMPEVLPDA 189 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+++P + HL GV F + + + L LDLVA+ T+ Sbjct: 190 YAVIHPEHPNADYPFKHLAGCGVAFKLATALLEEVP-----------LDFLDLVAIGTIA 238 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGR 310 D+V L NR V GL V R+ GL+ +++ +I + E +G+ I P +NA GR Sbjct: 239 DMVSLTDENRILVKYGLGVLRQTQRIGLQEMLKLASIAPQDVNEETVGFQIAPRLNALGR 298 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +E +A+ + N+ R+ + ++ ++A+A V V Sbjct: 299 LDDPNPAVELLTGFDDEEALEIALMIQAKNEERKEIVQSIYDEAKAMV------DPSLPV 352 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 ++ + W+PG++G++A RL E+ +P ++ + GK GS RS E I + Sbjct: 353 QILAKEGWNPGVLGIVAGRLLEELHQPIIVLT-IDQGKAKGSARSPESVHI--FEALDPH 409 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + + GGHA AAG+T+E L + F + L +D L+ + + Sbjct: 410 RDLFIAFGGHAGAAGMTLEVDKLPHLTEIFSDYIREKGIDLTAKSTLFVDEELDLEELTL 469 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRV 548 + + P+G + PVF + +++S R + +HL++ + D +AF Sbjct: 470 DTLKSFDRLAPFGMDHKKPVFYIRDFQVESSRNMGAGNSHLKLKIQKGD-ARFDVVAFGQ 528 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 L S+ K + + L VN W G QL V+DA VEG + + Sbjct: 529 GHLE----LEYSQAKNLELVVSLSVNQWNGQTTLQLMVVDAR-VEGVQLYNIR 576 >gi|253583591|ref|ZP_04860789.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium varium ATCC 27725] gi|251834163|gb|EES62726.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium varium ATCC 27725] Length = 860 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 159/581 (27%), Positives = 291/581 (50%), Gaps = 26/581 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RWV + + ++ + + +L NRN+ + K+FL+ ++ + DP L Sbjct: 5 RWVYK---DNPLKNNKDIKELNLDKDILNLLYNRNIIEKEEIKNFLDVDVKN-IADPFSL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA R+VQA N+E + I+GDYDVDG SV+L LS ++ YIP R +GY Sbjct: 61 KDVDKAVNRLVQAKENNETVWIYGDYDVDGITSVSLCFLALSELGIDVKYYIPLR-DEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N + NEG L+ITVDCG +S++ + +A++ GID+IV DHH++ + A A++ Sbjct: 120 GLNMEAINYIKNEGGTLVITVDCGISSHEEISHASSLGIDMIVTDHHEINNGNPKALAVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP R D+ +L G F+++ +++ L ++ ++ LD+VA+ TV D+VP Sbjct: 180 NPKREDNDYSFKYLAGVGTAFMMIAALFKTLDKE------EEVYKYLDIVAIGTVADIVP 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI---TAENLGYMIGPSINAGGRIG 312 L+ NR +V +GL RR GL LI+++ I ++G++I P NA GR+ Sbjct: 234 LLKENRIFVKEGLEHLRRSRWLGLNMLIKKIFEDYDIRKFNTYDIGFIIAPIFNAVGRLE 293 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I D + L N R+ ++ + E+A K+ + + + + SV++ Sbjct: 294 DAKKAVELFIEKDHRVCSAAIKDLLEKNSERKEIQEEIFEKAIEKI--ENEKLYENSVLI 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +++ +P+ + ++G S RSIEGF+I + ++ Sbjct: 352 VGEKGFHHGVIGIVASKVLDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAIN--NFS 409 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L+K GGH+ AAG +++ N +A + K+D L ++ Sbjct: 410 DLLIKYGGHSGAAGFSIKIENIEEFSKKLNDYAKTAMEDSTLIKPIKVDRPLPFYKISYD 469 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 +D + P+G GNP+P+F+ N + +R++ H+ M +E + F Sbjct: 470 FLDKISLLEPFGFGNPSPLFSLNNCQFDGLRLIGKDKKHIMMNVIKNGNEIRNCVWFNSD 529 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + + + L + ++ + ++ + D Sbjct: 530 DI----FENLVNLRNIDIAFKLKLETYKDRYQYKMYIEDIR 566 >gi|165975918|ref|YP_001651511.1| single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876019|gb|ABY69067.1| single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 512 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 168/515 (32%), Positives = 255/515 (49%), Gaps = 15/515 (2%) Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143 ++ A +I+I GD+D DGA S AL + L N + IPDR GYG + ++ E Sbjct: 1 MIDAFKQQSRIVIVGDFDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAE 60 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + +GA L+ITVD G +S++ + I V+V DHH A A+VNPN D Sbjct: 61 MVLAKGADLVITVDNGISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCS 120 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRA 262 L GV F V++ + +R+ +L LLDLVAL TV DVVPL NR Sbjct: 121 FPSKSLAGVGVAFYVMLALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRI 180 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R G++AL E S + A +LG+ I +NA GR+ +LG L Sbjct: 181 LVHQGLTRIRSGHCRAGIRALAEVSKRELSSLQAGDLGFAIASRLNAAGRLENMSLGVEL 240 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRW 378 LI+++ + LA +LD LNQ R+ E M +A A +Q+ I + W Sbjct: 241 LIAENMEIARQLAFELDSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADW 300 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGIL 434 H G++G+LA+R+K++F RP A + E + GS RSI G + ++ ++ Sbjct: 301 HQGVIGILASRIKDQFHRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLI 360 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 VK GGHAMAAGLT+ + NF + F + I+ V DG L+++ +NI + + Sbjct: 361 VKFGGHAMAAGLTIHQNNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAE 420 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 +L+ AGP+G P P+F K+ R++ HL++ E AI F Sbjct: 421 LLQKAGPWGQSFPEPLFEGE-FKILQQRILGGKHLKLMVEQPFGGLFDAIWFNADLRIFP 479 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + K + L +N ++G+K QLR+ + Sbjct: 480 DLSI----KSARLIYKLDINEFKGNKNLQLRIENI 510 >gi|15924626|ref|NP_372160.1| single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus Mu50] gi|15927216|ref|NP_374749.1| hypothetical protein SA1462 [Staphylococcus aureus subsp. aureus N315] gi|148268116|ref|YP_001247059.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus JH9] gi|150394184|ref|YP_001316859.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus JH1] gi|156979954|ref|YP_001442213.1| hypothetical protein SAHV_1623 [Staphylococcus aureus subsp. aureus Mu3] gi|255006421|ref|ZP_05145022.2| hypothetical protein SauraM_08130 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793709|ref|ZP_05642688.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus A9781] gi|258410992|ref|ZP_05681272.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus A9763] gi|258420207|ref|ZP_05683162.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A9719] gi|258438209|ref|ZP_05689493.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A9299] gi|258443672|ref|ZP_05692011.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A8115] gi|258446879|ref|ZP_05695033.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A6300] gi|269203261|ref|YP_003282530.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ED98] gi|282893140|ref|ZP_06301374.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A8117] gi|282928271|ref|ZP_06335876.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A10102] gi|295406757|ref|ZP_06816562.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A8819] gi|296275921|ref|ZP_06858428.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus MR1] gi|297245660|ref|ZP_06929525.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A8796] gi|13701434|dbj|BAB42728.1| SA1462 [Staphylococcus aureus subsp. aureus N315] gi|14247408|dbj|BAB57798.1| similar to single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus Mu50] gi|147741185|gb|ABQ49483.1| exonuclease RecJ [Staphylococcus aureus subsp. aureus JH9] gi|149946636|gb|ABR52572.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus JH1] gi|156722089|dbj|BAF78506.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787681|gb|EEV26021.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus A9781] gi|257840142|gb|EEV64606.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus aureus A9763] gi|257843918|gb|EEV68312.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A9719] gi|257848253|gb|EEV72244.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A9299] gi|257851078|gb|EEV75021.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A8115] gi|257854454|gb|EEV77403.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A6300] gi|262075551|gb|ACY11524.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ED98] gi|282590078|gb|EFB95160.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A10102] gi|282764458|gb|EFC04584.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A8117] gi|285817318|gb|ADC37805.1| Single-stranded-DNA-specific exonuclease recJ [Staphylococcus aureus 04-02981] gi|294968504|gb|EFG44528.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A8819] gi|297177311|gb|EFH36563.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A8796] gi|312830022|emb|CBX34864.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129920|gb|EFT85910.1| hypothetical protein CGSSa03_02513 [Staphylococcus aureus subsp. aureus CGS03] gi|329727260|gb|EGG63716.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus 21172] Length = 757 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 160/588 (27%), Positives = 284/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|323142302|ref|ZP_08077134.1| single-stranded-DNA-specific exonuclease RecJ [Phascolarctobacterium sp. YIT 12067] gi|322413186|gb|EFY04073.1| single-stranded-DNA-specific exonuclease RecJ [Phascolarctobacterium sp. YIT 12067] Length = 784 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 163/575 (28%), Positives = 268/575 (46%), Gaps = 25/575 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W +A + ++ I +V +L+ R + +DFL S DP + Sbjct: 6 RIWDIKEYNS--QKADYLAEELNISPMVTGILLERGLQDAASMRDFLYGSAAPFH-DPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D ++ RI +A+ E+I ++GDYDVDG ++ +L+ +L YIP R +G Sbjct: 63 LKDMQRSVERIERALAAGEQITVYGDYDVDGISASSLLYLYLKQRGGRVATYIPQRKSEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++ G L+ITVDCG + + A + +D+I+ DHH V PAYA+ Sbjct: 123 YGLNDEALKNIAENGTTLVITVDCGISGLHEVANA-PKSLDIIITDHHTVPEVLPPAYAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +N + D HL G+ F + + + R+ ++P L +L AL TV D+V Sbjct: 182 INAKQRDCGYPFKHLSGVGIAFKLCQALEQ--REPGRLPKW---QELTELAALGTVADIV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 PLIG NR V +GL GL+ALI+ A + +G+ + P +NA GR+ Sbjct: 237 PLIGENRELVRRGLKAMETTKLVGLRALIKASGCPETGIASDNIGFGLAPRLNAVGRLEH 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L LL++DDS + E +A +L+ N R+ + ++E+AEA++ + + IV+ Sbjct: 297 AQLAVELLVTDDSVKAEKIAAELNRENTLRQEISRQIMEEAEAQLAQEKH---IDTAIVL 353 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+RL +K+ P+ IS +G GS RSI ++ + + E + Sbjct: 354 ASEGWHQGVIGIVASRLVDKYHLPTILIS-LNNGVAKGSCRSIPALNLYEAIDA--ERDL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN-ASAVNIAL 492 L + GGH AAGLT+ F ++ + P ID VL+ +S ++I Sbjct: 411 LTQYGGHHQAAGLTLPAELLPEFKRRFHEYVAQKLSPEDYLPHQAIDCVLSGSSEISIRD 470 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 ++ L P G N PVFAF L + R + HLQ + + + + + Sbjct: 471 LEQLALLEPCGCENQAPVFAFRQALLHNQRAMGKERNHLQFVL-DKGYNSYRGLMWNNAD 529 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 V +N W QL+ Sbjct: 530 L----LPYMFENMVADVAFQPKINVWNNETSVQLQ 560 >gi|227878806|ref|ZP_03996713.1| recombination protein J [Lactobacillus crispatus JV-V01] gi|256849926|ref|ZP_05555357.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus MV-1A-US] gi|262046827|ref|ZP_06019787.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus MV-3A-US] gi|227861554|gb|EEJ69166.1| recombination protein J [Lactobacillus crispatus JV-V01] gi|256713415|gb|EEU28405.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus MV-1A-US] gi|260572809|gb|EEX29369.1| single-stranded-DNA-specific exonuclease [Lactobacillus crispatus MV-3A-US] Length = 757 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 156/571 (27%), Positives = 267/571 (46%), Gaps = 32/571 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W E A + +K+ + I A++ R ++ D DF + + DP ++ Sbjct: 2 KWQERTADE---LAPDLIEKYQLGPIAAKLFALRGINTDEKLDFWFNATEENLADPALMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI + EKI I+GDYD DG + +M LS + + +IP+R DGYG Sbjct: 59 DMDKAINRINQAIDSGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPNRFNDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G +LIITVD G T + ++YA +DVI+ DHH + ++ AYA V+ Sbjct: 119 PNMDRYQDIVADGTRLIITVDNGVTGVEEVKYAQEHNVDVIITDHHTFQEKKPAAYATVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRGLMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ I ++G+ I P +NA GR+ +N Sbjct: 228 TGEGHIIVKRGLEMLNQTDRPGLRALIKNAGLTLGSINETDVGFNIAPRLNAVGRLDNAN 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD E + +A K++ LN R+ + + + ++ + Q+ + +V+ Sbjct: 288 LAVELLLSDDDLEAQKIADKIEELNNKRKELTTEVYDKCMTLIHKNSW--QKQNTLVLYD 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ + G+ GSGRS GF++ ++ +++ L Sbjct: 346 PEFHEGVLGLVANKIVEKTHKPTIVLTKNDAGEVKGSGRSFAGFNLFDALNP-IKDQYLT 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL++E L + F+ H D L + + Sbjct: 405 KFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKK----YDMELPMQGLTPQTLAQ 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+ G+ P+F+ N + + H++ T + L I F Sbjct: 461 INQVGPFWTGDTQPIFSISNPTITHFFKMGKDKNHVKFTVAKKGGN-LSVIGFNKG---- 515 Query: 554 GEFLMQSRGKRMHVTG-HLCVNYWRGSKRCQ 583 FL + + L +N +R Q Sbjct: 516 --FLNNNLLPFISQIFVQLSLNTYRNQVSLQ 544 >gi|225027424|ref|ZP_03716616.1| hypothetical protein EUBHAL_01680 [Eubacterium hallii DSM 3353] gi|224955251|gb|EEG36460.1| hypothetical protein EUBHAL_01680 [Eubacterium hallii DSM 3353] Length = 591 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 167/601 (27%), Positives = 281/601 (46%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 +W + N+ I I + AR++ NR+++ + +L S+ L D +L Sbjct: 3 KWFIASKRADFNKIGEI---FHISPVTARLMRNRSLTTVREMQRYLYGSLSDLY-DSHLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DK A I + I +KI I DYDVDG +S ++ + L C + + IPDR+ DGY Sbjct: 59 KDADKGAEIIKEKIETGKKIRIISDYDVDGVSSNYILYQGLKRCGADVDYKIPDRVEDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N L+EK +G IIT D G + + + Y + G+ +IV DHH + + Sbjct: 119 GINEHLIEKAAEDGIDTIITCDNGIAAAEQIAYGNSLGLTLIVTDHHDIPFQRQEDGSIS 178 Query: 192 ------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A++NP + D ++C A VV+ + ++Y + D + L++ Sbjct: 179 YNLPSAAAVINPKQKDCPYPFENICGAVVVYKFIQVLYDLFGIDRRESEV-----FLEIA 233 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATVCDV+PL NR V +GL + GL+ALIE + I++ + G+++GP Sbjct: 234 AMATVCDVMPLCDENRIIVKEGLRRIQHTNITGLQALIEANHLEEKKISSYHFGFILGPC 293 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + LL+ +D + A L LN R+ M + ++ A+ + + Sbjct: 294 INASGRLTSAKDALELLLCEDKELCRQKAEALTQLNAERKEMTANGVKAAKEYL--ESTG 351 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 V+VV H I G++A R+KE + +P F I+ ++G GSGRSIE + + K Sbjct: 352 HANDKVLVVYLPNCHESIAGIIAGRMKEHYHKPVFVITRTKEGL-KGSGRSIEAYHMYKE 410 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 ++ + K GGH MAAG +++ + A+ + ID L Sbjct: 411 MNK--IKECFDKFGGHPMAAGFSMQEDRLEEFREKLN--ANATLTEDDFAEKVHIDVALP 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 S ++ +LI+ E P+G N P+FA + ++ +RV+ L++ + ++ Sbjct: 467 ISYLSESLINEFELLEPFGNENTKPLFAQKDLYIKGMRVLGTTGRCLKLFLSDANGTSID 526 Query: 543 AIAFRVYGTPLGEFLM---QSRGKRM----------HVTGHLCVNYWRGSKRCQLRVLDA 589 A+ F L E + + +R+ VT + VN WRG K Q+ + + Sbjct: 527 AMYFGESDVFLEELISFCGKEEAQRIQKGLSHHIWMDVTYYPQVNEWRGQKNIQIVIQNY 586 Query: 590 S 590 Sbjct: 587 R 587 >gi|317131340|ref|YP_004090654.1| single-stranded-DNA-specific exonuclease RecJ [Ethanoligenens harbinense YUAN-3] gi|315469319|gb|ADU25923.1| single-stranded-DNA-specific exonuclease RecJ [Ethanoligenens harbinense YUAN-3] Length = 679 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 180/578 (31%), Positives = 278/578 (48%), Gaps = 27/578 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ +E R L + ++AR+L R D A+ FL+ + DPL+ Sbjct: 2 REWIIGAPEEQAARTL---RDAGASPVLARLLALRGFADADGAQAFLDC--AGTLHDPLL 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +AA R+ QAI E I ++GDYDVDG + AL+ +L +A Y+P+R +G Sbjct: 57 LADMPRAAERVRQAIEKKETIAVYGDYDVDGVTAAALLTGYLREQGADAFAYLPERESEG 116 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + GA L ITVD G ++ + + A G+D+IV DHH+ +E A+A+ Sbjct: 117 YGLNSPALARLRACGAALCITVDTGISALEEAESAREWGLDLIVTDHHEPHAELPGAFAV 176 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P R D L GV F + + + DL+ L TV DVV Sbjct: 177 VDPKRPDCPYPFKGLAGVGVAFKLACAV------EGPGSETALFARYGDLLCLGTVADVV 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 PL+ NR V +GL + + G PGL AL+E+ A L + + P INA GR+ Sbjct: 231 PLLDENRVLVKRGLDMFAQAGRPGLAALLEQAGAGGKAPNASLLAFTVAPRINAAGRMDS 290 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ + LA L N R+ E+ +LE+ EA + + Q V++V Sbjct: 291 ALPALELLLTASPARAKTLAEHLCACNDARKREEARILEETEAVIHADG--LLQNKVLIV 348 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W G++G++AARL E+F RP+ +SF EDG G S RS EGF + K +S + Sbjct: 349 AGEGWADGVIGIVAARLTERFERPAMVLSFGEDGVGRASCRSFEGFALHKALSAC--APL 406 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGHA+AAG ++ R N + + FA + PV ++D L+A + +A Sbjct: 407 LEKYGGHALAAGFSIRRENLPAFRETVEAFAADC----DILPVLRLDCALDAEDLTLAAA 462 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTP 552 + P GA NP P+F + + +R + HL++ A+ F Sbjct: 463 EDCARLEPCGAENPAPLFYLEDVLVAEVRPLSGGKHLRLACRM-GGRPFDALVFGA--ER 519 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +G ++G + + L VN W+G + + V Sbjct: 520 MGRTF--AKGDVLDLAAELSVNEWQGRRSLSVLVRAVR 555 >gi|282916904|ref|ZP_06324662.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus D139] gi|283770710|ref|ZP_06343602.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus H19] gi|282319391|gb|EFB49743.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus D139] gi|283460857|gb|EFC07947.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus H19] Length = 757 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 159/589 (26%), Positives = 286/589 (48%), Gaps = 30/589 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 ++W E I+ +T K + IV ++L ++++ + + ++ + + D L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQTIESIISDT--DINHDALQ 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L+D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +G Sbjct: 62 LSDMTKAIDRIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+ Sbjct: 122 YGPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P LC AGV + + + + LVA+ T+ D+V Sbjct: 182 VHPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLV 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ ++ Sbjct: 231 SLTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +L LL++DD +E LA +++ N+ R+ + + + E+A A T+ + +++ Sbjct: 291 SLACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLA 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + + Sbjct: 349 KENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQEL 406 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 407 IAKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNI 466 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGT 551 + P+G P+F + + S++ + HL++T + L F G Sbjct: 467 RDMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGH 522 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 523 LEPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|206891034|ref|YP_002248126.1| single-stranded-DNA-specific exonuclease RecJ [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742972|gb|ACI22029.1| single-stranded-DNA-specific exonuclease RecJ [Thermodesulfovibrio yellowstonii DSM 11347] Length = 557 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 178/579 (30%), Positives = 281/579 (48%), Gaps = 37/579 (6%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 WV + + I++ I A+VL+++ + ID FLNP+I + DP +T Sbjct: 6 WVVVKTNQEY--LQYISKSLNITIPTAQVLLSKGLKDIDEIYSFLNPNIDNI--DPFEIT 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +A + I AI + KI+I GDYD DG S A++ L +IP RI GYG Sbjct: 62 GIYEATKIIDAAIKSETKILINGDYDADGLTSTAILYDILIKKGAKVFYHIPHRIQHGYG 121 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV----KSEEIPAY 192 + +E+ GA+LIITVDCG ++A++YA +GI VI+ DHH+ + P Sbjct: 122 LSIRSIEEAKKIGAKLIITVDCGIRDFEAVEYANKEGIGVIITDHHEPLRLNEEVVTPHA 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 V ++D +L GV F++ + + R + L LDLV L T D Sbjct: 182 LAVINPKIDGKPYYNYLAGVGVAFMLAMALSRE-----------EALGYLDLVTLGTYAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +VPLI NR + G + +K L I+S I +L + + P INA GRI Sbjct: 231 MVPLIHANRTLIKHGWEMIDSPVRNSIKMLKNIAGINSNSIRGFHLSFCLIPRINAPGRI 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ R LIS+D EL+ L+ L+ +N R+ E ++ + E K+ + DD VI Sbjct: 291 DQAGDVVRFLISEDESELDSLSKWLNQINSMRQKTEEKIMAEVEEKLSKEFDDE---PVI 347 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ GD WHPG+VG +A++L +KF RP+F +S + + K GS RS G D+ + ++ + Sbjct: 348 VLWGD-WHPGVVGTVASKLMDKFNRPAFILSIQGE-KAKGSARSPAGIDLQEFLNA--SK 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L++ GGH AAG+T+ + N + A IV + +D +N + V Sbjct: 404 DLLIRFGGHKQAAGMTLLKDNLYAFKEKLCLIAQEIVRDD--KNILLLDAAVNLNEVTEK 461 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 + + + P+G GN P+F + ++R V HL+M Q+ T+ AI F + Sbjct: 462 VAEEISLLEPFGEGNREPLFGAKELTVLNLRKVGNNHLKMFLR-QNGNTIGAIGFDMGDA 520 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + E G + +N W G K QL++ Sbjct: 521 QILE------GSLIDAAFTPSINEWEGMKSLQLQLKALR 553 >gi|325842226|ref|ZP_08167643.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter sp. HGF1] gi|325489693|gb|EGC92052.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter sp. HGF1] Length = 741 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 168/591 (28%), Positives = 275/591 (46%), Gaps = 34/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72 S F W L + + D V ++++NR+++ + FL+ + DP Sbjct: 4 SNFLWQWSES----IGELELGFNSNLRDEVKQLILNRHLASEKSIDTFLSG--EGPLYDP 57 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + +D K+ RI +AI N E I+I+GDYD DG +++MR L + YIP+R Sbjct: 58 FLFSDMKKSVDRINKAIENQEPILIYGDYDADGVTGTSILMRALRGLGAIVDYYIPNRFY 117 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + I++G +LIITVD G + G+D+I+ DHHQ E P Sbjct: 118 EGYGPNEDAFMQAISDGYKLIITVDNGISGLLEADILPPYGVDLIITDHHQ-PKECHPNA 176 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 + LD L AGV + + + + AL T+ D Sbjct: 177 FSIIHPELDSSYPFYQLSGAGVALKLAQALI----------GDGLSEEYFAIAALGTIGD 226 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311 VVPLI NR V +GL RR GL AL+ I E N+G+ I P +NA GR+ Sbjct: 227 VVPLIDENRYIVKRGLEAIRRTELCGLNALMNEAKIDKSEVDEVNVGFEICPRLNAPGRM 286 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 E+ L LLISDD E ++A +++ N R+ + +L+QA + + ++ V+ Sbjct: 287 DEAALAVELLISDDEMEAALIATQIESFNLERQKVTQKVLDQASTLMTPK--QLEDKKVV 344 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 ++ WH GI+G++A RL + + + F ++ + DG GS R++EG+ + E Sbjct: 345 LLYQPNWHEGILGIVAGRLSKLWQKAVFVLTDDHDGFVKGSARAVEGYHL--FDLLNQNE 402 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ + GGHA+AAG+T+ N L D + + P+ ++D L+ +++ Sbjct: 403 DLIERFGGHALAAGITLAPENIQPLEDKLN----ADLRGIKIQPMQRVDLNLSLEKIDLE 458 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549 L++ L PYG GN PV K+++I+ + HL+ T + + L AIAF Sbjct: 459 LVEDLAVLAPYGEGNRPPVIGIEQVKVKNIKAIGNKLQHLKFTIYDEAHQ-LDAIAFNKA 517 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + G + +N W G++ Q V+D E + Sbjct: 518 DL----MIYLTPDTLFDFIGEIKINEWNGNRTVQFHVMDVKCDEFQLLDLR 564 >gi|225410141|ref|ZP_03761330.1| hypothetical protein CLOSTASPAR_05362 [Clostridium asparagiforme DSM 15981] gi|225042330|gb|EEG52576.1| hypothetical protein CLOSTASPAR_05362 [Clostridium asparagiforme DSM 15981] Length = 578 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 169/588 (28%), Positives = 277/588 (47%), Gaps = 34/588 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLIL 75 +W+ + N I + I + AR++ NR+V + A +L S+ M DP +L Sbjct: 9 KWMLHAKKADFN---EIGMRFHISPVTARIIRNRDVVGEEAIGRYLFGSVEQ-MYDPRLL 64 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D ++A + I +I I GDYD+DG S ++ R L + IPDR+ DGY Sbjct: 65 PDMERAVEILEGKIAAGARIRIVGDYDIDGVCSTYILYRGLKRLGAAVDYEIPDRVKDGY 124 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N S++ +G I+T D G + + A G+ ++ DHH ++ Sbjct: 125 GINESIIRAASADGVDTILTCDNGIAAVSQFELAKELGMTAVITDHHDIQTVEDGEGGER 184 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA ALVNP R D G +C A V + ++ ++Y + L +L+ Sbjct: 185 DLLPPADALVNPKRRDSRYPNGAICGAMVAYKLIQVMYERAGVPG-----DEWLEMLEFA 239 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPS 304 A+ATV DV+ L NR V +GL N G++ LIE+ N+ I+A ++G++IGP Sbjct: 240 AIATVGDVMKLQDENRIVVKEGLKRLGISKNLGIRKLIEKNNLDPKAISAYHIGFVIGPC 299 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NAGGR+ + L LL+ +D E + LA++L LN R+ M ++QA V + Sbjct: 300 LNAGGRLQTAKLALSLLLCEDEGEADRLALELKELNDQRKDMTQQGVDQAVELVEERYL- 358 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 V+VV H + G++A R++E++ +P+ ++ EDG GSGRSIE + + Sbjct: 359 --NDKVLVVFLPDCHESLAGIVAGRIRERYCKPTLILTRSEDG-AKGSGRSIEAYHM--F 413 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + +L K GGH MAAG ++ + A + P ID + Sbjct: 414 NALVEVKDLLTKFGGHPMAAGFSLPEDKVDEFRRRLNENAK--LTEEDFIPKIWIDVAMP 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 +N +LI+ LE P+G GN P FA ++S RV+ +++ ++ + Sbjct: 472 FEYINESLIEELELLEPFGQGNEKPQFAQKGMVIRSSRVMGKNRNVVKLNLVNERGRAMD 531 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 A+ F + E R + M V + VN + G++ QL V + Sbjct: 532 AVVFTDGDEFVAEM---GRSRMMDVIYYPSVNEYNGNRTLQLVVKNWK 576 >gi|325922461|ref|ZP_08184228.1| exonuclease RecJ [Xanthomonas gardneri ATCC 19865] gi|325547081|gb|EGD18168.1| exonuclease RecJ [Xanthomonas gardneri ATCC 19865] Length = 579 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 174/565 (30%), Positives = 276/565 (48%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ +P + L+ P +L + D AA + AI + +I++ GD Sbjct: 24 PLLRRIYAARGVTDTQGA---HPRLGQLL-SPELLHNSDVAAELLADAIAHQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ L++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDLLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLANDSFPSKSLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + +LR DL LLDLVA+ TV D+VPL NRA V GL R +G Sbjct: 200 LALRSVLRARGAFADRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ + P +NA GR+ + LG LL+S+D +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALAPRLNAAGRLEDMALGIELLLSEDWSRAREIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGELPIAACLFDAEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSLLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSMD 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F+ ++V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFRSQVQSMVDASLLHAELHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + G+ + + Sbjct: 500 LFDGR-FEVLQCRVLKERHLKLTLRCAGRAEPLNAIHFNGWRG-------SEPGRMVRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V P Sbjct: 552 YRLVSDDYRGGTAVQLIVEHCEPAT 576 >gi|40062787|gb|AAR37681.1| single-stranded-DNA-specific exonuclease RecJ [uncultured marine bacterium 439] Length = 564 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 169/562 (30%), Positives = 262/562 (46%), Gaps = 31/562 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM-PDPLILTDCDKAARRIVQAIYNSEKIM 96 IP + + R+V+ L S+ L+ P+ L D A + +AI + +I+ Sbjct: 17 DIPVFLKNIYAARSVTESQ----LTLSLPGLLKPNFDQL---DVALNLLERAITENRRIL 69 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLM-EKFINEGAQLII 154 I GD+D DGA + A+ ++ L + +P+R GYG +P ++ E + +II Sbjct: 70 IVGDFDADGATASAVAIKALRMMGTKFVDFLVPNRFEHGYGLSPEIVNEAKKEKDPDIII 129 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S + A + GIDVI+ DHH + A A++NPN +L GV Sbjct: 130 TVDNGISSIEGTSLARSLGIDVIITDHHLPPTILPDANAIINPNLEGCKFPSKNLAGVGV 189 Query: 215 VFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 F + + L N N DL +LDLVAL TV DVV L NR V +GL Sbjct: 190 CFYLFSALKTHLEGLNYFEKNKISVPDLREILDLVALGTVADVVKLDQNNRILVSEGLKR 249 Query: 271 ARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 R++ L + A +LG+ + P INA GR+ + + G L+S+D + Sbjct: 250 IRQKRCSKGILAILELTKRPVESLQASDLGFSVAPRINAAGRLSDISQGISCLLSEDIND 309 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 A L+ N+ RR +S M ++A A V Q D + I + + WH GIVG++A Sbjct: 310 ARRYAANLEKFNKERREEQSRMQDEALAIVAEQSID-ESPFAITLFDESWHEGIVGIVAG 368 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGL 446 +LKE + P + GS RSI I ++ E + K GGHAMAAGL Sbjct: 369 KLKEDYQCPCVVFAKSGK-LLKGSIRSISDVHIKDLLDLIDRENPTLIGKFGGHAMAAGL 427 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T+ NF + F + + + DG L+AS + + ++L A P+G G Sbjct: 428 TINPENFEEFKEAFTRAITDHLEGKKPIIELLTDGKLDASEMTLNNAELLRQASPWGQGF 487 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL-QAIAFRVYGTPLGEFLMQSRGKRM 565 P+F + +L R+V HL+ T + D+ ++ + IAF F + K++ Sbjct: 488 EEPIFYG-DFELLEQRIVGEKHLKCTLKLVDNSSIFEGIAF---------FQEKLESKQV 537 Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587 V L VN +RG++ QL + Sbjct: 538 RVAYKLNVNSFRGNESLQLMIE 559 >gi|323487484|ref|ZP_08092778.1| hypothetical protein HMPREF9474_04529 [Clostridium symbiosum WAL-14163] gi|323399166|gb|EGA91570.1| hypothetical protein HMPREF9474_04529 [Clostridium symbiosum WAL-14163] Length = 569 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 169/579 (29%), Positives = 283/579 (48%), Gaps = 29/579 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76 W+ + NR I ++ I + AR++ NR + + +LN ++ L DP ++ Sbjct: 6 WMVQTKKADFNR---IAERFGIDPVTARIIRNRGIEGEDRINLYLNGTVGTLY-DPRLMK 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +KAA + I +KI I GDYD+DG S ++ + + IPDRI DGYG Sbjct: 62 DMEKAAAILKDKIDRKKKIRIVGDYDIDGVCSTYILYKAFLRLGAPVDYDIPDRIRDGYG 121 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-----SEEIPA 191 N S++EK +G I+T D G ++Y ++ A +G+ V++ DHH+V PA Sbjct: 122 INESIIEKAAEQGIDTILTCDNGISAYSQIELAKKKGMTVVITDHHEVPLEEGKEIIPPA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+++P R + +C A V + ++ +++ + LL+ A+ATV Sbjct: 182 DAVIDPKREECSYPFPEICGAVVAWKLVQVLFAECGV-----PAKEWEELLEFAAIATVG 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 DV+ L NR V GL + GL+ L + N+ S ITA ++G++IGP +NAGGR Sbjct: 237 DVMRLQDENRIIVKYGLSRMEHTSSIGLRKLAAKNNLDLSQITAYHIGFVIGPCLNAGGR 296 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + L LL+S D +E + LA +L LN R+ M E A +V T Q V Sbjct: 297 LQTAKLALSLLLSGDEEEADRLATELKELNDMRKDMTEQGTEAARLQVDTY---YSQDKV 353 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV H + G++A RL+E + +PS ++ E+ GSGRSIE + + + Sbjct: 354 LVVYLPECHESLAGIIAGRLREHYQKPSIVLTKGEEAV-KGSGRSIESYHM--FQKLSEV 410 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +++K GGH MAAGL++E N G + + + ID + + + Sbjct: 411 KELMLKFGGHPMAAGLSLEEKNIGEFRRQLNE--RSGLREEDFKAKVWIDVPMPVNYMTE 468 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRV 548 LI P+G GN P+FA N ++++ RV+ +++T E ++ ++AI F Sbjct: 469 RLIREFRCLEPFGQGNEKPLFAQKNLRVRNSRVIGRNRNVVRLTLEEENGFAMEAIYF-- 526 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 G + + + M + + +N + G+K Q V Sbjct: 527 -GDGIAFEDERGGRRVMDIVYYPEINEYNGNKSLQAVVR 564 >gi|223044130|ref|ZP_03614169.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus capitis SK14] gi|222442524|gb|EEE48630.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus capitis SK14] Length = 757 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 159/591 (26%), Positives = 284/591 (48%), Gaps = 30/591 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72 S + W E I + +K + IV +VL ++N V + D L + L DP Sbjct: 4 SRYHWDLAQPTEYITD--DLAKKLKLSPIVKKVLESKNLVQENNILDVLEDKV--LDHDP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D KA RI AI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 WLLSDMQKAIDRINLAIDKNERILVYGDYDADGVTSTTILVNTLQQLGAQVGWYIPNRFS 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN +EG LIITVD G +D ++ + G+DVIV DHH++ A Sbjct: 120 EGYGPNELAFRNAYDEGISLIITVDNGIQGHDEIKMVQDLGVDVIVTDHHEIGRTLPEAL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D +LC AGV + + + Q + L A+ T+ D Sbjct: 180 AIVHPMHPDFDYPFKYLCGAGVAYKLSQALLSHPPQ-----------QFIALAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR+ V +GL + Q + A++++ + I E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRSIVKRGLKILNEQTPVSINAILKQAGYNDQINEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+ D+ +E E LA +++ NQ R+ + + + E+A + Q Q ++ Sbjct: 289 DASLAAELLMVDEFEEAEFLAEQVEHFNQERKDIVAEITEEALSLAEEQV--QQGNLFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + + WH G++G++A+++ E + P+ ++ + E GS RSI+ + + Sbjct: 347 LAKENWHEGVLGIVASKIVETYALPTLILNIDLEQNHAKGSARSIDQVSM--FEILNAHQ 404 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGH MAAG+T++ N L ++ + + P +D +LN S + + Sbjct: 405 DLITKFGGHHMAAGMTMDIENIDELRKGLNEWMKQLSESTSLAPRKHVDVLLNESEITVK 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 I ++ P+G +P F + ++SI+ + HL++ L A+ + Sbjct: 465 NIQDIQKLRPFGTDFNSPTFEVNDLNVKSIKAIGQEGKHLKVAL---GENQLAALYWSYG 521 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 G+ +++ G+L +N W G++ QL + D + + Sbjct: 522 HF----AKEIEMGQPLNLIGNLQINEWNGNQSPQLIIQDIATETIQILDYR 568 >gi|255280218|ref|ZP_05344773.1| single-stranded-DNA-specific exonuclease RecJ [Bryantella formatexigens DSM 14469] gi|255269309|gb|EET62514.1| single-stranded-DNA-specific exonuclease RecJ [Bryantella formatexigens DSM 14469] Length = 598 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 176/590 (29%), Positives = 287/590 (48%), Gaps = 35/590 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 +WV + AI +K I + AR++ NR+V D A +++LN S+ L Sbjct: 23 QKWVVAAKRADFG---AIAEKFGIDQVTARLIRNRDVVGDAAIEEYLNGSLLNLHSA-HQ 78 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + DCDKAA + I +KI I GDYD+DG + ++ R L C N + +PDRI+DG Sbjct: 79 MKDCDKAAALLADKIDAQKKIRIIGDYDIDGVCATCILYRALQLCGANVDYDLPDRILDG 138 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +L++ +EG I+T D G + + + YA + G+ VIV DHH+ A AL Sbjct: 139 YGLNRNLIDLAGDEGVDTILTCDNGIAAVEEVAYARSLGMTVIVTDHHEPGEVLPEADAL 198 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP++ +LC A V + ++ ++ + + L++L ATV DV+ Sbjct: 199 VNPHQKSCPYPYKNLCGAAVAYKLVTVLCEAMGI-----PQDESEKLIELAGFATVGDVM 253 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 L G NR V +GL+ NPGL+ALI N IT+ ++G+++GP +NAGGR+ Sbjct: 254 DLTGENRILVKEGLLQLNHTENPGLQALIRVNNLQDKEITSYHIGFVLGPCLNAGGRLDT 313 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ E +LA +L LN+ R+ M EQA + + ++ V+VV Sbjct: 314 AKKSLELLLAQSEAEATLLAEELLELNERRKAMTLEGYEQAVELI--ENGPMRDDKVLVV 371 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 H + G++A RL+E++ RP+ ++ E GSGRSIE + + + + + Sbjct: 372 YLPDCHESLAGIIAGRLRERYYRPAIVLTQGESAV-KGSGRSIESYSMFQELQKC--ADL 428 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 +K GGH MAAG ++E+ N G L A + T ID + + LI Sbjct: 429 FLKFGGHPMAAGCSLEKENVGELRRRLN--AQTTLTQEDLTEKIVIDVPMPLGYITERLI 486 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGT 551 + L P+G GN PVFA N + S R V + +++ + + A+ F T Sbjct: 487 EELSCLEPFGKGNSKPVFAEKNLDILSARAVGQSGRVVRLRVANAAGTVMDAVYFG-DAT 545 Query: 552 PLGEFLMQSRGK--------------RMHVTGHLCVNYWRGSKRCQLRVL 587 E++ + G+ ++ V + ++ + G + Q+ V Sbjct: 546 LFREYVEEKYGRTETEKLFQGRRNAVQLSVIYYPSIHEYNGLRSIQIVVQ 595 >gi|318041656|ref|ZP_07973612.1| single-stranded DNA-specific exonuclease [Synechococcus sp. CB0101] Length = 635 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 165/581 (28%), Positives = 272/581 (46%), Gaps = 29/581 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAI-PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 S RW + + + + ++A VL R + L P+ PD Sbjct: 6 SEQRWQLPAPVQIDPQL----RSSGLCDPLLA-VLQRRGYGDPEAIAALLEPAPA---PD 57 Query: 72 PL-ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P D KA +R+ A E++ I GDYD DG S AL++ L H IP R Sbjct: 58 PRRHFPDLGKAVQRLRLACKQGERLAICGDYDADGMTSTALLVGVLRHLGAQPQAEIPSR 117 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + DGYG N ++E+ EG +L++TVD G + +AL A +DV+V DHH + E P Sbjct: 118 LDDGYGLNTGMVERLAEEGIRLLVTVDNGVAAREALLRAEALEMDVVVTDHHTLPEELPP 177 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 AL++P + S L G+ +++ + + R R + + + DL + T+ Sbjct: 178 LMALLHPACTPEHSPYRGLAGVGLAYVLAMALARNCRSEQGLAMAR------DLFCIGTI 231 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309 D+ PL G+NR +++ GL +R G GL+AL + +P+ A +G+ I P INA G Sbjct: 232 ADMAPLQGVNRRWLIDGLPGLKRSGLAGLQALQQVAGLEDAPVDAGAVGFQIAPRINAVG 291 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G+ L LL + D +E LA + + LN+ RR + A+ AEA+ L D Q++ Sbjct: 292 RLGDPQLVVDLLTTADEKEALELARQCEQLNRQRRDLCDAIE--AEARALVDADGDQRSP 349 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +++ WH G++G++AARL + FG P ++ E DG+ S R+ GF + + Sbjct: 350 FLLLAQSHWHHGVIGIVAARLVDAFGLPVALLASEGDGRLRASVRAPRGFAVDAALQAC- 408 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +L + GGH A G TV L + A + + + + ++ + Sbjct: 409 -SDLLERHGGHPAAGGFTVRAEQITALHERLNARAETWLQQQGGLRLVEPEALVQLQEIT 467 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 L+ P+G+G+P P+F ++ R++ HLQ+T D ++AIA+R Sbjct: 468 PQFWQQLQRLEPFGSGHPAPLFWSSRCRISQQRLLRGGHLQLTLRQGD-AVIRAIAWRWG 526 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 Q K + V L +N W G+++ QL + Sbjct: 527 NDE------QQLPKEVDVAFQLRLNRWNGTEQLQLEIAALR 561 >gi|227890210|ref|ZP_04008015.1| possible recombination protein J [Lactobacillus johnsonii ATCC 33200] gi|227849212|gb|EEJ59298.1| possible recombination protein J [Lactobacillus johnsonii ATCC 33200] Length = 756 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 160/577 (27%), Positives = 279/577 (48%), Gaps = 30/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQRQANNLD---EGLIKDYGLTDIQAKLFALRGINTAENLDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKTIDRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ A++ V+ Sbjct: 119 PNMTRYQEIVEDGTKLIITVDNGVTGVEEIKYAQEHGVDVILTDHHTFQDQKPAAFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTICRALMQ-----------DTMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI+ ++ ITA ++G+ I P +NA GR+ ++ Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKPAGLTMGQITATDVGFNIAPRLNAVGRLANAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A +++ LN R+ + S + E A+V Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEKIATRIEELNNERKELTSKVYEDCLAQVEKNGW--QHRNTLVIYN 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E G+ GSGRS +GF++ + ++E +L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDEAGELKGSGRSSKGFNLFNALEP-MKEDLLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+ + + + + V D LN + I Sbjct: 405 KFGGHDFACGLSFKADKI----EELRVRFEDSFKPSTDLEVKDFDFELNLKEITTDTIAE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 + GP+G GNP P+F+ ++S+ + H++ T E + L + F L Sbjct: 461 INLVGPFGTGNPEPIFSISEPHIKSLFKMGKDKNHVKFTAEKNAGK-LTIVGFN--KGFL 517 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L+ + + L +N W+ Q + Sbjct: 518 NQTLLPFIKE---LYVTLSLNSWKNISNVQGMLAGIE 551 >gi|170017530|ref|YP_001728449.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc citreum KM20] gi|169804387|gb|ACA83005.1| Single-stranded-DNA-specific exonuclease RecJ [Leuconostoc citreum KM20] Length = 654 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 170/581 (29%), Positives = 272/581 (46%), Gaps = 26/581 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72 S W + +T + I + A ++ + + A +L P+I L DP Sbjct: 2 SQSNWRLMPQPPEKA-VRQLTSQLNINQLTATIVAQKGYTTPEAAFGYLQPTITQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L D DKA R+ +A + EKI+++GDYD+DG S A+M+ L + YIP+R Sbjct: 60 MLLHDMDKAFERLTEAAFGGEKIVVYGDYDLDGVTSTAVMVEALEVLGADVTAYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + ++ I EGAQ+I+TVD G + ++A+ A G+DVI+ DHH++ AY Sbjct: 120 DGYGPNVAAYQRLIAEGAQVIVTVDNGVSGHEAVAMAMRAGVDVIITDHHELAPTLPEAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D L GV F + + + LLDLVAL + D Sbjct: 180 AIVHPRHPDGHYPFADLSGVGVAFKLAQALLT--DAQPVTEKSELPTELLDLVALGEIAD 237 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310 +V L NR V GL PG+ AL++ PI +E + + I P +NA GR Sbjct: 238 MVSLTDENRTLVSWGLKQISDSPRPGIAALLKNAGQVADQPINSETVSFKIAPRLNAVGR 297 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G++ L LL+S D LA +++ +N R+ + + A+ D V Sbjct: 298 LGDAKLALDLLVSQDDDTAVNLATQVEAINAQRQEIVEEVFGAAKQIA--LSDKYHDDQV 355 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +V+ G+ WH GI+G++A+RL E +P +S + G GSGRS FD+ ++ Sbjct: 356 LVIAGENWHRGILGIVASRLVELMQKPVIVLSQVD-GVYKGSGRSYGNFDLYTLMG--QY 412 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA A GL + + L Q + P I ++ +L+A + Sbjct: 413 RDLYDTFGGHASALGLAITPAHLTSL----QNQIKQLQPLNIAEKEVNVNMMLSAETMTT 468 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 A D L P+G NP PVF K+ + H+++T + ++A+ F Sbjct: 469 ASYDALTLLEPFGTDNPQPVFGVQEPKIAKAATMGTTNQHIKLTLANH----VEAVGFNH 524 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + L +NY+RG K+ QL + D Sbjct: 525 PEW----ASVVAHPQNISFAATLGMNYFRGQKKLQLLLADM 561 >gi|53805029|ref|YP_113143.1| single-stranded-DNA-specific exonuclease RecJ [Methylococcus capsulatus str. Bath] gi|53758790|gb|AAU93081.1| single-stranded-DNA-specific exonuclease RecJ [Methylococcus capsulatus str. Bath] Length = 599 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 180/588 (30%), Positives = 279/588 (47%), Gaps = 38/588 (6%) Query: 32 AITQKHAI------PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 + ++ ++ ++AR+ +R+V + + L S+ L P P +L D Sbjct: 22 ELAKRMSLASPPDASPLLARLYQSRSVFTPED----LGRSLNEL-PAPSLLKGMDAMTAE 76 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME 143 + AI + IMI D+D DGA S A+ MR L + +P+R GYG P L+E Sbjct: 77 LEAAIRGQKSIMIVADFDADGATSCAVAMRGLRALGAERVSFIVPNRFTCGYGLTPELVE 136 Query: 144 ---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 + +++TVD G + + A +G+ V+V DHH A A+VNPN Sbjct: 137 LIFRGGATPPDMLLTVDTGIACHAGIAAARARGMKVLVTDHHLPGESLPAADAIVNPNLP 196 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLI 257 D L GV+F VL + R LR+ +L LLDLVAL TV DVVPL Sbjct: 197 GDGFPGKALAGVGVIFYVLSGLRRRLRESGWFEGGRQPPNLAELLDLVALGTVADVVPLD 256 Query: 258 GLNRAYVVKGLMVARR-QGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIGE 313 +NR V +GL R + PG++AL+E + TA LG+ +GP +NA GR+ + Sbjct: 257 RVNRILVHQGLQRIRAGRACPGIRALLEVADAKRGGAATTAGTLGFTLGPRLNAAGRLDD 316 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV- 372 +LG L++DD + LA +LD +N+ R+ +E+ M A A + + + + S Sbjct: 317 MSLGIACLLADDMNAAKELAERLDGMNRERKTIEAQMQADAWAMLRIGAEPLPRQSDRWS 376 Query: 373 -----VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS- 426 V WH G++G+LA+R+K++ RP A + EDG GS RSI G + ++ Sbjct: 377 GSAAIVFDPAWHQGVIGILASRIKDRLHRPVIAFARGEDGLLRGSARSIAGVHVRDVLCA 436 Query: 427 -FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 A G++V+ GGHAMAAGL +E + F+ ++ + DG L Sbjct: 437 VAARHPGLIVRFGGHAMAAGLALEESRLAAFTEAFEAEVAGVLEGVELEHAVVTDGELPP 496 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAI 544 ++ L AGP+G G P P+F + +R+V HL++T E + ++ + Sbjct: 497 DDFHLDTARCLRDAGPWGQGFPEPLFDGE-FDVLGMRIVGEKHLRLTLEVPGAARQVEGV 555 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 AF V P +R+ L VN +RG QL + PV Sbjct: 556 AFFVADPPAW-----LGCRRLRAAYRLDVNEFRGVSNLQLGIEYMEPV 598 >gi|238028011|ref|YP_002912242.1| putative single-stranded-DNA-specific exonuclease [Burkholderia glumae BGR1] gi|237877205|gb|ACR29538.1| Putative single-stranded-DNA-specific exonuclease [Burkholderia glumae BGR1] Length = 564 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 181/576 (31%), Positives = 276/576 (47%), Gaps = 30/576 (5%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 A A+ +H + ++AR+ R V+ + + ++ L+P P L CD AA Sbjct: 9 ASPADAEALA-RHGLHPVLARLYAARGVTCPEDIET----TLARLVP-PGGLKGCDAAAA 62 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 + A+ +++++ DYD DGA + A+ +R L + +P+R GYG P ++ Sbjct: 63 LLADALAAGKRMLVVADYDCDGATACAVAVRGLRMLGATIDYLVPNRFEYGYGLTPEIVR 122 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 L+ITVD G S + + A GIDV+V DHH S A A+VNPN+ Sbjct: 123 LAAARRPDLLITVDNGIASVEGVAAANALGIDVLVTDHHLPGSTLPAARAIVNPNQPGCT 182 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLN 260 H+ GV+F VL+ + LR+ N L LLDLVAL TV DVV L G N Sbjct: 183 FPSKHIAGVGVMFYVLLALRAELRRRNAFDAARPEPRLDGLLDLVALGTVADVVRLDGNN 242 Query: 261 RAYVVKGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGS 318 R V +GL R + +A +LG+ +GP +NA GR+ + +LG Sbjct: 243 RVLVAQGLQRIRNGRMQPGIAALFRAAAREARSASAFDLGFGLGPRLNAAGRLSDMSLGI 302 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 L +DD+ LA +LD +N+ RR +E+ M +QA A + + D +A+ I + W Sbjct: 303 ECLTTDDAGRAWELAQQLDTMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPDW 360 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGIL 434 H G++G++A RLKEKF RPSF + +D GSGRSI GF + + E +L Sbjct: 361 HQGVIGIVAGRLKEKFHRPSFTFAHADDSGARVKGSGRSIPGFHLRDALDLVSKREPDLL 420 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 V GGHAMAAG+T+E N R F+ A + A V + DG L + ++ Sbjct: 421 VTFGGHAMAAGVTLETHNVPRFAAAFEAVAREWLSADALARVIETDGDLEDAYFTPQFVE 480 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 +++ A +G G P P+F+ ++ S +V HL++ ++ + AI F Sbjct: 481 LID-AAVWGQGFPAPLFSGE-FEVASQTLVKDKHLKLQL-ARGRQRFGAIWFNHTE---- 533 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + L + W G R QL V A+ Sbjct: 534 -----PLPARATLAYRLAADTWNGVTRVQLIVEHAA 564 >gi|293375179|ref|ZP_06621466.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter sanguinis PC909] gi|292646216|gb|EFF64239.1| single-stranded-DNA-specific exonuclease RecJ [Turicibacter sanguinis PC909] Length = 741 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 164/567 (28%), Positives = 270/567 (47%), Gaps = 30/567 (5%) Query: 38 AIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 + D V ++++NR+++ + FL+ + DP + +D K+ RI +AI N E I+ Sbjct: 24 NLRDEVKQLILNRHLASEKSIDTFLSG--EGPLYDPFLFSDMKKSVDRINKAIENQEPIL 81 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I+GDYD DG +++MR L + YIP+R +GYGPN + I++G +LIITV Sbjct: 82 IYGDYDADGVTGTSILMRALRGLGAIVDYYIPNRFYEGYGPNEDAFMQAISDGYKLIITV 141 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + G+D+I+ DHHQ E P + LD L AGV Sbjct: 142 DNGISGLLEADILPPYGVDLIITDHHQ-PKECHPNAFSIIHPELDSSYPFHQLSGAGVAL 200 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + + + + AL T+ DVVPLI NR V +GL RR Sbjct: 201 KLAQALI----------GDGLSEEYFAIAALGTIGDVVPLIDENRYIVKRGLEAIRRTEL 250 Query: 277 PGLKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL AL+ I E N+G+ I P +NA GR+ E+ L LLISDD E ++A + Sbjct: 251 CGLNALMNEAKIDKSEVDEVNVGFEICPRLNAPGRMDEAALAVELLISDDEMEAALIATQ 310 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395 ++ N R+ + +L+QA + + ++ V+++ WH GI+G++A RL + + Sbjct: 311 IESFNLERQKVTQKVLDQASTLMTPK--QLEDKKVVLLYQPNWHEGILGIVAGRLSKLWQ 368 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455 + F ++ + DG GS R++EG+ + E ++ + GGHA+AAG+T+ N Sbjct: 369 KAVFVLTDDHDGFVKGSARAVEGYHL--FDLLNQNEDLIERFGGHALAAGITLAPENIQP 426 Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 L D + + P+ ++D L+ +++ L++ L PYG GN PV Sbjct: 427 LEDKLN----ADLRGIKIQPMQRVDLNLSLEKIDLELVEDLAVLAPYGEGNRPPVIGIEQ 482 Query: 516 HKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 K+++I+ + HL+ T + + L AIAF + + G + + Sbjct: 483 VKVKNIKAIGNKLQHLKFTIYDEAHQ-LDAIAFNKADL----MIYLTPDTLFDFIGEIKI 537 Query: 574 NYWRGSKRCQLRVLDASPVEGHHFAKK 600 N W G++ Q V+D E + Sbjct: 538 NEWNGNRTLQFHVMDVKCDEFQLLDLR 564 >gi|284048852|ref|YP_003399191.1| single-stranded-DNA-specific exonuclease RecJ [Acidaminococcus fermentans DSM 20731] gi|283953073|gb|ADB47876.1| single-stranded-DNA-specific exonuclease RecJ [Acidaminococcus fermentans DSM 20731] Length = 782 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 170/587 (28%), Positives = 272/587 (46%), Gaps = 33/587 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 + + + + ++ I ++A +LV R+++ + K+FL DP L D Sbjct: 6 IRRTDEAREPQIRTLCRELGISPLLAGILVRRDLTEPEKVKEFLEGK-TQPYYDPFRLKD 64 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 D+A RI+QA+ E + I+GDYDVDG ++ +L+ FL ++Y+P R +GYG Sbjct: 65 MDRAVDRILQALQQGEPMTIYGDYDVDGTSASSLLYLFLQARGAKVDVYVPRRDREGYGL 124 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N +EK G +L+ITVD G + + A +G+D+I+ DHH + PA A+VNP Sbjct: 125 NGPALEKIAARGTKLLITVDTGISGAQVVADA-PKGLDIIITDHHLAPRQLPPALAVVNP 183 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N+ D + GV F + L Q + L++LVAL TV D+VPL Sbjct: 184 NQPGDEYPFKGIAGVGVAFKLCQA----LEQRRTGQPDLYWDELIELVALGTVADMVPLQ 239 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGPSINAGGRIGESNL 316 NR V KGL PGL+ALI S I + +G+ +GP INA GR+ ++ Sbjct: 240 DENREIVRKGLARMPHSPLPGLQALIHVTVAPGSAINSGTIGFGLGPRINAAGRLDDAMT 299 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 +LL + D + + LA +L+ NQ R+ + + E+AE ++ Q +V+ + Sbjct: 300 AVKLLTARDPETAKELAEELNSANQERQALSQKIFEEAERQLAKQG---PPEWSLVLGEE 356 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WHPG++G++A+R+ EK+ PS +S + + GS RSI D+ + + LV+ Sbjct: 357 GWHPGVIGIVASRMTEKYHLPSVLLSIDGE-TAKGSCRSIPPLDLYQALDRC--RDHLVQ 413 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS-AVNIALIDM 495 GGHA AAGLT+ + F + ++ P D + + + Sbjct: 414 FGGHAQAAGLTIRTAEIPAFREAFARVVAEMLDHKPYEPAAVPDWFVPEDREITPEAVAQ 473 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L P+G GNP PV F ++Q + ++ H + F + FR G E Sbjct: 474 LAQMEPFGVGNPAPVLGFAKAQIQEVSLLGRDHNHLKFLLKQG------GFRYKGLLWQE 527 Query: 556 ---FLMQSRGKRMHVTGHLCVNYWRGSKRCQLR---------VLDAS 590 F G+ V VN +RG L ++D Sbjct: 528 GPRFHSFYPGEVAAVAFSPRVNTFRGVTAVDLEVSAVEAPYTIIDWR 574 >gi|113867191|ref|YP_725680.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia eutropha H16] gi|113525967|emb|CAJ92312.1| Single-stranded-DNA-specific exonuclease RecJ [Ralstonia eutropha H16] Length = 565 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 172/580 (29%), Positives = 261/580 (45%), Gaps = 25/580 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + Q A ++ + +AR+L R V+ L + L+P P + Sbjct: 3 RIAIRQYSPEHASSLA-AAGLHPTLARILAARGVARA---AELATDLPELVP-PAAMKGI 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI ++++I DYD DGA + A+ +R L +P+R GYG Sbjct: 58 GHAAAYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGARVEYIVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++ + +I+TVD G S D + A GIDV+V DHH SE A +VNPN Sbjct: 118 PEIVALAARQQPDVIVTVDNGIASVDGVAAANALGIDVVVTDHHLPGSELPQAAVIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPL 256 + +L GV+F VL+ + LRQ L +LLDLVAL TV DVV L Sbjct: 178 QPGCEFPSKNLAGVGVMFYVLLALRAELRQRGVYTQATQPPLQTLLDLVALGTVADVVKL 237 Query: 257 IGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 NR V +GL R R ++ +LG+ +GP +NA GR+ + Sbjct: 238 DTNNRILVAQGLRRMRAGRMQPGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADM 297 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIV 372 +LG L+++D+ +A +LD +N+ RR +E+ M ++A + D + Sbjct: 298 SLGIECLLTEDANRAWEIAQELDSMNRERRDIEAGMQQEALQILEQPLAGPDPSARFTVS 357 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430 V D WH G++G++A+RLK+KF RP+ + ++ GSGRSI GF + + Sbjct: 358 VFNDTWHQGVIGIVASRLKDKFHRPTITFAPGDETTVKGSGRSIPGFHLRDALDLVSKRH 417 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+L+K GGHAMAAGLTV F + F+ + V + DG + + Sbjct: 418 PGMLLKFGGHAMAAGLTVRAERFAEFQEAFEAVGREWLTDDQLARVIETDGDIEDQCFSP 477 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 + +LE +G G P P F + V+ HL++ + S+ L AI F Sbjct: 478 EFVTLLEQ-QVWGQGFPAPTFCGE-FDVLRQSVLKGKHLKLQL-GRGSQRLDAIWFNHAD 534 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S G V L N + G R QL + A Sbjct: 535 ---------SLGASAQVAYRLDNNTFNGVTRVQLVIEHAQ 565 >gi|260892285|ref|YP_003238382.1| single-stranded-DNA-specific exonuclease RecJ [Ammonifex degensii KC4] gi|260864426|gb|ACX51532.1| single-stranded-DNA-specific exonuclease RecJ [Ammonifex degensii KC4] Length = 865 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 176/581 (30%), Positives = 282/581 (48%), Gaps = 39/581 (6%) Query: 18 WVSLLGQEGINRALAI-TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W+ Q A A+ ++ I ++A++L+NR V +++ A FLN + L P P + Sbjct: 4 WIPFPQQP---LACALWARELGIDPVLAQILLNRGVKTLEEADFFLNGRLAQLPP-PGKM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134 D ++A +RI A+ N EKI+++GDYD DG + L++ L H ++P R DG Sbjct: 60 KDLERAVKRIRSAVANQEKILVWGDYDADGITATVLLVSVLKHLGAEEVTYHLPTR-ADG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +G L++TVDCG + + + G+D+I+ DHH+ E A+A+ Sbjct: 119 YGLKGDFLRAAKEQGVSLVLTVDCGVKASEEARLCKLMGLDLIITDHHEPSDELPEAWAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R D L GV F + + R + LD+VAL TV DV+ Sbjct: 179 INPRRPDCPYPFKELAGVGVAFKLATALSREAAE-----------EWLDVVALGTVADVM 227 Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 PL+G NR V +GL + PGL L+ S P+T L +++ P +NA GRIG+ Sbjct: 228 PLVGENRVLVREGLKLFNSSRLRPGLAGLLSAAGASLPVTVRTLSFVLAPRLNAAGRIGD 287 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++ +R L++ +E E + KL+ LN+ R+ E+A L++A+ +L + + V+VV Sbjct: 288 PDVAARCLLA-VEEEAEQWSRKLEELNRERQRWENACLKEAD--LLAKRAREASSRVLVV 344 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 E W G+ GL+A RL + P+F I E G GSGR+ E F++ + +S A Sbjct: 345 EASDWPVGLTGLIAQRLHSLYQLPAFVI-VWEGEVGRGSGRADESFNVYQALSHASPY-- 401 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGHA A G T+ R +F +++A N+ P D VL + L+ Sbjct: 402 LLDYGGHAGAGGFTLTRESFPHFVASLEEYARNLPPDRTYHACRYFDAVLELEKLTPRLM 461 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGT 551 + L P+G GNP P ++ +R V HL++ Q L+ +AF G Sbjct: 462 EELGRLEPFGPGNPPPRLVAQGVEVVEVRRVGKEEEHLRLRLR-QGRACLEGVAFGRGGE 520 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L + + +N G +L++LD P Sbjct: 521 ELPRL--------VDLVFEPSINELTGQ--PELKILDWWPA 551 >gi|161524329|ref|YP_001579341.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans ATCC 17616] gi|189350915|ref|YP_001946543.1| single-stranded-DNA-specific exonuclease [Burkholderia multivorans ATCC 17616] gi|160341758|gb|ABX14844.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans ATCC 17616] gi|189334937|dbj|BAG44007.1| single-stranded-DNA-specific exonuclease [Burkholderia multivorans ATCC 17616] Length = 565 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 183/581 (31%), Positives = 274/581 (47%), Gaps = 30/581 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + A A+ +H + ++AR+ +R V S + ++ L+P P L Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + AI ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAAALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S ++ A +GIDV+V DHH PA A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPPARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIG 312 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG LI+DD LA +LD +N+ RR +E+ M +QA A + D A I Sbjct: 297 DMSLGIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACSIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428 + +WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 355 LFNPKWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E +LV GGHAMAAG+T++ N R F+ A + V + DG L + Sbjct: 415 REPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNR 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + L + W G R QL V A Sbjct: 532 TEPLPASAL---------LAYRLVADTWNGVTRVQLIVEHA 563 >gi|326693132|ref|ZP_08230137.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc argentinum KCTC 3773] Length = 653 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 177/598 (29%), Positives = 288/598 (48%), Gaps = 33/598 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDP 72 S W L Q +T + I + A ++ + + A +L PSI L DP Sbjct: 2 SQNNWRLLP-QPVEKTVRQLTSQLNIAQLTATIVAQKGYTTPEAAFAYLQPSIDQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + L D DKA R++ A + EKI+++GDYD+DG S A+M+ L + YIP+R Sbjct: 60 MQLHDLDKALERLMTAAFEGEKIVVYGDYDLDGVTSTAVMLEALQVLGADVTAYIPNRFQ 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + ++ I +GAQ+I+TVD G + ++A+ YA +QG+DVI+ DHH++ AY Sbjct: 120 DGYGPNLAAYQRLIADGAQVIVTVDNGVSGHEAVAYAMSQGVDVIITDHHEMGPTLPDAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + L GV F + + + + + +LDLVAL + D Sbjct: 180 AIVHPRHPEGDYPFTDLSGVGVAFKLAQALLT--DGEPVQDKSELPMEMLDLVALGEIAD 237 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310 +V L NR V GL PG+ AL++ PI +E +G+ + P +NA GR Sbjct: 238 MVSLTDENRTLVSWGLKQMAESPRPGIAALLKSAGQLPEQPIISETVGFKLAPRLNAVGR 297 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G++ L LL++ + LA +++ +N R+ + + A+ L+ V Sbjct: 298 LGDAQLALDLLLTQSPDDATALAPQVEAINAQRQEIVEEVFGAAKQLALSDAYA--NDQV 355 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV GD WH GI+G++A+RL E +P +S + G GSGR+ FD+ ++ Sbjct: 356 LVVAGDDWHQGILGIVASRLVELIHKPVIVLSLVD-GTYKGSGRTYGDFDLYALMG--QY 412 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGHA A GL + N L + ++P ++ +L + + Sbjct: 413 RDLYDTFGGHASALGLGISPANLAILRERLSSLPALVIP----EKQVAVNMMLPVNQLAP 468 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 L D L+ P+G NP PVF F K++ + H+++T +Q ++A+ F Sbjct: 469 TLYDALKLMEPFGTDNPEPVFGFQTPKIEKAMTMGAAQQHVKLTLANQ----IEAVGFNH 524 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS---PVEG----HHFAK 599 + Q G + L +NY+RG + QL + D + PVE FA+ Sbjct: 525 PD--WTRIVQQPTG--VSFAATLGLNYFRGQAKLQLLLADVALPEPVENTAHKQFFAQ 578 >gi|325110877|ref|YP_004271945.1| exonuclease RecJ [Planctomyces brasiliensis DSM 5305] gi|324971145|gb|ADY61923.1| exonuclease RecJ [Planctomyces brasiliensis DSM 5305] Length = 599 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 172/587 (29%), Positives = 283/587 (48%), Gaps = 23/587 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W G + + ++A+VL++R AK+F++ + L P Sbjct: 3 RTWQFSSHDTG--LVSTLASQMRCSTLLAQVLMSRGFRDATAAKEFVSARLSALQE-PET 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +AA RIV A+ +I I+GDYDVDG S +++++ L A+ YIP R+ +G Sbjct: 60 LPGAVQAAERIVAAVQAGRRITIYGDYDVDGMTSTSILLQCLHAAGATADYYIPCRLEEG 119 Query: 135 YGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YG N + + + +L++TVDCG S + + A G+++++ DHHQ + A Sbjct: 120 YGLNCDAIRELHQADPERLVVTVDCGIASLEEAKLAKELGLELVITDHHQFGEQLPEAEV 179 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVC 251 LV+P + D LC AGV F + I + L + + L S + L + TV Sbjct: 180 LVHPRIVPDADCFPELCGAGVAFKLAWAICQQLGDGKRASNRMRDFLKSAVGLATIGTVA 239 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGG 309 DVVPL+G NR V GL ++Q GL+AL+ S +T+E++G+ + P +NA G Sbjct: 240 DVVPLVGENRMLVKYGLQTLQQQATIGLQALMAVSGLRDKSALTSEDIGFGLAPRLNAAG 299 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G++ L LL++ D+Q LA LD LN+ R+ +E +L+QA+ +V + Sbjct: 300 RLGQARLAVELLVTTDTQRAAQLAEYLDGLNKQRQTVERKILKQAKEQVEAH-ESWADDP 358 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFA 428 V+V+ WHPG++G++A+R+ E + +P+ I+ G G GSGRS GF++ K + A Sbjct: 359 VLVIAHHDWHPGVIGIVASRVAEIYEKPTLLITLGTGHGFGQGSGRSYAGFNLHKAMLEA 418 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNAS 486 L K GGH A GL + N A P ID + + Sbjct: 419 --GHTLEKFGGHPAAVGLKIAEGNIEDFRTAINDAARKQQGGGDEELAPRL-IDSEVALN 475 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNL--AHLQMTFESQDSETLQA 543 +++ I L+ GP+G N P+F +L R + HL + Q +++A Sbjct: 476 ELSVKAIQELDFLGPFGCQNERPIFVSTGVELAEPPRTMGEGGRHLSLQVR-QFGHSMRA 534 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +AF E L G + + +N +RG + +L+++D Sbjct: 535 VAFGRGD--WAEQLAACEG-TLALCFKPNINEFRGRRNVELQLIDWK 578 >gi|171322225|ref|ZP_02911071.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria MEX-5] gi|171092450|gb|EDT37796.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria MEX-5] Length = 565 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 181/581 (31%), Positives = 274/581 (47%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAPLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT+ + R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + L + W G R QL V A+ Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 564 >gi|293531073|ref|ZP_06671755.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus M1015] gi|290920341|gb|EFD97407.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus M1015] Length = 757 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQDHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A + + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|49483880|ref|YP_041104.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|257425760|ref|ZP_05602184.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus 55/2053] gi|257428420|ref|ZP_05604818.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431058|ref|ZP_05607437.1| single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus 68-397] gi|257433744|ref|ZP_05610102.1| single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus E1410] gi|257436659|ref|ZP_05612703.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus M876] gi|282906042|ref|ZP_06313897.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908955|ref|ZP_06316773.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914441|ref|ZP_06322227.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus M899] gi|282924734|ref|ZP_06332402.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus C101] gi|283958396|ref|ZP_06375847.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus A017934/97] gi|293503514|ref|ZP_06667361.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus 58-424] gi|293510532|ref|ZP_06669238.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus M809] gi|295428211|ref|ZP_06820843.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590821|ref|ZP_06949459.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus MN8] gi|49242009|emb|CAG40707.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|257271454|gb|EEV03600.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus 55/2053] gi|257275261|gb|EEV06748.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278261|gb|EEV08903.1| single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus 68-397] gi|257281837|gb|EEV11974.1| single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus E1410] gi|257284010|gb|EEV14133.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus M876] gi|282313569|gb|EFB43964.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus C101] gi|282321622|gb|EFB51947.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus M899] gi|282327219|gb|EFB57514.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331334|gb|EFB60848.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus Btn1260] gi|283790545|gb|EFC29362.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus A017934/97] gi|291095180|gb|EFE25445.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus 58-424] gi|291466896|gb|EFF09416.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus M809] gi|295128569|gb|EFG58203.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575707|gb|EFH94423.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus MN8] gi|315195538|gb|EFU25925.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus CGS00] Length = 757 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A + + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|282911272|ref|ZP_06319074.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus WBG10049] gi|282324967|gb|EFB55277.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus WBG10049] gi|312437897|gb|ADQ76968.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus TCH60] Length = 757 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A + + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|227484947|ref|ZP_03915263.1| single-strand DNA-specific exonuclease [Anaerococcus lactolyticus ATCC 51172] gi|227237102|gb|EEI87117.1| single-strand DNA-specific exonuclease [Anaerococcus lactolyticus ATCC 51172] Length = 576 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 176/589 (29%), Positives = 283/589 (48%), Gaps = 30/589 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W ++ L + I + A +L NR++ S +LNPS+ L DP +L Sbjct: 3 NWFLYNKKQNYINNLKLG---NITKLDALILGNRDIISPSKVDMYLNPSLSKLH-DPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA I+ + N +I IFGDYD DG ASV +M L N + IP R+ +GY Sbjct: 59 NDMDKAVELIIDTMKNGGEIRIFGDYDQDGIASVMTLMDGLLFYYDNISYDIPHRVDEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + + +K I + L+IT D G T ++ + N GI+VIV DHHQ+ EE Sbjct: 119 GISSKMSDKAIEDKVSLVITCDNGITGFEQIDNLKNAGINVIVTDHHQIHKEENDEWLNQ 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A++NP RLD LC AGV F ++ +Y+ L D+ L SLL+ VA Sbjct: 179 ILPNADAVINPKRLDSTYPFDDLCGAGVSFKLIQGLYQKLDGDDYY-----LYSLLEYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCD+V L NR +V++GL GLKAL++ + LG+++GP +N Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRLNETEKIGLKALLDEAGWDKDVDEYTLGFILGPLMN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 + GR+ + L LLI +D ++ +A L LN R+ + + + D Sbjct: 294 STGRLKSAKLAIDLLIEEDIDKIYDMASDLVKLNNERKSLTETAFNKIIELIKENSYD-- 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMV 425 + VIVV + I G++A R+KEK+ RP+ ++ +E+G GSGRSI +++ Sbjct: 352 KDDVIVVYAPDINESICGIVAGRIKEKYYRPTIILTNAKEEGIAKGSGRSIPAYNM--FE 409 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + L GGH MA GL+++ + F + ++ + + ID + Sbjct: 410 QISPYDDKLESFGGHPMACGLSIKIDEIDKFRIFLNR--NSKLTSTDKEQSINIDTQIPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAI 544 S +++ + L+ PYG N P+FA + +I ++ + Q+ AI Sbjct: 468 SKLSLEFAESLDRFKPYGKDNSRPIFANKGVDIAAISMIGKDKNTLRLSLFQNGNYYNAI 527 Query: 545 AFRVYGTP---LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F+ +F GK++ + + VN +RG++ QL++LD Sbjct: 528 KFQAEDDYNYLKEKFDGDILGKKIDIVYYPDVNEFRGNRTLQLKLLDIR 576 >gi|282904216|ref|ZP_06312104.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus C160] gi|282595834|gb|EFC00798.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus C160] Length = 757 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A + + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|258448793|ref|ZP_05696905.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A6224] gi|257858071|gb|EEV80960.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A6224] Length = 757 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 160/588 (27%), Positives = 284/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDFAMNEQQILDYR 568 >gi|22298786|ref|NP_682033.1| putative single-strand DNA-specific exonuclease [Thermosynechococcus elongatus BP-1] gi|22294967|dbj|BAC08795.1| tll1243 [Thermosynechococcus elongatus BP-1] Length = 775 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 161/587 (27%), Positives = 278/587 (47%), Gaps = 24/587 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPD 71 + RW+ + A + + +A + + R ++ A + FL P L P Sbjct: 23 LPQQRWLLPPIDPECHDA--LRRALGCHPSLAEIYLRRGLTTPTAVRAFLEPETLELPPP 80 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 + D D A + +AI +K+ I GDYD DG S AL++R L H + + IP R+ Sbjct: 81 NAVFPDLDLAVELLQRAIARGDKMTICGDYDADGMTSTALLLRALRHLGADIDYEIPSRM 140 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++++ + G +LI+TVD G + + A G+ VIV DHH V + PA Sbjct: 141 HEGYGINERIVQECYDRGVKLILTVDNGIAALHPILKARELGLTVIVTDHHDVPPQLPPA 200 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A++NP + S L G+ +++ V + + L + L +L L T+ Sbjct: 201 HAILNPKLVPPTSPYHTLAGVGMAYILAVSLAQRLG-----NWRPLVRPLRELCTLGTIA 255 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI----SSPITAENLGYMIGPSINA 307 D+ PL G+NR +V +GL G++AL++ + + +G+ +GP INA Sbjct: 256 DLAPLTGVNRRWVKQGLQTLPTSSLVGVQALMQVAGCLPEQDASLKPTAVGFRLGPRINA 315 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRIG+ + LL +DD + LA + N+ R+ + +A+ +A A + D QQ Sbjct: 316 IGRIGDPQVVIELLTTDDPDRAQELAALCEATNRRRQDLCAAIEAEAIAHLEETDFDPQQ 375 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+V+ WH G++G++A+RL E++G P F ++E + GS RSI F + + + Sbjct: 376 EWVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYENETIIRGSIRSIPEFHVFEALEA 435 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + +L+K GGH A G ++ + D + FA + P+ +D ++ Sbjct: 436 --TKDLLLKYGGHKAAGGFSLRAEHLAAWRDRLRAFAQTCLKPEDLRPLVTLDAEISFEQ 493 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545 + +E P+G+ NP P+F K+ + HL++T E Q+ + + A A Sbjct: 494 LTWDFYTQVEQLQPFGSENPQPMFCSRGVKILEQTPMGQQGEHLKLTLE-QNGQQMTAKA 552 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +R G FL R+ + HL + W G + +L + P Sbjct: 553 WR-----WGPFL--PLPTRVDIAYHLTAHTWHGETQLELELKGVKPS 592 >gi|221198421|ref|ZP_03571467.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans CGD2M] gi|221208902|ref|ZP_03581899.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans CGD2] gi|221171185|gb|EEE03635.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans CGD2] gi|221182353|gb|EEE14754.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans CGD2M] Length = 565 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 183/581 (31%), Positives = 272/581 (46%), Gaps = 30/581 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + A A+ +H + ++AR+ +R V S + ++ L+P P L Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + AI ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAAALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S ++ A +GIDV+V DHH PA A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGEALPPARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIG 312 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG LI+DD LA +LD +N+ RR +E+ M +QA A + D A I Sbjct: 297 DMSLGIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACSIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 355 LFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E +LV GGHAMAAG+T+ N R F+ A + V + DG L + Sbjct: 415 REPDLLVAFGGHAMAAGVTLNTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNR 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + L + W G R QL V A Sbjct: 532 TEPLPASAL---------LAYRLVADTWNGVTRVQLIVEHA 563 >gi|300173020|ref|YP_003772186.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc gasicomitatum LMG 18811] gi|299887399|emb|CBL91367.1| single-stranded-DNA-specific exonuclease RecJ [Leuconostoc gasicomitatum LMG 18811] Length = 654 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 178/581 (30%), Positives = 281/581 (48%), Gaps = 26/581 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72 S W L Q +T K I + A V+ + ++ + A +L PSI L DP Sbjct: 2 SQNNWHILP-QPTEKTVRQLTTKLNIDPLTATVVAQKGFITPEAAYQYLQPSIDQLH-DP 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++L D DKA R+ +A + EKI+++GDYD+DG S A+M+ L + YIP+R Sbjct: 60 MLLHDMDKAFERLTEAAFGGEKIVVYGDYDLDGMTSTAVMVEALEVLGADVTAYIPNRFK 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN + ++ I EGAQ+I+TVD G + ++A+ YA +QG+DVI+ DHH++ AY Sbjct: 120 DGYGPNIDVYKRLIAEGAQIIVTVDNGVSGHEAVAYAMSQGVDVIITDHHEMPPTLPEAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P D L GV F V + + + +LDLVAL + D Sbjct: 180 AIVHPRHPDGHYPFDDLSGVGVAFKVAQALLT--DGQSITDKSELPTEMLDLVALGEIAD 237 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310 +V L NR V GL PGL AL++ + PI +E + + I P +NA GR Sbjct: 238 MVSLTDENRTLVSWGLKQINDNPRPGLVALLKNAGQMVNQPIISETVSFKIAPRLNAVGR 297 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G++ L LL+S DS E +A +++ +N R+ + A+ L+ V Sbjct: 298 LGDAQLALDLLLSQDSDEATEIASQIEAINAQRQEFVEEVFGAAKQIALSDKHA--NDQV 355 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV G+ WH GI+G++A+RL E +P +S + G GSGR+ FD+ +++ Sbjct: 356 LVVAGENWHQGILGIVASRLVELLHKPVIVLSLID-GIYKGSGRTYNNFDLYQLMG--QY 412 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 GGHA A GL + N L + VP + ++ +L S + I Sbjct: 413 RSFYDTFGGHASALGLAISPENLSALREQLAVLPTLDVPEIS----VAVNMMLPVSKMAI 468 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 + + L P+G GN P F ++ + HL++T +Q ++A+ F Sbjct: 469 PVYEGLTLLEPFGTGNVQPTFGVQEPTIEKAVTMGSTNQHLKLTLANQ----IEAVGFNH 524 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + +NY+RG KR QL + D Sbjct: 525 PEW----TTIVAHPANISFVATMGLNYFRGKKRLQLLLTDV 561 >gi|206560550|ref|YP_002231315.1| putative single-stranded-DNA-specific exonuclease [Burkholderia cenocepacia J2315] gi|198036592|emb|CAR52489.1| putative single-stranded-DNA-specific exonuclease [Burkholderia cenocepacia J2315] Length = 565 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 185/581 (31%), Positives = 275/581 (47%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARQPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + HL GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT++ N R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L V L + W G R QL V A+ Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564 >gi|303257508|ref|ZP_07343520.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderiales bacterium 1_1_47] gi|331000228|ref|ZP_08323912.1| single-stranded-DNA-specific exonuclease RecJ [Parasutterella excrementihominis YIT 11859] gi|302859478|gb|EFL82557.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderiales bacterium 1_1_47] gi|329572394|gb|EGG54047.1| single-stranded-DNA-specific exonuclease RecJ [Parasutterella excrementihominis YIT 11859] Length = 572 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 195/575 (33%), Positives = 283/575 (49%), Gaps = 30/575 (5%) Query: 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 N A+T + P+ +AR L R+V+ D+ M P L +C +A I Sbjct: 10 DRNVVQALTNR-GFPEPLARALAARHVTSPSDLDYEFKE----MLSPWDLKNCREAGEAI 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK 144 AI+ +KI+I GDYD DGA +V++ + L N + IPDR DGYG +P L+++ Sbjct: 65 ADAIWKQKKIVIIGDYDCDGATAVSVGILGLQALGAFNVSYLIPDRDKDGYGLSPQLVDR 124 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 GA+LIITVD G +S A+++A GI+ +V DHH E P +VNPN+ D Sbjct: 125 AAAAGAELIITVDNGISSVAAVEHAKTLGIEAVVTDHHLPGDEI-PDTLVVNPNQRGDTF 183 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRA 262 L GV+F VL+ + LR P +L L+DLVAL TV DVVPL NR Sbjct: 184 PSKSLAGVGVIFYVLIAVRSALRAKGAYPNGKQPNLQHLIDLVALGTVADVVPLDRNNRI 243 Query: 263 YVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V KGL R + L + I+A +LGY++GP INA GR+ N G Sbjct: 244 LVSKGLDSIRAGKMQPGVSALLSVAGKNAHRISANDLGYILGPRINAAGRLDSINKGVEC 303 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L S D A +LD +N RR E +M A + Q + ++ IV++GD WH Sbjct: 304 LTSYDYNTALFYAKELDQINAERRNREVSMQSDAI--LSLQTISVDDSNSIVLKGDDWHA 361 Query: 381 GIVGLLAARLKEKFGRPSFAISFEE---DGKGIGSGRSIEGFDIGKMVSFAVE--EGILV 435 GI+GL+A+R+KE+ RP A + E + GSGRSI G + + + G+++ Sbjct: 362 GIIGLVASRIKEQTYRPVIAFAPSEENGEHVLKGSGRSIPGIHLRDALDRVSKLSPGLIL 421 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGHAMAAGLT+ + F + F + + + DG L AS NI L++ Sbjct: 422 KFGGHAMAAGLTIRKDAFDEFKELFARAVKELSDPEMFERNIVTDGELRASDFNIELVEA 481 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 + +G P P+FA K+ S RV+ HL+++ E D +QAI FR Sbjct: 482 IRK-HVWGQAFPEPLFANQ-FKVLSQRVLKDQHLKLSLEV-DGREIQAIWFRH------- 531 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + L +N +RG + QL + Sbjct: 532 --KRELPPTVRLAYKLDINDFRGRQSVQLIIEGME 564 >gi|78066891|ref|YP_369660.1| RecJ exonuclease [Burkholderia sp. 383] gi|77967636|gb|ABB09016.1| exonuclease RecJ [Burkholderia sp. 383] Length = 565 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 189/582 (32%), Positives = 276/582 (47%), Gaps = 32/582 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 V+ LA +H + ++AR+ +R V S + ++ L+P P L Sbjct: 5 VTRPVAPADAEVLA---RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAASLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254 N+ + HL GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 177 NQPGCVFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312 L G NR V +GL R A + R TA +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I Sbjct: 297 DMSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 355 LFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGKRVKGSGRSIPGFHLRDALDLVSK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E ++V GGHAMAAGLT++ N R F+ A + V + DG L + Sbjct: 415 REPDLIVAFGGHAMAAGLTLDTENVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNH 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 PL E + V L + W G R QL V A+ Sbjct: 532 TE-PLPESAL--------VAYRLVADTWNGVTRVQLIVEHAA 564 >gi|82751234|ref|YP_416975.1| single-strand DNA-specific exonuclease [Staphylococcus aureus RF122] gi|82656765|emb|CAI81194.1| single-strand DNA-specific exonuclease [Staphylococcus aureus RF122] Length = 757 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 159/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W + E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLIKPTEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|293606106|ref|ZP_06688471.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter piechaudii ATCC 43553] gi|292815561|gb|EFF74677.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter piechaudii ATCC 43553] Length = 566 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 181/578 (31%), Positives = 273/578 (47%), Gaps = 27/578 (4%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 L + A I + I ++AR+ R V+ PS L+P P LT Sbjct: 6 LTTRPADLEACRILEASGIHPLLARLWAARGVTHPDQTRLAWPS---LLP-PAGLTHSAH 61 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 AA + AI + +K++I DYD DGA + A+ +R LS + + +P+R GYG +P+ Sbjct: 62 AAGVLADAIQSGKKLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPA 121 Query: 141 LME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 ++E + + +IITVD G S D + A + GI V++ DHH A A+VNP Sbjct: 122 VVELAVRHRSGKPDIIITVDNGIASVDGVAAANDAGIGVVITDHHLPGDTLPDALAIVNP 181 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 N+ +L GV+F +++ + LR+ + L +L DLVAL TV DVV Sbjct: 182 NQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVK 241 Query: 256 LIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R PGL+AL +LG+ +GP INA GR+ + Sbjct: 242 LDANNRLLVTQGLQRMRSGRLQPGLRALFAVAGREPRSANGFDLGFALGPRINAAGRLAD 301 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG L +DD + +A +LD +N+ RR +E+ M EQA + + + V Sbjct: 302 MSLGIACLTTDDEAQALEMARELDNINRERRTIEAEMREQAL--AAMEEPSASAGATVCV 359 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEE 431 WH G+VGL+A+RLKEKF RP+ A + D + GSGRSI + + Sbjct: 360 FDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDALDLVSKRHP 419 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ K GGHAMAAGLT+ R +F F + PV + DG L + N Sbjct: 420 NLIRKFGGHAMAAGLTLGRADFPAFAPAFDAAVRELTGRDTFEPVIETDGSLESGYANAE 479 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 + +L+ +GAG P+F +++ R+V HL+++ E + + AI F Sbjct: 480 VAGLLQQ-QVWGAGFAAPLFLDE-FTVRNQRLVGEKHLKLSLE-RGHQRFDAIWFGHD-- 534 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 QS + + L N W G QL + A Sbjct: 535 -------QSLPEHIQAAYRLEQNVWNGMVSVQLVIEHA 565 >gi|323440811|gb|EGA98520.1| single-strand DNA-specific exonuclease [Staphylococcus aureus O11] gi|323442840|gb|EGB00465.1| single-strand DNA-specific exonuclease [Staphylococcus aureus O46] Length = 757 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 159/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W + E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLIKPTEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEVKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSETTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|226227295|ref|YP_002761401.1| single-stranded-DNA-specific exonuclease [Gemmatimonas aurantiaca T-27] gi|226090486|dbj|BAH38931.1| single-stranded-DNA-specific exonuclease [Gemmatimonas aurantiaca T-27] Length = 599 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 177/579 (30%), Positives = 291/579 (50%), Gaps = 21/579 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RWV+ Q + +P+ V R+LVNR +D AK FL P + + P L Sbjct: 20 RWVTAP-QPAHEAVAQLCSALLLPESVCRLLVNRGYADVDAAKRFLRPRLEHI-ESPWRL 77 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134 D ++A RI +A+ + E I + GDYDVDG +S AL+ R L + ++P+R+ DG Sbjct: 78 HDAERAVTRIAEAVRSQETIFVHGDYDVDGMSSTALLTRVLRDLGAHHVVPFVPNRLTDG 137 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 Y P+ + GA+L+IT DCG++++ A+ GIDVIV DHH PA+A+ Sbjct: 138 YDLGPAGVRAAQAAGARLVITCDCGTSAHAAVAELMTAGIDVIVTDHHLPGHGMPPAFAV 197 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 NP S L A GV + + + + + + LDLVALAT+ DV Sbjct: 198 CNPRHPACQSADKDLAAVGVAYKLALALCEVFAVSPNIAHRQ-----LDLVALATIADVA 252 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL G NR +V GL + +PGL+AL+ + P+TA +G+++ P +NA GRI + Sbjct: 253 PLRGENRVFVRYGLKLLAETTHPGLRALMRSSGLDAKPLTAGRVGFVLAPRLNAAGRIAD 312 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LG +LL+++ E ++A +L+ LN+ R+ ++ +L+ A +V + ++ V+ Sbjct: 313 ARLGLQLLLAEREDEANVIARELEELNRARQELDRTVLDDAMRQV--ESPAMRDQVGFVL 370 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+R+ E RP+ ++ EDG G GSGRSI FD+ + + Sbjct: 371 SREGWHAGVIGIVASRIVEHTARPAVLVA-VEDGVGKGSGRSISAFDLHAGLGAC--ADL 427 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH AAGLT++ + F A + A P ++D ++ AV L Sbjct: 428 FQRYGGHRAAAGLTMDAAQLPAFAERFDAVARAQLSADDLVPELRVDLDVSIHAVGEELE 487 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++ P+G GNP+P F +L + R V L+++ ++ TL+ I + + Sbjct: 488 KLVRHFEPFGIGNPSPTFRADGVRLAAPTRRVGTDGLRISVDTTGG-TLEGIGWGLA--- 543 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + L + +RG R QL++ D Sbjct: 544 -ARMPRLDVSQAYDMAFRLERDEYRGVSRLQLKLTDVRV 581 >gi|253732292|ref|ZP_04866457.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724081|gb|EES92810.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 757 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 286/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA++ Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAII 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--IEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|283470912|emb|CAQ50123.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ST398] Length = 757 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 159/588 (27%), Positives = 285/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKAIDRIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSILPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|325479379|gb|EGC82475.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus prevotii ACS-065-V-Col13] Length = 576 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 181/589 (30%), Positives = 280/589 (47%), Gaps = 30/589 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W +E I I + A +L NR++ ++NPS+ L +P L Sbjct: 3 NWFIYNKRENYINNSKIE---GITKLDALILGNRDIVDPKLVDMYINPSLNKLH-NPYDL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +A I++ I + +I IFGDYD DG ASV ++ L N + IP R+ +GY Sbjct: 59 PDMTEAIDIIIETIQENGEIRIFGDYDQDGIASVMTLLDGLLFYYDNISYDIPHRVDEGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + + +K I + L+IT D G T +D ++ GI VIV DHHQ++ E+ Sbjct: 119 GISSGMSDKAIEDKVSLVITCDNGITGFDQVKKLKENGIKVIVTDHHQIEKEDKDGWVDQ 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ++NP+RLD LC AGV F ++ +Y L D L SLL+ VA Sbjct: 179 ILPDADCVINPHRLDSKYPFKDLCGAGVSFKLMQALYMKLDGD-----FEYLASLLEYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCD+V L NR +V++GL +K L+E + I LG++IGP +N Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRLNITEKYAIKVLLEEAGWNKQIDEYTLGFIIGPLMN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L LLI +D + LA +L LN R+ + L++ + V D Sbjct: 294 ATGRLSTAKLAIELLIEEDMDRIRQLAKELVELNNTRKNLTQEGLDKCDKLVKDNSFD-- 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMV 425 ++ VIVV I G++A R+KEK+ RP+ ++ EDG GSGRSIE +++ K + Sbjct: 352 KSDVIVVYEPSIDESICGIVAGRIKEKYYRPTIVLTKSAEDGILKGSGRSIETYNMHKAI 411 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 E L GGH MA GL+++ F + + V ID +N Sbjct: 412 --LPFEDNLESFGGHPMACGLSIKDDMVDDFRHFLNS--QSKLTKNDLEEVINIDTQINI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAI 544 S +++ + L+ P+G NP PVFA + + I+++ M Q+ AI Sbjct: 468 SKLSLEFAEKLDKYRPFGKDNPRPVFANKSVDIADIQMIGKDKKTMRINLHQNGRYFNAI 527 Query: 545 AFRVYGTPLG---EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F +F +G ++ + + VN +RG+K QLR++D Sbjct: 528 KFNAVDDYEYLKLKFNNNIKGNKIDIVYYPDVNEFRGNKNLQLRLIDIR 576 >gi|86608310|ref|YP_477072.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556852|gb|ABD01809.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-2-3B'a(2-13)] Length = 890 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 174/643 (27%), Positives = 290/643 (45%), Gaps = 74/643 (11%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPD 71 I RW+ A ++ + I I+A++L+NR +S A + +L P L P Sbjct: 4 IPAQRWLFHP--VDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPP 61 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D A + AI E I I GDYD DG S AL++R L + IP R+ Sbjct: 62 SRDFADLPLAVDLLDGAIRRQEPIAICGDYDADGMTSTALLLRALQD--APVHYRIPSRM 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N ++++ EG +LI+TVD G ++++ +Q A G+ VIV DHH + + PA Sbjct: 120 TEGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKALGLTVIVTDHHDLPPQLPPA 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP +L S + GV +L+ + R D + L+L + T+ Sbjct: 180 DAILNPKQLPVSSPYRGMAGVGVAYLLAQALAER-RGDGHLQRVA-----LELFTVGTIA 233 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAG 308 D+ PL G+NR +V +GL + G++AL++ + + + E +G+ +GP INA Sbjct: 234 DLAPLTGVNRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAV 293 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GRIG + +G +LL +DD + E LA + + LNQ R+ M + +A ++ Q D+QQ Sbjct: 294 GRIGRARMGIQLLTTDDPLQAEKLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQE 353 Query: 369 SVIVV---EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-SIEGFDIGKM 424 V+ + RWH G++G++A+RL E+FG P F S G+ GS R I FD+ + Sbjct: 354 RVLTILGSPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSARQGIPEFDVFQA 413 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + F + + K GGH A G ++ ++ + ++FA + P+ +ID ++ Sbjct: 414 LEFC--KDLFTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVS 471 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD----- 537 S + + L L+ P G GNP PVF N ++ + HL++ Sbjct: 472 LSDLTLDLYRELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQR 531 Query: 538 --------------SETLQAI---AFRVYGTPLGEFLMQ--------------------- 559 + A+ ++ G LG L Sbjct: 532 SHGLRATRTESSCPGRSDSAVKTSSYDTDGLSLGNALGNTLANGSAVGSTNPRPQRPLWA 591 Query: 560 ---------SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ V L W+G + +L ++ P + Sbjct: 592 IRWRGAETHPLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQ 634 >gi|329767005|ref|ZP_08258533.1| hypothetical protein HMPREF0428_00230 [Gemella haemolysans M341] gi|328837730|gb|EGF87355.1| hypothetical protein HMPREF0428_00230 [Gemella haemolysans M341] Length = 753 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 149/577 (25%), Positives = 264/577 (45%), Gaps = 29/577 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 + W+ E + + + I VA++L R+++ K + + DP + Sbjct: 5 YNWIYPTYDESFIKE---IESYNISKNVAKILNARSITDMSSVKKYFSDEYEEGY-DPFL 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA RI +AI N EKI+++GDYD DG S L++ L N + YIP+R +G Sbjct: 61 MHDMQKAVDRINEAIENEEKILVYGDYDADGITSTVLLVETLISLGANVSSYIPNRFEEG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN K I G LIITVD G + + A G DVI+ DHH+++ AYA+ Sbjct: 121 YGPNKEAFTKIIESGISLIITVDNGIAGVEEVDLANELGCDVIITDHHKIQDTIPNAYAI 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + L GV F + + I LLDLVA+ T+ D+V Sbjct: 181 IHPEHPEGNYPFKKLAGVGVAFKLAHALLEIFPD-----------FLLDLVAIGTIADMV 229 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 + NR +V +GL + GLK L+E NI + + + +G+ IGP +N+ GR+ + Sbjct: 230 SITDENRIFVKQGLELINEDPRIGLKMLLELSNIDTKVDEQTIGFYIGPKLNSIGRMDSA 289 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LG L+++D++ +LA +++ N R+ + +++ ++ +++ Sbjct: 290 KLGLSFLMAEDAETARVLAEQIEKYNIERKQVTEDIVKDVIDQIENSSKKDNN---VLMI 346 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 +H G++G++A+ + EK+ RP F ++ +E G GS RSI F+I ++ + Sbjct: 347 SGDYHEGVLGIVASNIVEKYQRPVFIMNNKE-GILKGSARSIFDFNIYTAMNK--ISDLF 403 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG + + +N ++ +F KID V + ++ ++ Sbjct: 404 LAFGGHTLAAGFSFDEINLDKIQEFLNCEYEKFKKNNELKSTKKIDIVTSLEEISYQFLN 463 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 LE P+G P N + + +L++T + L+ I F Sbjct: 464 SLEILKPFGMDFEKPTVLLENAMVLNKSYFGSDNQYLRLTIADEVGN-LECITF----KD 518 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F + + + + N + G + Q ++D Sbjct: 519 SVAFEKVEKNDIIDLLCTIDKNNFNGRTKLQAHIIDI 555 >gi|195978355|ref|YP_002123599.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975060|gb|ACG62586.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 736 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 164/592 (27%), Positives = 274/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S ++W + + Q + A+++ +R V + + FL + L DP Sbjct: 4 SKYQWTIADKEPD-AGFFKLAQAKGLSQTAAKLIYDRGVHTEEELTSFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI QAI E+I+++GDYD DG + +++ L +Y+P+R Sbjct: 62 YLLNDMEKAVHRIRQAIEGFERILVYGDYDADGMTAASIVKETLEMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G + ++A+ +A QG+DVIV DHH + +E A Sbjct: 122 DGYGPNQSVYKYFIEQEQVSLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHSLPAELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P L GV F + + + + LDLVA+ T+ Sbjct: 182 FAIIHPEHPAAAYPFQKLAGCGVAFKLASALLETVP-----------VDFLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L++ + E+ +G+ + P +NA GR Sbjct: 231 DMVSLRGENRILVKNGLAVLKETERLGLQELMKLSEVDLTHFDEDVIGFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +EL LA+ + N+ R+ + + QA A V V Sbjct: 291 LDDPNPAIDLLTGFDDEELHELALMISSKNEERKALVQEIFAQAMAMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E+ G+ ++ E G GS RS+E +I + Sbjct: 345 QVLAKSGWHPGVLGIVAGRIMEEIGQTVLVLTIAE-GLAKGSARSLESINI--FEALNSN 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH AAG+T+ L + ++ ++ L+ A++I Sbjct: 402 RSLFTAFGGHEGAAGMTLPSDRLEELSELLCQYVAAKGHDGQEKNTLLLNDELDLEALSI 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L P+G N PVF + ++ R + HL+ S+ + +AF Sbjct: 462 DSLNKLLLLAPFGMDNKKPVFYLKDFTIKQARTIGQQQSHLKFKV-SKGAVEADVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L + QS+G + + L +N+WRG QL ++DA F + Sbjct: 521 G--HLIQEYQQSQG--LELAVSLAINHWRGHTSLQLMLVDARVTGVQLFDIR 568 >gi|225868314|ref|YP_002744262.1| single-stranded-DNA-specific exonuclease [Streptococcus equi subsp. zooepidemicus] gi|225701590|emb|CAW98834.1| putative single-stranded-DNA-specific exonuclease [Streptococcus equi subsp. zooepidemicus] Length = 736 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 163/592 (27%), Positives = 273/592 (46%), Gaps = 32/592 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S ++W + + Q + A+++ +R V + + FL + L DP Sbjct: 4 SKYQWTIADKEPD-AGFFKLAQAKGLSQTAAKLIYDRGVHTEEELTSFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +KA RI QAI E+I+++GDYD DG + +++ L +Y+P+R Sbjct: 62 YLLNDMEKAVHRIRQAIEGFERILVYGDYDADGMTAASIVKETLEMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G + ++A+ +A QG+DVIV DHH + +E Sbjct: 122 DGYGPNQSVYKYFIEQEQVSLIITVDNGVSGHEAIAFAQAQGVDVIVTDHHSLPAELPEV 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P L GV F + + + + LDLVA+ T+ Sbjct: 182 FAIIHPEHPAAAYPFQKLAGCGVAFKLASALLETVP-----------VDFLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGR 310 D+V L G NR V GL V + GL+ L++ + E+ +G+ + P +NA GR Sbjct: 231 DMVSLRGENRILVKNGLAVLKETERLGLQELMKLSEVDLTHFDEDVIGFKLAPQLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + N LL D +EL LA+ + N+ R+ + + QA A V V Sbjct: 291 LDDPNPAIDLLTGFDDEELHELALMISSKNEERKALVQEIFAQAMAMVDL------DKPV 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ WHPG++G++A R+ E+ G+ ++ E G GS RS+E +I + Sbjct: 345 QVLAKSGWHPGVLGIVAGRIMEEIGQTVLVLTIAE-GLAKGSARSLESINI--FEALNSN 401 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + GGH AAG+T+ L + ++ ++ L+ A++I Sbjct: 402 RSLFTAFGGHEGAAGMTLPSDRLEELSELLCQYVAAKGHDGQEKNTLLLNDELDLEALSI 461 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ++ L P+G N PVF + ++ R + HL+ S+ + +AF Sbjct: 462 DSLNKLLLLAPFGMDNKKPVFYLKDFTIKQARTIGQQQSHLKFKV-SKGAVEADVLAFGQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 L + QS+G + + L +N+WRG QL ++DA F + Sbjct: 521 G--HLIQEYQQSQG--LELAVSLAINHWRGHTSLQLMLVDARVTGVQLFDIR 568 >gi|254433416|ref|ZP_05046924.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus oceani AFC27] gi|207089749|gb|EDZ67020.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosococcus oceani AFC27] Length = 548 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 169/558 (30%), Positives = 268/558 (48%), Gaps = 25/558 (4%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 + R + A D L+ ++ L P P +L++ A +++A+ +I++ D+D DG Sbjct: 1 MYGARGI---KAPDELDYTLERL-PSPWLLSNIKMAVTLLMEALVRDWRILVVADFDADG 56 Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLM-EKFINEGAQLIITVDCGSTSY 163 A S A+ +R L + +P+R + GYG P+++ E LIITVD G +S Sbjct: 57 ATSCAVAVRALRLMGAHKVDYLVPNRFIHGYGLTPAIVAEAMARGQPDLIITVDNGISSL 116 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 +Q A I V++ DHH A A+VNPN +D L GV+F V++ + Sbjct: 117 AGVQAARAANIRVLITDHHLPGISLPAANAIVNPNLPNDPFPSTCLAGVGVIFYVMLALR 176 Query: 224 RILRQDNKV----PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 LR+ L LLDLVAL TV DVVPL +NR V +GL R+ Sbjct: 177 AHLREQGWFIRRDEQEPALAPLLDLVALGTVADVVPLDQINRILVAQGLARIRQSRCCAG 236 Query: 280 KA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 + +T +LG+ +GP +NA GR+ + +LG L++D + + A +LD Sbjct: 237 IQALVACARRPLETLTTSDLGFAVGPRLNAAGRLEDMSLGIACLLTDSLELAQQQANQLD 296 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV--IVVEGDRWHPGIVGLLAARLKEKFG 395 LN+ RR +ES M EQA + ++ + + + WH G++GLLAAR++E+ Sbjct: 297 GLNRERREIESTMQEQAVTHLENLVFQGEERAPLGYCLFDESWHQGVIGLLAARIRERVY 356 Query: 396 RPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNF 453 RP A + + + GS RSI G I + +L K GGHAMAAGL++ R + Sbjct: 357 RPVIAFAPHDSEELKGSARSIPGLHIRDALDRVATCYPDLLTKFGGHAMAAGLSLRRGHL 416 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 F + ++ V DG + ++ + + L + GP+G G P P+F Sbjct: 417 EPFRVAFLEVLETLLDKEALEDVILSDG--SLEQWDLEMAETLRNGGPWGQGFPEPLFDG 474 Query: 514 PNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 ++ R+V AHL++T + D + L+ IAFR + G ++ + L Sbjct: 475 -VFRVAGFRIVGEAHLKLTLTTLDGRQQLEGIAFRCLPPD-----GFALGIKIRLAYRLD 528 Query: 573 VNYWRGSKRCQLRVLDAS 590 VN +RGS+ QL V Sbjct: 529 VNIYRGSRTAQLMVEHLE 546 >gi|298694915|gb|ADI98137.1| single-strand DNA-specific exonuclease [Staphylococcus aureus subsp. aureus ED133] Length = 757 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 284/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W + E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLIKPTEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDSLQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A + + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSETTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|300088080|ref|YP_003758602.1| single-stranded-DNA-specific exonuclease RecJ [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527813|gb|ADJ26281.1| single-stranded-DNA-specific exonuclease RecJ [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 559 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 169/582 (29%), Positives = 277/582 (47%), Gaps = 30/582 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 G RW + + + P ++ARV+ NR ++ A+ FL R L+ DP+ Sbjct: 3 GARWQV----ADGAVPEDLGRAY--PGLMARVMANRGITTATEAELFLAGDAR-LVGDPM 55 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +L D A RI +AI E ++++GDYD DG + A+M+ L NA+ YIP R+ + Sbjct: 56 LLPDIQPAMTRIYRAILGHEAVVVYGDYDTDGITATAIMVTGLKRLGANASPYIPHRLSE 115 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG ++K EG L+++VDCG + ++ A GIDVI+ DHH E PA A Sbjct: 116 GYGLKTDALKKMAAEGVSLVVSVDCGVNAVAEVKTAAKMGIDVIITDHHLPGHELPPAVA 175 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R D L AGV F V+ ++ + + L+L AL T+ D+ Sbjct: 176 VINPKRPDSEYPFTELSGAGVAFKVVEALFHGMGKPLPQ------EHFLELTALGTIADI 229 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIG 312 +PL G NR V +GL +PGL +I + + AE++ + + P +NA GR+ Sbjct: 230 MPLTGENRYLVKEGLKHLNDHPSPGLTEIINLSRLRTGQLDAESISWQVAPRLNAAGRLN 289 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + G LL + + E LA +L+ N R+ + + +A +VL + S++ Sbjct: 290 HAIAGYNLLTATSAGEAAELAAELEAQNIERQRLTLLYVNKARDRVLAE----PLKSLLF 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 +E + GI+GL+A RL ++F RPS + + + S RSI GF+I + Sbjct: 346 IEDEECPQGILGLVAGRLSDEFYRPSIVVRRDGE-LATASCRSIPGFNITAAIDRC--GH 402 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGHA AAG +++ + L + A + +L PV ID + L Sbjct: 403 LLAHYGGHAQAAGFSLKPKDLPELAMMLGEIAERELASLDLQPVLHIDAEAMLKELGGGL 462 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 ML+ P+G GN P+F R + HL+M +Q +AIAFR Sbjct: 463 FQMLQRLAPFGQGNRPPLFVSRCVTAAGYRTIGASGDHLKMRL-TQGGVVWEAIAFRQAA 521 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +++ + + +L ++ + G + +L ++D +P Sbjct: 522 R-----MLEILPDPLDIVYNLEMDRFNGRETLRLNIVDFAPS 558 >gi|323464273|gb|ADX76426.1| single-strand DNA-specific exonuclease RecJ [Staphylococcus pseudintermedius ED99] Length = 761 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 148/589 (25%), Positives = 276/589 (46%), Gaps = 25/589 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 S F+W + ++ ++ + +++ + ++ +L ++ + + + + M +P Sbjct: 4 SKFQWQTDTNRQSMDDV--LVEQYKLTPLMRYILESKGYTEATQLAQVLSASKDNMHNPS 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +++D DKA +RI AI N EKI+++GDYD DG S +M++ L YIP+R + Sbjct: 62 LMSDMDKAVKRIHTAIQNQEKILVYGDYDADGVTSTTIMVKTLQQLGAIVGWYIPNRFTE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGP+ + +EG LIITVD G + ++ N G+DVIV DHH++ AYA Sbjct: 122 GYGPSEPAFKNAYDEGVSLIITVDNGIQGHTEIEMVQNLGVDVIVTDHHEIGDTLPAAYA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D LC AGV + + VP F + + T+ D+ Sbjct: 182 IVHPMHPDYDYPFISLCGAGVALKLAQSLL------GDVPNIFWI-----YAMIGTIADL 230 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 V L NR V GL + + A++ + + +T E +G++IGP +NA GR+ + Sbjct: 231 VSLTDENRFIVQHGLQLLNESPPVSIAAILNQAQFNDTVTEETIGFIIGPRLNAVGRLDD 290 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + LL++DD++E LA +++ N R+ + ++++A + +V+ Sbjct: 291 AALAAELLMTDDAEEALFLAEQVEHFNVERKDIVQTIVDEAMVMAEDAIQAGE--HFLVL 348 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+R+ E F P+ ++ + + G S + + + ++ + Sbjct: 349 AKEDWHEGVLGIVASRIVETFHLPTMVLN-IDHEQQHAKGSSRSITQVSMFEALSSQQTL 407 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH MAAGLT+ L + + + P+ K+D ++ + + I Sbjct: 408 ISKFGGHHMAAGLTLPIDQVSALREGLNDWMRTHIDTTALQPIQKVDVTIDVGHITVEQI 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 +E P+G P+ + + + HL+MTF Q+ LQA+ + Sbjct: 468 QSIERLRPFGTDFKRPIIQVNGLTVLQSKGIGQQQAHLKMTFVEQN---LQALFWNQGAL 524 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + VTG L +N W G++ Q+ + D E + Sbjct: 525 S----SELMPNQHVDVTGELQINEWNGNRTAQMVLTDMKSNERQILDYR 569 >gi|221214767|ref|ZP_03587736.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans CGD1] gi|221165306|gb|EED97783.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia multivorans CGD1] Length = 565 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 182/581 (31%), Positives = 272/581 (46%), Gaps = 30/581 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + A A+ +H + ++AR+ +R V S + ++ L+P P L Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGVQSPADIET----ALARLVP-PTELKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + AI ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAAALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S ++ A +GIDV++ DHH PA A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLITDHHLPGEALPPARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR L LLDLVAL TV DVV Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRCRGAFASKAAEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIG 312 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG LI+DD LA +LD +N+ RR +E+ M +QA A + D A I Sbjct: 297 DMSLGIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACSIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 355 LFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E +LV GGHAMAAG+T++ N R F+ A + V + DG L + Sbjct: 415 REPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 475 TPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNR 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + L + W G R QL V A Sbjct: 532 TEPLPASAL---------LAYRLVADTWNGVTRVQLIVEHA 563 >gi|302333309|gb|ADL23502.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus JKD6159] Length = 757 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 159/588 (27%), Positives = 284/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLKENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|253996978|ref|YP_003049042.1| single-stranded-DNA-specific exonuclease RecJ [Methylotenera mobilis JLW8] gi|253983657|gb|ACT48515.1| single-stranded-DNA-specific exonuclease RecJ [Methylotenera mobilis JLW8] Length = 566 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 163/588 (27%), Positives = 273/588 (46%), Gaps = 34/588 (5%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 SIS + Q + +++R+L R VS + L+P Sbjct: 2 TSISQRN--------VPAAIVQSLQASGVSPLMSRLLSARGVSDIAQTSI---HLSALLP 50 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P LT A+ + +AI ++K+++ GDYD DGA + A+ ++ L N + +P+R Sbjct: 51 -PQQLTHNQAMAKLLAEAIQANKKLLVVGDYDADGATATAVAVKGLRLFGANVDFLVPNR 109 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 GYG P +++ + +I+TVD G S D + A GI V++ DHH ++ Sbjct: 110 FEYGYGLTPEIVKLAATQAPDVIVTVDNGIASVDGVATANAMGIQVLITDHHLPGAQTPE 169 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALA 248 A +VNPN+ +L GV+F L+ + LR+ +L LLDLVAL Sbjct: 170 AACIVNPNQHGCTFPSKNLAGVGVMFYCLLGLRAELREQGAYQSSAEPNLTELLDLVALG 229 Query: 249 TVCDVVPLIGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 TV D+V L NR V +GL R + L + A++LG+ +GP +N Sbjct: 230 TVADLVKLDENNRILVEQGLRRIRAGACSHGVSALLRVAGREPAKAAAQDLGFYVGPRLN 289 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + LG + L+++ ++ +LA +L LN+ RR +E+ M E A V I Sbjct: 290 AAGRLDDMTLGIQCLLAETEKDAVVLAQQLHDLNKQRRSIEADMQESAN--VSLDEIAIA 347 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 I + WH G++G+LA+R+KE+ RP A + G GSGRSI G + + Sbjct: 348 DQYSISIYEPDWHQGVIGILASRIKERHHRPVIAFADGGSGLLKGSGRSIAGLHLRDALD 407 Query: 427 FA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +++K GGHAMAAGLT++ +F F+ +++ + V ++DG L+ Sbjct: 408 LLSKHLPDLILKFGGHAMAAGLTIKAEDFNVFKMGFEAVVKSLLTEVDLEAVLEVDGSLS 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE---SQDSETL 541 + + A+ LE+ +G G P P+F ++ + R++ HL+++ S + + Sbjct: 468 SGEMTYAVAQTLEN-QVWGQGFPPPLFYDE-FEVVNQRILAEKHLKLSLRALASPSAAVI 525 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AI F ++ L N + G ++ QL + Sbjct: 526 DAIYFNQTEF---------LDSQIQAAYQLQTNSYNGVQKVQLNIRHV 564 >gi|194289275|ref|YP_002005182.1| ssdna exonuclease, 5'--> 3'-specific, mg-dependent [Cupriavidus taiwanensis LMG 19424] gi|193223110|emb|CAQ69115.1| ssDNA exonuclease, 5'--> 3'-specific, Mg-dependent [Cupriavidus taiwanensis LMG 19424] Length = 567 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 171/582 (29%), Positives = 259/582 (44%), Gaps = 27/582 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + Q A A+ + +AR+L R V+ L + L+P P + Sbjct: 3 RIAIRQYSPEHASALA-ATGLHPTLARILAARGVARA---AELATDLPELVP-PAAMKGI 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI ++++I DYD DGA + A+ +R L +P+R GYG Sbjct: 58 GHAAAYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGARVEYIVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++ + +I+TVD G S D + A GIDV+V DHH +E A +VNPN Sbjct: 118 PEIVALAAKQNPDVIVTVDNGIASVDGVAAANALGIDVVVTDHHLPGAELPQAAVIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPL 256 + +L GV+F VL+ + LR+ L +LLDLVAL TV DVV L Sbjct: 178 QPGCEFPSKNLAGVGVMFYVLLALRAELRRRGVYTQQTQPPLQTLLDLVALGTVADVVKL 237 Query: 257 IGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 NR V +GL R R ++ +LG+ +GP +NA GR+ + Sbjct: 238 DTNNRILVAQGLRRMRAGRMQPGVAALFRAAGREAARANTFDLGFGLGPRLNAAGRLADM 297 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT----QCDDIQQASV 370 +LG L++DD+ +A +LD +N+ RR +E+ M ++A + Sbjct: 298 SLGIECLLTDDANRAWEIAQELDSMNRERRDIEAGMQQEALRILEQPMAGLAGADASRFT 357 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA-- 428 + V D WH G++G++A+RLK+KF RP+ + +D GSGRSI GF + + Sbjct: 358 VSVFNDTWHQGVIGIVASRLKDKFHRPTITFAPGDDTTVKGSGRSIPGFHLRDALDLVSK 417 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 G+L+K GGHAMAAGLTV F + F+ + V + DG + Sbjct: 418 RHPGMLLKFGGHAMAAGLTVRAERFAEFQEAFEAVGREWLTDDQLARVIETDGDIEDQCF 477 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + + +LE +G G P P F + V+ HL++ + S+ AI F Sbjct: 478 SPEFVSLLEQ-QVWGQGFPAPTFCGE-FDVLRQSVLKGKHLKLQL-GRGSQRFDAIWFNH 534 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S G V L N + G R QL + A Sbjct: 535 AD---------SLGASAQVAYRLDNNTFNGVTRVQLVIEHAQ 567 >gi|291166509|gb|EFE28555.1| single-stranded-DNA-specific exonuclease RecJ [Filifactor alocis ATCC 35896] Length = 769 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 159/578 (27%), Positives = 281/578 (48%), Gaps = 27/578 (4%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W+ + I + + ++ ++ NR + + ++FLNP DP ++ Sbjct: 5 WMERNDKTYIGEVD---EGLGL---LSAMIKNRGI--EDVEEFLNPD-EDSFIDPYLMKG 55 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 D+ R+ A+ + EKI+IFGDYDVDG +S +++ R+ +YIPDR +GYG Sbjct: 56 MDETVTRLQFAMAHKEKIVIFGDYDVDGVSSTSILFRYFEEIGYEVGVYIPDRRKEGYGL 115 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + G LIITVDCG ++ + +D+I+ DHHQ + AYA++NP Sbjct: 116 NEEAIVHLKDLGYDLIITVDCGISAIKEVDLCNQLKMDIIITDHHQCPEQLPKAYAILNP 175 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 ++ D LC AG+ ++ + K +L+S L++ A+AT+ D+VPL+ Sbjct: 176 HQSDCSYPFKELCGAGIALKLVQAL--------KNSSITELMSYLEIAAVATIADLVPLL 227 Query: 258 GLNRAYVVKGLMVARRQG-NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 G NR+ V GL + N G++ LI+ IT+ N+G+ + P INAGGR+ + Sbjct: 228 GENRSIVKFGLNSINQNKLNLGIQVLIDVAQLKKQQITSYNVGFQLAPRINAGGRLDSAM 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G LL + E A+ L+ N R+L+E MLE+A + + + + +VIVV Sbjct: 288 TGVLLLTTHSVDEAMRYAVILNEYNAQRQLIEQTMLEEAITMIESH-EKHRNNNVIVVYE 346 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 W+ G++G++++R+ E++G+PSF S +E+G GSGRSI F + + ++ Sbjct: 347 KGWNEGVIGIVSSRITERYGKPSFVFSIDENGIAKGSGRSISDFHLFHALQE--ISDCML 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH+ AAGL++ N + + F D L +N+ ++ Sbjct: 405 GFGGHSQAAGLSIRVENLNIFEQNINFVSEKYLTNQSFKKKFFFDSELKEEYLNLDFLNK 464 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 ++ P+G NP P+F N +++ + + + T+ F L + Sbjct: 465 VKQMEPFGIKNPTPLFLMKNVRIKQVGRIGKNQTHFR-GQLNRYTILGFDFG----ELSD 519 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ + K + + + N +R + QL++ D +E Sbjct: 520 DILANSDKELDILCSIEENVYRDAVSLQLKLRDYKWIE 557 >gi|319955764|ref|YP_004167027.1| single-stranded-DNA-specific exonuclease recj [Nitratifractor salsuginis DSM 16511] gi|319418168|gb|ADV45278.1| single-stranded-DNA-specific exonuclease RecJ [Nitratifractor salsuginis DSM 16511] Length = 531 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 159/532 (29%), Positives = 255/532 (47%), Gaps = 32/532 (6%) Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 FL S++ L PDP D ++A RI +AI EKI++ GDYDVDG +S A+M RF Sbjct: 24 DTFL--SLKDL-PDPYAFKDMERAVERIAEAIEKGEKIVLVGDYDVDGVSSTAIMRRFFE 80 Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 V IP+R DGYG +P+L + E A LI+TVD G + +A + GID+I Sbjct: 81 ALGVPLEWVIPNRFRDGYGLSPTLFPRL--EHADLILTVDNGIAANEAAKLCKEAGIDLI 138 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237 + DHH V AYA+V+ + D +C A + + + + R L D Sbjct: 139 ITDHHIVPDTPPQAYAIVDQKQSDCGFPHREVCGAQIAWYLCAALNRRLG------AGID 192 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 + +LL+L ALA + D++PL +NRA V +GL + + + N + AE++ Sbjct: 193 MKALLELTALAIIADIMPLQHINRAMVHQGLRLL-ERSHSPFIVAWRERNGKERLRAEDI 251 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 + + P IN+ GR+ ++++ L + SQE L +L N+ R+ ME + ++A+A+ Sbjct: 252 AFGLAPLINSAGRMEDASIACDFLCAPTSQEAHKLLERLQGFNERRKGMEENIFQEAQAQ 311 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 + +A + + G+ WH G++G++AAR+ +F P+ ++ GSGRS Sbjct: 312 I------DPEAPLAIAIGEEWHEGVLGIVAARIARRFEVPALVLTRSGAS-YKGSGRSFG 364 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + ++ A + ++ K GGHA A GL+V G Q+ A + P Sbjct: 365 SCHLYEL--LATQRSLMEKFGGHAAAVGLSVSEEKLGHWKQRLQEEALSRCPRESFADP- 421 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES 535 +I G + + L +LE PYG GNP P F ++S+RV+ H ++ Sbjct: 422 EILGEIGFDLLGWELYRLLERFEPYGEGNPRPKFITRGVSVESLRVLGSEGQHFKVLLSD 481 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 +AI FR P G R+ + L N + G QL + Sbjct: 482 GTFRQ-EAIQFRCSALP-------ETGDRIDLVYTLNENRFNGRSTLQLLID 525 >gi|49486469|ref|YP_043690.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|49244912|emb|CAG43373.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus MSSA476] Length = 757 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 285/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + +VA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKAIVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + +G++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQGLI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|330817651|ref|YP_004361356.1| Putative single-stranded-DNA-specific exonuclease [Burkholderia gladioli BSR3] gi|327370044|gb|AEA61400.1| Putative single-stranded-DNA-specific exonuclease [Burkholderia gladioli BSR3] Length = 564 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 178/582 (30%), Positives = 277/582 (47%), Gaps = 30/582 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 + Q A A+ +H + ++AR+ R V+ + + ++ L+P P L Sbjct: 3 RLVTRQASPADAEALA-RHGLHPVLARLYAARGVTCPEDIET----ALARLVP-PASLKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C+ AA + A+ +++++ DYD DGA + A+ +R L + + +P+R GYG Sbjct: 57 CEGAAVLLADALAARKRMLVVADYDCDGATACAVAVRGLRMLGASIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P +++ +L+ITVD G S D + A GIDV+V DHH + A A+VNP Sbjct: 117 TPEIVKLAAARRPELLITVDNGIASVDGVAAANALGIDVLVTDHHLPGATLPAARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 177 NQPGCEFPSKHIAGVGVMFYVLLALRAELRRRGAFDDARPEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLK--ALIERVNISSPITAENLGYMIGPSINAGGRIG 312 L G NR V +GL R+ + +A +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRKGRMQPGIAALFRAAAREARSASAFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG L +DD LA +LD +N+ RR +E+ M +QA A + D +A+ I Sbjct: 297 DMSLGIECLTTDDIGRAWELAQQLDTMNRERREIEAGMQQQALADLAQ--VDPAEAATIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 355 LFNPDWHQGVIGIVAGRLKEKFHRPSFTFAHADESGARVKGSGRSIPGFHLRDALDLVSK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E +LV GGHAMAAG+T+E R F+ A + + V + DG L + Sbjct: 415 REPDLLVTFGGHAMAAGVTLETDKVPRFAAAFEAVAREWLSEEALSRVLETDGDLEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 +++L+ +G G P P+F+ ++ S +V HL++ ++ + AI F Sbjct: 475 TPQFVELLD-GAVWGQGFPAPLFSGE-FEVASQALVKDKHLKLQL-ARGRQRFGAIWFNH 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 532 TE---------PLPARATVAYRLASDTWNGVTRVQLIVEHAA 564 >gi|291458408|ref|ZP_06597798.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sp. oral taxon 078 str. F0262] gi|291418941|gb|EFE92660.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sp. oral taxon 078 str. F0262] Length = 616 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 179/587 (30%), Positives = 288/587 (49%), Gaps = 31/587 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W + + +++K I + R+L NR + + + + FL+ S+ L L+ Sbjct: 36 RDWYLYQKRADFS---ELSEKLGIDPVTVRILRNRELHTEEEIRSFLSASLSELPSP-LL 91 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D + A + +A+ ++I I GDYDVDG + ++ R LS S N + IPDRI DG Sbjct: 92 LPDAIRFANILNRALAEKKRIRIVGDYDVDGVCAAYILYRGLSALSENLDYEIPDRIRDG 151 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK------SEE 188 YG N ++ + +G LI+T D G ++ + L YA GI V+V DHH + Sbjct: 152 YGINREIIRRAKEDGVGLILTCDNGISAREELSYAKELGIPVLVTDHHDIPRDSEGRELL 211 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A A+V+P R +C A V + +L+L+Y++ + + LL A+A Sbjct: 212 PEALAVVDPKREGSRYPFPEICGAVVAWKLLLLLYQMKNIAEEEG-----MRLLPFAAIA 266 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSIN 306 TVCDV+PL NR V GL NPGL+AL+ + +S + A +LG+++GP IN Sbjct: 267 TVCDVMPLREENRILVKYGLQALSDPENPGLRALLSQSGLSGFSPLRAYHLGFVLGPCIN 326 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 AGGR+ + RL +S+ +E E LA KL LN+ R+ M E+A + + + Sbjct: 327 AGGRLESAKTALRLFLSESPEEAEPLAQKLKELNEQRKAMTKQACEEAFRQAEEE---DE 383 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMV 425 SV+++ + H + G++A R++E++ RPSF ++ +E+G GSGRSIEG+ + Sbjct: 384 SRSVLLLYLPKLHESLAGIVAGRVRERYYRPSFIVTRAQEEGMAKGSGRSIEGYPM--AD 441 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 A ++ +L + GGH MAAG ++ L K A +P ID + Sbjct: 442 KLAEQKELLERFGGHPMAAGFSLREDKIDALRSALNKDAE--IPPEKLKEKLWIDAAMPF 499 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 S V LI L P+G GN P FA ++ S+RV+ ++ S + +A Sbjct: 500 SYVTEKLISELSRLEPFGKGNEKPRFAERALRILSVRVLGQKRNAVKFLLLSGEGRRAEA 559 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F L E + + M + + ++ + G K QL + D Sbjct: 560 ILFSDGDRFLRELGEK---RLMDIVYYPEIHEYNGRKSLQLIISDYR 603 >gi|319892689|ref|YP_004149564.1| Single-stranded-DNA-specific exonuclease RecJ [Staphylococcus pseudintermedius HKU10-03] gi|317162385|gb|ADV05928.1| Single-stranded-DNA-specific exonuclease RecJ [Staphylococcus pseudintermedius HKU10-03] Length = 764 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 148/589 (25%), Positives = 276/589 (46%), Gaps = 25/589 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 S F+W + ++ ++ + +++ + ++ +L ++ + + + + M +P Sbjct: 7 SKFQWQTDTNRQSMDDV--LVEQYKLTPLMRYILESKGYTEATQLAQVLSASKDNMHNPS 64 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 +++D DKA +RI AI N EKI+++GDYD DG S +M++ L YIP+R + Sbjct: 65 LMSDMDKAVKRIHTAIQNQEKILVYGDYDADGVTSTTIMVKTLQQLGAIVGWYIPNRFTE 124 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGP+ + +EG LIITVD G + ++ N G+DVIV DHH++ AYA Sbjct: 125 GYGPSEPAFKNAYDEGVSLIITVDNGIQGHTEIEMVQNLGVDVIVTDHHEIGDTLPAAYA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D LC AGV + + VP F + + T+ D+ Sbjct: 185 IVHPMHPDYDYPFISLCGAGVALKLAQSLL------GDVPNIFWV-----YAMIGTIADL 233 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 V L NR V GL + + A++ + + +T E +G++IGP +NA GR+ + Sbjct: 234 VSLTDENRFIVQHGLQLLNESPPVSIAAILNQAQFNDTVTEETIGFIIGPRLNAVGRLDD 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + LL++DD++E LA +++ N R+ + ++++A + +V+ Sbjct: 294 AALAAELLMTDDAEEALFLAEQVEHFNVERKDIVQTIVDEAMVMAEDAIQAGE--HFLVL 351 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++A+R+ E F P+ ++ + + G S + + + ++ + Sbjct: 352 AKEDWHEGVLGIVASRIVETFHLPTMVLN-IDHEQQHAKGSSRSITQVSMFEALSSQQTL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + K GGH MAAGLT+ L + + + P+ K+D ++ + + I Sbjct: 411 ISKFGGHHMAAGLTLPIDQVSALREGLNDWMRTHIDTTALQPIQKVDVTIDVGHITVEQI 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGT 551 +E P+G P+ + + + HL+MTF Q+ LQA+ + Sbjct: 471 QSIERLRPFGTDFKRPIIQVNGLTVLQSKGIGQQQAHLKMTFVEQN---LQALFWNQGAL 527 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + + VTG L +N W G++ Q+ + D E + Sbjct: 528 S----SELMPNQHVDVTGELQINEWNGNRTAQMVLTDMKSNERQILDYR 572 >gi|238854729|ref|ZP_04645059.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii 269-3] gi|282932880|ref|ZP_06338277.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii 208-1] gi|238832519|gb|EEQ24826.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii 269-3] gi|281302915|gb|EFA95120.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii 208-1] Length = 753 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 150/574 (26%), Positives = 274/574 (47%), Gaps = 32/574 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W E + + +K+ + + A++ R ++ D ++ + DP ++ Sbjct: 3 WKKR---EATELSEELKEKYQLSPLAAKLFSLREINTDEKLNYWLNGTEEDLADPYLMHG 59 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +A RI +AI N EKI I+GDYD DG + +M L+ + + +IPDR DGYGP Sbjct: 60 MQEAVERINKAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N ++ +++G +LIITVD G T + ++YA G DVIV DHH + + A +V+ Sbjct: 120 NMKRYQQIVSDGTKLIITVDNGVTGIEEVKYAQENGCDVIVTDHHSFQEQMPDAKVIVHC 179 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N + C AGV + + + ++ + L++L + T+ D+V + Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRAL-----------MDDTMPELIELAMIGTIGDMVKVS 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316 G V +GL + PGL+ALI+ + I ++G+ I P +NA GR+ ++L Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDIGFQIAPRLNATGRLANASL 288 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL++DD + + LA K++ LN +R+ + + E A ++ + + V + Sbjct: 289 AVDLLLADDLEVAQKLAKKVEQLNNDRKELTQKVYESALEQIKKFGYNSENTLV--LYDT 346 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++GL+A ++ EK +P+ ++ ++G GSGRS GF++ + ++ + Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTQNDEGLVKGSGRSNAGFNLFNALFKL-KDSLFEN 405 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A GL+++ N L N A T V D L+ + ++++++D + Sbjct: 406 FGGHDFACGLSLKEENINPLRK----AFENSYQASSNTEVDYYDLDLDVNNIDLSILDDM 461 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + GP+G NP PV+ ++ S+ V+ + F + L+ I F + F Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKSHLKFNVGN---LKVIGFNMA------F 512 Query: 557 LMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589 L Q+ + ++ N W+ Q ++ Sbjct: 513 LTQNLLSYVTAIYLNIGKNMWQKKLSLQGQLKAI 546 >gi|91763259|ref|ZP_01265223.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter ubique HTCC1002] gi|91717672|gb|EAS84323.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter ubique HTCC1002] Length = 564 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 170/579 (29%), Positives = 300/579 (51%), Gaps = 20/579 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 S+SG +W + I + Q++ + ++R++++R D +N + + + Sbjct: 3 SVSGKKWEQKKINQNI--VDKLKQEYNFNEFLSRLIISRKFDNDEIAT-INADLD--LNN 57 Query: 72 PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D ++ +V +I N+EKI I GDYDVDG+A+ +L ++F + YIPDR Sbjct: 58 VFLNNKDFSQSINLVVNSINNNEKICIVGDYDVDGSAATSLFVKFFEGINHPFFYYIPDR 117 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGYG L +K I + +LII VDCGSTS DA+ + I ++IDHH++ Sbjct: 118 EKDGYGATKKLFKKLILKNPKLIIMVDCGSTSNDAIDFLNENEIKSLIIDHHEINKPFPN 177 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A +++NP + + +LCA + + L L+ + ++ + ++ L V LATV Sbjct: 178 ANSIINPKKDNGYREYDYLCATTLTYFFLDLLIKKIKSE------INISDYLIYVLLATV 231 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+PL LNR +K L N + L + + I +LGY+IGP +NAGGR Sbjct: 232 CDVMPLRKLNRLIALKTLKNFDITKNLPIGTLFDLNEKKNRININDLGYLIGPILNAGGR 291 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G+S + LL S++ + + L LN R+ +E+ +LE ++ + + + V Sbjct: 292 LGKSQYATELLSSNNDLVINDRSKSLIKLNDKRKKIENLILE----EIDFKKIEKENKDV 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I+ + G++G++AARLK+ F +PS I+ + GS RS+ ++IG+++ +++ Sbjct: 348 IIYYNPNINEGLIGIIAARLKDYFNKPSIVITASNE-LLKGSVRSVYNYNIGRVIKNSLD 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + +++ GGGH MAAG T+ R + ++ + +T +F + +++ A N Sbjct: 407 QKLILNGGGHNMAAGFTLNRDSLKAFENYILEDFVK--SNTVTNNIFSYESEISSLAFNE 464 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 D ++ P+G GNP P F K+ V+N H+ + +S+ ++++I+F Sbjct: 465 DFYDNIKKLEPFGTGNPVPTFLLRRLKIIKPMVLNKKHISLNLKSKTGFSIKSISFNSIN 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LGE+LM + K + V G + N W K QL + D Sbjct: 525 TKLGEYLMNYKNK-IDVIGQINENIWNNKKSNQLTIKDL 562 >gi|294055365|ref|YP_003549023.1| single-stranded-DNA-specific exonuclease RecJ [Coraliomargarita akajimensis DSM 45221] gi|293614698|gb|ADE54853.1| single-stranded-DNA-specific exonuclease RecJ [Coraliomargarita akajimensis DSM 45221] Length = 570 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 168/584 (28%), Positives = 294/584 (50%), Gaps = 24/584 (4%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W ++ + + + + ++ +LV R V + A++F+ P + +L +P LT Sbjct: 3 WNTIET--DSVQVENLCESLGVSKVLGTLLVQRGVDSVETAEEFMRPRLAML-DNPFALT 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + + A +RI AI +E +++FGDYDVDG S ++ L H ++ +P R+ +GYG Sbjct: 60 NLEAAVKRIELAIERTEDVVVFGDYDVDGVTSTVQLVSLLRHLGLDPRFCVPKRLEEGYG 119 Query: 137 PNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 + +++ + L I +DCG+ +++ + Y G++VIV+DHHQ K LV Sbjct: 120 LSREAIDRVFDGRVPNLFIALDCGTNAHEPIAYIRELGVEVIVVDHHQAKDAAPDDCLLV 179 Query: 196 NPNRLDDLS-GQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDV 253 NP+ D LC AG+VF +L + ++ R+ L LDLVA+ TV D+ Sbjct: 180 NPHVHDPKDAPWRDLCTAGLVFKLLHGLLKLRREAEDPRVETIQLKDYLDLVAMGTVADL 239 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRI 311 VPL G NR G+ R G PG++AL E I + + ++ + IGP INA GR+ Sbjct: 240 VPLNGENRILAWFGIHHLRANGRPGVRALAEVSGIDATQDLVSSDISFRIGPRINASGRL 299 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ L LL+ DS+ + +A +LD +N+ R+ +E ++ E+AEA+ + D AS I Sbjct: 300 ADAALPIELLLCSDSERCKQIAGELDTMNRERQAIERSIAEEAEARAEKEFAD---ASGI 356 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ G+ WHPG+VG++A+R+ +F +P+ + E + GSGRS+EG ++ + Sbjct: 357 VLFGEDWHPGVVGIVASRVSRRFHKPAVILG-AEADQAKGSGRSVEGANLVEAFQCC--A 413 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH MAAG++++ N + F + P + I L+ + ++ Sbjct: 414 DLLGHWGGHPMAAGVSLDATNVPAFAERFVSALDELYPDGLPEASMDIAAWLDPADLSEE 473 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQD-SETLQAIAFRVY 549 L+ L+ P+G NP PVF ++ + + + + ++ +A+R+ Sbjct: 474 LLGELDRMHPFGQANPEPVFGMKGVVFETAPQPFGDGNFRFRLPAGGHGRSVSGVAWRMD 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 P G + +T NYWR S+ Q+ V+D + Sbjct: 534 SVP-------QAGVPVDMTFRFAWNYWRNSRYPQITVVDWKIAD 570 >gi|331086135|ref|ZP_08335217.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406294|gb|EGG85808.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 9_1_43BFAA] Length = 571 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 171/574 (29%), Positives = 290/574 (50%), Gaps = 28/574 (4%) Query: 30 ALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 I QK I I+AR++ NR ++ + + +LN +I L D +++ D D+A + + Sbjct: 13 FQEIAQKFHISPILARLIRNREITDEEEIRLYLNGTIAELH-DGILMKDMDRAVEILSEK 71 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I + I + GDYD+DG + +++ + + IPDR+ DGYG N L+ + + Sbjct: 72 IREKKPIRVIGDYDIDGVNATYILLEGIEKLGGVVDSDIPDRMKDGYGLNQELINRALEA 131 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE---------IPAYALVNPNR 199 G IIT D G + + + YA G+ +IV DHH++ EE PA A+V+P R Sbjct: 132 GVDTIITCDNGIAAAEEIAYAKKMGMTIIVTDHHEIPYEEKNGEKVYELPPADAVVDPKR 191 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 +D LC A V + ++ ++ ++ QD D+ L++ VA+ATV DV+ L+G Sbjct: 192 IDCEYPFSSLCGAAVAYKLVETLFNVMGQD-----VEDVDYLMENVAIATVGDVMDLVGE 246 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGS 318 NR +V +GL + + N GL ALIE + ++A ++G++IGP +NAGGR+ + Sbjct: 247 NRIFVKQGLEMLKCTKNYGLDALIECTGVDRAHLSAYHIGFVIGPCLNAGGRLDTAKRAL 306 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 LL + +E +MLA L LN +R+ M A +E+A V + +Q+ V+V+ Sbjct: 307 ELLRASSRREADMLAGDLKALNDSRKEMTQAGVEEAVKMV--ETTALQEDKVLVIFLPDC 364 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H + G++A R++E++ +P F ++ E G GSGRSIE +D+ + +S + + K G Sbjct: 365 HESLAGIIAGRIRERYHKPVFILTKAEQG-AKGSGRSIENYDMYEEMSKC--KALFTKFG 421 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH MAAGL++ N + ++ ID + V L++ LE Sbjct: 422 GHKMAAGLSLPEENIEVFRRQMNE--KTVLTEEDFCEKVSIDMQMPLQYVTEELVEELEL 479 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G GN PVF + + + R++ L+M + + AI F L + Sbjct: 480 LEPFGKGNTKPVFVEKDMLVLNSRILGKNQNVLKMQVKDLGGTVMDAIYFGEAQECLEKI 539 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G ++ T + VN +RG K Q+ + + Sbjct: 540 --RRAGGKITATYYPSVNEFRGQKTLQIVIQNYR 571 >gi|260663961|ref|ZP_05864814.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii SJ-7A-US] gi|260561847|gb|EEX27816.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii SJ-7A-US] Length = 753 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 150/574 (26%), Positives = 274/574 (47%), Gaps = 32/574 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W E + + +K+ + + A++ R ++ D ++ + DP ++ Sbjct: 3 WKKR---EATELSEELKEKYQLSPLAAKLFSLREINTDEKLNYWLNGTEEDLADPYLMHG 59 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +A RI +AI N EKI I+GDYD DG + +M L+ + + +IPDR DGYGP Sbjct: 60 MQEAVERINKAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N ++ +++G +LIITVD G T + ++YA G DVIV DHH + + A +V+ Sbjct: 120 NMKRYQQIVSDGTKLIITVDNGVTGIEEVKYAQENGCDVIVTDHHSFQEQMPDAKVIVHC 179 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N + C AGV + + + ++ + L++L + T+ D+V + Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRAL-----------MDDTMPELIELAMIGTIGDMVKVS 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316 G V +GL + PGL+ALI+ + I ++G+ I P +NA GR+ ++L Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDIGFQIAPRLNATGRLANASL 288 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL++DD + + LA K++ LN +R+ + + E A ++ + + V + Sbjct: 289 AVDLLLADDLEVAQKLAKKVEQLNNDRKELTQKVYESALEQIKKFGYNSENTLV--LYDT 346 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++GL+A ++ EK +P+ ++ ++G GSGRS GF++ + ++ + Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTQNDEGLVKGSGRSNAGFNLFNALFKL-KDSLFEN 405 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A GL+++ N L N A T V D L+ + ++++++D + Sbjct: 406 FGGHDFACGLSLKEENINPLRK----AFENSYQASSNTEVDYYDLDLDVNNIDLSILDDM 461 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + GP+G NP PV+ ++ S+ V+ + F + L+ I F + F Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKSHLKFNVGN---LKVIGFNMA------F 512 Query: 557 LMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589 L Q+ + ++ N W+ Q ++ Sbjct: 513 LTQNLLPYVTAIYLNIGKNMWQKKLSLQGQLKAI 546 >gi|170704154|ref|ZP_02894756.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria IOP40-10] gi|170130938|gb|EDS99663.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria IOP40-10] Length = 565 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 181/581 (31%), Positives = 273/581 (46%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAASLLADAIAGKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT+ + R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + L + W G R QL V A+ Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLVVEHAA 564 >gi|116690137|ref|YP_835760.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia cenocepacia HI2424] gi|116648226|gb|ABK08867.1| exonuclease RecJ [Burkholderia cenocepacia HI2424] Length = 565 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 185/581 (31%), Positives = 272/581 (46%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + HL GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R A + R TA +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT++ N R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L V L + W G R QL V A+ Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564 >gi|325144128|gb|EGC66435.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M01-240013] Length = 590 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 46 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERKEKILI 101 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 102 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 161 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 162 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 220 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 221 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 280 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 281 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLAQDDAEAQEL 340 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 341 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 398 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 399 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 458 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 459 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 517 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 518 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 566 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L N WR + QL + Sbjct: 567 YRLVANEWRNNLELQLYIDYWEAA 590 >gi|325134022|gb|EGC56677.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M13399] Length = 566 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLAQDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L N WR + QL + Sbjct: 543 YRLVANEWRNNLELQLYIDYWEAA 566 >gi|121996931|ref|YP_001001718.1| single-stranded-DNA-specific exonuclease RecJ [Halorhodospira halophila SL1] gi|121588336|gb|ABM60916.1| exonuclease RecJ [Halorhodospira halophila SL1] Length = 578 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 174/566 (30%), Positives = 267/566 (47%), Gaps = 26/566 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + ++ RV R + L+ S+R L P P L D D+A R ++ A+ ++I++ Sbjct: 21 GLHPVLRRVYERRGLRDS---GELDLSLRRLQP-PSGLADLDRAVRALIPALRAGQRIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHC----SVN---ANMYIPDRIVDGYGPNPSLMEKFINEGA 150 GDYD DGA + ALM+ L + ++PDR GYG + +++E+ Sbjct: 77 VGDYDADGATATALMVLALRRLAKAAGGDPAAIESFVPDRFSLGYGLSGAVVERLRPMEP 136 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 ++TVD G TS + + A G+ V+V DHH A A+V+P R DD L Sbjct: 137 DWLVTVDNGVTSVEGVAAARQAGMGVVVTDHHAPGESLPAAEAVVDPLREDDHFPTTALA 196 Query: 211 AAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 GV F + + + R L D + LL LLDLVA+ TV D+VPL NR V +GL Sbjct: 197 GVGVAFYLALALRRGLEADGGLREETASLLELLDLVAVGTVADLVPLDHNNRILVEQGLR 256 Query: 270 VARRQ-GNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R PG+ AL+E +TA +L + +GP +NA GR+ + G L+ +D Q Sbjct: 257 RIRAGVVRPGIVALLEVAGREPTEVTAADLAFAVGPRLNAAGRMDDMTAGVDCLLEEDPQ 316 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 A LD LN+ RR +E+ M E+A A + Q +D+ + V WH G+ G+LA Sbjct: 317 RARERAAGLDGLNRQRREVEAQMTEEALASLEAQAEDVGLG--VCVAARGWHQGVTGILA 374 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAG 445 +RLKE++ RP+ A + + G+ GS RS+ G + +++ A ++ GGHAMAAG Sbjct: 375 SRLKERYHRPAVAFAPADGGRLRGSARSVPGLHMRDLLARIHARSPSLIECFGGHAMAAG 434 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+E F + + + + DG L +N+ L GP+G G Sbjct: 435 LTIESGQLDAFRRAFAGALDDALGGELPKLRLETDGALAPEELNLETAWALRYGGPWGQG 494 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE--TLQAIAFRVYGTPLGEFLMQSRGK 563 P P F +++ + + HL++ + D AIAF Sbjct: 495 FPEPCFDG-VFRIERAKELRGGHLRLELSNGDGTGPVFPAIAFGGVERGWDRLQGA---- 549 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDA 589 +H VN +RGS QLR+ Sbjct: 550 -VHAIYRPEVNRFRGSVELQLRIDYL 574 >gi|225175542|ref|ZP_03729536.1| single-stranded-DNA-specific exonuclease RecJ [Dethiobacter alkaliphilus AHT 1] gi|225168871|gb|EEG77671.1| single-stranded-DNA-specific exonuclease RecJ [Dethiobacter alkaliphilus AHT 1] Length = 788 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 160/581 (27%), Positives = 265/581 (45%), Gaps = 30/581 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W + + + + A L R V+ + A+ FL S+ L DP + Sbjct: 8 WTVPEKNP---AVQQLAEALGLHRLTAACLTQRGVTTTEAARLFLAGSLSDL-GDPFKMA 63 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 KAA R+ A+ E ++I+GDYD DG S AL+M L V+ YIP R+ DGYG Sbjct: 64 GMAKAAERLALAVREREPVLIYGDYDADGVTSTALLMAVLQKLEVSVEYYIPSRLGDGYG 123 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + S++E+F G +L +TVDCG S+ ++ A G+D+IV DHH+ + A+A++N Sbjct: 124 LHGSVLEEFAGRGGKLAVTVDCGINSFAEMELAKELGLDLIVTDHHECFDGQRNAFAVLN 183 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + + + +L GV + + ++ +L + LDLVA+ ++ DVVPL Sbjct: 184 PKQEECGYSERNLAGVGVAWNLARALHSLLGV-----PFAETAEYLDLVAVGSIADVVPL 238 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESN 315 +G NR V GL + PGL AL N+ ++A + +++ P +NA GR+G++ Sbjct: 239 LGENRILVKYGLEKLSERPRPGLAALARVGNVGEQKLSATQVAFVLAPRLNAPGRLGDAA 298 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L++D++ + +LD N+ R+ +E A+ +V+ Sbjct: 299 PAVETLLADEADAEALA-HELDEKNRQRQQVEKD----ILAEARELAAAQADKPALVLWR 353 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 D WHPG+VG++A RL +F +PS ++ + GS RS+ G D+ + E L Sbjct: 354 DTWHPGVVGIVAGRLASEFAKPSALVAVDGTQGN-GSIRSVPGCDVVDALQACTEH--LA 410 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH AAGLTV+ + F + + VL ++ + Sbjct: 411 RFGGHPEAAGLTVDTQCLEAFREAFCRAVATQKTKEEQRQQVAAEAVLAELSLELVEELA 470 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPL 553 + P+G GNP P+F + ++ + R V HLQM ++ I F + Sbjct: 471 --ALEPFGQGNPEPLFLVRDVEVAAARRVGNNGKHLQMKLKN-GGPVYAGICFGGGEADI 527 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 +RG ++ N W+G L V D + Sbjct: 528 ------ARGMQVDAVVFPTTNTWQGRTSLSLHVRDVRQAQA 562 >gi|268611135|ref|ZP_06144862.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus flavefaciens FD-1] Length = 675 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 161/589 (27%), Positives = 265/589 (44%), Gaps = 33/589 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 W G + + + A L + + + D LN + DP + Sbjct: 2 KNWTV--GVPDRKTVSGLVFGCQVSPLTAAALAAKGYTTPESVADSLNV---DGLSDPFM 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D D AA I +AI N EKI ++GDYD DG S ++ +L + YIP+R +G Sbjct: 57 IKDMDIAAETINEAIDNEEKICVYGDYDCDGIMSTVILFSYLFEAGADVVYYIPER-SEG 115 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + ++K ++G LI+TVD G ++ +Y G+ +++ DHHQ A A+ Sbjct: 116 YGLNKNAIDKIRDDGVSLIVTVDNGISAISEAEYIYECGMKLVITDHHQQGDTLPRAEAI 175 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P+R D SG H+C AG+ + + + + DL A+ATV D+V Sbjct: 176 VDPHRHDCPSGFKHMCGAGLALKLTAAL-------DGGDYTLAMEQFSDLAAIATVADIV 228 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 L G NR V +G+ + P L AL + I + ++G+ + P INA GR G Sbjct: 229 SLTGENRFLVSEGMRLIDNTDRPALLALKKVCGLEDKEIDSTSIGFGLAPRINASGRFGS 288 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + +D E +A +LD LN R+ E+ ++ + A + + I + VI + Sbjct: 289 PRTAAELFLCEDPDEALDIASELDKLNTMRKSAENDIISEISAMIDSD-PSIIRKRVIYL 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++AAR++E FG+P F S + G+ GS R+ F + + Sbjct: 348 SGKNWHHGVIGIVAARIQEMFGKPCFIASETD-GEVRGSARAFGEFSV--FEALTYASDA 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGH A G TV+ R + +++A + D L + + + Sbjct: 405 LSKFGGHPGAGGFTVKDGMTERFGELLEEYAAANHEIMPLL-SLSADSPLTPAELTFQNV 463 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-H--LQMTFESQDSETLQAIAFRVYG 550 + L+ PYG GN P+F N ++ IR + H ++ F + A FR Sbjct: 464 EDLKKLEPYGMGNEQPLFYIENAEITEIRPMGNGSHSMIKFKF---GTTEYNAKMFRTS- 519 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK 599 + L +G + L +N +RG++ + V D P F + Sbjct: 520 ---PDMLPVGKGDPAKMIVTLGINEFRGNRSLDILVKDIRP---QMFEQ 562 >gi|327395062|dbj|BAK12484.1| single-stranded-DNA-specific exonuclease RecJ [Pantoea ananatis AJ13355] Length = 503 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 172/507 (33%), Positives = 253/507 (49%), Gaps = 15/507 (2%) Query: 96 MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 M+ GD+D DGA S AL + L N +P+R DGYG +P ++E+ GA++I+ Sbjct: 1 MVVGDFDADGATSTALTVLALRSMGCSNVQYLVPNRFEDGYGLSPEVVEQARARGAEMIL 60 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S+ + A GI V+V DHH A A+VNPN D L GV Sbjct: 61 TVDNGISSHAGVALAHQHGIAVLVTDHHLPGETLPDADAIVNPNLPDCHFPSRSLAGVGV 120 Query: 215 VFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 F +++ + LR +L LLDLVAL TV DVVPL NR V +GL Sbjct: 121 AFYLMMALRAHLRTQGWFGVTRSEPNLADLLDLVALGTVADVVPLDANNRILVWQGLSRI 180 Query: 272 RR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 R + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL++DD + Sbjct: 181 RAGKCRPGIKALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLLTDDLSQS 240 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAA 388 MLA +LD LNQ R+ +E M +A A ++ + WH G+VG+LA+ Sbjct: 241 RMLASELDALNQMRKEIEQGMQSEALALCQKLENEQTDLPLGLAFYHPEWHQGVVGILAS 300 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGL 446 RLKE+F RP A + DG GSGRSI G + + G++ K GGHAMAAGL Sbjct: 301 RLKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLHPGLMQKFGGHAMAAGL 360 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++E + F + V DG L + ++ ++L AGP+G Sbjct: 361 SLEEARYDEFRQRFADLVGEWLAGEALQGVIWSDGALQPAEFSLQTAEVLRDAGPWGQSF 420 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P P F +L R+V HL++ E + + IAF V T + S +++ Sbjct: 421 PEPAFDGR-FRLLQQRLVGERHLKVMVEPLEGGPLIDGIAFNVDTTLWPD----SSVRQV 475 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPV 592 + L +N +RG++ QL + P+ Sbjct: 476 ELAYRLDINEYRGNRSVQLIIEHLWPL 502 >gi|21283315|ref|NP_646403.1| hypothetical protein MW1586 [Staphylococcus aureus subsp. aureus MW2] gi|297207644|ref|ZP_06924079.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911726|ref|ZP_07129169.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus TCH70] gi|21204755|dbj|BAB95451.1| MW1586 [Staphylococcus aureus subsp. aureus MW2] gi|296887661|gb|EFH26559.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885972|gb|EFK81174.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus TCH70] Length = 757 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 157/588 (26%), Positives = 284/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + +VA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKAIVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|167903424|ref|ZP_02490629.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei NCTC 13177] Length = 564 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 180/574 (31%), Positives = 275/574 (47%), Gaps = 30/574 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A+ +H + ++AR+ R + S + ++ L+P P L C +AA + Sbjct: 11 PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 A+ K+++ DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 65 ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVD G S D + A +GIDV+V DHH A A+VNPN+ Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 H+ GV+F VL+ + LR L LLDLVAL TV DVV L G NR Sbjct: 185 SKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRV 244 Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R A + R + +A +LG+ +GP +NA GR+ + +LG Sbjct: 245 LVAQGLQRIRNGRMQPGIAALFRAAARNARSASGFDLGFGLGPRLNAAGRLSDMSLGIEC 304 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L +DD LA +LD +N+ RR +E+ M +QA A + + D +A+ I + WH Sbjct: 305 LTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQ 362 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVK 436 G++G++A RLKE+F RP+F + +DG GSGRSI GF + + E ++V Sbjct: 363 GVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVT 422 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAG+T+E N R F+ A + V + DG L + ++++L Sbjct: 423 FGGHAMAAGVTLETANVPRFAAAFETVAREWLSDDALARVIETDGDLEDAYFTPQVVELL 482 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + A +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 483 D-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL-TRGRQRFNAIWFNHAE------ 533 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + L + W G+ R QL V A+ Sbjct: 534 ---PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564 >gi|53719889|ref|YP_108875.1| putative single-stranded-DNA-specific exonuclease [Burkholderia pseudomallei K96243] gi|53723793|ref|YP_103318.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei ATCC 23344] gi|67642990|ref|ZP_00441740.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei GB8 horse 4] gi|76810184|ref|YP_334107.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1710b] gi|121599631|ref|YP_993517.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei SAVP1] gi|124384430|ref|YP_001029054.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei NCTC 10229] gi|126448803|ref|YP_001081025.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei NCTC 10247] gi|126452335|ref|YP_001066895.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1106a] gi|134277269|ref|ZP_01763984.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 305] gi|167000663|ref|ZP_02266474.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei PRL-20] gi|167739333|ref|ZP_02412107.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 14] gi|167816547|ref|ZP_02448227.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 91] gi|167824943|ref|ZP_02456414.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 9] gi|167846460|ref|ZP_02471968.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei B7210] gi|167895038|ref|ZP_02482440.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 7894] gi|167911674|ref|ZP_02498765.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 112] gi|167919674|ref|ZP_02506765.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei BCC215] gi|217420571|ref|ZP_03452076.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 576] gi|226195518|ref|ZP_03791106.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei Pakistan 9] gi|237813008|ref|YP_002897459.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei MSHR346] gi|242317071|ref|ZP_04816087.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1106b] gi|254177621|ref|ZP_04884276.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei ATCC 10399] gi|254184375|ref|ZP_04890965.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1655] gi|254191409|ref|ZP_04897913.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei Pasteur 52237] gi|254195860|ref|ZP_04902286.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei S13] gi|254200275|ref|ZP_04906641.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei FMH] gi|254209351|ref|ZP_04915697.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei JHU] gi|254262003|ref|ZP_04953057.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1710a] gi|254297040|ref|ZP_04964493.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 406e] gi|254357977|ref|ZP_04974250.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei 2002721280] gi|52210303|emb|CAH36282.1| putative single-stranded-DNA-specific exonuclease [Burkholderia pseudomallei K96243] gi|52427216|gb|AAU47809.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei ATCC 23344] gi|76579637|gb|ABA49112.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1710b] gi|121228441|gb|ABM50959.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei SAVP1] gi|124292450|gb|ABN01719.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei NCTC 10229] gi|126225977|gb|ABN89517.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1106a] gi|126241673|gb|ABO04766.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei NCTC 10247] gi|134250919|gb|EBA50998.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 305] gi|147749871|gb|EDK56945.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei FMH] gi|147750124|gb|EDK57195.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei JHU] gi|148027104|gb|EDK85125.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei 2002721280] gi|157807498|gb|EDO84668.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 406e] gi|157939081|gb|EDO94751.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei Pasteur 52237] gi|160698660|gb|EDP88630.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei ATCC 10399] gi|169652605|gb|EDS85298.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei S13] gi|184214906|gb|EDU11949.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1655] gi|217395983|gb|EEC36000.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 576] gi|225932478|gb|EEH28477.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei Pakistan 9] gi|237505572|gb|ACQ97890.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei MSHR346] gi|238524225|gb|EEP87659.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei GB8 horse 4] gi|242140310|gb|EES26712.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1106b] gi|243063469|gb|EES45655.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia mallei PRL-20] gi|254220692|gb|EET10076.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 1710a] Length = 564 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 180/574 (31%), Positives = 274/574 (47%), Gaps = 30/574 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A+ +H + ++AR+ R + S + ++ L+P P L C +AA + Sbjct: 11 PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 A+ K+++ DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 65 ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVD G S D + A +GIDV+V DHH A A+VNPN+ Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 H+ GV+F VL+ + LR L LLDLVAL TV DVV L G NR Sbjct: 185 SKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRV 244 Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R A + R +A +LG+ +GP +NA GR+ + +LG Sbjct: 245 LVAQGLQRIRNGRMQPGIAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIEC 304 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L +DD LA +LD +N+ RR +E+ M +QA A + + D +A+ I + WH Sbjct: 305 LTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQ 362 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVK 436 G++G++A RLKE+F RP+F + +DG GSGRSI GF + + E ++V Sbjct: 363 GVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVT 422 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAG+T+E N R F+ A + V + DG L + ++++L Sbjct: 423 FGGHAMAAGVTLETANVPRFAAAFETVAREWLSDDALARVIETDGDLEDAYFTPQVVELL 482 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + A +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 483 D-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL-TRGRQRFNAIWFNHAE------ 533 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + L + W G+ R QL V A+ Sbjct: 534 ---PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564 >gi|301632861|ref|XP_002945498.1| PREDICTED: single-stranded-DNA-specific exonuclease recJ-like, partial [Xenopus (Silurana) tropicalis] Length = 593 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 265/581 (45%), Gaps = 31/581 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 ++ A A+ ++ I ++AR+ R V A L+ ++ L+P P+ L Sbjct: 30 KIIVRDTPPRSAWAL-EQAGIHPLLARLYAARGVC---APGELDDALARLLP-PVTLRGT 84 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137 +AAR + AI + ++I+I DYD DGA + A+ +R L + + +PDR+VDGYG Sbjct: 85 QEAARLLADAIASGQRIVIVADYDCDGATACAVAVRGLRLLGAHHVDYLVPDRVVDGYGL 144 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P + + GA L++TVD G S + ++ A G+ V+V DHH E A A+VNP Sbjct: 145 TPPIARRVHARGADLLVTVDNGIASVEGVREAKALGLAVLVTDHHLPGPELPVADAIVNP 204 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255 N+ + GVVF VL+ + LR L LL LVAL TV DVVP Sbjct: 205 NQPGCTFESKAMAGVGVVFYVLLALRAELRARAIFDATSQPRLEPLLPLVALGTVADVVP 264 Query: 256 LIGLNRAYVVKGLMVARRQGNPG--LKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R P + T + G+ +GP INA GR+ + Sbjct: 265 LDANNRRLVAQGLKRVRAGAMPAGLAALFTAARRKAEQATTFDFGFALGPRINAAGRLAD 324 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIV 372 LG L++DD LA +LD +N RR +E M EQA D + Sbjct: 325 MTLGIECLLTDDPARALELARQLDAINHERREIEGGMREQAMLLAENLFDASAPPPPAVS 384 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V +H G+VG++A+R+K++ RP+F + + + GSGRSI GF + + Sbjct: 385 VFDPDFHEGVVGIVASRIKDQLHRPTFVFAASSAPGKAHELKGSGRSIAGFHLRDALDLV 444 Query: 429 --VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 G+++K GGHAMAAG TV +F F + A + T + DG + Sbjct: 445 AKRHPGVVLKFGGHAMAAGCTVAGAHFATFERAFAQVAQERLDTATLTRRLETDGPVAPE 504 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAI 544 + L+D+L +G G P F ++ + R+V HL + + + + I Sbjct: 505 YLRADLVDLLAR-EVWGQGFAPPTF-SEELQVLNQRLVGEGKNHLSLKLLHR-GQPVDGI 561 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 F ++ + L V+ WRG +R Q Sbjct: 562 WFGHTE---------PLPRQALLAFRLDVHEWRGERRVQFV 593 >gi|116619525|ref|YP_821681.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Solibacter usitatus Ellin6076] gi|116222687|gb|ABJ81396.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Solibacter usitatus Ellin6076] Length = 582 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 190/584 (32%), Positives = 280/584 (47%), Gaps = 24/584 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RWV + ALA K +P ARVL R D A+ FL P+ L DPL + Sbjct: 13 RWVLPAPDAAVVAALAAALKIGMP--AARVLAARGFGDADAARRFLEPAFEELH-DPLSM 69 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A RI +AI + E+I+I+GDYDVDG SV L+ + + A ++P R+ DGY Sbjct: 70 RDMPAAIERIARAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYHVPHRLKDGY 129 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G P ++E +G +LI++VD G + + ++ A GIDVIV DHH ++E PA A++ Sbjct: 130 GMRPEVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPETELPPALAVL 189 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NPNRLD + +LC AGV F V+ + + + S L L A+ATV DVVP Sbjct: 190 NPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGW-PADKVRRVSESFLKLAAIATVADVVP 248 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIG 312 L G NR V GL N GL+AL++ + P A + + I P +NA GR+ Sbjct: 249 LTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGRMD 308 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + L ++ D++ LA +L N R+ +E+ + E E + S +V Sbjct: 309 TARAVVELFLTSDAERARELAKQLHEQNAERQAVEAEIRETCEQIAV-----DGAESALV 363 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + WH G++G++A+RL E+ RP F +S EDG GSGRSI F + + + Sbjct: 364 YYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALES--MP 421 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + +K GGH AAG+T+E + F FA + A +ID VL +N Sbjct: 422 ELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINEQ 481 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 L P+G GNP P+FA N ++ S V HL++ Q+ L A+ Sbjct: 482 TTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVR-QNGRGLSLKAWNFA-- 538 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYW---RGSKRCQLRVLDASPV 592 G R+ + +L + + RG + D P Sbjct: 539 --ARVGELPPGARVDLAFNLEEDAYSAARGYPAWAAILRDVKPA 580 >gi|317405241|gb|EFV85578.1| single-stranded-DNA-specific exonuclease [Achromobacter xylosoxidans C54] Length = 566 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 180/565 (31%), Positives = 269/565 (47%), Gaps = 27/565 (4%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 + I ++AR+ R V PS L+P P LT AA + AI +K Sbjct: 20 EASGIHPLLARLWAARGVVHPDQTRLAWPS---LLP-PAGLTHSTHAAGVLADAIQAGKK 75 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KFINEGAQ 151 ++I DYD DGA + A+ +R LS + + +P+R GYG +P+++E + Sbjct: 76 LLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRAGKPD 135 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +IITVD G S D + A GI V++ DHH A A+VNPN+ +L Sbjct: 136 IIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPDALAIVNPNQPGCGFPSKNLAG 195 Query: 212 AGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 GV+F +++ + LR+ + L +L DLVAL TV DVV L NR V +GL Sbjct: 196 VGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQ 255 Query: 270 VARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R PGL+AL +LG+ +GP INA GR+ + +LG L +DD Sbjct: 256 RMRSGRLQPGLRALFAVAGREPRSANGFDLGFALGPRINAAGRLADMSLGIACLTTDDEA 315 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 + +A +LD +N+ RR +E+ M EQA + D + + V WH G+VGL+A Sbjct: 316 QALEMARELDNINRERRSIEAEMREQAL--AAMEAPDAAPGATVCVFDPGWHQGVVGLVA 373 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445 +RLKEKF RP+ A + D + GSGRSI + ++ ++ K GGHAMAAG Sbjct: 374 SRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDVLDLVSKRHPNLIRKFGGHAMAAG 433 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ R +F F + PV + DG L + N + +L+ +GAG Sbjct: 434 LTLGRNDFPAFAPAFDAAVRELTGRDSFEPVIETDGSLESGYANAEVAGLLQQ-QVWGAG 492 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P+F +++ R+V HL+++ E + + AI F QS +R+ Sbjct: 493 FAAPLFLDEFV-VRNQRLVGEKHLKLSLE-RGQQRFDAIWFGHD---------QSLPERI 541 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590 L N W G QL + A+ Sbjct: 542 QAAYRLEQNVWNGMVSVQLVIEHAA 566 >gi|311107119|ref|YP_003979972.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter xylosoxidans A8] gi|310761808|gb|ADP17257.1| single-stranded-DNA-specific exonuclease RecJ [Achromobacter xylosoxidans A8] Length = 566 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 180/570 (31%), Positives = 273/570 (47%), Gaps = 27/570 (4%) Query: 29 RALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 +A I + I ++AR+ R V+ + + L+P P LT D AA + A Sbjct: 14 QACHILEASGIHPLLARLWAARGVTHPDQTQL---AWKSLLP-PNGLTHSDHAAGVLADA 69 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KF 145 I +K++I DYD DGA + A+ +R LS + + +P+R GYG +P++++ + Sbjct: 70 IQAGKKLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVDLAVRH 129 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 +IITVD G S D + A + GI V++ DHH A A+VNPN+ Sbjct: 130 RAGKPDIIITVDNGIASVDGVAAANDAGIGVVITDHHLPGDTLPAALAIVNPNQPGCGFP 189 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAY 263 +L GV+F +++ + LR+ + L +L DLVAL TV DVV L NR Sbjct: 190 SKNLAGVGVIFYMMLALRAELRRRGVYAADGGPRLDALSDLVALGTVADVVKLDANNRLL 249 Query: 264 VVKGLMVARRQG-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R PGL+AL +LG+ +GP INA GR+ + +LG L Sbjct: 250 VTQGLQRMRAGRLQPGLRALFAVAGREPRAANGFDLGFALGPRINAAGRLADMSLGIACL 309 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 +DD + +A +LD +N+ RR +E+ M EQA A + + + + V WH G Sbjct: 310 TTDDEAQALEMARELDNINRERRTIEAEMREQALA--AMEAPNAAAGATVCVFDPGWHQG 367 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439 +VGL+A+RLKEKF RP+ A + D + GSGRSI + + ++ K GG Sbjct: 368 VVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDALDLVSKRHPNLIRKFGG 427 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGLT+ R +F F + PV + DG L + N + ML+ Sbjct: 428 HAMAAGLTLGREDFAAFAPAFDAAVRELTGRDTFEPVIETDGSLESGYANADVAGMLQQ- 486 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +GAG P+F +++ R+V HL+++ E + + AI F Q Sbjct: 487 QVWGAGFAAPLFLDEFV-VRNQRLVGEKHLKLSLE-RGHQRFDAIWFGHD---------Q 535 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 S + + L N W G QL + A Sbjct: 536 SLPEHIQAAYRLEQNVWNGMVSVQLVIEHA 565 >gi|319943693|ref|ZP_08017974.1| single-stranded-DNA-specific exonuclease RecJ [Lautropia mirabilis ATCC 51599] gi|319742926|gb|EFV95332.1| single-stranded-DNA-specific exonuclease RecJ [Lautropia mirabilis ATCC 51599] Length = 586 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 282/581 (48%), Gaps = 32/581 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 + + Q + ++AR+L R + D + + L+P P + Sbjct: 11 RLHTRPVDLRARQTLLQA-GVDPLLARLLAARGIRHPDEIRL----DLAGLLP-PDTMRG 64 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +A R+ +AI + E I++ GDYD DGA ++A+ ++ L + +P+R +GYG Sbjct: 65 LPEAVARLSRAIDDQEPILVVGDYDCDGATAIAIAVQGLRMMGATIDYLVPNRFENGYGL 124 Query: 138 NPSLMEKFINEG----AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 P +++ + L++TVD G S +++A + G+ VIV DHH A A Sbjct: 125 TPEVVDAALVHPRLGRPALLLTVDNGIASVAGVEHANSLGLPVIVTDHHLPAETLPAALA 184 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCD 252 +VNPN+ +L GV+ VL+ + RQ + L L+DL AL TV D Sbjct: 185 IVNPNQPGCPFPDKNLAGVGVMLYVLIALRSHRRQLGRFDGPPPSLSPLMDLAALGTVAD 244 Query: 253 VVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGR 310 VVPL NR V GL R + PG+ AL++ S+ + A +LG+ IGP INA GR Sbjct: 245 VVPLSHNNRVIVNAGLARIRAGRARPGIAALLQVARRSAHTLAATDLGFAIGPRINAAGR 304 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + ++G L++ D LA +LD +NQ RR +ES M E+A A + D A Sbjct: 305 LADMSIGVECLLATDLARATQLATELDQINQQRRDLESNMREEALALIGEPAAD---ART 361 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA-- 428 +V+ D WH G++GL+A+R+KE++ RP+ A++ ++DG GSGRSI G + ++ Sbjct: 362 LVIHDDNWHHGVIGLVASRIKERYHRPTIALAPDQDGMLRGSGRSIAGVHLRDVLDLVDK 421 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 G+LVK GGHAMAAGLT+ + + DG L A A+ Sbjct: 422 RHPGMLVKFGGHAMAAGLTLPADRLDDFRQALEDAVRTLARDDCFERDVTTDGALPADAI 481 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD--SETLQAIAF 546 +I +++L++ +G G P P+F+ +++ R++N HL++ D + AI F Sbjct: 482 HIGTLELLDT-QVWGQGFPPPLFSGR-FNIRTQRLINNRHLKLELSPADDPGVRMSAIFF 539 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 E L+ + + +RG L++ Sbjct: 540 GRTEALPPEALLS---------YRIQRDDYRGRDAVSLQID 571 >gi|126439504|ref|YP_001059614.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 668] gi|126218997|gb|ABN82503.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei 668] Length = 564 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 179/574 (31%), Positives = 274/574 (47%), Gaps = 30/574 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A+ +H + ++AR+ R + S + ++ L+P P L C +AA + Sbjct: 11 PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 A+ K+++ DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 65 ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVD G S D + A +GIDV+V DHH A A+VNPN+ Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 H+ GV+F VL+ + LR L LLDLVAL TV DVV L G NR Sbjct: 185 SKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRV 244 Query: 263 YVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRL 320 V +GL R A + R +A +LG+ +GP +NA GR+ + +LG Sbjct: 245 LVAQGLQRIRNGRMQPGIAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIEC 304 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L +DD LA +LD +N+ RR +E+ M +QA A + + D +A+ I + WH Sbjct: 305 LTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQ 362 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVK 436 G++G++A RLKE+F RP+F + +DG GSGRSI GF + + E ++V Sbjct: 363 GVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVT 422 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAG+T++ N R F+ A + V + DG L + ++++L Sbjct: 423 FGGHAMAAGVTLDTANVPRFAAAFETVAREWLSDDALARVIETDGDLEDAYFTPQVVELL 482 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + A +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 483 D-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL-TRGRQRFNAIWFNHAE------ 533 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + L + W G+ R QL V A+ Sbjct: 534 ---PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564 >gi|288869877|ref|ZP_06112139.2| single-stranded-DNA-specific exonuclease RecJ [Clostridium hathewayi DSM 13479] gi|288869295|gb|EFD01594.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium hathewayi DSM 13479] Length = 564 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 169/573 (29%), Positives = 278/573 (48%), Gaps = 26/573 (4%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82 Q + H I + AR++ NR++ + + +L S++ L P +L D D A Sbjct: 3 QTKKADFHEMAGIHHITPVTARIIRNRDIVGAEAVEKYLRGSLKDLY-SPHLLKDMDLAV 61 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 + ++I I GDYD+DG S L+ R L+ N + IPDRI DGYG N S++ Sbjct: 62 EILKGKTEQGKRIRIVGDYDIDGVCSTYLLYRALTRIGANVDYEIPDRIKDGYGINESII 121 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-----QVKSEEIPAYALVNP 197 ++G I+T D G + + ++ A G+ V++ DHH + + PA A+VNP Sbjct: 122 RAAADDGVDTILTCDNGIAAVEQVRLAKELGLTVLITDHHDIMQEEGRDVLPPADAVVNP 181 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + +C V + ++ +Y VP L S+L+ A+ATV DV+ L Sbjct: 182 KQSGCSYPYPEICGGMVAYKLVKALYEAF----SVPEEEWL-SMLEFAAIATVGDVMKLR 236 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316 NR V +GL + GL LIER + I+A ++G++IGP +NAGGR+ + L Sbjct: 237 DENRIIVKEGLKRIADTKSIGLLKLIERNDLDKDHISAYHIGFVIGPCLNAGGRLQTAKL 296 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL+ +D +E + LAM+L LN R+ M E+A A+V D + V+V Sbjct: 297 ALALLLCEDGEEADRLAMELKELNDQRKDMTKQGTEEAIAQVEQCYRDDK---VLVAYLP 353 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 H + G++A RL+E++ +P+F ++ + +G GSGRSIE + + +L+K Sbjct: 354 SCHESLAGIIAGRLREQYQKPAFVLT-DGEGCVKGSGRSIEQYHM--FEGLVKVRDLLLK 410 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH MAAGL++E+ N + A + ID + ++ LI+ L Sbjct: 411 FGGHPMAAGLSLEKENIDEFRRRLNEDAE--LTEDDFVRRIWIDVPMPFDYISEPLIEEL 468 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLG 554 E P+G GN P+FA ++S+RV+ ++ + + + A+ F T L Sbjct: 469 ELLEPFGQGNEKPLFAQKGLHIRSVRVLGKNRNAVKFSLADEKGTPMDAMLFTDGDTFLE 528 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 E + + V + VN + GS+ Q+ + Sbjct: 529 EL---GNRRVIDVIYYPTVNEYNGSRTLQVIIK 558 >gi|282919410|ref|ZP_06327145.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus C427] gi|282317220|gb|EFB47594.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus C427] Length = 757 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 157/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K +I +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIEKIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++DD +E LA +++ N+ R+ + + + E+A A + + +++ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEQFNRERKDIVATITEEAMAMAEMKVKNGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV +D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 568 >gi|144897176|emb|CAM74040.1| single-stranded-DNA-specific exonuclease RecJ [Magnetospirillum gryphiswaldense MSR-1] Length = 495 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 209/473 (44%), Positives = 297/473 (62%), Gaps = 8/473 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN 62 D AFLGVE S++G RW S G E A ++Q+ A+P+I+ RVL R + +D A+ FL+ Sbjct: 4 DAAFLGVERSLTGRRWQSSGGDE--RLAATLSQRLALPEIIGRVLAARGIGLDEAETFLS 61 Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P++R L+PDP L D DKAA RI A+ E I IFGDYDVDGA S AL+ FL+ Sbjct: 62 PTLRALLPDPSHLKDMDKAAARIASAVMAGEPIGIFGDYDVDGATSSALLNTFLTAIGAT 121 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 A ++IPDR+ +GYGPN + K +GA++++TVDCG+T++D L+ A GIDVIV+DHH Sbjct: 122 ALVHIPDRMSEGYGPNLPALLKLAAQGAKVVVTVDCGTTAFDPLEGAAEAGIDVIVVDHH 181 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLL 239 + + A+A++NP RLDD S GHL A GV FLV+V + R+L++ DLL Sbjct: 182 EAEPHLPRAFAIINPKRLDDDSPHGHLAAVGVTFLVVVAVNRVLKEAGWYGPARPAPDLL 241 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 LD+VAL TVCDVVPL G+NRA V +GL V ++ N GL AL + I + +LGY Sbjct: 242 QWLDVVALGTVCDVVPLWGVNRALVTQGLKVMAKRANVGLAALSDVAGIKERPDSYHLGY 301 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 ++GP +NAGGR+G+S LGSRLL + D +A +LD N+ R+ +E+A+L +A +V Sbjct: 302 VLGPRVNAGGRVGQSALGSRLLSTHDPLLAADIARQLDGYNKERQEIEAAVLLEAIEQV- 360 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + D ++V G+ WHPG++G++A RLKE++GRP+ I+ + +G GSGRS+ G Sbjct: 361 -EGRDDDGLPLVVAAGENWHPGVIGIVAGRLKERYGRPACVIA-LDGDEGKGSGRSVTGL 418 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 D+G + A ++G+L GGHAMAA R G F + + Sbjct: 419 DLGCAIIAARQQGLLKADGGHAMAARSLEMRDRLGAFRAFLADRLQAQLTDEL 471 >gi|254469311|ref|ZP_05082716.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp. JE062] gi|211961146|gb|EEA96341.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp. JE062] Length = 470 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 235/455 (51%), Positives = 307/455 (67%), Gaps = 2/455 (0%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP 63 + LGV+ S+S W L +G+++ALAI Q+ +P++V RVL R+V ++ A FLNP Sbjct: 13 RVVLGVKKSLSARVWRERLDDQGLSQALAIAQRTELPEVVGRVLAGRSVPLEDASGFLNP 72 Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA 123 SI+ LMPDP L D DKA R+ A+ KI +FGDYDVDGA S AL+ R+L V Sbjct: 73 SIKDLMPDPSKLVDMDKACARVADALQAGVKIAVFGDYDVDGATSSALLKRYLMQLGVEP 132 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 ++YIPDRI+DGYGPNP+ + + GA+L+ITVDCGSTS++A + A G++V+V+DHHQ Sbjct: 133 DVYIPDRIIDGYGPNPTAINQLHAGGARLLITVDCGSTSFEAFEEAKRLGLEVVVLDHHQ 192 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSL 241 V +ALVN NR DDLSGQG+L A GV FL LV + R LR+ L+ L Sbjct: 193 VDENFPEVHALVNANRQDDLSGQGYLAAVGVTFLFLVGLNRELRRRGAFAQRAEPRLMDL 252 Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI 301 LDLVAL TVCDVVPL GLNRAYVV+GL V R+ N GL L + +S T +LGYM+ Sbjct: 253 LDLVALGTVCDVVPLKGLNRAYVVQGLKVMARRENIGLSCLADISRLSGKPTPYHLGYML 312 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INAGGRIG+S LG +LL SDD E E +A L+ LNQ R+ ME+ MLE+ E + + Sbjct: 313 GPRINAGGRIGDSALGMKLLSSDDRAEGERIAATLERLNQERQAMEAVMLEEGEGQAFQK 372 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + +V++ D WHPG+VGL+A+RLKE++ RP+FA++F E G G GSGRSI G D+ Sbjct: 373 MEGAVPPAVLLTGADGWHPGVVGLIASRLKERYRRPAFAMAFNEQGVGTGSGRSIMGVDL 432 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456 G V AVE G+LVKGGGHAMAAGLT+++ Sbjct: 433 GSAVRAAVEAGLLVKGGGHAMAAGLTIQKDKVREF 467 >gi|269217260|ref|ZP_06161114.1| single-strand DNA-specific exonuclease [Slackia exigua ATCC 700122] gi|269129397|gb|EEZ60482.1| single-strand DNA-specific exonuclease [Slackia exigua ATCC 700122] Length = 1107 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 151/578 (26%), Positives = 256/578 (44%), Gaps = 24/578 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + + + +P VA +V+ V +I+ A+ FL+P + +P + Sbjct: 8 QFEIKDACPIAVSVLMSEFRLPRFVAATMVSHGVKTIEDARLFLSPDLERDWLNPYTIPG 67 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +AA R+ A+ E+I++FGD+D+DG ++ ++ R L +A IP R +GYG Sbjct: 68 MQEAADRVEAALRAHERILVFGDFDLDGISATTVLTRGLRALDGDACWLIPRRFEEGYGM 127 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + + + + L+++VDCG ++ + G+DV++ DHH+ Sbjct: 128 SEASIARALESKPDLVVSVDCGISNGKEARRFNELGVDVVITDHHEPGESMPECIVCDPK 187 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 S L GV ++ + + N S D AL TV D++PL+ Sbjct: 188 TDPGCKSSI--LAGVGVALKLVQALGARFGKPNLW------RSFTDFAALGTVADLMPLV 239 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316 G NRA V GL P + AL+ N+S P+TA NL + + P +NA GR+G ++L Sbjct: 240 GENRALVSDGLARMNEHPRPSIAALVGVCNVSGKPLTATNLSFSLIPRLNAAGRMGNADL 299 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 + LL+ D A +LD +N RR +E+ + + A A+ +VV G+ Sbjct: 300 AAELLMEDGFDAAAEKAARLDAVNDQRRAIEADLAKVALAQAEDIYHGQ---HALVVSGE 356 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G+ G++A+RL K+G P+ S E + GSGRS+ ++ + A IL + Sbjct: 357 GWHEGVKGIVASRLVSKYGVPTILFS-IEGDEARGSGRSVGQVNL--FKAVAQTSDILTR 413 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A G+T+ + + +P P+ ID + + I ++ L Sbjct: 414 FGGHEAAVGVTLPADKLPEFTERLCAYMDA-LPESSFHPLLSIDADVRLGELTIDAVEAL 472 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 E P+G NP P N ++ + R V HL T + I F P G Sbjct: 473 ERLAPFGQENPTPRLIARNVRISNCRAVGAAKNHLSCTLTDGIHH-VDGIMF----HPAG 527 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + S G + V+ WRG ++ + + P+ Sbjct: 528 IEDLISCGCVVDAVFEAQVDEWRGRRKVKAMLQSIEPL 565 >gi|110834512|ref|YP_693371.1| single-stranded-DNA-specific exonuclease RecJ [Alcanivorax borkumensis SK2] gi|110647623|emb|CAL17099.1| Single-stranded-DNA-specific exonuclease RecJ [Alcanivorax borkumensis SK2] Length = 574 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 176/564 (31%), Positives = 266/564 (47%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++AR+L R V+ L+ ++ L P P T A ++Q +I I Sbjct: 23 DVPPMLARILAGRGVTDPAL---LDLGLKRL-PHPERFTGLRGAVALLLQGRTEQWRICI 78 Query: 98 FGDYDVDGAASVALMMRFLSHCS-VNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155 GDYD DGA + LM+R L + +PDR GYG +P++++ LIIT Sbjct: 79 VGDYDADGATATTLMVRGLERLGYARPDFLVPDRFEYGYGLSPAIVDLAKELYDPDLIIT 138 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD-LSGQGHLCAAGV 214 VD G S D + A QG+ V++ DHH A ALVNP +L GV Sbjct: 139 VDNGIASVDGVAAARAQGMRVLITDHHLPGETLPEADALVNPRLPGCEDFPATNLAGVGV 198 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 F +L+ + R LR+ + LLDLVAL TV DVV L NR V +GL R Sbjct: 199 AFYLLMDLQRALREQGVAASAP-ITDLLDLVALGTVADVVVLDDANRVLVEQGLRRIRAG 257 Query: 275 G-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL++ + A ++G+ +GP +NA GR+ + G L++ E + Sbjct: 258 KGCPGIRALLQVAGRDPNRVLAADMGFAVGPRLNAAGRLTDMTQGIACLLAQTDAEATEM 317 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A LD +N+ RR +E M + A +V D + + + G WH G+VG+LA+R+KE Sbjct: 318 AQDLDTINRERRSIEHGMRDAAMEEVARLDAD-NLPAGLCLYGKEWHEGVVGILASRVKE 376 Query: 393 KFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 RP A + ++ G+ GSGRSI G + + G+L K GGHAMAAGL++E Sbjct: 377 AIHRPVIAFAPAQQRGQLKGSGRSIPGLHLRDALDAVATANPGLLSKFGGHAMAAGLSLE 436 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F+K ++ + + DG L+ +++ ++L P+G G P P Sbjct: 437 LDKLEDFKAAFEKAVGELLSPKALERIVETDGELDDHELSLTNAELLSHRFPWGQGFPAP 496 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ R+V HL++T S + AI F V L + + RG Sbjct: 497 SFDGE-FEVLKHRIVGERHLKLTLGLPGISGVIDAIHFNVAVEALPSRISKVRG-----V 550 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN +RG + QL P+ Sbjct: 551 YRLEVNEFRGQRNPQLLFEHLIPL 574 >gi|107028704|ref|YP_625799.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia cenocepacia AU 1054] gi|105897868|gb|ABF80826.1| exonuclease RecJ [Burkholderia cenocepacia AU 1054] Length = 565 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 184/581 (31%), Positives = 271/581 (46%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + HL GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313 L NR V +GL R A + R TA +LG+ +GP +NA GR+ + Sbjct: 238 LDSNNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT++ N R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L V L + W G R QL V A+ Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564 >gi|325142112|gb|EGC64538.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis 961-5945] gi|325198045|gb|ADY93501.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis G2136] Length = 566 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q +V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAK-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|313906022|ref|ZP_07839375.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium cellulosolvens 6] gi|313469135|gb|EFR64484.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium cellulosolvens 6] Length = 611 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 167/618 (27%), Positives = 281/618 (45%), Gaps = 62/618 (10%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV---------------SIDYAKDFL 61 +W+ + N + +K I ++ R++ NR+V + + + ++ Sbjct: 4 KWMVAAKRADFN---GLGKKLGIDPVIVRLIRNRDVFSEEDTAVLPDGRTLAEEKIEKYI 60 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 S++ L DP ++ D DK I+ AI KI I GDYD+DG S +++ L Sbjct: 61 RGSLKDLY-DPHLMKDMDKGCAVILSAIREGLKIRIIGDYDIDGIMSSYILLTGLKEIGA 119 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + ++ IP+RI DGYG N +L+ + +G L++T D G + + A + G+ +V DH Sbjct: 120 DVDVRIPERIRDGYGLNENLVRQAAEDGVNLMVTCDNGIAAAAQIALANSLGMRAVVTDH 179 Query: 182 HQVKSEEI------------------------PAYALVNPNRLDDLSGQGHLCAAGVVFL 217 H V + PA A++NP+R DD LC AGV F Sbjct: 180 HAVPFADHEEGEPGTEGMEKTEEGKRREYLLPPAEAVINPHRADDAYPFEGLCGAGVAFK 239 Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277 ++ ++ + D + L VA+AT+ DV+ L NR V +GL R NP Sbjct: 240 LVSALFDEVLTDAAYAVKKK-EDYLQFVAIATIGDVMELKDENRILVREGLKRLHRTENP 298 Query: 278 GLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 GL LI + I + ++G++IGP +NA GR+ + +L + +E +LA L Sbjct: 299 GLLELIRQNGIEKEAVDVYHIGFVIGPCLNASGRLDTAERALEMLCAKTVEEAAVLAGDL 358 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 LN +R+ M E+A + V + ++ V+VV H + G++A RLKE + R Sbjct: 359 VSLNASRKEMTIQGAEKAISMV--EEGPMRCDRVLVVYLPDCHESLAGIIAGRLKEHYNR 416 Query: 397 PSFAISF------EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 PSF + + GSGRSIE + + + ++ K GGH MAAG+++ + Sbjct: 417 PSFVFTDADGADENGEPMVKGSGRSIETYSMY--EELCKCKDLMTKFGGHPMAAGVSLPK 474 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +L + TP ID + S + LI LE P+G GNP P+ Sbjct: 475 EKLDQLRRELNGNC--TLTEEQMTPKVTIDVPMPLSYIREDLIRQLEVLKPFGNGNPKPL 532 Query: 511 FAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 FA +++ RV +M ++D ++ A+ F G +++ +R+ V Sbjct: 533 FAQSGMMVRNPRVFGKNRNVCKMKLVAEDGCSMDAVMFG-DGDEFIDYVQSH--RRISVI 589 Query: 569 GHLCVNYWRGSKRCQLRV 586 + ++ W+G Q+ V Sbjct: 590 YYPGIDTWQGRNSLQVTV 607 >gi|115374731|ref|ZP_01462008.1| single-stranded-DNA-specific exonuclease RecJ [Stigmatella aurantiaca DW4/3-1] gi|115368302|gb|EAU67260.1| single-stranded-DNA-specific exonuclease RecJ [Stigmatella aurantiaca DW4/3-1] Length = 510 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 170/523 (32%), Positives = 269/523 (51%), Gaps = 22/523 (4%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 A R+ +A+ EKI ++GDYDVDG S +L+ FL YIP R+ +GYG Sbjct: 1 MTSAVERLARALRLGEKITLYGDYDVDGVCSTSLLTLFLRQLGAQPATYIPHRLGEGYGL 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N M++ EG +L++T+DCG TS + A G+DV+++DHH V + A A++NP Sbjct: 61 NLQAMDRIAQEGTRLLVTLDCGITSVAEVARARELGMDVVIVDHHTVPTTLPAAVAVLNP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 ++ LCAAGV F + + + + LR + L L+DLVALATV DVVP Sbjct: 121 HQPGCDYPTKTLCAAGVAFNLCMGLRKHLRDEGFFATRKEPLLKGLMDLVALATVADVVP 180 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGE 313 L G NR V GL PG++AL E + P+TA +G+ +GP INA GR+ + Sbjct: 181 LTGANRILVAHGLQELTAARRPGVRALKEVAGVEPEAPVTAGQVGFRLGPRINAAGRLHD 240 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++LG +LL ++ ++ LA LD N R+ +ES++L +A Q + + A +V+ Sbjct: 241 ASLGLQLLTAESLEDARRLAGVLDRANAERQGIESSILTEAL----KQAESLPHARGLVL 296 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WHPG++G++A+R+ E+F RP+ + E G G GS RSIEGF + + + Sbjct: 297 YAEGWHPGVIGIVASRVVERFHRPTVMVGVNE-GIGKGSARSIEGFHLYDALHGC--ADM 353 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGLT+E + F++ A + P K+D V+ ++ + Sbjct: 354 LSRFGGHKYAAGLTIEAGRLPAFREAFERIALERLTPEDLIPRCKVDAVVTPHELDERAV 413 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV----NLAHLQMTFESQDSETLQAIAFRVY 549 + L+ GP+G GNP PV ++ RV+ H + D+ + AI F + Sbjct: 414 ESLQRLGPFGQGNPEPVLVLRK-QMARPRVLPPKTGHGHAHLKLALVDAPGVDAIGFGMA 472 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + + ++ +RG +R LR+ D Sbjct: 473 DR------LSLVEGPVDLAFQVGMDTFRGQRRVSLRLKDLRIA 509 >gi|296158325|ref|ZP_06841156.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. Ch1-1] gi|295891269|gb|EFG71056.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. Ch1-1] Length = 568 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 184/572 (32%), Positives = 269/572 (47%), Gaps = 32/572 (5%) Query: 32 AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 I +H + ++AR+ R V D + + L+P P+ L C+ AA + AI Sbjct: 15 EILTRHGLHPVLARLYAARGVCMPDEIET----GLARLVP-PVALKGCEDAAALLADAIQ 69 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFIN 147 + ++++ DYD DGA + A+ +R L +P+R GYG P ++ + Sbjct: 70 SKRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEIVALAARNAA 129 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 L+ITVD G S D +Q A GIDV+V DHH E PA A+VNPN+ Sbjct: 130 GKPDLLITVDNGIASVDGVQAANALGIDVLVTDHHLPGDELPPARAIVNPNQPGCTFPSK 189 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 + GV+F VL+ + LR+ L LLDLVAL TV DVV L G NR V Sbjct: 190 CIAGVGVMFYVLLALRAELRRRGAFNDNFPEPRLDGLLDLVALGTVADVVKLDGNNRVLV 249 Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLI 322 +GL R+ A + R +A +LG+ +GP +NA GR+ + +LG L Sbjct: 250 AQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSDMSLGIECLT 309 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 +DD LA +LD +N+ RR +E+ M +QA + D + I + WH G+ Sbjct: 310 TDDIGRAWDLAQQLDTMNRERREIEAGMQQQALDDLSA--IDPDGTTTITLFNPDWHQGV 367 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 +G++A RLKEKF RPSF + +D GSGRSI GF + + E G++VK G Sbjct: 368 IGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSIAGFHLRDALDLISKREPGLIVKFG 427 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLT+ + R F+ + + + DG L + ++ML+ Sbjct: 428 GHAMAAGLTLAAADVPRFTAAFEAVGREWLSEEALSRTVETDGELEDAYFTPQFVEMLD- 486 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 A +G G P PVF+ + S +V HL++ + + AI F T Sbjct: 487 AAVWGQGFPAPVFSGE-FDIVSQALVKDKHLKLQLV-RGRQRFNAIWFNHTDT------- 537 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 538 --LPARTTVAYRLASDTWNGVSRVQLIVEHAA 567 >gi|329903723|ref|ZP_08273599.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae bacterium IMCC9480] gi|327548244|gb|EGF32943.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 176/579 (30%), Positives = 268/579 (46%), Gaps = 26/579 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + Q I ++AR+ V R + L+ + ++ P L Sbjct: 3 RLATRAASPRDTERLIQD-GIHPVLARLYVARGLLDA---RELSSELSSMIA-PSGLLHI 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 D AA + AI ++++I DYD DGA + A+ +R L + + +P+R GYG Sbjct: 58 DAAAIFLADAIAAKKRMVIVADYDCDGATACAVGLRGLRMLGADVDFIVPNRFEYGYGLT 117 Query: 139 PSLME-KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++ + +I+TVD G S D + A +GIDV+V DHH A +VNP Sbjct: 118 PEIVALAQAEKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNP 177 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVP 255 N+ + +L GV+F VL+ + LR+ + L LLDLVAL TV DVV Sbjct: 178 NQPECGFPSKNLAGVGVMFYVLLALRAELRKRGIFDQHSQPKLDVLLDLVALGTVADVVK 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERV-NISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R + + G+ AL + + +LG+ +GP +NA GR+ + Sbjct: 238 LDANNRILVAQGLKRMRAGRMHAGVAALFRASAREARKASPFDLGFALGPRLNAAGRLAD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG L +DD +A +LD +N+ RR +E+ M + A + + Q S I V Sbjct: 298 MSLGIECLTTDDEGRAWAIAQQLDAINRERRDIEADMQDTALELL--DSFNPQDNSTISV 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++A+RLK+KF RP+ + DG GSGRSI GF + + + Sbjct: 356 FDAGWHQGVIGIVASRLKDKFYRPTITFAPASDGWIKGSGRSIPGFHLRDALDLVSKHAP 415 Query: 434 --LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + K GGHAMAAGLT+ NF F+ + + V + DG L + Sbjct: 416 TLIDKFGGHAMAAGLTLRAENFDAFAAAFEAVGRSWLTQNQLERVLENDGSLEDAFFTTQ 475 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 ID+L+ A +G G PVF ++ S R++ HL++ E ++ + AI F Sbjct: 476 FIDLLD-AQVWGQGFAPPVFCDE-FRVISQRILKERHLKLQLE-RNGQRFDAIWFGHTDD 532 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G R V L N + G R QL V A Sbjct: 533 ---------LGGRARVAYRLDANEYNGVTRVQLMVEYAE 562 >gi|289663381|ref|ZP_06484962.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 579 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 274/565 (48%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ RV R V+ P + L+ P +L + AA + AI +I++ GD Sbjct: 24 PLLRRVYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A ++G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKSRGWTVLVTDHHLPGEMLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + +LR+ DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 200 LALRSVLRKRGAFAGRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D ++ +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWRQARAIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPMAACLFDAEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ + GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQRFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + + + + Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCPGRAEPLNAIHFNGWRG-------SEPARSVRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V PV Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPVT 576 >gi|57650517|ref|YP_186530.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus COL] gi|87159970|ref|YP_494287.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195447|ref|YP_500251.1| hypothetical protein SAOUHSC_01744 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221750|ref|YP_001332572.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus str. Newman] gi|161509861|ref|YP_001575520.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258450538|ref|ZP_05698600.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A5948] gi|262048626|ref|ZP_06021509.1| hypothetical protein SAD30_1022 [Staphylococcus aureus D30] gi|262051286|ref|ZP_06023510.1| hypothetical protein SA930_1717 [Staphylococcus aureus 930918-3] gi|282920185|ref|ZP_06327910.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A9765] gi|294848665|ref|ZP_06789411.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A9754] gi|304380767|ref|ZP_07363435.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284703|gb|AAW36797.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus COL] gi|87125944|gb|ABD20458.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203005|gb|ABD30815.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374550|dbj|BAF67810.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus str. Newman] gi|160368670|gb|ABX29641.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861696|gb|EEV84495.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A5948] gi|259160923|gb|EEW45943.1| hypothetical protein SA930_1717 [Staphylococcus aureus 930918-3] gi|259163273|gb|EEW47832.1| hypothetical protein SAD30_1022 [Staphylococcus aureus D30] gi|269941121|emb|CBI49507.1| putative single-stranded-DNA-specificexonuclease [Staphylococcus aureus subsp. aureus TW20] gi|282594533|gb|EFB99518.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A9765] gi|294824691|gb|EFG41114.1| single-stranded-DNA-specific exonuclease [Staphylococcus aureus A9754] gi|304340704|gb|EFM06636.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198664|gb|EFU28992.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus CGS01] gi|320140477|gb|EFW32331.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus MRSA131] gi|320144016|gb|EFW35785.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus MRSA177] gi|329314310|gb|AEB88723.1| Single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus T0131] gi|329728355|gb|EGG64792.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus 21189] Length = 757 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG + +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVITLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++D +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|304387849|ref|ZP_07370023.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis ATCC 13091] gi|304338114|gb|EFM04250.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis ATCC 13091] Length = 566 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q +V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|284024692|ref|ZP_06379090.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus 132] Length = 757 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG + +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVITLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDDIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++D +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|221141095|ref|ZP_03565588.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751464|gb|ADL65641.1| putative single-stranded-DNA-specific exonuclease [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 757 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 28/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG + +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTATTILVITLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++D +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDVEEEASFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 349 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 350 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 408 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 468 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 523 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ Q+ + D + E + Sbjct: 524 EPELQDE---QPINILGSVQINEWNGNQSPQIIIQDIAMNEQQILDYR 568 >gi|291562781|emb|CBL41597.1| exonuclease RecJ [butyrate-producing bacterium SS3/4] Length = 573 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 156/581 (26%), Positives = 271/581 (46%), Gaps = 31/581 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILT 76 W+ + N + + + + R++ NR + + + +L ++ L DP + Sbjct: 8 WMLQTKRADFN---GLAMRLGVSPVAVRIMRNRGLLDEREMRKYLYGTLDDLY-DPRQMK 63 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDG 134 + AA I + + +KI I GDYD+DG S ++++ + + IPDRI DG Sbjct: 64 GMETAAGIIEKKLIEGKKIRIIGDYDIDGVCSTYILLKGFHRAAGNGQIDYEIPDRIRDG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-----VKSEEI 189 YG N S++ + +G ++T D G + + A G+ V+V DHH+ Sbjct: 124 YGINESIIRQAAEDGIDTLVTCDNGIAALKEISIAKQLGMTVVVTDHHEVPVDAYGQILP 183 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 PA A+V+P + + +C A V + ++ +IY L + + LL+ A+AT Sbjct: 184 PADAVVDPKQDGETYPYHEICGAVVAWKLINVIYEDLGIPEH-----EWMELLEFAAIAT 238 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAG 308 V DV+ L NR V GL N GL+ L+E+ N+ + ++A ++G++IGP +NAG Sbjct: 239 VGDVMKLQDENRLIVKYGLKKIGSTKNTGLRMLVEKNNLDINNLSAYHIGFVIGPCLNAG 298 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ + + R+L+ D + LA +L LN R+ M + +A +V + Sbjct: 299 GRLKSAKVALRMLLEQDPDRVSGLADELKELNDVRKDMTAKGETEAIEQVERFYMSDK-- 356 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V+VV H + G++A RL+E F +PSF ++ E GSGRSIE + + Sbjct: 357 -VLVVFLPECHESLAGIIAGRLREHFHKPSFVLTRGEQS-AKGSGRSIEAYHMY--QGLC 412 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 +LVK GGH MAAGL++E + + A + P ID + V Sbjct: 413 EVSDLLVKFGGHPMAAGLSIEESDIDEFRRRLNENAK--LTEDDFVPQIWIDVPMPFEYV 470 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546 N ++D L+ P+G GN P+FA + ++++RV+ ++M + + F Sbjct: 471 NEKIVDELKGLEPFGQGNEKPLFAQKSLTIRNVRVLGKNRNVVKMNLVTNTGHPFDGLLF 530 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 L E Q+ + + + VN + G++ Q + Sbjct: 531 ADGDLFLEEQTGQN---TIDMIYYPDVNEYNGTRTLQAIIK 568 >gi|325206324|gb|ADZ01777.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M04-240196] Length = 566 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q + V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNTFPETLPSGQT--TLAVYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVREDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|289668836|ref|ZP_06489911.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 579 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 170/565 (30%), Positives = 269/565 (47%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + + LR DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 200 LALRKALRARGAFAERVEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPMAACLFDAEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ + GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQRFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFHAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + + + + Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRG-------SEPARSVRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V P Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPAT 576 >gi|325127939|gb|EGC50841.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis N1568] Length = 566 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 170/564 (30%), Positives = 263/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q + V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQT--TLAVYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVREDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|168699767|ref|ZP_02732044.1| single-strand DNA-specific exonuclease [Gemmata obscuriglobus UQM 2246] Length = 592 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 177/592 (29%), Positives = 286/592 (48%), Gaps = 28/592 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W L + + + +VA++L+NR V A+ FL+ + L P PL Sbjct: 6 KQWHLLP--ADSSATNRLAGSARVSSVVAQLLLNRGVRDAAAARRFLDSPLGALHP-PLA 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L +AA R+V+A+ +I ++GDYDVDG ++++R L + ++P R+ +G Sbjct: 63 LPGVKEAAERVVRAVTARRRICVYGDYDVDGVTGTSILLRVLGKLGADVQFHVPLRLSEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYA 193 YG N + + G QL+I+VDCG S Q A + G+++IV DHH++K + P Sbjct: 123 YGLNSERLHELYRNGVQLVISVDCGIASIAEAQTARDLGLELIVTDHHEMKMGLDGPLLP 182 Query: 194 LVNPNRLD-----DLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVA 246 + + + G L AGV F + + + + L LL + L A Sbjct: 183 VADVLVHPRLRAAEPYPFGDLSGAGVAFKLAWAVAQRASGSEKVSADLREVLLDSVGLAA 242 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304 L V DVVPL NR +V GL + + GLKAL++ +TAE++G+ + P Sbjct: 243 LGLVADVVPLRDENRVFVRHGLERIKANPSVGLKALLDASGVKPDQVLTAEDVGFKLAPR 302 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GR+G ++ LL + + LA +L+ N +R+ E + A+ V Q D Sbjct: 303 LNAAGRLGCASFAVELLTTQSPTKARQLAEQLEAQNGDRQARERKYTQAAKELVEEQFAD 362 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGK 423 IVV WHPG+VG++A+RL + FG+P+ I+ + + GSGRS+ GF + Sbjct: 363 ---DPAIVVGSPEWHPGVVGIVASRLVDYFGKPALVIAMQPNEAVSTGSGRSVTGFALHT 419 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + + IL GGHA AAGL V L D F + + P +D + Sbjct: 420 ALVAC--DDILEGHGGHAAAAGLKVRPDRIPALRDRFNAYVRSHYPGGAPAQTLTLDAEV 477 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN----LAHLQMTFESQDSE 539 SA+ LI+ L+ PYGAGNP P F K+++ R++ H+ D Sbjct: 478 PLSALTFGLINDLDKLEPYGAGNPRPKFLAAGLKVEAARLIGTGEIQRHMDFRVRQGD-T 536 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T++ +A+ + E LM + G + +N W+GS++ +L+V+D P Sbjct: 537 TIRCVAWGMADRM--EELMSAGGDCC-LAFTPKINEWKGSRKLELQVIDLKP 585 >gi|218767952|ref|YP_002342464.1| putative single-stranded-DNA-specific exonuclease [Neisseria meningitidis Z2491] gi|121051960|emb|CAM08268.1| putative single-stranded-DNA-specific exonuclease [Neisseria meningitidis Z2491] gi|319410201|emb|CBY90539.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis WUE 2594] Length = 566 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q +V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|91784237|ref|YP_559443.1| RecJ exonuclease [Burkholderia xenovorans LB400] gi|91688191|gb|ABE31391.1| exonuclease RecJ [Burkholderia xenovorans LB400] Length = 568 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 184/572 (32%), Positives = 269/572 (47%), Gaps = 32/572 (5%) Query: 32 AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 I +H + ++AR+ R V D + + L+P P+ L C+ AA + AI Sbjct: 15 EILTRHGLHPVLARLYAARGVCMPDEIET----GLARLVP-PVALKGCEDAAALLADAIQ 69 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFIN 147 + ++++ DYD DGA + A+ +R L +P+R GYG P ++ + Sbjct: 70 SQRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEIVALAARNAA 129 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 L+ITVD G S D +Q A GIDV+V DHH E PA A+VNPN+ Sbjct: 130 GKPDLLITVDNGIASVDGVQAANALGIDVLVTDHHLPGDELPPARAIVNPNQPGCTFPSK 189 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 + GV+F VL+ + LR+ L LLDLVAL TV DVV L G NR V Sbjct: 190 CIAGVGVMFYVLLALRAELRRRGAFNDNFPEPRLDGLLDLVALGTVADVVKLDGNNRVLV 249 Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLI 322 +GL R+ A + R +A +LG+ +GP +NA GR+ + +LG L Sbjct: 250 AQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSDMSLGIECLT 309 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 +DD LA +LD +N+ RR +E+ M +QA + D + I + WH G+ Sbjct: 310 TDDIGRAWDLAQQLDAMNRERREIEAGMQQQALEDLSA--IDPDGTTTITLFNPDWHQGV 367 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 +G++A RLKEKF RPSF + +D GSGRSI GF + + E G++VK G Sbjct: 368 IGIVAGRLKEKFHRPSFTFALADDSGRTVKGSGRSIAGFHLRDALDLISKREPGLIVKFG 427 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLT+ + R F+ + + + DG L + ++ML+ Sbjct: 428 GHAMAAGLTLAAADVPRFTAAFEAVGREWLSEEALSRTVETDGELEDAYFTPQFVEMLD- 486 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 A +G G P PVF+ + S +V HL++ + + AI F T Sbjct: 487 AAVWGQGFPAPVFSGE-FDIVSQALVKDKHLKLQLV-RGRQRFNAIWFNHTDT------- 537 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 538 --LPARTTVAYRLASDTWNGVSRVQLIVEHAA 567 >gi|172061071|ref|YP_001808723.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria MC40-6] gi|171993588|gb|ACB64507.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria MC40-6] Length = 565 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 181/581 (31%), Positives = 274/581 (47%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--IDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT+ + R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + L + W G R QL V A+ Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 564 >gi|308389016|gb|ADO31336.1| putative single-stranded-DNA-specific exonuclease [Neisseria meningitidis alpha710] gi|325129988|gb|EGC52783.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis OX99.30304] gi|325135943|gb|EGC58553.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M0579] gi|325202370|gb|ADY97824.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M01-240149] gi|325207878|gb|ADZ03330.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis NZ-05/33] Length = 566 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTSFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|21242609|ref|NP_642191.1| single-stranded-DNA-specific exonuclease [Xanthomonas axonopodis pv. citri str. 306] gi|21108071|gb|AAM36727.1| single-stranded-DNA-specific exonuclease [Xanthomonas axonopodis pv. citri str. 306] Length = 578 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 174/564 (30%), Positives = 272/564 (48%), Gaps = 24/564 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAGLQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + ++LR DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 200 LALRQVLRARGAFAQRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFQAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V PV Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPV 575 >gi|115352204|ref|YP_774043.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ambifaria AMMD] gi|115282192|gb|ABI87709.1| exonuclease RecJ [Burkholderia ambifaria AMMD] Length = 565 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 181/581 (31%), Positives = 274/581 (47%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R + PG+ AL + + +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT+ + R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + L + W G R QL V A+ Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 564 >gi|302342942|ref|YP_003807471.1| single-stranded-DNA-specific exonuclease RecJ [Desulfarculus baarsii DSM 2075] gi|301639555|gb|ADK84877.1| single-stranded-DNA-specific exonuclease RecJ [Desulfarculus baarsii DSM 2075] Length = 573 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 172/579 (29%), Positives = 266/579 (45%), Gaps = 18/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLI 74 +W + + A + ++ +P + ++L NR V A+DFL P + L P P Sbjct: 8 KKWRVR--NQSPSEAARLARELGLPPLAGQLLCNRGLVDAASARDFLRPRLADL-PGPDG 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 KAA + +A+ + I + GDYD DG + AL++ FL C +P R+ +G Sbjct: 65 FQGMGKAASLVAEAVQAGQVIGVAGDYDADGVTATALLVDFLRQCGGKVVWDLPHRLSEG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG P ++ GA+L+ITVDCG + D + A G+ VIV DHHQ+ Sbjct: 125 YGFLPPRAQRLAQAGARLVITVDCGVSDIDGVGAAKELGLTVIVTDHHQLPPGVAAPADA 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCD 252 + + D + HL GV F + LR +L LDLVA+ T D Sbjct: 185 MVNPQQDACALAKHLAGVGVAFYLAAACRAELRARGWFATRPAPNLRQSLDLVAVGTCAD 244 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 VVPL+G NR V +GL+V + G GL+AL + P+ A++L + + P INA GRI Sbjct: 245 VVPLVGHNRILVREGLLVLNQGGRRGLRALADASGARGPLDAKDLAFALAPRINAAGRID 304 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 LL+ D + A LD LNQ RR +E ML QA V ++ Q+A ++V Sbjct: 305 HPAQALELLLCQDEPQAAQRARLLDQLNQQRRAIEQEMLGQALEDVASEPRH-QRARLLV 363 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A+R+ E G+P+ + E+G +GSGRS+EGF + + + Sbjct: 364 LGRAGWHRGVLGIVASRVVEATGKPALLFA-IENGTAVGSGRSVEGFHLQRA--LVGVKH 420 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGHA AAG+T N L + A +P +++ + S + L Sbjct: 421 LLQHFGGHAQAAGMTTATANLPELWRQLDQAAQAALPPGEGAASLELETAAHVSQLGPGL 480 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 +D L P+G NP P+ + S V HL++ + L A Sbjct: 481 VDFLADLAPHGQANPEPLLLVEGATVLSASSVGRGHLRLLL-GGAAAPLPAFWLGHGE-- 537 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 L G + + V+ + G +L + D P Sbjct: 538 ----LAADIGGPLSLACQPRVSTYGGRH-LELFIHDLRP 571 >gi|148358991|ref|YP_001250198.1| single stranded DNA specific exonuclease RecJ [Legionella pneumophila str. Corby] gi|148280764|gb|ABQ54852.1| single stranded DNA specific exonuclease RecJ [Legionella pneumophila str. Corby] Length = 516 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 168/519 (32%), Positives = 253/519 (48%), Gaps = 19/519 (3%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN 147 + + ++I+I GD+D DGA S AL + L +P+R GYG P+++E Sbjct: 1 MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASK 60 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 LIITVD G S++ + A GIDV++ DHH A A+VNPN+ L Sbjct: 61 WQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSK 120 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + GV+F V++ + R L N ++ S LDLVAL TV DVV L NR Sbjct: 121 SIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIM 180 Query: 264 VVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +G+M R+ Q G+KALIE S + +LG+ I P +NA GR+ + +LG L Sbjct: 181 VNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL 240 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV----IVVEGDR 377 I+ D + +LD LN RR +ES M EQA + + ++ + + Sbjct: 241 ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKT 300 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILV 435 WH G++G+LA R+KEK+ RP A + + + GS RS+ +I +++ G+++ Sbjct: 301 WHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLIL 360 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGHAMAAGL++ F + DG L + +N+ + Sbjct: 361 KFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELNLETAQL 420 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF-ESQDSETLQAIAFRVYGTPLG 554 ++ AGP+G PVF ++ R+V HL+MT SQ E L AIAF V Sbjct: 421 IQQAGPWGQAFAEPVFD-NVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWP 479 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 R K +H L +N+++G R QL + +PV+ Sbjct: 480 ----NHRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQ 514 >gi|325662332|ref|ZP_08150941.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 4_1_37FAA] gi|325471334|gb|EGC74557.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 4_1_37FAA] Length = 571 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 170/574 (29%), Positives = 290/574 (50%), Gaps = 28/574 (4%) Query: 30 ALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 I QK I I+AR++ NR ++ + + +LN +I L D +++ D D+A + + Sbjct: 13 FQEIAQKFHISPILARLIRNREITDEEEIRLYLNGTIAELH-DGILMKDMDRAVEILSEK 71 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I + I + GDYD+DG + +++ + + IPDR+ DGYG N L+ + + Sbjct: 72 IREKKPIRVIGDYDIDGVNATYILLEGIEKLGGVVDSDIPDRMKDGYGLNQELINRALEA 131 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE---------IPAYALVNPNR 199 G IIT D G + + + YA G+ +IV DHH++ EE PA A+V+P R Sbjct: 132 GIDTIITCDNGIAAAEEIAYAKKMGMTIIVTDHHEIPYEEKNGEKVYELPPADAVVDPKR 191 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 +D LC A V + ++ ++ ++ QD D+ L++ VA+ATV DV+ L+G Sbjct: 192 IDCEYPFSSLCGAAVAYKLVETLFNVMGQD-----VEDVDYLMENVAIATVGDVMDLVGE 246 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGS 318 NR +V +GL + + N GL ALIE + ++A ++G++IGP +NAGGR+ + Sbjct: 247 NRIFVKQGLEMLKCTKNYGLDALIECTGVDRAHLSAYHIGFVIGPCLNAGGRLDTAKRAL 306 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 LL + +E ++LA L LN +R+ M A +E+A V + +Q+ V+V+ Sbjct: 307 ELLRASSRREADLLAGDLKALNDSRKEMTQAGVEEAVKMV--ETTALQEDKVLVIFLPDC 364 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H + G++A R++E++ +P F ++ E G GSGRSIE +D+ + +S + + K G Sbjct: 365 HESLAGIIAGRIRERYHKPVFILTKAEQG-AKGSGRSIENYDMYEEMSKC--KALFTKFG 421 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH MAAGL++ N + ++ ID + V L++ LE Sbjct: 422 GHKMAAGLSLPEENIEVFRRQLNE--KTVLTEEDFCEKVSIDMQMPLRYVTEELVEELEL 479 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G GN PVF + + + R++ L+M + + AI F L + Sbjct: 480 LEPFGKGNTKPVFVEKDMLVLNSRILGKNQNVLKMQVKDLGGTVMDAIYFGEAQECLEKI 539 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G ++ T + VN +RG K Q+ + + Sbjct: 540 --RRAGGKITATYYPSVNEFRGQKTLQIVIQNYR 571 >gi|326318411|ref|YP_004236083.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375247|gb|ADX47516.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax avenae subsp. avenae ATCC 19860] Length = 571 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 177/578 (30%), Positives = 269/578 (46%), Gaps = 30/578 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 RA+ ++ + ++AR+ R V+ A D L+ ++ L+P P L +AA + Sbjct: 9 PPRAVWALEQAGVHPLLARLYAARGVT---AHDELDDALARLLPPP-GLRGTREAAALLA 64 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145 +AI +I++ DYD DGA + A+ +R L + +PDRI DGYG +P++ + Sbjct: 65 EAIAQDRRIVVVADYDCDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRV 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 GA L++TVD G S + + A G+ V+V DHH E PA A+VNPN+ Sbjct: 125 HERGADLLVTVDNGIASVEGVAEARALGLSVLVTDHHLPGPELPPADAIVNPNQPGCTFE 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + GV+F VL+ + LR+ L LL LVAL TV DVV L NR Sbjct: 185 SKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDANNRRL 244 Query: 264 VVKGLMVARRQGNPGLK-ALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R P AL + + + T + G+ +GP INA GR+ + LG L Sbjct: 245 VAQGLKRIRAGHMPAGIAALFDAAGRKASVATTFDFGFALGPRINAAGRLADMTLGIECL 304 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380 ++DD LA LD +N+ RR +E M EQA + + + + + V +H Sbjct: 305 LTDDPGRAAELARTLDAINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHE 364 Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434 G+VG++A+R+K++ RP+F + ++ + GSGRSI GF + + G++ Sbjct: 365 GVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGSGRSIPGFHLRDALDLVAKRHPGVI 424 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGHAMAAG TV + F F + A + A DG L+ L+D Sbjct: 425 LKFGGHAMAAGCTVAKDQFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRAELVD 484 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGTP 552 L +G G P F ++ S R+V HL + Q + I F Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVEIVSQRLVGEGKNHLSLKLLHQ-GRPVDGIWFGHTE-- 539 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R+ + L VN W+G +R Q V A Sbjct: 540 -------PLPARVLLAFRLDVNEWKGERRVQFLVEGAQ 570 >gi|253733113|ref|ZP_04867278.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus TCH130] gi|253728869|gb|EES97598.1| recombination protein RecJ [Staphylococcus aureus subsp. aureus TCH130] Length = 756 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 158/588 (26%), Positives = 284/588 (48%), Gaps = 29/588 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDINHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D K RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + + + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL++D+ +E LA +++ N+ R+ + + + E+A A T+ +++ Sbjct: 292 LACELLMTDE-EEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAK 348 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ Sbjct: 349 ENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELI 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH MAAG+T++ N L + K+ + PV ++D +L + + I I Sbjct: 407 AKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIR 466 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G P+F + + S++ + HL++T + L F G Sbjct: 467 DMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHL 522 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 523 EPELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 567 >gi|325925179|ref|ZP_08186592.1| exonuclease RecJ [Xanthomonas perforans 91-118] gi|325544433|gb|EGD15803.1| exonuclease RecJ [Xanthomonas perforans 91-118] Length = 579 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGMSPALVDELAALQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEMLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + +LR+ DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 200 LALRSVLRKRGAFAGRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPMAACLFDADWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAVLATFEQAFLAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDGQ-FEVLQHRVLKDRHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V PV Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPVT 576 >gi|317470622|ref|ZP_07930008.1| single-stranded-DNA-specific exonuclease RecJ [Anaerostipes sp. 3_2_56FAA] gi|316901913|gb|EFV23841.1| single-stranded-DNA-specific exonuclease RecJ [Anaerostipes sp. 3_2_56FAA] Length = 574 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 161/585 (27%), Positives = 279/585 (47%), Gaps = 30/585 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 +W + R I + I ++AR++ NR+++ + + +L+ ++ + DP ++ Sbjct: 3 KWFISKKKADFVR---IGETFGIDPVIARLIRNRDITGEEDIRRYLSGTLSDI-SDPFMM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D ++A R + QA+ KI I DYDVDG S ++ + LS + IPDRI DGY Sbjct: 59 KDAEEACRLLRQAVRRGTKIRIISDYDVDGVISNYILWKSLSDLGGTVDFVIPDRIQDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N + EG L+IT D G ++D ++ A + G++VIV DHH+V Sbjct: 119 GMNSEMAVNAKKEGIGLMITCDNGIAAFDPVKKAKDLGMEVIVTDHHEVPYQMEEGRKRE 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+VNP + LC AGV F ++ +YR +++ +L LL +A Sbjct: 179 MLPPADAVVNPKQETCAYPYKQLCGAGVAFQLMRALYRAEGRED-----KELEPLLCFLA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 +ATVCDVV L NR +V +GL N GL+AL+ N + + + +LG++IGP I Sbjct: 234 IATVCDVVDLTEENRIFVREGLNRIGLTQNTGLRALLRVHNLEETTVNSYHLGFVIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + RL + D E A +L LN R+ M + +++A ++ Sbjct: 294 NASGRLESAEKVLRLFLEKDMAAAEETAQELKDLNDQRKGMTNEGVKEALDQIEQNGYG- 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+V+ H I G++A R+K+K RP F ++ ++G GSGRSIE + + + + Sbjct: 353 -KDKVLVIYLPDCHESIAGIIAGRVKDKVHRPVFVLTKGKEGI-KGSGRSIENYHMFEAM 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + + + GGHAMAAG ++ + + ID + Sbjct: 411 NEV--KDVFARFGGHAMAAGCSLSDESKVEEFRRRINGYCE-LKENDFIKKVSIDVDMPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 ++ L+ + P+G N P+FA ++ I+V ++++ S + Sbjct: 468 DYISAELVRQMAVLEPFGKENKRPLFAHRKLFIERIQVFGDNRNVIRLSLLSDRGTRMTG 527 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 + F + M + + T + +N +RG++ Q+R+ Sbjct: 528 MIF--EEEDIFREKMGEGKQYITCTYYPDINVYRGNESLQIRIQH 570 >gi|294666708|ref|ZP_06731944.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603533|gb|EFF46948.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 579 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLRNSGVAAELLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + ++LR DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 200 LALRKVLRARGAFAQRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWGQAREIAGA 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFQAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V P Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPAT 576 >gi|153810177|ref|ZP_01962845.1| hypothetical protein RUMOBE_00558 [Ruminococcus obeum ATCC 29174] gi|149833356|gb|EDM88437.1| hypothetical protein RUMOBE_00558 [Ruminococcus obeum ATCC 29174] Length = 570 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 165/584 (28%), Positives = 286/584 (48%), Gaps = 32/584 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W+ + I + I ++AR++ NR++ + + +L ++ + P P + Sbjct: 3 KWMVYNKKADFQ---KIGSEFGIDPVIARLIRNRDIQDMKEIRSYLYGTLAEI-PSPWKM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D ++A + + + I +KI I GDYD+DG + ++++ L + N + YIPDR+ DGY Sbjct: 59 KDMERAVQILQKKITQKKKIRIIGDYDIDGVTATCILLKGLKRLNANVDTYIPDRVKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + L++K + +G I+T D G + ++YA +G+ VIV DHH + + Sbjct: 119 GMHEQLIDKALEDGIDTILTCDNGIAAAAEIEYAKKEGLTVIVTDHHDIPFRDTEDGRIW 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+VNP + D L ++C A V + ++ +Y L D + ++ L+L A Sbjct: 179 IIPKADAVVNPKQNDCLYPNKNICGAVVAWKLIWALYERLGID-----SDEIWDFLELAA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ L G NR V +GL GLKALI N+ + ITA ++G++IGP I Sbjct: 234 IATVGDVMDLQGENRIIVKEGLKKLSSTSFEGLKALICVNNLEGAEITAYHVGFVIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL++D+ ++ LA L LNQ+R+ M QA + + +++ Sbjct: 294 NASGRLDTAARSLELLLADNMEDAMKLADDLYDLNQSRKAMTEQGKGQAIQSI--EENNL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+VV H + G++A R++E + +P F ++ DG GSGRSIE + + Sbjct: 352 GKDRVLVVYLPDCHESLAGIIAGRIREAYNKPVFVLTKGSDGV-KGSGRSIEAYSMY--E 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 +L++ GGH MAAGL++E N + P ID + Sbjct: 409 ELVKCSDLLMQFGGHPMAAGLSMEEKNVELFRRRLNDNC--TLTEQDLIPKIMIDVPMPI 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL--QMTFESQDSETLQA 543 S ++ L + L+ P+G GN P+FA N + IRV +M + + A Sbjct: 467 SYLSKKLTEQLKVLEPFGKGNSKPLFAQKNLRAVGIRVFGRNRNVAKMLLIDGNGIKMDA 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F +F+ + VT + +N ++G + Q+ + Sbjct: 527 VYFGEA-QEFVDFVQAH--DTISVTYYPEINVFQGRENLQVVIK 567 >gi|320162234|ref|YP_004175459.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila UNI-1] gi|319996088|dbj|BAJ64859.1| single-stranded-DNA-specific exonuclease [Anaerolinea thermophila UNI-1] Length = 767 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 164/589 (27%), Positives = 283/589 (48%), Gaps = 26/589 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 F+W+ L +T + +AR+L +R ++ A+ FLNP+ P P Sbjct: 2 FQWIEPRENGIPAALLEVTGGQGL---IARILAHRGITDPQRARAFLNPAFYQPAP-PED 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + A +RI +AI E+I ++GD+DVDG + AL+++ L ++P R +G Sbjct: 58 LPGMEIACQRISRAIQRGERIWVWGDFDVDGQTATALLVQTLRWLGAEPRYHVPVRETEG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +G N +EK + +GA L+IT D G T+++AL+YA + ++VIV DHH + PA Sbjct: 118 HGVNIPYLEKILEQGADLMITCDTGITAFEALEYARERSLEVIVTDHHLLGERLPPALTH 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 + P L + L GV + + + + Q + LLDLVAL V DV Sbjct: 178 LTPRLLPENHPMCGLPGVGVAYQLALALLTRAGQPERAQ------ELLDLVALGIVADVA 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLK-ALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 IG R + +GL RR G++ L + E+LG+++ P +NA GR+G+ Sbjct: 232 LQIGDTRYLLQQGLQELRRGKRLGVRAVLERAEVSRLWLNEEHLGFVLAPRLNALGRLGD 291 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +N LL + D +LA +L++LN R+ + + +L AE ++ T + +A V+++ Sbjct: 292 ANPAVELLTTTDEARARVLAEELEILNMRRQFLTAQVLAAAEDRLRTDS-SLLRAPVLIL 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 E +W PG++G+ A+ L +++ RP +S G GS RSIEG DI ++ + + Sbjct: 351 ENSQWAPGVIGIAASHLAQRYHRPVILMSASSSGILRGSARSIEGVDITAAITAC--KDL 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL--ITTPVFKIDGVLNASAVNIA 491 L+ GGH MAAGL + + V AL + +++ VL +++ Sbjct: 409 LIGFGGHPMAAGLALMAEQLPAFRACLTRQVQAQVDALGGLPERTLQLEAVLRLEEIHLK 468 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549 + + LE P+G GNP P P+ ++ ++ + HL++T E + + + Sbjct: 469 VAEALEQLAPFGPGNPTPALMVPDVRISNVIAIGRNDDHLRITVEDRMGNERGVLWWNGA 528 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 L E + L + ++G++ Q+ LD P + Sbjct: 529 NADLPEGW-------FDLACTLRASTYQGTRDVQVEWLDWRPRQVEQID 570 >gi|167563345|ref|ZP_02356261.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia oklahomensis EO147] gi|167570517|ref|ZP_02363391.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia oklahomensis C6786] Length = 564 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 177/564 (31%), Positives = 268/564 (47%), Gaps = 27/564 (4%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 +H + ++AR+ R ++ + ++ L+P P L C AA + A+ K+ Sbjct: 19 RHGLHPVLARLYAARGITSPAD---IETALSRLVP-PAQLKGCANAAALLADALEAGRKM 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 ++ DYD DGA + A+ +R L + +P+R GYG P ++E L+IT Sbjct: 75 LVVADYDCDGATACAVAVRGLRMFGATIDYLVPNRFEYGYGLTPEIVELAAARKPDLLIT 134 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G S D + A +GIDV+V DHH A A+VNPN+ H+ GV+ Sbjct: 135 VDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFPSKHIAGVGVM 194 Query: 216 FLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 F VL+ + LR L LLDLVAL TV DVV L G NR V +GL R Sbjct: 195 FYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGLQRIR 254 Query: 273 RQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 A + R +A +LG+ +GP +NA GR+ + +LG L +DD Sbjct: 255 NGRMQPGIAALFRAAAREARSASGFDLGFGLGPRLNAAGRLSDMSLGIECLTTDDIGRAW 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD +N+ RR +E+ M +QA A + + D +A+ I + WH G++G++A RL Sbjct: 315 ELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQGVIGIVAGRL 372 Query: 391 KEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 KE+F RP+F + +D GSGRSI GF + + E ++V GGHAMAAG+ Sbjct: 373 KERFHRPAFTFAHADDSGARVKGSGRSIPGFHLRDAIDLISKREPDLIVTFGGHAMAAGV 432 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ N R F+ A + V + DG L + ++++L+S +G G Sbjct: 433 TLDTENVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYFTPQVVELLDS-AVWGQGF 491 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P P+F+ + S +V HL++ + + AI F R Sbjct: 492 PAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHAE---------PLPARAT 540 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 V L + W G R QL V A+ Sbjct: 541 VAFRLASDTWNGMTRVQLIVEHAA 564 >gi|15676738|ref|NP_273883.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis MC58] gi|7226077|gb|AAF41253.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis MC58] gi|316984247|gb|EFV63223.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis H44/76] gi|325140010|gb|EGC62539.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis CU385] gi|325200478|gb|ADY95933.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis H44/76] Length = 566 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 263/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++A++ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIAQLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q +V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|220904677|ref|YP_002479989.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868976|gb|ACL49311.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 578 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 170/587 (28%), Positives = 274/587 (46%), Gaps = 21/587 (3%) Query: 16 FRWVSLLGQEGINRAL--AITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 W+ G L + ++ +I ++ VL R S A FL+ + L P P Sbjct: 2 KNWLFRTPPAGGPVCLPASWAEELSISPLLLEVLWRRGFSHKQAINAFLDARLDSLTP-P 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +AA+ + + +K+ ++GDYDVDG + L++ L + A +IPDR Sbjct: 61 HRWPQMPEAAQLLADELLAGKKLAVWGDYDVDGITASTLVLDVLESHGIEALWHIPDRRT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N ++ +G ++++TVDCG DA+ +A G+ V+V DHH + + PA+ Sbjct: 121 EGYGLNVKQIDALAAQGCRILLTVDCGIADVDAVNHARRIGMTVVVSDHHLPQDDLPPAH 180 Query: 193 ALVNPNRLDDLS-GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 AL NP + S HL GV F ++ + L + LDLVAL T+ Sbjct: 181 ALCNPRMCPEESLPCPHLAGVGVAFYLMGAVNAAL--APHTGKKHRMDKCLDLVALGTLA 238 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGG 309 D++PL NR V GL PG+ AL + + +T+ + + + P INA G Sbjct: 239 DIMPLTSENRILVRGGLGHLADASRPGIAALKVASGMDAKTRLTSGQVSFQLVPRINAAG 298 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 RIG+ L RLL D LA +LD LN R+ E+ + +A A+VL + + Sbjct: 299 RIGDGGLALRLLRQKDFSSALPLAQQLDQLNTERKQAENTIHSEARAQVLDML-SREPRA 357 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +V+ G WHPGIVG++A+R+ E+F RP+ + ++ G GSGRS+ FD+ Sbjct: 358 SLVLYGQDWHPGIVGIVASRIVEEFYRPTIIL-CQDQGSLKGSGRSVREFDLH--AGLCQ 414 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV- 488 L GGH +AAG+ + N R F+ F + +P ++ L+ + Sbjct: 415 TASSLSGFGGHRLAAGVRLPLENLARFRTEFENFVAQQLGTNPLSPSLTLECQLDFAQAS 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFES-QDSETLQAIA 545 N + + LE P+G GN PVFA P ++ + H+++ + Q L A A Sbjct: 475 NQSFLKELEMLQPFGPGNAEPVFASPPLLVKERSPLGRGGEHVRLRLQDEQSGLILTAKA 534 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +R+ T + GKR+ V ++ + G + + D P Sbjct: 535 WRMAQTLTASMI----GKRIRVAYTPRLDTYNGITSVDVGIKDWQPA 577 >gi|261379846|ref|ZP_05984419.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria subflava NJ9703] gi|284797540|gb|EFC52887.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria subflava NJ9703] Length = 566 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ R+V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GTDPLIARLCAARDV---QSPAELDDKLAALLPY-QTLTNCEAAADRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L++TVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR N +L LDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRHRNYFSDGLKEPNLGDFLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPLGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRYPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAK-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|261392806|emb|CAX50387.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis 8013] Length = 566 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q + V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQT--TLAVYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVREDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|167581340|ref|ZP_02374214.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia thailandensis TXDOH] Length = 564 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 177/582 (30%), Positives = 271/582 (46%), Gaps = 30/582 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + A+ +H + ++AR+ R + S + ++ L+P P L Sbjct: 3 RIVTRPAVPAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + A+ K+++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAAALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S D + A +GIDV+V DHH A A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR L LLDLVAL TV DVV Sbjct: 177 NQPGCTFPSKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312 L G NR V +GL R A + R +A +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG L +DD LA +LD +N+ RR +E+ M +QA A + + D +A+ I Sbjct: 297 DMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKE+F RP+F + + GSGRSI GF + + Sbjct: 355 LFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E ++V GGHAMAAG+T++ N R F+ A + V + DG L + Sbjct: 415 REPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 ++++L+ A +G G P P+F+ + S +V HL++ + + AI F Sbjct: 475 TPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNH 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + L + W G+ R QL V A+ Sbjct: 532 AE---------PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564 >gi|160945517|ref|ZP_02092743.1| hypothetical protein FAEPRAM212_03046 [Faecalibacterium prausnitzii M21/2] gi|158443248|gb|EDP20253.1| hypothetical protein FAEPRAM212_03046 [Faecalibacterium prausnitzii M21/2] Length = 710 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 189/575 (32%), Positives = 290/575 (50%), Gaps = 27/575 (4%) Query: 23 GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKA 81 E LA QK ++A +L R ++ A L + DP +LTD D A Sbjct: 42 SDEKYKAVLAAQQKEN--ALLAGILAARGITDPAEALTLLAG--EEELSDPALLTDMDAA 97 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 +RI QAI N E I +FGDYDVDG + AL+ + L + +P R DGYG + + Sbjct: 98 CQRIWQAIDNGETIAVFGDYDVDGVTATALLYQHLKGMGASVKCMLPSREGDGYGLSKNA 157 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ N+G LI+TVD G ++ + +A + G+D+I+ DHH A A+V+P R D Sbjct: 158 IQSMHNKGCTLIVTVDNGISAVEEADFAASLGMDLIITDHHLPPETLPKAVAVVDPRRED 217 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 D S LC AGV F + + + P L DL A+ TV DV+PL+G NR Sbjct: 218 DHSPFKGLCGAGVAFKLCAAL-------DGCPPEEMLDYCGDLAAVGTVADVMPLVGENR 270 Query: 262 AYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V GL ++ PG AL+E V PITAEN+ Y I P INA GR+ + +L Sbjct: 271 TLVKAGLRQLQQTDRPGFGALLEEVGLAGKPITAENISYAIAPRINAAGRMDNAVTALQL 330 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 ++ +D E LA KL+ +N +R+ E + + AE + Q + + ++++ G WHP Sbjct: 331 VLCEDPDRAEELAHKLNEINAHRQETEQQIFKAAEELLEQQPERLDDR-IMLLWGRDWHP 389 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++G++A+RL E+ GRP ++ +E G+G GSGRS++GF++ + +LV+ GGH Sbjct: 390 GVIGIVASRLVERTGRPVIVVTIDEHGEGKGSGRSVQGFNLHACIGSC--ADLLVRYGGH 447 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 AMAAGL+V N L ++A P L TP D ++ + + + L+ Sbjct: 448 AMAAGLSVREENLPELRRRLNEWAARECPVLH-TPPLTCDVTIHLDRITVESVRHLDQLA 506 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 PYGA NP PVF + + + V+ H ++ +S A+ F + L L Sbjct: 507 PYGAENPTPVFLLQSAVVDGVYPVSEGRHSRLRLRQGNSCLY-AVWFGMPAEQLPYAL-- 563 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQL--RVLDASPV 592 G + +L V + ++ QL R++D P Sbjct: 564 --GDVVDAALNLSV--YESARGAQLSGRIIDLHPA 594 >gi|313902370|ref|ZP_07835773.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter subterraneus DSM 13965] gi|313467301|gb|EFR62812.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter subterraneus DSM 13965] Length = 788 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 188/585 (32%), Positives = 277/585 (47%), Gaps = 30/585 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 G RW + LA + + ARVL R + A+ L+ L+ DP Sbjct: 7 GRRWQVRPADPAAAQRLARAL--GVTPLTARVLAARGWTDVAAARRLLDGH--PLLHDPF 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRI 131 +LT + A RI A+ E I+I GDYDVDG A+ AL+ R L +YIPDR Sbjct: 63 LLTGMEAAVARIRTALARDEGILIVGDYDVDGVAAAALLYRGLQDFEPGARVQVYIPDRH 122 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG P +E GA L+ITVD G ++ L A +G+DVIV DHHQ + E PA Sbjct: 123 GEGYGVPPGALEAAQAMGATLLITVDNGIAAHGPLGEAARRGLDVIVTDHHQPQGELPPA 182 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP+R D LC GVVF +L + L + P+ + L ALATV Sbjct: 183 LAVINPHRPDSRYPWRGLCGTGVVFKLLQAL---LGDEPASPVWWQL------AALATVA 233 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGR 310 DVVPL NR V +GL PGL AL E + + A + +++ P +NA GR Sbjct: 234 DVVPLQDENRTLVQRGLAELAAAPLPGLAALAEVAGLGDTRLDAHGVAFILAPRLNAAGR 293 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G + LL +D + LA+ +D LN+ RR E L QA ++ + + + V Sbjct: 294 MGSAYQAWELLATDQRERARALALAVDQLNRLRRQQEDLALGQALQRL-ERGEGLYGDEV 352 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I + WH G++G++A+RL + F RP+ ++ GSGRSI GF + + ++ Sbjct: 353 IALAHPGWHQGVLGIVASRLVDLFHRPALV-GRQQAEWITGSGRSIAGFHLFRALASC-- 409 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+ + GGHA AAG T+ + L + A + PV ++D V + + Sbjct: 410 AGLFARFGGHAQAAGFTLPAARWRELGERLAAEARRSLTPAQRVPVVEVDAVARPEELTV 469 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVY 549 + LE P+G GNP PV A + R V HL++ + A+AF + Sbjct: 470 EAVRQLERLAPFGEGNPEPVIALADLPPAVARAVGGGEHLRLEWPGG----WSAVAFGLG 525 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 ++ ++ V V+ +RG+ R LRV D P E Sbjct: 526 EL----ARQLAQVPQVEVAVRPRVDAYRGNLRVDLRVQDLRPAEP 566 >gi|257066402|ref|YP_003152658.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus prevotii DSM 20548] gi|256798282|gb|ACV28937.1| single-stranded-DNA-specific exonuclease RecJ [Anaerococcus prevotii DSM 20548] Length = 576 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 176/589 (29%), Positives = 282/589 (47%), Gaps = 30/589 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W +E L + I + A +L NR++ F+NPS+ L DP +L Sbjct: 3 NWYIYNKKENYINNL---KNKDITKLEALILANRDIVDPFVVDMFINPSLDKLH-DPFML 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA I++ I N+ +I IFGDYD DG ASV ++ L N + IP R+ DGY Sbjct: 59 KDVDKAIDLIIETIQNNGEIRIFGDYDQDGIASVMTLLDGLLFYYDNISYDIPHRVEDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + ++ EK I + L+IT D G T +D ++ I+VIV DHHQ++ E+ Sbjct: 119 GISNNMSEKAIADKVSLVITCDNGITGFDQVKKLKENNINVIVTDHHQIEKEDNDGWVNQ 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ++NP+RLD LC AGV F ++ +Y L D L SLL+ VA Sbjct: 179 ILPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQALYMKLEGD-----FEYLFSLLEYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCD+V L NR +V++GL +KAL+E I LG+++GP +N Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRLNATEKYAIKALLEEAGWRKEINEYTLGFILGPLMN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L LL+ +D ++ A +L LN R+ + + + + D Sbjct: 294 ATGRLSTAKLAIELLMEEDIDKIHEYANELVNLNNKRKSLTEEGINKCIKIAEDKSYD-- 351 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMV 425 + VIV+ I G++A R+KEK+ RP+ ++ +G GSGRSIE +++ + Sbjct: 352 KDDVIVIYEPSIDESICGIVAGRIKEKYYRPTIILTNSSKEGVLKGSGRSIETYNMHDAI 411 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + L GGH MA GL+++ F K ++ + V ID + Sbjct: 412 --VPFDHKLESFGGHPMACGLSIKVDILDEFRIFLNK--NSNLSKKDLEEVINIDTQIKL 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAI 544 S +++ + LES P+G NP P+FA + I ++ M + Q+ AI Sbjct: 468 SNLSLEFAESLESLSPFGKDNPRPIFANKGVDIADIAMIGKDKKTMRMKLFQNGNYYNAI 527 Query: 545 AFRVYGTPLG---EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F +F + +G ++ + + VN +RG++ Q++++D Sbjct: 528 KFNALDDYEYLSLKFDGKIKGNKIDIVYYPDVNEFRGNRTLQIKLIDIR 576 >gi|15644294|ref|NP_229346.1| single stranded DNA-specific exonuclease, putative [Thermotoga maritima MSB8] gi|4982113|gb|AAD36613.1|AE001800_23 single stranded DNA-specific exonuclease, putative [Thermotoga maritima MSB8] Length = 955 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 159/580 (27%), Positives = 271/580 (46%), Gaps = 26/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W Q I+Q + +I +R+LVNR + + + FL + DP + Sbjct: 2 KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFVNESHQH-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +KA +++A +E ++I GDYDVDG S ++ FL ++YIP RI +G Sbjct: 59 FNDMEKAVETLLEARSKNELVLIHGDYDVDGITSTVMLKEFLEENGWRVDVYIPHRIEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG P + F ++TVDCG T+ D++ A G+ VIV DHH+V + PA A+ Sbjct: 119 YGIQPENISTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIVTDHHEVNGDLPPADAI 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + L GV + ++ + L+LVAL TV D+V Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQALSEA-------TNYPHPERFLELVALGTVADMV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L+ NR +V KG+ + GLK L+ER+ + + +T+ ++ Y I P +NA GR+G + Sbjct: 232 TLLDENRYFVKKGIELLANTKRVGLKRLLERLGLRN-LTSHDISYKIAPRLNAAGRMGSA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N LLI +D + + + +L LN RR E A+ ++A + + +D+ + VIVV Sbjct: 291 NDAFNLLIMNDPAKADSVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++AA+L ++ +P +S +E GS RS G+DI + + + I Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH+ A G +++R D+ + + +D + ++ I+ Sbjct: 407 EEIGGHSSAVGFSLKRDQLEPFRDYIRN-----ISLEEREEKVIVDAEVRMEDIDDRFIE 461 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553 ++ P+G GNP PV F + ++ I + ++ + L+ + + Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLVEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPV 592 + R V +L G+ L LD PV Sbjct: 522 SLSTLPVTPTRGDVVVNLRP---MGNGVSYYLISLDVKPV 558 >gi|83721546|ref|YP_442415.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia thailandensis E264] gi|167619420|ref|ZP_02388051.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia thailandensis Bt4] gi|83655371|gb|ABC39434.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia thailandensis E264] Length = 564 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 177/582 (30%), Positives = 271/582 (46%), Gaps = 30/582 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + A+ +H + ++AR+ R + S + ++ L+P P L Sbjct: 3 RIVTRPAVPAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + A+ K+++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAAALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S D + A +GIDV+V DHH A A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR L LLDLVAL TV DVV Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312 L G NR V +GL R A + R +A +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG L +DD LA +LD +N+ RR +E+ M +QA A + + D +A+ I Sbjct: 297 DMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKE+F RP+F + + GSGRSI GF + + Sbjct: 355 LFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E ++V GGHAMAAG+T++ N R F+ A + V + DG L + Sbjct: 415 REPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 ++++L+ A +G G P P+F+ + S +V HL++ + + AI F Sbjct: 475 TPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNH 531 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R + L + W G+ R QL V A+ Sbjct: 532 AE---------PLPARATLAFRLASDTWNGTTRVQLIVEHAA 564 >gi|15605174|ref|NP_219960.1| ssDNA exonuclease [Chlamydia trachomatis D/UW-3/CX] gi|76789182|ref|YP_328268.1| hypothetical protein CTA_0488 [Chlamydia trachomatis A/HAR-13] gi|237802875|ref|YP_002888069.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis B/Jali20/OT] gi|237804797|ref|YP_002888951.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis B/TZ1A828/OT] gi|255311257|ref|ZP_05353827.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 6276] gi|255317559|ref|ZP_05358805.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 6276s] gi|3328879|gb|AAC68046.1| ssDNA Exonuclease [Chlamydia trachomatis D/UW-3/CX] gi|76167712|gb|AAX50720.1| RecJ [Chlamydia trachomatis A/HAR-13] gi|231273097|emb|CAX10010.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis B/TZ1A828/OT] gi|231274109|emb|CAX10903.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis B/Jali20/OT] gi|296435973|gb|ADH18147.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis G/9768] gi|296436900|gb|ADH19070.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis G/11222] gi|296437834|gb|ADH19995.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis G/11074] gi|297140334|gb|ADH97092.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis G/9301] gi|297748578|gb|ADI51124.1| RecJ [Chlamydia trachomatis D-EC] gi|297749458|gb|ADI52136.1| RecJ [Chlamydia trachomatis D-LC] Length = 584 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 160/582 (27%), Positives = 268/582 (46%), Gaps = 13/582 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S G +W E + I ++ + +A+VL++R SI +DFL P + L Sbjct: 7 SSLGQKWDYPKHNEVFLK--KILKEFHLHPAIAQVLISRGFQSIQEIRDFLYPQLSSLHS 64 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D +KA R++QA N+E +MI+GD DVDG V L++ FL V + Sbjct: 65 T-SLFLDMEKAVARLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +G SL+ + + +G L+ITVDCG T+ + QGIDVIV DHH + Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVHAINKQGIDVIVTDHHMPTGKLPH 183 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249 A++NP + L GV F ++ Y L +QD DLL LDLV+L T Sbjct: 184 CVAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308 + DV L G NR V G+ + GLK L + +++ NLG I P +N+ Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +S+ G +LL+S D + + + +L +NQ R+ +E+ +L E ++L + Sbjct: 304 GRLADSSQGVKLLLSHDPKNIGTIVSELSAVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S IV+ WH ++ +++ARL + +P I+ ++ G G GS R+I F + ++ Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E + GGH AAGL ++ F + + +D ++ S + Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 N LI +E P+G GN +PVF +++ +++ H+++ + L+ AF Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + + L + +L + D Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578 >gi|116074897|ref|ZP_01472158.1| RecJ exonuclease [Synechococcus sp. RS9916] gi|116068119|gb|EAU73872.1| RecJ exonuclease [Synechococcus sp. RS9916] Length = 631 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 161/547 (29%), Positives = 263/547 (48%), Gaps = 22/547 (4%) Query: 46 VLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 VL+ R ++ D AK +L PS L P A R++ A + E + I GDYD D Sbjct: 33 VLMRRGINDLDQAKQWLTPS--ALPPADQHFPGLQPAVTRLIAACQSGETLAICGDYDAD 90 Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 G S AL++R L IP R+ DGYG N ++E+ +G +L++TVD G + Sbjct: 91 GMTSTALLIRALQPLGARPVAAIPSRMDDGYGLNVRMVEELHQQGVRLLVTVDNGVAAEA 150 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 AL A + + VI+ DHH + A AL++P S L G+ +++ + Sbjct: 151 ALARAKDLDVQVIITDHHTIPDPPPQALALLHPATTPVDSPYRGLAGVGLAYVLARSLAE 210 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 L + + S DL + T+ D+ PL G NRA++ +GL R GL+AL + Sbjct: 211 ALEK------PEAISSARDLFCIGTIADMAPLTGANRAWLREGLDHLHRTRCAGLRALQQ 264 Query: 285 RVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 + A+++G+ I P INA GR+GE +L LL +D+ LA K D LN+ R Sbjct: 265 LSGLEDRALRADDVGFQIAPRINAVGRLGEPSLVVDLLTENDTDTAVELARKCDGLNRQR 324 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 R + A+ +A A V + I A +++ WH G++G++AARL E++ RP+ ++ Sbjct: 325 RELCDAIEAEAVALVESNAKSI--APFLLLAQGHWHHGVIGIVAARLMERYQRPAALLAA 382 Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 + +G S R+ EGF + + + L + GGH A G TV+ L Sbjct: 383 DGEGMMRASVRAPEGFAVDQALQAC--ADHLDRFGGHPAAGGFTVKAERVAALHAQLNGI 440 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 A + + + + V K + +L ++ +L L + P+G GNP P+F N + R+ Sbjct: 441 AEHWMESRLKGRVVKPEALLRFEQIDRSLWTSLRTLEPFGIGNPAPLFWARNCDVLEQRM 500 Query: 524 VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 + HL++ Q + L AIA+R + ++ + L +N W+G +R Q Sbjct: 501 LRGGHLKLRLR-QGATLLDAIAWRWREN-------ATIPDQIDLAFRLSMNRWQGEERLQ 552 Query: 584 LRVLDAS 590 L ++ Sbjct: 553 LEIVALR 559 >gi|291560708|emb|CBL39508.1| exonuclease RecJ [butyrate-producing bacterium SSC/2] Length = 575 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 151/585 (25%), Positives = 267/585 (45%), Gaps = 33/585 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + N+ I +K I ++AR++ NR+V + + +L + + DP ++ Sbjct: 3 QWYLYKKKADFNQ---IGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDI-SDPFLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + Q + + I I DYDVDG S ++ + + + IPDR+ DGY Sbjct: 59 KGVKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLGGKIDFQIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N +++EK + + I+T D G + DA+ Y G+ +I+ DHH V Sbjct: 119 GINENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGVRK 178 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA ++NP + LC AGV F + Y+ + +D L LL ++ Sbjct: 179 EVLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEEDES-----QLEELLSML 233 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATVCDVV L G NR +V +GL + N GLKAL+ + + I + LG+++GP Sbjct: 234 AIATVCDVVDLTGENRIFVKEGLRRIKDTQNIGLKALLNVHDLMDKQIQSYALGFIVGPC 293 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + L + +D ++ + A +L LN R+ M +++A + + Sbjct: 294 INASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE--YE 351 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V+V+ H I G++A R+K++ P+F ++ ++G GSGRSIEG+ + Sbjct: 352 AKGDKVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEGI-KGSGRSIEGYSM--F 408 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + K GGH MAAG ++E+ + + +ID + Sbjct: 409 EEMMKVKEVFTKFGGHPMAAGCSLEKEKLQEFRKKINENC--TLEKKDFAKKVQIDIDMP 466 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 + + LI L P+G N P+FA K++ + V +++ +S + Sbjct: 467 VDYITMDLIHQLSVLEPFGKENKKPLFAHRKLKVERVNVFGKNKNVIKLALKSSQGTRID 526 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F + K + T + +N ++G K Q+ + Sbjct: 527 GMIFEDEDEFREKM---GTAKYITCTYYPVINEYQGYKSLQINIQ 568 >gi|170288998|ref|YP_001739236.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga sp. RQ2] gi|170176501|gb|ACB09553.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga sp. RQ2] Length = 955 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 159/580 (27%), Positives = 271/580 (46%), Gaps = 26/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W Q I+Q + +I +R+LVNR + + + FL + DP + Sbjct: 2 KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFVNESHQH-DPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +KA +++A +E ++I GDYDVDG S ++ FL ++YIP RI +G Sbjct: 59 FNDMEKAVETLLEARSKNELVLIHGDYDVDGITSTVMLKEFLEENGWRVDVYIPHRIEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG P + F ++TVDCG T+ D++ A G+ VIV DHH+V + PA A+ Sbjct: 119 YGIQPENISTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIVTDHHEVNGDLPPADAI 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + L GV + ++ + L+LVAL TV D+V Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQALSEA-------TNYPHPERFLELVALGTVADMV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L+ NR +V KG+ + GLK L+ER+ + + +T+ ++ Y I P +NA GR+G + Sbjct: 232 TLLDENRYFVKKGIELLANTKRVGLKRLLERLGLRN-LTSHDISYKIAPRLNAAGRMGSA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N LLI +D + + + +L LN RR E A+ ++A + + +D+ + VIVV Sbjct: 291 NDAFNLLIMNDPAKADGVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++AA+L ++ +P +S +E GS RS G+DI + + + I Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH+ A G +++R D+ + + +D + ++ I+ Sbjct: 407 EEIGGHSSAVGFSLKRDQLEPFRDYIRN-----ISLEEREEKVIVDAEVRMEDIDDRFIE 461 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553 ++ P+G GNP PV F + ++ I + ++ + L+ + + Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLVEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPV 592 + R V +L G+ L LD PV Sbjct: 522 SLSTLPVTPTRGDVVVNLRP---MGNGVSYYLISLDVKPV 558 >gi|225076841|ref|ZP_03720040.1| hypothetical protein NEIFLAOT_01892 [Neisseria flavescens NRL30031/H210] gi|224951827|gb|EEG33036.1| hypothetical protein NEIFLAOT_01892 [Neisseria flavescens NRL30031/H210] Length = 566 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 167/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGMKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|166154661|ref|YP_001654779.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 434/Bu] gi|166155536|ref|YP_001653791.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335929|ref|ZP_07224173.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis L2tet1] gi|165930649|emb|CAP04146.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 434/Bu] gi|165931524|emb|CAP07100.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 584 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 269/582 (46%), Gaps = 13/582 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S G +W E + I ++ + +A+VL++R SI +DFL P + L Sbjct: 7 SSLGQKWDYPKHNEVFLK--KILKEFHLHPAIAQVLISRGFQSIQEIRDFLYPQLSSLHS 64 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D +KA R++QA N+E +MI+GD DVDG V L++ FL V + Sbjct: 65 T-SLFLDMEKAVARLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +G SL+ + + +G L+ITVDCG T+ +Q QGIDVIV DHH + Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVQAINKQGIDVIVTDHHMPTGKLPH 183 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249 A++NP + L GV F ++ Y L +QD DLL LDLV+L T Sbjct: 184 CIAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308 + DV L G NR V G+ + GLK L + +++ NLG I P +N+ Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +S+ G +LL+S D + + + +L +NQ R+ +E+ +L E ++L + Sbjct: 304 GRLADSSQGVKLLLSQDPKNIGTIVSELSAVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S IV+ WH ++ +++ARL + +P I+ ++ G G GS R+I F + ++ Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E + GGH AAGL ++ F + + +D ++ S + Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 N LI +E P+G GN +PVF +++ +++ H+++ + L+ AF Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + + L + +L + D Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578 >gi|225849696|ref|YP_002729930.1| single-stranded-DNA-specific exonuclease RecJ [Persephonella marina EX-H1] gi|225645848|gb|ACO04034.1| single-stranded-DNA-specific exonuclease RecJ [Persephonella marina EX-H1] Length = 566 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 163/589 (27%), Positives = 302/589 (51%), Gaps = 32/589 (5%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66 ++ ++G++WV L + + +K ++ ++L NR + ++ ++ + P+++ Sbjct: 1 MDSGLTGYKWVVLEEKNKAP--EDLLKKFG--KVIGQLLYNRKEIFNNNFEEENIYPTLK 56 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+ DP + D+ + + + I + ++I+I+GDYD DG S AL++ F + + Y Sbjct: 57 KLL-DPQLFNKLDRISYELAKIIKDKKRIVIYGDYDADGITSTALLVNFFKDINADVRYY 115 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP R +GYG N S ++K I++ A ++I VD G+ +Y+ L YA G+ V V+DHH+ K Sbjct: 116 IPSRFYEGYGLNRSAIKK-ISQMADVLIVVDSGTNAYEELLYAKKLGLKVFVLDHHEAKE 174 Query: 187 EEIP--AYALVNPNRLDDLSG-QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 E I ++NP DD+ HL + G+ F V++++ R+L + L LD Sbjct: 175 EIIDDEQIYILNPKLHDDIDVLFKHLASVGITFYVIIMLRRLLNLE------VKLKPYLD 228 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 +VAL TV DVVPL +NR V KG+ ++ G+KAL++ ++I +T+ ++G+++ P Sbjct: 229 IVALGTVADVVPLSLINRILVQKGIEEINKRRRTGIKALLDYLSIDK-VTSFDVGFVLAP 287 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+ ++ +LL + + + L+++L+VLN+ R+ + ++++ K+ + Sbjct: 288 RLNAAGRLDDAKKAVKLLTTKNENKGRQLSIELEVLNKKRQKLTELAFKESQVKLKKE-- 345 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ IVV + WHPGIVG++A RL ++ P+ +S ++G IGS RS +I K Sbjct: 346 --KEIKSIVVADENWHPGIVGIVAGRLAHQYKVPAVVLS-VKNGTAIGSVRSTGNINIYK 402 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 ++ + + GGH +AAGLT+ N R + + + + ++D + Sbjct: 403 VMEE--NADLFDRFGGHTLAAGLTMPSKNIERFKEILIDYVSS-LKEEDKISFIEVDMEV 459 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETL 541 S + L+ P+G GNP P F N ++ V HL+ F+ D + Sbjct: 460 PLSHWTPENVKKLKILEPFGEGNPYPKFIARNLRIDDFITVGAGNQHLKFWFKDNDGKAY 519 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 A+ + G F S G + + ++ W G + V D Sbjct: 520 PALWWGSVGF----FKKLSVGMNVDIIYTPKLSTWNGDLGVEFIVEDIK 564 >gi|309388959|gb|ADO76839.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium praevalens DSM 2228] Length = 743 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 176/557 (31%), Positives = 276/557 (49%), Gaps = 30/557 (5%) Query: 41 DIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 +I+ ++L R + AK +L P + L DP ++ + DKA RI +A+ N ++I+I+G Sbjct: 22 EILNKLLDQRGICSPEAKKRYLKPKLSYL-SDPFLMPEMDKAVNRIKKAVKNKQQILIYG 80 Query: 100 DYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 DYDVDG S AL+ RF ++ +IPDRI DGYG + S ++K + LIITVDC Sbjct: 81 DYDVDGITSTALLSRFFKKAFNLEVKTFIPDRIKDGYGLSLSALKKNLEF--DLIITVDC 138 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN-RLDDLSGQGHLCAAGVVFL 217 G T+ ++ +QGID+I+ DHH A A++N + D + G + Sbjct: 139 GITAIKEAEFLKDQGIDLIITDHHTPSDLLPEAKAIINHHLVKIDNYFAAEIAGVGTAYK 198 Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277 + + + + + L LVAL TV D+ PL NR +V KGL + Sbjct: 199 LAQALS-------PISIAENKAEFLPLVALGTVADIAPLKNENRIFVKKGLQLLVENEIL 251 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 GLK LIE + + I+A +GY+I P +NA GRI L LLIS++ +E +A KL Sbjct: 252 GLKILIEELKLDLKNISAGQIGYIIAPPLNAAGRIDNPKLALNLLISENKEESIQIAKKL 311 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 N+ R+ E + + AE+K+ + ++++ I++ WH GI+G++A+RL EK+ Sbjct: 312 IKTNKKRQKQEEKIYKNAESKI--KNLNLEKEKSIILADSSWHSGIIGIVASRLLEKYNL 369 Query: 397 PSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455 P + + K GS RSI +I + + + ++ GGH AAGL +E NF + Sbjct: 370 PVILFAIDSQTKTAKGSARSIANLNIYQALKSC--QSKIIDFGGHKAAAGLNLELDNFEK 427 Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 FQ + N + KID L+ + I L+ P+G NP P F F N Sbjct: 428 FKSLFQDYLKNNLSEEDYVKKIKIDLDLSLELITKEFILKLQKFKPFGVSNPAPKFIFKN 487 Query: 516 HKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 K + + HL++ E+ +QA+AF LG+ + + Sbjct: 488 LKAKKCYQMGKDNKHLKIYLENG----VQAVAFN-----LGKQAAAIASSNFDLVAQPEI 538 Query: 574 NYWRGSKRCQLRVLDAS 590 NYW+G + QL+V D Sbjct: 539 NYWQGKENLQLKVKDYR 555 >gi|227499576|ref|ZP_03929683.1| single-strand DNA-specific exonuclease [Anaerococcus tetradius ATCC 35098] gi|227218335|gb|EEI83589.1| single-strand DNA-specific exonuclease [Anaerococcus tetradius ATCC 35098] Length = 576 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 173/589 (29%), Positives = 278/589 (47%), Gaps = 30/589 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 W +E L + I + A VL NR++ ++ PS+ L DPL+L Sbjct: 3 NWYIYNKKENYINNL---KNKDITKLQALVLANRDIVDPKVVDMYIKPSLDKLH-DPLLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D K+ I++ I N+ +I IFGDYD DG ASV ++ L N + IP R+ DGY Sbjct: 59 PDMQKSVDLIIETIQNNGEIRIFGDYDQDGIASVMTLLDGLLFYYDNISYDIPHRVEDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G + + EK I++ L+IT D G T ++ ++ I VIV DHHQ++ E+ Sbjct: 119 GISNGMSEKAISDKVSLVITCDNGITGFEQIKKLKENNIKVIVTDHHQIEKEDNEGWVNQ 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A ++NP+RLD LC AGV F ++ +Y+ L D + L SLL+ VA Sbjct: 179 ILPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQALYQRLEGD-----SEYLNSLLEYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + TVCD+V L NR +V++GL +KAL+E +T LG++IGP +N Sbjct: 234 MGTVCDIVSLTDENRIFVIEGLKRINCTKKYAIKALLEEAGWDKEVTEYTLGFIIGPLMN 293 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L LL+ +D ++ LA +L LN R+ + L + + V D Sbjct: 294 ATGRLATAKLAIDLLMQEDIDKIHELAKELVDLNNTRKSLTEDGLNKCDKIVKENSYDKD 353 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMV 425 Q V+V+ I G++A R+KEK+ RP+ + + GS RSIE +D+ Sbjct: 354 Q--VLVIYEPSIDESICGIVAGRIKEKYYRPTIVFTDSSTENILKGSARSIETYDMH--E 409 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 S L GGH MA GL++E+ F A+ + + ID + Sbjct: 410 SIVPFADKLQSFGGHPMACGLSIEKDLLDDFRKFLNDNAN--LSNKDLEEIINIDAQIKI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAI 544 S +++ + +E P+G NP PVFA + I ++ M Q+ AI Sbjct: 468 SNLSLEFAESIEKLRPFGKDNPRPVFANKGVDIADIAMIGKDKKTMRLSLFQNGRYFNAI 527 Query: 545 AFRVYGTPLG---EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F +F + + ++ + + +N ++G++ Q++++D Sbjct: 528 KFNALDDYEYLSLKFNGKIKANKIDIVYYPDINEYKGNRSLQIKLIDIR 576 >gi|295105336|emb|CBL02880.1| exonuclease RecJ [Faecalibacterium prausnitzii SL3/3] Length = 710 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 189/575 (32%), Positives = 290/575 (50%), Gaps = 27/575 (4%) Query: 23 GQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKA 81 E LA QK ++A +L R ++ A L + DP +LTD D A Sbjct: 42 SDEKYKAVLAAQQKEN--ALLAGILAARGITDPAEALTLLAG--EEELSDPALLTDMDAA 97 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 +RI QAI N E I +FGDYDVDG + AL+ + L +P R DGYG + + Sbjct: 98 CQRIWQAIDNGETIAVFGDYDVDGVTATALLYQHLKGMGATVKCMLPSREGDGYGLSKNA 157 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ N+G LI+TVD G ++ + +A + G+D+I+ DHH A A+V+P R D Sbjct: 158 IQSMHNKGCTLIVTVDNGISAVEEADFAASLGMDLIITDHHLPPETLPKAVAVVDPRRED 217 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 D S LC AGV F + + + P L DL A+ TV DV+PL+G NR Sbjct: 218 DHSPFKGLCGAGVAFKLCAAL-------DGCPPEEMLDYCGDLAAVGTVADVMPLVGENR 270 Query: 262 AYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V GL ++ PG AL+E V PITAEN+ Y I P INA GR+ + +L Sbjct: 271 TLVKAGLRQLQQTDRPGFGALLEEVGLAGKPITAENISYAIAPRINAAGRMDNAVTALQL 330 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 ++ +D E LA KL+ +N +R+ E + + AE + Q + + ++++ G WHP Sbjct: 331 VLCEDPDRAEELAHKLNEINAHRQETEQQIFKAAEELLEQQPERLDDR-IMLLWGRDWHP 389 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++G++A+RL E+ GRP ++ +E G+G GSGRS++GF++ + +LV+ GGH Sbjct: 390 GVIGIVASRLVERTGRPVIVVTIDEHGEGKGSGRSVQGFNLHACIGSC--ADLLVRYGGH 447 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 AMAAGL+V N +L ++A P L TP D ++ + + + L+ Sbjct: 448 AMAAGLSVREENLPQLRRRLNEWAARECPVLH-TPPLTCDVAIHLDRITVECVRHLDQLA 506 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 PYGA NP PVF + + + V+ H ++ +S A+ F + L L Sbjct: 507 PYGAENPTPVFLLQSAVVDGVYPVSEGRHSRLRLRQGNSCLY-AVWFGMPAEQLPYAL-- 563 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQL--RVLDASPV 592 G + +L V + ++ QL R++D P Sbjct: 564 --GDVVDAALNLSV--YESARGAQLSGRIIDLHPA 594 >gi|282882084|ref|ZP_06290725.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus lacrimalis 315-B] gi|281298114|gb|EFA90569.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus lacrimalis 315-B] Length = 598 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 164/601 (27%), Positives = 275/601 (45%), Gaps = 42/601 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W ++ +K+ + I+ R+L+NR + S + + FL P + + P+ L Sbjct: 3 KWFIKNSKDYELSY----EKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIH-SPIFL 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D K+A I+ I I I GDYDVDG S ++ L + IP+R++DGY Sbjct: 58 KDMVKSANIIISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIGAKVSYDIPNRVLDGY 117 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV---------KS 186 G N ++++ + LIIT D G +++ ++YA N GIDVIV DHH+ + Sbjct: 118 GINNKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQE 177 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A L++P D +C A V F ++ +Y I ++ L VA Sbjct: 178 KLPDANGLIDPKVSDSKYPFKDICGACVAFKLISYLYLIKGKEE----QEVYDDFLAYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSI 305 LATVCDV+PL NR + GL + + GL ALI +I I ++G++IGP++ Sbjct: 234 LATVCDVMPLKDENRILIHYGLEALKNVQDVGLNALISACDIKKEDIDVYHIGFIIGPTL 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL+ D A ++ +N R+ + +A + Q + Sbjct: 294 NACGRLKTAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQEL-L 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ ++++ + IVG++A R+KEKF RP+ ++ + +G GSGRSI+ +++ Sbjct: 353 KKYPILLIYVPNINESIVGIIAGRIKEKFYRPTIVLT-DSNGIIKGSGRSIDEYNM--FE 409 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 V L GGH MA GL++++ NF K A + T ID LN Sbjct: 410 EVNVFRDELEAFGGHKMACGLSIKKENFNNFNLNLNKNAK--LTRDDLTKKIYIDYPLNF 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQA 543 S +N+ LI L P+G N P+F N K+ I + +++ E A Sbjct: 468 SQINMKLIQDLNKLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLED-SGVFQNA 526 Query: 544 IAFRVYGTPLGE-------------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + F+ L + ++ ++ V + VN +RG+ +LR+ Sbjct: 527 LLFKDSNEFLNDLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGNSSIELRLKSYR 586 Query: 591 P 591 Sbjct: 587 V 587 >gi|167586753|ref|ZP_02379141.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia ubonensis Bu] Length = 565 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 181/580 (31%), Positives = 268/580 (46%), Gaps = 28/580 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYAARGV---QSPSDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAALLADAIAGKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + H+ GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R A + R TA +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LD +N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDVGRAWELAQQLDTMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + Sbjct: 356 FNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGVRVKGSGRSIPGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E +LV GGHAMAAG+T++ N R F+ A + V + DG L + Sbjct: 416 EPDLLVAFGGHAMAAGVTLDTANVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKDKHLKLQL-ARGRQRFNAIWFNRT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + L + W G R QL V A Sbjct: 533 EPLPASAL---------IAYRLVADTWNGVTRVQLIVEHA 563 >gi|255507035|ref|ZP_05382674.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis D(s)2923] gi|289525492|emb|CBJ14969.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis Sweden2] gi|296435045|gb|ADH17223.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis E/150] gi|296438765|gb|ADH20918.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis E/11023] Length = 584 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 162/582 (27%), Positives = 272/582 (46%), Gaps = 13/582 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S G +W E + I+++ + +A+VL++R SI +DFL+P + L Sbjct: 7 SSLGQKWDYPKHNEVFLK--KISKEFHLHPAIAQVLISRGFQSIQEIRDFLHPQLSSLHS 64 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D +KA R++QA N+E +MI+GD DVDG V L++ FL V + Sbjct: 65 T-SLFLDMEKAVVRLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +G SL+ + + +G L+ITVDCG T+ +Q QGIDVIV DHH + Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVQAINKQGIDVIVTDHHMPTGKLPH 183 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249 A++NP + L GV F ++ Y L +QD DLL LDLV+L T Sbjct: 184 CIAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308 + DV L G NR V G+ + GLK L + +++ NLG I P +N+ Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +S+ G +LL+S D + + + +L V+NQ R+ +E+ +L E ++L + Sbjct: 304 GRLADSSQGVKLLLSQDPKNIGTIVSELSVVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S IV+ WH ++ +++ARL + +P I+ ++ G G GS R+I F + ++ Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E + GGH AAGL ++ F + + +D ++ S + Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 N LI +E P+G GN +PVF +++ +++ H+++ + L+ AF Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + + L + +L + D Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578 >gi|120612346|ref|YP_972024.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax citrulli AAC00-1] gi|120590810|gb|ABM34250.1| exonuclease RecJ [Acidovorax citrulli AAC00-1] Length = 571 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 176/578 (30%), Positives = 267/578 (46%), Gaps = 30/578 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 RA+ ++ + ++AR+ R V+ A D L+ ++ L+P P L +AA + Sbjct: 9 PPRAVWALEQAGVHPLLARLYAARGVT---AHDELDDALARLLPPP-GLRGTREAAALLA 64 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145 AI +I++ DYD DGA + A+ +R L + +PDRI DGYG +P++ + Sbjct: 65 DAIAQDRRIVVVADYDCDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRV 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 GA L++TVD G S + + A G+ V+V DHH E A A+VNPN+ Sbjct: 125 RERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDHHLPGPELPQADAIVNPNQPGCSFE 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + GV+F VL+ + LR+ L LL LVAL TV DVV L NR Sbjct: 185 SKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDANNRRL 244 Query: 264 VVKGLMVARRQGNPGLK-ALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R P AL + + + T + G+ +GP INA GR+ + LG L Sbjct: 245 VAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLGIECL 304 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380 ++DD LA LD +N+ RR +E M EQA + + + + + V +H Sbjct: 305 LTDDPGRAAELARTLDAINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHE 364 Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434 G+VG++A+R+K++ RP+F + ++ + GSGRSI GF + + G++ Sbjct: 365 GVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGSGRSIPGFHLRDALDLVAKRHPGVI 424 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGHAMAAG TV + F F + A + A DG L+ L+D Sbjct: 425 LKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRAELVD 484 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVV--NLAHLQMTFESQDSETLQAIAFRVYGTP 552 L +G G P F ++ S R+V HL + Q + I F Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVEIISQRLVGEGKNHLSLKLLHQ-GRPVDGIWFGHTE-- 539 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R+ + L VN W+G +R Q V A Sbjct: 540 -------PLPARVLLAFRLDVNEWKGERRVQFLVEGAQ 570 >gi|228982451|ref|ZP_04142710.1| Single-stranded-DNA-specific exonuclease recj [Bacillus thuringiensis Bt407] gi|228776634|gb|EEM24942.1| Single-stranded-DNA-specific exonuclease recj [Bacillus thuringiensis Bt407] Length = 573 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 150/582 (25%), Positives = 258/582 (44%), Gaps = 30/582 (5%) Query: 17 RWVSLLGQEGIN---RALAITQKHA-IPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 +W+ + L ++ + D V +L NR + + FL+ I M + Sbjct: 8 KWIRPENTVERRGKLQDLRNAKELNHLADCVLEILYNRGFDTIEKIESFLHMDITD-MHN 66 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P ++ D DKA + AI N+ I+++GDYD DG ++ ++ + L + + ++ +R Sbjct: 67 PQLMKDSDKAVSLLSHAIKNNLHIVVYGDYDCDGVSATSVAVLALRNLGAKVSYFVNNRF 126 Query: 132 VDGYGPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-E 188 GYG N +E +++TVD G +Y+ ++ A G+ VIV DHH Sbjct: 127 KHGYGMNVLGLEDMMKKYPDVDVVLTVDNGIVAYEGIKKAKELGLTVIVTDHHDPGDHLP 186 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A A+VNP R D LC A V++ V++ +Y L +D + ++D+V +A Sbjct: 187 EEADAVVNPKRHDCEYPFKGLCGASVIYKVMLQLYWELDKD-----LDYVQDMIDIVGIA 241 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 TV D++PLI NR +V + + +R K L E+ + IT E G+ P INA Sbjct: 242 TVGDIMPLIDENRVFVTESIRQVKRAQRHVFKVLQEKTGVKE-ITEETYGFKYVPMINAL 300 Query: 309 GRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GRI G+ + + +S D +++ + K+ N+ R+ + A V + Sbjct: 301 GRITGDVDEAIEMFVSQDEEKIPEIVEKVIETNEYRKQITEEQEALAIQMVEEKGIK--- 357 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 VIV+ +H GIVGL+A RLKE++ RP ++ E G GS RSI F I K F Sbjct: 358 -PVIVIYHPSFHEGIVGLIAGRLKERYFRPVIVLA-EGHGFIKGSARSIPNFHIKKA--F 413 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + L+ GGH MA GL+++ + + A + + P +D V+ Sbjct: 414 DETKEYLIGYGGHPMAGGLSLKEEHLEAFEEKICSLAESQLTEADFIPRIMVDTVVEPKD 473 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 V + L++ L+ P+G P F K+ + + + + + L+ I F Sbjct: 474 VTVDLVEELDVLKPFGEAFSKPNFGLKGFKVDKVYYMGENKNHLKLKE---KKLEIIMFN 530 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + G+ +N W + Q + Sbjct: 531 RADI----YQEMQEPRNIKALGYPSLNIWNNNVSVQFNIEGI 568 >gi|83590517|ref|YP_430526.1| single-stranded-DNA-specific exonuclease RecJ [Moorella thermoacetica ATCC 39073] gi|83573431|gb|ABC19983.1| exonuclease RecJ [Moorella thermoacetica ATCC 39073] Length = 911 Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 185/575 (32%), Positives = 283/575 (49%), Gaps = 21/575 (3%) Query: 23 GQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLILTDCDKA 81 + LA+ ++ I I A++L+NR ++ A F P L+P P + A Sbjct: 2 PPVNLPERLALARELHISPITAQILINRGITTAAAARAFFQPDPANLIP-PEKIPGLPAA 60 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 R+VQAI EKIM+ GDYDVDG A+ A+M+ L+ V A +Y+PDR+ +GYG Sbjct: 61 RERLVQAIEKREKIMVHGDYDVDGLAATAIMLETLARLGVEAEVYLPDRLTEGYGLKKKS 120 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 + K + QL+ITVDCG TS + +A QG+D+I+ DHH+ + A A+VNP Sbjct: 121 LIKALELNCQLVITVDCGITSLEEAIFAREQGLDLIITDHHRPGTSLPQASAVVNPLL-- 178 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 G LC AGV F + + + + LDLVALAT+ D VPL+G NR Sbjct: 179 -APGLPPLCGAGVAFKLAQSLATHFGLAPQGGVAAGWA--LDLVALATIADAVPLLGENR 235 Query: 262 AYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V GL PGLKAL E + TA + + + P +NA GR+G + + Sbjct: 236 LLVQLGLKALSGSMRPGLKALAEVAGLPAREWTAREVAFGLVPRLNACGRLGNAMPALEI 295 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L++ Q LA +L NQ RR +E ++ +AEA +T + V + + WHP Sbjct: 296 LLTSSPQRALELAQRLQEENQARRHLEESIAAEAEAMAVTALAAGAKGLV--LAAEGWHP 353 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G+ G++AARL EK+ P I+ D +G GSGRS+ G ++ ++ + L+ GGH Sbjct: 354 GVTGIIAARLVEKYNCPVVLIAVVGD-RGRGSGRSLPGINLHEIFARC--RSYLLSFGGH 410 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 A A GL + F + +++ + T P + + S ++ L++ LE Sbjct: 411 ARAGGLEIAAKEIPAFQAAFNEIVKSLMAEVQTPPEVAPEAEVLVSQLDWQLLEELEQLA 470 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G GNP PV +++ R V AHL++T + + AI F + P Sbjct: 471 PFGEGNPRPVLVTRRALIKAARQVGRDGAHLKLT-AGGEGREIGAIGFNLSLPP-----G 524 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 S G + + +L N +R + QLR++ E Sbjct: 525 LSPGHHVDLAFYLERNTYRDREELQLRLVALKAAE 559 >gi|78047468|ref|YP_363643.1| putative single-stranded-DNA-specific exonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035898|emb|CAJ23589.1| putative single-stranded-DNA-specific exonuclease [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 579 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 173/565 (30%), Positives = 271/565 (47%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDAQGAQ---PRLGQLL-SPELLHNSGVAAELLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEMLPPADAIVDPNLAEDTFPSKTLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + +LR+ DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 200 LALRSVLRKRGAFAGRAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSQAREIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEHAVTKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFLAQVTAMVDASLLHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDGQ-FEVLQHRVLKDRHLKLTLRCPGRAEPLNAIHFNGWRGSDPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V PV Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPVT 576 >gi|157363235|ref|YP_001470002.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga lettingae TMO] gi|157313839|gb|ABV32938.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga lettingae TMO] Length = 979 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 161/560 (28%), Positives = 275/560 (49%), Gaps = 25/560 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW+ Q + ++Q+ I +A++LVNR + A FL PSI L DP +L Sbjct: 2 RWIIK--QVDQQKVEFLSQEAGISLFLAKILVNRGIEDPKIANRFLKPSILDLH-DPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+ +++A + ++I+GDYD DG +A+ FL + YIP R+ +GY Sbjct: 59 RDMDRVVELLLKAREENIPVLIYGDYDADGITGIAVYKEFLDRYGWVTDYYIPKRMDEGY 118 Query: 136 GPNPSLMEK-FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G P+++E+ F +++TVDCG T+ +A+++A V++ DHH+V + A A+ Sbjct: 119 GIQPAVIEQFFKKFNKGIVLTVDCGITAIEAVEFAKKFNCLVLITDHHEVGEQLPDAAAV 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P R DD L GV F V+ I + L ++ LL+ VA+ T+ D+V Sbjct: 179 VDPKRPDDDYPFKDLAGVGVAFKVVSAISQKLNIQ-----IEEIFDLLEFVAIGTIADMV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L+ NR V GL +R G PGL L +R+ I+ + ++GY + P +NA GR+ + Sbjct: 234 KLVDENRFMVKTGLEKLKRTGKPGLSILFKRLGINE-PDSRDIGYRVAPKLNAAGRLDSA 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + LLIS D E L L N R+ +ES + +A ++ + + + +IVV+ Sbjct: 293 DDAFELLISRDETSAEKLVNLLFEYNSTRQEIESEIFMRAVEQI--EERGLHKDPIIVVK 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 GD WH G++G++A RL ++G+P IS + G GS RSI ++ +++ Sbjct: 351 GDNWHVGVIGIVATRLVHRYGKPVMVISNSD-GIARGSARSIPNLNLIELLQ--PLSSYF 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +A G +++ N + + F +P V +ID L +N + Sbjct: 408 YEFGGHPLAVGFSLDSNNVDDFAELLRNF---EIPIEDVPDVLEIDEDLQLEQINEETLK 464 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTP 552 + P+G GN P+F N +SI+ H ++M F + + ++AI F + Sbjct: 465 DIGKLEPFGHGNNEPIFVARNVIAESIKFFGQNHANVKMNF-TVNGAKIEAIGFGLDHAF 523 Query: 553 LGEFLMQSRGKRMHVTGHLC 572 + ++ + + Sbjct: 524 DKSIYECN---KVDIVFSIR 540 >gi|254444757|ref|ZP_05058233.1| single-stranded-DNA-specific exonuclease RecJ [Verrucomicrobiae bacterium DG1235] gi|198259065|gb|EDY83373.1| single-stranded-DNA-specific exonuclease RecJ [Verrucomicrobiae bacterium DG1235] Length = 571 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 163/581 (28%), Positives = 272/581 (46%), Gaps = 23/581 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W ++ + + VA +L + + A FLNP + + P ++ Sbjct: 4 WNYSPPSTDLSN--QYLKALKVGPTVAELLARLDFADTEEASRFLNPRLGEI-DCPFGIS 60 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + + AARRI QAI N ++I+I GDYDVDG S AL++ L +P R+ +GYG Sbjct: 61 NLESAARRISQAIENRQRIVICGDYDVDGVTSTALLVAILQKFETYPAYIVPLRLEEGYG 120 Query: 137 PNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 + +E+ L I +DCG+ S D +Q+ + G DV+V+DHHQ K L Sbjct: 121 LSQKAVERALDKANQPDLFIALDCGTNSIDEVQHILDAGCDVVVVDHHQSKEGLPEGAIL 180 Query: 195 VNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD-LLSLLDLVALATVCD 252 VNP+ D D + C G+VF + + +I R+ + L + LDLV++ TV D Sbjct: 181 VNPHVNDRDSANHCQFCTVGLVFKLAHGLLKIRREKDDPRAFEIKLRNFLDLVSMGTVAD 240 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGR 310 +VPL NR + GL V R GL+ L++ + + ++ + +GP INA GR Sbjct: 241 MVPLNKENRTFARIGLQVLSRTERIGLQNLMKVSGVAAKHGVNPIDVSFRLGPRINASGR 300 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + ++++ L++SDD ++KLD N+ R+ +E AM E A ++ + + + Sbjct: 301 LADASVAVELILSDDPSFCLETSLKLDSFNRERQEIERAMTENALEQI---KNSDTERNG 357 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV GD WHPG+VG++A+R+ F RP+ + E GSGRSI+G D+ + A Sbjct: 358 LVVYGDDWHPGVVGIVASRVSRSFNRPAIVLG-REGDLAKGSGRSIDGIDL--VEVLAPF 414 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 L GGH MA G++++ +FF K + + +I L ++ Sbjct: 415 SEKLESWGGHPMAVGVSMKVERVEEFTEFFDKAIGEYLASHQVERTLEIASWLRLEDIDT 474 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 L+ L P+G NP P+ A + V H + T ++ + +A+++ Sbjct: 475 KLMKDLSMLEPFGQANPEPILAARRILFGTKLTVFKDLHFRFTLTTRRKHVISGVAWKMA 534 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + L N + K QL ++D Sbjct: 535 ER------IPPANTPVDIAFRLVWNTFGNKKALQLELVDWR 569 >gi|325132017|gb|EGC54715.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M6190] Length = 566 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|309379410|emb|CBX21977.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 566 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + ++P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFFVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ + +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRDYFSDGIKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R G + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSGD---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|134296297|ref|YP_001120032.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia vietnamiensis G4] gi|134139454|gb|ABO55197.1| exonuclease RecJ [Burkholderia vietnamiensis G4] Length = 565 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 179/564 (31%), Positives = 269/564 (47%), Gaps = 27/564 (4%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 +H + ++AR+ +R V + + ++ L+P P L C AA + AI ++ Sbjct: 19 RHGLHPVLARLYASRGV---QSPTDIETALARLVP-PTDLKGCADAAALLADAIAERRRL 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 ++ DYD DGA + A+ +R L + +P+R GYG P ++E L+IT Sbjct: 75 LVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVELAAARKPDLLIT 134 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G S ++ A +GIDV+V DHH A A+VNPN+ H+ GV+ Sbjct: 135 VDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPGCAFPSKHIAGVGVM 194 Query: 216 FLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 F VL+ + LR+ L LLDLVAL TV DVV L G NR V +GL R Sbjct: 195 FYVLLALRAELRRRGAFASKDAEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGLHRIR 254 Query: 273 R-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + PG+ AL + + +LG+ +GP +NA GR+ + +LG LI+DD Sbjct: 255 NGRMQPGIAALFRAAGRDARTASGFDLGFGVGPRLNAAGRLSDMSLGIECLITDDIGRAW 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 LA +LD +N+ RR +E+ M +QA A + D A I + WH G++G++A RL Sbjct: 315 ELAQQLDAMNRERREIEAGMQQQALADLAD--VDPADACTITLFNPAWHQGVIGIVAGRL 372 Query: 391 KEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGL 446 KEKF RPSF + ++ GSGRSI GF + + E ++V GGHAMAAGL Sbjct: 373 KEKFHRPSFTFAHADESGTRVKGSGRSIAGFHLRDALDLVSKREPDLIVAFGGHAMAAGL 432 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 T++ N R F+ A + V + DG L + + +L+ +G G Sbjct: 433 TLDTANVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVGLLDE-AVWGQGF 491 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P P+F+ + S +V HL++ ++ + AI F L Sbjct: 492 PAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHTEPLPASAL--------- 540 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + L + W G R QL V A+ Sbjct: 541 IAYRLVADTWNGVTRVQLVVEHAA 564 >gi|167766766|ref|ZP_02438819.1| hypothetical protein CLOSS21_01274 [Clostridium sp. SS2/1] gi|167711520|gb|EDS22099.1| hypothetical protein CLOSS21_01274 [Clostridium sp. SS2/1] Length = 576 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 151/585 (25%), Positives = 266/585 (45%), Gaps = 33/585 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + N+ I +K I ++AR++ NR+V + + +L + + DP ++ Sbjct: 4 QWYLYKKKANFNQ---IGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDI-SDPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + Q + + I I DYDVDG S ++ + + + IPDR+ DGY Sbjct: 60 KGVKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLGGKIDFQIPDRMKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N +++EK + + I+T D G + DA+ Y G+ +I+ DHH V Sbjct: 120 GINENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRK 179 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA ++NP + LC AGV F + Y+ + +D L LL ++ Sbjct: 180 EVLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEEDES-----QLEELLSML 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATVCDVV L G NR +V +GL + N GLKAL+ + + I + LG+++GP Sbjct: 235 AIATVCDVVDLTGENRIFVKEGLRRIKDTQNIGLKALLNVHDLMDKQIQSYALGFIVGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + L + +D ++ + A +L LN R+ M +++A + + Sbjct: 295 INASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE--YE 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V+V+ H I G++A R+K++ P+F ++ ++G GSGRSIEG+ + Sbjct: 353 AKGDKVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEGI-KGSGRSIEGYSM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + K GGH MAAG ++E+ + + +ID + Sbjct: 410 EEMMKVKEVFTKFGGHPMAAGCSLEKEKLQEFRKKINENC--TLEKKDFAKKVQIDIDMP 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 + + LI L P+G N P+FA K++ + V +++ +S + Sbjct: 468 VDYITMDLIHQLSVLEPFGKENKKPLFAHRKLKVERVNVFGKNKNVIKLALKSSQGTRID 527 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F K + T + +N ++G K Q+ + Sbjct: 528 GMIF---EDEDEFREKMGTSKYITCTYYPVINEYQGYKSLQINIQ 569 >gi|261377442|ref|ZP_05982015.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria cinerea ATCC 14685] gi|269146163|gb|EEZ72581.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria cinerea ATCC 14685] Length = 566 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ + +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRHYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|254670459|emb|CBA06115.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis alpha153] Length = 566 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++A++ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIAQLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAARRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q +V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAK-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|15835347|ref|NP_297106.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydia muridarum Nigg] gi|270285518|ref|ZP_06194912.1| single-stranded-DNA-specific exonuclease [Chlamydia muridarum Nigg] gi|270289529|ref|ZP_06195831.1| single-stranded-DNA-specific exonuclease [Chlamydia muridarum Weiss] gi|301336915|ref|ZP_07225117.1| single-stranded-DNA-specific exonuclease [Chlamydia muridarum MopnTet14] gi|7190761|gb|AAF39542.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydia muridarum Nigg] Length = 582 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 162/586 (27%), Positives = 274/586 (46%), Gaps = 21/586 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S G +W E + I ++ + ++A+VLV+R S+ +DFL P L P Sbjct: 7 SALGQKWTYPKHNEEFLK--KIIKELYLHPVIAQVLVSRGFQSVQEIRDFLYPQFPSLHP 64 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 D +KA R++++ N+E +MI+GD DVDG V L++ FL V + Sbjct: 65 A-SSFLDMEKAVARLLKSKENNEHVMIYGDGDVDGITGVTLLVEFLQMLGVKTSYCCSGT 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +G SL+ + + +G L+ITVDCG T+ ++ QGIDVIV DHH + Sbjct: 124 LFKQHGEITSLISQMLQDGVSLLITVDCGITAGREVRSINKQGIDVIVTDHHTPTGKLPH 183 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249 A +NP + L GV F ++ Y L +QD DLL LDLV+L T Sbjct: 184 CIATLNPKLDKNSYPNKELTGVGVAFKLVCATYEELIKQDASWKDKIDLLHFLDLVSLGT 243 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308 + DV L G NR V G+ + GLK L + I++ NLG I P +N+ Sbjct: 244 IADVGRLSGENRILVSYGIKEITKGKRLGLKKLCSLSGVDKSDISSTNLGIRITPKLNSL 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +S+ G +LL+S D + + + +L ++NQ R+ +E+ +L E ++L + Sbjct: 304 GRLADSSQGVKLLLSQDPRTVGTIVSELAIVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S IV+ WH ++ +++ARL + +P I+ ++ G G GS R+I F + ++ Sbjct: 363 SAIVLASPYWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGAFPLLGVLRKC 421 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E + GGH AAGL ++ F ++ + T +D ++ S + Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEEQIEGFRKKFIHLVNSSLRKDEATLTLPLDVCMDFSQI 479 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 + LI +E P+G GNP+PVF +++ ++++ H+++ + L+ AF Sbjct: 480 SQDLISSMELLEPFGKGNPSPVFYTRAIQVRYPKLLSGNHVKLYL-NSGERNLEGTAFGQ 538 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR----CQLRVLDAS 590 L + + + L V + +L + D Sbjct: 539 GDKI--SLLKANWNMPLDIAYTLRVM----KRSVHGAVRLLIQDFR 578 >gi|254492425|ref|ZP_05105597.1| single-stranded-DNA-specific exonuclease RecJ [Methylophaga thiooxidans DMS010] gi|224462317|gb|EEF78594.1| single-stranded-DNA-specific exonuclease RecJ [Methylophaga thiooxydans DMS010] Length = 585 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 175/568 (30%), Positives = 274/568 (48%), Gaps = 24/568 (4%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 PD + R++ R + F + L P P + D+A +V+A+ K+ + Sbjct: 22 PDCIRRIMAARGIKQAEQLFF---ELANL-PRPQQMLGMDQAVAIMVEALQKQWKVTVVA 77 Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINE--GAQLIITV 156 D+D DGA S AL +R L + N +P+R + GYG P L++ N L++TV Sbjct: 78 DFDSDGATSCALAIRGLRAMGLQHINFIVPNRFIHGYGLTPELLDDIPNTTEQPDLLLTV 137 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + ++ A +GI V+V DHH A A+VNPN+ D +L GV F Sbjct: 138 DNGIAAVAGVEAAQQRGIKVLVTDHHLAGEVLPTADAIVNPNQAGDAFPSKNLAGVGVCF 197 Query: 217 LVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +L+ + + LR+ + L LD+VAL TV DVVPL LNR V GL R Sbjct: 198 YLLLGLRQALREQDWFMQQNLDEPKLSDWLDIVALGTVADVVPLDKLNRTLVDIGLKRIR 257 Query: 273 R-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + G++AL + + + +L + I P +NA GR+ + LG LL++D+ Q+ Sbjct: 258 SGRACAGIRALSQIAGRETDKLVSPDLAFSIAPRLNAAGRMEDMGLGINLLLTDEWQDAL 317 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGIVGLLAAR 389 +A +LD +N RR +E M + A + + A + WH G++GLLA+R Sbjct: 318 SIAAQLDQINLERRGVEQQMQQDALTMLDKLSLETATVAPGYCLYDPEWHQGVIGLLASR 377 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLT 447 +KEK RP A + +G+ GS RSI G I +++ A +L + GGHAMAAGLT Sbjct: 378 IKEKMHRPVIAFAPGNEGEIKGSARSIAGIHIRDVLARIAAQNPTMLQRFGGHAMAAGLT 437 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ + F+ + V A + DG L+ + + L + L A P+G G Sbjct: 438 LKLNDLDNFRVAFEAVLTDSVDAAVYQQQLATDGELSHHEITLQLAEQLPQAAPWGQGFE 497 Query: 508 NPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P F ++S R+V HL+++ + DS + A+AFR E RG ++ Sbjct: 498 EPRFHGL-FDVKSWRLVGQEADHLRLSLQLGDSREITAMAFRQQKPEWLE-----RGSKI 551 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + L VN +R +K Q + D P + Sbjct: 552 LIRYRLAVNEFRATKTIQFLIDDLLPPQ 579 >gi|254427998|ref|ZP_05041705.1| single-stranded-DNA-specific exonuclease RecJ [Alcanivorax sp. DG881] gi|196194167|gb|EDX89126.1| single-stranded-DNA-specific exonuclease RecJ [Alcanivorax sp. DG881] Length = 572 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 175/564 (31%), Positives = 266/564 (47%), Gaps = 21/564 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++AR+L R V+ L+ ++ L P P A ++Q + +I I Sbjct: 21 DVPPMLARILAGRGVTDPAL---LDLGLKRL-PHPEQFIGLRGAVALLLQGRTDHWRICI 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155 GDYD DGA + LM+R L + +PDR GYG +P++++ LIIT Sbjct: 77 VGDYDADGATATTLMVRGLERLGYPRPDFLVPDRFEYGYGLSPAIVDLAKELYDPDLIIT 136 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD-LSGQGHLCAAGV 214 VD G S D + A QG+ V++ DHH A ALVNP +L GV Sbjct: 137 VDNGIASVDGVAAARAQGMRVLITDHHLPGDTLPEADALVNPRLPGCEDFPATNLAGVGV 196 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 F +L+ + R LR+ + LLDLVAL TV DVV L NR V +GL R Sbjct: 197 AFYLLMDLQRALREQGVAASAP-ITDLLDLVALGTVADVVVLDDANRVLVEQGLRRIRAG 255 Query: 275 G-NPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL++ + A ++G+ +GP +NA GR+ + G L+++ E + Sbjct: 256 KGCPGIRALLQVAGRDPNRVLAADMGFAVGPRLNAAGRLTDMTQGIACLLAETDAEATEM 315 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A LD +N+ RR +E M + A +V D + + + G WH G+VG+LA+R+KE Sbjct: 316 AQDLDTINRERRSIEHGMRDAAMEEVARLDAD-NLPAGLCLYGKEWHEGVVGILASRVKE 374 Query: 393 KFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 RP A + ++ G+ GSGRSI G + + G+L K GGHAMAAGL++E Sbjct: 375 AIHRPVIAFAPAQQRGQLKGSGRSIPGLHLRDALDAVATANPGLLSKFGGHAMAAGLSLE 434 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F+K ++ + + DG L +++ ++L P+G G P P Sbjct: 435 LEKLDAFKAAFEKAVGELLSPKALERIVETDGELEDHELSLTNAELLSHRFPWGQGFPAP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ R+V HL++T S + AI F V L + + RG Sbjct: 495 SFDGE-FEVLKHRIVGERHLKLTLGLPGVSGVIDAIHFNVAVDALPSRINKVRG-----V 548 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L VN +RG + QL P+ Sbjct: 549 YRLEVNEFRGQRNPQLLFEHLIPL 572 >gi|282934714|ref|ZP_06339957.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii 208-1] gi|297206113|ref|ZP_06923508.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii JV-V16] gi|281301289|gb|EFA93590.1| single-stranded-DNA-specific exonuclease [Lactobacillus jensenii 208-1] gi|297149239|gb|EFH29537.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii JV-V16] Length = 753 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 154/576 (26%), Positives = 271/576 (47%), Gaps = 36/576 (6%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W E + + +K+ + + A++ R ++ D ++ S DP ++ Sbjct: 3 WKKR---EATELSSELIEKYQLSPLTAKLFSLREINTDEKLNYWLNSTEEDFADPYLMHG 59 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 + RI QAI N EKI I+GDYD DG + +M L+ + + +IPDR DGYGP Sbjct: 60 MQETVDRINQAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + ++ + +G +LIITVD G T + ++YA + G DVIV DHH + + A A+V+ Sbjct: 120 SMKRYQQIVADGTKLIITVDNGVTGIEEVRYAQDNGCDVIVTDHHSFQEQMPEAKAIVHC 179 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N + C AGV + + + + L++L + T+ D+V + Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRALME-----------DTMPELIELAMIGTIGDMVKVS 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316 G V +GL + PGL+ALI+ + I + G+ I P +NA GR+ + L Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDTGFQIAPRLNATGRLASARL 288 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL+SDD +E + LA K++ LN R+ + + E A ++ + Q V + Sbjct: 289 AVDLLLSDDLEEAQKLAKKVEELNNERKELTQKVYESALNQIKKFGYNSQNTLV--LYDS 346 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++GL+A ++ EK +P+ ++ EDG GSGRS GF++ + + ++ + Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTKNEDGLVKGSGRSNAGFNLFEALFKL-KDSLFEN 405 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A GL+++ L N A + D L+ ++V+++++D + Sbjct: 406 FGGHDFACGLSLKEDKINSLRK----AFENSYQASSNNAIDYYDLDLDTNSVDLSILDDM 461 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 + GP+G NP PV+ ++ S+ V+ HL+ + L+ I F + Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKNHLKFNVGN-----LKIIGFNMA----- 511 Query: 555 EFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589 +L Q+ + ++ N W+ Q ++ Sbjct: 512 -YLTQNLLPYVTAIYLNISKNMWQKKLSLQGQLKSI 546 >gi|256851246|ref|ZP_05556635.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii 27-2-CHN] gi|260660670|ref|ZP_05861585.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii 115-3-CHN] gi|256616308|gb|EEU21496.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii 27-2-CHN] gi|260548392|gb|EEX24367.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus jensenii 115-3-CHN] Length = 753 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 154/576 (26%), Positives = 271/576 (47%), Gaps = 36/576 (6%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W E + + +K+ + + A++ R ++ D ++ S DP ++ Sbjct: 3 WKKR---EATELSSELIEKYQLSPLTAKLFSLREINTDEKLNYWLNSTEEDFADPYLMHG 59 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 + RI QAI N EKI I+GDYD DG + +M L+ + + +IPDR DGYGP Sbjct: 60 MQETVDRINQAIDNFEKITIYGDYDADGITATTIMYETLAILGADVHYFIPDRFKDGYGP 119 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + ++ + +G +LIITVD G T + ++YA + G DVIV DHH + + A A+V+ Sbjct: 120 SMKRYQQIVADGTKLIITVDNGVTGIEEVRYAQDNGCDVIVTDHHSFQEQMPEAKAIVHC 179 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N + C AGV + + + + L++L + T+ D+V + Sbjct: 180 NYPNQKYPFDDYCGAGVAYTICRALME-----------DTMPELIELAMIGTIGDMVKVS 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNL 316 G V +GL + PGL+ALI+ + I + G+ I P +NA GR+ + L Sbjct: 229 GEGHIIVKRGLELLNHTQRPGLRALIKEAGLELGNIDETDTGFQIAPRLNATGRLASARL 288 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL+SDD +E + LA K++ LN R+ + + E A ++ + Q V + Sbjct: 289 AVDLLLSDDLEEAQKLAKKVEELNNERKELTQKVYESALNQIKKFGYNSQNTLV--LYDS 346 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++GL+A ++ EK +P+ ++ EDG GSGRS GF++ + + ++ + Sbjct: 347 SWHEGVLGLVANKIVEKVHKPTILLTKNEDGLVKGSGRSNAGFNLFEALFKL-KDSLFEN 405 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A GL+++ L N A + D L+ ++V+++++D + Sbjct: 406 FGGHDFACGLSLKEDKINSLRK----AFENSYQASSNNAIDYYDLDLDTNSVDLSILDDM 461 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 + GP+G NP PV+ ++ S+ V+ HL+ + L+ I F + Sbjct: 462 KKVGPFGTDNPEPVYCVKEPEISSLFVIGKDKNHLKFNVGN-----LKIIGFNMA----- 511 Query: 555 EFLMQSRGKRMHVTG-HLCVNYWRGSKRCQLRVLDA 589 +L Q+ + ++ N W+ Q ++ Sbjct: 512 -YLTQNLLPYVTAIYLNISKNMWQKKLSLQGQLKSI 546 >gi|309781214|ref|ZP_07675951.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia sp. 5_7_47FAA] gi|308920035|gb|EFP65695.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia sp. 5_7_47FAA] Length = 564 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 171/561 (30%), Positives = 265/561 (47%), Gaps = 23/561 (4%) Query: 37 HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 H I ++AR+L R V+ L+ + L+P P L D AAR + AI ++++ Sbjct: 20 HGIHPVLARILAARGVARPDE---LSTELTDLLP-PAQLKGIDDAARYLADAIAAKKRLL 75 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I DYD DGA + A+ +R L + +P+R GYG +P ++ +E +++TV Sbjct: 76 IIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAHEKPDVLVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + A GIDV+V DHH ++ A +VNPN+ +L GV+F Sbjct: 136 DNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGFPSKNLAGVGVMF 195 Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR+ L +LLDLVAL TV DVV L NR V +GL R Sbjct: 196 YVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANNRLLVAQGLKRMRAG 255 Query: 274 QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG+ AL + + +LG+ +GP +NA GR+ + +LG L++DD + Sbjct: 256 RMCPGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSI 315 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAARLK 391 A +LD +N+ RR +E+ M ++A A + + D I V + WH G++G++A+R+K Sbjct: 316 AAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVE 449 +KF RP F + +DG GSGRSI GF + + + G++VK GGHAMAAGLT+ Sbjct: 376 DKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRSPGLIVKFGGHAMAAGLTLR 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F F+ + + + V + DG + +++LE+ +G G P P Sbjct: 436 EDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVELLET-QVWGQGFPAP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F L V + + AI F G +V Sbjct: 495 SFCGEFDVLSQA--VLKDKHLKLKLGRGKQHFDAIWFNHAE---------PLGASAYVAY 543 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L N + G R Q+ + A Sbjct: 544 RLDNNTFNGITRVQMVIEHAQ 564 >gi|29839946|ref|NP_829052.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila caviae GPIC] gi|29834293|gb|AAP04930.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila caviae GPIC] Length = 590 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 149/566 (26%), Positives = 262/566 (46%), Gaps = 13/566 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S+ WV ++ A+ ++ + I A++ ++R +++ +DFL + L Sbjct: 6 NSSVPSPNWVY--PKQDPALLSALIKELHLHPIAAQIFISRGFQTVNEVRDFLYVHLDNL 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DP +L D KA R++ A +E +M++GD DVDG VAL++ FL + + Sbjct: 64 H-DPELLLDMTKAIERLLLAKERNEHVMVYGDSDVDGMTGVALLVEFLRSIDMKVSYCFL 122 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 ++ YG SL+ K E L+ITVDCG T+ + QGIDVI+ DHH + Sbjct: 123 GALLKHYGEPSSLIAKMKEEKVTLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGKI 182 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A +NP D L GV F + + LR++N L D LLDLV L Sbjct: 183 PHCIATLNPKLRDRAYPNKELTGVGVAFKLARGVLNALRKENP-KLKVDTKHLLDLVTLG 241 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307 TV DV L+G NR V G+ + GL L + +T+ ++ I P +N+ Sbjct: 242 TVTDVGTLLGENRTMVRHGIKEIAKGSRLGLHKLCIFAGVKPSEVTSTDIVLKISPKLNS 301 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ ++ G LL++ D + + + LD +N+ R+ +E+ + K+L +I + Sbjct: 302 LGRLADAAKGVELLLTQDPETADEIIQYLDKINRERQKIEADVFHDV-QKILKNKPEIVK 360 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 + IV+ + WH ++ +++ARL + + +P IS + G G GS R+I F + ++ Sbjct: 361 QAAIVLSSNDWHARVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQK 419 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + + GGH AAG+ + F ++ + +D + Sbjct: 420 C--SSLFISYGGHDFAAGIIINEDQVEAFRKKFIHLVNSSLKKDKAVLTLPLDAQADFDE 477 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 ++ L+ ++ P+G GNP PVF H+++ +++ HL++ + L+ IAF Sbjct: 478 IDHDLLSSIDLFEPFGKGNPMPVFYTIVHQVRYPKLLPGNHLKLYL-NHGERNLEGIAFG 536 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCV 573 + E L + K + + + Sbjct: 537 LGDRI--EALKANWNKPLELAYTPRL 560 >gi|71083701|ref|YP_266421.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter ubique HTCC1062] gi|71062814|gb|AAZ21817.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter ubique HTCC1062] Length = 564 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 170/579 (29%), Positives = 295/579 (50%), Gaps = 20/579 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 S+SG +W + I + Q+H +I++R++++R D +N + + + Sbjct: 3 SVSGKKWEQKKINQNI--VDKLKQEHDFSEILSRLIISRKFDNDEIAT-INTDLD--LNN 57 Query: 72 PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D ++ +V +I N+EKI I GDYDVDG+A+ +L ++F + YIPDR Sbjct: 58 VFLNNKDFSQSINLVVNSINNNEKICILGDYDVDGSAATSLFVKFFEDINHPFFYYIPDR 117 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGYG L +K I E +LII VDCGSTS +A+ + I ++IDHH++ Sbjct: 118 EKDGYGATKKLFQKLILEKPKLIIMVDCGSTSNEAIDFLNENEIKSLIIDHHEINKPFPN 177 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A +++NP + + +LCA + + L L+ K+ ++ L V LATV Sbjct: 178 ANSIINPKKDNSYKEYDYLCATTLTYFFLDLLI------KKIKTKINISDYLIYVLLATV 231 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+PL LNR + L N L L + + I +LGY+IGP +NAGGR Sbjct: 232 CDVMPLRKLNRLIALNALKNFDITKNLPLSTLFDLNEKKNKININDLGYLIGPILNAGGR 291 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G+S + LL S++ Q ++ + L LN R+ +E+ +L ++ + + + V Sbjct: 292 LGKSQYATELLSSNNDQVIKDRSTYLIKLNNKRKEIENLLLN----EIDFKKIEKENKEV 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I+ + G++G++AARLK+ F +PS I+ + GS RS+ ++IG+++ ++ Sbjct: 348 IIYYNPNINEGLIGIIAARLKDYFNKPSIVITASNE-LLKGSARSVYNYNIGRIIKNLLD 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + I++ GGGH MAAG T+ + N ++ + + +F + ++ A N Sbjct: 407 KDIIINGGGHNMAAGFTLNKANLKDFENYILEDFLK--SNTVNNNIFSYESEVSPLAFNQ 464 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 D ++ P+G GN P F + K+ V+N H+ + +S+ ++++I+F Sbjct: 465 DFYDDIKKLEPFGTGNSVPTFMLRDLKIIKPIVLNNKHISVILKSKTGFSIKSISFNTIN 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T +GE LM + ++V G + N W K QL + D Sbjct: 525 TMIGEHLMSYKN-NINVIGQIGENIWNNKKTLQLTIRDL 562 >gi|325915489|ref|ZP_08177802.1| exonuclease RecJ [Xanthomonas vesicatoria ATCC 35937] gi|325538290|gb|EGD09973.1| exonuclease RecJ [Xanthomonas vesicatoria ATCC 35937] Length = 579 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 174/565 (30%), Positives = 272/565 (48%), Gaps = 24/565 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ + P + L+ P +L + D AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDTHGAQ---PRLGQLL-SPQLLHNSDVAAELLADAIARQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAVDGFPSKSLAGVGVIFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + LR DL LLDLVA+ TV D+VPL NRA V GL R +G Sbjct: 200 LALRSALRTRGAFADRSEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+S+D +A Sbjct: 260 IGLRALIDASGRDIARLSASDIGFALGPRLNAAGRLEDMALGIELLLSEDWSRAREIAAT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + +WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPIAACLFDAQWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL+++ Sbjct: 380 LHRPVIALAPAEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLMQKFGGHAMAAGLSID 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 HAALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRVAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + + + + Sbjct: 500 LFDGQ-FEVLQYRVLKERHLKLTLRCAGRPEPLSAIHFNGWHG-------SEPARMVRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVE 593 L + +RG QL V P Sbjct: 552 YRLVSDDYRGGTAVQLIVEHCEPAT 576 >gi|241758665|ref|ZP_04756779.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria flavescens SK114] gi|241321176|gb|EER57372.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria flavescens SK114] Length = 566 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 166/562 (29%), Positives = 260/562 (46%), Gaps = 28/562 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ R+V + L+ + L+P LT+C+ AA R+ AI EKI+I Sbjct: 22 GTDPLIARLCAARDV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAIERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L++TVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + + DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWE 564 >gi|282850798|ref|ZP_06260172.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri 224-1] gi|282557750|gb|EFB63338.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus gasseri 224-1] Length = 506 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 151/519 (29%), Positives = 267/519 (51%), Gaps = 24/519 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + N + + + + DI A++ R ++ DF + + DP ++ Sbjct: 2 KWQQR---QASNLDQELIEDYGLTDIQAKLFALRGINTAEKLDFWLNADENDLADPFLMH 58 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K+ RI QAI N EKI I+GDYD DG + ++MM L + + +IPDR DGYG Sbjct: 59 DMEKSINRINQAIDNGEKITIYGDYDADGITATSIMMDTLEILGADVHFFIPDRFKDGYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P+ S ++ + +G +LIITVD G T + ++YA G+DVI+ DHH + ++ +++ V+ Sbjct: 119 PSMSRYQEIVEDGTKLIITVDNGVTGVEEVKYAQEHGVDVILTDHHTFQDQKPASFSTVH 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 N C AGV + + + + + LLDL + T+ D+V + Sbjct: 179 CNYPGQKYPFDDYCGAGVAYTMCRALMQ-----------DAMPELLDLAMIGTIGDMVKV 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESN 315 G V +GL + + PGL+ALI++ ++ ITA ++G+ I P +NA GR+ +++ Sbjct: 228 TGEGHIIVKRGLDILNQTERPGLRALIKQAGLTMGQITATDVGFNIAPRLNAVGRLADAS 287 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L LL+SDD ++ E +A K++ LN R+ + + + E+ A+V + Q + +V+ Sbjct: 288 LAVELLLSDDEEQAEEIATKIEELNNERKELTAEVYEKCLAQVKEKGW--QHRNTLVLYS 345 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +H G++GL+A ++ EK +P+ ++ +E+G+ GSGRS GF++ + +++ L Sbjct: 346 PDFHEGVLGLVANKVVEKLHKPTLVLTKDENGELKGSGRSSNGFNLFDTLEP-MKDDFLD 404 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH A GL+++ + + V D LN V + Sbjct: 405 KFGGHDFACGLSLKADKL----EELRSRFEKSFKPNTDLEVKDFDFELNLREVTPDTLTE 460 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMT 532 + GP+G GNP PVF+ ++S+ + H++ T Sbjct: 461 INLVGPFGTGNPEPVFSISEPHIKSLFKMGKDKNHVKFT 499 >gi|229824066|ref|ZP_04450135.1| hypothetical protein GCWU000282_01370 [Catonella morbi ATCC 51271] gi|229786420|gb|EEP22534.1| hypothetical protein GCWU000282_01370 [Catonella morbi ATCC 51271] Length = 777 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 264/584 (45%), Gaps = 30/584 (5%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAI--PDIVARVLVNRNV-SIDYAKDFLNPSIRLLM 69 ++ + W + +A Q+ + D R+ + R + +++ K+ N + Sbjct: 3 LTHYEWQYRSLPDDWQDKVAEWQQAGLGYSDTFLRLCLARGLETLEEIKNATN-QMPQTF 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 D +L D ++A RI AI + E I+I+GDYD DG S ++ L Y+P+ Sbjct: 62 HDAFLLYDMERAVERIQAAIEDQEVILIYGDYDADGITSTLILYETLEMLGARVIYYVPN 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+VDGYGPN + + F+N+G QLI+T D G ++A+++A G+DVIV DHH+V++ Sbjct: 122 RLVDGYGPNLARYQDFVNQGVQLILTCDNGVAGFEAIKWAMQAGVDVIVTDHHEVQATLP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 AYA+V+P L AGV + + + L++L A+ T Sbjct: 182 SAYAVVHPRHPQGHYPFPDLSGAGVALKLATALLGEVP-----------TELVELAAIGT 230 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAG 308 V DVV L NR V+ GL + R GL+ ++E + + +G+ IGP +NA Sbjct: 231 VSDVVSLRDENRTIVLSGLQLMRDTMRIGLRLMLEEEQVDMENMTADTIGFTIGPRLNAI 290 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+G+ LL + D +E A +L L + ++ + +V + Sbjct: 291 GRLGDPTPALELLKTQDEEE----AQELLALINEKNQERKDLVAKIMDQVSQRLGQGPIP 346 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSF 427 +I+ W G+VG++A RL E + RP+ ++ ++G+ GSGRS E + Sbjct: 347 HIIIESDPSWPAGVVGIVAGRLSEHYQRPALIFQYQADEGQYKGSGRSTEAVHLFDW--L 404 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + L + GGHA AAG+TV + + Q A ID L Sbjct: 405 TDIKEHLAQFGGHAQAAGMTVAQDQWQEFVSALQAKAQVQTDIGTRKAPLTIDLSLKLGE 464 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545 V I ++ GP+G N PVFA K+ +R++ H ++ QD + L AI Sbjct: 465 VGTDFIQEVQLLGPFGMDNDKPVFAIEEAKINQMRLIGTNGQHAKLVL-GQDGQELNAIG 523 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F + G + GHL +N W+ QL + D Sbjct: 524 FDFADR----MRDRQVGDSLTAVGHLDLNKWQNRISPQLLLSDI 563 >gi|256826846|ref|YP_003150805.1| single-stranded-DNA-specific exonuclease RecJ [Cryptobacterium curtum DSM 15641] gi|256582989|gb|ACU94123.1| single-stranded-DNA-specific exonuclease RecJ [Cryptobacterium curtum DSM 15641] Length = 1134 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 141/580 (24%), Positives = 253/580 (43%), Gaps = 22/580 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 + + + + +P +A LV R +S A +FL PS+ +P + Sbjct: 21 QFYIHEADPAATEVLCKTLGLPRFIAATLVARGISSPQEAGEFLRPSLARDWGNPYCIPG 80 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 D+ + A+ + ++IM+FGD+D+DG +S A++ R L +IP R +GYG Sbjct: 81 MDEVVGGLEAAVRSGKRIMVFGDFDLDGISSTAVLTRGLRELGGEVVPFIPRRQDEGYGI 140 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + +E+ + + L++TVDCG + ++ N+G+DV + DHH+ + +P Sbjct: 141 TEAAIERLMKDEPDLLVTVDCGIACRNEVRLLKNRGVDVFITDHHEPADLVPEEVPVCDP 200 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D S L GV ++ + Q DL L T+ D++P+ Sbjct: 201 KIDPDCSESI-LAGVGVALKLIQALGARFGQ------PHLWREYTDLATLGTIADLMPMQ 253 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNL 316 NRA V G+ P + AL+ + P+++ +L + + P +NA GR+G++ L Sbjct: 254 QDNRALVADGVAHMNESPRPCIAALLHSAGVADKPVSSTSLSFSVIPRLNAAGRMGDAML 313 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL+ DD+ + +A L+ +N RR +E+ + E A + Q ++V G+ Sbjct: 314 ALNLLLEDDAHRAQDIAADLEAVNSQRRAIEAELAEIATLQAQEI---YQGQRALIVAGE 370 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G+ G++A+RL +G P+ + +E+G GSGRS+ ++ K V +L++ Sbjct: 371 GWHEGVKGIVASRLARSYGVPTILFAIDEEGIARGSGRSVGSVNLFKAVESC--SDMLIR 428 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A G+T+ + F + P ID +N + + ++ L Sbjct: 429 FGGHEAAVGVTLSAADLPAFTKRLCAFMDG-LDKNCFHPRIDIDACVNLDELTVENVEAL 487 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 E P+G GN P + N L R V H + T+ I F Sbjct: 488 EQLAPFGQGNRQPTYLAQNVMLTRSRAVGADKNHFSTVLTD-GAHTVSGIMFHCAYIDR- 545 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + ++ + V+ WRG + + + P + Sbjct: 546 ---LMHCDSVVNAGFEVQVDEWRGRRSVKAMLSSIYPAQP 582 >gi|93005550|ref|YP_579987.1| single-stranded-DNA-specific exonuclease RecJ [Psychrobacter cryohalolentis K5] gi|92393228|gb|ABE74503.1| exonuclease RecJ [Psychrobacter cryohalolentis K5] Length = 608 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 172/605 (28%), Positives = 264/605 (43%), Gaps = 51/605 (8%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 E + + +AR+ R + L + L+P L +A Sbjct: 14 DELPAALQPLAAQ---SLTLARLYAARGIMQPDE---LEIQLAGLLPA-EKLKGIIEAVD 66 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 + AI + ++I+I GD+D DGA S ALMMR L+ + +PDR GYG P ++E Sbjct: 67 LLDIAIDDGQRILIVGDFDCDGATSTALMMRALTAMGAKVDFLVPDRFKYGYGLTPEIVE 126 Query: 144 KFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 I Q+I+TVD G +S++ + A GI VI+ DHH E PA A+VNPN+LD Sbjct: 127 LGIKTYQPQMIVTVDNGISSHEGVARAQADGITVIITDHHLTTKETPPAEAVVNPNQLDC 186 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 L GV F VL + ++ R + LDLVAL T+ DV L NR Sbjct: 187 TFASKALVGVGVAFYVLGRLAKLRRDAG--KSTVQVSQYLDLVALGTIADVGVLDKNNRI 244 Query: 263 YVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V GL R R L L + + A++ G+++GP INA GR+ +G Sbjct: 245 LVHHGLAAIRQGRGSLGILALLEQAGRDPKKLQAQDFGFVLGPRINAAGRMDNMRIGIEC 304 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC------------------ 362 L++DD + LA +L+ LN+ RR +E M QA+ V Sbjct: 305 LLADDWGTAQRLAQELEQLNRTRRQVEGEMRTQADNIVQALAATNISIEADVEESDDIIV 364 Query: 363 -----DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE------DGKGIG 411 IV+ D WH G++G++A RLKE PS + + G Sbjct: 365 QNRLEKKSTNTRSIVLYQDDWHQGVIGIVAGRLKESHYLPSIVFAPANTERTGAEDAIKG 424 Query: 412 SGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 S RSI G I + ++ GGHAMAAGLT++R NF F + Sbjct: 425 SARSIAGVHIRDAIEQVAESHPDLISHFGGHAMAAGLTLKRGNFDAFVTAFNTVLA-QME 483 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529 + DG L A+ ++ + L + +G G P+F ++ + +V+ HL Sbjct: 484 DEVFAEQKFTDGALQANDFSLWFAEHLAESSIWGHGFAPPIFDG-VFEVLNFKVLKDQHL 542 Query: 530 QMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 +++ D + ++AI F + R +++H+ L +N W G + QL + D Sbjct: 543 KLSLRYPDVKYPIEAIQFNFDSSAW-----DYRAEKVHILFELDINEWNGKQSLQLMIKD 597 Query: 589 ASPVE 593 + V+ Sbjct: 598 LALVK 602 >gi|319637801|ref|ZP_07992567.1| RecJ protein [Neisseria mucosa C102] gi|317400956|gb|EFV81611.1| RecJ protein [Neisseria mucosa C102] Length = 566 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ R+V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GTDPLIARLCAARDV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ M L+ + +P+R GYG P L E +G L++TVD Sbjct: 78 VADYDADGATACAVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVALDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + + DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|313888454|ref|ZP_07822121.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845483|gb|EFR32877.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus harei ACS-146-V-Sch2b] Length = 596 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 167/600 (27%), Positives = 275/600 (45%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + +K I +++ ++L+NR ++ + ++FL PS+ L P++L Sbjct: 3 RWFIKNKSDPGIDY----KKLGINNVIYKILLNREINTEEDIREFLEPSLSNL-NSPILL 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D KA+ I+ + KI I GDYDVDG S ++ L N + IP R+ DGY Sbjct: 58 KDMVKASNIILSHLAKKNKIRIIGDYDVDGVTSTYILYEGLKTIGGNVSYDIPHRVEDGY 117 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N +L++K +G + IIT D G + DA+ YA + IDV+V DHH+V Sbjct: 118 GINKNLIDKANEDGVKCIITCDNGIAARDAVDYAMSLDIDVVVTDHHEVPKILKDGNEVE 177 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+++P + +C V F + L V L A Sbjct: 178 IIPEASAVIDPKQAACSYPFKEICGGVVAFK----LIEYLFLIKGVDKEEFYEKFLPYAA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSI 305 +ATVCDV+PL NR V +G+ + R + GL ALIE +I I +LG+++GP+I Sbjct: 234 IATVCDVMPLTNENRVIVSEGIKLLRESKDLGLNALIEAADIKKDDIDVYHLGFILGPTI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ + L + D A +L LN R+ + S E + K+ + + Sbjct: 294 NSSGRLESAKEALELFLEKDYSIALEKAKELRDLNYERQKLTSDAFEVIDDKIQKEGL-L 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V++V + + I+G++A ++KEK+ RPS +S + GSGRSIE +++ Sbjct: 353 DKHKVLIVYEEGLNESILGIVAGKIKEKYYRPSVVLS-DSKDLIKGSGRSIEEYNM--FQ 409 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 F+ + L GGH MA GL + N + + IDG L Sbjct: 410 EFSKSKEYLRSFGGHKMACGLALPLENLDDFIRDVDQ--KESLTRNDLIRKIYIDGNLEL 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +++ L+ +E+ P+G GN P F N +++S+ ++ L+MT SQD+ Sbjct: 468 KYISMKLVQDIEALAPFGNGNSAPKFGAKNLQIKSLNILGKNKNFLKMTL-SQDNINYTG 526 Query: 544 IAFRVYGTPLGEF-----------LMQSRGKR--MHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F L + L+ R + + +L +N + G+ QL++ Sbjct: 527 ILFEDSKVFLNKLASSYGREEVMGLLNGRPSNIFIDIVFNLDLNKFNGNVTIQLKIKSYR 586 >gi|239814215|ref|YP_002943125.1| single-stranded-DNA-specific exonuclease RecJ [Variovorax paradoxus S110] gi|239800792|gb|ACS17859.1| single-stranded-DNA-specific exonuclease RecJ [Variovorax paradoxus S110] Length = 573 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 176/588 (29%), Positives = 269/588 (45%), Gaps = 33/588 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + A+ ++ + ++AR+ R V AKD L+ + L+P P L Sbjct: 2 KIIAREIPPRTVWAL-EQAGVHPLLARLFAARGV---LAKDELDDGLARLLP-PDTLHGT 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 +AA + A+ +++ I DYD DGA + A+ +R L N + +PDR+VDGYG Sbjct: 57 REAAVLLADAMAQDKRLCIVADYDCDGATACAVAVRGLRLLGAKNVSYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P + E+ + GA ++ITVD G S + + A +G+ V+V DHH E A LVNP Sbjct: 117 TPPIAERVADSGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPAADVLVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255 N+ + GV+F VL+ + LR L LL LVAL TV DVV Sbjct: 177 NQPGCSFESKSIAGVGVMFYVLLALRSELRARGVFSAAAQPKLDVLLPLVALGTVADVVK 236 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R P A ++ T + G+ +GP INA GR+ + Sbjct: 237 LDANNRRLVAQGLRRIRAGALPAGIAALFKAAGRNAAVATTFDFGFALGPRINAAGRLAD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-----A 368 LG L++DD+ + LA LD +N+ RR +E M +QA + Sbjct: 297 MTLGIECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFGATADGSEAPP 356 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKM 424 + I V +H G+VG++A+R+K++F RP+F + + + GSGRSI GF + Sbjct: 357 AAISVFDADFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDA 416 Query: 425 VSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + G+L++ GGHAMAAG TV R F + AH + A T + DG Sbjct: 417 LDLVAKRHPGVLLRFGGHAMAAGCTVAREKFEVFERALAEVAHEWLAASALTRQIETDGP 476 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + + I L+D L +G G P F ++ S R+V HL + Q + + Sbjct: 477 IAREYMRIDLVDTLHR-EVWGQGFAPPTF-SEEVEVVSQRLVGEKHLALKLRHQ-GQPVD 533 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F R+ + L + W+G +R + V A Sbjct: 534 GIWFGHTE---------PLPARVKLAFRLDADEWQGVRRVRFLVEGAE 572 >gi|241662658|ref|YP_002981018.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii 12D] gi|240864685|gb|ACS62346.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii 12D] Length = 564 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 171/561 (30%), Positives = 264/561 (47%), Gaps = 23/561 (4%) Query: 37 HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 H I ++AR+L R V+ L+ + L+P P L D AAR + AI ++++ Sbjct: 20 HGIHPVLARILAARGVARPDE---LSTELTDLLP-PAQLKGIDDAARYLADAIAAKKRLL 75 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I DYD DGA + A+ +R L + +P+R GYG +P ++ E +++TV Sbjct: 76 IIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + A GIDV+V DHH ++ A +VNPN+ +L GV+F Sbjct: 136 DNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGFPSKNLAGVGVMF 195 Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR+ L +LLDLVAL TV DVV L NR V +GL R Sbjct: 196 YVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANNRLLVAQGLKRMRAG 255 Query: 274 QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG+ AL + + +LG+ +GP +NA GR+ + +LG L++DD + Sbjct: 256 RMCPGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSI 315 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLK 391 A +LD +N+ RR +E+ M ++A A + + D I V + WH G++G++A+R+K Sbjct: 316 AAELDGMNRERREIEAGMQQEALAILDSMNTIDGAGRHTIAVYNETWHQGVIGIVASRIK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVE 449 +KF RP F + +DG GSGRSI GF + + + G++VK GGHAMAAGLT+ Sbjct: 376 DKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRSPGLIVKFGGHAMAAGLTLR 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F F+ + + + V + DG + +++LE+ +G G P P Sbjct: 436 EDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVELLET-QVWGQGFPAP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F L V + + AI F G +V Sbjct: 495 SFCGEFDVLSQA--VLKDKHLKLKLGRGKQHFDAIWFNHAE---------PLGASAYVAY 543 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L N + G R Q+ + A Sbjct: 544 RLDNNTFNGITRVQMVIEHAQ 564 >gi|255348817|ref|ZP_05380824.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 70] gi|255503357|ref|ZP_05381747.1| single-stranded-DNA-specific exonuclease [Chlamydia trachomatis 70s] Length = 584 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 162/582 (27%), Positives = 271/582 (46%), Gaps = 13/582 (2%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 S G +W E + I ++ + +A+VL++R SI +DFL+P + L Sbjct: 7 SSLGQKWDYPKHNEVFLK--KILKEFHLHPAIAQVLISRGFQSIQEIRDFLHPQLSSLHS 64 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D +KA R++QA N+E +MI+GD DVDG V L++ FL V + Sbjct: 65 T-SLFLDMEKAVVRLLQAKANNEHVMIYGDGDVDGITGVTLIVEFLQILGVKTSYCCSGT 123 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +G SL+ + + +G L+ITVDCG T+ +Q QGIDVIV DHH + Sbjct: 124 LFKQHGETASLISQMLQDGISLLITVDCGITAGKEVQAINKQGIDVIVTDHHMPTGKLPH 183 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQDNKVPLNFDLLSLLDLVALAT 249 A++NP + L GV F ++ Y L +QD DLL LDLV+L T Sbjct: 184 CIAMLNPKLDKNPYPNKELTGVGVAFKLVCATYEELIQQDASWKDKIDLLRFLDLVSLGT 243 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAG 308 + DV L G NR V G+ + GLK L + +++ NLG I P +N+ Sbjct: 244 IADVGRLSGENRILVSYGIKEIAKGKRLGLKKLCSLSGVDKSEVSSTNLGIRITPKLNSL 303 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +S+ G +LL+S D + + + +L V+NQ R+ +E+ +L E ++L + Sbjct: 304 GRLADSSQGVKLLLSQDPKNIGTIVSELSVVNQERQRIEAEVLRDVE-RILAANPKLTAQ 362 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S IV+ WH ++ +++ARL + +P I+ ++ G G GS R+I F + ++ Sbjct: 363 SAIVLASPNWHSRVIPIISARLARTYNKPVAIIALQD-GIGKGSLRTIGSFPLLGVLRKC 421 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E + GGH AAGL ++ F + + +D ++ S + Sbjct: 422 --ESFFLSYGGHDFAAGLMIKEDQVEGFRKKFIHLVSSSLRKDDAMRTLSLDVGMDFSRI 479 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 N LI +E P+G GN +PVF +++ +++ H+++ + L+ AF Sbjct: 480 NRDLIASMELLEPFGKGNVSPVFYTKAIQVRYPKLLAGNHVKLYL-NSGERNLEGTAFGQ 538 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + + L + +L + D Sbjct: 539 GDKI--SLLKANWNIPLDIAYTLRIMRRSARGAIRLLIQDFR 578 >gi|296315339|ref|ZP_06865280.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria polysaccharea ATCC 43768] gi|296837716|gb|EFH21654.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria polysaccharea ATCC 43768] Length = 566 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 167/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAARRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ + +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLTALRAELRRRHYFSDGIKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNDFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPNLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|160947571|ref|ZP_02094738.1| hypothetical protein PEPMIC_01506 [Parvimonas micra ATCC 33270] gi|158446705|gb|EDP23700.1| hypothetical protein PEPMIC_01506 [Parvimonas micra ATCC 33270] Length = 581 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 167/596 (28%), Positives = 279/596 (46%), Gaps = 37/596 (6%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +W + I ++L NR + ++FL P+ + L +P ++ Sbjct: 2 KKWFIKSDNGLTKENFKNNSEF--SYITCQLLANRKIDYKNVRNFLYPNYKYLH-NPFLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D A +V AI N+ I I GDYD DG +S ++M+ + + N + IP RI DGY Sbjct: 59 KDLDTAIEILVDAIDNNLHIQIVGDYDQDGNSSTVVLMKGIGFFTDNISFSIPHRIEDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV------KSEEI 189 G + +++ LIIT D G ++++ +Y + I +I+ DHHQV Sbjct: 119 GISKGIVDNAKKNNVDLIITCDNGISAFEVAEYCNSMNIQMIITDHHQVCFDDKGNQILP 178 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A A++NP+R+D LC AGV F ++ ++ L D L+ LL V++ T Sbjct: 179 KAKAIINPHRIDCEYPFKELCGAGVAFKLMQALFDELGGDENY-----LIDLLQFVSMGT 233 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309 VCDVV L+ NR +V KGL + N G+ L + N IT +LG+ +GP INA G Sbjct: 234 VCDVVDLVDENRFFVKKGLEILNSSKNIGINKL-KTENEIGKITTTSLGFKLGPCINAAG 292 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ +++G L + +D + A KL LN+ R+ + + + K+ + Sbjct: 293 RLESASIGVELFLEEDENLADNYAKKLIELNEKRKNLTNEAYSRVNLKIKEN--EYFNDD 350 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA 428 +IV+ + H I G++A R+K+ + +P+ S +E+G GS RSIEG+DI + Sbjct: 351 IIVIYDNEIHESIAGIVAGRIKDHYYKPTLVFSNAKEEGILKGSARSIEGYDI--ISKLR 408 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + K GGHAMAAG ++++ N L + K + ++ KID L+ + Sbjct: 409 DFSNLFEKLGGHAMAAGFSIKKENLDTLRNELNKNSELVL--ENFIEKIKIDCSLDFKLL 466 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546 N ++D L+ PYG NP P+F N +++ I ++ +++ SQDS I F Sbjct: 467 NYNIVDELKLLEPYGKANPEPLFGTKNVEIKCISIIGKNKNVIKLVL-SQDSIEFSGIIF 525 Query: 547 RVYGTPLGEFLM------------QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + K + + +N + +K QL + D Sbjct: 526 TNFDKYIEYLNEKFKTNDIISKQDNIKNKFIDILYTPVINEYMNTKSIQLLIKDIR 581 >gi|239907925|ref|YP_002954666.1| single-stranded-DNA-specific exonuclease [Desulfovibrio magneticus RS-1] gi|239797791|dbj|BAH76780.1| single-stranded-DNA-specific exonuclease [Desulfovibrio magneticus RS-1] Length = 566 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 166/582 (28%), Positives = 265/582 (45%), Gaps = 23/582 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 +W+ R A+ + +A +L R A D +L+P +R LM P Sbjct: 3 KKWIFPAPLADAGRIAAVADGLGVSQPIAALLATRGYDTAEAMDRYLSPGLRHLMR-PAD 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + A IV+A+ + + I+GDYDVDG AL++ F ++ +P R +G Sbjct: 62 IPGLETAVGVIVRAVAAGQTLAIWGDYDVDGITGTALLLDFFRERGLSPLYRLPVRAEEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E+ GA+++ITVDCG T+ + A G+ V+V DHH E PA A+ Sbjct: 122 YGLNIGGIEELAAAGAEVLITVDCGITAVAEVARAKELGLSVVVTDHHLPGEELPPADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P D L GV F + + R L D D+ LLDLVAL T+ DVV Sbjct: 182 VDPKLGDGPGN--DLAGVGVAFFLAAALSRALPGD-----PGDVRRLLDLVALGTLADVV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIG 312 PL G NR G+++ PG+ AL E + + A + + + P INA GR+G Sbjct: 235 PLGGQNRILAKNGMLLLAEARRPGVYALKEVAGQNPKATLGASQITFGLAPRINAAGRMG 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL++ D + LA LD N RR E A+ +A + + + Sbjct: 295 RPDAALELLLAPDLETARPLAADLDAENTRRRAEEDAIQAEALRQA----EAAPDHFGLT 350 Query: 373 VEGDRWHPGIVGLLAARLKE-KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + WH G++G++A+R+ E ++ + G+ GSGRSI D+ + Sbjct: 351 LFAPHWHQGVIGIVASRVAEARYRPTLILTADPAKGRLKGSGRSIPECDLHGL--LCDIA 408 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 L+ GGH AAG +++ G + F + A + + TP ++DG L ++ Sbjct: 409 DSLLAFGGHKQAAGFSIDPDKLGEVSRRFNEAAAAALGHAVPTPSLRLDGELAFGEISST 468 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYG 550 L+ L P+G GNP P FA P +Q+ R H+ +T T + A+R+ Sbjct: 469 LVRELALLEPFGCGNPEPAFASPPVTVQARRAFGENHVALTLRDPAAGVTFKGKAWRMA- 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++ G+ + V + Y+ G +LR+ D P Sbjct: 528 ---AQIGQETAGRTVRVAYSPKITYFSGIPEIELRLRDLGPA 566 >gi|307729221|ref|YP_003906445.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. CCGE1003] gi|307583756|gb|ADN57154.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. CCGE1003] Length = 568 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 183/577 (31%), Positives = 270/577 (46%), Gaps = 33/577 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A A+ +H + ++AR+ R V D + + L+P P +L CD AA + Sbjct: 11 PADAEALV-RHGLHPVLARLYAARGVCMPDEIET----GLARLVP-PAMLKGCDDAALLL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM--- 142 AI ++++ DYD DGA + A+ +R L + +P+R GYG P ++ Sbjct: 65 ADAIQQRRRMLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVALA 124 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + + L+ITVD G S D + A GIDV+V DHH + A A+VNPN+ Sbjct: 125 ARSASGKPDLLITVDNGIASVDGVAAANALGIDVLVTDHHLPGDQLPAARAIVNPNQPGC 184 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGL 259 + GV+F VL+ + LR+ L LLDLVAL TV DVV L G Sbjct: 185 EFPSKCIAGVGVMFYVLLALRAQLRRRGAFGDSFPEPRLDGLLDLVALGTVADVVKLDGN 244 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLG 317 NR V +GL R+ A + R A +LG+ +GP +NA GR+ + +LG Sbjct: 245 NRVLVAQGLQRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSDMSLG 304 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 L +DD LA +LD +N+ RR +E+ M +QA + + D A+ I + Sbjct: 305 IECLTTDDVGRAWELAQQLDTMNRERREIEAGMQQQALDDLSS--VDPDGATTITLFNPA 362 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGI 433 WH G++G++A RLKEKF RP+F + +D GSGRSI GF + + E G+ Sbjct: 363 WHQGVIGIVAGRLKEKFHRPAFTFAPADDSGQLVKGSGRSIAGFHLRDALDLISKREPGL 422 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 +VK GGHAMAAGLT+ + R F+ + + DG L + + Sbjct: 423 IVKFGGHAMAAGLTLATADVPRFTAAFEAVGREWLSDDALARTVETDGELEDAYFTPQFV 482 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 +ML+ A +G G P PVF+ + S +V HL++ + + AI F T Sbjct: 483 EMLD-AAVWGQGFPAPVFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHTDT-- 537 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 538 -------LPARTMVAYRLASDTWNGVSRVQLIVEHAA 567 >gi|121595721|ref|YP_987617.1| single-stranded-DNA-specific exonuclease RecJ [Acidovorax sp. JS42] gi|120607801|gb|ABM43541.1| exonuclease RecJ [Acidovorax sp. JS42] Length = 574 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 182/578 (31%), Positives = 272/578 (47%), Gaps = 30/578 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 R + ++ + ++AR+ R + AK+ L+ ++ L+P P L +AA + Sbjct: 9 PPRVVWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLMGVQQAAALLA 64 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145 AI +++I DYD DGA + A+ +R L + +PDR+VDGYG S+ ++ Sbjct: 65 DAISQDRRLLIVADYDCDGATACAVGVRGLRLLGARHVQYLVPDRVVDGYGLTASIAQRV 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 GA ++ITVD G S + + A G+ V++ DHH E A A+VNPN+ Sbjct: 125 HERGADVLITVDNGIASIEGVARAKALGLTVLITDHHLPGPELPAADAIVNPNQPGCGFE 184 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + GV+F VL+ + LR L LL LVAL TV DVV L NR Sbjct: 185 SKSIAGVGVMFYVLMALRAELRARGVFDKATQPKLEPLLPLVALGTVADVVRLDNNNRRL 244 Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R Q PG++AL + +P T + G+ +GP INA GR+ + LG L Sbjct: 245 VAQGLKRIRAGQMQPGIQALFDAAGRKAPAATTFDFGFALGPRINAAGRLADMTLGIECL 304 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHP 380 ++DD LA +LD +N+ RR +E M EQA + D+ + I V +H Sbjct: 305 LTDDPARAADLARQLDAINRERRELEGGMREQALLLAESLFDEGQEPPPAISVFDPDFHE 364 Query: 381 GIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGIL 434 G+VG++A+RLK+K RP+F + ++ + GSGRSI GF + + G++ Sbjct: 365 GVVGIVASRLKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVAKRHPGVI 424 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 +K GGHAMAAG TV +F F + A + A T + DG L L+D Sbjct: 425 LKFGGHAMAAGCTVAEEHFDLFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAELVD 484 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTP 552 L +G G P F ++ S R+V HL + Q + + AI F Sbjct: 485 TLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSIKLLHQ-GQPVDAIWFGHTD-- 539 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +R + L VN WRG +R Q V Sbjct: 540 -------PLPERALLAFRLDVNEWRGERRVQFLVEGLE 570 >gi|281412682|ref|YP_003346761.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga naphthophila RKU-10] gi|281373785|gb|ADA67347.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga naphthophila RKU-10] Length = 955 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 156/580 (26%), Positives = 271/580 (46%), Gaps = 26/580 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W Q I+Q + +I +R+LVNR + + + FL + +P + Sbjct: 2 KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFINESH-QHNPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +KA +++A +E ++I GDYDVDG S ++ FL ++YIP RI +G Sbjct: 59 FNDMEKAVETLLEARSRNELVLIHGDYDVDGITSTVILKEFLEENGWRVDVYIPHRIEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + F ++TVDCG T+ D++ A G+ VI+ DHH+V + PA A+ Sbjct: 119 YGIQLENILTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIITDHHEVNGDLPPADAI 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + L GV + ++ I + L+LVAL TV D+V Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQAISEAIN-------YPHPERFLELVALGTVADMV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L+ NR +V KG+ + GLK L+ER+ + + +T+ ++ Y I P +NA GR+G + Sbjct: 232 SLLDENRYFVKKGIELLSNTKRVGLKRLLERLGLKN-LTSHDISYKIAPRLNAAGRMGSA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N LLI +D + + + +L LN RR E A+ ++A + + +D+ + VIVV Sbjct: 291 NDAFNLLIMNDPAKADGVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++AA+L ++ +P +S +E GS RS G+DI + + + I Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH+ A G +++R ++ + + +D + ++ I+ Sbjct: 407 EEIGGHSSAVGFSLKRDQLESFREYIRN-----ISLEGREEKVIVDAEVRMEDIDDRFIE 461 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553 ++ P+G GNP PV F + ++ I + ++ + L+ + + Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLIEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPV 592 + R V +L G+ L LD PV Sbjct: 522 SLSTLPVTPTRGDVVVNLRP---MGNGVSYYLISLDVKPV 558 >gi|167746206|ref|ZP_02418333.1| hypothetical protein ANACAC_00911 [Anaerostipes caccae DSM 14662] gi|167654199|gb|EDR98328.1| hypothetical protein ANACAC_00911 [Anaerostipes caccae DSM 14662] Length = 574 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 162/585 (27%), Positives = 281/585 (48%), Gaps = 30/585 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 +W + R I +K I ++AR++ NR+++ + + +L+ ++ + DP ++ Sbjct: 3 KWFISKKKADFVR---IGEKFGIDPVIARLIRNRDITGEEEIRRYLSGTLSDI-SDPFMM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D ++A R + QA+ KI I DYDVDG S ++ + LS + IPDRI DGY Sbjct: 59 KDAEEACRLLHQAVRGGTKIRIISDYDVDGVISNYILWKSLSDLGGIVDFTIPDRIQDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP----- 190 G N + +G LIIT D G ++D ++ A + G++VIV DHH+V + Sbjct: 119 GMNSEMAVNAKEDGVGLIITCDNGIAAFDPVKKAKDLGMEVIVTDHHEVPYQMEEGKKRE 178 Query: 191 ----AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+VNP + LC AGV F ++ +Y++ +++ DL LL +A Sbjct: 179 RLPLADAVVNPKQESCAYPYKQLCGAGVAFQLMRALYQMEGRED-----KDLEPLLCFLA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 +ATVCDVV L NR +V +GL N GL+AL+ N +P+ + +LG++IGP I Sbjct: 234 IATVCDVVDLTEENRIFVREGLKRIDITENTGLRALLRAHNLEEAPVNSYHLGFVIGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + RL + D E A +L LN R+ M + +++A ++ Sbjct: 294 NASGRLESAEKVLRLFLEKDMVTAEETAQELKELNDQRKGMTNEGVKEALDQIEQNGYG- 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+V+ H I G++A R+K+K RP F ++ +G GSGRSIE + + + + Sbjct: 353 -EDKVLVIYLPDCHESIAGIIAGRIKDKVHRPVFVLTKGREGI-KGSGRSIENYHMFEAM 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + + GGHAMAAG ++ + + + ID + Sbjct: 411 NGV--RDVFSRFGGHAMAAGCSLSDESKVEEFRRRINGCCD-LKEDDFIKKVSIDVDMPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 ++ L+ + P+G N P+FA ++ I+V ++++ S + Sbjct: 468 DYISAELVRQMAVLEPFGKENKRPLFAHRKLFIERIQVFGDNRNVIRLSLLSDRGTRMTG 527 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 + F + M + + T + +N +RG++ Q+R+ Sbjct: 528 MIF--EEEDIFREKMGEGKQYITCTYYPDINVYRGNESLQIRIQH 570 >gi|169335840|ref|ZP_02863033.1| hypothetical protein ANASTE_02266 [Anaerofustis stercorihominis DSM 17244] gi|169258578|gb|EDS72544.1| hypothetical protein ANASTE_02266 [Anaerofustis stercorihominis DSM 17244] Length = 793 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 167/576 (28%), Positives = 279/576 (48%), Gaps = 21/576 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 + +T++ I + A +L + S + +LNP+I L DP + D Sbjct: 8 QKTSDNINYDFIDNLTKQFDISYLSALLLSIKGFSAFGEVETYLNPNISDLY-DPFLFKD 66 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 K R+ + I N EK++IF DYD DG S ++ + LS VN + IP+R +GYG Sbjct: 67 MKKVMERLKEVIRNREKVVIFSDYDCDGVTSSIILYKVLSFMKVNTKIIIPNRFTNGYGL 126 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + ME I+E L+IT D G TS + + + GIDVI+ DHH AYA++NP Sbjct: 127 SDESMEMIIDEEPSLVITTDNGITSVEETEILKDSGIDVIITDHHTPPEVLPEAYAIINP 186 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D LC AGV F + + L+FD+ +L + T+ D+V L Sbjct: 187 KVEGDNYPFSELCGAGVAFKIACAAVK------FFELDFDISQILVFAMIGTIADIVSLK 240 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316 NR GL + R N GL ALI++ + + + N+G+ IGP INA GR+ ++ Sbjct: 241 SENRTIASLGLDLIRNTNNKGLNALIKKSDLDKNKLNCGNIGFQIGPRINAAGRLDDAKK 300 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 RL +S+D +E+++L+ +L N R+ +E ++ +++E + + D ++ + ++ V G+ Sbjct: 301 AVRLFLSEDEKEVDILSHELCEYNDQRKDIEESIFKKSEEYI-KENDLLETSLILYVYGE 359 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 ++ G++G+ A+++ +K+ RP +S EDG S RSI GFDI + K Sbjct: 360 DFNEGVMGVAASKICDKYNRPVVIMSDSEDGFIKASCRSITGFDI--FKCLDNSRELFSK 417 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH+ AAG ++ER N RL + ++A + D S +N+ L Sbjct: 418 FGGHSAAAGFSIERENLDRLIEETNEYARKRKIENLFYKRVYYDTPAIPSNLNVKTSLEL 477 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLG 554 E P+G GN + + KL ++R + HL+ + + AI F + G Sbjct: 478 EKFAPFGIGNSRSILCLRDVKLTNVRAIGKDGTHLKFSVLY-NGNYYDAIGFSM-----G 531 Query: 555 EFLMQSR-GKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +L + K + + VN ++G ++ Q + D Sbjct: 532 HYLREYDFTKSFDIVFTMSVNSYKGREKLQFEIKDM 567 >gi|170733470|ref|YP_001765417.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia cenocepacia MC0-3] gi|169816712|gb|ACA91295.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia cenocepacia MC0-3] Length = 565 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 185/581 (31%), Positives = 272/581 (46%), Gaps = 28/581 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ +H + ++AR+ +R V + + ++ L+P P L C Sbjct: 3 RIVTRPVAPADAEALA-RHGLHPVLARLYASRGV---QSPVDIETALARLVP-PTELKGC 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI + ++++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 58 ADAAALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLT 117 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 P ++E L+ITVD G S ++ A +GIDV+V DHH A A+VNPN Sbjct: 118 PEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPN 177 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVP 255 + HL GV+F VL+ + LR+ L LLDLVAL TV DVV Sbjct: 178 QPGCAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVR 237 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGE 313 L G NR V +GL R A + R TA +LG+ +GP +NA GR+ + Sbjct: 238 LDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSD 297 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + D A I + Sbjct: 298 MSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLAD--VDPADACTITL 355 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--V 429 WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 356 FNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKR 415 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E ++V GGHAMAAGLT++ N R F+ A + V + DG L + Sbjct: 416 EPDLIVAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALAGVIETDGELEDAYFT 475 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +L+ +G G P P+F+ + S +V HL++ ++ + AI F Sbjct: 476 PQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL-ARGRQRFNAIWFNHT 532 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L V L + W G R QL V A+ Sbjct: 533 EPLPASAL---------VAYRLVADTWNGVTRVQLIVEHAA 564 >gi|187928051|ref|YP_001898538.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii 12J] gi|187724941|gb|ACD26106.1| single-stranded-DNA-specific exonuclease RecJ [Ralstonia pickettii 12J] Length = 564 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 171/561 (30%), Positives = 263/561 (46%), Gaps = 23/561 (4%) Query: 37 HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 H I ++AR+L R V+ L+ + L+P P L D AAR + AI ++++ Sbjct: 20 HGIHPVLARILAARGVARPDE---LSTELTDLLP-PAQLKGIDDAARYLGDAIAAGKRML 75 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I DYD DGA + A+ +R L + +P+R GYG +P ++ E +++TV Sbjct: 76 IIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + A GIDV+V DHH ++ A +VNPN+ +L GV+F Sbjct: 136 DNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCDFPSKNLAGVGVMF 195 Query: 217 LVLVLIYRILRQDNKVPL--NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR+ L +LLDLVAL TV DVV L NR V +GL R Sbjct: 196 YVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANNRLLVAQGLRRMRAG 255 Query: 274 QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PG+ AL + + +LG+ +GP +NA GR+ + +LG L++DD + Sbjct: 256 RMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSI 315 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQC-DDIQQASVIVVEGDRWHPGIVGLLAARLK 391 A +LD +N+ RR +E+ M ++A A + + D I V + WH G++G++A+R+K Sbjct: 316 AAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIK 375 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 +KF RP F + +DG GSGRSI GF + + G++VK GGHAMAAGLT+ Sbjct: 376 DKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVKFGGHAMAAGLTLR 435 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 F F+ + + + V + DG + +++LE+ +G G P P Sbjct: 436 EDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVELLET-QVWGQGFPAP 494 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F L V + + AI F G +V Sbjct: 495 SFCGEFDVLSQA--VLKDKHLKLKLGRGKQHFDAIWFNHAE---------PLGASAYVAY 543 Query: 570 HLCVNYWRGSKRCQLRVLDAS 590 L N + G R Q+ + A Sbjct: 544 RLDNNTFNGITRVQMVIEHAQ 564 >gi|261400163|ref|ZP_05986288.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria lactamica ATCC 23970] gi|269210161|gb|EEZ76616.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria lactamica ATCC 23970] Length = 566 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AARR+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QTLTNCEAAARRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E + +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAVEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGMKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRLG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLPARDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|255020527|ref|ZP_05292591.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus caldus ATCC 51756] gi|254970047|gb|EET27545.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus caldus ATCC 51756] Length = 577 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 177/583 (30%), Positives = 261/583 (44%), Gaps = 26/583 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP---DPL 73 RW LA ++ A+ ++AR+ R V L + L P D Sbjct: 3 RWQQRPL--LAPEILAEAKRVALDPVLARLYAARAVRE---TRQLRLDVEQLSPGEGDQG 57 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIV 132 +L AA + A+ + I GDYD DGA + AL+ LS C A +PDR Sbjct: 58 LL-GLGAAAELLADAVRQQRVVCIVGDYDCDGATATALLHEALSLCGARALRYVVPDRFR 116 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 GYG P L+ + ++++TVD G TS D + A + + VI+ DHH + A Sbjct: 117 WGYGLTPELVAQLPA-DTEIVVTVDNGITSVDGVAAAKARNLQVIITDHHLPGAVLPAAD 175 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-PLNFDLLSLLDLVALATVC 251 A+VNP + V F + + R L + L DLVAL TV Sbjct: 176 AIVNPRQPGCPFPWKSSSGVAVAFYLAAAVRRRLLDRGYLGAGAPHFGQLWDLVALGTVA 235 Query: 252 DVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGG 309 DVV L NR V +GL R + PGL AL+E + +TA LG+ + P INA G Sbjct: 236 DVVALEHNNRILVQQGLKRLRSGRARPGLAALLECAGVEPAAVTAATLGFTLAPRINAAG 295 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + LG RLL+S D E LA LD LN+ RR +E+ M E A +++ D Sbjct: 296 RLEDMGLGIRLLLSQDRAEAAELARTLDELNRQRRAIETQMSE-AAQQIVDDLPDCGHNL 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK--MVSF 427 + V WH G++G++A RL+E++ RP+ A + DG GSGRSI G + Sbjct: 355 GLCVFQPEWHAGVIGIVAGRLRERYHRPAIAFAPVGDGFLQGSGRSIAGLHLRDSLADCV 414 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A +L + GGHA AAGL + R + + + DG L +S+ Sbjct: 415 ARAPHLLERFGGHAAAAGLRLRRAHLDEFVALWNTVLAERLTTEDLEESVFHDGPLESSS 474 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 +++ L LE+AGP+G G P P+F ++ + + H ++ + +AI FR Sbjct: 475 LDLELARRLEAAGPWGNGFPEPLFWGR-FRICERKALPGGHWRLHLDDGAGRRFEAIRFR 533 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 P G + VN + G++R QLR+ Sbjct: 534 SPELP--------PGPWVEALYVPEVNRYAGTERLQLRLHALR 568 >gi|325679306|ref|ZP_08158891.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus 8] gi|324108903|gb|EGC03134.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus 8] Length = 699 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 161/577 (27%), Positives = 271/577 (46%), Gaps = 26/577 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW G+ ++ QK + + VL +R + D +F + DP + Sbjct: 24 RWRI--GKADSSKVAEFDQKTDLNRLTLEVLSSRGYNDLDSIVEFFT---EQELEDPFAI 78 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA I A+ E I I+GDYD DG S +++ +L N YIP+R DGY Sbjct: 79 KDMDKAVETINAAVDAYELICIYGDYDCDGVTSTSILFSYLESTGANVMYYIPER-DDGY 137 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +E+ +G +LI+TVD G ++ + + + ++V DHHQ E A A+V Sbjct: 138 GLNVKAVEELAEKGVKLIVTVDNGISAINEAERIYELDMKLVVTDHHQPGEELPKAEAVV 197 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P++ D S LC AGV + + + + DL A+ TV DVVP Sbjct: 198 DPHQTDCPSKFKDLCGAGVALKLCAAL-------DGGNYEAVIEQYSDLCAIGTVADVVP 250 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 L G NR V G GL ++E++NI I ++++G+ IGP INA GR G Sbjct: 251 LNGENRTLVKTGFRYLPNTEIIGLDMMLEKLNIDRGHIVSDHVGFRIGPVINASGRFGSP 310 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + L+S+D ++ E + LN R+ E +L+ + + ++ VIV+ Sbjct: 311 ITAVKALLSEDDEDAESYVDTMITLNNMRKTSEQEILKDIREFIDSDPTVLEHR-VIVLA 369 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G WH GI+G++A+++++K+G+P+ I+ E +G+ GS RS++G ++ V++ + +L Sbjct: 370 GKGWHHGIIGIVASKIQDKYGKPTIIITDEGNGEARGSARSVKGLNMFLCVTYC--KDLL 427 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 K GGH AAG ++ + +++ + D VL + +++ ++ Sbjct: 428 TKFGGHECAAGFSLRSEDIEAFRQKVYEYSATLEKPA--VRTLYADKVLMPADISVDMVK 485 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPL 553 L P G GNP P+FA K+ I + H + TF QA+ F T Sbjct: 486 GLNVLEPLGEGNPRPLFAILGAKVTDIVGLKENAHTKFTFVY-GGLRAQALMFGHDPTK- 543 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L ++G + + L +N + + ++V D Sbjct: 544 ---LCFTKGDNVDMLVQLEINSFNNKESVSIKVEDIR 577 >gi|325137771|gb|EGC60346.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis ES14902] Length = 566 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTTFEEAVREMVCEDDLSQTFITDGSLPACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + D E +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQKDDCE-FEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|153854674|ref|ZP_01995924.1| hypothetical protein DORLON_01922 [Dorea longicatena DSM 13814] gi|149752778|gb|EDM62709.1| hypothetical protein DORLON_01922 [Dorea longicatena DSM 13814] Length = 586 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 170/600 (28%), Positives = 296/600 (49%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 RWV L AI +K+ I +A ++ NR+ + + + +LN +I L D +++ Sbjct: 3 RWVLLRKGADF---EAIGKKYQISPRLACLIRNRDVIGEEAIERYLNGTISDLY-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I +KI + GDYD+DG + +++ L + IPDRI DGY Sbjct: 59 KDADKAIDILKEKIAEEKKIRVIGDYDIDGVNATYILLEGLERLGAYVDSDIPDRIGDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N L+++ + G IIT D G + + + Y G+ +IV DHH++ +E Sbjct: 119 GLNRHLIDRAYDAGIDTIITCDNGIAAANEIAYGKELGMTIIVTDHHEIPFDEIDGEKIY 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+++P + D + LC A V + ++ ++ + +D+ DL L++ VA Sbjct: 179 RLPPADAVIDPKQKDCVYPFKGLCGAAVAYKLMEALWESMGKDST-----DLDDLIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSI 305 +ATV DV+ L NR +V +GL + +R NPGLKALIE I + + ++G+++GP I Sbjct: 234 IATVGDVMDLEDENRIFVKEGLQMLKRTKNPGLKALIECTGIDKESLNSYHIGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + +LL +E ++LA L LN +R+ M ++ A+ +V + D+ Sbjct: 294 NASGRLDTAKRALKLLRVRTQKEADILAGDLKALNDSRKDMTEEAVKLAKEQV--ETTDL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+V+ H + G++A R++E + +P F ++ EDG GSGRSI+G+ + + + Sbjct: 352 SDDRVLVIYLPDCHESLAGIVAGRIRECYYKPVFVLTDAEDG-AKGSGRSIDGYHMYEEL 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + IL K GGH +AAGL++E+ N + + ID + Sbjct: 411 NKC--KDILTKFGGHRLAAGLSLEKENIAEFRRRLNENC--TLTEEEMKEKVTIDMEMPF 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 V L+ LE P+G GN P+FA L R++ L++ + + ++A Sbjct: 467 LCVTEELVKELELLEPFGKGNTKPIFAARGVTLLGARILGKNRNVLKIKAQDANGSVIEA 526 Query: 544 IAFRVYGTPLG-----------EFLMQSRGKRMHVT--GHLCVNYWRGSKRCQLRVLDAS 590 + F+ L + L+Q RG + + + +N + G + Q+ + Sbjct: 527 MLFQNVEGFLKNMEETYGRMEVDALLQGRGGHIKIAVTYYPDINEYMGKRTPQIVITHYR 586 >gi|218886235|ref|YP_002435556.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757189|gb|ACL08088.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 571 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 172/583 (29%), Positives = 279/583 (47%), Gaps = 24/583 (4%) Query: 16 FRWVSLLGQ-EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 W+ A ++ + +++ R+L R V S+D +L+P++R L P Sbjct: 3 RDWIFRPEPVAASPPFAAWAERLEVSELIVRLLWRRGVGSVDDMALYLSPNLRHLAPL-A 61 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++AA + + ++GDYDVDG S AL+ L+ + A +IPDR + Sbjct: 62 EWPGLEQAASTLADGLLAGLPFAVWGDYDVDGVTSTALVKGVLAQHGMAAAHHIPDRREE 121 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG N + +E+ +G +L++TVDCG + + ++ A G+ V+V DHH A A Sbjct: 122 GYGLNVAWVERLAEQGVRLLLTVDCGISDVEPVRRARELGMTVVVSDHHMPPEGLPDANA 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + NP + L GV FLV+ + L + D+ LDLVAL T+ DV Sbjct: 182 ICNPRLAEC--PCPALAGVGVSFLVMAAVNAALAER--TGKKADMRDFLDLVALGTLADV 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRI 311 V L G NR V GL+ PG+ AL + I A + + + P INA GR+ Sbjct: 238 VNLHGQNRILVKNGLLKIAEARRPGMAALKTVSGYNPTAAIGAGQVVFGLAPRINAAGRM 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++ L +LL++DD E LA +LD N RR E +L+ A+ + Q + Sbjct: 298 GKAELALQLLLTDDHAEAARLAQELDAENARRRAEEDRILDAAKKQAEGQL----DRMGL 353 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ GD WHPG++G++A+R+ ++F RP+ +S + GSGRS+ FD+ ++ Sbjct: 354 VLHGDDWHPGVIGIVASRIVDEFYRPTLILSSDGQSM-KGSGRSVAEFDLHAGLTRC--A 410 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NI 490 + GGH AAG+++ + L + F + TP K+DG L + + Sbjct: 411 DLFTAFGGHHQAAGMSMPASHVDTLRERFDAVVRAELGDTPLTPRLKLDGELGFALAGDF 470 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD-SETLQAIAFR 547 L+ LE P+G GN PVFA P ++ +R H+++ + TL+A A+R Sbjct: 471 TLLKELEMLQPFGTGNAEPVFASPPVLVRDLRRFGPTRDHVELQLTDESCGITLRAKAWR 530 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+F RG R+ + ++ + G+ LR+ D Sbjct: 531 QS----GQFPDSLRGTRVRLAYTPRIDRYNGAASVDLRIKDWK 569 >gi|302671351|ref|YP_003831311.1| ssDNA exonuclease RecJ1 [Butyrivibrio proteoclasticus B316] gi|302395824|gb|ADL34729.1| ssDNA exonuclease RecJ1 [Butyrivibrio proteoclasticus B316] Length = 615 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 165/622 (26%), Positives = 281/622 (45%), Gaps = 59/622 (9%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV----------SIDYAKDFLNPSIR 66 +W+ + +R + K I +I AR++ NR + S + +L+ + Sbjct: 3 KWMVANKKADFDR---LAGKFGIRNITARLIANRLINSRETEAEDCSDEAVSRYLDGDLS 59 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+ DP ++ D D AR + + I +KI + GDYDVDG S ++ R L + Sbjct: 60 -LLHDPRLMADMDLGARIMYERIQAGDKIRVIGDYDVDGICSTYILARGLELLGAQVDYV 118 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK- 185 +PDR+ DGYG + L+++ + G IIT D G + + + +A ++G+ VIV DHH+V Sbjct: 119 LPDRVKDGYGLSIKLVDEALQAGIDTIITCDNGIAASEQIAHAKDKGMTVIVTDHHEVPF 178 Query: 186 ------------------SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227 PA A+++P R D +C A V + + ++ Sbjct: 179 EISEPNSDITGDQEDSRVEILPPADAVIDPKRADGDYPFKEICGAVVAYKFMQVLSEFF- 237 Query: 228 QDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287 +D+ L +L LATVCDV+ L NR V + L + N GL+ALI + + Sbjct: 238 EDSSDKLGNYFTEMLIYAGLATVCDVMELKDENRVIVKESLRLIGHTENVGLRALIHQNS 297 Query: 288 ISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 + I + G+++GP +NA GR+ + +L +D E M+A L LN +R+ M Sbjct: 298 LDEGKILCYHYGFVLGPCLNATGRLDLAERALKLFFEEDENEAAMMAANLKQLNDSRKDM 357 Query: 347 ESAMLEQAEAKVLTQCDDI--QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 +++A V Q D + V+V+ H I G++A ++KEK+ RP+ ++ Sbjct: 358 TKLGVDRAIEIVEEQKADYAGELPKVLVIYLPDVHESIAGIIAGKVKEKYYRPTIVLTKA 417 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 DG GSGRSI+ +D+ + +S E + K GGH MAAGL++ N L D + Sbjct: 418 ADGGAKGSGRSIDKYDMYENLSACKE--LFTKFGGHKMAAGLSLPEENIDILKDRLNQNC 475 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + A P ID V+ +I L+ E P+G GN P+FA + S R++ Sbjct: 476 D--LAAGDFEPTLHIDMVMPLKYADIDLVREFERLEPFGNGNTKPIFAQRDVVFLSGRIL 533 Query: 525 NLAHL--QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG---------------KRMHV 567 + + + + F ++L + G +++V Sbjct: 534 GKNRNCGKYRVTDESGRIYEMMYFGDMD-KWHDYLSEKFGHDAVDDLYSGNTDGSMKVNV 592 Query: 568 TGHLCVNYWRGSKRCQLRVLDA 589 + +N ++G + Q + D Sbjct: 593 AYYPDINSYQGRESLQFVMNDF 614 >gi|291537296|emb|CBL10408.1| exonuclease RecJ [Roseburia intestinalis M50/1] Length = 585 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 166/597 (27%), Positives = 279/597 (46%), Gaps = 43/597 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + I ++ I + AR++ NR V + +L I L DP +L Sbjct: 3 KWFVINKGADFA---GIAKRFGISPVTARLIRNRGVMGDEAIARYLKGGIGELY-DPHLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+ +VQ I +KI + GDYD+DG S ++ + ++ C + + IPDR+ DGY Sbjct: 59 LDSDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L+E+ G IIT D G + + +A + G+ V+V DHH++ Sbjct: 119 GINDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A A+VN +++ +LC A V + V+ ++Y + L+ VA Sbjct: 179 KRSEADAIVNSKQMECTYPYKNLCGAAVAWKVIQILYEK-----CDIAVEESYDFLENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 ATV DV+ L NR V +GL NPG++ALI + + I++ + G+++GP I Sbjct: 234 FATVGDVMDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + + L + +D ++ +A +L LN R+ M + +E A +V Sbjct: 294 NASGRLETAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEE---GN 350 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+VV H + G++A R++E +P+F ++ EDG GSGRSIE + + Sbjct: 351 TGEKVLVVYLPDVHESLAGIIAGRIREACHKPTFVLTKSEDGV-KGSGRSIEAYSMY--E 407 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + K GGH MAAGL++ N + + P KID + Sbjct: 408 ELCKCQELFTKFGGHPMAAGLSLPEANVEIFREKINACCG--LTEEDFIPKIKIDIPMPV 465 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +I L++ L P+G N P FA N + VV L++T +++ +++ A Sbjct: 466 DYPDIPLVNELLLLEPFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISA 525 Query: 544 IAFR-------VYGTPLGE------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F YG GE FL ++ G RM V + +N ++G++ Q+ + Sbjct: 526 VYFGDVEEFREYYGRKYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIK 582 >gi|319764017|ref|YP_004127954.1| single-stranded-DNA-specific exonuclease recj [Alicycliphilus denitrificans BC] gi|317118578|gb|ADV01067.1| single-stranded-DNA-specific exonuclease RecJ [Alicycliphilus denitrificans BC] Length = 571 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 184/580 (31%), Positives = 271/580 (46%), Gaps = 30/580 (5%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 E RA ++ + ++AR+ R + AK+ L+ ++ L+P P L +AA Sbjct: 7 EIPPRAAWALEQAGVHPLLARLYAARGIR---AKEELDDALARLLP-PDTLKGAREAAAL 62 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143 + AI +++ I DYD DGA + A+ +R L + +PDR+VDGYG S+ Sbjct: 63 LADAIAQDKRLAIVADYDCDGATACAVGVRGLKLLGARHVQYLVPDRVVDGYGLTASIAR 122 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + +GA ++ITVD G S + + A G+ V+V DHH + A A+VNPN+ Sbjct: 123 RVAQQGADVLITVDNGIASVEGVAEAKALGLAVLVTDHHLPGPQLPAADAIVNPNQPGCG 182 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNR 261 + GV+F VL+ + LR + L LL LVAL TV DVV L NR Sbjct: 183 FESKAMAGVGVMFYVLMQLRAELRARGRFDQASQPRLEPLLPLVALGTVADVVRLDNNNR 242 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL R Q PG++AL + + T + G+ +GP INA GR+ + LG Sbjct: 243 RLVAQGLKRMRAGQMQPGIRALFDAAGRKAQAATTFDFGFALGPRINAAGRLADMTLGIE 302 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD-IQQASVIVVEGDRW 378 L++DD + LA +LD +N+ RR +E M EQA + D+ + I V + Sbjct: 303 CLLTDDDAHADQLARQLDAINRERRELEGGMREQALLLAESLFDEGEEPPPAISVFDPDF 362 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFA--VEEG 432 H G+VG++A+RLK+K RPSF + + + GSGRSI GF + + G Sbjct: 363 HEGVVGIVASRLKDKLHRPSFVFATSGAPGREHELKGSGRSIAGFHLRDALDLVAKRHPG 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +++K GGHAMAAG TV +F F + A + A T + DG L L Sbjct: 423 VILKFGGHAMAAGCTVAAEHFAAFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRAEL 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 +D L +G G P F ++ S R+V HL + Q + AI F Sbjct: 483 VDQLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEARNHLSLKLLHQ-GRPVDAIWFGHTE 539 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + L VN WRG +R Q V Sbjct: 540 QLPERAL---------LAFRLDVNEWRGERRVQFLVEGVQ 570 >gi|254804713|ref|YP_003082934.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis alpha14] gi|254668255|emb|CBA05107.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis alpha14] Length = 566 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTVFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|121634620|ref|YP_974865.1| putative single-stranded-DNA-specific exonuclease [Neisseria meningitidis FAM18] gi|120866326|emb|CAM10067.1| putative single-stranded-DNA-specific exonuclease [Neisseria meningitidis FAM18] Length = 566 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVGRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|332978269|gb|EGK14999.1| single-stranded-DNA-specific exonuclease RecJ [Psychrobacter sp. 1501(2011)] Length = 615 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 171/618 (27%), Positives = 270/618 (43%), Gaps = 61/618 (9%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 L + + Q+ + R+ + R V ++ + L+P L D DK Sbjct: 11 KLPDDLPENLQTLYQQ---SPTLTRLFLARGVGSSDELEY---GLSSLLPA-DGLKDIDK 63 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 A + + +AI ++I+I GD+D DGA S ALMMR L+ + +PDR GYG P Sbjct: 64 AVQILDEAIEQQQRILIVGDFDCDGATSTALMMRVLTEMGAQVDFVVPDRFKYGYGLTPE 123 Query: 141 LMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 +++ I++ ++I+TVD G +S++ + A I V++ DHH A A+VNPN+ Sbjct: 124 IVQLGIDQYAPEVIVTVDNGISSHEGVAKANENNISVVITDHHLTTKPNPAADAVVNPNQ 183 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 + L GV F +L + + R+ + + LDLVAL T+ DV L Sbjct: 184 MQCTFDSKALVGVGVAFYLLGRLSKYRREAG--RSSVQVSRYLDLVALGTIADVGVLDHN 241 Query: 260 NRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLG 317 NR V GL R + + G+ AL+E ++ G++IGP INA GR+ +G Sbjct: 242 NRTLVAHGLAAIREGRCSLGILALLELAGRDPRKMTVQDFGFVIGPRINAAGRMDNMRIG 301 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV----- 372 LI+D ++ + LA +LD LN+ RR +E M +QA+ + S Sbjct: 302 IECLIADSMEDAKRLAFELDKLNKERRYVEGGMRDQADDILRQLQPSQDSDSDKNSSQLL 361 Query: 373 ----------------------------VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 + D WH G++G++A RLKE RP+ + + Sbjct: 362 AQPSQSNQSDTDVITEDKSKPSDLRSLILYQDDWHQGVIGIVAGRLKETHYRPAIVFAPD 421 Query: 405 EDGK------GIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRL 456 +D K GS RSI G I + E + GGHAMAAGLT+++ +F Sbjct: 422 DDTKLGAEDAIKGSARSISGIHIRDAIESIAEGDPELITHFGGHAMAAGLTLKKKDFEAF 481 Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516 F+ A + DG L A ++ ++ L +G G P F Sbjct: 482 AQAFEDLM-QTYDASVFEEEQFTDGNLLAQDFSLQFVESLTQGYIWGHGFVPPQFDG-VF 539 Query: 517 KLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 ++ R++ HL+++ + AI F R K +HV L +N Sbjct: 540 EVIETRILKDKHLKLSLRYPGVLYPIDAIWFNYDNAKW-----DYRAKEVHVLFELDINE 594 Query: 576 WRGSKRCQLRVLDASPVE 593 W G++ QL V D + VE Sbjct: 595 WNGNQNIQLMVKDLAVVE 612 >gi|313668688|ref|YP_004048972.1| single-stranded-DNA-specific exonuclease [Neisseria lactamica ST-640] gi|313006150|emb|CBN87611.1| putative single-stranded-DNA-specific exonuclease [Neisseria lactamica 020-06] Length = 566 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDIGFALGPRINAAGRLDDMSVGIACLLARDDVEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPPGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPNLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|186476206|ref|YP_001857676.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia phymatum STM815] gi|184192665|gb|ACC70630.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia phymatum STM815] Length = 577 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 183/576 (31%), Positives = 269/576 (46%), Gaps = 33/576 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A A+ +H + ++AR+ +R V D + + L P P L CD AA + Sbjct: 20 PADAEALI-RHGLHPVLARLYASRGVCLPDEVET----GLARLTP-PASLKGCDTAAALL 73 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM--- 142 AI ++++ DYD DGA + A+ +R L + +P+R GYG P ++ Sbjct: 74 ADAIEGKRRMLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVGLA 133 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + L+ITVD G S D ++ A GIDV+V DHH E A A+VNPN+ Sbjct: 134 AQRPGGKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNPNQPGC 193 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGL 259 + GV+F VL+ + LR L LLDLVAL TV DVV L G Sbjct: 194 SFPSKCMAGVGVMFYVLLALRAELRTRGAFGETRPEPRLDGLLDLVALGTVADVVKLDGN 253 Query: 260 NRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLG 317 NR V +GL R + PG+ AL + +LG+ +GP +NA GR+ + +LG Sbjct: 254 NRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARSASGFDLGFALGPRLNAAGRLSDMSLG 313 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 L +DD LA +LD +N+ RR +E+ M +QA + D A+ I + Sbjct: 314 IDCLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALDDLS--GVDPAGATTITLFNPT 371 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEED--GKGIGSGRSIEGFDIGKMVSFA--VEEGI 433 WH G++G++A RLKEKF RPSF + ++ GSGRSI GF + + E G+ Sbjct: 372 WHQGVIGIVAGRLKEKFHRPSFTFALADERGETVKGSGRSIPGFHLRDALDLVSKREPGL 431 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + + GGHAMAAGLT+ + R F++ + + + DG L + + Sbjct: 432 IARFGGHAMAAGLTIATADLQRFTAAFEQIGREWLTQDVLARTLETDGELEDAYFTPQFV 491 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 +ML+ A +G G P PVF+ + S +V HL++ + + AI F Sbjct: 492 EMLD-AAVWGQGFPAPVFSGE-FDVMSQALVKDKHLKLQLM-RGRQRFNAIWFNHTE--- 545 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 S R V L + W G R QL V A Sbjct: 546 ------SLPARTTVAYRLSADSWNGVARVQLIVEHA 575 >gi|313113515|ref|ZP_07799104.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium cf. prausnitzii KLE1255] gi|310624242|gb|EFQ07608.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium cf. prausnitzii KLE1255] Length = 710 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 187/568 (32%), Positives = 286/568 (50%), Gaps = 25/568 (4%) Query: 30 ALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 A A+ + ++A VL R ++ A L + DP +LTD DKA RI +A Sbjct: 47 AAALAAQQKENALLAGVLTARGITDPTEALTLLAG--EEELSDPSLLTDMDKACERIWRA 104 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I E I++FGDYDVDG + AL+ + L +P R DGYG + + + ++ Sbjct: 105 IDEGETIVVFGDYDVDGVTATALLYQHLKGMGATVKCMLPSREGDGYGLSRNAIRSIHDK 164 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 G +LI+TVD G ++ + YA GID+I+ DHH A A+V+P R DD S Sbjct: 165 GCKLIVTVDNGISAVEEADYAAELGIDLIITDHHLPPETLPKAIAVVDPRREDDTSPFKG 224 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 LC AGV F + + + P L DL A+ TV DV+PL G NR V GL Sbjct: 225 LCGAGVAFKLCAAL-------DGCPPEEMLDYCGDLAAVGTVADVMPLTGENRTLVKAGL 277 Query: 269 MVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 + PGL+AL+E V P+TAEN+ Y I P INA GR+ + +L++ +D Sbjct: 278 RQLQNTDRPGLEALLEEVGLAGKPVTAENVSYAIAPRINAAGRMDNAVTALQLVMCEDPD 337 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 LA KL+ +N R+ E + + A+ + + + ++ V+++ G WHPG++G++A Sbjct: 338 RAAELAHKLNEINTKRQETELQIFKAAQELLEQEPERLEDR-VMLLWGRDWHPGVIGIVA 396 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447 +RL E+ GRP ++ +E G+ GSGRS++GF++ + +L++ GGHAMAAGL+ Sbjct: 397 SRLVERTGRPVIVVTIDEHGECKGSGRSVQGFNLHACIGAC--ADLLIRYGGHAMAAGLS 454 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 V N L +A P L TTP + D ++ V + + L+ PYGA NP Sbjct: 455 VREENLPALRRRLNDWAARECPVLHTTP-LECDLPIHLDRVTVESVRKLDQLAPYGAENP 513 Query: 508 NPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 PVF N L + V+ H ++ ++ A+ F + E L + G + Sbjct: 514 TPVFLLQNAVLDGVYPVSEGRHSRLRLRQGNASVY-AVWFGMP----PEQLPYAMGDVVD 568 Query: 567 VTGHLCVNYWRGSKRCQL--RVLDASPV 592 +L V + + QL R+LD P Sbjct: 569 AALNLSV--YDSPRGAQLSGRILDLHPA 594 >gi|225548078|ref|ZP_03769363.1| hypothetical protein RUMHYD_00057 [Blautia hydrogenotrophica DSM 10507] gi|225040754|gb|EEG51000.1| hypothetical protein RUMHYD_00057 [Blautia hydrogenotrophica DSM 10507] Length = 548 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 170/558 (30%), Positives = 269/558 (48%), Gaps = 29/558 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +WV + I Q++ I ++AR++ NR V S + +LN + L P P Sbjct: 5 KWVVSAKRADFQ---KIGQEYGIDPVIARLIRNREVQSSEQIDQYLNGKVEDL-PSPWFF 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA I I + I I GDYD+DG S +++R L + YIPDR+ DGY Sbjct: 61 KDMEKAVNLIEAKIRQRKLIRIIGDYDIDGVVSTYILLRGLDRLKAKVDTYIPDRVADGY 120 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G + L+EK + +G I+T D G +Y+ + YA +G+ VIV DHH+V Sbjct: 121 GIHLPLIEKALEDGIDTILTCDNGIAAYNEIVYAKERGLTVIVTDHHEVPFTKKADEKEE 180 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+VNP + + +LC A V + +++ +Y ++L A Sbjct: 181 VLPPADAIVNPKQRNCSYPNKNLCGAAVAYKLILALYERYGIPKAEG-----EEFIELAA 235 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 +ATV DV+ L G NR V +GL N GL+ LI ITA ++G++IGP + Sbjct: 236 IATVGDVMDLQGENRVLVKEGLKRLENTWNLGLRELIRANGLEDKKITAYHIGFVIGPCL 295 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL S D +E LA L +NQ+R+ + + ++QA V + + Sbjct: 296 NASGRLDTAARSLELLKSQDVKEAARLAGDLLAINQSRKALTAQGVKQAVEMV--ETTSL 353 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++ V+VV H + G++A RL+E++ RP ++ E GSGRSIE + + Sbjct: 354 REDRVLVVYLPDCHESLAGIIAGRLRERYYRPVLVLTKGEQCV-KGSGRSIEAYSM--FE 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 S + ++++ GGH MAAGL++E N RL + + P ID + Sbjct: 411 SLTECKELMIQYGGHPMAAGLSMEEENVPRLRKQLNEKCK--LTKEDLCPKITIDVAMPF 468 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 S + L++ L+ P+G GNP PVFA ++ RV ++M ++D + A Sbjct: 469 SYIRRELVEQLDLLEPFGKGNPKPVFAQKGVRVLGCRVFGQSRNVVKMQAVTEDGCGMDA 528 Query: 544 IAFRVYGTPLGEFLMQSR 561 + E L +R Sbjct: 529 VYLERPNLFWIELLRMNR 546 >gi|21231294|ref|NP_637211.1| putative single stranded DNA exonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991528|ref|YP_001903538.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas campestris pv. campestris str. B100] gi|21112947|gb|AAM41135.1| putative single stranded DNA exonuclease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733288|emb|CAP51487.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas campestris pv. campestris] Length = 579 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 172/565 (30%), Positives = 271/565 (47%), Gaps = 26/565 (4%) Query: 41 DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R V + A +P + L+ P +L + AA + AI +I++ G Sbjct: 24 PLLRRIYAARGVVDVHGA----HPRLGQLL-SPELLHNSRVAAELLADAIAAQRRILVVG 78 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA + A+ +R L + + +P+R+V GYG +P+L+++ L++TVD Sbjct: 79 DFDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDLLVTVDH 138 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G + + A +G V+V DHH PA A+V+PN + D L GV+F V Sbjct: 139 GIACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLVQDSFPSKTLAGVGVIFYV 198 Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG- 275 L+ + +LR DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 199 LLALRGVLRARGAFAERAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLRDGKG 258 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 GL+ALI+ + ++A ++G+ + P +NA GR+ + LG LL+ +D +A Sbjct: 259 CIGLRALIDASGRDAARLSASDIGFALAPRLNAAGRLEDMALGIELLLCEDWSRAREIAG 318 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK+ Sbjct: 319 LLEEINAERRAVQQLMTDDAEQAVTKVMLAADGALPMAACLFDPEWHPGVIGLVASKLKD 378 Query: 393 KFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 + RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL++ Sbjct: 379 RLHRPVIALAPAEPGSDQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSL 438 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E FQ +V A + DG L A ++ + L +AGP+G G P Sbjct: 439 EHRALAAFEQAFQTQVQAMVDASLLQAELHSDGELAAHELDHLHAEALRAAGPWGQGFPE 498 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F ++ R++ HL++T E L AI F + + + + Sbjct: 499 PLFDGQ-FEVLQWRLLKERHLKLTLRCAGRAEPLNAIHFNGWRG-------SEPARTVRI 550 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V P Sbjct: 551 AYRLVGDDYRGGTAVQLIVEHCEPA 575 >gi|212702213|ref|ZP_03310341.1| hypothetical protein DESPIG_00224 [Desulfovibrio piger ATCC 29098] gi|212674339|gb|EEB34822.1| hypothetical protein DESPIG_00224 [Desulfovibrio piger ATCC 29098] Length = 576 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 170/586 (29%), Positives = 275/586 (46%), Gaps = 20/586 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 RW+ G + ++ +I ++ +L R + + +L+ + L+P P Sbjct: 2 KRWLFREPPAGSPP-RGLARELSISPLLLDILWRRGLDSPEELDAYLSARLPDLVP-PSR 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 +AA I +A+ + +K+ ++GDYDVDG S L++ L + A ++PDR +G Sbjct: 60 WPQFPQAAEVISKALLDGKKLAVWGDYDVDGITSSTLVLDVLEAHGLEALWHVPDRRSEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E+ +G +++TVDCG + A+ A G+ V+V DHH E PA A+ Sbjct: 120 YGLNIPAIEELAAQGCGILLTVDCGISDMAAVARARELGMTVVVSDHHLPPPELPPADAI 179 Query: 195 VNPN-RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 NP +D HL GV F ++ + L F + +LDLVAL T+ DV Sbjct: 180 CNPRLGPEDDMPCPHLAGVGVAFFLMAAVNAAL--APHTGRRFKMDKVLDLVALGTLADV 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRI 311 + L G NR V GL PG+ AL + + A + + + P INA GR+ Sbjct: 238 MRLGGQNRILVRGGLDKLAEAARPGIAALKTVSGSDAAARLNAGQVVFRLAPRINAAGRM 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ +LL S D E LA LD LN RR E + A + Q + Q+ ++ Sbjct: 298 GAADTALQLLRSKDHVEALRLAQHLDALNTQRREEEERIWAAAREQAHRQLEQRQRPAL- 356 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ G WHPGIVG++A+R+ E+F RP+ + +++ GSGRSI FD+ Sbjct: 357 VLYGGDWHPGIVGIVASRIVEEFYRPTIIL-CDDNNMMKGSGRSIREFDLY--AGLQKTA 413 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH +AAG+ +E R + F++ + + TP ++ L+ + + Sbjct: 414 HVLAGFGGHKLAAGVRLEPNQLERFREAFEQVVADELGEQPLTPALLLECELDFQQASDS 473 Query: 492 -LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSETLQAIAFR 547 + LE P+GAGN PVFA P + + H+++ + TL A + Sbjct: 474 AFLQELELMQPFGAGNAEPVFASPELTVVDRSPLGYSGDHVRLRLKDSASGITLMAKGWN 533 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + F S G R+ V ++Y+RG + + D PV Sbjct: 534 MATA----FPPSSVGSRIRVAYTPRLDYYRGVASIDVGIKDWQPVT 575 >gi|182418330|ref|ZP_02949625.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium butyricum 5521] gi|237666390|ref|ZP_04526375.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377712|gb|EDT75256.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium butyricum 5521] gi|237657589|gb|EEP55144.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium butyricum E4 str. BoNT E BL5262] Length = 588 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 167/601 (27%), Positives = 280/601 (46%), Gaps = 43/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW + + K+ I ++++++++NR+++ D+ K ++ P +L P + Sbjct: 4 RWFIKNKKMDY---KYMAHKYGITELMSKLIINRDITDDFLIKSYIKPEFNMLHE-PREM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +KA I+ I N KI I GDYDVDG SV ++ L C + + IPDRI DGY Sbjct: 60 KDMNKAVEIIINKIKNKNKIRIIGDYDVDGVISVYILYCALKRCGADVDYEIPDRIKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N ++EK +E IIT D G ++ D ++ A G+ VIV DHH + Sbjct: 120 GVNVGIIEKAKDEEIDTIITCDNGISAIDPIKTAKELGMTVIVTDHHDIPFVEDELGERT 179 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A A++NP + + LC AGV F ++ ++Y + + ++ + Sbjct: 180 FIRSEADAILNPKQEECKYKFKSLCGAGVAFKLIQVLYEEFKISEEEAF-----DFIEFL 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA-LIERVNISSPITAENLGYMIGPS 304 A+ATVCDVV L+ NR +V KGL + N GL+ LIE I +LG++IGP Sbjct: 235 AIATVCDVVDLVDENRVFVKKGLEKINKTTNLGLQELLIECEIQDKKIGVYHLGFIIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + G RLL+ D +E LA L LN+ R+ M +E A V + D Sbjct: 295 INASGRLDNAKKGVRLLLCKDEKEAVTLAKDLVKLNEERKSMTMNGVEDAIEIV--ENSD 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ V V+ H + G++A R++EK+ P+ ++ E+G GSGRSIE +++ Sbjct: 353 MKNNKVFVIYLPHIHESLAGIIAGRIREKYNVPTLILTKSENG-AKGSGRSIEEYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +L K GGH MAAG +++ N + + ID VL Sbjct: 410 EELVKCKDLLDKFGGHPMAAGFSLKEENIDEFRKRLNE--KTTLNEEDLLRKVTIDTVLP 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 + L++ LE P+G N P+FA + + ++ L+M +++ + + Sbjct: 468 LDKITYDLVNELERLEPFGKANSKPLFAEKDINVIKAMILGKNRNVLKMKLKTKAGKLID 527 Query: 543 AIAFRVYGTP-------------LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + F T + + ++ + + +N + G+ Q+ V + Sbjct: 528 GVYFGDIETFEEVIRDKYGNDQLIKLYDGSYNDVKLDMVFYPDINEYNGNVSLQVVVQNY 587 Query: 590 S 590 Sbjct: 588 R 588 >gi|329942499|ref|ZP_08291309.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila psittaci Cal10] gi|332287134|ref|YP_004422035.1| single-stranded-DNA-specific exonuclease [Chlamydophila psittaci 6BC] gi|313847730|emb|CBY16720.1| putative exonuclease [Chlamydophila psittaci RD1] gi|325507043|gb|ADZ18681.1| single-stranded-DNA-specific exonuclease [Chlamydophila psittaci 6BC] gi|328815409|gb|EGF85397.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila psittaci Cal10] gi|328914375|gb|AEB55208.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila psittaci 6BC] Length = 590 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 150/566 (26%), Positives = 257/566 (45%), Gaps = 13/566 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S+S W+ +I ++ + + A+ ++R ++D +DFL + L Sbjct: 6 NSSVSNPTWIYPKYDP--ALLSSIIKELHLHPVAAQTFISRGFQTVDEVRDFLYVHLSNL 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DP +L D KA +R++ A E +M++GD DVDG VAL++ FL + + Sbjct: 64 H-DPELLLDMSKAVQRLLLAKERGEHVMVYGDSDVDGITGVALLVEFLRSIEMKVSYCFL 122 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 + YG L+ K EG L+ITVDCG T+ + QGIDVIV DHH + Sbjct: 123 GAFLKHYGEPSLLIAKMKEEGVTLLITVDCGITAGKEVSDINKQGIDVIVTDHHMPTGKI 182 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A +NP D L GV F + + L Q N L D+ LLDLV L Sbjct: 183 PHCIATLNPKLRDHTYPNKDLTGVGVAFKLARGVVNAL-QKNNPKLKLDIKHLLDLVTLG 241 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307 TV DV L+G NR V G+ + GL+ L + +T+ ++ I P +N+ Sbjct: 242 TVTDVGTLLGENRTMVRHGIKEIAKGSRLGLRKLCIFSGVKPSEVTSTDIVLKISPKLNS 301 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ +++ G LL++ D + + L LD +N+ R+ +E+ + K+L DI + Sbjct: 302 LGRLADASKGVELLLTKDPEVADDLIQYLDKINRERQKIEADVFHDV-QKILKNQPDIVK 360 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 + IV+ WH ++ +++ARL + + +P IS + G G GS R+I F + ++ Sbjct: 361 QAAIVLSSQDWHSRVIPIISARLAKAYNKPVAIISNQG-GIGKGSLRTIGSFPLLGILQK 419 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + GGH AAG+ + F ++ + +D + Sbjct: 420 CSPM--FISYGGHDFAAGIIINEDRIEAFRKKFIHLVNSSLKKEKAVVTLPLDARADFDE 477 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 ++ L+ ++ P+G GNP P+F H+++ +++ HL++ + L+ IAF Sbjct: 478 IDHDLLSSIDLFEPFGKGNPVPIFYTIVHQVRYPKLLPGNHLKLYL-NYGERNLEGIAFG 536 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCV 573 + L S + + + + Sbjct: 537 LGDRIG--ALKASWNQPLELAYTPRL 560 >gi|170694749|ref|ZP_02885900.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia graminis C4D1M] gi|170140380|gb|EDT08557.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia graminis C4D1M] Length = 568 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 183/570 (32%), Positives = 270/570 (47%), Gaps = 30/570 (5%) Query: 32 AITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 I +H + ++AR+ R V + L + L+P P L CD+AA + AI Sbjct: 15 EILVRHGLHPVLARLYAARGVCLPDE---LETGLARLVP-PAALKGCDEAAALLADAIQQ 70 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFINE 148 ++++ DYD DGA + A+ +R L + +P+R GYG P ++ + + Sbjct: 71 KRRMLVVADYDCDGATACAVAVRGLRMFGGKIDYLVPNRFEYGYGLTPEIVALAAQSASG 130 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 +L+ITVD G S D ++ A GIDV+V DHH + A A+VNPN+ Sbjct: 131 KPELLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDQLPAARAIVNPNQPGCEFPSKC 190 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + GV+F VL+ + LR+ L LLDLVAL TV DVV L G NR V Sbjct: 191 IAGVGVMFYVLLALRAELRRRGAFGDDFPEPRLDGLLDLVALGTVADVVKLDGNNRVLVA 250 Query: 266 KGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLIS 323 +GL R+ A + R A +LG+ +GP +NA GR+ + +LG L + Sbjct: 251 QGLQRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSDMSLGIECLTT 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 DD LA +LD +N+ RR +E+ M +QA + + D A+ I + WH G++ Sbjct: 311 DDIGRAWELAQQLDTMNRERREIEAGMQQQALDDLSS--IDPDGATTITLFNPAWHQGVI 368 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439 G++A RLKEKF RP+F + +D GSGRSI GF + + E G++VK GG Sbjct: 369 GIVAGRLKEKFHRPAFTFALADDSGQLVKGSGRSIAGFHLRDALDLISKREPGMIVKFGG 428 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGLT+ + R F+ + + + DG L + +DML+ A Sbjct: 429 HAMAAGLTLATADVPRFTAAFEAVGREWLSDDALSRTVETDGELEDAYFTPQFVDMLD-A 487 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +G G P PVF+ + S +V HL++ + + AI F T Sbjct: 488 AVWGQGFPAPVFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHTDT-------- 537 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 R V L + W G R QL V A Sbjct: 538 -LPARTTVAYRLASDTWNGVSRVQLIVEHA 566 >gi|330444197|ref|YP_004377183.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila pecorum E58] gi|328807307|gb|AEB41480.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila pecorum E58] Length = 582 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 155/580 (26%), Positives = 263/580 (45%), Gaps = 15/580 (2%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +WV + ++ + IVA++ V+R S++ FL + L DP + Sbjct: 12 KWVYPKQDHAFRS--KVIKEFHLNPIVAQIFVSRGFHSLEEIHSFLYSHLSSLY-DPKLF 68 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D KA R++ A E ++I+GD DVDG VAL++ F + + + ++ Sbjct: 69 CDMPKAVDRLLLAREKQEHVVIYGDSDVDGMTGVALLVEFFQMIGIKVSYFFLGGMLKQL 128 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G +L+ K E A L+ITVDCG T+ + T QGIDVIV DHH + A + Sbjct: 129 GEILTLITKLKEENASLLITVDCGITAGKEISDITKQGIDVIVTDHHMPTGKIPHCVATL 188 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV-PLNFDLLSLLDLVALATVCDVV 254 NP + L GV F + +Y L + DL LDLV T+ D+ Sbjct: 189 NPQLKGNTYPNRGLTGVGVAFKLAQGVYNALVSKGDLKKEQIDLKRFLDLVTFGTLTDMG 248 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 L+G NR V G+ R GL L S +T+ ++ I P +N+ R+ + Sbjct: 249 ELLGENRMMVRYGIKEISRGRRLGLNKLCALSGVEKSKVTSTDIVLKIAPKLNSLARLAD 308 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 G LL++ D + + L K+DV+N+ R+ +E+ + + K+L I + + IV+ Sbjct: 309 PAEGVELLLTRDPKRADDLIKKIDVVNRERQRIEAEVFQSV-QKILEDDPKILKHAAIVL 367 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH ++ ++AARL + + RP IS ++ G G GS R++ F + ++ + Sbjct: 368 ASSEWHARVIPIIAARLAKAYNRPVVIISIQD-GIGKGSARTVGAFSLFGILKKC--SSL 424 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH AAG+ ++ + F ++ + TT F +D + ++ L+ Sbjct: 425 FLSYGGHDFAAGIILKENHIEDFRKKFIHLVNSSLKKDDTTITFPLDAHAEFNEIDYDLL 484 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 LE P+G GNP PVF H+++ +++ HL++ F Q L+AIAF + L Sbjct: 485 ASLELFEPFGKGNPVPVFYTTVHQVRYPKLLPGNHLKL-FVGQGERNLEAIAFGMGERIL 543 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + ++ G L + D ++ Sbjct: 544 ELKFQWHLP--LEIVYTPRISSSSGV--IHLLIRDFRVIK 579 >gi|37519610|ref|NP_922987.1| single-strand-DNA-specific exonuclease [Gloeobacter violaceus PCC 7421] gi|35210601|dbj|BAC87982.1| single-strand-DNA-specific exonuclease [Gloeobacter violaceus PCC 7421] Length = 773 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 160/593 (26%), Positives = 273/593 (46%), Gaps = 27/593 (4%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIR 66 G+ + RW QE +A + + + ++A+VL+NR ++ + A+ FL P Sbjct: 4 GLSSMLPKQRWRI--AQEDPVQARQLAEAFGLSPLIAQVLINRGLTTCELAEHFLAPESW 61 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 +L +A + QAI + I I GDYD DG S AL++R + + Sbjct: 62 VLPSAGEAFDQLPRALDLLAQAIESGTAIAICGDYDCDGMTSTALLLRAVRSLGGHIEYA 121 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP R+ +GYG N ++E F G LI+TVD G +Y + A G+ VI+ DHH + Sbjct: 122 IPSRLQEGYGINLRIVEAFYERGIGLILTVDNGICAYAPIARAVELGMGVIITDHHDLPE 181 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A++NP + S L GV +++ + R L + LL+L Sbjct: 182 RLPPADAILNPKMIPRTSPYAALAGVGVAYVLAGELARRLGRTGLADC------LLELFT 235 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304 L TV D+ PL+G+NRA+V+ GL N G++AL+ S + E +G+ +GP Sbjct: 236 LGTVADLAPLVGVNRAWVLSGLAKIPGSSNTGVQALLAASGLAGRSDLKPEAIGFALGPR 295 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--- 361 INA GRIG+ LL +DD A + ++ NQ+R+ + + + +A + + Sbjct: 296 INAVGRIGDPVTVIELLTTDDPAVAAERAAECELANQHRQALCAQIEAEAARMLEVEQAG 355 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 D+ VIV+ + WH G++G++A+RLK++ G P F I+ E GS R F + Sbjct: 356 GLDLGCERVIVLAREGWHHGVIGIVASRLKDRHGAPVF-IAAIEGEHARGSARGTPEFHV 414 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + + +L GGH MA G ++ N + +FA + P+ ++D Sbjct: 415 YEALK--DSAELLTGFGGHPMAGGFSLLAANLPAFRERLVQFARARLAPEQVAPLVEVDA 472 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSE 539 + + V+ L+ ++ P G GN PVF ++ + + HL +T +E Sbjct: 473 QVQLARVDRRLLGEIDRLQPCGLGNAEPVFWVAGARVVEQKAMGKTRTHLNLTVSDGTAE 532 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ +R+ + + + N W+G + +L ++ Sbjct: 533 R-RAVGWRMAEW-------LPLPPFVDIAFQVKENNWQGHSKVELELVGLRAA 577 >gi|294787852|ref|ZP_06753096.1| single-stranded-DNA-specific exonuclease RecJ [Simonsiella muelleri ATCC 29453] gi|294484145|gb|EFG31828.1| single-stranded-DNA-specific exonuclease RecJ [Simonsiella muelleri ATCC 29453] Length = 571 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 174/584 (29%), Positives = 268/584 (45%), Gaps = 31/584 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + Q ++A++ R V S D D LN L+ L+ Sbjct: 6 KIATRTVNPQYVNTLMQS-GANPLIAQLYAARAVFSADELSDQLN-----LLIPYQRLSY 59 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C+ AA RI Q+I EKI+I DYD DGA + ++ M+ L + ++P+R GYG Sbjct: 60 CEVAAERIAQSIEQQEKILIIADYDADGATACSVGMKGLGAMGAVVDFFVPNRFEHGYGL 119 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P L + +GA+LIITVD G +S + + A G+DV+V DHH +P +VNP Sbjct: 120 TPELADIAAEKGAKLIITVDNGISSCEGVARAKELGMDVVVTDHHVAG-RYVPDCIIVNP 178 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVV 254 N+ +L GV+F VL+ + +LR +L LLDLVA+ TV DVV Sbjct: 179 NQQGCDFPSKNLAGVGVIFYVLMALRVLLRGRGWFSGSLKEPNLGDLLDLVAVGTVADVV 238 Query: 255 PLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIG 312 PL NR V +GL R G++AL + ++G+ + P +NA GR+ Sbjct: 239 PLDHNNRILVSQGLKRIRAGKTRAGIQALFQVARFDFHKAQPVDIGFKVAPRLNAAGRLD 298 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + ++G L+SD+ + + LA +L+ LNQ R+ +E ML+ + + + + Sbjct: 299 DMSVGIACLLSDNLETAQQLANELNQLNQTRQEIEQDMLQNILGEFPDTLP--ENQTTLT 356 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VE 430 D +H G+VG++A+RLK+KF RP+F + +++G GSGRSIEG + +V Sbjct: 357 AYRDDFHQGVVGIVASRLKDKFYRPTFVFAPDDNGDLRGSGRSIEGVHLRDVVDVVAKKY 416 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ K GGHAMAAGLT+ F++ ++V I + F DG L + + Sbjct: 417 PDLISKFGGHAMAAGLTMRGDGLVIFQAAFEEAVRDVVNKEILSQTFLTDGSLKTEYLTL 476 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 ML S +G G P P F + L + H + +D +A+ +R Sbjct: 477 ECAQMLNS-QVWGQGFPQPTFC-DDFILLRQEFIGKDKQHKKAWLR-KDHHEFEAVFWRC 533 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + V VN W QL V V Sbjct: 534 ADE---------LPDEIRVVYRPVVNEWGNRVDLQLYVEHWEEV 568 >gi|161869777|ref|YP_001598945.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis 053442] gi|161595330|gb|ABX72990.1| single-stranded-DNA-specific exonuclease [Neisseria meningitidis 053442] Length = 566 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ + +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLTALRAELRRRDYFSDGIKEPNLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIDCLLARDDVEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A + Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALSDFPKTLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + ++ +++K GGHAMAAGL++ Sbjct: 375 RFFRPTIVFAPADNGEVRGSGRSIPNLHLRDVLDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + + DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|62184820|ref|YP_219605.1| putative exonuclease [Chlamydophila abortus S26/3] gi|62147887|emb|CAH63634.1| putative exonuclease [Chlamydophila abortus S26/3] Length = 590 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 150/566 (26%), Positives = 258/566 (45%), Gaps = 13/566 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S+S W+ + I ++ + + A+ ++R +ID +DFL + L Sbjct: 6 NSSVSSPIWIYPKHDPALLSF--IIKEFHLHPVAAQTFISRGFQTIDEVRDFLYVHLSNL 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DP +L D KA +R++ A E +M++GD DVDG VAL++ FL + + Sbjct: 64 H-DPELLLDMSKAVQRLLLAKERREHVMVYGDSDVDGITGVALLVEFLRSIEIKVSYCFL 122 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 + YG L+ K EG L+ITVDCG T+ + QGIDVIV DHH + Sbjct: 123 GAFLKHYGELSLLIAKMKEEGVTLLITVDCGITAGKEVSDINKQGIDVIVTDHHMPTGKI 182 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A +NP D L GV F + + L Q N L D+ LLDLV+L Sbjct: 183 PHCVATLNPKLRDHAYPNKDLTGVGVAFKLARGVVDAL-QKNHPKLKLDIQHLLDLVSLG 241 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINA 307 TV DV L+G NR V G+ + GL L ++ +T+ ++ I P +N+ Sbjct: 242 TVTDVGTLLGENRTMVRHGIKEIAKGSRLGLHKLCIFSGVNPSEVTSTDIVLKISPKLNS 301 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ +++ G LL++ D + + + LD +N+ R+ +E+ + K+L DI + Sbjct: 302 LGRLADASKGVELLLTKDPEVADDIIQYLDKINRERQKIEADVFHDV-QKILKNHPDIVK 360 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 + IV+ WH ++ +++ARL + + +P IS + G G GS R+I F + ++ Sbjct: 361 QAAIVLSSQDWHSRVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQK 419 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + GGH AAG+ + F ++ + +D + Sbjct: 420 CSPM--FISYGGHDFAAGIIINEDRIEAFRKKFIHLVNSSLKKEKAVVTLPLDARADFDE 477 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 ++ L+ ++ P+G GNP P+F H+++ +++ HL++ + L+ IAF Sbjct: 478 IDHDLLSSIDLFEPFGKGNPVPIFYTIVHQVRYPKLLPGNHLKLYL-NYGERNLEGIAFG 536 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCV 573 + L S + + + + Sbjct: 537 LGDRIG--ALKASWNQPLELAYTPRL 560 >gi|187924546|ref|YP_001896188.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia phytofirmans PsJN] gi|187715740|gb|ACD16964.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia phytofirmans PsJN] Length = 568 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 183/572 (31%), Positives = 271/572 (47%), Gaps = 32/572 (5%) Query: 32 AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 I +H + ++AR+ +R V D + + L+P P+ L C++AA + AI Sbjct: 15 EILTRHGLHPVLARLYASRGVCMPDEIET----GLARLVP-PVALKGCEEAAALLADAIQ 69 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM---EKFIN 147 ++++ DYD DGA + A+ +R L +P+R GYG P ++ + + Sbjct: 70 QKRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEIVALAARNAS 129 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 L+ITVD G S D ++ A GIDV+V DHH E A A+VNPN+ Sbjct: 130 GKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNPNQPGCTFPSK 189 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 + GV+F VL+ + LR+ L LLDLVAL TV DVV L G NR V Sbjct: 190 CIAGVGVMFYVLLALRAELRRRGAFNDAFPEPRLDGLLDLVALGTVADVVKLDGNNRVLV 249 Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLI 322 +GL R+ A + R +A +LG+ +GP +NA GR+ + +LG L Sbjct: 250 AQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSDMSLGIECLT 309 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 +DD LA +LD +N+ RR +E+ M +QA + D A+ I + WH G+ Sbjct: 310 TDDIGRAWDLAQQLDTMNRERREIEAGMQQQALEDLSAINPD--GATTITLFNPSWHQGV 367 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 +G++A RLKEKF RPSF + +D GSGRSI GF + + E G++VK G Sbjct: 368 IGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSISGFHLRDALDLISKREPGLIVKFG 427 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLT+ + R F+ + + + DG L + ++ML+ Sbjct: 428 GHAMAAGLTLAAADVPRFTAAFEAVGREWLSEDALSRTVETDGELEDAYFTPQFVEMLD- 486 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 A +G G P PVF+ + S +V HL++ + + AI F T Sbjct: 487 AAVWGQGFPAPVFSGE-FDIASQALVKDKHLKLQLV-RGRQRFNAIWFNHTDT------- 537 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 538 --LPARTTVAYRLASDTWNGVSRVQLIVEHAA 567 >gi|89898634|ref|YP_515744.1| Mg-dependent 5'-3' ssDNA-specific exonuclease [Chlamydophila felis Fe/C-56] gi|89332006|dbj|BAE81599.1| Mg-dependent 5'-3' ssDNA-specific exonuclease [Chlamydophila felis Fe/C-56] Length = 589 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 151/567 (26%), Positives = 256/567 (45%), Gaps = 13/567 (2%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRL 67 V SI WV + I ++ + I A++ V+R ++D +DFL + Sbjct: 5 VNSSIPSPIWVYPKQNPILLSV--IIKELHLHPIAAQIFVSRGFQTVDEVRDFLYVHLSN 62 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 L DP +L D KA R++ A +E IM++GD DVDG + VAL++ FL V + Sbjct: 63 LH-DPELLLDMSKAIERLLLAKERNEHIMVYGDSDVDGISGVALLVEFLKSIDVRVSYCF 121 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 ++ G SL+ K EG L+ITVDCG T+ + QGIDVI+ DHH + Sbjct: 122 LGALLKHSGEPSSLIAKMKEEGISLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGK 181 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 A +NP D L GV F + + L + N L LLDLV L Sbjct: 182 IPHCIATLNPKLKDRAYPNKELTGVGVAFKLARGVLNALEKKNPSIKVD-LKRLLDLVTL 240 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSIN 306 TV DV L+G NR V G+ + GL L + +T+ ++ I P +N Sbjct: 241 GTVTDVGTLLGENRTMVRHGIKEISKGSRLGLHKLCVFSGVKPSEVTSTDIVLKIAPKLN 300 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 + GR+ +++ G LL+++D + + LD +N+ R+ +E+ + K+L I Sbjct: 301 SLGRLADASKGVELLLTEDPEVANDIIQYLDKINKERQKIEADVFHDV-QKILKSNPSIV 359 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + + IV+ WH ++ +++ARL + + +P IS + G G GS R+I F + ++ Sbjct: 360 KQAAIVLSSKEWHSRVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQ 418 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 + V GGH AAG+ + F ++ + +D Sbjct: 419 KC--SSLFVSYGGHDFAAGIIINEDQIEPFRKKFIHLVNSSLKKDKAVITLSLDARAEFD 476 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 ++ L+ ++ P+G GNP P+F +++ +++ HL++ + L+ IAF Sbjct: 477 EIDHDLLSSIDLFEPFGKGNPVPIFYTVVRQVRYPKLLPGNHLKLYI-NHGERNLEGIAF 535 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCV 573 + + L + K + + + Sbjct: 536 GLGDRI--DALKANWNKPLELAYTPRL 560 >gi|294502083|ref|YP_003566148.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber M8] gi|294342067|emb|CBH22732.1| single-stranded-DNA-specific exonuclease RecJ [Salinibacter ruber M8] Length = 785 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 161/591 (27%), Positives = 282/591 (47%), Gaps = 33/591 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W + + + +VA++L + S++ A+ FL+P+ P P L Sbjct: 4 WTTPSSPPVPDGLEDLA---GGNALVAKLLAQLGIQSVEDARPFLDPAAYDPAP-PEALP 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +K RI AI E+++++GD+DVDG S AL++ L + ++P R + +G Sbjct: 60 DLEKGVSRIRSAIERGEQVLVWGDFDVDGQTSTALLVEALRELGADVGFHVPHRERESHG 119 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N +E ++++G +++T D G +S++ ++ A ++G+DV+V DHH + S PA AL+N Sbjct: 120 VNWEHLEGYLDDGVGVVLTCDTGVSSHEPIRKALDRGVDVVVTDHHDLPSRLPPAEALIN 179 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P RL + G L GV + + + Q+ LDLVAL V D+ L Sbjct: 180 PKRLPERHPLGTLPGVGVAYKFVQKLAE--GQNLTEGTRLRPTGYLDLVALGIVADIAVL 237 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 G R + +GL R PGLKA+++ N E++GY IGP +NA GR+G++N Sbjct: 238 RGDTRYLLQQGLEKLRETERPGLKAVMDNANVTREEADEEDIGYRIGPRLNAVGRLGDAN 297 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + LL ++D E +A L+ LN R+L+ + + E A K+ + ++ Q +V+V+ G Sbjct: 298 ISIPLLTTEDPGEARAIADDLEELNDRRKLLTAQVFEAARRKLRWE-PELLQTAVLVLYG 356 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK-------------GIGSGRSIEGFDIG 422 ++W G++G++A RL EK+ +P+ ++ + GS RS+E +I Sbjct: 357 EQWPAGVIGIVAHRLTEKYYKPTILLTSASEEYSRKEGDSEDQEALTRGSARSVEDLNIT 416 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + A +L GGH MAAG+T+ + R + +I+ Sbjct: 417 AAI--ADHADMLQSFGGHPMAAGVTLPKAKIDRFRRLVSRSIVGQKGGEEIVETLQINSY 474 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET 540 L+ + + L D L P+G GN PVFA N ++ + +HL++T +S + Sbjct: 475 LSLEELTLQLADDLRQVAPFGPGNREPVFACRNLQVSEYEKIGSDGSHLKVTVTGPESAS 534 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + L + + + N +RG + QL D+ Sbjct: 535 REVLWWNAGEEDLPSGI-------FDLAVTVSTNVFRGERSLQLTWEDSRV 578 >gi|254455449|ref|ZP_05068878.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter sp. HTCC7211] gi|207082451|gb|EDZ59877.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Pelagibacter sp. HTCC7211] Length = 567 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 172/579 (29%), Positives = 302/579 (52%), Gaps = 20/579 (3%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS-IRLLMP 70 S+SG +W+ + N I Q +IV++++++RN + NPS IR Sbjct: 3 SVSGKKWIE--EKISKNSIEKIKQDFNFSEIVSKLIISRNFNYKEIYSIENPSVIRNEFK 60 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + D A+ + ++I N E I IFGDYDVDG+A+ +L+ +F + YIPDR Sbjct: 61 ND---KDFINASLLLEKSINNKELICIFGDYDVDGSAATSLLAKFFDYIKQPYFFYIPDR 117 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGYGP+ S+ +K I + +L+I VDCGST+ ++ Y ++ I I+IDHH++ Sbjct: 118 ERDGYGPSNSVFKKLILKKPKLVIMVDCGSTANQSIAYLNDKKIKSIIIDHHEIDKPYPK 177 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A ++NP + + + + CA + + L + + ++ +FD+ + L V LA V Sbjct: 178 ANVIINPKKNINNLSKDYYCATTLTYFFLEIFIKKIK------SSFDITNYLIYVLLALV 231 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CDV+PL +NR + + + + N + L E N + +T E+LG+ IGP IN+GGR Sbjct: 232 CDVMPLRKINRYIGLNIIKDFKIKDNVVFRTLYELCNKRNNLTIEDLGFFIGPIINSGGR 291 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +S + + LLIS++ ++ +L LN R+ +E +L ++ + + V Sbjct: 292 ISDSRIAADLLISENPNFVKAKLNELIRLNNIRKDIEQKILN----EINFAKLEKENKDV 347 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 I+ G++G++A+RLK+ F +PS I+ ++ GS RS ++IG ++ V+ Sbjct: 348 IIYYNPTIKEGLIGIIASRLKDYFNKPSIVITSSQE-ILKGSARSTINYNIGNVIKKLVD 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + ++ GGGH MAAG ++++ L DF K + ++ +A+N+ Sbjct: 407 KKLIQNGGGHNMAAGFSMKKNKLKDLEDFMLKDFALKNKKTSLVNT--YEAEISPNAINM 464 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 ++ + GPYG NP P F N K+ ++ N H+ + F+ + + +++I F Sbjct: 465 DFVNEINKIGPYGNRNPIPTFLIKNLKITKVKTFNEKHINVIFKPKVGKFIKSICFNSLN 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 T LG++L+ + K +HV + NYW +K QL + D Sbjct: 525 TKLGKYLLTYK-KNVHVIAQIHQNYWNNNKVLQLNIKDL 562 >gi|71065294|ref|YP_264021.1| exonuclease RecJ [Psychrobacter arcticus 273-4] gi|71038279|gb|AAZ18587.1| exonuclease RecJ [Psychrobacter arcticus 273-4] Length = 608 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 176/606 (29%), Positives = 265/606 (43%), Gaps = 53/606 (8%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82 E + + +AR+ R + D L + L+P L +A Sbjct: 14 DELPAALQPLAAQ---SLTLARLYAGRGILQPDE----LEIQLASLLPA-ERLKGVTEAV 65 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 R + AI ++I+I GD+D DGA S ALMMR L+ + +PDR GYG P ++ Sbjct: 66 RLLDVAIDEGQRILIVGDFDCDGATSTALMMRALTAMGAKVDFLVPDRFKYGYGLTPEIV 125 Query: 143 EKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 E I Q+I+TVD G +S++ + A GI VI+ DHH E PA A+VNPN+LD Sbjct: 126 ELGIETYQPQMIVTVDNGISSHEGVARAQADGITVIITDHHLTTKETPPAEAVVNPNQLD 185 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 L GV F VL + ++ R+ + LDLVAL T+ DV L NR Sbjct: 186 CNFASKALVGVGVAFYVLGRLAKLRREAG--KSTVQVSQYLDLVALGTIADVGVLDKNNR 243 Query: 262 AYVVKGLMVAR--RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 V GL R R L L + + A++ G+++GP INA GR+ +G Sbjct: 244 ILVHHGLAAIRQGRGSLGILALLEQAGRDPKKLQAQDFGFVLGPRINAAGRMDNMRIGIE 303 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV--------------------- 358 L++DD + LA +L+ LN+ RR +E M QA+ V Sbjct: 304 CLLADDWATAQRLAQELEQLNRTRRHVEGEMRAQADDIVQALAAADAGIEANADESGDII 363 Query: 359 --LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF------EEDGKGI 410 IV+ D WH G++G++A RLKE PS + +D Sbjct: 364 VQHKLEKKTTNTRSIVLYQDDWHQGVIGIVAGRLKESHYLPSIVFAPADTKRIGDDDAIK 423 Query: 411 GSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468 GS RSI G I + ++ GGHAMAAGLT++R NF F + Sbjct: 424 GSARSITGVHIRDAIEQVAESHPDLISHFGGHAMAAGLTLKRGNFDAFVAAFNDVLA-QM 482 Query: 469 PALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH 528 + DG L A ++ + L + +G G P+F ++ + +V+ H Sbjct: 483 DDEVFAEKKFTDGPLQAGDFSLWFAEYLAESSIWGHGFAPPIFDG-VFEVLNFKVLKDKH 541 Query: 529 LQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 L+++ D + ++AI F + R ++HV L +N W G + QL + Sbjct: 542 LKLSLRYPDVQYPIEAIQFNFDSSAW-----DYRAGKVHVLFELNINEWNGKQSLQLMIK 596 Query: 588 DASPVE 593 D + V+ Sbjct: 597 DLALVK 602 >gi|59800857|ref|YP_207569.1| hypothetical protein NGO0414 [Neisseria gonorrhoeae FA 1090] gi|240013732|ref|ZP_04720645.1| hypothetical protein NgonD_03626 [Neisseria gonorrhoeae DGI18] gi|240112525|ref|ZP_04727015.1| hypothetical protein NgonM_02901 [Neisseria gonorrhoeae MS11] gi|240120802|ref|ZP_04733764.1| hypothetical protein NgonPI_03304 [Neisseria gonorrhoeae PID24-1] gi|268598594|ref|ZP_06132761.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae MS11] gi|59717752|gb|AAW89157.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae FA 1090] gi|268582725|gb|EEZ47401.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae MS11] Length = 566 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGIKEPNLGGLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML A Q V D +H G+VG++A+RLK+ Sbjct: 317 AARLNNLNIERREIEQSMLRDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + + DG L A + + L + +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPACDITLEQAQNL-ACHVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAA 566 >gi|148652599|ref|YP_001279692.1| single-stranded-DNA-specific exonuclease RecJ [Psychrobacter sp. PRwf-1] gi|148571683|gb|ABQ93742.1| exonuclease RecJ [Psychrobacter sp. PRwf-1] Length = 611 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 173/594 (29%), Positives = 269/594 (45%), Gaps = 54/594 (9%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 + R+ + R + D D+ + L+P L+D D+A + +AI +I+I GD Sbjct: 28 PTLTRLFLARGIQSDQDLDY---GLSALLPA-QGLSDVDEAVTLMDEAIEAQRRILIVGD 83 Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI-NEGAQLIITVDCG 159 +D DGA S ALMMR LS + +PDR GYG P +++ I +IITVD G Sbjct: 84 FDCDGATSTALMMRILSQMGAVVDFVVPDRFKYGYGLTPEIVQLGIEQYQPDMIITVDNG 143 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + A GI VI+ DHH + A+A+VNPN+L L GV F +L Sbjct: 144 ISSHEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVNPNQLGCSFESKALVGVGVAFYLL 203 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPG 278 + + R+ + LDLVAL T+ DV L NR V GL R + + G Sbjct: 204 GRLAKYRREAG--RSTAQVSRYLDLVALGTIADVGVLDHNNRILVNHGLAAIRAGRCSLG 261 Query: 279 LKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 + AL+E + ++ G++IGP INA GR+ +G L++DD + + LA +LD Sbjct: 262 ILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRIGIECLMADDMSDAKRLAFELD 321 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCD-----------------------------DIQQA 368 LN+ RR +E M EQA+ + D Q Sbjct: 322 KLNKERRYVEGEMREQADEILRQLQPNSDRSQAQTTDEQSDDSDDSLKQQAESFTDKAQP 381 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF------EEDGKGIGSGRSIEGFDIG 422 +++ D WH G++G++A RLKE RP+ + + GS RSI G I Sbjct: 382 RSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDTQLDGQDAIKGSARSIPGIHIR 441 Query: 423 KMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 + E + GGHAMAAGLT++R +F + F+ + V A + D Sbjct: 442 DAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEAFELQMQS-VEASVFEEQQFTD 500 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-E 539 G L A ++ ++ L +G G P F + R++ HL+++ + Sbjct: 501 GQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDG-VFDVVQARILKDKHLKLSLKYPGVMY 559 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + AI F R +++HV L +N W+G++ QL V D + + Sbjct: 560 PIDAIWFNYDPKKW-----DYRAQQVHVLFELSINEWQGNQNIQLMVKDVAVTQ 608 >gi|320107076|ref|YP_004182666.1| single-stranded-DNA-specific exonuclease RecJ [Terriglobus saanensis SP1PR4] gi|319925597|gb|ADV82672.1| single-stranded-DNA-specific exonuclease RecJ [Terriglobus saanensis SP1PR4] Length = 616 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 174/613 (28%), Positives = 287/613 (46%), Gaps = 41/613 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RWV I +P VA +LV R +S + A FL PS+ L DP ++ Sbjct: 6 RWVLPEVDPD--AVAEIASSCTLPLPVAAMLVRRGISSAEEALRFLQPSLSQLH-DPFLM 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-----ANMYIPDR 130 +A R+++A+ + E I+I+GDYDVDG + L+ + + +IP R Sbjct: 63 LGMHEAVDRVLEAVLHREPILIYGDYDVDGTTATVLLKTAIDRITPKGTPSLVRFHIPHR 122 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 I++GYG S++ +G +L+I+VD G ++ A A QG+D+IV DHH +P Sbjct: 123 ILEGYGMQTSILAGAAEQGIRLVISVDTGIRAFAAADEARAQGMDLIVTDHHLPDDSGVP 182 Query: 191 A-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----------FDLL 239 A++NPN+ +C AGV F + + + D P L Sbjct: 183 EAVAVLNPNQPGCPYPFKAICGAGVAFKLAHALLLSVAADPNDPTFNPISREALEEKFLP 242 Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-------SPI 292 S L L+A+AT+ D VPL G NRA V GL RR GL+AL++ Sbjct: 243 SFLKLLAIATIADSVPLNGENRAIVALGLEQLRRPNQAGLRALMQLSGFELENGSVIKSF 302 Query: 293 TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352 A ++ + I P INA GR+ + +L ++ D E + LA KL LN +RR E+ +LE Sbjct: 303 NARDIAFRIAPRINAAGRMDTATDVVQLFLTRDPAEAQTLAEKLHALNTDRREAEARILE 362 Query: 353 QAEAKV---LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + EA++ D++ V+V++G+ WH G+VG+LA+R+ E+ GRP+ ++ EDG+ Sbjct: 363 EVEAQIAKLRETDADLESHGVVVLDGEGWHRGVVGILASRVVERTGRPALVLA-HEDGQA 421 Query: 410 IGSGRSIEGFDIGKMVSFAVEEG-ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468 GSGRS+ GF + ++F E + + GGHA A G ++ L ++ + Sbjct: 422 HGSGRSVAGFHLLDAITFVDNESAVFTRFGGHAFAVGFSLPSNVVPDLKLRLSAYSVPRL 481 Query: 469 PALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLA 527 + P +D + + ++ L+ + P+G NP PVFA + I+ + Sbjct: 482 TPSVLAPTILLDSEVRLADIDANLLAAVRKCEPFGNDNPEPVFAAFGVTILDPIKTLKEK 541 Query: 528 HLQMTFESQDSET-LQAIAFRVYGTPLG--EFLMQSRGKRMHVTGHLCVN---YWRGSKR 581 H ++ +D A+ + + E L ++G ++ + N + Sbjct: 542 HAKLRVRQEDGGLAFAALCWSRSDSWPERLEKLGVTQGSKVDIAFRPRENSHPDFG--TA 599 Query: 582 CQLRVLDASPVEG 594 L + D +G Sbjct: 600 IDLELCDIRLTDG 612 >gi|148270376|ref|YP_001244836.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga petrophila RKU-1] gi|147735920|gb|ABQ47260.1| single-stranded-DNA-specific exonuclease RecJ [Thermotoga petrophila RKU-1] Length = 955 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 150/559 (26%), Positives = 264/559 (47%), Gaps = 22/559 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W Q I+Q + +I +R+LVNR + + + FL + +P + Sbjct: 2 KKWEL--SQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFINESH-QHNPFL 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +KA +++A +E ++I GDYDVDG S ++ FL ++YIP RI +G Sbjct: 59 FNDMEKAVETLLEARSRNELVLIHGDYDVDGITSTVILKEFLEENGWRVDVYIPHRIEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + F ++TVDCG T+ D++ A G+ VI+ DHH+V + PA A+ Sbjct: 119 YGIQLENILTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIITDHHEVNGDLPPADAI 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + L GV + ++ I + L+LVAL TV D+V Sbjct: 179 VNPKVPGENYPFRDLAGVGVTYKLVQAISEAIN-------YPHPERFLELVALGTVADMV 231 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L+ NR +V KG+ + GLK L+ER+ + + +T+ ++ Y I P +NA GR+G + Sbjct: 232 SLLDENRYFVKKGIELLSNTKRVGLKRLLERLGLKN-LTSHDISYKIAPRLNAAGRMGSA 290 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 N LLI +D + + + +L LN RR E A+ ++A + + +D+ + VIVV Sbjct: 291 NDAFNLLIMNDPAKADGVVDRLMELNSIRRKTEWAIYKEAIEII--ETNDLWKDPVIVVA 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + WH G++G++AA+L ++ +P +S +E GS RS G+DI + + + I Sbjct: 349 KENWHVGVIGIVAAKLANRYEKPVAVVSLDEK-IAKGSIRSYNGYDIMNIFNEDIL-KIF 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH+ A G +++R ++ + + +D + ++ I+ Sbjct: 407 EEIGGHSSAVGFSLKRDQLESFREYIRN-----ISLEGREEKVIVDAEVRMEDIDDRFIE 461 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553 ++ P+G GNP PV F + ++ I + ++ + L+ + + Sbjct: 462 DIKKLMPFGQGNPEPVLLFKDVLIEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSS 521 Query: 554 GEFLMQSRGKRMHVTGHLC 572 + R V +L Sbjct: 522 SLSTLPVTPTRGDVVVNLR 540 >gi|66768654|ref|YP_243416.1| putative single stranded DNA exonuclease [Xanthomonas campestris pv. campestris str. 8004] gi|7228156|emb|CAB77039.1| putative single stranded DNA exonuclease [Xanthomonas campestris] gi|66573986|gb|AAY49396.1| putative single stranded DNA exonuclease [Xanthomonas campestris pv. campestris str. 8004] Length = 582 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 172/568 (30%), Positives = 271/568 (47%), Gaps = 29/568 (5%) Query: 41 DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R V + A +P + L+ P +L + AA + AI +I++ G Sbjct: 24 PLLRRIYAARGVVDVHGA----HPRLGQLL-SPELLHNSRVAAELLADAIAAQRRILVVG 78 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA + A+ +R L + + +P+R+V GYG +P+L+++ L++TVD Sbjct: 79 DFDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELAALQPDLLVTVDH 138 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G + + A +G V+V DHH PA A+V+PN + D L GV+F V Sbjct: 139 GIACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLVQDSFPSKTLAGVGVIFYV 198 Query: 219 LVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG- 275 L+ + +LR DL LLDLVA+ TV D+VPL NRA V GL R Sbjct: 199 LLALRGVLRARGAFAERAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLRDGKG 258 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 GL+ALI+ + ++A ++G+ + P +NA GR+ + LG LL+ +D +A Sbjct: 259 CIGLRALIDASGRDAARLSASDIGFALAPRLNAAGRLEDMALGIELLLCEDWSRAREIAG 318 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK+ Sbjct: 319 LLEEINAERRAVQQLMTDDAEQAVTKVMLAADGALPMAACLFDPEWHPGVIGLVASKLKD 378 Query: 393 KFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 + RP A++ E G GS RSI G I +++ A G++ K GGHAMAAGL++ Sbjct: 379 RLHRPVIALAPAEPGSDQLRGSARSIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSL 438 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 E FQ +V A + DG L A ++ + L +AGP+G G P Sbjct: 439 EHRALAAFEQAFQTQVQAMVDASLLQAELHSDGELAAHELDHLHAEALRAAGPWGQGFPE 498 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDS----ETLQAIAFRVYGTPLGEFLMQSRGKR 564 P+F ++ R++ HL++T E L AI F + + Sbjct: 499 PLFDGQ-FEVLQWRLLKERHLKLTLRCAGRAGRAEPLNAIHFNGWRG-------SEPART 550 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L + +RG QL V P Sbjct: 551 VRIAYRLVGDDYRGGTAVQLIVEHCEPA 578 >gi|152989907|ref|YP_001355629.1| single-strand DNA-specific exonuclease [Nitratiruptor sp. SB155-2] gi|151421768|dbj|BAF69272.1| single-strand DNA-specific exonuclease [Nitratiruptor sp. SB155-2] Length = 522 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 166/546 (30%), Positives = 262/546 (47%), Gaps = 36/546 (6%) Query: 50 RNVSIDYAKDFLNPSIRL------LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 R ++ L + +P P + D KA+ RI AI N EKI I GDYDV Sbjct: 2 RVLTKQDIFTILQERFKEGFVKLSSLPHPSSMKDMQKASLRIADAIKNGEKIAIVGDYDV 61 Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 DG S ALM F S IP+R GYG +P ++E+ LIITVD G +++ Sbjct: 62 DGVVSTALMKEFFSLIDYPIEAKIPNRFRHGYGLSPKIIEEL--GDVDLIITVDNGISAH 119 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 +A +GID+I+ DHH PAYA+VNP + +C A V + ++ + Sbjct: 120 EAATLCQEKGIDLIITDHHTPPQTLPPAYAIVNPKQEQCSFAYPEICGAQVAWFLIGQLK 179 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + L D D+ LD++A+A + DV+PL +NR+ V GL + R P + L Sbjct: 180 QDLGLD------VDMKQFLDILAVAIIADVMPLRHINRSLVQAGLKMFERSERPAIAYLR 233 Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 + +E++G+ I P IN+ GR+ ++NL + L + D + + +L LN R Sbjct: 234 SVLK-KHTFHSEDIGFTIAPIINSAGRMEDANLALQFLNAKDFFDASVYYARLLSLNMQR 292 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 + E +L+++ +V + VIVV G+ W+ G+VG++A+RL ++F RP+ ++ Sbjct: 293 KEEERRVLQESLEQVGDE-------RVIVVAGEDWNEGVVGIVASRLVDRFSRPAIVLTT 345 Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 +++G+ GSGRS+ D+ K++ L + GGH AAGL +++ + DF Sbjct: 346 DKNGELKGSGRSVGAVDLYKLLE--GSSQYLTRFGGHKKAAGLGLKKEHLQPFKDFINLL 403 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 A +P + G L S ++ LID+LES PYG NP P F + ++ R Sbjct: 404 AQK-IPQEDFIDTSTVLGELPFSEIDWELIDILESFAPYGESNPMPKFFASHVEVLEKRG 462 Query: 524 VNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 V HL MT Q+ +AI F + R+ + N + S Sbjct: 463 VGEDGRHLLMTLR-QNGNIFKAIHF--------HNETDLQNDRIDIVYQPVKNIYNNSIY 513 Query: 582 CQLRVL 587 QL + Sbjct: 514 IQLHIK 519 >gi|297588488|ref|ZP_06947131.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna ATCC 53516] gi|297573861|gb|EFH92582.1| single-stranded-DNA-specific exonuclease RecJ [Finegoldia magna ATCC 53516] Length = 580 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 157/594 (26%), Positives = 275/594 (46%), Gaps = 36/594 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + +Q++ I ++A++L+NRN++ + FLNP DP ++ Sbjct: 3 KWLINNRGNNFSEV---SQRNNIHPLIAKILLNRNIT--DFQTFLNPIAENSYHDPFLMK 57 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA I+ AI N + I I GDYD DG +S ++ L + + + IP+R+ DGYG Sbjct: 58 DMDKAVDIIINAIENDQNIRIVGDYDQDGNSSTMTLLDGLGYFTDKLSYDIPNRMTDGYG 117 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIPA 191 + ++++K I + LIIT D G ++ + +YA G+ +IV DHHQ K A Sbjct: 118 ISFNIIDKCIEDNIDLIITCDNGISAIEQCEYAKQNGLKIIVTDHHQTIKHDGKEIIPNA 177 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP + LC AGV + ++ I + +LL VA+ TVC Sbjct: 178 DAVINPQQQSCKYPFKSLCGAGVCYKLIQAINVKKG-----YGMLECENLLQYVAMGTVC 232 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D+V L NR +V KGL N GLK LIE I + + +LG++IGP INA GR+ Sbjct: 233 DIVDLKDENRYFVTKGLQEINNTDNYGLKCLIEMTGIRNGVNVYSLGFIIGPCINAAGRL 292 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + LG L ++ +E A L LN+ R+ + +A + + ++ ++ Sbjct: 293 DTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEEGFNKAVEII--ENTELINDDIL 350 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430 + + H + G++A R+KEK+ +P+ ++ E+ GSGRSI +DI F Sbjct: 351 ICNVEGIHESVCGIIAGRIKEKYNKPTLILTKSENENILKGSGRSISEYDI--FKEFDEF 408 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + V GGH MA GL++E + ++ + ID ++ Sbjct: 409 REMFVSFGGHPMACGLSIEEDKLDEFRTKVNQ--NSKLTEEDFVKKILIDSSFYVDKIDF 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVY 549 LI+ ++ P+G NP P+ + ++ +++ ++ ++++T+ AI F Sbjct: 467 DLIEEIDRLRPFGKDNPRPILGDRDLEIIFAKMIGKNKNVLKLKLLKNNKTIDAILFSEA 526 Query: 550 GTPLGEFLMQ-------------SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L + + + + + +N + K QL ++D Sbjct: 527 IDKYNYLLEKFGENVMSQLENNIACNANIDIIYYPEINDFNNVKNIQLNLIDLR 580 >gi|317056334|ref|YP_004104801.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus 7] gi|315448603|gb|ADU22167.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus albus 7] Length = 678 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 155/576 (26%), Positives = 275/576 (47%), Gaps = 26/576 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 F+W G+ + +K + +V +L R + + F + DP++ Sbjct: 2 FKWRI--GKPDPEKVEYFLKKTDLNRLVLEILSARGIDDEDSIVSFFT---EQELEDPMM 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA I QA+ E I ++GDYD DG S +++ +L N YIP+R G Sbjct: 57 IKDMDKAVETIEQAVDAYELICVYGDYDCDGITSTSILFNYLESMGANVMYYIPER-EAG 115 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +E+ + +LI+TVD G +S + + GI +++ DHHQV E A A+ Sbjct: 116 YGMNIAAIEELAEKDVKLIVTVDNGISSVEEAKRCRELGIKLVITDHHQVGDELPEAEAI 175 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P+R D S LC AGV + + + + + DL A+ TV D+V Sbjct: 176 VDPHRPDCPSSFKDLCGAGVALKLCAAL-------DGGSYDAAVEQYSDLCAIGTVADIV 228 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 PL G NR V G N GL L++++ I I ++++G+ IGP INA GR G Sbjct: 229 PLKGENRTLVKAGFRYLPNTENAGLGILLDKLKIDRKRIVSDHIGFRIGPVINASGRFGS 288 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + ++S+D ++ E + LN R+ E +++ E + + VIV+ Sbjct: 289 PLTAVKAILSEDMEDAESYVDTMITLNSQRKKCEQEIMKDIEDYI-RNDPKVLDHRVIVL 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G WH G++G++A+++ +++ +P+ IS E+ G GS RS++G +I +++ E + Sbjct: 348 AGKGWHHGVIGIVASKILDRYSKPTIIISIEDGGMARGSARSVKGLNIHTCLTYCAE--L 405 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGH A G +++ + + + +++ + D VL + +++ ++ Sbjct: 406 LTKFGGHECAGGFSLKEEDISKFTEKVYEYSAGLEKPA--VKTLYADKVLMPADLDVEMV 463 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTP 552 L P G GNP P+FA ++ I + H +++F + A+ F T Sbjct: 464 KGLSVLEPIGEGNPRPLFAVLGARVNEIIPLKDNAHTKLSFTYGRTNAY-ALIFGQDPTK 522 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 L ++G + + L +N + + +RV+D Sbjct: 523 ----LCFAKGDLIDMMVELDINVFNDRESVTVRVVD 554 >gi|313633152|gb|EFS00038.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri FSL N1-067] Length = 718 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 165/529 (31%), Positives = 264/529 (49%), Gaps = 26/529 (4%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + D A RI QAI ++I+++GDYD DG S+A++M+ L H NA+ YIP+R +GYG Sbjct: 2 EMDVAVARIKQAIELEQQILVYGDYDADGVTSIAVLMKTLRHLGANADFYIPNRFTEGYG 61 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G LIITVD G + + + +A G+DVIV DHH+ + A A+++ Sbjct: 62 PNVAAFDMAKKQGIDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAVAVIH 121 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + L GV + + + L ++ LLDLVA+ TV D+V L Sbjct: 122 PKHPNSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVADLVSL 170 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+G ++ Sbjct: 171 TDENRLLVQLGLRQLREGANIGLGVLAKKASLKLEEATEETIGFGLAPRLNAIGRLGPAD 230 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + LL+++D +E LA ++D N+ R+ + + A + + V+VV G Sbjct: 231 PAADLLLTEDPEEALFLAEEIDDANKERKQIVLDTTKLAMEAIEAK---DNLGKVLVVSG 287 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + W+ GI+G++A++L + RP+ + + G GSGRSIE F + + ++ Sbjct: 288 EGWNTGILGIVASKLVSVYSRPAIVLGIDSVTGIAKGSGRSIESFHLYQA--LDKHRDLM 345 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGH MAAGLT+ N L Q+ A ++ P KI+ +N + V ++ I Sbjct: 346 TAFGGHPMAAGLTLPAENLAELELKLQEEAS-LLAEEDFRPALKIEERINLADVTVSFIA 404 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551 LE P+G NP P+F L+ + + HL+ E+++S+ TL AI F V Sbjct: 405 QLEKLAPFGMDNPKPIFLLEGMHLKGTKRIGADKTHLKTMLEAKESDATLDAIGFGVGDL 464 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G L +N W K+ QLR++D F + Sbjct: 465 ----VEKISPSADVDVVGELSINEWNNIKKPQLRMMDVRIPHWQLFDVR 509 >gi|160879033|ref|YP_001558001.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium phytofermentans ISDg] gi|160427699|gb|ABX41262.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium phytofermentans ISDg] Length = 592 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 171/599 (28%), Positives = 290/599 (48%), Gaps = 45/599 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 +W+ + A+ + AI ++AR++VNR +S + + +L+ + M L++ Sbjct: 4 KWMLEAKRADF---EALANRLAISPVLARIIVNRGLSEEDEMQRYLSCDLTE-MYSGLMM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 ++A I+ A+ ++ I I D+D DG S + L +Y PDRI +GY Sbjct: 60 KGMEQARNLIITAVEENQLIAIGTDFDNDGILSGHSLSTALKRIGGRVVVYAPDRISEGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N ++ + G++LIIT D G +DA+ YA G+ V+V DHH+V EE Sbjct: 120 GLNRRIVLEAYEAGSRLIITCDNGIAVFDAIDYAKELGMTVVVTDHHEVAFEEDENGSRT 179 Query: 189 ---IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 A +VNP + LC AGVV+ ++ L+Y +L LL+ + Sbjct: 180 FLLPNADVVVNPKQEGCPYPFKGLCGAGVVYKLIELLYEY-----YSVPKEELYDLLEFI 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATV DV+ L+ NR V GL + + N G++ALIE I+A ++G++IGP Sbjct: 235 AIATVADVMDLVSENRLIVKHGLKLLSQSKNLGIRALIEECGLEQKRISAYHIGFVIGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 NA GR+ + LL + ++E + LA+ L LN +R+ M +EQA ++ + D Sbjct: 295 FNAAGRLDTVAVALDLLDAKTTEEAKQLAVSLKKLNDSRKDMTLQGVEQAIERI--ETSD 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V+VV+ H +VG++A RL+E++ +P+ E G GSGRSIE +++ Sbjct: 353 LIHDKVLVVKLRDTHESLVGIIAGRLRERYNKPALVFVDVEQGV-KGSGRSIESYNM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + +L K GGH MAAGL+++ N L + + + P+ +ID L Sbjct: 410 EELLKCKDLLTKFGGHPMAAGLSLKAENLETLRARLNQ--NTTLSEEDLIPIVRIDIPLP 467 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 +N A ++ LE P+G GN PVFA + K++ R++ L++ + + + Sbjct: 468 IGYLNEAFLEELEKLEPFGKGNIKPVFAEQHFKIRQARILGKNQNVLKLNIINSEGFAMD 527 Query: 543 AIAFRVYGTPLGEFLMQSRGK------------RMHVT--GHLCVNYWRGSKRCQLRVL 587 A+ F T EF GK + + + +N + G++ Q+ + Sbjct: 528 ALYFGDI-TEFNEFAEMEYGKEEVRKMYLGQYNEVDLAFTYYPTLNEYMGNRTVQVIIQ 585 >gi|325203913|gb|ADY99366.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis M01-240355] Length = 566 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 171/564 (30%), Positives = 264/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R+V + L+ + L+P LT+C+ AA R+ AI EKI+I Sbjct: 22 GADPLIARLCASRDV---QSPAELDDKLAALLPY-QSLTNCEAAAGRLADAIERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMDAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGIKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q A + V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQTA--LAVYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 543 YRPVANEWRNNLELQLYIDYWEAV 566 >gi|237736844|ref|ZP_04567325.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium mortiferum ATCC 9817] gi|229420706|gb|EEO35753.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium mortiferum ATCC 9817] Length = 853 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 155/592 (26%), Positives = 288/592 (48%), Gaps = 30/592 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 RW+ N I + +L NR++ + F+N S+ + PL+L Sbjct: 5 RWIYKENSFSQNT------NLNIDRDILNLLYNRDIRDEEKIYKFINTSLDNIH-SPLLL 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+A RI+QA N E++ I+GDYDVDG S +L LS + YIP R +GY Sbjct: 58 KDVDRAVERILQAKENKEEVWIYGDYDVDGITSTSLCYLALSEIGITPRYYIPLR-DEGY 116 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N M+ ++G ++IITVDCG +++ ++YA + G+++IV DHH++ + PAYA++ Sbjct: 117 GLNKEAMDYIKSQGGKVIITVDCGISAHPEIEYANSLGLEIIVTDHHEINNGNPPAYAVI 176 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP R D+ ++ G F+++ ++ L + +L LD+VA+ TV D+VP Sbjct: 177 NPKREDNQFPFKYMAGVGTAFMLIYALFDKLEKK------EELYKYLDIVAIGTVADIVP 230 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIG 312 L+ NR + G+ + G+ LI+++ ++G++I P NA GR+ Sbjct: 231 LLEENRIFTKFGMEQLNKSHWLGISMLIKKIFEDYKTKKFNTYDIGFIIAPIFNAAGRLE 290 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I D + + +L N R+ ++ +LE+A K+ + + + + SV+V Sbjct: 291 DAKRAVELFIEKDHRVCSEIINELLNNNTERKEIQEMILERALFKI--ENEKLFEDSVLV 348 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V + +H G++G++A+++ +++ +P+ + ++ S RSIEGF++ + + + Sbjct: 349 VAEEGFHHGVIGIVASKILDRYYKPTIIMEIKPDERIATASCRSIEGFNM--IEALNTMK 406 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + VK GGHA AAG +++ N ++A +P K+D + A ++ Sbjct: 407 ELFVKYGGHAGAAGFSIKIENINEFSKRINEYAKENIPESSLIKPVKLDITIPAYKISYD 466 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVY 549 ID + P+G GNP+P+FA N ++ +R + H + E + F Sbjct: 467 FIDKISLLEPFGFGNPSPLFALNNCEISGVRPIGKEKNHTMFNVRKDNLEIRNCVWFSSD 526 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGHHFAKK 600 F + + L + ++ ++ V D P + + ++ Sbjct: 527 DV----FNEMASISHADIAFKLKLETFKDKYMYKMYVEDMQLPRKEENIYER 574 >gi|317050969|ref|YP_004112085.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurispirillum indicum S5] gi|316946053|gb|ADU65529.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurispirillum indicum S5] Length = 558 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 160/540 (29%), Positives = 264/540 (48%), Gaps = 26/540 (4%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 D FL + L DP +L D KA + AI S I+++GD+DVDG A+++ Sbjct: 36 DDDRNLFLQADLSHL-ADPFLLRDMAKAVELLDAAIQQSLPILVYGDFDVDGTVGTAMLV 94 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG 173 RFL + +IP R +GYG N + +E ++ L+I+VDCG T+ D + + + G Sbjct: 95 RFLRELGARVDYFIPSRFTEGYGLNRAALE-SRSQDFHLLISVDCGITAIDEVAFLKSLG 153 Query: 174 IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP 233 VI+ DHH ++ PA A+V+P+R D +C A VV ++ + R + + Sbjct: 154 KQVIITDHHLPGNQLPPADAIVDPHRPDCPYPHA-ICGAAVVLKLITALRRTIGRAE--- 209 Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293 L L L +LATV DV+ + NR V +GL + + GL+ L E I Sbjct: 210 --LSLAPYLPLASLATVADVMEIRHENRVLVKQGLRLFADKAVTGLRLLCEVAGIDPGKM 267 Query: 294 A-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE--LEMLAMKLDVLNQNRRLMESAM 350 + LG+ +GP +NA GR+ + L + D+ Q +A +LD LN+ R+ +E +M Sbjct: 268 SVYGLGFQLGPRVNAAGRMENARDSVELFLLDEPQREQALSIARQLDDLNRQRQEVEQSM 327 Query: 351 LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI 410 +E+A ++ Q + + I+V W+ G++G++A RLK ++ RP S EDG Sbjct: 328 VEEAREQI--QRHKLHEQRAIIVGSRGWNEGVIGIVAGRLKSRYHRPCIVYSQLEDGTLK 385 Query: 411 GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 S RS++G D+ + LVK GGHAMAAGL +++ N K P Sbjct: 386 ASCRSVDGIDLHHELQQC--AHHLVKFGGHAMAAGLQIQQSNLEAFRQNLLKNLSR-FPE 442 Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAH 528 + +D L A +++ + P+G GNP P+F+ + + +H Sbjct: 443 DLFKAKCTVDACLPAPLLSMDTAHAINRLEPFGNGNPEPLFSG-DFTVLDSYQCGREGSH 501 Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 ++T + + + QAIAF L + GK++ + L VN++RG ++++ D Sbjct: 502 CRLTIQDSEGKRHQAIAF-------SNNLQAAVGKQVKLCFKLRVNHFRGKDSLEMQIED 554 >gi|329118639|ref|ZP_08247343.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria bacilliformis ATCC BAA-1200] gi|327465374|gb|EGF11655.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria bacilliformis ATCC BAA-1200] Length = 567 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 168/564 (29%), Positives = 258/564 (45%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + AR+ R V L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 23 GADPLTARLCAARGVVSP---GELDDKLAALLPY-QTLTNCEAAASRLADAVQKKEKILI 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L + +P+R GYG P L E +G L++TVD Sbjct: 79 VADYDADGATACSVGMAGLGAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLVTVD 138 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++E+P +VNPN+ L GV+F Sbjct: 139 NGIASIAGVARAQALGLDVIVTDHH-LPADEVPNCIIVNPNQRGCGFASKSLAGVGVIFY 197 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 198 VLMALRAELRWRNYFSDGLKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 257 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL + ++G+ +GP INA GR+ + +LG L++ E + L Sbjct: 258 KMRPGIRALFDVARRDWKKAQPFDMGFALGPRINAAGRLDDMSLGIACLLAPGEAEAQTL 317 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A D Q V D +H G+VG++A+RLK+ Sbjct: 318 AEQLNGLNIERREIEQSMLQDALNAFPDTLPDGQTTLV--AYRDDFHQGVVGIVASRLKD 375 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 376 RFYRPAIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPNLILKFGGHAMAAGLSILE 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 436 HNIPAFQTAFEEAVREMVREEDLSQTFITDGSLAAGDITLEQAQNLAR-QVWGQGFAPPS 494 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ + + H + + +D +A+ +R + + Sbjct: 495 F-TDLFRVVRQQSLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 543 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + V Sbjct: 544 YRPVANEWRNNLELQLYIDYWEAV 567 >gi|261363775|ref|ZP_05976658.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria mucosa ATCC 25996] gi|288568354|gb|EFC89914.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria mucosa ATCC 25996] Length = 566 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 261/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R+V + L+ + L+P LT C+ AARR+ AI EKI+I Sbjct: 22 GADPLIARLCASRDV---QSPAELDDKLAGLLPY-QSLTHCEAAARRLADAIQRKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ + +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRDYFSDGLKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQTL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNDLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR QL + Sbjct: 543 YRPVANEWRNQMELQLYIDYWEAA 566 >gi|319791975|ref|YP_004153615.1| single-strandeD-DNA-specific exonuclease recj [Variovorax paradoxus EPS] gi|315594438|gb|ADU35504.1| single-stranded-DNA-specific exonuclease RecJ [Variovorax paradoxus EPS] Length = 573 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 174/588 (29%), Positives = 267/588 (45%), Gaps = 33/588 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A+ ++ + ++AR+ R V AKD L+ + L+ P L Sbjct: 2 KIIARDIPPRTVWAL-EQAGVHPLLARLFAARGV---MAKDELDDGLARLLL-PDTLRGT 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137 +AA + A+ +++ I DYD DGA + A+ +R L + +PDR+VDGYG Sbjct: 57 REAAVLLADAMAQDKRLCIVADYDCDGATACAVGVRGLRLLGAKHVSYLVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P + E+ + GA ++ITVD G S + + A +G+ V+V DHH E A LVNP Sbjct: 117 TPPIAERVADSGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPIADVLVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVP 255 N+ + GV+F VL+ + LR L +LL LVAL TV DVV Sbjct: 177 NQPGCDFESKSIAGVGVMFYVLLALRSELRARGVFDVASQPKLDALLPLVALGTVADVVK 236 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L NR V +GL R P A +S T + G+ +GP INA GR+ + Sbjct: 237 LDANNRRLVAQGLRRIRAGAMPAGVAALFKAAGRTASVATTFDFGFALGPRINAAGRLAD 296 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI-----QQA 368 LG L++DD+ + LA LD +N+ RR +E M +QA + Sbjct: 297 MTLGIECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFATDGEGIEAPP 356 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGKM 424 I V +H G+VG++A+R+K++F RP+F + + + GSGRSI GF + Sbjct: 357 PAISVFDANFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDA 416 Query: 425 VSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + G+L++ GGHAMAAG TV R +F + A + A T + DG Sbjct: 417 LDLVAKRHPGVLLRFGGHAMAAGCTVAREHFETFEQALAQVAGEWLAASALTRQIETDGP 476 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + + I L+D L +G G P F ++ S R+V HL + Q + + Sbjct: 477 IAREYMRIDLVDTLHR-EVWGQGFAPPTF-SEEVEVVSQRLVGEKHLALKLRHQ-GQPID 533 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AI F ++ + L + W+G +R + V A Sbjct: 534 AIWFSHTE---------PLPPKVKLAFRLDADEWQGVRRLRFLVEGAE 572 >gi|310778288|ref|YP_003966621.1| exonuclease RecJ [Ilyobacter polytropus DSM 2926] gi|309747611|gb|ADO82273.1| exonuclease RecJ [Ilyobacter polytropus DSM 2926] Length = 859 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 153/588 (26%), Positives = 273/588 (46%), Gaps = 27/588 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 + +W+ N +L I + + +L NR + + FL SI + DP Sbjct: 2 NNTKWIYKGDYLHENSSLPIDRD------ILNILYNRGIKDEKEINRFLYSSIEDIR-DP 54 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + L D D A RI++A E+I I+GDYDVDG S ++ L +N YIP R Sbjct: 55 MTLADMDLAVNRILKAKEKQEEIWIYGDYDVDGITSTSMCFMALRDIGLNVRYYIPLR-D 113 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N + NEG +IITVDCG +S + +++A G++VI+ DHH++ + AY Sbjct: 114 EGYGLNKEALSYIKNEGGDVIITVDCGISSIEEIEHANKIGLNVIITDHHEINNALPSAY 173 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP R D++ L G F+ L IYR + + LD+VA+ T+ D Sbjct: 174 AVINPKREDNVYPFKFLAGVGTAFMFLYAIYRKMGI------GEKMHQYLDIVAIGTIAD 227 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---ITAENLGYMIGPSINAGG 309 +VPL+ NR + GL + + GL+ L+ + ++G++I P NA G Sbjct: 228 IVPLVEENRIFSKFGLKLLENTKHLGLRTLLGFLYPEYETKVFNTYDVGFVIAPVFNAAG 287 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ +G L +SD +E ++ L N R+ ++S +L+ E + + D++ Sbjct: 288 RLEDAKIGVELFVSDSKKESREISQNLMGKNNERKEIQSEILDLVEKNISEESLDMKN-- 345 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 VIVV +H G++G++A+++ +K+ +P+ + +E + I + + + Sbjct: 346 VIVVASKDFHHGVIGIVASKIVDKYYKPTIIMEIKEK-ENIAVASCRSIDNFSMIDALNT 404 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 I +K GGH AAG ++ D +A +I+ KI+ + ++ Sbjct: 405 MPDIFLKYGGHDGAAGFSIPADKIQEFSDRINSYAGSILDESDFQKPVKIEKEILFHKIS 464 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 +D L P+G GNP P+F+ N + +R++ H+ T +E + F Sbjct: 465 YEFLDKLRLLEPFGFGNPTPIFSIKNCLFKDLRMIGKDKNHMMFTILKDGNEIKNCVWFS 524 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 F + + + V L ++ ++ + D +P + Sbjct: 525 SGHN----FQEIAHMREIDVAFKLKQEIFKDRYMNKIYIEDLNPSQNE 568 >gi|291539243|emb|CBL12354.1| exonuclease RecJ [Roseburia intestinalis XB6B4] Length = 585 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 168/597 (28%), Positives = 281/597 (47%), Gaps = 43/597 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + I ++ I + AR++ NR V + +L I L DP +L Sbjct: 3 KWFVINKGADFA---GIAKRFGISPVTARLIRNREVMGDEAIARYLKGGIGELY-DPHLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+ +VQ I +KI + GDYD+DG S ++ + ++ C + + IPDR+ DGY Sbjct: 59 LDSDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L+E+ G IIT D G + + +A + G+ V+V DHH++ Sbjct: 119 GINDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A A+VNP +++ +LC A VV+ V+ ++Y + L+ VA Sbjct: 179 KRSEADAIVNPKQMECTYPYKNLCGAAVVWKVIQILYEK-----CDIAVEESYDFLENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 ATV DV+ L NR V +GL NPG++ALI + + I++ + G+++GP I Sbjct: 234 FATVGDVMDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + + L + +D ++ +A +L LN R+ M + +E A +V Sbjct: 294 NASGRLETAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEE---GN 350 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+VV H + G++A R++E +P+F ++ EDG GSGRSIE + + Sbjct: 351 TGEKVLVVYLPDVHESLAGIIAGRIREACHKPTFVLTKSEDGV-KGSGRSIEAYSMY--E 407 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + K GGH MAAGL++ N + + P KID + Sbjct: 408 ELCKCQELFTKFGGHPMAAGLSLPEANVEIFREKINACCG--LTEEDFIPKIKIDIPMPV 465 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +I L++ L P+G N P FA N + VV L++T +++ +++ A Sbjct: 466 DYPDIPLVNELLLLEPFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISA 525 Query: 544 IAFR-------VYGTPLGE------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F YG GE FL ++ G RM V + +N ++G++ Q+ + Sbjct: 526 VYFGDVEEFREYYGRKYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIK 582 >gi|317486573|ref|ZP_07945394.1| single-stranded-DNA-specific exonuclease RecJ [Bilophila wadsworthia 3_1_6] gi|316922173|gb|EFV43438.1| single-stranded-DNA-specific exonuclease RecJ [Bilophila wadsworthia 3_1_6] Length = 571 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 166/585 (28%), Positives = 263/585 (44%), Gaps = 23/585 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W + K +P +VA +L R + + FL+P +R L P P Sbjct: 2 KIWKFRNQPDKGPCPAGWADKLGVPQVVADLLWQRGLETSAQMDSFLSPGLRHLAP-PDC 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 +A + Q I ++I+GDYDVDG L+++ L V + +++PDR +G Sbjct: 61 WPGMQEAVDALEQGIREGRNVLIWGDYDVDGITGATLILQTLRFHDVPSTVHLPDRRKEG 120 Query: 135 YGPNPSLMEK-FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YG N +E+ EG +++TVDCG + A++ A G V+V DHH E PA+A Sbjct: 121 YGLNIPEIERLAAEEGPGILLTVDCGISDVKAVERARELGFMVVVSDHHMPPEELPPAHA 180 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + NP +D HL GV F ++ + L + D+ +LDLVAL T+ D+ Sbjct: 181 ITNPRLSEDN-PCPHLAGVGVAFFLMAALNGKL--EAMSGKRMDMRQVLDLVALGTLADM 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRI 311 V L G NR V GL+ PGL L S + A + + + P INA GR+ Sbjct: 238 VSLTGQNRILVKNGLLKIAEAKRPGLAELKGASGFSPVAALGAGQVVFNLAPRINAAGRL 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G L +L++ E LA L LN RR E + ++A + + Sbjct: 298 GSPTLAHDMLLTPSHDEAAKLAQTLTSLNDERRSEEDRIYKEALEQAEANPKRLG----F 353 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ G WH G++G++A+R+ E + RP + + + GSGRS+ FD+ ++ Sbjct: 354 VLYGKDWHQGVIGIVASRIVEVYYRPVLILCSDGESL-KGSGRSVPEFDLHAGLTRC--A 410 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NI 490 +L+ GGH AAGL + L + F + TP KID + S + Sbjct: 411 DMLLGFGGHRQAAGLRIAPGRLDELRERFDAVIREELGEAPLTPSLKIDAEMPFSQASDF 470 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF-ESQDSETLQAIAFR 547 ++ LE P+G GNP P+FA +++ + H+ + E TLQA A+R Sbjct: 471 TVLKGLELLQPFGIGNPEPIFASLPLRVKKRKAFGHSREHISLEVTEEGSGITLQAKAWR 530 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +G+R+ + +N + G +LRV D + Sbjct: 531 QAD----QIPESIQGQRIRLAYTPGINAYNGIASVELRVRDWEVL 571 >gi|313637726|gb|EFS03092.1| single-stranded-DNA-specific exonuclease RecJ [Listeria seeligeri FSL S4-171] Length = 718 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 165/529 (31%), Positives = 264/529 (49%), Gaps = 26/529 (4%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + D A RI QAI ++I+++GDYD DG S+A++M+ L H NA+ YIP+R +GYG Sbjct: 2 EMDVAVARIKQAIELEQQILVYGDYDADGVTSIAVLMKTLRHLGANADFYIPNRFTEGYG 61 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 PN + + +G LIITVD G + + + A G+DVIV DHH+ + A A+++ Sbjct: 62 PNVAAFDMAKKQGIDLIITVDNGIAALEVMTRAKEIGLDVIVTDHHEPREVMPEAVAVIH 121 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + L GV + + + L ++ LLDLVA+ TV D+V L Sbjct: 122 PKHPNSAYPFDELAGVGVAYKLSHAL---LGEEP--------KELLDLVAVGTVADLVSL 170 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+G ++ Sbjct: 171 TDENRLLVQLGLRQLREGANIGLGVLAKKASLKLEEATEETIGFGLAPRLNAIGRLGPAD 230 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + LL+++D +E LA ++D N+ R+ + + A + + V+VV G Sbjct: 231 PAADLLLTEDPEEALFLAEEIDDANKERKQIVLDTTKLAMEAIEAK---DNLGKVLVVSG 287 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + W+ GI+G++A++L + RP+ + + G GSGRSIE F + + ++ Sbjct: 288 EGWNTGILGIVASKLVSVYSRPAIVLGIDSVTGIAKGSGRSIESFHLYQA--LDKHRDLM 345 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGH MAAGLT+ N L Q+ A ++ P KI+ +N + V+++ I Sbjct: 346 TAFGGHPMAAGLTLPAENLAELELKLQEEAS-LLAEEDFRPALKIEERINLADVSVSFIA 404 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGT 551 LE P+G NP P+F L+ + + HL+ E+++S+ TL AI F V Sbjct: 405 QLEKLAPFGMDNPKPIFLLEGMHLKGTKRIGADKTHLKTMLETKESDATLDAIGFGVGDL 464 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G L +N W K+ QLR++D F + Sbjct: 465 ----VEKISPSADVDVVGELSINEWNNIKKPQLRMMDVRIPHWQLFDVR 509 >gi|194098157|ref|YP_002001205.1| RecJ [Neisseria gonorrhoeae NCCP11945] gi|239998609|ref|ZP_04718533.1| RecJ [Neisseria gonorrhoeae 35/02] gi|240016170|ref|ZP_04722710.1| RecJ [Neisseria gonorrhoeae FA6140] gi|240080314|ref|ZP_04724857.1| RecJ [Neisseria gonorrhoeae FA19] gi|240115265|ref|ZP_04729327.1| RecJ [Neisseria gonorrhoeae PID18] gi|240117552|ref|ZP_04731614.1| RecJ [Neisseria gonorrhoeae PID1] gi|240123107|ref|ZP_04736063.1| RecJ [Neisseria gonorrhoeae PID332] gi|240125358|ref|ZP_04738244.1| RecJ [Neisseria gonorrhoeae SK-92-679] gi|240127810|ref|ZP_04740471.1| RecJ [Neisseria gonorrhoeae SK-93-1035] gi|254493328|ref|ZP_05106499.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae 1291] gi|260440918|ref|ZP_05794734.1| RecJ [Neisseria gonorrhoeae DGI2] gi|268594466|ref|ZP_06128633.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae 35/02] gi|268596462|ref|ZP_06130629.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae FA19] gi|268600947|ref|ZP_06135114.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae PID18] gi|268603254|ref|ZP_06137421.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae PID1] gi|268681734|ref|ZP_06148596.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae PID332] gi|268683961|ref|ZP_06150823.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae SK-92-679] gi|268686206|ref|ZP_06153068.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae SK-93-1035] gi|291044241|ref|ZP_06569950.1| single-stranded-DNA-specific exonuclease recJ [Neisseria gonorrhoeae DGI2] gi|293399438|ref|ZP_06643591.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria gonorrhoeae F62] gi|193933447|gb|ACF29271.1| RecJ [Neisseria gonorrhoeae NCCP11945] gi|226512368|gb|EEH61713.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae 1291] gi|268547855|gb|EEZ43273.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae 35/02] gi|268550250|gb|EEZ45269.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae FA19] gi|268585078|gb|EEZ49754.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae PID18] gi|268587385|gb|EEZ52061.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae PID1] gi|268622018|gb|EEZ54418.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae PID332] gi|268624245|gb|EEZ56645.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae SK-92-679] gi|268626490|gb|EEZ58890.1| single-stranded-DNA-specific exonuclease [Neisseria gonorrhoeae SK-93-1035] gi|291011135|gb|EFE03131.1| single-stranded-DNA-specific exonuclease recJ [Neisseria gonorrhoeae DGI2] gi|291610007|gb|EFF39129.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria gonorrhoeae F62] gi|317163881|gb|ADV07422.1| RecJ [Neisseria gonorrhoeae TCDC-NG08107] Length = 566 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 166/564 (29%), Positives = 259/564 (45%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGIKEPNLGGLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML A Q V D +H G+VG++A+RLK+ Sbjct: 317 AARLNNLNIERREIEQSMLRDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + + DG L A + + L + +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPACDITLEQAQNL-ACHVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR + QL + Sbjct: 543 YRPVANEWRDNLELQLYIDYWEAA 566 >gi|240143727|ref|ZP_04742328.1| single-stranded-DNA-specific exonuclease RecJ [Roseburia intestinalis L1-82] gi|257204286|gb|EEV02571.1| single-stranded-DNA-specific exonuclease RecJ [Roseburia intestinalis L1-82] Length = 585 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 167/597 (27%), Positives = 280/597 (46%), Gaps = 43/597 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + I ++ I + AR++ NR V + +L I L DP +L Sbjct: 3 KWFVINKGADFA---GIAKRFGISPVTARLIRNREVMGDEAIARYLKGGIGELY-DPHLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+ +VQ I +KI + GDYD+DG S ++ + ++ C + + IPDR+ DGY Sbjct: 59 LDSDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------S 186 G N L+E+ G IIT D G + + +A + G+ V+V DHH++ Sbjct: 119 GINDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHY 178 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A A+VNP +++ +LC A V + V+ ++Y + L+ VA Sbjct: 179 KRSEADAIVNPKQMECTYPYKNLCGAAVAWKVIQILYEK-----CDIAVEESYDFLENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 ATV DV+ L NR V +GL NPG++ALI + + I++ + G+++GP I Sbjct: 234 FATVGDVMDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + + L + +D ++ +A +L LN R+ M + +E A +V Sbjct: 294 NASGRLETAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEE---GN 350 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+VV H + G++A R++E +P+F ++ EDG GSGRSIE + + Sbjct: 351 TGEKVLVVYLPDVHESLAGIIAGRIREACHKPTFVLTKSEDGV-KGSGRSIEAYSMY--E 407 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + K GGH MAAGL++ N + + P KID + Sbjct: 408 ELCKCQELFTKFGGHPMAAGLSLPEANVEIFREKINACCG--LTEEDFIPKIKIDIPMPV 465 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 +I L++ L P+G N P FA N + VV L++T +++ +++ A Sbjct: 466 DYPDIPLVNELLLLEPFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISA 525 Query: 544 IAFR-------VYGTPLGE------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F YG GE FL ++ G RM V + +N ++G++ Q+ + Sbjct: 526 VYFGDVEEFREYYGRKYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIK 582 >gi|222100103|ref|YP_002534671.1| Single stranded DNA-specific exonuclease [Thermotoga neapolitana DSM 4359] gi|221572493|gb|ACM23305.1| Single stranded DNA-specific exonuclease [Thermotoga neapolitana DSM 4359] Length = 958 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 157/557 (28%), Positives = 265/557 (47%), Gaps = 22/557 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILT 76 W + I+Q+ + +I ARVLVNR + + A + FL DP + Sbjct: 17 WEL--SHPDEHAVKRISQRFDLSEIAARVLVNRGIDTEEAARSFLFTD-ETCQHDPFLFK 73 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +KA ++Q + ++I GDYDVDG S ++ FL ++YIP RI +GYG Sbjct: 74 DMEKAVETLLQVRSEGQLVLIHGDYDVDGITSAVVLKEFLEENGWKVDVYIPHRIEEGYG 133 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + F G ++TVDCG T+ +++ A G+ VIV DHH+V + PA A+VN Sbjct: 134 VQKENVLSFKEMGVSCLVTVDCGITAVESIDLAKRLGMRVIVTDHHEVNGDIPPADAVVN 193 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + L GV + ++ + ++L+ D+ L+LVAL TV D+V L Sbjct: 194 PKVPGEDYPFRDLAGVGVTYKLVQALAQVLK-------YPDVEKYLELVALGTVADMVSL 246 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 + NR +V KG+ + + GLK + +T+ ++ Y I P +NA GR+G + Sbjct: 247 LDENRYFVKKGIELLMKTERLGLKK-LLEKLGLKKLTSHDISYKIAPRLNAAGRMGSATD 305 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL D E + +L LN RR +E + ++A K+ + +D+ + +IVV G+ Sbjct: 306 AFVLLTMKDPARTEGVVERLMELNNERRRIERQIYKEAVEKI--EANDLWKDPIIVVAGE 363 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++G++AA+L ++ +P +S ++ GS RS G+DI S V E I + Sbjct: 364 NWHVGVIGIVAAKLANRYEKPVAVVSLSDE-YAKGSIRSYNGYDIMNAFSGDVLE-IFDE 421 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH+ AAG ++ + + ++ + A + +D ++ + V+ I+ + Sbjct: 422 IGGHSSAAGFSLRKEHLESFKEYMKNVALEMKDEK-----VMVDAEVSLNDVDERFIEDI 476 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGE 555 + P+G GNP PV F N ++ I + + +D L+ I + Sbjct: 477 QLLMPFGQGNPEPVLLFSNLLIEKIHFFGEDNSNVFLHLKDGERKLEVIGYNFKSLSNSF 536 Query: 556 FLMQSRGKRMHVTGHLC 572 + R V +L Sbjct: 537 SALPVAPTRGSVVVNLR 553 >gi|148244741|ref|YP_001219435.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Vesicomyosocius okutanii HA] gi|146326568|dbj|BAF61711.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Vesicomyosocius okutanii HA] Length = 572 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 157/570 (27%), Positives = 252/570 (44%), Gaps = 34/570 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP + ++ R ++ + L+ ++ L+ + D A + QA+ N ++I+I Sbjct: 17 DIPIFLKKIYAARGIN----ESHLSLNLSRLLKPNFLQLDI--ALVLLEQALLNQKRILI 70 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155 GD+D DGA + + ++ L + +P+R GYG + ++ I + LIIT Sbjct: 71 VGDFDCDGATASVVAVKSLRMMGAKYVDFLVPNRFEHGYGLSEEIVSLAIQEKQPDLIIT 130 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G +S+D ++ A GI VIV DHH A A++NPN D +L GV Sbjct: 131 VDNGISSFDGIKLAKLSGIMVIVTDHHLPNENLPNADAIINPNLKDCEFLSKNLAGVGVC 190 Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 F + + L + + DL ++LDLVAL TV DVV NR V +G+ Sbjct: 191 FYLFSALKTYLSESDYFIHQKIVPPDLRNVLDLVALGTVADVVKFDQNNRILVDQGIKRI 250 Query: 272 RRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 ++Q L SS + A +L + I P +NA GR+ + G R L++DD + Sbjct: 251 QQQKCSPGILALLEISSRPSSTLCASDLAFSIAPRLNAAGRLSDIACGIRCLLTDDINDA 310 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI------QQASVIVVEGDRWHPGIV 383 A +L+ NQ R+ ++ M +QA+A V Q I + WH GIV Sbjct: 311 RRYAQELERFNQQRKQEQARMQDQAQAIVDMQELSFTQKDMGHDRFAISLFEPSWHEGIV 370 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHA 441 G++A +LKE + P + GS RSI + ++ + +VK GGHA Sbjct: 371 GIVAGKLKESYHCPVAIFAQSG-NYLKGSIRSIPSVHVKDLLDLVDRQNPDLIVKFGGHA 429 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 MAAGL+++ NF F + I+ DG L +++ +L GP Sbjct: 430 MAAGLSIKSENFSNFKQVFSDAIQIHLDNQISKVNLLTDGELEVFELSLNNAQLLVDVGP 489 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQS 560 +G G P+F ++ +VV HL+ + +++ IAF + L Sbjct: 490 WGQGFDEPIFYGK-FEIIEQKVVGKKHLKCRLKFKGNTKVFDGIAFFQPLLEFVQVL--- 545 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L +N WRGS QL ++ Sbjct: 546 ------AVYKLSINSWRGSTSLQLIIVQIK 569 >gi|78184730|ref|YP_377165.1| RecJ exonuclease [Synechococcus sp. CC9902] gi|78169024|gb|ABB26121.1| exonuclease RecJ [Synechococcus sp. CC9902] Length = 632 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 165/541 (30%), Positives = 264/541 (48%), Gaps = 20/541 (3%) Query: 53 SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112 S++ AK FL P+ L L D KA R+V+A N+E + I GDYD DG S AL+ Sbjct: 41 SVEEAKQFLIPT--SLPEAELHFPDLKKATNRLVEACQNNETVAICGDYDADGMTSTALL 98 Query: 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ 172 +R L IP R+ +GYG NPS++++ +G ++++TVD G + AL+ A + Sbjct: 99 LRALGPLGAAPRAAIPSRMEEGYGLNPSMVDRQHRDGVKILVTVDNGVAASAALRRAADL 158 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G++VIV DHH + + P AL++P D S L G+ +++ + L Q + Sbjct: 159 GMEVIVTDHHTIPDKPAPMTALIHPATTPDGSPYRGLAGVGLAYVLARAVAEQLNQPEAI 218 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 DL + TV D+ PLIG NRA++++GL R GL+AL P Sbjct: 219 CSAR------DLFCVGTVADMAPLIGANRAWLLEGLNQLHRTECFGLQALQRLAGLGEHP 272 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 +TA+++G+ + P INA GR+GE L LL +++ LA + D N+ RR + A+ Sbjct: 273 LTADDIGFQLAPRINAVGRLGEPRLVVELLTAEEPTTAMALARRCDDFNRQRRDLCDAIE 332 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 +A A V D Q S +++ WH G++G++AARL E++ RP+ ++ + +G Sbjct: 333 AEAVALVEADSSD-QLPSFLLLAQSHWHHGVIGIVAARLVERYHRPAALLAGDGEGLMRA 391 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S RS GF + + ++ +L + GGH A G TV N L + A + + Sbjct: 392 SVRSPRGFAVDQALNHCAT--LLERFGGHPAAGGFTVRAENVHALHELLCDQADSWLKQQ 449 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 + D +L VN L L+S P+G G+ P+F + ++ R + HL + Sbjct: 450 GQGLPIQPDALLRLDEVNWDLWKSLQSLAPFGIGHEVPLFWSRDCTVEERRDLKGGHLAL 509 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 +E +AIA+R + V + VN W+G +R QL + Sbjct: 510 RLRQAKTER-RAIAWRWD-------PASHVPDQCDVAYRISVNRWQGEQRLQLELKAIRT 561 Query: 592 V 592 Sbjct: 562 H 562 >gi|103488491|ref|YP_618052.1| single-stranded-DNA-specific exonuclease RecJ [Sphingopyxis alaskensis RB2256] gi|98978568|gb|ABF54719.1| single-stranded-DNA-specific exonuclease RecJ [Sphingopyxis alaskensis RB2256] Length = 588 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 235/597 (39%), Positives = 334/597 (55%), Gaps = 14/597 (2%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 +A LG+ CSI+G W + + A D+V ++L+ R V+ D Sbjct: 1 MSEAALGITCSIAGQSWRWRRASADMA-----AENLAPDDLVTQLLLARGVARDDLDRQR 55 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 P++R MPDP + D D AA R+ A+ E + IFGDYDVDGA S AL++R L Sbjct: 56 TPTLRGFMPDPSLFRDMDAAAARLADAVERREAVTIFGDYDVDGATSAALLVRLLRALGT 115 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 YIPDR+++GYGP+ + + K G++LI+TVDCG+ +++A+ A G++VIV+DH Sbjct: 116 TVGAYIPDRLMEGYGPSGAALVKIGEAGSKLIVTVDCGAQAFEAIAEANAAGVEVIVVDH 175 Query: 182 HQVKSEEIPAYALVNPNRLDDLSG---QGHLCAAGVVFLVLVLIYRILRQDNKV--PLNF 236 HQ + A ALVNPNRLD+ G+L A GV FL+ + R LR Sbjct: 176 HQCATSLPAALALVNPNRLDESPDAAVHGNLAAVGVAFLLGAALLRTLRARGFFAGREEP 235 Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN 296 L+ LLDLVAL TV DV L G NRA V +GL V R+GN GL AL++ ++ P A + Sbjct: 236 ALIELLDLVALGTVADVARLTGFNRALVTQGLKVMARRGNIGLAALMDAARLTRPPGASD 295 Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356 +G+ +GP INAGGR+G+S+LG RLL +DD QE +A +L LN+ RR +E+A+L++A Sbjct: 296 MGFALGPRINAGGRVGKSDLGVRLLTTDDPQEAADIAQQLCRLNEERRTIEAAVLDEAL- 354 Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI 416 A V +V G+ WHPG++G++A RLKE+ RP+ I+ + DG G GSGRSI Sbjct: 355 ---AASAACGNAPVAIVAGEGWHPGVIGIVAGRLKERLHRPAIVIAVDADGIGKGSGRSI 411 Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 G D+G + A E G+LV GGGHAMAAGLTV L F V Sbjct: 412 SGVDLGAAILAAKETGLLVAGGGHAMAAGLTVAADRVDALGAFLSDRLAADVERASGERA 471 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536 ID VL ++ D +ESAGPYGAG P P A ++ +V H+++ Sbjct: 472 LLIDAVLAPRGISPLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGTDHVRLIVAGD 531 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 D +A+AFR T LG+ L+ +RG+++ + G + W +L + DA+ + Sbjct: 532 DGARFKAVAFRSAETVLGQTLLGARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD 588 >gi|82701773|ref|YP_411339.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosospira multiformis ATCC 25196] gi|82409838|gb|ABB73947.1| exonuclease RecJ [Nitrosospira multiformis ATCC 25196] Length = 613 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 163/608 (26%), Positives = 252/608 (41%), Gaps = 65/608 (10%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 +H ++ARV R + L L+P L + A+ + AI +++ Sbjct: 19 RHGFHPVLARVYSARGI---EEPGQLEIDWSRLIP-FARLKNATAMAQFLATAIALRKRL 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN--EGAQLI 153 +I DYD DGA + A+ +R L + +P+R GYG P ++ ++ Sbjct: 75 LIVADYDSDGATACAVGIRALRKFGAQVDYLVPNRFEYGYGLTPEIVRVAAAGVHRPDIL 134 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 ITVD G S + + A G+ V+V DHH A +VNPN+ HL G Sbjct: 135 ITVDNGIASVEGVAEANRLGMQVLVTDHHLPGDTLPEAAVIVNPNQPGCDFPSKHLSGVG 194 Query: 214 VVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 V+F V++ + LR +L SLLDLVAL TV DVV L NR V +GL Sbjct: 195 VMFYVMLALRAELRAKGMFASPQQEPNLGSLLDLVALGTVADVVKLDDNNRLLVQQGLKR 254 Query: 271 ARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 R+ + S + LG+MIGP +NA GR+ + +LG LI+DD Sbjct: 255 IRKGSGCAGINALINIACRNFSQTSTYELGFMIGPRLNAAGRLDDMSLGIECLITDDPPR 314 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKV------------------------------ 358 LA++LD N+ R+ +ES M + A + Sbjct: 315 AAQLALQLDTFNRKRQEIESHMRDSALNMLENIFSGSSGLQDSPTLRPSDMPQRSGVFRS 374 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 + A + + WH G++G+LA+R+K+KF RP + + GSGRSI G Sbjct: 375 HDSPQEGTSAYALTLFDPGWHQGVIGILASRIKDKFHRPVITFAPGGQDELKGSGRSIPG 434 Query: 419 FDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 F + + G+L+K GGH+ AAGLT+ +F + F++ A ++ V Sbjct: 435 FHLRDALDLVSKRYPGLLLKFGGHSAAAGLTIRTCDFEKFRAAFEQTARELLGPADLKRV 494 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES- 535 + DG L+ S + + L + L +G G P P F ++ RVV HL++ Sbjct: 495 IETDGDLDESEITLELAEQLVR-QVWGQGFPQPAFRSR-FHVEDQRVVGQKHLKLKLRKA 552 Query: 536 ----QDSET------LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 ++ AI F G + L VN ++ Q Sbjct: 553 RPAAGNNPPEKPVLLYDAILFLQDG---------PLPGVIDAVYRLQVNDFKSDVSLQFI 603 Query: 586 VLDASPVE 593 + S Sbjct: 604 LEHWSEAT 611 >gi|269303438|gb|ACZ33538.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila pneumoniae LPCoLN] Length = 588 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 159/584 (27%), Positives = 269/584 (46%), Gaps = 13/584 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S +G W +E I ++ +P VA++ ++R +I FL + L Sbjct: 6 NASATGLLW--AHPKEDPAFLGMIIKEFHLPPTVAQIFISRGFQTIQEIHKFLYSHLSSL 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DP + D KA R++ A E +MI+GD DVDG VAL++ FL V+ + + Sbjct: 64 Y-DPGLFLDMSKAVERLLLARDRKEHVMIYGDSDVDGMTGVALLVEFLRDIDVHVSYFFL 122 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 I+ +G +L+ K EG L+ITVDCG T+ + T QGIDVI+ DHH + Sbjct: 123 GAILKQHGETSTLIAKLKEEGITLLITVDCGITAGKEVSDITRQGIDVIITDHHMPTGKI 182 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLLDLVAL 247 A +NP D L GV F + + L N VP L LLDLV L Sbjct: 183 PHCVATLNPKLRDHTYPNRELTGVGVAFKLARGVLNALISRNLVPKSQGSLKKLLDLVTL 242 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306 T+ DV L+G NR V G+ R GL L S +++ ++ I P +N Sbjct: 243 GTITDVGVLLGENRVMVRYGIKEIARGARLGLNKLCALCGVEKSEVSSTDIVLKIAPKLN 302 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 + GR+ + G LL++ D + ++ L M+LD +N+ R+ +E+ + + ++L +I Sbjct: 303 SLGRLDDPAKGVELLLTQDDERVDALIMELDNINKERQRIEADVFQDV-QEILNSNPEIL 361 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + IV+ WH ++ +++ARL + + +P I+ + G G GS R+I F + ++ Sbjct: 362 NQAAIVLSSTAWHARVIPIISARLAKTYNKPVVIIAIQG-GIGKGSARTIGSFPLLGVLK 420 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 +L+ GGH AAG+ ++ F ++ + T P +ID + Sbjct: 421 KC--SSLLLSYGGHDFAAGVIMKEDKVEDFKKKFVHLVNSSLKKGDTLPHLEIDAYADFD 478 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 A++ L+ +E P+G GN P+F +++ +V+ HL++ ++ L+ +AF Sbjct: 479 AIDYDLLASMELFEPFGKGNLMPIFYSKVRQVRYPKVLPGNHLKLYLSQKE-RNLEGVAF 537 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L + + ++ GS L V D Sbjct: 538 GLGRH--ADALKARWHYPLEIAYTPRLSQTSGSGVIHLLVRDFR 579 >gi|269122877|ref|YP_003305454.1| single-stranded-DNA-specific exonuclease RecJ [Streptobacillus moniliformis DSM 12112] gi|268314203|gb|ACZ00577.1| single-stranded-DNA-specific exonuclease RecJ [Streptobacillus moniliformis DSM 12112] Length = 883 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 163/582 (28%), Positives = 275/582 (47%), Gaps = 28/582 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W+ + + I + + +L +R + +F+NPS+ L DPL L Sbjct: 4 KWILSETKSKLTNF-----DLPIDNNILNILASRGIVDEKDIVNFINPSLENL-EDPLKL 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134 D AA I+ AI + I I+GDYDVDG S +L+ N + YIP R +G Sbjct: 58 KDLGLAASYILDAIKEYKNICIYGDYDVDGITSTSLLYLAFKKIGAKNIDYYIPLR-NEG 116 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAY 192 YG N +++ N+G LIITVDCG +SY +++ + + I+ DHH + + A Sbjct: 117 YGLNKDAIQEIKNKGTDLIITVDCGISSYHDVEFINSLDMKAIITDHHDIPSDKKLPRAL 176 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A +NP RLD+ ++ GV FL+ ++R L + + S LD+ +L T+ D Sbjct: 177 ACINPKRLDNEYSFPNIAGVGVAFLLAYELFRRLGIKEE------IYSYLDIASLGTIAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLK-ALIERVNISSPITAENLGYMIGPSINAGGRI 311 ++P+I NR V GL + N GL+ L + +T ++ + I P NA GR+ Sbjct: 231 IMPIIKENRIIVKYGLEKLKNSSNLGLRTILNKLNLKDKELTTGDISFKIAPVFNAAGRL 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ LG +LLISD+ E+ +LA L N R+ ++ ++ ++ + DI ++ Sbjct: 291 ADAKLGVKLLISDNQNEINILADNLISNNIYRKKIQDEIITSVLDELREK--DISNKYIL 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVE 430 + +H GI+G++A+++ E + +P + E+G + S RS+EGF+I K + Sbjct: 349 ISHSPNYHHGIIGIVASKVLETYYKPCIIMEENLEEGIAVASCRSVEGFNITKA--LSYV 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L+K GGHA AAG T++ N + + +A + + T KID + A ++ Sbjct: 407 SNLLIKFGGHANAAGFTIKLENIDIFKEKIEAYAKEQLENIKLTKNIKIDMKIPAQKISY 466 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 I L P+G GNP P+ N + + + V HL+ + + AI F Sbjct: 467 EFIQSLNLLKPFGFGNPTPLLMSENCIIHNPKTVGSNEQHLKFDIDQKGFSVKNAIWFN- 525 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+ L E V L N ++ + + D Sbjct: 526 GGSNLQELRKNHI--FYDVVFKLETNEYKDRFYPSIMIEDMK 565 >gi|285018126|ref|YP_003375837.1| single-stranded-DNA-specific exonuclease [Xanthomonas albilineans GPE PC73] gi|283473344|emb|CBA15849.1| probable single-stranded-dna-specific exonuclease protein [Xanthomonas albilineans] Length = 578 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 170/559 (30%), Positives = 267/559 (47%), Gaps = 24/559 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ RV R + D P++ L+P P L+ D A + +AI ++I++ GD Sbjct: 25 PLLRRVYAARG-AHDTILA--QPTLAQLLP-PDTLSGIDAAVALLAEAIMAEQRILVVGD 80 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L +P+R+V GYG +P+L+ + L++TVD G Sbjct: 81 FDCDGATACAVAVRGLRLLGASQVLHAVPNRMVHGYGLSPALVAELAPLQPDLLVTVDHG 140 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A G V+V DHH A +V+PN D L GV+F VL Sbjct: 141 IACHAGIAAAKALGWRVLVTDHHLPGRTLPVADVIVDPNLAGDAFPSKMLAGVGVIFYVL 200 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-N 276 + + R LRQ DL LLDLVA+ TV D+VPL NRA V GL +R Sbjct: 201 LALRRHLRQCGAFAATAVPDLGMLLDLVAVGTVADLVPLDANNRALVSAGLRRLQRGEGC 260 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALIE ++A ++G+ + P +NA GR+ + LG LL+ ++ Q+ +A Sbjct: 261 LGLRALIEVSGRDPARLSASDIGFALAPRLNAAGRLEDMALGIALLLCEEPQQAHAIAAT 320 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT--QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AEA V Q + + +WHPG++GL+A+++K++ Sbjct: 321 LEQINAERRAVQQQMTDAAEAVVAQAMLAAPEQPPVAVCLFDPQWHPGVIGLVASKMKDR 380 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAMAAGLTVE 449 RP A + E G GS RSI GF I ++ A G++ K GGHAMAAGL++ Sbjct: 381 LHRPVIAFAPAEPGSDQLRGSARSIPGFHIRDAMAAVEARLPGLMDKFGGHAMAAGLSLR 440 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + F ++A + + + DG L ++ + L GP+G G P P Sbjct: 441 QAALAEFEQAFCEYARSSLDPQLLHAELHSDGALEPHELDHRHAEALRLGGPWGQGFPEP 500 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL+++ L AI F + +R+HV Sbjct: 501 LFDGE-FEVLQWRVLKERHLKLSLRCAGRRAPLNAIYFNGWRG-------SEPARRVHVA 552 Query: 569 GHLCVNYWRGSKRCQLRVL 587 L + + G QL V Sbjct: 553 YRLVADDYLGGDAVQLVVE 571 >gi|304440365|ref|ZP_07400254.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371117|gb|EFM24734.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus duerdenii ATCC BAA-1640] Length = 578 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 164/595 (27%), Positives = 271/595 (45%), Gaps = 39/595 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW+ +E + I A +L R + + + A+ FLN L PL + Sbjct: 3 RWILKGNKENTLDIEKL----NITKTTANLLSKRGIVTNEEAEHFLNIDYDDL-ETPLKM 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A ++ A + + I I GDYDVDG S ++++ L +N IP R +GY Sbjct: 58 RDMIIAGNIVLSAKSSGKNIAIVGDYDVDGVMSTVILLKGLQTLGMNPIYRIPAR-EEGY 116 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA---- 191 G N +++++ + LIIT D G + + ++YA + G+DVIV DHH+V + Sbjct: 117 GINNNIVDELKEKDVSLIITCDNGIAASETVKYAKSLGVDVIVTDHHEVPKIDGKDSIPA 176 Query: 192 -YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A++NP R D LC AGV F ++ +Y+I D + +LL VA+AT+ Sbjct: 177 ADAVLNPKRSDCDYPFKELCGAGVSFKLISYLYKIQGIDEEKE-----KALLPYVAVATI 231 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 CD++ L+G NR +V GL + G +++ + +G++IGP IN+ GR Sbjct: 232 CDMMNLVGENRIFVKYGLEILNSSTISGFDDIVKLSGFQKELDVSAIGFLIGPMINSAGR 291 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++G L +SD + + L LN R+ ++A + T + V Sbjct: 292 IETADIGVELFMSDSITKRTEIVELLKKLNTTRQSYTEEGFKKAIDFIETHEMQRK-FPV 350 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 +VV + HP + G++A R+KEK+ RP+ +S + GSGRSIE +D+ + Sbjct: 351 LVVLDEDLHPAVAGIVAGRIKEKYYRPTIVLS--GKDELKGSGRSIEAYDM--FTKVSEI 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 + L GGH MA GLT++R N ++ + +D L +N Sbjct: 407 KSYLTAFGGHQMACGLTIQRENLRDFVKDLNN--NSNLTREDLVKTIYLDDSLTLRDINF 464 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF-- 546 D + P+G GN +P+F F N K+ + V+ L+ TF ++ ++ I F Sbjct: 465 DFYDEIMRLKPFGKGNEDPIFGFKNLKIVRLDVLGKNKNVLKFTFTDGEN-YVEGIYFQT 523 Query: 547 ----------RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + G L L + + V + VN + G+ QL + P Sbjct: 524 FDNFKKLMSSKYDGEELNYILQNKKELFIDVVASVDVNKFMGNTTLQLSIKSVRP 578 >gi|332703250|ref|ZP_08423338.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio africanus str. Walvis Bay] gi|332553399|gb|EGJ50443.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio africanus str. Walvis Bay] Length = 574 Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 177/581 (30%), Positives = 277/581 (47%), Gaps = 23/581 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW+ + + + + ++A +L R + ++ FL+P +R L P Sbjct: 13 RRWIFRHSDQAPAETESWAHELGVSPLLAALLWQRGLRTLRDMDVFLSPGLRHLAK-PGD 71 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D AAR + Q + + ++GDYDVDG + AL+ L+ Y+P+R+ +G Sbjct: 72 FPGLDDAARVLAQGLEQGLPMAVWGDYDVDGVTATALVTDVLARRGFAVRHYLPNRMEEG 131 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E+ EG +L++TVDCG TS + A G+ V+V DHH SE A+ + Sbjct: 132 YGLNLQGIEQLAAEGVRLLLTVDCGITSTVEIARARELGMTVVVTDHHLPGSELPAAHGM 191 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 NP L GV FL++ + R+L D+ +LDLVAL T+ DVV Sbjct: 192 CNPRLAPC--PCDSLAGVGVAFLLMAAVNRLLPGSPC-----DMREVLDLVALGTLADVV 244 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIG 312 L G NR V GL++ PG+ AL E + P+ A + + + P INA GR+G Sbjct: 245 DLNGQNRILVKNGLLLIAEGRRPGIFALKEAACYNPTAPMGAGQVVFGLAPRINAAGRLG 304 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L LL++ D + LA KLD +N R+ E + +A A+ TQ + V Sbjct: 305 QADLALELLLAPDRETARPLAAKLDAMNSERKHEEERITAEALAQAETQLHRVGL----V 360 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A+R+ E F RP +S EEDG GSGRSI+ FD+ Sbjct: 361 LSSPGWHHGVIGIVASRMVEAFYRPVLILS-EEDGLLKGSGRSIDEFDLH--QGLCACAT 417 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L GGH AAGL + L + F + V P K+DG+L ++ L Sbjct: 418 LLTGFGGHRQAAGLRLRSSELDALREAFDQAVRTQVGDAPLAPRMKLDGLLAFGLIDQRL 477 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGT 551 + LE P+G GNP PVF +++ R+ H+ + + TL+A A+R + Sbjct: 478 LRELELLQPFGMGNPEPVFLHSGAMVRAHRIFAGKHVSLDLRDEASGVTLKAKAWRQAES 537 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L GK + + +N + G + +L + D P Sbjct: 538 LPHAVL----GKPISLAFTPKINSYNGLDQIELHIKDWKPA 574 >gi|139437965|ref|ZP_01771518.1| Hypothetical protein COLAER_00505 [Collinsella aerofaciens ATCC 25986] gi|133776162|gb|EBA39982.1| Hypothetical protein COLAER_00505 [Collinsella aerofaciens ATCC 25986] Length = 1095 Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 164/577 (28%), Positives = 268/577 (46%), Gaps = 24/577 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + Q+ ++ IP +VAR++V + SI + FL PS+ DPLI+ Sbjct: 9 RW--AVAQQNPELEKELSAGLGIPGLVARIMVAHGIGSIKEGQLFLTPSLDRDWADPLII 66 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 A R+ +AI N E I +FGD+DVDG S L+ L + +IP R +GY Sbjct: 67 PGMSVVADRVERAIRNHEHIAVFGDFDVDGITSTCLLTEALRTFGADVTPFIPRRFDEGY 126 Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G + + +++ QLI+TVD G + + + Y + GID++V DHH+ S+++P Sbjct: 127 GLSRAALDRVNELARPQLIVTVDNGIAAKEEVSYLKSLGIDLVVTDHHE-PSDQVPQGVP 185 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 + +LDD L AGV ++ ++ L + SL+++ AL TV D++ Sbjct: 186 LTDPKLDDDGPSRELAGAGVALKLVQVLGERLGK------PSYWRSLIEVAALGTVSDMM 239 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 PL NRA V +G+ R PG AL + L + + P +NA GR+ + Sbjct: 240 PLTPENRALVAEGIQQMRVTARPGYIALAALAKADLSSITADGLSFSLIPRLNAAGRMAD 299 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L LL++ D E LA +L+ +N+ RR +E+ + A AKV IVV Sbjct: 300 PKLALDLLLARDPIEASALAAELEEINRQRREIEAELTRDAMAKVEET---YDGGRAIVV 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G+ G++A+RL ++ P+ S EDG GSGRS+ ++ + + Sbjct: 357 GGEGWHEGVKGIVASRLTNRYHVPALLFS-IEDGIARGSGRSVGKVNLFDAIERC--SDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 +++ GGHA A G+T+E +PA ++ ++ S +NI I Sbjct: 414 MIRRGGHAGAVGVTIEASKLDEFRRRLSVVLSE-LPAEDFEDTDEVAATVDLSELNIETI 472 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTP 552 + + P+G GN P+ A + VV M F + D ++ AI FRV Sbjct: 473 EQISRLEPFGQGNKVPLLAAEGVTMCDRAVVGKTGEHMRFVATDGAASVPAIMFRVPQID 532 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + +W+G + +L V D Sbjct: 533 ----KLINCDSAVDLVFEAVAEHWQGRVKPKLMVKDV 565 >gi|310658611|ref|YP_003936332.1| single-stranded-DNA-specific exonuclease [Clostridium sticklandii DSM 519] gi|308825389|emb|CBH21427.1| putative single-stranded-DNA-specific exonuclease [Clostridium sticklandii] Length = 777 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 169/548 (30%), Positives = 286/548 (52%), Gaps = 20/548 (3%) Query: 44 ARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 + +L R ++I+ +K FLNP+ L+ P +L D +K RI A Y S+ I I+GDYDV Sbjct: 18 SHLLNVRQINIEESKSFLNPTKADLI-SPYLLKDMEKVVNRINTAKYKSQLICIYGDYDV 76 Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 DG +SV+++++ + +N+ YIP RI +GYG N ++ GA LIITVDCG TS Sbjct: 77 DGISSVSILLKTFNFLGINSIFYIPKRIEEGYGINTQAIDTIKKMGADLIITVDCGITSV 136 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 D ++YA +DVIV DHH+ K A ++NP + + HLC AG+ + + Sbjct: 137 DEIEYAKTIDLDVIVTDHHECKEILPDAIGIINPKQDECEYPYKHLCGAGIALKIAQALI 196 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + L+++ +AT+ D+V L G NR V GL+ ++ N GLKAL+ Sbjct: 197 E-------DNDSALFDELIEIACIATIADIVELSGENRVIVKNGLLSLKKTINIGLKALM 249 Query: 284 ERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 E SS I + N+ +++ P IN+ GR+G LG L+I DD +E ++A K++ LN+ Sbjct: 250 EVSGINSSNINSSNIAFILAPRINSTGRMGTPELGVSLIIEDDFEEAVIMARKIEELNRE 309 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ +E + E+A A + + + +++ WH G++G++A++L EK+ +P+F I+ Sbjct: 310 RQTVELKIFEEAVALIEQKS---KNNKILIASSKNWHSGVIGIVASKLTEKYNKPTFVIA 366 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E++ G GS RSI+GF++ + + L+K GGH AAG+T+ + Sbjct: 367 IEDENIGKGSARSIDGFNL--FENLLKLDECLIKFGGHNQAAGITIHEDRIAEFELMINE 424 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 A I+ + +ID L +N + +L P+G GN P+F N+KL + + Sbjct: 425 IAEEILNKNHFQRIIEIDSKLKLKDINSNTLKILNELEPFGIGNRKPLFCLTNYKLSNYK 484 Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582 + ++ F+S+ ++ ++ I F + + L +N + + Sbjct: 485 YIGK--MKKHFKSEINDDIEIIGFNKHEL----INNIDLNFPVDFVFELEINSFNNKDKI 538 Query: 583 QLRVLDAS 590 QL + D Sbjct: 539 QLLLRDLR 546 >gi|332524445|ref|ZP_08400657.1| single-stranded-DNA-specific exonuclease RecJ [Rubrivivax benzoatilyticus JA2] gi|332107766|gb|EGJ08990.1| single-stranded-DNA-specific exonuclease RecJ [Rubrivivax benzoatilyticus JA2] Length = 569 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 176/586 (30%), Positives = 264/586 (45%), Gaps = 32/586 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A A+ ++ + ++AR+L R V A D L+ L+ P L Sbjct: 2 ILQSRDVPPRAAFAL-EQAGVHPLLARLLAARGVR---AADELDTHPSRLLR-PDALRGA 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIVDGY 135 +A R + + +I + DYD DGA + A+ +R L+ + + +PDR V GY Sbjct: 57 AEAGRLLADTLAGGGRICVVADYDCDGATACAVALRGLAMLGARREHLHYVVPDRAVHGY 116 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV-----KSEEIP 190 G P+++E + L++TVD G S + + +A + G+ V+V DHH Sbjct: 117 GLTPAIVELAREKRPDLLVTVDNGIASLEGVAHARSLGLAVLVTDHHLPAMDASGVVLPA 176 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALA 248 A +VNPN+ L GVVF VL+ LR L SLLDLVAL Sbjct: 177 ADVIVNPNQPGCGFDSKALAGVGVVFYVLLAARAELRARGAFDAASQPRLESLLDLVALG 236 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSIN 306 TV DVV L NR V GL R + PG+ AL + + + G+ +GP IN Sbjct: 237 TVADVVRLDANNRRLVGLGLARVRAGRMQPGVAALFAVARRAPERAASFDFGFALGPRIN 296 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + LG L+SDD LA +LD +N+ RR +E+ M E AEA V Sbjct: 297 AAGRLADMTLGIECLLSDDPMRAAELAAQLDTINRERREVEAGMREAAEATVERYGSADT 356 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +V + +H G+VG++A RLK++ RP+FA + DG GSGRSI GF + + Sbjct: 357 PPAV-ALFDPGFHEGVVGIVAGRLKDRLHRPTFAFACGADGTLKGSGRSIPGFHLRDALD 415 Query: 427 FA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 G+L++ GGHAMAAG T+ F + A + A +DG L Sbjct: 416 LVAKRHPGLLLRFGGHAMAAGCTLAAGGFETFEQALRAVAGEWLDAATLERRLAVDGPLE 475 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 + + +LES +G G PVF ++ R+V H ++ AI Sbjct: 476 PQWFDTKTVALLES-QVWGQGFEAPVFCDE-VQVVQQRLVGEKHTKLRLRH-GGALRDAI 532 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F +R+ + L ++ W G +R Q+ V A+ Sbjct: 533 WFGHAE---------PLPERLRLAYRLSLDEWNGQQRVQMVVEAAA 569 >gi|225377723|ref|ZP_03754944.1| hypothetical protein ROSEINA2194_03374 [Roseburia inulinivorans DSM 16841] gi|225210400|gb|EEG92754.1| hypothetical protein ROSEINA2194_03374 [Roseburia inulinivorans DSM 16841] Length = 584 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 161/597 (26%), Positives = 269/597 (45%), Gaps = 44/597 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLIL 75 +W + + ++ I + AR++ NR V + A + +L S++ L DP +L Sbjct: 3 KWFVINKGADF---EKLGKEFGISPVTARLIRNREVIGEAAFERYLYGSLKDLY-DPHLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D D+ + I + I I GDYD+DG S ++ R + HC N + IPDR+ DGY Sbjct: 59 KDADRLTDILKVKIEEQKPIRIIGDYDIDGVMSTYILYRGIKHCGGNVSTQIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-------- 187 G N +L+++ +G I+T D G + + +A G+ V+V DHH++ Sbjct: 119 GINENLIDQAKRDGMDTILTCDNGIAAISEIAHAKELGMTVLVTDHHEIPYTEENGEKQF 178 Query: 188 -EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+VNP + + LC A V + VL ++Y + + L+ VA Sbjct: 179 LRSNADAIVNPKQQECAYPFKELCGAAVAWKVLQVLYEKMG-----FALEETYEFLENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSI 305 ATV DV+ L NR V +GL R NPG++ALI + ++ I A + G+++GP I Sbjct: 234 FATVGDVMDLTDENRILVKEGLNRIHRTKNPGMRALIFQNHLEPEQINAYHFGFVLGPCI 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + L L +E A +L LNQ R+ M + +E+A+ V Sbjct: 294 NASGRLDTAKLSLSLF-LQGEEEAAKTARELVELNQQRKDMTADGVEEAKRVVEEHYMSD 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+V+ + H + G++A R++E + +P F ++ E+G GSGRSIE + + Sbjct: 353 K---VLVIYLPQVHESLAGIIAGRIREAYHKPVFVLTKAEEGV-KGSGRSIEEYSMY--E 406 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 +L K GGH MAAGL++ N + + A+ + P KID + A Sbjct: 407 ELCKCRELLEKFGGHPMAAGLSLPEENVDKFREKINACAN--LTEDDLIPKIKIDIPMPA 464 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 + + LI P+G N P FA N + VV L++ + E + A Sbjct: 465 AYADAGLIREFAVLEPFGKANIKPQFADKNLSITRAFVVGKNQNVLRLNLLTAAGEAVTA 524 Query: 544 IAFRVYGTPLGEFLMQSRGKRMH-------------VTGHLCVNYWRGSKRCQLRVL 587 + F + + + + + +N + G + Q+ + Sbjct: 525 VYFGDIEAFKAYYAEKYGSAEVEKAFRGQINKLRIMIVYYPEINEYNGVESVQVIIR 581 >gi|15618474|ref|NP_224759.1| ssDNA exonuclease [Chlamydophila pneumoniae CWL029] gi|15836094|ref|NP_300618.1| ssDNA exonuclease [Chlamydophila pneumoniae J138] gi|16752476|ref|NP_444738.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila pneumoniae AR39] gi|33241916|ref|NP_876857.1| ssDNA-specific exonuclease [Chlamydophila pneumoniae TW-183] gi|4376856|gb|AAD18703.1| ssDNA Exonuclease [Chlamydophila pneumoniae CWL029] gi|7189118|gb|AAF38060.1| single-stranded-DNA-specific exonuclease RecJ [Chlamydophila pneumoniae AR39] gi|8978934|dbj|BAA98769.1| ssDNA exonuclease [Chlamydophila pneumoniae J138] gi|33236426|gb|AAP98514.1| ssDNA-specific exonuclease [Chlamydophila pneumoniae TW-183] Length = 588 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 161/584 (27%), Positives = 274/584 (46%), Gaps = 13/584 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 S +G W +E I ++ +P VA++ ++R +I FL + L Sbjct: 6 NASAAGLLW--AHPKEDPAFLGMIIKEFHLPPTVAQIFISRGFQTIQEIHKFLYSHLSSL 63 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DP + D KA R++ A E +MI+GD DVDG VAL++ FL V+ + + Sbjct: 64 Y-DPGLFLDMSKAVERLLLARDRKEHVMIYGDSDVDGMTGVALLVEFLRDIDVHVSYFFL 122 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 I+ +G +L+ K EG L+ITVDCG T+ + T QGIDVI+ DHH + Sbjct: 123 GAILKQHGETSTLIAKLKEEGITLLITVDCGITAGKEVSDITRQGIDVIITDHHMPTGKI 182 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL-NFDLLSLLDLVAL 247 A +NP D L GV F + + L N VP L LLDLV L Sbjct: 183 PHCVATLNPKLRDHTYPNRELTGVGVAFKLARGVLNALISRNLVPKSQGSLKKLLDLVTL 242 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSIN 306 T+ DV L+G NR V G+ R PGL L S +T+ ++ I P +N Sbjct: 243 GTITDVGVLLGENRVMVRYGIKEIARGARPGLNKLCALCGVEKSEVTSTDIVLKIAPKLN 302 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 + GR+ + G LL++ D + ++ L M+LD +N+ R+ +E+ + + + + + + ++ Sbjct: 303 SLGRLDDPAKGVELLLTQDDERVDALIMELDNINRERQRIEAEVFQDVQEILNSNPEILK 362 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 QA++ V+ WH ++ +++ARL + + +P I+ + G G GS R+I F + ++ Sbjct: 363 QAAI-VLSSTAWHARVIPIISARLAKTYNKPVVIIAIQ-RGIGKGSARTIGSFPLLGVLK 420 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 +L+ GGH AAG+ ++ F ++ + T P +ID + Sbjct: 421 KC--SSLLLSYGGHDFAAGVIMKEDKVEDFKKKFVHLVNSSLKKGDTLPHLEIDAYADFD 478 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 A++ L+ +E P+G GN P+F +++ +V+ HL++ ++ L+ +AF Sbjct: 479 AIDYDLLASMELFEPFGKGNLMPIFYSKVRQVRYPKVLPGNHLKLYLSQKE-RNLEGVAF 537 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L S + + ++ GS L V D Sbjct: 538 GLGRH--ADALKASWHYPLEIAYTPRLSQTSGSGVIHLLVRDFR 579 >gi|295398001|ref|ZP_06808057.1| single-stranded-DNA-specific exonuclease RecJ [Aerococcus viridans ATCC 11563] gi|294973759|gb|EFG49530.1| single-stranded-DNA-specific exonuclease RecJ [Aerococcus viridans ATCC 11563] Length = 780 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 174/600 (29%), Positives = 288/600 (48%), Gaps = 35/600 (5%) Query: 11 CSISGFRWVSLLGQEGINR-----ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPS 64 S+ + W+ + + + ++P +V +V+ ++ + + + F+ Sbjct: 2 QSV--YEWIEPEYLSNADDTAATFIQQLAEDLSLPKMVVQVIYDKGYQTAEAIQAFIAK- 58 Query: 65 IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 + DP +L D +KA R+ QA+ + E+I+I+GDYD DG S ++ L N + Sbjct: 59 -EPVFYDPFLLKDMEKAVSRLHQAVEDYEEILIYGDYDADGITSTTILYETLEMLGANVS 117 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 Y+P+R DGYGPN + +I +G QLI+T D G ++A+ YA +QG+DVI+ DHH++ Sbjct: 118 FYLPNRFDDGYGPNKDVYAYYIKKGTQLILTCDNGVAGHEAVAYAKDQGVDVIITDHHEI 177 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 AYA+V+P + G L AGV + + L LLD+ Sbjct: 178 GDSLPDAYAIVHPRHPEGQYPFGDLAGAGVALKLATAL-----------LGETPSDLLDV 226 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGP 303 A+ TV D+V L NR V GL + GL+ E+ +I I + +G+++GP Sbjct: 227 AAIGTVADLVSLTDENRVIVASGLDQMKHTERLGLQMFFEKESIQPDQIDEQTIGFILGP 286 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+G+ N G + L S D QE+ L LD N R+ + M+ +AEA V + Sbjct: 287 RLNALGRLGDPNPGVQFLTSFDDQEVGELVELLDSENNARKAIVDKMVTEAEAIVDGEG- 345 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIG 422 Q +I++ + WH G++G++A+RL EK+ RP+ +S E+G GSGRSIEG D+ Sbjct: 346 --QLPQMIILGQEGWHEGVLGIVASRLVEKYHRPTILLSKKPENGSYKGSGRSIEGIDLF 403 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 +++ + K GGH MAAG+TV F KIDG+ Sbjct: 404 QVLQA--GKDYADKFGGHEMAAGMTVAIDQFEAWKSALLDRVAEFEAVYTQQTPLKIDGI 461 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSET 540 + + + + I L+ P+G N P+F + +L I+++ L++T D +T Sbjct: 462 IGITDITLENIKALDPIKPFGTDNRQPLFLIKDVQLSQIQLIGKDKNTLKLTVADADVKT 521 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 IAF+ + + V L +N W G++ Q ++ D F + Sbjct: 522 -SMIAFKSGAL----AKQLVANEPIDVVVTLSINAWNGNQSPQAQIKDIRQSSKSIFDLR 576 >gi|253826203|gb|ACT36387.1| single stranded specific exonuclease [uncultured bacterium L11E10] Length = 598 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 178/577 (30%), Positives = 274/577 (47%), Gaps = 34/577 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++P ++ RV R ++D A+ P + L P P +L+ D A + +AI N I++ Sbjct: 21 SMPPLLQRVYAARG-ALDQAQA--RPRLAQLHP-PQLLSGMDAAVALLAEAIANDRHIVV 76 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L + + +P+R+ GYG +PSL+ + L++TV Sbjct: 77 VGDFDCDGATACAVAVRGLVMLGARHVSPAVPNRVTHGYGLSPSLVSELAELKPDLLVTV 136 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A G V+V DHH PA+A+VNPN D+ L GV+F Sbjct: 137 DHGIACHAGIAQARALGWQVLVTDHHLPGPTLPPAHAIVNPNLAGDVFPSKSLAGVGVMF 196 Query: 217 LVLVLIYRILRQDNK--------------VPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 VL+ + R + D+ DL SLLDLVA+ TV D+VPL NRA Sbjct: 197 YVLLALRRHVFGDHPDRGEQTVAIEGRASQQKRPDLNSLLDLVAVGTVADLVPLDANNRA 256 Query: 263 YVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRL 320 V GL R QG GL+ALIE ++A ++G+ I P +NA GR+ + LG Sbjct: 257 LVAAGLRRLRAGQGCAGLRALIEVCGRRAQTLSAADIGFAIAPRLNAAGRLEDMALGIAC 316 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ D+ +A L +N RR ++ M ++AE + + + + WHP Sbjct: 317 LLCDEDGPAREMAGILHAINTERRGVQQQMTDEAELALSRVTLGGEMPLALCLFDREWHP 376 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVK 436 G+VGL+A+++K++ RP A + E G GS RSI GF I ++ A G+L K Sbjct: 377 GVVGLVASKMKDRVHRPVIAFAPAEPGSSALRGSARSIPGFHIRDALAAVDARHPGLLQK 436 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHAMAAGL+++ + F A + A + DG L + A + L Sbjct: 437 FGGHAMAAGLSLDLAHLPAFEAAFAAHAAAALDATLLQAELPSDGELLPHEFDRAHAEAL 496 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGE 555 GP+G G P+F ++ R V HL++ Q + L AI F G Sbjct: 497 RDGGPWGQGFAEPLFDG-VFEVIDWRAVGERHLKLVLRCPQRAAPLNAIHFNGLG----- 550 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++H+ L + +RG + QL + P Sbjct: 551 --AEPPPAQVHLVYRLVPDDYRGGEAIQLIIEHCVPA 585 >gi|87303468|ref|ZP_01086251.1| RecJ exonuclease [Synechococcus sp. WH 5701] gi|87281881|gb|EAQ73844.1| RecJ exonuclease [Synechococcus sp. WH 5701] Length = 642 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 161/581 (27%), Positives = 272/581 (46%), Gaps = 28/581 (4%) Query: 16 FRWVSLLG---QEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPD 71 RW + + + A + +P + VL R + ++ L P PD Sbjct: 21 QRWQLPVPLQPSQDEDLAREMA-ALGLPPELLAVLRRRGYDSPEAIRELLEPPPA---PD 76 Query: 72 PLI-LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P + D A +R+++A +E + I GDYD DG S AL++ L IP R Sbjct: 77 PRLHFADLAVAVQRLMRACAEAEAVAICGDYDADGMTSTALLVGVLERLGARPQAAIPSR 136 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +GYG N ++E+ EG +L++TVD G + +AL A + G++VI+ DHH + +E P Sbjct: 137 QDEGYGLNAGMVERLWGEGVRLLVTVDNGIAAREALDRARDLGVEVILTDHHTLPAEHPP 196 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 AL++P + S L G+ +L+ +++ L + + + LDL + TV Sbjct: 197 YLALLHPACTPEGSPYRGLAGVGLAYLLAMVLATELGRADATAMA------LDLFCIGTV 250 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGG 309 D+ PL+G+NR ++ GL PGL+AL P+ A + + + P INA G Sbjct: 251 ADMAPLLGVNRRWLRDGLRRLHASSLPGLQALQRLAGLGEEPLDATAVAFKLAPRINAVG 310 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G+ L LL + D LA + LN+ RR + A+ +A A V + D + + Sbjct: 311 RLGDPALVVDLLTTSDHDRAMALAQDCEALNRQRRELCEAIEAEAVALV--EADGPEPSP 368 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 +++ WH G++G++AARL E++G P ++ E G+ S R+ GF + + +S Sbjct: 369 FVLLAQTHWHHGVIGIVAARLVERYGLPVALLAGEGGGRLRASVRAPRGFAVDQALSHCG 428 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +L + GGH A G +V+ L + + A + + + + + L + Sbjct: 429 T--LLERHGGHPAAGGFSVKAERLADLHEQLNRLAASWLGDRGSGSPVEPEACLALHRIG 486 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 L+ P GAG P PVF ++ S R++ HLQ+ E Q L+AIA+R Sbjct: 487 RGFWRDLQRLEPLGAGLPAPVFWSNACRVISQRLLRGGHLQLELEQQ-GSRLRAIAWRWQ 545 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + + + V L + W+G +R QL ++ Sbjct: 546 GEG-------TVPELVDVAYRLRSDSWQGEERLQLELVGLR 579 >gi|282900800|ref|ZP_06308740.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281194330|gb|EFA69287.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 607 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 163/601 (27%), Positives = 280/601 (46%), Gaps = 36/601 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAK-DFLNPSIRLLMPDPLI 74 RW ++ A + + + I+ ++L+NR + F+NP L Sbjct: 13 QRWHI--AKQNQELAQNLASVNNVSPIIGQLLINRGMETPEIATRFINPECINLPSPLDE 70 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D + + AI N EKI I GDYD DG S AL++R L N + IP R+ +G Sbjct: 71 FPDLVASVELLASAIRNHEKIAICGDYDADGMTSTALLLRSLGSLGANIDYAIPSRMHEG 130 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N ++E+F +EG LI+TVD G +++ + A G+ VI+ DHH + + A A+ Sbjct: 131 YGINKRIVEEFHSEGVSLILTVDNGIAAFEPIARAKELGLKVIITDHHDLPPQLPVADAI 190 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + S L GV +++ V + + L++ + + +LDL L T+ D+ Sbjct: 191 LNPKLISLSSPYRGLAGVGVAYVLAVCLAQHLQK-----ITGLVQPMLDLFTLGTIADLA 245 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---------------PITAENLGY 299 PL G+NR ++ +GL + PG++ALI+ + + E++G+ Sbjct: 246 PLTGVNRRWIKRGLKSLYKSNLPGVQALIQVSGVQPSMGENQQVSKAQNSKSLKPEDIGF 305 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 +GP INA GRIG + LL +DD AM+ + +N R+ + + +A V Sbjct: 306 RLGPRINAVGRIGNPQIVIELLTTDDMGIALERAMQCEQINAERQKICEEIQGEAILLVE 365 Query: 360 TQC-DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 ++ Q V+VV D WH G++G++A+RL E++G P F ++E + GS R I Sbjct: 366 DLYAQNLHQDRVLVVVKDNWHHGVIGIVASRLVERYGVPVFIGTYENNHLVRGSARGIPE 425 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 F++ + F +L K GGH AAG ++ N +FA+ + P+ + Sbjct: 426 FNVFDALEF--SSDLLYKYGGHKAAAGFSLPAANLENFRLRLSEFANQCLEVQHLKPLLR 483 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE---S 535 IDG +N VN L L P G NP+P+F P ++ +++ +++T Sbjct: 484 IDGQINLCQVNRDLFKQLNILHPCGIENPDPIFWTPQVRVVEQQMIGKGSIKLTLAQIID 543 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 ++A+A+R + + L N + G+ +L ++ + + Sbjct: 544 NIRYEIRALAWRWGDYF-------PLPFTIDIAYKLRENNFNGANDIELELVGVRLPQQY 596 Query: 596 H 596 H Sbjct: 597 H 597 >gi|7453624|gb|AAF62912.1| RecJ [Neisseria gonorrhoeae] Length = 566 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 166/562 (29%), Positives = 259/562 (46%), Gaps = 28/562 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLASLLPY-QSLTNCEAAAGRLADAVERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + A+ + L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACAVGLDGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + ++ +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQALGLDVIVTDHH-LPADTVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL + LR+ N +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLTALRAELRRRNYFSDGIKEPNLGGLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML A Q V D +H G+VG++A+RLK+ Sbjct: 317 AARLNNLNIERREIEQSMLRDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + + DG L A + + L + +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTYITDGSLPACDITLEQAQNL-ACHVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H + + +D +A+ +R + + Sbjct: 494 F-TDEFHVVRQQPLGAEGKHKKAWLQ-KDGCEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 N WR + QL + Sbjct: 543 YRPVANEWRNNLELQLYMDYWE 564 >gi|303247420|ref|ZP_07333692.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio fructosovorans JJ] gi|302491116|gb|EFL51008.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio fructosovorans JJ] Length = 567 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 178/579 (30%), Positives = 272/579 (46%), Gaps = 23/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 RW+ A + + +A +L R ++ A D +L+P +R LM P Sbjct: 3 KRWIFPTADVAPQTADVLADALGVSPTLAALLYRRGLTTAEAMDAYLSPGLRRLMA-PGA 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D AA + Q++ +K+ ++GDYDVDG + AL++ FL +P+R +G Sbjct: 62 IPGMDAAAALLAQSLAQGKKVAVWGDYDVDGITATALLVDFLRERGYAPLWRLPERAAEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E EGAQ+++TVDCG +A+ A G+ VIV DHH E PA A+ Sbjct: 122 YGLNIPGIEALAGEGAQVLVTVDCGIGGVEAVARAKELGLAVIVTDHHLPGPELPPADAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P D L GV F ++ I R+L + D+ LLDLVAL T+ DVV Sbjct: 182 VDPKLADGPGT--DLAGVGVAFFLVAAINRLLPGEPS-----DVRRLLDLVALGTLADVV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIG 312 PL G NR GL++ PG+ AL E + + A + + + P INA GR+G Sbjct: 235 PLRGPNRILAKNGLLLLAEARRPGVHALKEVSGHNPKATLGASQVTFGLAPRINAAGRMG 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL++ D LA LD N RR E A+L +A Q D + Sbjct: 295 RPDAALDLLLAPDLDVARPLAADLDAENARRRAEEDAILTEAL----AQADASPNGHGLT 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + WH G++G++A+R+ E+ RP+ ++ +E G GSGRSI D+ +++ + Sbjct: 351 LFAPHWHQGVIGIVASRVAERRYRPTLILTADEAKGVLKGSGRSIPECDLHGLLTE--IQ 408 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH AAGL++E N L F + A + + TP +D L V Sbjct: 409 DVLRTFGGHRQAAGLSIEPDNLALLTRRFDEAAARALGPTLPTPSLTVDAELAFDGVTAT 468 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYG 550 I + P+G GNP PVFA P + + R H+ +T TL+ + + Sbjct: 469 FIREIGLMEPFGCGNPEPVFASPPVSVVATRPFGQNHVALTLRDPGAGITLRGKGWGMA- 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 GE + +G + V + Y+ G +LR+ D Sbjct: 528 ---GEVGTRPKGATVRVAFSPKITYFSGVPEIELRLRDV 563 >gi|320353881|ref|YP_004195220.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobulbus propionicus DSM 2032] gi|320122383|gb|ADW17929.1| single-stranded-DNA-specific exonuclease RecJ [Desulfobulbus propionicus DSM 2032] Length = 585 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 165/573 (28%), Positives = 277/573 (48%), Gaps = 26/573 (4%) Query: 34 TQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS 92 ++ IP + ++ +R + +++ + FL P + +L P P + +A IV A + Sbjct: 25 AKEFRIPRQLGEIMYHRGLRTLEAVQAFLYPQLSML-PSPDSMKGIGEAVDSIVHACTTA 83 Query: 93 EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ- 151 I I GDYDVDG + AL+ F + ++ + YIP+R+ + YG + +++ + + + Sbjct: 84 SPIFIHGDYDVDGITATALLTVFFNEIGIDTHYYIPNRLEERYGLSVRSIDRLLAQSREA 143 Query: 152 ----LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 L+ITVDCG ++ + YA +G+ VI+ DHH+ ++ A AL+NP + D Sbjct: 144 GRGGLLITVDCGISAVREVAYARERGLVVIITDHHEPQATLPCADALLNPKQHDCRFPFS 203 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 L GV F ++V + + + +L LDLVAL TV DVVPL+G+NR V Sbjct: 204 QLSGVGVAFFLIVALRKAFMERGLFAARSLNLKKYLDLVALGTVADVVPLVGVNRILVRA 263 Query: 267 GLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325 GL V + PGL +L E I I AE++ + + P INA GR+G LG LL++ D Sbjct: 264 GLEVLSAKNRPGLLSLCECCGIGHREILAEDISFKLAPRINAAGRLGVPRLGVELLLAKD 323 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385 A +L+ LN R+ +E + L E + Q + + V HPG++G+ Sbjct: 324 HAGARRAADELERLNTARKQLEGSALAAIEQQCAHQVEA--GVDGLAVYHADCHPGVLGI 381 Query: 386 LAARLKEKFGRPSFAISFEEDGKG----IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 LA+++ E+F RP+ + ++ + GSGRS+ G + ++ G++ + GGHA Sbjct: 382 LASKIVERFHRPAIIFTDDQQHRAGTNLKGSGRSVAGVHLFHLLEQC--NGLIDQFGGHA 439 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITT-PVFKIDGVLNASAV-NIALIDMLESA 499 MA GLT+++ D F + ++ ID L ++ + L Sbjct: 440 MAVGLTIDKTLLPSFADLFNRQVTTRHAEVLRQGRGIVIDCHLTDKSILTMEFAWALRLL 499 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 P+G GNP P F +L + VN HL+ + I FR L Sbjct: 500 QPFGEGNPEPTFLLSREQLVQPKGVNG-HLRFQLRGANGHVFPGIGFR-----LAPAGRN 553 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G + + HL +++RG+++ Q++ L P Sbjct: 554 FHGSQ-DLVFHLKRSWFRGTEQTQIQALHLVPH 585 >gi|299144023|ref|ZP_07037103.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518508|gb|EFI42247.1| single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 589 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 173/601 (28%), Positives = 296/601 (49%), Gaps = 39/601 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 +W ++ + I + +L NR++ + + FLNP++ L PL+L Sbjct: 3 KWFLKNTKDLTLDYEKL----NINKYICNILFNRDIDTEEKLEKFLNPNLEDLHT-PLLL 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D KAA ++ ++ ++KI I GDYDVDG S ++ + LS+ N + IP+R+ DGY Sbjct: 58 PDLIKAANILINSVATNKKIRIIGDYDVDGVMSTYILYKGLSYLKANVDYRIPNRVSDGY 117 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK------SEEI 189 G N L+++ +G LIIT D G + D +QYA GI VIV DHH+V Sbjct: 118 GINLRLIDEARTDGIDLIITCDNGIAARDEIQYAVENGIGVIVTDHHEVPVDTEKKELLP 177 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 A A+V+P R +C A V + ++ +Y+I N + L+ VA+AT Sbjct: 178 NALAIVDPKRESSKYPFREICGATVAYKLITYLYKI----NGIEDEKLYSDFLEFVAIAT 233 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAG 308 +CDV+PLI NR V KGL + N G+KA+I + ++ I+A ++G++IGP+IN+ Sbjct: 234 ICDVMPLIDENRVLVFKGLEYLNKTKNSGIKAIINAADLSNNLISAYHIGFIIGPTINSS 293 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +++ +LL+ +D A L LN R+ + E+ + K++ + + +++ Sbjct: 294 GRLESADIAVKLLLEEDYNVALKYATYLRELNSKRQKLTDDGFEKID-KIVNEFNLLEKF 352 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 V+++ ++G++A R+KEK+ RP+ ++ + GSGRSIEGF++ + VS Sbjct: 353 PVLILRDKEIDESVIGIIAGRIKEKYNRPAIILT-TSKDELKGSGRSIEGFNLFEHVSA- 410 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +L + GGHAMA GL++E NF + + + ID +N S V Sbjct: 411 -SKELLSRFGGHAMACGLSLEEENFKKFVIDVNN--KSNLTKEDLIKKVYIDTQINLSDV 467 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAF 546 +I+L +E P+G GN P+FA ++ V ++M ++ AI F Sbjct: 468 DISLATDIEKLNPFGNGNSKPLFATRELSIRKFNVFGKNKNVIKMVIGDSITQR-DAILF 526 Query: 547 RVYGTPLGEFLMQS-------------RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L + ++ +T +N +RG+ +L++ E Sbjct: 527 ENIDEFLDKISKYYNQDEIYKLKNNMTNNIKLDITYIPEINSFRGNDNIELKISHYRVSE 586 Query: 594 G 594 G Sbjct: 587 G 587 >gi|171463254|ref|YP_001797367.1| single-stranded-DNA-specific exonuclease RecJ [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192792|gb|ACB43753.1| single-stranded-DNA-specific exonuclease RecJ [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 601 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 163/581 (28%), Positives = 264/581 (45%), Gaps = 36/581 (6%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 A + Q + ++AR+ R + L+ ++ L+ P+ L +C A + Sbjct: 11 KRTATWLAQS-GLHPLLARLYAARGLQSPEE---LSLDLKQLI-SPIELKNCINTASLLA 65 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIVDGYGPNPSLME 143 + E ++I DYD DGA + A+ +R L +P+R GYG P ++E Sbjct: 66 DILEKKEPMLIVADYDCDGATACAVGLRGLRMLGGPDTPIQFLVPNRFTMGYGLTPEIVE 125 Query: 144 --KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 N + +ITVD G S + A G++VIV DHH A A+VNPN+ Sbjct: 126 LASQKNPKPKYLITVDNGIASEAGVNRAKELGMEVIVTDHHLPGDHLPKALAIVNPNQPG 185 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGL 259 L GV+F +LV + LR+ K + +LLDLVAL TV D+ L Sbjct: 186 CTFPSKALAGVGVMFYLLVALRAELRKRGKFTNKTQPKVENLLDLVALGTVADIAQLDRN 245 Query: 260 NRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 NR V GL R + +LG+ IGP +NA GR+ + LG Sbjct: 246 NRVLVSNGLKRIRAGVSQPGIEALFQAATRDPRKANTFDLGFAIGPRLNAAGRLADMTLG 305 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD--IQQASVIVVEG 375 RLL++D++ E LA +LD +N+ RR++E+ E A + + + + + I + Sbjct: 306 IRLLLTDNTDEAMTLAHELDHINRERRVIETGTQETALSHLAEDQLSGTMSERNSICLWN 365 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---KGIGSGRSIEGFDIGKMVSFA--VE 430 WH G+VG++A+RLKE+F RP+ + + + GSGRS+ GF + + E Sbjct: 366 PEWHQGVVGIVASRLKERFNRPAIVFAPADGNTGDELRGSGRSLTGFHLRDALDLVSKRE 425 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+++K GGHAMAAGLT+ + +F + FQ+ A ++ + DG L Sbjct: 426 PGLILKFGGHAMAAGLTIRKGDFEKFDACFQQVASELLTDELLERRHPHDGGLEPFEFTP 485 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD----SETLQAIAF 546 + D+L +G G P P+F + ++ ++ HL++ S+ L A+ F Sbjct: 486 EIGDLLAE-EIWGQGFPQPIFYG-DFEITQQSLMKEKHLRLMLRPLGLGASSKPLTAVWF 543 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 QS + + L + ++G R QL + Sbjct: 544 NRT---------QSLPAKAKLAYRLVTDRYQGQARVQLMIE 575 >gi|300947613|ref|ZP_07161785.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 116-1] gi|300452810|gb|EFK16430.1| single-stranded-DNA-specific exonuclease RecJ [Escherichia coli MS 116-1] Length = 496 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 160/501 (31%), Positives = 251/501 (50%), Gaps = 16/501 (3%) Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD G + Sbjct: 1 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 60 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 S+ +++A + GI VIV DHH A A++ PN D L GV F +++ Sbjct: 61 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIITPNLRDCNFPSKSLAGVGVAFYLMLA 120 Query: 222 IYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + LR +L LLDLVAL TV DVVPL NR +G+ R + Sbjct: 121 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 180 Query: 277 PGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ D+ E +LA + Sbjct: 181 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 240 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 LD LNQ R+ +E M +A + + + WH G+VG+LA+R+KE+F Sbjct: 241 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 300 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVN 452 RP A + DG GSGRSI+G + + G+++K GGHAMAAGL++E Sbjct: 301 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 360 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 F F + + + DG L+ + + + + +L AGP+G P P+F Sbjct: 361 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 420 Query: 513 FPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 + +L R+V HL++ E L IAF V + + + + + L Sbjct: 421 G-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NGVREVQLAYKL 475 Query: 572 CVNYWRGSKRCQLRVLDASPV 592 +N +RG++ Q+ + + P+ Sbjct: 476 DINEFRGNRSLQIIIDNIWPI 496 >gi|126643325|ref|YP_001086309.1| ssDNA exonuclease [Acinetobacter baumannii ATCC 17978] Length = 504 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 165/510 (32%), Positives = 246/510 (48%), Gaps = 16/510 (3%) Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KF 145 QAI +KI+I GDYD DGA S ALMM L + +PDR GYG P++ E Sbjct: 3 QAIDEQKKIVIVGDYDADGATSTALMMLVLRDMGAQVDYLVPDRFKYGYGLTPAIAELAH 62 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVD G +S+ + A G+ VI+ DHH E A A+VNPN+L Sbjct: 63 HTYQPDLLITVDNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGCEFP 122 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 L GV F VL + + + K + LDLVAL T DV L NR V Sbjct: 123 SKALAGVGVAFYVLANLASLRNRQGKSTS--KVTQYLDLVALGTYADVAVLDYNNRILVD 180 Query: 266 KGLMV-ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 G+ + Q G+ AL++ + I A++LG+++GP INA GR+ +G L++ Sbjct: 181 AGVKRIQQHQCRVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRIGIECLLA 240 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEGDRWHPGI 382 D + +A +L+ LN +RR +E M +QA + + + Q + +V+ + WH G+ Sbjct: 241 DTMETAYPIAQQLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFEENWHQGV 300 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGI--LVKGGG 439 +G++A RLKE+F RP+ + +EDG GS RSI+G I + E+ + GG Sbjct: 301 IGIVAGRLKEQFHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPELVSHFGG 360 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HA AAGLT+ + NF F + I DG L SA+ + ++ +E Sbjct: 361 HAAAAGLTIRKENFEAFKTVFNDCVAAM-DESIFQATLWTDGELPVSALQLDTLNWIEQL 419 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 GP+G P P F + K+ R + HL++ D + AIAF G F Sbjct: 420 GPWGQKFPLPQFEG-HFKVIDFRWLKETHLKLRLAI-DQYSFDAIAFNTA----GRFEFD 473 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +H+ + N + G+ QLR++ Sbjct: 474 PMRDHVHLVYEIDRNVFNGNVSLQLRIVHL 503 >gi|221633177|ref|YP_002522402.1| single-stranded-DNA-specific exonuclease RecJ [Thermomicrobium roseum DSM 5159] gi|221156347|gb|ACM05474.1| single-stranded-DNA-specific exonuclease RecJ [Thermomicrobium roseum DSM 5159] Length = 561 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 173/584 (29%), Positives = 263/584 (45%), Gaps = 34/584 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +RW R + ++ A+ ++A VL R + + + + FL P + L PDP Sbjct: 4 YRWREP------ERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDL-PDPAA 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D +A + + S +++FGDYDVDG + L+ + + +P R+ DG Sbjct: 57 LPDSGRAVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDG 116 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYA 193 YG + + L++TVDCG+ +DAL+ G+ VIV+DHH A Sbjct: 117 YGFQRHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELA 176 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 V+ R D L A GV + L+ N L LVAL TV DV Sbjct: 177 FVSVARPDAPPVFRTLSAVGVAYQFARLLL----------GNEAASRWLPLVALGTVADV 226 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS----SPITAENLGYMIGPSINAGG 309 VPL+G+NR V GL GL+ L + +T+ + GY++GP +NA G Sbjct: 227 VPLVGINRTLVALGLKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAG 286 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + L LL++ D+Q E LA KL+ LN R+ ML +AE ++ Sbjct: 287 RMDDPRLALELLLTADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDALGS---LPP 343 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+V+ W G+VGL A++L ++ RP ++ E GS RSI+GFDI + A Sbjct: 344 VLVLADSAWSVGLVGLAASKLVSRYARPVVLLA-RESEVSRGSARSIDGFDI--AAALAR 400 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +L+ GGH AAGLTVE L + A + ++D L+ + Sbjct: 401 CRDLLIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIA 460 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAIAFRV 548 + ++L PYG GNP P F + + I N HL+ T + D QA+ F Sbjct: 461 LETWEVLAQLEPYGHGNPVPRFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWF-- 518 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 E +R R+ + L + W G +R +L V+D P Sbjct: 519 --EGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRPT 560 >gi|319779401|ref|YP_004130314.1| Single-stranded-DNA-specific exonuclease RecJ [Taylorella equigenitalis MCE9] gi|317109425|gb|ADU92171.1| Single-stranded-DNA-specific exonuclease RecJ [Taylorella equigenitalis MCE9] Length = 566 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 158/579 (27%), Positives = 271/579 (46%), Gaps = 29/579 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + A + + ++AR+L +R V+ + L+ +P ++ + Sbjct: 5 QIKIRKFNPTIASTLESQ-GFNPLIARILASRGVTDKEQMS---TDWKHLL-NPNLMLNM 59 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 + A + AI + I+I DYD DGA + A+ +R L +A+ Y+P+R GYG + Sbjct: 60 EMTASYLADAIEQKKNILIVADYDCDGATACAVAIRGLRMFGYDADFYVPNRAETGYGLS 119 Query: 139 PSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 P L++ + + LIITVD G S D ++YA + GI V+V DHH A +++N Sbjct: 120 PELIDLVLAQRSKPDLIITVDNGIASVDGVRYANSLGIQVLVTDHHLPGDVLPDALSIIN 179 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDV 253 PN+ L GV+F +L+ + R+ + + +L+DLVAL TV DV Sbjct: 180 PNQRGCRFPSKALAGVGVMFYLLIALRTEFRRRGRWQSSNQEPPISNLVDLVALGTVADV 239 Query: 254 VPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPITAE-NLGYMIGPSINAGGRI 311 V L NR V KGL + + PG+ AL + + + + +LG+++GP INA GR+ Sbjct: 240 VKLDSNNRLLVDKGLSLMKHGKAKPGIIALFQVASCNYAKSTSLDLGFILGPRINAAGRL 299 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +LG + L++DD +E A +L+ +N+ R+ +E+ + ++A Q + Sbjct: 300 ADMSLGIKCLLTDDPEEAYAYASELNEINKKRKSIENTIKQEALNGDEYTTFSGQ---SL 356 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429 + W+PG++G++A+RLKEK+ PS + + GSGRSI + ++ Sbjct: 357 ISYSKDWNPGVIGIVASRLKEKYWVPSIVFASAGEELIQGSGRSIPDVHLRDVLDLVSKR 416 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 L K GGHAMAAGLT+ F K +I + + DG ++ + Sbjct: 417 HPNFLTKFGGHAMAAGLTMHAKYLEEFKVAFNKAVIDISGITEFNRIVETDGEIDVVWAH 476 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + +E +GAG P P+F + V+ H ++ E +D +AI F Sbjct: 477 LDTAKEIEKI-VWGAGFPPPLFNDK-FTVLDQTVLKEKHSRLRLE-KDGAEFKAIYFNFA 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 + + + VN + G + QL + D Sbjct: 534 E---------ALPNEVEFLFTMNVNQFNGYESLQLNIQD 563 >gi|187478022|ref|YP_786046.1| single-stranded-DNA-specific exonuclease [Bordetella avium 197N] gi|115422608|emb|CAJ49133.1| single-stranded-DNA-specific exonuclease [Bordetella avium 197N] Length = 568 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 176/580 (30%), Positives = 272/580 (46%), Gaps = 28/580 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + + +LA+ + I ++AR+ R V+ P L+P P LT Sbjct: 5 RLTVRSPDLPASLAL-EAAGIHPLLARLWAARGVTDPAQTKMAWP---ALLP-PGALTHS 59 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 AA + AI ++++I DYD DGA + A+ +R LS + + +P+R GYG + Sbjct: 60 GHAATVLADAIQAGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLS 119 Query: 139 PSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 P++++ +IITVD G S D + A GI V++ DHH A A+V Sbjct: 120 PAVVDLAVAHRAGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIV 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDV 253 NPN+ +L GV+F +++ + LR+ + L +L DLVAL TV DV Sbjct: 180 NPNQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYAADGGPRLDALSDLVALGTVADV 239 Query: 254 VPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 V L NR V +GL+ R + PGL+AL + +LG+ +GP INA GR+ Sbjct: 240 VKLDANNRLLVTQGLLRMRSGRMQPGLRALFAVAGREPRSASGFDLGFALGPRINAAGRL 299 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +LG L +DD + +A +LD +N+ RR +E+ M EQ A + D + + Sbjct: 300 ADMSLGIACLSTDDEDQALRMARELDAINRERRGIEAEMREQ--AMAAMEAPDAAAGATV 357 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--V 429 V WH G+VGL+A+RLKEKF RP+ A + D + GSGRSI + + Sbjct: 358 CVFDPSWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLRDALDLVSKR 417 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 G++ K GGHAMAAGLT+ + F + P+ + DG L + N Sbjct: 418 HPGLIRKFGGHAMAAGLTLGIDGYAAFAPAFDAAVRELTGRDHFEPLLETDGSLESGYAN 477 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + ML+ +GAG P+F ++S R+V HL+++ E ++ + AI F Sbjct: 478 AEVAGMLQQ-QVWGAGFAAPLFLDE-FIVRSQRLVGEKHLKLSLE-RNGQRFDAIWFGHD 534 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + L N W G QL + A Sbjct: 535 EM---------LPEHIQAAYRLEQNVWNGLVSAQLVIEYA 565 >gi|320103888|ref|YP_004179479.1| single-stranded-DNA-specific exonuclease RecJ [Isosphaera pallida ATCC 43644] gi|319751170|gb|ADV62930.1| single-stranded-DNA-specific exonuclease RecJ [Isosphaera pallida ATCC 43644] Length = 651 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 179/612 (29%), Positives = 261/612 (42%), Gaps = 47/612 (7%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W L R + P ++ +L+NR + + A+ F N + L DP L Sbjct: 38 WRILRHDRD--RIQELASALKAPMLIGHLLLNRGICDVSAARVFFNDDLLSLH-DPATLP 94 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGY 135 +AA R+V AI N+ I+I+ DYD DG ++ R L C + YIP R +GY Sbjct: 95 GVPEAADRLVHAIRNNRSIVIYSDYDADGVCGAGVLYRILKQCGARRLSYYIPSRFEEGY 154 Query: 136 GPNPSLMEKFIN-------------------------EGAQLIITVDCGSTSYDALQYAT 170 G N + A L++TVDCG T+ + A Sbjct: 155 GLNAEALRTLARQRRETHRNGLEGDRSSLKTSQTSEAHRADLVVTVDCGITAVREAELAR 214 Query: 171 NQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL-RQD 229 G+++I+ DHH + A +V+P LC AGV + + + R Sbjct: 215 ELGLELIITDHHHFVGDPPRADVVVHPRLPGSRYPFDSLCGAGVAYKLAWEVARRCYPNS 274 Query: 230 NKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS 289 + L L L LVALATV DV+PL G NR V GL + + PGL AL+E + Sbjct: 275 APLALRRQLDECLALVALATVTDVMPLKGENRIIVQHGLDLMNQDPGPGLAALVELI-AK 333 Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 PIT+ LG+ +GP IN GR+ + LLI DD + +A +LD NQ R+ +E Sbjct: 334 RPITSGVLGFHLGPRINVAGRLESAYKALDLLIGDDPERARSIAQELDQFNQQRQQVERE 393 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 M+E A AK+ Q D +VV WH G+VG++A+RL E F RP+ E DG Sbjct: 394 MVEHARAKIERQG-DPATRGGLVVVDPSWHVGVVGIVASRLTEIFHRPTLV-GVERDGLI 451 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GSGRS+ GF + ++ + GGH+ AAG + L F + + Sbjct: 452 SGSGRSVPGFSLYDALASC--RDLFESFGGHSAAAGFKLPANRLADLIQRFDDYCQAHLT 509 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAH 528 ID + + + L+ ++ P+G GN PV + K+ +VV Sbjct: 510 PTQRKKQILIDAETPLALLTLNLVRWIDRLAPFGLGNREPVLLAHDVKVVDSPKVVGSQQ 569 Query: 529 --LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 L+ S AI F+ + G + +N +RG QL V Sbjct: 570 STLKFKVCQAGSPVFNAICFKRTDHFAE---ILKPGTTGSLVFQAQLNSYRGQDSVQLEV 626 Query: 587 LDAS-----PVE 593 LD PVE Sbjct: 627 LDFRRPQQDPVE 638 >gi|221194665|ref|ZP_03567722.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium rimae ATCC 49626] gi|221185569|gb|EEE17959.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium rimae ATCC 49626] Length = 1122 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 167/576 (28%), Positives = 266/576 (46%), Gaps = 24/576 (4%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W L + + +QK ++ +VARVLV R ++ A+ FLNPS+ DP I+ Sbjct: 10 WNILPQVPKLEQ--EFSQKLSVNPLVARVLVARGCRTVAEAQKFLNPSLERDWFDPRIIP 67 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 ++AA R+ +AI + I +FGD+DVDG +S L+ L + YIP R +GYG Sbjct: 68 GLNEAADRVQKAIETHQCIAVFGDFDVDGMSSTCLLTLALRDFGADVRPYIPHRFGEGYG 127 Query: 137 PNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 + +E+ + LIITVD G S +Q +GIDV+V DHH+ + Sbjct: 128 LSVKALERVLADGAPNLIITVDNGIASAKEVQELVARGIDVVVTDHHEPAELVPQGVPVA 187 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + L AGV ++ + R L + S LD+ L T+ D++ Sbjct: 188 DPKLTSEC-PSRELAGAGVALKLVCELGRRLGK------PEVWRSYLDIATLGTLSDMML 240 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGES 314 L NRA V G+ PGL AL N + L + I P +NA GR+G + Sbjct: 241 LNSENRALVSAGIRQIHAGKRPGLVALAAAANQDISEVRADELPFSIIPRLNAAGRMGST 300 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 L LL+SDD QE +LA KL+ +N NRR +ES + +A + A IV+ Sbjct: 301 ELALDLLLSDDIQEATVLAGKLEEINANRRTIESQLTNEALLQAQET---YDGARAIVLA 357 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ WH G+ G++A+R+ ++ P + E+G GSGRS+ D+ V +L Sbjct: 358 GEGWHEGVKGIVASRVVNRYHVPCILFT-VEEGIARGSGRSVGSVDLFHAVEEC--SDLL 414 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 ++ GGH A G+T++ + +PA ++ ++ S +N A +D Sbjct: 415 IRFGGHQGAVGVTLKAEKIDEF-RHRLSEVLSQLPAKDFESTGEVSALVTLSEINAASLD 473 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPL 553 LE P+G GN P+FA +++ + + F + D ++ +I FR P Sbjct: 474 ALEVLQPFGQGNKKPLFAVQGVTMKNRNRAGAGGIHLCFMASDGVSSVASIMFRA---PH 530 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + G + + W+G + +L V D Sbjct: 531 IDVAANYDGA-VDIVFEAVNETWQGRTKPKLMVKDI 565 >gi|315924146|ref|ZP_07920372.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoramibacter alactolyticus ATCC 23263] gi|315622548|gb|EFV02503.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoramibacter alactolyticus ATCC 23263] Length = 691 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 166/577 (28%), Positives = 273/577 (47%), Gaps = 22/577 (3%) Query: 18 WVSLLGQ--EGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W Q E + I + +P VAR+ ++R + A +L P+ DP + Sbjct: 6 WKLRQPQSSESEAQIEEIAEICNVPKAVARIALSRGCEDAEAAMAYLEPNPEDFH-DPWM 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D A R++QA +K+ ++GDYDVDG +V++++++L ++ IP+R+ +G Sbjct: 65 LPDMRLAVTRLLQAKALKQKVCVYGDYDVDGTTAVSMLLKYLGEMGLDVCFKIPNRLTEG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +G +LI+TVD G + D + A GIDVIV DHH+ + + A A+ Sbjct: 125 YGMNAPAVRTLAADGVKLIVTVDNGIAAKDEILLANALGIDVIVTDHHECQGDLPEALAV 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ R D LC AG+ ++ + D DL ++ A+ATV D+V Sbjct: 185 IDAKRPDSAYPFSELCGAGIALKLIQALQMAEGTD------ADLREYIECAAMATVADIV 238 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL NR V GL ++ V+ +TA N+GY++ P INA GR+G + Sbjct: 239 PLQDENRLIVRLGLTSMNEDCQNPGIKALKIVSDIEMVTAGNVGYVLAPKINAAGRLGVA 298 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + L D+ + A L N+ R+ +E + +QA A V Q + Q I+ Sbjct: 299 DRVVDLYTGTDAAAITAAASFLKDENEKRQAIEKDIYDQAYAAV--QSKKLDQNVFILTA 356 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ WH G++G++A+RL+E + P + ++DG GS RS+EG ++ + +S + Sbjct: 357 GEGWHSGVIGIVASRLQETWYHPVIVVGIDDDGMARGSCRSVEGINVFEALSSC--ASLF 414 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GGHAMAAG ++ + N L +A + A DG L + ++ AL+D Sbjct: 415 ETYGGHAMAAGFSIRKENIAELTKRLAAWATDNGAAAHLKKTIYYDGDLTSRDLDWALMD 474 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 L + PYG NP PVF F +R + ++F ++ IAF G Sbjct: 475 GLATCEPYGVANPGPVFQFAATAPSDVRAMGKDGAHLSFRLGNTR---CIAFGA-----G 526 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + +N++RG +L V D P Sbjct: 527 DQAAAAVRGTLRFLAAPKINHFRGKDNIELVVRDLKP 563 >gi|310778376|ref|YP_003966709.1| putative exonuclease, RecJ [Ilyobacter polytropus DSM 2926] gi|309747699|gb|ADO82361.1| putative exonuclease, RecJ [Ilyobacter polytropus DSM 2926] Length = 571 Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 148/578 (25%), Positives = 277/578 (47%), Gaps = 22/578 (3%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76 W + + +++ + ++R+L+NR ++ + KDFLNP I DP Sbjct: 3 WEY--SDVAESLVDSKSKEWHVSKCLSRLLLNRGINTEDRLKDFLNPHIDKFR-DPFDFE 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 ++ ++I+ A EKI I+GDYDVDG + ++ ++ + YIP+R+ +GYG Sbjct: 60 RMNEVVKKIIDAKRKGEKIFIYGDYDVDGITAATFLVLVFRQIGIDVDYYIPNRMEEGYG 119 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + ++ +L+ITVD G S + +QYA GIDVI+ DHH++ E+ L+ Sbjct: 120 LDRKAINYINDKNGKLVITVDTGVNSIEDVQYANKLGIDVIISDHHKIIKEKGDEQLLII 179 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 + + L AGV V +Y L ++ L +D+V + TV DVVP+ Sbjct: 180 NPKFSEKYQFKFLAGAGVALKVAQAVYITLGEN-----LDKLYQYIDIVMIGTVADVVPM 234 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESN 315 I NR + KGL V ++ GL L++ + + IT ++ + I P +N+ GRIG S Sbjct: 235 IDENRIIIRKGLEVIKKTKVKGLVYLMKYLRLQNKDITTTDVSFFISPLLNSLGRIGTSK 294 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 +G+ I++D E+ + ++ N+ RR +E + + + ++ Q + + ++ Sbjct: 295 VGADFFINEDDFEIYNIIEEMKKSNKKRRELERTIFNEIDEEI--QKMKDKNFKYLFLKS 352 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 +WHPG++G++++RL K+ P ++ ++ G G S RSIEG +I L+ Sbjct: 353 SKWHPGVIGVVSSRLSIKYHVPVVLVAVKD-GIGKASCRSIEGINI--FNILREMADKLL 409 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGH +A+G N + + + KIDG + ++ ++ Sbjct: 410 RFGGHDLASGFIARTSNLDEIEKRLKGCL-EVPGKKKEIKTLKIDGTFSIENIDENILTD 468 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L+ PYG N +P+F + ++++ H + TF ++ + A+AF + Sbjct: 469 LQQVSPYGLENEHPIFLDEGLEFENLKKFGVENRHFK-TFIKKNGKRYSAVAFDLGSKID 527 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E + + R + + Y++G + Q+R+ D Sbjct: 528 EE---EYKLLRFDIAYYPEKVYYKGDETLQIRIKDFKV 562 >gi|257784324|ref|YP_003179541.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum DSM 20469] gi|257472831|gb|ACV50950.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum DSM 20469] Length = 1120 Score = 342 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 155/585 (26%), Positives = 273/585 (46%), Gaps = 25/585 (4%) Query: 8 GVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIR 66 G+E S RW L + ++ + +VARVLV R + A++FL+PS++ Sbjct: 3 GIEKST---RWSVLTQDVYLESLFE--KELHVTPLVARVLVARGFTDVAEAQEFLSPSLQ 57 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 DP + + A R+ +AI +KI +FGD+DVDG +S L+ L + Y Sbjct: 58 RDWLDPQCIPGMAEVANRVQKAIVEQQKIAVFGDFDVDGMSSTCLLTLALRRLGADVLPY 117 Query: 127 IPDRIVDGYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 IP R +GYG + + + ++ LIITVD G + + + QGIDV++ DHH+ Sbjct: 118 IPHRFGEGYGLSKEALARVLLDRKPDLIITVDNGIAAAQEVAWLLEQGIDVVITDHHEPA 177 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 + +P ++D L AGV ++ ++ ++ Q L +D+ Sbjct: 178 DLVPQGVPVTDPKLIEDC-PSRELAGAGVALKLVQVLGQLQNQPQLW------LDYIDVA 230 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPS 304 L T+ D++ L NRA V +G+ ++ PGL AL I+A+NL + I P Sbjct: 231 MLGTLSDMMMLNKENRALVSEGVKRLQKGLRPGLVALAAVAGQDIAQISADNLPFSIIPR 290 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GR+G +++ LL+++D++E +LA KL+ +N RR +E+ + ++A + Sbjct: 291 LNAAGRMGTTDIALDLLLTEDAEEATILAGKLEEINAERRAIEAKLTDEALEQAKEI--- 347 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 IV+ + WH G+ G++A+R+ ++ P + ++ G GSGRS+ D+ Sbjct: 348 YDGGHAIVLAKEGWHEGVKGIVASRIVNRYHVPCILFTIQD-GVARGSGRSVGSVDLFHA 406 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 V + V+ GGH A G+TVE + +P ++ ++N Sbjct: 407 VEQC--ADLTVRFGGHQGAVGVTVETSKIDAFRKRLSEVMAE-LPEEEFESSGEVTALVN 463 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 + I ID LE+ P+G GN P+F +++ V + F + + + + Sbjct: 464 LDEITINSIDALEALQPFGQGNKKPLFGVKGVVMKNRSRVGAGGAHLCFMASNGISSISS 523 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ TP E + G + + W+G + +L V D Sbjct: 524 I--MFRTPHVEAAAEYDGA-VDLIFEAVNETWQGRTKPKLMVRDI 565 >gi|257439395|ref|ZP_05615150.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium prausnitzii A2-165] gi|257198270|gb|EEU96554.1| single-stranded-DNA-specific exonuclease RecJ [Faecalibacterium prausnitzii A2-165] Length = 713 Score = 342 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 185/556 (33%), Positives = 295/556 (53%), Gaps = 25/556 (4%) Query: 42 IVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++A +L R ++ A L+ + DP++LTD DKA RI+ AI E I++FGD Sbjct: 63 LLAGILAARGITDPAEALTLLSG--EEELTDPMLLTDMDKACARILDAIDREETIVVFGD 120 Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160 YDVDG + AL+ + L N +P R DGYG + + ++ ++G QLI+TVD G Sbjct: 121 YDVDGVTATALLYQHLKGMGANVKCMLPSREGDGYGLSKNAIQSIHDKGCQLIVTVDNGI 180 Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220 ++ + ++A + G+D+IV DHH A A+V+P R DD S LC AGV F + Sbjct: 181 SALEEAEFAASLGVDLIVTDHHLPHDTLPKAVAVVDPRRADDTSPFKGLCGAGVAFKLCA 240 Query: 221 LIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLK 280 + + P L DL A+ TV DV+PL G NR V GL + + PGL Sbjct: 241 AL-------DGCPPEEMLDYCGDLAAVGTVADVMPLTGENRTLVKAGLHLLQHSDRPGLL 293 Query: 281 ALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339 AL++ V P+TAEN+ Y I P INA GR+ + +L++ +D + LA KL+ + Sbjct: 294 ALLDEVGLGGKPVTAENVSYAIAPRINAAGRMDSAVTALQLVLCEDEERAAELAHKLNEI 353 Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 N R+ E + + A+A++ + ++ VI++ G WHPG++G++A+RL EK GRP Sbjct: 354 NAARQETEGEIAKAAQAQLEAEPAILEDR-VILIWGRDWHPGVIGIVASRLVEKTGRPVI 412 Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 +S +E G+G GSGRS++GF++ ++ E +L++ GGHAMAAGL+V N L Sbjct: 413 VVSIDEHGEGKGSGRSVQGFNLHACIASC--EDLLLRFGGHAMAAGLSVREENLPELRRR 470 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 ++A P ++ TP + D ++ + + + L+ PYGA NP PVF ++ Sbjct: 471 LNEWAARECP-VLVTPPLECDLSIHLDRITVESVRRLDQLAPYGAENPAPVFLLEKAVVE 529 Query: 520 SIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578 + V+ H ++ Q + + A+ F + E L + G + L V + Sbjct: 530 GVYPVSEGRHCRLRLR-QGNACIYAVWFGM----HPEQLPYATGDVVDAALSLSV--YEA 582 Query: 579 SKRCQL--RVLDASPV 592 ++ QL R+L+ P Sbjct: 583 ARGAQLSGRILELHPA 598 >gi|307260941|ref|ZP_07542625.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869380|gb|EFN01173.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 524 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 166/508 (32%), Positives = 255/508 (50%), Gaps = 15/508 (2%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 20 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G P P+ Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSFPEPL 495 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDS 538 F K+ R++ HL++ E Sbjct: 496 FEGE-FKILQQRILGGKHLKLMVEQPFG 522 >gi|291557491|emb|CBL34608.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium siraeum V10Sc8a] Length = 672 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 168/578 (29%), Positives = 278/578 (48%), Gaps = 27/578 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ A+ + +P ++ +LV R + + + A+ + N + + DPL+ Sbjct: 2 KKWLVRNTDN--ALAMKLKTDTGLPMLLCSLLVGRGIYTAEQAQQYFNGT---ELSDPLL 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA + I +A+ N KI ++GDYD DG S ++ L + N YIP R +G Sbjct: 57 IADMDKAVQAIEEAVDNEVKITVYGDYDCDGVTSTVMLYTHLDAIGADVNWYIPTR-EEG 115 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + K +G LIITVD G ++ + + G+ ++V DHHQ+ A A+ Sbjct: 116 YGLNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAI 175 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP+R DD S L GV +++ + R + L DL A+ T+ DVV Sbjct: 176 VNPHRQDDSSPYKELAGCGVALKLIMALER--------DVEGVLEQYADLAAIGTIGDVV 227 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V +GL+ + N GL+ALI + IT+ + + + P INA GR Sbjct: 228 ALTGENRIIVKRGLLEMQYSENQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDS 287 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ Q E+ A +L+ LN R+ +ES +LE A+A++++ + V++V Sbjct: 288 PKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQLISDPKAF-NSRVLIV 346 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ GI+G+++ARL E + +P I E + GS RSIEGF + + E Sbjct: 347 CGEGWNHGIIGIVSARLLELYEKPCIVIG-IEGDEARGSARSIEGFSLYTALDACSEH-- 403 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG ++ + + +A P+ + + D S + I+ I Sbjct: 404 LTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKFPS-MPVMTTEADIEPELSDLEISSI 462 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 + L PYG N P+F N + S R + + T E + S+ + + F Sbjct: 463 ENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKYTSFTAEYKGSQ-FKFLCFGTSFDK 521 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + G ++ V H+ +N + K +RV D Sbjct: 522 FGYY----PGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555 >gi|167758794|ref|ZP_02430921.1| hypothetical protein CLOSCI_01136 [Clostridium scindens ATCC 35704] gi|167663534|gb|EDS07664.1| hypothetical protein CLOSCI_01136 [Clostridium scindens ATCC 35704] Length = 586 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 161/600 (26%), Positives = 281/600 (46%), Gaps = 42/600 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 +WV L I ++ I +A ++ NR+ + + +LN +I L D +++ Sbjct: 3 QWVLLRKGADF---EGIGKRFQISPRLACLIRNRDVIGDEAIAQYLNGTIADLY-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I ++I + GDYD+DG + +++ L A+ IP R+ DGY Sbjct: 59 KDMDKAVDILREKIAEQKRIRVIGDYDIDGVNATYILLEGLEKLGAEADSDIPSRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N L+E+ +G IIT D G + + + G+ ++V DHH+V EE Sbjct: 119 GLNIELIERAYQDGIDTIITCDNGIAAAEEIACGKRLGMTIVVTDHHEVPFEEEEDGKKY 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 PA A+++P + LC A + + ++ ++ D DL L++ VA Sbjct: 179 LLPPADAVIDPKQPGCEYPFKGLCGAAIAYKLVEALWEATGGD-----AEDLDYLIENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +ATV DV+ L NR +V +GL + +R +PGL++LI + I A ++G+++GP + Sbjct: 234 IATVGDVMELENENRIFVKEGLQMLKRTHSPGLRSLIACTGVDKDRIGAYHIGFVLGPCM 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + +E ++LA L LN +R+ M +EQA V T Sbjct: 294 NASGRLDTAKRTLNLLRAKSGKEADILAGDLKALNDSRKEMTDIAVEQARQIVDT--TKA 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + V+V+ H + G++A R++E++ RP+ ++ E+G GSGRSIE +++ + + Sbjct: 352 GKDRVLVLYLPGCHESLAGIVAGRIRERYYRPAIILTDAEEGI-KGSGRSIEAYNMYEEL 410 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 S +L K GGH +AAG+++ + N L + ID L Sbjct: 411 SRC--RDLLTKFGGHKLAAGMSLAKENIEELRRTLNDNCR--LEPKDMAEKVVIDMELPF 466 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQA 543 S V L++ L P+G GN PVFA N +L S R++ L++ + +A Sbjct: 467 SCVTEELVEELTLLEPFGKGNTKPVFAARNVELISGRILGKNRNVLKLQVKDSSQTAREA 526 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVT-------------GHLCVNYWRGSKRCQLRVLDAS 590 + FR L + + + + + +N + G + Q+ + Sbjct: 527 VCFRGAEQMLSLLEERYGKEAVDLLMKGRGGQMKLSVTYYPDINEYMGKRTVQIVITHYQ 586 >gi|229816635|ref|ZP_04446924.1| hypothetical protein COLINT_03684 [Collinsella intestinalis DSM 13280] gi|229807763|gb|EEP43576.1| hypothetical protein COLINT_03684 [Collinsella intestinalis DSM 13280] Length = 1126 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 154/577 (26%), Positives = 251/577 (43%), Gaps = 24/577 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 RW + + + +VAR++V + ++ + FL PS+ DP I+ Sbjct: 21 RWCIAPNNPELE--ERLASALGVAPLVARIMVAHGIGGVEEGRLFLTPSLERDWADPHII 78 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + A R+ +A+ + E I +FGD+DVDG S L+ L + +IP R +GY Sbjct: 79 PGMAEVAARVERAVRDGEVIAVFGDFDVDGITSTCLLTEALRQLGACVHPFIPHRFEEGY 138 Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G +++ + L+ITVD G + D + +GID++V DHH+ + Sbjct: 139 GLTAQALDRVVEACEPSLVITVDNGIAARDEVVALAGRGIDIVVTDHHEPSDLVPVGIPV 198 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +P +D+ S L AGV ++ ++ L Q S ++ AL TV D++ Sbjct: 199 TDPKMVDE-SPSRELAGAGVALKLVQILGERLGQPQLW------RSYTEVAALGTVSDMM 251 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 L NRA V G+ R PG AL + L + + P +NA GR+ + Sbjct: 252 CLTPENRALVADGIAHMRATARPGYIALAAVTRTDLSTITADALSFSLIPRLNAAGRMAD 311 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L LL++ D+ E LA L+ +NQ RR +E+ + QAE IVV Sbjct: 312 PTLALDLLLARDAVEAGRLAAALEEINQQRRAIEAELTGQAEELAER---SYDGGRAIVV 368 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G+ G++A+RL ++ P+ S EDG GSGRS+ ++ + V + Sbjct: 369 GGEGWHEGVKGIVASRLVNRYHVPALLFS-IEDGVARGSGRSVGSVNLFEAVEKC--SDL 425 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHA A G+T N L D + +PA +I + ++I I Sbjct: 426 LIRFGGHAGAVGVTCAVENLDALRDRLNAVLAD-LPAEDFEDRGEIAATVGLDELDIETI 484 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTP 552 + P+G GN P+ A + VV M F + D ++ AI FR Sbjct: 485 RQIGMLEPFGQGNRVPLLAARGVTMCDRAVVGKTGDHMRFIATDGAASVPAIMFRAPEVE 544 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + W+G + +L V D Sbjct: 545 ----QLVNCDTVVDLVFEAVAECWQGRVKPKLMVKDI 577 >gi|299136982|ref|ZP_07030165.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp. MP5ACTX8] gi|298601497|gb|EFI57652.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp. MP5ACTX8] Length = 609 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 172/599 (28%), Positives = 278/599 (46%), Gaps = 32/599 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +WV A + ++ +P +A +LV R + ++ A+ FL PS+ L DP ++ Sbjct: 11 QWVVAGKVSD--TAKQLERELGLPPAIACLLVCRGIETVAAARAFLAPSLDQLH-DPSLM 67 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR----FLSHCS--VNANMYIPD 129 DKA R+ A+ E ++I+GDYDVDG + L+ + + +IP Sbjct: 68 LGMDKAVARLRTALLLQEPVLIYGDYDVDGTVATVLLKTAAERAAAAMGVTADIRYHIPH 127 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SE 187 RI +GYG +E EG +LI++VD G ++ A + A G+D+IV DHH Sbjct: 128 RIREGYGMQELRIEAAAAEGVRLIVSVDTGIRAFAAAEEAERVGLDLIVTDHHLPDGAEG 187 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN---FDLLSLLDL 244 A A+VNPN+ LC A V F + + Q L L S L L Sbjct: 188 VPRAVAVVNPNQPGCEYPYKELCGAAVAFKLAQALLESSVQQEDERLRLREKTLPSFLKL 247 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIG 302 +A+AT+ D VPL G NR GL+ R+ GLKAL+E I + I+A ++G+ + Sbjct: 248 LAIATIADAVPLTGENRVIAALGLLELRKPSQAGLKALMELSQIDTSRAISATDIGFRLA 307 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P INA GR+ ++ + ++ D LA KL LN+ RR E+ L + E ++ Sbjct: 308 PRINAAGRMDIASDVVEMFLTRDPAMARTLAEKLHRLNEERRTTEAEALREIEERLAVMV 367 Query: 363 DDIQQ-ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + A+ +V++ WH G++G+LA+R+ ++ GRPS ++ E+G+ GSGRS+ GF + Sbjct: 368 ASPEGLAACLVLDDPAWHRGVIGILASRVVDRTGRPSLVLA-HEEGQAYGSGRSVAGFHL 426 Query: 422 GKMVSFAVEEGI---LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 ++ E + GGHA A G ++ L + ++A + A Sbjct: 427 LDALTSIDTEEDTQLFARFGGHAHAVGFSLPSSQVEDLRNRMARYAASKRTADDEITKLD 486 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL-QSIRVVNLAHLQMTFES-Q 536 D L + + LE GP+G GN PVF +L + +VV HL++T E Sbjct: 487 CDLELRLGEITADFLVALEQLGPFGNGNSEPVFLSYGVRLGIAPKVVKDRHLRLTVEDPD 546 Query: 537 DSETLQAIAFRVYGTPLGEFLMQS--RGKRMHVTGHLCVN---YWRGSKRCQLRVLDAS 590 D L +A+ + +G + + L N + G +L ++ Sbjct: 547 DGSRLGGMAWGRRTDWAARAREEGWVQGSLLDLVYRLRRNWHPDFGG---WELEIIAIR 602 >gi|240142185|ref|YP_002966695.1| Single-stranded-DNA-specific exonuclease protein [Methylobacterium extorquens AM1] gi|240012129|gb|ACS43354.1| Single-stranded-DNA-specific exonuclease protein [Methylobacterium extorquens AM1] Length = 614 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 222/586 (37%), Positives = 314/586 (53%), Gaps = 28/586 (4%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 E S+ G RW G++ + +P +A + R V+ + F P +R M Sbjct: 45 ETSLRGNRWSVPNEFAGVDPHDPLF----LPKQIA---LMRGVAPSALETFFKPMLRTSM 97 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIP 128 PDP L D D A RI +A+ E + + GDYDVDGA S A+M+R+L + A YIP Sbjct: 98 PDPSSLADMDAATARIAEAVRRGETVGLLGDYDVDGATSTAIMLRWLGSAGHDKAVYYIP 157 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE- 187 DRI +GYGPNP ++ GA L++ +D G+ ++ + +A +G+DV+V+DHH+ Sbjct: 158 DRIREGYGPNPGAVDAIAEAGATLLLVLDSGTLAHGPIAHARARGMDVVVVDHHEPSRTL 217 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLD 243 +P LVNP R DD SGQ +LC AG+ FL+ V + R+LR + D + LL Sbjct: 218 PLPDAILVNPKRPDDASGQTNLCTAGLAFLLAVSLNRLLRAEGYFDQAGIAPPDPMDLLG 277 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 L AL TV DVVPL GLNRA VV+GL + NPG++AL+E T G++ GP Sbjct: 278 LAALGTVADVVPLTGLNRAIVVQGL--PKLDRNPGIRALVEETG-EGEFTPRTAGFVFGP 334 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GRI ++ LG+ LL SDD E LA L +N R+ M+ M+E A A+ Sbjct: 335 CINAAGRIDDTRLGTLLLASDDPGETRDLARHLREINAQRQAMQKEMVEAAVARA--LSA 392 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + VIV+E WHPGIVGL+AAR++E +P+ + G S RS++GFD+G Sbjct: 393 EFADDPVIVIEDRAWHPGIVGLVAARVREATDKPAVVVGEFGKG----SCRSVDGFDMGT 448 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + A E+GIL+ GGGH MAAGLT+E L F A P ++D V Sbjct: 449 AIIRAREQGILIAGGGHRMAAGLTIEAGRLEELRRFVCGAAF-----DFERPPTEVDVVA 503 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 A ++ I LE+ PYGAGN P A + +R++ HL++ E T +A Sbjct: 504 EAGTASVEAIAPLEALAPYGAGNQQPAVAVVGGIARRVRILKERHLKLMLEGPSGST-EA 562 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 I F GT LG+ L S G + V G + V+ + R Q+++ DA Sbjct: 563 ILFNAVGTRLGDALAASEGLPVDVLGRMAVDEFNAQARVQIKIDDA 608 >gi|89902003|ref|YP_524474.1| single-stranded-DNA-specific exonuclease RecJ [Rhodoferax ferrireducens T118] gi|89346740|gb|ABD70943.1| single-stranded-DNA-specific exonuclease RecJ [Rhodoferax ferrireducens T118] Length = 576 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 171/589 (29%), Positives = 265/589 (44%), Gaps = 34/589 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 L+ + A A+ ++ I ++A++ R V + L+ + L+ P + Sbjct: 2 KILVREIPPRSAWAL-EQAGIHPLLAQLYAARGV---QSVQELDDGLTRLIA-PTEMLGL 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137 AA + AI + + I DYD DGA + A+ +R L + +PDR+VDGYG Sbjct: 57 SAAATLLADAIAADQTLCIVADYDCDGATACAVGIRGLRLLGAKHVSYIVPDRVVDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-----IPAY 192 + E+ GA ++ITVD G S++ + A G+ V+V DHH S + A Sbjct: 117 TSPISERVKASGADVLITVDNGIASFEGVATARALGLQVLVTDHHLPASRDGQIVLPEAD 176 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATV 250 +VNPN+ + GV+F VL+ + LRQ L +LL LVAL TV Sbjct: 177 VIVNPNQPGCTFASKSIAGVGVMFYVLLALRAELRQRGVFHAATQPKLDALLPLVALGTV 236 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPG--LKALIERVNISSPITAENLGYMIGPSINAG 308 DVV L NR V +GL R P + + T + G+ +GP INA Sbjct: 237 ADVVKLDANNRRLVAQGLKRVRALMLPTGLASLFVAAGRDAQVATTFDFGFALGPRINAA 296 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ- 367 GR+ + LG L++DD+ LA LD +N+ RR +E +M EQA A + DD ++ Sbjct: 297 GRLSDMTLGIECLLTDDAARGLELAKALDGINRERREIEGSMREQALAVAESLFDDNEEA 356 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIGSGRSIEGFDIGK 423 I V +H G+VG++A+R+K+K RP+F + + + + GSGRSI GF + Sbjct: 357 PPAICVFDPDFHEGVVGIVASRIKDKLHRPTFVFAQSKAPGREHELKGSGRSIPGFHLRD 416 Query: 424 MVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + G+L++ GGHAMAAG T+ +F + A + A DG Sbjct: 417 ALDLVAKRHPGVLLRFGGHAMAAGCTIAVEDFDAFEQSLSQVAREWLDAATLMRRLDTDG 476 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 L + L+D L +G G P F ++ S R+V HL + + Q + + Sbjct: 477 PLKPEYRRVELVDALHK-EVWGQGFAPPTF-SEEVEVLSQRLVGEKHLALKLKHQ-GQPV 533 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 I F R+ + L + W G +R + V A Sbjct: 534 DGIWFGHTE---------PLPARVKLAFRLDADAWNGVRRVRFLVEAAQ 573 >gi|167957482|ref|ZP_02544556.1| single-stranded-DNA-specific exonuclease RecJ [candidate division TM7 single-cell isolate TM7c] gi|169836046|ref|ZP_02869234.1| single-stranded-DNA-specific exonuclease RecJ [candidate division TM7 single-cell isolate TM7a] Length = 548 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 176/557 (31%), Positives = 280/557 (50%), Gaps = 27/557 (4%) Query: 45 RVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 ++L +RN+ D FL+P L DP +L D KA RI A EKI+I+GDYDVD Sbjct: 6 KILASRNIDKDKLNSFLSPDYDLEKGDPYLLPDMQKAVDRIKTAYEKGEKIVIYGDYDVD 65 Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 G ++ AL++ + +IP+R V+GYG ++K + A LIITVDCGS + Sbjct: 66 GISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIITVDCGSLCH 125 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 + + YA + GID +V DHH V PA A VNP L L GV F ++ + Sbjct: 126 NEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVAFKLVQALQ 185 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + L + + LLDLVAL TVCD+V L G NRA V G+ V ++Q GLKAL+ Sbjct: 186 KELDGLPEGYEKW----LLDLVALGTVCDIVKLTGENRANVYWGIEVMKKQRRTGLKALM 241 Query: 284 ERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 NI I+A+ LG++ GP INA GR+ ++L +LIS + + A +D LN + Sbjct: 242 AVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGDDALNKANYIDNLNSH 301 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 RR M+ + ++A D + V+V+ G W+ GI+G++AA++ EKF +P + ++ Sbjct: 302 RRQMQDDIFKEA----CKIALDYKDDDVLVINGKNWNHGIIGIVAAKILEKFKKPVYILA 357 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 ++G+ GS RS D + + I++KGGGHA AAG+T++ + Sbjct: 358 ENDNGETKGSARSFG--DFSAADAVRAADDIIIKGGGHAAAAGVTLKNDKISDFRQRVNE 415 Query: 463 FAHNIVPALI-----TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 F +++ +ID + S +N L+ + + P+G GNP PV Sbjct: 416 FYNSLQLNNQERYLLPKADVEID---DFSEINEDLVGKIATMEPFGNGNPEPVIKITAAD 472 Query: 518 LQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 + +++ + H++++ D ++ +AF E + G + +N Sbjct: 473 IVNVQHMGTDGQHIKLSARDSDGVVIRMLAFNA-----PENFLCKPGDTASIWFRPVINK 527 Query: 576 WRGSKRCQLRVLDASPV 592 W+G + + +L V Sbjct: 528 WQGIRSVEGELLHLQLV 544 >gi|91786912|ref|YP_547864.1| single-stranded-DNA-specific exonuclease RecJ [Polaromonas sp. JS666] gi|91696137|gb|ABE42966.1| exonuclease RecJ [Polaromonas sp. JS666] Length = 600 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 173/615 (28%), Positives = 268/615 (43%), Gaps = 60/615 (9%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A+ Q + ++A++ R V D L+ + L+P P L Sbjct: 2 KIQVRDVPPRSVWALQQG-GVHPLLAQLYAARGVRS---MDELDDGLGKLLP-PASLRGT 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGP 137 +AAR + A+ +KI + DYD DGA + A+ +R L N +PDR++DGYG Sbjct: 57 REAARLLADAMAAGQKICVVADYDCDGATACAVALRGLRLLGAQNVGYLVPDRVIDGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY----- 192 P + E+ GA +++TVD G S + + A G+ V+V DHH ++ Sbjct: 117 TPPIAERVKATGADVLVTVDNGIASLEGVARAKALGMQVLVTDHHLPALKDGQVVLPAAD 176 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP------------------- 233 +VNPN D + GV+F VL+ + LR+ Sbjct: 177 VIVNPNHPDCSFESKSMAGVGVMFYVLLALRAELRERGVFGRPAAGPPPGGTAPSGGSTA 236 Query: 234 ---------LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG--LKAL 282 L +LL LVAL TV DVV L NR V +GL R P Sbjct: 237 HEVASVGAIPQPKLDTLLPLVALGTVADVVKLDANNRRLVAQGLKRIRAGALPAGLAGLF 296 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 ++ T + G+ +GP INA GR+ + LG L++DD+ + LA LD +N+ Sbjct: 297 TAAGRHAALATTFDFGFALGPRINAAGRLSDMTLGIECLLTDDAARADELARMLDGINRE 356 Query: 343 RRLMESAMLEQAEAKVLTQCD-DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401 RR +E+ M EQA+ D D + I + +H G+VG++A+R+K+K RP+F Sbjct: 357 RRDIEAGMREQAQLAADAMIDEDEEPPPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVF 416 Query: 402 ----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGR 455 + ++ + GSGRSI GF + + G+L++ GGHAMAAG T+ F + Sbjct: 417 AASQAPGKEHELKGSGRSIAGFHLRDALDLVAKRHPGVLLRFGGHAMAAGCTIAEERFEQ 476 Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 Q+ AH + A T DG L A ++D L +G G P F Sbjct: 477 FEQALQQVAHEWLDAATLTRRLDTDGPLPAEYRRTDVVDTLHR-EVWGQGFAAPTF-SEE 534 Query: 516 HKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 ++ S R+V HL + + Q + + I F + R+ + L + Sbjct: 535 VEVVSQRLVGEKHLALKLKHQ-GQPVDGIWFGHTT---------ALPARVKLAFRLDADE 584 Query: 576 WRGSKRCQLRVLDAS 590 W+G KR + V A Sbjct: 585 WQGVKRVRFLVEAAE 599 >gi|317122081|ref|YP_004102084.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter marianensis DSM 12885] gi|315592061|gb|ADU51357.1| single-stranded-DNA-specific exonuclease RecJ [Thermaerobacter marianensis DSM 12885] Length = 818 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 183/580 (31%), Positives = 267/580 (46%), Gaps = 25/580 (4%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74 G RW A + + + ARVL R + L R + DP Sbjct: 3 GRRWRVRPASP--EAAARLVDALGVTPLTARVLAARGWTDVAVARQLLRG-RPPLHDPFR 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132 L D A RI +A+ E I+I GDYD DG A+ AL+ R L +YIPDR Sbjct: 60 LPDMAAAVDRIRRALARGEGILIVGDYDADGVAAAALLYRGLLDLEPDARVQVYIPDRHR 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG ++ GA L+ITVD G ++ L A +G+DVIV DHHQV+ PA Sbjct: 120 EGYGVPVGALDAATTMGAGLLITVDNGIAAHGPLAEARRRGLDVIVTDHHQVQDTLPPAL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A++NP+R D LC AGVVF +L + L + P+ + L A+ATV D Sbjct: 180 AVINPHRPDSGYPWRGLCGAGVVFKLLQAL---LGDEPASPVWWQLA------AVATVAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRI 311 VVPL+ NRA V +GL PGL AL E + + + A + +++ P +NA GR+ Sbjct: 231 VVPLLDENRALVQRGLEELAAAPLPGLAALAEAAGLGDTRLDAHGVAFILAPRLNAAGRM 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G + LL +DD LAM ++ LN+ RR E L QA +V + + + VI Sbjct: 291 GSAWQAWELLATDDLGRARALAMAIEQLNRLRRQQEELALGQALQRV-ERGEGVYGDEVI 349 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + WH G++G++A+RL + F RP+ +D + GSGRSI GF + + ++ Sbjct: 350 ALAHPTWHQGVLGIVASRLVDLFHRPALV-GRRQDHRITGSGRSIAGFHLFRALAAC--A 406 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 + + GGHA AAG T+ + L A + P +D V+ + +A Sbjct: 407 DLFERFGGHAQAAGFTLPADRWADLGARLADEARRHLGPDDRIPAVDVDAVVRPEELTVA 466 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 + LE P+G GNP PV A R V A + E A+AF + Sbjct: 467 AVRELERLAPFGEGNPEPVVALAGLPPAGARTVGGAGEHLRLEWPGG--WSAVAFGLGEL 524 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + +++ V V +RG +R L + D P Sbjct: 525 ----AEQVRQARQVEVAVRPRVGTFRGEERVDLHIQDLRP 560 >gi|295094224|emb|CBK83315.1| exonuclease RecJ [Coprococcus sp. ART55/1] Length = 627 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 167/624 (26%), Positives = 278/624 (44%), Gaps = 58/624 (9%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRL 67 ++ + W + N AI ++ + +VARV+ NR V+ + A +L+ Sbjct: 11 IDKYVKKPEWRVAGKRADFN---AIGERFGVSPVVARVITNRGVTGEKAIAMYLDGDWDS 67 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN----- 122 M DP ++ D +A I + + ++ +I I DYDVDG S +++ L Sbjct: 68 -MHDPALMKDMVEAGEIIKEKLSDNRRIRIISDYDVDGVTSNYILLLGLRRTWAALHGSC 126 Query: 123 ------ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176 + IP R+ DGYG N L++ I +G IIT D G + + ++YA +G+ V Sbjct: 127 ADDCTVVDYDIPHRVHDGYGINKRLIDAAIADGVDTIITCDNGIAAIEQVRYAKERGLTV 186 Query: 177 IVIDHHQVKSEEIP----------AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL 226 IV DHHQ+ EE A A+++ R D LC AGV F ++ +YRI Sbjct: 187 IVTDHHQIPFEESDGGERVYMLPQADAVIDNQRQDCEYPFKGLCGAGVAFKLIQYMYRIC 246 Query: 227 RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV 286 ++ ++++ LAT CD++ L+ NR YV L + NPGL AL+ Sbjct: 247 GIAES-----EVNEFMEILGLATNCDMMDLVDENRIYVKYALESLKDSRNPGLNALMRLS 301 Query: 287 NIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 + I+ +LG++IGP INA GR+G++ L+ D E A +L +N R+ Sbjct: 302 GRNEKKISTYDLGFLIGPCINAAGRLGDAKQSLEFLLERDPNVAEARARELLAVNNERKN 361 Query: 346 MESAMLEQAEAKVLTQCDDIQ-------QASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 M A + T + + V+VV H +VG++A+RLKE + RP+ Sbjct: 362 MTEAGARHITDMLETATVNGEFGQAATLADKVLVVYIPAVHESVVGIIASRLKEAYTRPA 421 Query: 399 FAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + E G GSGRSI+ +++ + GGHAMAAG ++E+ L Sbjct: 422 MVFTDAETPGILKGSGRSIDSYNM--FEELNRFREMFTAFGGHAMAAGFSIEKERLDELR 479 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 + A ++ TP ID + + +I L + +E PYG GN P+FA Sbjct: 480 RKLNEAA--VLTDEDITPKLMIDVAMPLAYNSIELTEQIERLEPYGKGNRKPLFAQAAVP 537 Query: 518 LQSIRVVNLAH--LQMTFESQDSETLQAIAF------RVYGTPLGE------FLMQSRGK 563 ++ +++ L++ ++ + AI F GE Q Sbjct: 538 VRRAQILGRNKNLLKLQLDTGYGRCVDAIDFDPDTFVNNIKQWFGEDECVKMLNGQPNAV 597 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587 + V + +N + G + Q+++ Sbjct: 598 VIDVAYYPTINEYMGRRSLQMKME 621 >gi|167749832|ref|ZP_02421959.1| hypothetical protein EUBSIR_00800 [Eubacterium siraeum DSM 15702] gi|167657144|gb|EDS01274.1| hypothetical protein EUBSIR_00800 [Eubacterium siraeum DSM 15702] Length = 672 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 167/578 (28%), Positives = 278/578 (48%), Gaps = 27/578 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ A+ + +P ++ +LV+R + + + A+ + N + + DPL+ Sbjct: 2 KKWLVRNTDN--ALAMKLKTDTGLPMLLCSLLVSRGIYTAEQAQQYFNGT---ELSDPLL 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA + I +A+ N KI ++GDYD DG S ++ L + N YIP R +G Sbjct: 57 IADMDKAVQAIEEAVDNEVKITVYGDYDCDGVTSTVMLFTHLDAIGADVNWYIPTR-EEG 115 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + K +G LIITVD G ++ + + G+ ++V DHHQ+ A A+ Sbjct: 116 YGLNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAI 175 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP+R DD S L GV +++ + R + L DL A+ T+ DVV Sbjct: 176 VNPHRQDDNSPYKELAGCGVALKLIMALER--------DVEGVLEQYADLAAIGTIGDVV 227 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V +GL+ + N GL+ALI + IT+ + + + P INA GR Sbjct: 228 ALTGENRIIVKRGLLEMQYSENQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDS 287 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ Q E+ A +L+ LN R+ +ES +LE A+A+++ + V++V Sbjct: 288 PKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQLIADPKAF-NSRVLIV 346 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ GI+G+++ARL E + +P I E + GS RSIEGF + + E Sbjct: 347 CGEGWNHGIIGIVSARLLELYEKPCIVIG-IEGDEARGSARSIEGFSLYTALDACSEH-- 403 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG ++ + + +A P+ + + D S + I+ I Sbjct: 404 LTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKFPS-MPVMTTEADIEPELSDLEISSI 462 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 + L PYG N P+F N + S R + + + E + S+ + + F Sbjct: 463 ENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKYTSFSAEYKGSQ-FKFLCFGTSFDK 521 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + G ++ V H+ +N + K +RV D Sbjct: 522 FGYY----PGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555 >gi|226953402|ref|ZP_03823866.1| Mg dependent 5'--> 3' specific ssDNA exonuclease [Acinetobacter sp. ATCC 27244] gi|226835858|gb|EEH68241.1| Mg dependent 5'--> 3' specific ssDNA exonuclease [Acinetobacter sp. ATCC 27244] Length = 543 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 166/538 (30%), Positives = 254/538 (47%), Gaps = 21/538 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P +A +L R V + + ++L P L D A I QAI ++I+I Sbjct: 20 GVPSFIAEILARRGVQSEQELE-----LKLKHLLPPTLKGIDAAVELIDQAIDQQKQIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITV 156 GDYD DGA S ALM+ L +PDR GYG P + E L+ITV Sbjct: 75 IGDYDADGATSTALMVLVLQEMGARVEYLVPDRFKYGYGLTPKIAELAKQSYQPDLLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A + VI+ DHH A A+VNPN+L L GV F Sbjct: 135 DNGISSHAGVETAQALAMQVIITDHHLTTKPTPTAEAVVNPNQLGCDFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 VL + Q + + LDLVAL T DV L NR + GL + Q Sbjct: 195 YVLAKLASHRVQQG--KSSCKVTQYLDLVALGTYADVATLDYNNRILIDAGLKRIQQHQC 252 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + + A++LG+++GP INA GR+ +G L+++D Q +A Sbjct: 253 RVGILALLDIAGRDAASLRAQDLGFVLGPRINAAGRMESMRIGIECLLANDMQTAYPIAQ 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E+ M +QA + + Q Q +V+ ++WH G++G++A RLKE+ Sbjct: 313 QLNQLNLERRQVETEMKQQALSALQHIQLTAEQIPPALVMFDEQWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + +EDG GS RSI+G I M+ +L GGHA AAGLT+ + Sbjct: 373 FYRPSLVFAPDEDGIHIKGSARSIDGIHIRDMIESVAEQRPDLLSHFGGHAAAAGLTLRK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F F + + + + DG L+ SA++++ +D +E GP+G P P Sbjct: 433 EHFDEFKSVFTQMIAEM-DSDLFQATLWTDGELDDSALHLSSLDWIEQLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F ++ R + HL++ S ++ AIAF F + + Sbjct: 492 FEGR-FQVVDYRWLKEQHLKLKLAV-GSHSIDAIAFHAIDR----FEFNPMLGYVDLV 543 >gi|145589651|ref|YP_001156248.1| single-stranded-DNA-specific exonuclease RecJ [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048057|gb|ABP34684.1| exonuclease RecJ [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 586 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 166/576 (28%), Positives = 261/576 (45%), Gaps = 38/576 (6%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 Q+ + ++AR+ R + L+ +R L+ P L +C A + + E Sbjct: 18 QQSGLHPLLARLYAARGLESPED---LSLELRNLI-SPKELKNCLSTASLLADILEKKEP 73 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIVDGYGPNPSLMEKFINE--G 149 ++I DYD DGA + A+ +R L +P+R GYG P ++E + Sbjct: 74 MLIVADYDCDGATACAVGLRGLRMLGGPDTPIQFLVPNRFTMGYGLTPEVVELAAQQIPK 133 Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209 + +ITVD G S + A G++VIV DHH A A+VNPN+ L Sbjct: 134 PKYLITVDNGIASEAGVDRARELGMEVIVTDHHLPGDRLPKATAIVNPNQPGCSFPSKAL 193 Query: 210 CAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 GV+F +LV + LRQ K + +LLDLVAL TV DV L NR V G Sbjct: 194 AGVGVMFYLLVALRAELRQRGKFTNETQPKVENLLDLVALGTVADVAQLDRNNRVLVSNG 253 Query: 268 LMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325 L R + + +LG+ IGP +NA GR+ + LG RLL++D Sbjct: 254 LKRIRAGISQPGIQALFQAATRDTRKANTFDLGFAIGPRLNAAGRLADMTLGIRLLLTDS 313 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ--CDDIQQASVIVVEGDRWHPGIV 383 + E LA +LD +N+ RR++E M E A A + + Q S I + WH G+V Sbjct: 314 TDEAMALAQELDRINRERRVIEGGMQETALAHLAEDQLAGSMDQRSSICMWHPEWHQGVV 373 Query: 384 GLLAARLKEKFGRPSFAISFEE---DGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 G++A+RLKE+F RP+ + + GSGRS+ G + + E G+++K G Sbjct: 374 GIVASRLKERFNRPAIVFAPAAGATGEELRGSGRSLTGLHLRDALDIVSKREPGLILKFG 433 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGLT+ + +F + FQ A++++ + DG L S + D+L Sbjct: 434 GHAMAAGLTIRKSDFEKFDALFQNVANDLLTDELLERKHIHDGALAPSEFTPEIGDLLAE 493 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-------QDSETLQAIAFRVYGT 551 +G G P PVF ++ ++ HL++ +++ + A+ F Sbjct: 494 -EIWGQGFPQPVFYGE-FEVTQQSLMKEKHLRLMLRPIGASELAANAKPITAVWFNRT-- 549 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 QS + + L + ++G QL + Sbjct: 550 -------QSLPAKAKLAYRLVTDRYQGQAHIQLMIE 578 >gi|255067984|ref|ZP_05319839.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sicca ATCC 29256] gi|255047761|gb|EET43225.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sicca ATCC 29256] Length = 566 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 170/564 (30%), Positives = 263/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R+V + L+ + L+P LT+C+ AARR+ AI EKI+I Sbjct: 22 GADPLIARLCASRDV---QSPAELDDKLAGLLPY-QSLTNCEAAARRLADAIERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E IP +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETIPNCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVPLN---FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ + + +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRDYFSDDLREPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQAL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNDLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVIRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR QL + Sbjct: 543 YRPVANEWRNQMELQLYIDYWEAA 566 >gi|298369234|ref|ZP_06980552.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sp. oral taxon 014 str. F0314] gi|298283237|gb|EFI24724.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria sp. oral taxon 014 str. F0314] Length = 566 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 169/564 (29%), Positives = 262/564 (46%), Gaps = 28/564 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R+V + L+ + L+P LT+C+ AARR+ AI EKI+I Sbjct: 22 GADPLIARLCASRDV---QSPAELDDKLAGLLPY-QSLTNCEAAARRLADAIERKEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAAVDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ + +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 197 VLMALRAELRRRDYFSDELKEPNLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGITCLLARDDAEAQAL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNDLNIERREIEQSMLQDALNAFPETLPSGQTTLV--AYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N F++ +V + F DG L A + + L +G G P Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQTFITDGSLKACDITLEQAQNLAR-HVWGQGFAPPS 493 Query: 511 FAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + H ++ + +D +A+ +R + + Sbjct: 494 F-TDEFHVIRQQPLGAEGKHKKVWLQ-KDGYEFEAMFWRCSED---------IPEYIRTV 542 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 N WR QL + Sbjct: 543 YRPVANEWRNQMELQLYIDYWEAA 566 >gi|254469078|ref|ZP_05082484.1| single-stranded-DNA-specific exonuclease RecJ [beta proteobacterium KB13] gi|207087888|gb|EDZ65171.1| single-stranded-DNA-specific exonuclease RecJ [beta proteobacterium KB13] Length = 563 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 175/568 (30%), Positives = 276/568 (48%), Gaps = 30/568 (5%) Query: 31 LAITQKH---AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87 +I QK IV+++L RN+S D+ I L+ P L +CD+AA + Sbjct: 10 ESIKQKLINTGRHPIVSQILAARNISSSKDVDY---PIEQLL-SPNKLLNCDEAADFLSD 65 Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147 AI +KI I GDYD DGA+ ++ + + + IP R +GYG + +++ Sbjct: 66 AIQKQKKITIVGDYDADGASGSSVAILGFRLLGIEVDFLIPSRFKNGYGLSSEIVDMANT 125 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 + +IITVD G S++ + +A + GIDVIV DHH A ++NPN+ Sbjct: 126 KETDIIITVDNGIASFEGISHANDLGIDVIVTDHHLQAENLPDAKFIINPNQKKCSFPSK 185 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLIGLNRAY 263 +LC AGVVF +L+ I + LR N +LL +LDLVALAT+ D+V + NR Sbjct: 186 NLCGAGVVFYLLIAIRKKLRDQNYFDNLNVDEPNLLQILDLVALATIADMVKMDFNNRLL 245 Query: 264 VVKGLMVAR-RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V GL V R +Q N GLK L N S +L ++I P INA GR+ + +LG L Sbjct: 246 VHHGLRVIRSQQCNLGLKKLFMLTNKSHLTALTSDLSFVIAPKINAAGRMDDMSLGVACL 305 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 + + E A +L N R+ E+ M E+A+A + I + D+WH G Sbjct: 306 TATNENEAHEYARQLIEFNFQRKKTETDMQEEAQAIMRGFN---NNNKTICLFNDKWHQG 362 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGG 439 ++G+LA+RLKE F RP + +E G GS RSIEGF + + ++ +V GG Sbjct: 363 VIGILASRLKENFYRPVIIFAQDESGYLKGSARSIEGFHVRDAIDLVAKKNPEVIVTFGG 422 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGLT+++ F F++ A +I+ + + ++D + +N+ +ID + Sbjct: 423 HAMAAGLTIKKDRFDSFVQSFEEVAESILKPEDLSEIIEVDDSILQDNINVHIIDEINQL 482 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +G G P+F +V+ H ++ + +T ++I F + Sbjct: 483 E-WGNGFQRPLF-TDTFDCVDQKVIKGLHTKLNLTKHN-QTFESIFFN---------YQE 530 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 S R+ L N + + + L + Sbjct: 531 SIPDRVKCLYTLETNKFNNTNKVTLNIK 558 >gi|210632534|ref|ZP_03297444.1| hypothetical protein COLSTE_01346 [Collinsella stercoris DSM 13279] gi|210159481|gb|EEA90452.1| hypothetical protein COLSTE_01346 [Collinsella stercoris DSM 13279] Length = 1127 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 156/577 (27%), Positives = 252/577 (43%), Gaps = 24/577 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RW + + + +VAR++V + S+D + FL PS+ DPL++ Sbjct: 9 RWCLAKNDPSLED--ELAAGLDVAPLVARIMVAHGIKSVDEGRLFLTPSLERDWADPLLI 66 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + A R+ +A+ E I +FGD+DVDG S L+ L +IP R +GY Sbjct: 67 PGMAEVADRVERAVRTGEPIAVFGDFDVDGITSTCLLTEALRTLGARVRPFIPHRFDEGY 126 Query: 136 GPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G +++ I L+ITVD G + D + + +GID++V DHH+ + Sbjct: 127 GLTCQALDRVIEACSPSLVITVDNGIAARDEVGHLIERGIDIVVTDHHEPADLVPVGIPV 186 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +P L GV ++ ++ L N + ++ AL TV D++ Sbjct: 187 TDPKMA-AHGPSRELAGVGVALKLVQVLGERLGNPNLW------RAFTEVAALGTVSDMM 239 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 L NRA V G+ R PG AL + L + + P +NA GR+ + Sbjct: 240 TLTPENRALVADGIAHMRTTTRPGYVALAAVTRTDLATITADALSFSLIPRLNAAGRMAD 299 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L LL++ D+QE LA L+ +NQ RR +E+ + EQAEA VIVV Sbjct: 300 PALALNLLMARDAQEAARLAASLEEINQERRSIEAELTEQAEAIAERT---YDGGRVIVV 356 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G+ G++A+RL ++ P+ S EDG GSGRS+ ++ + V + Sbjct: 357 GGEGWHEGVKGIVASRLVNRYHVPTLLFS-IEDGVARGSGRSVGAVNLFEAVEKC--SDL 413 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHA A G+T N L + +PA ++ + S ++I I Sbjct: 414 LIRFGGHAGAVGVTCAAENLDALRERLGAVLAE-LPAEDFEDRGEVAATVRLSELDIDTI 472 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTP 552 + P+G GN P+ A + VV M F + D ++ AI FRV Sbjct: 473 RQIGMLEPFGQGNKVPLLAACGVTMCDRAVVGKTGDHMRFVATDGASSVPAIMFRVPEVE 532 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + + W+G + +L + D Sbjct: 533 ----ELVNCDTVVDLVFEAVAECWQGRVKPKLMIKDI 565 >gi|269468951|gb|EEZ80532.1| single-stranded DNA-specific exonuclease [uncultured SUP05 cluster bacterium] Length = 565 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 159/572 (27%), Positives = 264/572 (46%), Gaps = 31/572 (5%) Query: 31 LAITQKHA--IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 A+ Q ++ IP + + R V A+ L+ ++ L+ + DKA + QA Sbjct: 8 EALYQSYSDDIPTFLKNIYAARGV----AESQLSLTLAELLKPNFLDL--DKALLLLEQA 61 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLME-KFI 146 + +I+I GD+D DGA + + ++ L + +P+R GYG +P ++E Sbjct: 62 LTKQNRILIIGDFDCDGATASVVAVKSLRMMGAQQVDFLVPNRFEHGYGLSPEIVELAIK 121 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 + LIITVD G +S++ + A GI VI+ DHH A A++NPN Sbjct: 122 EKQPDLIITVDNGISSFEGAELAKKSGISVIITDHHLPSDSVPKADAIINPNLKGCNFPS 181 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRA 262 +L GV F + + L ++N N DL +LDLVAL TV DVV L NR Sbjct: 182 KNLAGVGVCFYLFTSLKSHLHKNNYFTNNNIPLPDLRHVLDLVALGTVADVVKLDQNNRI 241 Query: 263 YVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 + +G+ R + L + + A +LG+ + P +NA GR+ + + G + Sbjct: 242 LISEGIRRIRAKQCAPGILALLEISKRQAETLQASDLGFSVAPRLNAAGRLSDISRGIKC 301 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L++DD + A +L+ NQ R+ ++ + ++A+A V Q + + + WH Sbjct: 302 LLTDDINDARRYAKELEEFNQKRKQEQTRIQDEAQAIVDAQDV-TEGKFALSLFDPSWHE 360 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 GIVG++A +LKE + P + D GS RSI I ++ G+++K G Sbjct: 361 GIVGIVAGKLKEDYHCPVAVFAKSGD-FLKGSIRSIPSVHIKDLLDLVDRQNPGLILKFG 419 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGL+++ +F F + + DG L A +++ ++++ Sbjct: 420 GHAMAAGLSIKAEDFYSFKRVFHDAIKAHLNGEMPKMELLTDGKLEAFDISLNNAEIIKE 479 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFL 557 AGP+G G P+F ++ +VV HL+ + +++ AIAF F Sbjct: 480 AGPWGQGFEEPIFYGE-FEIVEQKVVGEKHLKCRLKLVGNNQVHDAIAF---------FQ 529 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 K+ V L +N WRG+ QL V Sbjct: 530 DPLDTKKATVVYKLSLNIWRGNISLQLMVEQI 561 >gi|317154012|ref|YP_004122060.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio aespoeensis Aspo-2] gi|316944263|gb|ADU63314.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio aespoeensis Aspo-2] Length = 567 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 170/579 (29%), Positives = 288/579 (49%), Gaps = 25/579 (4%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W + + A+ + ++ ++ ++ +L NR ++ + FL+P +R L P + Sbjct: 5 WKARGENAPPSSAV-MAEQLSVSPLIVDILWNRGLTSVEDMDRFLSPGLRHLAK-PSEIP 62 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +AA + + + + I+GDYDVDG + AL+ FL+ ++A ++P+R+ +GYG Sbjct: 63 GLMEAAEVLARGLAEGRTLAIWGDYDVDGITATALIKEFLALRGISAMHHLPNRMEEGYG 122 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N +E+ GAQ+++TVDCG + + A G+ V V DHH A+A+ N Sbjct: 123 MNIPGVEQLAQAGAQMLLTVDCGISDIGPVARARELGMLVAVTDHHLPGDALPDAHAVCN 182 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P + L GV F+++ + R+L + D+ LLDLVAL TV DVV L Sbjct: 183 PRLR-EGGPCDDLAGVGVAFMLVCALNRMLPGE-----QADVRPLLDLVALGTVADVVRL 236 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGES 314 G NR V GL+V + PG+ AL + + + A +G+ + P +NA GR+G+ Sbjct: 237 TGQNRILVKNGLLVIKEAARPGMAALKVVSDYERKAELGAGQIGFNLAPRVNAAGRMGDP 296 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++ E +A +L+ +N RR E + ++A A+ T ++ + +V+ Sbjct: 297 GKALSLLLAKSFDEAMPIAEELNAINMERRRQEQEIADEAFAQAETM----KRMAGLVLH 352 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 D WHPGI+G++A+R+ E++ RP+ + S ++ G GSGRSI FD+ + + + Sbjct: 353 ADHWHPGIIGIVASRVVERYYRPTLMLCSRQDTGLIKGSGRSISEFDLHESLKAV--SPL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH AAGL++ N L + F F + + TP K+D L + + L+ Sbjct: 411 LAGFGGHKQAAGLSLVPENLAALREQFNAFVISQLGPEPLTPTLKLDRQLPFAEITNTLL 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYG 550 + LE P+G GNP PVFA + R+ H+++ Q L A+R+ Sbjct: 471 NELELLQPFGLGNPEPVFASAPVTVAEYRLFGRENEHVKLVLADAQTGARLPGKAWRMGR 530 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 EF ++G+ M ++ +RG LR+ D Sbjct: 531 ----EFPRNTQGQAMRFAFTPKIDRFRGIPSIDLRIRDW 565 >gi|268678688|ref|YP_003303119.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurospirillum deleyianum DSM 6946] gi|268616719|gb|ACZ11084.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurospirillum deleyianum DSM 6946] Length = 527 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 162/555 (29%), Positives = 272/555 (49%), Gaps = 42/555 (7%) Query: 44 ARVLVNRNVSIDYAKDFLNPSIRLL-------MPDPLILTDCDKAARRIVQAIYNSEKIM 96 AR+L S + + L +P P L D KA++RIV A+ E+I Sbjct: 2 ARLL-----SKEEIRRILQSRFENDDCTRLNEIPKPSSLKDIAKASKRIVHAMQKGERIA 56 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I GDYDVDG S ++ +F VN ++ IP+R DGYG NP E AQ+IITV Sbjct: 57 IVGDYDVDGVISSVILSQFFDDLHVNYSLVIPNRFTDGYGLNP---EIVAKLDAQVIITV 113 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G ++ +A Q QGID+I+ DHH V AYA+VNP + D +C A V + Sbjct: 114 DNGISALEAAQICKEQGIDLIITDHHNVPEVLPEAYAIVNPKQEDCCFPHCEICGAQVAW 173 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 ++ + L + +DL S LDL+ +A + D++ L+G+NR V KG++ R Sbjct: 174 YLVAALKEELGIE------YDLSSFLDLLCIAIMADMMELVGMNRVMVKKGIIELNRSKR 227 Query: 277 PGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 P +A+ + + ++++ ++I P IN+ GR+ ++ + S + E L + Sbjct: 228 PAFEAIRQYYG-KATFESDDISFLIAPLINSSGRMEDARFSYEFIKSKNVDEALKLLDYI 286 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 LN+ R+ E + E V + ++IVV G+ WH GIVG++A+RL ++F + Sbjct: 287 VSLNEARKEEERLLFEATLPFVR------EDENIIVVWGEEWHEGIVGIVASRLSKRFKK 340 Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456 P+ S +D K GS R + G +I +++ +E L+ GGH AAG+++E + Sbjct: 341 PAIVFSIRDD-KAKGSARGVGGVNILELIRA--QEKFLIGYGGHKGAAGVSIEVHHLPYF 397 Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516 + A +++ + G ++A ++ L+++LE+ PYG NP P F N Sbjct: 398 KEKL-VEAASVLTQEELEADNDLLGEISADQIDFELLEILENQEPYGQKNPKPSFLLRNI 456 Query: 517 KLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 ++ R++ HL++ + + S L+A+ F +G ++ + L N Sbjct: 457 GVKVDRLIGKEGQHLKLILQ-EGSNALEALFFNYDTK-------VKQGDKVDILFTLSRN 508 Query: 575 YWRGSKRCQLRVLDA 589 +RG QL + Sbjct: 509 DYRGLVTPQLMIKQI 523 >gi|295101009|emb|CBK98554.1| exonuclease RecJ [Faecalibacterium prausnitzii L2-6] Length = 709 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 184/576 (31%), Positives = 295/576 (51%), Gaps = 29/576 (5%) Query: 23 GQEGINRALAITQ-KHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDK 80 +E LA Q + + +A +L R ++ A L + DP++LTD DK Sbjct: 41 SEEKYRSVLAAQQKEAGL---LAGILAARGITDPAEALTLLAG--EEELSDPMLLTDMDK 95 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 A RI++AI E I++FGDYDVDG + AL+ + L +P R DGYG + + Sbjct: 96 ACERILRAIDEGEMIVVFGDYDVDGVTATALLYQHLKGMGAAVKCMLPSREGDGYGLSKN 155 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ ++G +LI+TVD G ++ + +A + GID+I+ DHH A A+V+P R Sbjct: 156 AIQSIYDKGCRLIVTVDNGISAVEEAAFAASLGIDLIITDHHLPHDTLPQAAAIVDPRRA 215 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 DD S LC AGV F + + + P L DL A+ TV DV+PL G N Sbjct: 216 DDHSPFKGLCGAGVAFKLCAAL-------DGCPPEEMLEYCGDLAAVGTVADVMPLTGEN 268 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 R V GL + PG AL+E V P+TAEN+ Y I P INA GR+ + + Sbjct: 269 RTIVKAGLRQLQNTDRPGFCALLEEVGLAGKPVTAENISYAIAPRINAAGRMDSAVTALQ 328 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 L++ +D LA KL +N R+ E +++ A+ + + + ++ VI++ G WH Sbjct: 329 LVLCEDEDRAVELAHKLSDINIQRQETEMEIVKAAQELLDAEPERLEDR-VILLWGRDWH 387 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 PG++G++A+RL EK GRP +S +E G+G GSGRS++GF++ + ++ IL++ GG Sbjct: 388 PGVIGIVASRLVEKTGRPVIVVSVDEHGEGKGSGRSVQGFNLHECIASC--ADILLRFGG 445 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGL+V + L +A P ++ TP + D ++ + + + L+ Sbjct: 446 HAMAAGLSVREEDLQTLRQRLNDWAARECP-VLRTPPLECDLSVHLDRLTVESVRRLDQL 504 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 PYGA NP+PVF ++ + V+ H ++ +S ++ A+ F + E + Sbjct: 505 APYGADNPSPVFVLEMAVVEGVYAVSEGKHCRLRLRQGNS-SIYAVWFGM----HPEQVP 559 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQL--RVLDASPV 592 S G + L V + + QL R+++ P Sbjct: 560 YSTGDVVDAAISLSV--YDSPRGAQLSGRIIELHPA 593 >gi|269837412|ref|YP_003319640.1| single-stranded-DNA-specific exonuclease RecJ [Sphaerobacter thermophilus DSM 20745] gi|269786675|gb|ACZ38818.1| single-stranded-DNA-specific exonuclease RecJ [Sphaerobacter thermophilus DSM 20745] Length = 598 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 178/587 (30%), Positives = 274/587 (46%), Gaps = 33/587 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 ++W+ + A + + ++ +L R FL P + L PDP Sbjct: 39 YQWIEPAP---ADWAHTLCEDF----LLGEILWRRGFRDRAAVDAFLRPRLDDL-PDPHA 90 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D A I I I+++GDYD DG AL+ R L+ +P+R+ DG Sbjct: 91 LPDLTAAVSLIRDTIAAGRPIVVYGDYDADGLCGTALLTRALTALGAEVRTMVPNRLTDG 150 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + +GA L I VDCG+ +AL+ GI +V+DHH V+ +PA A Sbjct: 151 YGLNLNAARRIAADGAGLAILVDCGTGDAEALRLLQAAGIPAVVLDHHHVRDPNLPAAAF 210 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P R D L AAGV + + + R +PL ATV DVV Sbjct: 211 VSPRRPDSQYPFAGLAAAGVTYQLARALLGEERAAGLLPLAAL----------ATVADVV 260 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 PL NRA V GL GL+ L + +TA +L +++ P +N+ GR+ + Sbjct: 261 PLERDNRAIVHHGLRRFAADAPLGLQVLCVDAGVDARSLTAWHLAFILAPRVNSAGRMED 320 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L RLL+++D E LA L LN R+ ML QAE ++ DD ASV++V Sbjct: 321 PTLALRLLLTEDPAEARRLARYLSRLNAQRQQATERMLAQAERRLALGTDD--NASVLLV 378 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + W G+VGL+A+RL +++ RP+ ++ + + GS RSI+GFDI + + + Sbjct: 379 AEEGWSVGLVGLVASRLADRYQRPAVVLARDGE-LSRGSARSIDGFDIVEALDAC--RDL 435 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 LV GGH+ AAGLTVE + L + P + P ++D L+A+ + Sbjct: 436 LVAHGGHSRAAGLTVETAHLRTLEERLSSLIGRTFPDGLPLPALQLDAELHANELVPETA 495 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQ---AIAFRVY 549 ++E+ P G GNP PVF + +Q R+ + HL ++D ++ A++F Sbjct: 496 RLIEALEPCGTGNPTPVFFIRDVSVQRPRLSRDGKHLLFDVVARDHRIVRRVGAVSFNGS 555 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 + +R V L ++W GS+R L V+D P H Sbjct: 556 ER----LDELAALRRADVAFTLRRDHWNGSERLSLEVVDFRPATARH 598 >gi|297568779|ref|YP_003690123.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurivibrio alkaliphilus AHT2] gi|296924694|gb|ADH85504.1| single-stranded-DNA-specific exonuclease RecJ [Desulfurivibrio alkaliphilus AHT2] Length = 592 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 174/601 (28%), Positives = 273/601 (45%), Gaps = 32/601 (5%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLM 69 S G R GQ ++ ++ +P+ + VL+ R + FL P++ L Sbjct: 4 QSAGGER-KGERGQVDLSCCKSLALDLGLPEALVAVLLRRGHRDRAGIESFLRPNLADL- 61 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIP 128 PDP ++ +A I ++ + + I+++ DYDVDG ++ A++ +FL + + + +P Sbjct: 62 PDPDLMLGMSRAVELIANSMGSRQPIVVYADYDVDGLSAGAVLYKFLENLNCRDLYYLLP 121 Query: 129 DRIVDGYGPNPSLMEKFIN----EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 R DGYG + L+ + L+ITVDCG + AL A G VIV DHH+ Sbjct: 122 HRGEDGYGVHAHLLAELRAKLGGNARPLLITVDCGIGDHQALIEARELGYTVIVTDHHRP 181 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF--DLLSLL 242 + PA A++NP++ +L GV F +++ + R L +L + Sbjct: 182 EDTLPPAAAILNPHQAGCPFPCKNLAGVGVAFYLMMGLRRHLAGQGFFADQPPVNLKEYM 241 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP---------IT 293 DLVAL TV D+V L G NR V GL V + PGL AL I P I Sbjct: 242 DLVALGTVADMVALRGANRILVRAGLEVMQESRRPGLVALAVAAGIKPPKGEGSEKRAIY 301 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 E++ + + P +NA GR+ RLLI+D+ E + LA +L+ LN+ RR + + Q Sbjct: 302 PEDISFSLAPRLNAAGRVATPETAFRLLITDNPAEAQALAAELEELNRWRRQLSDQVYRQ 361 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 A+ + + Q+ V+V+ + WH G++G+ A RL++ F RP +E GSG Sbjct: 362 AKERAAA--SEQQKMQVLVLADENWHTGVLGIAATRLQQDFNRPVILFGYESPNILRGSG 419 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RS EG D+ MV E +L+ GGHA A G+T++ + A I+ Sbjct: 420 RSFEGLDLLAMVDACSE--LLLGYGGHAAALGVTLDPGRLAEFQAQLNEAAGRIMAERQP 477 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531 P +D ++ L P+G GNP P+F L VV HL+ Sbjct: 478 EPTITVDWHFADGRIDAGLTTNYHLLEPFGPGNPEPLFQVKG-PLAQAGVVGREQNHLRF 536 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 ++ +D L IAF G L S + + L N ++G QL+ P Sbjct: 537 RWQQKD-FNLPGIAFN-----YGNSLKPSNPGPVELIFALRRNIYQGRVAWQLQAKSIKP 590 Query: 592 V 592 Sbjct: 591 T 591 >gi|227872828|ref|ZP_03991140.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sinus F0268] gi|227841323|gb|EEJ51641.1| single-stranded-DNA-specific exonuclease RecJ [Oribacterium sinus F0268] Length = 571 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 159/584 (27%), Positives = 280/584 (47%), Gaps = 35/584 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLI 74 +W + + +K ++ ++ R+L NR+++ + ++FL +P PL Sbjct: 2 KKWFVYGKKADFQ---ELGEKLSLDPVLVRILRNRDLTTEEEMRNFLEG---EEIPSPLF 55 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIV 132 L D + R+ +A+ EK+ I GDYDVDG + ++ + LS ++ IP RI+ Sbjct: 56 LPDSIRFLNRLERAMKEGEKVRIVGDYDVDGVCASTILAKALSLFFSKEQLSVVIPHRIL 115 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ------VKS 186 DGYG N ++E+ EG L+IT D G +++ A++ A + G+DV++ DHH K Sbjct: 116 DGYGINEQIIEEAKAEGISLLITCDNGISAFSAMEKAKSYGMDVLLTDHHDLRRDEDGKK 175 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A+A+VNP R +C A V +L++ ++ ++ L L Sbjct: 176 RIPEAFAVVNPKREGSKYPNEEICGAMVCYLLMKMLLEKRQK-----GLELLEELACFAG 230 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPS 304 +ATVCDV+PL NR V L ++ N G++AL+++ + I++ LG+ IGP Sbjct: 231 IATVCDVMPLQKENRVIVKYCLTHLQKTQNIGMQALLKQCHILPEQEISSYTLGFQIGPC 290 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INAGGR+ + L L + +D + E A L VLN+ R+ M +++A+A + Sbjct: 291 INAGGRLESAMLALSLFLEEDEGKAEEKAAHLLVLNEERKEMTKKGVDEAKALAEQEG-- 348 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 ++ + H + G++A R++E + RP F ++ EDG SGRSI G+ + Sbjct: 349 --DVPLLFLVLPDLHESLAGIVAGRIREAYYRPCFILTNGEDGSCKASGRSIPGYPM--A 404 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 ++ +L++ GGH MAAG +V + N L + A + A ID VL Sbjct: 405 ERLEEQKELLLRFGGHPMAAGFSVTKENVPGLKKALLQNAR--LQAEDLEEKVWIDVVLP 462 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQ 542 S + + L P+G GN P FA N L+ ++V +++ E + ++ Sbjct: 463 FSYLKEDFVRSLSRLEPFGRGNEKPAFAQKNVLLKDFKIVGKNKNAIKLYLEDEQGTRVE 522 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 + F L + +S + ++ + + + K+ Q+ V Sbjct: 523 GVLFEDGEKFLNK---KSSRNKFNLLYYPKIQVYNNIKQLQVVV 563 >gi|166711941|ref|ZP_02243148.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv. oryzicola BLS256] Length = 579 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 174/566 (30%), Positives = 275/566 (48%), Gaps = 24/566 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + + AA + AI ++I++ GD Sbjct: 24 PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSEVAAALLADAIAQQQRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + ++LR DL LLDLVA+ TV D+VPL NRA V GL R +G Sbjct: 200 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+ +D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ GGHAMAAGL++ Sbjct: 380 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQTFGGHAMAAGLSIH 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 R FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F + ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDG-HFEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPVEG 594 L + +RG QL V P G Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPAAG 577 >gi|50086458|ref|YP_047968.1| ssDNA exonuclease, 5'--> 3' specific, Mg dependent [Acinetobacter sp. ADP1] gi|49532434|emb|CAG70146.1| ssDNA exonuclease, 5'--> 3' specific , Mg dependent [Acinetobacter sp. ADP1] Length = 568 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 175/559 (31%), Positives = 268/559 (47%), Gaps = 20/559 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P+ +A +L R V D ++L L D A I QAI ++I+I Sbjct: 20 DVPEFIAHILARRGVDSIQQLD-----LKLKYLLKPTLKGLDTAIALIDQAIDQQQQIII 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-KFINEGAQLIITV 156 GDYD DGA S ALM L + +PDR GYG P++ + +L+ITV Sbjct: 75 VGDYDADGATSTALMCLALKEMGARVDYIVPDRFKYGYGLTPAIADLAHQQCQPELLITV 134 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S+ ++ A G+ VI+ DHH A A+VNPN+L+ L GV F Sbjct: 135 DNGISSHAGVEQAQQLGMKVIITDHHLTTKSAPDAEAVVNPNQLNCPFPSKALAGVGVAF 194 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQG 275 +L + LRQ + P + LDLVAL T DV L NR V GL ++Q Sbjct: 195 YLLAHLSS-LRQAHHKPSCK-ITQYLDLVALGTYADVASLDYNNRILVDAGLKRIQQQQC 252 Query: 276 NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G+ AL++ + A++LG+++GP INA GR+ N+G L++ D + +A Sbjct: 253 RAGILALLDIAKRDPSTLKAQDLGFVLGPRINAAGRMDSMNIGIECLLASDLETAYPIAE 312 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L+ LN RR +E+ M +QA + Q +V+ + WH G++G++A RLKE+ Sbjct: 313 QLNRLNLERRQVETEMKQQALGYLEDIQLQHENIPPALVMFAENWHQGVIGIVAGRLKEQ 372 Query: 394 FGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 F RPS + + DG+ GS RSIEG I + ++ GGHA AAGLT+++ Sbjct: 373 FHRPSIVFAPDTDGEHIKGSARSIEGIHIRDTIEQVAEQHPHLVSHFGGHAAAAGLTLKK 432 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F + F + + V DG L A A+++ +D +E GP+G P P Sbjct: 433 SHFEEFKNVFTACIA-QMDETLLQAVLWTDGSLPAQAIDLETVDWIERLGPWGQKFPLPQ 491 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F ++ R + HL++ + ++ AIAF +F K +++ Sbjct: 492 FEGR-FEVLDYRWLKDIHLKLKLGLGEYGSVDAIAFNAAQ----KFDFDPMKKHVNLVYE 546 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L N + GS QLR+L Sbjct: 547 LDRNEFNGSVNLQLRILHL 565 >gi|312143975|ref|YP_003995421.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp. 'sapolanicus'] gi|311904626|gb|ADQ15067.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp. 'sapolanicus'] Length = 805 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 170/585 (29%), Positives = 281/585 (48%), Gaps = 35/585 (5%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 W ++ I ++ +L R + +L+ ++ L DP Sbjct: 2 NKFWQIKSYRDNIEGEK----------LIDDLLEERGFDNLKDKRKYLSSDLKYL-SDPF 50 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIV 132 +L +KA + I +++ + KI+I+GDYDVDG S AL+ ++ + + +IPDRI Sbjct: 51 LLPGMNKAVKLINESLNSKGKILIYGDYDVDGITSTALLYQYFKKRFKIEVDYFIPDRIE 110 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + + + G LIITVDCG T++ ++ G+ VI+ DHH + A Sbjct: 111 NGYGLSKKAVHEIKARGIDLIITVDCGITAFKEVELIKELGMKVIITDHHTPAEKLPDAA 170 Query: 193 ALVNPNRLDD-LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 ++N + L + + G F ++ L +D L L +VAL TV Sbjct: 171 TVINHHLLKEKNHVLSEIAGVGTAFKLVQA----LEKDKSFDLENLAQDFLPIVALGTVA 226 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 DV PL G NR V GL + + N GLK LI ++N+ IT+ +GY+I P INA GR Sbjct: 227 DVAPLKGENRIIVKHGLGLINKGKNLGLKILINKLNLDSQKITSGQMGYIIAPPINAAGR 286 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +N LLI+D +++ E +A L +N R+ E + +QA K+ +I++ Sbjct: 287 IYNANKALELLITDKAKKAEKIADTLIKINSERQREEELIYKQALEKI--DNLNIEEEKS 344 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAV 429 I++ RWH GI+G++A++L EK+ P ++ +E+ + S RSI +I + + Sbjct: 345 IILADSRWHSGIIGIVASKLVEKYNLPVILMALDENDEFAKASARSIAKLNIYQALKS-- 402 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 E L+ GGH AAG +++ D F K+ + + KID L+ +N Sbjct: 403 TENYLLNFGGHKAAAGFSIKIDKIADFKDAFVKYLKQNLTDEDYFKIKKIDVNLDIDKLN 462 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFR 547 L++ LE+ P+G NP P F F N K +S + HL++ L A+ F Sbjct: 463 KTLVNKLEAFSPFGVANPRPKFLFKNIKSESYYKMGKKNNHLKINL----GSNLSAVGFN 518 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + G+F + K++ V +NYW+G + QL++ D Sbjct: 519 M-----GDFFSELEAKKIDVIAQPEINYWKGRENIQLKISDLRKA 558 >gi|291531043|emb|CBK96628.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium siraeum 70/3] Length = 672 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 168/578 (29%), Positives = 276/578 (47%), Gaps = 27/578 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W+ A+ + +P ++ +LV R + + + A+ + N + + DPL+ Sbjct: 2 KKWLVRNTDN--ALAMKLKTDTGLPMLLCSLLVGRGIYTAEQAQQYFNGT---ELSDPLL 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D DKA + I A+ N KI ++GDYD DG S ++ L + N YIP R +G Sbjct: 57 IADMDKAVQAIEAAVDNEIKITVYGDYDCDGVTSTVMLFTHLDAIGADVNWYIPTR-EEG 115 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + K +G LIITVD G ++ + + G+ ++V DHHQ+ A A+ Sbjct: 116 YGLNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAI 175 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP+R DD S L GV +++ + R + L DL A+ T+ DVV Sbjct: 176 VNPHRQDDNSPYKELAGCGVALKLIMALER--------DVEGVLEQYADLAAIGTIGDVV 227 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGE 313 L G NR V +GL+ + N GL+ALI + IT+ + + + P INA GR Sbjct: 228 ALTGENRIIVKRGLLEMQYSENQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDS 287 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LL++ Q E+ A +L+ LN R+ +ES +LE A+A+++ + V++V Sbjct: 288 PKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQLIADPKAF-NSRVLIV 346 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ W+ GI+G+++ARL E + +P I E + GS RSIEGF + + E Sbjct: 347 CGEGWNHGIIGIVSARLLELYEKPCIVIG-IEGDEARGSARSIEGFSLYTALDACSEH-- 403 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAG ++ + + +A P+ + + D S + I+ I Sbjct: 404 LTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKFPS-MPVMTTEADIEPELSDLEISSI 462 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTP 552 + L PYG N P+F N + S R + + T E + S+ + + F Sbjct: 463 ENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKYTSFTAEYKGSQ-FKFLCFGTSFDK 521 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + G ++ V H+ +N + K +RV D Sbjct: 522 FGYY----PGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555 >gi|78357757|ref|YP_389206.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220162|gb|ABB39511.1| exonuclease RecJ [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 568 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 277/580 (47%), Gaps = 21/580 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W+ + ++ + +++ ++L R + + + +L+P +R L P P Sbjct: 3 KNWIPRGTEPLPGETALWAERLGVSELLVQLLWTRGLHTPEDMDVYLSPGLRHLAP-PDC 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 +AA + + ++GDYDVDG SVAL+ FL+ + A +IP+R +G Sbjct: 62 WPGLAQAAAVLDDGLAQGLPFAVWGDYDVDGVTSVALVKSFLAAHGIAARHHIPNRFEEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +E+ EG +L++TVDCG + ++++ A G+ V+V DHH A+A+ Sbjct: 122 YGMNVAWVERLAQEGVRLLLTVDCGISDHESVARARELGMTVVVSDHHLPGESLPQAHAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 NP D L GV F ++ + L Q V D+ LLDLVAL T+ DVV Sbjct: 182 CNPRLADC--PCPALAGVGVAFFLMAALNSRLAQRTGVKA--DIRPLLDLVALGTIADVV 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIG 312 L G NR V GL+V G PG+ AL E S + A + + + P INA GR+G Sbjct: 238 DLSGQNRILVKNGLLVMTEAGRPGIAALKEVSGYSVSASLGAGQVAFGLAPRINAAGRLG 297 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 E++ LL++ D LA +LD +NQ R+ E +LE+A + Q Q +V Sbjct: 298 EADTALSLLLAPDYAAAAPLAARLDAMNQERKEEEERILEEAREQAAAQ----QDRMGLV 353 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + WH G++G++A+R+ E+F RP+ + +E G GSGRS F + + ++ Sbjct: 354 LYAPHWHAGVIGIVASRIVEEFYRPTLIL-CDEGGVVKGSGRSTAEFHLHEGLTRC--AD 410 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NIA 491 +L+ GGH AAG++++ L + F T K+D L + + A Sbjct: 411 LLLGFGGHRQAAGMSLDHAGVDALRERFHAVVVESCGPHPLTASLKVDAELGFARASDFA 470 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYG 550 ++ LE P+G GN P F+ P +++ R H+Q+ TL+A A+R Sbjct: 471 MLKELELLQPFGMGNAEPTFSSPVLEVRGNRRFGKNHMQLELLDPSCGVTLRAKAWRQAD 530 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 RG++M + ++ + G LR+ D Sbjct: 531 N----LPRDMRGRKMRLAYTPRIDRYNGLASVDLRIKDWE 566 >gi|295676931|ref|YP_003605455.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. CCGE1002] gi|295436774|gb|ADG15944.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. CCGE1002] Length = 568 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 185/584 (31%), Positives = 270/584 (46%), Gaps = 35/584 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 V+ L + + ++AR+ +R V + + + L+P P L Sbjct: 5 VTRPCSPVDAEVLT---RCGMHPVLARLYASRGVCLPEEVET----GLARLVP-PADLKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 CD AA + A+ ++++ DYD DGA + A+ +R L + +P+R+ GYG Sbjct: 57 CDAAAALLADALQQQRRMLVVADYDCDGATACAVAVRGLRMFGARIDYLVPNRMEHGYGL 116 Query: 138 NPSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 P ++E + L+ITVD G S D + A GIDV+V DHH E A A+ Sbjct: 117 TPDIVELAARSAAGKPDLLITVDNGIASVDGVAAANTLGIDVLVTDHHLPGDELPAARAI 176 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVC 251 VNPN+ L GV+F VL+ + LR+ L LLDLVAL TV Sbjct: 177 VNPNQPGCTFPSKCLAGVGVMFYVLLALRAELRRRGAFGDALPEPRLDGLLDLVALGTVA 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGG 309 DVV L G NR V +GL R+ A + R A +LG+ +GP +NA G Sbjct: 237 DVVKLDGNNRVLVAQGLQRIRKGRMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAG 296 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + +LG L +DD LA +LD +N+ RR +E+ M +QA + T D A+ Sbjct: 297 RLSDMSLGIECLTTDDVGRAWELAQQLDTMNRERREIEAGMQQQALDDLST--VDPDGAT 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF 427 I + WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 355 TITLFNPGWHQGVIGIVAGRLKEKFHRPSFTFAPADDTGVLVKGSGRSIPGFHLRDALDL 414 Query: 428 A--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 E ++VK GGHAMAAGLT+ + R F+ + A + DG L Sbjct: 415 ISKREPDLIVKFGGHAMAAGLTLAAADVPRFTAAFEAVGREWLSAEALARTVETDGELED 474 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 + ++ML+ A +G G P PVF+ ++ S +V HL++ + + AI Sbjct: 475 AYFTPQFVEMLD-AAVWGQGFPAPVFSGE-FEVASQALVKDKHLKLQL-LRGRQRFNAIW 531 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F T R V L + W G R QL V A Sbjct: 532 FNHTDT---------LPARTTVAYRLASDTWNGVSRVQLIVEHA 566 >gi|262039442|ref|ZP_06012746.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia goodfellowii F0264] gi|261746509|gb|EEY34044.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia goodfellowii F0264] Length = 894 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 160/592 (27%), Positives = 277/592 (46%), Gaps = 34/592 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +WV + + + + + ++L +R + S K+FLNP + + P L Sbjct: 5 KWVIKSVPKDKDIKIN---DIPVDKDILKILSSRGIKSAKDIKNFLNPKLENIQ-SPYGL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDG 134 D +K A I +A+ + I I+GDYDVDG S +++ L N N YIP R +G Sbjct: 61 YDMEKTAEEIEKAVNKQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPVR-DEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYA 193 YG N ++K + G +L+ITVDCG T++ ++YA G+ VI+ DHH ++ A A Sbjct: 120 YGLNNDALKKIKDSGGELVITVDCGITAFTEVEYANFLGLSVIITDHHNLHGNKIPKALA 179 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NP R ++ L G +F V++ ++ K LDLVA+ TV D+ Sbjct: 180 VINPKRSENSFSFNALAGVGTIFTVILALFERKGIKEKA------YKYLDLVAIGTVADI 233 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKAL---------IERVNISSPITAENLGYMIGPS 304 VPL+ NR + GL N GL L N + ++G++I P Sbjct: 234 VPLLEENRIFTKFGLEKLPFSENKGLSFLLYKLFNNEANSANNPKVEYSTYDVGFIIAPV 293 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 NA GR+ ++ + +LLISD+ +E+E++ +L N R+ +++ ++E E + Q Sbjct: 294 FNAAGRLKDAKMVVKLLISDNDREIEIIVKELINKNYERKELQNNIVEMVEKNIEKQ--H 351 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGK 423 I + VI+ +H G++G+ AA++ + + +P + +ED G +GS RSIE F+I Sbjct: 352 INEDFVIIDYSPEYHHGVIGIAAAKIVDTYYKPVIIMEVKEDEGIAVGSCRSIENFNI-- 409 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + + + VK GGH+ AAG T+ N +A I+ V ID + Sbjct: 410 LEALQSMPELFVKFGGHSGAAGFTIPIKNIELFRKKINDYAKKILKEEDFVKVINIDKQI 469 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541 ++ ++E P+G GNP+P F N L++I+ + HL + + + Sbjct: 470 PIQKISYEFFQVIELLKPFGFGNPSPTFQTKNILLENIKFIGESKNHLMFDLKQKGFSSR 529 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 A+ F F S+ + + V ++ ++ + D + Sbjct: 530 NAVWFGAGEY----FKELSQNLVYDIVYKMKVESFQDRYYTKVYIDDIKVSD 577 >gi|312796705|ref|YP_004029627.1| Single-stranded-DNA-specific exonuclease recJ [Burkholderia rhizoxinica HKI 454] gi|312168480|emb|CBW75483.1| Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454] Length = 577 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 176/576 (30%), Positives = 275/576 (47%), Gaps = 32/576 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A A+ Q H I ++AR+ +R + + + ++ L+P P+ L+ AA + Sbjct: 21 PADAHALAQ-HGIHPVLARLYASRGIGTPAEVET----ALARLLP-PVQLSGASAAAALL 74 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME-- 143 AI +I++ DYD DGA + A+ +R L + + +P+R GYG P ++E Sbjct: 75 ADAIAARRQILVVADYDCDGATACAVAVRGLRLFGAHVDYLVPNRFEYGYGLTPEIVELA 134 Query: 144 -KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + L+ITVD G S D + A GIDV++ DHH A A+VNPN+ Sbjct: 135 ARRPGARPDLLITVDNGIASVDGVAAANALGIDVLITDHHLPGDTLPAARAIVNPNQPGC 194 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLN 260 HL GV+F VL+ + +LR+ L LLDLVAL TV DVV L N Sbjct: 195 AFPSKHLAGVGVMFYVLLALRALLRERGAFDGRPEPRLDGLLDLVALGTVADVVRLDANN 254 Query: 261 RAYVVKGLMVARRQGNPGL--KALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGS 318 R V +GL R + +A +LG+ +GP +NA GR+ + +LG Sbjct: 255 RVLVAQGLQRIRTGKMQPGVAALFRAAARDARNASAFDLGFALGPRLNAAGRLSDMSLGI 314 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 L++DD+Q + LA +LD +N+ RR +E+ M EQA A++ D + A+ I + W Sbjct: 315 ECLVTDDAQRADALAQQLDAMNRERREIEAGMQEQALAELAQL--DPRDAATITLFNPAW 372 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGIL 434 H G++G++A RLKE+F RP+ + ++ GSGRSI GF + + E G++ Sbjct: 373 HQGVIGIVAGRLKERFHRPAITFAPADESGERVKGSGRSIPGFHLRDALDLISKREPGLI 432 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGHAMAAGLT+ + R F+ A + + DG L + + ++ Sbjct: 433 ERFGGHAMAAGLTLRTSDVPRFTAAFEALAREWLNEDALARQIETDGELEDAYHTPSFVE 492 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 ++++ +G G P PVF+ + S +V HL++ ++ AI F T Sbjct: 493 LIDN-AVWGQGFPAPVFSGE-FDVLSQSLVKERHLKLQL-ARGRLRFAAIWFNHIDTLPA 549 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 L L + W G R QL V A+ Sbjct: 550 RAL---------FAYRLVRDTWNGVSRVQLVVEHAA 576 >gi|237739731|ref|ZP_04570212.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 2_1_31] gi|229423339|gb|EEO38386.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 2_1_31] Length = 852 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 170/581 (29%), Positives = 288/581 (49%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W L + R + + ++ ++ NRN+S+D DF +P L Sbjct: 6 KW-LLENKINYERIFKNKGEKKLDFVIESLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI N+EKI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DIDIAVKRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ E A L+I+VDCG S + + +A G+D I+ DHH++ + A+A++N Sbjct: 114 LNKDAIQSLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y L + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSYKYLAGVGTAFMLVYALYSKLDRLN------DLEKFLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 NR +V +GL + G+K L+ +V + ++GY+I P NA GR+ Sbjct: 228 TSDNRKFVKRGLKLLNNTKWIGIKQLLRKVFPEDWDTREYCSYDVGYLIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I +D E + +L N R+ ++ +LE + A++ + + ++I+ Sbjct: 288 DAKQAVSLFIEEDGFECLTIIEQLLENNNERKNIQKKILEASIAEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +PS + +E +G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGINI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N K+ P + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFPKELFVKTIKIENILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + + I F Sbjct: 464 FLRELEILEPYGAKNHTPIFAFKNCEYENLRFTKNSTEHLMLDIKKDNYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + K++ V L + ++ C+L++ D Sbjct: 524 DY----YDIIANSKKIDVAFKLKLETFKDRYMCKLQLEDVK 560 >gi|188575987|ref|YP_001912916.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520439|gb|ACD58384.1| single-stranded-DNA-specific exonuclease RecJ [Xanthomonas oryzae pv. oryzae PXO99A] Length = 558 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 174/564 (30%), Positives = 272/564 (48%), Gaps = 24/564 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + D AA + AI +I++ GD Sbjct: 3 PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSDVAAALLADAIAQQRRILVVGD 58 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 59 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 118 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 119 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 178 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + ++LR DL LLDLVA+ TV D+VPL NRA V GL R +G Sbjct: 179 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 238 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+ +D + +A Sbjct: 239 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 298 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 299 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 358 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ GGHAMAAGL++ Sbjct: 359 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQTFGGHAMAAGLSIH 418 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 R FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 419 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 478 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 479 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 530 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V P Sbjct: 531 YRLVADDYRGGTAVQLIVEHCEPA 554 >gi|84624393|ref|YP_451765.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368333|dbj|BAE69491.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 579 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 174/564 (30%), Positives = 272/564 (48%), Gaps = 24/564 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + D AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSDVAAALLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + ++LR DL LLDLVA+ TV D+VPL NRA V GL R +G Sbjct: 200 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+ +D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ A G++ GGHAMAAGL++ Sbjct: 380 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDARHPGLIQTFGGHAMAAGLSIH 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 R FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V P Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPA 575 >gi|209519984|ref|ZP_03268763.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. H160] gi|209499581|gb|EDZ99657.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. H160] Length = 568 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 184/584 (31%), Positives = 270/584 (46%), Gaps = 35/584 (5%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTD 77 V+ L + + ++AR+ +R V + + + L+P P L Sbjct: 5 VTRPCSPVDTEVLT---RCGMHPVLARLYASRGVCLPEDVET----GLARLVP-PAELKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 CD AA + A+ ++++ DYD DGA + A+ +R L V + +P+R+ GYG Sbjct: 57 CDAAAALLADALQQQRRMLVVADYDCDGATACAVAVRGLRMFGVRIDYLVPNRMEHGYGL 116 Query: 138 NPSLME---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 P +++ + L+ITVD G S D + A GIDV+V DHH E A A+ Sbjct: 117 TPDIVDLAARSAAGKPDLLITVDNGIASVDGVAAANALGIDVLVTDHHLPGDELPAARAI 176 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVC 251 VNPN+ L GV+F VL+ + LR+ L LLDLVAL TV Sbjct: 177 VNPNQPGCTFPSKCLAGVGVMFYVLLALRAELRRRGAFGDALPEPRLDGLLDLVALGTVA 236 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGG 309 DVV L G NR V +GL RR A + R A +LG+ +GP +NA G Sbjct: 237 DVVKLDGNNRVLVAQGLQRIRRGRMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAG 296 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ + +LG L +DD LA +LD +N+ RR +E+ M +QA + T D A+ Sbjct: 297 RLSDMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALDDLST--VDPDGAT 354 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF 427 I + WH G++G++A RLKEKF RPSF + +D GSGRSI GF + + Sbjct: 355 TITLFNPGWHQGVIGIVAGRLKEKFHRPSFTFAPADDSGVLVKGSGRSIAGFHLRDALDL 414 Query: 428 A--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 E ++VK GGHAMAAGLT+ + R F+ + + DG L Sbjct: 415 ISKREPDLIVKFGGHAMAAGLTIAAADVPRFTAAFEAVGREWLSEEALARTVETDGELED 474 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 + ++ML+ A +G G P PVF+ ++ S +V HL++ + + AI Sbjct: 475 AYFTPQFVEMLD-AAVWGQGFPAPVFSGE-FEVASQALVKDKHLKLQL-LRGRQRFNAIW 531 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F T R + L + W G R QL V A Sbjct: 532 FNHTDT---------LPARTTIAYRLTSDTWNGVSRVQLIVEHA 566 >gi|125972732|ref|YP_001036642.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum ATCC 27405] gi|281416918|ref|ZP_06247938.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum JW20] gi|125712957|gb|ABN51449.1| putative exonuclease, RecJ-like protein [Clostridium thermocellum ATCC 27405] gi|281408320|gb|EFB38578.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium thermocellum JW20] Length = 763 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 159/554 (28%), Positives = 265/554 (47%), Gaps = 25/554 (4%) Query: 40 PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++VAR+ NR + + + LNP + + P D +A RI++A N EKI ++ Sbjct: 25 DELVARIFYNRGYKNPETIRQMLNPELY-VPTKPDEFPDMPRAVDRILRAADNEEKICVY 83 Query: 99 GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 GDYDVDG S ++ L+ + ++PDR +GYG N ++ K +G LIIT DC Sbjct: 84 GDYDVDGVTSTVTLVECLNFFTSKVVYHVPDRFTEGYGMNEEIVRKLAQDGVSLIITCDC 143 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G ++ + A G+DV++ DHH V E PA A++NP L++ ++ G+V+ + Sbjct: 144 GISNVREITLAKELGMDVVLTDHHTVPDELPPADAILNPKLLEEGHRARNISGCGMVYFL 203 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278 + + LD++AL+ + DVV L G NR + K L G Sbjct: 204 CLALLEKKG------FPDRAERFLDMLALSLIADVVSLNGENRYLLQKALPALFNTRRIG 257 Query: 279 LKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 L+ L+E + + E++ + I P INA GR+ + L L + D ++ ++A K+D Sbjct: 258 LRQLLEVAERNGKLENEEDVAFQIAPRINAAGRMDTARLPVELFLCQDLEKARIMAEKID 317 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 LN R+ ++ +++++A V T+ + +++V+ + WH GI+G+ A R+ E + +P Sbjct: 318 SLNTERKRVQQSIVDEAVEMVETRK---KNKTILVLYKEYWHHGIIGIAAGRICELYRKP 374 Query: 398 SFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456 + S +EDG +GS RSIE +I +++ G L+K GGH+ AAGL++ + + Sbjct: 375 AILFSLKEDGITAVGSARSIEEVNIYELIKEC--SGKLLKFGGHSQAAGLSIRKDDIEEF 432 Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516 + A N D L +N L D ++SAGPYG G P F N Sbjct: 433 ISQIEMEAENRYFIKDMVN-VNADMELGIEDINEELYDRIQSAGPYGEGFEAPCFCIRNV 491 Query: 517 KLQSIRVVNLAHLQMTFESQDSETLQAI-AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 + S R+ H M E Q + A+ F + G+ VT + N Sbjct: 492 IVLSDRMTEKKHHIMVLEDQKGNRIPAVKWFGEDES--------FEGRCFDVTCRIGRNN 543 Query: 576 WRGSKRCQLRVLDA 589 + QL + Sbjct: 544 YSKDAGIQLTLEYM 557 >gi|269122659|ref|YP_003310836.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella termitidis ATCC 33386] gi|268616537|gb|ACZ10905.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella termitidis ATCC 33386] Length = 864 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 165/587 (28%), Positives = 284/587 (48%), Gaps = 32/587 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIP---DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 +W I + + +P DI++ +L +RN+S +FLNPS+ + D Sbjct: 5 KWNFKKVNN-----AEIAKNNELPLDKDILS-ILYSRNISNKKDIIEFLNPSLSNIQ-DH 57 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRI 131 +L D K+ I A+ N + I I+GDYDVDG S +L+ N N YIP R Sbjct: 58 HLLKDLKKSVDIIFDAMKNKKNIWIYGDYDVDGITSTSLLYLVFQKLGYNNINYYIPIR- 116 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG N + +E+ N G LIITVDCG TS++ + +A + + VI+ DHH++ + A Sbjct: 117 DEGYGLNKNAIEQIKNSGGDLIITVDCGITSFEEIDFANSLKLPVIITDHHEINKKLPKA 176 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++NP R D+ +L GV FL+ ++ Q + ++ SLLDL A+ TV Sbjct: 177 SAVINPKREDNEFSFKYLAGVGVAFLLAAGLFEEAGQKD------EVYSLLDLTAIGTVA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGG 309 D+VPL+ NR +V GL PGLK L + T ++G+++ P NA G Sbjct: 231 DIVPLVQENRIFVKFGLEQLLHTEIPGLKYLCSLIFDPGKKEYTTYDVGFILAPVFNAAG 290 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+ ++ + +LL +D+ +E+E+++ +L N R++++ ++ E + Q + + Sbjct: 291 RLKDAKMVVKLLTTDNKREIEIISKELISKNNERKVLQEKIIADVEENI--QKNSLNDNY 348 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFA 428 VIV +H G++G++A+++ + + +P+ + +ED + S RSIEGF++ + + Sbjct: 349 VIVDYSPEYHHGVIGIVASKIIDTYYKPTVIMEVKEDEDIAVASARSIEGFNL--IEALQ 406 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 + +K GGHA AAG T+ N +A + + ID + V Sbjct: 407 TMPELFLKFGGHAGAAGFTIPVKNIKSFIKKINDYAKKKLDENDFVKLINIDKEIPIQKV 466 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546 + +++ P+G GNPNP FA N L++I+ + HL + + A+ F Sbjct: 467 SYEFYQIIDLLKPFGFGNPNPTFAVKNIILENIKHIGQNKNHLMFNIKKNGFVSRNAVWF 526 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F ++ + L V + ++ V D E Sbjct: 527 GAG----SNFKDLNQNIFYDLAFKLKVEDYMDKSYTKVYVDDIKNSE 569 >gi|33596663|ref|NP_884306.1| single-stranded-DNA-specific exonuclease [Bordetella parapertussis 12822] gi|33573364|emb|CAE37348.1| single-stranded-DNA-specific exonuclease [Bordetella parapertussis] Length = 578 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 270/565 (47%), Gaps = 27/565 (4%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 + I +++R+ R V P L+P P LT AA + AI ++ Sbjct: 32 EAAGIHPLLSRLWAARGVIHPEQTRMAWP---ALLP-PDRLTHSAHAAAVLADAIEQGKR 87 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KFINEGAQ 151 ++I DYD DGA + A+ +R LS + + +P+R GYG +P+++E + Sbjct: 88 LLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPD 147 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +IITVD G S D + A GI V++ DHH A A+VNPN+ G HL Sbjct: 148 IIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAG 207 Query: 212 AGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 GV+F +++ + LR+ + L +L DLVAL TV DVV L NR V +GL Sbjct: 208 VGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQ 267 Query: 270 VARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R + PG++AL + +LG+ +GP INA GR+ + +LG L +DD Sbjct: 268 RMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEA 327 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 + +A +LD +N+ RR +E+ M +QA A + D + + V WH G+VGL+A Sbjct: 328 QALEMARELDNINRERRTIEAEMRDQALA--AMEAPDAAAGATVCVFDPGWHQGVVGLVA 385 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445 +RLKEKF RP+ A + + + GSGRSI + + G++ K GGHAMAAG Sbjct: 386 SRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAG 445 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ +F F + P+ + DG L + N + +L+ +GAG Sbjct: 446 LTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQ-QVWGAG 504 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P+F ++S R+V HL++ E + + AI F QS +R+ Sbjct: 505 FAAPLFLDE-FTVRSQRLVGGKHLKLALE-RGHQRFDAIWFGHD---------QSLPERI 553 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590 L N W G QL + A+ Sbjct: 554 QAAYRLEQNIWNGMVSVQLVIEHAA 578 >gi|58582507|ref|YP_201523.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427101|gb|AAW76138.1| single-stranded-DNA-specific exonuclease [Xanthomonas oryzae pv. oryzae KACC10331] Length = 579 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 173/564 (30%), Positives = 271/564 (48%), Gaps = 24/564 (4%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ R V+ P + L+ P +L + D AA + AI +I++ GD Sbjct: 24 PLLRRIYAARGVTDTQGAQ---PRLGQLL-SPELLHNSDVAAALLADAIAQQRRILVVGD 79 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA + A+ +R L + + +P+R+V GYG +P+L+++ +++TVD G Sbjct: 80 FDCDGATACAVGVRGLRMLGALDVHHAVPNRMVHGYGLSPALVDELATLQPDVLVTVDHG 139 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + A +G V+V DHH PA A+V+PN +D L GV+F VL Sbjct: 140 IACHAGVAAAKARGWTVLVTDHHLPGEVLPPADAIVDPNLAEDTFPSKTLAGVGVMFYVL 199 Query: 220 VLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGN 276 + + ++LR DL LLDLVA+ TV D+VPL NRA V GL R +G Sbjct: 200 LALRKVLRARGAFAECAEPDLSVLLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGRGC 259 Query: 277 PGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 GL+ALI+ ++A ++G+ +GP +NA GR+ + LG LL+ +D + +A Sbjct: 260 IGLRALIDASGRDVARLSASDIGFALGPRLNAAGRLEDMALGIELLLCEDWSQARAIAGT 319 Query: 336 LDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEK 393 L+ +N RR ++ M + AE V D + WHPG++GL+A++LK++ Sbjct: 320 LEEINAERRAVQQLMTDDAEQAVTKVVLDADGALPLAACLFDTEWHPGVIGLVASKLKDR 379 Query: 394 FGRPSFAISFEEDGKG--IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 RP A++ E G GS RSI G I +++ G++ GGHAMAAGL++ Sbjct: 380 LHRPVIALAPVEPGSSQLRGSARSIPGLHIRDVLAAVDSRHPGLIQTFGGHAMAAGLSIH 439 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 R FQ +V A + DG L A ++ + L AGP+G G P P Sbjct: 440 RTALATFEQAFQAQVMAMVDASLLHAELHSDGELAAHELDHVHAEALRMAGPWGQGFPEP 499 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F ++ RV+ HL++T E L AI F + L + + Sbjct: 500 LFDGQ-FEVLQHRVLKERHLKLTLRCAGRAEPLNAIHFNGWRGSEPARL-------VRLA 551 Query: 569 GHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V P Sbjct: 552 YRLVADDYRGGTAVQLIVEHCEPA 575 >gi|148826178|ref|YP_001290931.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittEE] gi|148716338|gb|ABQ98548.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittEE] Length = 531 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 152/496 (30%), Positives = 252/496 (50%), Gaps = 13/496 (2%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G +S++ + + +GI V+V DHH PA A+VNPN L GV F + Sbjct: 135 GVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGVAFYL 194 Query: 219 LVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQG 275 ++ + R+ + LLDLVAL TV DVVPL NR +GLM R R+ Sbjct: 195 MLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRIRARRC 254 Query: 276 NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + LA+ Sbjct: 255 RPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKARELAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLKEK 393 LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K++ Sbjct: 315 DLDELNQMRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRIKDQ 374 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERV 451 + RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL++ Sbjct: 375 YHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGLSIREE 434 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 +F F + + + V DG LN++ N+ ++++S G +G G P P F Sbjct: 435 HFADFQHLFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCF 494 Query: 512 AFPNHKLQSIRVVNLA 527 K+ R + Sbjct: 495 DGE-FKILDQRAIGQN 509 >gi|262066587|ref|ZP_06026199.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium periodonticum ATCC 33693] gi|291379722|gb|EFE87240.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium periodonticum ATCC 33693] Length = 852 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 167/581 (28%), Positives = 286/581 (49%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + R + + ++ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKINYERIFENKGEKKLDFVIESLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI N+EKI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DIDIAVKRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ E A L+I+VDCG S + + +A G+D I+ DHH++ + A+A++N Sbjct: 114 LNKDAIQSLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F++ +Y L + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSYKYLAGVGTAFMLTYALYSKLDRLN------DLEKFLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 NR +V +GL + G+K L+ ++ + ++GY+I P NA GR+ Sbjct: 228 TSDNRKFVKRGLKLLNNTRWIGIKQLLRKIFPDDWDTREYCSYDVGYLIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I +D E + +L N R+ ++ +LE + ++ + + ++I+ Sbjct: 288 DAKQAVSLFIEEDGFECLTIIDQLLTNNTERKNIQKKILEASITEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +PS + +E +G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGLNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N K+ P + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFPKELFVKTIKIENILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + + I F Sbjct: 464 FLRELEILEPYGAKNHTPIFAFKNCEYENLRFTRNSTEHLMLDIKKGNYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + K++ V L + ++ C+L++ D Sbjct: 524 DY----YDIIASSKKIDVAFKLKLETFKDRYMCKLQLEDVK 560 >gi|258453611|ref|ZP_05701589.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A5937] gi|257864342|gb|EEV87092.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus A5937] Length = 693 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 147/526 (27%), Positives = 255/526 (48%), Gaps = 25/526 (4%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GYGP Sbjct: 1 MTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V+P Sbjct: 61 NELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 LC AGV + + + + LVA+ T+ D+V L Sbjct: 121 MHPSFNYPFQQLCGAGVAYKLAQALIENVPD-----------YFKALVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++L Sbjct: 170 DENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDASLA 229 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 LL++DD +E LA +++ N+ R+ + + + E+A A T+ +++ + Sbjct: 230 CELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAKEN 287 Query: 378 WHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++G++A+++ E F P+ ++ E GS RSI+ + + + ++ K Sbjct: 288 WHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSM--FEILSAHQELIAK 345 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH MAAG+T++ N L + K+ + PV +D +L + + I I + Sbjct: 346 FGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIRDM 405 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 P+G P+F + + S++ + HL++T + L F G Sbjct: 406 NRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHLEP 461 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 E + + +++ G + +N W G++ QL + D + E + Sbjct: 462 ELQDE---QPINILGSVQINEWNGNQSPQLIIQDIAMNEQQILDYR 504 >gi|258404430|ref|YP_003197172.1| single-stranded-DNA-specific exonuclease RecJ [Desulfohalobium retbaense DSM 5692] gi|257796657|gb|ACV67594.1| single-stranded-DNA-specific exonuclease RecJ [Desulfohalobium retbaense DSM 5692] Length = 577 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 168/587 (28%), Positives = 268/587 (45%), Gaps = 27/587 (4%) Query: 17 RWVSLLGQEGINRAL--AITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL 73 +W+ A ++ I + +L R +S FL+P +R L P P Sbjct: 5 QWIFREQPASEKTAEFSTWAKQLEISPFLCDLLWQRGLSSPQEMDVFLSPGLRHLAP-PH 63 Query: 74 ILTDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + ++AA + A+ + ++GDYDVDG + AL+ L ++P+R+ Sbjct: 64 TWSGLNEAAAVLAAALEQDTGPLAVWGDYDVDGITATALVTEILRGRGYAVLPHLPNRME 123 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYG N + +E ++G + ++TVDCG +A+ A G+ V+V DHHQ + PA Sbjct: 124 DGYGLNTAGIEALYDQGVRALLTVDCGMGDLEAITRAKELGMRVVVSDHHQPHATLPPAD 183 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+VNP D L G F ++ + R+L DL LDLVAL T+ D Sbjct: 184 AIVNPCV--DACPCPELAGVGTAFFLMAALNRLLP-----GTPSDLRPSLDLVALGTIAD 236 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGR 310 VV L G NR GL++ PG+ AL E +PI A + + + P INA GR Sbjct: 237 VVSLRGQNRIVAKNGLLLLSEGSRPGIYALKEASRLPGKAPIGAGQVAFGLAPRINAAGR 296 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 +G + LL++ D + LA KL+ NQ RR E +LEQA +V + Sbjct: 297 MGSATEALDLLLAPDLATAQPLAAKLEAANQERRTCEDGILEQAVTQVEERGVTEGL--- 353 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ +WH GI+G++A+R+ E+F RP+ ++ G GSGRSI D+ ++ Sbjct: 354 -VLADAQWHQGIIGIVASRVVERFYRPTILLTRHN-GYWKGSGRSIVDVDLHAALTEC-- 409 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L GGH AAGL++ N F + + P K+DG + +++ Sbjct: 410 ADLLAGFGGHPQAAGLSLTEANLKPFTQRFSQAISKQLGGAEPLPRLKLDGHIPFGQIDL 469 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY 549 LI +E P+G GNP PVF ++Q V H+ + + + L A+R Sbjct: 470 DLIREIELLQPFGMGNPQPVFCSEPLQVQKHNVFGKKHVSLQLQDPKSGIVLTGKAWRQA 529 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEGH 595 +G+ + + +N+++G L + D P + Sbjct: 530 EA----LTPSIQGETVQLAFTPRLNHYQGLTSIDLDIKDWRLPHDRE 572 >gi|257125176|ref|YP_003163290.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia buccalis C-1013-b] gi|257049115|gb|ACV38299.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia buccalis C-1013-b] Length = 997 Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats. Identities = 152/577 (26%), Positives = 275/577 (47%), Gaps = 34/577 (5%) Query: 35 QKHAIPDIVA----RVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89 + + ++ ++L +R ++ + ++FLNP + + +P L D +K I +AI Sbjct: 47 ENTNLSSVIDNDILKILYSRGITTEKEIREFLNPKLGNIQ-NPYGLQDMEKTVLEIEKAI 105 Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINE 148 + I I+GDYDVDG S +++ L N N YIP R +GYG N ++K Sbjct: 106 KEQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKKS 164 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYALVNPNRLDDLSGQG 207 GA L+ITVDCG T++ +++A + + +I+ DHH + A +VNP R ++ Sbjct: 165 GADLVITVDCGITAFPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENDFSFE 224 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 L G +F+V++ +Y + + LDLVA+ TV D+VPL+ NR G Sbjct: 225 FLAGVGTIFMVILCLYERIGKK------AKAYKYLDLVAIGTVADIVPLMEENRILTKFG 278 Query: 268 LMVARRQGNPGLKAL--------IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 L R N GL+ L N + + ++G++I P NA GR+ ++ + + Sbjct: 279 LEQLSRSKNKGLRFLLYKLFSIQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAKMVVK 338 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LLISD+ +E+E++ +L N R+ +++ ++E+ E + + D+++ VIV +H Sbjct: 339 LLISDNDREIEIIVKELINKNFERKELQNEIVEKVEKHI--EESDLKEDYVIVDYSPEYH 396 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 G++G+ A+++ +K+ +P+ I +ED G +GS RSI F+I + + + VK G Sbjct: 397 HGVIGIAASKIVDKYYKPAIIIEVKEDEGIAVGSCRSIGNFNI--LEALQSMPELFVKFG 454 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GH+ AAG T+ N KFA + + +ID + ++ ++E Sbjct: 455 GHSGAAGFTIGIKNLELFKKKINKFAKTKLKEEDFVKIIEIDKQIPIQKISYEFFQIIEL 514 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G GNP P F N ++I+ + H+ + + A+ F F Sbjct: 515 LKPFGFGNPMPTFRTNNVLFENIKFIGENKNHIMFDIKQKGFFNRNAVWFNSGEY----F 570 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + L ++ ++ + D + Sbjct: 571 KELNENLFYDIVYKLKTEMFQDRYYTKVYIEDVKVSK 607 >gi|319787360|ref|YP_004146835.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoxanthomonas suwonensis 11-1] gi|317465872|gb|ADV27604.1| single-stranded-DNA-specific exonuclease RecJ [Pseudoxanthomonas suwonensis 11-1] Length = 575 Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats. Identities = 176/565 (31%), Positives = 270/565 (47%), Gaps = 22/565 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R P + L+P P L A + AI + I++ Sbjct: 23 NVPPLLRRIYAARGADRFELA---RPRLSDLLP-PDALGGLAAALELLAAAIRDGRHIVV 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L + +P+R+V GYG +P+L+++ +L++TV Sbjct: 79 VGDFDCDGATACAVGVRGLRMLGAKRVSHAVPNRMVHGYGLSPALVDELAALQPELLVTV 138 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH + PA A+VNPN D L GV+F Sbjct: 139 DHGIACHAGVAAARARGWQVLVTDHHLPGQQLPPADAIVNPNCAGDAFPSKCLAGVGVIF 198 Query: 217 LVLVLIYRILRQDNKVPL-NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-Q 274 VLV + R LRQ P DL +LLDLVA+ T+ D+VPL NRA GL R Q Sbjct: 199 YVLVALRRHLRQAGAFPQGEPDLSTLLDLVAVGTIADLVPLDANNRALAAAGLRRLRAGQ 258 Query: 275 GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 G GL+AL+E +TA ++G+ +GP +NA GR+ + LG L++DD LA Sbjct: 259 GCAGLRALVEVCGRDMACLTAADIGFAVGPRLNAAGRLEDMALGIECLLTDDPARARELA 318 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKV-LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 L+ +N RR ++ AM + AEA + + + + WHPG+VGL+A+++KE Sbjct: 319 GILNDINAERRAVQQAMTDDAEAALSRARIGEGAPPLAPCLFDPEWHPGVVGLVASKMKE 378 Query: 393 KFGRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 + RP A + E G GS RSI GF I ++ A G++ + GGHAMAAGLT+ Sbjct: 379 RLHRPVLAFAPAEPGAQVLRGSARSIPGFHIRDALAAVDARHPGLVQRFGGHAMAAGLTL 438 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + N + A + + DG L + + L GP+G G P Sbjct: 439 DLANLPAFEQAWLAHAQAALDDGLLQAELLSDGELLPQEFDRFHAEALRDGGPWGQGFPE 498 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 P+F + ++ R + HL++ + L AI F + + +H+ Sbjct: 499 PLFDG-HFEVLEWRPIGERHLRLRLRHPERREPLAAIHFGGWQGG-------APAPHLHL 550 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L + +RG QL V A+P Sbjct: 551 AYRLQPDDYRGGAAVQLVVEHAAPA 575 >gi|87124621|ref|ZP_01080469.1| hypothetical protein RS9917_00327 [Synechococcus sp. RS9917] gi|86167500|gb|EAQ68759.1| hypothetical protein RS9917_00327 [Synechococcus sp. RS9917] Length = 622 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 157/574 (27%), Positives = 262/574 (45%), Gaps = 26/574 (4%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W A +P + VL R + +D L + L Sbjct: 2 WQLPPACGEDPLAAV-----PLPLPLRAVLARRGLDRAQVEDLL--QMPPLPEATEHFPQ 54 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 A RR+ +A +E + I GDYD DG S AL++R L N IP R+ DGYG Sbjct: 55 LAVAVRRLRRACDGAEAVAICGDYDADGMTSTALLIRALRALGANPVAAIPSRMDDGYGL 114 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 NP ++E+ EG +L++TVD G ++ +AL+ A +G++VI+ DHH + S A AL++P Sbjct: 115 NPGMVERLHGEGIRLLVTVDNGVSAAEALKAAAQRGMEVILTDHHTLPSPPPEALALIHP 174 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + S L G+ +++ + + + + + DL + T+ D+ PL Sbjct: 175 ATTPEASPYRGLAGVGLAYVLGHALAQAMGRPEAIETAR------DLFCVGTIADMAPLT 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGESNL 316 G NR ++ +GL R GL+AL + + + +G+ I P INA GR+G+ L Sbjct: 229 GANRNWLRQGLATLHRSRCEGLRALQQLAGLEETPLRADAIGFQIAPRINAVGRLGDPRL 288 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL +DD E LA + D LN+ RR + A+ +A A + D + A +++ Sbjct: 289 VVELLTADDPGEAIELARQCDALNRQRRELCDAIEAEALALLDADGDSL--APFLLLAQG 346 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G++G++A+RL E+F RP ++ E DG+ S R+ EGF + + ++ E L + Sbjct: 347 HWHHGVIGIVASRLMERFQRPVALLAGEGDGRLRASVRAPEGFAVDQALTSCAEH--LER 404 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A G TV L A + + + +L ++ L Sbjct: 405 FGGHPAAGGFTVRAEAVHALHAQLNGLALAWQQSQPLGQPVRPEALLALDQIDRRFWQHL 464 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + P+G G+ +PVF + ++ R + HL+++ Q + IA+R Sbjct: 465 LALEPFGVGHRSPVFWARDCQVLEERRLRGGHLRLSLR-QGEARCEGIAWRWD------- 516 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +R+ + + +N W G +R QL +L Sbjct: 517 SPGPVPERLDLAFRVGLNRWNGEERLQLEILALR 550 >gi|121610124|ref|YP_997931.1| single-stranded-DNA-specific exonuclease RecJ [Verminephrobacter eiseniae EF01-2] gi|121554764|gb|ABM58913.1| single-stranded-DNA-specific exonuclease RecJ [Verminephrobacter eiseniae EF01-2] Length = 576 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 176/584 (30%), Positives = 259/584 (44%), Gaps = 30/584 (5%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 E RA+ ++ + ++AR+ R V AKD L+ + L+P P L AAR Sbjct: 7 EIPPRAVWTLEQAGVHPLLARLYAARGVR---AKDELDDDLARLLP-PQGLKGIAAAARL 62 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143 + A+ ++++I DYD DGA + A+ +R L + + +PDR+ DGYG P + Sbjct: 63 LADAVARDQRLLIVADYDCDGATACAVGVRGLRLLGARHVDYLVPDRMTDGYGLTPPIAR 122 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + GA L+ITVD G S + A G+ V+V DHH E A A+VNPN+ Sbjct: 123 RVKERGADLLITVDNGIASVAGVAEAKALGLSVLVTDHHLPGPELPAADAIVNPNQPGCG 182 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDN--KVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 L GV+F VL+ + LR L LL LVAL TV DVV L NR Sbjct: 183 FESKALAGVGVMFYVLLALRSELRARALLNADTQPRLDPLLALVALGTVADVVKLDANNR 242 Query: 262 AYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL R P A + T + G+ +GP INA GR+ + LG Sbjct: 243 RLVAQGLRRIRTGTLPAGVAALFTAAGRKAQAATTFDFGFALGPRINAAGRLADMTLGIE 302 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI-QQASVIVVEGDRW 378 L++DDS LA LD +N+ RR +E M QA C I V + Sbjct: 303 CLLTDDSGRAAELAGTLDRINRERRTIEDGMRGQAMLLAENLCAGGAAPPPAISVFDPDF 362 Query: 379 HPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEG 432 H G+ G++A+R+K+K RP+F + ++ + GSGRSI GF + + G Sbjct: 363 HEGVAGIVASRIKDKLHRPAFVFAVSRAPGKEHELKGSGRSIAGFHLRDALDLVAKRHPG 422 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L+K GGHAMAAG T+ F + A + A T + DG L + Sbjct: 423 VLLKFGGHAMAAGCTLAAQTFAVFEQALAQVAQEWLDAATLTRRIETDGPLAREYCRAEM 482 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVYG 550 +D L +G G P F ++ S R+V H L++ Q + I F Sbjct: 483 VDTLHR-EVWGQGFAPPTF-SEEVEVLSQRLVGDKHPALKLKLRHQ-GHPVDGIWFGHTE 539 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 R+ + L VN ++G ++ Q + A + Sbjct: 540 ---------PLPARVLLAFRLDVNEYQGERKVQFLIEGAQLSQS 574 >gi|294783140|ref|ZP_06748464.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp. 1_1_41FAA] gi|294480018|gb|EFG27795.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp. 1_1_41FAA] Length = 852 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 167/581 (28%), Positives = 286/581 (49%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + R + + ++ ++ NRN+S+D DF +P L Sbjct: 6 KWIV-ENKINYERIFENKGEKKLDFVIESLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI N+EKI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DIDIAVKRIFKAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ E A L+I+VDCG S + + A G+D I+ DHH++ A+A++N Sbjct: 114 LNKDAIQSLKEEEANLVISVDCGINSIEEINLANELGLDFIITDHHEIIGNLPKAFAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y L + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSYKYLAGVGTAFMLVYALYSKLDRLN------DLEKFLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 NR +V +GL + G+K L+ +V + ++GY+I P NA GR+ Sbjct: 228 TSDNRKFVKRGLKLLNSTRWIGIKQLLRKVFPEDWDTREYCSYDVGYLIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I +D + + +L N R+ ++ +LE + A++ + ++ ++I+ Sbjct: 288 DAKQAVSLFIEEDGFKCLTIIEQLLANNSERKNIQKKILEASVAEI--EKKELYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +PS + +E +G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGLNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N K+ + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFSKDLFVKNIKIENILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + + I F Sbjct: 464 FLRELEILEPYGAKNHTPIFAFKNCEYENLRFTRNSTEHLMLDIKKDNYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + K++ V L + ++ C+L++ D Sbjct: 524 DY----YDIIANSKKIDVAFKLKLETFKDRYMCKLQLEDIK 560 >gi|325981202|ref|YP_004293604.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosomonas sp. AL212] gi|325530721|gb|ADZ25442.1| single-stranded-DNA-specific exonuclease RecJ [Nitrosomonas sp. AL212] Length = 590 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 169/575 (29%), Positives = 264/575 (45%), Gaps = 36/575 (6%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 +P ++AR+ R + L + L+P L + A + AI +++ Sbjct: 19 DCGLPPVLARIFAARGI---ENSSELETELIRLIP-FAQLKNITVTAALLADAIAAKKRL 74 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLII 154 +I DYD DGA + A+ +R L + +P+R GYG P ++ + +I Sbjct: 75 LIIADYDSDGATACAVGIRILRKFGATIDYLVPNRFEFGYGLTPEIVHLAHETKQPDFLI 134 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G S + + A G+ VI+ DHH E A A++NPN+ + + GV Sbjct: 135 TVDNGIASVEGVSTANRLGMQVIITDHHLPGDELPAAMAIINPNQPNCPFPSKSIAGVGV 194 Query: 215 VFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +F +++ + LRQ +L LDLVAL TV DVV L NR V +GL R Sbjct: 195 IFYLMLALRAELRQRGAFATGQEPNLAGFLDLVALGTVADVVKLDSNNRILVQQGLGRIR 254 Query: 273 R-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + G+ AL++ I+ LG+M+GP +NA GR+ + +LG LI+DD Sbjct: 255 KGRACAGINALLQISRRDYAQISTYELGFMLGPRLNAAGRLDDMSLGIECLITDDEAHAL 314 Query: 331 MLAMKLDVLNQNRRLMESAMLEQA----EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +A +LD LN+ RR +ES M E A E + T+ ++IQ A I + WH G++G+L Sbjct: 315 EIAKQLDELNRQRREIESTMQESALIKLEHILKTRDEEIQTAYSICLFDQDWHQGVIGIL 374 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A+R+K+K+ RP + G+ GSGRSI GF + + ++ K GGHA AA Sbjct: 375 ASRIKDKYHRPVIIFAPGSHGEIKGSGRSINGFHLRDALDLVAKRYPELIRKFGGHAAAA 434 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 GLT+ + + D F+ A ++ T V + DG L + +N+ L L+ +G Sbjct: 435 GLTIHSDDLEKFRDAFEHVAQILLTPANLTQVIETDGDLELAEINLELAAYLDR-QVWGQ 493 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQ-------MTFESQDSET---LQAIAFRVYGTPLG 554 G P P F ++S R+V HL+ T Q ++ I F Sbjct: 494 GFPQPSFNAR-FYVESQRIVGEKHLKLKLRKLDCTDRDQSRKSDNAFDGILF-------- 544 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F + L VN + G Q + Sbjct: 545 -FQSDPLPDIIDAVYRLQVNEYNGKTSLQFLLEHW 578 >gi|88808715|ref|ZP_01124225.1| RecJ exonuclease [Synechococcus sp. WH 7805] gi|88787703|gb|EAR18860.1| RecJ exonuclease [Synechococcus sp. WH 7805] Length = 631 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 158/577 (27%), Positives = 271/577 (46%), Gaps = 27/577 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W +GI A A+P + VL R + + + + L+ D Sbjct: 8 QQWRLPRPIDGIPLDRA-----ALPQPLRAVLYRRGLLTTEDVEALLSDQDPPAPHD--H 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 A R+ A + E + + GDYD DG S AL++R IP R+ DG Sbjct: 61 FPQLAPALARLRTACESGEALAVCGDYDADGMTSTALLLRAFRCLGARPKAAIPSRMDDG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG NP ++E+ EG +L+ITVD G + +AL+ A + +DVI+ DHH + ++ A AL Sbjct: 121 YGLNPGMVEQLHAEGIRLLITVDNGVAAKEALERAEDLEVDVILTDHHTLPDQQPKAMAL 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + S L G+ ++V + + + + + DL + TV D+ Sbjct: 181 IHPATTPEKSPYRSLAGVGLAYIVARTLALEMNRPEAIANSR------DLFCIGTVADMA 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR+ + +GL R PG++AL + P+ A+++G+ + P INA GRIG+ Sbjct: 235 PLTGANRSLLKEGLKHLHRSSCPGVQALQQLAGLGDRPLIADDIGFQLAPRINAVGRIGD 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L LL ++D + L + DVLN+ RR + A+ +A A + + D S +++ Sbjct: 295 PVLVVDLLTAEDQNQAYELGRRCDVLNRQRRDLCDAIEAEAIALL--ESDPSPLPSFVLL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++AARL E++ RP+ ++ + +G S R+ EGF + + + + Sbjct: 353 AQSHWHHGVIGIVAARLVERYQRPAALLAADGEGLMRASVRAPEGFAVDEALRNC--GHL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH A G TV+ L + + A + + + + +L +N L Sbjct: 411 LERFGGHPAAGGFTVQASAVTELHEELNQLATAWIDQRGQGLLVEPEALLTLEEINHDLW 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 L+ P+GAG+P P+F ++ + H ++T E Q+ QAI +R T Sbjct: 471 AGLQKLEPFGAGHPKPLFWSRGCRVTDQHFLRGGHRRLTLE-QNGTERQAIFWRWPAT-- 527 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + + N+WRG R QL + Sbjct: 528 -----ATLAQTIDLAYRVTQNHWRGETRFQLDIQALR 559 >gi|148239447|ref|YP_001224834.1| single-stranded DNA-specific exonuclease [Synechococcus sp. WH 7803] gi|147847986|emb|CAK23537.1| Single-stranded DNA-specific exonuclease [Synechococcus sp. WH 7803] Length = 631 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 160/579 (27%), Positives = 267/579 (46%), Gaps = 27/579 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W G+ + A+P+ + VL+ R + + + L+ D Sbjct: 8 QQWRLPRPIAGLPL-----EGLALPEPLRAVLIRRGMSTSADVEALLSDQAPPSPHD--H 60 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 A R+ A E + + GDYD DG S AL++R N IP R+ DG Sbjct: 61 FPQLAAAIARLKTACQTGESLAVCGDYDADGMTSTALLLRAFRVLGANPKAAIPSRMDDG 120 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG NP ++E+ EG +L+ITVD G + +ALQ A + +DVI+ DHH + + A AL Sbjct: 121 YGLNPGMVEQLHAEGIRLLITVDNGVAATEALQRADDLAVDVILTDHHTLPDQPPKAMAL 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + S L G+ ++V + + + + + DL + TV D+ Sbjct: 181 IHPATTPEDSPYQGLAGVGLAYIVAHTLALEMNRPEAIASSR------DLFCIGTVADMA 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR+ + +GL R PG++AL + P+ A+++G+ + P INA GRIG+ Sbjct: 235 PLTGANRSLLKEGLKHLHRSRCPGVQALQQLAGLGERPLVADDIGFQLAPRINAVGRIGD 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L LL ++D + L + DVLN+ RR + A+ +A A + + D +++ Sbjct: 295 PVLVVDLLTAEDQDQAYELGRRCDVLNRQRRELCDAIEAEAIALL--ESDPSPLPPFLLL 352 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WH G++G++AARL E++ RP+ ++ + DG S R+ EGF + + + + Sbjct: 353 AQGHWHHGVIGIVAARLVERYQRPAALLAADGDGLMRASVRAPEGFAVDEALKHC--GHL 410 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH A G TV L K A + + + + +L +N L Sbjct: 411 LERFGGHPAAGGFTVHASAVTELHAGLNKLAATWIEQRGEGLLVEPEALLTLEEINHDLW 470 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 L+ P+GAG+P P+F ++ + + H ++T E Q+ QAI +R Sbjct: 471 AGLQKLEPFGAGHPKPLFWSRGCRVADQQSLRGGHRRLTLE-QNGTERQAIIWRWPAG-- 527 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + + L N+WRG R QL V Sbjct: 528 -----TAIAQTIDLAYRLTQNHWRGETRFQLEVQALRTH 561 >gi|33592242|ref|NP_879886.1| single-stranded-DNA-specific exonuclease [Bordetella pertussis Tohama I] gi|33571887|emb|CAE41403.1| single-stranded-DNA-specific exonuclease [Bordetella pertussis Tohama I] gi|332381659|gb|AEE66506.1| single-stranded-DNA-specific exonuclease [Bordetella pertussis CS] Length = 566 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 270/565 (47%), Gaps = 27/565 (4%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 + I +++R+ R V P L+P P LT AA + AI ++ Sbjct: 20 EAAGIHPLLSRLWAARGVIHPEQTRMAWP---ALLP-PDRLTHSAHAAAVLADAIEQGKR 75 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KFINEGAQ 151 ++I DYD DGA + A+ +R LS + + +P+R GYG +P+++E + Sbjct: 76 LLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPD 135 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +IITVD G S D + A GI V++ DHH A A+VNPN+ G HL Sbjct: 136 IIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAG 195 Query: 212 AGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 GV+F +++ + LR+ + L +L DLVAL TV DVV L NR V +GL Sbjct: 196 VGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQ 255 Query: 270 VARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R + PG++AL + +LG+ +GP INA GR+ + +LG L +DD Sbjct: 256 RMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEA 315 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 + +A +LD +N+ RR +E+ M +QA A + D + + V WH G+VGL+A Sbjct: 316 QTLEMARELDNINRERRTIEAEMRDQALA--AMEAPDAAAGATVCVFDPGWHQGVVGLVA 373 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAG 445 +RLKEKF RP+ A + + + GSGRSI + + G++ K GGHAMAAG Sbjct: 374 SRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAG 433 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ +F F + P+ + DG L + N + +L+ +GAG Sbjct: 434 LTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQ-QVWGAG 492 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P+F ++S R+V HL++ E + + AI F QS +R+ Sbjct: 493 FAAPLFLDE-FTVRSQRLVGGKHLKLALE-RGHQRFDAIWFGHD---------QSLPERI 541 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590 L N W G QL + A+ Sbjct: 542 QAAYRLEQNIWNGMVSVQLVIEHAA 566 >gi|19703716|ref|NP_603278.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713842|gb|AAL94577.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 844 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 160/580 (27%), Positives = 281/580 (48%), Gaps = 31/580 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI N++KI I+GDYDVDG SV+L+ S N N YIP R +GYG Sbjct: 55 DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLAFSELGANVNYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A L+I+VDCG S + + +A +D I+ DHH++ A A++N Sbjct: 114 LNKEAIQILKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGGIPKALAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSFKYLAGVGTAFMLIYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V KGL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 VSDNRKFVKKGLETLKNTKWIGIKQLLRKIFPDNWDTKEYFAYDIGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L + +D + + KL N R+ ++ +LE + A++ + + ++I+ Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNTERKDIQKKILEMSIAEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H G++G++A+++ +K+ +P+ + +E +G+ + D+ + Sbjct: 346 VANKAFHHGVIGIVASKILDKYYKPTIIMEIKES-EGVATASCRSIGDLNIVECLNSVSD 404 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ILVK GGH+ AAG T++ N ++ + KI+ +L VN Sbjct: 405 ILVKYGGHSGAAGFTIKIENIEEFYVRIDRYVEENFDKDLFIKKLKIEKILAPYKVNYEF 464 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 + LE PYGA N PVFAF N + +++R HL + + I F Sbjct: 465 LKELEILEPYGAKNHTPVFAFRNCQYENLRFTKNSTEHLMLDIKKDGYYFKNCIFFGGGD 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + S K + + L + ++ C+L++ D Sbjct: 525 Y----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 560 >gi|256845682|ref|ZP_05551140.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_36A2] gi|256719241|gb|EEU32796.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_36A2] Length = 844 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 166/581 (28%), Positives = 287/581 (49%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D + A +RI +AI N++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DMEVATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A LII+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 114 LNKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V +GL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 VSDNRKFVKRGLKLLNNTKWIGIKQLLRKIFPDNWDTREYFAYDVGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I +D + + KL N R+ ++ +LE + A++ + + ++I+ Sbjct: 288 DAKQAVSLFIEEDGFKCLSIIDKLLENNVKRKDIQKKILEMSIAEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N KF + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKFIEENFDKDLFIKKLKIEKILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + S K + + L + ++ C+L++ D Sbjct: 524 DY----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 560 >gi|160901822|ref|YP_001567403.1| single-stranded-DNA-specific exonuclease RecJ [Petrotoga mobilis SJ95] gi|160359466|gb|ABX31080.1| single-stranded-DNA-specific exonuclease RecJ [Petrotoga mobilis SJ95] Length = 1035 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 164/580 (28%), Positives = 273/580 (47%), Gaps = 20/580 (3%) Query: 18 WVSLLG--QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 W Q+ A ++ I D +A++LV+RN+ + + FLN + L DP + Sbjct: 9 WDPKASYYQQKDKVAKTLSSALGISDFLAKLLVSRNIETPEEGDKFLN-HLELESFDPYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA + Q EK+ IFGDYDVDG + +++ L + YIP RI +G Sbjct: 68 MKDMSKAVEILKQIKEKKEKVAIFGDYDVDGVTATSVLYLGLKKIGYDVTSYIPSRIEEG 127 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 Y N +E+ ++ IITVDCG+TS ++YA + G+ VIV DHH + A A+ Sbjct: 128 YSLNVKAIEELKSKNYNNIITVDCGTTSIQEIEYAKSLGMKVIVTDHHLPQENLPKADAI 187 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP R DD L GV F +L +Y+ + D +DLVA+ T+ D+V Sbjct: 188 LNPKREDDKYPFKDLAGVGVTFKLLQALYK------SYDNSLDPFEYIDLVAVGTIADIV 241 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGE 313 + NR V GL + GLK L++ + I S I + + + + P INA GR+ + Sbjct: 242 SITSENRYLVKIGLNKLKTNPTKGLKYLLDELKIVDSEINSRTITFKVAPKINAAGRMSD 301 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + LLI D ++L+ +L LN R+ E + +L + ++ V+V+ Sbjct: 302 ARSAFNLLIEKDEEKLKKAVSELLRLNSKRQSTEKEIYLY-SLSLLDLYPEYKKDPVLVL 360 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WH G++G++A++L +F +P IS ++ G GSGRS +G D+ +++ E GI Sbjct: 361 SGEDWHMGVLGIVASKLSNQFNKPVLMISKNQE-MGKGSGRSPQGIDLMELLLKVNERGI 419 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 + GGH AAG ++ N L + + T +D + + + Sbjct: 420 FEEFGGHKFAAGFSILSKNIEALRKEINEVYKELYGDKKLTSQIDVDMEI--EGIWETMF 477 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTP 552 + + P+G GN PVF N KL++IR + ++DS + + + + G Sbjct: 478 EDINKLEPFGYGNQEPVFLIKNAKLENIRFFRNGSQSFSGTLNKDSLIIDILGYDL-GYR 536 Query: 553 LGEFLMQSRGKRM-HVTGHLCV-NYWR-GSKRCQLRVLDA 589 L E S+ + G + N + + + + D Sbjct: 537 LSELTENSKKDLFTDLVGTFRIENSYNLKNSYVKFYLQDL 576 >gi|296327982|ref|ZP_06870517.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154938|gb|EFG95720.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 844 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 160/580 (27%), Positives = 281/580 (48%), Gaps = 31/580 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI N++KI I+GDYDVDG SV+L+ S N N YIP R +GYG Sbjct: 55 DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLAFSELGANVNYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A L+I+VDCG S + + +A +D I+ DHH++ A A++N Sbjct: 114 LNKEAIQILKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGGIPKALAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSFKYLAGVGTAFMLIYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V KGL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 VSDNRKFVKKGLETLKNTKWIGIKQLLRKIFPDNWDTKEYFAYDIGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L + +D + + KL N R+ ++ +LE + A++ + + ++I+ Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNTERKDIQKKILEMSIAEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H G++G++A+++ +K+ +P+ + +E +G+ + D+ + Sbjct: 346 VANKAFHHGVIGIVASKILDKYYKPTIIMEIKES-EGVATASCRSIGDLNIVECLNSVSD 404 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ILVK GGH+ AAG T++ N ++ + KI+ +L VN Sbjct: 405 ILVKYGGHSGAAGFTIKIENIEEFYVRIDRYVEENFDKDLFIKKLKIEKILAPYKVNYEF 464 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 + LE PYGA N PVFAF N + +++R HL + + I F Sbjct: 465 LKELEILEPYGAKNHTPVFAFRNCQYENLRFTKNSTEHLMLDIKKDGYYFKNCIFFGGGD 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + S K + + L + ++ C+L++ D Sbjct: 525 Y----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 560 >gi|116491093|ref|YP_810637.1| single-stranded DNA-specific exonuclease [Oenococcus oeni PSU-1] gi|116091818|gb|ABJ56972.1| exonuclease RecJ [Oenococcus oeni PSU-1] Length = 622 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 163/580 (28%), Positives = 284/580 (48%), Gaps = 37/580 (6%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 + + W Q I Q ++ + + VL R S+ +DF + + L+ DP Sbjct: 4 NQYFWFKR--QTDKQFIQKIEQHFSLDRLTSTVLAGRFSSVPLIEDFFSSDLNKLV-DPS 60 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L + +R++ AI N EKI I+GDYD DG S +++++ L + +IP+R D Sbjct: 61 RLDQIELLKKRLISAIDNQEKITIYGDYDADGITSTSILLKTLQILGARVDYFIPNRFRD 120 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + ++ I+ G +LI VD G + +DA+ A +DV++ DHHQ+ + A A Sbjct: 121 GYGPNKFVYQQLIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAKA 180 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P+ DD +L AAG+ F V + + P LVA+ + DV Sbjct: 181 IIHPDLSDD-YPFKNLSAAGIAFKVSKYLLGTQKARQFFP----------LVAIGEIADV 229 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 +PLI NR + G+ + + N GL+ +I+R ++ +TA+++ + I P +N+ GR+ Sbjct: 230 MPLINENRILIQTGIDLIKSGENKGLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMA 289 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ +G LL +DDS ++ +A +++ LN+ R+ + A +V Q+ ++I+ Sbjct: 290 DAGIGVELLTTDDSDKVSEIAKQVEHLNKQRQKEADKIYRIASRQV-----SPQENNIII 344 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V G+ WH GI+G++A RL FGRP+ S ++G GS RS FD+ K++ A Sbjct: 345 VSGENWHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKVLDRA--RD 401 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAGL+++ + RL + ID V+ A ++I Sbjct: 402 LYISFGGHKQAAGLSLKASDLDRLDKILNAD-----DYHFSVGRLAIDAVIKAEDLSIDS 456 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 L P+G GNP P+F + +L ++R++ H ++ + L F Sbjct: 457 FKQLSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSGDIL---FFNRPD 513 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+R+ + G L +N W+ + Q+ D Sbjct: 514 L----IGKLQLGERLSIVGTLSLNEWKHRQSLQIIGKDIR 549 >gi|58697289|ref|ZP_00372658.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Drosophila simulans] gi|58536352|gb|EAL59823.1| single-stranded-DNA-specific exonuclease RecJ [Wolbachia endosymbiont of Drosophila simulans] Length = 481 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 200/485 (41%), Positives = 290/485 (59%), Gaps = 12/485 (2%) Query: 10 ECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM 69 + SI+ W + + L +TQ+ +P+I+AR+LV R V+I+ A DFL P IR L+ Sbjct: 7 KRSITNALWKLQ--EADQRQILTLTQRFELPEILARILVTRGVNIENASDFLYPLIRSLL 64 Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 PDP L D DKA RI++AI N E + IFGDYDVDGA S AL+ R+L +++ +YIPD Sbjct: 65 PDPFHLLDMDKAVSRIIRAIKNDENLAIFGDYDVDGATSSALINRYLRAIDIHSIIYIPD 124 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ +GYG + + + G L I+VDCG+ +Y ++ A G+D+IV+DHH + Sbjct: 125 RVDEGYGLSTDALLQLKKNGIDLCISVDCGTLAYQPIEDAKAFGLDIIVVDHHLGTEKLP 184 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVAL 247 A A+VNPNRLD+ S +L A GV FL++V + + LR+ DL LLDLVAL Sbjct: 185 SAVAIVNPNRLDESSPYNNLAAVGVSFLLIVALNKSLREQGFFTNKKEPDLFDLLDLVAL 244 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 TVCDV+ + GLNRA V +GL V + N GL+ L + + I + LG+ IGP INA Sbjct: 245 GTVCDVMQITGLNRALVSQGLKVMSTRKNVGLRVLFDALGILEKPSVSRLGFSIGPCINA 304 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIGE++LG+RLL +DD +E +A+KL LN R+++E+ L +A A+ Sbjct: 305 GGRIGEASLGARLLSTDDDEEAHSIALKLIDLNNARKVLENEALLEATAQAEKSAQSGAN 364 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ WH GI+G++A+RLKE+F P+ IS +G G S RSI G DIG V Sbjct: 365 ---FIMISGNWHQGIIGIIASRLKEQFHLPTVVIS-LNNGIGKASCRSILGVDIGAAVLS 420 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A ++++GGGH+MAAG +++ L DFF + N + K D ++ A A Sbjct: 421 AKFINLIIEGGGHSMAAGFSIKEDKINDLHDFFTERFSNSIN----EKTLKADSIVTAKA 476 Query: 488 VNIAL 492 +N++L Sbjct: 477 INLSL 481 >gi|163759418|ref|ZP_02166503.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea phototrophica DFL-43] gi|162283015|gb|EDQ33301.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea phototrophica DFL-43] Length = 449 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 241/420 (57%), Positives = 312/420 (74%), Gaps = 1/420 (0%) Query: 2 NDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 ++AFLGVE S+SG +WV+ L Q G N+A++I Q +PDIVARVL R V++ A FL Sbjct: 30 TERAFLGVEQSLSGQKWVARLDQAGENKAISIAQTTGLPDIVARVLAGRGVAMGDAVAFL 89 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P+I+ LMPDP LTDCD+AA R+ AI +++ IFGDYDVDGAAS ALM RF +H + Sbjct: 90 DPTIKALMPDPSRLTDCDRAAERLALAIARRQRVAIFGDYDVDGAASSALMQRFFNHFGL 149 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + +YIPDRI +GYGPN + + I GA LI+TVDCGSTS++AL A +G+DV+VIDH Sbjct: 150 ESEIYIPDRIFEGYGPNAPAIAELIERGAGLIVTVDCGSTSHEALGEAAQRGVDVVVIDH 209 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLS 240 HQ+ +E PA+ALVNPNR DDLSG GHLCA GVVF+VL R+LRQ FDLLS Sbjct: 210 HQMAAELPPAHALVNPNREDDLSGLGHLCACGVVFMVLAGTLRLLRQQGDARVSGFDLLS 269 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 LDLVALATVCDVVPL GLNRA+VVKGL+ AR GNPGL AL +R ++ PI+ +LG++ Sbjct: 270 CLDLVALATVCDVVPLKGLNRAFVVKGLLAARGLGNPGLAALCQRAGVNGPISPYHLGFL 329 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 IGP INAGGRIG++ LGSRLL DD E + +A +L+ LN+ R+ +E+AMLE+A+A+ T Sbjct: 330 IGPRINAGGRIGDAALGSRLLALDDPAEAQAIAERLEELNRERQAIEAAMLEEADAEAAT 389 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + + +VIV WHPG+VGLLA+RLKE++ RP+FAI+F+ +GKG GSGRS+ G D Sbjct: 390 EMQSGEGPAVIVTARQGWHPGVVGLLASRLKERYRRPAFAIAFDGNGKGTGSGRSVPGLD 449 >gi|152991601|ref|YP_001357322.1| single-strand DNA-specific exonuclease [Sulfurovum sp. NBC37-1] gi|151423462|dbj|BAF70965.1| single-strand DNA-specific exonuclease [Sulfurovum sp. NBC37-1] Length = 527 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 151/535 (28%), Positives = 255/535 (47%), Gaps = 31/535 (5%) Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 + FL S++ L P P D D+A RIV+AI N EKI I GDYDVDG S LM F Sbjct: 20 EGFL--SLKDL-PHPSTFKDMDRATERIVRAIENREKISIIGDYDVDGVTSTTLMKLFFD 76 Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 IP+R DGYG + +++ + L ITVD G ++ A Q +GI++I Sbjct: 77 EIDYPVEWVIPNRFRDGYGLSANIIPRIAG--TDLAITVDNGISAVYAAQLCKEEGIELI 134 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237 + DHH + E AYA+++ + +C A + + ++ + L L + Sbjct: 135 ITDHHMLAPEVPEAYAIIDQKQEACSFPYEEVCGAQIAWYLIASLKNAL------ALKIN 188 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL 297 ++ ++L A+A + DV+PL +NRA V +G+ + P +KA +E +++E++ Sbjct: 189 MMPYMELAAIAIIADVMPLWHINRAMVERGIKALSQSSRPAIKAFMEHT-QKEELSSEDI 247 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 + P +NA GR+ +++ L S + + + +L N R+ E + +A K Sbjct: 248 AFSFAPILNAAGRMEDASHAVDFLTSTNIYDARVRLERLIGFNTERKATEEDITRKALQK 307 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 + + VI+V G+ WH G+VG++AAR+ +P +S E+G GSGRS Sbjct: 308 ADWEDE------VIIVAGEGWHEGVVGIVAARVARVREKPCIILSRNEEGILKGSGRSYG 361 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 D+ +V E L K GGH A GL++ +F + Q+ H Sbjct: 362 ECDLFGIVDGCRE--DLEKFGGHKAAIGLSLHETHFESFREKVQESYHQGNYVKEEIDPE 419 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFES 535 + G L+ S ++ AL +M++ PYG GNP P F + ++ + HL+ +F + Sbjct: 420 IV-GELHFSEISFALTEMMQKYEPYGHGNPRPKFISSDVEILQADTMGKEGEHLRFSF-A 477 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 Q+ + + F+ G+R+ +T + N++RG+ QL + Sbjct: 478 QEGIVMPGVKFKTKEHF-------ETGERVSITYTVNENHFRGNVTLQLMIDKIK 525 >gi|71276053|ref|ZP_00652334.1| RecJ exonuclease [Xylella fastidiosa Dixon] gi|71899475|ref|ZP_00681633.1| RecJ exonuclease [Xylella fastidiosa Ann-1] gi|71163136|gb|EAO12857.1| RecJ exonuclease [Xylella fastidiosa Dixon] gi|71730788|gb|EAO32861.1| RecJ exonuclease [Xylella fastidiosa Ann-1] Length = 613 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 272/582 (46%), Gaps = 39/582 (6%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ RV R + P + L+ P +L++ A + + I + +I++ Sbjct: 29 NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 84 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TV Sbjct: 85 VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 144 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH PA +VNPN DL L GV+F Sbjct: 145 DHGIACHAGIAAAKARGWKVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIF 204 Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 VL+ + L DL SLLDLVA+ TV D+VPL NR Sbjct: 205 YVLLALRARLYPAARAACEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 264 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 A V GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376 LL+++D +A L+ +N RR+++ M + AE + + Q + +V + Sbjct: 325 LLLTEDWTRARAIAAMLEEINVVRRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 383 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432 WHPG++GL+A+++K+K RP A++ E G + GS RSI G I ++ G Sbjct: 384 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 443 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGLT++ F+ +V + DG L A ++ Sbjct: 444 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 503 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551 L GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 504 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 562 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 563 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 597 >gi|149927856|ref|ZP_01916107.1| Single-stranded-DNA-specific exonuclease RecJ [Limnobacter sp. MED105] gi|149823478|gb|EDM82709.1| Single-stranded-DNA-specific exonuclease RecJ [Limnobacter sp. MED105] Length = 555 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 166/569 (29%), Positives = 270/569 (47%), Gaps = 35/569 (6%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++AR++ R V + L+P P L ++AA + A+ +I++ G Sbjct: 2 HPLMARLMAARGVDSQAEA---ETRLADLIP-PAQLKGIEQAAEILADALEAGARIVVVG 57 Query: 100 DYDVDGAASVALMMRFLSH----CSVN-------ANMYIPDRIVDGYGPNPSLMEKFINE 148 DYD DGA + A+ +R L + + +P+R GYG +P +++ + Sbjct: 58 DYDCDGATATAVGVRGLRMLLQSLGADEEAAKYHIDFLVPNRFEYGYGLSPEIVQLAAQQ 117 Query: 149 G-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 L++TVD G S + + A GI VIV DHH + A A+VNPN+ Sbjct: 118 FEPDLLVTVDNGIASVEGVNEANELGIGVIVTDHHLPGDQLPQALAVVNPNQPGCEFPSK 177 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + GV+F VL+ +LR+ + SLLDLVAL TV DVV L NR V Sbjct: 178 SIAGVGVMFYVLLATRAVLRERGVFDAATQPRIDSLLDLVALGTVADVVKLDANNRRLVA 237 Query: 266 KGLMVARR-QGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL R + PG+ AL TA ++G+ +GP +NA GR+ + +G R L++ Sbjct: 238 HGLQRIRAGRAQPGMLALFHEAGRDPRKATAADMGFALGPRLNAAGRLADMAIGIRTLLA 297 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 DD+ E LA +L +N+ R+ +E+ M A + + A+ IVV WH G++ Sbjct: 298 DDAGEAGALAAQLGKMNEERKRIEADMKRDALEDIEKFISQDEPAAGIVVAHSTWHQGVI 357 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV---EEGILVKGGGH 440 G+LA+R+KE+ RP+ A++ +DG GSGRS++G + ++ EG + K GGH Sbjct: 358 GILASRIKERLYRPTIALAPGDDGFWKGSGRSVQGVHLRDVLDLVCKRLPEGSMPKFGGH 417 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 AMAAGLT+ + F K ++ T V + DG + A + + D+LE+ Sbjct: 418 AMAAGLTIAEGAIEQFKIEFAKAILDLSDPSALTQVVETDGSIPADYIAASAADLLET-Q 476 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560 +G G P P+F ++ R++ AH + T +D +T A+ +R + Sbjct: 477 VWGQGFPAPLFCDE-FEVVEHRLLKNAHSKFTLR-RDGKTFVALRWRAVE---------A 525 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ + + + G Q+ V Sbjct: 526 LPAKVKLAYRFERDTFTGGDAVQIIVEHV 554 >gi|71897685|ref|ZP_00679930.1| RecJ exonuclease [Xylella fastidiosa Ann-1] gi|71732588|gb|EAO34641.1| RecJ exonuclease [Xylella fastidiosa Ann-1] Length = 613 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 176/582 (30%), Positives = 272/582 (46%), Gaps = 39/582 (6%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ RV R + P + L+ P +L++ A + + I +I++ Sbjct: 29 NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKAKGRILV 84 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TV Sbjct: 85 VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 144 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH PA +VNPN DL L GV+F Sbjct: 145 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPPADVIVNPNLPGDLFPSKTLAGVGVIF 204 Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 VL+ + L DL SLLDLVA+ TV D+VPL NR Sbjct: 205 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 264 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 A V GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376 LL+++D +A L+ +N RR+++ M + AE + + Q D + +V + Sbjct: 325 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSDGVLPMAVC-LFDP 383 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432 WHPG++GL+A+++K+K RP A++ E G + GS RSI G I ++ G Sbjct: 384 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 443 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGLT++ F+ +V + DG L A ++ Sbjct: 444 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 503 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551 L GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 504 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 562 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 563 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 597 >gi|188996979|ref|YP_001931230.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium sp. YO3AOP1] gi|188932046|gb|ACD66676.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium sp. YO3AOP1] Length = 574 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 167/598 (27%), Positives = 289/598 (48%), Gaps = 37/598 (6%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66 +E ISG++W+ L + +K+ +I A+VL NR D+++D++ P ++ Sbjct: 1 MEIGISGYQWIDLSKTNPAPDF--LVKKYG--EIFAQVLYNRRDLFDKDFSQDYIFPELK 56 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+ +P ++AA ++ + I I+++GDYD DG S +L++ F VNA Y Sbjct: 57 NLV-NPSYFHSLEEAAIKLAEHIKRKTPIVVYGDYDADGITSTSLLINFFKDLGVNAKYY 115 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP R +GYG N ++K G L I D G+ ++D L YA + G++V V+DHH+ Sbjct: 116 IPSRFSEGYGLNKEAIKKLSEHGKVL-IVCDSGTNAFDELFYAKSLGLEVFVLDHHEPSY 174 Query: 187 EEIPA--------YALVNPNRLDD---LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 ++NP D HL G+ F ++ + R+L D Sbjct: 175 LWQNYTPPFLSEKINIINPKFYSDEQINPLFKHLATVGIAFYLIAITRRLLNID------ 228 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 L LD+VA+ TV DVVP+ +NR V GL +Q G+K L+ + +T++ Sbjct: 229 IKLRDYLDIVAIGTVADVVPMSFINRVMVKIGLEELNKQKRAGIKELLNVARVKKELTSQ 288 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 ++G++IGP INA GR+ ++ +LL++ D +LA++L+ LN+ R+ + ++ +AE Sbjct: 289 DIGFIIGPRINASGRLADARNSVKLLVTRDQSRANVLAIELENLNKKRQKLTDNVISEAE 348 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 ++L Q +VIV+ + WH G+VG+ A RL EK+ PS +S +GK +GS RS Sbjct: 349 KELLKQ----DLKNVIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VNNGKAVGSARS 403 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + +I K + + K GGH+MAAG++++ L + + V Sbjct: 404 VSKVNIYKALDKC--RDLFDKFGGHSMAAGMSLKTNLIPELKERLNQAVEE-VAEEKPWA 460 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535 V +ID + S + + + P+G NP P F N K++ L + + Sbjct: 461 VKEIDMEVELSYWTTEKVKEIYNLQPFGEKNPIPKFLARNLKIEFFTNPAKNLLILNLKD 520 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ A +++ S G + + +NY++G + V D V+ Sbjct: 521 ENKNIYNAKSWKAKEL----LDKLSVGMIIDIVYTPEINYYKGFENLDFVVDDLKIVK 574 >gi|317490320|ref|ZP_07948806.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp. 1_3_56FAA] gi|325833463|ref|ZP_08165912.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp. HGA1] gi|316910610|gb|EFV32233.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp. 1_3_56FAA] gi|325485387|gb|EGC87856.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella sp. HGA1] Length = 1122 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 138/578 (23%), Positives = 243/578 (42%), Gaps = 23/578 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTD 77 + + + ++ +P +A LV R + A FL PS+ DP I+ Sbjct: 4 QFKIKAADPASVVRLERELGLPRFIAATLVARGIDNPAAVHRFLAPSLERDWLDPYIIPG 63 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 A + A+ + I++FGD+D+DG ++ ++ R L A +IP R +GY Sbjct: 64 LSDVADALEAAVKRGDHILVFGDFDLDGISATTVLTRGLRALGAQATPFIPLRFEEGYAL 123 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + + + + G I+TVDCG G+ + + DHH+ + +P Sbjct: 124 SQAAITRACSFGPDFIVTVDCGIACKAEAAAVVEAGLGLAITDHHEPVDLVPEGVPVADP 183 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D L GV ++ ++ L Q D L TV D++P+ Sbjct: 184 KC-DANCPSSILAGVGVALKLVQVLGGRLGQ------PHLWRDFTDFATLGTVADLMPMR 236 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316 NRA V G+ P + AL+ P++A NL + + P +NA GR+G++ L Sbjct: 237 DENRALVSDGIARMNAAPRPCIAALLATSGAADKPVSATNLSFSVIPRLNAAGRMGDAQL 296 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL++DD +E LA KL+ +N RR +E+ + E A+A+ +VV G+ Sbjct: 297 ALDLLMTDDFEEANRLATKLESVNDQRRAIEAELSEIAKAQAAEIYHGQ---RALVVSGE 353 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G+ G++A+RL +G PS + + + GSGRS+ + V A +L + Sbjct: 354 SWHEGVKGIVASRLVNTYGVPSLLFT-IDGDEARGSGRSVGQVSLFSAVESA--SDLLTR 410 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A G+T+ + +P P+ +ID ++ + + + L Sbjct: 411 FGGHDAAVGVTLPADKLPEFERRLCAYMDA-LPEGAFHPLVEIDSCVSLDELTLDNVAQL 469 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 + P+G +P PV+ + L + R V H + T+ I F Sbjct: 470 DKLAPFGQEHPVPVYLARDVMLANCRAVGAEKNHFSCSLSD-GRATVSGIMFHCSDIE-- 526 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++ + ++ WRG K + + +P Sbjct: 527 --SLMRTDSVVNAAFEVQIDEWRGRKSVKAMLQSLAPA 562 >gi|257792452|ref|YP_003183058.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella lenta DSM 2243] gi|257476349|gb|ACV56669.1| single-stranded-DNA-specific exonuclease RecJ [Eggerthella lenta DSM 2243] Length = 1122 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 138/578 (23%), Positives = 243/578 (42%), Gaps = 23/578 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTD 77 + + + ++ +P +A LV R + A FL PS+ DP I+ Sbjct: 4 QFKIKAADPASVVRLERELGLPRFIAATLVARGIDNPAAVHRFLAPSLERDWLDPYIIPG 63 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 A + A+ + I++FGD+D+DG ++ ++ R L A +IP R +GY Sbjct: 64 LSDVADALEAAVKRGDHILVFGDFDLDGISATTVLTRGLRALGAQATPFIPLRFEEGYAL 123 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + + + + G I+TVDCG G+ + + DHH+ + +P Sbjct: 124 SQAAITRACSFGPDFIVTVDCGIACKAEAAAVVEAGLGLAITDHHEPVDLVPEGVPVADP 183 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D L GV ++ ++ L Q D L TV D++P+ Sbjct: 184 KC-DANCPSSILAGVGVALKLVQVLGGRLGQ------PHLWRDFTDFATLGTVADLMPMR 236 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNL 316 NRA V G+ P + AL+ P++A NL + + P +NA GR+G++ L Sbjct: 237 DENRALVSDGIARMNAAPRPCIAALLATSGAADKPVSATNLSFSVIPRLNAAGRMGDAQL 296 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL++DD +E LA KL+ +N RR +E+ + E A+A+ +VV G+ Sbjct: 297 ALDLLMTDDFEEANRLATKLESVNDQRRAIEAELSEIAKAQAAEIYHGQ---RALVVSGE 353 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH G+ G++A+RL +G PS + + + GSGRS+ + V A +L + Sbjct: 354 SWHEGVKGIVASRLVNTYGVPSLLFT-IDGDEARGSGRSVGQVSLFSAVESA--SDLLTR 410 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH A G+T+ + +P P+ +ID ++ + + + L Sbjct: 411 FGGHDAAVGVTLPADKLPEFERRLCAYMDA-LPEGAFHPLVEIDSCVSLDELTLDNVAQL 469 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 + P+G +P PV+ + L + R V H + T+ I F Sbjct: 470 DKLAPFGQEHPVPVYLARDVMLANCRAVGAEKNHFSCSLSD-GRATVSGIMFHCSDIE-- 526 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++ + ++ WRG K + + +P Sbjct: 527 --SLMRTDSVVNAAFEVQIDEWRGRKSVKAMLQSLAPA 562 >gi|160893484|ref|ZP_02074269.1| hypothetical protein CLOL250_01035 [Clostridium sp. L2-50] gi|156864879|gb|EDO58310.1| hypothetical protein CLOL250_01035 [Clostridium sp. L2-50] Length = 625 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 165/624 (26%), Positives = 290/624 (46%), Gaps = 60/624 (9%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILT 76 W + I ++ I + RV+ NR+ ++ + +LN S+ L DP ++ Sbjct: 15 WTVYGKRADF---FGIGERFHIDPVTVRVIRNRDVITDEDIDTYLNGSLDRLH-DPGLMK 70 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH---------CSVNANMYI 127 + +K +++ I N ++I I DYDVDG +S ++ + L + I Sbjct: 71 NMEKGCNLMLEEIRNKKRIRIISDYDVDGVSSNYILYKGLQRVWEHENGISAGDKIDYDI 130 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P RI DGYG N +++ + IIT D G ++DA++ A G+ VIV DHH + + Sbjct: 131 PHRIYDGYGINIRMVDAAAADQISTIITCDNGIAAFDAVRKAKEYGMRVIVTDHHDIPYD 190 Query: 188 EIPA----------YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237 A+++ + LC AGV + + L+YR+ + Sbjct: 191 TDEKNIRIYKVPEADAVIDHKQPGCEYPCKELCGAGVAYKFIQLLYRMCGI-----PETE 245 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAEN 296 + ++++ +ATVCDV+ L+ NR V + L N GLKALI ++A + Sbjct: 246 CEAFIEILGIATVCDVMNLVDENRIIVREALRRLSDSSNYGLKALITNSGRDGKKLSAFD 305 Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356 LG++IGP INA GR+G++ L+ DS + A++L +N R+ M + A Sbjct: 306 LGFIIGPCINAAGRLGDAKTSLEFLLETDSYKANERAIELLNINNARKDMTEQGTKTAIE 365 Query: 357 KVLTQCDDIQQ-----------ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-E 404 + + V+V+ + H +VG++A R+KE++ RP + E Sbjct: 366 LLEKSDRLLMGAVPETGVAALSDKVLVMYIPKLHESLVGIIAGRIKERYYRPVLLFTDGE 425 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 E+G GSGRSIEG+++ ++ K GGH MAAG ++E+ N RL + Sbjct: 426 EEGIIKGSGRSIEGYNMYDEINKC--SDYFTKFGGHEMAAGFSMEKRNLARLREKMNTNC 483 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + + TP +ID + V+I+L + LE P+G GN PVFA ++S R++ Sbjct: 484 --TLDEKLLTPKLRIDVPMPLDYVSISLTEELELLEPFGKGNEKPVFAQSGVYVKSARIM 541 Query: 525 NLAH--LQMTFESQDSETLQAIAF----------RVYGTPLGEFLMQSRGKRM--HVTGH 570 L++TF ++ T++ I+F + +G + +++ + + + Sbjct: 542 GKRQNVLRVTFLMENGGTIEGISFAPEVFISNIKQWFGANECDKILKGMPGHVVLDIAYY 601 Query: 571 LCVNYWRGSKRCQLRVLDASPVEG 594 +N + G + Q+R+L+ EG Sbjct: 602 PDINEFAGRRTLQIRLLEYRKHEG 625 >gi|170729663|ref|YP_001775096.1| single-stranded DNA exonuclease [Xylella fastidiosa M12] gi|167964456|gb|ACA11466.1| single-stranded DNA exonuclease [Xylella fastidiosa M12] Length = 602 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 272/582 (46%), Gaps = 39/582 (6%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ RV R + P + L+ P +L++ A + + I + +I++ Sbjct: 18 NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TV Sbjct: 74 VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH PA +VNPN DL L GV+F Sbjct: 134 DHGIACHAGIAAAKARGWKVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIF 193 Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 VL+ + L DL SLLDLVA+ TV D+VPL NR Sbjct: 194 YVLLALRARLYPAARAACEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 253 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 A V GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG Sbjct: 254 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 313 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376 LL+++D +A L+ +N RR+++ M + AE + + Q + +V + Sbjct: 314 LLLTEDWTRARAIAAMLEEINVVRRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 372 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432 WHPG++GL+A+++K+K RP A++ E G + GS RSI G I ++ G Sbjct: 373 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 432 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGLT++ F+ +V + DG L A ++ Sbjct: 433 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 492 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIAFRVYGT 551 L GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 493 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRYDALNAIYFNGWQG 551 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 552 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 586 >gi|255994784|ref|ZP_05427919.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium saphenum ATCC 49989] gi|255993497|gb|EEU03586.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium saphenum ATCC 49989] Length = 542 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 160/555 (28%), Positives = 267/555 (48%), Gaps = 22/555 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 + +R+L R I ++F +P+ +L P L D+A RI +A N+EKI I+G Sbjct: 4 SKVFSRILSLRKDIIGDPEEFFSPTPQLTHPA-DELYSIDEAVSRIAKACENNEKITIYG 62 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYD DG S +M FL + YIP R+ +GYG + + K G LII+VDCG Sbjct: 63 DYDADGVTSTGIMFMFLKAAGADVEYYIPSRMDEGYGISIEAINKIKETGTTLIISVDCG 122 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 S SY+ +YA + G+DV++ DHH V VNP + GV F VL Sbjct: 123 SNSYEEAEYAESIGMDVVITDHHTVDKHHYEGIN-VNPKHPKSSCAFPQIAGVGVAFKVL 181 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + R L D +V LL LDLVA+ T+ D++P+ NR Y+ GL+ + N GL Sbjct: 182 QQLQRKLNLDKRV-----LLETLDLVAIGTIADIMPVYDENRTYIKYGLLKMNKNPNLGL 236 Query: 280 KALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 + L+ + I I ++++ + I P INA GR+ +++G L I+DD + LA L Sbjct: 237 RCLLRELGIADREIKSDDVSFRIAPCINAAGRLENASIGVELFITDDEKRAMTLARDLVN 296 Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 LN R+ ++ A +++++ K++ D ++ H G+ G+++ +LKE FG+ + Sbjct: 297 LNTKRKELQVAEVKRSKEKMVETGADKN----AILLTLDIHSGVAGIVSGKLKEDFGKVA 352 Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 + DG SGRS + D+ ++ + + V GGH+ A G T+++ + + Sbjct: 353 IVMVDTGDGYLKASGRSPDAIDLYQL--LLKFQDLYVNFGGHSAACGFTIKKSDENVFRE 410 Query: 459 FFQKFAHNIVPAL--ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516 F + ++V A +K D ++ S +N+ L L+ PYG N + F + Sbjct: 411 RFYRAVDDMVEADPGSLKKNYKYDLKVDVSDMNLELASELKMLEPYGKLNEDIRFLIEDV 470 Query: 517 KLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 ++ + H++ + + TL+ + F + Q K + + G N Sbjct: 471 VPFNMIYLGRDSRHIKFFLKQARN-TLECMCFNAAAEVINMIEEQ---KHISIIGKFGAN 526 Query: 575 YWRGSKRCQLRVLDA 589 +RG Q+ V D Sbjct: 527 EYRGKLSPQITVSDI 541 >gi|282600883|ref|ZP_05980017.2| single-stranded-DNA-specific exonuclease RecJ [Subdoligranulum variabile DSM 15176] gi|282571257|gb|EFB76792.1| single-stranded-DNA-specific exonuclease RecJ [Subdoligranulum variabile DSM 15176] Length = 684 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 162/581 (27%), Positives = 262/581 (45%), Gaps = 31/581 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W + G LA ++ RVL R + + A+ L P+ + DP +L Sbjct: 14 WQIRTAEPGAEDTLAAA---GCGVLLRRVLAARGIRDTETARQMLEPAAD--LSDPFLLR 68 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA RI QAI E I+I+GDYDVDG ++ AL+ LS + +P R GYG Sbjct: 69 DMDKAVARIGQAIEAEEPIVIYGDYDVDGISATALLYECLSSQGAHVRCKLPTRGS-GYG 127 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 +E +G L++TVD G ++ + A G+D+++ DHH A A+V+ Sbjct: 128 LTRPALEALAQKGFTLVVTVDNGISAVEEAACAKELGLDLVITDHHLPGDVLPEAVAVVD 187 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R DD S +LC AGV F + + L + VAL TV DV+PL Sbjct: 188 PKRADDESPFKNLCGAGVAFKLCAAL-------EGCNPAELLEMYGEFVALGTVADVMPL 240 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGESN 315 +G NR V +GL + + PGL AL+E + + + Y + P +NA GR+ ++ Sbjct: 241 VGENRVLVREGLALLQDTMRPGLHALLESGGYAGKPVTTDTVSYGLAPRLNAAGRMDNAS 300 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + +LL+ D ++ +A +L +N R+ E A+ A + ++ V+VV G Sbjct: 301 VALKLLLCGDEEQATGIAARLAEINTERQQTEQAVFASACGVLEADPARLRDR-VLVVAG 359 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 + WHPG++G++AARL E++ RP IS + G+G GSGR+ + FD+ ++ E L Sbjct: 360 EDWHPGVIGIVAARLMERYSRPVIVISLHD-GEGRGSGRAPDSFDLHSALAACAE--NLT 416 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 + GGHA AAG+ +E ++A + ++D V+ + + + Sbjct: 417 RFGGHAAAAGIEIEEEKLPVFRQAINEWAARHAARPAPA-MLQLDAVVKLEELTLENVRD 475 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G NP PV + + + + H ++ + A F V Sbjct: 476 LTRLAPFGRENPTPVLLVRDAVIDGVWAMGAEGRHTRVRLRQGNHTMF-ASLFGVT---- 530 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSK--RCQLRVLDASPV 592 + G + L V+ + G + P Sbjct: 531 PQKFAYPVGTAVEAA--LEVSIFTGRSGPMVSAHLKGIRPA 569 >gi|167630584|ref|YP_001681083.1| single-stranded-DNA-specific exonuclease recj [Heliobacterium modesticaldum Ice1] gi|167593324|gb|ABZ85072.1| single-stranded-DNA-specific exonuclease recj [Heliobacterium modesticaldum Ice1] Length = 577 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 171/579 (29%), Positives = 274/579 (47%), Gaps = 35/579 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW+ Q+ I+ + A +L R + A+ F+ I M DP ++ Sbjct: 2 RWIFPSTQQ-------ISSYPGLTPFQAALLARRGIGPAEAERFIRSGIED-MYDPRLMK 53 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 AA I I I ++GDYD DG AL++ L+ + + YI R V+G+G Sbjct: 54 GATAAAAIISDTIDRQVPITVYGDYDCDGVTGTALLVESLTKLGASVDWYINSRFVEGFG 113 Query: 137 PNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 +P +E+ +LII+VD G ++ DA++ A G+ V++ DHH+ E PA +V Sbjct: 114 MHPLGIEEIARRGTPRLIISVDNGISAGDAVRRARELGMQVVITDHHEPSEELPPADVIV 173 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP + + HL GV F V+ ++++ + ++L LDLVA+ TV DV+P Sbjct: 174 NPKQAGCAYPEKHLAGVGVAFKVMQILFQAAGR------PREILRSLDLVAIGTVADVMP 227 Query: 256 LIGLNRAYVVKGLMVAR--RQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRI- 311 + G NR ++ GL + + GL+A+ + N+ + A +LG++ GP +NA GRI Sbjct: 228 VTGENRIFIKNGLKLINWGNRTRIGLQAIKDAANLKGDVNAHYHLGFIFGPMLNATGRID 287 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G LL++ D LA +L +N+ R+ + E A + T+ I Sbjct: 288 GVPAAAVELLLTADRHRAAGLAAQLRKVNEERQELTRRQTEVALTQAQTKMQGTGAPGFI 347 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV +H GIVGL+A+RLKE + RP A++ E G GS RS++GF + + + Sbjct: 348 VVYNPAFHEGIVGLIASRLKEVYHRPVLALTDSHEPGVLKGSVRSVKGFSVKEHLI-DGC 406 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L+KGGGH MAAG ++ + N LC H PA + P ID VL ++ Sbjct: 407 ADLLLKGGGHEMAAGCSLIKENLAALCCRLDAAVHQA-PADLFVPSVGIDYVLEPKEMDR 465 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRV 548 L+ +E PYGAG P P F + +R V HL+++ + + AI F Sbjct: 466 GLVTQIEEFAPYGAGFPRPNFLLAPFWPEQVRFVGRDGNHLRLS-----GQGVIAIGFNQ 520 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 F + + + G +N + + Q R+ Sbjct: 521 AEA----FRKANPQGTLALLGLPEINDY--DRSVQFRLR 553 >gi|254993583|ref|ZP_05275773.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL J2-064] Length = 492 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 156/509 (30%), Positives = 255/509 (50%), Gaps = 23/509 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI +AI +E+I+++GDYD DG S+A++M+ L H NA YIP+R Sbjct: 61 FLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGANAEFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREVMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P L GV + + + L ++ LLDLVA+ TV D Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVTYKLSHAL---LGEEP--------KELLDLVAVGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 +V L NR V GL R N GL L ++ ++ T E +G+ + P +NA GR+ Sbjct: 230 LVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G ++ + LL+++D +E LA ++D N+ R+ + + A + + +V+ Sbjct: 290 GPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAKET---LGNVL 346 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 VV G+ W+ GI+G++A++L + RP+ + + G GSGRS++ F + + Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LXKH 404 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++ Sbjct: 405 RDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINIADVSV 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 A I LE P+G NP P+F N L+ Sbjct: 464 AFIAQLEKLAPFGMDNPKPIFLLENMHLK 492 >gi|290890596|ref|ZP_06553667.1| hypothetical protein AWRIB429_1057 [Oenococcus oeni AWRIB429] gi|290479724|gb|EFD88377.1| hypothetical protein AWRIB429_1057 [Oenococcus oeni AWRIB429] Length = 622 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 163/580 (28%), Positives = 282/580 (48%), Gaps = 37/580 (6%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 + + W Q I Q ++ + + VL R S+ +DF + + L+ DP Sbjct: 4 NQYFWFKR--QTDKQFIQKIEQHFSLDRLTSTVLAGRFSSVPLIEDFFSSDLNKLV-DPS 60 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L + +R++ AI N EKI I+GDYD DG S +++++ L + +IP+R D Sbjct: 61 RLDQIELLKKRLISAIDNQEKITIYGDYDADGITSTSILLKTLQILGARVDYFIPNRFRD 120 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYGPN + ++ I+ G +LI VD G + +DA+ A +DV++ DHHQ+ + A A Sbjct: 121 GYGPNKFVYQQLIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAKA 180 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P+ DD +L AAG+ F V + L LVA+ + DV Sbjct: 181 IIHPDLSDD-YPFKNLSAAGIAFKVSKYLL----------GTQKARQFLPLVAIGEIADV 229 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIG 312 +PLI NR + G+ + + N GL+ +I+R ++ +TA+++ + I P +N+ GR+ Sbjct: 230 MPLINENRILIQTGIDLIKSGENKGLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMA 289 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +S +G LL +DDS ++ + +++ LN+ R+ + A +V Q+ ++I+ Sbjct: 290 DSGIGVELLTTDDSDKVSEITKQVEHLNKQRQKEADKIYRIASRQV-----SPQENNIII 344 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V G+ WH GI+G++A RL FGRP+ S ++G GS RS FD+ K++ A Sbjct: 345 VSGENWHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKVLDRA--RD 401 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGH AAGL+++ + RL + ID V+ A ++I Sbjct: 402 LYISFGGHKQAAGLSLKASDLDRLDKILNAD-----DYHFSVGRLAIDAVIKAGDLSIDS 456 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 L P+G GNP P+F + +L ++R++ H ++ + L F Sbjct: 457 FKQLSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSGDIL---FFNRPD 513 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G+R+ + G L +N W+ + Q+ D Sbjct: 514 L----IGKLQLGERLSIVGTLSLNEWKHRQSLQIIGKDIR 549 >gi|307579426|gb|ADN63395.1| single-stranded-DNA-specific exonuclease RecJ [Xylella fastidiosa subsp. fastidiosa GB514] Length = 604 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 271/582 (46%), Gaps = 39/582 (6%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ RV R + P + L+ P +L++ A + + I + +I++ Sbjct: 20 NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TV Sbjct: 76 VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 135 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH A +VNPN DL L GV+F Sbjct: 136 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIF 195 Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 VL+ + L DL SLLDLVA+ TV D+VPL NR Sbjct: 196 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 255 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 A V GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG Sbjct: 256 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 315 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376 LL+++D +A L+ +N RR+++ M + AE + + Q + +V + Sbjct: 316 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 374 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432 WHPG++GL+A+++K+K RP A++ E G + GS RSI G I ++ G Sbjct: 375 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 434 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGLT++ F+ +V + DG L A ++ Sbjct: 435 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 494 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551 L GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 495 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 553 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 554 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 588 >gi|182680958|ref|YP_001829118.1| single-stranded-DNA-specific exonuclease RecJ [Xylella fastidiosa M23] gi|182631068|gb|ACB91844.1| single-stranded-DNA-specific exonuclease RecJ [Xylella fastidiosa M23] Length = 602 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 271/582 (46%), Gaps = 39/582 (6%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ RV R + P + L+ P +L++ A + + I + +I++ Sbjct: 18 NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 73 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TV Sbjct: 74 VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 133 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH A +VNPN DL L GV+F Sbjct: 134 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIF 193 Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 VL+ + L DL SLLDLVA+ TV D+VPL NR Sbjct: 194 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 253 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 A V GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG Sbjct: 254 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 313 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376 LL+++D +A L+ +N RR+++ M + AE + + Q + +V + Sbjct: 314 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 372 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432 WHPG++GL+A+++K+K RP A++ E G + GS RSI G I ++ G Sbjct: 373 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 432 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGLT++ F+ +V + DG L A ++ Sbjct: 433 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 492 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551 L GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 493 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 551 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 552 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 586 >gi|28198319|ref|NP_778633.1| single-stranded DNA exonuclease [Xylella fastidiosa Temecula1] gi|28056389|gb|AAO28282.1| single-stranded DNA exonuclease [Xylella fastidiosa Temecula1] Length = 613 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 271/582 (46%), Gaps = 39/582 (6%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ RV R + P + L+ P +L++ A + + I + +I++ Sbjct: 29 NVPPLLRRVYTARGCADPVTAQ---PCLAQLL-SPAMLSNMQAATVLLTEVIKANGRILV 84 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TV Sbjct: 85 VGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTV 144 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G + + A +G V+V DHH A +VNPN DL L GV+F Sbjct: 145 DHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIF 204 Query: 217 LVLVLIYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 VL+ + L DL SLLDLVA+ TV D+VPL NR Sbjct: 205 YVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNR 264 Query: 262 AYVVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 A V GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGD 376 LL+++D +A L+ +N RR+++ M + AE + + Q + +V + Sbjct: 325 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDP 383 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEG 432 WHPG++GL+A+++K+K RP A++ E G + GS RSI G I ++ G Sbjct: 384 DWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPG 443 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++ K GGHAMAAGLT++ F+ +V + DG L A ++ Sbjct: 444 MIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALH 503 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGT 551 L GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 504 ARALRLGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRYSGRHDALNAIYFNGWQG 562 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 563 D-------PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 597 >gi|261416309|ref|YP_003249992.1| single-stranded-DNA-specific exonuclease RecJ [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372765|gb|ACX75510.1| single-stranded-DNA-specific exonuclease RecJ [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327274|gb|ADL26475.1| single-stranded-DNA-specific exonuclease RecJ [Fibrobacter succinogenes subsp. succinogenes S85] Length = 570 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 157/581 (27%), Positives = 263/581 (45%), Gaps = 36/581 (6%) Query: 30 ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 A ++ IP VAR LV+R + ++ A L S + DP ++ DKA I+ Sbjct: 6 ASTLSSTLKIPHAVARFLVSRGIKTVSDAYHML-CSSESDVHDPFLMMGMDKAVEWILAV 64 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 E++ IFGDYD+DG SV L+ R L + + +P+R DGYG + S +++ Sbjct: 65 RERGERVFIFGDYDLDGMTSVTLLTRCLKTVGIESEWRLPNRFGDGYGLSVSAVDEMYEA 124 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AYALVNPNRLDDLSGQG 207 GA+ +ITVD G T+ + +A G+ V+V+DHHQ + +P + L++P++ D Sbjct: 125 GARNLITVDTGITANVEIAHAKELGMAVMVMDHHQPSGDGLPVSDVLLDPHQEGDNYPNP 184 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 LC GV + + ++ L V LDLVAL T+ D+V + NR + G Sbjct: 185 ELCGVGVSYKFICALFSRLGIKAPV-------EYLDLVALGTLADLVQMTPENRYFTRTG 237 Query: 268 LMVARRQGNPGLKALI-ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 L + PG++ + + S + ++ Y + P +NA GR+ + +LL+ ++ Sbjct: 238 LESLKNSRWPGVQEMYTSLMKPHSCVGGIDVMYKLAPLLNAPGRMERPDPALKLLLCENK 297 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 E L +L N R+ E+ + E A +V D +VIVV G+ WH G++G++ Sbjct: 298 GEAGKLLEELKDWNARRKQKEAEITEMAMEQVKALYGDTI-PTVIVVAGENWHVGVIGIV 356 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 AA+L ++F RPS +S G S R++ GF+ K + + GGHA AAG Sbjct: 357 AAKLAQEFHRPSAVLSIIN-GMAHASARAVPGFNWHKA--LFDSRELFDRWGGHANAAGF 413 Query: 447 TVERVNFGRLCDFFQKFAHNI---VPALITTPVFKIDGVLNASAVNIAL----------- 492 ++E L + A + + T + D + + + Sbjct: 414 SLEAGKIEELRGRLLQSAKDQGYTGEVINTDESYPYDIKIALRELTVETRVPTGRYPIRE 473 Query: 493 ---IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 ++ ++ P+G P P F N + +R + HLQM S AIAF + Sbjct: 474 RSILEFIDLLEPFGGNFPYPAFRAENVTVHRVRELRGGHLQMEISQAGSAVFPAIAFGLR 533 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + R + + V NY+ +K QL + Sbjct: 534 KSKA----LLGRSRPVTVVFEPIWNYYNNTKTVQLCIKSIE 570 >gi|256959099|ref|ZP_05563270.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis DS5] gi|257079130|ref|ZP_05573491.1| single strand DNA-specific exonuclease [Enterococcus faecalis JH1] gi|256949595|gb|EEU66227.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis DS5] gi|256987160|gb|EEU74462.1| single strand DNA-specific exonuclease [Enterococcus faecalis JH1] Length = 703 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G + ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVSGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQGTS---DVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|227824351|ref|ZP_03989183.1| exonuclease recJ [Acidaminococcus sp. D21] gi|226904850|gb|EEH90768.1| exonuclease recJ [Acidaminococcus sp. D21] Length = 778 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 177/571 (30%), Positives = 277/571 (48%), Gaps = 23/571 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 L + + ++ +L RN++ + + FL+ S DP L ++A Sbjct: 12 PLDPDLLETGKALGLSPVLMGILKRRNLTDPEAIRTFLDGSPEPFH-DPYGLLHMERAVT 70 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVDGYGPNPSLM 142 RI +A+ EKI I+GDYDVDG ++ +L FL + A +YIP R +GYG N + Sbjct: 71 RICEALSKEEKITIYGDYDVDGTSASSLFFLFLTKNLGAKAAVYIPRRDTEGYGLNLEAL 130 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 EK G+ L+ITVD G + D ++ A G+DVI+ DHH E PAY +VNPN+ D Sbjct: 131 EKIYAGGSTLVITVDTGISGADVIKKAPT-GLDVIITDHHLAPQELPPAYTVVNPNQPGD 189 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 + +C GV F + +++ P + L++L A+ATV DVVPL+G NR Sbjct: 190 SYPEKGICGCGVAFKLCQALWQHF-----HPESALWTDLIELAAVATVADVVPLVGENRE 244 Query: 263 YVVKGLMVARRQGNPGLKALIE-RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL GL+ALI+ SPIT++ +G+ IGP INA GR+ ++ L +LL Sbjct: 245 IVRRGLKKIANTSLVGLRALIQSATREGSPITSDTIGFGIGPRINAAGRLDDAMLAVKLL 304 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 I+ DS+E + L+ +L+ LN R+ + + E+AEA + IV+ + WHPG Sbjct: 305 ITSDSEEAKTLSRELNDLNAKRQEISQRIFEEAEAMLTA--SGKVPTWGIVLAKEGWHPG 362 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 ++G++A+RL EK+ P+ +S ++ G GS RSI + + L++ GGHA Sbjct: 363 VIGIVASRLTEKYHEPTILMSIKD-GIAKGSCRSIPPVHLYHALEACRL--ALIQFGGHA 419 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA-SAVNIALIDMLESAG 500 AAGLT+E L F + + I P + D + AV ++ LE Sbjct: 420 QAAGLTMEADKVDELRHLFTETVKTALHGEIYEPEVEPDYFIPEGEAVTEKIVHELERLQ 479 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G NP P+ F + +R + HL++ S + + + Sbjct: 480 PFGQNNPAPILGFERAVITGVRTMGKDGSHLRLDLSS-GGYGYKGLLW----QEGPRSHY 534 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 G+ V +N +RG L V Sbjct: 535 FYEGEEAAVAFVPRLNTFRGVTTVDLEVKAV 565 >gi|257082433|ref|ZP_05576794.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis E1Sol] gi|256990463|gb|EEU77765.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis E1Sol] Length = 703 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 163/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYALV+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYALVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S A ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|257416210|ref|ZP_05593204.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis AR01/DG] gi|257158038|gb|EEU87998.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis ARO1/DG] Length = 703 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R + GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFLHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S A ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|237756012|ref|ZP_04584595.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium yellowstonense SS-5] gi|237691828|gb|EEP60853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium yellowstonense SS-5] Length = 574 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 167/598 (27%), Positives = 290/598 (48%), Gaps = 37/598 (6%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66 +E ISG++W+ L + +K+ +I A+VL NR D+++D++ P ++ Sbjct: 1 MEIGISGYQWIDLSKTNPAPDF--LVKKYG--EIFAQVLYNRRDLFDKDFSQDYIFPELK 56 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+ +P ++ A ++V+ I I+++GDYD DG S +L++ F VNA Y Sbjct: 57 NLV-NPSYFHSLEEVALKLVEHIKRKTPIIVYGDYDADGITSTSLLINFFKDLGVNAKYY 115 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP R +GYG N ++K G L I D G+ ++D L YA + G++V V+DHH+ Sbjct: 116 IPSRFSEGYGLNKEAIKKLSEHGKVL-IVCDSGTNAFDELFYAKSLGLEVFVLDHHEPSH 174 Query: 187 EEIPA--------YALVNPNRLDD---LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 ++NP D HL G+ F ++ +I R+L D Sbjct: 175 LWQNYTPPFLSEKINIINPKFYSDKLINPLFKHLATVGIAFYLIAIIRRLLNID------ 228 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 L LD+VA+ TV DVVP+ +NR V GL +Q G+K L+ + +T++ Sbjct: 229 IKLRDYLDIVAIGTVADVVPMSFINRVMVKIGLEELNKQKRAGIKELLNVARVKKELTSQ 288 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 ++G++IGP INA GR+ ++ +LLI+ D + +LA++L+ LN+ R+ + ++ +AE Sbjct: 289 DIGFIIGPRINASGRLADARNSVKLLITRDQSKANVLAIELENLNKKRQKLTDNVISEAE 348 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 ++ Q +VIV+ + WH G+VG+ A RL EK+ PS +S +GK +GS RS Sbjct: 349 KELQNQ----DLKNVIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VSNGKAVGSARS 403 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + +I K + + K GGH+MAAG++++ L + + V Sbjct: 404 VSKVNIYKALDKC--RDLFDKFGGHSMAAGMSLKTSLIAELKERLNQAVEE-VAEEKPWA 460 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535 V +ID + S + + + P+G NP P F N K++ L + + Sbjct: 461 VKEIDMEVELSYWTTEKVKEIYTLQPFGEKNPIPKFLARNLKIEFFTNPAKNLLILNLKD 520 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 ++ A +++ S G + + +NY++G + + D V+ Sbjct: 521 ENKNIFNAKSWKAKEL----LDKLSVGMIIDIVYTPEINYYKGLENLDFVIDDLKIVK 574 >gi|225848247|ref|YP_002728410.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium azorense Az-Fu1] gi|225644317|gb|ACN99367.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium azorense Az-Fu1] Length = 574 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 159/595 (26%), Positives = 284/595 (47%), Gaps = 37/595 (6%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66 ++ +SG++WV L + + ++ ++ A+VL NR D++ D++ P +R Sbjct: 1 MDIGLSGYQWVLLSQTNPAPQ--HLKERFG--EVFAQVLYNRKDLFDKDFSDDYIIPQLR 56 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+ +P ++ A ++V AI ++I+I+GDYD DG S AL++ F V Y Sbjct: 57 NLI-NPSYFYSLEEVAIKLVDAIKKQKRIVIYGDYDADGITSTALLVNFFRDIKVPVKYY 115 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP R +GYG N + K I+ A ++I VD G+ + + L YA + G++V V+DHH+ Sbjct: 116 IPSRFTEGYGLNKEAI-KSISTEADILIVVDSGTNAIEELLYAKSLGLEVFVLDHHEPSD 174 Query: 187 EEIPA--------YALVNPNRLDDL---SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 +VNP DD HL G+ F ++ LI R+L + Sbjct: 175 FWTDKNPLSFDSSINIVNPKFYDDEKISPMFKHLATVGIAFYLISLIKRLLNIE------ 228 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 L S LD+VA+ TV DVVP+ +NR V G+ ++ G+ L E +I I + Sbjct: 229 IKLRSYLDIVAIGTVADVVPMSFINRVMVKTGIEEINKKHRVGITKLTEAASIQRDINTQ 288 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 ++G+MIGP INA GR+ ++ +LLI+ D +LA +L+ LN+ R+ + ++++AE Sbjct: 289 DIGFMIGPRINAAGRLADARKSVKLLITKDETRATILANELENLNRKRQKITDNVIKEAE 348 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 ++ + + IV+ + WH G++G++A +L EK+ P+ +S E+GK +GS RS Sbjct: 349 ----SELNKYPFENAIVLGRENWHSGVIGIVAGKLAEKYKIPTVILS-IENGKAVGSARS 403 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + +I K + + + K GGH+ AAG + + L + V Sbjct: 404 VAKVNIYKALDKC--KDLFEKFGGHSAAAGFSTKSDKIHDLRYRLNRSVEE-VAEEKPWA 460 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535 V ++D + S + I + P+G NP P F + ++ V + + Sbjct: 461 VKEVDMEVPLSYWDKGKILQIYQLAPFGEKNPYPKFIDRHLRVDYFSVYGKNLVILDLRD 520 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + ++ S G + + ++ ++G + + V D Sbjct: 521 RNKKVFTVKWWKGQDI----INQISVGSIIDIVYIPEISNYKGIESVEFIVDDIR 571 >gi|302335522|ref|YP_003800729.1| exonuclease RecJ [Olsenella uli DSM 7084] gi|301319362|gb|ADK67849.1| exonuclease RecJ [Olsenella uli DSM 7084] Length = 1117 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 269/582 (46%), Gaps = 26/582 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 + RW L R + + + +VAR L R V +D A+ FL PS+ D Sbjct: 5 LGSRRWELLPQDAAAERC--LREGCGVSSLVARTLAARGVKDVDEARRFLTPSLERDWAD 62 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 PL++ + AA+R+ A+ E I +FGD+DVDG ++ L+ L + + YIP R Sbjct: 63 PLLIPGMEGAAQRVGAALDRHETIAVFGDFDVDGMSATCLLTLALRKLGGDVHPYIPYRF 122 Query: 132 VDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 +GYG + + + I LI+TVD G + + + + +GIDV+V DHH+ +E +P Sbjct: 123 GEGYGLSDEALSRVIEGCDPDLIVTVDNGIAAREEVSHLGERGIDVVVTDHHE-PAELVP 181 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 V ++D L AGV ++ ++ Q + ++ L T+ Sbjct: 182 VGVPVTDPKIDPACVSRELAGAGVALKLVQVLGERRGQPDLW------RRYTEVATLGTI 235 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGG 309 D++ L G NRA V G+ R+ PG+ AL + S ITA+ L + + P +NA G Sbjct: 236 SDMMLLEGENRALVADGIAQMRQTRRPGIVALAATSGVDLSSITADELPFSLIPRLNAAG 295 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G +++ LL++DD+ +LA +L+ N RR +ES + ++A KV Sbjct: 296 RMGTTDVAFDLLLTDDAAVAAVLAGRLERTNAERREIESRLTDEAMEKVEAT---YDGGR 352 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 V+VV G+ WH G+ G++A+R+ ++ PS + + G GSGRS+ D+ + V Sbjct: 353 VVVVGGEGWHEGVKGIVASRIANRYHVPSILFTISD-GVARGSGRSVGTVDLFRAVERC- 410 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +LV+ GGHA A G+T N + +P ++ + S ++ Sbjct: 411 -SDVLVRFGGHAGAVGVTCAASNLDAFRSRLGEVMG-QLPEEQFVDRGEVSAPVGLSEMS 468 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + ID LE P+G GN P+FA +++ V HL+ + + AI FR Sbjct: 469 VEAIDSLEVLQPFGQGNKKPLFAVHGVCMRNRTRVGASGNHLRF-VATDGVNPVPAIMFR 527 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + + W+G + +L V D Sbjct: 528 TPQIERACDCEAA----VDLVFEPVNETWQGRTKPKLMVRDI 565 >gi|319942338|ref|ZP_08016653.1| single-stranded-DNA-specific exonuclease RecJ [Sutterella wadsworthensis 3_1_45B] gi|319804211|gb|EFW01111.1| single-stranded-DNA-specific exonuclease RecJ [Sutterella wadsworthensis 3_1_45B] Length = 563 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 173/578 (29%), Positives = 264/578 (45%), Gaps = 29/578 (5%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 + LA++ +AR L R + L ++P P +L + Sbjct: 7 RPYDQHAADRLALS---GFLPPIARALAARGI---QVPSDLEQEWAGMLP-PAMLEGTRE 59 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 AA R+ A + + I DYD DGA + A+ +R L + AN ++PDR++ GYG P+ Sbjct: 60 AAERLALARERHQAVTIVADYDCDGATACAVGIRGLRMLGITANYFVPDRVLHGYGLTPN 119 Query: 141 LMEKFI--NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 +++ LI+TVD G +S A+ A GIDVI+ DHH +E A A+VNPN Sbjct: 120 VVDIVAARTPKPDLIVTVDNGISSAAAVDRARELGIDVIITDHHLPGAELPRAQAIVNPN 179 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPL 256 +L GV++ VL+ + +LR+ L +L+D VAL TV DVV L Sbjct: 180 LTGSTFPSKNLAGVGVIYYVLLALRSLLRERGVFDAKTQPRLDALVDFVALGTVADVVKL 239 Query: 257 IGLNRAYVVKGLMVAR-RQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGES 314 NR V +G+ R + + GL+AL + G+ + P INA GR+G Sbjct: 240 DKNNRILVSQGIRRIRGGRTHAGLEALFAIAGRDIRTAGVRDFGFAVAPRINAAGRLGTM 299 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 G L+SDD A L+ +N RR +ES M + AEA + D+ + + Sbjct: 300 ENGIECLLSDDPAAALDFAESLNSINTERRELESEMQQLAEAALA--NIDLDHHATFTIF 357 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EG 432 ++ G+VGL+AARLKE+ RP A + E+G+ GSGRSI G + + + G Sbjct: 358 NPSFNEGVVGLVAARLKERIHRPVIAFAPTENGELKGSGRSIPGIHLRDALDLTAKALPG 417 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ++++ GGHAMAAGL+++ F F++ + A + V DG L + AL Sbjct: 418 VVLRFGGHAMAAGLSIKPEGFKDFQAAFEEVIRSRCDASVFERVVLTDGGLAPDEITEAL 477 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 ++ +G G P+FA + S ++ HL+M E AI FR Sbjct: 478 CQEIDE-QIWGQGFEAPLFANE-VHVLSQTLLKGTHLKMMLEL-GGSRFDAIFFRRKE-- 532 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + VN +RG + QL V A Sbjct: 533 -------PLASLTRIAYRPSVNEFRGRRTVQLVVEAAE 563 >gi|257086976|ref|ZP_05581337.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis D6] gi|256995006|gb|EEU82308.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis D6] Length = 703 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 162/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S A ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|167837156|ref|ZP_02464039.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia thailandensis MSMB43] Length = 507 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 166/508 (32%), Positives = 244/508 (48%), Gaps = 23/508 (4%) Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 K+++ DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 14 GRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELAATRKPD 73 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G S D + A +GIDV+V DHH A A+VNPN+ H+ Sbjct: 74 LLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFPSKHIAG 133 Query: 212 AGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 GV+F VL+ + LR L LLDLVAL TV DVV L G NR V +GL Sbjct: 134 VGVMFYVLLALRAELRARGAFGERRPEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGL 193 Query: 269 MVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 R A + R +A +LG+ +GP +NA GR+ + +LG L +DD Sbjct: 194 QRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIECLTTDDI 253 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 LA +LD +N+ RR +E+ M +QA A + + D +A+ I + WH G++G++ Sbjct: 254 GRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATITLFNPEWHQGVIGIV 311 Query: 387 AARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAM 442 A RLKE+F RP+F + +DG GSGRSI GF + + E ++V GGHAM Sbjct: 312 AGRLKERFHRPAFTFAHADDGGARVKGSGRSIPGFHLRDAIDLISKREPDLIVTFGGHAM 371 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AAG+T++ N R F+ A + V + DG L + ++++L+ A + Sbjct: 372 AAGVTLDTGNVPRFAAAFEAVAREWLTDDALARVIETDGDLEDAYFTPQVVELLD-AAVW 430 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 G G P P+F+ + S +V HL++ + + AI F Sbjct: 431 GQGFPAPLFSGE-FDVASQALVKDKHLKLQLM-RGRQRFNAIWFNHAE---------PLP 479 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 R V L + W G R QL V A+ Sbjct: 480 ARATVAFRLASDTWNGMTRVQLIVEHAA 507 >gi|257085065|ref|ZP_05579426.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis Fly1] gi|256993095|gb|EEU80397.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis Fly1] Length = 703 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVI+ DHH++ + AYALV+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIITDHHELPEQLPEAYALVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|256961808|ref|ZP_05565979.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis Merz96] gi|256952304|gb|EEU68936.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis Merz96] Length = 703 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 502 >gi|255975726|ref|ZP_05426312.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T2] gi|255968598|gb|EET99220.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T2] Length = 703 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 502 >gi|255972674|ref|ZP_05423260.1| predicted protein [Enterococcus faecalis T1] gi|257090004|ref|ZP_05584365.1| single-strand DNA-specific exonuclease recJ [Enterococcus faecalis CH188] gi|255963692|gb|EET96168.1| predicted protein [Enterococcus faecalis T1] gi|256998816|gb|EEU85336.1| single-strand DNA-specific exonuclease recJ [Enterococcus faecalis CH188] Length = 703 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 162/527 (30%), Positives = 254/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S A ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|256619183|ref|ZP_05476029.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis ATCC 4200] gi|256853245|ref|ZP_05558615.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis T8] gi|256598710|gb|EEU17886.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis ATCC 4200] gi|256711704|gb|EEU26742.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecalis T8] Length = 703 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 160/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + A+A+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAFAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRKIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|257419415|ref|ZP_05596409.1| predicted protein [Enterococcus faecalis T11] gi|257161243|gb|EEU91203.1| predicted protein [Enterococcus faecalis T11] Length = 703 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|256965005|ref|ZP_05569176.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis HIP11704] gi|256955501|gb|EEU72133.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis HIP11704] Length = 703 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGAYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|254302794|ref|ZP_04970152.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322986|gb|EDK88236.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 844 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 168/581 (28%), Positives = 285/581 (49%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W L + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KW-LLENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI N++KI I+GDYDVDG SV+L+ LS S N N YIP R +GYG Sbjct: 55 DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELSANVNYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A L+I+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 114 LNKDAIQNLKNENADLVISVDCGINSIEDINFANELNLDFIITDHHEITGDIPKALAIIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSFKYLAGVGTAFMLVYALYIKMNKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 I NR +V +GL R G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 ISDNRKFVKRGLETLRNSKWIGIKQLLRKIFPDNWDTREYFAYDIGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I +D + KL N R+ ++ +LE + ++ + + ++I+ Sbjct: 288 DAKQAVTLFIEEDGFRCLSIIEKLLENNIERKNIQKKILEMSIIEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGIATASCRSIDGLNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N + + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRIDSYIEENFDKDLFIKKLKIEKILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCQYENLRFTKNSTEHLMLDIKKDGYNFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + S K + + L + ++ C+L++ D Sbjct: 524 DY----YDIISSSKNIDIAFKLKLEIFKDRYMCKLQLEDIK 560 >gi|33865740|ref|NP_897299.1| single-stranded-DNA-specific exonuclease [Synechococcus sp. WH 8102] gi|33632910|emb|CAE07721.1| possible single-stranded-DNA-specific exonuclease [Synechococcus sp. WH 8102] Length = 634 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 152/542 (28%), Positives = 258/542 (47%), Gaps = 20/542 (3%) Query: 53 SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112 S + + + P L D + A RI +A E + + GDYD DG S AL+ Sbjct: 39 SEEDVAELITPQ--ELPDACGHFPDLEAAVERICRACEQGEALAVCGDYDADGMTSTALL 96 Query: 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ 172 +R L A IP R+ +GYG NP+++++ +G +L++TVD G + +ALQ A Sbjct: 97 LRALIPLGAKAEPAIPSRMEEGYGLNPAMVDRLHGQGIRLLVTVDNGVAAVEALQRARTL 156 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 +DVIV DHH + AL++P + S L G+ +++ + L + + + Sbjct: 157 SMDVIVTDHHSIPEPRPWMTALLHPATTPEASPYRGLAGVGLAYVLASSVAERLGRMDAI 216 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 + DL + TV D+ PL G NR ++++GL R G+ AL +P Sbjct: 217 QVAR------DLFCIGTVADMAPLTGANRRWLLEGLTTLHRSRCEGVVALQRLAGLGETP 270 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 +TAE++G+ + P INA GR+G+ L LL D + LA + D LN+ RR + A+ Sbjct: 271 LTAEDIGFQLAPRINAVGRLGDPVLVVDLLTESDPGKTMALARRCDDLNRQRRDLCDAIE 330 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 +A A V + + + +++ WH G++G++AARL E++ RP ++ + +G Sbjct: 331 AEATALVESDAEGLI-PPFLLLAQSHWHHGVIGIVAARLMERYHRPVALLAGDGEGLLRA 389 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S R+ +GF + K ++ +L + GGH A G TV+ L D + + Sbjct: 390 SARAPQGFAVDKALTTC--ADLLERFGGHPAAGGFTVKASQVHALHDRLNQLTQPWLDQE 447 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 + + L + +N L LE+ P+G G+P P+F ++ R +N HL + Sbjct: 448 GAGRPVRPEACLKLNEINWDLWAALETLTPHGVGHPAPLFWSRGCQVADWRTLNGGHLAV 507 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T + + +A+A+R + +R+ V L +N WRG +R QL + Sbjct: 508 TLQQGTHQR-RAVAWRCS-------PLTPMPERVDVAYELKLNVWRGERRLQLELKSIRE 559 Query: 592 VE 593 Sbjct: 560 HT 561 >gi|114775420|ref|ZP_01450988.1| single-stranded-DNA-specific exonuclease RecJ [Mariprofundus ferrooxydans PV-1] gi|114553531|gb|EAU55912.1| single-stranded-DNA-specific exonuclease RecJ [Mariprofundus ferrooxydans PV-1] Length = 565 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 170/549 (30%), Positives = 264/549 (48%), Gaps = 20/549 (3%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L R ++ + DF +P + L PDP + D DKAA R+ +AI N E I IFGD+D DG Sbjct: 35 LLDARGLT--ESDDFFSPRLADL-PDPFAMKDMDKAATRLARAIGNGEAIHIFGDFDADG 91 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK-FINEGAQLIITVDCGSTSYD 164 A+++ L IP R DG+G + + ++ ++VD G+T +D Sbjct: 92 VNGTAILVEALRAAGATVTFSIPHRADDGHGVGVESVRQVVAESACRMGLSVDTGTTCFD 151 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 A A G D+I+ DHH ++ A+AL+NP R D + LC GV F +L+ +++ Sbjct: 152 ACDEAARLGFDLIISDHHLPEATLPAAFALLNPARSDCGFAERALCGTGVAFFLLMAVWK 211 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 L P L +LLD VA+ATV DV+ L+G+NR V GL + G+ AL++ Sbjct: 212 KLTDQGNRPAYD-LRALLDRVAVATVADVMDLVGVNRILVAHGLQRLNSAPSIGMAALMQ 270 Query: 285 RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRR 344 ++ +TAE +G+ + P INA GR+ RLL + D+ E LA +LD N+ RR Sbjct: 271 VARVNKTVTAETIGFHLAPRINAAGRMQHGEAAMRLLSTSDAGEALRLAEQLDETNKQRR 330 Query: 345 LMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 +E + +QAE K+ V+ V +RWH G+VGL A RL K GRP+ Sbjct: 331 KVEVEVFKQAEEKL-------ADTDVLAVYDERWHAGVVGLAAGRLARKHGRPAAVGFVT 383 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 +G S R + GF IG +++ L GGHA A G T+ N+ F Sbjct: 384 PEGDIRVSLRGMNGFHIGALLNDC--SDHLAGFGGHAGAGGGTITAGNWAAFHAAFAAAV 441 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + V ++DGVL A A++ L + L P+G NP ++ + ++ R + Sbjct: 442 ARQAEGVSDHLVQQVDGVLEAGAMHFGLAERLARFEPFGRANPPSLWLLRDIQIAERRNL 501 Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584 +++ S L I F + +G + + G L + +RG + Q Sbjct: 502 KGNVVRLKLTD-GSRWLDGIVFGAGAMNG----VIEQGMTVSLIGQLQKDDYRGGQAIQF 556 Query: 585 RVLD-ASPV 592 + D +P Sbjct: 557 VIEDAIAPA 565 >gi|237744093|ref|ZP_04574574.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 7_1] gi|229431322|gb|EEO41534.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 7_1] Length = 844 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 162/580 (27%), Positives = 283/580 (48%), Gaps = 33/580 (5%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W+ + + ++ + I+ ++ NRN+S+D DF +P L D Sbjct: 7 WIL-ENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLKD 55 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 D A +RI +AI +++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 56 MDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYGL 114 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N ++ NE A LII+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 115 NKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVINS 174 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL+ Sbjct: 175 KRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPLV 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIGE 313 NR +V +GL + G+K L+ ++ + A ++GY+I P NA GR+ + Sbjct: 229 SDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLED 288 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L + +D + + KL N R+ ++ +LE + ++ + + ++I+V Sbjct: 289 AKQAVSLFVEEDGFKCLSIIDKLLENNAERKNIQKKILEMSIVEI--EKKQLYNKNLILV 346 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEG 432 +H G++G++A+++ +K+ +P+ + +E +G S RSI+G +I + Sbjct: 347 ANKSFHHGVIGIVASKILDKYYKPTIIMEIKESEGVATASCRSIDGLNI--VECLNSVSD 404 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ILVK GGH+ AAG T++ N K+ + KI+ +L VN Sbjct: 405 ILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYEF 464 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 465 LKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGGD 524 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + S K + + L + ++ C+L++ D Sbjct: 525 Y----YDTISGSKSIDIAFKLKLETFKDRYMCKLQLEDVK 560 >gi|313683635|ref|YP_004061373.1| exonuclease recj [Sulfuricurvum kujiense DSM 16994] gi|313156495|gb|ADR35173.1| exonuclease RecJ [Sulfuricurvum kujiense DSM 16994] Length = 533 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 157/523 (30%), Positives = 253/523 (48%), Gaps = 31/523 (5%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +P P L D K A R+ +AI N E+I + GDYDVDG S A++ RF S IP Sbjct: 35 IPHPSNLKDAQKGADRLARAIRNHERIALVGDYDVDGVTSTAIVKRFFDLISYPLITTIP 94 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R DGYG + +++E+ A +I TVD G + +A + +GID+I+ DHH Sbjct: 95 NRFSDGYGVSKNVLERL---DADVIFTVDNGINAIEAAEVCKTRGIDLIITDHHTPGDTL 151 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 AYA++NP + D +C A V +L + L+ + L D+ +ALA Sbjct: 152 PNAYAIINPKQSDCPYPFKEICGAQVGWLFMGLLKQELNLS------IDMRQFFPFLALA 205 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + DV+PL+G+NRA V GL + + + + +N S+ +++E++ + I P IN+ Sbjct: 206 IIADVMPLVGINRAIVKTGLDMMQTSSLSPFVMIRDFLNRSA-VSSEDIAFQIAPRINSA 264 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ ++++ L++D +++ L LN R+ E+ +A V + Sbjct: 265 GRLEDASIALEFLMADTTEKAYHQFELLTALNTLRKETEAQTTAEAMLHVNPKEQ----- 319 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 +IVV G+ W+ G+VG++A+RL F +P+ +S G GSGRSI D+ ++ Sbjct: 320 -IIVVAGEHWNEGVVGIVASRLVNHFQKPAIVLSVHN-GIAKGSGRSIGNVDLYSLIKS- 376 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 +E L K GGH MAAGL++ + A + P I G L + Sbjct: 377 -QEKHLQKFGGHKMAAGLSMS-SDAIEAFRLGINEAAKQINPADFIPHSDIIGELEHEMI 434 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ--DSETLQAI 544 N L+++LE PYG GNP P F + ++++ +H ++ +TL+ I Sbjct: 435 NFQLLELLERFEPYGEGNPRPRFLIREADVVTVKLFGSDQSHSRLELRPSRLSPKTLELI 494 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 AFR L K+M + + N W G QL V Sbjct: 495 AFR-------RTLECPENKKMSCSYTVNKNEWNGRVSIQLMVE 530 >gi|303327245|ref|ZP_07357687.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp. 3_1_syn3] gi|302863233|gb|EFL86165.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp. 3_1_syn3] Length = 574 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 166/585 (28%), Positives = 271/585 (46%), Gaps = 20/585 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 W G G + ++ +I ++ +L R ++ A +DFL+ + L P P Sbjct: 2 KNWQFREGPPGTPPSGW-AEQLSISPLLLEILWKRGLTEAEAMEDFLSARLNALTP-PSC 59 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 +AA + Q + + +K+ ++GDYDVDG + L + L + A ++PDR +G Sbjct: 60 WPQIPQAAELLAQELLSGKKLAVWGDYDVDGITASTLTLDVLEAHGIMAGHHLPDRRSEG 119 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +E +G +++TVDCG + +A++ A G+ V++ DHH +E PA A+ Sbjct: 120 YGLNIPQIELLAAQGYGILLTVDCGISDLEAVRRARELGMTVVISDHHLPPAELPPAQAI 179 Query: 195 VNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 NP + + S HL GV F ++ + L + + LDLVAL T+ DV Sbjct: 180 CNPRLDEAEASPCPHLAGVGVAFYLMAAVNAAL--APHTDKRYKMDEALDLVALGTLADV 237 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRI 311 + L G NR V GL + PG+ AL + +++ + + + P INA GR+ Sbjct: 238 MRLTGENRILVRGGLGKLAKAARPGMAALKVVSGFDAAASLSSGQVVFRLAPRINAAGRM 297 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G++ L +LL D LA +LD LN RR E + A + Q +AS+ Sbjct: 298 GQAELALQLLREKDYAAAARLAAQLDALNTERRAEEERIHAAARVQAEKQLSRGPRASL- 356 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ G WHPGIVG++A+R+ ++F RP+ + E+ G GSGRS+ FD+ A Sbjct: 357 VLYGQDWHPGIVGIVASRIVDEFYRPTIIL-CEDQGNLKGSGRSVREFDLH--SGLAATA 413 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 L+ GGH +AAG+ +E + F A + P ++ L+ + Sbjct: 414 PCLLGFGGHRLAAGVRLEPQRLEEFRERFDAVAAEALGPEPLRPTLTLECELDFARAGEQ 473 Query: 492 -LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSETLQAIAFR 547 + LE P+G GN PVFA P ++ + H+ + + Q TL A A+R Sbjct: 474 CFLKELELLQPFGPGNAEPVFASPPLLVKERSFLGHSREHVLLRVQDQKSGVTLSAKAWR 533 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + G+ + + ++ + G L V D PV Sbjct: 534 MAEA----LPPSLVGQTIRLAYTPRLDTYNGIVSVDLGVKDWQPV 574 >gi|94986757|ref|YP_594690.1| single-stranded DNA-specific exonuclease [Lawsonia intracellularis PHE/MN1-00] gi|94731006|emb|CAJ54369.1| Single-stranded DNA-specific exonuclease [Lawsonia intracellularis PHE/MN1-00] Length = 568 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 148/582 (25%), Positives = 251/582 (43%), Gaps = 26/582 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 +W++ I L IP+ + +L R ++ + FL+P ++ L P Sbjct: 2 KKWLTAPISSQIP--LHWANILHIPEPILILLWQRGITSLEEMNIFLSPKLQYLAH-PKH 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + A + AI + I+++GDYDVDG ++ L+ +++PDR +G Sbjct: 59 WSGIEDAVELLNNAIEQKQPIIVWGDYDVDGVTGSTVIREVLTFHQAQIIVHLPDRKKEG 118 Query: 135 YGPNPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YG N ++E+ L+ITVDCG + A+ A G VI+ DHH + PA+ Sbjct: 119 YGVNIPVIEQLALEHPKALLITVDCGISDVKAIYRARELGFTVIISDHHLPPTSLPPAHV 178 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + NP ++ +L G+ F ++ + + D+ +LDLVAL T+ D+ Sbjct: 179 ICNPRIGEN--PCSYLAGVGIAFFLMAALNNKRAEQ--TGQRMDMRDVLDLVALGTLADM 234 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRI 311 L G NR V GL+ PG+ AL + + A + + + P INA GR+ Sbjct: 235 AMLSGQNRILVKNGLLKIAEAKRPGIAALKTVSGFTPLTHLGAGQVTFHLAPRINAAGRL 294 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G + +L + A L+ +N+ RR E + A + + Q + Sbjct: 295 GSPRIAHEMLYTTSKDFAIEHATLLNKINEERRSEEEYIFNAALEQAQLE----NQRQGL 350 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 V+ G WH G++G++A+R+ E +P + + GSGRSI FD+ +S Sbjct: 351 VLHGSDWHQGVLGIVASRITEAVHKPVLILCTDGK-MLKGSGRSIADFDLYHGLSQC--A 407 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NI 490 + + GGH AAGLT+ + L + F N TP+ ID L N Sbjct: 408 DLFERFGGHKQAAGLTLPINHLHILKERFDTVVRNFFGDTPITPILHIDMELPFQKATNF 467 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHL-QMTFESQDSETLQAIAFR 547 + LE P+G GNP P+F+ ++Q H+ + E +LQA +R Sbjct: 468 NFLKSLELLQPFGIGNPEPIFSSLPLRIQRCNTFGKHKEHINMLVVEEISGISLQAKGWR 527 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + + R+ + +N++ G +L + D Sbjct: 528 LAKN----ISSSLQNSRIQLAYTPSLNFYNGISSIELEIKDW 565 >gi|315637977|ref|ZP_07893162.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter upsaliensis JV21] gi|315481825|gb|EFU72444.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter upsaliensis JV21] Length = 528 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 151/549 (27%), Positives = 280/549 (51%), Gaps = 36/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R ++ L+ + L P P L D KAA RI +AI +EK+ I GDYD Sbjct: 9 LRQILASR------FENDLHKKLCEL-PLPSCLKDIYKAANRIKEAIEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S ++ F + ++ IP+R DGYG N ++ + E ++IITVD G + Sbjct: 62 VDGIISCVILSEFFDDIGFDYSVKIPNRFKDGYGLNEEIINEL--EDIKVIITVDNGIAA 119 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + +GID+I+ DHH AYA++NP + + +C A V + ++ + Sbjct: 120 LEAAKLCKERGIDLIITDHHTPLQTLPEAYAIINPKQKECNFPNIEICGAQVAWYLIAAL 179 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A + D++ L LNRA V +G+ + +A+ Sbjct: 180 KEVCKLK------YDMCKFLELLAIAIIADMMELRDLNRACVRRGIECINKSKRAAFRAM 233 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 ++ +N+G++I P IN+ GR+ ++++ + L + D + ++ N++ Sbjct: 234 -KQYYQKDKFAIDNIGFLIAPLINSAGRMDDASVSYKFLHTKDLNKAMHYLEQIISFNES 292 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E++ ++ ++ S ++V G WH G++G++A+RL + F +PSF S Sbjct: 293 RKDEEKQLFEESLRQI------DEKQSCVIVGGVEWHEGVLGIVASRLAKHFKKPSFVFS 346 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 ED K GS RS+ DI ++S A L GGH AAGL++E ++ + QK Sbjct: 347 INED-KLKGSARSVGKIDILNLISKANPY--LKNYGGHKGAAGLSLELKDYENFKNLIQK 403 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 ++ ++ GVL S ++ ++++LES P+G NP P F N K+++ + Sbjct: 404 E-SALIDREEFLDTEEVLGVLEPSEIDFEMLEILESFEPFGYKNPRPYFVLENLKVKNKK 462 Query: 523 VVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +D++T++A+ F P E + +++ G + N +RG Sbjct: 463 LLGKEKKHLKLILV-KDNKTIEALFFNFDKEPNLE-------ESINLVGSISKNEFRGLV 514 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 515 TPQFIIQEL 523 >gi|327399023|ref|YP_004339892.1| single-stranded-DNA-specific exonuclease RecJ [Hippea maritima DSM 10411] gi|327181652|gb|AEA33833.1| single-stranded-DNA-specific exonuclease RecJ [Hippea maritima DSM 10411] Length = 569 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 264/509 (51%), Gaps = 15/509 (2%) Query: 41 DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 + ++L NRN+ K+FL PS+ L +P +L D D A RI +A+YNSE+I I G Sbjct: 38 EATQKILENRNIKTQSQIKNFLYPSLSQLY-NPFLLKDMDIAIDRIARAVYNSERIFIVG 96 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYD DG S +L++RF V A YIP R DGYG + ++K INE A+LIITVD G Sbjct: 97 DYDTDGVTSTSLLLRFFKEIGVKAGFYIPTR-DDGYGLSLEAIKKAINEKAKLIITVDNG 155 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 TS D +++A GIDVI+ DHH+ + A+A+V+P R D L GV F ++ Sbjct: 156 ITSIDEVEFAKTVGIDVIITDHHEPQDVLPKAFAVVDPKRNDSKFPFKELSGVGVAFNLI 215 Query: 220 VLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277 + + LR+D +L LDLVAL T+ D+VPL+ NR V GL Sbjct: 216 MALRNKLRKDGFFRGKGEPNLKKYLDLVALGTLADIVPLLDENRVCVKIGLFNKNHST-V 274 Query: 278 GLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 GL+ L + I +T++++G++I P INA GR+ ++++ + + DD++E E +A+KL+ Sbjct: 275 GLELLKKVSGIEGCLTSKHVGFVIAPRINAAGRLSDASIVVDMFLKDDAKEAETIALKLE 334 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 +N RR ++ ++ + E ++VIV + WH G++G++A + KF +P Sbjct: 335 EINNQRRKLQLKIINEVEKYARNLS-----SNVIVAAKEGWHKGVIGIVANAIAYKFKKP 389 Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + IS E IGSGRSI D+ + IL + GGH MA G+T++ Sbjct: 390 TIIISKENK-ISIGSGRSIGEIDLFSAIKE--TSDILERFGGHKMAVGITIKNDRIEEFS 446 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 + + T ++ D + S N ++ L P+G N P+F N Sbjct: 447 ERLNEIISTKYSEESATAKYEADCEVLLSIFNRRFVEELSLLEPHGPLNEEPLFFARNVV 506 Query: 518 LQSIRVVNLAHLQMTFESQDSETLQAIAF 546 ++ ++ + + + +L ++F Sbjct: 507 VKDEAMILDKYPK-YLLDDGTSSLWMVSF 534 >gi|257422493|ref|ZP_05599483.1| single-stranded-DNA-specific exonuclease recJ [Enterococcus faecalis X98] gi|257164317|gb|EEU94277.1| single-stranded-DNA-specific exonuclease recJ [Enterococcus faecalis X98] Length = 703 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 160/527 (30%), Positives = 252/527 (47%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + AYA+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPGAYAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +N GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNVLGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVSGRQLFDFR 502 >gi|78212848|ref|YP_381627.1| exonuclease RecJ [Synechococcus sp. CC9605] gi|78197307|gb|ABB35072.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. CC9605] Length = 618 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 166/556 (29%), Positives = 271/556 (48%), Gaps = 21/556 (3%) Query: 37 HAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 +P + VL R S A FL+P L P D ++A R+V A + E++ Sbjct: 10 LDLPLALRCVLRRRGFSSTSEAASFLSPG--DLPPTRDHFPDLEQACDRLVAACRSRERV 67 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 I GDYD DG S AL++R L+ IP R+ +GYG NP+++++ ++G +L++T Sbjct: 68 AICGDYDADGMTSTALLLRALAPLGAEPEPAIPSRMEEGYGLNPAMVQRLYDDGVRLLVT 127 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G + +AL+ A + + VIV DHH + E P AL++P + S L G+ Sbjct: 128 VDNGVAAREALELAASLTMQVIVTDHHTIPMERPPMTALIHPATTPEGSPYRGLAGVGLA 187 Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 ++V + L + + + DL + TV D+ PL+G NR+++++GL R Sbjct: 188 YVVAHAVAEALNKPEAIRVAR------DLFCIGTVADMAPLVGANRSWLLEGLNQLHRSE 241 Query: 276 NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 G++AL P+TAE++G+ + P INA GR+GE L LL ++D LA Sbjct: 242 CKGVQALQHLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVDLLTAEDPDSAMALAR 301 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 + D N+ RR + A+ +A A V + D S +++ WH G++G++AARL E++ Sbjct: 302 RCDDCNRQRRDLCDAIEAEAVALVEAES-DEALPSFLLLAQSHWHHGVIGIVAARLMERY 360 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 RP+ ++ E DG S R GF + + +S +L + GGH A G TV+ Sbjct: 361 HRPTALLAGEGDGSLRASVRGPIGFAVDRALSSC--SDLLTRFGGHPAAGGFTVKAELVH 418 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 L + A + + + D +L VN L L+S P+G G+P P+F Sbjct: 419 ALHERLCSEADSWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSLAPFGIGHPKPLFWSR 478 Query: 515 NHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 + R + HL +T +SE +AIA+R + + + V + +N Sbjct: 479 GVSVGDRRDLKGGHLALTLRQGESER-RAIAWRWDSS-------AAVPECCDVAYSISIN 530 Query: 575 YWRGSKRCQLRVLDAS 590 W+G +R QL + Sbjct: 531 RWQGEQRLQLELKAIR 546 >gi|308233819|ref|ZP_07664556.1| exonuclease RecJ [Atopobium vaginae DSM 15829] gi|328944553|ref|ZP_08242014.1| hypothetical protein HMPREF0091_11239 [Atopobium vaginae DSM 15829] gi|327490954|gb|EGF22732.1| hypothetical protein HMPREF0091_11239 [Atopobium vaginae DSM 15829] Length = 1180 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 150/584 (25%), Positives = 254/584 (43%), Gaps = 27/584 (4%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMP 70 S RW L + + +P +VARVLV+R + + + FL S+ Sbjct: 4 STQHNRWQLLSR--DLELEDKLINTCRLPRLVARVLVSRGYTTQEQIERFLIASLERDWV 61 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +PL + A R+ A+ + E+I++FGD+DVDG + AL+ L +IP R Sbjct: 62 NPLFIPGLAAVADRVQHALDSHERIVVFGDFDVDGICATALLTDALKTLGACVYPFIPSR 121 Query: 131 IVDGYGPNPSLMEK-FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 + +GY + + ++ LIITVD G +++ Y+ G+DV++ DHH+ S+ + Sbjct: 122 VHEGYSLSKAAFDRLVAAYNPNLIITVDNGIDAHEQCLYSIQHGVDVVITDHHEPTSQTL 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 P NP + L AGV ++ ++ + + LD+ L T Sbjct: 182 PVVPTANPKLNPSCASF-ELAGAGVALKLVDVLGAAYGK------PYLWKDYLDVATLGT 234 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAG 308 + D V L NRA V +G+ R GL AL I E L + P +NA Sbjct: 235 ISDRVKLTPENRALVTEGIRCIRASSRLGLSALARVCGIDIHATMPEELASSLIPRLNAA 294 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ LL + E A +L+ LN RR +E ++A + QQ Sbjct: 295 GRLDRVQTAYNLLQAQSLSEAYTYANELEELNICRRNLEKKACDEAFEQAKDVVK--QQK 352 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 VI V +W+ G++G++A+RL + P+FA S G SGRS+ ++ +V Sbjct: 353 HVIFVSSSQWNEGVIGIVASRLARAYELPAFACS-IAQGSAKCSGRSVGNVNLFDVVER- 410 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 L++ GGHA A G T + ++ + + + P + ++ S + Sbjct: 411 -FGSQLIRFGGHAAAVGFTCSPDILPTIIQHVERTIDALPASALYAPRELV-IPVDLSEI 468 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546 ++ +D LE P+G+GN P+FA N ++++ V H++ Q L +I F Sbjct: 469 TVSDLDSLEMLQPFGSGNERPIFAAHNIEMRNKMRVGAHNNHMRF-VAQQHKVRLSSIVF 527 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNY-WRGSKRCQLRVLDA 589 + + S + + VN W+G + +L + D Sbjct: 528 KASHIQN----LMSLHDTCDIVFNP-VNEVWQGRVKPKLMIKDI 566 >gi|51245781|ref|YP_065665.1| single-strand DNA-specific exonuclease [Desulfotalea psychrophila LSv54] gi|50876818|emb|CAG36658.1| related to single-strand DNA-specific exonuclease [Desulfotalea psychrophila LSv54] Length = 552 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 151/558 (27%), Positives = 259/558 (46%), Gaps = 22/558 (3%) Query: 42 IVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 + ++L R A ++FL+P + L P P + +A +++AI I+I+GD Sbjct: 6 PIEQILSLRGYQEAQAIEEFLSPRLSSL-PHPFTMLGMKEAVAEVLRAIDEGLPILIWGD 64 Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK-FINEGAQLIITVDCG 159 YDVDG ++++ F V +IP R+ +GYG N + + E L+ITVDCG Sbjct: 65 YDVDGTTGTSILVNFFERIDVKVYWHIPSRLTEGYGLNLTYFQNLPWAEEHFLLITVDCG 124 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 ++ ++ +G VIV DHHQ+ +P ++NP+ L GV F ++ Sbjct: 125 ISNATEIEAIKKRGGRVIVTDHHQLPKR-VPNCTVLNPSNEKCPFYGTSLAGVGVAFYLV 183 Query: 220 VLIYRIL----RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 + L +L S L VA T+ DVVPL +NR V G+ R Sbjct: 184 AGVRNALVSGELNGKYSQSTPNLKSFLGFVAFGTLADVVPLTPVNRLLVKAGVESFARTE 243 Query: 276 NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 GL+AL+E +I +T++++G+ + P +NA GR G ++ LL S +++ +A Sbjct: 244 FIGLQALLESSDIADGSVTSDDIGFNLAPKVNAAGRYGVAHQVVELLTSKEAEPAYKIAK 303 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 L LN +R+L+ + + E + + A ++ + GI+G+LA+RL ++F Sbjct: 304 TLTKLNNDRKLLCKENMAEIETLLHIETIK---ADACIIVEGDFFEGILGILASRLVDRF 360 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 P+ S DG GS RSIE +I +++ +L K GGH MAAG+++ +NF Sbjct: 361 HLPAIVFSRAADGDLKGSARSIEEINILDVITE--TSFLLKKFGGHKMAAGMSMSPLNFA 418 Query: 455 RLC-DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 F + V + +++D + N + + + P+G GNP P F Sbjct: 419 AFRSAFVENLQRAEVKEIKQESRYELDASVE-QVFNPDSLALYQKMEPFGPGNPQPTFYD 477 Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 + + + R V HLQ+T + + ++AI F + G + + Sbjct: 478 AHALIVAARPVGQSKEHLQLTIRGKYGDNIKAIGFNLGEKGRNVI----AGSTVKIIFTP 533 Query: 572 CVNYWRGSKRCQLRVLDA 589 +N ++ Q R+LD Sbjct: 534 TINRFKERVSWQARILDI 551 >gi|256762619|ref|ZP_05503199.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T3] gi|256683870|gb|EEU23565.1| single-stranded DNA-specific exonuclease [Enterococcus faecalis T3] Length = 703 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 255/527 (48%), Gaps = 29/527 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KA RI QA+ E+I+++GDYD DG S +M + ++P+R V GYGP Sbjct: 1 MEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNRFVHGYGP 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N + + I +G QLI+TVD G ++A+ YA QG+DVIV DHH++ + A+A+V+P Sbjct: 61 NKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPEAFAIVHP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 G L GV F V + L LLDLVA+ T+ D+V L Sbjct: 121 RHPQGDYPFGDLAGVGVAFKVATALLGELPI-----------ELLDLVAIGTIADLVSLT 169 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNL 316 NR +V GL + + GL L++ + ++ E++G+ IGP +NA GR+GE+ Sbjct: 170 DENRTFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAP 229 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G L+ + D ++ +A +D N R+ + + + ++A + A V ++ Sbjct: 230 GVELMTTFDEEQSLEIAKYIDQQNNERKDIVTTIAKEALDLI------DPNAPVHILAKQ 283 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILV 435 WH G++G++A R+ ++ G+P+ ++ +E G GSGRSI ++ + ++ E+ Sbjct: 284 GWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQ--FT 341 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH MAAG+T+ N + + F + I L S A ID Sbjct: 342 HFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTAFIDQ 401 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPL 553 L P+G N P F F IR + AHL+ +Q+ L AIAF++ P Sbjct: 402 LRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQ-MNQEGAQLDAIAFQMG--PQ 458 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 + L Q V G L +N W G K+ QL V D + + F + Sbjct: 459 ADELAQ---GTADVAGQLSINEWNGRKKPQLMVTDFAVLGRQLFDFR 502 >gi|57505887|ref|ZP_00371812.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter upsaliensis RM3195] gi|57015917|gb|EAL52706.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter upsaliensis RM3195] Length = 528 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 148/549 (26%), Positives = 276/549 (50%), Gaps = 36/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R ++ L+ + L P P L D KAA RI +AI +EK+ I GDYD Sbjct: 9 LRQILASR------FENDLHKKLCEL-PLPSCLKDIYKAANRIKEAIEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S ++ F + ++ IP+R DGYG N ++ + E ++IITVD G + Sbjct: 62 VDGIISCVILSEFFDDIGFDYSVKIPNRFKDGYGLNEEIINEL--EDIKVIITVDNGIAA 119 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 A + +GID+I+ DHH AYA+VNP + + +C A V + ++ + Sbjct: 120 LGAAKLCKERGIDLIITDHHTPLQTLPEAYAIVNPKQKECNFPNIEICGAQVAWYLIAAL 179 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A + D++ L LNRA V +G+ + + Sbjct: 180 KEVCKLK------YDMCKFLELLAIAIIADMMELRDLNRACVRRGIECINKSKR-AAFRV 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 +++ +N+ ++I P IN+ GR+ ++++ + L + D + ++ N++ Sbjct: 233 MKQYYQKDKFAIDNISFLIAPLINSAGRMDDASVSYKFLHTKDLNKAMHYLEQIISFNES 292 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E++ ++ ++ S ++V G+ WH G++G++A+RL + F +PSF S Sbjct: 293 RKDEEKQLFEESLRQI------DEKQSCVIVGGEEWHEGVLGIVASRLAKHFKKPSFVFS 346 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 K GS RS+ DI ++S A L GGH AAGL++E ++ + QK Sbjct: 347 -INKDKLKGSARSVGKIDILNLISKANPY--LKNYGGHKGAAGLSLELKDYENFKNLIQK 403 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 ++ ++ GVL S ++ ++++LES P+G NP P F N K+++ + Sbjct: 404 E-SALIDKEEFLDTEEVLGVLEPSEIDFEMLEILESFEPFGYKNPRPYFVLENLKVKNKK 462 Query: 523 VVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +D++T++A+ F P E + +++ G + N +RG Sbjct: 463 LLGKEKKHLKLILV-KDNKTIEALFFNFDKEPNLE-------ESINLVGIISKNEFRGLV 514 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 515 TPQFIIQEL 523 >gi|261855024|ref|YP_003262307.1| single-stranded-DNA-specific exonuclease RecJ [Halothiobacillus neapolitanus c2] gi|261835493|gb|ACX95260.1| single-stranded-DNA-specific exonuclease RecJ [Halothiobacillus neapolitanus c2] Length = 597 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 159/598 (26%), Positives = 258/598 (43%), Gaps = 45/598 (7%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + Q I A++ +I +A +LVNR + +NP + L+P P + Sbjct: 11 IQRRQQPQIPEAMS-----SIDSRLAAILVNRGIVHP---RQINPDLEFLLP-PADMPGI 61 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137 D AA + A+ + +I+I GD+D DGA + AL +R L +PDR GYG Sbjct: 62 DVAADILADAVRENARILIIGDFDADGATATALCVRALRAMGAKQVEYTLPDRQRHGYGL 121 Query: 138 NPSLMEKF---INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +P+L++ + + +I+TVD G ++ + A VI+ DHH PA+A+ Sbjct: 122 SPALLKDWIAEADAPPDIILTVDNGIAAFAGVAAALTLNATVIITDHHLPGDTLPPAHAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVC 251 VNPN + GV F V+ + L + +L LDLVA+ TV Sbjct: 182 VNPNLNGSDFASKAIAGVGVAFYVMAALRERLSAQDWFAGGIARPNLARWLDLVAVGTVA 241 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGN-PGLKALIERVNISSPITAE-NLGYMIGPSINAGG 309 DVV L NR V +GL + Q PG+ AL + +LG+++GP +NA G Sbjct: 242 DVVSLDDNNRRLVAQGLARIQAQQCVPGISALFAVAGKDPRYASSTDLGFVVGPRLNAAG 301 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK------VLTQCD 363 R+ + +G L++DD AM L+ +N RR +E ML + + D Sbjct: 302 RLEDMRIGVDCLLADDPISARQYAMTLNEINHERRALEQEMLFSLKKQGKSSGLNELDLD 361 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----KGIGSGRSIEGF 419 + V+ D +H G++G++A RLKE++ RP F + E + K SGRSI G Sbjct: 362 RPIDPADWVIFDDSFHQGVIGIVAGRLKERWQRPVFVFAPENNDAPRAKLKASGRSIPGV 421 Query: 420 DIGK--MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 + + ++ GGHAMAAGL++ F + + Sbjct: 422 HLRDVLVSMATTAPDLMHAFGGHAMAAGLSLSFDQLDTFRRLFAREMAKHRLHFPDQAIV 481 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD 537 DG L+A+ + + L++ P+G P P+F L+ + H ++ Sbjct: 482 HTDGPLSANELTLDFAQQLQTCTPWGTDCPEPIFDNRFEVLERTPLKEGRHWRLRLRLLK 541 Query: 538 --------SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 L A+ F + GK H+ + +N +RG + QL ++ Sbjct: 542 TEPATPTIGADLTAVWFGIGDH-------IPAGKYWHLAYRIDINRFRGQQTLQLMIV 592 >gi|303239691|ref|ZP_07326216.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio cellulolyticus CD2] gi|302592862|gb|EFL62585.1| single-stranded-DNA-specific exonuclease RecJ [Acetivibrio cellulolyticus CD2] Length = 763 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 169/571 (29%), Positives = 275/571 (48%), Gaps = 37/571 (6%) Query: 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNP-SIRLLMPDPL-------ILTD 77 + I + ++VAR+ NR NP +IR ++ D T+ Sbjct: 11 DVQIPKEIIEATDGDELVARIFYNRGYK--------NPLTIRQMLKDEFYTPTDVNEFTN 62 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 KA RI+ A EKI ++GDYDVDG S ++ LS ++PDR +GYG Sbjct: 63 IKKAVDRILNAADRDEKICVYGDYDVDGVTSTVTLVECLSLFIDKVVYHVPDRFTEGYGM 122 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N ++EK EG L+IT DCG ++ + ++ A G+DVI+ DHH + SE A ++NP Sbjct: 123 NIEVIEKLAGEGVSLVITCDCGISNINEIKRAKELGMDVILTDHHNIPSELPNADVILNP 182 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 L++ +L + F + + + + + K LD++AL+ + DVV L Sbjct: 183 KLLEEGHKARNLSGCAMAFFLCLALLKHKGMEEKA------EDYLDMLALSLIADVVSLN 236 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNL 316 G NR + K L GL L+ + +S + T EN+ + I P INA GR+ + L Sbjct: 237 GENRYLLKKALPKLFNTKREGLIKLLGIASKTSELSTEENIAFQIAPRINAAGRMESARL 296 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL+ D + +A K+D LN R+ ++ +++QA +V T+ + +V+V+ D Sbjct: 297 PVELLLCKDPYMADEMAQKIDFLNTERKRVQQEIIDQAIEQVETKK---KNKTVLVLYND 353 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG-SGRSIEGFDIGKMVSFAVEEGILV 435 WH GI+G+ A R+ E + +P+ +S +EDGK + S RS++ +I +++ E L+ Sbjct: 354 FWHHGIIGIAAGRICELYRKPAILLSLKEDGKTVVGSARSVDDINIYELIKECSER--LL 411 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 K GGH+ AAGL++ + + + A T ID L V L D Sbjct: 412 KFGGHSQAAGLSLLKDDLQGFVGEIELLAEKKHFINETIK-VDIDMELEVDNVTDELYDR 470 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 L+ AGPYG G P+F K+ S R H M E +++ + A+ + G L Sbjct: 471 LQLAGPYGEGFEAPMFVSYGLKVLSDRKTEKNHHIMVLEGKNNTRISAVKWFGSGKSL-- 528 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 +GK +T + N ++G+ QL + Sbjct: 529 -----QGKVFDLTYKISKNTYKGNSSIQLTL 554 >gi|328955205|ref|YP_004372538.1| exonuclease RecJ [Coriobacterium glomerans PW2] gi|328455529|gb|AEB06723.1| exonuclease RecJ [Coriobacterium glomerans PW2] Length = 1107 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 165/584 (28%), Positives = 256/584 (43%), Gaps = 25/584 (4%) Query: 11 CSISG-FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLL 68 S+ G RW + G A + ++ + +VAR++V R +S AK FL PS+ Sbjct: 2 ASLEGCRRWTMVSG--DRRSAGLLAEELGVAPLVARIMVARGISSVRAAKRFLEPSLDRD 59 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 DPL + A+ R+ +AI E I IFGD+DVDG S L+ L +IP Sbjct: 60 WGDPLAIPGMADASMRLARAIEEHESIAIFGDFDVDGITSTCLLTEGLRALGARVQPFIP 119 Query: 129 DRIVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 +R +GYG + +E+ I LI+TVD G + + Y +GID++V DHH+ Sbjct: 120 NRFGEGYGITETALERVIRACAPSLIVTVDNGIAAGAEVDYLCERGIDLVVTDHHEPGES 179 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 +V+P L+ L AGV ++ + + L DL AL Sbjct: 180 VPQGVPVVDPK-LEASGCSHELAGAGVALKLVQALGDRSGAPDLW------RGLTDLAAL 232 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306 TV D++ L NRA V G+ R P AL + S +TAE L + + P +N Sbjct: 233 GTVSDMMELTPENRALVADGIARVRDSSRPAFSALASLAGVDLSAMTAEALSFSLIPRLN 292 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + L LL+ D E A +L+ +N RR +E+ + E A A V Sbjct: 293 AAGRLADPALALDLLLEWDPVEAGRRAAELEKINTRRRELEAELAEDALALV---GRASC 349 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 VIV + WH G+ G++A+RL +F P S E G GSGRS+ ++ +S Sbjct: 350 IGRVIVAGKEGWHEGVKGIVASRLVNRFHVPVVLFS-IEGGIARGSGRSVGSVNLFDAMS 408 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 +L++ GGHA A G T++ L + + +PA +I + S Sbjct: 409 RC--ADLLIRFGGHAGAVGATLDAARLPDLRERLAEILDE-LPAEAFEDRAEIATEVALS 465 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQAIA 545 +++ + + P+G GN P+ A + V + M F + D T+ AI Sbjct: 466 ELDVKTVAQISVLEPFGRGNAAPLLAARGVTMIDRAGVGRSADHMRFRATDGIATVPAIM 525 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 FR + + + + WRG + +L V D Sbjct: 526 FRAPDVQ----ELCACESAVDLVFQAIAERWRGQVKTKLLVKDI 565 >gi|118602650|ref|YP_903865.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567589|gb|ABL02394.1| exonuclease RecJ [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 573 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 151/569 (26%), Positives = 255/569 (44%), Gaps = 34/569 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 IP + ++ R ++ + L+ ++ L+ + D A + QA+ N ++I+I Sbjct: 17 DIPTFLKKIYAARGIN----ESHLSLNLIHLLKPNFL--QLDVALVLLEQALLNQKRILI 70 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIIT 155 GD+D DGA + + ++ L + +P+R GYG + +++ I + LIIT Sbjct: 71 VGDFDCDGATASVVAVKSLRMMGAKFVDFLVPNRFEHGYGLSEEIVKLAIQEKQPDLIIT 130 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VD G +S+D ++ A + I VI+ DHH A ++NPN +L GV Sbjct: 131 VDNGISSFDGVKLAKSSNIQVIITDHHLPSKTLPQADIIINPNLKGCEFLSKNLAGVGVC 190 Query: 216 FLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 F + L + N DL ++LDLVAL TV DVV L NR V +G+ Sbjct: 191 FYLFSAFKTHLIKCNYFTNYKITPPDLRNMLDLVALGTVADVVKLDQNNRILVNQGVKRI 250 Query: 272 RRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 +++ L S+ + A +LG+ + P +NA GR+ + + G + L+++D + Sbjct: 251 QQKKCAPGILALLEISNRPSATLRASDLGFSVAPRLNAAGRLNDISRGIKCLLTEDINDA 310 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI------QQASVIVVEGDRWHPGIV 383 A +L+ NQ R+ ++ M +QA+A V Q I I + WH GI+ Sbjct: 311 RRYAQELEAFNQQRKQEQARMQDQAQAIVDAQELSITQENMSSDRFAISLFDPSWHEGII 370 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHA 441 G++A +LKE + P + + GS RSI I ++ + ++K GGHA Sbjct: 371 GIVAGKLKEDYHCPVAIFAQSDSDL-KGSIRSIPSVHIKDLLDLLDRQNPDLILKFGGHA 429 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 MAAGL+++ NF F+ + + DG L A +++ +L AGP Sbjct: 430 MAAGLSIKPENFTDFKQAFENVIQTHLDNRMPKVELLTDGELEAFDLSLDNAQLLVDAGP 489 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560 +G G P+F ++ ++V + +++ AIAF + L Sbjct: 490 WGQGFDEPIFYGE-FEIIEQKIVGEKHLKFLLKLKGNTQVFDAIAFFQPPLLSMQAL--- 545 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 V L +N WRGS QL + Sbjct: 546 ------VAYKLSINSWRGSISLQLMIEQI 568 >gi|149921274|ref|ZP_01909730.1| single-stranded-DNA-specific exonuclease RecJ [Plesiocystis pacifica SIR-1] gi|149817934|gb|EDM77396.1| single-stranded-DNA-specific exonuclease RecJ [Plesiocystis pacifica SIR-1] Length = 602 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 168/578 (29%), Positives = 276/578 (47%), Gaps = 26/578 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW +E + + IV +++ R++ + ++FL+P +R L P + Sbjct: 38 RWTRSEREER-------AEALDVHPIVVELMLGRDLEALEAQREFLSPRLREL-SRPTQM 89 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +A +V A ++ +FGDYDVDG + ++ FL V + R GY Sbjct: 90 AGYAEAVELLVDAQQRKLRVGMFGDYDVDGVTTTTILTTFLECLGVEIVAKVASR-EGGY 148 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + +++T DCG++ ++AL + +GI +VIDHHQV PA AL+ Sbjct: 149 GFGVDAAKALQESRVDMVLTGDCGTSDHEALAWLEAKGIPSVVIDHHQVPETMPPATALL 208 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL--RQDNKVPLNFDLLSLLDLVALATVCDV 253 NP++ LC+AGV F + + L + D + LDLVAL TVCD+ Sbjct: 209 NPHQDGCGFPFKGLCSAGVGFYLAAGVRSKLAAKSPGSRKSLPDPRAWLDLVALGTVCDM 268 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRI 311 +PL+G NR V GL V ++ PG++ L++R + I +LG+ +GP +NA GR+ Sbjct: 269 MPLVGDNRILVRHGLEVMDQRRRPGVRELLKRARVDPRTHIDEGHLGFGLGPRLNAPGRL 328 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G + LL + S E E L ++++ N+ RR M+ ++ +A A + + I Sbjct: 329 GSAEPSLDLLRARSSAEAEALGARVEMFNERRRDMQQRIVAEAMALLAAD-PASPRRRGI 387 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 VV + W PGIVG+ AA + E++ RP+ I G+ GS R+ G D+ ++ Sbjct: 388 VVAREAWAPGIVGIAAAGIVERYQRPTLVIGIDPGSGEARGSARTAGGVDVRAALAEC-- 445 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITTPVFKIDGVLNASAVN 489 +L + GGH AAG+++ N L + F + P+ DG L ++ Sbjct: 446 RHLLRRFGGHKAAAGVSMPADNIDALKEAFDAACAEQMGEEADREPIDFHDGELALDDID 505 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVY 549 + LI +ES GP+G G P + ++ I+V+ +HL +T + + AIAFR Sbjct: 506 LRLISHIESLGPFGVGFARPRYLCAGAEVVRIKVLKGSHLALTLKQGKAHR-DAIAFRKG 564 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 L ++G R+ + N +RG R QL V Sbjct: 565 N------LPIAKGDRVGLLYTPERNSYRGHDRAQLIVE 596 >gi|124025745|ref|YP_001014861.1| DHH domain-containing protein [Prochlorococcus marinus str. NATL1A] gi|123960813|gb|ABM75596.1| DHH family:DHHA1 domain:Single-stranded-DNA-specific exonuclease [Prochlorococcus marinus str. NATL1A] Length = 629 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 147/577 (25%), Positives = 276/577 (47%), Gaps = 29/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL-I 74 RW+ + I + + VL+ R + + +++ PS +P+P Sbjct: 10 RWIL-PKPINEDDITNI----NLNHTLQAVLIRRGIDLNNEFDEYITPS---DLPNPEEH 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + KA +RI+ A EKI I GDYD DG S L++ LS +IP R +G Sbjct: 62 FDELSKATQRIINACLKKEKIAICGDYDADGITSTVLLVELLSILGAIVKPFIPSRQDEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++ N+G +L+ITVD G +++ A++ + + GID+I+ DHH++ +++ ++L Sbjct: 122 YGLNENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKLNIFSL 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + S +L G+ +L+ I + D + T+ D+ Sbjct: 182 IHPEKTPINSPYKYLAGVGIAYLLAKNICEKIDYDINNSTAN------IFFCIGTIADMA 235 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR ++ + L N G+K+++++++ + IT++++G+ I P INA GRIG+ Sbjct: 236 PLKGANRKWLKECLPKINSTTNKGIKSIMKKLSIHNVDITSDDIGFKIAPLINAVGRIGD 295 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 NL L + + + L +N+ R+ + S + ++A +++ +V+ Sbjct: 296 PNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYRS--DRKFLVL 353 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WHPGI+G++AAR+ EKF P+ ++ DG GS RS + + ++ + + Sbjct: 354 TKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVNQALAEC--DDL 411 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH+ AAG +++ N +L + + A+ + D ++ +N Sbjct: 412 LIAHGGHSAAAGFSIKNENIDKLREKLDQIANREFKDINLYKSITPDAFISFDQINYNFY 471 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 L GP+G NP P+F K+ I + HL+MT + + T++AI + Sbjct: 472 RQLTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTL-NDGTSTIEAIKWNGSTELK 530 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L + + ++ +N W+ QL +LD Sbjct: 531 KQDL-------IDIAFYIEINRWKKLNTLQLNILDIK 560 >gi|284044640|ref|YP_003394980.1| single-stranded-DNA-specific exonuclease RecJ [Conexibacter woesei DSM 14684] gi|283948861|gb|ADB51605.1| single-stranded-DNA-specific exonuclease RecJ [Conexibacter woesei DSM 14684] Length = 846 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 177/584 (30%), Positives = 273/584 (46%), Gaps = 26/584 (4%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74 G R L A+ +A+VLV R + A DP Sbjct: 3 GRR--IELAPCDPAAVEALRAALGCSRTLAQVLVRRGHADPAAAR--AFLAATDAHDPGE 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D A I+ + +I + GDYDVDG S A+++R L +A+ ++P RI DG Sbjct: 59 FGGIDVAVETILGHVRAGTRITVHGDYDVDGVCSTAILLRALRQLGADADWFLPSRIDDG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + +E+ G +L+ITVDC T+ + + A GIDV+V DHHQ +++ A Sbjct: 119 YGLAATTVERLAARGTRLLITVDCAITAVEEVAAARAAGIDVVVTDHHQPRADGRLPDAP 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 + + LCA GV + + ++R D LDLVALATV D+V Sbjct: 179 IVHPSI-SGYPFPDLCAGGVAYKLAQALHRAAGGDPARA-----DDDLDLVALATVADLV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 PL G NR V +GL PGL+AL+ + + A +GY + P INA GR+ Sbjct: 233 PLRGENRRLVREGLRALASTAKPGLRALMRVARVDPSGLDAGAVGYRLAPRINAAGRLYR 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 ++ G LL++DD +A +LD N RR+ E +L +AE +V ++ + V+ Sbjct: 293 ADAGVELLLTDDEARATAIADELDAANAERRMTEQRILWEAEEQV----RELGERPAYVL 348 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 G+ WHPG++G++A+R+ E+ RP+ I+ + G G GSGRSI FD+ + A Sbjct: 349 AGEGWHPGVIGIVASRIVERTNRPALLIALDPDTGSGTGSGRSIRAFDLLGALHAA--AP 406 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH AAGLT+ +L + F+ A +++ PV ++D ++ A+ + L Sbjct: 407 LLERYGGHRAAAGLTIAAGRVAQLREAFEAHAASVLSPEDLVPVERVDALVGGRALGLEL 466 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + L P G GNP P P L +R + H + + E+ +A+AF G Sbjct: 467 AEELARLEPCGMGNPRPNLLVPAAHLVDVRPMGQEGRHARFSVEA-GGTRCRAVAFSCDG 525 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 L T L N W G+ +L + A+P Sbjct: 526 R-----LPVDEQTPADATFRLERNEWNGAVEPRLLLRHATPSTP 564 >gi|291543766|emb|CBL16875.1| single-stranded-DNA-specific exonuclease RecJ [Ruminococcus sp. 18P13] Length = 677 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 174/576 (30%), Positives = 274/576 (47%), Gaps = 27/576 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +W + A A+T+ + + A VL R + ++ A DFL + DP + Sbjct: 2 KKWSI--TRPDEAAAGALTKGSDLEPLCAVVLAARGIRTVQAAADFLG---SDELSDPFL 56 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D +AA I +A+ + + I ++GDYD DG + ++ +L + YIP+R +G Sbjct: 57 IRDMQEAAEVINEAVESGKPICVYGDYDCDGVTATVMLYSYLECLGADVRFYIPER-SEG 115 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + + + EG LIITVD G + + G+ ++V DHHQ A A+ Sbjct: 116 YGMNEASIRQLAQEGVSLIITVDNGIAALAEAELIAQLGMTLVVTDHHQPGECLPRAAAV 175 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP+R D S +LC AGV ++ + + + L DL A+ TV D+V Sbjct: 176 VNPHRADCPSPYKNLCGAGVALKLIAAL-------DGGGYDMALEQFGDLAAIGTVADIV 228 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN-LGYMIGPSINAGGRIGE 313 PL G NR V +GL + GL ALI+ ++ + +G+M+ P INA GR G Sbjct: 229 PLDGENRFLVRRGLEYLQNTEREGLLALIQVAGLAEKPLDAHSIGFMLAPRINAAGRFGS 288 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L RLL+ DD QE E LA +LD LN R+ E+A+++Q + K+ + + A V+V+ Sbjct: 289 PTLAVRLLLCDDPQEAESLAAQLDQLNTERKAAENAIMQQIDQKLREE-PALLHARVLVL 347 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G+ WHPG++G+LAARL E+FG+P F +S E GS RS F + + + A G+ Sbjct: 348 AGEGWHPGVIGILAARLVERFGKPCFLLS-VEGDTARGSARSFGDFSVYQCLHAA--SGV 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L GGH A G+T+ + Q++A P + + +L + Sbjct: 405 LTHWGGHKGAGGMTLSAADLPEFDRLVQQYAREQFPVMPVPELSA--LLLPPALYTPKQA 462 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 LE P+GA NP P+FA + + N H ++T D + A F Sbjct: 463 AGLEVLAPFGAENPEPLFAVVGASVTGVTSTKNGQHSRITLRYGD-VNISAFWFFCK--- 518 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 + L +G + + + W G + R+ D Sbjct: 519 -PDALPFRQGDACDLLLTIQADSWNGKPCIRARIRD 553 >gi|94264313|ref|ZP_01288106.1| RecJ exonuclease [delta proteobacterium MLMS-1] gi|93455279|gb|EAT05489.1| RecJ exonuclease [delta proteobacterium MLMS-1] Length = 569 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 170/573 (29%), Positives = 265/573 (46%), Gaps = 22/573 (3%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82 + IP+ + VL R + FLNPS+ L PDP +L A+ Sbjct: 8 NAPPASRGRLAASCNIPESLVAVLWRRGLRDPAALDAFLNPSLADL-PDPDLLKGMAPAS 66 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 R + + I+I+ DYD DG + AL+ +L + IP R+ DGYG +P L Sbjct: 67 RLLADWLAKGAPIVIYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRDGYGLHPHL 126 Query: 142 MEK--FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 + + L+ITVDCG T +A+ AT G VI+ DHHQ E A A++NP++ Sbjct: 127 LASVPVAAQRQPLLITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAAAAVLNPHQ 186 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLI 257 +L GV F +L+ + R L + L LDLVAL TV D+V + Sbjct: 187 AGCSFPCPNLAGVGVAFYLLMGLRRRLVEQGSHRAAELPRLKDFLDLVALGTVADMVKVT 246 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G NR + GL V + PG AL I+ AE++ + + P +NA GRIGE + Sbjct: 247 GANRILIRAGLEVLQGNQRPGPAALAAVAGITPG-YAEDISFSLAPRLNAAGRIGEPEIA 305 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 +LLI DD + LA +LD LN+ RR M + + + + D+Q +I+ ++ Sbjct: 306 FKLLICDDPGQAAALAGELDELNRQRRAMSDKIYQDVRQTISSNIADLQN--IILFAHEQ 363 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 WHPG++G+ A RL ++ RP+ + G GSGRS+ G D+ V+ E +L Sbjct: 364 WHPGVLGIAATRLALEYDRPAILCALTN-GVAKGSGRSVAGLDLLAAVAGCRE--LLAGY 420 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP-VFKIDGVLNASAVNIALIDML 496 GGHA A G+++ + + + + + +P +D A+ Sbjct: 421 GGHAAALGVSMPKEVVAQFRERLNQQLISELPRARQERGEVDVDWFFADGAMEPGFTAAY 480 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + P+G GNP P F ++ VV HL+ +++ D ++ AIAF Sbjct: 481 QRLAPFGPGNPEPQFRIRG-RVGKATVVGSKHLRFSWQQAD-QSYNAIAFGRAD-----A 533 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 L + G + T L N+++G QL+V + Sbjct: 534 LPLTSG-VVEFTFTLRRNFYQGRSSWQLKVSEL 565 >gi|299783058|gb|ADJ41056.1| Single-strand DNA-specific exonuclease [Lactobacillus fermentum CECT 5716] Length = 513 Score = 325 bits (834), Expect = 9e-87, Method: Composition-based stats. Identities = 157/524 (29%), Positives = 245/524 (46%), Gaps = 25/524 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W + +P +A +LVN+ + S D A+ +LNP L P Sbjct: 4 SKYAWQGQ-ANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHT-P 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 L D D+A RI+ A+ EKI ++GDYD DG + LM L + Y+PDR Sbjct: 62 DALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFT 121 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYGPN ++ ++ I G QLI+TVD G A++YA QG+DV++ DHH + + PA Sbjct: 122 DGYGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAV 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P L GV F V + + +LDLVA+ + D Sbjct: 182 AIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP-----------VEMLDLVAIGELAD 230 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRI 311 +V L G N A V GL R+ PGL AL++ + +T ++G+ + P +NA GRI Sbjct: 231 LVSLAGENHALVALGLQQLRQGSRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 ++ G LL + D +E E LA ++D N+ R+ + + ++A A Q Q + Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQ-----QVPAL 345 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G WH G++G++AA + + G+P+ S E + GSGRS++G D+ + Sbjct: 346 VLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDL--FAALDQH 403 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 ++ GGHAMA G++ E L + P KI L + Sbjct: 404 RDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTK 463 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMT 532 L ++ P+G GN P + +V+ HL++ Sbjct: 464 DLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLK 507 >gi|15837712|ref|NP_298400.1| single-stranded DNA exonuclease [Xylella fastidiosa 9a5c] gi|9106065|gb|AAF83920.1|AE003946_11 single-stranded DNA exonuclease [Xylella fastidiosa 9a5c] Length = 581 Score = 325 bits (834), Expect = 9e-87, Method: Composition-based stats. Identities = 175/577 (30%), Positives = 270/577 (46%), Gaps = 39/577 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + RV R + P + L+ P L++ A + Q I + +I++ GD+D Sbjct: 2 LRRVYTARGCADPVTAQ---PCLAQLL-SPATLSNIQAATVLLTQVIKANGRILVVGDFD 57 Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 DGA + A+ +R L N +P+R+V GYG + +L+E+ L++TVD G Sbjct: 58 CDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTVDHGIA 117 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 + + A +G V+V DHH PA +VNPN DL L GV+F VL+ Sbjct: 118 CHAGVAAAKARGWQVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIFYVLLA 177 Query: 222 IYRIL---------------RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 + L + DL SLLDLVA+ TV D+VPL NRA V Sbjct: 178 LRARLYPVAHAEYEGQETLIHRSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNRALVAA 237 Query: 267 GLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324 GL RR QG GL+ALIE +TA ++G+ + P +NA GR+ + LG LL+++ Sbjct: 238 GLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIELLLTE 297 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEA---KVLTQCDDIQQASVIVVEGDRWHPG 381 D +A L+ +N RR+++ M + AE + + Q + +V + WHPG Sbjct: 298 DWTRARAIAAMLEEMNAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVC-LFDPDWHPG 356 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSFAV--EEGILVKG 437 ++GL+A+++K+K RP A++ E G + GS RSI G I +++ G++ K Sbjct: 357 VIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLAALDSGYPGMIQKF 416 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHAMAAGLT++ F+ +V + DG L A ++ L Sbjct: 417 GGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALHARALR 476 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRVYGTPLGEF 556 GP+G G P P+F ++ RV+ HL+M + L AI F + Sbjct: 477 LGGPWGQGFPEPLFDGE-FEVLQWRVLKERHLKMEVRHSGRHDALNAIYFNGWQGD---- 531 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +R+ + L + +RG QL V A +E Sbjct: 532 ---PPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIE 565 >gi|283850471|ref|ZP_06367759.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp. FW1012B] gi|283574042|gb|EFC22014.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio sp. FW1012B] Length = 565 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 274/579 (47%), Gaps = 23/579 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKD-FLNPSIRLLMPDPLI 74 +W+ A A+ + + +A +L +R ++ A D +L P +RLLM P Sbjct: 3 KKWIFPSQGVSAATADALAEALGLSPAIAALLYHRGLTTAEAMDAYLCPGLRLLMR-PDE 61 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + AA + +A+ + ++GDYDVDG AL++ FL + +P+R +G Sbjct: 62 IPGMEAAAALLAEALVAGRTVAVWGDYDVDGITGTALLVDFLRERGFSPLWRLPERAAEG 121 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N + +E+ +GA L++TVDCG + A G+DVIV DHH E PA A+ Sbjct: 122 YGLNIAGIEELARDGASLLVTVDCGIGGIAEVARARELGLDVIVTDHHLPGPELPPANAV 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 NP L GV F + + R+L + D+ LLDLVAL T+ DVV Sbjct: 182 ANPKLGPGPGT--DLAGVGVAFFLAAAVNRLLPGEPT-----DVRRLLDLVALGTLADVV 234 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIG 312 PL G NR GL++ PG+ AL E + + A + + + P INA GR+G Sbjct: 235 PLCGPNRILAKNGLLLLAEARRPGIHALKEASGHNPKAALGASQVTFGLAPRINAAGRMG 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + LL++ D LA +LD N RR E A+L +A + + + Sbjct: 295 RPDAALALLLAPDLDTARPLAAELDAENTRRRAEEDAILAEAMDQA----AERPGRFGLT 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEE 431 + WH G++G++A+R+ E+ RP+ ++ +E G GSGRSI D+ +++ Sbjct: 351 LFAPHWHQGVIGIVASRVAERRYRPTLILTADEAKGLLKGSGRSIPECDLHGLLTE--IG 408 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH MAAGL++ N L + F A + + P K+D L+ AV A Sbjct: 409 EVLNTFGGHKMAAGLSIVPDNLSLLAERFDAAAAKALGPVAPLPSLKLDAELSFGAVTAA 468 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYG 550 L+ + P+G GNP PVFA P K+ S R H+ ++ TL+ A+R+ Sbjct: 469 LVREIGLMEPFGCGNPEPVFASPPVKVLSRRGFGDNHVALSLRDPAAGVTLRGKAWRMA- 527 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + G + V + Y+ G +LR+ D Sbjct: 528 ---SDIRESLAGATVRVAFTPKITYFSGVPEIELRLRDI 563 >gi|72382197|ref|YP_291552.1| exonuclease RecJ [Prochlorococcus marinus str. NATL2A] gi|72002047|gb|AAZ57849.1| exonuclease RecJ [Prochlorococcus marinus str. NATL2A] Length = 622 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 145/577 (25%), Positives = 276/577 (47%), Gaps = 29/577 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPL-I 74 RW+ I + + VL+ R + + +++ PS +P+P Sbjct: 3 RWIL-PKPINEAEITNI----NLNHTLQAVLIRRGIDLNNEFDEYITPS---DLPNPEEH 54 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + KA +RI++A E I I GDYD DG S L++ LS +IP R +G Sbjct: 55 FDELSKATQRIIKACLQKENIAICGDYDADGITSTVLLVELLSILGAIVKPFIPSRQDEG 114 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++ N+G +L+ITVD G +++ A++ + + GID+I+ DHH++ +++ ++L Sbjct: 115 YGLNENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKLNIFSL 174 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P + S +L G+ +L+ I + D + + T+ D+ Sbjct: 175 IHPEKTPINSPYKYLAGVGIAYLLAKNICEKIDYDINISTAN------IFFCIGTIADMA 228 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL G NR ++ + L N G+K+++++++ + IT++++G+ I P INA GRIG+ Sbjct: 229 PLKGANRKWLKECLPKINSTTNKGIKSIMKKLSIHNVDITSDDIGFKIAPLINAVGRIGD 288 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 NL L + + + L +N+ R+ + S + ++A +++ +V+ Sbjct: 289 PNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYR--CDRKFLVL 346 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 WHPGI+G++AAR+ EKF P+ ++ DG GS RS + + ++ + + Sbjct: 347 TKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVNQALAEC--DDL 404 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L+ GGH+ AAG +++ N +L + + A+ + D ++ +N Sbjct: 405 LIAHGGHSAAAGFSIKSENIDKLREKLNQIANREFKDINLYKSITPDAFISFDQINYNFY 464 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 L GP+G NP P+F K+ I + HL+MT + + T++AI + Sbjct: 465 RELTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTL-NDGTSTIEAIKWNGS---- 519 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + + ++ +N W+ QL +LD Sbjct: 520 ---IELKKQDLIDIAFYIEINRWKKLNTLQLNILDIK 553 >gi|296135374|ref|YP_003642616.1| single-stranded-DNA-specific exonuclease RecJ [Thiomonas intermedia K12] gi|295795496|gb|ADG30286.1| single-stranded-DNA-specific exonuclease RecJ [Thiomonas intermedia K12] Length = 574 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 163/583 (27%), Positives = 258/583 (44%), Gaps = 32/583 (5%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 Q + Q ++A++ R V + + P +L + AA Sbjct: 7 QPDPRAQHRL-QAAGTHPLLAQLFAARGVKEADELE----LALPHLLPPALLKGAETAAV 61 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 + AI E+++I DYD DGA + A+ +R L + +P+R GYG +P++++ Sbjct: 62 VLADAIARGERLLIVADYDCDGATACAVGLRGLRAMGAAVSYLVPNRFTTGYGLSPAVVD 121 Query: 144 ---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 K + I+TVD G S + + A QGI V+V DHH A +VNPN+ Sbjct: 122 LALKHADGKPDWIVTVDNGIASVEGVARAREQGIRVLVTDHHLPGDTLPEAEVIVNPNQP 181 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIG 258 + GV+F VL+ + LRQ L +LLDLVAL TV DVV L Sbjct: 182 GCDFPSKSIAGVGVMFYVLLALRSELRQRGVFDATTQPRLDALLDLVALGTVADVVRLDA 241 Query: 259 LNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 NR V +GL R A L ++ + + +LG+ +GP INA GR+ + + Sbjct: 242 NNRLLVAQGLKRIRDGRMQPGVAALLQVAGREAARVNSADLGFALGPRINAAGRLADMTV 301 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEG 375 G L +DD LA LD N+ RR +E + +A A + + A I + Sbjct: 302 GIECLATDDPARALQLAQLLDTFNRERRSIEDGIKAEALAMLDGLDLGTEGSAPAISLFA 361 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGI 433 WH G++G++A R+K++ RP+F + EDG GSGRSI GF + + E G+ Sbjct: 362 PNWHEGVIGIVAGRIKDREHRPTFVFAPAEDGTLRGSGRSIPGFHLRDALDLVSKREPGL 421 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHAMAAG ++ F R F + A + ++DG L A + + Sbjct: 422 LLRFGGHAMAAGCSLVDDGFERFRAAFAQVAAEWLAPAQLQRRIEVDGPLPAQWLLPEMA 481 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE------TLQAIAFR 547 +L +A +G G P+F+ +++ R++ HL+ DSE +A+ Sbjct: 482 SLL-AAQVWGQGFAAPLFSAR-VQVRQQRLLGERHLKAKVRLLDSEGAPGDAQFDLVAWG 539 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L N W+G+ + QL + Sbjct: 540 RTDF---------LPDEARIAYRLESNTWQGTTQVQLVLEAIE 573 >gi|34763843|ref|ZP_00144751.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886380|gb|EAA23647.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 640 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 164/581 (28%), Positives = 282/581 (48%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D + A +RI +AI N++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DMEVATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A LII+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 114 LNKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKREENIYSFKYLAGVGTAFMLVYALYTKMDKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V +GL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 VSDNRKFVKRGLKLLNTTKWTGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L I +D + + KL N R+ ++ +LE + A++ + + ++I+ Sbjct: 288 DAKQAVSLFIEEDGFKCLSIIDKLLENNVERKDIQKKILEMSIAEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T+E N K+ + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIEIENIEEFYQRVDKYIEENFNKDLFVKKLKIEKILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +S L + ++ +L++ D Sbjct: 524 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 560 >gi|33863033|ref|NP_894593.1| DHH domain-containing protein [Prochlorococcus marinus str. MIT 9313] gi|33634950|emb|CAE20936.1| Single-stranded DNA-specific exonuclease [Prochlorococcus marinus str. MIT 9313] Length = 632 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 163/548 (29%), Positives = 259/548 (47%), Gaps = 24/548 (4%) Query: 46 VLVNRNV-SIDYAKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 VLV R V A L P PDP D KA R+ A +E + I GDYD Sbjct: 34 VLVRRGVLDSSTATTILEP---PKPPDPCDHFPDLAKAIVRLQGACQIAESVAICGDYDA 90 Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 DG S AL+M L IP+R +GYG N ++ + +G +LI+TVD G T+ Sbjct: 91 DGMTSTALLMVTLKCLGAQPIAAIPNRKSEGYGLNRDMVIRLHEQGIRLIVTVDNGVTAQ 150 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 DALQ A N ++VI+ DHH + + L++P+ S L G+ +L+ + Sbjct: 151 DALQQAENLSMEVILTDHHTLPDSPLNVLCLLHPSVTPQDSPYRCLAGVGLAYLLASSLA 210 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + + DL + TV D+ PL G NRA++ +GL R GL+AL Sbjct: 211 EAMDCKEAIGPAR------DLFCIGTVADMAPLTGANRAFLREGLNNLHRTRCKGLRALQ 264 Query: 284 ERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 I P+ AE++G+ + P INA GR+G+ L +LL D+ E LA + D LN+ Sbjct: 265 RLAGIEERPLKAEDIGFQLAPRINAVGRLGDPQLVVKLLTVDNEDEAMTLARQCDQLNRQ 324 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ + +A+ +A A V + +++ + WH G++G++AARL E++ RP+ ++ Sbjct: 325 RKDLCNAIEAEAIALVEAEGA--TPPPFLMLAQNHWHHGVIGIVAARLMERYFRPTALLA 382 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E DG+ S R+ GF + + L + GGH+ A G T+ G L + K Sbjct: 383 GEGDGRLRASVRAPSGFAVNDSLKAC--AVHLDRFGGHSAAGGFTIRAEKVGALHEALNK 440 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 A N + + +L +N+ L + L+ P+G G+P P+F N + Sbjct: 441 LASNWHATVGGGVSISPETLLKLHEINLDLWNSLQQLEPFGIGHPAPLFWARNCLVVDQH 500 Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582 + HLQ+ D + +AIA+R+ +R+ V + +N+W+G R Sbjct: 501 RMRGGHLQLILAQGDCQR-RAIAWRL-------ISEAQVPERIDVAFRINMNHWQGEDRL 552 Query: 583 QLRVLDAS 590 Q+ V+ Sbjct: 553 QMEVVALR 560 >gi|113954848|ref|YP_730523.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. CC9311] gi|113882199|gb|ABI47157.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. CC9311] Length = 631 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 164/545 (30%), Positives = 269/545 (49%), Gaps = 24/545 (4%) Query: 49 NRNVS-IDYAKDFLNPSIRLLMPDPL-ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGA 106 R ++ LN S +P P + +KA +R+ QA +E++ I GDYD DG Sbjct: 36 RRGLTEPAQVNALLNDSA---LPKPGGHFPELEKAVQRLHQACLKAERVAICGDYDADGM 92 Query: 107 ASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL 166 S AL++R L IP R+ DGYG N S++ + + G +LI+TVD G +++AL Sbjct: 93 TSTALLLRTLRTLGAEPQAAIPSRMADGYGLNCSMVNELHDAGVRLIVTVDNGVAAHEAL 152 Query: 167 QYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL 226 A + G++V++ DHH + A AL++P D S L G+ ++V + + Sbjct: 153 SRAEDLGMEVVLTDHHTLPKTRPKALALIHPATTPDHSPYRGLAGVGLAYVVARELAERM 212 Query: 227 RQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV 286 RQ + S DL + TV D+ PL G NR + +GL+ R PG++AL + Sbjct: 213 RQ------PAAIASARDLFCIGTVADMAPLTGANRTLLREGLLHLHRSNCPGVRALQQLA 266 Query: 287 N-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 P+ A+++G+ + P INA GRIG+ L LL +DD L + D LN+ RR Sbjct: 267 GLGDRPLRADDIGFQLAPRINAVGRIGDPQLVVDLLTADDQNSAIELGRQCDSLNRQRRE 326 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 + A+ +A A + + D +++ WH G++G++AARL ++F RP+ ++ + Sbjct: 327 LCDAIEAEALALL--ESDRDPLPPFLLLAQGHWHHGVIGIVAARLMDRFQRPTALLAADG 384 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 DG S R+ EGF + K + +L + GGH A G TV+ RL + A Sbjct: 385 DGLMRASVRAPEGFAVDKALDHC--TDLLERHGGHPAAGGFTVKAAQVHRLHEELNALAL 442 Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525 + + + + + +L+ +A+N L L S P+G G+P P+F K+ S R++ Sbjct: 443 SWIQTRGEGILVEPEALLSLTAINHELWSALLSLEPFGIGHPAPLFWSRGCKVTSQRLLR 502 Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 HL++T + E +AIA+R T Q + V + +N W+G + QL Sbjct: 503 GGHLKLTLVQDNCER-EAIAWRWQQT-------QPLPAIVDVAFRISLNRWQGEAKLQLE 554 Query: 586 VLDAS 590 + Sbjct: 555 IQALR 559 >gi|294339480|emb|CAZ87839.1| Single-stranded-DNA-specific exonuclease recJ [Thiomonas sp. 3As] Length = 574 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 160/583 (27%), Positives = 257/583 (44%), Gaps = 32/583 (5%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 Q + Q+ ++A++ R V + + P +L + AA Sbjct: 7 QPDPRAQHRL-QEAGTHPLLAQLFAARGVKEADELE----LALPHLLPPALLKGAEAAAV 61 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 + AI E+++I DYD DGA + A+ +R L + +P+R GYG +P+++E Sbjct: 62 VLADAIARGERLLIVADYDCDGATACAVGLRGLRAMGAAVSYLVPNRFTTGYGLSPAVVE 121 Query: 144 ---KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 + + I+TVD G S + + A QGI V+V DHH A +VNPN+ Sbjct: 122 LALQHADGKPDWIVTVDNGIASVEGVARAREQGIRVLVTDHHLPGDTLPEAEVIVNPNQP 181 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIG 258 + GV+F VL+ + LRQ L +LLDLVAL TV DVV L Sbjct: 182 GCDFPSKSIAGVGVMFYVLLALRSELRQRGVFDAASQPRLDALLDLVALGTVADVVRLDA 241 Query: 259 LNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 NR V +GL R A L ++ + + +LG+ +GP INA GR+ + + Sbjct: 242 NNRLLVAQGLKRIRDGRMQPGVAALLQVAGREAARVNSADLGFALGPRINAAGRLADMTV 301 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ-ASVIVVEG 375 G L +DD LA LD N+ RR +E + +A A + + A I + Sbjct: 302 GIECLATDDPARALQLAQLLDTFNRERRSIEDGIKAEALAMLEGLDLGAEGSAPAISLFA 361 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGI 433 WH G++G++A R+K++ RP+F + EDG GSGRSI GF + + E G+ Sbjct: 362 PNWHEGVIGIVAGRIKDREHRPTFVFAPAEDGTLRGSGRSIAGFHLRDALDLVSKREPGL 421 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L++ GGHAMAAG ++ F R F + A + ++DG L A + + Sbjct: 422 LLRFGGHAMAAGCSLVDDGFERFRAAFAQVAAEWLAPAQLQRRIEVDGPLPAQWLLPEMA 481 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE------SQDSETLQAIAFR 547 +L +A +G G P+F+ +++ R++ HL+ + + +A+ Sbjct: 482 SLL-AAQVWGQGFAAPLFSAR-VQVRQQRLLGERHLKAKVRLLDSEGAPGNAQFDLVAWG 539 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L N W+G + QL + Sbjct: 540 RTDF---------LPDEARIAYRLESNTWQGITQVQLVLEAVE 573 >gi|149005720|ref|ZP_01829459.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP18-BS74] gi|147762660|gb|EDK69620.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP18-BS74] Length = 505 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 + + GGHA AAG+T+E L + + +D L+ A+++ Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLET 467 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHK 517 + E P+G N P+F + Sbjct: 468 VKSFERLAPFGMDNQKPIFISRIFR 492 >gi|256028102|ref|ZP_05441936.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D11] gi|289766043|ref|ZP_06525421.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D11] gi|289717598|gb|EFD81610.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D11] Length = 698 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 161/581 (27%), Positives = 281/581 (48%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 1 KWIL-ENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 49 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI +++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 50 DMDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 108 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A L+I+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 109 LNKEAIQTLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 168 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 169 PKRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDVVAIGTVADIVPL 222 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V +GL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 223 VSDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 282 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L + +D + + KL N R+ ++ +LE + ++ + + ++I+ Sbjct: 283 DAKQAVSLFVEEDGFKCLSIIDKLLENNIERKNIQKKILEMSIVEI--EKKQLYNKNLIL 340 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 341 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNFVS 398 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N K+ + KI+ VL VN Sbjct: 399 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKVLAPYKVNYE 458 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 459 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLILDIKKDGYYFKNCIFFGGG 518 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +S L + ++ +L++ D Sbjct: 519 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 555 >gi|157738457|ref|YP_001491141.1| single-stranded DNA-specific exonuclease [Arcobacter butzleri RM4018] gi|157700311|gb|ABV68471.1| single-stranded DNA-specific exonuclease [Arcobacter butzleri RM4018] Length = 522 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 137/548 (25%), Positives = 254/548 (46%), Gaps = 42/548 (7%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L R+V+ + + P P D D A +RI +AI +E I I GDYDVDG Sbjct: 12 LLSARHVNNP------YSKLADIPP-PTSFKDIDIATKRIKKAILENETITIVGDYDVDG 64 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S +M+ F ++ N IP+R GYG + +++ L+ITVD G ++Y+A Sbjct: 65 IVSTTIMLDFFKQINIKVNHIIPNRFEHGYGLSTKIVD---LIEKGLVITVDNGISAYEA 121 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 + ID+I+ DHH V + A A++NP + D +C A V + + I + Sbjct: 122 SLKLKEKNIDLIITDHHTVGEKIPEALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKKE 181 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 + + ++ LDL+ +A + D++P+ LN +GL + K L Sbjct: 182 MNLN------VNMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKLKSSSREAFKLLNSI 235 Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 ++ + ++++G+ I P +N+ GR+ ++ + L+S+DS LD LN R+ Sbjct: 236 LS-KESLISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNNYRKT 294 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 ++ + +A K+ + + I+V + WH G++G++A++L + +P+F + +E Sbjct: 295 LQEDISNKANLKI------DKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFIFTVQE 348 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 + GS R+ ++ +++S A +L+ GGH AAGL+++ N + Sbjct: 349 NDIAKGSVRANSNINLYELISKA--SHLLIGFGGHKNAAGLSLKLENIEEFEKIINEELE 406 Query: 466 NIVPALITTPVFKID--GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 N L +ID G L+ S+V++ + ++E PYG N P+F N L + Sbjct: 407 NFKDDL----HIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNLVKYDL 462 Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 + HL++T + +AI F + L ++ + N ++G Sbjct: 463 IGRDKNHLKLTL-DSNGVIFEAIKFNDSNKNIPNIL--------NLIVSVAKNEFKGVIT 513 Query: 582 CQLRVLDA 589 Q + + Sbjct: 514 PQFLIQEI 521 >gi|124023156|ref|YP_001017463.1| serine/threonine specific protein phosphatase [Prochlorococcus marinus str. MIT 9303] gi|123963442|gb|ABM78198.1| Serine/threonine specific protein phosphatase [Prochlorococcus marinus str. MIT 9303] Length = 632 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 160/548 (29%), Positives = 261/548 (47%), Gaps = 24/548 (4%) Query: 46 VLVNRNV-SIDYAKDFLNPSIRLLMPDP-LILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 VLV R V A L P PDP D KA R+ A +E + I GDYD Sbjct: 34 VLVRRGVLDSSTATTILEP---PKPPDPCDHFPDLAKAIVRLQGACQTAESVAICGDYDA 90 Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 DG S AL+M L IP+R +GYG N ++ + +G +LI+TVD G T+ Sbjct: 91 DGMTSTALLMVTLKCLGAQPIAAIPNRKSEGYGLNRDMVIRLHEQGIRLIVTVDNGVTAQ 150 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 +ALQ A N ++VI+ DHH + + +L++P+ S L G+ +L+ + Sbjct: 151 EALQQAENLSMEVILTDHHTLPDSPLKVLSLLHPSVTPQDSPYRCLAGVGLAYLLASSLA 210 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + + V DL + TV D+ PL G NRA++ +GL R GL+AL Sbjct: 211 EAMDCKDAVGPAR------DLFCIGTVADMAPLTGANRAFLREGLNNLHRTRCKGLRALQ 264 Query: 284 ERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 I P+ AE++G+ + P INA GR+G+ L +LL D+ E LA + D LN+ Sbjct: 265 RLAGIEERPLKAEDIGFQLAPRINAVGRLGDPQLVVKLLTVDNEDEAMTLARQCDQLNRQ 324 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ + +A+ +A A V + +++ + WH G++G++AARL E++ RP+ ++ Sbjct: 325 RKDLCNAIEAEAIALVEAEGA--TPPPFLMLAQNHWHHGVIGIVAARLMERYFRPTALLA 382 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E DG+ S R+ GF + + L + GGH+ A G T++ G L + + Sbjct: 383 GEGDGRLRASVRAPSGFAVNDALKAC--AVHLDRFGGHSAAGGFTIQAEKVGALHEALNE 440 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 A + + + +L +N+ L + L+ P+G G+P P+F N + Sbjct: 441 LASHWHATVGGGVSISPETLLKLHEINLDLWNGLQQLEPFGIGHPAPLFWARNCLVVDEH 500 Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582 + HLQ+ D + +AIA+R +R+ + + +N+W+G R Sbjct: 501 RMRGGHLQLILAQGDCQR-RAIAWRW-------ISEAQIPERIDLAFRINMNHWQGEDRL 552 Query: 583 QLRVLDAS 590 Q+ V+ Sbjct: 553 QMEVVALR 560 >gi|283953639|ref|ZP_06371170.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni 414] gi|283794680|gb|EFC33418.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni 414] Length = 523 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 150/549 (27%), Positives = 271/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +AI +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDTYKAANRIKEAIEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ K LIITVD G + Sbjct: 62 VDGIISCVVMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINKL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 ++A + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 FEAAVLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 LN+D+ L+L+A+A + D++ L LNRA V +G+ + KA+ Sbjct: 179 ------KEVCKLNYDMSKFLELLAIAIIADMMELRDLNRALVRRGIEHINKSKRAAFKAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S +L GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILTLISK--TNSMLSNYGGHKGAAGISLNFENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEILEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + +++ G + N +RG Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNINLLGSISKNEFRGLV 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFVIKEI 522 >gi|237742354|ref|ZP_04572835.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 4_1_13] gi|229430002|gb|EEO40214.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 4_1_13] Length = 850 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 160/581 (27%), Positives = 281/581 (48%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKTNYKKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI +++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DMDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A L+I+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 114 LNKEAIQTLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V +GL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 VSDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L + +D + + KL N R+ ++ +LE + ++ + + ++I+ Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNIERKNIQKKILEMSVTEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N K+ + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +S L + ++ +L++ D Sbjct: 524 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 560 >gi|257452673|ref|ZP_05617972.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 3_1_5R] gi|317059213|ref|ZP_07923698.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 3_1_5R] gi|313684889|gb|EFS21724.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 3_1_5R] Length = 842 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 149/580 (25%), Positives = 278/580 (47%), Gaps = 34/580 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + +K AI IV ++ RN+S +P +L Sbjct: 5 KWIYQNYKYYPQKIE---KKEAIHSIVYSIMKERNLSHQE----------NFNTNPFLLK 51 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D ++A + +A + I I+GDYDVDG SV+L LS YIP R +GYG Sbjct: 52 DMEEAVSLLQEAKKKKQTIWIYGDYDVDGITSVSLCYLALSELGYEVEYYIPLR-DEGYG 110 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ N+G +++ITVDCG S + +A + G+ +IV DHH+++ E A A++N Sbjct: 111 LNQEALQSIYNQGGKIVITVDCGIVSSKEVDFANSLGMTMIVTDHHELQGELPKAAAVIN 170 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ L G F ++ ++ + ++ D+VAL T+ D+VPL Sbjct: 171 PKRKENIYPFPSLAGVGTAFFLMTALFEKEGKRK------EITKYFDIVALGTIADIVPL 224 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAGGRIGE 313 I NR V +GL + + GL+ L++R+ +A ++G++I P NA GR+ + Sbjct: 225 IENNRILVQQGLSLLAKSQWTGLRILVKRLFPDYETHHFSAYDVGFIIAPIFNAAGRLED 284 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + RL + DS++ L N +RR ++ +L+ ++ + ++ + IV+ Sbjct: 285 AKSSVRLFLEKDSKKANEQIDYLIQNNLDRRAVQEKILQACLEEISQK--KLEDKNSIVI 342 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + +H G++G++A++L ++F +P+ + + +G S RSI G +I + S Sbjct: 343 AREGFHHGVIGIVASKLVDRFYKPTIIMEIKANEGIATASCRSISGINI--VESLEAVSH 400 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L++ GGH+ AAG ++ N + + F+ + + ITT I L + L Sbjct: 401 LLLRYGGHSGAAGFSILIENIAKFYEEFEAILEDKISKEITTRKLNITKELLPFQIQYPL 460 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + ++ P+GA NP P+F+ + KL IR++ H+ D+ + F+ + Sbjct: 461 LHDMKYLEPFGASNPAPIFSLKHCKLDKIRLIGADKKHIMCNIHHGDTIFWNCVWFQAFD 520 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + V HL + +RG + ++ + D Sbjct: 521 IYEELLYI----QEVDVAFHLKLETYRGRYQYKIFIDDIQ 556 >gi|116070602|ref|ZP_01467871.1| RecJ exonuclease [Synechococcus sp. BL107] gi|116066007|gb|EAU71764.1| RecJ exonuclease [Synechococcus sp. BL107] Length = 599 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 168/546 (30%), Positives = 263/546 (48%), Gaps = 21/546 (3%) Query: 47 LVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 + R S++ AK FL P+ L L D KA R+V+A N E + I GDYD DG Sbjct: 1 MRRRGFRSVEEAKQFLIPT--SLPEAELHFPDLKKATNRLVKACQNHETVAICGDYDADG 58 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S AL++R L+ IP R+ +GYG NPS++++ +G Q+++TVD G + A Sbjct: 59 MTSTALLLRALAPLGAAPRAAIPSRMEEGYGLNPSMVDRQHRDGVQILVTVDNGVAASAA 118 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 LQ A G++VIV DHH + P AL++P + S L G+ +++ + Sbjct: 119 LQRAAELGMEVIVTDHHTIPDNPAPMTALIHPATTPNGSPYRGLAGVGLAYVLARAVAEQ 178 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 L Q + S DL + TV D+ PLIG NRA++++GL GL+AL Sbjct: 179 LNQ------PAAICSARDLFCVGTVADMAPLIGANRAWLLEGLGHLHHTECFGLQALQRL 232 Query: 286 VN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRR 344 +PITAE++G+ + P INA GR+GE L LL + + LA + D N+ RR Sbjct: 233 AGLGENPITAEDIGFQLAPRINAVGRLGEPRLVVDLLTASEPSSAMALARRCDDFNRQRR 292 Query: 345 LMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 + A+ +A A V D Q S +++ WH G++G++AARL E++ RP+ ++ + Sbjct: 293 DLCDAIEAEAVALVEADSSD-QLPSFLLLAQSHWHHGVIGIVAARLVERYHRPAALLAGD 351 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 +G S RS GF + + ++ +L + GGH A G TV N L + A Sbjct: 352 GEGLMRASVRSPRGFAVDQALNHC--AKLLERFGGHPAAGGFTVRAENVHALHEQLCVQA 409 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + + + D +L VN L L+S P+G G+ P+F ++ R + Sbjct: 410 DSWLTQQGQGLPIQPDALLRLDEVNWDLWKALQSLAPFGIGHEVPLFWSRGCSVEEKRDL 469 Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584 HL + ++E +AIA+R V + +N W+G +R QL Sbjct: 470 KGGHLALRLRQGETER-RAIAWRWD-------PASHVPDHCDVAYRVSLNRWQGEQRLQL 521 Query: 585 RVLDAS 590 + Sbjct: 522 ELKAIR 527 >gi|323143731|ref|ZP_08078399.1| single-stranded-DNA-specific exonuclease RecJ [Succinatimonas hippei YIT 12066] gi|322416444|gb|EFY07110.1| single-stranded-DNA-specific exonuclease RecJ [Succinatimonas hippei YIT 12066] Length = 577 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 174/563 (30%), Positives = 270/563 (47%), Gaps = 27/563 (4%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 I+ +VLV+R V+ D L+P + LL+ L D +A+ RI A+ N E +M+ G Sbjct: 32 DPILRQVLVSRGVTSDKE---LSPDLALLLHY-RDLKDIKEASERIAAAVINKEIVMVCG 87 Query: 100 DYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 DYDVDG AL + L ++ +P R GYG + +++K + G LIITVD Sbjct: 88 DYDVDGITGTALGVLCLKTFGLDKVLFDVPSRYDGGYGLSFKMIDKAVENGVTLIITVDN 147 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G + +A YA +GID+++ DHH+ A A+V+P R D +LC GV+F V Sbjct: 148 GISCCEAALYAKEKGIDLVITDHHESLGTLPEAAAVVDPKRCDCNFASKNLCGVGVLFYV 207 Query: 219 LVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 L+ + +L + + LDLVA+ T+ DVV L NR V GL RQ Sbjct: 208 LIAVRAVLIEKGYYLSRSAAPCMGQFLDLVAIGTIGDVVNLDANNRRLVKAGLQRMHRQN 267 Query: 276 -NPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIG-ESNLGSRLLISDDSQELEML 332 G+KAL E I I ++ + + P +NA GR+ + N L+SDD + L Sbjct: 268 AQIGVKALAEVSRIDMAKIDPVSIAFDLCPRLNAAGRLKLDDNPALLCLLSDDYDKALSL 327 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A+KLD N+ R E ML +A+ L Q +D +V+V+ W GI GL+A RLKE Sbjct: 328 AVKLDFCNRRRSDFEKVMLAEAKEDALLQAND----NVLVLYRSSWLSGISGLIAGRLKE 383 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM--VSFAVEEGILVKGGGHAMAAGLTVER 450 ++ +P F + + + GS RS+ GF I +L++ GGH+MAAG T++ Sbjct: 384 QYQKPCFVFAGDTENV-TGSARSVPGFSIVGALNHINDAAPDLLLRYGGHSMAAGATLKV 442 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-NIALIDMLESAGPYGAGNPNP 509 R + K ++ DG+L S ++ LE+ GP+G G P P Sbjct: 443 TQLKRFKELLNK--EALILNDKGEEEVLSDGILPESYFKDLDFALALEACGPWGQGFPEP 500 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 VF ++ RV+ H++ + D+ AI FR G + Sbjct: 501 VFDG-VFYIEETRVLANRHVRFRLRT-DNTVFSAIRFRASVYEKNLL----PGIEVKAAF 554 Query: 570 HLCVNYWRGSKRCQLRVLDASPV 592 + V+ + ++R ++++ PV Sbjct: 555 SVGVDRYYANERVEIKIEYIEPV 577 >gi|315636757|ref|ZP_07891986.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter butzleri JV22] gi|315478974|gb|EFU69678.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter butzleri JV22] Length = 522 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 138/548 (25%), Positives = 255/548 (46%), Gaps = 42/548 (7%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L R+++ + + P P D D A RRI +AI +E I I GDYDVDG Sbjct: 12 LLSARHINNP------YSKLADIPP-PTSFKDIDIATRRIKKAILENETITIVGDYDVDG 64 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S +M+ F ++ N IP+R GYG + +++ L+ITVD G ++Y+A Sbjct: 65 IVSTTIMLDFFKQINIKVNHIIPNRFEHGYGLSTKIVD---LIEKGLVITVDNGISAYEA 121 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 + ID+I+ DHH V + A A++NP + D +C A V + + I + Sbjct: 122 SLKLKEKNIDLIITDHHTVGEKIPQALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKKE 181 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 + + ++ LDL+ +A V D++P+ LN +GL + K L Sbjct: 182 MNLN------VNMSDYLDLLCIAIVADIMPMTALNYTITKQGLKKLKSSSREAFKLLNSI 235 Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 + + + ++++G+ I P +N+ GR+ ++ + L+S+DS LD LN R+ Sbjct: 236 L-LKESLISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANEYLSLLDELNNYRKT 294 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 ++ + +A K+ + + I+V + WH G++G++A++L + +P+F + +E Sbjct: 295 LQEDISNKANLKI------DKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFIFTVQE 348 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 + GS R+ ++ +++S A +L+ GGH AAGL+++ N + Sbjct: 349 NNIAKGSVRANSNINLYELISKA--SHLLIGFGGHKNAAGLSLKLENIEEFEKIINEELE 406 Query: 466 NIVPALITTPVFKID--GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 N L +ID G L+ S+V++ + ++E PYG N P+F N L + Sbjct: 407 NFKDDL----HIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNLVKYDL 462 Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 + HL++T + + +AI F + L ++ + N ++G Sbjct: 463 IGRDKNHLKLTL-NSNGVIFEAIKFNDSNKNIPNIL--------NLIVSVAKNEFKGVIT 513 Query: 582 CQLRVLDA 589 Q + + Sbjct: 514 PQFLIQEI 521 >gi|260494322|ref|ZP_05814453.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_33] gi|260198468|gb|EEW95984.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_33] Length = 844 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 161/581 (27%), Positives = 282/581 (48%), Gaps = 33/581 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + ++ + I+ ++ NRN+S+D DF +P L Sbjct: 6 KWIL-ENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDF----------NPFDLK 54 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D D A +RI +AI +++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 55 DMDIATQRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ NE A L+I+VDCG S + + +A +D I+ DHH++ + A A++N Sbjct: 114 LNKEAIQTLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVIN 173 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL Sbjct: 174 PKRDENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIG 312 + NR +V +GL + G+K L+ ++ + A ++GY+I P NA GR+ Sbjct: 228 VSDNRKFVKRGLKLLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLE 287 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++ L + +D + + KL N R+ ++ +LE + A++ + + ++I+ Sbjct: 288 DAKQAVSLFVEEDGFKCLSIIDKLLENNIERKNIQKKILEMSIAEI--EKKQLYNKNLIL 345 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEE 431 V +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 346 VANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGLNI--VECLNSVS 403 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ILVK GGH+ AAG T++ N K+ + KI+ +L VN Sbjct: 404 DILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYE 463 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVY 549 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 464 FLKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGG 523 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 +S L + ++ +L++ D Sbjct: 524 DYYDIISSSKSIDI----AFKLKLETFKDRYMYKLQLEDVK 560 >gi|301165990|emb|CBW25564.1| putative single-stranded-DNA-specific exonuclease [Bacteriovorax marinus SJ] Length = 579 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 161/562 (28%), Positives = 260/562 (46%), Gaps = 20/562 (3%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++ R+ R + +FL+ ++ MP + D KA+ RI+QAI N+EKI I+ Sbjct: 21 FHPVIQRIFDKREMGPKEIAEFLSWDLKS-MPSLTSMKDVQKASTRIIQAIENNEKIAIY 79 Query: 99 GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 GDYDVDG S AL+ F + + P R ++GYG +P ++K EG +++ITVDC Sbjct: 80 GDYDVDGTTSCALLYHFFKMIDIEVGLIQPSRFIEGYGIHPPSIDKAHEEGYKVVITVDC 139 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYALVNPNRLDDL--SGQGHLCAAGVV 215 G T+ +A A GID+I+ DHH+ E A+A+VNPNR D+ S L V Sbjct: 140 GITNNEAATRAKEIGIDLIITDHHKDARDEMPDAFAIVNPNRRDEPKDSELKALAGVTVG 199 Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 F + V I L L LL A+ T+CD+ L N V GL Sbjct: 200 FALAVQIREDLIAAG--RKIPSLYPLLQFAAIGTICDLAKLNPTNLKIVRHGLKQIPSTE 257 Query: 276 NPGLKALIE-RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 PG++A + +E L + IGP IN+ GR+ +LL +D ++ Sbjct: 258 YPGIRAFFSPEERERGFVPSEKLSFNIGPLINSKGRLDHPEKALQLLTIEDDKKAFEYYS 317 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 L++ N R+ +++ + A+ +VL + + V +V WH G++G++A++L E F Sbjct: 318 HLEICNNERKFIQAEVFNSAKEQVLKNLNGSEHI-VSIVYSPEWHEGVIGIVASKLVETF 376 Query: 395 GRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453 P+ + EE G S RS ++ + +K GGH AAGL++ N Sbjct: 377 KVPAIVFTNAEEKGVIKASARSAGDLNL--FDCLNENADLFLKFGGHKAAAGLSMPVENL 434 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 + + +PA+ T D + +N L+ LE P+G GN P+F Sbjct: 435 SQFKENMLSTIAK-LPAIQRTVQSYYDVEIGPEEINPRLLKELELLEPFGMGNQKPIFKM 493 Query: 514 PNHKLQSIRVVNLAHLQMTFESQD--SETLQAIAFRVYGTPLGEFL------MQSRGKRM 565 +L + ++ H++ + S + S L+ I+F G E + G + Sbjct: 494 KGFRLDNYDILKDVHVRWSLSSLNDPSTKLKGISFNYIGKWGIEDPQDLYNAQERNGDEL 553 Query: 566 HVTGHLCVNYWRGSKRCQLRVL 587 L VN++RG++ QL + Sbjct: 554 TAYFTLGVNHFRGNQYIQLMIE 575 >gi|121612339|ref|YP_999748.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 81-176] gi|87248941|gb|EAQ71903.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 81-176] Length = 523 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 147/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A V D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFVIKEI 522 >gi|254457069|ref|ZP_05070497.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacterales bacterium GD 1] gi|207085861|gb|EDZ63145.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacterales bacterium GD 1] Length = 529 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 169/545 (31%), Positives = 278/545 (51%), Gaps = 39/545 (7%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L NR + + + +P+P +L D DK+A++I AI N++KI + GDYDVDG Sbjct: 16 LLSNR-FESE------DKKLSQ-IPNPSLLQDADKSAKKIADAIRNNKKITLVGDYDVDG 67 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 +S A+M+ F + IP+R DGYG +P+++E+ A L+ITVD G ++ +A Sbjct: 68 VSSTAIMVDFFRQIPYPLDAIIPNRFTDGYGVSPTVLERV---DADLVITVDNGISALEA 124 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 + + ID+I+ DHH AYA+V+P +C A V +L+L L+ + Sbjct: 125 ARICKERHIDLIITDHHTPDDSLPDAYAIVDPKLSSCEYPFKEICGAQVAWLLLALVKKE 184 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 L L+ D+ LD++A+A + D++PLI +NR V +GL V P + + Sbjct: 185 L------SLSIDMRQFLDILAIAIIADIMPLIDINRTLVKEGLKVLMNSNRPASIVIRDF 238 Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 +N S IT+E++ + I P IN+ GR+ ++++ + D+ L LN R+ Sbjct: 239 LN-KSTITSEDIAFQIAPRINSAGRLEDASIALEFFCAKDTHTAYKQFELLGKLNDLRKE 297 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 E+ ++A D A VIVV + WH G+VG++AARL +KFGRP+ +S E Sbjct: 298 TEAEATKEAI------ADANPDADVIVVAKENWHEGVVGIVAARLVDKFGRPAIVLS-IE 350 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 +G GS RSI I +++ E +L K GGH MAAGL ++ N D A Sbjct: 351 NGVAKGSARSIGEISIYELIKA--NERLLTKFGGHKMAAGLGLQEENIEAFRDAINFTAS 408 Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525 + P K+ G+L++ ++ L+++L+S PYG N P F + ++ SI+ + Sbjct: 409 -TLNPEDFIPKEKVTGILSSEDIDFELLNLLQSFEPYGEANHRPSFLLRDAEIVSIKTMG 467 Query: 526 LA--HLQMTFES--QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 H ++T + D +TL+ I FR + L +++ + + N + G Sbjct: 468 KEKSHCKITLKQHPHDRKTLELILFR-------QVLEMPTDRKISCSYTVAKNEFNGRIS 520 Query: 582 CQLRV 586 QL V Sbjct: 521 LQLLV 525 >gi|257463169|ref|ZP_05627569.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D12] gi|317060761|ref|ZP_07925246.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D12] gi|313686437|gb|EFS23272.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D12] Length = 842 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 146/589 (24%), Positives = 270/589 (45%), Gaps = 36/589 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ Q I IV ++ RN+S + +P +L Sbjct: 5 KWIYQNYQYYPQEKEET-----IHSIVYSIMKERNLSY----------RKEFTSNPYLLK 49 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D DKA + +A + + I+GDYDVDG SV+L L+ YIP R +GYG Sbjct: 50 DMDKAVHLLQEAKKKQQTVWIYGDYDVDGITSVSLCYLALTELGYPVEYYIPLR-DEGYG 108 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ +G +++ITVDCG S + +A + G+ +I+ DHH+++ E A A++N Sbjct: 109 LNQEALQYIYEQGGRIVITVDCGIVSVKEVDFANSLGMTMIITDHHEIQGELPKAAAVIN 168 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R ++L L G F ++ ++ + ++ D+VAL TV D+VPL Sbjct: 169 PKREENLYPFPSLAGVGTAFFLVTALFEQEGKR------EEIQKYFDIVALGTVADIVPL 222 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS---PITAENLGYMIGPSINAGGRIGE 313 + NR V +GL + + GL+ L++R+ +A ++G+++ P NA GR+ + Sbjct: 223 VEDNRILVQQGLALLAKSQWTGLRILVKRLFPDYETRRFSAYDIGFILAPIFNAAGRLED 282 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + +L + DS++ L N RR ++ +L+ ++ Q +++ + +V+ Sbjct: 283 AKSSVKLFLEKDSKKANAQIDSLIQNNMERRRVQEKILQACLEEI--QQKKLEEKNALVI 340 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + +H G++G++A++L ++F +PS + E+G S RSI G +I + + Sbjct: 341 AREGFHHGVIGIVASKLVDRFYKPSIVMEIKPEEGIATASCRSISGINIVEALGE--ISP 398 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L++ GGH+ AAG ++ N + F+K V + I L + L Sbjct: 399 LLLRYGGHSGAAGFSILIENISTFYEEFEKVLSRKVTEELLAKKLSITKELLPFQIQYPL 458 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + + P+GA NP P+FA + +L IR++ HL D+ + F+ Sbjct: 459 LHDMRYLEPFGASNPAPIFALKHCRLDKIRLIGADKKHLMCNIHHGDTVFWNCVWFQASD 518 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK 599 K + + HL + +RG + ++ + D + + Sbjct: 519 VYEELLFA----KEVDIAFHLKLEMYRGRYQYKIFIEDIQISKQEKEKQ 563 >gi|120603123|ref|YP_967523.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio vulgaris DP4] gi|120563352|gb|ABM29096.1| exonuclease RecJ [Desulfovibrio vulgaris DP4] Length = 580 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 170/593 (28%), Positives = 276/593 (46%), Gaps = 39/593 (6%) Query: 16 FRWVSLLGQEG-INRALAITQKHAIPDIV---------ARVLVNRNVSIDYAKDFLNPSI 65 RW+ EG + + ++ ++ I D++ + S+ +L+P + Sbjct: 11 KRWIYRPEVEGALPPSASLAERLGISDLLLRLLLRRGLS--------SVQDMDVYLSPQL 62 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 R L P +AA I I ++GDYDVDG S AL+ L V+ Sbjct: 63 RHLAPL-EEWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGVDVRH 121 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 ++PDR +GYG N +E+ +G +L++TVDCG + + A G+ V+V DHH Sbjct: 122 HLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPP 181 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA+A+ NP L GV F V+ + L + +D+ +LDLV Sbjct: 182 EVLPPAHAICNPRLACC--PCPALAGVGVAFFVMAAVNAALGER--SGRRYDMREVLDLV 237 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGP 303 AL T+ DVV L G NR V GL+ PG+ AL + + A + + + P Sbjct: 238 ALGTLADVVDLGGQNRILVKNGLLKIAEARRPGMAALKAVAGYNPSASLGAGQVVFGLAP 297 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+GE+ + +LL + + E LA +LD +N +RR+ E +LE+A+ + +Q Sbjct: 298 RINAAGRLGEAEMALQLLRARNHGEAAQLAQRLDAMNTDRRVEEDRILEEAKRQAESQAA 357 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 V+ G+ WHPG++G++A+R+ E + RP+ + E GSGRS+ FD+ Sbjct: 358 S---RMGFVLHGEDWHPGVIGIVASRIVEAYYRPTLIL-CTEGETLKGSGRSVSEFDLHA 413 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +S + + GGH AAG++++ L + F + T K+DG L Sbjct: 414 GLSQC--ADLFLGFGGHRQAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGDL 471 Query: 484 NASAV-NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 + ++ LE P+G GN PVFA P ++ +R H+++ + Sbjct: 472 GFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCGV 531 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 TL A A+R GEF + RG R+ + ++ + G+ LR+ D P Sbjct: 532 TLHAKAWRQS----GEFSDRLRGTRIRLAYTPRIDRYSGAASVDLRIRDWQPA 580 >gi|296274553|ref|YP_003657184.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter nitrofigilis DSM 7299] gi|296098727|gb|ADG94677.1| single-stranded-DNA-specific exonuclease RecJ [Arcobacter nitrofigilis DSM 7299] Length = 520 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 144/546 (26%), Positives = 255/546 (46%), Gaps = 40/546 (7%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L R++ + + P P D KA +R+ QAI ++E+I I GDYDVDG Sbjct: 12 ILSARHLKST------YSKLADIPP-PTGFKDIKKATKRVKQAILDNERITIVGDYDVDG 64 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S ++M+ F + IP+R GYG + + E + L+ITVD G ++ A Sbjct: 65 VVSTSIMVDFFRQVGYEVDYIIPNRFEHGYGLSTKISE---LIDSGLVITVDNGISACAA 121 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 Q ++ IDVI+ DHH V + AY+++NP + D +C A V + I + Sbjct: 122 TQILNDKNIDVIITDHHTVGDKIPNAYSIINPKQEDCNFPFKDICGAQVAWYFCASIKKE 181 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 L D ++ + LDL+ +A + D++P+ LN V GL + L Sbjct: 182 LNLD------INMTNFLDLLCIAIIADMMPMTSLNYTMVKNGLKKIETSNRVAISYLRST 235 Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 + SS I ++++G++I P IN+ GR+ ++++ L+S + +E L+ LN R++ Sbjct: 236 MRKSSFI-SDDIGFIIAPKINSAGRMDDASIALSFLLSSNFEEASEALDLLEELNNKRKI 294 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 ++ ++ +A+ ++ + IVV GD WH G++G++A++L F RP+F S + Sbjct: 295 LQESICLKAKYEIDMK------DKAIVVWGDNWHEGVIGIVASKLSHAFKRPAFIFSISD 348 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 G GS R+ ++ ++S A +L+ GGH AAG++++ + Sbjct: 349 -GIAKGSARANADINLHTIISEAQH--LLLGFGGHKNAAGISIKIEHLDEFKAIINSTLS 405 Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525 L P G L+ S+V++ +D++E PYG N P+F N K+ + Sbjct: 406 KASKELYIEPT--TLGELDISSVDLEFMDIIEMFEPYGLENHKPIFKISNAKVIKSELFG 463 Query: 526 --LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 HL++ + D +AI F + + + + + N +RG Q Sbjct: 464 KEKNHLKLYL-NVDGYDFEAIKF---------YSEKIDKNSVDMIISINKNEFRGDITPQ 513 Query: 584 LRVLDA 589 + D Sbjct: 514 FLIQDF 519 >gi|307746990|gb|ADN90260.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni M1] Length = 523 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 146/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 IEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A + D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMSKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFVIKEI 522 >gi|153952383|ref|YP_001397298.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. doylei 269.97] gi|157414349|ref|YP_001481605.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 81116] gi|152939829|gb|ABS44570.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. doylei 269.97] gi|157385313|gb|ABV51628.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni 81116] gi|315931278|gb|EFV10247.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 327] Length = 523 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 146/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A + D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMSKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFVIKEI 522 >gi|46579317|ref|YP_010125.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio vulgaris str. Hildenborough] gi|46448731|gb|AAS95384.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio vulgaris str. Hildenborough] gi|311233144|gb|ADP85998.1| single-stranded-DNA-specific exonuclease RecJ [Desulfovibrio vulgaris RCH1] Length = 571 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 170/593 (28%), Positives = 275/593 (46%), Gaps = 39/593 (6%) Query: 16 FRWVSLLGQEG-INRALAITQKHAIPDIV---------ARVLVNRNVSIDYAKDFLNPSI 65 RW+ EG + + ++ ++ I D++ + S+ +L+P + Sbjct: 2 KRWIYRPEVEGALPPSASLAERLGISDLLLRLLLRRGLS--------SVQDMDVYLSPQL 53 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 R L P +AA I I ++GDYDVDG S AL+ L V+ Sbjct: 54 RHLAPL-EEWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGVDVRH 112 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 ++PDR +GYG N +E+ +G +L++TVDCG + + A G+ V+V DHH Sbjct: 113 HLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPP 172 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA+A+ NP L GV F V+ + L + +D+ +LDLV Sbjct: 173 EVLPPAHAICNPRLACC--PCPALAGVGVAFFVMAAVNAALGER--SGRRYDMREVLDLV 228 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGP 303 AL T+ DVV L G NR V GL+ PG+ AL + + A + + + P Sbjct: 229 ALGTLADVVDLGGQNRILVKNGLLKIAEARRPGMAALKAVAGYNPSASLGAGQVVFGLAP 288 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+GE+ + +LL + E LA +LD +N +RR+ E +LE+A+ + +Q Sbjct: 289 RINAAGRLGEAEMALQLLRARKHGEAAQLAQRLDAMNTDRRVEEDRILEEAKRQAESQAA 348 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 V+ G+ WHPG++G++A+R+ E + RP+ + E GSGRS+ FD+ Sbjct: 349 S---RMGFVLHGEDWHPGVIGIVASRIVEAYYRPTLIL-CTEGETLKGSGRSVSEFDLHA 404 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +S + + GGH AAG++++ L + F + T K+DG L Sbjct: 405 GLSQC--ADLFLGFGGHRQAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGDL 462 Query: 484 NASAV-NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQD-SE 539 + ++ LE P+G GN PVFA P ++ +R H+++ + Sbjct: 463 GFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCGV 522 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 TL A A+R GEF + RG R+ + ++ + G+ LR+ D P Sbjct: 523 TLHAKAWRQS----GEFSDRLRGTRIRLAYTPRIDRYSGAASVDLRIRDWQPA 571 >gi|86153964|ref|ZP_01072166.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842502|gb|EAQ59715.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni HB93-13] Length = 523 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 147/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + V+ + Sbjct: 119 IEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYVIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A + D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMSKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFVIKEI 522 >gi|86152367|ref|ZP_01070577.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 260.94] gi|88597746|ref|ZP_01100979.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 84-25] gi|315123640|ref|YP_004065644.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840664|gb|EAQ57916.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 260.94] gi|88190050|gb|EAQ94026.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 84-25] gi|284925331|gb|ADC27683.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni IA3902] gi|315017362|gb|ADT65455.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315928432|gb|EFV07744.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 523 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 148/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A V D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513 Query: 581 RCQLRVLDA 589 Q V + Sbjct: 514 TPQFVVKEI 522 >gi|33601279|ref|NP_888839.1| single-stranded-DNA-specific exonuclease [Bordetella bronchiseptica RB50] gi|33575714|emb|CAE32792.1| single-stranded-DNA-specific exonuclease [Bordetella bronchiseptica RB50] Length = 522 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 164/511 (32%), Positives = 250/511 (48%), Gaps = 23/511 (4%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME---KF 145 I ++++I DYD DGA + A+ +R LS + + +P+R GYG +P+++E + Sbjct: 26 IEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRH 85 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 +IITVD G S D + A GI V++ DHH A A+VNPN+ G Sbjct: 86 RRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFG 145 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAY 263 HL GV+F +++ + LR+ + L +L DLVAL TV DVV L NR Sbjct: 146 SKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLL 205 Query: 264 VVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRLL 321 V +GL R + PG++AL + +LG+ +GP INA GR+ + +LG L Sbjct: 206 VTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACL 265 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 +DD + +A +LD +N+ RR +E+ M +QA A + D + + V WH G Sbjct: 266 TTDDEAQALEMARELDNINRERRTIEAEMRDQALA--AMEAPDAAAGATVCVFDPGWHQG 323 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGG 439 +VGL+A+RLKEKF RP+ A + + + GSGRSI + + G++ K GG Sbjct: 324 VVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGG 383 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGLT+ +F F + P+ + DG L + N + +L+ Sbjct: 384 HAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQ- 442 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +GAG P+F ++S R+V HL++ E + + AI F Q Sbjct: 443 QVWGAGFAAPLFLDE-FTVRSQRLVGGKHLKLALE-RGHQRFDAIWFGHD---------Q 491 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S +R+ L N W G QL + A+ Sbjct: 492 SLPERIQAAYRLEQNIWNGMVSVQLVIEHAA 522 >gi|255323579|ref|ZP_05364709.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae RM3277] gi|255299293|gb|EET78580.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae RM3277] Length = 535 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 146/548 (26%), Positives = 259/548 (47%), Gaps = 37/548 (6%) Query: 52 VSIDYAKDFLNPSI-RLLM------PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 ++ + K+ LN + + P P L D K A RI +AI +EKI++ GDYDVD Sbjct: 14 LNKEKIKELLNQRFEKDIHKKLSEIPTPDALKDVFKGAERIKRAIERNEKIVVVGDYDVD 73 Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 G + +M F V + IP+R DGYG NP ++E+ + A LI+TVD G ++ Sbjct: 74 GVIASVIMAEFFDDLGVSEYFVRIPNRFSDGYGLNPQIVEEIAD--ASLIVTVDNGISAN 131 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 DA Q +GID+I+ DHH AYA++NP + D +C A V + ++ + Sbjct: 132 DAAQICKQKGIDLIITDHHMPPDVLPEAYAIINPKQKDCPFPNVEICGAQVAWYLVGALK 191 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + R + +D+ LDL+A+A + D++ L LNR V G+ P A+ Sbjct: 192 DVCRIN------YDMGKFLDLLAIAIIADMMELRDLNRILVKLGVNRLNSSRRPAFTAIK 245 Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 + +++ ++I P IN+ GR+ ++++ L + + N +R Sbjct: 246 QLYGKDK-FECDDISFLIAPLINSSGRMDDASVSFEFLRAKSLDRACECLDTIVSFNNSR 304 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 + E + E + V + +IV G WH G++G++A+RL ++F +P+ S Sbjct: 305 KEEERTLFECSLKDVR------EDEHIIVTWGRGWHEGVIGIVASRLAKQFKKPAIVFS- 357 Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 ++ + GS RS+ DI ++ A E +L GGH AAG+ ++ N + Sbjct: 358 IDENRAKGSARSVGKLDILSLI--ASHENLLAGYGGHKGAAGIVIDPANLEAFKNAINSS 415 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 ++ + + G + A V+ L+++LE PYG NP P+F + +++ ++ Sbjct: 416 C-MLMDLHEFSAFDEPLGEIEAGEVDFELLEILEHFEPYGQKNPRPLFEIKSAVVKNKKL 474 Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 + HL++ + +D + L+A+ F P G+ + + + N +RG Sbjct: 475 IGREQNHLKLILQ-KDGKCLEALFFNFTREP-------HAGESIDLVFSVSKNSFRGLVT 526 Query: 582 CQLRVLDA 589 QL V + Sbjct: 527 PQLLVKEI 534 >gi|307722057|ref|YP_003893197.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurimonas autotrophica DSM 16294] gi|306980150|gb|ADN10185.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurimonas autotrophica DSM 16294] Length = 529 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 157/522 (30%), Positives = 267/522 (51%), Gaps = 31/522 (5%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +P+P +LTD KAA++I +A+ N+++I + GDYDVDG +S A+M+ F IP Sbjct: 31 IPNPELLTDASKAAKKIAEAVQNNKRITLVGDYDVDGVSSTAIMVDFFKQIPYPLEAIIP 90 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R DGYG +P+++++ A L+ITVD G ++ +A + + I++I+ DHH Sbjct: 91 NRFTDGYGVSPTVLQRV---DADLVITVDNGISAIEAAEICKQRDINLIITDHHTPCEIL 147 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 AYA+V+P +C A V +L+L L+ + L D D+ LD++A+A Sbjct: 148 PDAYAIVDPKLPTCNYPFKEICGAEVAWLLLGLVKKELALD------IDMKQFLDILAIA 201 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + D++PLI +NR V +GL P + + +N S IT+E++ + I P IN+ Sbjct: 202 VIADIMPLIDINRTLVKEGLKQLMHSSRPSSIVIRDFLN-KSKITSEDIAFNIAPRINSA 260 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ ++++ + D+ L LN R+ E+ ++A A V + Sbjct: 261 GRLEDASIALDFYTAPDTHTAYKQFELLGQLNDLRKATEAQTTQEAIASVN------EDD 314 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 VIVV G+ WH G+VG++AARL +KFGRP+ +S +++ + GS RSI +I +++ Sbjct: 315 KVIVVSGENWHEGVVGIVAARLVDKFGRPAIVLSIKDE-EAKGSARSIGDVNIYELIKE- 372 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E +L K GGH MAAGL + + A +P P +I G+L + + Sbjct: 373 -NEHLLTKFGGHKMAAGLGLHVKDIEAFTKAINTSAQK-IPQDDFIPKEQISGILASEDI 430 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES--QDSETLQAI 544 + L+ +LE P+G N P F + ++ SI+++ +H ++ +T++ I Sbjct: 431 DTELLALLEQFEPFGEANLRPTFLIKDAEVVSIKLMGADKSHSRIEVRQHPHQRKTIEII 490 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 AFR K++ + + N + G QL V Sbjct: 491 AFR-------RVFEMPVDKKITCSYSVAKNEFNGRVSAQLLV 525 >gi|217967983|ref|YP_002353489.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus turgidum DSM 6724] gi|217337082|gb|ACK42875.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus turgidum DSM 6724] Length = 823 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 152/579 (26%), Positives = 266/579 (45%), Gaps = 30/579 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 RWV L +E + + +K I ++AR+L+NR +S AK FLNP I L DP Sbjct: 2 RRWVFL-FEENKGQEEVLARKLGISSLLARLLLNRGISEPSKAKKFLNPKIEDLY-DPFT 59 Query: 75 -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D +KA +++ KI++FGDYDVDG + LM R LSH + + Y+P R+ + Sbjct: 60 YFPDLEKAIDFLIKLRNAKRKILVFGDYDVDGITATTLMYRVLSHWGWDVSFYVPHRLDE 119 Query: 134 GYGPNPSLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 GYG ++K +++ L+ITVDCG S ++Y G++VI+ DHH + IP Sbjct: 120 GYGLKEKSVKKALSQNEFIGLLITVDCGIKSKKEVEYLKKNGVEVIITDHHIPEEGSIPE 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 LV L++ ++ GV F L + + +D L+LV L T+ Sbjct: 180 ALLVLDPYLNN-YPYPYMAGVGVAFKFLKALGDAIGKDIYKEKGV-----LELVTLGTLG 233 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGG 309 D++ L NR V GL G++ LI +V ++ I+++++ + I P INA G Sbjct: 234 DLMELKDENRVLVRYGLEKILNSDLVGVRTLIRKVGLDKNTFISSKDIIFNITPRINAIG 293 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R E RL ++++ +E E+L KLD N+ R+ + E A+ + + DI+ Sbjct: 294 RFKEVEEAIRLFLTENVEEAEILFDKLDEFNRKRKEEVERVYEMAKEMLREE--DIENNK 351 Query: 370 VIVVEGDRWHPG---IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + + W ++G++A+ L E++ P F + +E + SGR +E ++ + VS Sbjct: 352 AVFLYNSLWGRDVGGVMGIVASMLVEEYNVP-FFLGRKEGEFIVFSGRGVEDVNLFEFVS 410 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 L+ GGH A G ++ ++ + + A+ I L TP KID + Sbjct: 411 KL--SDYLINFGGHKGAVGFSLFEKDYEDFKNSAVRLANEIWKELDFTPKVKIDAEIPLD 468 Query: 487 AVNIA----LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL-QMTFESQDSETL 541 + + L+ P+G GN P F + + + ++ + L Sbjct: 469 KIKSENIGKFLSELDMLSPFGPGNEEPRFKINSTVIAYFEKMGNGGRYKIKIGDISGKIL 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 F + + E ++ + + + + ++G + Sbjct: 529 STPIFSLG---IEEEALKESPQTVDIVLRIEKEGYQGRE 564 >gi|57169020|ref|ZP_00368148.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli RM2228] gi|57019565|gb|EAL56255.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli RM2228] Length = 523 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 150/549 (27%), Positives = 273/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +AI +EKI I GDYD Sbjct: 9 IRKILASR------FEKDLHTKLCDL-PLPCCLKDIYKAANRIKEAIDKNEKIAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 ++A + + ID+I+ DHH + A+A++NP + D +C A V + ++ + Sbjct: 119 FEAAKLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDFPDIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A V D++ L LNRA V +G+ + KA+ Sbjct: 179 KEVCKLK------YDMGKFLELLAIAIVADMMELRDLNRALVRRGIECINKSKRVAFKAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 ++ +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KQYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDLDKASAYLEQIISFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + +++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLSQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 + + GS RS+ DI ++S A IL GGH AAGL+++ +F + +K Sbjct: 346 QNDQ-RLKGSARSVGKIDILALISKANF--ILSNYGGHKGAAGLSLDLDSFEKFKTIIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L+ + ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECMEISQSEFL-DTDEILGILDPNEIDFEMLEILESFEPFGHKNPRPFFILENLYVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 + HL++ ++D++T++A+ F P + + + G + N +RG Sbjct: 462 FLGKDEKHLKLIL-TKDNKTIEALFFNFDKEP-------QLYENISLLGSISKNEFRGLA 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFIIKEI 522 >gi|57236940|ref|YP_178055.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni RM1221] gi|86150556|ref|ZP_01068780.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni CF93-6] gi|218561721|ref|YP_002343500.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165744|gb|AAW34523.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni RM1221] gi|85839008|gb|EAQ56273.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359427|emb|CAL34209.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315057469|gb|ADT71798.1| Single-stranded-DNA-specific exonuclease recJ [Campylobacter jejuni subsp. jejuni S3] Length = 523 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 148/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A V D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513 Query: 581 RCQLRVLDA 589 Q V + Sbjct: 514 TPQFVVKEI 522 >gi|205355768|ref|ZP_03222538.1| putative single stranded DNA specific exonuclease [Campylobacter jejuni subsp. jejuni CG8421] gi|205346545|gb|EDZ33178.1| putative single stranded DNA specific exonuclease [Campylobacter jejuni subsp. jejuni CG8421] Length = 523 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 148/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A V D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMV 513 Query: 581 RCQLRVLDA 589 Q V + Sbjct: 514 TPQFVVKEI 522 >gi|298243930|ref|ZP_06967737.1| single-stranded-DNA-specific exonuclease RecJ [Ktedonobacter racemifer DSM 44963] gi|297556984|gb|EFH90848.1| single-stranded-DNA-specific exonuclease RecJ [Ktedonobacter racemifer DSM 44963] Length = 606 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 185/627 (29%), Positives = 279/627 (44%), Gaps = 64/627 (10%) Query: 9 VECSI--SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65 + S S W Q + + + I A++L NR + + FL Sbjct: 1 MASSANFSSSTWDVFP-QLSAEQFKQLGTRTQYERIRAQLLYNRGIEETSKMRFFLEAHY 59 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS---VN 122 L+ DP L D D+A RI QA+ E I ++GDYD DG S AL+ R L Sbjct: 60 ENLL-DPSKLIDMDRAVTRIQQALAEREHITVYGDYDADGVTSSALLYRALRTLKHPEAP 118 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 + +IP R+ DG G N ++ G LIIT DC S+ + ++YA GIDVI+ DHH Sbjct: 119 LSFHIPHRLNDGCGLNLHALDMLKARGTTLIITTDCASSDVEQVEYARTLGIDVIITDHH 178 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 + E AYA+VNP R D G+ +LC AG+ F ++ +YR R+ D LL Sbjct: 179 RPPEELPRAYAMVNPWRPDCEYGERYLCGAGIAFKLVQALYRAYRRS-----VEDAQDLL 233 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMI 301 DLVA+ TV D+ PL+G N GL PGL LI R + I ++ + I Sbjct: 234 DLVAIGTVADIAPLLGENHTLTRLGLRKLNHTQKPGLLELIRRSTLQMGHIRERDIAFAI 293 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 P INA GR+ E+++ LL +DD+ E +A +LD LNQ R+ ++ + TQ Sbjct: 294 APRINAAGRMKEASIAFNLLTTDDTHEATRIAAELDSLNQGRQQETEELMRNVRTQAQTQ 353 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFD 420 + VI+V G+ WH GI+GL+A +L E+ +P +S GS RS + F+ Sbjct: 354 S----ELPVILVRGEDWHEGIIGLVAGKLAEEVQKPVLVLSDNHATSLSRGSARSPKDFN 409 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN-------------- 466 I + + +G + GGHA AAG T+++ + +L + N Sbjct: 410 I--IEALRGFDGTFERYGGHAQAAGFTLQQASIEKLHQHLIAWKENGGESVPAQIEGTQL 467 Query: 467 -----------IVPALITTPVFKIDGV---LNASAVNIALIDMLESAGPYGAGNPNPVFA 512 I P ID L+ +N L + P+GAGNP PVF Sbjct: 468 PDQTGLVVESTQESEEIPLPPRMIDLEFNHLHLQDLNHELYKEIHQLAPFGAGNPEPVFK 527 Query: 513 FPNHKLQSIRVVN--LAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 + ++S + +L + E + + T LQ + F ++++ Sbjct: 528 MKHLIIKSKWLSGREKQNLSLRLEQKGARTQLQG----TFVRGAAHFESLREVTQVNIIF 583 Query: 570 HLCVNYWRGSKRC----QLRVLDASPV 592 HL V +L++LD P+ Sbjct: 584 HLEVYE----DSIGPSTRLKLLDIEPI 606 >gi|257466534|ref|ZP_05630845.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium gonidiaformans ATCC 25563] gi|315917689|ref|ZP_07913929.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium gonidiaformans ATCC 25563] gi|313691564|gb|EFS28399.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium gonidiaformans ATCC 25563] Length = 842 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 149/580 (25%), Positives = 277/580 (47%), Gaps = 34/580 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + + +K AI IV ++ RN+S +P +L Sbjct: 5 KWIYQNYKYYPQKIE---KKEAIHSIVYSIMKERNLSHQE----------NFNTNPFLLK 51 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D ++A + +A + I I+GDYDVDG SV+L LS YIP R +GYG Sbjct: 52 DMEEAVSLLQEAKKKKQTIWIYGDYDVDGITSVSLCYLALSELGYEVEYYIPLR-DEGYG 110 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N ++ N+G +++ITVDCG S + +A + G+ +IV DHH+++ E A A++N Sbjct: 111 LNQEALQSIYNQGGKIVITVDCGIVSSKEVDFANSLGMTMIVTDHHELQGELPKAAAVIN 170 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P R +++ L G F ++ ++ + ++ D+VAL T+ D+VPL Sbjct: 171 PKRKENIYLFPSLAGVGTAFFLITALFEKEGKRK------EITKYFDIVALGTIADIVPL 224 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNIS---SPITAENLGYMIGPSINAGGRIGE 313 I NR V +GL + + GL+ L++R+ +A ++G++I P NA GR+ + Sbjct: 225 IEDNRILVQQGLSLLAKSQWTGLRILVKRLFPDYETHHFSAYDVGFIIAPIFNAAGRLED 284 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + RL + DS++ L N +RR ++ +L+ ++ + ++ + IV+ Sbjct: 285 AKSSVRLFLEKDSKKANEQIDYLIQNNLDRRAVQEKILQACLEEISQK--KLEDKNSIVI 342 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + +H G++G++A++L ++F +P+ + +G S RSI G +I + S Sbjct: 343 AREGFHHGVIGIVASKLVDRFYKPTIIMEIKPNEGIATASCRSISGINI--VESLEAVSH 400 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L++ GGH+ AAG ++ N + + F+ + + ITT I L + L Sbjct: 401 LLLRYGGHSGAAGFSILIENIAKFYEEFEAILEDKISKEITTRKLNITKELLPFQIQYPL 460 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYG 550 + ++ P+GA NP P+F+ + KL IR++ H+ D+ + F+ + Sbjct: 461 LHDMKYLEPFGASNPAPIFSLKHCKLDKIRLIGADKKHIMCNIHHGDTIFWNCVWFQAFD 520 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + V HL + +RG + ++ + D Sbjct: 521 IYEELLYI----QEVDVAFHLKLETYRGRYQYKIFIDDIQ 556 >gi|118475638|ref|YP_892873.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter fetus subsp. fetus 82-40] gi|118414864|gb|ABK83284.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter fetus subsp. fetus 82-40] Length = 530 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 149/553 (26%), Positives = 258/553 (46%), Gaps = 35/553 (6%) Query: 52 VSIDYAKDFLNPSIRLLM-------PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 + ++ LN + P P L D KAA RI AI N+E I I GDYDVD Sbjct: 2 LDKTEIRNLLNKRFSNDLHKKLSEIPLPCELKDTYKAAERIKTAIQNNELIAIVGDYDVD 61 Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 G S A+M FL+ S + + IP+R DGYG N ++ + E LIITVD G ++ + Sbjct: 62 GVVSTAIMAEFLTDMSTDFIIRIPNRFKDGYGLNSDIVNEL--ESVALIITVDNGISANE 119 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 A +GID+I+ DHH AYA++NP + + +C A V + ++ + Sbjct: 120 AADLCAKKGIDLIITDHHMPPQILPQAYAIINPKQPECTFPNIEICGAQVAWYLVGALKE 179 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 + N +D+ +DL+ALA + D++ L LNR V G+ +A+ Sbjct: 180 VCSLKN-----YDMGKFIDLLALAIIADMMELRDLNRILVRLGITRINSSKRACFEAIKC 234 Query: 285 RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRR 344 +++ ++I P IN+ GR+ ++++ + L S E + N +R+ Sbjct: 235 FYGKDK-FEFDDISFLIAPLINSAGRMDDASVSFKFLRSKTIDEANSYLDMITCFNNSRK 293 Query: 345 LMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 E A+ E + V +IV G+ WH G++G++A+RL +++ +P+ S Sbjct: 294 EQEKALFESSIKDVN------DNEDIIVTWGNEWHEGVIGIVASRLAKRYKKPAIVFS-I 346 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 + + GS RS+ FDI ++ A +E +L GGH AAGL +E N Sbjct: 347 DGCRAKGSARSVGKFDILALI--ASQEKLLCGFGGHKGAAGLVIETNNLDEFKHAVNNSC 404 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + ++ G ++ +A++ L+++LE PYG NP P+F + K+++ + + Sbjct: 405 FLQ-DLYDFSGSDEVLGEIDHNAIDYELLEILEYFEPYGQRNPRPLFELKSAKVKNTKFI 463 Query: 525 NL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRC 582 HL++ + + ++ +AI F TP G + + + N +RG Sbjct: 464 GKEENHLKLILQ-KGGKSYEAIFFNYDYTP-------HVGDNIDLLVSVSKNSFRGLITP 515 Query: 583 QLRVLDASPVEGH 595 QL + + ++ Sbjct: 516 QLLIKEIYELKNQ 528 >gi|283956206|ref|ZP_06373691.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 1336] gi|283792360|gb|EFC31144.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 1336] Length = 523 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 145/549 (26%), Positives = 270/549 (49%), Gaps = 37/549 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A + D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIIADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 ++ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNKEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 ++ HL++ +++++T++A+ F P + + + G + N +RG Sbjct: 462 LLGKDEKHLKLIL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGLV 513 Query: 581 RCQLRVLDA 589 Q + + Sbjct: 514 TPQFVIKEI 522 >gi|92115123|ref|YP_575051.1| exonuclease RecJ [Chromohalobacter salexigens DSM 3043] gi|91798213|gb|ABE60352.1| exonuclease RecJ [Chromohalobacter salexigens DSM 3043] Length = 599 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 181/577 (31%), Positives = 260/577 (45%), Gaps = 25/577 (4%) Query: 34 TQKHAIPDIVARVLVNR-NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS 92 Q + ++ ARVL R N ++PS+R L P L D +AA RI QA+ Sbjct: 29 AQAAGLSELQARVLAGRLNAYAGDIAPLVDPSLRYLTH-PERLQDARRAAERIAQAVAEG 87 Query: 93 EKIMIFGDYDVDGAASVALMMRFLSHCS----VNANMYIPDRIVDGYGPNPSLMEKF--I 146 E I I DYDVDG S +++R L+ + I RI DGYG + L+E+ + Sbjct: 88 EHIGILTDYDVDGITSHVVILRTLNELFGVPLHKLHSLIGHRIFDGYGISLPLVERTLAL 147 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNRLDDLS 204 + L+IT DCGS+ + G+DV+V DHH + + P AYA VNP R D Sbjct: 148 SPRPSLVITADCGSSDEPRIARLHEAGLDVVVTDHHALPASGPPASAYATVNPTRADCDY 207 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKV-PLNFDLLSLLDLVALATVCDVVPLIGL--NR 261 + V +L + L +L + P L L VAL TV D V L NR Sbjct: 208 PDPTIAGCMVAWLTMSLTRSVLIEQGVASPSTPKLSPWLSYVALGTVADCVSLGDSPANR 267 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRIGESNLGSRL 320 A V GL + R + + ER+ S E L + +GP INA R+ + Sbjct: 268 AVVSHGLTLINRMEAACWRVMAERLGTDSVPFDAETLAFQMGPRINARSRLDDPYAALHF 327 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 +++ D LD NQ+R+ +ES M+E+A + L + AS IVV + H Sbjct: 328 MLAADDATARRHLEVLDTDNQSRKAIESDMVERARSLALEALA--EGASAIVVFLEDGHA 385 Query: 381 GIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKG 437 G+ G++A+RL + FGRP+ ++ G GSGRSIEG + + A E L + Sbjct: 386 GVQGIVASRLVQAFGRPTLVLTPAAAAGMLTGSGRSIEGLHLRDALQRAHELAPEALPRF 445 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGH AAG+ V R D F + P DG L + +++A +D L Sbjct: 446 GGHRGAAGVGVPRERLTAFRDAFLTAVEEQLGGRDLFPYVLTDGALEPAQLSLASVDELA 505 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGE 555 PYG P+F +++ +R V HL + S + +AI FR GE Sbjct: 506 RLAPYGREFDAPLFEGE-FRIEQLRAVGADGNHLMLEL-SMGPVSHRAIWFRALTP--GE 561 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G R+H L N W+G + QL + A PV Sbjct: 562 VPAFGPGDRLHCAYKLARNRWKGRESLQLMIEHAEPV 598 >gi|149200058|ref|ZP_01877083.1| single-stranded-DNA-specific exonuclease RecJ [Lentisphaera araneosa HTCC2155] gi|149136816|gb|EDM25244.1| single-stranded-DNA-specific exonuclease RecJ [Lentisphaera araneosa HTCC2155] Length = 572 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 265/581 (45%), Gaps = 33/581 (5%) Query: 20 SLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCD 79 + I + + A VL NR++ A F N S+ L DP D Sbjct: 10 WYPKEVENEDLSDIQGRFQLSLPAATVLANRSLLKKNADCF-NASLASL-SDPFRFPDMQ 67 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 K RI ++I +EKI++ GDYD DG S L+ + +++++I +R+ DGYGP P Sbjct: 68 KTVERIFESIQKNEKIIVHGDYDTDGVTSSTLLNWVIKSYGADSSVFISNRLHDGYGPTP 127 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 + M+ I GA L+I+ DCG TS++A YA G+D I+ DHH + AYA++NP Sbjct: 128 TTMQNQIEAGASLVISTDCGITSFEAADYAHENGLDFIITDHHNPADQLPKAYAIINPRI 187 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 +L L GV F + + + DL + LDLVAL T+ D PLIG Sbjct: 188 TTELIDLYSLAGVGVSFKLCHALLK-FGSKIGKKATIDLRNGLDLVALGTIADSCPLIGE 246 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 NRA V GL + PG++AL E + + ITA ++ I P INA GR+G+ + ++ Sbjct: 247 NRALVKNGLKLLNVNPRPGVRALYEATTLDTHITAADISRKISPKINAAGRVGDPMVSAK 306 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL S+ E L +L N+ RR E + +A Q +++V G WH Sbjct: 307 LLASNSIHESRQLVGQLKNFNRIRRNAEKSAYMEALQIAKEQAKSS--PPLLLVVGPDWH 364 Query: 380 PGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 PG++GL++ +L + FG PS +S + + +GSGRS +G ++ + +L G Sbjct: 365 PGVIGLISTKLTKHFGLPSVVLSKDKNPDELLGSGRSCDGINL--LEGLKHCSDLLNNFG 422 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA--LITTPVFKIDGVLNASAVNIALIDML 496 GH MAAGL++ N + + + V DG + +N I L Sbjct: 423 GHPMAAGLSLAVNNLEAFREKIIELLESDVLDKVEKKRKHQYYDGEFSFQDLNEQFIGDL 482 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH------LQMTFESQDSETLQAIAFRVYG 550 E P+G GN PVF F N +++ H L + IAF Y Sbjct: 483 ERMEPFGNGNDAPVFLFKNVQIRDT------HHPISAVLSGFVMDKFGTK---IAFTYYT 533 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRG--SKRCQLRVLDA 589 ++ GK + +R +K C+L + + Sbjct: 534 PF--DYSEFEPGKLYSIIATP----YRNFENKTCRLLLHEV 568 >gi|157165222|ref|YP_001467773.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter concisus 13826] gi|157101516|gb|EAT97331.2| single-stranded-DNA-specific exonuclease RecJ [Campylobacter concisus 13826] Length = 535 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 151/538 (28%), Positives = 256/538 (47%), Gaps = 31/538 (5%) Query: 57 AKDFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR 114 A+ F N + L +P P L D K A RI +AI +E I I GDYDVDG S ++ Sbjct: 23 ARRFCNDIHKKLSEIPTPSALKDIYKGANRIKEAIERNEHIAIVGDYDVDGVVSSVILAE 82 Query: 115 FLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG 173 F V N + IP+R DGYG NP ++++ + LIITVD G ++ DA +G Sbjct: 83 FFDDLGVKNYLVKIPNRFKDGYGLNPEIIDELAS-DVSLIITVDNGISANDAAAICKEKG 141 Query: 174 IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP 233 ID+I+ DHH + AYA++NP + D +C A V + ++ + + Sbjct: 142 IDLIITDHHMPPAVLPEAYAIINPKQEDCNFPNIEICGAEVAWYLVGAL------KDVCK 195 Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293 LN+D+ L+L+A+A + D++ L +NR V G+ + E Sbjct: 196 LNYDMSKFLELLAIAIIADMMELRDMNRMLVRMGICKLNASKRSAFCVIKEFYGKDK-FE 254 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 +++ ++I P IN+ GR+ ++ L + +E + N +R+ E + E Sbjct: 255 CDDISFLIAPLINSAGRMDDAMNSFNFLRAKSIEEAYDYLDTIIEFNNSRKEEERQLFEC 314 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 + V + VI+ G++WH G++G++A+RL + F +P+ S + G+ GS Sbjct: 315 SLKDVK------EDDEVIITWGEQWHEGVIGIVASRLAKHFAKPAIVFS-IDKGRAKGSA 367 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RS+ DI ++ A E +L GGH AAGLT+ N + + K + Sbjct: 368 RSVGKLDILSLI--ASHEDLLTSYGGHKGAAGLTLAPENLEKFKEEINKSCS-CLNMQEC 424 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531 ++ G + S ++ L+++LE PYG NP PVF N +++ R++ HL++ Sbjct: 425 KSSDELLGDIMPSEIDFELLEILEFYEPYGQKNPRPVFKIENAVVKNERLIGRDQNHLKL 484 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + +D++TL+A+ F G+ + V + N +RG QL + + Sbjct: 485 ILQ-KDNKTLEALFFNFTRH-------VRVGEMVDVIFCVSKNSFRGLVTPQLLIREI 534 >gi|94269309|ref|ZP_01291429.1| RecJ exonuclease [delta proteobacterium MLMS-1] gi|93451269|gb|EAT02160.1| RecJ exonuclease [delta proteobacterium MLMS-1] Length = 551 Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats. Identities = 169/559 (30%), Positives = 264/559 (47%), Gaps = 22/559 (3%) Query: 38 AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 IP+ V +L R + F+NPS+ L PDP +L A+R + + I+ Sbjct: 4 NIPESVVALLWRRGLRDPAALDAFVNPSLADL-PDPDLLKGMAPASRLLADWLAKGAPIV 62 Query: 97 IFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK--FINEGAQLI 153 I+ DYD DG + AL+ +L + IP R+ DGYG +P L+ + L+ Sbjct: 63 IYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRDGYGLHPHLLASVPVAAQRQPLL 122 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 ITVDCG T +A+ AT G VI+ DHHQ E A A++NP++ +L G Sbjct: 123 ITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAAAAVLNPHQAGCSFPCPNLAGVG 182 Query: 214 VVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 V F +L+ + R L + L LDLVAL TV D+V + G NR + GL V Sbjct: 183 VAFYLLMGLRRRLVEQGSHRAAELPRLKDFLDLVALGTVADMVKVTGANRILIRAGLEVL 242 Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 + PG AL I+ AE++ + + P +NA GRIGE + +LLI DD + Sbjct: 243 QGNQRPGPAALAAVAGITPG-YAEDISFSLAPRLNAAGRIGEPEIAFKLLICDDPGQAAA 301 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 LA +LD LN+ RR M + + + + D+Q +I+ ++WHPG++G+ A RL Sbjct: 302 LAGELDELNRQRRAMSDKIYQDVRQTISSNIADLQN--IILFAHEQWHPGVLGIAATRLA 359 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 ++ RP+ + G GSGRS+ G D+ V+ E +L GGHA A G+++ + Sbjct: 360 LEYDRPAILCALTN-GVAKGSGRSVAGLDLLAAVAGCRE--LLAGYGGHAAALGVSMPKE 416 Query: 452 NFGRLCDFFQKFAHNIVPALITTP-VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 + + + + +P +D A+ + P+G GNP P Sbjct: 417 VVAQFRERLNQQLISELPRARQERGEVDVDWFFADGAMEPGFTAAYQRLAPFGPGNPEPQ 476 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F ++ VV HL+ +++ D ++ AIAF L + G + T Sbjct: 477 FRIRG-RVGKATVVGSKHLRFSWQQAD-QSYNAIAFGRAD-----ALPLTSG-VVEFTFT 528 Query: 571 LCVNYWRGSKRCQLRVLDA 589 L N+++G QL+V + Sbjct: 529 LRRNFYQGRSSWQLKVSEL 547 >gi|237736662|ref|ZP_04567143.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium mortiferum ATCC 9817] gi|229420524|gb|EEO35571.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium mortiferum ATCC 9817] Length = 573 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 142/546 (26%), Positives = 263/546 (48%), Gaps = 20/546 (3%) Query: 49 NRNVSIDY-AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107 NR S + +F+NP I +P +I+ +EKI I+GDYDVDG Sbjct: 33 NRGFSDEKSVNEFINPEISDFR-NPFKFEKMASVVDKILAKKEKNEKIFIYGDYDVDGIT 91 Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 + +++ S ++ + YIP+R+ +GYG + ++ +L+ITVD G S + ++ Sbjct: 92 AAVFLVKVFSEIGIDVDYYIPNRMEEGYGLDKKAIDFMKKRNCKLVITVDTGVNSIEDVK 151 Query: 168 YATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227 YA + GI+VIV DHH+ ++ L+ +L D +L AGV V +Y L Sbjct: 152 YAESLGIEVIVTDHHKSTKDKEDEELLLLNPKLSDTYEFKYLSGAGVALKVAQGVYEKLN 211 Query: 228 QDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287 D L +D+V + TV DVVP++ NR + +GL + + GL L++ + Sbjct: 212 AD-----MGKLYQYMDIVMIGTVADVVPMVDENRIIIKEGLKILSKTKVKGLMYLLKYLK 266 Query: 288 I-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 + I ++ Y I P IN+ GRIG S +G+ + +D E+ + ++ N+ RR + Sbjct: 267 FQNKEINTTDVSYFISPLINSLGRIGVSKMGADFFLKNDEFEIYNIIEEMKKSNKKRREL 326 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 E A+ E+A+ K+ + D + + +WHPG++G++++RL K+ P ++ + Sbjct: 327 EKAIYEEADHKI--KKMDKKSLKCAFLYSKKWHPGVIGVVSSRLSVKYNMPIALVALRD- 383 Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 G S RS++G + F + LV+ GGH +A+G V++ N + F++ Sbjct: 384 NIGKASCRSVKGVSV--FNIFHTMKDKLVRFGGHDLASGFIVKQENLKEVERIFKENIDE 441 Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN- 525 + + KID L ++ L +ES P+G N +P+F + I+ Sbjct: 442 -IKVEQEEKILKIDMELPIEKIDENLFKAMESLAPFGLDNNHPLFIDKDLSFDYIKKFGV 500 Query: 526 -LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584 H + ++ + +AF + G + E ++++ ++ + + ++G + Q+ Sbjct: 501 NERHFNGIIK-KNGKNYHMVAFDM-GHKINE--LEAKIQKFDIVYYPEKVIYKGEEIIQI 556 Query: 585 RVLDAS 590 R+ D Sbjct: 557 RIKDIK 562 >gi|206901516|ref|YP_002251309.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus thermophilum H-6-12] gi|206740619|gb|ACI19677.1| single-stranded-DNA-specific exonuclease RecJ [Dictyoglomus thermophilum H-6-12] Length = 824 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 151/592 (25%), Positives = 265/592 (44%), Gaps = 30/592 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLI 74 RW+ L +E + ++ + ++AR+L+NR + AK FLNP I L DP + Sbjct: 2 RRWILL-FEENKGQEEVFAKEIGVSPLLARLLLNRGIKDSLQAKRFLNPKIEDLY-DPFL 59 Query: 75 -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D +KA +V+ + K++IFGDYDVDG + +M R LS+ + + YIP R+ + Sbjct: 60 YFPDLEKAMNFLVKLRDSKRKVLIFGDYDVDGITATTIMYRVLSNWGWDVSFYIPHRLEE 119 Query: 134 GYGPNPSLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 GYG ++K +++ L+ITVDCG S ++Y G++VIV DHH + IP Sbjct: 120 GYGLKEKSIKKALSQNEFVSLLITVDCGIKSRKEIEYLRKNGVEVIVTDHHIPEEGNIPE 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 AL+ N + ++ GV F L + + +D L+LV L T+ Sbjct: 180 -ALLVFNPYLNNYPYPYMAGVGVAFKFLKALGDFIGKDIYEEKGI-----LELVTLGTLG 233 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGG 309 D++ L NR V GL G+K LI +V + I +++ + I P IN+ G Sbjct: 234 DLMELKDENRILVKFGLEKFLNPDLVGIKTLIRKVGLDKNTIINTKDVIFNITPRINSIG 293 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R E RLL++D+ +E E+L KLD N+ RR + E A+ + + +I+ Sbjct: 294 RFKEVEEAIRLLLTDNVEEAEILCEKLDEFNRKRREEVERVYEIAKEMLREE--EIENNK 351 Query: 370 VIVVEGDRWHPG---IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + + W ++G++A+ L E++ P F + +E + SGR +E ++ +S Sbjct: 352 AVFLYNPLWGRDVGGVMGIVASMLVEEYNVP-FFLGRKEGDFVVFSGRGVEDVNLFDFIS 410 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 LV GGH A G ++ ++ K A+ + + TP KID ++ Sbjct: 411 NL--SSYLVNFGGHRGAVGFSLFEKDYEIFKINAIKLANELWKDVDFTPKVKIDAEISLD 468 Query: 487 AVNIA----LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL-QMTFESQDSETL 541 + + L+ P+G GN P F + + + ++ + L Sbjct: 469 KIKSENIGKFLSELDLLPPFGPGNEEPRFKISSTVIAYFEKMGNGGRYKIKIGDISGKVL 528 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 F + + E + + + + + ++G + + + E Sbjct: 529 STPIFSIG---IEEDAFKESPQTLDIILRIEKEGYQGREYFNFYLEEWREAE 577 >gi|148926844|ref|ZP_01810523.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni CG8486] gi|145844569|gb|EDK21676.1| putative single-stranded-DNA-specific exonuclease [Campylobacter jejuni subsp. jejuni CG8486] Length = 503 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 144/523 (27%), Positives = 260/523 (49%), Gaps = 30/523 (5%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +P P L D KAA RI +A+ +EK+ I GDYDVDG S +M F + + IP Sbjct: 8 LPLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIP 67 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R DGYG N ++ + LIITVD G + +A + + ID+I+ DHH + Sbjct: 68 NRFKDGYGLNAEIINEL---DVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVL 124 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 A+A++NP + D + +C A V + ++ + + + +D+ L+L+A+A Sbjct: 125 PDAFAIINPKQKDCDFPEIEICGAQVAWYLIAALKEVCKLK------YDMCKFLELLAIA 178 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 V D++ L LNRA V +G+ + +A+ + +N+G++I P IN+ Sbjct: 179 IVADMMELRDLNRALVRRGIDHINKSKRAAFRAI-KHYYQKDKFALDNIGFLIAPLINSA 237 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ ++++ L + D + ++ N++R+ E + E + ++ + Sbjct: 238 GRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLFEDSLNQI------DEND 291 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 S IVV G WH G++G++A+RL + F +P+F S E+ GS RS+ DI ++S Sbjct: 292 SCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNEEHL-KGSARSVGKIDILALISK- 349 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 IL GGH AAG+++ NF + + +K I + +I G+L S + Sbjct: 350 -TNSILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISESEFL-DTDEILGILEPSEI 407 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAF 546 + ++++LES P+G NP P F N +++ +++ HL++ +++++T++A+ F Sbjct: 408 DFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHLKLVL-TKENKTIEALFF 466 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 P + + + G + N +RG Q V + Sbjct: 467 NFDKEP-------ELNQNISLLGSISKNEFRGMVTPQFVVKEI 502 >gi|257461044|ref|ZP_05626142.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter gracilis RM3268] gi|257441418|gb|EEV16563.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter gracilis RM3268] Length = 526 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 146/531 (27%), Positives = 261/531 (49%), Gaps = 35/531 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +P P L D KAA RI AI +++I + GDYDVDG S +M F + + IP Sbjct: 26 IPLPCDLKDTYKAALRIKTAIEENQRIAVVGDYDVDGIVSTVIMSDFFNQIGAEYVIKIP 85 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R DGYG N ++ + E LIITVD G+++ +A + +GID+I+ DHH Sbjct: 86 NRFTDGYGLNSEIIGEL--EDVDLIITVDNGTSATEAAEICAQKGIDLIITDHHMPPPVL 143 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 AYA++NP + D +C A V + ++ + L +N+D+ S +D++ +A Sbjct: 144 PRAYAIINPKQPDCTFPNIEICGAQVAWYLVGALKETLG------VNYDMASSMDILIIA 197 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + D++ L +NRA + G+ KA+ + +++ Y I P IN Sbjct: 198 IIADMMELRDMNRALLRFGIKRLNSSNRACFKAI-KEHYFKKHFEFDDISYTIAPLINCT 256 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ ++ + L + + +E ++ +N +R+ E ++ ++ V Sbjct: 257 GRMDDATMSYNFLCAKNIREANHYLETINSINNSRKEEEKSLYDEIVKSV------DPND 310 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 +VIVV G +WH GI+G++A+RL + + +P+ S + + GS RSI FDI +++S Sbjct: 311 NVIVVWGPQWHEGIIGIVASRLSKTYKKPAIVFSVSDS-RAKGSARSIGKFDILELISS- 368 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID---GVLNA 485 + IL GGH AAG+ ++ L F++ + + + D G L+A Sbjct: 369 -QSEILTTFGGHKGAAGVGID----PALLQEFKRRVNERITPKDLSDFSAQDDLLGELDA 423 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQA 543 S ++ L+++LE PYG NP P+F + ++IR + H++M ++ +++A Sbjct: 424 SQIDFELLEILEFYEPYGQKNPRPLFCIKGARARNIREIGKEGKHIKMAL-DKNGGSVEA 482 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + F + G+R+ V + N +RG+ +L + + +P E Sbjct: 483 LFFNYD-------FLPRAGERVDVIFTISKNNFRGTITPELIIKELAPSES 526 >gi|163814891|ref|ZP_02206279.1| hypothetical protein COPEUT_01042 [Coprococcus eutactus ATCC 27759] gi|158449830|gb|EDP26825.1| hypothetical protein COPEUT_01042 [Coprococcus eutactus ATCC 27759] Length = 630 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 160/619 (25%), Positives = 280/619 (45%), Gaps = 61/619 (9%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 +W + + I +K I +VARV+ NR + D +LN L+ DP ++ Sbjct: 19 KWTIMSKRADFA---EIGRKFGIDPVVARVITNRGICGDDNINMYLNGG-ADLLHDPGLM 74 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-----------AN 124 D + R ++ + N +I I DYDVDG S +++ L + Sbjct: 75 KDLPEGCRIVMDKLENGSRIRIISDYDVDGVTSNYILLLGLRKVWAQIHGARPEECEIVD 134 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 IP RI DGYG L++ +G IIT D G +++ ++YA G+ VIV DHHQV Sbjct: 135 YDIPHRIHDGYGIKNRLIDAAKADGVDTIITCDNGIAAFEQIKYAKTIGMTVIVTDHHQV 194 Query: 185 KSEE----------IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL 234 +E PA A+++ R+D LC AGV + +YR+ D + Sbjct: 195 PYQENGDGTKTYTLPPADAVIDNQRVDCQYPFKGLCGAGVACKFIQYLYRLCGIDER--- 251 Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPIT 293 ++ +++ LAT CD++ L+ NR +V L + NPGL AL+ + IT Sbjct: 252 --EIQEFFEVLGLATNCDMMDLVDENRIFVKYALESLKDSRNPGLNALMRLSGKNEKKIT 309 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 +LG++IGP INA GR+G++ L+ ++ + E A +L +N +R+ M ++ Sbjct: 310 TYDLGFLIGPCINAAGRLGDARTSLEFLLEKNAAKAETKAAELIQINNDRKSMTENGVKL 369 Query: 354 AEAKVLTQCDDIQ-------QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 + + VIV H +VG++A++LKE + RP + E Sbjct: 370 ITKMLEDATIAGEIGDTATLADHVIVAYIPDVHESVVGIIASKLKEAYSRPVMIFTDSEH 429 Query: 407 -GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 G GSGRSIE +++ + +S + + GGHAMAAG ++E G L + Sbjct: 430 AGILKGSGRSIESYNMYEHLSRV--KSYFREFGGHAMAAGFSIESSRLGELRRVLNEQCA 487 Query: 466 NIVPALITTPVFKIDGVLNASAV---NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 + TP +ID + + ++ + + L PYG GN +F N ++ Sbjct: 488 --LTDEDITPKVRIDVGMPLQYLARQSMRITEQLYLLEPYGKGNRKALFGQANVPVRKAS 545 Query: 523 VVNLAH--LQMTFESQDSETLQAIAFR----------VYGTPLGEFLMQSRGKR--MHVT 568 ++ L++ + +++ ++AI F +G + ++ R + + + Sbjct: 546 ILGKNRNLLKLVLDIGENQYMEAIYFDPDEFVNNIKQWFGADECDKMLNGRPNKVVIDMV 605 Query: 569 GHLCVNYWRGSKRCQLRVL 587 + +N +R ++ Q+R+ Sbjct: 606 YYPEINEFRNTRNVQIRLE 624 >gi|94676928|ref|YP_588619.1| single-stranded-DNA-specific exonuclease RecJ [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220078|gb|ABF14237.1| single-stranded-DNA-specific exonuclease RecJ [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 575 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 166/570 (29%), Positives = 276/570 (48%), Gaps = 21/570 (3%) Query: 32 AITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 +I + IP ++ R+ + R + L L + +AA + +A+ + Sbjct: 14 SILDEINIPILLKRIYIQRGIKNP---RELELKTCYLFTN-AQFNGIQQAAILLTKALRD 69 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGA 150 IM+ GD+DVDGA S AL++ L V N I +R D YG N ++EK + GA Sbjct: 70 KLSIMVVGDFDVDGATSTALVILALKQMGVEKINFLILNRFKDSYGLNTRVVEKVASSGA 129 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 Q+I+TVD G +S+ A+ A +GI V+VIDHH A ++VNPN + +L Sbjct: 130 QIILTVDNGVSSHTAINLAVAKGIPVLVIDHHLPGQTLPNAVSIVNPNLKNCNFQSKNLA 189 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 + GV F +++ + L + N L L DLVAL TV D+VPL NR V + Sbjct: 190 SVGVAFYLMLALRMELCKSGWFDKNKIAVPKLAKLFDLVALGTVADMVPLDMNNRILVHQ 249 Query: 267 GLMVAR-RQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324 G+ + R PG++AL+E NI+ + I A +LG+ I P +NA GR+ + +L LL++D Sbjct: 250 GINLIRTGCCRPGIRALVEISNINLTKICASDLGFYISPRLNAAGRLQDMSLSVELLLAD 309 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIV 383 + ++A KLD LN+ RRL+E M QA + S +++ WH G++ Sbjct: 310 NLSTARIIAAKLDRLNKERRLIEQKMFIQALNLCKQIENTKNGIPSGLLLYHQNWHQGVI 369 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHA 441 G++A+++KE F RP ++ ++ GS RS+ I ++ +++ GGHA Sbjct: 370 GIIASQIKEFFYRPVIILAPADNFLLKGSCRSVPSVHIYNLLQILDQLYPNMMLNFGGHA 429 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 MAAGLT+E+ D F A+ ++ + + DG L ++I+ +L GP Sbjct: 430 MAAGLTIEQSKLSLFRDSFYSLANQLIKPSMLNKIIWSDGELVGKEISISTAKILREGGP 489 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQS 560 +G +P+F + + ++ HL++ + + + I F + L L Sbjct: 490 WGVEFTDPLFDGIFC-ILNKMLIKKVHLKIKLQDISNGLIIDGIIFNINKIIL---LSIK 545 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + L +NY + + QL + Sbjct: 546 TKTLYRIAYKLNINY--SNHQLQLLIQYIW 573 >gi|90413183|ref|ZP_01221179.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium profundum 3TCK] gi|90325874|gb|EAS42326.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium profundum 3TCK] Length = 481 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 157/483 (32%), Positives = 238/483 (49%), Gaps = 16/483 (3%) Query: 118 HCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176 N + IP+R+ DGYG +P ++ + GA++I+TVD G +S + A +G+ V Sbjct: 1 MLGCSNVDYLIPNRVEDGYGLSPEVVVQAEARGAEVIMTVDNGVSSIAGVAAAKAKGMQV 60 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--- 233 +V DHH E A A+VNPN LC GV F +++ + LR N Sbjct: 61 LVTDHHLQGRELPIADAIVNPNLDVCTFPSKSLCGVGVAFYLMLALRAELRSINWFEQKG 120 Query: 234 -LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS- 290 +L LLDLVAL TV DVV L G NR V +GL R + PG++ALIE N Sbjct: 121 IPVPNLAELLDLVALGTVADVVALDGNNRILVHQGLQRIRAGKCRPGIQALIEVANRDPA 180 Query: 291 PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM 350 + +LG+ +GP INA GR+ + + G LL+ + Q +A +LD LNQ R+ +E M Sbjct: 181 RLVTSDLGFALGPRINAAGRLDDMSFGVELLLCNHIQAARRMASELDGLNQTRKEIEHGM 240 Query: 351 LEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 E+A A + Q + WH G++G+LA+R+K+ + RP A + +G+ Sbjct: 241 KEEALAICERISFNQQDMPYGLALFQRDWHQGVIGILASRIKDLYHRPVIAFADAGEGEI 300 Query: 410 IGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI 467 GS RSI G + ++ G++VK GGHAMAAGLT+ F + Sbjct: 301 KGSCRSIPGLHMRDVLDLIDTRNPGMIVKFGGHAMAAGLTIPEDQLSGFSKAFDDIVRSQ 360 Query: 468 VPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA 527 + +F DG L A+ +NI ++L + GP+G P P F +L ++V Sbjct: 361 LDEDALKGIFLTDGELAANDLNIETAEVLRNGGPWGQQFPEPSFDGT-FRLLHQKLVGSK 419 Query: 528 HLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 HL+M E + AIAF V + + +++ + L VN +RG++ QL + Sbjct: 420 HLKMMVEPINGGSVIDAIAFNVDLKSWPD----ASVQQVDLVYRLDVNEFRGNRSVQLMI 475 Query: 587 LDA 589 Sbjct: 476 EHL 478 >gi|146329653|ref|YP_001209501.1| DNA exonuclease RecJ [Dichelobacter nodosus VCS1703A] gi|146233123|gb|ABQ14101.1| DNA exonuclease RecJ [Dichelobacter nodosus VCS1703A] Length = 556 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 165/553 (29%), Positives = 258/553 (46%), Gaps = 28/553 (5%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 +V + R + + +R L+P P + D +KAA+R++ AI E I+IFG Sbjct: 20 HALVRAIYAARVDNPEEVAK----PLRALLP-PDSVPDIEKAAQRLLTAIVQRESILIFG 74 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYDVDGA + AL + + + +IP+R GYG + K ++ L+ITVD G Sbjct: 75 DYDVDGATATALCVSVIEQLGGKVDYFIPNRQRHGYGLTVRGL-KTLSTLPALVITVDNG 133 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 S++A ++ + +++ DHHQ + A A+VNPNR + G+L GV F VL Sbjct: 134 IRSFEAAEWLQAHNVALVITDHHQTDTTLPRAQAVVNPNRQEHHY-LGNLSGVGVAFYVL 192 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-RQGNPG 278 +++ R L DL S LDLVAL TV D VPL NR V G+ R Q N G Sbjct: 193 LMLRR-LWYQQFGNFPVDLNSYLDLVALGTVADKVPLDRNNRILVAHGIARMRTGQSNLG 251 Query: 279 LKALIERVNISSPITAE-NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 ++ALI N + + ++ + + P +NA GR+ E + G LL+S D Q A L+ Sbjct: 252 IQALIAVSNQTPEMMTTRDIDFSLAPILNAVGRLSEMSEGVALLLSADWQTACDNAQYLE 311 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 N++R+ + + M QA ++ A + WH GI+G++AARL + RP Sbjct: 312 RFNRSRKALTNEMERQAALQIN------PDAVIASAYQADWHEGIIGIVAARLSQTLARP 365 Query: 398 SFAISFEEDG-KGIGSGRSIEGFDIGKM--VSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 + + +DG GS RSI G DI ++ + A ++ GGHAMAAG TV + + Sbjct: 366 ALVATQSDDGLGIKGSMRSIAGVDIHRLLIAAVADLPSDCIQFGGHAMAAGFTVLKECYP 425 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 L ++ + A + D L + ++ LE+ P+GAG P P F Sbjct: 426 LLLTALKQHFERQIGARVPEQPLYFDAELPIDLLQLSWAHFLENLEPWGAGFPPPQFCNR 485 Query: 515 NHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 + R + H ++ + + A F G + V L + Sbjct: 486 -FIVADCRALGAGHTRLVLREPINGQLFDATWFFHKED-------LPSGTAVKVVYQLEI 537 Query: 574 NYWRGSKRCQLRV 586 N + G +R L + Sbjct: 538 NRFFGDERLNLLI 550 >gi|260436018|ref|ZP_05789988.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. WH 8109] gi|260413892|gb|EEX07188.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. WH 8109] Length = 632 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 160/542 (29%), Positives = 265/542 (48%), Gaps = 20/542 (3%) Query: 53 SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112 S A+ FL P L P D ++A R+V A + E++ I GDYD DG S AL+ Sbjct: 41 STSEAESFLFPG--DLPPTRDHFPDLEQACTRLVTACRSRERVAICGDYDADGMTSTALL 98 Query: 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQ 172 +R L+ IP R+ +GYG NP ++++ ++G +L++TVD G + +AL+ A + Sbjct: 99 LRALAPLGAEPEPAIPSRMEEGYGLNPVMVQRLYDDGVRLLVTVDNGVAAREALELAASL 158 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 + VIV DHH + +E P AL++P + S L G+ +++ + +L + + Sbjct: 159 SMQVIVTDHHTIPAERPPMTALIHPATTPEGSPYRGLAGVGLAYVLAHAVADVLNKPEAI 218 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 + DL + TV D+ PL+G NR+++++GL R G++AL P Sbjct: 219 RVAR------DLFCIGTVADMAPLVGANRSWLLEGLNHLHRSECKGVQALQRLAGLGERP 272 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 +TAE++G+ + P INA GR+GE L LL ++D LA + D N+ RR + A+ Sbjct: 273 LTAEDIGFQLAPRINAVGRLGEPRLVVDLLTAEDPDSAMALARRCDDYNRQRRDLCDAIE 332 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 +A A V + D S +++ WH G++G++AARL E++ RP+ ++ + DG Sbjct: 333 AEAVALVEAESSD-ALPSFLLLAQSHWHHGVIGIVAARLMERYHRPTALLAGDGDGSLRA 391 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S R GF + + +S +L + GGH A G TV+ L + A + Sbjct: 392 SVRGPIGFAVDRALSKC--SDLLTRFGGHPAAGGFTVKAEFVHALHERLCAEADGWLMTQ 449 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 + D +L VN L L+S P+G G+P P+F ++ R + HL + Sbjct: 450 AQGRPVQPDALLQLKDVNWDLWRHLQSLAPFGIGHPKPLFWSRRVSVEDRRDLKGGHLAL 509 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 T +SE +AIA+R + + V + +N W+G +R QL + Sbjct: 510 TLRQGESER-RAIAWRWDPS-------AAVPACCDVAYSISINRWQGEQRLQLELKAIRA 561 Query: 592 VE 593 Sbjct: 562 HT 563 >gi|56419129|ref|YP_146447.1| single strand dnaspecific exonuclease [Geobacillus kaustophilus HTA426] gi|56378971|dbj|BAD74879.1| single strand DNAspecific exonuclease [Geobacillus kaustophilus HTA426] Length = 553 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 147/527 (27%), Positives = 243/527 (46%), Gaps = 22/527 (4%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCD 79 L + ++ I ++ L + + F+ P+I DP ++ D Sbjct: 10 LEKHPNKALITYMARQFDIEPVLMHHLFIHGIDNCEKVSRFIFPTIDDFH-DPFLMNDMK 68 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 KA RI++A+ EKI I+GDYDVDG + A++ + L + + +P R +GYG +P Sbjct: 69 KAIIRIIKALTQKEKIFIYGDYDVDGMTATAILYKALKKFKADVHYRLPLR-SEGYGLSP 127 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 MEK LIITVD GS+++ A++ A +G+DVIV DHH+V YA +NP R Sbjct: 128 KAMEKVPE-DTTLIITVDNGSSAHPAMEVAKRRGMDVIVTDHHEVLGPHPDCYAFINPKR 186 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 D+ HL AGV V+ ++ K+P + + ++ L T+ D++PL G Sbjct: 187 HDNTYPFPHLAGAGVALKVVQALFMA----GKIPWDKHVYEFIEFATLGTIADLMPLKGE 242 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 NR GL P LK L E + I + + + + IGP N+ GRIG+ N Sbjct: 243 NRIICKLGLQKMNYTPTPVLKKLFEMLRIK-YVDSSTISFQIGPIFNSSGRIGDPNQAVD 301 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 +L++ + ++ + L LN+ R+ M ++ E +++ Q ++V D +H Sbjct: 302 ILVNPLCAKADLYS--LITLNKKRQQMTKEQFQRIEEQIIQNQWYKQN---VIVVCDDFH 356 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 GI+GL+AA++ KF +P+ IS G S RS+ D + L K GG Sbjct: 357 SGIIGLIAAKIANKFKKPAIVISLTGAG----SARSVNATDFSMINVIKKCSHFLTKYGG 412 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H AAG +++ +F + F + + TP K + + + D L Sbjct: 413 HRAAAGFSIK-PDFDHIHAFREAIQLAALDEPPLTPKLKYISTIPLHQFPMHIFDDLGVL 471 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAF 546 P+G P P+F ++ +V + + + D +AIAF Sbjct: 472 EPFGMSFPKPLFYCSPLVIKQFQVFGKNNEHLKLITNDK---KAIAF 515 >gi|269120922|ref|YP_003309099.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella termitidis ATCC 33386] gi|268614800|gb|ACZ09168.1| single-stranded-DNA-specific exonuclease RecJ [Sebaldella termitidis ATCC 33386] Length = 560 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 142/582 (24%), Positives = 265/582 (45%), Gaps = 33/582 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 RW L + ++ +++ ++ +L+NR ++ + FLNPS+ + DP + Sbjct: 2 RWELLNYNDEYIQSK--SKEFHTDKLITELLLNRGITNKEDVDKFLNPSMEN-INDPFLF 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D ++ RI+ A N EKI I+GDYDVDG + A ++ L + +N + +I +R+ +G Sbjct: 59 EDMERIVERIIIARKNKEKIFIYGDYDVDGISGTAYLIIVLRNLGINIDYFIQNRVHEGS 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 N + A+L+ITVD S + ++ T GID+I+ DHH+ ++ + Sbjct: 119 KINKHFVNYIKKRNAKLVITVDTSFGSTEEIELLTKNGIDLIITDHHRQTNKLKLDVKTI 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP HL +G+ + + +Y L K+ L +D+V + TV DVVP Sbjct: 179 NPKI-SKTYPFKHLSGSGMAYKLADAVYERLGVSKKI-----LHDYMDIVMIGTVADVVP 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGES 314 + NR + +GL R+ GL+ LI + +++ I ++G+ I P +NA GRI S Sbjct: 233 MTDENRFIIKQGLANLRKTKVKGLEYLIVYLKLNAYSINTSDIGFYIAPMLNALGRIDSS 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + I D + + ++ N+ RR +E + + E K+ ++ I ++ Sbjct: 293 KMVVDFYIEKDDFRIFNIIEEMKRANKIRRYLEINIYNEIEEKIAKM---REKPKYIFMK 349 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 +WH G+ G++++RL K+ P IS ++G G S RS+EG +I ++ Sbjct: 350 SKKWHSGVTGVVSSRLSLKYNIPVIIIS-IKNGYGKASCRSVEGLNIFDILKE--ISHKF 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG V ++ + + + + + I ID L+ +N L+ Sbjct: 407 ERFGGHDLAAGFLVTEKVLFQIEKYLKNKLYRLNKSDIEKKFL-IDSYLSIENINKTLVK 465 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + P+G N P F N L + H + + ++ L I + + Sbjct: 466 EINKLSPFGLDNQEPNFTDNNVTLLNYTKFGVDSRHFKGMVV-KGNKKLPVIGYNLGD-- 522 Query: 553 LGEFLMQSRGKRMHVTGHLCV----NYWRGSKRCQLRVLDAS 590 + ++ GK++ + + N + +L++ D Sbjct: 523 --KIDTKNSGKKIEILYTPVLKYGKNDFF----IELKLKDFK 558 >gi|30961856|gb|AAP40011.1| single-stranded DNA-specific exonuclease [Citrobacter freundii] Length = 483 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 160/487 (32%), Positives = 246/487 (50%), Gaps = 16/487 (3%) Query: 117 SHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175 N + +P+R DGYG +P ++++ GAQLI+TVD G +S+ +++A GI Sbjct: 2 RALGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARTLGIP 61 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL- 234 VIV DHH A A++NPN D L GV F +++ + LR Sbjct: 62 VIVTDHHLPGDTLPGAEAIINPNLHDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDER 121 Query: 235 ---NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS 290 +L LLDLVAL TV DVVPL NR +GL R + PG+KAL+E N Sbjct: 122 GIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDP 181 Query: 291 -PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 + A +LG+ +GP +NA GR+ + ++G LL+ D+ E +LA +LD LNQ R+ +E Sbjct: 182 LKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQG 241 Query: 350 MLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK 408 M +A + + + WH G+VG+LA+R+KE+F RP A + DG Sbjct: 242 MQAEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT 301 Query: 409 GIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 GSGRSI+G + + G+++K GGHAMAAGL++E F R F + Sbjct: 302 LKGSGRSIQGLHMRDALERLDTLHPGMILKFGGHAMAAGLSLEEAQFERFQQRFGELVTE 361 Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526 + + DG L+A+ + + + ML AGP+G P P+F + +L R+V Sbjct: 362 WLDPALLQGEVVSDGALSAAEMTMEVAQMLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGE 420 Query: 527 AHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 HL++ E L IAF V T + + + + + L +N +RG++ Q+ Sbjct: 421 RHLKVMVEPVGGGPLLDGIAFNVDTTCWPD----NGVREVQLAYKLDINEFRGNRSLQII 476 Query: 586 VLDASPV 592 + + P+ Sbjct: 477 IDNIWPL 483 >gi|42523690|ref|NP_969070.1| single-strand DNA-specific exonuclease [Bdellovibrio bacteriovorus HD100] gi|39575897|emb|CAE80063.1| single-strand DNA-specific exonuclease [Bdellovibrio bacteriovorus HD100] Length = 575 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 156/581 (26%), Positives = 264/581 (45%), Gaps = 15/581 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLILT 76 W + + + P ++ +VL R + + L P + L DPL+L Sbjct: 5 WTLRESENEPVIPSNVEGQW--PKLITKVLAARGFAEASHVEKLLFPKLADL-KDPLVLK 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGY 135 +A R+ QA N EKI I+ D+D+DG + +AL+ + + Y P R+ +GY Sbjct: 62 GMSQALERLGQAYLNKEKICIYADFDLDGTSGLALLKTGMLALGFPDVLHYQPKRLAEGY 121 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + +E+ +G LIITVD G T++ A+ A G+DVI+ DHH A+ +V Sbjct: 122 GFHAHAVEELKKQGVSLIITVDVGITAHAAIDKANELGVDVILTDHHLPADTIPSAFVVV 181 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD-LLSLLDLVALATVCDVV 254 NPN+ D SG G+LC AGV F +L + R ++P N L +LD + T+ D+V Sbjct: 182 NPNQGDCPSGLGYLCGAGVAFYLLRGLKRHFHDHPQLPKNNWDLKEVLDYFTIGTLTDMV 241 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 PL+ NR V GL+ GL+AL+E ++ P+T++++ P +NA R+ Sbjct: 242 PLVDDNRVLVKHGLVKLAETKRAGLRALLEELDLTGRPLTSQDVAIRFAPKLNALSRMES 301 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 L + + DD + + ++ N R ++ AEA+ + V Sbjct: 302 GILPIDIFLLDDPSQARDMVRQVMKNNSTRVQLQGD----AEAEAQQLLQGWPHQDFVFV 357 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 +H G++GL+A +L + + +P+F + +DG +GS R +G + + + + + + Sbjct: 358 ASRNFHRGVLGLIATKLTQVYNKPAFVGAVGDDGMIVGSARLPQGQEACLVEAMSSAQEL 417 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH+ AAG + + + D S V+ AL+ Sbjct: 418 LSRFGGHSAAAGFEIAETKVSTFVGKLADHFSD-LREKPKPLEIFYDVEAGLSEVSEALM 476 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTP 552 + GP+GAG P+ F N ++ S R + HL++ + +A+ F TP Sbjct: 477 KWYDFVGPFGAGFSIPLIHFTNVQVLSKRELKGGHLRLKIADADGGASAEALLF--TPTP 534 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + + HV G L NY+ G K Q+ + D Sbjct: 535 RQLDTLTNVPGFYHVLGELQWNYFAGQKTVQILIRDLKAAT 575 >gi|322435270|ref|YP_004217482.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp. MP5ACTX9] gi|321162997|gb|ADW68702.1| single-stranded-DNA-specific exonuclease RecJ [Acidobacterium sp. MP5ACTX9] Length = 606 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 168/603 (27%), Positives = 270/603 (44%), Gaps = 33/603 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 RWV A+ + P+ +A +L +R ++ + DPL L Sbjct: 5 KRWVVTP--PVSAATAALRSQLDCPEPIASLLASRGITDPKP---FLDPSLDDLLDPLTL 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS-----VNANMYIPDR 130 A RI QA+ EKI+I+GDYDVDG + L+ + + ++P R Sbjct: 60 LGMTAAVARIEQAVRQGEKILIYGDYDVDGTVATVLLKTAIERTAAPGKPAQVTYHVPHR 119 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE--E 188 I +GYG +++ N G L+I+VD G ++ A A G+D+IV DHH Sbjct: 120 IREGYGMQTNVLGLAANSGITLVISVDTGIRAFAAAAEARALGLDLIVTDHHLPDGAAGI 179 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLDLV 245 A A++NP + +LC A V F + + + Q + S L LV Sbjct: 180 PDALAVINPAQPGCPYLNKNLCGAAVAFKLAQALLQNAAQTPDQQLRLKQTIIPSFLKLV 239 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGP 303 A+AT+ D V L G NRA GL PGL+AL++ + P TA +G+ + P Sbjct: 240 AIATIADSVSLTGENRAIAWLGLRELANPIQPGLRALMQVAKLPLDRPPTATEVGFRLAP 299 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV--LTQ 361 INA GR+ ++ L ++ DS LA KLD LNQ+RR E+A LE E ++ +T Sbjct: 300 RINAAGRMDVASDVVELFLTRDSHIARELAQKLDDLNQDRRATEAAALEAIEMQLLTMTS 359 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + + VIV+ WH G++G+LA+R+ ++ GRP+ ++ + G GSGRSI GF + Sbjct: 360 PEGLYAPEVIVLSHPEWHRGVLGILASRVVDRTGRPALVMTESD-GDAHGSGRSIAGFHL 418 Query: 422 GKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 ++ + + GGHA A G ++ L D + + +++ + P Sbjct: 419 LDALTAIHDIDATLFTRFGGHAHAVGFSLPTTRLPLLRDRIKLHSTSLLIQEMLIPEIVC 478 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS-IRVVNLAHLQMTFESQDS 538 D L + + L ++ P+G P PVF N L + IR++ H+ + S Sbjct: 479 DLELMQADLTPDLCQWIDRCAPFGNAAPEPVFLTRNLILSAPIRIIKERHICIPLVSATG 538 Query: 539 ETLQAIAFRVYGTPLGE----FLMQSRGKRMHVTGHLCVN---YWRGSKRCQLRVLDASP 591 +L A+ + TP G + L N + G +L ++D +P Sbjct: 539 NSLSAMGWSRSSTPDWPTRCAAFDLRPGSAIDAVFRLRENKHPQYGG---VELELIDLAP 595 Query: 592 VEG 594 + Sbjct: 596 AQS 598 >gi|154686903|ref|YP_001422064.1| YrvE [Bacillus amyloliquefaciens FZB42] gi|154352754|gb|ABS74833.1| YrvE [Bacillus amyloliquefaciens FZB42] Length = 461 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 155/470 (32%), Positives = 228/470 (48%), Gaps = 22/470 (4%) Query: 13 ISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 S RW Q + ++T++ I +VA +LV R + A+ FL+ D Sbjct: 3 ASKMRWEIQ--QPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFY-D 59 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P L +A RI A+ E IMI+GDYD DG S ++M+ L S + + YIPDR Sbjct: 60 PYELKGMREAVDRIKLAVSQGEPIMIYGDYDADGVTSTSVMLTALRQLSADVDFYIPDRF 119 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYGPN G LIITVD G + + A G+DVI+ DHH+ E Sbjct: 120 TEGYGPNEQAFRSIKERGFSLIITVDTGIAAVQEAEVAKELGLDVIITDHHEPGPELPDV 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P + L GV F + + L + ++LDL A+ TV Sbjct: 180 FAIIHPKQPGCGYPFKELAGVGVAFKLAHALTGSLPE-----------AMLDLAAIGTVA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGR 310 D+VPL NR G+ R PGLKALI+ E +G+ + P +NA GR Sbjct: 229 DLVPLHDENRLIASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGR 288 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 I +++ LL+++D E E LA +D LN+ R+ M M E+A V Q S Sbjct: 289 IEQADPAVHLLMTEDQFEAEELASDIDRLNKERQKMVKTMTEEAVEMVQQQGG---NPSA 345 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAV 429 IVV W+PG+VG++A++L E+F RP+ + + E G GS RSI GF++ S + Sbjct: 346 IVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNL--FTSLSQ 403 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 IL GGH MAAG+T++ + L D + A + PV ++ Sbjct: 404 CRDILPHFGGHPMAAGMTLKAEDVAELRDRLNQMAEETLTEEDFIPVQEV 453 >gi|34556668|ref|NP_906483.1| putative single-stranded-DNA-specific exonuclease [Wolinella succinogenes DSM 1740] gi|34482382|emb|CAE09383.1| PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE EC 3.1 [Wolinella succinogenes] Length = 534 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 147/556 (26%), Positives = 261/556 (46%), Gaps = 41/556 (7%) Query: 40 PDIVAR-----VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 P ++ + +L R + D F ++ L P P L +A I++A+ + Sbjct: 7 PPLLGKREIESILSQR-FAKD---RF--CRLKDL-PSPEKLHGIPQACDLIIEAMQQKRR 59 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 I++ GDYDVDG S A+M+ F S IP+R DGYG +P+L+E+ LII Sbjct: 60 IVVIGDYDVDGIVSTAIMVDFFHRLSYPITSVIPNRFCDGYGLSPALIERL---ETDLII 116 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +++A + +GI +I+ DHH E A ++NP Q +C A V Sbjct: 117 TVDNGIMAHEAAKICQERGISLIITDHHTPPLELPCAKVIINPKLSCCSFPQKEICGASV 176 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + + + ++ D+ LDL+ALA + DV+PL+ +NR V +GL R Sbjct: 177 AWYLCAAL------KGRLEAKIDMGEFLDLLALAIIADVMPLVEVNRLLVRQGLKEMARS 230 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 L E++ S + E++ ++I P +N+ GR+ +++L L+SD E Sbjct: 231 NRAAFVVLKEKLR-KSHFSGEDVAFLIAPLLNSAGRMEDASLSLEFLLSDSILEAGEKFD 289 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 +L LN R+ ES + E+A ++ + + + G+ WH G++G++A+RL +++ Sbjct: 290 RLCALNCLRKETESRLFEEALGQIDLCGEAL------LAYGEDWHEGVLGIVASRLTDRY 343 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 +P+F ++ +E G GS RS+ D+ +++ + +L++ GGH AAG+ + R NF Sbjct: 344 KKPAFILTQKE-GSLKGSARSVGELDLVRLLQKSHH--LLLRYGGHKGAAGIQLRRENFE 400 Query: 455 RLCDFFQKFAHNIVPA-LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 ++ + + G + +V+ L+D+LE PYG GNP P F Sbjct: 401 SFKQAIEEELSRLKERIEWRCEGEECLGEIALESVDAELLDILERFEPYGEGNPKPRFFC 460 Query: 514 PNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 ++ ++V H + ++ +AIAFR + + + L Sbjct: 461 KEARVCRYKIVGAEKNHTSLVLKNPSGNERKAIAFR-------QVYEFAPLASISCLFSL 513 Query: 572 CVNYWRGSKRCQLRVL 587 + + QL + Sbjct: 514 SRDIFSAESIPQLIIE 529 >gi|148242584|ref|YP_001227741.1| single-stranded DNA-specific exonuclease [Synechococcus sp. RCC307] gi|147850894|emb|CAK28388.1| Single-stranded DNA-specific exonuclease [Synechococcus sp. RCC307] Length = 616 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 159/565 (28%), Positives = 272/565 (48%), Gaps = 28/565 (4%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL---ILTDCDKAARRIVQA 88 + Q A+P + VL R V S + L P P P D + A +R++QA Sbjct: 6 LPQSLALPPALVAVLQRRGVQSHQELQSLLQPD-----PAPEAKAHFPDLEIAVQRLLQA 60 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + + + GDYD DG S AL++ LS IP R +GYG N +++E+ + Sbjct: 61 CREGQALAVCGDYDADGMTSTALLVGVLSRLGAKPQAAIPSRQSEGYGLNAAMVERLAEQ 120 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 G +L++TVD G ++ +AL+ A G++VIV DHH + + P AL++P S Sbjct: 121 GVKLLVTVDNGISAREALERAEGLGLEVIVTDHHTIPPQRPPLLALLHPALTPPSSPYRG 180 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 L G+ +++ + LR L + LDL + T+ D+ PL G+NR ++ +GL Sbjct: 181 LAGVGLAYVLAAAVAERLR------NPQALRTALDLFCIGTIADMAPLTGVNRRWLQEGL 234 Query: 269 MVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R PGL+AL E PI ++ +G+ + P +NA GR+ + L LL + D+ Sbjct: 235 PQLHRSLLPGLRALAELAGLEDRPIDSQGVGFRLAPRLNAVGRLADPQLAVELLTTADAD 294 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 LA + + LN+ RR + + +A A V + D Q+ + +++ + WH G++G++A Sbjct: 295 RALELAERCEQLNRQRRELCDGIEAEANALV--EADGDQRPAFLLLAQNHWHHGVIGIVA 352 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447 ARL E++G P ++ E +G+ S R+ EGF + + +L + GGH A G T Sbjct: 353 ARLVERWGLPVALLAGEGNGRLRSSVRAPEGFAVDAALQAC--ADLLERFGGHPAAGGFT 410 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 V+ L + A++ + V + + +L ++ + L P+GA NP Sbjct: 411 VQATQVAALHERLNGLANDWLAGREHALVVRPEALLPLEQIDRDFLQQLRRLEPFGAANP 470 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 +P+F + K++ R++ HL + +L AIA+R G + + + Sbjct: 471 SPLFWARHCKVKRQRLLRGGHLLLELAVPTG-SLSAIAWRWSG-------PEPSSPTLDL 522 Query: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 L ++W+G R QL + P Sbjct: 523 AFRLKEDHWQGQPRLQLELEALRPA 547 >gi|223038443|ref|ZP_03608737.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter rectus RM3267] gi|222880300|gb|EEF15387.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter rectus RM3267] Length = 523 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 145/550 (26%), Positives = 260/550 (47%), Gaps = 37/550 (6%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + +L R + ++ + + P P L D K A RI +AI +EKI+I GDYD Sbjct: 7 IKELLSRR------FEKDIHKKLSEI-PTPDALKDVFKGAERIKRAIEQNEKIVIVGDYD 59 Query: 103 VDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 VDG + +M F V + IP+R DGYG NP ++E+ + A LI+TVD G + Sbjct: 60 VDGVIASVIMAEFFDDLGVSEYFVRIPNRFSDGYGLNPQIVEEIAD--AGLIVTVDNGIS 117 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 + DA Q +GID+I+ DHH AYA++NP + D +C A V + ++ Sbjct: 118 ANDAAQICKQKGIDLIITDHHMPPDVLPEAYAIINPKQKDCPFPNVEICGAQVAWYLVGA 177 Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281 + + R + +D+ LDL+A+A + D++ L LNR V G+ A Sbjct: 178 LKDVCRIN------YDMGKFLDLLAIAIIADMMELRDLNRILVKLGVNRLNSSRRAAFAA 231 Query: 282 LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 + ++ +++ ++I P IN+ GR+ ++++ L + + + N Sbjct: 232 I-KQFYAKDKFECDDISFLIAPLINSSGRMDDASVSFEFLRAKNIDRACECLDTIVSFNN 290 Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401 +R+ E + E + V + +IV G WH G++G++A+RL ++F +P+ Sbjct: 291 SRKEEERTLFECSLKDVR------EDEQIIVTWGRGWHEGVIGIVASRLAKQFKKPAIVF 344 Query: 402 SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 S ++ + GS RS+ DI ++ A E +L GGH AAG+ ++ N Sbjct: 345 S-IDENRAKGSARSVGKLDILSLI--ASHENLLAGYGGHKGAAGIVIDPANLEAFKTAIN 401 Query: 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI 521 ++ + + G ++A V+ L+++LE PYG NP P+F + +++ Sbjct: 402 GSC-MLMDLHEFSAFDEPLGEIDAGEVDFELLEILEYFEPYGQKNPRPLFEIKSAVVKNK 460 Query: 522 RVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 +++ HL++ + +D + L+A+ F P G+ + + + N +RG Sbjct: 461 KLIGREQNHLKLILQ-KDGKCLEALFFNFTREP-------HAGESIDLVFSVSKNSFRGL 512 Query: 580 KRCQLRVLDA 589 QL V + Sbjct: 513 VTPQLLVKEI 522 >gi|332531460|ref|ZP_08407364.1| single-stranded-DNA-specific exonuclease RecJ [Hylemonella gracilis ATCC 19624] gi|332039129|gb|EGI75551.1| single-stranded-DNA-specific exonuclease RecJ [Hylemonella gracilis ATCC 19624] Length = 610 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 176/616 (28%), Positives = 269/616 (43%), Gaps = 63/616 (10%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARR 84 + R ++ + ++AR+ R V L+ ++ L+P P L +AA Sbjct: 7 DVPPRVAWALEQAGVHPLLARLYAARGVRDKEE---LDDALARLLP-PTTLKGTAEAAIL 62 Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143 + AI +++ I DYD DGA + A+ +R L + + +PDR+VDGYG + Sbjct: 63 LADAIAADQRLCIVADYDCDGATACAVGIRGLRMLGARHVHYIVPDRVVDGYGLTAPISR 122 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + + GA L+ITVD G S + + A G+ V+V DHH +E A +VNPN+ D Sbjct: 123 RVKDSGADLLITVDNGIASMEGVALARELGMRVLVTDHHLPAAELPQADVIVNPNQPGDA 182 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDN--KVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 L GV+F VL+ + LR L +LL LVAL TV DVV L NR Sbjct: 183 FESKSLAGVGVMFYVLLALRAELRARGVLDPATQPKLDALLPLVALGTVADVVKLDANNR 242 Query: 262 AYVVKGLMVARRQGNPG-LKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSR 319 V +GL R P L+AL + + +A + G+ +GP INA GR+ + LG Sbjct: 243 RLVAQGLKRIRAGHMPEGLRALFDVASRKPAQASAFDFGFALGPRINAAGRLADMTLGIE 302 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE---AKVLTQCDDIQQASVI----- 371 LL++DD + LA LD +N+ RR +E M QA ++ + + + Sbjct: 303 LLLTDDVGRADELARMLDGINRERREIEGEMRAQALEIVEQIFARRGATEPSPGRPKTVS 362 Query: 372 -------------------------------VVEGDRWHPGIVGLLAARLKEKFGRPSFA 400 V +H G+VG++AARLK+K RPSF Sbjct: 363 PTGPNHAQDLPATGGSEDAGVPSVGANISALCVFDPDFHEGVVGIVAARLKDKLHRPSFV 422 Query: 401 I----SFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFG 454 + +G+ GSGRSI GF + + G+L++ GGHAMAAG T+ +F Sbjct: 423 FAASRAPGHEGELKGSGRSIPGFHLRDALDLVSKRHPGVLLRFGGHAMAAGCTIAEAHFE 482 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 + A + A T + DG L A ++D L +G G P F Sbjct: 483 VFERALDEVAREWLDAATLTRRIETDGALPAEYRRTDVVDALAR-EVWGQGFAPPTF-SE 540 Query: 515 NHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 ++ S R+V HL + Q + + I F + R+ + L + Sbjct: 541 EVEVLSQRLVAEKHLALKLRHQ-GQPVDGIWFGRAE------PLPPSHSRVKLAFRLEAD 593 Query: 575 YWRGSKRCQLRVLDAS 590 W+G +R + V A Sbjct: 594 EWQGVRRLRFLVEGAE 609 >gi|262037371|ref|ZP_06010836.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia goodfellowii F0264] gi|261748628|gb|EEY36002.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia goodfellowii F0264] Length = 568 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 142/580 (24%), Positives = 257/580 (44%), Gaps = 29/580 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 W + + +++ R+L+NR +S + + FLN S L+ P ++ Sbjct: 2 NWEMKNYDRDYLAFK--SGEFGESELITRLLLNRGISSKEEVEKFLNSSENDLL-SPFLI 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + D+ RI++A N EK++I+GDYDVDG ++ A ++ +N + YIP+R +G Sbjct: 59 ENMDEVTERILKAKKNREKVIIYGDYDVDGISAAAYLVIVFRKLGMNVDYYIPNRAHEGV 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G N +L++ I A L ITVD SY+ + ID+I+ DHH+ E Sbjct: 119 GINSNLIKYLIKRNAGLFITVDTNIGSYEEVMMLKRNNIDIIITDHHRQTEEIKNFNIPT 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 ++ + +L +GV F + +Y + K+ L LD+V + TV DVVP Sbjct: 179 INPKIGNNYPNKNLSGSGVAFKLADAVYEKCGVNKKI-----LYDYLDIVMIGTVADVVP 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 + NR + KGL R+ G+K ++ + I+ IT ++G+ I P NA GRI S Sbjct: 234 MTDENRFIIKKGLYNLRKTKIKGMKYILNYLRINPNNITTSDVGFYIAPIFNALGRIDNS 293 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + I +D +L + ++ N+ RR +E + ++ + + + I ++ Sbjct: 294 KMVVEFFIEEDDFKLFSIIEEMKKANKIRRYLEIEI----YNEIEEKIQRLNKPKYIFMK 349 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 +WH G++G++ +R+ K+ P +S ++G G S RSIEG +I Sbjct: 350 SRKWHSGVIGVVCSRISIKYNIPVILVS-IKNGYGKASCRSIEGLNI--FDMLKETSDKF 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG V + + +K + I V ID VLN +N + + Sbjct: 407 ERFGGHDLAAGFLVSEKYLKEIEIYLKKRLVTANKSNI-EKVLYIDSVLNIEQINKSKVL 465 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPL 553 + P+G N P F K S + + F ++ + I + + Sbjct: 466 DINRLSPFGLDNQEPNFVDKGIKFISFTKFGVNNRHFKGFIKKNDRIISVIGYNLGH--- 522 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLRVLDAS 590 + ++ K+ + ++ + +L++ D Sbjct: 523 -KLKFKNINKKYEIVYTPS---FKSVRTDLFIELKLKDFR 558 >gi|218901966|ref|YP_002449800.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH820] gi|218537227|gb|ACK89625.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH820] Length = 559 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 154/545 (28%), Positives = 236/545 (43%), Gaps = 30/545 (5%) Query: 11 CSISGFRW----VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65 S SG W L + + I I L + + FL P+ Sbjct: 7 SSTSGK-WIPHIQMPHTPPNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNW 65 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 P +L D KA RI +AI N E IMIFGDYD DG S L+ + L + N + Sbjct: 66 EH-CHSPFLLQDMKKAVYRIFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLNANVTV 124 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 +P R +GYG + +M + + LIITVD GS++++A+Q A +G+DVIV DHH + Sbjct: 125 RLPIR-SEGYGLSAKVMNELPS-NISLIITVDNGSSAHEAMQVAKQKGVDVIVTDHHDIL 182 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 YA +NP R DD L AGV V+ ++ ++Q P L++L Sbjct: 183 QGYPDCYAFINPKRNDDTYPFPFLAGAGVALKVVQALFETIKQ----PFLKYCSELIELA 238 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 + T+ D++PL NR GL +P LK L + + I + + + +G+ IGP Sbjct: 239 TIGTIADLMPLKDENRIICSYGLKQMNSNPSPALKTLFKLLKIKT-VDSSTIGFQIGPLF 297 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GRI + N+ +L ++++ + + +L +N R+ M AE + Sbjct: 298 NATGRIADPNITGEMLRNNETDQAKWT--ELLCINNQRKQMTKEQFLIAEETIFQDQLHK 355 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+ +HPGI+GL+++R+ EK+ +PS IS G S RS+ D + Sbjct: 356 DNVIVVW---GDFHPGIIGLISSRISEKYKKPSIVISNTGTG----SARSVNKTDFSIVK 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 L K GGH AAGL++ L F P L Sbjct: 409 VIQDCRDYLKKYGGHRAAAGLSIPMKEQHLLL-FRSAIQEAAKTQTCLIPPTYYLSKLPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL------QMTFESQDSE 539 + L L + P+G NP P+F N K ++++ HL + F Q + Sbjct: 468 DKFSEQLFRDLYTLEPFGMENPKPIFLSQNTKPSFVKMLGEDHLLLGISSRCVFGFQKGD 527 Query: 540 TLQAI 544 + I Sbjct: 528 LYEQI 532 >gi|118595102|ref|ZP_01552449.1| exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease [Methylophilales bacterium HTCC2181] gi|118440880|gb|EAV47507.1| exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease [Methylophilales bacterium HTCC2181] Length = 559 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 163/558 (29%), Positives = 269/558 (48%), Gaps = 25/558 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 + +A +L RN+ + ++ L+P P L + A + Q I +KI+I Sbjct: 20 GVDQHLASILAARNIGSIAEIHY---DLKNLIP-PNRLYSLEATAVFLHQCIKKQKKILI 75 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GDYD DGA + A+ + L N + +P+R GYG ++++ + + +IITVD Sbjct: 76 IGDYDADGATATAVAVLGLRKFLANVDFLVPNRFEYGYGLTIGIVKEALKKTPDVIITVD 135 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + +Q+A + IDVIV DHH + A +VNPN+ + LC GVVF Sbjct: 136 NGIASIEGVQFARDNNIDVIVTDHHLPADQIPNANFIVNPNQKNCSFSSKSLCGVGVVFY 195 Query: 218 VLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV-ARRQ 274 +L+ + + R+ N+ +L L+DLV L TV D+VPL NR V G+ R Sbjct: 196 LLMALRAVFREANEFIEIQEPNLFDLIDLVCLGTVADLVPLDFNNRILVHHGMKKIKRNS 255 Query: 275 GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 N G++A+ + N S S + ++ + I P +NA GR+ + ++G + L+S QE E+ A Sbjct: 256 CNFGIQAIAKLSNKSLSHLKTSDISFSIAPKLNAAGRLDDMSIGIKCLLSQSLQEAEVFA 315 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 ++L LN R+ +E M E A + D ++ I + + WH G++G+LA+R+KEK Sbjct: 316 IELIKLNSQRKEIEVEMKEDALKHI---IFDEEKNYSICLFDESWHQGVIGILASRIKEK 372 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERV 451 + RP+ + + +G GSGRSI GF + + F +++ GGHAMA+GLT++ V Sbjct: 373 YFRPTIIFAKDANGILKGSGRSIPGFHLRDALDFISKKHSDLIITFGGHAMASGLTIDEV 432 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVF 511 NF F N++ V +D + I ++ +G G P F Sbjct: 433 NFELFVKVFNAHCANVMSKDDLNLVVDVDESILTMNATFDDIFKID-MSIWGQGFSPPSF 491 Query: 512 AFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 L S + + H + + + +AI F + ++ + Sbjct: 492 -TDEFTLVSQKTLMNKHTKCQLSL-NGKVYEAIFFNFSE---------NLPDKIKAIYSI 540 Query: 572 CVNYWRGSKRCQLRVLDA 589 N +RGSK+ QL + D Sbjct: 541 EANEFRGSKKIQLILRDL 558 >gi|163783930|ref|ZP_02178901.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp. 128-5-R1-1] gi|159880798|gb|EDP74331.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp. 128-5-R1-1] Length = 564 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 153/588 (26%), Positives = 293/588 (49%), Gaps = 34/588 (5%) Query: 9 VECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN--VSIDYAKDFLNPSIR 66 + ++G RW+ L E + KH ++ +++ NR + + ++ + P I+ Sbjct: 1 MIKGLTGQRWLILEDIEKAPD--YLINKHG--RVLGQLIFNRRTLFNNKFEEENIYPKIK 56 Query: 67 LLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 L+ P T ++ A+ + I + I I+GDYD DG S AL+ FL V Y Sbjct: 57 NLIE-PKYFTKLEEIAQNLANDIKKGKSIAIYGDYDADGITSTALLANFLYDIGVKVKYY 115 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP R +GYG N + ++K I+ + ++I +D G+++YD L +A G+ V V+DHH+ K Sbjct: 116 IPSRFSEGYGLNKAAIKK-ISSLSDILIVLDSGTSAYDELIFAAKNGLKVFVLDHHEPKD 174 Query: 187 EE--IPAYALVNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 + ++NP + HL G+VF +++++ ++L++D L LD Sbjct: 175 KNWKFENVNILNPKLFNKINPYFKHLSTVGIVFYLMIMLRKLLKKD------IPLSPYLD 228 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 +VA+ T+ DVVPL LNR V KG+ R+ G+KA++ ++N+ +++ ++G+ I P Sbjct: 229 IVAIGTIADVVPLTYLNRILVKKGIEEINRKRRKGIKAMLNQLNLEK-VSSFDVGFQIAP 287 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+ ++ +LLIS + ++ + LA +L++LN+ R+ + + ++++ + + Sbjct: 288 RINAAGRLDDAKKAVKLLISRNEKQSKQLAYELEILNKKRQKITENVFKESQTMIKNEKP 347 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 + ++V G WH G++G++A RL EK+ PSF ++ +G + S RS +I K Sbjct: 348 ED----FVMVAGKNWHQGVIGIVAGRLLEKYKIPSFVLA-VNNGYAVASVRSTPEINIHK 402 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 +++ I K GGH+MAAG T++ L + ++ N+ I +ID + Sbjct: 403 ILNK--HAYIFEKFGGHSMAAGFTIKSKKIPELKEILKEEMKNVEKEEI---YLEIDMEV 457 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541 S + + L P+G NP P F N ++Q + +H++ + + Sbjct: 458 PLSYWDERTLKSLSILEPFGEENPFPRFIAKNLRIQDFMTIGIDNSHIKFWLKDTNGNYF 517 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +A+ + S G+++++ ++ + + D Sbjct: 518 EALWWGAKNY----INKLSVGQKINIAYIPKISKFNNKVNINFIISDV 561 >gi|171059081|ref|YP_001791430.1| single-stranded-DNA-specific exonuclease RecJ [Leptothrix cholodnii SP-6] gi|170776526|gb|ACB34665.1| single-stranded-DNA-specific exonuclease RecJ [Leptothrix cholodnii SP-6] Length = 579 Score = 312 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 168/586 (28%), Positives = 267/586 (45%), Gaps = 36/586 (6%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 A A+ ++ + ++AR+ R + L+ + L+P P L D AAR Sbjct: 10 DVPPRAAWAL-EQAGVHPLLARLYAARGIRTP---SELDDGLARLIP-PTELLGADAAAR 64 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNA---NMYIPDRIVDGYGPNPS 140 + A+ E+I+I DYD DGA + A+ +R L+ +PDR V GYG P+ Sbjct: 65 LLADALQAGERIVIVADYDCDGATACAVALRGLAMLGARPGTLQHVVPDRAVHGYGLTPT 124 Query: 141 LME----KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------IP 190 +++ + +E +++TVD G S+ + +A G+ V+V DHH ++ Sbjct: 125 IVDLALARPAHERPSVLVTVDNGIASHAGVAHAQALGMKVLVTDHHLPAADANGAVTLPT 184 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDLVALA 248 A +VNPN+ L GV+F VL+ + LR L +LLDLVAL Sbjct: 185 ADVIVNPNQPGCAFESKALAGVGVMFYVLLALRAELRARGAFDAANQPRLDALLDLVALG 244 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIGPSIN 306 TV DVV L NR V +GL R A + + + G+ +GP +N Sbjct: 245 TVADVVRLDANNRRLVAQGLKRIRSGRMQAGVAALFVAAGRDPMKASGFDFGFALGPRLN 304 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 A GR+ + LG L+SDD LA +LD +N+ RR +ES M EQAE + + Sbjct: 305 AAGRLADMGLGIACLLSDDPGHATELAQQLDAINRQRREVESGMKEQAEVLLERLMPAGE 364 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + + +H G+VG++A RLKE+ RP+F + DG GSGRSI GF + + Sbjct: 365 PPPALSLYDPEFHEGVVGIVAGRLKERLHRPTFVFARGADGHLKGSGRSIPGFHLRDALD 424 Query: 427 FAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + L K GGHAMAAG T++ +F Q+ A + DG L Sbjct: 425 LVAKRHPEVLKKFGGHAMAAGCTIDEADFATFDVALQRVATEWLSPAALQRRLATDGPLE 484 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 + ++ +L+ A +G P+F + S R+V H++++ + +AI Sbjct: 485 RQWFDTDVVQLLD-AAVWGQAFEAPLF-TDEVDVVSQRLVGEKHMKLSVRHA-GQLREAI 541 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 F + R+ + L ++ ++G KR Q+ V A+ Sbjct: 542 WFGHTE---------ALPARVRLAYRLSLDEYQGRKRVQMVVEAAA 578 >gi|42779920|ref|NP_977167.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 10987] gi|42735838|gb|AAS39775.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 10987] Length = 559 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 156/545 (28%), Positives = 236/545 (43%), Gaps = 30/545 (5%) Query: 11 CSISGFRW----VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65 S SG W L + + I I L + + FL P+ Sbjct: 7 SSTSGK-WIPHIQMPHTPPNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNW 65 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 P +L D KA RI +AI N E IMIFGDYD DG S L+ + L + N + Sbjct: 66 EH-CHSPFLLQDMKKAVYRIFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLNANVTV 124 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 +P R +GYG + +M + + LIITVD GS++++A+Q A +G+DVIV DHH + Sbjct: 125 RLPIR-SEGYGLSAKVMNELPS-NISLIITVDNGSSAHEAMQVAKQKGVDVIVTDHHDIL 182 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 YA +NP R DD L AGV V+ ++ ++Q P L++L Sbjct: 183 QGYPDCYAFINPKRNDDTYPFPFLAGAGVALKVVQALFETIKQ----PFLKYCSELIELA 238 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 + T+ D++PL NR GL +P LK L + + I + + + +G+ IGP Sbjct: 239 TIGTIADLMPLKDENRIICSYGLKQMNSNPSPALKTLFKLLKIKT-VDSSTIGFQIGPLF 297 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GRI + N+ +L ++++ + + +L +N R+ M AE + Sbjct: 298 NATGRIADPNITGEMLRNNETNQAKWT--ELLCINNQRKQMTKEQFLIAEETIFQDQLHK 355 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+ +HPGI+GL+++R+ EK+ +PS IS G S RS+ D + Sbjct: 356 DNVIVVW---GDFHPGIIGLISSRISEKYKKPSIVISNTGTG----SARSVNKTDFSIVK 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 L K GGH AAGL++ L F P L Sbjct: 409 VIQDCRDYLKKYGGHRAAAGLSIPMKEQHLLL-FRSAIQKAAKAQTCLIPPTYYLSKLPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL------QMTFESQDSE 539 + L L + P+G NP PVF N K I+++ HL + F Q + Sbjct: 468 DKFSEQLFHDLYTLEPFGMDNPKPVFLSQNTKPSFIKMLGEDHLLFGISSKCVFGFQKGD 527 Query: 540 TLQAI 544 + I Sbjct: 528 LYEQI 532 >gi|257126080|ref|YP_003164194.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia buccalis C-1013-b] gi|257050019|gb|ACV39203.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia buccalis C-1013-b] Length = 559 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 139/580 (23%), Positives = 255/580 (43%), Gaps = 28/580 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W E + + + +++R+L+NR + + + FLN + + +P + Sbjct: 2 KWEIKNYDEKYLASKSF--EFGESKLISRLLLNRGINTKEKVSKFLNSDKKDIH-NPFLF 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + +K +RI QA N EKI+++GDYDVDG + VA ++ L +N + YIP+R+ +G Sbjct: 59 ENMEKVVKRIQQAGENKEKIVVYGDYDVDGISGVAYLVIMLRKLGLNVDYYIPNRVHEGI 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 N L+ A+L ITVD + + + N GID+I+ DHH+ L Sbjct: 119 EINKHLVTFLEKREAKLFITVDTSINNREEILMLRNNGIDIIITDHHRQVEVCEEMDILT 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 + L +GV F + +Y + K+ L LD++ + TV DVVP Sbjct: 179 INPKTSKTYPNKFLSGSGVAFKLADAVYERYGANKKI-----LYDYLDIIMIGTVADVVP 233 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 + NR + KGL ++ GLK +I + I+ IT ++G+ I P NA GRI S Sbjct: 234 MTDENRFIIKKGLNNLKKTKIKGLKYIINYLKINPRNITTSDIGFFIAPIFNALGRIDNS 293 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + I +D +L + ++ N+ RR +E+ + + E K+ +++ I ++ Sbjct: 294 KIVVNFFIQEDDFKLFSIIEEMKRANKIRRYLENEIYSELEEKIQR----LERPKYIFMK 349 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 +WH G++G++ +R+ K+ P IS ++G G S RSIEG +I ++ L Sbjct: 350 SRKWHSGVIGVVCSRISIKYNIPVILIS-IKNGYGKASCRSIEGINIFDILKSV--SDKL 406 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG V G + ++ +D LN +N + Sbjct: 407 ERFGGHDLAAGFLVSEKYLGEIEKHLRQKLARK-NRENVQKTLYVDAWLNIENLNKRKLH 465 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPL 553 + P+G N P F + ++ + + F +++ + I + + Sbjct: 466 EINRLSPFGLDNQEPNFMDSDVNFFNLTKFGINNRHFKGFVRKNNRIISVIGYNLGHKL- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLRVLDAS 590 + K+ + ++ +L++ D Sbjct: 525 --KMNNFYKKKFKIVYTP---IFKSVHSDLFIELKIKDFK 559 >gi|328950387|ref|YP_004367722.1| single-stranded-DNA-specific exonuclease RecJ [Marinithermus hydrothermalis DSM 14884] gi|328450711|gb|AEB11612.1| single-stranded-DNA-specific exonuclease RecJ [Marinithermus hydrothermalis DSM 14884] Length = 715 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 166/570 (29%), Positives = 257/570 (45%), Gaps = 50/570 (8%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW+ A+ Q+ +P +VA VL NR L+P + +PD L Sbjct: 3 RWIMAPWPPREAL-EALMQRLDVPPVVAAVLYNRGFRDPQD---LDPPLA--LPD---LP 53 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + AARR+VQA+ E+I + GDYD DG A+++R L+ + + +IP RI +GYG Sbjct: 54 GLETAARRVVQALERGERIRVHGDYDADGVTGTAILVRGLAALGGDVHAFIPHRIREGYG 113 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 +P + + L ITVDCG T++ L+ QG+ VIV DHH P LV+ Sbjct: 114 VHPDRVAEHAQ-ACDLFITVDCGVTNHAELEALQAQGVSVIVTDHHAPGDTPPPG-ILVH 171 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P G+ AGV F +L ++ +L + DL A+ T+ DV PL Sbjct: 172 PAFAPAFKGKPKPTGAGVAFFLLWQVHALLDK-------PPPTVYADLAAIGTIADVAPL 224 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 +G+NRA V GL R + GL AL +A + + I P INA GR+GE+ Sbjct: 225 LGINRALVRAGLEQLRETRHAGLAALARE--HCKEYSATEIAFRIAPRINAAGRLGEAET 282 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 L + D + LA +L+ LN+ R+ +E AMLE+ + A V+ Sbjct: 283 ALEALTTPDPTRAQALAERLNELNRERQRVEEAMLERLLPNL------DPAAPAYVIHDP 336 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 HPG++G++A+R+ E+F +P F I+ G GS RS G I + + L + Sbjct: 337 EGHPGVMGIVASRILERFYKPVFIIAQ-----GKGSVRSTPG--ISAVGALRAAAAHLER 389 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH AAG + + ++ P P +DG L + + L Sbjct: 390 FGGHTQAAGFAIAEEKIPAFRNAILEYVAAHPPP---VPEVLLDGALEGEDL-EEVYRAL 445 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555 P+G GNP P F F Q +R++ H+ ++ + +R G L + Sbjct: 446 LFLEPFGEGNPEPTFYFRGVP-QEVRLMGEGRHVSFRLGG-----VRVVKWRDDGEALLD 499 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 + + V L +N W G+++ +L Sbjct: 500 V------EEVEVAASLTLNEWNGTRKLELI 523 >gi|295402728|ref|ZP_06812669.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus thermoglucosidasius C56-YS93] gi|294975227|gb|EFG50864.1| single-stranded-DNA-specific exonuclease RecJ [Geobacillus thermoglucosidasius C56-YS93] Length = 553 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 147/529 (27%), Positives = 241/529 (45%), Gaps = 26/529 (4%) Query: 21 LLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCD 79 L + ++ I ++ L + + FL P+I DP ++ D Sbjct: 10 LEKHPNKALITYMARQFDIEPVLMHHLFIYGIDNCEKVSRFLFPTIDDFH-DPFLMNDMK 68 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 KA RI++A+ EKI+I+GDYDVDG + A++ + L + + +P R +GYG +P Sbjct: 69 KAIIRIIKALIQKEKILIYGDYDVDGMTATAILYKALKKFKADVHYRLPLR-SEGYGLSP 127 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 MEK LIITVD GS+++ A++ A +G+DVIV DHH+V YA +NP R Sbjct: 128 KAMEKVPE-DVSLIITVDNGSSAHPAMEVAKRRGMDVIVTDHHEVLGPHPDCYAFINPRR 186 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 D+ HL AGV V+ ++ K+P + + ++ L T+ D++PL G Sbjct: 187 HDNTYPFPHLAGAGVALKVVQALFMA----GKIPWDKHVYEFIEFATLGTIADLMPLKGE 242 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 NR GL P LK L E + I + + + + IGP N+ GRI + N Sbjct: 243 NRIICKLGLQKMNYTPTPVLKKLFEMLRIK-YVDSSTISFQIGPIFNSSGRIDDPNQAVD 301 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 +LI+ + ++ L LN+ R+ M ++ E +++ Q ++V D +H Sbjct: 302 ILINPSCTKADLY--PLITLNKKRQQMTKDQFQRIEEQIIQNQWYKQN---VIVVYDDFH 356 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 GI+GL+AA++ KF +P+ IS G S RS+ D + L K GG Sbjct: 357 SGIIGLIAAKIANKFKKPAIVISLTGAG----SARSVNSTDFSIINVIKKCSYFLTKYGG 412 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H AAG +++ + + F + + P K + + + D L Sbjct: 413 HRAAAGFSIK-PDLDHIHAFREAIQLAALDEPPLNPKLKYISTIPLHQFPMHIFDDLSVL 471 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAF 546 P+G P P+F ++ + HL++T + +AIAF Sbjct: 472 EPFGMSFPKPLFYCSLLAIKQFQTFGKNNEHLKLTTNDK-----EAIAF 515 >gi|294785071|ref|ZP_06750359.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_27] gi|294486785|gb|EFG34147.1| single-stranded DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_27] Length = 789 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 154/520 (29%), Positives = 261/520 (50%), Gaps = 22/520 (4%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 + A +RI +AI N++KI I+GDYDVDG SV+L+ LS N + YIP R +GYG Sbjct: 1 MEVATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLR-DEGYGL 59 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 N ++ NE A LII+VDCG S + + +A +D I+ DHH++ + A A++NP Sbjct: 60 NKEAIQILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVINP 119 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 R +++ +L G F+++ +Y + + N DL LD+VA+ TV D+VPL+ Sbjct: 120 KREENIYSFKYLAGVGTAFMLVYALYTQMNKLN------DLEKYLDIVAIGTVADIVPLV 173 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSP----ITAENLGYMIGPSINAGGRIGE 313 NR +V GL + G+K L+ ++ + A ++GY+I P NA GR+ + Sbjct: 174 SDNRKFVKGGLKLLNNTKWIGIKQLLRKIFPDNWDTREYFAYDVGYIIAPIFNAAGRLED 233 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L I +D + + KL N R+ ++ +LE + A++ + + ++I+V Sbjct: 234 AKQAVSLFIEEDGFKCLSIIDKLLENNVERKDIQKKILEMSIAEI--EKKQLYNKNLILV 291 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEG 432 +H G++G++A+++ +K+ +P+ + +E+ G S RSI+G +I + Sbjct: 292 ANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGVATASCRSIDGVNI--VECLNSVSD 349 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 ILVK GGH+ AAG T++ N KF + KI+ +L VN Sbjct: 350 ILVKYGGHSGAAGFTIKIENIEEFYQRVDKFIEENFDKDLFIKKLKIEKILAPYKVNYEF 409 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYG 550 + LE PYGA N P+FAF N + +++R HL + + I F Sbjct: 410 LKELEILEPYGAKNHTPIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGGD 469 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + S K + + L + ++ C+L++ D Sbjct: 470 Y----YDIISSSKEIDIAFKLKLETFKDRYMCKLQLEDVK 505 >gi|257452231|ref|ZP_05617530.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 3_1_5R] gi|257465974|ref|ZP_05630285.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium gonidiaformans ATCC 25563] gi|315917130|ref|ZP_07913370.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium gonidiaformans ATCC 25563] gi|317058774|ref|ZP_07923259.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 3_1_5R] gi|313684450|gb|EFS21285.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 3_1_5R] gi|313691005|gb|EFS27840.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium gonidiaformans ATCC 25563] Length = 558 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 137/535 (25%), Positives = 247/535 (46%), Gaps = 19/535 (3%) Query: 42 IVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 +++ +L NR + +F+NPS+ DP + + + + +A +I I+GD Sbjct: 9 LLSTLLKNRGIQDFSKLHEFINPSVSSFR-DPFLFENMETIVSMLEKAKKEGSRICIYGD 67 Query: 101 YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160 YDVDG A +++ ++ YIP R +GYG ++ + +G +L+ITVD G Sbjct: 68 YDVDGITGTAFLVKVFRQIGMDTLYYIPSRDEEGYGLTKKNIDFLLEKGVKLVITVDTGY 127 Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220 S + + YA ++ ++VI+ DHH+ EE L +L L AGV + Sbjct: 128 NSLEDIAYAKSKSMEVIISDHHKTVREEGDEDILFLNPKLSQSYEFKFLSGAGVALKIAQ 187 Query: 221 LIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLK 280 +Y+ L D +L LD++ + T+ DVVP++ NR + GL + ++ GL Sbjct: 188 ALYQRLHLD-----LNELYQYLDIIMIGTIADVVPMVDENRIIIKNGLRILQKTKVKGLS 242 Query: 281 ALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339 L++ + I ++ Y I P IN+ GR+G S + + I +D E+ + ++ L Sbjct: 243 YLLKYLKFGDKHINTTDVSYYISPLINSLGRVGTSRIAADFFIKEDDFEIYNIIEEMKKL 302 Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 N+ RR +E + + A + + + + I + RWHPG++G++++RL KF P Sbjct: 303 NKKRRELEKNIYDDAIHSI--EKNGKKGLKCIFLANRRWHPGVIGVVSSRLSLKFQVPVV 360 Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 I+ E G S RS+ + ++ E LV+ GGH +AAG T+E ++ + Sbjct: 361 LIALEGK-LGKASCRSVRNISVYNILEEVKE--DLVRYGGHDLAAGFTIEEEKVEKVRQY 417 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 F ++ A+ + ID L A+ L+ +E P+G+ NP+P+F N + Sbjct: 418 FMEYLSRDTQAVERKKKYTIDMELPLEAIGENLLKDIEKISPFGSENPHPLFLEKNLNFR 477 Query: 520 SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 IR H T + A+ F + + + + + + Sbjct: 478 EIRKFGVDQRHFNGTLV-KAGREYPAVGFDLGHRIQLDTYLA---QTFDIVYYPE 528 >gi|255021678|ref|ZP_05293719.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus caldus ATCC 51756] gi|254968893|gb|EET26414.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus caldus ATCC 51756] Length = 539 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 154/525 (29%), Positives = 256/525 (48%), Gaps = 20/525 (3%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +A I A+ + +I GDYDVDGA + A++ LS + +P+R +GYG Sbjct: 1 MKEAVAWIAYAVRHQWPTVIVGDYDVDGACASAILRGSLSGL-LPVTSIVPNRFTEGYGL 59 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P+++++ +L+ITVD G +++ + A +G+ V+V DHH PA +VNP Sbjct: 60 TPAIVDRIAP-ETKLVITVDNGVSAHAGVAAAKQRGMTVLVTDHHLPGPLRPPADVIVNP 118 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N+ C V + +++ +++ + S +DLVALATV D+V L Sbjct: 119 NQPGCPFPWKSTCGTAVAWYLVLALHQT---HPHWIGREQVESQIDLVALATVADLVKLE 175 Query: 258 GLNRAYVVKGLMVARRQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 NR V GL R NPGL + I S I ++ + IGP +NA GR+ + Sbjct: 176 RNNRVLVANGLRRIREGKINPGLSGIATMAQIELSTIREQDFAFKIGPRLNAAGRLADMQ 235 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 G LL+S D++++E + L+ +N R+ +++ + ++A V V+ V Sbjct: 236 TGIHLLLSRDAEQVERWSRFLETVNAQRKEVQAQIEQEAVEIV--NGMSDSGDPVLCVGS 293 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK-GIGSGRSIEGFDIGKMVSFAV--EEG 432 D WH G+VG++A +LKE+F RP+F ++ +G GSGRS++G+ + ++ G Sbjct: 294 DHWHSGVVGIVAGKLKERFERPAFVLTATGEGDLAQGSGRSLDGWHLRDALARLDTEHPG 353 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 IL + GGHAMAAGL++ + F VP DG L+A+ + + Sbjct: 354 ILQRYGGHAMAAGLSIPKSRFDAFRAGINGVLLEQVPTGALHRQVHCDGPLSAAECTLEM 413 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET-----LQAIAFR 547 +E+AGP+G G P P+F ++S R + H ++ +DS + ++A+ F Sbjct: 414 ARAIEAAGPWGQGFPEPLFENTFV-VESARTMKGGHWKLHLRLEDSSSVPTNLVEAVHF- 471 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G R+ L VN W+G + QL++ A P Sbjct: 472 -LDGKEVAPEPPPSGLRIRAQYRLQVNRWQGREALQLQIHSAYPA 515 >gi|257463895|ref|ZP_05628281.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D12] gi|317061424|ref|ZP_07925909.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D12] gi|313687100|gb|EFS23935.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D12] Length = 558 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 140/542 (25%), Positives = 246/542 (45%), Gaps = 19/542 (3%) Query: 35 QKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSE 93 + + ++ +L NR + +F+NPS+ +P + + + + +A N Sbjct: 2 KGYNSEKLLTTLLKNRGIQDFSKLHEFINPSVSSFR-NPFLFENMETVVSMLERAKQNRT 60 Query: 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 +I I+GDYDVDG A +++ ++ YIP R +GYG ++ + +L+ Sbjct: 61 RICIYGDYDVDGITGTAFLVKVFRQIEMDVVYYIPSREEEGYGLTKKNIDFLYEKRVRLV 120 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 ITVD G S + + YA +G++VI+ DHH+ E L +L L AG Sbjct: 121 ITVDTGYNSLEDIAYARAKGMEVIISDHHKTVREAGDEDILFLNPKLSQSYEFKFLSGAG 180 Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 V + Y+ L D L LD+V + T+ DVVP++ NR + GL V ++ Sbjct: 181 VALKIAQAFYQKLSLD-----LDGLYQYLDIVMIGTIADVVPMVDENRIIIKNGLKVLQK 235 Query: 274 QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 GL L++ + I ++ Y I P IN+ GR+G S + + I +D E+ + Sbjct: 236 TKVKGLAYLLKYLKFGDKNINTTDVSYYISPLINSLGRVGTSRMAADFFIKEDDFEIYNI 295 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 ++ LN+ RR +E + + A + + ++ S I + RWHPG++G++++RL Sbjct: 296 IEEMKKLNKRRRELEKNIYDDAIRAI--EKAGKKRLSCIFLSSRRWHPGVIGVVSSRLSL 353 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452 KF P I+ E G S RSI+ I ++ EE LV+ GGH +AAG T+E Sbjct: 354 KFQVPVVLIALEGK-LGKASCRSIKNVSIYNVLEEVKEE--LVRYGGHDLAAGFTIEEEK 410 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 ++ +F + + + ID L V +L+ +E P+G+ NP+P+F Sbjct: 411 IEKVKRYFMESFSKKTRNVEEKKKYNIDMELPLEVVGESLLQDIEKISPFGSENPHPLFL 470 Query: 513 FPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 N + IR H ++ + A+ F + + + + + + Sbjct: 471 EKNLSFREIRKFGVDQRHFNGILV-KEGKEYPAVGFDLGHRIHLDTYLA---QSFDIVYY 526 Query: 571 LC 572 Sbjct: 527 PE 528 >gi|260771881|ref|ZP_05880799.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio metschnikovii CIP 69.14] gi|260613173|gb|EEX38374.1| single-stranded-DNA-specific exonuclease RecJ [Vibrio metschnikovii CIP 69.14] Length = 486 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 237/481 (49%), Gaps = 20/481 (4%) Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 N + +P+R DGYG +P ++++ ++ GA++I+TVD G +S + ++YA G+ V+V DH Sbjct: 6 NVDYLVPNRFEDGYGLSPEVVDQALHMGAEMIMTVDNGVSSIEGVRYAKQHGLQVLVTDH 65 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FD 237 H A+VNPN L GV F +++ + +RQ + Sbjct: 66 HLPGQVLPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQSGWFIKHGIPEPK 125 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNIS-SPITAE 295 L+ L+DLVAL TV DVVPL NR V +GL R PG++ALIE + A Sbjct: 126 LMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGKARPGIQALIEIAKRDARKLVAA 185 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 + G+ +GP INA GR+ + + G LL++D+ +A +LD LNQ R+ +E M ++A Sbjct: 186 DFGFALGPRINAAGRLDDMSFGVELLLTDNIHAARRMASELDALNQTRKEIEEGMKQEAL 245 Query: 356 AKVLTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 A +V+ WH G++G+LA+R+K+K+ RP A + DG GS Sbjct: 246 AFCERLQFADNSALPQGLVLFQRDWHQGVIGILASRVKDKYHRPVIAFADGGDGLIKGSC 305 Query: 414 RSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 RSI + + GI++K GGHAMAAGLT+ N R F+ + Sbjct: 306 RSIPSLHMRDTLDKIDTQNPGIIIKFGGHAMAAGLTIAEANLPRFRQLFEHEVALQLDEA 365 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 + DG L ++ ++L SAGP+G P+P+F K+ ++V HL++ Sbjct: 366 SLKGIVLSDGELTPEEFSMHTAELLRSAGPWGQAFPDPLFDGE-FKVLHQKLVGEKHLKL 424 Query: 532 TFES-----QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 E + + IAF V + + K + + + +N +RG++ QL + Sbjct: 425 MLEPLFKGHPTNIMIDGIAFNVDLRRWPD----ASVKTVRLAYKIDINEFRGNQSLQLLI 480 Query: 587 L 587 Sbjct: 481 D 481 >gi|162452756|ref|YP_001615123.1| single-stranded-DNA-specific exonuclease RecJ [Sorangium cellulosum 'So ce 56'] gi|161163338|emb|CAN94643.1| single-stranded-DNA-specific exonuclease RecJ [Sorangium cellulosum 'So ce 56'] Length = 585 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 172/572 (30%), Positives = 265/572 (46%), Gaps = 29/572 (5%) Query: 25 EGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILTDCDKAAR 83 E AL + ++ + VA +L + D A + FL+P + L P + D + +A Sbjct: 34 EASADALVMARELGLSITVADILHRAGWAPDEATRRFLDPRLSHL-TSPDAMADREASAE 92 Query: 84 RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 RI +A+ E+I +FGDYD DG + A+M L S + R YG + +E Sbjct: 93 RIARAVRAGERIAVFGDYDCDGITATAIMTGGLRALSGQVVPLLATRAEGSYGLSAPALE 152 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + + G L+IT DCGS+ ++ L A GID +VIDHH V +E +PA A +NP+R D Sbjct: 153 RVMRTGPTLLITCDCGSSDHERLAAARAAGIDCVVIDHHLVPAEPLPAIAFLNPHRADCG 212 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 L + G+ +L + + L + DL LDLVA+ TV DV PL G NRA Sbjct: 213 FPYKGLASCGLALSLLAAVRKRLG------SSLDLRPYLDLVAIGTVADVAPLTGDNRAL 266 Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSINAGGRIGESNLGSRLL 321 V GL V + PGL+AL N+ +AE++ + I P +NA GR+G+ ++ LL Sbjct: 267 VRAGLGVLQTGPRPGLRALAALANLDLGRGASAEDVAFRIAPRLNAPGRLGDPDIALELL 326 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 ++ D LA ++ RR ++ ML A A++ D + IV+ +HPG Sbjct: 327 LAHDGVTASALAATVEQAQMKRRAIQDEMLTSALAEIERAGFD--RDPAIVIARQGFHPG 384 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 +VG++A R+ ++G+P+ I+ E KG GS R G + ++ E LV GGH Sbjct: 385 VVGIVAGRITGRYGKPTIVIALEGA-KGRGSVRGPAGARLHDALTRCRAE--LVGFGGHQ 441 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNI---VPALITTPVFKIDGVLNASAVNIALIDMLES 498 AAG+ V L + A ++D + +AV LE Sbjct: 442 AAAGVEVRADRVEALRAAWCDAFREQDLPAAAASAAAHVRLDDRDDPAAV----ARDLER 497 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P G GN ++S R + HL++ + F LGE Sbjct: 498 LEPCGEGNRPSYVLVAGAAVRSARNL-KGHLKLELTFA-RREISCFGF-----ELGELAP 550 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + GKR+ V G L + WRG ++R+ + Sbjct: 551 RFTGKRVDVVGRLRRDAWRGGDAVEIRIEHVA 582 >gi|330984034|gb|EGH82137.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. lachrymans str. M301315] Length = 695 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 153/614 (24%), Positives = 260/614 (42%), Gaps = 75/614 (12%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 I+ R+L NR + + + P + L+P P + DKA + + I +I+I GD Sbjct: 23 PILNRILQNRGIRH--IDEMIYP-LDALIP-PSSMLGMDKAVLLLEKHIRAGSRIVIVGD 78 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S ++ + L+ + IPDR++ GYG + +++ LI+TVD G Sbjct: 79 FDCDGATSTSIAVEGLTMMGARDVQFIIPDRMIHGYGLSAPVVKLAAEYEPDLIVTVDNG 138 Query: 160 STSYDALQYATNQG---------------IDVIVIDHHQVKSEEIPAY-ALVNPNRLDDL 203 S++ G D++V DHH + +P +VNPN+ Sbjct: 139 IASFEGADAVNALGNPTTLEDGTVIPGRPCDLLVTDHHLAAEKGLPNATVIVNPNQPACD 198 Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGL 259 L GV+F ++ + LR ++ LLDLV+L TV DVV L Sbjct: 199 FPSKALAGCGVMFYTIMALRSHLRDSGYFHEKGMQVPNIAKLLDLVSLGTVADVVSLDRN 258 Query: 260 NRAYVVKGLMVARRQ-GNPGLKALIER-VNISSPITAENLGYMIGPSINAGGRIGESNLG 317 NR + GL R+ PG+KAL++ + A ++G+ +GP INA GR+ + ++G Sbjct: 259 NRILIHAGLKRMRQGLVRPGIKALLDIAEKELGKVVASDMGFAVGPRINAAGRLDDMSIG 318 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 R L+ D + + LA++L LNQ RR +E+ + A V + + + +V+ Sbjct: 319 IRCLLEHDETKAQELALRLTELNQQRRDIEAHHVFDAG--VYIEQHKLMERKGVVIHDPS 376 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFE------------------------------EDG 407 WH G+VG++AAR+KE+ RP ++ + Sbjct: 377 WHAGVVGIVAARIKERLNRPVICMTDTTAASEEREKLNVMISEGAAPDLIEAQRWVLDQC 436 Query: 408 KGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 GS RS+ G + ++ + L K GGHAMAAG++V+ F + Sbjct: 437 DVKGSARSVPGVHMKHVLDHINKTHPEVLGKFGGHAMAAGMSVKYGQLPLFMKLFDEEVA 496 Query: 466 NIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGPYGAGNPNPVF-----AFPNHKLQ 519 + ++D + + + L + GP+G P P F + + + Sbjct: 497 KNLTDEQMLGTIQVDIMNTQPQHMTMDLCRAISEMGPWGQHFPEPEFHARFRLIRDERRR 556 Query: 520 SIRVVNLAHLQMTFESQD--SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW- 576 S +V+ HL+M E D + + I F + L +N + Sbjct: 557 SPKVLKEKHLRMIVEFADYPGQQFETITFNCIHDG-----EMPVEDTFDASFGLSINEYP 611 Query: 577 RGSKRCQLRVLDAS 590 +G+ R QL + + Sbjct: 612 KGTFRLQLMLKELQ 625 >gi|229195094|ref|ZP_04321869.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus m1293] gi|228588323|gb|EEK46366.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus m1293] Length = 559 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 153/545 (28%), Positives = 234/545 (42%), Gaps = 30/545 (5%) Query: 11 CSISGFRW----VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSI 65 S SG W L + + I I L + + FL P+ Sbjct: 7 SSTSGK-WIPHIQMPHTPPNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNW 65 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 P +L D KA RI +AI N E IMIFGDYD DG S L+ + L + N + Sbjct: 66 EH-CHSPFLLQDMKKAVYRIFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLNANVTV 124 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 +P R +GYG + +M + + LIITVD GS++++A+Q A +G++VIV DHH + Sbjct: 125 RLPIR-SEGYGLSAKVMNELPS-NISLIITVDNGSSAHEAMQVAKQKGVEVIVTDHHDIL 182 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 YA +NP R DD L AGV V+ ++ ++Q P L++L Sbjct: 183 QGYPDCYAFINPKRNDDTYPFPFLAGAGVALKVVQALFETIKQ----PFLKYCSELIELA 238 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 + T+ D++PL NR GL +P LK L + + I + + + +G+ I P Sbjct: 239 TIGTIADLMPLKDENRIICSYGLKQMNSNPSPALKTLFKLLKIKT-VDSNTIGFQIAPLF 297 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GRI + ++ +L S+++ + + +L +N R+ M AE + Sbjct: 298 NATGRIADPSITGEMLRSNETDQSKWT--ELLCINNQRKQMTKEQFLIAEETIFQDQLHK 355 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 V+ +HPGI+GL+++R+ EK+ +PS IS G S RS+ D + Sbjct: 356 DNVIVVW---GDFHPGIIGLISSRISEKYKKPSIVISNTGTG----SARSVNKTDFSIVK 408 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 L K GGH A GL++ L V P L Sbjct: 409 VIQDCGDYLKKYGGHRAAGGLSIPMKEQHLLLFRSAIQKAAKVQ-TCLIPPTYYLSKLPI 467 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL------QMTFESQDSE 539 + L L + P+G NP PVF N K I+++ HL + F Q + Sbjct: 468 DKFSEQLFHDLYTLEPFGMDNPKPVFLSQNTKPSFIKMLGEDHLLFGISSKCVFGFQKGD 527 Query: 540 TLQAI 544 + I Sbjct: 528 LYEQI 532 >gi|313672026|ref|YP_004050137.1| single-stranded-DNA-specific exonuclease recj [Calditerrivibrio nitroreducens DSM 19672] gi|312938782|gb|ADR17974.1| single-stranded-DNA-specific exonuclease RecJ [Calditerrivibrio nitroreducens DSM 19672] Length = 540 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 156/560 (27%), Positives = 277/560 (49%), Gaps = 36/560 (6%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 +I+ ++L++R + + + NP + L +++ ++A R I + + S I+++ D Sbjct: 5 EIIEKILISRGIR--DFEQYFNPQPKYLEKSTNLVS-IEQA-RLIAEKLKKSRLILLYSD 60 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPN-PSLMEKFINEGAQLIITVDC 158 YDVDG S A+ RFL+ + N + IP+R DGYG N + E+F + ++IT DC Sbjct: 61 YDVDGVTSSAVFSRFLNEAGIKNYKVVIPNRFKDGYGLNLEKIKEEFESNPFDMLITFDC 120 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD-DLSGQGHLCAAGVVFL 217 G S + + Y G+ V++ DHH + + A ++NP + G HLC GVVF Sbjct: 121 GIGSVEEVDYLKRLGVFVVITDHHLPQKKIPSADVVINPKLSSTEEKGDYHLCGCGVVFK 180 Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277 ++ ++ + R D+ +L L+ VA+ATV D+VPLIG NR V GL V + Sbjct: 181 LIHVLKVLWRLDSI-----ELKRYLEHVAIATVADIVPLIGDNRILVKNGLDVINENPSE 235 Query: 278 GLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 G+KALI + + + + ++G+MIGP INA GR+ ++ LL+ + A L+ Sbjct: 236 GVKALINVSGLKAAVNSYHIGFMIGPRINASGRLDIADTSYYLLMQNSEDAAIKYARILE 295 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 LN R+ + E+A + + D I + W+ G++G++A+RL E+F P Sbjct: 296 ELNHARKKECDEIFEEALSLLPQSPRDG-----ICLYKSSWNKGVIGIVASRLVERFNVP 350 Query: 398 SFAISF-----EEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVER 450 + ++ G GSGRS + ++ +++ G+++K GGH A GL++ + Sbjct: 351 TIIFGTSVGREDDGGIISGSGRSTDDLNLHELLVEIDREYPGLMIKYGGHLKACGLSIYQ 410 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 +F + F + + + D LN + VN LID ++ P+G GN P Sbjct: 411 EDFEAFVEAFTGILQEL--NIDSRKKIFYDMELNFTDVNFDLIDCIKKMEPFGYGNEMPK 468 Query: 511 FAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F F N ++ R + H + + Q+ TL+ I F + + ++++ G Sbjct: 469 FLFKNVEVLDFRAMGDGNHYIINLK-QNGRTLRGIWFNGDEQKITD--------KLNIIG 519 Query: 570 HLCVNYWRGSKRCQLRVLDA 589 +N + ++ Q+R+ D Sbjct: 520 VPIINEYNNNRYLQIRIRDI 539 >gi|306820102|ref|ZP_07453750.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551880|gb|EFM39823.1| single-stranded-DNA-specific exonuclease RecJ [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 779 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 146/543 (26%), Positives = 270/543 (49%), Gaps = 23/543 (4%) Query: 50 RNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASV 109 RN+ ++F +PS+ D + + D K+ +I+ + ++KI I+GDYDVDG ++ Sbjct: 25 RNIYNMTREEFFSPSVDDEH-DAMSMHDMPKSVDKILSIMSENKKICIYGDYDVDGTSAT 83 Query: 110 ALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168 A++++ N YIP R +GYG N + +E LIITVDCG T+ D +Q+ Sbjct: 84 AILLKTFDILGYKNVTYYIPHRKKEGYGLNKTAIETIKQGDISLIITVDCGITAVDEVQF 143 Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228 A + G++VI+ DHHQV PAYA+VNP+R + +LC AG+ + + + L + Sbjct: 144 ANDLGMEVIITDHHQVPDVLPPAYAIVNPHRKNCKYPYKNLCGAGIAYKLSRCL---LNK 200 Query: 229 DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVN 287 N +L++ +AT+ D++ + G NR V + + + N G++AL+ Sbjct: 201 KNMAQT----AEILEIAGIATIADIMEINGENRIIVKNAIQSIKDRCENLGIRALLSESR 256 Query: 288 ISSPITAEN-LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 ++ E+ +G+ I P IN+ GRI + L RL ++ + E + A KL+ LN R+ M Sbjct: 257 LNQKQVDEDSIGFAIAPRINSAGRIDSAYLAVRLYMAKNEIEAKTYASKLNQLNYQRQEM 316 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 ++ E + Q + + +VIV + W G++G++A+RL + F +P+ I+ ED Sbjct: 317 VKSIYESSL----KQSESQKDDNVIVSYDEDWDVGVIGIVASRLVDDFSKPAIVIAI-ED 371 Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 G G S RSI F+I + + +L K GGH MAAG ++++ N +L ++A N Sbjct: 372 GVGHASCRSIGNFNI--FNALSSMSDLLEKFGGHDMAAGFSIKKSNIKKLVKSMNRYAKN 429 Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL 526 + ++D ++ + + + ++ P+G N P F N +L++ + + Sbjct: 430 YLKTEDFILPTEVDYLIEPQMIELENYEKMQLFEPFGISNIRPTFMVSNVRLENPQFIGK 489 Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 ++ + + F Y ++ K++ + + N + + Q+ + Sbjct: 490 DKTHFKARTKSTRK-DMLKFNAYD----KYKDLDFSKKVDIIFRMNKNVYNDNVSIQMMI 544 Query: 587 LDA 589 + Sbjct: 545 QEI 547 >gi|289449971|ref|YP_003475600.1| single-stranded-DNA-specific exonuclease RecJ [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184518|gb|ADC90943.1| single-stranded-DNA-specific exonuclease RecJ [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 718 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 149/589 (25%), Positives = 252/589 (42%), Gaps = 33/589 (5%) Query: 17 RWVSLLGQEGINRALA-ITQKHAIPDIVARVLVNRNVSIDYAKDFLNP-SIRLLMPDPLI 74 +W A + + +I+ +R ++ A+ P + P + Sbjct: 7 KWTEAPQLPLPTEATKTVAAPLGLSEIIK---ASR-MAETAAQAETTPVDLGEEWHSPFL 62 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D +KA + I +MI GDYD DG + A++ R+LS + YIPDR+ +G Sbjct: 63 FNDMEKAVHTVADVIARHGIVMIHGDYDADGLTATAVLYRYLSQFGLEIYTYIPDRLEEG 122 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG ++ + L+ITVDCG S+D + + GI +V DHH + A A Sbjct: 123 YGLAAGGVKSALEHKVDLVITVDCGIVSHDEIAELSAAGILTVVTDHHNCRPTLPAADAC 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP + +L AGV ++ + Q L D + TV DV+ Sbjct: 183 LNPKWPGESYPFPYLAGAGVALKLVQGMSEFFHQ-----PEDVWRDLTDFAMIGTVADVM 237 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL+G N A V +GL + + L+ ITA +G+ + P INA GR+G Sbjct: 238 PLVGENVAIVKEGLSRLNNRARAAWQILLNL-PTDETITATTIGFRLAPLINAAGRMGCV 296 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + +++++D++ +A KL LN+ RR + A+ + E ++ + A ++ V Sbjct: 297 SPALQIMLTDEADIAGEMAQKLQSLNEKRRELTQAVWTEVERQICENPLFLA-APILFVA 355 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISF----EEDGKGIGSGRSIEGFDIGKMVSFAVE 430 G+ WH GI+G+LAA+ +F RP+F ++ + GSGR+ D+ + + Sbjct: 356 GENWHTGILGILAAKAAAEFNRPTFVLNREVDADGKVLYRGSGRTYGTIDL--VATLNTL 413 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--------VPALITTPVFKIDGV 482 +L GGH AAG+TV + +P L D Sbjct: 414 APLLEAYGGHRQAAGVTVTAAALAEIQALLAGKQQAAFTCTELAGLPELCERTPLPCDLE 473 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD--SET 540 ++ S N+ L++ P+G NP PV A+ + +R + + QD Sbjct: 474 VDLSVCNVTNWQELQNLQPFGESNPEPVLAWQGCTVLQLRKIGKQKQHLQLLLQDKAGRR 533 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ I F G + + ++ + G L +N W+G QLRV+D Sbjct: 534 IKGIFFG--GGYWADAITAPV--KLDLLGVLQINTWQGLTEAQLRVVDI 578 >gi|257138618|ref|ZP_05586880.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia thailandensis E264] Length = 668 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 164/520 (31%), Positives = 250/520 (48%), Gaps = 20/520 (3%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + A+ +H + ++AR+ R + S + ++ L+P P L Sbjct: 3 RIVTRPAVPAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKG 56 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 C AA + A+ K+++ DYD DGA + A+ +R L + +P+R GYG Sbjct: 57 CADAAALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P ++E L+ITVD G S D + A +GIDV+V DHH A A+VNP Sbjct: 117 TPEIVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNP 176 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDVV 254 N+ H+ GV+F VL+ + LR L LLDLVAL TV DVV Sbjct: 177 NQPGCAFPSKHIAGVGVMFYVLLALRAELRARGAFGDARPEPRLDGLLDLVALGTVADVV 236 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLGYMIGPSINAGGRIG 312 L G NR V +GL R A + R +A +LG+ +GP +NA GR+ Sbjct: 237 RLDGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + +LG L +DD LA +LD +N+ RR +E+ M +QA A + + D +A+ I Sbjct: 297 DMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLAS--VDPAEAATIT 354 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSIEGFDIGKMVSFA-- 428 + WH G++G++A RLKE+F RP+F + + GSGRSI GF + + Sbjct: 355 LFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISK 414 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 E ++V GGHAMAAG+T++ N R F+ A + V + DG L + Sbjct: 415 REPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYF 474 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH 528 ++++L+ A +G G P P+F+ + S +V H Sbjct: 475 TPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKH 512 >gi|241668921|ref|ZP_04756499.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877453|ref|ZP_05250163.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843474|gb|EET21888.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 580 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 141/569 (24%), Positives = 250/569 (43%), Gaps = 31/569 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +AR++ +R + + L SI+ L P + D DKA R+ QA+ N+E I + Sbjct: 20 GYDLFLARIISSRVSNFENIDLILKGSIKDL-SSPFLFKDIDKAVDRLFQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFINE--GAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFNYPQEKIRSYIGHRMQEGYGLSESLMNRILTDSIRPN 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NP + D + Sbjct: 139 LIITADNGSTDEPRIAVLKQNGIDTIVTDHHGIPPEGAPKSAIAVLNPTQHDCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R Q+ K + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMTALRRKYLQNGKSLSKSYGLSNLLDFVAIGTVADCVSMANSHNNRIVTKL 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + L +++E + + I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNDRLCWDFL-----DKEKLSSEYISFSIAPLLNSDGRVSDALGSVSFLLENDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E L N R+ ++ + +A K +D + + D H GI G+ Sbjct: 314 LKIEETFENLTKQNNQRKEIQKKLTYEAITKAHQLDNDNN---SLCILLDDGHSGIHGIT 370 Query: 387 AARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAM 442 A+R+KE FG+P + + GS RS++ +I ++ +++K GGH Sbjct: 371 ASRVKEMFGKPVIIFSETQNDPNLISGSARSVDSINIKTILDTIALKSPTLMIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPAL--ITTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+ + +F D F+ N + P+ + D L+ + + +++ +ES Sbjct: 431 AAGLTINKSDFNTFYDLFESEIINFIKNDSISLEPILEYDFELDENDFKLQILEKIESLE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F + ++++R+V H Q+ ++ +++AI F + E + Sbjct: 491 PFGREFEKPLFY-NSFTIENLRLVGKDKNHAQLILRYKNIPSIKAIWFNALENKIIEQIA 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 G + L + G L + Sbjct: 550 I--GDTIKACYELQKEEFLGQTNLSLNIK 576 >gi|254430944|ref|ZP_05044647.1| single-stranded-DNA-specific exonuclease RecJ [Cyanobium sp. PCC 7001] gi|197625397|gb|EDY37956.1| single-stranded-DNA-specific exonuclease RecJ [Cyanobium sp. PCC 7001] Length = 643 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 141/515 (27%), Positives = 250/515 (48%), Gaps = 19/515 (3%) Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 A R+ +A E + I GDYD DG S AL++ L IP R+ +GYG N + Sbjct: 86 AVTRLERACRQGEAVAICGDYDADGMTSTALLLGVLERLGARPVAAIPSRMEEGYGLNAA 145 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++E+ ++G +L++TVD G + DAL A ++VIV DHH + ++ P AL++P R Sbjct: 146 MVERLEHQGVKLLVTVDNGIAATDALLRAEALAVEVIVTDHHSIPAQLPPLLALLHPQRT 205 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + S L G+ +++ + + + + L DL + T+ D+ PL G+N Sbjct: 206 PEDSPFRGLAGVGLAYVLAAALCQAMGR------PDALQMARDLFCIGTIADMAPLSGVN 259 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 R +++ GL + G GL+AL + P+ A+ +G+ I P INA GR+G+ L Sbjct: 260 RRWLIDGLPRLGQSGLAGLQALQQVAGVEDRPLDAQAVGFQIAPRINAVGRLGDPALVVE 319 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWH 379 LL + D + LA + + LN+ RR + A+ +A A + Q+ +++ WH Sbjct: 320 LLTTADPERALELAGQCEALNRQRRELCEAIEAEALALLEADGP--QRPRFLLLAQGHWH 377 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGG 439 G++G++AARL E+ G P+ ++ E G S R+ GF + + + +L + GG Sbjct: 378 HGVIGIVAARLVERLGLPAALLAGEGGGLMRASVRAPRGFAVDEALHHC--ADLLERHGG 435 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 H A G TV + RL + A + + + + +L ++ + L+ Sbjct: 436 HPAAGGFTVRAEHVARLHERLDALAGDWLDRHGGGHPVEPEALLRLEQIDRDFLHHLQRL 495 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 P+G G+P PVF +++ +++ HLQ+ SQ +++A+ +R G Sbjct: 496 EPFGIGHPQPVFWSAGCRVKQQKLLRGGHLQLEL-SQGERSVRAMGWRWQGGADLPLW-- 552 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + V + ++ W+G +R QL ++ E Sbjct: 553 -----VDVAYRVKLDRWQGRERLQLELVGLRGSES 582 >gi|167626485|ref|YP_001676985.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596486|gb|ABZ86484.1| single-stranded-DNA-specific exonuclease [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 580 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 140/569 (24%), Positives = 249/569 (43%), Gaps = 31/569 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +AR++ +R + + L SI+ L P + D DKA R+ QA+ N+E I + Sbjct: 20 GYDLFLARIISSRVSNFENIDLILKGSIKDL-SSPFLFKDIDKAVDRLFQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFNYPQEKIRSYIGHRMQEGYGLSESLMNRILTDRIRPN 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NP + D + Sbjct: 139 LIITADNGSTDEPRIAVLKQNGIDTIVTDHHGIPPEGAPKSAIAVLNPTQHDCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L++ + R Q+ K + ++ L +LLD VA+ T+ D V + NR Sbjct: 199 AGCMVAWLLMTALRRKYLQNGKSLSKSYGLSNLLDFVAIGTIADCVSMANSHNNRIVTKL 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + L +++E + + I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNDRLCWDFL-----DKEKLSSEYISFSIAPLLNSDGRVSDALGSVSFLLENDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E L N R+ ++ + +A K +D + + D H GI G+ Sbjct: 314 LKIEETFENLTKQNNQRKEIQKKLTYEAITKAHQLDNDNN---SLCILLDDGHSGIHGIT 370 Query: 387 AARLKEKFGRPSFAI--SFEEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKGGGHAM 442 A+R+KE FG+P + + GS RS++ +I ++ +++K GGH Sbjct: 371 ASRVKEMFGKPVIIFSETQNDPNLISGSARSVDSINIKTILDTIALKSPALMIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+ + +F D F+ N + P+ + D L+ + + ++ +ES Sbjct: 431 AAGLTINKSDFDTFYDLFESEIINFIKNNSICLEPILEYDFELDENDFKLQTLEKIESLE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F + ++++R+V H Q+ ++ +++AI F + E + Sbjct: 491 PFGREFEKPLFY-NSFTIENLRLVGKDKNHAQLILRYKNIPSIKAIWFNASENKIIEQIA 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 G + L + G L + Sbjct: 550 I--GDTIKACYELQKEEFLGQTNLSLNIK 576 >gi|307254246|ref|ZP_07536087.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306862793|gb|EFM94746.1| Single-stranded-DNA-specific exonuclease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 496 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 158/476 (33%), Positives = 241/476 (50%), Gaps = 14/476 (2%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 ++ R+ +R ++ L S++ L P L + ++A ++ A +I+I GD Sbjct: 20 PLLNRLYQSRGINSVQE---LERSLQYLYR-PQQLANIEQAVSLLIDAFKQQSRIVIVGD 75 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +D DGA S AL + L N + IPDR GYG + ++ E + +GA L+ITVD G Sbjct: 76 FDADGATSTALTILALRQLGFKNVDYLIPDRFSQGYGLSVAVAEMVLAKGADLVITVDNG 135 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 +S++ + I V+V DHH A A+VNPN D L GV F V+ Sbjct: 136 ISSFEGIALLKLHHIKVLVTDHHLPAETLPNADAMVNPNLADCSFPSKSLAGVGVAFYVM 195 Query: 220 VLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNP 277 + + +R+ +L LLDLVAL TV DVVPL NR V +GL R Sbjct: 196 LALRSQMREAQLFSLKEPNLAELLDLVALGTVADVVPLDHNNRILVHQGLTRIRSGHCRA 255 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G++AL E S + A +LG+ I P +NA GR+ +LG LLI+++ + LA +L Sbjct: 256 GIRALAEVSKRELSSLQAGDLGFAIAPRLNAAGRLENMSLGVELLIAENMEIARQLAFEL 315 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA--SVIVVEGDRWHPGIVGLLAARLKEKF 394 D LNQ R+ E M +A A +Q+ I + WH G++G+LA+R+K++F Sbjct: 316 DSLNQTRKEFEQEMKTEALAICANLPSLMQKDQAHGIALYQADWHQGVIGILASRIKDQF 375 Query: 395 GRPSFAISFEEDG--KGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVER 450 RP A + E + GS RSI G + ++ ++VK GGHAMAAGLT+ + Sbjct: 376 HRPVIAFAQESENSEYLKGSARSIAGLHMRDLLERIDVKHPNLIVKFGGHAMAAGLTIHQ 435 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 NF + F + I+ V DG L+++ +NI + ++L+ AGP+G Sbjct: 436 NNFLKFQHIFDEVIDEIIAPEQLQGVIYTDGELSSNELNIHIAELLQKAGPWGQSF 491 >gi|254373996|ref|ZP_04989478.1| single-stranded-DNA-specific exonuclease [Francisella novicida GA99-3548] gi|151571716|gb|EDN37370.1| single-stranded-DNA-specific exonuclease [Francisella novicida GA99-3548] Length = 580 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 NKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYKLFENEITDIITKQNIILEPSIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F ++++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGREFEKPLFCNQFV-IENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|218288850|ref|ZP_03493101.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus acidocaldarius LAA1] gi|218240939|gb|EED08116.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus acidocaldarius LAA1] Length = 669 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 150/564 (26%), Positives = 250/564 (44%), Gaps = 22/564 (3%) Query: 30 ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 A + +P VAR+L R D + L + DP+ T+ A RI+QA Sbjct: 15 ARRLASVLGMPVRVARLLAARGYEDPDEVRRLLTADVP--WSDPMDFTEMGAACERILQA 72 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + E I + GDYDVDG ++ ++ + + +IP+R+ DGYG + L+E +E Sbjct: 73 VRRREIIAVIGDYDVDGVSAAVIVTKAIQALGGRVTCHIPERVSDGYGFSLRLLEDAKSE 132 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL-VNPNRLDDLSGQG 207 GA LI+TVD G + +A+ A G+ V+V DHH+ E +P ++ R D Sbjct: 133 GAALIVTVDNGIRAVEAITAALAHGLSVVVTDHHEPGDEVVPDGVPVIHFTRHRDPISAK 192 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 C A V + + + L L+ L AL T+ D++PL+G NR V +G Sbjct: 193 RGCGAFVAWKLATQLLDAAGVPKGDALRIWLM---GLAALGTLADMMPLVGENRRLVREG 249 Query: 268 LMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 + V G+ G + L + + ++A ++ + + P +NA GR+ ++L RLL+++D Sbjct: 250 MRVLASAGSAGWRVLCDCARVSRDTLSASDVSWRLVPRLNAAGRMAHADLAYRLLMAEDE 309 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +E + LA +++VLN RR A + V + +V W G+VGL+ Sbjct: 310 EEAKRLAEEIEVLNAKRREAVDAAFAEVLEVVEREHG---PNPAAIVVAGAWPLGVVGLV 366 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 AARL + + P+ A++ DG GSGR+ EG + ++ L GGH A G Sbjct: 367 AARLAQTYACPAIALADMGDGTLRGSGRAPEGASMLDLLGRC--ADFLDHFGGHEAAVGC 424 Query: 447 TVERVNFGRLCDFF--QKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 ++ + + F + P+ D L S L+ LE P+G Sbjct: 425 GLDASQLPKFREAFLEAATVARQNGTAVDPPIAIADDYLMLSESADELLVWLERLAPFGP 484 Query: 505 GNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 + F ++ + HL++ ++ +A+ FR E + + Sbjct: 485 EHEPFRFFVGPVEIVRCARMGGGEHLKLVL-AEGGAHQEAVWFRA-----PEIIARDTSG 538 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587 L N WRG+ R QLR+ Sbjct: 539 LWAFVVELVPNAWRGAVRPQLRID 562 >gi|291295247|ref|YP_003506645.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus ruber DSM 1279] gi|290470206|gb|ADD27625.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus ruber DSM 1279] Length = 644 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 163/579 (28%), Positives = 253/579 (43%), Gaps = 52/579 (8%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W + + ++ IP + A V NR L P + L D Sbjct: 2 KWRLREW-PHVAELRPLIEQLGIPPLAAAVFWNRGFRRKED---LEPPLVCLPID----- 52 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +AA RI++A+ E+I + GDYD DG AL++ L + +IP R+ +GYG Sbjct: 53 GLKQAALRIIEALEKRERIRVHGDYDADGLTGTALLLNGLERLGAEIHAFIPHRLEEGYG 112 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + + L ITVDCG T++ L+ G+ V+V DHH + P V+ Sbjct: 113 VLMDRVPEHLE-ACDLFITVDCGITNHAELRALVENGVSVLVTDHHSPGAAPPPGLV-VH 170 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P L GQ H +GV FL+L +Y +L +D L DL A+ TV DV PL Sbjct: 171 PALSPGLQGQAHPTGSGVAFLLLWQVYELLGRDPP-------LEYADLAAIGTVADVAPL 223 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 G NRA V +GL R N GLK L +A + + I P INA R+G++ + Sbjct: 224 QGFNRALVQEGLRRLRDSANLGLKVLAAE--HCQEFSASEIAFRIAPRINAASRLGQAGI 281 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL + D + +LA +L LN R+ +E AMLE+ + +V+ Sbjct: 282 ALELLTTQDVLQAGVLAERLTQLNVQRQRIEEAMLERIWPTL------DPTHPALVIHDA 335 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 HPG++G++A+R+ E++ +P F I+ +G GS RS G + A L + Sbjct: 336 EGHPGVMGIVASRVLERYYKPVFIIA-----EGKGSVRSTPGISAVGALQSARAY--LER 388 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHA AAG + + ++A + P +DG L+ ++ L L Sbjct: 389 FGGHAQAAGFAIRESQIPAFTEAIHRYAAQFP---VPEPEIVLDGWLDGEDLD-ELHRAL 444 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555 + P G GNP P+F + + +R + HL ++ + +R G L E Sbjct: 445 QLLEPLGEGNPEPLFYTQG-RPEYVRTMGEGKHLSFRLNG-----VRVVKWRDNGERLPE 498 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 L + G +N W G + +LR P+ Sbjct: 499 ALELAAGLA--------LNRWNGEQSIELRAQAYRPLTA 529 >gi|27262342|gb|AAN87452.1| Single-stranded-DNA-specific exonuclease recJ [Heliobacillus mobilis] Length = 534 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 174/516 (33%), Positives = 262/516 (50%), Gaps = 36/516 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RWV Q + + +L R + D A+ F+ SI M D L+L Sbjct: 10 RWVFPKQQSMPPYP-------GLSPFQSALLWRRGIKPDDAEAFIRSSIDD-MHDSLLLK 61 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D KAA+ I QAI N + ++GDYD DG ALM+ L + YI R VDG+G Sbjct: 62 DAGKAAQLIRQAIDNQTPVTVYGDYDCDGVTGTALMVESLRKLGAQVDWYINSRFVDGFG 121 Query: 137 PNPSLMEKFINE--GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +P+ +E+ +LI++VD G ++ A+Q A G+ V+V DHH+ SE PA A+ Sbjct: 122 MHPNGVEEIARRGGHPRLIVSVDNGISAVTAVQRAKELGMQVVVTDHHEPGSELPPADAI 181 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP + D L GV F VL +++ N+ +LL LDLVA+ TV DV+ Sbjct: 182 VNPRQADCPYPYKSLAGVGVAFKVLQILF------NEAGCPRELLRSLDLVAIGTVADVM 235 Query: 255 PLIGLNRAYVVKGLMVARR--QGNPGLKALIERVNISSPITA-ENLGYMIGPSINAGGRI 311 P+ G NR +V GL + + GL+A+ E + + A +LG++ GP +NA GR+ Sbjct: 236 PVTGENRIFVKNGLKLINWGERARTGLRAIKEVAALHREVNAHYHLGFIFGPMLNATGRL 295 Query: 312 -GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 G LL++ D + LAM+L +NQ R+ M ++A V Q+ S Sbjct: 296 DGVPATAVDLLLTRDYAQARALAMELKDVNQQRQEMTRRQTDKATRLVN------QRDSF 349 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAV 429 +VV +H GIVGL+A+RLKE++ RP ++ ED G GS RS++GF + + + Sbjct: 350 LVVYDPEFHEGIVGLIASRLKEEYYRPVLVLTDSEDAGILKGSVRSVKGFSVKEHLIDDC 409 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 +L KGGGH MAAG ++ R N L + + A + V + TP+ +ID +L ++ Sbjct: 410 A-DLLTKGGGHEMAAGCSLPRENLPLLRERLNRAAGS-VSPELFTPLLEIDYLLRPEDLD 467 Query: 490 IALIDMLESAGPYGAGNPNPV-------FAFPNHKL 518 + LI+ +E PYG G P P F ++ Sbjct: 468 MVLIEEIEQFAPYGVGCPRPNILLAHTHFGTEQVQV 503 >gi|224372306|ref|YP_002606678.1| single-stranded-DNA-specific exonuclease RecJ [Nautilia profundicola AmH] gi|223588864|gb|ACM92600.1| single-stranded-DNA-specific exonuclease RecJ [Nautilia profundicola AmH] Length = 520 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 165/556 (29%), Positives = 259/556 (46%), Gaps = 56/556 (10%) Query: 52 VSIDYAKDFLNPSIRLL----MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107 ++ ++ L+ I L +P L+L+D KA++R+V AI N EKI++ GDYDVDG + Sbjct: 2 LTKAKIREILSNRIEELSSSNLPHFLLLSDIKKASKRVVNAIKNKEKIVVVGDYDVDGVS 61 Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 S A+M F + + IPDR DGYG P L+E+ A LIITVD G TS++A + Sbjct: 62 SSAIMKLFFEKIKFDIEVVIPDRFKDGYGLTPGLLERI---EADLIITVDNGITSFEAAE 118 Query: 168 YATNQGIDVIVIDHH--------------QVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 + +D+I+ DHH + + + AYA++NP D +C A Sbjct: 119 ICKQKRVDLIITDHHTPLIMDKVKCNMENEERFKLPDAYAIINPKTSPD-FPFKEICGAE 177 Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 V + + I ++ DL D++A+A + DV+PL +NR V GL + Sbjct: 178 VAWYLCAAIKSEMKLK------IDLREFTDILAIAIIADVMPLTHMNRTLVNMGLKRLNK 231 Query: 274 QGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 P KAL N AE++ + I P +NA GR+ + + LIS + Q+ L Sbjct: 232 AVKPFSKALKRFFNKD--FKAEDIAFQIAPRLNAAGRMFHAGVAYEFLISKNEQKAFDLL 289 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 M+LD LN R+ E +E E + ++ +H G+VG++A+RL K Sbjct: 290 MELDGLNNLRKETEKEAVESIE----------EITDDFIIVKGDFHEGVVGIIASRLVHK 339 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453 + +P+ E +G GSGRS+ DI +V+ E +L GGH MA GL+++ NF Sbjct: 340 YKKPAIVF-CENNGILKGSGRSLGNIDIFSLVNECKE--LLEGFGGHKMACGLSLKEENF 396 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 L + G L ++I L+D+L+ P+G GNP P F Sbjct: 397 EELKKVLNNKISKYSKDDFFIED-YVLGELPFKEIDIELLDILQEFEPFGEGNPKPKF-I 454 Query: 514 PNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 N K++ ++ + H ++ SQD L A+ FR G + + Sbjct: 455 ANAKIEHVQNLKENHFKLIL-SQDDIVLPAVIFRFEGEFKDSLYFK---------FSINE 504 Query: 574 NYWRGSKRCQLRVLDA 589 N + G QL + + Sbjct: 505 NSYYGR-SVQLMIEEI 519 >gi|126733218|ref|ZP_01748965.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. CCS2] gi|126716084|gb|EBA12948.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp. CCS2] Length = 458 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 194/465 (41%), Positives = 272/465 (58%), Gaps = 9/465 (1%) Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDRI +GYGPN + M + LII VDCG+ S+ + AT G DVIV+DHH Sbjct: 2 PDRIDEGYGPNDAAMSALAKDH-DLIICVDCGTLSHGPIAAAT--GADVIVLDHHLGGET 58 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 A A+VNPNR D+ HLCAAGVVFL+LV + R LR+ + DL+++LDLV L Sbjct: 59 LPKAIAVVNPNRQDESGELAHLCAAGVVFLMLVDVNRQLREAGQ--KGPDLMAMLDLVGL 116 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 ATV DV PL G+NRA+V +GL V R+ GL AL + + T+ +LG+++GP +NA Sbjct: 117 ATVADVAPLTGVNRAFVRQGLTVMARRNRVGLTALADVAGLDQAPTSYHLGFLLGPRVNA 176 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GGRIG+++LG+RLL ++D E E +A KLD LN +RR +E+ + + A + + D Sbjct: 177 GGRIGKADLGARLLSTNDPVEAEAMAAKLDELNTDRREVEAQVRDLALEQATVRGLDG-- 234 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ G+ WHPG+VG++AARLKE RP+ I + +G GSGRS+ G D+G + Sbjct: 235 -PLVWAAGEGWHPGVVGIVAARLKEATNRPAIVIGL-DGDEGKGSGRSVSGIDLGAAIQR 292 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 ++G+L+KGGGH MAAGLTV R + A I I G+L A Sbjct: 293 TAQDGLLIKGGGHKMAAGLTVARDKLDDAMVRLGELLAKQGAADIGPADLNISGILMPGA 352 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 I LI +E AGP+GAG P P FAFP+ ++ + V HL+++F + I+F Sbjct: 353 ATIDLITQIEDAGPFGAGAPAPRFAFPDCQIHFAKQVGANHLKISFGDGMGGRIDGISFG 412 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 P+G LM G R H+ G L +N W+G + QLR+ D +P Sbjct: 413 AMDGPMGPMLMNHNGARFHLVGRLEINTWQGRQSVQLRLEDTAPA 457 >gi|89256862|ref|YP_514224.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica LVS] gi|115315243|ref|YP_763966.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. holarctica OSU18] gi|156503036|ref|YP_001429101.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009245|ref|ZP_02274176.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. holarctica FSC200] gi|254368138|ref|ZP_04984158.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica 257] gi|254369739|ref|ZP_04985749.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica FSC022] gi|89144693|emb|CAJ80024.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica LVS] gi|115130142|gb|ABI83329.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. holarctica OSU18] gi|134253948|gb|EBA53042.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica 257] gi|156253639|gb|ABU62145.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122698|gb|EDO66827.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica FSC022] Length = 580 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQAVQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID I+ DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P+ + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|254372535|ref|ZP_04988024.1| hypothetical protein FTCG_00097 [Francisella tularensis subsp. novicida GA99-3549] gi|151570262|gb|EDN35916.1| hypothetical protein FTCG_00097 [Francisella novicida GA99-3549] Length = 580 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID I+ DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIITDHHAIPPEGTPQSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFENEITDIITKQNIILEPSIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|118497168|ref|YP_898218.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. novicida U112] gi|194323466|ref|ZP_03057243.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. novicida FTE] gi|118423074|gb|ABK89464.1| single-stranded-DNA-specific exonuclease [Francisella novicida U112] gi|194322321|gb|EDX19802.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. novicida FTE] Length = 580 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 137/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P+ + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFENEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|78778275|ref|YP_394590.1| RecJ exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78498815|gb|ABB45355.1| exonuclease RecJ [Sulfurimonas denitrificans DSM 1251] Length = 537 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 150/523 (28%), Positives = 258/523 (49%), Gaps = 31/523 (5%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +PDP +L D KAA++I AI ++KI + GDYDVDG ++ A+M+ F IP Sbjct: 39 IPDPSLLHDAPKAAKKIADAIRENKKITLVGDYDVDGVSATAIMVDFFRQIPYPLEAVIP 98 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R DGYG +P L+E+ LIITVD G T+ +A + +GI++I+ DHH + Sbjct: 99 NRFSDGYGVSPHLLERI---DTDLIITVDNGITALEAAEICAQRGIELIITDHHTPLTTL 155 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 AYA++NP +C A V +L+L L ++ LN D+ S LD++ +A Sbjct: 156 PHAYAIINPKLSACSYPFQEICGAQVAWLLLAL------LKKELNLNIDMRSFLDILCIA 209 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + D++PL +NR V GL V + + +N I++E++ + I P IN+ Sbjct: 210 IIADIMPLTDINRPLVKDGLKVLMSSNRASCVIIRDFLN-KKNISSEDIAFQIAPRINSA 268 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ ++++ L + + M L+ LN++RR +E+ ++A + Sbjct: 269 GRLEDASIALEFLTAQTLNKAYMQFEILNSLNESRRELEAEATKEALSIANG------ND 322 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 VIVV + WH G+VG++AAR+ E + RP+ ++ E+G GS RS+ +I K++ Sbjct: 323 KVIVVAKEEWHEGVVGIVAARVAEHYTRPTIVLT-LENGVAKGSARSVGNVNIHKLIEE- 380 Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 L K GGH MAAGLT+ + + A + + ++ GV+ ++ + Sbjct: 381 -NSHFLRKFGGHKMAAGLTLNEKDIDAFRVAINESASK-LSLDDFLSLDEVIGVVPSNQI 438 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQD--SETLQAI 544 ++ L+ +LES PYG N P+F + + ++ H ++ + S L+ I Sbjct: 439 DLELLALLESFEPYGEANKRPLFLIRDASILEVKTFGKDSSHSKVKIMQSNEESSILELI 498 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 F+ + L S ++ + + N + QL + Sbjct: 499 QFK-------KILNLSTADKLTCSYRVVKNEFNSKISAQLIID 534 >gi|134302444|ref|YP_001122414.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. tularensis WY96-3418] gi|134050221|gb|ABO47292.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. tularensis WY96-3418] Length = 580 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID I+ DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P+ + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGRKFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|309389850|gb|ADO77730.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium praevalens DSM 2228] Length = 768 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 141/551 (25%), Positives = 262/551 (47%), Gaps = 27/551 (4%) Query: 43 VARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 +A + R + + + +F++ + + + I+ I +I+I+GDY Sbjct: 24 IASLAEKRGLNTKEKLINFIDTNQYSAF-NIFDFPQIKECVAFILAHIKQGSRILIYGDY 82 Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 DVDG S +++ LS + N + +IPDR +GYG N ++ + + L+I+ DCG + Sbjct: 83 DVDGITSTSILFGALSSLTKNIDYHIPDRFKEGYGLNKEVLASYKS-KVDLVISCDCGIS 141 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 +Y +++A GID +V DHH + ++ PA +++P L + L AG+ + ++ Sbjct: 142 NYQEVEFAKKNGIDFVVTDHHDLPNKLPPADYVISPRLLPEDHQAYWLPGAGMAYFLIKA 201 Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281 +++ L ++ + LDL+ LA + DVVPL G NR GL + GLKA Sbjct: 202 VFKKLGREGEEK------EFLDLLLLAIIADVVPLKGENRYLFKTGLKKLQNTNRIGLKA 255 Query: 282 LIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340 L + I+ I + LG+ IGP +N+ GR+ +++ G LL++ + LA +L +N Sbjct: 256 LYNELEINPLEINEKTLGFQIGPLLNSAGRVDKASKGVELLLAQAKDKAAGLAAELKQIN 315 Query: 341 QNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400 Q R+ + + + + ++ +Q ++ WH G++G+ A R+ E + P+ Sbjct: 316 QYRKEISQRIYLEIDQQLDSQQQQ-----AVIAYNSDWHQGVIGIAAGRISENYQVPAVL 370 Query: 401 IS-FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 ++ E G GS RSIE +I +++S +L K GGHA AAG ++++ + Sbjct: 371 MTSNPESGLITGSARSIENININQLISEC--SDLLEKNGGHAAAAGFSLKKDRLEKFKLR 428 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 Q+ + + + K D L + + L P+G GNP P+F + L Sbjct: 429 LQRLIDQKLKKIDSEIEIKTDLKLELAEITENFYQKLRLFAPFGEGNPEPLFYLETNILS 488 Query: 520 SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 S + H ++ ++ S+ + A+ + + K + HL N +RG+ Sbjct: 489 SREISAGRHKKLILGTE-SDKITALWWWAGEIE--------KNKSQQIAAHLTENIYRGN 539 Query: 580 KRCQLRVLDAS 590 K QL + + Sbjct: 540 KSLQLEIKALA 550 >gi|269926147|ref|YP_003322770.1| single-stranded-DNA-specific exonuclease RecJ [Thermobaculum terrenum ATCC BAA-798] gi|269789807|gb|ACZ41948.1| single-stranded-DNA-specific exonuclease RecJ [Thermobaculum terrenum ATCC BAA-798] Length = 564 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 153/517 (29%), Positives = 255/517 (49%), Gaps = 20/517 (3%) Query: 41 DIVARVLVNRN-VSIDYAKDFL--NP--SIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 R+L++R VS+ F NP + L+ +PL L D ++AA I++AI N+E I Sbjct: 21 PATERLLLSRGLVSVHDRDLFFVENPLYQLGDLLGNPLELPDAEQAAFEILKAINNNEDI 80 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 I+GDYDVDG + A++ R L V YIP RI +G+G N + +G + ++T Sbjct: 81 WIYGDYDVDGVTASAILGRGLKQLGVTPKFYIPHRIDEGFGLNKDAIATIAEKGCKTLVT 140 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 VDCG+++ + ++YA + G+ VI+ DHH SE +VNP R AGV Sbjct: 141 VDCGASNVEEVEYAKSLGLRVIITDHHTTTSEIDFPVPVVNPIRQTGNYPYREHTGAGVA 200 Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 + L I ++ ++ L+ L AL T+ DV PL G NR V GL R Sbjct: 201 YSFLRAIVYKSPIRKRIKVHP----LIQLAALGTIGDVAPLTGENRLLVKAGLQSMRTVP 256 Query: 276 NPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 GL+AL +R ISS + +L + I P +N+ GR+ + + +LL++DD+ + ++M Sbjct: 257 LVGLRALFQRSGIISSFVNEADLAFKIVPRLNSAGRMSHAKVALKLLLTDDALDAFKISM 316 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 L+ LN R+ +ML +A + + ++I V D W P ++G++AA+L ++ Sbjct: 317 HLEKLNALRKATTDSMLVEAREMI--ESGTALNGNIITVAKDGWSPALLGIIAAQLVREY 374 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 G+P + K S RSI G DI ++ ++++ GGH+ AAG T + + Sbjct: 375 GKPVIV-ASISGDKARASVRSITGKDIMIPLNNC--SSLMLEFGGHSHAAGFTCKVSDLQ 431 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 + NI ++D ++ +N L ++L P+G GNP P F Sbjct: 432 DVHHHLDAEIPNISAIEDLP---EVDIEVSPQDINEDLSNLLCRMAPFGQGNPEPRFGIS 488 Query: 515 NHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVY 549 + ++ +I++V HL+ E ++ + F Sbjct: 489 DVQMHNIQLVGSEFSHLKFEIEGASGRRIEVLGFGAG 525 >gi|307546445|ref|YP_003898924.1| single-stranded-DNA-specific exonuclease RecJ [Halomonas elongata DSM 2581] gi|307218469|emb|CBV43739.1| single-stranded-DNA-specific exonuclease RecJ [Halomonas elongata DSM 2581] Length = 603 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 177/595 (29%), Positives = 270/595 (45%), Gaps = 29/595 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNR--NVSIDYAKDFLNPSIRLLMPDPLILT 76 + ++ A+ + + + AR+L R + + A + PS+R L P L Sbjct: 15 ILPRPRDAAVEQRALAE--GLTPLQARILAGRLGGYTGELAP-LVAPSLRYLAH-PERLQ 70 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC-SV---NANMYIPDRIV 132 D +AA RI +A+ E I I DYDVDG S ++ R L+ + + I RI Sbjct: 71 DGRRAAERIARAVTEGEHIGILTDYDVDGITSHVVIRRTLNELFGIPENRLHSLIGHRIH 130 Query: 133 DGYGPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGYG + L+E+ ++ L+IT DCGS+ + GIDV+V DHH + +E P Sbjct: 131 DGYGISLPLVERTLSLSPRPSLVITADCGSSDEPRIARLREAGIDVVVSDHHALPTEGPP 190 Query: 191 --AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVAL 247 A+A VNP R D + V +LV+ L +L + P L L VAL Sbjct: 191 ASAFATVNPTRDDCTYPDPTIAGCMVAWLVMSLTRSVLIEWGVLEPATPKLSPWLSYVAL 250 Query: 248 ATVCDVVPLIGL--NRAYVVKGLMVARRQGNPGLKALIERVNISSPITA-ENLGYMIGPS 304 TV D V L G NRA V GL + R + + +R+ S E L + +GP Sbjct: 251 GTVADCVSLGGSAANRAVVAHGLTLINRMEAACWRTMAQRLGDDSVPFDAETLAFQMGPR 310 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA R+ + +++ D LD NQ+R+ +E+ M E+A + + + Sbjct: 311 INARSRLDDPYAALHFMLAADDATAARHLETLDQDNQSRKAIEAEMTERARGLAMAELEA 370 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGK 423 A ++VV + HPG+ G++A+RL + FGRP+ ++ + G GSGRSIE + Sbjct: 371 --GAPLLVVLLEEGHPGVQGIVASRLVQAFGRPALVLTPAAQPGMLTGSGRSIEALHLRD 428 Query: 424 MVSFAVE--EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + A E L + GGH AAG+ V R F + + P DG Sbjct: 429 ALQRAYELAPASLPRFGGHRGAAGVGVPREAFDDFRQALLQAVSEQLGETELGPRVFTDG 488 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE 539 L A + + +D LE+ GP+G P+F + +S+R V +HL + S + Sbjct: 489 ELEADQLALETLDELEALGPFGREFDAPLFEG-VLRAESLRTVGADGSHLMLELSS-GAT 546 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 +++AI FR GE G + L N WRG + QL + A P E Sbjct: 547 SIRAIWFRALTP--GEMPAFDAGDLLRCAYKLNRNRWRGRESLQLIIEHAEPTEA 599 >gi|56707620|ref|YP_169516.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis SCHU S4] gi|110670091|ref|YP_666648.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis FSC198] gi|224456690|ref|ZP_03665163.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|254370137|ref|ZP_04986143.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis FSC033] gi|254874440|ref|ZP_05247150.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|56604112|emb|CAG45111.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis SCHU S4] gi|110320424|emb|CAL08494.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis FSC198] gi|151568381|gb|EDN34035.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis FSC033] gi|254840439|gb|EET18875.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis MA00-2987] gi|282158777|gb|ADA78168.1| Single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. tularensis NE061598] Length = 580 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 249/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ +A+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYKALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID I+ DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFNIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F +L F+ +I+ P+ + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKLYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGRKFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|124267936|ref|YP_001021940.1| exonuclease RecJ [Methylibium petroleiphilum PM1] gi|124260711|gb|ABM95705.1| exonuclease RecJ [Methylibium petroleiphilum PM1] Length = 581 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 165/597 (27%), Positives = 261/597 (43%), Gaps = 42/597 (7%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 + A ++ ++ + ++AR+ R ++ L+ S+ LL+P +L Sbjct: 2 QIAVRDVPPRTAWSL-EQAGVSPLLARLFAARGITAAEQ---LDDSLALLLPPTALLGAA 57 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDGY 135 D A +I++ DYD DGA + A+ +R L +PDR V GY Sbjct: 58 DAARLLADAT-QQRRRIVVVADYDCDGATACAVALRGLRLLGATPETLGYVVPDRQVHGY 116 Query: 136 GPNPSLMEKFI----NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 G P++++ + +++TVD G S D + +A +G+ V+V DHH ++ Sbjct: 117 GLTPAIVDLAFGVFGGQAPDVLVTVDNGIASLDGVAHAKARGLQVLVTDHHLPALQDDRV 176 Query: 192 Y-----ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLSLLDL 244 +VNPN+ L GV+F VL+ + LR L +LLDL Sbjct: 177 VLPTADVIVNPNQPGCPFESKALAGVGVMFYVLLALRSELRSRGVFDAAAQPRLDALLDL 236 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYMIG 302 VAL TV DVV L NR V +GL R + + + G+ +G Sbjct: 237 VALGTVADVVKLDENNRRLVAQGLRRIRSGRMQPGVRALFDAAARDPARASGFDFGFALG 296 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +NA GR+ LG L++DD+ LA +LD +N+ RR +ES M EQAEA + Sbjct: 297 PRLNAAGRMENMTLGIECLLTDDAGRAAELAQQLDAINRERREVESGMREQAEAMLEALV 356 Query: 363 DDI-------QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 + + +H G+VG++A+RLK++ RP+F + +DG GSGRS Sbjct: 357 ARDDHGAGAGDPPPALAIYDPGFHEGVVGIVASRLKDRSHRPTFVFARGQDGLLKGSGRS 416 Query: 416 IEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 I GF + + G+L + GGHAMAAG T+ +F R + A + A Sbjct: 417 IPGFHLRDALDLVSKRHPGLLRRFGGHAMAAGATLAEADFARFERALVQVAGEWLDAAAL 476 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 + DG L A N + LE A +G PVF+ ++ S R+V HL++ Sbjct: 477 QRTLRTDGPLGAEYFNADTVRALE-AQVWGQAFEPPVFSDR-VEVVSQRLVGEKHLKLAV 534 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AI F ++ + L V+ + G +R Q+ V A+ Sbjct: 535 RH-GGALRDAIWFGHSE---------PVAAQVTLAYQLRVDEYNGRQRVQMIVEAAA 581 >gi|282900086|ref|ZP_06308043.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281194968|gb|EFA69908.1| RecJ exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 790 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 160/612 (26%), Positives = 269/612 (43%), Gaps = 52/612 (8%) Query: 17 RWVSLLGQEGINRAL-AITQKHAI-------PDIVARVLVNRNVSID-YAKDFLNPSIRL 67 +W+ L E L A+ +++ I + VA++L R + + +FL+ Sbjct: 2 KWILLENIEIPQDFLQAVQKQYHIRHGSKSKANFVAQILWQRGIRTELELVNFLDFKNYR 61 Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN--- 124 + + A R+ A+ + EK+ I+GD+D DG S AL+ L Sbjct: 62 PASSFEFGEEMNLAVNRLKAAVISKEKVGIWGDFDADGITSTALLWDGLGEFFPQYEQLT 121 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 YIP+R+ + +G N + +E+ +G +LIIT D GST+ D + YA GID+IV DHH + Sbjct: 122 YYIPNRLTESHGLNFAGIERLAQQGCRLIITCDTGSTNIDEIVYAQKLGIDLIVTDHHTL 181 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 +E P A++NP L + HL V + ++ +Y L + P L LLDL Sbjct: 182 PTERPPVSAIINPRYLPETHSLFHLSGVAVAYKLVEALYETLPDIPQNP----LEDLLDL 237 Query: 245 VALATVCDVVPLIGLNRAYVVKGL--------MVARRQGNPGLKALIERVNISSPITAEN 296 VA+ + D+V L G R G+ PG+K L+E + + Sbjct: 238 VAIGLIADLVQLKGDCRYLAQIGIDKLHQESKKGILHSRRPGIKKLLELCQKNGD-RPMD 296 Query: 297 LGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 + + +GP INA R G+ + LL S D + LA + ++ N R+ ++ + EQA Sbjct: 297 ISFGLGPRINAVSRIHGDGSFCVELLTSRDIKRCCQLAQETELANSRRKSLQKDVQEQAR 356 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE----DGKGIG 411 K+ D+ VIV+ +W G++GL+A ++ ++ G+P+ +S + G Sbjct: 357 KKLGEL--DLSTTHVIVLVDSQWPGGVLGLVAGQIAQETGKPTILLSTDSLDSKTNLARG 414 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S RSI D+ ++V + +L + GGH AAGL++ N G D + V + Sbjct: 415 SARSINSIDLYQLVQK--QAHLLHRFGGHPFAAGLSLSVENIGLFTDAINQQFRLSVGGI 472 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRV 523 TP + D V+ + + L L+ P G GNP P N K+Q + Sbjct: 473 NLTPTVQADLVVTVADLGRELFLELKLMEPCGMGNPVPKLLIKNCWFENISHEKIQDYQG 532 Query: 524 VNLAHLQMTFESQDS---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 + +L+ F D + I + L + R + +N + Sbjct: 533 NKIQYLKTKFLMGDDSSQQRFPGIWWGHDKNDLPQ-------GRCDCIVEIDINNNKAQP 585 Query: 581 RCQLRVLDASPV 592 Q+R++D P Sbjct: 586 EHQIRLIDVRPT 597 >gi|187932050|ref|YP_001892035.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. mediasiatica FSC147] gi|187712959|gb|ACD31256.1| single-stranded-DNA-specific exonuclease RecJ [Francisella tularensis subsp. mediasiatica FSC147] Length = 580 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID I+ DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQSYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P+ + D L+ + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGRKFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|222823059|ref|YP_002574632.1| single-stranded-DNA specific exonuclease [Campylobacter lari RM2100] gi|222538280|gb|ACM63381.1| single-stranded-DNA specific exonuclease [Campylobacter lari RM2100] Length = 523 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 149/536 (27%), Positives = 262/536 (48%), Gaps = 31/536 (5%) Query: 58 KDFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF 115 + F+N + L +P P L D K A RI +AI ++K+ I GDYDVDG S ++ F Sbjct: 13 QRFINDTHVKLCDLPMPSCLKDVYKGALRIKEAIEKNQKLAIVGDYDVDGVISCVILSEF 72 Query: 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175 + + IP+R DGYG N ++ + +G LIITVD G ++DA + +GID Sbjct: 73 FDDIGYDYVVKIPNRFKDGYGLNEEIINEL--DGVDLIITVDNGIAAFDAAELCLQKGID 130 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 +I+ DHH + AYA++NP + D +C A V + ++ I + + + Sbjct: 131 LIITDHHMPPAILPKAYAIINPKQQDCDFPDIEICGAQVAWYLVAAIKEVCKIN------ 184 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 +++ ++L+++A + D++ L LNRA V KG+ KA+ + + Sbjct: 185 YNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKQYFGKDK-FELD 243 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 N+ ++I P IN+ GR+ ++ + + L S + E+ ++ N +R+ E + +Q Sbjct: 244 NISFLIAPLINSAGRMDDAIISYKFLHSKNIDEVMGYLEQIITYNNSRKDEERELFKQCL 303 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 +V + VI+V G WH G++G++A+RL + F +P+F S E K S RS Sbjct: 304 EQV------DENDPVIIVNGQNWHEGVLGIVASRLVKHFNKPAFVFSECEQ-KAKASVRS 356 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 + DI ++ A E + GGH AAG+ VE FG + N +P Sbjct: 357 VGRIDILNVIEQAKEFVL--SYGGHKGAAGVLVELEKFGVFKSKLYEICQN-IPKDDFYN 413 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTF 533 ++ G ++ + V+ L+++LE P+G NP P F F +++ R + H+++ Sbjct: 414 ADEVLGSIDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKRKLGKDENHMKLIL 473 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 +Q ++TL+A+ F P G+ + + + N +RG QL + + Sbjct: 474 -TQGNKTLEALFFNFDYEP-------ELGESIDLIASVSKNNFRGLITPQLTIKEI 521 >gi|33240434|ref|NP_875376.1| single-stranded DNA-specific exonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237961|gb|AAQ00029.1| Single-stranded DNA-specific exonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 626 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 144/556 (25%), Positives = 270/556 (48%), Gaps = 30/556 (5%) Query: 42 IVARVLVNRNV-SIDYAKDFLNPS--IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 I+ +L R S ++F+ PS L P + + A+ R++ AI N E+I I Sbjct: 25 IIKEILYRRGFQSKSDIQNFIEPSKPPNALFHFPFL----NIASERVISAIKNHEEIAIC 80 Query: 99 GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 GDYD DG S AL++ L+ + IP R DGYG N ++++K + L+ITVD Sbjct: 81 GDYDADGMTSTALLIDVLTKLNAKPIPLIPSRQDDGYGLNKAIIDKIVALNINLLITVDN 140 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G ++ + L+YA + GIDVIV DHH++ + A+AL++P + S + GV +++ Sbjct: 141 GVSAIEELKYAKSLGIDVIVTDHHKINHQLNDAFALIHPETTPEKSPYRSIAGVGVTYIL 200 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278 I + L ++ + L+ DL+ + T+ D+ L G NR ++ + + + G Sbjct: 201 AEDIAKKLNKEEILNLSK------DLLCIGTIADMSKLEGANRYWLKHWIYKLKDSTSLG 254 Query: 279 LKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 L+A+ + + I ++ + I P IN+ GRI + L LLI D +++ +A + + Sbjct: 255 LQAIYKNSKLNNLQIKTNDISFKIAPRINSIGRIDDPKLILDLLIEKDQSKVDHMANRCE 314 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 +N+ R+ + + ++A + + D Q S I++ W+ G++G++A+R+ K+ RP Sbjct: 315 EINRLRKKLCLIVEKEALNIL--EKKDAQIDSFILLAQGHWNHGVIGIVASRIMNKYLRP 372 Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + +S E +G S RS + F + + + +L K GGHA AAG TV+ N L Sbjct: 373 TAILSSEGEGLLRASVRSPKNFHVTEALGKC--SDLLEKYGGHAAAAGFTVKASNLMALE 430 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 A + + ++ S +N L+ L+ P+G GN P+F + + Sbjct: 431 KKLNSIAETWLSQNEVAK-ISPEARIDFSQINDELLGDLKKLEPFGIGNQKPLFWTNSCE 489 Query: 518 LQSIRV--VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 + R+ L+++ ++ D + AI + + + K +++ ++ ++ Sbjct: 490 VTKYRIGYFGE--LRISLKNAD-ISFDAIKWEFSKKDI------NLPKTINIAFNIDIST 540 Query: 576 WRGSKRCQLRVLDASP 591 + L ++D P Sbjct: 541 KQDKDIVCLNIVDFVP 556 >gi|260101064|gb|ACX31683.1| single-stranded-DNA-specific exonuclease [Deinococcus radiodurans] Length = 705 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 159/575 (27%), Positives = 256/575 (44%), Gaps = 48/575 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W+ LA ++ + VA+VL R++ + L L P+P + Sbjct: 7 WLLAPPASRDAL-LATMREWQVSPPVAQVLCGRDLRTELLALPL-----ELTPNPAL--- 57 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +AAR IV A+ ++I I GDYD DG ++ A ++ L N + +IP R+ +GYG Sbjct: 58 -REAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANVHGFIPHRLNEGYGI 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 +P + + A L++TVDCG ++ D ++ G +V+V DHH + Sbjct: 117 HPDRVPEHAA-AADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECLVVHPH 175 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D + +L AGV + +L +Y L + + +LL L L TV DV PL+ Sbjct: 176 LTPDYDPDRHNLTGAGVAYHLLWAVYEELGR-------PEPRALLPLATLGTVADVAPLL 228 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G NRA V GL R PGL+AL+ + TA ++ +++ P INA GR+GE++ Sbjct: 229 GENRALVRAGLAEMARTELPGLRALMNEKRVRQ-PTARDVAFILAPRINAAGRMGEADRA 287 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 LL + E + LA L++ NQ RR ++ M QA +V+ D Sbjct: 288 LELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLA------DPNDPALVLTHDD 341 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 WH G++G++A++L E F RP + ++ G GS RS G I + +L + Sbjct: 342 WHAGVMGIVASKLVETFNRPVYIVAQ-----GKGSVRSTPG--ISAVQGLRESRDLLGRF 394 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGH AAG +++ NFG L + + P ++D L +A+ L+ L Sbjct: 395 GGHPGAAGFSLDPQNFGALRERIHGYVRQFPTP---VPAVRLDAPLPVAALTPELLSELS 451 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 P+G GNP P++ L R+V + F ++ + + GE Sbjct: 452 ILEPFGEGNPRPLWHLRG-PLTDTRLVGKQGDVLQFRFGG---VKGMKYSERDDAAGER- 506 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 V L +N W+G +L P+ Sbjct: 507 --------DVAAELALNEWKGRTSLELHAAALRPL 533 >gi|294783782|ref|ZP_06749106.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 1_1_41FAA] gi|294480660|gb|EFG28437.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 1_1_41FAA] Length = 554 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 141/556 (25%), Positives = 254/556 (45%), Gaps = 19/556 (3%) Query: 41 DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 +++ +L R + F+NP + +P + +K RI+ A N EKI I+G Sbjct: 9 ELIKDLLEKRGQESQHQIEKFMNPEYKDF-KNPFDFENMEKIVNRIILARENKEKIFIYG 67 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYDVDG + A + RF + ++ N YIP R YG + ++ F +L+ITVD G Sbjct: 68 DYDVDGISGTAFLTRFFNEIGIDTNYYIPSRNETDYGVSKKSIDYFHKRQGKLVITVDTG 127 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + ++YA + G++VIV DHH+ E+ L +L +L AGV F + Sbjct: 128 YNTIEDVRYAKSLGMEVIVTDHHKTVKEKFDDEILYLNPKLSKSYKFQYLSGAGVAFKLA 187 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + L D + LD+V + T+ DVVP+I NR + KGL + + GL Sbjct: 188 QGLCMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKIIKNTKVKGL 242 Query: 280 KALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 L+ + +T ++ Y I P IN+ GR+G S +G+ + +D +L + ++ Sbjct: 243 SYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKEDEFDLYNIIEEMKE 302 Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 N+ RR +E + + A K+ + + SVI + +WHPG++G++++RL KF P Sbjct: 303 QNRQRRTLEKHIYDDAMRKIKNLKLPLDKLSVIFLSSSKWHPGVIGVVSSRLTIKFNVPV 362 Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 ++ + G S RS+ +I + + +L + GGH +AAG V + L + Sbjct: 363 ILVA-IDGNYGKASCRSVG--NISIFNLLSNVKHLLERYGGHDLAAGFVVHKEKLNELRE 419 Query: 459 FFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 +F + + D L+ + D +E GP+G+ NP+P+F + Sbjct: 420 YFIRTIPRLKEEDNKAKKDYGKSFDFELSVKDLGEKAFDFMEKMGPFGSNNPHPLFFDSD 479 Query: 516 HKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 KL +I+ + +D+ + A+ F + +++ K ++ + Sbjct: 480 LKLDNIKRFGVDFRHFNGIIYKDNVSYNAVGFELADEIQEDYI----NKTYNIVYYPEKI 535 Query: 575 YWRGSKRCQLRVLDAS 590 + Q+ + Sbjct: 536 ILNNEEVTQIILKSIK 551 >gi|237739234|ref|ZP_04569715.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 2_1_31] gi|229422842|gb|EEO37889.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 2_1_31] Length = 554 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 142/556 (25%), Positives = 254/556 (45%), Gaps = 19/556 (3%) Query: 41 DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 +++ +L R + F+NP + +P + +K RI+ A N EKI I+G Sbjct: 9 ELIKDLLEKRGQESQHQIEKFMNPEYKDF-KNPFDFENMEKIVNRIILARENKEKIFIYG 67 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYDVDG + A + RF + ++ N YIP R YG + ++ F +L+ITVD G Sbjct: 68 DYDVDGISGTAFLTRFFNEIGIDTNYYIPSRNETDYGVSKKSIDYFHKRQGKLVITVDTG 127 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + ++YA + G++VIV DHH+ E+ L +L +L AGV F + Sbjct: 128 YNTIEDVRYAKSLGMEVIVTDHHKTVKEKFDDEILYLNPKLSKSYKFQYLSGAGVAFKLA 187 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + L D + LD+V + T+ DVVP+I NR + KGL + + GL Sbjct: 188 QGLCMSLGLD-----MGIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKIIKNTKVKGL 242 Query: 280 KALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 L+ + +T ++ Y I P IN+ GR+G S +G+ + +D +L + ++ Sbjct: 243 SYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKEDEFDLYNIIEEMKE 302 Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 N+ RR +E + + A K+ + + SVI + +WHPG++G++++RL KF P Sbjct: 303 QNRQRRTLEKYIYDDAMRKIKNLKLPLDKLSVIFLSSSKWHPGVIGVVSSRLTIKFNVPV 362 Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 ++ + G S RS+ +I + + +L + GGH +AAG V + L + Sbjct: 363 ILVA-IDGDYGKASCRSVG--NISIFNLLSNVKHLLERYGGHDLAAGFVVHKEKLNELRE 419 Query: 459 FFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 +F + + D L+ + D +E GP+G+ NP+P+F N Sbjct: 420 YFIRTIPRLKEEDNKAKKDYEKSFDFELSVKDLGEKAFDFMEKMGPFGSSNPHPLFFDSN 479 Query: 516 HKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 KL +I+ + +D+ + A+ F + +++ K ++ + Sbjct: 480 LKLDNIKRFGVDFRHFNGIIYKDNVSYNAVGFELADEIKEDYI----NKTYNIVYYPEKI 535 Query: 575 YWRGSKRCQLRVLDAS 590 + Q+ + Sbjct: 536 ILNNEEVTQIILKSIK 551 >gi|312144167|ref|YP_003995613.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp. 'sapolanicus'] gi|311904818|gb|ADQ15259.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp. 'sapolanicus'] Length = 767 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 147/551 (26%), Positives = 266/551 (48%), Gaps = 29/551 (5%) Query: 50 RNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108 R ++ + K FL + + +A I+ I N++ I+I+GDYDVDG +S Sbjct: 31 RGLNNKNELKKFLELDNYEEL-NLEAFPQIMEAVDFILSYIKNNKNILIYGDYDVDGISS 89 Query: 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168 A++M L S N +IPDR +GYG N +++ + +E L+I+ DCG ++Y+ +++ Sbjct: 90 TAILMGALQRLSDNIVYHIPDRFKEGYGLNKDVLKSY-SESIDLVISCDCGISNYEEVKF 148 Query: 169 ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228 A G+ +V DHH + + PA +++P L + L AG+ F ++ IY+ + + Sbjct: 149 AKKMGMAFVVTDHHDLPEKLPPADYILSPRLLAENHQGYWLPGAGMAFFLVKAIYKKIER 208 Query: 229 DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI 288 + LDL+ LA + DVVPLIG NR L ++ PGLKAL +NI Sbjct: 209 AGEEK------DFLDLLLLAIIADVVPLIGENRYLFKTALTKLQQSQRPGLKALYNELNI 262 Query: 289 SSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347 ++ I + LG+ I P +N+ GRI + +LL+++D + LA +L +NQ R+ + Sbjct: 263 NAHEINEKVLGFQIAPILNSAGRIDNAEKALKLLLAEDKTQAFSLAAQLKDINQQRKKIS 322 Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-ED 406 + +AE + D +Q +++ WH G++G+ A R+ E + P +++ + Sbjct: 323 QEIFLEAEKAI-----DSEQRKALILYNKSWHQGVIGIAAGRIAENYQIPVVLMTYNPDK 377 Query: 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 S RSIEG +I ++S +L K GGHA AAG ++++ + ++ + Sbjct: 378 DLITASARSIEGININNLISKC--SSLLEKHGGHAAAAGFSLKKDRLEKFRLRLKRLINQ 435 Query: 467 IVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-N 525 + +L V D + + +N L P+G NP PVF ++ + R + N Sbjct: 436 ELKSLEQNLVITTDLEVELAELNHEFYQKLRLFAPFGEANPEPVFYTE-VEILNSRELSN 494 Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 H +M + + A+ + + + + L N ++G++ +L Sbjct: 495 GRHKKMVVSD-GKDKITALWWWAKDIKIHQKQK--------LAFKLSENIYQGNRSLELE 545 Query: 586 VLDASPVEGHH 596 + SP++ Sbjct: 546 IKALSPLDKQK 556 >gi|149195378|ref|ZP_01872463.1| RecJ exonuclease [Caminibacter mediatlanticus TB-2] gi|149134469|gb|EDM22960.1| RecJ exonuclease [Caminibacter mediatlanticus TB-2] Length = 531 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 165/563 (29%), Positives = 259/563 (46%), Gaps = 61/563 (10%) Query: 52 VSIDYAKDFLNPSIRLL----MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAA 107 ++ + L+ I + +P +L+D KA RI++AI N EKI++ GDYDVDG + Sbjct: 2 LTKQKILEILSHRIEEINSLNIPHFSLLSDIKKATNRIIKAINNKEKIVVVGDYDVDGVS 61 Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 S A+M F N + IPDR +GYG P L+EK A LIITVD G TS++A++ Sbjct: 62 SSAIMKLFFEKIGYNIEVVIPDRFKEGYGLTPKLLEKI---DANLIITVDNGITSFEAVE 118 Query: 168 YATNQGIDVIVIDHHQV---------------------KSEEIPAYALVNPNRLDDLSGQ 206 + GIDVIV DHH +P + ++ Sbjct: 119 ICNDLGIDVIVTDHHTPLINEEWKMESGDFNSKFSTLNSKFILPNAYAIVNPKISPDFPF 178 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 +C A V + + I L DL LD++A+A + DV+PL +NR V Sbjct: 179 KEICGAEVAWYLCASIKNALNLK------IDLREFLDILAIAIIADVMPLTHMNRTLVNM 232 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 GL + P +A+ N I +E++ Y I P INA GR+ + + L S D Sbjct: 233 GLKKLNKATKPFSRAIKRFFNKE--INSEDIAYQIAPRINAAGRVANAKVAFEFLTSKDE 290 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +E L ++LD LN R+ +E +L+ E D + V V +H G++G++ Sbjct: 291 EEAFRLFLELDNLNNLRKEIEKEILDDIEI-------DEENNFV--VVSGDYHEGVIGII 341 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 A+R+ K+ +P+ S +++ GSGRS+ DI +V+ + IL GGH MA GL Sbjct: 342 ASRIVHKYKKPAIVFSKKDE-LLKGSGRSLGNIDIFSLVNEC--KDILEGFGGHKMACGL 398 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 ++ NF + + F + G L S ++ L+D+L+ PYG N Sbjct: 399 AIKEENFEKFKIKVNEKIKKYNEEDFFIEDF-VLGELPFSEIDFELLDILKKFEPYGEAN 457 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P P F + K++ I+ + H ++ SQ+ + L AI FR G E + Sbjct: 458 PKPKF-IASAKIEHIQNLKDNHYKLIL-SQNEKILPAIIFRFDGEFKDEITFK------- 508 Query: 567 VTGHLCVNYWRGSKRCQLRVLDA 589 + N + G + QL + + Sbjct: 509 --FSISENNYYGRE-IQLIIEEI 528 >gi|159903451|ref|YP_001550795.1| single-stranded DNA-specific exonuclease [Prochlorococcus marinus str. MIT 9211] gi|159888627|gb|ABX08841.1| Single-stranded DNA-specific exonuclease [Prochlorococcus marinus str. MIT 9211] Length = 625 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 146/573 (25%), Positives = 271/573 (47%), Gaps = 30/573 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP-LI 74 +W++ L IP I+ +L+ R ++ I+ D + P +PDP Sbjct: 7 KWITPLPVCFSESIPK-----EIPHIIKSILLRRGLTHINDINDLVEP---PDLPDPTDH 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D D A+ RI+ AI N+EKI I GDYD DG S +L++ FL + +IP R +G Sbjct: 59 FPDLDIASERIISAINNNEKIAICGDYDADGMTSTSLLVDFLLRLDGSPIPFIPSRKEEG 118 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG N +++EK EG +LIITVD G ++ ++ A + GIDVI+ DHH++K AL Sbjct: 119 YGLNRNIVEKIRREGIRLIITVDNGVSAIYEIELAQSYGIDVILSDHHEIKENLPNLLAL 178 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++P+ + S +L G+ +L+ I +K+ L+ DL + TV D+ Sbjct: 179 IHPSTIPYSSPYKYLAGVGLAYLIAQTIAIKRNSTDKLSLSK------DLFCIGTVADMA 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGE 313 L G NR ++ + GLK+L+ + + IT E++ + I P IN+ GRI E Sbjct: 233 KLKGANRYWLKSWTPNLINTKSKGLKSLLSKAKLNNKNITTEDIAFRIAPRINSVGRISE 292 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 +L +L + D + + K++ +N+ R+L+ + +A + + + + + IV+ Sbjct: 293 PSLILKLFLEKDHISIREIVNKIENINKERKLLCNQTTSEAISILESNSEVLN--PFIVL 350 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + WH G++G++AA++ E++ RP+ ++ +++G S RS + F+ + + I Sbjct: 351 AQNHWHQGVIGIVAAKIMERYNRPTAILASDKNGFLRASVRSPKSFNALAALKKCSQ--I 408 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L K GGH+ A G T++ L + A + + P + + + + + Sbjct: 409 LHKFGGHSAAGGFTIKAEKISLLQSKLNESASHWLSNNS-KPTIEPECYVEFDQITNQIC 467 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPL 553 + L+ P+G GNP P+F + H + + Q ++AI + Sbjct: 468 NYLKLLEPFGQGNPAPLFWTRGCTILKKETFYSGHQLLHLK-QGKSIVKAINWNSNKF-- 524 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 + + + ++ + + + Q+ + Sbjct: 525 -----TTYPSSIDIAFYIDYENYFNTDKHQITI 552 >gi|32491188|ref|NP_871442.1| hypothetical protein WGLp439 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166395|dbj|BAC24585.1| recJ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 580 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 146/550 (26%), Positives = 260/550 (47%), Gaps = 20/550 (3%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 + IP I+ ++ NR + ++ + L+ +L KA + A+ +K Sbjct: 19 ENSNIPIILKKIYSNRGIKQ---LKEIDLKTKNLISYKNLL-GIKKATDVLKIALIKRKK 74 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 I+I GD+DVDGA+ AL L IP+R +GYG ++E + ++I Sbjct: 75 IVIVGDFDVDGASGTALAFLILMKLGAKKVEFIIPNRFKNGYGLTKEIVEFIEKKEGEVI 134 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 +TVD G +S++ + A +G+ +I+ DHH A+A++NPN + L G Sbjct: 135 VTVDNGISSHEGVNLARKKGMKIIISDHHIPDKILPKAHAIINPNLKNCKFKSKSLSGVG 194 Query: 214 VVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 V+F +++ + L++++ N +L LDLVAL T+ D+ PL NR V +G+ Sbjct: 195 VIFYLMISLRSELKKNSWFKDNKIIIPNLAEFLDLVALGTISDLSPLDLNNRILVHQGMN 254 Query: 270 VARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R G+KALIE N+ S ++ ++ Y++ P IN GR+ + +G +LL+++D + Sbjct: 255 RIRNGNCRAGIKALIEISNLDISFLSTNDISYILSPKINVAGRLKDMRIGVKLLLTNDIK 314 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLL 386 + +LA +L+ LN+ R+++ M +QA Q S V+ WH GI+G++ Sbjct: 315 KARLLAKELNFLNKKRQIIGKKMEKQAFFICTKIQKKTNTTPSGFVLYHQDWHEGILGII 374 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAA 444 A+R+KE+F P + ++ GS RSIEG +I ++ + +++ GGH++AA Sbjct: 375 ASRIKERFQVPVIIFAKSKNNLLKGSIRSIEGINIRLILKELNNMYPDLIISFGGHSVAA 434 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 L +E F F N + + + DG L ++I +L + P+G Sbjct: 435 ALVIESSKLIYFKKIFLNFIENKKINVSSKRIISSDGELFYDDISIKTATLLLYSSPWGN 494 Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGK 563 P+F ++ ++N HL++ + L I F V + Sbjct: 495 KFNYPIFDGK-FRIFDQLLINKIHLKIKIQHILGGNILDGICFNVDLKSWP----NKKIN 549 Query: 564 RMHVTGHLCV 573 + + L V Sbjct: 550 FVKLAYTLRV 559 >gi|86605809|ref|YP_474572.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-3-3Ab] gi|86554351|gb|ABC99309.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-3-3Ab] Length = 742 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 168/610 (27%), Positives = 285/610 (46%), Gaps = 61/610 (10%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +RW L + +++++ A+VL R + S + A+ F++P+ P Sbjct: 3 YRWDLLPTPPQFD--PELSREYG--KYAAKVLALRGLHSREQARAFVDPNQYSPTPAGS- 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D ++A R++QA E + I+GD+D DG + +L++ L +P R +G Sbjct: 58 LPDLERAVARLLQARKRGETLCIWGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +G NP +++ +++G Q+++TVDCG + + A QG+DVIV DHH + PAYA+ Sbjct: 118 HGLNPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVIVTDHHALPDPLPPAYAV 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP RL + L GV + + +Y+ L + LDLVA+ V DV Sbjct: 178 VNPLRLPEEHPLRFLPGVGVAYKLAEALYQALGIPG-------VEEYLDLVAVGIVADVA 230 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIE---RVNISSPITAENLGYMIGPSINAGGRI 311 L R V +GL V PGL+AL++ S TA+++ + + P +NA GR Sbjct: 231 VLQRECRYLVQRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRW 290 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 +++L LL + D Q + L LN+ R + +L++A +V + D+ + I Sbjct: 291 DDASLAVELLTTSDPQRAQTLVEHFVALNEECRQLTQQVLQEASQQV--ESLDLARERAI 348 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVE 430 V+ G W+PG++G+ AARL E++G P+ I+ +E G+G GSGRSI G ++ + + Sbjct: 349 VLAGSGWNPGVLGIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLVEAIEAVRP 408 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN------ 484 +L+ GGGH MAAG+ V+ + ++ V ++ V++ Sbjct: 409 --LLLGGGGHPMAAGIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLAS 466 Query: 485 -----ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV---NLAHLQMTFESQ 536 + ++ + L+ P+G GNPNPV A N + S+R+ N HL+ S Sbjct: 467 QGRDRVAELD-EVYRQLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGS- 524 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY-WRGSK--------------- 580 +A+ F G L + + + + L W+G Sbjct: 525 -----RALWFWEAGEELERW---QACQALDIALQLEAEQPWQGKVLAVRPSGDWQAPTVS 576 Query: 581 RCQLRVLDAS 590 LR+ D Sbjct: 577 APSLRIQDYR 586 >gi|86608584|ref|YP_477346.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557126|gb|ABD02083.1| single-stranded-DNA-specific exonuclease RecJ [Synechococcus sp. JA-2-3B'a(2-13)] Length = 758 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 162/604 (26%), Positives = 279/604 (46%), Gaps = 47/604 (7%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 +RW L N +++++ A+V+ R + + + A+ F++P P P Sbjct: 3 YRWELLPTPPQFN--PQLSREYG--KYAAKVMALRGLHTWEQAQAFVDPEHYSPTP-PAS 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D ++A R++QA E + I+GD+D DG S +L++ L IP R +G Sbjct: 58 LPDLERAVARLLQAREREETLCIWGDFDCDGVTSTSLLLSALQPLGFRVQFSIPLRSTEG 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +G NP +++ + +G Q+I+TVDCG + + A QG+DVIV DHH + AYA+ Sbjct: 118 HGLNPQRLQQVLAQGCQVILTVDCGVGNAAEIAMAQAQGVDVIVTDHHMLPDPLPAAYAV 177 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP RL L GV + + +Y+ L + LDLVA+ V DV Sbjct: 178 VNPLRLPAEHPLRFLPGVGVAYKLAEALYQALGIPG-------VEQHLDLVAVGIVADVA 230 Query: 255 PLIGLNRAYVVKGLMVAR----RQGNPGLKAL---IERVNISSPITAENLGYMIGPSINA 307 L R V +GL V PGL+AL ++ TA+++ + I P +N Sbjct: 231 VLQRECRYLVQRGLPVLASTQPSTQRPGLQALLARVDNGQSQGVPTAQDIAFRIAPKLNV 290 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ +++L LL + D + + L + L++ RR + ++++A +V + D+ + Sbjct: 291 IGRLEDASLAVELLTTSDPERAQALVQRFVALDEERRQLTQQVIQEASQQV--ESLDLTR 348 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVS 426 IV+ W+PG++G+ AA L E++ P+ I+ +E G+G GSGRS+ G ++ + + Sbjct: 349 EGAIVLAEAGWNPGVLGIAAAHLVEQYNCPTVLIAKDEAAGRGYGSGRSLPGVNLVEAIE 408 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN-- 484 +L +GGGH MAA + V+ + Q+ V ++ +L+ Sbjct: 409 AVRP--LLRRGGGHPMAARIQVDLACLAAVQLALQRELAARVSPDQQARALAVEIILDWE 466 Query: 485 ---------ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV---NLAHLQMT 532 + ++ + L+ P+G GNPNPV A N + S + N HL+ Sbjct: 467 LLVSQDRDGVAELD-EVYRQLQLLQPFGHGNPNPVVALMNFRPNSSNLGVSRNGRHLKFE 525 Query: 533 FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + F G L + + + + + L + RG + Q +VL P Sbjct: 526 LQGSPGSR--TLWFWQAGEELERW---QKCQALDIALQLEADD-RGKQPWQGKVLAVRPS 579 Query: 593 -EGH 595 E Sbjct: 580 GEWQ 583 >gi|159029841|emb|CAO90895.1| recJ [Microcystis aeruginosa PCC 7806] Length = 760 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 150/591 (25%), Positives = 267/591 (45%), Gaps = 39/591 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPD----IVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 W L I Q + P+ +VA++L +R V + FL+ Sbjct: 3 NWQIPPSVTLPQEFLKIVQDY-TPESDGSVVAQILWHRGVWDRATLRTFLDEKAYQS-KT 60 Query: 72 PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127 P + + A +R+ +A+ EK+ I+GD+D DG + +++ L + YI Sbjct: 61 PFDFGQEMNFAVKRLEKALNKGEKVTIWGDFDADGVTATSVLWEGLGQFFPPYQQLDYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDR + +G N +EK ++G +LI+T D GST+ + YA GID+I+ DHH + E Sbjct: 121 PDRQKESHGLNCPGIEKLAHQGTRLIVTCDTGSTNIAEIDYANGLGIDIIITDHHTLPDE 180 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 AL+NP + HL V + ++ +Y L + P L +LLDLVA+ Sbjct: 181 RPEVIALINPRYFVETHPFYHLSGVAVAYKLVEAMYLTLADIPRKP----LENLLDLVAI 236 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 + D+V L G R KG+ + G+K L++ N + ++ + IGP INA Sbjct: 237 GLIADLVKLTGECRYLAQKGMQKLQNTQRLGVKKLLDLCNKTGD-RPMDISFGIGPRINA 295 Query: 308 GGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 R G++ LL S+D + LA + ++ N R+ ++ +++Q + K+ + D+ Sbjct: 296 VSRIYGDARFCVELLTSEDEKRCHELAEQAELANIRRQEIQRDIIKQVQKKL--ERIDLS 353 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +VI+++ +W GI+GL+A ++ +++ RP+ +S E GS RSI D+ ++VS Sbjct: 354 TTNVIILDDPQWPAGILGLVAGQIAQEYQRPTILLSTSEPPFAQGSARSIREIDLYQLVS 413 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNA 485 + +L + GGH +AAGL++ N + + + + ++D V+ Sbjct: 414 S--QSHLLHRFGGHPLAAGLSLTIENLPLFIEGINQQLRRTGIDLTSLSSQIEVDAVVTV 471 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-----SIRVVNLAHL---QMTFESQD 537 S + +L L+ P G GNP P N Q ++ + + + TFE D Sbjct: 472 SQLGKSLFRELKLLEPCGMGNPTPKLLIQNCYFQNLWHNNLEDLKGKKIAYPRTTFEIWD 531 Query: 538 S---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 S + + + + + + R L N + +L Sbjct: 532 SSIEQGFPGMWWGHHKDEI------AVDTRYDAVVELDFNTSKNRYEVRLI 576 >gi|154148993|ref|YP_001405746.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter hominis ATCC BAA-381] gi|153805002|gb|ABS52009.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter hominis ATCC BAA-381] Length = 524 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 152/524 (29%), Positives = 256/524 (48%), Gaps = 29/524 (5%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +P P L D KAA RI +AI N+EKI I GDYDVDG S +M FLS N + IP Sbjct: 26 IPLPSDLKDTYKAANRIKEAINNNEKIAIIGDYDVDGVVSSVIMNDFLSELGANFIVKIP 85 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R DGYG NP ++ + +G LIITVD G ++ DA + + ID+I+ DHH Sbjct: 86 NRFTDGYGLNPQMLNEL--DGINLIITVDNGISANDAAEICYKKRIDLIITDHHMPPPTL 143 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 AYA++NP + D +C A V + ++ + +N+D+ LLDL+ +A Sbjct: 144 PKAYAIINPKQNDCTFPNVEICGAQVAWYLIGAL------KEICNVNYDMSELLDLLIIA 197 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + D++ L LNRA + G+ KA+ E +++ Y I P IN+ Sbjct: 198 IIADMMELRDLNRALLKFGIKKLNNSKRACFKAIRE-HYFKKKFEFDDISYTIAPLINST 256 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 GR+ +++L + L S + +E ++ +N++R+ E + +Q+ V + Sbjct: 257 GRMDDASLSYKFLCSKNIKEANYYLDQITKINRSRKEEEHILYKQSLQNV------DEND 310 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSF 427 ++V G+ WH G++G++A+RL + + +P+ S + + + GS RSI FDI +++ Sbjct: 311 HILVTWGENWHEGVIGIVASRLTKNYKKPAIVFSIDKDANRAKGSARSIGKFDILELI-- 368 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 A ++ +L GGH AAGL + N N V T +I G LN S Sbjct: 369 ASQKELLEGFGGHKGAAGLVINPQNLSEFKRKINNACFN-VNHGNFTFSDEILGELNLSE 427 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545 ++ ++ +LE PYG NP P+F N +++I+++ H ++ E +++ + + Sbjct: 428 LDNEMLKILEFYEPYGQKNPRPLFKLENAIVKNIKIIGKEKNHAKIAIE-KNNAIREGLF 486 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 F + G + N +RG +L + + Sbjct: 487 FNFN-------FLPQVGDSFSFIASIGKNSFRGEISPELIIKEI 523 >gi|262066531|ref|ZP_06026143.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium periodonticum ATCC 33693] gi|291379765|gb|EFE87283.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium periodonticum ATCC 33693] Length = 554 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 141/556 (25%), Positives = 255/556 (45%), Gaps = 19/556 (3%) Query: 41 DIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 +++ +L R + F+NP + +P + +K RI+ A N EKI I+G Sbjct: 9 ELIKDLLEKRGNESQHQIEKFMNPEYKDFR-NPFDFENMEKIVNRIISARENKEKIFIYG 67 Query: 100 DYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 DYDVDG + A + RF + ++ N YIP R YG + ++ F +L+ITVD G Sbjct: 68 DYDVDGISGTAFLTRFFNEIGIDTNYYIPSRNETDYGVSKKSIDYFHKRQGKLVITVDTG 127 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 + + ++YA + GI+VIV DHH+ E+ L +L +L AGV F + Sbjct: 128 YNTIEDVRYAKSLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSGAGVAFKLA 187 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + L D + LD+V + T+ DVVP+I NR + KGL + + GL Sbjct: 188 QGLCMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKIIKNTKVKGL 242 Query: 280 KALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 L+ + +T ++ Y I P IN+ GR+G S +G+ + +D +L + ++ Sbjct: 243 SYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKEDEFDLYNIIEEMKE 302 Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 N+ RR +E + + A K+ + + SVI + +WHPG++G++++RL KF P Sbjct: 303 QNRQRRTLEKYIYDDAMRKIKNLKLPLDKLSVIFLSSAKWHPGVIGVVSSRLTIKFNVPV 362 Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 ++ + G S RS+ +I + + +L + GGH +AAG V + L + Sbjct: 363 ILVA-IDGDYGKASCRSVG--NISIFNLLSNVKNLLERYGGHDLAAGFVVHKEKLNELRE 419 Query: 459 FFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 +F + + + D L+ + D +E GP+G+ NP+P+F + Sbjct: 420 YFIRTIPKLKLEDNRSKKDYEKSFDFELSVKDLGEKTFDFMEKMGPFGSNNPHPLFFDSD 479 Query: 516 HKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 K ++I+ + +D+ + A+ F + +++ K ++ + Sbjct: 480 LKFENIKRFGVDFRHFNGIIYKDNVSYNAVGFELADEIKEDYI----NKIYNIVYYPEKI 535 Query: 575 YWRGSKRCQLRVLDAS 590 + Q+ + Sbjct: 536 ILNNEEVTQIILKSIK 551 >gi|317499047|ref|ZP_07957328.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 5_1_63FAA] gi|316893697|gb|EFV15898.1| single-stranded-DNA-specific exonuclease RecJ [Lachnospiraceae bacterium 5_1_63FAA] Length = 498 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 137/502 (27%), Positives = 236/502 (47%), Gaps = 28/502 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W + N+ I +K I ++AR++ NR+V + + +L + + DP ++ Sbjct: 4 QWYLYKKKADFNQ---IGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDI-SDPFLM 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + Q + + I I DYDVDG S ++ + + + IPDR+ DGY Sbjct: 60 KGVKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLGGKIDFQIPDRMKDGY 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK---------- 185 G N +++EK + + I+T D G + DA+ Y G+ +I+ DHH V Sbjct: 120 GINENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRK 179 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 PA ++NP + LC AGV F + Y+ + +D L LL ++ Sbjct: 180 EVLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEEDES-----QLEELLSML 234 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPS 304 A+ATVCDVV L G NR +V +GL + N GLKAL+ + + I + LG+++GP Sbjct: 235 AIATVCDVVDLTGENRIFVKEGLRRIKDTQNIGLKALLNVHDLMDKQIQSYALGFIVGPC 294 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ + L + +D ++ + A +L LN R+ M +++A + + Sbjct: 295 INASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE--YE 352 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + V+V+ H I G++A R+K++ P+F ++ ++G GSGRSIEG+ + Sbjct: 353 AKGDKVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEGI-KGSGRSIEGYSM--F 409 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + K GGH MAAG ++++ + + +ID + Sbjct: 410 EEMMKVKEVFTKFGGHPMAAGCSLKKEKLQEFRKKINENC--TLEKKDFAKKVQIDIDMP 467 Query: 485 ASAVNIALIDMLESAGPYGAGN 506 + + LI L P+G N Sbjct: 468 VDYITMDLIHQLSVLEPFGKEN 489 >gi|258512064|ref|YP_003185498.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478790|gb|ACV59109.1| single-stranded-DNA-specific exonuclease RecJ [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 669 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 158/564 (28%), Positives = 253/564 (44%), Gaps = 22/564 (3%) Query: 30 ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 A + +P VAR+L R D + L + DP+ TD A RI+QA Sbjct: 15 ARRLASVFEMPMRVARLLAARGYKDPDEVRRLL--TADEPWSDPMDFTDMRAACERILQA 72 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + E I + GDYDVDG ++ ++ + + +IP+R+ DGYG + L+E NE Sbjct: 73 VRRREIIAVMGDYDVDGVSAAVIVTKAIQALGGRVTCHIPERVSDGYGFSLRLLEDAKNE 132 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV-NPNRLDDLSGQG 207 GA LI+TVD G + +A+ A G+ V+V DHH+ E +P V + R D Sbjct: 133 GAALIVTVDNGIRAVEAISAALADGLSVVVTDHHEPGDEIVPDGVPVLHFTRHRDPISAK 192 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 C A V + + + + L + L L AL T+ D++PL+G NR V +G Sbjct: 193 RGCGAFVAWKLAIQL---LDAAGVPKADALRRWLTGLAALGTLADMMPLVGENRRLVREG 249 Query: 268 LMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 + V +G+ G + L + + + A ++ + + P +NA GR+ ++L RLL+ +D Sbjct: 250 IRVLATEGSAGWRVLCDCARVSRDTLGASDVSWRLVPRLNAAGRMAHADLAYRLLMEEDE 309 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +E + LA +L+VLN RR A +A V + +V W G+VGL+ Sbjct: 310 EEAKRLAEELEVLNAKRRQAVDAAFAEAVEAVEREHG---PNPAAIVVAGAWPLGVVGLI 366 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 A RL + + P+ A++ DG GSGR+ EG + ++S E L GGH A G Sbjct: 367 AGRLAQTYACPAIALADMGDGTLRGSGRAPEGASMLDLLSRCAEF--LHHYGGHEAAVGC 424 Query: 447 TVERVNFGRLCDFFQKFAHNIVP--ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 ++ + A P + P+ D L S L+ LE P+G Sbjct: 425 GLDASQLPAFRAALLEAAVAARPTGTAVDPPMAIADDYLMLSESADELLLWLERLAPFGP 484 Query: 505 GNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 + F ++ + HL++T D+ +A+ FR + + + Sbjct: 485 EHEPFRFFVGPVEIVRCARMGGGEHLRLTLAEGDAHQ-EAVWFRA-----PDRIARDTTG 538 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587 L N WRG+ R QLR+ Sbjct: 539 LWAFIVELVPNAWRGTVRPQLRIE 562 >gi|229047950|ref|ZP_04193526.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH676] gi|228723407|gb|EEL74776.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH676] Length = 558 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 142/524 (27%), Positives = 223/524 (42%), Gaps = 24/524 (4%) Query: 17 RWVSLLGQ----EGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPD 71 RW+ R + + + + + L N+ FL PSI L D Sbjct: 8 RWIQQDKNLEEHPNKARIMYFARSFNLHPSLIQYLFFHNIKNWQDIYQFLYPSINNLY-D 66 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + D KA RI+ AI N E I IFGDYD DG S L+ + L N + +P R Sbjct: 67 PFLFNDMKKAVTRILNAIANKENIFIFGDYDCDGITSTTLLFQCLQKLGANVDFKLPLR- 125 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG P+ + K ++ LIITVD GS+++DA++ A GIDVIV DHH++ + Sbjct: 126 EEGYGLTPTAVHKIADKNISLIITVDNGSSAHDAMKIAKQYGIDVIVTDHHEITEKHPDC 185 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA +NP R D L GV F + ++ + N ++L AL T+ Sbjct: 186 YAFINPKRTDSTYPFSDLAGVGVAFKLAHALH----ITTQTNWNQSYSKYIELAALGTIA 241 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 D++PL NR GL + K ++ + + IT+ +GY I P NA GRI Sbjct: 242 DLMPLSDENRIICHLGLRKINTNPSYAFKLILNTMKRNQ-ITSSTIGYQIAPLFNALGRI 300 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + NL +L E L LN+ R+ M + + + + ++ + VI Sbjct: 301 ADPNLAVHVLTDTHINE--KSISTLFQLNEKRKQMTVSQFSECQRIICSK--KLHDNHVI 356 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV G+ +H G++G+LA+++ E + +P+ IS G S RS+ G + + + + Sbjct: 357 VVHGE-FHHGLIGILASKITEIYQKPAIVISNTGTG----SCRSVNGTNFSIINTLSRCS 411 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 L K GGH AAG ++E P + Sbjct: 412 EHLSKYGGHQAAAGFSIEMKEEVLDKFHQNIQVSATF-EEPIMPTKLYFNKHCPNEFVQY 470 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTF 533 L + P+G P+F P +++ HL++ Sbjct: 471 LYPEIFLLEPFGQRFEQPIFLSPPLQIEKFETFGANKNHLRLYL 514 >gi|166363550|ref|YP_001655823.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa NIES-843] gi|166085923|dbj|BAG00631.1| single-strand-DNA-specific exonuclease [Microcystis aeruginosa NIES-843] Length = 760 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 149/591 (25%), Positives = 265/591 (44%), Gaps = 39/591 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPD----IVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 W L I Q + P+ +VA++L +R V + FL+ Sbjct: 3 NWQIPPSVSLPQEFLKIVQDY-TPESDGSVVAQILWHRGVRDMATLGTFLDEKAYQS-KT 60 Query: 72 PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127 P + + A +R+ +A+ EK+ I+GD+D DG + ++ L + YI Sbjct: 61 PFDFGQEMNFAVKRLEKALNKGEKVTIWGDFDADGVTATTVLWEGLGQFFPADQQLDYYI 120 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 PDR + +G N +EK ++G LI+T D GST+ + YA + GID+I+ DHH + E Sbjct: 121 PDRQKESHGLNCPGIEKLAHQGTSLIVTCDTGSTNIAEIDYANSLGIDIIITDHHTLPDE 180 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 AL+NP + HL V + ++ +Y L + P L +LLDLVA+ Sbjct: 181 RPEVIALINPRYFVETHPFYHLSGVAVAYKLVEAMYLTLADIPRKP----LENLLDLVAI 236 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 + D+V L G R KGL + G+K L++ N + ++ + IGP INA Sbjct: 237 GLIADLVKLTGECRYLAQKGLKKLQNTQRLGVKKLLDLCNKTGD-RPMDISFGIGPRINA 295 Query: 308 GGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 R G++ LL S+D + LA + ++ N R+ ++ +++Q + K+ + D+ Sbjct: 296 VSRIYGDARFCVELLTSEDEKRCHELAEQAELANIRRQEIQRDIIKQVQKKL--ERIDLS 353 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 +VI+++ +W GI+GL+A ++ +++ RP+ +S E GS RSI D+ ++VS Sbjct: 354 TTNVIILDDPQWMAGILGLVAGQIAQEYQRPTILLSTSEPPFAKGSARSIREIDLYQLVS 413 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNA 485 + +L + GGH +AAGL++ N + + + + ++ V+ Sbjct: 414 S--QSHLLHRFGGHPLAAGLSLALENLPLFIEGINQQLRRTGIDLTSLSSEIEVAAVVTV 471 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL-----QSIRVVNLAHL---QMTFESQD 537 S + +L L+ P G GNP P N +++ + + TFE D Sbjct: 472 SQLGKSLFRELKLLEPCGMGNPTPKLLIQNCYFHNLWHKNLEDFKGRKIAYPRTTFEIWD 531 Query: 538 S---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 S + + + + + + R L N ++ +L Sbjct: 532 SSIEQGFPGMWWGHHKDEI------AADTRYDAVVELDFNTYKNRYEVRLI 576 >gi|319937502|ref|ZP_08011907.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp. 29_1] gi|319807342|gb|EFW03951.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp. 29_1] Length = 540 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 132/570 (23%), Positives = 253/570 (44%), Gaps = 43/570 (7%) Query: 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 + I ++ + ++A+V+ + + L+P + + D + + D RI Sbjct: 7 EPKKYQDIQNQYQVNSLLAKVIDIHEYDQETLQTLLSPRL--IYHDFSLFEEADMTLERI 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 +AI N EKI I+GDYD DG + ++++ + V +IP+R DGYG N + +++ Sbjct: 65 HEAIENEEKICIYGDYDCDGILATTILVQAFAELGVQVGYHIPNRFDDGYGLNAARVKQM 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 G LIITVD G ++DA++ A G+DVI+ DHHQ ++ A + ++ + Sbjct: 125 AQRGYSLIITVDNGVKAFDAVECANELGVDVIITDHHQFDNDLPDAMSFIHTKLSPE-YP 183 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + V + + + + L L A+ T+ D++PL+ NR+ V Sbjct: 184 FKEISGGFVAYKLASALLEKQDK-----------YLYCLAAITTISDMMPLLDENRSLVK 232 Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLI 322 K L + + P L+ L + T +G+ I P IN+ GR+ E N+ + + Sbjct: 233 KALTFMKSEKYPSLELL---LGDQQSYTTTTIGFTIAPKINSFGRLPELCNPNILVKYFL 289 Query: 323 SDDSQELEML-AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 D ++L M A +N R+ + + A K+ + + + H G Sbjct: 290 KDAPRDLMMKVAQMATQINSKRQALTNEQYTLASEKMNDE--------FLYWASEDVHEG 341 Query: 382 IVGLLAARLKEKFGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 +VGL+A + ++ RPSF + +++ G GS RS++GF + + + V GGH Sbjct: 342 LVGLIAGKYTRQYERPSFVMHYDKQLGIYKGSARSVDGFSLHEFFTA--HSEQFVAFGGH 399 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 ++A G +++ +F ++ ++ T + ++ + ++I I+ L Sbjct: 400 SLAGGFSIDEDHFESFYHCIEENLKDVELHATTNALL-----IDENDLSIENIESLAMLE 454 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 P+G GN P++ + + + HL+M + ++ + A+ F+ F Sbjct: 455 PFGMGNEEPLYLLKDVPVMKFYQLSGGKHLKMDIDFPRTK-MTALYFQQGQL----FDEL 509 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 K + + G L VN +R K + D Sbjct: 510 KDKKYISIVGTLSVNEFRNQKSINFIIKDI 539 >gi|218440693|ref|YP_002379022.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7424] gi|218173421|gb|ACK72154.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7424] Length = 785 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 155/620 (25%), Positives = 281/620 (45%), Gaps = 52/620 (8%) Query: 7 LGVECSI-SGFRWVSLLGQEGINRALAITQKHAIP---DIVARVLVNRNVSID-YAKDFL 61 + E S + RW + E + L +++A A++L +R + FL Sbjct: 1 MNNEQSTMNDTRWQIITPSEIPSWFLETVKRYAPHSDGKYAAQLLWHRGIQDPLQLPGFL 60 Query: 62 NPSIRLLMPDPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC- 119 +P + P + A +R+ QA EKI I+GD+D DG + +++ L Sbjct: 61 DPDVYQ-PSSPFAFGQEMKWAIQRLQQAREKGEKITIWGDFDADGITATSVLWDGLGEFF 119 Query: 120 --SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 + + YIP+R + +G N S ++ NEG LII+ D GST+ + YA GID+I Sbjct: 120 PQYLQLDYYIPNRFTESHGLNCSGIDYLANEGTSLIISCDTGSTNLTEIDYAHQLGIDII 179 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFD 237 + DHH + + P A++NP + HL V + ++ +Y+ L + P Sbjct: 180 ITDHHTLPEDRPPVIAIINPRYFAESHPLYHLSGVAVAYKLIEALYQSLPDIPQNP---- 235 Query: 238 LLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPIT 293 + +LLDLVA+ + D+V L G R KG+ + ++Q PG+ L+E + Sbjct: 236 VENLLDLVAIGLIADLVQLSGDCRFLAQKGIQILQQQLKNPSRPGVARLLELCQRNGD-R 294 Query: 294 AENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352 ++ + +GP INA R G++ LL S D + E LA++ ++ N R+ ++ ++ Sbjct: 295 PTDISFGLGPRINAVSRIHGDAKFCVELLTSRDKKRCEKLALETELANTRRKSLQKDIMA 354 Query: 353 QAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--- 409 Q + K+ D+ SVIV+E +W G++GL+A ++ +++ RP+ ++ + Sbjct: 355 QVQKKLSQL--DLSTTSVIVLEDPQWQSGVLGLVAGQIAQEYSRPTILLTTGNEDDNANS 412 Query: 410 -----IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 GS RS+ D+ ++V A + +L + GGH +AAGL++ N + + Sbjct: 413 TLKLARGSARSVNSIDLYQLV--ASQSHLLHRFGGHPLAAGLSLAVENISLFREGINQQF 470 Query: 465 HNIVPALITT-PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ---- 519 L + D ++ + + AL L+ PYG GNP P N + Sbjct: 471 RQQHGDLALKGAGIEADLIVTVAELGKALFWELKLLEPYGMGNPIPKLLLQNCWFENTWH 530 Query: 520 -SIRVVNLA---HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 + + + +++ TF D +E + + Y L + R V L Sbjct: 531 NNPKDLRGKTIQYIKTTFSLWDDSVNEGFPGVWWGHYKDELPQ------NTRCDVIVELD 584 Query: 573 VNYWRGSKRCQLRVLDASPV 592 N ++ K+ ++R++ P Sbjct: 585 FNVYQ--KQYEVRLIAVRPS 602 >gi|3063673|gb|AAC14136.1| ssDNA-specific exonuclease [Chlamydophila caviae] Length = 519 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 134/497 (26%), Positives = 230/497 (46%), Gaps = 9/497 (1%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 KA R++ A +E +M++GD DVDG VAL++ FL + + ++ YG Sbjct: 1 MTKAIERLLLAKERNEHVMVYGDSDVDGMTGVALLVEFLRSIDMKVSYCFLGALLKHYGE 60 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 SL+ K E L+ITVDCG T+ + QGIDVI+ DHH + A +NP Sbjct: 61 PSSLIAKMKEEKVTLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGKIPHCIATLNP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D L GV F + + LR++N L D LLDLV L TV DV L+ Sbjct: 121 KLRDRAYPNKELTGVGVAFKLARGVLNALRKENP-KLKVDTKHLLDLVTLGTVTDVGTLL 179 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNL 316 G NR V G+ + GL L + +T+ ++ I P +N+ GR+ ++ Sbjct: 180 GENRTMVRHGIKEIAKGSRLGLHKLCIFAGVKPSEVTSTDIVLKISPKLNSLGRLADAAK 239 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 G LL++ D + + + LD +N+ R+ +E+ + K+L +I + + IV+ + Sbjct: 240 GVELLLTQDPETADEIIQYLDKINRERQKIEADVFHDV-QKILKNKPEIVKQAAIVLSSN 298 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WH ++ +++ARL + + +P IS + G G GS R+I F + ++ + + Sbjct: 299 DWHARVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQKC--SSLFIS 355 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH AAG+ + F ++ + +D + ++ L+ + Sbjct: 356 YGGHDFAAGIIINEDQVEAFRKKFIHLVNSSLKKDKAVLTLPLDAQADFDEIDHDLLSSI 415 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 + P+G GNP PVF H+++ +++ HL++ + L+ IAF + E Sbjct: 416 DLFEPFGKGNPMPVFYTIVHQVRYPKLLPGNHLKLYL-NHGERNLEGIAFGLGDRI--EA 472 Query: 557 LMQSRGKRMHVTGHLCV 573 L + K + + + Sbjct: 473 LKANWNKPLELAYTPRL 489 >gi|224542326|ref|ZP_03682865.1| hypothetical protein CATMIT_01505 [Catenibacterium mitsuokai DSM 15897] gi|224524775|gb|EEF93880.1| hypothetical protein CATMIT_01505 [Catenibacterium mitsuokai DSM 15897] Length = 537 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 134/561 (23%), Positives = 246/561 (43%), Gaps = 38/561 (6%) Query: 31 LAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 I QK+ + ++A+V+ ++ + + F++P + + D + + D+ RI +AI Sbjct: 12 EEIMQKYGVNSLMAKVIESKKLDQKQFEAFMDPHL--IYHDFSLFEESDETLERIEEAIE 69 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 N EKI I+GDYD DG + ++++ V +IP+R DGYG N + +E+ +G Sbjct: 70 NKEKICIYGDYDCDGILATTILVQAFHERGVEVGYHIPNRFTDGYGLNTTRVEQMAEKGY 129 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 LIITVD G ++DA++ A GIDVI+ DHH +E AY++++ +C Sbjct: 130 SLIITVDNGIKAFDAVEKAGELGIDVIITDHHTFDAEVPVAYSIIHTKMSP-RYPFKEIC 188 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 + + + + + L L A+ T+ D++PL+ NR+ V +GL Sbjct: 189 GGFIAYKLAAALLKH-----------HDPYLFTLAAITTLSDMMPLLDENRSLVKRGLQF 237 Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 ++ P L+ L S +G+ I P INA GR+ L + + + + Sbjct: 238 MKQYKYPALELL----KGSRDYDVTTIGFTIAPRINAFGRL--PELVNPVCLVKYFLKGT 291 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 A V N ++ + + + + + + H G+VGL+A + Sbjct: 292 NPAYLEKVSNYASKVNSKR--QSMTTSLYKEAVTDTTSPCLFYGSEDMHEGLVGLVAGKY 349 Query: 391 KEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449 ++ +P+F + ++ GS R I+GF+I E + V+ GGHAMA G T+ Sbjct: 350 AREYEQPAFVMHYDSKKEIYKGSARGIDGFNIYDFFK--HHEDLFVQYGGHAMAGGFTIT 407 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + N+ + D +++ I + I ++ L PYG N P Sbjct: 408 KSNYPLVYD---ALVNDLQGCHFEVSESVI--PITLDDTTIHNVETLSLLAPYGEENKAP 462 Query: 510 VFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 +F + + ++ HL+ + + A+AF ++ + M + Sbjct: 463 LFILEDVTCSRVDRLSEGKHLKFHLGDEQ---VSALAFNKGQ----KYEEVVHKESMTLV 515 Query: 569 GHLCVNYWRGSKRCQLRVLDA 589 G L +N +RG+K V + Sbjct: 516 GTLSINVFRGNKSINFIVEEI 536 >gi|313897422|ref|ZP_07830965.1| putative single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. HGF2] gi|312957792|gb|EFR39417.1| putative single-stranded-DNA-specific exonuclease RecJ [Clostridium sp. HGF2] Length = 535 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 142/564 (25%), Positives = 241/564 (42%), Gaps = 46/564 (8%) Query: 28 NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87 R+ I + H + + A+VL +R + + + L + + DP + A RI Q Sbjct: 9 ERSQQIQEMHHVSALCAKVLASRGLKDEQIAELLQ---KPQLADPFTANGMQEVATRIYQ 65 Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147 A N E++M+ GDYD DG S A+++ L + A YIP+R +GYG +E Sbjct: 66 AKQNKERVMVCGDYDADGICSTAILVDALRRYGIQAGFYIPNRFAEGYGLQKHTVELAHE 125 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 +G L+ITVD G + DAL A N+G+DVIV DHH + E P L++P + + Sbjct: 126 KGYSLLITVDNGVKALDALTEARNRGVDVIVTDHHAMDEEF-PCLYLLHPFLMGERFE-- 182 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 L AGV + + +++ + L +A + DV+PL RA V G Sbjct: 183 TLSGAGVALEISRALLGEVKEH------------VVLACVAAIADVMPLRQETRAIVQLG 230 Query: 268 LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES---NLGSRLLISD 324 L R+ ++ L T + + I P +N GR+ + N R L+S Sbjct: 231 LQYLRQGICQPIQLLANDRYPKWDETL--IAFQIVPKLNTTGRLADIANANNTVRYLLST 288 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384 + ++L+ +A ++ LN R+ M M++ A V + ++ D +H G+ G Sbjct: 289 NLEQLQHMAKQIRKLNDRRKTMSDDMVKVARTLVRPEY------RFQLLFHDSFHEGMAG 342 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444 L+A +L E+ P + E GS RS++ D+ L GGH AA Sbjct: 343 LVAGKLSEELQLPVMVAAQREQ-MFKGSIRSLDLLDLTTFFDACRP--SLSAYGGHKAAA 399 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGPYG 503 G+ N Q + + + + D + + +A ++ L GP+G Sbjct: 400 GIGFPYENK----QIVQDYVNTRMEGIHFQQEKSYDVIPIRVQEATLAEVESLSVLGPFG 455 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG 562 G P+F +Q R++ H + +L+A+ FR + Sbjct: 456 CGFEEPLFYLEEASVQGCRLLGNREHAKWILSD----SLEAMYFRCGNA----YERLHEK 507 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRV 586 ++ G+L +N + G K+ + V Sbjct: 508 NNVNFIGNLRINSFMGRKKVNIFV 531 >gi|328957579|ref|YP_004374965.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp. 17-4] gi|328673903|gb|AEB29949.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp. 17-4] Length = 699 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 243/501 (48%), Gaps = 27/501 (5%) Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 G S A++ + N YIP+R DGYGPN + E+ I +G QLI+T D G +D Sbjct: 17 GVTSTAVLKETIEMIGGEVNYYIPNRFTDGYGPNVAAFERLIEQGTQLIVTCDNGVAGHD 76 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 A++ A GIDVIV DHH++ S AYA+++P G L GV F + + Sbjct: 77 AIERAKALGIDVIVTDHHELPSTLPAAYAVIHPRHPKGSYPFGELSGVGVAFKLATALLG 136 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 + + LLDLVAL T+ D+V L NRA V++GL+V + GL AL + Sbjct: 137 EIP-----------VELLDLVALGTIADLVSLTDENRALVMQGLVVLQNTQRIGLSALFK 185 Query: 285 RVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 I I E +G++IGP +NA GR+G+++ LL + D LA + N R Sbjct: 186 LAKIKREEIDEETVGFIIGPRLNAVGRLGDASPAVELLTTFDDDVAASLAQLVQEKNIER 245 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS- 402 + S + +A + D + V V+ + WH G++G++A+++ K G+P+ ++ Sbjct: 246 QAYVSTITNEAFDMIEKSDVD---SDVYVLAKEDWHEGVLGIVASKIVGKTGKPALVMNI 302 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 G GSGRSI F + + E GGH MAAGLTV N R+ + Sbjct: 303 DPAKGLAKGSGRSIPAFHLYNALDNVREFTT--TFGGHHMAAGLTVPLENIDRIQSELNQ 360 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 +A + +IDG L+ + +++ L P+G N P F F N + Q +R Sbjct: 361 YAIENGASQELGEETQIDGQLSIKEATVEVVEELNRLAPFGTDNLKPTFLFKNVESQDVR 420 Query: 523 VVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 + HL+M ++D+ L I F+ P+ E + + V G L +N W GS+ Sbjct: 421 RIGGDQAHLKMKL-AEDNAFLDVIGFQFG--PVAEEIGLHSA--ISVVGKLAINEWNGSR 475 Query: 581 RCQLRVLDASPVEG-HHFAKK 600 + Q+ + D + +EG F + Sbjct: 476 KTQIMLEDLA-IEGVQVFDSR 495 >gi|16330150|ref|NP_440878.1| single-strand-DNA-specific exonuclease RecJ [Synechocystis sp. PCC 6803] gi|1652638|dbj|BAA17558.1| single-strand-DNA-specific exonuclease; RecJ [Synechocystis sp. PCC 6803] Length = 759 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 148/614 (24%), Positives = 270/614 (43%), Gaps = 52/614 (8%) Query: 16 FRWVSLLGQEGINRALAITQKH-AIP--DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPD 71 FRW + + ++H A++L R + S D FL+P Sbjct: 4 FRWQLIPPVTPPAIFVEQVRRHCGQSSGQFAAQLLWQRGIQSADQLGGFLSPDCYT-PTS 62 Query: 72 PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127 P + A +R+ QA+ EK+ I+GD+D DG S A++ L I Sbjct: 63 PWEFGQEMKWAVQRLGQAMAQKEKVTIWGDFDADGITSTAVLWEGLGQFFPQDSQLTYTI 122 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R+ + +G N +E+ +G +LI+T D GST+ D + YA G+DVIV DHH + + Sbjct: 123 PNRLRESHGLNRPGLERLATQGTKLIVTCDTGSTNLDEIVYAQQLGMDVIVTDHHTLPDD 182 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 A++NP D +L V F ++ +Y + P L LLDLVA+ Sbjct: 183 RPEVVAIINPRYFADGHPLFNLSGVAVAFKLVEALYNQYPTVPQQP----LEDLLDLVAI 238 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQG------NPGLKALIERVNISSPITAENLGYMI 301 + D+V L G R +G+ R Q PG+ AL+ N + ++G+ I Sbjct: 239 GLIADLVTLQGDCRYLAQRGIAQLRTQKDPATATRPGIHALLNLCNRNGD-RPTDIGFGI 297 Query: 302 GPSINAGGRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 GP INA RI G+++ G LL S D++ LA + + LN R+ ++ +++ + + ++ Sbjct: 298 GPRINAISRIKGDASFGVELLTSRDTKVCNQLAAEAETLNSRRKGLQKSVIIEIDQRL-- 355 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Q D+ V+V+ +W G++GL A+ + + GRP+ ++ ++ GS RS+ D Sbjct: 356 QNIDLSTTGVVVLTDPQWPTGVLGLAASHVAQTCGRPAILLNTQDGKIAKGSARSVANID 415 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA-HNIVPALITTPVFKI 479 + ++ + +++ GGH AAGL++ + + + + P+ + Sbjct: 416 LYALLHS--QRHLMLGFGGHPFAAGLSLPLDKLPLFTEAVNQQFWQSYGAQISLDPILAV 473 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ--SIRVVNLA------HLQM 531 D + + + L PYG GNP P N ++ S R + +L+ Sbjct: 474 DLQVKVADLGQDLFREFNLLEPYGMGNPAPKLLLENVQVGRPSFRNIKDRTGNKVSYLKT 533 Query: 532 TFE--------SQDSETLQ--AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 +F D + +Q + + + L + + + + L N + ++ Sbjct: 534 SFRVTDYPPKTDDDGQVVQCPGVWWGHHPDELPQ------NEPLDLVVELDFNTY--DRQ 585 Query: 582 CQLRVLDASPVEGH 595 ++R++D + Sbjct: 586 YEVRLIDFRLHQPQ 599 >gi|307153010|ref|YP_003888394.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7822] gi|306983238|gb|ADN15119.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7822] Length = 781 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 155/618 (25%), Positives = 278/618 (44%), Gaps = 57/618 (9%) Query: 17 RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMP 70 +W L E I + + + + A++L R ++ FL+P Sbjct: 6 QWQILTPVEIPRWFQEIVKGYTRNSDGL--MAAQLLWQRGITDPLQLPGFLDPDAYQ-PS 62 Query: 71 DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126 P + A +R+ QA+ + EK+ I+GD+D DG + +++ L + + Y Sbjct: 63 SPFAFGQEMKWAVQRLQQALSSGEKLTIWGDFDADGITATSVLWEGLGEFFPQYLQLDYY 122 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP+R + +G N S +++ +G +LIIT D GST+ ++YA GID+I+ DHH + Sbjct: 123 IPNRFSESHGLNCSGIDRLARQGTRLIITCDTGSTNLTEIEYANQLGIDIIISDHHTLPQ 182 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + P A++NP D HL V + ++ +Y+ L K PL L DLVA Sbjct: 183 DRPPVIAIINPRYFDSSHPLFHLSGVAVAYKLVEALYQTLPDLPKNPLLNLL----DLVA 238 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMIG 302 + + D+V L+G R +G+ ++Q PG+ L+E S ++ + +G Sbjct: 239 IGLIADLVQLVGDCRYLAQRGIQKLQQQLKNPTRPGIARLLELCQRSGD-RPTDISFGLG 297 Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 P INA R G++ LL S DSQ + LA++ ++ N R+ ++ + Q + K+ Sbjct: 298 PRINAVSRIQGDATFCVELLTSKDSQRCQKLALETELANTRRKALQKEITAQVQKKLSQL 357 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG----------KGIG 411 D+ VIV+E +W G++GL+A ++ ++ RP+ ++ ++ G Sbjct: 358 --DLSTTHVIVLEDPQWQSGVLGLVAGQIATEYNRPTILLTPGDEENADNAASLAKIARG 415 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S RS+ D+ ++V A + +L + GGH +AAGL++ N D + L Sbjct: 416 SARSVNHIDLYQLV--ASQSHLLHRFGGHPLAAGLSLPVENISLFRDGINQQLRQQHGDL 473 Query: 472 ITT-PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVV 524 PV + D V++ + + AL L+ PYG GNP P + ++ + Sbjct: 474 ALRGPVIEADLVVSVAELGKALFWELKLLEPYGMGNPIPKLLIQDCWFENAWHNNPKDLR 533 Query: 525 NLA--HLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 +++ TF+ +D+ + + Y L + L N + Sbjct: 534 GKKIQYIKTTFQLRDNSVNEGFPGVWWGHYKDELPQNTSS------DALVELDYNLY--E 585 Query: 580 KRCQLRVLDASPVEGHHF 597 KR ++R+L P H+ Sbjct: 586 KRYEVRLLAVRPHTPDHY 603 >gi|328676637|gb|AEB27507.1| Single-stranded-DNA-specific exonuclease recJ [Francisella cf. novicida Fx1] Length = 580 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 137/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 NKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV----EEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAIKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P+ + D L + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELEEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDCIKACYELQKEEFLGQVNLSLNIKTIE 579 >gi|256028613|ref|ZP_05442447.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D11] Length = 554 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L R S + + F+NP +P + + +I+ A N Sbjct: 1 MVKERSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 59 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + A+ YIP R YG + ++ F + + Sbjct: 60 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 119 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 120 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 179 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 180 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 234 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 235 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 294 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + SVI + +WHPG++G++++RL Sbjct: 295 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 354 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 355 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 411 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++F + D L + + +E GP+G+ NP Sbjct: 412 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 471 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D+ + A+ F + +++ K + Sbjct: 472 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 527 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 528 IVYYPEKIILNDEEVTQIILKSIK 551 >gi|289766531|ref|ZP_06525909.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D11] gi|289718086|gb|EFD82098.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. D11] Length = 557 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L R S + + F+NP +P + + +I+ A N Sbjct: 4 MVKERSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 62 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + A+ YIP R YG + ++ F + + Sbjct: 63 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 122 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 123 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 182 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 183 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 237 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 238 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 297 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + SVI + +WHPG++G++++RL Sbjct: 298 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 357 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 358 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 414 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++F + D L + + +E GP+G+ NP Sbjct: 415 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 474 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D+ + A+ F + +++ K + Sbjct: 475 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 530 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 531 IVYYPEKIILNDEEVTQIILKSIK 554 >gi|163791330|ref|ZP_02185743.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp. AT7] gi|159873409|gb|EDP67500.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp. AT7] Length = 699 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 238/501 (47%), Gaps = 27/501 (5%) Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 G S A++ + N YIP+R DGYGPN + E+ I +G QLI+T D G + + Sbjct: 17 GVTSTAVLKETIEMIGGEVNYYIPNRFTDGYGPNTAAFERLIEQGTQLILTCDNGVSGHT 76 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 A+ A + GIDVI+ DHH++ AYA+++P G L GV F + + Sbjct: 77 AIDRAKSLGIDVIITDHHELPDTLPDAYAVIHPRHPKGSYPFGELAGVGVAFKLATALLG 136 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 + LLDLVAL T+ D+V L NRA V +GL+V + GL AL + Sbjct: 137 EIPI-----------ELLDLVALGTIADLVLLTNENRALVKQGLLVLKNTQRMGLTALFK 185 Query: 285 RVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 I I E +G++I P +NA GR+G++ LL + D + LA + N R Sbjct: 186 SAKIKREEIDEETIGFIIAPRLNAVGRLGDAAPAVELLTTFDDETALALAQLVQEKNTER 245 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 + S + +A + + V V+ + WH G++G++A+++ K G+P+ ++ Sbjct: 246 QAYVSTITNEAFEMIEKLPTA---SDVYVLAKEGWHEGVLGIVASKIVGKTGKPTLVMTI 302 Query: 404 EE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 + G GSGRSI F + + + GGH MAAGLTV N + D Sbjct: 303 DNAKGLAKGSGRSIAAFHLYNALDSVRQLTT--TFGGHHMAAGLTVPIENIALIQDNLNH 360 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 +A + ++DG L + +++ L P+G N P+F F N + Q +R Sbjct: 361 YAAETGLSEELGEEIQVDGQLKIQEATVEVVEELNRLAPFGTDNLKPLFLFKNVESQDVR 420 Query: 523 VVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 + HL+M +D+ L I F +G+ E + S + V G L +N W GS+ Sbjct: 421 RIGGDQAHLKMKLV-EDNAFLDVIGF-QFGSVADEIGLYSD---VSVVGKLAINEWNGSR 475 Query: 581 RCQLRVLDASPVEG-HHFAKK 600 + QL + D + +EG F + Sbjct: 476 KTQLMLEDLA-IEGVQVFDSR 495 >gi|260495119|ref|ZP_05815248.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_33] gi|260197562|gb|EEW95080.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_33] Length = 556 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L R S + + F+NP +P + + +I+ A N Sbjct: 3 MVKEKSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 61 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + A+ YIP R YG + ++ F + + Sbjct: 62 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 121 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 122 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 181 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 182 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 237 KSTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + SVI + +WHPG++G++++RL Sbjct: 297 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 356 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 357 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++F + D L + + +E GP+G+ NP Sbjct: 414 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 473 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D+ + A+ F + +++ K + Sbjct: 474 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 529 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553 >gi|154173842|ref|YP_001409209.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter curvus 525.92] gi|112803465|gb|EAU00809.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter curvus 525.92] Length = 525 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 147/548 (26%), Positives = 258/548 (47%), Gaps = 35/548 (6%) Query: 52 VSIDYAKDFLNPSIRLLM-------PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 +S + ++ L + P P L D K A RI +A+ E I+I GDYDVD Sbjct: 2 LSKEDIRNLLELRFSNDIHKKLSQIPTPSALKDIFKGAMRIKEAMQKDELIVIVGDYDVD 61 Query: 105 GAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 G S ++ F V N + IP+R DGYG NP ++E+ ++E +LIITVD G ++ Sbjct: 62 GVVSSVILAEFFDDLGVGNYQVRIPNRFKDGYGLNPDIIEE-LDENVKLIITVDNGISAN 120 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 DA Q +GID+I+ DHH AYA++NP + +C A V + + + Sbjct: 121 DAAQICKARGIDLIITDHHMPPPVMPEAYAIINPKQPGCTFPNIEICGAEVAWYLAGALK 180 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + + +N +D+ L+L+A+A + D++ L +NR V GL +A+ Sbjct: 181 DVCKLNN-----YDMSKFLELLAIAIIADMMELRDMNRMLVRLGLNRLNSSKRAAFRAIK 235 Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 E +++ ++I P IN+ GR+ ++ L + + + N +R Sbjct: 236 EFYGKDK-FECDDISFLIAPLINSAGRMDDAMNSFDFLRAKTIDKAYDYLDMIIDFNNSR 294 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 + E A+ E + V +IV G++WH G++G++A+RL + F +P+ S Sbjct: 295 KEEERALFECSLKDVR------DDDEIIVTWGEQWHEGVIGIVASRLAKHFSKPAIVFS- 347 Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 + G+ GS RSI DI ++ A E +L GGH AAGL + N + + K Sbjct: 348 IDRGRAKGSARSIGKLDILALI--AKHEDLLNSYGGHKGAAGLVIAPENLQKFKEEINKS 405 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 ++ ++ G ++A ++ L+++LE PYG NP P+F +++ ++ Sbjct: 406 CF-LMDLHQFASSDELLGDISAKEIDFELLEILELYEPYGQKNPRPIFRIDGAVVKNEKL 464 Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 + HL++ + D +TL+A+ F G+ +++ + N +RG Sbjct: 465 IGRDQNHLKLILQKDD-KTLEALFFNFTRH-------VKVGESINIIFSISKNSFRGLVT 516 Query: 582 CQLRVLDA 589 QL + + Sbjct: 517 PQLLIREV 524 >gi|208778961|ref|ZP_03246307.1| single-stranded-DNA-specific exonuclease RecJ [Francisella novicida FTG] gi|208744761|gb|EDZ91059.1| single-stranded-DNA-specific exonuclease RecJ [Francisella novicida FTG] Length = 580 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 137/572 (23%), Positives = 247/572 (43%), Gaps = 31/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQALQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHCSV----NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIKPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NP + + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIVTDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 314 HKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV----EEGILVKGGGHAM 442 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAIKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+++ +F + F+ +I+ P+ + D L + +D +++ Sbjct: 431 AAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELEEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F + E L+ Sbjct: 491 PFGREFQKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQLI 549 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 550 I--GDYIKACYELQKEEFLGQINLSLNIKTIE 579 >gi|325914664|ref|ZP_08177005.1| single-stranded DNA-specific exonuclease [Xanthomonas vesicatoria ATCC 35937] gi|325539166|gb|EGD10821.1| single-stranded DNA-specific exonuclease [Xanthomonas vesicatoria ATCC 35937] Length = 642 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 164/593 (27%), Positives = 261/593 (44%), Gaps = 33/593 (5%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSIDY----AKDFLNPSIRLLMPDPLILTDCDKAA 82 L ++ + ARV+ R + + + + P I L L D D A Sbjct: 51 DALILRSAERDGFTPLQARVIAGR-MKAEDSGLSVRQRVLPRIADL-DSYHQLPDIDIAV 108 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVAL----MMRFLSHCSVNANMYIPDRIVDGYGPN 138 RI AI E I D+D DG+ + A+ ++ + + ++ R+ +GYG + Sbjct: 109 DRICTAIQGREVIACVVDHDADGSTAGAVMLASLVDYFGMAQQDVLLFNSHRMKEGYGVS 168 Query: 139 PSLMEKFINEGA--QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YAL 194 +++++ + LIIT D GS +D + +GID +V DHH++ + IP A+ Sbjct: 169 NAVVDRILQHHPLPSLIITGDQGSADHDRITRMREEGIDTVVTDHHEIPARGIPQDAVAV 228 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDV 253 VNP R D ++ V +LV+ + L +P + L LLD VAL + CD Sbjct: 229 VNPARADSSFADKNVAGCHVAWLVMCAVRAELINRGHLPADAPRLGDLLDWVALGSACDA 288 Query: 254 VPLIG--LNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 V L NRA + GL V + P + + + +A +L + IGP +NA R+ Sbjct: 289 VSLSKSINNRALIAHGLKVMNARRRPAWEGMAVVLGKKDAYSAPDLAWKIGPRLNARSRL 348 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 E+ G + L+S D E LA L+ N RR +E M A A Q + I Sbjct: 349 SEAMTGVQFLMSKDYDEAVRLATVLEEDNTTRRGIEKEMTATAMAIAALQASS--DSPAI 406 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE--EDGKGIGSGRSIEGFDIGKMVSFA- 428 VV + H G G+ A+RL E GRP+ +S + E G GS R+ G +I + + Sbjct: 407 VVCLENGHAGCHGITASRLTEALGRPTMMLSPKEGEMGVFTGSLRTAAGVNIKQAMDQVV 466 Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 E G+L+ GGH A GL V+ N L + F + V P+ DG L+AS Sbjct: 467 EWEPGLLLSHGGHHGAGGLRVQAGNIHLLQELFCEAVLLQVHPSQLHPLIHTDGELDAS- 525 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIA 545 ++A++D L PYG PVF ++ S RV+ H++++ + + AI Sbjct: 526 PSLAMVDELAQLEPYGREFDPPVFHGQ-FQVLSARVIGADKTHIKLSLKDRYGGVTSAIW 584 Query: 546 FRVYGT------PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 F T P + + G ++ L N +RG+ L++ A Sbjct: 585 FGAIKTSVFRPEPSEADVPVAAGDMVNAAYTLTSNTYRGNTSVDLQIKHARKA 637 >gi|297566940|ref|YP_003685912.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus silvanus DSM 9946] gi|296851389|gb|ADH64404.1| single-stranded-DNA-specific exonuclease RecJ [Meiothermus silvanus DSM 9946] Length = 723 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 151/578 (26%), Positives = 247/578 (42%), Gaps = 51/578 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W + IP + A VL NR F +P++ + L + Sbjct: 3 WRFRPW-PSRASLEPLMSTLGIPPLAAAVLFNRG--------FRDPALLDPPLELLPIRG 53 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 ++AA R+V+A+ E+I I GDYD DG A+++ L+ + ++P R+ +GYG Sbjct: 54 LEEAAWRVVRALEQGERIRIHGDYDADGLTGTAILLGGLARLGAKVHAFVPHRLHEGYGV 113 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + + L ITVDCG +++ L+ GI V+V DHH P V+P Sbjct: 114 LMERIPEHLE-ACDLFITVDCGISNHAELKSLVEHGIGVLVTDHHSPGETPPPGLV-VHP 171 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 +L+G H AGV +L+L + +L V DL A+ T+ DV PL+ Sbjct: 172 ALTPELNGLPHPTGAGVAYLLLWKVRELLGLGAPV-------EFADLAAIGTIADVAPLL 224 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G NRA V +GL R+ + GL+ L + + + I P INA R+G++ L Sbjct: 225 GFNRALVKEGLRQLRQSAHLGLRELASQHCKDYTAVE--VAFRIAPRINAASRLGQAELA 282 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 LL +D+ LA L+ LN R+ +E ML + + A VV Sbjct: 283 LELLTTDNLLAARQLAEDLNTLNARRQRIEEEMLNRVLPTL------DHAAPAYVVHDPE 336 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 + G++G++A+R+ E+F +P F I+ +G GS RS G I + + L + Sbjct: 337 GNAGVMGIVASRILERFYKPVFIIA-----EGKGSVRSTPG--ISAVGALRASAEFLKRL 389 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHA AAG + N + ++ +DG L L + L+ Sbjct: 390 GGHAQAAGFAIAEENIPAFREAVYRYVAEHPAP---VAEVYLDGSLTGEDFT-ELYEALQ 445 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 P G NP P+F K + + + HL+ + ++ + ++ G L + Sbjct: 446 FLEPLGQENPEPLFYLRG-KPEKVATMGEGRHLRFYLDG-----IKVVRWKDSGENLPQA 499 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + + L +N W+G + +LR L E Sbjct: 500 -------EVELAASLTLNEWQGERALELRALAYRAPEP 530 >gi|222097961|ref|YP_002532018.1| single-stranded-DNA-specific exonuclease recj [Bacillus cereus Q1] gi|221242019|gb|ACM14729.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus Q1] Length = 553 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 150/586 (25%), Positives = 247/586 (42%), Gaps = 45/586 (7%) Query: 18 WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 W L L + + I ++ L + + + FL P +P Sbjct: 3 WKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFH-NP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +A RI++AI E I IFGDYD DG S ++ + L + +P R Sbjct: 62 FLLNDMKRAVDRILKAIQQKESIYIFGDYDCDGITSSTILKQALEKIGAHVMARLPLR-E 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG +P ++ + E L+ITVD GS+++ A++ A +GIDVIV DHH+V E Sbjct: 121 EGYGLSPYAVD-SLPENVSLLITVDNGSSAHPAIKRAKEKGIDVIVTDHHEVLGEHPNCL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A VNP R D+ HLC AGV ++ ++ L+QD + ++ + T+ D Sbjct: 180 AFVNPKRKDNTYPYQHLCGAGVALKLIQALFITLKQDWVKETW----NYIEYATIGTIAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 V+PL G NR GL R NP LK E++ ++ + + +G+ IGP +N+ GRI Sbjct: 236 VMPLTGENRIICWYGLYKMRNCPNPLLKLFREQLQLN-YVDSTTIGFFIGPMLNSCGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + NLG LL + L LN R+ + + A + Q + ++ Sbjct: 295 DPNLGGALLQKVEPTT--DDIQLLINLNNKRKQLTNEQFRIASKIIQQQSLE---RDSLL 349 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H GI G+LA+++ + +P+ ++ + G S RS G + + Sbjct: 350 VVQGDFHKGITGILASKISSHYKKPTIVLTQDGVG----SARSGNGSKFSIIQAIQSGGE 405 Query: 433 ILVKGGGHAMAAGLTVER--VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L K GGH AAGL+++ N + Q+ P+ Sbjct: 406 LLKKYGGHEAAAGLSIDPTEQNVQLFREQMQEAVKQQ---TDPKPISYFISEFPIYNFPN 462 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L D L + P+G G+P P+F N H+++ F + R Sbjct: 463 HLFDDLMALEPFGNGHPKPIFRSQNIFACGHSCFGKNKEHVELFFSKK----------RA 512 Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + G +R RM V + + ++ + D V+ Sbjct: 513 HAYSHGHLFQNWNRYNRMDVLYTP--HSY---EKLDFLINDIRLVQ 553 >gi|254412677|ref|ZP_05026450.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus chthonoplastes PCC 7420] gi|196180412|gb|EDX75403.1| single-stranded-DNA-specific exonuclease RecJ [Microcoleus chthonoplastes PCC 7420] Length = 809 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 145/606 (23%), Positives = 264/606 (43%), Gaps = 54/606 (8%) Query: 17 RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 +W + L + + + A++L R + + F+NP + P Sbjct: 5 QWHVQPSPDVPQWFLDAVKSYAPASEGYYAAQLLWQRGIRELNQLAGFINPDLYQ-PASP 63 Query: 73 LIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIP 128 + +A +R+ QA +K+ I+GD+D DG + +++ L + + YIP Sbjct: 64 FEFGQEMKRAVQRLQQARDKGKKVAIWGDFDADGITATSVLWDGLGQFLPQNQHLTYYIP 123 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R+ + +G N +++ G QLI+T D GST+ + YA GID+I+ DHH + E Sbjct: 124 NRLTESHGLNCPGIDQLAESGTQLIVTCDTGSTNLSEIDYADQLGIDIIITDHHTLPEER 183 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 +++NP + HL V + ++ +Y+ L + P L LLDLVA+ Sbjct: 184 PNVVSIINPRYFAETHPLFHLSGVAVAYKLVEALYQTLPDIPQQP----LEDLLDLVAIG 239 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR----QGNPGLKALIERVNISSPITAENLGYMIGPS 304 + D+V L G R +G+ ++ + PG+ L+E S ++ + +GP Sbjct: 240 LIADLVQLSGDCRYLAQRGIQTLQQQLKTRTRPGVAKLLELCQRSGD-RPTDISFGLGPR 298 Query: 305 INAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA R G+++ LL D + LA++ ++ N R+ ++ + EQ + K+ Sbjct: 299 INAVSRIQGDASFCVELLTRRDETYTQTLALETELANSRRKSLQKDITEQVKRKLAQL-- 356 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG-----------KGIGS 412 D+ VIV++ +W G++GL+A ++ +++GRP+ +S E+ GS Sbjct: 357 DLSTTCVIVLDDPQWSAGVLGLVAGQIAQEYGRPTVLLSTGEEWGGEGSTLNTSPIARGS 416 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 RS+ G D+ ++V +E +L + GGH AAGL++ N + + + A Sbjct: 417 ARSVNGIDLYELVQS--QEHLLHRFGGHPFAAGLSLPVENIPLFSEGINQKLRQQLAAQD 474 Query: 473 --TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQS------IRVV 524 PV D V+ +A+ L L+ P G GNP P N +S + Sbjct: 475 ALLAPVVTADIVVTVAALGKPLFQELKLLEPCGMGNPVPKLLIENCWFESVWNRNTQDLK 534 Query: 525 NLA--HLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 +++ E D T I + G + + R + L N ++ Sbjct: 535 GKKVQYIKTELEIWDDSTSVGFPGIWW-------GHYRDEVPKGRCNAIVELDYNNFKKR 587 Query: 580 KRCQLR 585 +L Sbjct: 588 PEVRLV 593 >gi|237743258|ref|ZP_04573739.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 7_1] gi|229433037|gb|EEO43249.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 7_1] Length = 557 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 141/564 (25%), Positives = 255/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L R S + + F+NP +P + + +I+ N Sbjct: 4 MVKEKSTDELIKELLEKRGYESRNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISVREN 62 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + A+ YIP R YG + ++ F + + Sbjct: 63 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIADCYIPSRKETDYGVSKKSIDYFHKKQGK 122 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 +ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 123 FVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTIKEKFDDEILYLNPKLSKTYKFQYLSG 182 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 183 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 237 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 238 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 297 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + SVI + +WHPG++G++++RL Sbjct: 298 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPFDKLSVIFLSSPKWHPGVIGVVSSRL 357 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 358 TIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 414 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++F + D L + + +E GP+G+ NP Sbjct: 415 ENISKVKEYFINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 474 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D+ + A+ F + +++ K + Sbjct: 475 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDNVSYNAVGFELAEKIASDYM----NKTYN 530 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 531 IVYYPEKIILNDEEVTQIILKSIK 554 >gi|237742960|ref|ZP_04573441.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 4_1_13] gi|229430608|gb|EEO40820.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium sp. 4_1_13] Length = 557 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 137/564 (24%), Positives = 255/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L RN S + + F+NP +P + + +I+ A N Sbjct: 4 MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 62 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + + YIP R YG + ++ F + Sbjct: 63 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRHGK 122 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI++IV DHH+ E+ L +L +L Sbjct: 123 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 182 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP++ NR + KGL + Sbjct: 183 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKII 237 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 238 KNTEVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 297 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + K+ + + SVI + +WHPG++G++++RL Sbjct: 298 NIIEEMKEQNKQRRTLEKHIFDDVMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 357 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 358 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 414 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++ + D L + + +E GP+G+ NP Sbjct: 415 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 474 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F + KL ++ + +D+ + A+ F + +++ K + Sbjct: 475 HPLFFDRDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYM----NKTYN 530 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 531 IVYYPEKIILNDEEVTQIILKSIK 554 >gi|256846932|ref|ZP_05552386.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_36A2] gi|256717730|gb|EEU31289.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_36A2] Length = 556 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 256/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L RN S + + F+NP +P + + +I+ A N Sbjct: 3 MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 61 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + + YIP R YG + ++ F + Sbjct: 62 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRQGK 121 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI++IV DHH+ E+ L +L +L Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 181 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP++ NR + KGL + Sbjct: 182 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKII 236 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 237 KNTEVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + + SVI + +WHPG++G++++RL Sbjct: 297 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 356 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 357 AIKFNIPVILVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++ + D L + + +E GP+G+ NP Sbjct: 414 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 473 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F + KL ++ + +D+ + A+ F + +++ K + Sbjct: 474 HPLFFDRDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYM----NKTYN 529 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553 >gi|19705314|ref|NP_602809.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713285|gb|AAL94108.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 556 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 146/564 (25%), Positives = 255/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + ++V +L R+ S + + F+NP +P + + +I+ A N Sbjct: 3 MVKEKSTDELVKELLEKRDHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 61 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + ++A+ YIP R YG + ++ F + Sbjct: 62 KEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYIPSRKETDYGVSKKSIDYFHKRHGK 121 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 122 LVITVDTGYNTIEDVRYAKDLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKNYKFQYLSG 181 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 182 AGVAFKLAQGICMSLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 237 KNTKIKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + + SVI + +WHPG++G++++RL Sbjct: 297 NIIEEMKEQNKQRRALEKNIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 356 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + L + GGH +AAG + + Sbjct: 357 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVRNFLERYGGHDLAAGFVIHK 413 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++F K + + D L + + +E GP+G+ NP Sbjct: 414 ENINKVKEYFIKAIPKMKLEHNKSKKDYEKNFDFELPLEDLGDKTFEFMEKMGPFGSNNP 473 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D A+ F + E K + Sbjct: 474 HPLFFDRNLKLDDIKKFGVDFRHFNGIIYKDKVNYNAVGFELAE----EISPDYMNKTYN 529 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553 >gi|294784273|ref|ZP_06749568.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_27] gi|294488139|gb|EFG35490.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium sp. 3_1_27] Length = 556 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 256/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L RN S + + F+NP +P + + +I+ A N Sbjct: 3 MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 61 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + + YIP R YG + ++ F + Sbjct: 62 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRHGK 121 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI++IV DHH+ E+ L +L +L Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 181 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP++ NR + KGL + Sbjct: 182 AGVAFKLAQGICMSLGLD-----MEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKII 236 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 237 KNTEVKGLSYLLNYLRLNKKILTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + + SVI + +WHPG++G++++RL Sbjct: 297 NIIEEMKEQNKQRRALEKHIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRL 356 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 357 AIKFNIPVILVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++ + D L + + +E GP+G+ NP Sbjct: 414 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNP 473 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F + KL ++ + +D+ + A+ F + +++ K + Sbjct: 474 HPLFFDRDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYM----NKTYN 529 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553 >gi|315930485|gb|EFV09537.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 305] Length = 493 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 140/503 (27%), Positives = 255/503 (50%), Gaps = 30/503 (5%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +A+ +EK+ I GDYD Sbjct: 9 IKKILASR------FEKDLHTKLCDL-PLPCCLKDAYKAANRIKEAVEKNEKVAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +A + + ID+I+ DHH + A+A++NP + D + +C A V + ++ + Sbjct: 119 LEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAAL 178 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + + +D+ L+L+A+A V D++ L LNRA V +G+ + +A+ Sbjct: 179 KEVCKLK------YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI 232 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + +N+G++I P IN+ GR+ ++++ L + D + ++ N++ Sbjct: 233 -KHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNES 291 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ E + E + ++ + S IVV G WH G++G++A+RL + F +P+F S Sbjct: 292 RKDEEKQLFEDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFS 345 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E+ GS RS+ DI ++S IL GGH AAG+++ NF + + +K Sbjct: 346 QNEEHL-KGSARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKK 402 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 I + +I G+L S ++ ++++LES P+G NP P F N +++ + Sbjct: 403 ECSQISESEFL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKK 461 Query: 523 VVNL--AHLQMTFESQDSETLQA 543 ++ HL++ +++++T++A Sbjct: 462 LLGKDEKHLKLVL-TKENKTIEA 483 >gi|254302274|ref|ZP_04969632.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322466|gb|EDK87716.1| recombination protein J [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 556 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 144/564 (25%), Positives = 259/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L R+ S + + F+NP L +P + + +I+ A N Sbjct: 3 MVKEKSTNELIKELLEKRDHESKNQIEKFINPDYSDL-KNPFDFENMEAIVNKIISAREN 61 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 +EKI I+GDYDVDG + A + +F + ++A+ YIP R YG + ++ F + Sbjct: 62 NEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYIPSRKETDYGVSKKSIDYFHKRHGK 121 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKSYKFQYLSG 181 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + + L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 182 AGVAFKLAQGVCMKLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 237 KNTKVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E ++ + A K+ +++ SVI + +WHPG++G++++RL Sbjct: 297 NIIEEMKEQNKQRRALEKSIFDDAMRKIKNLKIPLEKLSVIFLSSPKWHPGVIGVVSSRL 356 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 357 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++F + D L + + +E GP+G+ NP Sbjct: 414 ENISKVKEYFINTIPKMKLEYNKNKKDYEKDFDFELPIEELGDKAFEFMEKMGPFGSNNP 473 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D A+ F + E K + Sbjct: 474 HPLFFDRNLKLDDIKKFGVDFRHFNGIIYKDKVNYNAVGFELAE----EISSDYMNKTYN 529 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553 >gi|160913539|ref|ZP_02076230.1| hypothetical protein EUBDOL_00015 [Eubacterium dolichum DSM 3991] gi|158434091|gb|EDP12380.1| hypothetical protein EUBDOL_00015 [Eubacterium dolichum DSM 3991] Length = 553 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 135/569 (23%), Positives = 250/569 (43%), Gaps = 46/569 (8%) Query: 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 R L I Q +P + A+VL ++ + + K+ L ++ DP +AA RI Sbjct: 7 DSKRQLDIQQNFHLPYLAAKVLASKQLCDEEIKELLA---SPILSDPFQAKGIQEAADRI 63 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 A EK+++ GDYD DG + A+M+ L VNA YIP+R +GYG +E Sbjct: 64 YLAKQQKEKVLVCGDYDADGICATAIMVDALQRYGVNAGFYIPNRFKEGYGLQVHTVEMA 123 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 +G L+ITVD G ++DAL+ A +DVIV DHH ++ + P + L++P + + Sbjct: 124 KQKGYSLLITVDNGVKAFDALKKAKELELDVIVSDHHAMEEDF-PCFCLLHPQLMGEQFS 182 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + + R L D + + +A + DV+ + RA + Sbjct: 183 TLSGAGVALT------LARALIGD--------VEEHIVYACVAAIADVMTVKKETRAIIK 228 Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLI 322 GL R+ ++ L T + + I P +NA GR+ + +N R L+ Sbjct: 229 LGLQYLRKGAALPIQMLANDRYPRWNETL--IAFQIVPKLNATGRLADLANANNTVRYLL 286 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 + +++ +A ++ LN R+ M M+E A + V + ++ + +H G+ Sbjct: 287 LHNREDISRMAKQICDLNDKRKAMSDEMVETARSLVHDEY------DFQLLFHESFHEGM 340 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAM 442 VG++A +L+E+ +P + + GS RS + D+ + L GGH Sbjct: 341 VGIVAGKLQEELQKPVMVATLRDH-TFKGSIRSGKLLDLTDFFQGCKQ--DLTAYGGHVA 397 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGP 501 AAG+ Q + +N + + + V L++ +++ ++ L P Sbjct: 398 AAGIGFPFEKK----QNIQDYVNNRMKDIQLQKEIVYEAVALDSKEISMQEVEGLSMLAP 453 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560 +G G P+F N + +++ H + ++ ++A+ F + E L S Sbjct: 454 FGNGFEEPLFFLQNQDILEEKLLKKGIHRKWLLKND----VEAMYFNCQD--MKECL--S 505 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 G ++ + G+L +N + + L V++A Sbjct: 506 EGAQLSLLGNLRINTFLKKRNVSLFVVEA 534 >gi|163781645|ref|ZP_02176645.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp. 128-5-R1-1] gi|159882865|gb|EDP76369.1| single-strand-DNA-specific exonuclease RecJ [Hydrogenivirga sp. 128-5-R1-1] Length = 547 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 158/573 (27%), Positives = 262/573 (45%), Gaps = 47/573 (8%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 ISG W L + + ++A+++VNR D ++ ++ L+P Sbjct: 2 KGISGKEWQVLSHSIEPP--PELVDIYG--RLLAQLIVNRGY-EDSHEELFELKLKYLLP 56 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +L + ++ RIV+++ E+I+IFGDYDVDG A++ L +P+R Sbjct: 57 Y-NLLPNVEEGIERIVESVRRGERIIIFGDYDVDGITGTAILYEVLRAAGSKVTPVLPNR 115 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 GYG N L+E + A+L+ITVD G+++ + + G+DV+VIDHH V E Sbjct: 116 GT-GYGLNRRLIE-VFSRYAELLITVDNGTSAVSEIDNS---GMDVVVIDHHNVPEEVPR 170 Query: 191 AYALVNPN-RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 L+NP L ++ + F + ++ R L D D+ +LLDL A+ T Sbjct: 171 RAVLINPKLSNGVPKDMKELSSSAMCFYMAAVLVRRLGLD------MDVRTLLDLAAMGT 224 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGN-----PGLKALIERVNISSPITAENLGYMIGPS 304 V DV+P+ NR V KGL + + PG++AL+ + I+A+++ Y I P Sbjct: 225 VGDVMPMNRTNRILVSKGLSLLEGIASGAVDKPGVRALLRVARVGERISAKDIAYSIAPR 284 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 INA GR+ L LL D + E+LA K++ LN RR + + +A KV+ + Sbjct: 285 INAPGRVSNPKLSLELLTEKDPKRAELLARKIESLNIKRRAITDNVYREAYRKVM----E 340 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + I V + WH G++G++A RL + G+P S +GS RS+EG D+ Sbjct: 341 SSSRNFISVWSEGWHVGVLGIVAGRLSSQMGKPVAVFS-RGANHSVGSVRSVEGIDVY-- 397 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + +K GGH AAGLT+E + + ++ L P ID L Sbjct: 398 EGLSKLSHMFLKWGGHMQAAGLTLESRLLEAFSEEVDELFSHVPKEL---PPLYIDMELP 454 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 S V ++ + P+G NP PVF +++ +++ ++ + +A+ Sbjct: 455 LSGVTPDVLRSVSRLEPFGEKNPVPVFLSEEVEVKGVQLRGSR-AKLKLGDR-----EAV 508 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHL---CVN 574 + F G R V L +N Sbjct: 509 CW-----EPLLFKSLKTGNRFRVAYSLVDGDIN 536 >gi|296328562|ref|ZP_06871081.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154371|gb|EFG95170.1| single-stranded-DNA-specific exonuclease RecJ [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 554 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 145/564 (25%), Positives = 254/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + ++V +L R+ S + + F+NP +P + + +I+ A N Sbjct: 1 MVKEKSTDELVKELLEKRDHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIISAREN 59 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + ++A+ YIP R YG + ++ F + Sbjct: 60 KEKIFIYGDYDVDGISGTAFLTKFFNEIGISADCYIPSRKETDYGVSKKSIDYFHKRHGK 119 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI+VIV DHH+ E+ L +L +L Sbjct: 120 LVITVDTGYNTIEDVRYAKDLGIEVIVTDHHKTVKEKFDDEILYLNPKLSKNYKFQYLSG 179 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 180 AGVAFKLAQGICMSLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 234 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 235 KNTKIKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 294 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + + S+I + +WHPG++G++++RL Sbjct: 295 NIIEEMKEQNKQRRALEKNIFDDAMRKIKNLKIPLDKLSIIFLSSPKWHPGVIGVVSSRL 354 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + L + GGH +AAG + + Sbjct: 355 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVRNFLERYGGHDLAAGFVIHK 411 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ +F K + + D L + + +E GP+G+ NP Sbjct: 412 ENINKVKKYFIKAIPKMKLEHNKSKKDYEKNFDFELPLEDLGDKTFEFMEKMGPFGSNNP 471 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +D A+ F + E K + Sbjct: 472 HPLFFDRNLKLDDIKKFGVDFRHFNGIIYKDKVNYNAVGFELAE----EISPDYMNKTYN 527 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 528 IVYYPEKIILNDEEVTQIILKSIK 551 >gi|328675693|gb|AEB28368.1| Single-stranded-DNA-specific exonuclease recJ [Francisella cf. novicida 3523] Length = 581 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 144/572 (25%), Positives = 246/572 (43%), Gaps = 30/572 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R ID + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVREIDSIELILNGSIKDL-SSPFLFKDIEKALERLYQALQNNEVIGL 78 Query: 98 FGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L+ YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFNYPKQKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQGHL 209 LIIT D GST + GID IV DHH + E P A++NPN+ + Sbjct: 139 LIITADNGSTDEPRIAILKQNGIDTIVTDHHAIPPEGAPKSAIAVLNPNQQGCNYPDKAI 198 Query: 210 CAAGVVFLVLVLIYRILRQDNK-VPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVVK 266 V +L + + R Q+NK + + L +LLD VA+ TV D V + NR Sbjct: 199 AGCMVAWLFMAALRRKYLQNNKAISQTYGLSNLLDFVAIGTVADCVSMATSHNNRIVTKF 258 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 259 GIEQLKNNQRLCWDFV-----DKDKLSSEYIGFNIAPILNSDGRVSDALGSVSFLLEEDE 313 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 ++E + L N R+ ++ + ++A A+ QQ + + + H GI G+ Sbjct: 314 HKIENIFDNLKQQNNQRKEIQKKLTQEAIAQAYHLN---QQKKSLCILLEDGHSGIHGIS 370 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHAM 442 A+R+KE FG+P S + + SG + +I E +++K GGH Sbjct: 371 ASRIKEMFGKPVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIVVKEPQLIIKYGGHKG 430 Query: 443 AAGLTVERVNFGRLCDFFQKFAHNIV--PALITTPVFKIDGVLNASAVNIALIDMLESAG 500 AAGLT+ + NF + F+ +IV +I P+ + D L + +D +++ Sbjct: 431 AAGLTIRKSNFDKFYQLFENEITDIVIKQNIILEPIIEYDFELEEHHFELETLDKIDALE 490 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 P+G P+F L+++R+V H Q+ ++ +++AI F Sbjct: 491 PFGREFEKPLFCNE-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNN-KMLEQ 548 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G + L + G L + Sbjct: 549 LVIGDSIRACYELQKEEFLGQVNLSLNIKTIE 580 >gi|309775427|ref|ZP_07670430.1| putative single-stranded-DNA-specific exonuclease RecJ [Erysipelotrichaceae bacterium 3_1_53] gi|308916816|gb|EFP62553.1| putative single-stranded-DNA-specific exonuclease RecJ [Erysipelotrichaceae bacterium 3_1_53] Length = 535 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 246/563 (43%), Gaps = 44/563 (7%) Query: 28 NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87 R+ I + + ARVL + ++ + + L + + DP + A+RI Q Sbjct: 9 ERSKQIQDTFQLTSLCARVLAAKELTDEQITELLK---KPQLADPFSAKGMQEVAQRIYQ 65 Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147 A N E++M+ GDYD DG S A+++ L + A YIP+R +GYG +++ Sbjct: 66 AKQNKEQVMVCGDYDADGICSTAILVDALRRYGIQAGFYIPNRFAEGYGLQKHTVQQAHE 125 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 +G +L+ITVD G + DALQ A N+G+DVIV DHH + E P L++P + + Sbjct: 126 KGYRLLITVDNGVKALDALQEAKNRGVDVIVTDHHSMDEEF-PCLYLLHPVCMGEQFE-- 182 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 L AGV + + +++ + L +A + DV+PL RA V G Sbjct: 183 TLSGAGVALELSRALLGEVKEH------------VVLACVAAIADVMPLRKETRAIVQLG 230 Query: 268 LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLISD 324 L R+ ++ L T + + I P +N GR+ + +N R L+S Sbjct: 231 LQYLRQGVCQPIQLLANDRYPKWDETL--IAFQIVPKLNTTGRLADLANANNTVRYLLST 288 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384 ++++ +A ++ LN R+ M M++ A V + ++ D +H G+ G Sbjct: 289 KLEQIQHMAKQIRELNDRRKTMSDDMVKVARTLVRPEY------RFQLLFHDSFHEGMAG 342 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAA 444 L+A +L E+ P + E GS RS++ D+ + L GGH AA Sbjct: 343 LVAGKLSEELQLPVMVAAQREQ-MFKGSIRSLDLLDLTTFFNDLRP--SLYAYGGHRAAA 399 Query: 445 GLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 G+ N + D+ +I +++ + ++ ++ L P+G Sbjct: 400 GIGFPYENKQIIQDYVNTRMEHI--RFQQESCYEV-IPIRVQEASLQEVESLSVLAPFGC 456 Query: 505 GNPNPVFAFPNHKLQSIRVVNLA-HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 G P+F ++S R++ H + T + +A+ FR T + Sbjct: 457 GFEEPLFYLEEAAVKSCRLLGNGEHAKWTLND----SFEAMYFRCGST----YEHLHEKN 508 Query: 564 RMHVTGHLCVNYWRGSKRCQLRV 586 ++ G+L +N + G K+ + V Sbjct: 509 NVNFIGNLRINSFMGRKKVNIFV 531 >gi|34762750|ref|ZP_00143739.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887600|gb|EAA24680.1| Single-stranded-DNA-specific exonuclease recJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 556 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 142/564 (25%), Positives = 256/564 (45%), Gaps = 19/564 (3%) Query: 33 ITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 + ++ + +++ +L RN S + + F+NP +P + + +I+ A N Sbjct: 3 MVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFR-NPFDFENMEAIVNKIIFARKN 61 Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 EKI I+GDYDVDG + A + +F + + + YIP R YG + ++ F + Sbjct: 62 KEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRQGE 121 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 L+ITVD G + + ++YA + GI++IV DHH+ E+ L +L +L Sbjct: 122 LVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYLSG 181 Query: 212 AGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 AGV F + I L D + LD+V + T+ DVVP+I NR + KGL + Sbjct: 182 AGVAFKLAQGICMKLDLD-----MEIIYKYLDIVMIGTIADVVPMIDENRLIIKKGLKII 236 Query: 272 RRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + GL L+ + +T ++ Y I P IN+ GR+G S +G+ + DD +L Sbjct: 237 KNTEVKGLSYLLNYLRLNKKTLTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLY 296 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 + ++ N+ RR +E + + A K+ + SVI + +WHPG++G++++RL Sbjct: 297 NIIEEMKDQNKQRRALEKHIFDDAMRKIKNLKISPDKLSVIFLSSPKWHPGVIGVVSSRL 356 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 KF P ++ E G S RS+ DI + + +L + GGH +AAG + + Sbjct: 357 AIKFNIPVVLVA-IEGDYGKASCRSVG--DISIFNLLSDVKNLLERYGGHDLAAGFVIHK 413 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNP 507 N ++ ++ + D L + + + +E GP+G+ NP Sbjct: 414 ENISKVKEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKIFEFMEKMGPFGSNNP 473 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 +P+F N KL I+ + +DS + A+ F + +++ K + Sbjct: 474 HPLFFDRNLKLDEIKRFGVDFRHFNGIIYKDSVSYNAVGFELAEKIASDYM----NKTYN 529 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + + Q+ + Sbjct: 530 IVYYPEKIILNDEEVTQIILKSIK 553 >gi|198282776|ref|YP_002219097.1| phosphoesterase RecJ domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665215|ref|YP_002424972.1| single-stranded-DNA-specific exonuclease RecJ [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247297|gb|ACH82890.1| phosphoesterase RecJ domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517428|gb|ACK78014.1| single-stranded-DNA-specific exonuclease RecJ [Acidithiobacillus ferrooxidans ATCC 23270] Length = 605 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 171/589 (29%), Positives = 266/589 (45%), Gaps = 28/589 (4%) Query: 25 EGINRALAITQKHAIPDIVARVLVNR--NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAA 82 L + + AR++ R +V + + LN + L P P +L D D A+ Sbjct: 12 PVAAAILRAALELGYTPLQARIIAGRLSDVDLANLPELLNLQLSGLTP-PDLLPDIDIAS 70 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS-HCS---VNANMYIPDRIVDGYGPN 138 IV AI I++ D+D DGA++ A++ + + YI R+ DGYG Sbjct: 71 ECIVSAIKQGLPILLISDFDADGASAHAVLKFAFRDYFGVPEARIHSYIGHRLRDGYGVT 130 Query: 139 PSLMEKFI--NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY--AL 194 +L ++ I LIIT D GST ++ + + G VIV DHH V ++ P A Sbjct: 131 ETLTDRIIAEAPRPALIITADQGSTDHERIARLRDHGFTVIVTDHHGVPADGPPTAAMAC 190 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATVCDV 253 VNP R D ++ V +L+ + R L QD +P + L LLDLVAL T+ D Sbjct: 191 VNPVREDSAFPDPYIAGVHVAWLLCCAVRRRLIQDGDLPASAPKLGGLLDLVALGTMADC 250 Query: 254 VPLIG--LNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAENLGYMIGPSINAGGR 310 V L N+A + +GL + P +AL N PITA L + P INA GR Sbjct: 251 VDLARSTNNKAIIARGLAIMNSPVARPAWQALYVATNCKGPITAATLAFSFAPVINARGR 310 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + LL+SD E LA+ N R+ ++S ML+++ + Q D A+ Sbjct: 311 LDSALGSVDLLMSDSVPVAEGLALHFVEHNTERKAVQSNMLQRSAKQAAQQVRD--GAAA 368 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-GSGRSIEGFDIGKMVSFA- 428 I + H G+ G+ AARL E FGRP S + +G+ I S R++ GF + ++ Sbjct: 369 ITIFDPEGHAGVHGICAARLAESFGRPVAYFSPKAEGQHITASLRTVHGFHVRDALAEIA 428 Query: 429 -VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 V GGHA A G+T++R R + + A + + P DG L A Sbjct: 429 GRYPDDFVAWGGHAGAGGVTLKRDGLQRFAEAWAAIAASALRDQRAGPEIVTDGPLEV-A 487 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN-LAHLQMTFESQDSETLQAIAF 546 + A+++ L + P+G PVF +++ +R V HL++ + D+ AI F Sbjct: 488 PSFAVVEELAALEPFGRQWEPPVFRSHG-RIEQVRPVGDGRHLKLVVKM-DAMDYDAIWF 545 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS-PVEG 594 + G+ + + L VN +R + QLR+ + EG Sbjct: 546 GAVENGV---CPVGVGQTVLMAYELDVNTFRDTTTLQLRIRHVALVSEG 591 >gi|254421355|ref|ZP_05035073.1| single-stranded-DNA-specific exonuclease RecJ, putative [Synechococcus sp. PCC 7335] gi|196188844|gb|EDX83808.1| single-stranded-DNA-specific exonuclease RecJ, putative [Synechococcus sp. PCC 7335] Length = 817 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 147/602 (24%), Positives = 266/602 (44%), Gaps = 52/602 (8%) Query: 27 INRALAITQKHAIPDIV--ARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL-TDCDKAA 82 + + Q + AR+L R + + + + F PS P + KA Sbjct: 19 PDWIETVAQITGLTRPEKGARLLWARGIRTAEALRGFCWPS-AYTPASPFAFGEEMTKAV 77 Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS---VNANMYIPDRIVDGYGPNP 139 R++ A EK+ I+GD+D DG S A++ L +IP+R+ + +G + Sbjct: 78 ARLMLARDRVEKVAIWGDFDADGITSTAVLWDGLKQFFDEPGQLTYFIPNRLKESHGLSI 137 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 +++ + LI+T D GST+ D + YA + G++VIV DHH + + A+VNP Sbjct: 138 VGIDQLAAQDVTLIVTCDTGSTNPDEIDYAHSLGLEVIVSDHHTLPAVRPNVVAIVNPRA 197 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 L +L + + ++ +Y L P L L DLVA+ + D+V L G Sbjct: 198 LPSDHPMANLSGVAMAYKLVEALYERLPDVPTRP----LSELTDLVAIGLIADLVELTGD 253 Query: 260 NRAYVVKGLMVAR------RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IG 312 R G+ + PG+ L++ + ++ + IGP INA R G Sbjct: 254 CRYLAQVGIEQLQTHLKSAYPIRPGVAQLLKLCRRAGD-RPTDISFGIGPRINAVSRIYG 312 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 E++ LL S DS + LA K ++ N R+ +++ +L+QA ++ + D+ VIV Sbjct: 313 EASFCVELLTSQDSDRCQDLAEKTELANTRRKALQNDVLKQATHQL--ETRDLSTTGVIV 370 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFE------EDGKGIGSGRSIEGFDIGKMVS 426 + +W G++GL+AA++ +++GRP+ ++ + +D GS RS+ D+ +VS Sbjct: 371 LCDPQWPVGVLGLVAAQVAQQYGRPTILLTQDTPADDGDDVLVRGSARSVNQIDLYDLVS 430 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNAS 486 + +L GGH AAGL++ + + + A +++PV ++D + + Sbjct: 431 S--QAHLLTGFGGHPYAAGLSLPAKDLPMFQAAINQQYRQKMGAELSSPVVQVDLSVTVA 488 Query: 487 AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI-------RVVNL-AHLQMTFE---- 534 + L L+ P G GNP P N +++ R +++ +FE Sbjct: 489 ELGQDLFQELKLLEPCGMGNPVPKLLIQNCWFENVWHQKLKDRTGGKVGYIKTSFELCDE 548 Query: 535 ---SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + S + + G + R V L N S+R ++R++D P Sbjct: 549 SGNHKSSSKFPGLWW-------GHYKEDVPPGRWDVVAELDYNSHPKSRRYEVRLIDIRP 601 Query: 592 VE 593 + Sbjct: 602 AQ 603 >gi|253581494|ref|ZP_04858719.1| LOW QUALITY PROTEIN: recombination protein J [Fusobacterium varium ATCC 27725] gi|251836564|gb|EES65099.1| LOW QUALITY PROTEIN: recombination protein J [Fusobacterium varium ATCC 27725] Length = 502 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 141/504 (27%), Positives = 250/504 (49%), Gaps = 18/504 (3%) Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149 EK+ I+GDYDVDG + ++ + + + YIP+R+ +GYG + ++ + Sbjct: 3 RKKEKVFIYGDYDVDGITAAVFLVLVFRNIGIEVDYYIPNRMEEGYGLDKKTIDFINTKN 62 Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209 +L+ITVD G S + ++YA + GIDVIV DHH+ EE + L+ +L D +L Sbjct: 63 GKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEEDDHLLLLNPKLSDTYEFKYL 122 Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 AGV V IY+ L+ D L +D+V + TV DVVP+ NR + +GL Sbjct: 123 SGAGVALKVAQGIYQKLKID-----IKALYQYMDIVMIGTVADVVPMTDENRIIIKQGLK 177 Query: 270 VARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 ++ GL L++ + + I ++ Y I P IN+ GRIG S +G+ + +D E Sbjct: 178 ALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLGRIGISKMGADFFLKEDDFE 237 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 + + ++ N+ RR +E + ++A ++ I+ I + ++WHPG++G++++ Sbjct: 238 IYNIIEEMKKSNKKRRELEKNIYDEANQEIAK--IGIKNLKCIFLSSEKWHPGVIGVVSS 295 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448 RL K+ P I+F++ G G S RS++G I F LV+ GGH +AAG V Sbjct: 296 RLSVKYNIPVTLIAFKD-GIGKASCRSVKG--ISVFNIFQKMSEKLVRFGGHDLAAGFIV 352 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + N + + F+ N + KID + ++ + + +ES PYG NP+ Sbjct: 353 KSENLEEVKNIFKTSIEN-IKIEKEKKSLKIDAEYSIENIDEDMFETMESISPYGLENPH 411 Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + ++I+ H ++ + +AF + G + E +S+ ++ Sbjct: 412 PLFIDRDLSFENIKKFGVDERHFNGIIR-KNGKNYHMVAFDL-GHKINEI--ESKIQKFD 467 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + +RG + Q+R+ D Sbjct: 468 IVYYPEKTLYRGEEIFQIRIKDIK 491 >gi|297622720|ref|YP_003704154.1| single-stranded-DNA-specific exonuclease RecJ [Truepera radiovictrix DSM 17093] gi|297163900|gb|ADI13611.1| single-stranded-DNA-specific exonuclease RecJ [Truepera radiovictrix DSM 17093] Length = 725 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 153/580 (26%), Positives = 246/580 (42%), Gaps = 48/580 (8%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI-- 74 RW + + ++P +VA VL R + A L P P Sbjct: 15 RWAVRPSAP-PAEVARLVRAFSLPPLVASVLWARGLRSPEA---LQP--------PFERT 62 Query: 75 -LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + AA R+ +A+ ++I+I GDYD DG + A++ L +IP+R+ D Sbjct: 63 RIPALATAAERLAEALARGKRILIHGDYDADGISGTAVLTLGLRALGGRVTPFIPNRLRD 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 GYG +P+ + + GA L ITVDCG ++ + G++VIV DHH Sbjct: 123 GYGVHPARVAEHAA-GADLFITVDCGISNRAEVAALQAAGVEVIVTDHHHPGQVLPDCLT 181 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + G L AGV + +L ++ L + V DL + TV DV Sbjct: 182 VHPSLSPYAKKGLPELTGAGVAYHLLWALHEHLGLEAPV-------EYSDLATIGTVADV 234 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLK-ALIERVNISSPITAENLGYMIGPSINAGGRIG 312 PL+G NRA V GL R PGL+ + ++ +A + +++ P +NA GR+G Sbjct: 235 APLMGENRALVTAGLAQLARSRWPGLRAMMARTLSHGRAPSAREVAFVLAPRLNAAGRLG 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 E++LG LL + + LA LD N +RR ++ AML +A V +A +V Sbjct: 295 EADLGLELLTTASERRALELASYLDARNADRRKVQDAMLGEALKLV------DPEAPALV 348 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 +E WHPG++G++A++L E+F +P F I+ G GS RS G I + Sbjct: 349 LERPSWHPGVMGIVASKLLERFYKPVFIIAQ-----GKGSVRSTPG--ISAVGGLEYARD 401 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L + GGH+ AAG + + +A P D +L ++ L Sbjct: 402 LLERFGGHSQAAGFAIREGCVEAFRERVYDYARQHPTP---RPELVADTLLAPDEIDTDL 458 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 L + PYG G+P P FA L+ + + + ++ +A+ Sbjct: 459 YRALCTLEPYGEGHPAPRFALC-APLEGVGCMGEGGKHLNLRVGG---VRGVAWDRG--- 511 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + ++ L N W+G + +L D P Sbjct: 512 -ADAPALRAAGVINAAVTLRENTWQGKTQLELLADDVRPA 550 >gi|218515524|ref|ZP_03512364.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli 8C-3] Length = 434 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 245/434 (56%), Positives = 312/434 (71%), Gaps = 1/434 (0%) Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220 TS+DAL A + IDV+VIDHHQV E +ALVNPNR DDLSGQGHLCAAGVVF+VLV Sbjct: 1 TSHDALAAAAARDIDVVVIDHHQVTHELPRCHALVNPNREDDLSGQGHLCAAGVVFMVLV 60 Query: 221 LIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 R+LR L DLL LD+VALATVCDVVPL GLNRAYVVKGL+ AR Q N GL Sbjct: 61 ATLRLLRAAGNKRILAIDLLQWLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGL 120 Query: 280 KALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339 AL + +S P+T + G++IGP INAGGRIG++ LGSRLL DD+ E E++A +LD L Sbjct: 121 AALFRKAGLSGPVTPYHFGFLIGPRINAGGRIGDAALGSRLLTLDDAGEAEVIAQRLDEL 180 Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 N+ R+ ME+ ML++AEA+ L + D + ASVIV ++WHPGIVGL+AARLKEKF RP+F Sbjct: 181 NRERQAMEAMMLQEAEAEALAEYGDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAF 240 Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 AI+F+ G+G GSGRSI GFD+G+MV AV+EG+LVKGGGHAMAAGLTVER + GRL F Sbjct: 241 AIAFDPSGRGTGSGRSINGFDMGRMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTF 300 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 F + A V L+ KIDG + AS + LID LE+AGPYG+G+ P+FA P H+++ Sbjct: 301 FTEKAARTVANLVANETLKIDGAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVR 360 Query: 520 SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 R+V H+++T E+ D L IAFR T LG L+ SRG +HV G L ++++G+ Sbjct: 361 DARLVGEKHVKVTLEAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGA 420 Query: 580 KRCQLRVLDASPVE 593 +R Q+RV DA+P + Sbjct: 421 RRIQMRVCDAAPAK 434 >gi|229124050|ref|ZP_04253242.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus 95/8201] gi|228659352|gb|EEL15000.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus 95/8201] Length = 553 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 149/564 (26%), Positives = 240/564 (42%), Gaps = 40/564 (7%) Query: 18 WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 W L L + + I ++ L + + + FL P +P Sbjct: 3 WKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFH-NP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +A RI++AI E I IFGDYD DG S ++ + L + +P R Sbjct: 62 FLLNDMKRAVDRILKAIQQKESIYIFGDYDCDGITSSTILKQALEKLGAHVMTRLPLR-E 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG +P + + E L+ITVD GS+++ A++ A +GIDVIV DHH+V E Sbjct: 121 EGYGLSPYAV-NSLPENISLLITVDNGSSAHPAMKRAKEKGIDVIVTDHHEVLGEHPDCL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A +NP R D+ HLC AGV ++ ++ L+QD ++ + T+ D Sbjct: 180 AFINPKRRDNKYPYPHLCGAGVALKLIQALFMTLKQDWVKETWH----YIEYATIGTIAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 V+PL G NR GL R N L+ E++ + I + +G++IGP +N+ GRI Sbjct: 236 VMPLTGENRVICWYGLYKMRNCPNKLLQLFREQLQLK-YIDSTTIGFLIGPMLNSCGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N+G+ +L L LN R+L+ + + A + Q + ++ Sbjct: 295 DPNIGAAILQKAAPTTA--DVQLLINLNNKRKLLTTEQFKLAADIIEQQSLE---KDSLL 349 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H GI+G+LA+++ + RP+ ++ + G S RS G + + Sbjct: 350 VVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVG----SARSGNGSKFSIIQAIQSCSE 405 Query: 433 ILVKGGGHAMAAGLTV--ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L K GGHA AAGL++ E + + + Q+ A + P Sbjct: 406 LLKKFGGHAAAAGLSIASEESHIQKFRECMQEAAQQQNTS---QPTSYFISEFPIYNFPN 462 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L D L + P+G G+P P F N H++ F + R Sbjct: 463 HLFDDLMALEPFGNGHPKPSFRSKNIFACGHSCFGKNKEHVEFFFSKK----------RA 512 Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHL 571 Y G +R RM V Sbjct: 513 YAYSHGHLFQNWNRYNRMDVLYTP 536 >gi|94985699|ref|YP_605063.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus geothermalis DSM 11300] gi|94555980|gb|ABF45894.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus geothermalis DSM 11300] Length = 702 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 158/580 (27%), Positives = 253/580 (43%), Gaps = 48/580 (8%) Query: 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPD 71 S+ RW+ ++ + + +A+VL R ++ + L L P+ Sbjct: 7 SLPEARWLLAPPASRAALLESM-RLWGVAPPLAQVLHARGLTPAHLDAPLR-----LTPN 60 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 P + +AARRIV AI +I I GDYD DG ++ A ++ L + +IP R+ Sbjct: 61 PAL----REAARRIVGAIRAGRRIRIHGDYDADGVSATATLILGLREVGAEVHGFIPHRL 116 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +GYG +P +E+ L++TVDCG T+ + ++ +G+DVIV DHH + Sbjct: 117 NEGYGLHPDRVEEHAA-ACDLLVTVDCGVTNLEEVRALLARGLDVIVTDHHAPGPDYPDC 175 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + +L AGV + +L ++ L L L L L T+ Sbjct: 176 LVVHPHRTTGYDPELHNLTGAGVAYHLLWAVHEELGL-------PAPLELAGLATLGTIA 228 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 DV PLIG NRA V GL PG++AL+ + + ++ +++ P +NA GR+ Sbjct: 229 DVAPLIGENRALVRAGLDALATSTLPGVRALLNAKRVER-PSVRDVAFLLAPLVNAAGRL 287 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 GE++L +LL + E LA L+ NQ RR+++ M E+A + I Sbjct: 288 GEADLALQLLTTTSDHEARTLATYLESRNQERRVLQDRMYEEALGLA------DPEEPAI 341 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 VV WH G++G++A++L E F +P + ++ G GS RS G I + Sbjct: 342 VVTKPDWHAGVMGIVASKLVETFHKPVYIVAQ-----GKGSVRSTPG--ISAVEGLRYSH 394 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L + GGH AAG ++ NF L D + P++++D L A Sbjct: 395 DLLKRYGGHPGAAGFALDEANFEALRDRLHTYVRQFPRP---VPMWRLDAPLPTRAATPE 451 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGT 551 L+ + PYG G+P P++ L S R+V + F+ L+ I Sbjct: 452 LVRQAAAFEPYGTGHPPPLWHMREV-LSSTRLVGKRGDSLQFQIGG---LRGIQHGERDA 507 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 GE + HL WRG R +L P Sbjct: 508 VPGER---------DLATHLVRGEWRGQTRLELHGQALRP 538 >gi|257061378|ref|YP_003139266.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8802] gi|256591544|gb|ACV02431.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8802] Length = 776 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 144/606 (23%), Positives = 265/606 (43%), Gaps = 50/606 (8%) Query: 17 RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 +W L I +++ + + A++L R + D FL+ + P Sbjct: 7 QWQILPSLSVPLWFREIVKRYTPDSTGEYAAQLLWQRGIQDKDELLGFLDANAYH-PSSP 65 Query: 73 LIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIP 128 + +A R+ +A EK+ I+GD+D DG + +++ L + N YIP Sbjct: 66 FAFGQEMKRAVERLKKAYETKEKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNYYIP 125 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R+ + +G N +++ G QLI+T D GST+ + YA G+D+I+ DHH + + Sbjct: 126 NRLTESHGLNCQGIDQLATAGTQLIVTCDTGSTNLAEIDYANRLGLDIIITDHHTLPDDR 185 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 P A++NP + +L V + ++ Y + + P L +LLDLVA+ Sbjct: 186 PPVIAIINPRYFSNNYPLFNLSGVAVAYKLVQAFYETYPEIPQQP----LENLLDLVAIG 241 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQG----NPGLKALIERVNISSPITAENLGYMIGPS 304 + D+V L G R KG+ ++Q PG+ L+E S ++ Y IGP Sbjct: 242 LIADLVELRGDCRYLAQKGIEQLQKQRQFPTRPGIAKLLEYCKRSGD-RPTDISYGIGPR 300 Query: 305 INAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA R G++ LL S D + + LA++ ++ N R+ ++ +++ + K+ Sbjct: 301 INAISRIHGDATFAVELLTSRDQERCQQLALETELANTRRKALQQTVIKDVKKKLDQL-- 358 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--------GIGSGRS 415 D+ VIV++ +W G++GL+A ++ +++GRP+ ++ E K GS RS Sbjct: 359 DLSTTGVIVLDDPQWPNGVLGLVAGQIAQEYGRPTILLTTAETEKLGENGVKLARGSARS 418 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITT 474 + D+ ++VS ++ +L + GGH AAGL++ N + + V + + Sbjct: 419 VNQIDLYELVSS--QKYLLYRFGGHPFAAGLSLPLENLSIFKESINQKLRQTVHDISLLK 476 Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA- 527 + D V+ + + L L+ P G GN P N +I + Sbjct: 477 TTIEADLVVTVADLGQFLFRELKLLEPCGMGNRVPKLLIQNCWFDNIINYNSKDLRGDKI 536 Query: 528 -HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 +++ FE D ++ + + Y L + K L N + + Sbjct: 537 QYIRTKFEMYDEYSNQGFPGVWWGHYKEDLPQ------NKPQDAIVELDYNSYSKRYEVR 590 Query: 584 LR-VLD 588 L + D Sbjct: 591 LIAIRD 596 >gi|220906597|ref|YP_002481908.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7425] gi|219863208|gb|ACL43547.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 7425] Length = 813 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 138/586 (23%), Positives = 250/586 (42%), Gaps = 51/586 (8%) Query: 43 VARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 A++L R + D + FL+P P A R+ +A EK+ I+GD+ Sbjct: 39 TAQLLWQRGIRDRDQLQGFLDPDHYQ-PASPFQFAQMMLAVERLQRARQRGEKVAIWGDF 97 Query: 102 DVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D DG + A++ L + + IP+R+++ +G N + +++ G LI+T D Sbjct: 98 DADGITATAVLWEGLGNFFIQEEQLIYTIPNRLIESHGLNLAGIDRLKAAGCTLIVTCDT 157 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 GST+ ++YA + G+DVIV DHH + P AL+NP + HL V + + Sbjct: 158 GSTNQTEIEYANSLGMDVIVTDHHTLSPIPPPVVALINPREFEADHPLAHLSGVAVAYKL 217 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL----MVARRQ 274 + +Y L + P L LLDLVA+ + D+V L G R +G+ + Sbjct: 218 VEALYLTLPEVPLAP----LTDLLDLVAIGLIADLVQLRGDCRYLAQRGIAQLQKQLQNP 273 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLA 333 PG+ L+E + ++ + +GP INA R G+++ LL S + LA Sbjct: 274 TRPGVAKLLELCRKTGD-RPTDISFGLGPRINAVSRIQGDAHFCVELLTSWEVDRCNELA 332 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 ++ ++ N R+ ++ + Q ++ + D+ IV+ +W GI+GL+A ++ ++ Sbjct: 333 LETELANTRRKALQKETVTQVRRQL--ERLDLSTTRAIVLVDSQWPAGILGLVAGQIAQE 390 Query: 394 FGRPSFAISFEE----DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449 +G P+ + ++ DG+ + G + I FA ++ +L + GGH +AAGL++ Sbjct: 391 YGCPTVLLHADDLDDRDGQTLAKGSARSVQQIDLYALFAEQQHLLHRYGGHPLAAGLSLP 450 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV-------NIALIDMLESAGPY 502 N ID V+ + + L L+ PY Sbjct: 451 LANVPLFRQALNHKLGQYPHLETRAGSISIDLVVTVADLIGEGNRPGEDLFQALKLLEPY 510 Query: 503 GAGNPNPVFAFPNHKLQSI-----RVVNLAHLQ-----MTFESQDS-ETLQAIAFRVYGT 551 G GNP P N +++ + + L+ + + ++ + + Y Sbjct: 511 GMGNPAPRLMISNCWVENPWNQNLKDLQGNKLRYIKTEFRLRDETTDQSFPGVWWEHYRE 570 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYW----RG-SKRCQLRVLDASPV 592 L + R V L N + RG R ++R++ P Sbjct: 571 ELPQ-------GRADVVVELDFNSYANPRRGIQPRYEIRLIAVRPH 609 >gi|229163463|ref|ZP_04291414.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus R309803] gi|228620032|gb|EEK76907.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus R309803] Length = 555 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 145/567 (25%), Positives = 242/567 (42%), Gaps = 38/567 (6%) Query: 18 WVSLLGQEGIN----RALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDP 72 W L + R L ++++ + ++ L + ++ + FL P++ +P Sbjct: 5 WKQLNTPFEQHPFHGRILYLSRQVNLDPLLGYHLFLQGMTTEEQFSSFLYPNVSQFH-NP 63 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D +A +RI++AI+ E I IFGDYD DG S ++ + L +P R Sbjct: 64 FLLNDMKQAVQRILKAIHQKENIYIFGDYDCDGITSSTILKQALEKLGGRVQTRLPLR-E 122 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG +P + I E L+ITVD GS+S+ A+Q + +G+DVIV DHH+V + Sbjct: 123 EGYGLSPLAVNA-IPEHVSLLITVDNGSSSHSAIQRSKERGLDVIVTDHHEVLGKHPDCL 181 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A +NP R D+ HLC GV ++ ++ L+QD S ++ + T+ D Sbjct: 182 AFINPKRKDNTYPFEHLCGVGVALKLIQALFITLKQDWIKETW----SYIEYTTIGTIAD 237 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 V+PLIG NR GL R NP L L I + ++G++IGP +N+ GRI Sbjct: 238 VMPLIGENRVICWYGLQKMRTTPNP-LMRLFREHLQFKYIDSTSIGFLIGPMLNSCGRIS 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N+ + +L + + L LN R+ + S + A + Q + ++ Sbjct: 297 DPNIAAVILQKNAPTK--EDVQLLINLNNKRKQVTSEQFQLALKIIQQQSLE---RDHLL 351 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H GI+G++AA+L + +P+ ++ + G S RS G + + Sbjct: 352 VVQGDFHKGIIGIIAAKLSNHYKKPTIVLTQDGVG----SARSGNGSKFSIVRAIQFGSE 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +L K GGH AAGL++ + + ID + Sbjct: 408 LLKKYGGHEAAAGLSIVPTEKNIQQFRSHMQEAAKQQTNVKPVAYFID-EFPIYNFPDHV 466 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYG 550 + L + P+G G+P P F N H+Q F + R Y Sbjct: 467 FNDLIALEPFGNGHPKPTFRSHNVFSCGHSRFGKNKEHIQFFFSKK----------RAYA 516 Query: 551 TPLGEFLMQ-SRGKRMHVTGHLCVNYW 576 ++ RM V N + Sbjct: 517 YSHAHLFQNWNQNNRMDVLYTP--NSY 541 >gi|332708922|ref|ZP_08428893.1| single-stranded-DNA-specific exonuclease RecJ [Lyngbya majuscula 3L] gi|332352464|gb|EGJ32033.1| single-stranded-DNA-specific exonuclease RecJ [Lyngbya majuscula 3L] Length = 933 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 149/632 (23%), Positives = 273/632 (43%), Gaps = 67/632 (10%) Query: 14 SGFRWVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNVSID-YAKDFLNPSIRLLM 69 S +W L E + + H D A++L R + + FLNP + Sbjct: 2 SQSQWQVLAPPEIPQWFIEAVKSHTKGYSGDYAAQLLWQRGIREERQLAGFLNPDLYQ-P 60 Query: 70 PDPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANM 125 P + A +R++QA K+ I+GD+D DG + +++ L + Sbjct: 61 TSPFDFGQEMKWAVKRLLQAREAGAKVAIWGDFDADGITATSVLWEGLGQFFWQHQQLSY 120 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 YIP+R+ + +G N +++ G +LI+T D GST+ + YA G+DVI+ DHH + Sbjct: 121 YIPNRLTESHGLNCPGIDQLNASGVKLIVTCDTGSTNLREIDYAHQLGMDVIITDHHTLP 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 + P +++N + HL V + ++ +Y++L L LLDLV Sbjct: 181 DDRPPVVSMINSRYFAETHPLFHLSGVAVAYKLVEAMYQVLP----NIPQQRLEGLLDLV 236 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARR----QGNPGLKALIERVNISSPITAENLGYMI 301 A+ + D+V L G R +G+ ++ + PG+ L++ S ++ + + Sbjct: 237 AIGLIADLVELSGDCRYLAQRGIEQLKQQLKTRSRPGIARLLQLCKRSGD-RPTDISFGL 295 Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 GP INA R G+++ LL S D + E LA++ ++ N R ++ + +Q + K+ Sbjct: 296 GPRINAVSRIQGDASFCVELLTSKDEKRCEQLALETELANTRRMSLQKDITKQVKDKLAQ 355 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS------------------ 402 D+ +VIV+E +W G++GL+A ++ +++GRP+ +S Sbjct: 356 L--DLSTTNVIVLEDPQWPVGVLGLVAGQIAQEYGRPTILLSTVLLSTESSDRESKLVEA 413 Query: 403 ----FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 GS RS+ D+ ++V+ + +L + GGH AAGL++ N + Sbjct: 414 GLEDKHSYSIARGSARSVNNIDLYELVNS--QAHLLHRFGGHPFAAGLSLPVDNIPLFRE 471 Query: 459 FFQKFAHNIV--PALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516 + + + P + D V+ + + AL D L+ P G GNP P N Sbjct: 472 AINQQLAQKLGTTGALMMPAMEADLVVKVAELGKALFDELKHLEPCGMGNPVPKLLIKNC 531 Query: 517 KLQSI--------RVVNLAHLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRM 565 + + R + +++ FE D T I + Y + + R Sbjct: 532 WFEQVLNRNSKDLRGRKVQYIKTKFEIWDDSTSMGFPGIWWGHYQDEVPKV-------RC 584 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 + L N + KR ++R++ P + + F Sbjct: 585 NAVVELDYNNY--EKRPEVRLVAVQPCQENDF 614 >gi|15611390|ref|NP_223041.1| putative single-stranded-DNA-specific exonuclease RECJ [Helicobacter pylori J99] gi|4154859|gb|AAD05912.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ [Helicobacter pylori J99] Length = 516 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 140/510 (27%), Positives = 247/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFKSLNYKHVRVAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G +++A Q+ + +I+ DHH Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGCSLYERLKACNMKRKMIQQQVFEEAFRHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P T P LN Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFYETEPPLT----LNL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+R+ V + ++ Sbjct: 481 FNADRF-------LKAGERVSVLFSVELDE 503 >gi|307637035|gb|ADN79485.1| Single-stranded-DNA-specific exonuclease [Helicobacter pylori 908] gi|325995627|gb|ADZ51032.1| Single-stranded-DNA-specific exonuclease [Helicobacter pylori 2018] gi|325997223|gb|ADZ49431.1| Single-stranded-DNA-specific exonuclease [Helicobacter pylori 2017] Length = 516 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 137/510 (26%), Positives = 247/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFKSLNYKHVRVVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G +++A Q+ + +I+ DHH Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + AYA++NP + D Q +C A V F + I+++L+++ LL L Sbjct: 140 KIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLKKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNIKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGHA A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHAQACGLSVGKNNIVSLFETLENFDFKVLPFYEKEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDE 503 >gi|317010620|gb|ADU84367.1| single-stranded-DNA specific exonuclease [Helicobacter pylori SouthAfrica7] Length = 516 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 141/516 (27%), Positives = 253/516 (49%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ +I++ GDYD DG S +M +F + + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMEKRTEILVVGDYDADGVISSTIMAKFFASLNYKHVRVAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R DGYG + +EK A LIITVD G +++A Q+ + +I+ DHH ++ + Sbjct: 83 PNRFRDGYGISKQFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLQDD 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 IP YA++NP + D Q +C A V F + I+++L+++ LL LV Sbjct: 140 GIPDAYAVINPQQPDCHFIQKEVCGALVAFYLCYGIHQLLKKEKSHSS-----ELLCLVG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L + V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKEPLGAIGFLRQKEVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++ + + E+A + Sbjct: 255 NSAGRMQDARVALDFLNANNLQDCCFLYERLKACNNERKITQQQVFEEAFKHA------L 308 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +I+ D WH G++G++A++L E +PS +F+E G GSGRS + D+ + Sbjct: 309 VGEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GAYKGSGRSSQNVDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+VE+ N L + + F I+P P +L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVEKNNMVSLFETLENFDFKILPFCEEEPPL----ILRL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ RV+ +H + F+ ++ AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEERVIKESHQALRFKDKECIK-DAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ V + ++ + + Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDEYSNEPK 509 >gi|297538992|ref|YP_003674761.1| phosphoesterase RecJ domain-containing protein [Methylotenera sp. 301] gi|297258339|gb|ADI30184.1| phosphoesterase RecJ domain protein [Methylotenera sp. 301] Length = 591 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 148/594 (24%), Positives = 270/594 (45%), Gaps = 40/594 (6%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF--LNPSIRLLMPDPLILT 76 + + + + PD +A++L +R +D F L + + DP + Sbjct: 8 IFKFRESDDAVIATLIES-GSPDWLAKILSSR---LDKPMGFNSLYSNDLTDVEDPSAIP 63 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIV 132 D D A RIV+AI + EKI + D+D+DG S A++ L N+ R+ Sbjct: 64 DMDIAVSRIVRAINDEEKITLVCDHDMDGTGSAAVLWSALIDFFKVKDTLVNVVTSHRLT 123 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG + ++ I+ L+I+ D GS+ ++ GIDVIV DHH++ + P Sbjct: 124 EGYGITEPVAQRIIDLKPGLVISADKGSSDEPRIKKIAEAGIDVIVTDHHEIGANGPPKS 183 Query: 193 ALVNPNRL-DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+ N + D S H+C AGV FL + + L Q + LLD VA+AT+ Sbjct: 184 AIAVVNPIRVDSSYDKHVCGAGVAFLTMAKVRTALIQAGVRNHIPSIAPLLDYVAVATIA 243 Query: 252 DVVPLIG----LNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 D V + NR +V +GL + + P + ++ P+ AE +G+ + P++ A Sbjct: 244 DCVSMKPSKASTNRTFVKRGLQLINSKSRPCWEVFSS--DLQGPVDAETIGFRLAPAVAA 301 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 GR+ + +G + LIS +Q+ + ++L N R+ +E + E+A + + Sbjct: 302 AGRLDWAEIGFKFLISKTTQDAQKYWIELQHENALRKDIEKKLREKAIPEACKKLGQ--- 358 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-----------GSGRSI 416 IV+ + H G+ G+ A+RL E FG+P+ S + G GS R I Sbjct: 359 --SIVLFFEDGHSGVHGITASRLVEAFGKPAAIFSPKGAGVKNSTSRDEVKLASGSFRGI 416 Query: 417 EGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 GF++ + +S+ +L+ GGH A G ++ +F +++ + Sbjct: 417 PGFNVKEALSYVGDKYPELLLSHGGHVGAGGGSILIDSFDDFVIAYEEAVQAQIGDKELK 476 Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-HLQMTF 533 P +DG L + ++ L+ P+G P P F +++SI+ + HL+++ Sbjct: 477 PTIWVDGELPLGVNDFDVLSELDKLEPWGRDFPYPTFKGK-FEVRSIKKLGDGSHLKLSL 535 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + AI F + G+ ++ + G + L N++R +++ QL+++ Sbjct: 536 YDGLNSK-DAIWFNAVQS--GDEVLFTIGSNLSFVYSLKSNWYRNNRKIQLQII 586 >gi|109947517|ref|YP_664745.1| single-strand DNA-specific exonuclease [Helicobacter acinonychis str. Sheeba] gi|109714738|emb|CAJ99746.1| single-strand DNA-specific exonuclease [Helicobacter acinonychis str. Sheeba] Length = 516 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 137/516 (26%), Positives = 257/516 (49%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ +I++ GDYD DG S +M +F + + ++ I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMEKYTEILVVGDYDADGVISSTIMAKFFASLNYKHVHVAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK+ LIITVD G +++A ++ + +I+ DHH +++ Sbjct: 83 PNRFMDGYGISKQFLEKYHA---PLIITVDNGINAFEAARFCKEKNYTLIITDHHCLQNN 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L+++ LL LV Sbjct: 140 EVPDAYAVINPQQPDCHFIQKEVCGALVAFYLCYGIHQLLKKEKSHSS-----ELLCLVG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L + V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKEPLGAIGFLRQKEVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++ + + E+A + Sbjct: 255 NSAGRMQDARVALDFLSTNNLQDCCFLYERLKACNNERKITQQQVFEEAFKHA------L 308 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +I+ D WH G++G++A++L E +PS +F+E G GSGRS + D+ + Sbjct: 309 VGEKIIIALKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GAYKGSGRSSQNVDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+VE+ N L + + F ++P P +L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVEKNNMVSLFETLENFDFKVLPFCEKEPPL----ILRL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++S AI Sbjct: 422 KDIDKELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQALRFKDEESVK-DAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ V + ++ + + Sbjct: 481 FNAERF-------LKVGEKVSVLFSVELDEYSNEPK 509 >gi|308063207|gb|ADO05094.1| single-stranded-DNA specific exonuclease [Helicobacter pylori Sat464] Length = 516 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 136/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEATRFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI-ERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLCQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNILSLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|172037338|ref|YP_001803839.1| single-strand-DNA-specific exonuclease [Cyanothece sp. ATCC 51142] gi|171698792|gb|ACB51773.1| single-strand-DNA-specific exonuclease [Cyanothece sp. ATCC 51142] Length = 781 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 151/609 (24%), Positives = 272/609 (44%), Gaps = 52/609 (8%) Query: 17 RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 +W L L I + I A++L +R + + + + FL+ + + Sbjct: 7 QWEVLPIVSLPAWFLDIVNSYCTDSQGI--YAAQLLWHRGIQTPEELQGFLDANYYYPL- 63 Query: 71 DPLILT-DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126 P + A +R+ A+ N EK+ I+GD+D DG + +++ L + N Y Sbjct: 64 SPFEFGCEMKLATKRLEVAMNNQEKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNYY 123 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP+R + +G N ++K +EG +LI+T D GST+ + + YA + ID+IV DHH + + Sbjct: 124 IPNRATESHGLNIPGIKKLADEGTKLIVTCDTGSTNIEEINYANSLEIDIIVTDHHTLPN 183 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + +++NP + L V + ++ +Y + + P L +LLDLVA Sbjct: 184 DRPNVVSIINPRYFYEDHPLFSLSGVAVAYKLVEALYLSFPEIPESP----LENLLDLVA 239 Query: 247 LATVCDVVPLIGLNRAYV----VKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 + + D+V L G R K + PG+ L+ ++ + IG Sbjct: 240 IGLIADLVELKGDCRYLAQQGLKKLQQQLKNTTRPGVAHLLNLCKRGGD-RPTDISFGIG 298 Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 P INA R G+++ LL S D + + LA + ++ N R+ ++ + + E K+ Q Sbjct: 299 PRINAISRIQGDAHFAVELLTSKDEERCKELAFETELANTRRKSLQKDIKKNVEKKL--Q 356 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------IGSG 413 D+ VIV+E +W G++GL+A ++ +++GRP+ ++ E K GS Sbjct: 357 MLDLSTTQVIVLEDPQWQSGVLGLVAGQIAQEYGRPTILLTTAETEKMSESDLKLARGSA 416 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA-HNIVPALI 472 RS+ D+ K+V A + +L K GGH AAGL++ N + + I+ Sbjct: 417 RSVYNIDLYKLV--ASQRDLLHKFGGHPFAAGLSLPVENLSLFRENINRKLRQEIIDLNT 474 Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRVV 524 + + D V+ S + +L L+ PYG GNP P N ++ + Sbjct: 475 LSSTIQADLVVTVSQLGQSLFRELKLLEPYGMGNPVPRLLIQNCWFEALGNQNIRDAKNN 534 Query: 525 NLAHLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 + +++ F+ D+ I + E L Q + KR L N + G R Sbjct: 535 KIKYIKTKFDIYDNSVDEGFPGIWW----EHYQEELPQGKNKRCDAIVELDYNTY-GKGR 589 Query: 582 CQLRVLDAS 590 ++R+++ Sbjct: 590 YEVRLIEVR 598 >gi|218247287|ref|YP_002372658.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8801] gi|218167765|gb|ACK66502.1| single-stranded-DNA-specific exonuclease RecJ [Cyanothece sp. PCC 8801] Length = 776 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 144/606 (23%), Positives = 265/606 (43%), Gaps = 50/606 (8%) Query: 17 RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 +W L I +++ + + A++L R + D FL+ + P Sbjct: 7 QWQILPSLSVPLWFREIVKRYTPDSTGEYAAQLLWQRGIQDKDELLGFLDANAYH-PSSP 65 Query: 73 LIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIP 128 + +A R+ +A EK+ I+GD+D DG + +++ L + N YIP Sbjct: 66 FAFGQEMKRAVERLKKAYETKEKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNYYIP 125 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R+ + +G N +++ G QLI+T D GST+ + YA G+D+I+ DHH + + Sbjct: 126 NRLTESHGLNCQGIDQLATAGTQLIVTCDTGSTNLAEIDYANRLGLDIIITDHHTLPDDR 185 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 P A++NP + +L V + ++ Y + + P L +LLDLVA+ Sbjct: 186 PPVIAIINPRYFSNNHPLFNLSGVAVAYKLVQAFYETYPEIPQQP----LENLLDLVAIG 241 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQG----NPGLKALIERVNISSPITAENLGYMIGPS 304 + D+V L G R KG+ ++Q PG+ L+E S ++ Y IGP Sbjct: 242 LIADLVELRGDCRYLAQKGIEQLQKQRQFPTRPGIAKLLEYCKRSGD-RPTDISYGIGPR 300 Query: 305 INAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA R G++ LL S D + + LA++ ++ N R+ ++ +++ + K+ Sbjct: 301 INAISRIHGDATFAVELLTSRDQERCQQLALETELANTRRKALQQTVIKDVKKKLDQL-- 358 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--------GIGSGRS 415 D+ VIV++ +W G++GL+A ++ +++GRP+ ++ E K GS RS Sbjct: 359 DLSTTGVIVLDDPQWPNGVLGLVAGQIAQEYGRPTILLTTAETEKLGENGVKLARGSARS 418 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL-ITT 474 + D+ ++VS ++ +L + GGH AAGL++ N + + V + + Sbjct: 419 VNQIDLYELVSS--QKYLLYRFGGHPFAAGLSLPLENLSIFKESINQKLRQTVHDISLLK 476 Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA- 527 + D V+ + + L L+ P G GN P N +I + Sbjct: 477 TTIEADLVVTVADLGQFLFRELKLLEPCGMGNRVPKLLIQNCWFDNIINYNSKDLRGDKI 536 Query: 528 -HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 +++ FE D ++ + + Y L + K L N + + Sbjct: 537 QYIRTKFEMYDEYSNQGFPGVWWGHYKEDLPQ------NKPQDAIVELDYNSYSKRYEVR 590 Query: 584 LR-VLD 588 L + D Sbjct: 591 LIAIRD 596 >gi|167756848|ref|ZP_02428975.1| hypothetical protein CLORAM_02397 [Clostridium ramosum DSM 1402] gi|167703023|gb|EDS17602.1| hypothetical protein CLORAM_02397 [Clostridium ramosum DSM 1402] Length = 545 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 132/562 (23%), Positives = 243/562 (43%), Gaps = 38/562 (6%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 Q++ I ++A+V + S + L+ + + D + ++ + RI +AI N EK Sbjct: 16 QEYKINALLAKVFAYKQYSSQEIETMLSSRL--VYHDFSLFSEAEMTLERIHEAIGNKEK 73 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 I I+GDYD DG + ++++ V +IP R+ DGYG N + +E+ N+G LII Sbjct: 74 ICIYGDYDCDGILATSILVEAFRQLGVEVGYHIPSRLEDGYGLNANRVEQMANKGYTLII 133 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +Y+A++ A G+DVIV DHH E A+++++ D + V Sbjct: 134 TVDNGIKAYEAIEKANELGVDVIVTDHHNYDDELPDAFSIIHTKISPD-YPYKEISGGFV 192 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + + + + + L L A+ T+ D++PL+ NRA V + L + Sbjct: 193 AYKLASALLKKHDK-----------YLFSLAAITTISDMMPLLDENRALVKRALEFMKEN 241 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL----E 330 P L+ L + + + ++G++I P IN+ GR+ E + L+ S + Sbjct: 242 KYPQLELL---LGSNQTYSVTSIGFIIAPKINSFGRLSEIINPNHLVKYFRSDASIGILK 298 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ K +N R+ + + + + + + H GI+GL+A + Sbjct: 299 AVSEKAIEVNAKRQELTNKQYQSVLTMI------DPNEQFLYAYQNEIHEGIIGLVAGKY 352 Query: 391 KEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449 ++ RPSF ++F+ E GS R IEG + K+ + +L GGHA+A G +V Sbjct: 353 TRQYNRPSFVMTFDSEKNLYKGSARGIEGIPLNKIFENV--QDLLESYGGHALAGGFSVG 410 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 L + + + + + V I + + ++ + LE P G GN Sbjct: 411 SDKVEELKEKLELYLNKQLKDYTPPLVDVI--EVTGNEISKVSVKQLELLEPLGNGNEEM 468 Query: 510 VFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + + N H++ + QA+ F F K ++ Sbjct: 469 RFFIKDLPVSKVTSLSNGKHIRFDLSLPQVKA-QALFFNHGDF----FEQLKDTKMINAV 523 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 G +N + + L + D Sbjct: 524 GKFNINVFNNIESVNLIIEDIK 545 >gi|15607096|ref|NP_214478.1| single-strand-DNA-specific exonuclease RecJ [Aquifex aeolicus VF5] gi|2984349|gb|AAC07869.1| single-strand-DNA-specific exonuclease RecJ [Aquifex aeolicus VF5] Length = 538 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 141/585 (24%), Positives = 261/585 (44%), Gaps = 57/585 (9%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 + G RWV L ++ + +K+ I+A+++ NR + A FLNP + + P Sbjct: 2 KGVKGRRWVLLYREKEPPSF--LVEKYG--RILAQLITNRGYERE-ADKFLNPKLSHI-P 55 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 L ++A RI +A+ ++I+I+GDYDVDG A++ R L +P+R Sbjct: 56 TYRELEGIEEAIERIKEAVLKKKRIIIYGDYDVDGITGTAILYRVLKLLGAKVYPVLPNR 115 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 GYG N LM + +ITVD G+++ + + + ++ +VIDHH V Sbjct: 116 QT-GYGLNKELM-SIFEKYGDFLITVDNGTSAVEEIDQS---SLETVVIDHHNVPPRIPK 170 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 +VNP G L ++ + F + + R D + LDLVAL + Sbjct: 171 KALIVNPKVGAKREGLKALSSSALSFYLGSALIREFNLDEDP------RNFLDLVALGLL 224 Query: 251 CDVVPLIGLNRAYVVKGL----MVARRQGN-PGLKALIERVNISSPITAENLGYMIGPSI 305 D +P+ + R VKG+ +A+ + PG+KAL+E +++ +T+ ++ + + P I Sbjct: 225 ADYMPVNPVTRTLAVKGMYLLEKIAQGKVRKPGVKALLEISSVNGNVTSRDVYFSLAPRI 284 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GRI + LL+ +D + LA+KL+ +N+ R+ + + ++A+ K + + Sbjct: 285 NAAGRISKPKFALDLLLEEDERRARELALKLEEINRRRKAITNLTYKEAKKKAIEEI--- 341 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + +VV + WHPGI+G++A RL +F +P S GK G I Sbjct: 342 -DKNFLVVWDEEWHPGILGIVAGRLAGEFNKPVAVFS---KGKTKAVGSIRSIESIDVYD 397 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + + +K GGH A GLT+ + + + + + P +D ++ Sbjct: 398 KVSTMRDMFLKWGGHDKAMGLTLPSNRLEEFREKVNQIFEKVKESEVIIP---VDMEIDP 454 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 + ++S P+G GNP+P F ++ ++ + + +++ +S ++ Sbjct: 455 REFGEEDLRTIKSLEPFGEGNPHPTFMT---TVKDVK-LGEGY-KVSI---NSVEMEC-- 504 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + T L + L + + L G + D Sbjct: 505 ---WDTELLKHLKIGK----KILYRLD----GGK----FILEDVE 534 >gi|226355584|ref|YP_002785324.1| single-stranded-DNA-specific exonuclease [Deinococcus deserti VCD115] gi|226317574|gb|ACO45570.1| putative single-stranded-DNA-specific exonuclease RecJ [Deinococcus deserti VCD115] Length = 714 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 154/566 (27%), Positives = 255/566 (45%), Gaps = 48/566 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W+ + + +A+VL R ++ L+P + +L P+P + Sbjct: 11 WLLAPPASREALLETM-HTWRVSPPLAQVLYGRGLTP----ALLDPPL-VLTPNPAL--- 61 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +AA R+VQAI +++I I GDYD DG + A+++ L + + +IP R+ +GYG Sbjct: 62 -REAAHRLVQAIKANKRIRIHGDYDADGVTATAVLVLGLRALGADVHGFIPHRLNEGYGL 120 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 +P +E+ G +++TVDCG T+ D ++ G++V+V DHH + A + Sbjct: 121 HPDKIEEHAA-GCDVMVTVDCGVTNLDEVRGLVAMGVEVMVTDHHAPGPDFPDALVVHPH 179 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 +L AGV + +L ++++L L L L TV DV PLI Sbjct: 180 LTDHYQPDLHNLTGAGVAYHLLWAVHQVLGLSAP-------QELAALATLGTVADVAPLI 232 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G NRA V GL PGL+AL++ + + TA ++ +++ P INA GR+GE+++ Sbjct: 233 GENRALVRAGLQAMTSTDLPGLRALLDSGRV-ARPTARDVAFILAPRINAAGRMGEADVA 291 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 LL + + + LA L++ NQ RR ++ M +QA A +VV Sbjct: 292 LELLTTSSAHDARRLAEYLEIRNQERRKLQDVMFDQALAIA------DPSHPALVVTHPE 345 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 WH G++G++A++L E + +P F I+ G GS RS G I + +L + Sbjct: 346 WHAGVMGIVASKLLETYHKPVFIIAQ-----GKGSVRSTPG--ISAVDGLRYSADLLKRF 398 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGH AAG ++ D FA P P ++D L + L+ Sbjct: 399 GGHPGAAGFAIQEDRITAFQDRIHAFARQFPPPC---PQVRLDAPLPTLGATLDLLTEAA 455 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 + P+G G+ P++ + L R+V + F+ L+ I + GE Sbjct: 456 AFEPFGQGHAPPLWHVRDV-LTETRLVGKRSDSLQFKVG---PLRGIKYGERDATPGER- 510 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQ 583 + HL N WRG R + Sbjct: 511 --------DLATHLTANEWRGQTRLE 528 >gi|317013786|gb|ADU81222.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori Gambia94/24] Length = 516 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 138/510 (27%), Positives = 247/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFKSLNYRHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G +++A Q+ + +I+ DHH Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 KIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +I+ D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGHA A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHAQACGLSVGKNNIVSLFETLENFDFKVLPFYEKEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ R++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEERIIKESHQILRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+R+ V + ++ Sbjct: 481 FSAERF-------LKAGERVSVLFSVELDE 503 >gi|237734558|ref|ZP_04565039.1| single-stranded-DNA-specific exonuclease recJ [Mollicutes bacterium D7] gi|229382378|gb|EEO32469.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp. D7] Length = 550 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 132/562 (23%), Positives = 243/562 (43%), Gaps = 38/562 (6%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 Q++ I ++A+V + S + L+ + + D + ++ + RI +AI N EK Sbjct: 21 QEYKINALLAKVFAYKQYSSQEIETMLSSRL--VYHDFSLFSEAEMTLERIHEAIGNKEK 78 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 I I+GDYD DG + ++++ V +IP R+ DGYG N + +E+ N+G LII Sbjct: 79 ICIYGDYDCDGILATSILVEAFRQLGVEVGYHIPSRLEDGYGLNANRVEQMANKGYTLII 138 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +Y+A++ A G+DVIV DHH E A+++++ D + V Sbjct: 139 TVDNGIKAYEAIEKANELGVDVIVTDHHNYDDELPDAFSIIHTKISPD-YPYKEISGGFV 197 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + + + + + L L A+ T+ D++PL+ NRA V + L + Sbjct: 198 AYKLASALLKKHDK-----------YLFSLAAITTISDMMPLLDENRALVKRALEFMKEN 246 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL----E 330 P L+ L + + + ++G++I P IN+ GR+ E + L+ S + Sbjct: 247 KYPQLELL---LGSNQTYSVTSIGFIIAPKINSFGRLSEIINPNHLVKYFRSDASIGILK 303 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ K +N R+ + + + + + + H GI+GL+A + Sbjct: 304 AVSEKAIEVNAKRQELTNKQYQSVLTMI------DPNEQFLYAYQNEIHEGIIGLVAGKY 357 Query: 391 KEKFGRPSFAISFE-EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449 ++ RPSF ++F+ E GS R IEG + K+ + +L GGHA+A G +V Sbjct: 358 TRQYNRPSFVMTFDSEKNLYKGSARGIEGIPLNKIFENV--QDLLESYGGHALAGGFSVG 415 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 L + + + + + V I + + ++ + LE P G GN Sbjct: 416 SDKVEELKEKLELYLNKQLKDYTPPLVDVI--EVTGNEISKVSVKQLELLEPLGNGNEEM 473 Query: 510 VFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 F + + + + N H++ + QA+ F F K ++ Sbjct: 474 RFFIKDLPVSKVTSLSNGKHIRFDLSLPQVKA-QALFFNHGDL----FEQLKDTKMINAV 528 Query: 569 GHLCVNYWRGSKRCQLRVLDAS 590 G +N + + L + D Sbjct: 529 GKFNINVFNNIESVNLIIEDIK 550 >gi|332673191|gb|AEE70008.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori 83] Length = 516 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 249/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L +R + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVLRKHSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|22297718|ref|NP_680965.1| single-strand-DNA-specific exonuclease [Thermosynechococcus elongatus BP-1] gi|22293895|dbj|BAC07727.1| single-strand-DNA-specific exonuclease [Thermosynechococcus elongatus BP-1] Length = 747 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 145/602 (24%), Positives = 247/602 (41%), Gaps = 39/602 (6%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPD---IVARVLVNRNVSID--YAKDFLNPSIRLLMP 70 W + ++ P+ I A++L R FL+ Sbjct: 3 RPWQIYSADPAPPDFIEAVKQLH-PEAGAITAQLLWQRGYRDSLRQVPPFLDWRYYES-A 60 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS-HCSVN-ANMYIP 128 PL + A R+ QA+ EK++I+GD+D DG + A++ L + YIP Sbjct: 61 SPLEFPEMSAALGRLQQALDQQEKVVIWGDFDTDGVTATAVLWEGLKPLLGTQLVDFYIP 120 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R D +G +P +++ +G LIIT D GST+ + A G+DVIV DHH + Sbjct: 121 NRHHDSHGLSPHGLQQLQQKGVALIITCDTGSTNGPEIVLARQLGMDVIVTDHHTLDPTP 180 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 + A AL+NP +L HL GV + L +Y + + L +LLDLVA+ Sbjct: 181 LGAVALINPRQLPWDHPLRHLSGVGVAYKFLEAVYDRWPEK---TQGYPLENLLDLVAIG 237 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQG--NPGLKALIERVNISSPITAENLGYMIGPSIN 306 + D V L G R +GL ++ PG+ AL+ V+ E + + + P +N Sbjct: 238 LIADWVELRGECRYLAQRGLDQLGKRQTLRPGIAALLGHVSKHRAWQRE-ISFTVAPRLN 296 Query: 307 AGGRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 A R+ G+ LL + D E LA ++ LN R+ + + A AK D+ Sbjct: 297 AVSRVEGDVRPLITLLTTQDRHEARQLAERIATLNTERQRRQKEVTRMAHAKAAQL--DL 354 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKM 424 + VI++ D W ++GL+A + + +GRP+ + + E G +GS RS D+ + Sbjct: 355 SASRVILLTDDNWPLSLLGLVANDIVKTYGRPALLLQTNPETGMAVGSARSDGSVDLYEA 414 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP-VFKIDGVL 483 + +L GGH A G ++ + L +F TP ID + Sbjct: 415 FHS--QRHLLEGLGGHPYAVGFRLKMAHIPLLAAALNQFLAQQEGTASATPKPLVIDLEV 472 Query: 484 NASAVNIALIDMLESAGPY-GAGNPNPVFAFPNHKLQSIRV----VNLAHLQMTFESQDS 538 +N L+ LE P+ +P P N +L +R ++ M + Sbjct: 473 TLGQLNGQLLKELEVLAPFDSTHHPYPRLLVRNVELTQLRDNNSHGGRRYVSMVLHDRQH 532 Query: 539 E-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 + T A + +G+ + + + + W+ + + P E + Sbjct: 533 QHTFPAKWW---DHQIGDCPQGA----CDLV--IELEQWQ--SSLSAVIKELRPSETNVI 581 Query: 598 AK 599 + Sbjct: 582 QE 583 >gi|308182517|ref|YP_003926644.1| single-stranded-DNA specific exonuclease [Helicobacter pylori PeCan4] gi|308064702|gb|ADO06594.1| single-stranded-DNA specific exonuclease [Helicobacter pylori PeCan4] Length = 516 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 135/510 (26%), Positives = 247/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRVAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + AYA++NP + D Q +C A V F + I+++L+++ LL L Sbjct: 140 KIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLKKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVRKNNIVSLFETLENFDFKVLPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ + ++ Sbjct: 481 FNAERF-------LKAGEKVSAIFSVELDE 503 >gi|217033362|ref|ZP_03438793.1| hypothetical protein HP9810_9g115 [Helicobacter pylori 98-10] gi|216944303|gb|EEC23728.1| hypothetical protein HP9810_9g115 [Helicobacter pylori 98-10] Length = 516 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 136/516 (26%), Positives = 249/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L +R + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKCSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|300867576|ref|ZP_07112226.1| single-strand-DNA-specific exonuclease [Oscillatoria sp. PCC 6506] gi|300334464|emb|CBN57396.1| single-strand-DNA-specific exonuclease [Oscillatoria sp. PCC 6506] Length = 846 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 151/649 (23%), Positives = 263/649 (40%), Gaps = 93/649 (14%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDI----VARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 W + + HA P++ A +L++R + + + FLNP++ Sbjct: 6 QNWQIQPPIHPPTWLIEAVKSHA-PELPGHYAASLLMSRGIQNPEQIAGFLNPNLYQ-PA 63 Query: 71 DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126 P + + A R++QA N+E I I+GD+D DG S +++ L + Y Sbjct: 64 SPFEFGQEMNLAVERVLQARNNAENIAIWGDFDADGITSTSVLWDGLGQFFSQNEQLTYY 123 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP+R+ + +G N ++ G LIIT D GST+ + YA + GID+IV DHH + Sbjct: 124 IPNRLTESHGLNNPGIDALAKSGITLIITCDTGSTNLAEIDYARSLGIDIIVTDHHTLPE 183 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E A++NP L HL V + ++ +Y+ L + P L LL LVA Sbjct: 184 ERPQVVAIINPRYLPSTHQLFHLSGVAVAYKLIEALYQSLPNVPQRP----LEDLLVLVA 239 Query: 247 LATVCDVVPLIGLNRAYVVKGL----MVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 + + D+V L G R KG+ PG+ L+E S ++ + +G Sbjct: 240 IGLIADLVQLTGDCRYLAQKGIECLGKQITNSTRPGITKLLELCKRSGD-RPTDISFGLG 298 Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 P INA R G+++ LL S D + + LA+ ++ N R+ ++ + + K+ Sbjct: 299 PRINAVSRIQGDASFCVELLTSQDRKRCDQLALSTELANTRRKSIQKDVAKDVNEKLAKL 358 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG------------ 409 D+ SVIV+ +W G++GL+A ++ +++GRP+ +S E G+ Sbjct: 359 --DLSTTSVIVLADSQWPVGVLGLVAGQVAQEYGRPTILLSTEGAGEMGSGGAGEQGRWG 416 Query: 410 ------------------------------------IGSGRSIEGFDIGKMVSFAVEEGI 433 GS RS+ D+ ++V + + Sbjct: 417 AGEMGSGGDGEQLPITNYQLPITNYQLPITNYPILARGSARSVSQIDLYQLVKS--QAHL 474 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 L + GGH AAGL++ N D + + + +P + D ++ S + L Sbjct: 475 LHRFGGHPFAAGLSLPVENISLFTDAINQQLRGQMVNGLPSPTIQADLIVTVSELGRELF 534 Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQ-----SIRVVNLAHLQ-----MTFESQDSET-LQ 542 L+ P G GNP P N + + + + +Q + S+ Sbjct: 535 QELKLLEPCGMGNPAPKLLIQNCWFENTWHCNQKDLRGNKVQYIKTDFEIRDESSDRAFP 594 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 I + Y + L N + KR ++R++ P Sbjct: 595 GIWWGHYKDEIP-------TGPCDAIVELDFNTY--KKRYEVRLIALRP 634 >gi|254779039|ref|YP_003057144.1| Single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori B38] gi|254000950|emb|CAX28894.1| Single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori B38] Length = 516 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 249/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH + ++ Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAIINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEEEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQILRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDE 503 >gi|317062616|ref|ZP_07927101.1| LOW QUALITY PROTEIN: single-stranded-DNA-specific exonuclease recJ [Fusobacterium ulcerans ATCC 49185] gi|313688292|gb|EFS25127.1| LOW QUALITY PROTEIN: single-stranded-DNA-specific exonuclease recJ [Fusobacterium ulcerans ATCC 49185] Length = 502 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 140/504 (27%), Positives = 252/504 (50%), Gaps = 18/504 (3%) Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149 EK+ I+GDYDVDG + ++ + + + YIP+R+ +GYG + ++ E Sbjct: 3 RKKEKVFIYGDYDVDGITAAVFLVLVFRNIGIEVDYYIPNRMEEGYGLDKKTIDFINKEK 62 Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209 +L+ITVD G S + ++YA + GIDVIV DHH+ EE + L+ +L D +L Sbjct: 63 GKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEEDDHLLLLNPKLSDTYEFKYL 122 Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 AGV V +Y+ L+ D DL +D+V + TV DVVP+ NR + +GL Sbjct: 123 SGAGVALKVAQGVYQKLKID-----IKDLHQYMDIVMIGTVADVVPMTDENRIIIKQGLR 177 Query: 270 VARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 ++ GL L++ + + I ++ Y I P IN+ GR+G S +G+ + +D E Sbjct: 178 ALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLGRVGISKMGADFFLKEDDFE 237 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 + + ++ N+ RR +E + ++A ++ ++ I + ++WHPG++G++++ Sbjct: 238 IYNIIEEMKKSNKKRRELEKNIYDEANQEIAK--VGLKNLKCIFLSSEKWHPGVIGVVSS 295 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448 RL K+ P ++F++ G G S RS++G I F LV+ GGH +AAG V Sbjct: 296 RLSVKYNIPVTLVAFKD-GIGKASCRSVKG--ISVFNIFQNMGKKLVRFGGHDLAAGFIV 352 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 + NF + + F+ N + KID + ++ + + +ES PYG NP+ Sbjct: 353 KSENFEEVKNIFEASIEN-IKIEKEKKSLKIDTEYSIENIDEDMFETMESISPYGLENPH 411 Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + ++I+ H ++ + +AF + G + E +++ ++ Sbjct: 412 PLFIDRDLSFETIKKFGVDERHFNGIIR-KNGKNYHMVAFDL-GHKINEI--EAKIQKFD 467 Query: 567 VTGHLCVNYWRGSKRCQLRVLDAS 590 + + +RG + Q+RV D Sbjct: 468 IVYYPEKTLYRGEEIFQIRVKDIK 491 >gi|308061696|gb|ADO03584.1| single-stranded-DNA specific exonuclease [Helicobacter pylori Cuz20] Length = 516 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNIKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L + +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVKATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNILSLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|261839195|gb|ACX98960.1| single-stranded DNA-specific exonuclease [Helicobacter pylori 52] Length = 516 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKIALDFLSANNFQDGYFLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|317177159|dbj|BAJ54948.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F16] Length = 516 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 246/516 (47%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQIFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ + +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKKCVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|308184145|ref|YP_003928278.1| single-stranded-DNA specific exonuclease [Helicobacter pylori SJM180] gi|308060065|gb|ADO01961.1| single-stranded-DNA specific exonuclease [Helicobacter pylori SJM180] Length = 516 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 138/510 (27%), Positives = 249/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G +++A Q+ + +I+ DHH + ++ Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGINAFEAAQFCKEKNYTLIITDHHCLNND 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 EIP YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSRSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEKEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQVQNLEVIEEKIIKESHQILRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FNADRF-------LKAGEKVSVLFSVELDE 503 >gi|298736715|ref|YP_003729245.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori B8] gi|298355909|emb|CBI66781.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori B8] Length = 516 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++ ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEVARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LAL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|317179259|dbj|BAJ57047.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F30] Length = 516 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A++ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKTLYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMERKMIQQQVFEEAFKHAMI----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH ++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHESVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|116751289|ref|YP_847976.1| phosphoesterase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116700353|gb|ABK19541.1| phosphoesterase, RecJ domain protein [Syntrophobacter fumaroxidans MPOB] Length = 553 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 165/564 (29%), Positives = 264/564 (46%), Gaps = 36/564 (6%) Query: 41 DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 D+V +L NR FL+ +++ L L + D A + + + +I++ GD Sbjct: 19 DVVRILLANRG----AGPAFLDGTLKELETC-LAIRGMDAGAELMAEHLAAGTRIVLVGD 73 Query: 101 YDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 YD DG S+A + FL N +P R +GYG + + A L + +DCG Sbjct: 74 YDCDGITSLAQVSLFLREIGYGNFETVVPRR-SEGYGIPERAILDHPD--AGLYVAMDCG 130 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEE-IPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 + A+ A +G D IVIDHH+V + PA L+NP + S C++G+ L Sbjct: 131 TLDRKAVGMARERGADCIVIDHHEVPDQGLAPATVLINPKHSECESTFKEFCSSGLTLLF 190 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278 L + R LR P L L A+ATV D+VPL+ NR V GL A + P Sbjct: 191 LARLRRALRG---FPKPALGGRFLILAAIATVADMVPLVEGNRILVRSGLNCANQVDYPP 247 Query: 279 LKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 L L+++ +S ITA +LGY IGP INA GR+ ++ LL+ DD LA +L+ Sbjct: 248 LDQLVQKAGLSGKSITAGHLGYYIGPRINAAGRMADARTAYELLVEDDPSAAARLAEQLN 307 Query: 338 VLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR- 396 N R+ E A++ + ++ + +V+ W GI+G++A+R++++F Sbjct: 308 RYNTQRQNQEDAVVGEIRQRLADRKVFG---RTLVMADAGWPAGIIGIVASRVQQEFHYG 364 Query: 397 PSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGR 455 P S +E +G GS RSI GFDI ++ + ++++ GGH MAAG+T+ Sbjct: 365 PVVVFSVDEAEGIARGSARSIPGFDIHSALASC--DDVMLRWGGHKMAAGMTIALDRMDE 422 Query: 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPN 515 F++ A + PA + P ++D L+ +++ L L P+G GNP P FA Sbjct: 423 FAHRFEESALHW-PAHVFQPRGRVDAELDTGLISVDLYRELTKLEPHGLGNPTPTFASRG 481 Query: 516 HKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 ++Q + HL++ + + + + +R L G+ M V L Sbjct: 482 VRVQVKKTFGRDASHLRLQLD----QRIGGVFWRGARHFRSAGLRD--GETMDVVYQLDW 535 Query: 574 NYWRGSKRCQLRVLDASPVEGHHF 597 + + G Q V DA G F Sbjct: 536 DDYAGRPVMQ--VRDA----GRLF 553 >gi|320450564|ref|YP_004202660.1| single-stranded-DNA-specific exonuclease RecJ [Thermus scotoductus SA-01] gi|320150733|gb|ADW22111.1| single-stranded-DNA-specific exonuclease RecJ [Thermus scotoductus SA-01] Length = 672 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 153/577 (26%), Positives = 252/577 (43%), Gaps = 55/577 (9%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW L + + + A +R V L PS+ L+P L Sbjct: 6 RWRLLPLPPLKEW-REVMEAFGVGPEAALAYWHRGVRRPED---LKPSL-GLLP----LR 56 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +A ++ A+ ++I I GDYD DG A+++R L + +IP R+ +GYG Sbjct: 57 GLKEAVELLLWALEGRKRIRIHGDYDADGLTGTAILVRGLRALGAEVHPFIPHRLEEGYG 116 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 +P + + + A L +TVDCG ++ L+ G++V+V DHH + P L Sbjct: 117 VHPKRIPEHLE-AADLFLTVDCGIANHAELRELVENGVEVLVTDHHTPRDTPPPGVILHP 175 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 D + H AGV FL+L ++ L L DL A+ T+ DV PL Sbjct: 176 AYTPD---LKEHPTGAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPL 225 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 G NRA V +GL + GL+ L E V + + + I P INA R+GE+ Sbjct: 226 WGWNRALVREGLERLKDSRLLGLRLLAESVGYTGKAVE--VAFRIAPRINAASRLGEAEK 283 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 RLL+++D +E + L +L+ LN R+ +E ML++ + +A IV+ Sbjct: 284 ALRLLLTEDEEEAKGLVEELNRLNARRQAIEEEMLKRLLPQA------DPEAKAIVLHDP 337 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 HPG++G++A+R+ E RP F ++ G G+ RS+ I + + E +L++ Sbjct: 338 EGHPGVMGIVASRILEATLRPVFIVAQ-----GKGTVRSLP--PISAVEALRSAEDLLLR 390 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN--IALID 494 GGH AAG V+ +F R + + FA + + P+ G+L + L Sbjct: 391 YGGHREAAGFAVDEAHFPRFKERVEAFAASFPDPVREVPLV---GLLPP--LTSLPELHQ 445 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPL 553 L + P+G GNP P+F + R + HL + ++ +A+R+ Sbjct: 446 ALLALEPFGEGNPEPLFLLQG-SPEEARSMGEGKHLAFRLQG-----VRVVAWRMGER-- 497 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + L N W G+ + + LD Sbjct: 498 ----AAAMPSELEAAVLLVENRWNGTVSYEAQALDFR 530 >gi|42783656|ref|NP_980903.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 10987] gi|218905702|ref|YP_002453536.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH820] gi|42739585|gb|AAS43511.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 10987] gi|218537915|gb|ACK90313.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH820] Length = 553 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 149/564 (26%), Positives = 236/564 (41%), Gaps = 40/564 (7%) Query: 18 WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 W L L + + I ++ L + + + FL P +P Sbjct: 3 WKQLDIPFENHPHCANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFH-NP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D ++A RI++AI E I IFGDYD DG S ++ + L + +P R Sbjct: 62 FLLNDMNRAVDRILKAIQQREIIYIFGDYDCDGITSSTILKQALEKLGAHVISCLPLR-E 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYG P ++ + + L+ITVD GS+++ A++ A +GIDVIV DHH+V E Sbjct: 121 DGYGLTPLAVDA-LPQNVSLLITVDNGSSAHPAMKRAKEKGIDVIVTDHHEVLGEHPSCL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A VNP R D+ HLC AGV ++ ++ L+QD + ++ + T+ D Sbjct: 180 AFVNPKRKDNTYPYPHLCGAGVALKLIQALFMTLKQDWIKETW----NYIEYATIGTIAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 V+PL G NRA GL R N L L I + N+G++IGP +N+ GRI Sbjct: 236 VMPLTGENRAICWFGLYKMRNCPN-KLFQLFREQLQLKYIDSTNIGFLIGPMLNSCGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N+G+ +L L LN R+ + + + A + Q + ++ Sbjct: 295 DPNIGAAILQKATPT--AEDVQLLMNLNNKRKQLTNKQFKLAAEIIEQQSLE---KDSLL 349 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H GI+G+LA+++ + RP+ ++ + G S RS G + + Sbjct: 350 VVQGDFHKGIIGILASKISSHYKRPTIVLTQDGVG----SARSGNGSKFSIIQAIQSCSE 405 Query: 433 ILVKGGGHAMAAG--LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L K GGH AAG + E + + + Q+ A + P Sbjct: 406 LLKKFGGHDAAAGLSIAPEESHIQQFRECMQEAAQQQNTS---QPTSYFISEFPIYNFPN 462 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L D L + PYG G+P P F N H++ F + R Sbjct: 463 HLFDDLMALEPYGNGHPKPSFRSKNIFACGHSCFGKNKEHVEFFFSKK----------RA 512 Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHL 571 + G +R RM V Sbjct: 513 FAYSHGHLFQNWNRYNRMDVLYTP 536 >gi|210134540|ref|YP_002300979.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori P12] gi|210132508|gb|ACJ07499.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori P12] Length = 516 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 251/510 (49%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH + ++ Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSRSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +I+ D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FNAERF-------LKAGEKVSVLFSVELDE 503 >gi|126658353|ref|ZP_01729502.1| RecJ exonuclease [Cyanothece sp. CCY0110] gi|126620285|gb|EAZ91005.1| RecJ exonuclease [Cyanothece sp. CCY0110] Length = 780 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 146/577 (25%), Positives = 260/577 (45%), Gaps = 45/577 (7%) Query: 44 ARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT-DCDKAARRIVQAIYNSEKIMIFGDY 101 A++L +R + + + K FL+P+ + P + A +R+ A+ N E++ I+GD+ Sbjct: 37 AQLLWHRGIQTPEQLKGFLDPNSYRPL-SPFEFGYEMKLATQRLEVAMNNQERVTIWGDF 95 Query: 102 DVDGAASVALMMRFLSHC---SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D DG + +++ L + N YIP+R + +G N + K EG +LI+T D Sbjct: 96 DADGVTATSVLWEGLGQFFDPHLQLNYYIPNRATESHGLNIPGINKLAQEGTKLIVTCDT 155 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 GST+ + + YA + GID+IV DHH + E +++NP + L V + + Sbjct: 156 GSTNLEEINYANSLGIDIIVTDHHTLPDERPDVVSIINPRYFSEDHPLFSLSGVAVAYKL 215 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV----VKGLMVARRQ 274 + +Y + + P L +LLDLVA+ + D+V L G R K + Sbjct: 216 VEALYLSFPEIPESP----LENLLDLVAIGLIADLVELKGDCRYLAQQGLKKLQQQLKNT 271 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLA 333 PG+ L+ ++ + IGP INA R G+++ LL S D + LA Sbjct: 272 TRPGIAHLLNLCKRGGD-RPTDISFGIGPRINAISRIQGDAHFAVELLTSKDEKRCYKLA 330 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 ++ ++ N R+ ++ + + E K+ Q D+ VIV+E +W G++GL+A ++ ++ Sbjct: 331 LETELANTRRKSLQKDIKKDVEKKL--QMLDLSTTQVIVLEDSQWQSGVLGLVAGQIAQE 388 Query: 394 FGRPSFAISFEEDGKG--------IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG 445 +GRP+ ++ E GS RS+ D+ +V A + +L K GGH AAG Sbjct: 389 YGRPTILLTTAETENMSKNEIKLARGSARSVYNIDLYNLV--ASQRDLLYKFGGHPFAAG 446 Query: 446 LTVERVNFGRLCDFFQKFA-HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 L++ N + + ++ + + D V+ S + +L L+ PYG Sbjct: 447 LSLAVENLSLFRESINRKLRQEVIDVNTLSATIQADLVVTVSQLGQSLFRELKLLEPYGM 506 Query: 505 GNPNPVFAFPNH--------KLQSIRVVNLAHLQMTFESQDSET---LQAIAFRVYGTPL 553 GNP P N ++ + + +++ F D I + Sbjct: 507 GNPVPRLLIQNCWFETLGNQNIRDAKNNKIKYIKTKFNIYDHSVDEGFPGIWW----EHY 562 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 E L Q + KR L N + G R ++R+++ Sbjct: 563 QEELPQGKDKRCDAIVELDYNTY-GKGRYEVRLIEIR 598 >gi|108562768|ref|YP_627084.1| single-stranded-DNA specific exonuclease [Helicobacter pylori HPAG1] gi|107836541|gb|ABF84410.1| single-stranded-DNA specific exonuclease [Helicobacter pylori HPAG1] Length = 516 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 250/510 (49%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH + ++ Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 ++V D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIVVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P T P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCKTEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FNTERF-------LKAGEKVSVIFSVELDE 503 >gi|317181688|dbj|BAJ59472.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F57] Length = 516 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 248/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSITPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GRI ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRIQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L + +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVDATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|317180757|dbj|BAJ58543.1| single-stranded-DNA specific exonuclease [Helicobacter pylori F32] Length = 516 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 134/516 (25%), Positives = 248/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLEKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLNANNFQDGYFLYERLKACNMKRKMIQQQVFEEAFKHAIV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV + WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|208434291|ref|YP_002265957.1| single-stranded-DNA specific exonuclease [Helicobacter pylori G27] gi|208432220|gb|ACI27091.1| single-stranded-DNA specific exonuclease [Helicobacter pylori G27] Length = 516 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 250/510 (49%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH + ++ Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +I+ D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFYEKEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ R++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEERIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FNTERF-------LKAGEKVSVLFSVELDE 503 >gi|254672377|emb|CBA05632.1| single-stranded-DNA-specific exonuclease RecJ [Neisseria meningitidis alpha275] Length = 481 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 148/449 (32%), Positives = 225/449 (50%), Gaps = 14/449 (3%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ +R V + L+ + L+P LT+C+ AA R+ A+ EKI+I Sbjct: 22 GADPLIARLCASRGV---QSPAELDDKLAALLPY-QTLTNCEAAAGRLADAVERQEKILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 DYD DGA + ++ M L+ + +P+R GYG P L E +G L+ITVD Sbjct: 78 VADYDADGATACSVGMSGLAAMGAKVDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 G S + A G+DVIV DHH + +E +P +VNPN+ L GV+F Sbjct: 138 NGIASIAGVARAQELGLDVIVTDHH-LPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFY 196 Query: 218 VLVLIYRILRQDNKVP---LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 VL+ + LR+ N +L LLDLVAL TV DVV L NR V +GL R Sbjct: 197 VLMALRAELRRRNYFSDGLKEPNLGDLLDLVALGTVADVVSLDHNNRILVSQGLKRMRSG 256 Query: 275 G-NPGLKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 PG++AL E ++G+ +GP INA GR+ + ++G L++ D E + L Sbjct: 257 KMRPGIRALFEVARRDWRKAQPFDMGFALGPRINAAGRLDDMSVGIACLLARDDTEAQEL 316 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A +L+ LN RR +E +ML+ A Q +V D +H G+VG++A+RLK+ Sbjct: 317 AAQLNNLNIERREIEQSMLQDALNAFPETLPSGQ--MTLVAYRDDFHQGVVGIVASRLKD 374 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVER 450 +F RP+ + ++G+ GSGRSI + + +++K GGHAMAAGL++ Sbjct: 375 RFYRPTIVFAPADNGEVRGSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILE 434 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKI 479 N F++ +V + Sbjct: 435 HNIPAFQTAFEEAVREMVCEDDLSQNLHH 463 >gi|317012186|gb|ADU82794.1| single-stranded-DNA specific exonuclease [Helicobacter pylori Lithuania75] Length = 516 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 134/510 (26%), Positives = 248/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIII 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH + ++ Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNND 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAIINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKTLYFLQKESLGAIGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +I+ D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSPNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEKEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ + ++ Sbjct: 481 FNADRF-------LKAGEKVSAIFSVELDE 503 >gi|298491533|ref|YP_003721710.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae' 0708] gi|298233451|gb|ADI64587.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae' 0708] Length = 767 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 152/607 (25%), Positives = 262/607 (43%), Gaps = 53/607 (8%) Query: 17 RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 +W+ ++ + +++ I A++L R + + F+N Sbjct: 2 QWILAETEQPPKSFIEAVKQYTPLSSGI--FAAQLLWQRGIKDTEELATFVNFQAYQPAS 59 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYI 127 + T+ + A +R+ A +EK+ I+GD+D DG S A++ L + YI Sbjct: 60 LFELETEMNLATQRLKNAGEANEKVAIWGDFDADGITSTAVLWDGLGQFFIQHQQLIYYI 119 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R+ + +G N + ++ +G +LI+T D GST+ D + YA GIDVIV DHH + SE Sbjct: 120 PNRLTESHGLNLAGIDNLAKQGCRLIVTCDTGSTNIDEIIYAQQLGIDVIVTDHHTLPSE 179 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 P A++NP L HL V + ++ +Y+ L + P L LLDLVA+ Sbjct: 180 RPPVVAIINPRYLPKEHPLFHLSGVAVAYKLVEALYKTLPDVPENP----LTDLLDLVAV 235 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGY 299 + D+V L G R G+ + + PG+ L+E S ++ + Sbjct: 236 GLIADLVQLSGDCRYLAQLGIQQLQGDYKKPVAERRRPGVGKLLELC-QKSGDRPTDISF 294 Query: 300 MIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +GP INA R G++ LL S D + LA + ++ N R+ ++ + Q KV Sbjct: 295 GLGPRINAVSRIHGDARFCVELLTSQDIKRCHQLAEETELANTRRKSLQKDVQNQVLQKV 354 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE----EDGKGIGSGR 414 D+ SVIV+E +W G++GL+A ++ ++ GRP+ +S E E GS R Sbjct: 355 SQL--DLSTTSVIVLEDPQWAVGVLGLVAGQVAQETGRPTILLSTESGESEPIFARGSAR 412 Query: 415 SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 SI D+ ++V + +L + GGH AAGL++ N D + + + T Sbjct: 413 SINSVDLYQLVKE--QAHLLHRFGGHPFAAGLSLLVENIPLFTDAINQKLRQSLRGIDLT 470 Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ------SIRVVNLA- 527 P + D V+ + + L L+ P G GNP P N + + Sbjct: 471 PTVQADVVVTVADLGKNLFLELKILEPCGMGNPIPKLLIKNCWFENSWHRNQQDLHGKKI 530 Query: 528 -HLQMTF---ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 +++ F + + I + Y L R + N + K + Sbjct: 531 QYIKTEFDIRDDSSKNSFPGIWWGHYKEELPM-------GRCDCIAEIDYNSF--KKGYE 581 Query: 584 LRVLDAS 590 +R++ Sbjct: 582 IRLIAVR 588 >gi|261837782|gb|ACX97548.1| single-stranded-DNA-specific exonuclease [Helicobacter pylori 51] Length = 516 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 133/516 (25%), Positives = 248/516 (48%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L +V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAIGFLRQRKVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV + WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKMLPFCEKESPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|188527153|ref|YP_001909840.1| single-stranded-DNA specific exonuclease [Helicobacter pylori Shi470] gi|188143393|gb|ACD47810.1| single-stranded-DNA specific exonuclease [Helicobacter pylori Shi470] Length = 516 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 246/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEATRFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDRECIK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G++++ + ++ Sbjct: 481 FNTERF-------LKAGEKVNAIFSVELDE 503 >gi|229198626|ref|ZP_04325328.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus m1293] gi|228584908|gb|EEK43024.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus m1293] Length = 553 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 147/564 (26%), Positives = 241/564 (42%), Gaps = 40/564 (7%) Query: 18 WVSL----LGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 W L L + + I ++ L + + + FL P DP Sbjct: 3 WKQLDIPFENHPHCKNMLYLAKHVNIHPLLGYHLFLHGIQTEEQLWSFLYPDPSQFH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D A RI+++I E I +FGDYD DG S ++ + L + +P R Sbjct: 62 FLLNDMKHAVERILKSIQQKELIYVFGDYDCDGITSSTILKQALEKLGAHVMTRLPLR-E 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG +P ++ + E L+ITVD GS+++ A+Q A +GIDVIV DHH+V E Sbjct: 121 EGYGLSPYAVD-CLPENVALLITVDNGSSAHSAIQRAKEKGIDVIVTDHHEVLGEHPTCL 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A +NP R D+ +LC AGV ++ ++ L+QD + ++ + T+ D Sbjct: 180 AFINPKRKDNTYPYTNLCGAGVALKLIQALFMTLKQDWVKETW----NYIEYATIGTIAD 235 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 V+PL G NR GL R NP +K +E++ + I + +G++IGP +N+ GRI Sbjct: 236 VMPLTGENRVLCWYGLYKMRNCPNPLIKLFLEQLQLK-HIDSTTIGFLIGPMLNSCGRIS 294 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N+G +L + L LN R+ + + + A + Q + ++ Sbjct: 295 DPNIGGAILQKVEPTT--EDIQLLMNLNNKRKQLTNEQFQMASEIIQQQSLE---KDSLL 349 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 V +H GI+G+LA+++ + +P+ ++ + G S RS G + + Sbjct: 350 VVQGNFHKGIIGILASKISSHYKKPTIVLTQDGVG----SARSGNGSKFSIIQAIQSCSE 405 Query: 433 ILVKGGGHAMAAG--LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 +L K GGHA AAG + E + R Q+ A + PV L Sbjct: 406 LLKKFGGHAAAAGLSIVPEESHIQRFRGHIQEVAKQQTNS---KPVSYFMSELPIYNFPS 462 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRV 548 L D L + P+G G+P P F N H++ F + + Sbjct: 463 HLFDDLMALEPFGNGHPKPAFRSQNVFACGHSYFGKNNEHVEFFFSKK----------KA 512 Query: 549 YGTPLGEFLMQ-SRGKRMHVTGHL 571 Y G +R RM + Sbjct: 513 YAYSHGHLFQNWNRYNRMDILYTP 536 >gi|317008987|gb|ADU79567.1| single-stranded-DNA specific exonuclease [Helicobacter pylori India7] Length = 516 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 136/516 (26%), Positives = 253/516 (49%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A++ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH + Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHG 139 Query: 188 EIPA-YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E+P YA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L + + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREIFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F ++P T P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCKTEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIETGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ V + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSVLFSVELDEYSNEPK 509 >gi|293400750|ref|ZP_06644895.1| putative single-stranded-DNA-specific exonuclease RecJ [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305776|gb|EFE47020.1| putative single-stranded-DNA-specific exonuclease RecJ [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 534 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 240/565 (42%), Gaps = 49/565 (8%) Query: 28 NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFL-NPSIRLLMPDPLILTDCDKAARRIV 86 R I +P + A+VL ++++ D L P + DP + A R+ Sbjct: 9 QRMEDIQCTFGLPSLCAKVLAAKDLANDEIAVLLQEPKLS----DPFCANGVKEVADRLY 64 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 QA EK+++ GDYD DG + A+M+ L ++ YIP+R +GYG + + + Sbjct: 65 QAKQKKEKVLVCGDYDADGICATAIMVDALRSYGIDCGFYIPNRFSEGYGLHENTVGLAK 124 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 +G L+ITVD G + AL +A GIDVIV DHH + E LV+P + + Sbjct: 125 QKGYALLITVDNGVKAKTALSFAHTMGIDVIVTDHHSMDEEVT-CLQLVHPTLMGE--PF 181 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 L AGV ++ + ++ + L +A + D++PL RA V Sbjct: 182 TTLSGAGVALMLSRALIGEKKEH------------VVLACVAAIADIMPLHKETRAIVKL 229 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES---NLGSRLLIS 323 G+ ++ P ++ L + + Y I P +N GR+ + N + L+S Sbjct: 230 GISYLKQGICPPIRFLAKERYPKWDEML--IAYQIVPKLNVTGRLADMVNVNNTVKYLLS 287 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 +E++ +A +++ LN+ R++M ML +A+ V + ++ D +H G+ Sbjct: 288 TSMEEIQHVAKQINDLNEKRKVMSDDMLLKAKTLVHEEY------RFQLLFDDSFHEGMA 341 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 GL+A +L E+ P + GS RS D+ LV GGH A Sbjct: 342 GLVAGKLAEELQMPVMV-AARNQDHFKGSIRSQGLLDLTTFFDECKP--SLVSYGGHKAA 398 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV-LNASAVNIALIDMLESAGPY 502 AG+ + D+ +V + D + + S + IA ++ L+ P+ Sbjct: 399 AGIGFSYDKKQVIQDYVNSRMEQVVFDNDS----SYDVIAVERSEITIAEVESLQLLAPF 454 Query: 503 GAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSR 561 G G P+F K+Q R + AH + L+A+ F+ + Sbjct: 455 GEGFEEPLFLLEKQKVQDCRSLSKGAHTKWILSDD----LEAMQFQSRDWEF-----YNP 505 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRV 586 ++ G+L +N + G K+ + V Sbjct: 506 EATLNFIGNLRINSFMGRKKVNIYV 530 >gi|315586336|gb|ADU40717.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori 35A] Length = 516 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 135/516 (26%), Positives = 247/516 (47%), Gaps = 32/516 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A++ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +D YG + +EK A LIITVD G +++A ++ + +I+ DHH Sbjct: 83 PNRFIDSYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNMKRKMIQQQVFEEALKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 F G+++ + ++ + + Sbjct: 481 FNTERF-------LKAGEKVSAIFSVELDEYSNEPK 509 >gi|297379565|gb|ADI34452.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter pylori v225d] Length = 516 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 137/510 (26%), Positives = 248/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++A ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL LV Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLVG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++ Q+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNIKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GSGRS D+ + Sbjct: 310 -GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSGRSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+V + N L + + F I+P P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLT----LTL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E+ PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G++++ + ++ Sbjct: 481 FNTERF-------LKAGEKVNAIFSVELDE 503 >gi|15644976|ref|NP_207146.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter pylori 26695] gi|2313437|gb|AAD07405.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter pylori 26695] Length = 516 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 139/510 (27%), Positives = 248/510 (48%), Gaps = 32/510 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DHH Sbjct: 83 PNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL-IERVNISSPITAENLGYMIGPSI 305 +AT+ D++PL NR V K L +++ + L V + A ++ + I P I Sbjct: 195 VATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLI 254 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ ++ + L +++SQ+ L +L N R++++ + E+A + Sbjct: 255 NSAGRMQDAKMALDFLSANNSQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMV----- 309 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 +IV D WH G++G++A++L E +PS +F+E G GS RS D+ + Sbjct: 310 -GEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKE-GVYKGSARSSSNIDL--ID 365 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + +L+ GGH A GL+VE+ N L + + F ++P T P L Sbjct: 366 ALNGVSSLLLGYGGHRQACGLSVEKNNIISLFETLENFDFKVLPFCKTEPPLT----LKL 421 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ L++++E PYG NP P+F N ++ +++ +H + F+ ++ +AI Sbjct: 422 KDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVK-EAIY 480 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 F G+++ V + ++ Sbjct: 481 FSAERF-------LKAGEKVSVLFSVELDE 503 >gi|170078344|ref|YP_001734982.1| single-strand-DNA-specific exonuclease [Synechococcus sp. PCC 7002] gi|169886013|gb|ACA99726.1| single-strand-DNA-specific exonuclease [Synechococcus sp. PCC 7002] Length = 761 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 139/582 (23%), Positives = 247/582 (42%), Gaps = 41/582 (7%) Query: 17 RWVSLLGQEGI----NRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPD 71 W L E R +T +A++L R + + FLNP Sbjct: 2 NWQVLATPEVPDSFIRRVEILTDGKG-DRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSA 60 Query: 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIP 128 + +A R++QA EK+ I+GD+D DG + +++ L YIP Sbjct: 61 FAFGQEMKRAIHRLIQAKERGEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIP 120 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 +R+ + +G N +++ GA LII D GST+ + +A + ID+I+ DHH + Sbjct: 121 NRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAHAKSLDIDLIITDHHTLPETR 180 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 +++NP + HL V + ++ + L P + LLDLVA+ Sbjct: 181 PDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPD----PTRPPVTDLLDLVAIG 236 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNP-----GLKALIERVNISSPITAENLGYMIGP 303 + D+V L G R G+ ++Q NP + + ++ + IGP Sbjct: 237 LIADLVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGP 296 Query: 304 SINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 INA R G+++ LL S + LA + ++ N R+ ++ +++QA+A++ + Sbjct: 297 RINAVSRIYGDASFCVELLTSRERGRCGYLAQQTELANARRKEIQQKVVQQAKAQI--ET 354 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDI 421 D+ SV+V+ +W G++GL+A+++ + FGRP+ +++ E GS RS G D+ Sbjct: 355 LDLSTTSVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQDLWKGSARSAHGIDL 414 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA--LITTPVFKI 479 +V + +L + GGH AAGL+V N + A + I Sbjct: 415 YDLVQA--QGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITI 472 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--KLQSIRVVNLA------HLQM 531 D V+ + + +L LE P+G GNP P + + + + + Sbjct: 473 DLVVAIADLGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKT 532 Query: 532 TFESQD-SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 FE D ++ + I + G ++G + V L Sbjct: 533 NFELWDETDQISGIWWG------GHPDDLTQGAGLDVVVELD 568 >gi|325282947|ref|YP_004255488.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus proteolyticus MRP] gi|324314756|gb|ADY25871.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus proteolyticus MRP] Length = 695 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 156/578 (26%), Positives = 257/578 (44%), Gaps = 48/578 (8%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW + +++ + A+ + R + + L+P R L P+P Sbjct: 6 RWQLARPAPLPAL-RDLMERYGLSAPAAQWVYGRGLRPE----LLSPEHR-LTPNP---- 55 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +AARR+VQAI ++I I GDYD DG + A ++ L + + +IP R+ +GYG Sbjct: 56 GLREAARRLVQAIRAGKRIRIHGDYDADGVTATATLVLGLQALDADVHGFIPHRLEEGYG 115 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 +PS +++ L++TVDCG ++ + + +G DVIV DHH + Sbjct: 116 IHPSKLDEHAQ-SCDLLVTVDCGVSNREEVAGLLERGTDVIVTDHHAPPPTFPDCLVVHP 174 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 + +L AGV + +L +++ L P L L L T+ DV PL Sbjct: 175 ELTANYDPALHNLTGAGVAYHLLWAVHQELGLPEPRP-------LSALATLGTIADVAPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 G NRA V GL GL+AL+E + + +A ++ +++ P INA GR+GE++ Sbjct: 228 TGENRALVGVGLAALPGTDIVGLRALLELSGV-AQPSARDVAFVLAPRINAAGRMGEADR 286 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL + Q LA L+V N+ RR ++ M +A V ++V Sbjct: 287 ALELLTTSSPQRAGALAQYLEVRNEERRELQDRMYREALDLV------DPGERALLVTRP 340 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 WHPG++G++A++L E+F RP + ++ G GS RS G I + +L++ Sbjct: 341 DWHPGVMGIVASKLLEQFYRPVYIVAQ-----GKGSVRSTPG--ISAVGGLRYSHDLLLR 393 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH AAG ++E N RL D Q +A + P +D L A+ + L L Sbjct: 394 YGGHPGAAGFSLEEANLPRLRDRLQDYAAQFP---VPVPHVTLDAPLPATYATLDLWQEL 450 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 ++ PYG G P++ + L R+V + F++ L+ I FR G Sbjct: 451 QAFEPYGEGLRPPLWHLRS-PLSGTRLVGRNRDCLQFQAAG---LRGIKFREQDAATGPR 506 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + L + +RG + + P + Sbjct: 507 ---------DLAVRLRRSEFRGRVSAEWEAEELRPPQA 535 >gi|229021094|ref|ZP_04177750.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH1273] gi|229022324|ref|ZP_04178863.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH1272] gi|228738924|gb|EEL89381.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH1272] gi|228740196|gb|EEL90537.1| Single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus AH1273] Length = 553 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 143/513 (27%), Positives = 232/513 (45%), Gaps = 25/513 (4%) Query: 29 RALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQ 87 R L + ++ + ++ L + S + + F+ P + +P +L D A RI++ Sbjct: 18 RMLYLARQANLDPLLGYHLFLHGIQSEEQVQSFIYPDVSQFH-NPFLLNDMKHAVERILK 76 Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147 +I E + IFGDYD DG S ++ + L + +P R +GYG +P ++ + Sbjct: 77 SIQQKETVYIFGDYDCDGITSSTILKQALQKLGAHVISRLPLR-EEGYGLSPHAVD-SLP 134 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 E L+ITVD GS+S+ A++ A +GIDVIV DHH+V A VNP R D+ Sbjct: 135 ENVALLITVDNGSSSHPAMKRAKEKGIDVIVTDHHEVLGAHPDCLAFVNPKRKDNTYPYQ 194 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 HLC GV ++ ++ L+QD + ++ + T+ DV+PL G NRA G Sbjct: 195 HLCGVGVALKLIQALFMTLKQDWIKETW----NYIEYATIGTIADVMPLTGENRAICWYG 250 Query: 268 LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 L R N LK E++ + I + ++G++IGP +N+ GRI + N+GS +L + Sbjct: 251 LYKMRTCPNSLLKLFREQLKLK-YIDSTSIGFLIGPMLNSCGRISDPNIGSDILQKAEPT 309 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 L LN R+ + + E A + Q ++V +H GI+G+LA Sbjct: 310 I--EDIQHLMNLNNQRKQLTTKQFELAFDIIQNQSLAQD---TLLVVQGDFHKGIIGILA 364 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG-- 445 +++ + +P+ + + G S RS G + + +L K GGHA AAG Sbjct: 365 SKISNHYKKPTIVFTNDGIG----SARSGNGSKFSIVQAIQSCGELLKKFGGHAAAAGLS 420 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 + E N R + Q+ A + PV L D L + P+G G Sbjct: 421 IVPEEKNIQRFRERIQEAAKQQI---HFKPVSYFISEFPIYNFPNHLFDDLMALEPFGNG 477 Query: 506 NPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ 536 +P P F N H+Q F + Sbjct: 478 HPKPSFRSQNIFSCGHSYFGKDKEHVQFFFSKK 510 >gi|149002291|ref|ZP_01827233.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP14-BS69] gi|147759606|gb|EDK66597.1| Single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus pneumoniae SP14-BS69] Length = 450 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 227/457 (49%), Gaps = 25/457 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + W L E I +K + VAR+L R + + K FL PS+ L D + Sbjct: 10 YEWQFALQVED-ADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLH-DAYL 67 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QAI E I+++GDYD DG S +++ L +Y+P+R DG Sbjct: 68 LHDMDKAVERIRQAIEERENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDG 127 Query: 135 YGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + AYA Sbjct: 128 YGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYA 187 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +V+P D +L GV F + + ++ + LLDLVA+ T+ D+ Sbjct: 188 IVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQ-----------VELLDLVAIGTIADM 236 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIG 312 V L NR V GL + GL+ +++ I ++ +T E +G+ I P +NA GR+ Sbjct: 237 VSLTDENRILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLD 296 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 + N LL D +E +A+ + N+ R+ + ++ E+A+ V + V V Sbjct: 297 DPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV------DPEKKVQV 350 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEG 432 + + W+PG++G++A RL E+ G+ ++ EDG+ GS RS+E DI + Sbjct: 351 LAKEGWNPGVLGIVAGRLLEELGQTVIVLN-IEDGRAKGSARSVEAVDI--FEALDPHRD 407 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 + + GGHA AAG+T+E L + + Sbjct: 408 LFIAFGGHAGAAGMTLEVEQLSDLSQVLEDYVREKGS 444 >gi|186684176|ref|YP_001867372.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme PCC 73102] gi|186466628|gb|ACC82429.1| single-stranded-DNA-specific exonuclease RecJ [Nostoc punctiforme PCC 73102] Length = 816 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 150/620 (24%), Positives = 258/620 (41%), Gaps = 62/620 (10%) Query: 16 FRWVSLLGQEGINR-ALAITQKHAIPDIV--ARVLVNRNV-SIDYAKDFLNPSIRLLMP- 70 +W ++ + A+ Q + + A++L R + F+N + P Sbjct: 5 QQWTITATEQPLEWFIQAVKQHTPLSSGIYAAQLLWQRGIKDNQQLTAFIN--YKDYQPA 62 Query: 71 DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMY 126 P + A R+ QA EKI I+GD+D DG + +++ L + Y Sbjct: 63 SPFEFGQEMQLAIARLQQAYNAKEKIAIWGDFDADGITATSVLWDGLGQFFKQNTQLIYY 122 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP+R+ + +G N ++ +G +LI+T D GST+ + + YA GIDVIV DHH + + Sbjct: 123 IPNRLKESHGLNNQGIDNLAKQGCKLIVTCDTGSTNIEEIIYAKQLGIDVIVTDHHTLPT 182 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E P A++NP +L V + ++ +Y+ L K P L LLDLVA Sbjct: 183 ERPPVAAIINPRYFSREHQLFNLSGVAVAYKLVEALYQSLPNVAKHP----LEDLLDLVA 238 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARR--------QGNPGLKALIERVNISSPITAENLG 298 + + D+V L G R G+ + + PG+ L+E S ++ Sbjct: 239 VGLIADLVQLSGDCRYLAQLGIQRLQEDFKQPPTARRRPGVGRLLELC-QKSGDRPTDIS 297 Query: 299 YMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 + +GP INA R G+++ LL S D + LA ++ N R+ ++ + Q K Sbjct: 298 FGLGPRINAVSRIQGDASFCVELLTSRDVKRCNELAEVTELANTRRKSLQKDVQAQVAQK 357 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG-------- 409 + D+ SVIV+E +W G++GL+A ++ ++ GRP+ +S E G+ Sbjct: 358 LTQL--DLSTTSVIVLEDAQWPAGVLGLVAGQVAQETGRPTILLSTELAGEEDFALTPYS 415 Query: 410 -------IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 GS RS+ D+ ++V + +L + GGH AAGL++ N + Sbjct: 416 LLPAPLARGSARSVNSVDLYQLVK--DQAHLLHRFGGHPFAAGLSLLVENIPLFTAAINQ 473 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ--- 519 + + TP + D + + + L L+ P G GNP P N + Sbjct: 474 QLRQSLGSTTLTPTVQADLTVTVADLGKELFLELKVLEPCGMGNPVPKLLIQNCWFENAW 533 Query: 520 ---SIRVVNLA--HLQ--MTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 +++ + AF G G + + R L Sbjct: 534 HRNQQDWQGKKVQYIKTEFDIRDDSGRS----AF--PGLWWGHYKDELPIGRCDCIAELD 587 Query: 573 VNYWRGSKRCQLRVLDASPV 592 N + KR ++R++ P Sbjct: 588 YNTF--KKRYEIRLIAVRPS 605 >gi|78485592|ref|YP_391517.1| phosphoesterase, RecJ-like [Thiomicrospira crunogena XCL-2] gi|78363878|gb|ABB41843.1| exonuclease RecJ [Thiomicrospira crunogena XCL-2] Length = 597 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 151/584 (25%), Positives = 247/584 (42%), Gaps = 32/584 (5%) Query: 28 NRALAITQKHAIPDIVARVLVNR----NVSIDYAKDFLN----PSIRLLMPDPLILTDCD 79 ++ + ++ A+++ +R + S D + L P ++ L P L + Sbjct: 17 DKIHQAALSLGLSELQAKLVASRLTEADFSHDNMPEELQKIVFPKLQYLQH-PEQLKNAK 75 Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSV---NANMYIPDRIVDGY 135 +AA I A+ + KI++ DYD DG S + R L + V I +R +GY Sbjct: 76 QAAELIADAVESDGKIVLATDYDTDGVTSAWVATRALIDYFGVSPERIEHMIGER-KEGY 134 Query: 136 GPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 G ++ + I L+I+ D GS+ ++ + GI V V DHHQ+ +E P A Sbjct: 135 GITEEVVNRILAIKGSIDLVISADQGSSDEPRIKRLADAGIKVCVTDHHQMTTEGAPPSA 194 Query: 194 LV--NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN-FDLLSLLDLVALATV 250 NP + + V+FLV+ L + +P L L +AL TV Sbjct: 195 ACTVNPQQAGCDYD-KTVAGCFVIFLVMGQTRTELIRRQVIPETTPSLKDLTQNIALGTV 253 Query: 251 CDVVPLIG-LNRAYVVKGLMVARRQGNPGLKALIERV-NISSPITAENLGYMIGPSINAG 308 D V L NRA V GL + +P +AL + N P AE LG+ + INA Sbjct: 254 ADSVSLKSVNNRAIVQAGLAAINQFSHPAWQALQKMNDNQGQPFNAEYLGFQVATRINAA 313 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 R+ + + L + ++ L +LD N +RR + ML+QA + + Sbjct: 314 SRVSDVTTAFKFLNASSLEQATPLLAQLDQDNLDRRSQQEGMLKQARETAEALYHENKFT 373 Query: 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-SIEGFDIGKMVSF 427 I + + GI G++A+R+ E++G P+ A++ EDG GSGR + D+ + Sbjct: 374 LSIRM---TGNAGIQGIIASRIGEQYGVPTIAMTDLEDGYLAGSGRGIVSNIDLREAFQT 430 Query: 428 A--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 G+ GGH AAG + F F++ + + P + DG L Sbjct: 431 MAERHPGLFKSMGGHKGAAGCMIPIEKFDIFSTLFEETIQEQLNHTVPIPTIETDGRLTG 490 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQA 543 + +LI L PYG P P+F+ ++Q +R V HL S D + + A Sbjct: 491 RQLTPSLIQELNLLEPYGREWPKPLFSG-VFEIQDLRPVGQTKTHLSFKLRSDDRQIISA 549 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 I F T S G+++ +N + G QL+V+ Sbjct: 550 IFFNAKPTAEAP-DGFSIGEKVECAYQPSLNTFYGKTSLQLKVV 592 >gi|322382946|ref|ZP_08056778.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153066|gb|EFX45524.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 396 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 129/392 (32%), Positives = 197/392 (50%), Gaps = 18/392 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDP 72 S RW G + + + H + + AR+L R ++ + A+ FL+ S + DP Sbjct: 4 SKARWQ--TGCAESSVVQKLAEAHHLDTLTARLLALRGITTPEAAESFLH-SRQDGFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D KA RI A+ + E I I+GDYD DG S +L+M L + YIP R+ Sbjct: 61 FLMKDMKKAVDRIRLAVEHKEFIRIYGDYDADGVTSTSLVMFLLRKIKARFDYYIPHRVR 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYG N +EK +G LIITVD G ++ + + Y G+DVIV DHH+ Sbjct: 121 EGYGLNRQAVEKAAEDGVDLIITVDTGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 ALVNP + D HL GV F + + + + LL+LVA+ TV D Sbjct: 181 ALVNPKQADCPYPFKHLAGVGVAFKLAHALLDRVPE-----------ELLELVAIGTVAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRI 311 ++P G NR V GL ++ PG++AL++ I +T+ +LG+ +GP +NA GR+ Sbjct: 230 LMPFHGENRTIVKMGLKRMQQSAFPGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 G +N LLI+ DS LA LD LNQ R+ + + E+A A Q + Sbjct: 290 GSANNSVELLITGDSGRANELAQLLDELNQERQRIVREINEEALAIAAEQVQKGNT--FL 347 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 VV W+ G++G++A+++ E F + I Sbjct: 348 VVAKPDWNEGVIGIVASKIVETFHKTDHCIQH 379 >gi|113474473|ref|YP_720534.1| exonuclease RecJ [Trichodesmium erythraeum IMS101] gi|110165521|gb|ABG50061.1| exonuclease RecJ [Trichodesmium erythraeum IMS101] Length = 810 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 147/592 (24%), Positives = 258/592 (43%), Gaps = 50/592 (8%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDI----VARVLVNRNV-SIDYAKDFLNPSIRLLMP 70 W L + + + +P++ +A++L R + + + FL+P Sbjct: 6 KYWQILSSNHPPYSFIESFKSY-VPELSGKYLAQLLWQRGIKNPEDIASFLDPKQYKPAS 64 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYI 127 ++ + A RI+ A N EK+ I+GD+D DG S +++ L + YI Sbjct: 65 FSAFGSEINNAVARIISARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQLTYYI 124 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R + +G N S +E+ + LIIT D GST+ ++YA + GID+IV DHH + ++ Sbjct: 125 PNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNIAEIEYANSLGIDIIVTDHHTIPTK 184 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 P +A++NP +L GV + ++ +Y + ++P L LLDLVA+ Sbjct: 185 RPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLP----LTELLDLVAI 240 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR----RQGNPGLKALIERVNISSPITAENLGYMIGP 303 + D+V L R G+ R + PG+ L+E + ++ + IGP Sbjct: 241 GLIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELC-QKTGDRPTDISFGIGP 299 Query: 304 SINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 INA R +GE++ LL S + Q + LA++ ++ N R+ +E + + K+ Sbjct: 300 RINAVSRIMGEASFCVELLTSRNPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKL- 358 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------IGSGR 414 D+ VIV+ +W G++GL+A ++ +K+GRP+ S E + GS R Sbjct: 359 -DLSTTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEETEVTKTSEKKLLARGSAR 417 Query: 415 SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 S+ ++ ++V + +L GGH AAGL++ N D + I+ Sbjct: 418 SVGNINLYELVK--NQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQ 475 Query: 475 -PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA 527 V ++D ++ S + L L+ P G GNP P N I + Sbjct: 476 TSVIEVDLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNK 535 Query: 528 --HLQMTFESQDS---ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 +++ FE D + I + Y + E + L N Sbjct: 536 VRYIKTNFEICDKSIDKGFPGIWWGHYKEEIPEEI-------CDAVLELDFN 580 >gi|67921137|ref|ZP_00514656.1| RecJ exonuclease [Crocosphaera watsonii WH 8501] gi|67857254|gb|EAM52494.1| RecJ exonuclease [Crocosphaera watsonii WH 8501] Length = 781 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 151/618 (24%), Positives = 271/618 (43%), Gaps = 48/618 (7%) Query: 13 ISGFRWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLL 68 I+ ++W L + + I K+ + A++L R + + + + FL+ Sbjct: 3 INRYQWQVLPIISLPSWLVDIVNKYCANSQGTYAAQLLWQRGIKTKEKLQGFLDSDYYQP 62 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANM 125 + + A +R+ A+ N +K+ I+GD+D DG + +++ L + N Sbjct: 63 LSPWEFGYEMKLAIKRLKFAMDNQQKVTIWGDFDADGITATSVLWEGLGQFFIPHLQLNY 122 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 YIP+R + +G N ++K EG LI+T D GST+ + + YA + GID+I+ DHH + Sbjct: 123 YIPNRSKESHGLNIPGIKKLAEEGTILIVTCDTGSTNLEEINYANSLGIDIIITDHHTLP 182 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E +++NP + L V + ++ +Y + K P L +LLDLV Sbjct: 183 DERPNVISIINPRYFSEEHPLFSLSGVAVAYKLVEALYLSFPETPKSP----LENLLDLV 238 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVAR----RQGNPGLKALIERVNISSPITAENLGYMI 301 A+ + D+V L G R +GL + PG+ L++ S ++ + I Sbjct: 239 AIGLIADLVELKGDCRYLAQQGLKKLQQQLTNTTRPGVAFLLKLCKRSGD-RPTDISFGI 297 Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 GP INA R G+++ LL S D + LA++ ++ N R+ ++ + + E K+ Sbjct: 298 GPRINAISRIQGDAHFAVELLTSKDDKLCNKLALETELANTRRKSLQKDIKKDVEKKL-- 355 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------IGS 412 Q D+ VIV+E +W G++GL+A ++ +++GRP+ ++ E GS Sbjct: 356 QALDLSTTQVIVLEDPQWQSGVLGLVAGQIAQEYGRPTILLTTAETEDMSANDIKLARGS 415 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD-FFQKFAHNIVPAL 471 RS+ D+ K+V A ++ +L + GGH AAGL++ N + Q+ I+ Sbjct: 416 ARSVHNIDLYKLV--ASQQYLLHRFGGHPFAAGLSLPVENLSLFRESINQQLRQEIIDIN 473 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRV 523 + D V+ S + L L+ PYG GNP P N ++ + Sbjct: 474 TLSSTITADLVVTVSQLGQTLFRELKLLEPYGMGNPIPRLLIQNCWFEGLGNRNIKDAKN 533 Query: 524 VNLAHLQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW-RGS 579 + +++ F D I + E L Q + K L N + +G Sbjct: 534 NKIQYIKTKFNIYDRSVEQGFPGIWW----EHYQEELPQGQDKLCDAIVELDYNTYGQGR 589 Query: 580 KRCQLR-VLD-ASPVEGH 595 +L + + E Sbjct: 590 YEVRLIELRESLKVAENQ 607 >gi|289549277|ref|YP_003474265.1| phosphoesterase RecJ domain protein [Thermocrinis albus DSM 14484] gi|289182894|gb|ADC90138.1| phosphoesterase RecJ domain protein [Thermocrinis albus DSM 14484] Length = 545 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 147/582 (25%), Positives = 256/582 (43%), Gaps = 60/582 (10%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 +SG W L + + + + + +VA+V+ NR V+ + L+ +R ++P Sbjct: 2 KGLSGKEWNLLSERISPD--PEMIRSYG--YVVAQVMANRGVTAEA----LDLKLRKILP 53 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P ++ + D A RI +AI E I+I+GDYDVDG + L+ RFL + + +P+R Sbjct: 54 -PHLIPNMDIAVERIAKAIKKRENILIYGDYDVDGVTASVLLYRFLRYAGAKVQVVLPNR 112 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 GYG N L++K+ + L+ITVD G+T+ + L + D IV+DHH E P Sbjct: 113 -SSGYGLNIDLVKKW-DSWVDLLITVDNGTTALEEL---RGRSKDTIVLDHHNPHGELPP 167 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A + + + + G+ F ++ + R L+ D +D L LVA+ T+ Sbjct: 168 AILVNPKIDQNTPKDLREISSVGLAFYLITCLQRELQLD------YDTRDELPLVAIGTL 221 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQ-----GNPGLKALIERVNISSPITAENLGYMIGPSI 305 D + L LNR V G+ GL+ LIE+ I PIT+ ++ +++ P + Sbjct: 222 GDFMNLNTLNRILVYNGIRALNYYLQKGVKLLGLRLLIEKAGIPLPITSRDISFLVVPRL 281 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 N+ GR+ RLL + ++ L ++++ +Q R+ + + AE ++ Q Sbjct: 282 NSPGRVANPYYSFRLLSENRESIVKQLVLQIENFHQARKKLTEIAVGLAEEQLQKQ---- 337 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 + S+ +++ + G+ G++A +L + +P +S + S RS+EG DI Sbjct: 338 KDVSIPLLKLEGRFKGVGGIVAGQLVSRIQKPVVVVSVND-NLSSASARSVEGIDIH--S 394 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + A + VK GGH+ A G T+ L + + +P + ID L Sbjct: 395 TLAPLAHLFVKWGGHSQAMGFTIHTHLLDVLEENLRY-----MPLPDSELRLDIDMELPI 449 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 + +L++ L P+G G P P F LQ + + Sbjct: 450 RRCDESLVEALRRMEPFGEGFPFPTFLSEPLTLQISEI------------SSGRLV---- 493 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK--RCQLR 585 +Y G L+ H+ G + WRG LR Sbjct: 494 --MYHPDTGTRLVSYDR---HLIGKISQREWRGRVVYSPSLR 530 >gi|218296347|ref|ZP_03497090.1| single-stranded-DNA-specific exonuclease RecJ [Thermus aquaticus Y51MC23] gi|218243141|gb|EED09672.1| single-stranded-DNA-specific exonuclease RecJ [Thermus aquaticus Y51MC23] Length = 665 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 148/575 (25%), Positives = 243/575 (42%), Gaps = 53/575 (9%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW L + + + A L +R V D + L Sbjct: 5 RWRLLSLPPLPEW-REVMEAFGVGPEAALALWHRGVRRKEDLDPPLRLLPL--------K 55 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 ++A +++AI ++I + GDYD DG A+++R L+ + +IP R+ +GYG Sbjct: 56 GLEEAVDLLLKAIREGKRIRVHGDYDADGLTGTAILVRGLTALGARVHPFIPHRLEEGYG 115 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + + A++ +TVDCG ++ L+ G++V+V DHH + P L Sbjct: 116 VLMERVPEHLE-AAEVFLTVDCGIANHAELKELVENGVEVLVTDHHTPREAPPPGVVLHP 174 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 H AGV FL+L ++ L L DL AL T+ DV PL Sbjct: 175 AYTPG---LGEHPTGAGVAFLLLFALHERLGL-------PPPLEYADLAALGTIADVAPL 224 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 G NRA +GL GL+ L + V + A+ + + I P INA R+GE+ Sbjct: 225 WGWNRALAKEGLARMATSAWVGLRLLAQAVGYTG--QADEVAFRIAPRINAASRLGEAEK 282 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 +LL++D +E L +L+ LN R+ +E AML + +V + IV+ + Sbjct: 283 ALKLLLTDSEEEARALVEELNRLNARRQTIEEAMLRRLLPQV------DPEERAIVLRDE 336 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 HPG++G++A+R+ E RP F ++ G G I + + E +L + Sbjct: 337 EGHPGVMGIVASRILEATLRPVFLVAQ-------GKGTVRSLAPISAVEALKSVEDLLKR 389 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH AAG ++ F L ++A + P+ L A + + L Sbjct: 390 FGGHREAAGFAMDEALFPELKRRLLEYAARFPEPELEVPLL---APLPAPGLLAQVYREL 446 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555 E PYGAGNP P+F + R + HL + ++ +A+R+ G Sbjct: 447 ELLKPYGAGNPEPLFLLQG-SPEEARTMGEGRHLAFRLQG-----VRVVAWRMGG----- 495 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + K + V G L N W GS +++ + Sbjct: 496 ---LAVPKEVEVAGLLTENAWNGSVSYEVQAVHLR 527 >gi|119493261|ref|ZP_01624101.1| RecJ exonuclease [Lyngbya sp. PCC 8106] gi|119452734|gb|EAW33912.1| RecJ exonuclease [Lyngbya sp. PCC 8106] Length = 812 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 152/636 (23%), Positives = 270/636 (42%), Gaps = 81/636 (12%) Query: 18 WVSLLGQEGINRALAITQKHAIPDI----VARVLVNRNV-SIDYAKDFLNPSIRLLMPD- 71 W E + + +++ IP+I A++L++R + + + FL+ + P Sbjct: 2 WQIQPTVEIPDWMVPALRRY-IPEIDGRFAAQLLMSRGIQTPEQLAVFLD--LNQYKPSS 58 Query: 72 PLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC----------- 119 P ++ A R+V A E I I+GD+D DG + A++ L Sbjct: 59 PFEFGSEIKWAVNRLVIARNCDEAIAIWGDFDADGITATAVLWEGLGQFFNQAGRLAEPT 118 Query: 120 ---SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176 S + YIP+R+ + +G N + +E +G ++I+T D GST+ ++YA GIDV Sbjct: 119 DDASACLSYYIPNRLTESHGLNIAGIEGLAQQGVRVIVTCDTGSTNITEIEYAKQLGIDV 178 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 IV DHH + E P A++NP L HL V + ++ +Y+ L + P Sbjct: 179 IVTDHHTLPPERPPVVAIINPRNLSPQHPMYHLSGVAVAYKLVEALYQTLPDIPEQP--- 235 Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGL----MVARRQGNPGLKALIERVNISSPI 292 L +LLDLVA+ + D+V L G R G+ + PG+ L+ + Sbjct: 236 -LENLLDLVAIGLIADLVQLTGDCRYLAQCGIEKLKQQQQNPTRPGVGKLLSLCKRTGD- 293 Query: 293 TAENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 ++ + +GP INA R G++ LL S D + LA++ ++ N R+ ++ + Sbjct: 294 RPTDISFGLGPRINAVSRIHGDARFCVELLTSRDEKRCHKLALETELANTRRKSLQREVS 353 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---- 407 K+ D+ VIV+ +W G++GL+A ++ +++GRP+ +S + G Sbjct: 354 RDVIKKLAQL--DLSTTCVIVLSDPQWPTGVLGLVAGQVAQEYGRPTILLSTDIGGNLST 411 Query: 408 ----------------KGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 GS RS+ D+ ++V + +L + GGH AAGL++ Sbjct: 412 EDFPKEGLKIEENPQLLARGSARSVNQIDLYELVK--GQAHLLHRFGGHPFAAGLSLPVE 469 Query: 452 NFGRLCDFFQKFAHNIVPALI---TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 N + + + + P+ ++D V + + L L+ P G GNP Sbjct: 470 NIPMFTEAINRQLREQIEQIPGGGLEPIVQVDLVCTVAELGRDLFQELKLLEPCGMGNPV 529 Query: 509 PVFAFPNHKLQSI------RVVNLA--HLQMTFESQDSET---LQAIAFRVYGTPLGEFL 557 P N + + +++ TFE D + + Y + E Sbjct: 530 PHILIQNCWFSNPWNQNEKDIKGQKVSYIKTTFELWDESVTEGFPGVWWGHYKDEVPE-- 587 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 R + L N + KR ++R+L+ VE Sbjct: 588 -----NRCDLVVELDFNTF--KKRYEVRLLEVRLVE 616 >gi|209525234|ref|ZP_03273777.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima CS-328] gi|209494419|gb|EDZ94731.1| single-stranded-DNA-specific exonuclease RecJ [Arthrospira maxima CS-328] Length = 737 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 146/607 (24%), Positives = 258/607 (42%), Gaps = 51/607 (8%) Query: 18 WVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 W ++ + +A ++H I ++++L++R + + + FL P Sbjct: 2 WQVQPSRKIPDWMIAEIRRHHPNISGKYLSQLLLSRGISTPEKLTRFLEID-SYQPASPA 60 Query: 74 IL-TDCDKAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANM 125 + +A R+ A N EKI+I+GD+D DG + A++ L + + Sbjct: 61 EFGAEMQQAIARLTLAYQRCISHNNPEKIVIWGDFDPDGITATAVLWEGLRQFFGSSVSY 120 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 IP+R+ D +G N +E +G LIIT D GST+ LQ A N GIDVI+ DHH + Sbjct: 121 TIPNRLTDSHGLNQPGIETLAAQGCSLIITCDTGSTNLAELQLAQNLGIDVIITDHHTLP 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 P A++NP L HL + + ++ +Y L ++ P L +LLDLV Sbjct: 181 PTRPPVVAIINPRNLPSDHPLYHLSGVAIAYKLVEALYMALPGVSQQP----LENLLDLV 236 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQG----NPGLKALIERVNISSPITAENLGYMI 301 A+ + D+V + G R +G+ ++Q PG+ L++ + ++ + I Sbjct: 237 AIGLIADLVEITGDCRYLAKRGIQQLQKQQKNPTRPGVSQLLKLCKNNGD-RPTDISFGI 295 Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 GP INA R G+ + LL + D+Q+ LA ++ N RR ++ + K+ Sbjct: 296 GPRINAVSRIYGDVSCVVELLTTRDTQQAYKLAWNTEIANSRRRELQKNLAYDVRKKL-- 353 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF---EEDGKGIGSGRSIE 417 Q D+ IV+ +W+ G++GL+A ++ +++ RP+ ++ E G GS SI Sbjct: 354 QKIDLSTTYAIVLSDPQWYVGLLGLVAGQIAQEYRRPTILLTTEGGTETGLARGSASSIH 413 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT-TPV 476 D+ +V + +L GGH AA L++ N + + ++ Sbjct: 414 PIDLYDLVYS--QRHLLHSFGGHPFAASLSLPIENIPIFKQVIDQQLRQRMGGILLPQSP 471 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH--------KLQSIRVVNLAH 528 +D V + + L L+ P G GNP P N + +R + + Sbjct: 472 IIVDLVCTVAELGYNLFQELKLLEPCGIGNPVPKLLIKNCWFENVWNKNIVDLRRKQVKY 531 Query: 529 LQMT---FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 ++ T F+ + + Y L R L N +C++R Sbjct: 532 IKTTYQLFDDSTESGFPGVWWGHYKEELP-------PGRYDAIVELDFNT--NRSKCEVR 582 Query: 586 VLDASPV 592 +L P Sbjct: 583 LLAVCPA 589 >gi|169350234|ref|ZP_02867172.1| hypothetical protein CLOSPI_00978 [Clostridium spiroforme DSM 1552] gi|169293017|gb|EDS75150.1| hypothetical protein CLOSPI_00978 [Clostridium spiroforme DSM 1552] Length = 559 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 131/568 (23%), Positives = 241/568 (42%), Gaps = 42/568 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW L Q++ I ++A++ +N S L+ + + D + + Sbjct: 16 RWQIL----NDLDYKHYMQEYKINSLLAKIFAYKNYSKPQVDSLLSNRL--IYHDFSLFS 69 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + RI +AI N+EKI I+GDYD DG + ++++ + +IP R+ DGYG Sbjct: 70 EAQMTLERIHEAIENNEKICIYGDYDCDGILATSILVEAFRQLGIEVGYHIPSRLQDGYG 129 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N + +E+ +G LIITVD G + +A+ A GIDVIV DHH A+++++ Sbjct: 130 LNVTRVEQMAAKGYSLIITVDNGIKANEAIDLANELGIDVIVTDHHSHDDNLPNAFSIIH 189 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 D + V + + + + L L A+ T+ D++PL Sbjct: 190 TAISPD-YPYKPISGGFVAYKLASALLNRHDK-----------YLFCLAAITTISDMMPL 237 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE--- 313 + NR+ V + L + P L+ L + + ++G++I P IN+ GR+GE Sbjct: 238 LDENRSLVKRALEFMKENKFPQLELL---LGNNQKYNVTSIGFIIAPKINSFGRLGEIVN 294 Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 ++L L + L+ ++ K +N R+ M + + A + + Sbjct: 295 PNHLVKYFLQNASIGILQAVSSKAIEINSKRQTMTNQQYQTVLASLDA------NDKFLY 348 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + H G++GL+A + ++ RPSF +SF ++ GS R+IEG + + E Sbjct: 349 CYENEVHEGLIGLVAGKYTRQYNRPSFVMSFDQDKKIYKGSARAIEGLSLNNIFKEV--E 406 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L GGH +A G +V + N L + + + P + ++ Sbjct: 407 DVLDSYGGHELAGGFSVSKENVENLKSRLKVYLDEKL--ENYQPPLIDAIEVFGDEISKN 464 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSI-RVVNLAHLQMTFESQDSETLQAIAFRVYG 550 + LE P G GN F + + + ++ N HL+ + ++ +QA+ F Sbjct: 465 SVKQLELLEPLGNGNEETYFYVKDLVVNKVIQLSNGKHLRFDLDLAKAK-VQALYFNQGK 523 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRG 578 + K + + G +N + Sbjct: 524 L----YEQYKDAKTISLVGKFNINVFNN 547 >gi|320334659|ref|YP_004171370.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus maricopensis DSM 21211] gi|319755948|gb|ADV67705.1| single-stranded-DNA-specific exonuclease RecJ [Deinococcus maricopensis DSM 21211] Length = 720 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 148/573 (25%), Positives = 252/573 (43%), Gaps = 48/573 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTD 77 W A+ + + ++A+V+V RN+S + P + L P+P + Sbjct: 12 WQLRAPASNEAL-RAVMDAYRVSPMLAQVIVGRNLSAAHV----TPDL-TLTPNPAL--- 62 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +AA R+V+AI + ++I + GDYD DG + ++++ L + + +IP R+ +GYG Sbjct: 63 -REAAARLVRAIQDRKRIRVHGDYDADGVTATSVLVLGLRELGADVHGFIPHRLNEGYGV 121 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 +P + + + L++TVDCG T+ ++ ++G+DVIV DHH + + Sbjct: 122 HPDRVPEHAD-ACDLLVTVDCGVTNVQEVRALLDRGVDVIVTDHHAPGPDFPDCLVVHPH 180 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + +L AGV + +L + L + DL ++ + DV PL+ Sbjct: 181 LTPEYDGDLHNLTGAGVAYHLLWAVREHLGLGEP-------RAYADLASIGIIADVAPLL 233 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G NRA V GL + GL+AL+ +A ++ ++I P INA GR+GE++L Sbjct: 234 GENRALVRAGLHQLADTQHAGLRALM-GGKKLGLPSARDVAFVIAPRINAAGRMGEADLA 292 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 LL + + + LA L+V N RR+++ M ++A V IVV D Sbjct: 293 LELLTTTSERRAQELATYLEVRNGERRVVQDRMFKEALTLVN------PDDPAIVVTKDD 346 Query: 378 WHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 WH G++G++A++L E + +P F I+ G GS RS G I + +L + Sbjct: 347 WHAGVMGIVASKLLEAYYKPVFIIAQ-----GKGSVRSTPG--ISAVAGLRGAHDLLKRY 399 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGH AAG ++ N FA P +D L A AV AL + Sbjct: 400 GGHTGAAGFAIQEDNIDAFRTRIHAFAEEHPRP---VPSVLLDAPLPAGAVTRALYEAEG 456 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 + P+G G P++ + L R+V + F ++ + + G Sbjct: 457 TFEPFGEGLRRPLWWVRD-DLGGARLVGKRGDTLQFRVGG---VKGVKYGEGAVREGPH- 511 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 V HL +N W G + ++ Sbjct: 512 --------DVAAHLSLNAWAGRENIEVAAEALR 536 >gi|313680239|ref|YP_004057978.1| exonuclease recj [Oceanithermus profundus DSM 14977] gi|313152954|gb|ADR36805.1| exonuclease RecJ [Oceanithermus profundus DSM 14977] Length = 702 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 173/570 (30%), Positives = 259/570 (45%), Gaps = 50/570 (8%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW + + + A+P VA VL++R D L Sbjct: 6 RWTLRPW-PAVGEVARLMARLAVPPEVAAVLLDRGFRDLEDLDPPLEPPPL--------P 56 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +AA RIV+AI E+I I GDYD DG + A++ L + + +IP R+ DGYG Sbjct: 57 GLHEAAARIVRAIERGERIRIHGDYDADGVTAAAILTLGLGELGADVHAFIPHRLHDGYG 116 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 N + + + A L++TVDCG ++ L T G+ VIV DHH V E P +V+ Sbjct: 117 LNMARVPEHRA-AADLLVTVDCGVSNAAELAALTEGGVSVIVTDHHAVPDE-PPEGLIVH 174 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P L G+ AGV F VL + L + L DL A+ TV DVVPL Sbjct: 175 PAYSPALEGRPWPTGAGVAFFVLWAVREALGK-------PPPLEFTDLAAIGTVADVVPL 227 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 +G+NRA V +GL R + GL+ L + A + + I P INA GR+GE+ Sbjct: 228 LGVNRALVKEGLRRLRESRHVGLRTL--AQRHCTNYDAVEVAFRIAPRINAAGRLGEAET 285 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 R L +DD E LA +LD LN+ R+ +E MLE+ V + IV+ Sbjct: 286 AFRALTTDDPLEAARLADRLDALNRERQQVEEEMLERVLPTVNPE------DPAIVIHDP 339 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 HPG++G++A+R+ E+F +P F ++ G GS RS G I + + A L Sbjct: 340 EGHPGVMGIVASRVLERFYKPVFIVAR-----GKGSVRSTPG--ISAVGALAAAAEHLKG 392 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGHA AAG +++ +A P ++DG L+A ++ + L Sbjct: 393 YGGHAGAAGFSIDPERVPGFAAAIHAYARRHPAP---RPEVRLDGPLDADVMD-EVYRSL 448 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555 P+G GNP PVF + +R ++ H+ + ++ I ++ G + E Sbjct: 449 LLLEPFGEGNPEPVFYTSG-PVTRVRPLSEGRHISFSLGG-----VRVIKWKDEGNGVEE 502 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 G+ + V L N WRG + +LR Sbjct: 503 ------GRELEVAAQLVENAWRGVRNLELR 526 >gi|291568922|dbj|BAI91194.1| single-stranded-DNA-specific exonuclease [Arthrospira platensis NIES-39] Length = 789 Score = 270 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 148/609 (24%), Positives = 250/609 (41%), Gaps = 55/609 (9%) Query: 18 WVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 W + + Q+H I + ++L+ R +S + FL Sbjct: 2 WKVQPSPNIPHWMIPEIQRHHPNISGKYLCQLLLCRGISTREQLTRFLEIDSYQPASPGE 61 Query: 74 ILTDCDKAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANMY 126 + +A R+ A N EKI+I+GD+D DG + A++ L + + Sbjct: 62 FGAEMQEAIARLTLAYQKCISHNNPEKIVIWGDFDADGITATAVLWEGLRQFFGSSVSYT 121 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 IP+R+ D +G N +E +G LIIT D GST+ LQ A N GIDVI+ DHH + Sbjct: 122 IPNRLTDSHGLNQRTIETLAAQGCSLIITCDTGSTNLAELQLAQNLGIDVIITDHHTLPP 181 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 P A++NP L HL + + ++ +Y L ++ P L +LLDLVA Sbjct: 182 TRPPVLAIINPRNLPTDHPLYHLSGVAIAYKLIEALYMALPGVSQQP----LENLLDLVA 237 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMIG 302 + + D+V L G R +G+ ++Q PG+ L++ + ++ + IG Sbjct: 238 IGLIADLVELSGDCRYLAKRGIQQLQKQLDQPTRPGVAELLKLCQKNGD-RPTDISFGIG 296 Query: 303 PSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 P INA R G+ + LL + D Q + LA+ ++ N RR ++ + + K+ Q Sbjct: 297 PRINAVSRIYGDVSCVVELLTTPDPQRAKQLAINTEIANLRRRELQKNLAYEVREKL--Q 354 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF---EEDGKGIGSGRSIEG 418 D+ IV+ +W G++GL+A ++ +++ RP+ ++ E G GS RSI Sbjct: 355 RIDLSTTYAIVLSDPQWSVGVLGLVAGQIAQEYSRPTILLTTEGGTETGLARGSARSINQ 414 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT-TPVF 477 D+ +V + +L GGH AAGL++ N + + ++ Sbjct: 415 IDLYDLVY--NQRHLLHNFGGHPFAAGLSLPIENIPIFTQAIDRELRQRMGGILLSQSPI 472 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA---- 527 +D V + + L L+ P G GNP P N ++ + Sbjct: 473 IVDLVCTVAELGSHLFKELKLLEPCGMGNPVPKLLIKNCWFDNVWNENPYDLRGKKVQYI 532 Query: 528 ----HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 HL F+ + + Y L R L N + + Sbjct: 533 RTTYHL---FDDSTELGFPGVWWGHYKEELP-------PGRYDAIVELDFNAH--KRCYE 580 Query: 584 LRVLDASPV 592 +R+L P Sbjct: 581 VRLLAVRPA 589 >gi|15806146|ref|NP_294850.1| single-stranded-DNA-specific exonuclease [Deinococcus radiodurans R1] gi|6458861|gb|AAF10698.1|AE001962_6 single-stranded-DNA-specific exonuclease, putative [Deinococcus radiodurans R1] Length = 684 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 142/506 (28%), Positives = 228/506 (45%), Gaps = 38/506 (7%) Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 A+ ++I I GDYD DG ++ A ++ L N + +IP R+ +GYG +P + + Sbjct: 2 AAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANVHGFIPHRLNEGYGIHPDRVPEHA 61 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 A L++TVDCG ++ D ++ G +V+V DHH + D + Sbjct: 62 A-AADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECLVVHPHLTPDYDPDR 120 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 +L AGV + +L +Y L + + +LL L L TV DV PL+G NRA V Sbjct: 121 HNLTGAGVAYHLLWAVYEELGR-------PEPRALLPLATLGTVADVAPLLGENRALVRA 173 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 GL R PGL+AL+ + TA ++ +++ P INA GR+GE++ LL + Sbjct: 174 GLAEMARTELPGLRALMNEKRVRQ-PTARDVAFILAPRINAAGRMGEADRALELLTTPSD 232 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 E + LA L++ NQ RR ++ M QA +V+ D WH G++G++ Sbjct: 233 HEAKSLAAYLEIRNQERRKIQDDMFAQALQLA------DPNDPALVLTHDDWHAGVMGIV 286 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 A++L E F RP + ++ G GS RS G I + +L + GGH AAG Sbjct: 287 ASKLVETFNRPVYIVAQ-----GKGSVRSTPG--ISAVQGLRESRDLLGRFGGHPGAAGF 339 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGN 506 +++ NFG L + + P ++D L +A+ L+ L P+G GN Sbjct: 340 SLDPQNFGALRERIHGYVRQFPTP---VPAVRLDAPLPVAALTPELLSELSILEPFGEGN 396 Query: 507 PNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P P++ L R+V + F ++ + + GE Sbjct: 397 PRPLWHLRG-PLTDTRLVGKQGDVLQFRFGG---VKGMKYSERDDAAGER---------D 443 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPV 592 V L +N W+G +L P+ Sbjct: 444 VAAELALNEWKGRTSLELHAAALRPL 469 >gi|158338691|ref|YP_001519868.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina MBIC11017] gi|158308932|gb|ABW30549.1| single-stranded-DNA-specific exonuclease RecJ [Acaryochloris marina MBIC11017] Length = 780 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 151/601 (25%), Positives = 262/601 (43%), Gaps = 47/601 (7%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY-AKDFLNPSIRLLMPDPLIL 75 +W+ Q A I+ ++ +A++L R + FL+P+ P P Sbjct: 17 KWLIADIQ---RVAPEISGQY-----LAQLLWQRGIHDPQMIPGFLDPNHYQPTP-PSAF 67 Query: 76 -TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRI 131 + ++A +R++QA ++K+ I+GD+D DG S A+ L IP+RI Sbjct: 68 GAEMEQAVQRLIQACDRNQKVAIWGDFDADGITSTAVFWDGLGQFFTQNRFLTYTIPNRI 127 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + +G N +E+ +G QLI+T D GST+ ++YA G+DVI+ DHH + E P Sbjct: 128 TESHGLNRPGIERLAVQGYQLIVTCDTGSTNLTEIEYANELGLDVIITDHHTLPPERPPV 187 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A++N HL V F ++ +Y L Q + P L LLDLVA+ + Sbjct: 188 TAIINSRYFPSDHPLAHLSGVAVAFKLVEALYLALPQVPQQP----LDHLLDLVAIGLIA 243 Query: 252 DVVPLIGLNRAYVVKGL----MVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 D+V L G R +G+ ++ PG+ L+E + ++ + +GP INA Sbjct: 244 DLVALKGDCRYLAQRGIQQLQRQLTQRTRPGVAKLLELCKRNGD-RPTDISFGLGPRINA 302 Query: 308 GGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 R GE++ LL S DS LA + ++ N R+ ++ +L Q K+ + D+ Sbjct: 303 VSRIHGEASFCVELLTSKDSARCRQLAEETELANTRRKSLQKDVLRQVTRKL--EQLDLS 360 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS------FEEDGKGIGSGRSIEGFD 420 SVIV+ +W G++GL+A ++ + +GRP+ + GS RS+ D Sbjct: 361 TTSVIVLSDPQWPIGVLGLVAGQIAQTYGRPTILLCEETVAGKNNVRLARGSARSVNQID 420 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 + ++V + +L GGH AAGL++ N L + + A + V + D Sbjct: 421 LYELVHS--QANLLTSFGGHPFAAGLSLPVANIPLLVEGINQQARQQQSS-DPAAVVQAD 477 Query: 481 GVLNASAVNIA----LIDMLESAGPYGAGNPNPVFAFPNH---KLQSIRVVNLAHLQMTF 533 V+ + + L L+ P G GNP P N ++ + + + ++ + Sbjct: 478 LVVTLAELATDGGRSLFKELKLLEPCGMGNPVPKLLIRNCWFDQVWNKNIKDRKGNKVQY 537 Query: 534 ESQDSETLQAIAF--RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 +F G G + + L N + +R ++R+ P Sbjct: 538 IKTTFYICDT-SFESGFPGLWWGHYKEEIPAGPCDAIVELDFNAY--ERRYEVRLEAVRP 594 Query: 592 V 592 V Sbjct: 595 V 595 >gi|284053626|ref|ZP_06383836.1| exonuclease RecJ [Arthrospira platensis str. Paraca] Length = 789 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 148/607 (24%), Positives = 255/607 (42%), Gaps = 51/607 (8%) Query: 18 WVSLLGQEGINRALAITQKH--AIP-DIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPL 73 W + + Q+H I + ++L+ R +S + FL P Sbjct: 2 WKVQPSPNIPHWMIPEIQRHHPNISGKYLCQLLLCRGISTREQLTRFLEID-SYQPASPA 60 Query: 74 IL-TDCDKAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANM 125 + +A R+ A N EKI+I+GD+D DG + A++ L + + Sbjct: 61 EFGAEMQEAIARLTLAYQKCISHNNPEKIVIWGDFDADGITATAVLWEGLRQFFGSSVSY 120 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 IP+R+ D +G N +E +G LIIT D GST+ LQ A + GIDVI+ DHH + Sbjct: 121 TIPNRLTDSHGLNQRTIETLAAQGCSLIITCDTGSTNLAELQLAQDLGIDVIITDHHTLP 180 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 P A++NP L HL + + ++ +Y L ++ P L +LLDLV Sbjct: 181 PTRPPVLAIINPRNLPTDHPLYHLSGVAIAYKLIEALYMALPGVSQQP----LENLLDLV 236 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMI 301 A+ + D+V L G R +G+ ++Q PG+ L++ + ++ + I Sbjct: 237 AIGLIADLVELSGDCRYLAKRGIQQLQKQLDQPTRPGVAELLKLCQKNGD-RPTDISFGI 295 Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 GP INA R G+ + LL + D Q + LA+ ++ N RR ++ + + K+ Sbjct: 296 GPRINAVSRIYGDVSCVVELLTTPDPQRAKQLAINTEIANLRRRELQKNLAYEVREKL-- 353 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF---EEDGKGIGSGRSIE 417 Q D+ IV+ +W G++GL+A ++ +++ RP+ ++ E G GS RSI Sbjct: 354 QRIDLSTTYAIVLSDPQWSVGVLGLVAGQIAQEYSRPTILLTTEGGTETGLARGSARSIN 413 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT-TPV 476 D+ +V + +L GGH AAGL++ N + + ++ Sbjct: 414 QIDLYDLVY--NQRHLLHNFGGHPFAAGLSLPIENIPIFTQAIDRELRQRMGGILLSQSP 471 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI------RVVNLA--H 528 +D V + + L L+ P G GNP P N ++ + + Sbjct: 472 IIVDLVCTVAELGSHLFKELKLLEPCGMGNPVPKLLIKNCWFDNVWNENPYDLRGKKVQY 531 Query: 529 LQMTFESQDSET---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 ++ T++ D T + + Y L R L N + ++R Sbjct: 532 IRTTYDLFDDSTELGFPGVWWGHYKEELP-------PGRYDAIVELDFNAH--KRCYEVR 582 Query: 586 VLDASPV 592 +L P Sbjct: 583 LLAVRPA 589 >gi|269123538|ref|YP_003306115.1| phosphoesterase RecJ domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314864|gb|ACZ01238.1| phosphoesterase RecJ domain protein [Streptobacillus moniliformis DSM 12112] Length = 557 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 128/578 (22%), Positives = 254/578 (43%), Gaps = 28/578 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W S N+ + +++ +L+N+ + S + FLNPS + L DP +L Sbjct: 4 KWTSYDSDYLKNK----MELFNKDELITTLLLNKKIYSKEEMNSFLNPSYKQLH-DPFLL 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + ++ +I++ + +KI+IFGDYD+DG + + + ++ +YIP R + Y Sbjct: 59 NNMEEVVDKILEFMDKDKKILIFGDYDIDGISGSLYLSKIFDKLNIKNEIYIPTRTMFKY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 N + +L+I+VD + + G+D+I+ DHH ++ + + + Sbjct: 119 SLNEEYFRNIEEKNIKLVISVDNSFGEILHMDMLKSMGVDLIITDHH-FNNKNMKSILEI 177 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 NP + L +GVVF ++ IY L D+ +L++LAT+ DV+ Sbjct: 178 NPK-KSENYPFKELSGSGVVFKLVQAIYSKLPDR----SISDIYEYCELISLATIADVME 232 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGES 314 + NR + +GL + K ++E I IT ++ Y I P INA G++ Sbjct: 233 CVDENRFLIKRGLKNFSKTNILAFKMIMENFKIDPEYITINDISYRISPLINAIGKLDVP 292 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + L SD + + ++ N R+ E + + + + +I++ + I E Sbjct: 293 LKIIKFLTSDSEKVNIQILNEMYEYNNERKNYEIKIYNKIVKFL--ENKEIKKLNYIYYE 350 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + + GI+G + ++L +F P +S + G GS RSI+ +I K++S Sbjct: 351 INDINSGILGSITSKLALEFKVPVIIVSKVD-GYCKGSCRSIDNKNIYKLISE--FSDYF 407 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 + GGH +AAG + N + D ++ +N+ + +D S ++ + Sbjct: 408 INFGGHNLAAGFLITLDNLTLIRDKIKQKMYNLNLTEKSKNSIVVDVKFPVSQISSKKMT 467 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTP 552 + S GP+G N P F N K ++I + H + ++ + +Q + + + Sbjct: 468 EINSLGPFGLSNDEPNFYDENIKFRNILIFGVDNKHFKANIR-RNGKDIQILGYNLSH-- 524 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + +++ K + + G K +L++ D Sbjct: 525 --KLNLKNSNKLYKIIYTPEL---MGKKVFRLKLKDIE 557 >gi|241767803|ref|ZP_04765397.1| phosphoesterase DHHA1 [Acidovorax delafieldii 2AN] gi|241361146|gb|EER57799.1| phosphoesterase DHHA1 [Acidovorax delafieldii 2AN] Length = 468 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 215/479 (44%), Gaps = 25/479 (5%) Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +PDR+ DGYG P + + GA ++ITVD G S D + A G+ V+V DHH Sbjct: 1 YLVPDRVTDGYGLTPPIARRVAERGADVLITVDNGIASVDGVAEAKALGLTVLVTDHHLP 60 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLL 242 A A+VNPN+ + GV+F VL+ + LR L LL Sbjct: 61 GPALPAADAIVNPNQPGCTFESKSMAGVGVMFYVLLALRAELRARGLFNAATQPKLDPLL 120 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGYM 300 L+AL TV DVV L NR V +GL R P A + T + G+ Sbjct: 121 PLIALGTVADVVKLDANNRRLVAQGLKRIRAGQMPAGVAALFHAAGRKAPAATTFDFGFA 180 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP INA GR+ + LG L++DD+ LA LD +N+ RR +E M +QA + Sbjct: 181 LGPRINAAGRLADMTLGIECLLTDDAGRAAELAATLDGINRERREIEGGMRDQAMLMAES 240 Query: 361 QCDD-IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI----SFEEDGKGIGSGRS 415 D+ + I V +H G+VG++A+R+K+K RP+F + ++ + GSGRS Sbjct: 241 LFDESEEPPPAISVFDPDFHEGVVGIVASRIKDKLHRPTFVFAASSAPGKEHELKGSGRS 300 Query: 416 IEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 I GF + + G+++K GGHAMAAG TV +F F + A + A Sbjct: 301 IPGFHLRDALDLVAKRHPGVILKFGGHAMAAGCTVAEESFDVFEQAFAQVAQEWLDAATL 360 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQM 531 T + DG L ++D L +G G P F ++ S R+V HL + Sbjct: 361 TRRIETDGPLAPEYCRADMVDTLHR-EVWGQGFAPPTF-SEEVQVLSQRLVGEAKNHLSI 418 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 Q + AI F R+ + L VN W+G +R Q V A Sbjct: 419 KLIHQ-GNPIDAIWFGRTE---------PLPARVLLAFRLDVNEWKGERRVQFLVEGAQ 467 >gi|290243093|ref|YP_003494763.1| phosphoesterase RecJ domain protein [Thioalkalivibrio sp. K90mix] gi|288945598|gb|ADC73296.1| phosphoesterase RecJ domain protein [Thioalkalivibrio sp. K90mix] Length = 601 Score = 267 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 158/611 (25%), Positives = 260/611 (42%), Gaps = 38/611 (6%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNR--NVSIDYAKD-FLNPSIRLLMPDP 72 RW + G ++A + + A ++ R D + F++ + L P Sbjct: 2 KRWQEIEGHPD---SVARAVEAGLTPFQAEIVAKRMPEADTDTIRKGFVDVRLANL-DSP 57 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH-CSV---NANMYIP 128 L + A R+V A+ + I I D+DVDG S A++ R L H YI Sbjct: 58 DTLPGIEAATERLVSAVLLEQVIAIETDHDVDGVTSHAILYRTLVHVMGHAPEKVQSYIG 117 Query: 129 DRIVDGYGPNPSLMEKF--INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 R+ +GYG + +++++ +E QL++T D G+ D + +G+D IV DHH V Sbjct: 118 HRLKEGYGLSDAVVDRILAADEKPQLVVTADNGTADEDRIARLAGEGVDTIVTDHHAVPE 177 Query: 187 EEIPA--YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL----RQDNKVPLNFDLLS 240 P A V+P R D + V +L+ + +YR D+ P L+ Sbjct: 178 AGPPRSAVACVSPARDDSAYPDTTIAGCMVAWLLAMRVYRQWCEVQGLDDPGPGRAALID 237 Query: 241 LLDLVALATVCDVVPLIG--LNRAYVVKGLMVAR-RQGNPGLKALIERVNISSPITAEN- 296 +L VAL T+ D V L NR V KGL P + E Sbjct: 238 MLPEVALGTIADCVSLGESVNNRTIVRKGLDRINADDPRPCWRVAKRHTCQHGAPFTEER 297 Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEA 356 L + +GP INA GR+ E+ G + L+S D E E LD N RR +E AM + A Sbjct: 298 LAFDVGPRINARGRLDEAMAGVKFLLSKDEGEAEQWWSVLDAENTQRRAVEKAMKDVAIG 357 Query: 357 KVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG--SGR 414 K Q + S I+V + H G+ G++A+R+ E++GRP+ +S + S R Sbjct: 358 KAEAQVS--KGVSGIMVWMENGHSGVHGIVASRVLERYGRPTLCVSPVHESGDRVTGSAR 415 Query: 415 SIEGFDIGKM--VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL- 471 +EG + + A ++K GGHA A G+T+ER L + + + A Sbjct: 416 GVEGVHVERALRQVKADLGNRVMKFGGHAGAGGITLERSALDALEESWNAACNEQAQAHG 475 Query: 472 -ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAH 528 + P+ +++ + + LE+ P+G PV+A +Q+++ + H Sbjct: 476 LVLEPLLQVEAW-PEGGFDDRRVRELEALAPFGERFRRPVYALKAL-IQTVKAMGQEKTH 533 Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 L++ ++ D T A+ F G+ + V + +N++ G R QL V + Sbjct: 534 LRLALKT-DGGTYGAVYFNAAEPGGETQWR--SGQSVWVAASVGLNHYMGHCRLQLVVRE 590 Query: 589 ASPVEGHHFAK 599 P A Sbjct: 591 MRPANQEQAAV 601 >gi|145641180|ref|ZP_01796760.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae R3021] gi|145274017|gb|EDK13883.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.4-21] Length = 412 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 15/416 (3%) Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245 PA A+VNPN L GV F +++ + R+ + LLDLV Sbjct: 1 MPPADAIVNPNLTQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 60 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGP 303 AL T+ DVVPL NR +GLM R + G+ AL E N + T+ +LG+ IGP Sbjct: 61 ALGTIADVVPLDQNNRILAYQGLMRIRARHCRLGIIALAEVANRNVEQFTSSDLGFCIGP 120 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+ ++G LL++++ + LA+ LD LNQ R+ +E+ M +A Sbjct: 121 RLNAAGRLDNMSIGVELLLANEMSKARELALDLDQLNQTRKEIEAGMKLEAIKICQNLTA 180 Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ I + WH G++G++++R+K+++ RP A + + +G GS RSIEG + Sbjct: 181 LFKELPYGITLYQPDWHQGVLGIVSSRIKDQYHRPVIAFAQDSEGILKGSARSIEGLHMR 240 Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 ++ +++K GGHAMAAGL++ +F F + + + V D Sbjct: 241 DVLERIHSQHPNMILKFGGHAMAAGLSIREEHFADFQHIFNQTVADWLDEEHLQGVIWTD 300 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537 G LN++ N+ ++++S G +G G P P F K+ R + HL+M E Q Sbjct: 301 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQG 359 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L AIAF + + + K+ + L +N +RG++ QL V P++ Sbjct: 360 GVLLDAIAFNIDTRLYPDLSI----KQARLAYKLDINEFRGNRSVQLLVDYIEPID 411 >gi|291276434|ref|YP_003516206.1| putative single-stranded-DNA-specific exonuclease [Helicobacter mustelae 12198] gi|290963628|emb|CBG39460.1| putative single-stranded-DNA-specific exonuclease [Helicobacter mustelae 12198] Length = 517 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 135/504 (26%), Positives = 235/504 (46%), Gaps = 31/504 (6%) Query: 59 DFLNPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL 116 F + S L +P P L D K A+ + + KI+I GDYDVDG S +MM+F Sbjct: 16 RFCDDSFARLQDLPHPHSLKDAQKGAQIVAGIMQEGGKILIVGDYDVDGTLSAVIMMKFF 75 Query: 117 SHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGID 175 N + IP+R DGYG L+E++ + L+ITVD G + D +Y Q Sbjct: 76 GMLGYENVSYLIPNRFSDGYGVQRHLLEQYPS---DLVITVDNGVAALDVGEYCKEQKRK 132 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 +I+ DHH ++ + A AL+NP + Q +C AGV + I L ++ Sbjct: 133 LIITDHHALQHQIPQADALINPQQETCSFPQKSICGAGVAWYFCNAIKIALGKN------ 186 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 F LL LL VA+AT+ DV+PL +N+ +V KGL + + + L + +A+ Sbjct: 187 FSLLELLKYVAIATIADVMPLCQVNKLFVKKGLELLKDSHSMQDSLLKSLLKGRD-FSAQ 245 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 ++ + I P +N+ GR+ ++ + ++ E+ + L LNQ R+ M + Sbjct: 246 DVAFSITPLLNSAGRMKDARVVCEFFLATKKDEIAAHFLALKKLNQMRKDQTQQMESEMF 305 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 ++ + ++ + W+ G++G+LAA+L ++ +P+F + +E G GSGRS Sbjct: 306 ------AHFLESENCVLAYKESWNEGLLGILAAKLSKEKQKPAFVFTQKE-GCLKGSGRS 358 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 DI + E ++ GGH+ A G+ ++ D F + + P Sbjct: 359 DGKIDI--FQTLLPHERNFLRFGGHSEAVGICIQEDKIPWFMDLFSRECFVLSP-----K 411 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535 ++ G + ++ L+++L PYG GNP P F K++ ++ H ++ FE Sbjct: 412 PNEVLGEICLQDIDGELLEILRRFEPYGQGNPPPQFLIRGAKIKESKIFKELHQKLEFEH 471 Query: 536 QDSETLQAIAFRVYGTPLGEFLMQ 559 Q + A++F ++ Sbjct: 472 Q----ISALSFFCKEFYKENEVID 491 >gi|145631269|ref|ZP_01787042.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae R3021] gi|144983196|gb|EDJ90691.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae R3021] Length = 412 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 15/416 (3%) Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLV 245 PA A+VNPN L GV F +++ + R+ + LLDLV Sbjct: 1 MPPADAIVNPNLSQCHFPSKSLAGVGVAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLV 60 Query: 246 ALATVCDVVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNIS-SPITAENLGYMIGP 303 AL T+ DVVPL NR +GLM R + G+ AL E N + T+ +LG+ IGP Sbjct: 61 ALGTIADVVPLDQNNRILAYQGLMRIRARHCRLGIIALAEVANRNVEQFTSSDLGFCIGP 120 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 +NA GR+ ++G LL++++ + LA+ LD LNQ R+ +E+ M +A Sbjct: 121 RLNAAGRLDNMSIGVELLLANEMSKARELALDLDQLNQTRKEIEAGMKLEAIKICQNLTA 180 Query: 364 DIQQASV-IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 ++ I + WH G++G++++R+K+++ RP A + + +G GS RSIEG + Sbjct: 181 LFKELPYGITLYQPDWHQGVLGIVSSRIKDQYHRPVIAFAQDSEGILKGSARSIEGLHMR 240 Query: 423 KMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 ++ +++K GGHAMAAGL++ +F F + + + V D Sbjct: 241 DVLERIHSQHPNMILKFGGHAMAAGLSIREEHFDDFQHIFNQTVADWLDEEHLQGVIWTD 300 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFES-QD 537 G LN++ N+ ++++S G +G G P P F K+ R + HL+M E Q Sbjct: 301 GELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKILDQRAIGQNKNHLKMLLEPKQG 359 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 L AIAF + + + K+ + L +N +RG++ QL V P++ Sbjct: 360 GGLLDAIAFNIDTRLYPDLSI----KQARLAYKLDINEFRGNRSLQLLVDYIEPID 411 >gi|288818599|ref|YP_003432947.1| single-strand-DNA-specific exonuclease [Hydrogenobacter thermophilus TK-6] gi|288787999|dbj|BAI69746.1| single-strand-DNA-specific exonuclease [Hydrogenobacter thermophilus TK-6] gi|308752190|gb|ADO45673.1| single-stranded-DNA-specific exonuclease RecJ [Hydrogenobacter thermophilus TK-6] Length = 550 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 136/576 (23%), Positives = 258/576 (44%), Gaps = 47/576 (8%) Query: 11 CSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMP 70 ISG W+ L R + +K+ ++A++L NRN+ + +R L+P Sbjct: 2 KGISGRDWLILSHLIKPQR--QMEEKYG--YLIAQILANRNLDD----KIFDNRLRNLLP 53 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 ++ + ++A +I +++ ++I+I+GDYDVDG A++ FL +P R Sbjct: 54 Y-HLIPNIEQAVEKIARSVKEGKRIVIYGDYDVDGVTGSAILYDFLKKAGAKVYAVLPTR 112 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 GYG L+E F ++ AQL+IT+D G+T+ + L + I+ IV+DHH E Sbjct: 113 QT-GYGLRKELVETF-SKYAQLLITIDNGTTAIEEL---KDPPIETIVVDHHNPHEELPN 167 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 A + + + + + F ++ + R L D D+ L L ++ T+ Sbjct: 168 ALVVNPKIDEGLPNELKEISSVALSFYLVARLRRELEVD------VDVRDYLYLTSIGTI 221 Query: 251 CDVVPLIGLNRAYVVKGLMVAR------RQGNPGLKALIERVNISSPITAENLGYMIGPS 304 DV+PL LNR V G+ + G+K L+E + I +T+ ++ + I P Sbjct: 222 ADVMPLNPLNRILVSNGIRMLNYIASGGETKAYGIKVLMESIGIRGEVTSRDIAFSIAPR 281 Query: 305 INAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 +NA GR+ + ++ LL+S D M K++ N+ R+ + + E+A +++ ++ Sbjct: 282 LNAPGRVSKPSIAMNLLLSKDENTARMWLKKVEEANEQRKYISNVAFEKAMSEITSK--- 338 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + + +VV W G+ G++A +L +PS S S R +EG ++ + Sbjct: 339 -KDRNFLVVRMGEWASGVAGIVAGKLSSMLSKPSAVFS-VGKDLATASVRGVEGINVYEG 396 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + + ++ GGH AAGLT+ + + + I P ID +L+ Sbjct: 397 LKKL--SHMFLRWGGHTSAAGLTIRKEHLDEFEMMIDQVFSEIKGEE---PRLYIDMILD 451 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI 544 + V+ ++ L+ PYG G P PVF +++ + + + ++Q + I Sbjct: 452 PTHVDEGVLRSLKMLEPYGEGFPQPVFVSEPLRIEK---IEENNGRWLLKAQPN-----I 503 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCV---NYWR 577 F Y + + + V + N++ Sbjct: 504 NFFAYNVQWRKNIENILFSKRRVVYTVDTRRSNFFN 539 >gi|330685048|gb|EGG96720.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis VCU121] Length = 404 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 123/416 (29%), Positives = 215/416 (51%), Gaps = 19/416 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S + W E I+ +I Q+ + I+ ++L ++N+ + + LN + D Sbjct: 4 SKYNWNLNNPTEYISD--SIAQRLKLSPIIKKILESKNIIEEEDIQRTLNG--VDINHDS 59 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L+D DKA RI QAI +E+I+++GDYD DG S +++ L YIP+R Sbjct: 60 SLLSDIDKAIERINQAIDKNERILVYGDYDADGVTSTTILVHTLQKLGAQVGWYIPNRFT 119 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + +EG LIITVD G + ++ A + G+DVIV DHH++ AY Sbjct: 120 EGYGPNELAFQNAYDEGVSLIITVDNGIQGHAEIKMAQDLGVDVIVTDHHEIGRTLPEAY 179 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+P + +LC AGV + + + + A+ T+ D Sbjct: 180 AIVHPMHPEFDYPFKYLCGAGVAYKLAQALLENVPN-----------YFKAYAAIGTIAD 228 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 +V L NR+ V GL V +KAL+ + + + IT E +G++IGP +NA GR+ Sbjct: 229 LVSLTDENRSIVQHGLKVMNDSCPVPVKALLNQASYNDEITEETIGFIIGPRLNAVGRLE 288 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 +++L + LL+SD E E LA +++ NQ R+ + + + E+A + + Q ++ Sbjct: 289 DASLAAELLMSDSEDEAEFLAEQVEHFNQERKDIVAQITEEAL--AMAENYVSQGHQFLL 346 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427 + + WH G++G++A+++ E + P+ ++ E GS RSIE + ++++ Sbjct: 347 LAKEDWHEGVLGIVASKIVETYSLPTLILNIDYEQNHAKGSARSIEQVSMFEILNA 402 >gi|223986335|ref|ZP_03636344.1| hypothetical protein HOLDEFILI_03654 [Holdemania filiformis DSM 12042] gi|223961684|gb|EEF66187.1| hypothetical protein HOLDEFILI_03654 [Holdemania filiformis DSM 12042] Length = 534 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 138/560 (24%), Positives = 239/560 (42%), Gaps = 44/560 (7%) Query: 31 LAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY 90 I Q + ++ A+VL R + + LN + L P + + +R+ A Sbjct: 13 QRIRQDFGVSELCAKVLACRCQDDEQIRQVLNQDL-TLHPCQS--PELTQILKRLDTARQ 69 Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 EK++I GDYD DG + A+M L + + YIP R+ +GYG + ++ ++G Sbjct: 70 RHEKVLIAGDYDADGLCATAIMKEALDRAGIVSGFYIPHRLNEGYGLSAQTVQLARDKGY 129 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 LI+TVD G ++ AL A G++VIV DHH + +E L++P R+ + C Sbjct: 130 SLILTVDNGVAAHPALTLAKQLGVEVIVTDHHVI-QQEPECLTLLHPTRMG--KPWQYCC 186 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 AGV + + + ++ L A+AT+ D++PL NR V GL Sbjct: 187 GAGVALQLSMAMTGPRKRPIM------------LAAIATIADMMPLWEENRILVRLGLKY 234 Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGSRLLISDDSQ 327 + ++AL + T + + Y I P +NA GR+ E N R L+ +D Sbjct: 235 LNERQFTAIEALND--KKCELWTEKEVAYQIVPKLNAAGRLAELCNINNIVRYLLLEDPA 292 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 ++E A ++ +NQ RR M M + A ++ + + V+ +H GI+GL+A Sbjct: 293 QIESAAAQIRQINQKRRQMSDKMTKTAMEQMHPE------DAFHVIADKEFHEGIIGLVA 346 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447 R+ + RP+ ++ G GS RS+ G DI G L++ GGHA AAG+ Sbjct: 347 GRIMNETHRPTLVLAPSAQG-YKGSVRSVPGLDIQVFFEDL--RGYLIQFGGHAQAAGIE 403 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 V L + + P ++ ++A +N+ + L+ P+G Sbjct: 404 VAADQLEPLRQAILAKM-ETLDLALPEPTLQV-LPVSAQEINLTALHELDQLAPFGQQFE 461 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 F + + + + + + + AI+F Sbjct: 462 PVTFEVSGLTILQYAKMKEVYPKWQ-TTNGVDLIDAISFNR---------ELDNPHPASW 511 Query: 568 TGHLCVNYWRGSKRCQLRVL 587 G L +N +RG ++C + V Sbjct: 512 IGQLQINRFRGREKCSILVE 531 >gi|17229481|ref|NP_486029.1| single-strand-DNA-specific exonuclease [Nostoc sp. PCC 7120] gi|17131079|dbj|BAB73688.1| single-strand-DNA-specific exonuclease [Nostoc sp. PCC 7120] Length = 779 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 156/619 (25%), Positives = 257/619 (41%), Gaps = 64/619 (10%) Query: 17 RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMP 70 +W+ ++ + +K+ I A++L R V + F+N Sbjct: 2 QWIITATEQPPEWFIQAVKKYVSASKGI--YAAQLLWQRGVKEESQLAAFINFKNYQPAS 59 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127 + A R+ QA EKI I+GD+D DG S A++ L N YI Sbjct: 60 AFEFAQEMQLAVARLQQARNKGEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYI 119 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R+ + +G N S + +G LI+T D GST+ D + YA GIDVIV DHH + +E Sbjct: 120 PNRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIYAQKLGIDVIVTDHHTLPTE 179 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 P A++NP L + HL GV + ++ +Y+ L + P L LLDLVA+ Sbjct: 180 RPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNP----LEDLLDLVAV 235 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGY 299 + D+V L G R G+ + + PG+ L+E + ++ + Sbjct: 236 GLIADLVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGD-RPTDISF 294 Query: 300 MIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +GP INA R G+++ LL S D LA ++ N R+ ++ + Q K+ Sbjct: 295 GLGPRINAVSRIQGDASFCVELLTSRDINRCHQLAEVTELANTRRKSLQKDVQAQVTQKL 354 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--------- 409 D+ SVIV+E +W G++GL+A ++ ++ GRP+ +S E G Sbjct: 355 TQL--DLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGLGNEEDSSPSPIP 412 Query: 410 ------IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 GS RS+ D+ ++V + +L + GGH AAGL++ N + Sbjct: 413 NLQLLARGSARSVNSVDLYQLVK--HQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQ 470 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ---- 519 + ++ TP + D V+ + + L L+ P G GNP P N + Sbjct: 471 LRQTLGSVNLTPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWH 530 Query: 520 --SIRVVNLA--HLQMTF---ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 +++ F + I + Y L R L Sbjct: 531 RNQQDWQGKKVQYIKAEFDIRDDSSKNPFPGIWWGHYKDELP-------IGRCDCIAELD 583 Query: 573 VNYWRGSKRCQLRVLDASP 591 N + KR ++R++ P Sbjct: 584 YNTF--KKRYEIRLIALRP 600 >gi|149183945|ref|ZP_01862328.1| single-stranded-DNA-specific exonuclease [Bacillus sp. SG-1] gi|148848348|gb|EDL62615.1| single-stranded-DNA-specific exonuclease [Bacillus sp. SG-1] Length = 355 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 16/357 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S RW+ G + + +K I IV+++L NR + I+ A+ FL DP Sbjct: 4 SKSRWLVK--DHGETNSKKLQEKLNISPIVSKLLANRGIHDIEEARTFLYGE-EQPFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 ++ D DKA R+ +AI E I+IFGDYD DG +S + MM+ L A+ YIP+R Sbjct: 61 YLMMDMDKAVERVKKAIEYGEAILIFGDYDADGVSSTSTMMQTLLDLGAEAHFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + EG LIITVD G + Q A G+D+I+ DHH+ E A Sbjct: 121 EGYGPNENAFRWAAGEGFSLIITVDTGIAALKEAQLAKELGVDLIITDHHEPGPELPEAL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P R L GV F +Y L + LLDL A+ T+ D Sbjct: 181 AILHPKREGSTYPFTDLAGVGVAFKFAHALYGSLPE-----------HLLDLAAIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRI 311 +VPL G NRA KGL+ R PG+ AL + N IT E +G+ I P INA GR+ Sbjct: 230 LVPLKGENRAIAKKGLVKLRTSKRPGVIALCKAANAQMNEITEETVGFAIAPRINAIGRL 289 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQA 368 G+++ L++S+D +E +A +++ +N RR + + M ++A V + + Sbjct: 290 GDADPAVDLMLSEDMEESMAIAQEINGINDERRSIVTEMTQEAIEMVENEFPLTHNS 346 >gi|75907048|ref|YP_321344.1| exonuclease RecJ [Anabaena variabilis ATCC 29413] gi|75700773|gb|ABA20449.1| putative exonuclease, RecJ-like protein [Anabaena variabilis ATCC 29413] Length = 772 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 151/612 (24%), Positives = 254/612 (41%), Gaps = 57/612 (9%) Query: 17 RWVSLLGQEGINRALAITQKH-----AIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMP 70 +W+ ++ + QK+ I A++L R + + F+N Sbjct: 2 QWIITATEQPPEWFIQAVQKYAATSKGI--YAAQLLWQRGIKQESQLAAFINFKTYQPAS 59 Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYI 127 + A R+ QA EKI I+GD+D DG + A++ L + YI Sbjct: 60 AFEFGQEIQLAVARLQQARNKGEKIAIWGDFDADGITATAVLWDGLGQFFQQHQQLDYYI 119 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R+ + +G N + + +G LI+T D GST+ D + YA GID+IV DHH + E Sbjct: 120 PNRLKESHGLNEAGIANLAKQGCTLIVTCDTGSTNIDEIIYAQKLGIDIIVTDHHTLPPE 179 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 P A++NP L + HL GV + ++ +Y+ L + P L LLDLVA+ Sbjct: 180 RPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNP----LEDLLDLVAV 235 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGY 299 + D+V L G R G+ + + PG+ L+E S ++ + Sbjct: 236 GLIADLVQLSGDCRYLAQLGIQRLQADFQQPPAARRRPGVGRLLELCQRSGD-RPTDISF 294 Query: 300 MIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +GP INA R G+++ LL S D LA ++ N R+ ++ + Q K+ Sbjct: 295 GLGPRINAVSRIQGDASFCVELLTSRDINRCHQLAEVTELANTRRKSLQKDVQAQVTQKL 354 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE--------DGKGI 410 D+ SVIV+E +W G++GL+A ++ ++ GRP+ +S E Sbjct: 355 TQL--DLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGLENEQDSSPSLAR 412 Query: 411 GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 GS RS+ D+ ++V + +L + GGH AAGL++ N + + + Sbjct: 413 GSARSVNSVDLYQLVK--HQAHLLHRFGGHPFAAGLSLLAQNIPLFTQAINQQLRQTLGS 470 Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ------SIRVV 524 + TP + D + + + L L+ P G GNP P N + Sbjct: 471 VNLTPTVQADIAVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDSQ 530 Query: 525 NLA--HLQMTF---ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 +++ F + I + Y L R L N + Sbjct: 531 GKKVQYIKAEFDIRDDSSKNPFPGIWWGHYKDELP-------IGRCDCIAELDYNTF--K 581 Query: 580 KRCQLRVLDASP 591 KR ++R++ P Sbjct: 582 KRYEIRLIAVRP 593 >gi|224418241|ref|ZP_03656247.1| putative single-stranded-DNA-specific exonuclease [Helicobacter canadensis MIT 98-5491] gi|253827566|ref|ZP_04870451.1| RecJ exonuclease [Helicobacter canadensis MIT 98-5491] gi|313141774|ref|ZP_07803967.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter canadensis MIT 98-5491] gi|253510972|gb|EES89631.1| RecJ exonuclease [Helicobacter canadensis MIT 98-5491] gi|313130805|gb|EFR48422.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter canadensis MIT 98-5491] Length = 526 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 156/537 (29%), Positives = 257/537 (47%), Gaps = 35/537 (6%) Query: 52 VSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL 111 +S A + LN ++ L P P L + + A++IVQAI +KI + GDYDVDG S A+ Sbjct: 21 ISRFSAMEILN--LQNL-PLPSALNNLPQIAKKIVQAIKEQKKIAVVGDYDVDGVVSCAI 77 Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171 + F + + IP+R DGYG + +L+EK +IIT D G + +A + Sbjct: 78 LQDFFKRIPYSILVVIPNRFSDGYGISSALVEKI---DCDMIITADNGINAIEAAEVCKK 134 Query: 172 QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK 231 +GI++I+ DHH E +P + NP + + +C A V + + I + + Sbjct: 135 KGIELIITDHH-TPQEILPDALICNPKISPN-FPESEICGACVAWYLCAAIKQEMNLK-- 190 Query: 232 VPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP 291 ++ LDL+ALA V DV+PL G+N + KGL + + L L E P Sbjct: 191 ----VSMVEFLDLLALAIVSDVMPLRGMNWVLLKKGLEILGQNRRVSLSLLREHFK-KYP 245 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 + A+ LGY P +N GRIG + L + LI +DS+ + +L LN+ R+ M++ + Sbjct: 246 LNAQLLGYYFVPLLNCAGRIGSAELAYQFLIQNDSKAAYQILEELLELNRQRKAMQNQVF 305 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 +A+ + Q ++ + +VV W+ G++G++AA+L E+F +PS ++ E GK G Sbjct: 306 LEAKEDFMHQ-ENFEALPFVVVYNPTWNEGVIGIVAAKLCEEFAKPSIVLTNNE-GKLKG 363 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S RS I + + A + L GGH AAGL + + NF + I Sbjct: 364 SMRSNG---IDCVETLAKHKEFLENFGGHFKAAGLGLLQENFEVFKEALMNM--EICSEQ 418 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQM 531 G+L +N+ + +L PYG GN P FA K+ S+++ + ++ Sbjct: 419 KIQNDVL--GILPLQKINLEIFRILNEFEPYGEGNAMPKFATR-AKVLSVKLFGDNNSKI 475 Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 E QD T +A+ F E L + + + L + + S L++ D Sbjct: 476 LLE-QDGITKEALKF-------SENLQGYENQEIELIYSLQWDRF--SSNVILKIED 522 >gi|195953709|ref|YP_002121999.1| single-stranded-DNA-specific exonuclease RecJ [Hydrogenobaculum sp. Y04AAS1] gi|195933321|gb|ACG58021.1| single-stranded-DNA-specific exonuclease RecJ [Hydrogenobaculum sp. Y04AAS1] Length = 557 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 143/546 (26%), Positives = 263/546 (48%), Gaps = 51/546 (9%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L RN++I+ L+ ++ +P +L + ++A R+V+AI + E+I+++GDYDVDG Sbjct: 32 LLGLRNINIED----LDVKLKN-IPSFELLPNINQAVDRLVKAIKSKERILLYGDYDVDG 86 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S +M FL N +P+R GYG + +++ F ++ + L++T+D G+T+ Sbjct: 87 VTSTTIMYDFLKQIGANVVPVLPNRNS-GYGLSKEIIDLF-SKYSNLVLTLDNGTTAVHE 144 Query: 166 LQYATNQ-GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 +YA + +D I++DHH + E A++ L+ + LC AG+ F ++ + R Sbjct: 145 TKYAKEKYNMDFIILDHHMINHGEHLPEAILVNPNLEKDNKLKGLCTAGLSFYMVGALRR 204 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 L D FD+ LDLVA+ TV DV+P+ LNR + KGL + + + + Sbjct: 205 ALGVD------FDIKKYLDLVAVGTVADVMPINSLNRVLISKGLELINKIKDMPWDMATD 258 Query: 285 ----------------RVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 + ITA+++G+ I P INA GRI + + +LL + ++ Sbjct: 259 FGKAGMKALINYISKTQNGNQKIITAKDIGFSIAPRINAAGRIRKPQIALKLLAEKNYEK 318 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 +LA L+ +NQ+RR + + M ++A + +++ WH G++G++A Sbjct: 319 ARILAEDLNKINQDRRRISNEMFKEAYSLA-----SQSNDDFVILGKQTWHHGVLGIVAG 373 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448 RL K +P+ +GS RS+EG D+ K++S K GGHA AAG+T+ Sbjct: 374 RLSNKLKKPTGIFHINNTH-AVGSIRSVEGLDVHKLLSNLSYM--FDKWGGHAGAAGVTI 430 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 ++ F + V ++D L +V+ + +++E PYG NP Sbjct: 431 KKEYFDAFRQKINDLLKRESFEVD--RVLEVDMELPLRSVDKRIGEIIEKLSPYGELNPE 488 Query: 509 PVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P+F + + S + V +++ +D + ++ F F+ G+R+ Sbjct: 489 PIFISQDITVSSISSKGVG---VRVKTLDKD-KEVELSCF-----EEELFVKLRPGQRLK 539 Query: 567 VTGHLC 572 ++ Sbjct: 540 AIYNID 545 >gi|241858964|ref|XP_002416167.1| single-stranded-DNA-specific exonuclease RecJ, putative [Ixodes scapularis] gi|215510381|gb|EEC19834.1| single-stranded-DNA-specific exonuclease RecJ, putative [Ixodes scapularis] Length = 415 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 140/426 (32%), Positives = 211/426 (49%), Gaps = 20/426 (4%) Query: 171 NQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN 230 G+ V+V DHH E A A+VNPN+ +L GV+F +++ + LRQ Sbjct: 1 MAGMKVLVTDHHLPGDELPDALAIVNPNQPGCEFPSKNLAGVGVIFYLMLALRAELRQRG 60 Query: 231 KVPLN--FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG-LKALIERVN 287 N L L DLVAL TV DVV L NR V +GL R+ L+AL + Sbjct: 61 VYEANAGPRLNELADLVALGTVADVVSLDANNRLIVTQGLERMRKGQMQAGLRALFQVAG 120 Query: 288 ISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 +A +LG+ +GP INA GR+ + LG R LI+DD E LA +L+ +NQ+RR + Sbjct: 121 RDPRQASAFDLGFALGPRINAAGRLADMALGIRCLITDDEDEAANLARELEDMNQDRRSI 180 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 E +M E+A + + ++ + V WH GIVGL+A+RLKEK+ RP+ A + ++ Sbjct: 181 EQSMREEALRAA--ELAEPDTSATVCVFHPEWHQGIVGLVASRLKEKYWRPTLAFAQGDE 238 Query: 407 GKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 G+ GSGRSI + + G+++K GGHAMAAGLT+E N+ F++ Sbjct: 239 GEIKGSGRSIPDVHLRDALDLVSKRYPGLILKFGGHAMAAGLTIEEDNYDVFVQAFEEAV 298 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + P+ + DG L +NI + +L+ +GAG P PVF N ++ R++ Sbjct: 299 QELTGRYQFDPIIETDGSLEPEHINITVAGLLQK-QVWGAGFPAPVFR-DNFFVRQQRLL 356 Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584 HL+++ E ++ E AI F + + L N W G+ Q Sbjct: 357 KNKHLKLSLE-RNGEYFDAIWFNRDTL---------LPENIEAAYRLDQNEWNGNVSVQF 406 Query: 585 RVLDAS 590 + A Sbjct: 407 IIEYAQ 412 >gi|32266850|ref|NP_860882.1| single-stranded DNA-specific exonuclease [Helicobacter hepaticus ATCC 51449] gi|32262902|gb|AAP77948.1| single-stranded DNA-specific exonuclease [Helicobacter hepaticus ATCC 51449] Length = 522 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 145/528 (27%), Positives = 254/528 (48%), Gaps = 39/528 (7%) Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-N 122 ++R L P P LT A+++V+ + ++I++ GDYD DG + ALM RF Sbjct: 24 TLRDL-PKPDSLTHALTGAQKVVECMNKGQEILVVGDYDADGICASALMCRFFERLGYEK 82 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 + IP R +DGYG + +L+EK+ N A ++++VD G ++ A + I I+ DHH Sbjct: 83 FRLVIPHRFIDGYGVSAALLEKYAN-NASIVVSVDNGINAFCAGDWCKEHNIVFIITDHH 141 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 + A +++P D Q +C A V + I +IL D+ L Sbjct: 142 TPANTLPQADVIIDPYMADCSFIQKSICGAVVAWYFCAAIKQILGAS------IDMGEFL 195 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 + +ALA++ D++PL+G+NR V KG+ R +P + ++ I AENL + I Sbjct: 196 EYLALASIADIMPLVGINRILVKKGIERLRNSSSPLALLIRSKLKT---INAENLAFSIV 252 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +N GR+ +NL L++ + + KL LN R+ ++S +L A Q Sbjct: 253 PLLNCAGRMANANLALDFLLAPSVVDALRIYDKLFELNVQRKSVQSEILSLA------QM 306 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 +I+ +IV G+ WH G++G++A+ L ++ G+ +F +S+ +G GSGRS G ++ Sbjct: 307 PNIESEHIIVSYGEDWHEGVLGIVASSLAQEKGKSAFVLSY-SNGILKGSGRSFGGLNL- 364 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + S L++ GGH+ A G+++E + + I GV Sbjct: 365 -IASITPLSKHLLRFGGHSGAVGISLELEQLEGFINALESAL-----IFDDIKENAILGV 418 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ-DSE 539 + ++++N L+ + E P+G GNP P+F N ++QS++ + HL + + Sbjct: 419 IESASINEELLAICERFEPFGEGNPKPIFLCENLQIQSLKPLGRDKKHLSYILNDKSNGV 478 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQL 584 L+AI F V M+ G+ +V L + + + Q Sbjct: 479 LLEAIEFFVPQ-------MREIGQSGNVQFELMRDDYNNKVKMKILQF 519 >gi|282896574|ref|ZP_06304592.1| RecJ exonuclease [Raphidiopsis brookii D9] gi|281198516|gb|EFA73399.1| RecJ exonuclease [Raphidiopsis brookii D9] Length = 796 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 154/620 (24%), Positives = 263/620 (42%), Gaps = 66/620 (10%) Query: 17 RWVSLLGQEGINRAL-AITQKHAI-------PDIVARVLVNRNVSID-YAKDFLNPSIRL 67 +W+ L E L A+ +++ + + VA++L R + + +FL+ + Sbjct: 2 KWILLESIEIPQDFLQAVQKEYHVRHGSKSKANFVAQILWQRGIRTELELVNFLD--FKN 59 Query: 68 LMP-DPLIL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN- 124 P P + + A R+ A EK+ I+GD+D DG S AL+ L Sbjct: 60 YRPASPFEFGEEMNLAVNRLKAAAILKEKVGIWGDFDADGITSTALLWDGLGEFFPQYEQ 119 Query: 125 --MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 YIP+R+ + +G N + +E+ +G +LI+T D GST+ D + YA GID+IV DHH Sbjct: 120 LTYYIPNRLTESHGLNFAGIERLAQQGCRLIVTCDTGSTNIDEIIYAQKLGIDLIVTDHH 179 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 + +E P A++NP L + HL V + ++ +Y L + P L LL Sbjct: 180 TLPTERPPVTAIINPRYLPETHSLFHLSGVAVAYKLVEALYETLPDIPQNP----LEDLL 235 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGL--------MVARRQGNPGLKALIERVNISSPITA 294 DLVA+ + D+V L G R G+ PG+K L+E + A Sbjct: 236 DLVAIGLIADLVQLKGDCRYLAQIGIDKLHQESKKDISHSRRPGIKKLLELCRKNGD-RA 294 Query: 295 ENLGYMIGPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 ++ + +GP INA R G+ + LL S D + LA + ++ N R+ ++ + EQ Sbjct: 295 MDISFGLGPRINAVSRIHGDGSFCVELLTSRDIKRCCQLAQETELANSRRKSLQKDVQEQ 354 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI--- 410 A K+ D+ +VIV+ +W G++GL+A ++ ++ G+P+ +S + G Sbjct: 355 AIKKLGKL--DLSTTNVIVLVDSQWPGGVLGLVAGQIAQETGKPTILLSTDPLGTEKAES 412 Query: 411 ---------GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS RSI D+ ++V + +L + GGH AAGL++ N D Sbjct: 413 LDSKTNLARGSARSINSIDLYQLVQK--QAHLLHRFGGHPFAAGLSLSVENIELFTDAIN 470 Query: 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSI 521 + V + + D V+ + + L L+ P G GNP P N ++I Sbjct: 471 QQFRLSVGGINLISKMQADLVVTVADLGRELFLELKLLEPCGMGNPVPKLLIKNCWFENI 530 Query: 522 ----------RVVNLAHLQMTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 + Q S+ I + L + Sbjct: 531 SYHNLQDSRGNKIQYNKTQFVLRDDSSQKGFPGIWWGHNKNDLPR-------GKCDCIME 583 Query: 571 LCVNYWRGSKRCQLRVLDAS 590 + N + ++R++D Sbjct: 584 IDFN--MLREEHEVRLIDVR 601 >gi|237752977|ref|ZP_04583457.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter winghamensis ATCC BAA-430] gi|229375244|gb|EEO25335.1| single-stranded-DNA-specific exonuclease RecJ [Helicobacter winghamensis ATCC BAA-430] Length = 533 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 148/545 (27%), Positives = 251/545 (46%), Gaps = 37/545 (6%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +L R + K S++ L P P L + + A RI AI ++I++ GDYDVDG Sbjct: 24 LLKQR-FDKEEIK-----SLKDL-PKPEKLKNLLEIAGRIKLAIDTKKRIVVVGDYDVDG 76 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 S A++ F + IP+R DGYG + S++ + +IITVD G + +A Sbjct: 77 VVSCAILHAFFKKLQYPILVEIPNRFSDGYGLSKSVISRL---DCDVIITVDNGINAIEA 133 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 + N+GI++++ DHH E +P + NP D + +C A V + + + ++ Sbjct: 134 AEICKNRGIELLITDHH-TPQEILPNALICNPKLSKD-FPEPEICGACVAWYLCAALKQV 191 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 + D + LDL+ALA V DV+PL+G+NR + KGL V + L ER Sbjct: 192 MGID------VAMGDFLDLLALAIVSDVMPLLGMNRVLLKKGLEVLKSSQRTAFIHLKER 245 Query: 286 VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 I + + Y I P +N GR+ + L R LI++D + + L KL +N R+ Sbjct: 246 F-CKYKIDGQLISYYIAPLLNCAGRMDSAMLAYRFLITEDKVDSKKLLEKLLSINTERKE 304 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 +++ + +A+ Q + Q+ VI+V WH GIVG++AARL E+F +P +S ++ Sbjct: 305 LQNIIYTEAKESFCKQ-KNYQKLPVILVYSPSWHEGIVGIIAARLSEEFCKPCIVLS-QK 362 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 +G GS RS M LV GGH AAGL++++ + Sbjct: 363 NGILKGSMRSSYTD---CMEVLESTREHLVAFGGHFGAAGLSLKKESLEAFKKAL--MCF 417 Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525 N + + + G L S V M++S P+G N P F K+ ++R Sbjct: 418 NYKQERMESNFSEALGYLPLSVVGKEFFAMIQSFEPFGCANAIPKFYTK-AKIVNVRYFG 476 Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 H ++ + + +A+ F L +++ + + +L + +R + L Sbjct: 477 EKHSRIILK-EGITKCEAVVFNKD-------LREAQDREIACLYYLQWDNYR--QDVVLH 526 Query: 586 VLDAS 590 + + Sbjct: 527 LEHYA 531 >gi|119510117|ref|ZP_01629256.1| single-strand-DNA-specific exonuclease [Nodularia spumigena CCY9414] gi|119465178|gb|EAW46076.1| single-strand-DNA-specific exonuclease [Nodularia spumigena CCY9414] Length = 780 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 147/611 (24%), Positives = 252/611 (41%), Gaps = 58/611 (9%) Query: 17 RWVSLLGQEGINRALAITQKH---AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL 73 +W+ ++ + + I +++ ++ A++L R + P Sbjct: 2 QWIIETPEKPPDWFIQIVKQYTPASMGLYAAQLLWQRGIKDKQKLAAFTDYKTYQPASPF 61 Query: 74 IL-TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC---SVNANMYIPD 129 + A R+ QA N++KI I+GD+D DG + A++ L + YIP+ Sbjct: 62 EFGAEMQLAMERLQQARNNNDKIAIWGDFDADGITATAVLWDGLGQFFEQNTQLTYYIPN 121 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 R+ + +G N ++ +G +LI+T D GST+ + + YA GIDVIV DHH + E Sbjct: 122 RLKESHGLNYPGIDNLQKQGCKLIVTCDTGSTNINEIIYAQKLGIDVIVTDHHTLPEERP 181 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 P A++NP L H V F ++ +Y L + P L LLDLVA+ Sbjct: 182 PVTAIINPRYLPSEHQLFHFSGVAVAFKLIEALYLTLPNVPQNP----LTDLLDLVAVGL 237 Query: 250 VCDVVPLIGLNRAYVVKGLMVAR--------RQGNPGLKALIERVNISSPITAENLGYMI 301 + D+V L G R G+ + + PG+ L+E + ++ + + Sbjct: 238 IADLVQLSGDCRYLAQLGIQKLQADFQQPVTARRRPGIGRLLELCQKNGD-RPTDISFGL 296 Query: 302 GPSINAGGR-IGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 GP INA R G+++ LL S D + LA ++ N R+ ++ + Q K+ Sbjct: 297 GPRINAVSRIQGDASFCVELLTSRDLKHCHQLAEFTELANTRRKSVQKDVQAQVAQKLTQ 356 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK------------ 408 D+ SVIV+E +W G++GL+A ++ ++ GRP+ +S EE + Sbjct: 357 L--DLSTTSVIVLEDSQWPAGVLGLVAGQIAQETGRPTILLSTEERTQGTTPTPYSPLPT 414 Query: 409 ---GIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 GS RS+ D+ ++V + +L GGH AAGL++ N D + Sbjct: 415 PLLARGSARSVNFVDLYQLVKK--QAHLLNSFGGHPFAAGLSLLPENIPLFTDAINQQLR 472 Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR--- 522 + TP + D + + + L L+ P G GNP P N ++ R Sbjct: 473 QTLGGTTLTPTVQADLTVTVADLGKELFLELKLLEPCGMGNPVPKLLIKNCWFENSRHRN 532 Query: 523 ---VVNLA--HLQMTFESQD---SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 +++ F +D + I + Y L R L N Sbjct: 533 QQDWKGKKVQYIKTDFNIRDESTNSPFPGIWWGHYKDELPL-------GRCDCIAELDYN 585 Query: 575 YWRGSKRCQLR 585 + +L Sbjct: 586 TFNKRYEIRLI 596 >gi|167004725|ref|ZP_02270483.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter jejuni subsp. jejuni 81-176] Length = 453 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 122/480 (25%), Positives = 233/480 (48%), Gaps = 30/480 (6%) Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171 M F + + IP+R DGYG N ++ + LIITVD G + +A + Sbjct: 1 MAEFFDDIGFDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAALEAAKLCKE 57 Query: 172 QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNK 231 + ID+I+ DHH + A+A++NP + D + +C A V + ++ + + + Sbjct: 58 KNIDLIITDHHMPQDVLPDAFAIINPKQKDCDFPEIEICGAQVAWYLIAALKEVCKLK-- 115 Query: 232 VPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP 291 +D+ L+L+A+A V D++ L LNRA V +G+ + +A+ + Sbjct: 116 ----YDMCKFLELLAIAIVADMMELRDLNRALVRRGIDHINKSKRAAFRAI-KHYYQKDK 170 Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 +N+G++I P IN+ GR+ ++++ L + D + ++ N++R+ E + Sbjct: 171 FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFNKALEYLEQIVSFNESRKDEEKQLF 230 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 E + ++ + S IVV G WH G++G++A+RL + F +P+F S E+ G Sbjct: 231 EDSLNQI------DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNEEHL-KG 283 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPAL 471 S RS+ DI ++S IL GGH AAG+++ NF + + +K I + Sbjct: 284 SARSVGKIDILALISK--TNSILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISESE 341 Query: 472 ITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHL 529 +I G+L S ++ ++++LES P+G NP P F N +++ +++ HL Sbjct: 342 FL-DTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFFVLENLCVKNKKLLGKDEKHL 400 Query: 530 QMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ +++++T++A+ F P + + + G + N +RG Q + + Sbjct: 401 KLVL-TKENKTIEALFFNFDKEP-------ELNQNISLLGSISKNEFRGMVTPQFVIKEI 452 >gi|224438087|ref|ZP_03659026.1| single-stranded DNA-specific exonuclease [Helicobacter cinaedi CCUG 18818] gi|313144531|ref|ZP_07806724.1| single-stranded DNA-specific exonuclease [Helicobacter cinaedi CCUG 18818] gi|313129562|gb|EFR47179.1| single-stranded DNA-specific exonuclease [Helicobacter cinaedi CCUG 18818] Length = 530 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 148/537 (27%), Positives = 245/537 (45%), Gaps = 39/537 (7%) Query: 53 SIDYAKDFL-----NPSIRLL--MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 + FL IR L +P P L + + A+ I QA+ + +I++ GDYD DG Sbjct: 10 TKQDILHFLQSRDLECGIRTLRDLPTPQNLNNTESGAKIITQAMERNNEILVVGDYDADG 69 Query: 106 AASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 + A++ F + + IP R DGYG + +L+EK A ++++VD G T++ Sbjct: 70 VCASAIISLFFKALEYQHFRLIIPHRFEDGYGVSAALLEKNAQ-NAAVVVSVDNGITAFC 128 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 A Q+ +GI I+ DHH A ++NP D Q +C A V + I + Sbjct: 129 AGQWCKAKGIPFIITDHHTPTDTLPQADVIINPMLQDSTFTQKSICGAVVAWYFCAAIKQ 188 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 L+ + D+ L+ +A+AT+ DV+PL G+NR V KGL R N L E Sbjct: 189 NLKAN------IDMGMFLEYLAIATIADVMPLTGINRILVKKGLESLRTSSNVLATLLRE 242 Query: 285 RV-NISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 PITAENL + P +N GR+ +N LL+S + +L LN R Sbjct: 243 SFARFKKPITAENLAFDFIPLLNCAGRMESANKALELLLSPSLAHATHIYTELQNLNNKR 302 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 + ++ +L++A+ + IQ ++ GD WH G++G++AA+L + + +F +S Sbjct: 303 KEIQQDILQKAQEHI------IQTDDFVLSYGDSWHEGVLGIVAAKLARIYKKSAFVLS- 355 Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 + GSGRS G ++ + S + + GGH+ A GL++E L + Q+ Sbjct: 356 QNADVLKGSGRSYGGANL--IASITPLQQYCLGLGGHSGAVGLSLESCQLWTLIEKLQET 413 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 + F L +V++ L ++LES P+G GNP P F N +Q I+ Sbjct: 414 M--VYEECDENETFFT---LGVKSVDMELFEILESFEPFGEGNPKPTFLLENLTIQEIKP 468 Query: 524 VN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578 + H + T + L G + G+ + + L +Y++ Sbjct: 469 LGREGKHFEYTLADSNGMCL-------AGLEFLAPTRREVGQCVDIHIELMRDYYKN 518 >gi|120536991|ref|YP_957049.1| phosphoesterase domain-containing protein [Marinobacter aquaeolei VT8] gi|120326825|gb|ABM21134.1| phosphoesterase, RecJ domain protein [Marinobacter aquaeolei VT8] Length = 660 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 162/625 (25%), Positives = 252/625 (40%), Gaps = 92/625 (14%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 + NR S + L+ P +LTD KAA R+ A+ + I+ D+D DG Sbjct: 40 IFANRGASYPETYH-----PKHLV-SPTLLTDALKAAVRLSDALLEGQTIICVADFDCDG 93 Query: 106 AASVAL----MMRF------LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLII 154 A A+ M RF + + IPDR GYG P L E I +I+ Sbjct: 94 ATGAAIFNRCMKRFADTLAAFRMPKASLHTVIPDRFRYGYGLKPRLAEDKIKPLYPDVIV 153 Query: 155 TVDCGSTSYDALQYATNQGI----------DVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 T+D G +S+DA+ + DVI+ DHH A+A+VNPNR D Sbjct: 154 TIDNGISSHDAVTRISQWQGVSSANPNGAPDVIITDHHAQGETLPTAFAVVNPNRKDCPF 213 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF----------DLLSLLDLVALATVCDVV 254 L GV F +++L+ + L K + DLVA+ T+ D+V Sbjct: 214 PSKALAGCGVAFYMMLLVRQTLISRLKRNSRTSAAAGGIAAVQINHFADLVAVGTIGDMV 273 Query: 255 PLIGLNRAY-------VVKGLMVARRQGN------PGLKALIERVNISSPITAENLGYMI 301 P+ NR + KGL + R+ + G++AL+E N+S P+TA ++ + + Sbjct: 274 PMDLNNRIMVKVGLDRINKGLQMPARKAHLDGYLSFGVRALLEAANVSYPVTASDIAFQV 333 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQA-EAKVLT 360 P INA GR+ G L+S+ + A + LN+ R+ ++ M ++A EA Sbjct: 334 VPRINAVGRLETPTAGIECLLSETQMMAGIEADRCHKLNEERKSVQRTMQQEADEALASL 393 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE--------------ED 406 + +V+ WHPGIVGL+A+ +KE+ + E + Sbjct: 394 SDTPDTETPCVVLHNPSWHPGIVGLVASGIKERTKGAVICFAPEGDPNAKPGTPEADGDP 453 Query: 407 GKGIGSGRSIEGFDIGK--MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 GSGRS + + A ++++ GGHA AAGL++ + R F K Sbjct: 454 DWLKGSGRS-DNVHLRDTLAFVAAQAPDLMMQFGGHARAAGLSLHKTELNRFKRLFAKAV 512 Query: 465 HNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + + A DG L A + A +E P+G P P F N K+ V Sbjct: 513 EHSLTAAPLVNPVYADGALPAHLRDHAFAAWIER-QPWGNLFPEPTF-TQNFKVIRAAGV 570 Query: 525 NLAHLQMTFE----------SQDSETL-------QAI---AFRVYGTPLGEFLMQSRGKR 564 AH ++ Q+ T+ +AI F + + G Sbjct: 571 GTAHQKLLVMDADEQPLSNTDQNGTTIYPVSHGAKAIPMLWFFSRDEENPD--TVAPGSA 628 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDA 589 + VT L +N +RG Q Sbjct: 629 VRVTYTLTINRFRGQNEIQAIAKSI 653 >gi|303232839|ref|ZP_07319523.1| putative single-stranded-DNA-specific exonuclease RecJ [Atopobium vaginae PB189-T1-4] gi|302481029|gb|EFL44105.1| putative single-stranded-DNA-specific exonuclease RecJ [Atopobium vaginae PB189-T1-4] Length = 435 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 127/435 (29%), Positives = 203/435 (46%), Gaps = 18/435 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 RW L + + +P +VARVLV+R S + +L+ I DP + Sbjct: 10 RWTILPQSSNEE--TTLMRACNLPRLVARVLVSRGKSDPYDVQTYLSADIERDWEDPYCI 67 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 A +RI A+ E+I +FGD+DVDG S L+ + L+ +IP+R +GY Sbjct: 68 PGMHAAVQRIRAALKAHERIAVFGDFDVDGITSTCLLTQALTALGATVTPFIPNRTHEGY 127 Query: 136 GPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G + + + + +NE QLIITVD G ++ +++ ++GIDV+V DHH+ + + Sbjct: 128 GLSVAALTRLLNETPAQLIITVDNGISAASEVEWLRSRGIDVVVTDHHEPDNLVPAIDEV 187 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 NP LD L GV ++ + L+ AL T+ D++ Sbjct: 188 CNPK-LDVTCPSYDLAGVGVALKLVCALGAACG------NPSLWKDYLEFAALGTLADMM 240 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGE 313 L NRA V GL PGL AL I +T+E L + + P +NA GR+ Sbjct: 241 ELTCENRAIVTAGLERLHYTRTPGLLALARVSGIDIHSVTSEELPFSLIPRLNAAGRMDS 300 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + L +L +D + LA +L+ +N R+ E+ + +QA + + V+VV Sbjct: 301 TMLAYHVLCADRLSDAFSLASQLEAVNTLRKEKEAEVTKQALEQAERM---YKNERVLVV 357 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 G W G+ G++AARL+ ++ P S ++ G GSGR+ D+ V + Sbjct: 358 AGVDWAEGVKGIVAARLQRRYHVPCIVCSIQD-GVAKGSGRTAGSIDLFAAVQSC--SDV 414 Query: 434 LVKGGGHAMAAGLTV 448 L + GGH A G+T Sbjct: 415 LERFGGHQGAVGITC 429 >gi|309807701|ref|ZP_07701640.1| putative single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 01V1-a] gi|308169075|gb|EFO71154.1| putative single-stranded-DNA-specific exonuclease RecJ [Lactobacillus iners LactinV 01V1-a] Length = 539 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 228/469 (48%), Gaps = 28/469 (5%) Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 +IP+R DGYGP+ ++ ++ G +LIITVD G T + + YA G+D IV DHH Sbjct: 4 FFIPNRFDDGYGPSLERYQELVSNGTKLIITVDNGVTGIEEVNYAKKCGVDTIVTDHHIF 63 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 + E AYA+V+ N + C AGV + + + + ++ LLDL Sbjct: 64 QDEIPDAYAIVHCNYPNQDYPFDDYCGAGVAYTICRAL-----------MTDNMSELLDL 112 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGP 303 + T+ D+V + G V +GL + PGL+ALI+ + I A ++G+ I P Sbjct: 113 AMIGTIGDMVKVSGEGHIIVKQGLEILNNTQRPGLRALIKNAGLELGSIDASDVGFAICP 172 Query: 304 SINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD 363 INA GR+ ++NL LL+ DD +E E LA ++ LN R+ + + E E ++ Q Sbjct: 173 RINAVGRLADANLAVNLLLCDDEEEAEKLASIVEKLNDKRKQLTQEIFEICEKQI--QQY 230 Query: 364 DIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 Q +V+ +H G++GL+ ++ EK+ +P+ ++ ++G+ GSGRS+ GF++ Sbjct: 231 GWQSKKTLVLYDHNFHEGVLGLVTNKIAEKYHKPTIILTEADNGELKGSGRSVVGFNLFN 290 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 + +L K GGH A GL++++ + +L D F+ + + + D L Sbjct: 291 ALIKLKGT-VLTKFGGHEFACGLSLKKDSLVKLRDCFESSFQPVATSELVK---MYDDEL 346 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETL 541 N + + + + GP+G NP PVF+ N + + + H++M + +E L Sbjct: 347 NLNDLTLDTYRQMVKVGPFGTDNPEPVFSITNPHISKLIKIGQNKNHIKMCVSNFSNE-L 405 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVT-GHLCVNYWRGSKRCQLRVLDA 589 I F +L + +H+ L +N W + Q + D Sbjct: 406 DLIGFDRS------YLDTNILPYVHMIMVTLGINKWNNKAKLQGIISDF 448 >gi|326790449|ref|YP_004308270.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium lentocellum DSM 5427] gi|326541213|gb|ADZ83072.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium lentocellum DSM 5427] Length = 557 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 153/510 (30%), Positives = 232/510 (45%), Gaps = 21/510 (4%) Query: 23 GQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 +E ++ + + D VA ++ RN ++D K+++ + R L D +KA Sbjct: 13 TKEEQCVIDEVSSTYKLYDFVAAIICMRNAFNLDEIKEYILGTTRP--KSYKGLKDIEKA 70 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPS 140 I ++I +EKI I GDYDVDG S +++ + + + Y+P R DGYG NP Sbjct: 71 ISLITESISLNEKIRIVGDYDVDGVTSTYVLLTVFEALNYPHISHYLPVREKDGYGLNPD 130 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRL 200 ++ +G L+ITVD G ++ +A+ A G+ VIV DHH++ +E A A++NP+++ Sbjct: 131 IVANAHADGVSLLITVDNGISAVEAVASAKELGMKVIVTDHHELPNELPIADAIINPHQV 190 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 D L G+ + + + + L + LVAL TVCDV PL+G N Sbjct: 191 DCDYPYKSLAGVGIAYKLGQALISHFKLKPAPALVARIQ---GLVALGTVCDVAPLVGEN 247 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 R V GL + L I+S I+ LG+ IGP +NA GR+ + Sbjct: 248 RHMVKTGLGALNKGA------LPAATMINSRISVGTLGFQIGPRLNACGRLESAETALEY 301 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L + D L +LD LN+ R+ E + + AKV +I+ + H Sbjct: 302 LRTTDPNTLYPFKQRLDSLNKERQDEEMDSIARVNAKVEAMTT---LPDIIIDIDEMAHE 358 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 +VGL+A R+KEK+ RP+ S G GSGRSIE +D+ SF +L GGGH Sbjct: 359 SVVGLVAGRIKEKYYRPTVVFSRTIHGTYKGSGRSIEEYDM--FQSFKPFLHLLDGGGGH 416 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL-NASAVNI-ALIDMLES 498 MA GL V A + + TP +D + NA + L L Sbjct: 417 PMACGLKASTVEQIHAFAKAVNEASS-LTEHDKTPKIYVDKCIYNAYEYDFNELEKQLRL 475 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAH 528 P GAGN P + L+ H Sbjct: 476 FLPTGAGNSAPTLLIKDASLKFNTKYAKNH 505 >gi|310830477|ref|YP_003965578.1| Single-stranded-DNA-specific exonuclease recj [Paenibacillus polymyxa SC2] gi|309249944|gb|ADO59510.1| Single-stranded-DNA-specific exonuclease recj [Paenibacillus polymyxa SC2] Length = 481 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 130/491 (26%), Positives = 215/491 (43%), Gaps = 31/491 (6%) Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA--QLIITVDCGSTSYDALQYA 169 M L + +R + GYG P+ ++ + QLI+TVD G +++ + YA Sbjct: 1 MTELLQKAGAKVAFFTNNRFIHGYGLCPTGVDDMLAMYPETQLIVTVDNGISAFAGIDYA 60 Query: 170 TNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQD 229 + G+ V+V DHH A A+V+P R D LC AGV F +++L+Y + D Sbjct: 61 KSLGLKVVVTDHHDPGESIPNADAVVDPKRHDCEYPFKGLCGAGVAFKLMLLLYWTMDLD 120 Query: 230 NKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS 289 + LD+VAL+TV DVVPLI NR V G+ + + + + Sbjct: 121 -----LSTVYETLDIVALSTVADVVPLIDENRILVSLGISKIQSEDRAVFRVFRSVTGVK 175 Query: 290 SPITAENLGYMIGPSINAGGRI-GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES 348 +G + P INA GR+ G+ + DD +++E + L +N+ R+ M Sbjct: 176 VINAHYTIGMVYAPMINAIGRLDGDPRRAIEMFFEDDEEKIEQTVLYLQQVNELRKKMTV 235 Query: 349 AMLEQAEAKVLTQCDDIQQ---------ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 EQA A V + D+ + VV +H GIVGL+A RLKE + RP F Sbjct: 236 EQTEQAIAMVEGELDEETGLRKSNGKGLRLINVVYHPDFHEGIVGLIAGRLKEHYNRPFF 295 Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 ++ E G GSGR I+GF + + +L+ GGHA A+GLT++ + + Sbjct: 296 VLTK-EHGLIKGSGRGIDGFHLK--EEMDKIKHLLLGYGGHAKASGLTLKEEHLSDFEEA 352 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 K A ++ +++I+ + + +++ L+ P+G P PV A K+ Sbjct: 353 MNKLADGVLTEDHFHKIYRIEHIFEPHELTTDIVEDLKELEPFGEAFPKPVLAVDKFKVD 412 Query: 520 SIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577 + H+++ S L I + + ++ K + G+ +N W Sbjct: 413 KAFYMGTEKQHIKLK-----SGNLDLIMWGMAE----KYREMGEPKIIKAVGYPDLNIWN 463 Query: 578 GSKRCQLRVLD 588 Q V Sbjct: 464 NVTTVQFIVDH 474 >gi|46203165|ref|ZP_00051960.2| COG0608: Single-stranded DNA-specific exonuclease [Magnetospirillum magnetotacticum MS-1] Length = 265 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 117/252 (46%), Positives = 155/252 (61%), Gaps = 3/252 (1%) Query: 3 DQAFLGVECSISGFRWVSLLGQEGIN-RALAITQKHAIPDIVARVLVNRNVSIDYAKDFL 61 + FL V S+ G W G G+ A+ +TQ + +PD+++RVLV R V A+ +L Sbjct: 14 PRPFLDVASSVLGRPWRERCGDPGLQALAVTMTQAYGLPDLLSRVLVGRGVRPAEAEAYL 73 Query: 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV 121 +P +R LMPDP L D + A R+V A+ E++ IFGDYDVDGAAS AL+ +L V Sbjct: 74 SPRLRELMPDPSALVDMEAAVDRLVHAVRRREQVAIFGDYDVDGAASAALLAEYLRALGV 133 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++IPDRI +GYGPN + EGA L++ VDCG+ ++ L A G+DVIV+DH Sbjct: 134 PVRIHIPDRITEGYGPNVGAVTALREEGAGLLVCVDCGTAGHEPLAAAAALGLDVIVLDH 193 Query: 182 HQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP--LNFDLL 239 H P ALV PNRLDDLSG GHLC+AGVVF+ LV + R LR++ P + L Sbjct: 194 HGAPEALPPTRALVYPNRLDDLSGLGHLCSAGVVFMTLVALARRLREEGGFPGSADPRLT 253 Query: 240 SLLDLVALATVC 251 LDLVALATV Sbjct: 254 DFLDLVALATVA 265 >gi|108803730|ref|YP_643667.1| phosphoesterase, RecJ-like protein [Rubrobacter xylanophilus DSM 9941] gi|108764973|gb|ABG03855.1| phosphoesterase, RecJ-like protein [Rubrobacter xylanophilus DSM 9941] Length = 546 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 152/580 (26%), Positives = 236/580 (40%), Gaps = 49/580 (8%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSI---RLLMPDPLILTDCDK 80 + + + + ++ ARVL NR V + A FL+PS+ DP Sbjct: 2 EPDGELVARLARAAGVGELCARVLANRGVLPEEAAGFLSPSLGSVSAPEEDPWR-----V 56 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 AARRI A+ E+I IFGDYD DG S A++ LS + N + +P R GYG Sbjct: 57 AARRIAAAVRRGERIGIFGDYDTDGITSAAVLRLALSRYTDNLCVRLPVR-QVGYGLLEP 115 Query: 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK-SEEIPAYALVNPNR 199 + +G +L++T DCG ++ ++ A + G+DVIV DHH A A+++P Sbjct: 116 YVRDLFADGVRLLVTADCGVSNRGEVELAASLGMDVIVTDHHIPPQELPAAAVAVLDPKV 175 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 D GV + + + R L L LLDLV++ TV D+ PL+G Sbjct: 176 WDPEDPL---AGVGVAWKLAWAVARELEGPG---ARRWLGGLLDLVSVGTVVDIAPLVGD 229 Query: 260 NRAYVVKGLMVARR-----QGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 NR GL R + PGL+AL + + E+LG+ IGP IN+ GR+ + Sbjct: 230 NRVLAFAGLKHLNRALSGGRARPGLEALARVAGLRGAVDEEDLGWRIGPRINSIGRLKDP 289 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++ D +E +A L+ LN R+ + +A +V V Sbjct: 290 GPALDLLLTSDRREALRIASLLNQLNAERQRRTEQAVARALEEV-------DPGQDFKVV 342 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 G+ GL+A R+ GRP+ + DG GS R+ ++ + +L Sbjct: 343 LTEETGGLAGLIAGRVAAATGRPAAVLGRRADGSYGGSARA-GETEVDLYGALLEVGDLL 401 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNASAVNIAL 492 + GGH AAGLTV N + P ++D + V+ L Sbjct: 402 GEWGGHRKAAGLTVAPGNLDAFVRRVNDAVRRQRAADPELFEPAVEVDAEVGLELVDDGL 461 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 + E P+G+GN PVF ++Q R + M+ R Sbjct: 462 LVWHERLAPFGSGNYRPVFVAEGLRIQGARELWEG---MSLLRLGGGL------RAKLAC 512 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKR--CQLRVLDAS 590 E L + + +R ++ +LD Sbjct: 513 APEALPE---GPFDAAFTV----YRSRYTGGAEIEILDWR 545 >gi|260891375|ref|ZP_05902638.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] gi|260858758|gb|EEX73258.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] Length = 475 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 131/426 (30%), Positives = 225/426 (52%), Gaps = 24/426 (5%) Query: 45 RVLVNRNVSID-YAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 ++L +R ++ + ++FLNP + + +P L D +K I +AI + I I+GDYDV Sbjct: 61 KILYSRGITTEKEVREFLNPKLENIQ-NPYGLQDMEKTVLEIEKAIKEQKNIWIYGDYDV 119 Query: 104 DGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 DG S +++ L N N YIP R +GYG N ++K GA L+ITVDCG T+ Sbjct: 120 DGITSTSVLYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKESGADLVITVDCGITA 178 Query: 163 YDALQYATNQGIDVIVIDHHQ-VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 + +++A + + +I+ DHH + A +VNP R ++ L G +F+V++ Sbjct: 179 FPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENEFSFEFLAGVGTIFMVILC 238 Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281 +Y + + LDLVA+ TV D+VPL+ NR GL R N GL+ Sbjct: 239 LYERIGKK------AKAYKYLDLVAIGTVADIVPLVEENRILTKFGLEQLSRSKNKGLRF 292 Query: 282 L--------IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 L N + + ++G++I P NA GR+ ++ + +LLISD+ +E+E++ Sbjct: 293 LLYKLFSTQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAKMVVKLLISDNDREIEIIV 352 Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 +L N R+ +++ ++E+ E + + D+++ VIV +H G++G+ A+++ +K Sbjct: 353 KELINKNFERKELQNQIVEKVEKHI--EESDLKEDYVIVDYSPEYHHGVIGIAASKIVDK 410 Query: 394 FGRPSFAISFEED-GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452 + +P+ I +ED G +GS RSI F+I + + + VK GGH+ AAG T+ N Sbjct: 411 YYKPAIIIEVKEDEGIAVGSCRSIGNFNI--LEALQSMPELFVKFGGHSGAAGFTIGIKN 468 Query: 453 FGRLCD 458 Sbjct: 469 LELFRK 474 >gi|196019095|ref|XP_002118923.1| hypothetical protein TRIADDRAFT_62906 [Trichoplax adhaerens] gi|190577694|gb|EDV18591.1| hypothetical protein TRIADDRAFT_62906 [Trichoplax adhaerens] Length = 260 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 117/255 (45%), Positives = 158/255 (61%), Gaps = 7/255 (2%) Query: 7 LGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSI 65 L V+ S F+W E TQK I DI+A+VL+NR + + ++FL P I Sbjct: 8 LNVKNSYKKFQWTLQEQNE--KDISFFTQKFNISDILAKVLINRGINDAESMQNFLYPKI 65 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 + LMPDP + D DKAA+RI ++I N EKI+I+ DYDVDGA S AL+ +FL V A++ Sbjct: 66 KNLMPDPFLFKDMDKAAKRIAKSIINKEKIVIYADYDVDGATSSALLKKFLKDLGVEASV 125 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 YIP R +GYGPN S +K I +G LIIT DCG+ +++ ++YA + G+DVIVIDHH Sbjct: 126 YIPCRFNEGYGPNISAFQKLIEQGNDLIITTDCGTVAFEPIKYAQDMGVDVIVIDHHLAL 185 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSL 241 YA++NPNRLDD ++ A GVVF V+ + ILR+ N +L+ Sbjct: 186 ERLPECYAVINPNRLDDEFKFKNIAAVGVVFFVITAVRSILREQNFFNQLKNTEPNLIEY 245 Query: 242 LDLVALATVCDVVPL 256 LDLVAL TVCDV+PL Sbjct: 246 LDLVALGTVCDVMPL 260 >gi|312864661|ref|ZP_07724892.1| putative single-stranded-DNA-specific exonuclease RecJ [Streptococcus downei F0415] gi|311099788|gb|EFQ58001.1| putative single-stranded-DNA-specific exonuclease RecJ [Streptococcus downei F0415] Length = 325 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 114/330 (34%), Positives = 165/330 (50%), Gaps = 16/330 (4%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S F W + Q L + + + D+ A++L R + +DFL+ + L DP Sbjct: 4 SKFDWKQ-VDQAPSEPFLELAKTEELDDLAAKILYQRGIDDQPKLEDFLSADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D DKA RI QAI EKI+I+GDYD DG S ++M L +Y+P+R Sbjct: 62 YLLHDMDKAVERIRQAIEAGEKILIYGDYDADGMTSSSIMREALEMLGAENQVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LI+TVD G ++A+ YA QGIDV+V DHH + A Sbjct: 122 DGYGPNLSVYKYFIEQEGISLIVTVDNGVAGHEAIAYAQEQGIDVVVTDHHSLPDSLPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 YA+V+P D +L GV F + + + LLDLVA+ T+ Sbjct: 182 YAIVHPEHPDGDYPFKYLAGCGVAFKLASALLEGIPN-----------ELLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGR 310 D+V L G NR V GL + GL+ L++ I S + E +G+ I P +NA GR Sbjct: 231 DMVSLTGENRILVKYGLQMLAHTERIGLQELMQVAAIESSDLNEETVGFKIAPMLNALGR 290 Query: 311 IGESNLGSRLLISDDSQELEMLAMKLDVLN 340 + + N LL D QE +A+ ++ Sbjct: 291 LDDPNPAVELLTGFDDQEAHEIALMIEEKM 320 >gi|300813961|ref|ZP_07094259.1| putative single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511924|gb|EFK39126.1| putative single-stranded-DNA-specific exonuclease RecJ [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 406 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 121/415 (29%), Positives = 206/415 (49%), Gaps = 22/415 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W ++ +K+ + I+ R+L+NR + S + + FL P + + P+ L Sbjct: 3 KWFIKNSKDYELSY----EKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIH-SPIFL 57 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D K+A + I I I GDYDVDG S ++ L + IP+R++DGY Sbjct: 58 KDMVKSANITISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIGAKVSYDIPNRVLDGY 117 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV---------KS 186 G N ++++ + LIIT D G +++ ++YA N GIDVIV DHH+ + Sbjct: 118 GINNKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQE 177 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A AL++P D +C A V F ++ +Y I ++ L VA Sbjct: 178 KLPDANALIDPKVSDSKYPFKDICGACVAFKLISYLYLIKGKEE----QEVYDDFLAYVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSI 305 LATVCDV+PL NR + GL + + GL ALI +I I ++G++IGP++ Sbjct: 234 LATVCDVMPLKDENRILIHYGLEALKNVQDVGLNALISACDIKKEDIDVYHIGFIIGPTL 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL+ D A ++ +N R+ + +A + Q + Sbjct: 294 NACGRLKTAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQEL-L 352 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 ++ ++++ + +VG++A R+KEKF RP+ ++ + +G GSGRSI+ ++ Sbjct: 353 KKYPILLIYVPNINESVVGIIAGRIKEKFYRPTIVLT-DSNGIIKGSGRSIDEYN 406 >gi|294101597|ref|YP_003553455.1| phosphoesterase RecJ domain protein [Aminobacterium colombiense DSM 12261] gi|293616577|gb|ADE56731.1| phosphoesterase RecJ domain protein [Aminobacterium colombiense DSM 12261] Length = 554 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 142/563 (25%), Positives = 241/563 (42%), Gaps = 40/563 (7%) Query: 33 ITQKHAIPDIVARVLVNRNV----SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 I ++ + P VA +L + ID A+ +L+PS+ + A R + Sbjct: 22 IARELSCPPFVAAILEMQGRVSLHDIDKARAWLSPSLDFFAASCFLGEGARAVAERWQR- 80 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + + ++++GDYDVDG +S L M + YIP R ++GYG + ++++ + Sbjct: 81 LSSLGNVVVYGDYDVDGVSSTTLAMELCKERAAGVRYYIPHRHMEGYGLHRQVVQQLLVA 140 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 G +I VDCG+ D L+ A G++V V DHH + E+PA +VNP D Sbjct: 141 GCDTLIIVDCGTKDGDILKEAQQTGMNVFVFDHHLPEKGELPASFIVNPQIDGDK-EGKL 199 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 LCA V++L K+ L LDLVALAT+ D + L LNRA V +GL Sbjct: 200 LCATAVLWLWAYQF--------KIMPMEWLAEHLDLVALATIADCMTLGSLNRALVKEGL 251 Query: 269 MVARRQGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327 R PGL+ LI+R+ + E L + P +NA GR+ ++L ++L ++ Sbjct: 252 ERIRYTARPGLELLIKRLGLFHRFVNEEQLAMKVIPCLNAAGRLAFADLAVKVLTGEEPV 311 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 E +L LN+ R+ + + + ++A V ++ S V+ + W G++ +A Sbjct: 312 E--NHVEELISLNRKRQNLSTRITKEAVKVV-------EERSKHVLFEESWPVGVLSGVA 362 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447 +RL + P ++ G+ R EG + + L GGH AAG + Sbjct: 363 SRLCSEKNAPV-VLAAPVQDWIRGTLRMPEGGN--AVQVLDHLSDQLEAWGGHKQAAGFS 419 Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 V + N+ +L + ++ L+ S + + GP+G GNP Sbjct: 420 VSKDNWEKLRGDLEHILASVEYEDPEISAL----ALHPSQITLQDWKSALDLGPFGMGNP 475 Query: 508 NPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH- 566 P+ ++ + + L + + +AF E L + Sbjct: 476 CPLLYCESYGNEQFLPLGKTGLHLKIQLGSEYL---VAFNSV-----EILKTLSSSHITG 527 Query: 567 VTGHLCVNYWRGSKRCQLRVLDA 589 H V++WRG R Q + Sbjct: 528 WVYHPRVDFWRGQPRLQFMLDYI 550 >gi|297538991|ref|YP_003674760.1| phosphoesterase DHHA1 [Methylotenera sp. 301] gi|297258338|gb|ADI30183.1| phosphoesterase DHHA1 [Methylotenera sp. 301] Length = 403 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 111/413 (26%), Positives = 192/413 (46%), Gaps = 20/413 (4%) Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV--PLNFDLLS 240 A ++NPN+ +L GV+F L+ + +R+ +L Sbjct: 1 MPGQVTPKAACIINPNQHGCSFPSKNLAGVGVMFYCLLGLRAEMRERGLFAEKPEPNLTE 60 Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLG 298 LLDLVAL TV D+V L NR V +GL R L A++LG Sbjct: 61 LLDLVALGTVADLVKLDDNNRILVEQGLRRIRAGACSQGILALLRVAGRQPQSTNAQDLG 120 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + +GP +NA GR+ + LG + L+++ E +A +L LN +RR +E+ M + A + Sbjct: 121 FYVGPRLNAAGRLDDMTLGIQCLLAESELEATTIAQRLQDLNVHRRSIEADMQDGAS--L 178 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 + +I I + + WH G++G+LA+R+KE++ RP A + DG GSGRSI Sbjct: 179 SLEEINIDNQFAISIYQEDWHQGVIGILASRIKERYHRPVIAFANAGDGLLKGSGRSIAS 238 Query: 419 FDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV 476 + + + +++K GGHAMAAGLT+++ +F F+ +++ V Sbjct: 239 LHLRDALDLLSKHQPDLILKFGGHAMAAGLTIKQADFELFNQSFEAVVKSLITEADLESV 298 Query: 477 FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ 536 ++DG L+ S + A LE+ +G G P+F ++ + R++ HL+++ + + Sbjct: 299 LEVDGNLSKSEMTFATAQALEN-QVWGQGFAPPLFYDE-FEVLNQRLLGEKHLKLSLK-K 355 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 D+ + AI F + L N + G+++ QL + Sbjct: 356 DASVIDAIYFNHAEF---------LPDEIQAAYQLQTNSYNGTQKVQLNLRYV 399 >gi|332686623|ref|YP_004456397.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus plutonius ATCC 35311] gi|332370632|dbj|BAK21588.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus plutonius ATCC 35311] Length = 325 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 110/325 (33%), Positives = 174/325 (53%), Gaps = 14/325 (4%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLI 74 ++W + + + + I + ++L RN+ + A K FL+P++ + DPL+ Sbjct: 6 YKWKLKEQEVLPQSFIQLLNQQKIDPFIGQLLWQRNLRNETALKKFLSPTLEDIY-DPLL 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D KA +RI A N E+I+I+GDYD DG S LM + + + ++P+R + G Sbjct: 65 MNDMKKAIQRIQTAAENGERILIYGDYDTDGITSTVLMKETIESIGGDVDFFLPNRFIHG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YGPN + ++ I +G QLIIT+D G ++A+Q A +G+DVI+ DHH++ AYA+ Sbjct: 125 YGPNKEIFKEKIEQGIQLIITIDNGVAGHEAIQLAQEKGVDVIITDHHELPVSLPQAYAI 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P D L GV F V + + LDLVAL T+ D+V Sbjct: 185 VHPRHPDGKYPFDDLAGVGVAFKVASALLEE-----------PPVEFLDLVALGTIADLV 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGE 313 L NR V GL++ ++ GLK LIE+ + I+ E++G+ + P +NA GR+GE Sbjct: 234 SLTDENRVLVKIGLVILQKSERIGLKCLIEKSGLKQETISEEDIGFSLAPRLNAIGRLGE 293 Query: 314 SNLGSRLLISDDSQELEMLAMKLDV 338 + G +LL + D QE E LA +D Sbjct: 294 AGPGVQLLATFDDQEAEQLATMIDE 318 >gi|226323923|ref|ZP_03799441.1| hypothetical protein COPCOM_01700 [Coprococcus comes ATCC 27758] gi|225207472|gb|EEG89826.1| hypothetical protein COPCOM_01700 [Coprococcus comes ATCC 27758] Length = 407 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 121/406 (29%), Positives = 209/406 (51%), Gaps = 23/406 (5%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLIL 75 WV L I++K I VA ++ NR+ + D + +LN +I L D +++ Sbjct: 3 NWVLLRKGADFQ---HISEKFHISPRVASLIRNRDVIGDDAIEKYLNGTIADLY-DGMLM 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DKA + + I + KI I GDYD+DG S +++ + + IPDR+ DGY Sbjct: 59 KDMDKAVAVLGEKIKENAKIRIIGDYDIDGIQSTYILLEGFRMLGADVDSDIPDRMKDGY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE------- 188 G N +L+++ + I+T D G + + + YA + G+ ++V DHH+V E Sbjct: 119 GLNRNLIDRALEADVDTIVTCDNGIAAAEEIAYAKSMGMTIVVTDHHEVPYTEIGAGRRY 178 Query: 189 --IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+V+P + D LC A V + ++ + + +D D L++ VA Sbjct: 179 ILPEADAVVDPKQEDCTYPFKGLCGAAVAYKLVEALMEAMGKD-----AEDADYLMENVA 233 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSI 305 +AT+ DV+ L+ NR +V +GL + +R N GLKAL+ ++ ++ ++G++IGP + Sbjct: 234 IATIGDVMDLVDENRIFVKQGLDMLKRTENLGLKALMGCTGVNVDKLSPYHIGFVIGPCM 293 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 NA GR+ + LL + E ++LA L LN +R+ M + +E+A +V + ++ Sbjct: 294 NASGRLDTAKRALELLEAKKVAEADLLAGDLKALNDSRKDMTAQAVEEAFIQV--ENSEL 351 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIG 411 + A V+VV H + G++A R++EK PS + E G+ G Sbjct: 352 KDADVLVVYLPECHESLAGIVAGRIREK-ILPSGLCADEGRGRFKG 396 >gi|154499123|ref|ZP_02037501.1| hypothetical protein BACCAP_03117 [Bacteroides capillosus ATCC 29799] gi|150271963|gb|EDM99189.1| hypothetical protein BACCAP_03117 [Bacteroides capillosus ATCC 29799] Length = 537 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 141/562 (25%), Positives = 223/562 (39%), Gaps = 49/562 (8%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPL---ILTDCDKAARRIVQAIYNSEKIM 96 + +L +S + L P P L +AA I++A + Sbjct: 12 STVTEAILTASGLSEEEL----------LHPAPNSHVTLDGLQQAAEVILRARNEGRSAV 61 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I GDYDVDG S A++ S + IP R +GYG + + +E LI+TV Sbjct: 62 IIGDYDVDGITSTAILSMLFSFLRIRHTTIIPKRFTEGYGVSTAHIEDV---SDALIVTV 118 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G ++ L A + + +V+ H + +P + + G H C AG+ + Sbjct: 119 DNGISAGSILTDARKERGNYVVVVDHHLPDASVPEVDAIIDPHYYNSGGFMHYCGAGLAY 178 Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + + + V LL L A+ TV D +PLIG NR V K L VA + Sbjct: 179 QLAMYMISE-----DVAPETLCNDLLILAAVGTVADSMPLIGDNRLIVSKALAVANNRFA 233 Query: 277 PG---LKALIERVNISSPITAENLGYMIGPSINAGGRIGES--NLGSRLLISDDSQELEM 331 P L+ L++ + A L Y + P +NA GR+ +S + + L+ D + Sbjct: 234 PMSAGLRCLLDACGDPGTLRANTLSYKLSPMLNAPGRLYDSGGSSVLKALLCKDQELGNS 293 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 K+ +NQ+R+ M A L A Q +S IVV G++G++A RL Sbjct: 294 YVTKMVAINQDRKRMVEAYLSLACDSAQGQ------SSPIVVYLPGLLEGLLGVVAGRLI 347 Query: 392 EKFGRPSFAISFEEDGK-GIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 F +S DGK GS R++ G + +++ +L GGH+ AAG+T+ER Sbjct: 348 GTFNSTVVVLSDSRDGKAIKGSVRAVPGDNAKELLDSV--RNLLTVYGGHSGAAGMTLER 405 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 N D + + D L+ V + L P G G PNPV Sbjct: 406 ANLDAFTD----ALKEMRSSHSVCSNLLYDVELSQETV-FRSMRALNRFEPLGHGVPNPV 460 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSR-GKRMHVTG 569 N ++Q + + + F + G E + + + V G Sbjct: 461 CVIRNVEVQDVAYMGQDKNTVKLVCDG--------FSILGFGKAELYRKHNEPRTLDVIG 512 Query: 570 HLCVNYWRGSKRCQLRVLDASP 591 L N++RG Q+ D P Sbjct: 513 TLSENHFRGRTTIQVVAEDFHP 534 >gi|325273842|ref|ZP_08140025.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp. TJI-51] gi|324101027|gb|EGB98690.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp. TJI-51] Length = 352 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 172/332 (51%), Gaps = 9/332 (2%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V + L+ S+ L+P L + +V AI ++I+I Sbjct: 17 NLPPLLTRLYAARGVQSE---AELDKSLARLLPY-QQLKGIEAGVDLLVAAIDQRQRILI 72 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 73 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITV 132 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S D + A G+ V+V DHH + A A++NPN+ L GV+F Sbjct: 133 DNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKALAGVGVIF 192 Query: 217 LVLVLIYRILRQDNKV--PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR- 273 VL+ + LR + ++ LLDLVAL +V DVVPL NR V +GL R Sbjct: 193 YVLMALRARLRSLGRYATQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252 Query: 274 QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + PGLKA++E IT+ +LG+++GP +NA GR+ + +LG L+ +D + + Sbjct: 253 RARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDPALAQDM 312 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 A +LD LNQ+R+ +E M +A A++ + Sbjct: 313 AQQLDDLNQDRKSIEQGMQREALAQLKDLPVE 344 >gi|288574631|ref|ZP_06392988.1| phosphoesterase RecJ domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570372|gb|EFC91929.1| phosphoesterase RecJ domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 550 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 148/564 (26%), Positives = 248/564 (43%), Gaps = 38/564 (6%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 + L I +K D+VA VL +R + ++F I + + +A Sbjct: 16 DDEILKIAEKMNCSDVVAAVLSSREKDGLINIENFRVGGIDESLSSLELGPGVSEAVDTW 75 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEK 144 +++ + ++++GDYDVDG AS AL + + + Y+P R +GYG + L+ + Sbjct: 76 KRSV-SGSSVLVYGDYDVDGIASTALAVELAGVSGASSVHYYLPHRQKEGYGVHLPLIRR 134 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 + +G Q +I DCGS + L+ A + G+ VIV DHH V + I ALVNP R Sbjct: 135 ALAQGVQTLIITDCGSKDVEPLREAVDGGMAVIVFDHHSVDGDTIDLPALVNPQRGGSQE 194 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 +LCA V++ + + R+ L LDLVALATV D VP+ LNR V Sbjct: 195 A-RNLCATSVLWCWAAVSSIVSRR--------WLEERLDLVALATVADCVPMGKLNRVLV 245 Query: 265 VKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 +GL + R G+K L R+ +S+ + E L + P +NA GR+ ++L +++ Sbjct: 246 DRGLEMLRNTRRSGIKELYARLGVSTAVLDEETLAMKVIPCLNAAGRMDVADLALSIVLG 305 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 + +LD LN+ R+ + + + K+ ++ V+ DRW G++ Sbjct: 306 TGNV--AGDVDRLDALNRRRKDLSADISSAIAEKI-------KRDMEHVLYDDRWPVGVL 356 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 +A+RL + + FA++ G+ R EG + ++S + +L GGH A Sbjct: 357 SAIASRLCHSYDK-GFALAAPSGSGIKGTLRVPEGANAVGILSEL--DDMLTAWGGHPYA 413 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 AG +V+ +G+L + +IVP V + D S ++AL L + GP+G Sbjct: 414 AGFSVDPSRWGKLSSRLSEKLRSIVPERTVETVIEYD----LSRFDMALWRDLRTIGPFG 469 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 NP P F P + + + + + IAF + Sbjct: 470 QLNPFPCFFIPRRGGERLLPLGKGEIHCKIDVGSGFL---IAFNGAEQHREMDNIAGW-- 524 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVL 587 +N W+G Q V Sbjct: 525 ----LYRPRLNQWKGRINLQFLVE 544 >gi|291280765|ref|YP_003497599.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans SSM1] gi|290755467|dbj|BAI81843.1| single-strand DNA-specific exonuclease [Deferribacter desulfuricans SSM1] Length = 632 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 136/544 (25%), Positives = 258/544 (47%), Gaps = 35/544 (6%) Query: 53 SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM 112 ++D ++ N + ++ D ++D +A I+QAI ++ I+++GDYDVDG ++ Sbjct: 49 TVDTIQNSFNDNFYKIIQDLNQISDIQDSANIIIQAIKQNKTILLWGDYDVDGTMGTTIL 108 Query: 113 MRFL---SHCSVN----ANMYIPDRIVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYD 164 ++L ++N +IPDR +GYG N ++++K N +++T+D G T+ + Sbjct: 109 YKYLQAVKRLNLNSKFKVFYHIPDRFAEGYGLNQNMLDKLYNIYKYDVLVTIDSGITNLN 168 Query: 165 ALQYATNQ-GIDVIVIDHHQVKSEEIPAYA-LVNPNRLDDLSGQGH---LCAAGVVFLVL 219 +++ +D IVIDHH + EI YA ++N R DD+ + C AG+ +L Sbjct: 169 EIKHIKQNYNVDTIVIDHHTISDSEIFKYAKVINHRREDDIFFNRYQTPFCGAGLAYLFS 228 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR-----RQ 274 + + L+ + + A+AT+ DVVPL+ NR V +G + ++ Sbjct: 229 LYLNEQLKLLSLNE----MDKYSVYAAIATIADVVPLVNYNRVLVRQGFKLLNDNTFLQK 284 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 P L + + +NI I ++ + + I P +NA GR+ ++N L ++++ +++ Sbjct: 285 EIPQLYYMKDILNIKQ-INSDEIAFKIAPVLNAVGRLSKANQIVDLFVTNNQRDINSKIN 343 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 LN R+ E +LE + + ++ + V G+ WH G++G++A +L F Sbjct: 344 YFVTLNNERKSKEKEILELIYGVIDLEKIAKEKRIIAV--GNNWHKGVIGIVAGKLANNF 401 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 P+ +S + DG S RSIEGFD+ + + L K GGH AAGLT++ N Sbjct: 402 NVPTIILSKDNDGTCTASCRSIEGFDLYEAIKRCSFH--LEKFGGHEQAAGLTIKYENLK 459 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASA-VNIALIDMLESAGPYGAGNPNPVFAF 513 F I + T ++ D +L+ +++ I L P+G G P F Sbjct: 460 EFVADFTNITSKIPVEISTKKTYETDVLLSPDYFLDVKNILSLHEIEPFGNGFTKPSFGA 519 Query: 514 PNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV 573 K+ I+ + ++ T ++ ++A F Y + + K + T + + Sbjct: 520 KG-KVVDIQSIGKSNNHYTVRFEN-FKIKANLFNYYDD-----INKILNKEIAFTYYPQL 572 Query: 574 NYWR 577 + ++ Sbjct: 573 DTFK 576 >gi|258616311|ref|ZP_05714081.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium DO] Length = 600 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 120/418 (28%), Positives = 192/418 (45%), Gaps = 28/418 (6%) Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 I+ DHH++ AYA+V+P L GV F V + Sbjct: 1 IITDHHELPENLPDAYAIVHPRHPAGHYPFPDLAGVGVAFKVASALLEE----------- 49 Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAEN 296 + LDLVA+ T+ D+V L NR V G+ GL+AL E + E Sbjct: 50 PPVEFLDLVAIGTIADLVSLTDENRILVSLGIDAIHHSERIGLQALFEESGVKMRDADET 109 Query: 297 -LGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAE 355 +G+ I P +NA GR+G+ LL + D +E + A KL+ +N+ R+ + + ++A Sbjct: 110 TIGFSIAPRLNAIGRMGDPRPAVSLLATFDEEEASVQAKKLNEINEERKAIVEQITQEAL 169 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 A V + + ++ WH G++G++A ++ + G+P+ ++ +EDG GSGRS Sbjct: 170 AMVNKEN------HIHLLVNRGWHEGVLGIVAGKIMNETGKPTLVLTLKEDGSAKGSGRS 223 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 IE ++ + GGH A GLT+ N L + ++ + L+ P Sbjct: 224 IEALNL--FEMLDQMRDLFTYFGGHHAAVGLTMPSENVTILQEKMNQYIVDHQIDLMRGP 281 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTF 533 +ID VL + V + ID L+ P+G NP P F F + ++I+ + HL+ Sbjct: 282 ELRIDEVLLPNEVTVERIDELKLLAPFGTDNPLPQFLFRQVQAENIKRIGANQQHLKFVL 341 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 S+ L A+AF +GT E L ++ V G L +N W G K+ QL V D S Sbjct: 342 SDASSQ-LDAVAFG-FGTQEEELLNN----QVDVVGKLSINEWNGRKKPQLMVSDFSV 393 >gi|294671183|ref|ZP_06736037.1| hypothetical protein NEIELOOT_02891 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307121|gb|EFE48364.1| hypothetical protein NEIELOOT_02891 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 461 Score = 233 bits (594), Expect = 6e-59, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 221/475 (46%), Gaps = 24/475 (5%) Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 +P+R +GYG P + E GA L++TVD G S + A G+DVIV DHH + + Sbjct: 2 VPNRFENGYGLTPEIAEAAAAAGAHLLLTVDNGIASMAGVARAAALGLDVIVTDHH-LPA 60 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP---LNFDLLSLLD 243 EE P +VNPN+ +L GV+F VL + +R+ + +L LLD Sbjct: 61 EETPDCIIVNPNQQGCGFPSKNLAGVGVIFYVLTALRAEMRRRGRFSDGLTEPNLADLLD 120 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISSPI-TAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG++AL + ++G+ + Sbjct: 121 LVALGTVADVVPLDHNNRILVSQGLKRMRAGKMRPGIRALFDAARRDWRKAQPFDMGFAL 180 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 GP INA GR+ + ++G L++D+ + LA +L+ LN RR +E +ML A Sbjct: 181 GPRINAAGRLDDMSVGIACLLADNDAAAQTLAAQLNDLNIERREIEQSMLNDALTGFPET 240 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 Q + + D +H G+VG++A RLK++F RP+ + ++G+ GSGRSI + Sbjct: 241 LPFGQT--TLTIYRDDFHQGVVGIVAGRLKDRFHRPTIVFAPADNGEVRGSGRSIPKLHL 298 Query: 422 GKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 + +++K GGHAMAAGLT+ + R F++ ++ T + Sbjct: 299 RDALDLVAKRHPDLILKFGGHAMAAGLTIHGNDVARFQTAFEETVRGLLDEDDLTQTYLT 358 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQD 537 DG L A + + L SA +G G P F + + + H + + +D Sbjct: 359 DGSLPAGDITLERAQHL-SAHVWGQGFAPPSF-TDEFSVVRQQSMGAEGKHKKALLK-KD 415 Query: 538 SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ +R + +R+ N WR + QL + Sbjct: 416 GYEFEAMFWRCGE---------NIPERIRTVYRPVANEWRDNIELQLYIDYWEAA 461 >gi|218281323|ref|ZP_03487811.1| hypothetical protein EUBIFOR_00376 [Eubacterium biforme DSM 3989] gi|218217508|gb|EEC91046.1| hypothetical protein EUBIFOR_00376 [Eubacterium biforme DSM 3989] Length = 517 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 127/548 (23%), Positives = 221/548 (40%), Gaps = 53/548 (9%) Query: 54 IDYAKDFLNPSI--------RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 +FL P + L+ + RI++A+ N EK+++ GDYD DG Sbjct: 8 TKKVLEFLEPDSSKWAYWTSKQLLNPVSESKCMESFKERILKAVSNREKVIVAGDYDCDG 67 Query: 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 ++ +M+ L + YIPDRI +GYG + + + +G LI+TVD G S A Sbjct: 68 ISATTIMVSGLRKLGLECGFYIPDRIKEGYGLSEATVMLAHKKGYSLILTVDNGIKSKPA 127 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 L + G+DVIV DHH + E + LC AG+ + + R Sbjct: 128 LALSKELGMDVIVTDHHTMDEEVNCDIVVHPDLMEPC---FETLCGAGIAYECM----RK 180 Query: 226 LRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIER 285 L ++ LL L LA++ D++ + G RA + L + +L Sbjct: 181 LGVEDDY--------LLQLAGLASISDMMVVKGQTRALIQNALRSINETHEKHIFSLA-- 230 Query: 286 VNISSPITAENLGYMIGPSINAGGRIG---ESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 + ++G+ + P +NA GR+ N R ++ D + + L ++ +N Sbjct: 231 --TDRDLNETSIGFQVVPKLNAIGRLSNLANVNNVVRYFLAHDDETIYTLGSQITQMNTI 288 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ M M + A K + + ++E +H GI+GL+A L +F +P ++ Sbjct: 289 RKQMSDQMQKTALLKCKS------NEDIYIIEDTSFHEGIIGLVAGALCSRFNKPCIVLA 342 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 E G S RS EGF+ + + V GGH AAG ++ F DF Sbjct: 343 KNEQG-YKASMRSPEGFNCMEFLG---PYKHFVVFGGHENAAGFSLNLNEFDLFEDFVHA 398 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 ++ ++ +++ I L+ P+G G P F + +++S+ Sbjct: 399 RIKEYTYSVKKKETL----IITDDELSLETIQSLDVLRPFGPGFVFPSFEIIHPQIKSLY 454 Query: 523 VV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 N H + T ES LQ + F + + G +N ++G K+ Sbjct: 455 DFQNHKHRKYTLESG----LQCMRFNQSEVEYKKSVNAIH----SFIGTAQINQYQGRKQ 506 Query: 582 CQLRVLDA 589 + + Sbjct: 507 VNFVIDEI 514 >gi|256752577|ref|ZP_05493431.1| phosphoesterase RecJ domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748515|gb|EEU61565.1| phosphoesterase RecJ domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 407 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 141/420 (33%), Positives = 228/420 (54%), Gaps = 16/420 (3%) Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 + YIP+R+V+GYG N ++K G +LII+VDCG TS ++ A GIDVI+ DHH Sbjct: 2 DYYIPERLVEGYGINEEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHS 61 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 + E A ++NP+ D L GV F + + + LLD Sbjct: 62 IPKEIPQADVVINPHLPDSEYPFCDLAGVGVAFKLSQALI-----------GEEAYELLD 110 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYMIG 302 +V++ T+ D+VPL+G NR V +GL N GLKALI+ +S I ++G+++ Sbjct: 111 IVSIGTIADIVPLLGENRIIVKEGLKRLNETQNIGLKALIKASGLQNSEIDEYHVGFILA 170 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +NA GR+ + RLLIS D +E+E +A L+ N NR+ +E+ +L++A K+ + Sbjct: 171 PRLNAAGRLRSAEAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKI-KET 229 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 D+ + VIV+ WHPG++G++A+R+ E+F RPS IS +G+G GSGRSIEGF++ Sbjct: 230 VDLNKEKVIVLWDKNWHPGVIGIVASRITERFHRPSILISL-GEGEGKGSGRSIEGFNLY 288 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 K + + + L+K GGH MAAG+ +E+ N ++A ++ L P +ID Sbjct: 289 KALEYC--KDYLIKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAK 346 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 + ++I + ++ P+G+ NP P F F + + +N + +D + Sbjct: 347 VKNEKIDIEIAKQVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDKFVYE 406 >gi|237750206|ref|ZP_04580686.1| single-stranded DNA-specific exonuclease [Helicobacter bilis ATCC 43879] gi|229374100|gb|EEO24491.1| single-stranded DNA-specific exonuclease [Helicobacter bilis ATCC 43879] Length = 583 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 135/554 (24%), Positives = 239/554 (43%), Gaps = 51/554 (9%) Query: 22 LGQEGINRALAITQKH-AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDK 80 Q N Q I +I + +L R KDF +++ +P P L + + Sbjct: 8 NTQHDFNAIKKGLQTFSHINEIES-ILKQR------FKDFCFHTLKD-IPHPKELHNNME 59 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNP 139 A+ + Q+I +EKI+I GDYD DG + ++M+ F N +P+R + GYG + Sbjct: 60 ASLFVCQSILRNEKIVIVGDYDTDGICATSIMLDFFDQLSYNNVAFAMPNRFIHGYGFSV 119 Query: 140 SLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK------SEEIPA 191 L + + E + +IITVD G +S+ A + I +I+ DHH ++ + Sbjct: 120 KLFHEILKEHSDVKVIITVDNGVSSFQAAELCREHNIGLIITDHHTLEVDSNRDQKIPCC 179 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLI------------------YRILRQDNKVP 233 ++NP + +C + V + I ++L K Sbjct: 180 NFMINPQQAICNFPYSEICGSLVAWYFCCAIKISMLNLCSDSNTKNNQTKKLLNCYEKNL 239 Query: 234 LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT 293 + S L LV +AT+ DV+PL +N L +AL+E N+ S I Sbjct: 240 KIIRMESFLLLVGIATIADVMPLNAINHTICKYALKHIPNSKRYAFQALME--NLKSSID 297 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 ++ LG+ I P +NA GRI + + L S +L LN R+L++ + + Sbjct: 298 SQVLGFRIIPLLNAAGRISDGKIALSFLRSTSLSNARFYLKQLKDLNTQRKLLQDEVTNK 357 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 A + Q +++ G+ WH G++G++A ++ ++F +P F ++ G GSG Sbjct: 358 AFQSISQIP---QNENMLCAVGEDWHEGVLGIVAGKMADEFQKPCFVLTNTN-GVCKGSG 413 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 RS D+ + S ++ + GGH A GL ++ N F+ +HNI Sbjct: 414 RSAGDVDL--ISSMQKIGHLMQRYGGHVGAVGLELKDYNLESFIKSFKPISHNIEKKE-- 469 Query: 474 TPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 + G+LN+ +N L + S P+G GNP P F ++ + + F Sbjct: 470 ----NVLGILNSHLINYELFSCITSFEPFGNGNPLPKFLCE-MEILECKKTGQGFREFHF 524 Query: 534 ESQDSETLQAIAFR 547 + ++ +++ + F Sbjct: 525 KRTENSSIKGMFFN 538 >gi|329733187|gb|EGG69524.1| putative single-stranded-DNA-specific exonuclease RecJ [Staphylococcus aureus subsp. aureus 21193] Length = 346 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 108/351 (30%), Positives = 180/351 (51%), Gaps = 14/351 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 ++W E I+ +T K + IV ++L ++++ + A + + + D L L Sbjct: 6 YKWKLTKPAEYISD--ELTSKLKLTPIVKKILESKSIIDEQAIESIISD-TDVNHDALQL 62 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +D KA RI +AI N EKI+++GDYD DG S +++ L +IP+R +GY Sbjct: 63 SDMTKAIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGY 122 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 GPN +EG LIITVD G ++ ++ + G+DVIV DHH++ S AYA+V Sbjct: 123 GPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIV 182 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P LC AGV + + ++ + LVA+ T+ D+V Sbjct: 183 HPMHPSFNYPFQQLCGAGVAYKLAQVLIENVPD-----------YFKALVAIGTIADLVS 231 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 L NR+ V +GL V Q +KAL++ + I E +G++IGP +NA GR+ +++ Sbjct: 232 LTDENRSLVKQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDAS 291 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 L LL++DD +E LA +++ N+ R+ + + + E+A A T+ Sbjct: 292 LACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGD 342 >gi|94988415|ref|YP_596516.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes MGAS9429] gi|94541923|gb|ABF31972.1| single-stranded-DNA-specific exonuclease [Streptococcus pyogenes MGAS9429] Length = 309 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 99/315 (31%), Positives = 151/315 (47%), Gaps = 21/315 (6%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDP 72 S + W + + + + A+++ +R + + A +FL + L DP Sbjct: 4 SKYSWKIKDKKPDDG-FFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLH-DP 61 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D KA RI QAI E+I+I+GDYD DG S +++ L +Y+P+R Sbjct: 62 YLLHDMAKAVPRIRQAIEEGERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFT 121 Query: 133 DGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 DGYGPN S+ + FI + LIITVD G ++A++YA Q +DVIV DHH + E A Sbjct: 122 DGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQEQEVDVIVTDHHSLPEELPEA 181 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +A+++P D HL GV F + + L LDLVA+ T+ Sbjct: 182 FAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLP-----------TDCLDLVAIGTIA 230 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS------SPITAENLGYMIGPSI 305 D+V L G NR V GL + + GL+ L+ +S + +G+ I P + Sbjct: 231 DMVSLTGENRVLVKNGLAMLKHTERVGLQELMSLELMSLSPIDLEHFNEDAIGFQIAPQL 290 Query: 306 NAGGRIGESNLGSRL 320 NA GR+ + N L Sbjct: 291 NALGRLDDPNPAIEL 305 >gi|320527505|ref|ZP_08028685.1| putative single-stranded-DNA-specific exonuclease RecJ [Solobacterium moorei F0204] gi|320132062|gb|EFW24612.1| putative single-stranded-DNA-specific exonuclease RecJ [Solobacterium moorei F0204] Length = 530 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 132/577 (22%), Positives = 238/577 (41%), Gaps = 58/577 (10%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKA 81 A A+ +K+ I + A++L ++ + + L + Sbjct: 2 KYNVIDVDASALQEKYKIGLLSAKLLKASHLDDEEIHELFETDTALTTSKAAC---IQRC 58 Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 +R++QA N+EK+MI GDYD DG S +M L + YIPDR+ +GYG + Sbjct: 59 CKRLLQARDNNEKVMIAGDYDADGICSTTIMKMTLMKLKIEHGYYIPDRMKEGYGLSAHT 118 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 +E +G LIITVD G ++ A+Q A G+D+I+ DHHQ+ E Y V+PN ++ Sbjct: 119 VELAHQKGYSLIITVDNGVKAHAAIQKANELGVDIIITDHHQIDEEIETPYV-VHPNYME 177 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 + I R L +N + +A + DV+PL R Sbjct: 178 SEFCYLSGAGVAL------QIARNLIGENDIQTA--------FACVAAIADVMPLWKETR 223 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SNLGS 318 V +GL V ++ ++LI +N S I ++ + I P +N+ GR+ + N Sbjct: 224 RIVKRGLAVLKQGR---PRSLISLLNPGSGIDMTSISFSIVPKLNSLGRMSDLANVNTMI 280 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 L+S++ +++ A +++ +N+ R+ + S++ E A + + ++ + + Sbjct: 281 PFLLSNNEEQIAHYATQVNQINEKRKEISSSISETAINMIADE-------KFPILYQEDF 333 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGG 438 H G+ GL+A R+ + RP ++ + GSGRS+ GF++ + L G Sbjct: 334 HEGVCGLVAGRIVSQLHRPVLVMA-KSHNTIKGSGRSVSGFNLFDFFK---DFENLTAFG 389 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA--LITTPVFKIDGVLNASAVNIALIDML 496 GH A G++V F Q+ N +ID ++ I + Sbjct: 390 GHEQAVGISVPIEKFEEFYQQAQEKMANAGYEYIEPVQDAIRIDAE----DIHFNNIIDI 445 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQS----IRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 + PY P FA + + ++V + S +A+ ++ Sbjct: 446 DCFTPYPKEMIEPNFALEDMNVVERKETAKMVK------YLIANSSGGFEAVLYKSRNIA 499 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 + G L ++ WR CQ+ + D Sbjct: 500 APILPK-------RLIGKLSIHRWRNRTTCQMILEDI 529 >gi|46199109|ref|YP_004776.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus HB27] gi|46196733|gb|AAS81149.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus HB27] Length = 666 Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats. Identities = 143/579 (24%), Positives = 235/579 (40%), Gaps = 53/579 (9%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 RW L + + A +R D + L Sbjct: 6 RWRVLPLPPLAQWREVMA-ALEVGPEAALAYWHRGFRRKEDLDPPLALLPL--------K 56 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 +AA + +A+ ++I + GDYD DG A+++R L+ + + +IP R+ +GYG Sbjct: 57 GLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLTALGADVHPFIPHRLEEGYG 116 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + + + L +TVDCG T++ L+ G++VIV DHH P + Sbjct: 117 VLMERVPEHLE-ASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHP 175 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 D + AGV FL+L ++ L L DL A+ T+ DV PL Sbjct: 176 ALTPD---LKEKPTGAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPL 225 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 G NRA V +GL GL+ L E V + A + + I P INA R+GE+ Sbjct: 226 WGWNRALVKEGLARIPASSWVGLRLLAEAVGYTG--KAAEVAFRIAPRINAASRLGEAEK 283 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 RLL+++D+ E + L +L LN R+ +E AML + + +A IV+ Sbjct: 284 ALRLLLTEDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDP 337 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 HPG++G++A+R+ E RP F ++ G G I + + E +L++ Sbjct: 338 EGHPGVMGIVASRILEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLR 390 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 GGH AAG ++ F + +A + + + L + + L Sbjct: 391 YGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFREL 447 Query: 497 ESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGE 555 PYG GNP P+F + R + HL + ++ +A++ L Sbjct: 448 ALLEPYGEGNPEPLFLLFGAP-EEARRLGEGRHLAFRLKG-----VRVLAWKQGDLALPP 501 Query: 556 FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + V G L N W G +++ +D E Sbjct: 502 --------EVEVAGLLSENAWNGHLAYEVQAVDLRKPEA 532 >gi|255600394|ref|XP_002537447.1| Single-stranded-DNA-specific exonuclease recJ, putative [Ricinus communis] gi|223516309|gb|EEF24936.1| Single-stranded-DNA-specific exonuclease recJ, putative [Ricinus communis] Length = 369 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 19/380 (5%) Query: 215 VFLVLVLIYRILRQDNKVPLNF-DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR 273 +F VL+ + L+Q +V L SLLDLVAL TV D+V L NR V +GL R+ Sbjct: 1 MFYVLIALRAELKQRGQVSDEGVHLGSLLDLVALGTVADLVKLDANNRILVRQGLKRIRQ 60 Query: 274 -QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 Q +PG+ A+++ + A++LG+ +GP +NA GR+ + +G R L+++ QE Sbjct: 61 GQASPGILAILKLAGRDFLQVNAQDLGFYVGPRLNAAGRLDDMTIGIRCLLAETPQEAMQ 120 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 A KL VLN R+ +E+ M A A + D Q I V WH G++G+LA+R+K Sbjct: 121 YAQKLHVLNAERKQIEAEMQWDAMADLTQDFRDDQ--YTISVFQPDWHQGVIGILASRIK 178 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVE 449 E+F RP A + DG GSGRSI G + + + +++K GGHAMAAGL++ Sbjct: 179 ERFHRPVIAFADAGDGLIKGSGRSIAGLHLRDALDLVTKQQPDLIIKFGGHAMAAGLSIR 238 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 +F R F++ ++ A V + DG L A + + + + +G G P P Sbjct: 239 ADDFARFQQTFEQVVQRLIDAETLQEVLETDGALAAQEMTLQTAEAIAH-QVWGQGFPQP 297 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 VF ++ +V+ HL++ + + + AI F+ +++ + Sbjct: 298 VFYDT-FQVLQQKVLGEKHLKLRLQKHN-QQFDAIYFQHAEF---------LPEQVEIAY 346 Query: 570 HLCVNYWRGSKRCQLRVLDA 589 L VN + G++ QL+V+ A Sbjct: 347 ALQVNEFNGARNLQLQVVHA 366 >gi|55981136|ref|YP_144433.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus HB8] gi|283135302|pdb|2ZXO|A Chain A, Crystal Structure Of Recj From Thermus Thermophilus Hb8 gi|283135303|pdb|2ZXP|A Chain A, Crystal Structure Of Recj In Complex With Mn2+ From Thermus Thermophilus Hb8 gi|283135304|pdb|2ZXR|A Chain A, Crystal Structure Of Recj In Complex With Mg2+ From Thermus Thermophilus Hb8 gi|55772549|dbj|BAD70990.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus HB8] Length = 666 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 133/505 (26%), Positives = 216/505 (42%), Gaps = 44/505 (8%) Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 ++I + GDYD DG A+++R L+ + + +IP R+ +GYG + + + + Sbjct: 71 QGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-AS 129 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 L +TVDCG T++ L+ G++VIV DHH P + D + Sbjct: 130 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPD---LKEKPT 186 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 AGV FL+L ++ L L DL A+ T+ DV PL G NRA V +GL Sbjct: 187 GAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPLWGWNRALVKEGLAR 239 Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 GL+ L E V + + + I P INA R+GE+ RLL++DD+ E + Sbjct: 240 IPASSWVGLRLLAEAVGYTGKAVE--VAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQ 297 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 L +L LN R+ +E AML + + +A IV+ HPG++G++A+R+ Sbjct: 298 ALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRI 351 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 E RP F ++ G G I + + E +L++ GGH AAG ++ Sbjct: 352 LEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDE 404 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 F + +A + + + L + + L PYG GNP P+ Sbjct: 405 ALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFRELALLEPYGEGNPEPL 461 Query: 511 FAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F + R + HL + ++ +A++ L + V G Sbjct: 462 FLLFGAP-EEARRLGEGRHLAFRLKG-----VRVLAWKQGDLALPP--------EVEVAG 507 Query: 570 HLCVNYWRGSKRCQLRVLDASPVEG 594 L N W G +++ +D E Sbjct: 508 LLSENAWNGHLAYEVQAVDLRKPEA 532 >gi|260655713|ref|ZP_05861186.1| putative single-stranded DNA-specific exonuclease [Jonquetella anthropi E3_33 E1] gi|260629630|gb|EEX47824.1| putative single-stranded DNA-specific exonuclease [Jonquetella anthropi E3_33 E1] Length = 553 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 144/558 (25%), Positives = 226/558 (40%), Gaps = 39/558 (6%) Query: 34 TQKHAIPDIVARVLVNRNVSIDYAKDFLNPS-IRLLMPDPLILTDCDKAARRIVQAIYNS 92 + + VL +R V+ D FL + + + + +AA + A+ Sbjct: 23 ARGLGCSPLCVAVLESRGVAADQIPQFLRQQPLVDQLGSLNLGSGAARAASKWSDAL-RG 81 Query: 93 EKIMIFGDYDVDGAASVALMMRFLSHCS--VNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 + ++++GDYDVDG +S L M L+ S YIP R +GYG + + G Sbjct: 82 KSVLVYGDYDVDGVSSTVLAM-ALAQMSGAARTYYYIPRRSTEGYGLHCEGIRMAAQSGI 140 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 Q +I DCGS + A G+DV++ DHH V E A ALVNP D LC Sbjct: 141 QTVIVTDCGSRDRSEVALAKESGMDVLIFDHHLVDGELAEADALVNPQIDGDGEA-RTLC 199 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 A GV++ Q P LL L+ L LAT+ D +PL LNR + +GL Sbjct: 200 ATGVLWCWAA-------QSGLFPK-ESLLELVQLAGLATIADCMPLEFLNRELIRQGLDS 251 Query: 271 ARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 RR+ GL LI + + + + +L + PS+NA GR+G ++L ++ + Sbjct: 252 MRRRPFGGLGRLISALRLEGASLDERDLAMRLIPSLNAAGRLGAADLAVNVVA--QLGDA 309 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAAR 389 E L +NQ RR + S + + ++ T S V W GI+ +A+R Sbjct: 310 EQNVDSLMKVNQRRRDLSSQIADSLSKQLDT------DCSTQVFFNPSWPVGILSGIASR 363 Query: 390 LKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE 449 L + R FA++ G+ R EG + +++ L GGH AAG +V Sbjct: 364 LCHE-RRQGFALAASTQRGVRGTLRVPEGANAVELLKQL--SDKLDDWGGHQYAAGFSVS 420 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + ++ K + P D + + + L GP+G GNP P Sbjct: 421 AAQWPKVALGLNKLLSQVQPVAERHEAILYD----PLRIEMDDLGDLAKLGPFGNGNPAP 476 Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F P+ + + +T + + L AF G + Sbjct: 477 SFFVPSCADEVYEPLGKDGRHLTVNCRGARLL---AFG------GARQIDDAPGIAGWIY 527 Query: 570 HLCVNYWRGSKRCQLRVL 587 +N WRG + Q V Sbjct: 528 QPRINVWRGRRNVQFVVD 545 >gi|14595119|dbj|BAB61865.1| single-stranded DNA specific exonuclease RecJ [Thermus thermophilus] Length = 666 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 134/505 (26%), Positives = 217/505 (42%), Gaps = 44/505 (8%) Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 ++I + GDYD DG A+++R L+ + + +IP R+ +GYG + + + + Sbjct: 71 QGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-AS 129 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 L +TVDCG T++ L+ G++VIV DHH P + D + Sbjct: 130 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPSPGLVVHPALTPD---LKEKPT 186 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 AGVVFL+L ++ L L DL A+ T+ DV PL G NRA V +GL Sbjct: 187 GAGVVFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPLWGWNRALVKEGLAR 239 Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 GL+ L E V + + + I P INA R+GE+ RLL++DD+ E + Sbjct: 240 IPASSWVGLRLLAEAVGYTGKAVE--VAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQ 297 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 L +L LN R+ +E AML + + +A IV+ HPG++G++A+R+ Sbjct: 298 ALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRI 351 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 E RP F ++ G G I + + E +L++ GGH AAG ++ Sbjct: 352 LEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDE 404 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 F + +A + + + L + + L PYG GNP P+ Sbjct: 405 ALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFRELALLEPYGEGNPEPL 461 Query: 511 FAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 F + R + HL + ++ +A++ L + V G Sbjct: 462 FLLFGAP-EEARRLGEGRHLAFRLKG-----VRVLAWKQGDLALPP--------EVEVAG 507 Query: 570 HLCVNYWRGSKRCQLRVLDASPVEG 594 L N W G +++ +D E Sbjct: 508 LLSENAWNGHLAYEVQAVDLRKPEA 532 >gi|282857440|ref|ZP_06266673.1| putative single-stranded-DNA-specific exonuclease RecJ [Pyramidobacter piscolens W5455] gi|282584725|gb|EFB90060.1| putative single-stranded-DNA-specific exonuclease RecJ [Pyramidobacter piscolens W5455] Length = 555 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 139/572 (24%), Positives = 234/572 (40%), Gaps = 46/572 (8%) Query: 28 NRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLN-PSIRLLMPDPLILTDCDKAARRIV 86 + + ++ ++ A VL +R + + LN P +R + + + A + Sbjct: 17 EKTRDLARRLECSELAAAVLDSRAADEEQFRQLLNVPDLRRQLDELFLGRAASAARELWL 76 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKF 145 +A+ +++ ++GDYDVDG +S + + A YIPDR +GYG +P+ M + Sbjct: 77 KAVP-GKRVFVYGDYDVDGVSSTVIALELAQQSGAAEAVYYIPDRRSEGYGLHPANMRRI 135 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 I +G +I DCGS +A+ A G++V++ DHH + + + +LVNP D Sbjct: 136 IADGFDTLIVTDCGSKDVEAVDLARAAGMNVLIFDHHAAEGDIVRLESLVNPQMDGDAEA 195 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 LCA V++ + + L +L L ALATV D +PL LNR+ Sbjct: 196 -KRLCATAVLWCWAW--------QSHILPENRLAGMLQLAALATVSDCMPLGPLNRSLTR 246 Query: 266 KGLMVARRQGNPGLKALIERVN---ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322 +G+ + RR GL+ L+ + S I L + P +NA GR+ +++ +L Sbjct: 247 EGIKMMRRAPRRGLRELLRSLCPNEPDSMIDENRLSMRVIPCLNAAGRVQVADVAVNVLS 306 Query: 323 S-DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 EL+ +L LN+ RR + A Q V+ W G Sbjct: 307 GLGSPLELQRSVDQLLDLNRRRRDIS------ASICASINAGLEQGDRSQVLFNGSWPVG 360 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 I+ +A+RL + + +FA++ G G+ R G + + + +L GGH Sbjct: 361 ILSAIASRLCNEHNK-AFALAAPSGGGIRGTLRVPGGAN--AVELLKSLDDLLDAWGGHK 417 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 AAG +V+++ + RL NI V + + + A D + GP Sbjct: 418 SAAGFSVDQLKWPRLERELNSLLQNIKVEKTPEEVIEFE----PDRITGAAWDEVLRIGP 473 Query: 502 YGAGNPNPVFAFPNHKLQSIRV----VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 +G GNP P F R + L + IAF E + Sbjct: 474 FGNGNPLPAF----FVPLDSRTTYAPLGKRGLHTRVLFGGNAL---IAFNGA-----EQI 521 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++ G R + N W+G Q V Sbjct: 522 GRTEGIRGWI-YRPRPNLWQGRVSLQYIVEGI 552 >gi|124514660|gb|EAY56172.1| putative RecJ exonuclease [Leptospirillum rubarum] Length = 549 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 230/561 (40%), Gaps = 50/561 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDP---LI 74 W+ + + ++ + I AR L+ R D +F P P Sbjct: 14 WLLPS--VMDSDVSDLAKEIGLDPIWARFLLGRGFHWDSLDEFF------FHPQPPGEES 65 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + D A + A+ I I+ D DVDG S + RFLS + + R +G Sbjct: 66 VGDIRLAQNILGDALDERAPIAIYADLDVDGITSAVMCSRFLSRRQHPHRVLL-VRREEG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +G NP + EG +++I D G ++ LQ A +G+ IV+DHH ++ A+ Sbjct: 125 HGVNPDRILSLPQEGFRVLIVADLGVSNLPLLQEAGRRGLASIVVDHHLLQEPWPNDMAI 184 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 V+P G+ HL A G ++++L + + + + L LA + D Sbjct: 185 VHPQ------GRSHLTAVGCLYVLLRSLVKHPEER----------EMAFLAGLAVLSDRA 228 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 P++ NR +V L + PG++AL+ + + I + + + PS+NA GR+ + Sbjct: 229 PILHENRYFVQALLDREILEAFPGVRALLRK-RVHRKIMINDYSFWVIPSLNAPGRMSDP 287 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 LL++ S E E ++++ +N+ RR E ++ E+A + V+ Sbjct: 288 LPAFHLLMARTSSEAERYSIQVMEMNRRRREAEWSIYEEARRQW---------DGTPVLF 338 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 W PG++G +A RL E+F + F + +G GS R G + ++ EG+ Sbjct: 339 APDWAPGVMGRIAHRLSEEFDQSVFVATLSPNGGVRGSLRLRGGITLSDILKEL--EGLP 396 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNASAVNIAL 492 + GGGH A GL + P + + +ID L AS + + Sbjct: 397 ISGGGHPKAGGLGFPVELLETVRKVLGNILKEPSPCPEVQDSSSLEIDAFLPASYRSPSF 456 Query: 493 IDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTP 552 + L P+G G P P+F N +++ + N + F +A AFR Sbjct: 457 WEGLGKLVPFGEGFPEPLFGIRNVQIERMESTNSRLVLCHFRWSHGTE-KA-AFRQTSN- 513 Query: 553 LGEFLMQSRGKRMHVTGHLCV 573 + G R+ + + Sbjct: 514 -----LPKPGDRVDLVMTPEL 529 >gi|205374211|ref|ZP_03227010.1| single-stranded-DNA-specific exonuclease RecJ [Bacillus coahuilensis m4-4] Length = 269 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 130/278 (46%), Gaps = 15/278 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDP 72 S RW+ E I + Q+ ++ I+A++L NR + D A+ FL S + DP Sbjct: 4 SKSRWLVKEAPEQI--VQTLQQELSVSSIIAKLLYNRGIKDSDTARSFLW-SEKQEFHDP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D A RI ++I E I++FGDYD DG S ++++ L A+ YIP+R Sbjct: 61 FLLKGMDIATDRIKRSIELGEAILVFGDYDADGVTSTSVLLSTLRDLGAEADFYIPNRFN 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + G LIITVD G + A G+D+I+ DHH+ E A Sbjct: 121 EGYGPNENAFRWAYEMGYSLIITVDTGIAAIHEAAVAKELGLDLIITDHHEPGPELPDAL 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+++P + L GV F V +Y + + LLDLV + T+ D Sbjct: 181 AIIHPKLPNSNYPFHELAGVGVAFKVAHALYGHVPE-----------HLLDLVTIGTIAD 229 Query: 253 VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS 290 +VPL G NR+ V +GL + + + Sbjct: 230 LVPLFGENRSLVKRGLKSCNPPTDQAYRHFAKWQGRRW 267 >gi|116327798|ref|YP_797518.1| single-stranded DNA-specific exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331543|ref|YP_801261.1| single-stranded DNA-specific exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120542|gb|ABJ78585.1| Single-stranded DNA-specific exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125232|gb|ABJ76503.1| Single-stranded DNA-specific exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 645 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 120/609 (19%), Positives = 235/609 (38%), Gaps = 83/609 (13%) Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 + L +R L P P +L D + A + + + +KI++FGD D DG +S +L+ FL Sbjct: 45 EHLLYHGLREL-PSPFLLPDLEPALELLKEFVRTEKKILLFGDRDCDGVSSTSLLGGFLK 103 Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI--- 174 + + + YG P+ +E L+IT+D G+T++ + + GI Sbjct: 104 KIH-RGELILKTSNEEDYGLCPAALEFVKKNKPDLLITLDFGTTNHVQINELASLGIKVI 162 Query: 175 ------------DVIVIDHHQVKSEEIPAYALV--------------------NPNRLDD 202 D ++ + S+ + + D Sbjct: 163 VLDHHEIPEQIPDCYLVSPKRQDSQYPSEKICTSVLALKFIQAYLYSSLEEYKHATWIGD 222 Query: 203 LSGQGHLCAAGVVFLVLVLIYRI-------------------LRQDNKVPLNF-----DL 238 + L+ + + F L Sbjct: 223 GNSLFSGYLIYRGKLIFQGDRQEAESKFSIPIQDKSYTFESPYPEREWFYQEFLKYPAIL 282 Query: 239 LSLL---DLVALATVCDVVPLIGLNRAYVVKGLMVARR------QGNPGLKALIERVN-I 288 L DL ++ TV D++PL G NR V +G + + + GL L++ + Sbjct: 283 EQYLQNFDLASIGTVSDMMPLHGENRIIVKEGCKILFKLHRRETRHREGLFQLLQLMELA 342 Query: 289 SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES 348 +T+++LG+++GP IN+ GR+ + + LL+ +D Q + A +L LN+ R+ Sbjct: 343 DKHVTSKDLGWVLGPMINSAGRMNRTEVALNLLLEEDPQRAQTGAKELQKLNEERKERTK 402 Query: 349 AMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK 408 L + + + + + + SV+ + PG+ G++A RL E++ +P I+ + G Sbjct: 403 RNLFKVDGFLKRK-KERTEKSVLFCYEPDFEPGVSGIVATRLVEEYKKPVLFITP-DHGH 460 Query: 409 GIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468 GS R+ ++ ++ A E I ++ GGH A G +++ L + A N + Sbjct: 461 AKGSIRAYGKENVLNLLKKA--ESIFLQFGGHKEAGGFSLDLEKIPELAKTIFEHADNWL 518 Query: 469 PALITTPVFK---IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV- 524 + L +N + L P+G NP P+++ N K+ + + Sbjct: 519 EEEQKQTTLEQTPSLISLRPEELNPKIFQELSIFEPFGHENPVPLYSIKNAKVYHTKPMT 578 Query: 525 NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQL 584 + H++ E++Q + + L + S+ + + + G L + +R Q Sbjct: 579 DGKHVRFRILGAP-ESIQCLIWNRGKDFLE---LLSKNESLDLWGSLEESTFRSKTSLQF 634 Query: 585 RVLDASPVE 593 V E Sbjct: 635 VVNYFQKSE 643 >gi|206602536|gb|EDZ39017.1| Putative RecJ exonuclease [Leptospirillum sp. Group II '5-way CG'] Length = 549 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 131/559 (23%), Positives = 229/559 (40%), Gaps = 46/559 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYA-KDFLNPSIRLLMPDPLILT 76 W+ + + ++ + I AR L+ R D + F +P P + Sbjct: 14 WLLPS--VMDSDVSNLAREIGLDPIWARFLLGRGFHWDSLDESFFHPQ----PPGEESVG 67 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D A + A+ I I+ D DVDG S + RFLS + + R +G+G Sbjct: 68 DIRLAQNILWDALDEQAPIAIYADLDVDGITSAVMCSRFLSRRQHPHRVLL-VRREEGHG 126 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 NP + EG +++I D G ++ LQ A +G+ IV+DHH ++ A+V+ Sbjct: 127 VNPDRILSLPQEGFRVLIVADLGVSNLPLLQEAGRRGLSSIVVDHHLLQEPWPNDMAIVH 186 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 P G+ HL A G ++++L + + + + L LA + D P+ Sbjct: 187 PQ------GRSHLTAVGCLYVLLRSLV----------DHPEEREMAFLAGLAVLSDRAPI 230 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 + NR +V L PG++AL+ + + I + + + PS+NA GR+ + Sbjct: 231 LHENRYFVQALLDREILDAFPGVRALLRK-RVHRKIMINDYSFWVIPSLNAPGRMSDPLP 289 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 LL++ S E E +M++ +N+ RR E ++ E+A + V+ Sbjct: 290 AFHLLMARTSSEAERYSMQVMEMNRRRREAEWSIYEEARRQW---------DGTPVLFAP 340 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 W PG++G +A RL E+F + F + +G GS R G + ++ EG+ + Sbjct: 341 DWAPGVMGRIAHRLSEEFDQSVFVATLSPNGGVRGSLRLRGGITLSDILKEL--EGLPIS 398 Query: 437 GGGHAMAAGLTVERVNFGRLCDFFQKFAHNI--VPALITTPVFKIDGVLNASAVNIALID 494 GGGH A GL + P + + +ID L AS + + + Sbjct: 399 GGGHPKAGGLGFPVELLETVRKVLGNILKEPSPCPEVQDSSSLEIDAFLPASYRSPSFWE 458 Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLG 554 P+G G P P+F N +++ + N + F +A AFR Sbjct: 459 GFGKLVPFGEGFPEPLFGIRNVQIERMESTNSRLVLCHFRWSHGTE-KA-AFRQTSN--- 513 Query: 555 EFLMQSRGKRMHVTGHLCV 573 + G R+ + + Sbjct: 514 ---LPKPGDRVDLVMTPEL 529 >gi|76799589|ref|ZP_00781713.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus agalactiae 18RS21] gi|76585059|gb|EAO61693.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus agalactiae 18RS21] Length = 252 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 135/259 (52%), Gaps = 15/259 (5%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 + WV + A ++K I + VA ++ +R + + FL ++ L DP + Sbjct: 6 YSWVLNNQKPDAGFFEA-SKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLH-DPYL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI +AI N+E I+++GDYD DG S ++M L +Y+P+R DG Sbjct: 64 LNDMDKAVNRIRRAIENNETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 YGPN S+ + FI + LIITVD G ++A+ YA NQG+DV+V DHH + ++ AYA Sbjct: 124 YGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAITYAQNQGVDVVVTDHHSMPADLPCAYA 183 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +++P D +L GV F V + + +LDLVA+ T+ D+ Sbjct: 184 IIHPEHPDANYPFPYLAGCGVAFKVACALLETIP-----------TEMLDLVAIGTIADM 232 Query: 254 VPLIGLNRAYVVKGLMVAR 272 V L NR V GL V + Sbjct: 233 VSLTDENRIMVKAGLEVMK 251 >gi|317133764|ref|YP_004089675.1| phosphoesterase RecJ domain protein [Ruminococcus albus 7] gi|315450226|gb|ADU23789.1| phosphoesterase RecJ domain protein [Ruminococcus albus 7] Length = 553 Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats. Identities = 135/523 (25%), Positives = 217/523 (41%), Gaps = 43/523 (8%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A + A +KI +F DYD DG S +M L ++ +Y P R + GYG Sbjct: 43 ADYLRNASDTKKKIAVFADYDCDGICSAVIMHVILKSLQIDFKIYFPKRGI-GYGLQKRY 101 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYALVNPNRL 200 ++ I+E +IT+D G ++++ + A +G+DVIVIDHH Q A +V+P+ Sbjct: 102 ID-MIDEKYDAVITIDNGISAFEGIDAAKARGMDVIVIDHHLQSPEGLPNADIIVDPHVF 160 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN 260 + C AG+ + + LI RQ L A ATV DVVPL N Sbjct: 161 KEKENFEDWCGAGLGYELSKLICDEKRQKVC----------LQFAAFATVADVVPLRFNN 210 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVN--ISSPITAENLGYMIGPSINAGGRIGESNLGS 318 R V GL + + LI + + +G+ IGP INA GR+ + Sbjct: 211 RTIVKNGLELINNSSVNSIHLLINEITGLGKPNVDETTIGFKIGPIINAMGRVEDDAEYV 270 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 + + E + + N+ R+ + +E+A+ V+ +C + + + Sbjct: 271 YRYFTSGNPE---MLQHMVDNNEVRKELVIQAVERAQNIVVEECLFSDVPKI--IYDPKT 325 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKG 437 GIVG++A RL E + P ++ E G GS RS E +I + + L+ Sbjct: 326 IEGIVGVVAGRLTETYKSPVICLTDSETPGVIKGSARSTEDINIKEALDKV--SDHLLHY 383 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 GGHA AAGL+++ + D F + + D +NA + + +L+ Sbjct: 384 GGHAGAAGLSLKIDELDNIRDCFFSIFEDF--EVQEKDEIFYDLEINAEEI-PDTLSLLK 440 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ-------AIAFRVYG 550 + P+G GN PVF N K R L D + L+ AI F Sbjct: 441 AYAPFGEGNRPPVFKINNFKCL-PR---NGKL-FQILGDDGKALKLFGNGCIAIGFDAVE 495 Query: 551 TPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 +F + K + + G + N + G Q+ + D V Sbjct: 496 ----KFNSLNMPKTLDIIGVISENNY-GKPEAQIEISDFKKVT 533 >gi|196227972|ref|ZP_03126839.1| phosphoesterase RecJ domain protein [Chthoniobacter flavus Ellin428] gi|196227375|gb|EDY21878.1| phosphoesterase RecJ domain protein [Chthoniobacter flavus Ellin428] Length = 345 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 160/313 (51%), Gaps = 12/313 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPLIL 75 RW+ + + + A +L+ R +S A+ FL P ++ L DP +L Sbjct: 3 RWIF-PQPIDSSEVKRFAGELGVARFAAELLMRRGLSSAMDAEHFLAPRLKSLR-DPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + AA RI+ AI E+I+++GDYDVDG S+AL+ R L ++P R +GY Sbjct: 61 PNMGLAAERILTAIDRRERIVLYGDYDVDGVTSLALLTRVLRAMGAEPACFLPSRADEGY 120 Query: 136 GPNPSLMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 G +P + + + QL+I VDCG++S + QG+DVIV DHH+ K AL Sbjct: 121 GLSPDGVARCVSEHDPQLVIAVDCGTSSVAEIAALRAQGVDVIVCDHHECKDALPDCVAL 180 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 VNP DD +LC+ G+ F V + + LR+ N DL LDLVAL +V D+V Sbjct: 181 VNPKLGDD---FHYLCSVGIAFKVAHALLK-LRKANDF----DLRECLDLVALGSVADLV 232 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 PL NR +V GL+ + GL+AL+E +S+P + N+G+ +GP +NA + Sbjct: 233 PLRSENRIFVRNGLLQLAQSKWVGLRALVEVSGLSAPFSPGNIGFGLGPRLNAARTPRDR 292 Query: 315 NLGSRLLISDDSQ 327 + L + Sbjct: 293 ARCTGALAHRGCR 305 >gi|218961556|ref|YP_001741331.1| hypothetical protein CLOAM1265 [Candidatus Cloacamonas acidaminovorans] gi|167730213|emb|CAO81125.1| hypothetical protein CLOAM1265 [Candidatus Cloacamonas acidaminovorans] Length = 520 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 106/483 (21%), Positives = 186/483 (38%), Gaps = 22/483 (4%) Query: 36 KHAIP-DIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEK 94 I D++ +++ +RN++ + L ++PD + + DK R+ A++ +E Sbjct: 9 NINISNDLLNQIIKSRNLTSLNLQTNL-----EMLPDEKLFANIDKVENRMRIALFENEP 63 Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 ++IFG D DG S ++ FL+ C YIP+R ++ +G +E +LI Sbjct: 64 MVIFGHDDPDGITSTYILYNFLNSCGYQKHCYYIPNRNLEPHGIQDGFIEFVRQNDYRLI 123 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 +TVD G S + ++ G +VI+ DHH PA+ ++NP + L Sbjct: 124 VTVDNGIVSKEGVKNLNAMGCEVIITDHHIVQPDMLPPAFTIMNPQLPECPYPFKQLAGV 183 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 GVV +++ + ++ + F A+ ++ D VP+IGLNR V L Sbjct: 184 GVVLMLIRYLGQLWNHPVEPASYFW-------TAVGSIADKVPMIGLNRILVRYVLEHFD 236 Query: 273 RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + + L+ N + ++ + A GR + I S Sbjct: 237 EVQDETVTFLLRNYNRINTMSDIFSFLQYTSHLIANGREPNGQHTAMRFILQLSDA---K 293 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 A + L + ES L + + T D + + + P + AA Sbjct: 294 ARLFEDLESQKNKWESE-LNRIFKFMDTLATDFVGNWFVYYDDEDVIPYTLLGTAATYVV 352 Query: 393 KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVN 452 I +G + GR E F+I + + L + GGH AAG T++ + Sbjct: 353 SKLHIPAIILKYNNGVTVCEGRCGEDFNIMDAFTHC--KKHLAQFGGHPRAAGFTMKPEH 410 Query: 453 FGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFA 512 + + F F + D + +N LE P+G NP P F Sbjct: 411 YDAFLECFNSFLQKNYHP-SKQEILSYDAEVCPKDLNWDNWKKLEILLPWGQLNPEPSFL 469 Query: 513 FPN 515 N Sbjct: 470 IRN 472 >gi|257468342|ref|ZP_05632436.1| single-stranded-DNA-specific exonuclease recJ [Fusobacterium ulcerans ATCC 49185] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 229/463 (49%), Gaps = 18/463 (3%) Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + +GYG + ++ E +L+ITVD G S + ++YA + GIDVIV DHH+ EE Sbjct: 1 MEEGYGLDKKTIDFINKEKGKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEED 60 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 + L+ +L D +L AGV V +Y+ L+ D DL +D+V + TV Sbjct: 61 DHLLLLNPKLSDTYEFKYLSGAGVALKVAQGVYQKLKID-----IKDLHQYMDIVMIGTV 115 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGG 309 DVVP+ NR + +GL ++ GL L++ + + I ++ Y I P IN+ G Sbjct: 116 ADVVPMTDENRIIIKQGLRALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLG 175 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G S +G+ + +D E+ + ++ N+ RR +E + ++A ++ ++ Sbjct: 176 RVGISKMGADFFLKEDDFEIYNIIEEMKKSNKKRRELEKNIYDEANQEIAK--VGLKNLK 233 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 I + ++WHPG++G++++RL K+ P ++F++ G G S RS++G I F Sbjct: 234 CIFLSSEKWHPGVIGVVSSRLSVKYNIPVTLVAFKD-GIGKASCRSVKG--ISVFNIFQN 290 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 LV+ GGH +AAG V+ NF + + F+ N + KID + ++ Sbjct: 291 MGKKLVRFGGHDLAAGFIVKSENFEEVKNIFEASIEN-IKIEKEKKSLKIDTEYSIENID 349 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFR 547 + + +ES PYG NP+P+F + ++I+ H ++ + +AF Sbjct: 350 EDMFETMESISPYGLENPHPLFIDRDLSFETIKKFGVDERHFNGIIR-KNGKNYHMVAFD 408 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G + E +++ ++ + + +RG + Q+RV D Sbjct: 409 L-GHKINEI--EAKIQKFDIVYYPEKTLYRGEEIFQIRVKDIK 448 >gi|283769652|ref|ZP_06342548.1| putative single-stranded-DNA-specific exonuclease RecJ [Bulleidia extructa W1219] gi|283103920|gb|EFC05306.1| putative single-stranded-DNA-specific exonuclease RecJ [Bulleidia extructa W1219] Length = 523 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 129/588 (21%), Positives = 236/588 (40%), Gaps = 81/588 (13%) Query: 18 WVSLLGQEGINRALAITQKH---------AIPDIVARVLVNRNVSIDYAKDFLNPSIRLL 68 W + ++ + K I ++++ +R + A LN Sbjct: 2 WHKRIIEQNPYPVDNLVGKLLSMVSQDKEKIHEVLS---SSRQIMYSKAACVLNG----- 53 Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +R+ +A N EK++I GDYD DG S A+M L + YIP Sbjct: 54 -------------VQRLKKAKENKEKVLIAGDYDCDGVCSTAIMKYSLDQYGILNGYYIP 100 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 DR+ +GYG +E +G LIITVD G ++ A++ A GI+VIV DHHQ++ Sbjct: 101 DRVKEGYGLQVHTVELAKEKGYSLIITVDNGVKAFAAIEKAKELGIEVIVSDHHQIEEP- 159 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 +P LV+P+ ++ + AGV + + ++ ++ L +A Sbjct: 160 VPVDILVHPDLMEKEY--RYFSGAGVALQISYYLIGEAKE------------MVVLAGVA 205 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + DV+P R + K + + + AL + V + I + + + I P +N+ Sbjct: 206 ALGDVMPPFAQTRPLIQKAVQYLQEG---YMPALQKLVPKGNQINVQTIQFSIIPKLNSL 262 Query: 309 GRIGE---SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDI 365 GR+ N L++ + + +A ++D +NQ R+ + ++ E KV Sbjct: 263 GRMSHLANVNQLVLYLLTRNEEAQIKMAKQIDHINQERKKVSQIKAKELEEKV------- 315 Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 Q ++ V+ G+ GL+A R+ K RP ++ + GSGRSI G ++ + + Sbjct: 316 QDQAIEVLYDPDLLEGVCGLIAGRITNKINRPCLVLTKTDGDMIKGSGRSIPGVNLFEAL 375 Query: 426 SFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNA 485 + GGH A GL+V NF + + V + I+ Sbjct: 376 K---DFEFYEAFGGHEQACGLSVLEENFSAF-ENYVAEIQLAVNQEVGKEALWIETE--- 428 Query: 486 SAVNIALIDMLESAGPYGAGNPNPVFAFPN---HKLQSIRVVNLAHLQMTFESQDSETLQ 542 + + L PY + NP + ++ + + FE + E ++ Sbjct: 429 -DFSFQAVQSLMKLEPYPSEWKNPFVWIEHPSQIVFRNYPSMQ----KYEFEV-NGEKVE 482 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 A+ +Q+ K + G L +N +R ++ Q+ + D Sbjct: 483 AV-------LYANKGIQADSKATNFIGTLSMNSFRNQEKIQMIIEDLW 523 >gi|256004891|ref|ZP_05429865.1| phosphoesterase RecJ domain protein [Clostridium thermocellum DSM 2360] gi|255991201|gb|EEU01309.1| phosphoesterase RecJ domain protein [Clostridium thermocellum DSM 2360] Length = 318 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 9/301 (2%) Query: 40 PDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++VAR+ NR + + + LNP + + P D +A RI++A N EKI ++ Sbjct: 25 DELVARIFYNRGYKNPETIRQMLNPELY-VPTKPDEFPDMPRAVDRILRAADNEEKICVY 83 Query: 99 GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 GDYDVDG S ++ L+ + ++PDR +GYG N ++ K +G LIIT DC Sbjct: 84 GDYDVDGVTSTVTLVECLNFFTSKVVYHVPDRFTEGYGMNEEIVRKLAQDGVSLIITCDC 143 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G ++ + A G+DV++ DHH V E PA A++NP L++ ++ G+V+ + Sbjct: 144 GISNVREITLAKELGMDVVLTDHHTVPDELPPADAILNPKLLEEGHRARNISGCGMVYFL 203 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278 + + LD++AL+ + DVV L G NR + K L G Sbjct: 204 CLALLEKKG------FPDRAERFLDMLALSLIADVVSLNGENRYLLQKALPALFNTRRIG 257 Query: 279 LKALIERVNISSPI-TAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLD 337 L+ L+E + + E++ + I P INA GR+ + L L ++ + KL Sbjct: 258 LRQLLEVAERNGKLENEEDVAFQIAPRINAAGRMDTARLPVELFYVRTWKKHALWLRKLT 317 Query: 338 V 338 Sbjct: 318 H 318 >gi|24215698|ref|NP_713179.1| single-stranded DNA exonuclease [Leptospira interrogans serovar Lai str. 56601] gi|24196869|gb|AAN50197.1| single-stranded DNA exonuclease [Leptospira interrogans serovar Lai str. 56601] Length = 643 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 114/608 (18%), Positives = 222/608 (36%), Gaps = 81/608 (13%) Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 + L +R L P P +L D + A + + I +KI++FGD D DG +S +L+ FL Sbjct: 44 EHLLYHGLREL-PSPFLLPDLEPALDLLKEFIQKEKKILLFGDRDCDGVSSTSLLGSFLK 102 Query: 118 HC----------------------------------------------------SVNA-- 123 + Sbjct: 103 KIHRGELILKTSNEEDYGLCPAALDFVKRIKPDLLITLDFGTTNHIQIDELASIGIKVIV 162 Query: 124 --NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + IP+RI D Y +P + + + D Sbjct: 163 LDHHEIPERIPDCYLISPKRSDSIYPNEKICTSVLALKFIQAYLYSSLEEYNRATWIGDG 222 Query: 182 HQ--VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 + L +R + S R + L Sbjct: 223 NSLFSGFLIYRGKLLFQGDRQEAESKFSLTIQDESYSFQSSYPEREWFYQEFLKYPAILE 282 Query: 240 SLL---DLVALATVCDVVPLIGLNRAYVVKGLMVARR------QGNPGLKALIERVNI-S 289 L DL ++ TV D++PL G NR V +G + + GL L++ + Sbjct: 283 QYLQNFDLASIGTVSDMMPLYGENRIIVREGCKILFKLHKKETSHREGLFQLLQLMEFAD 342 Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 + +T+++LG+ +GP IN+ GR+ +++ LL+ ++ + + A +L LN+ R+ Sbjct: 343 NRVTSKDLGWGLGPMINSAGRMNRTDVALNLLLEENPELAKSGAKELQKLNEERKERTKR 402 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + + ++ + + + + SV+ + PG+ G++A RL E++ RP I+ + G Sbjct: 403 NIFKVDSFLKRK-KERTERSVLFCYEPDFEPGVSGIVATRLVEEYKRPVLFITP-DHGHA 460 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GS R+ ++ ++ A E + ++ GGH A G ++E L A N + Sbjct: 461 KGSIRAYGKENVLNLLKKA--ESVFLQFGGHKEAGGFSLEIDKIPELAKLIFDNADNWLA 518 Query: 470 ALITTPVFK-IDGVLN--ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-N 525 T + + +++ +N + L P+G NP P+++ N K+ + + + Sbjct: 519 EEQMTSTSEQTESLISLKPEELNPKIFQELSIFEPFGHENPIPLYSIKNAKIYHTKPMTD 578 Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 H++ E++Q + + L + S+ + + G L + +R Q Sbjct: 579 GKHVRFRILGAP-ESIQCLIWNRGKDFLE---LISKSVSLDLWGSLEESTFRSKTSLQFI 634 Query: 586 VLDASPVE 593 V E Sbjct: 635 VNYFQESE 642 >gi|56751012|ref|YP_171713.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus PCC 6301] gi|81299328|ref|YP_399536.1| exonuclease RecJ [Synechococcus elongatus PCC 7942] gi|56685971|dbj|BAD79193.1| single-stranded DNA-specific exonuclease [Synechococcus elongatus PCC 6301] gi|81168209|gb|ABB56549.1| exonuclease RecJ [Synechococcus elongatus PCC 7942] Length = 775 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 141/559 (25%), Positives = 249/559 (44%), Gaps = 46/559 (8%) Query: 41 DIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT-DCDKAARRIVQAIYN-SEKIMI 97 +++A+++ R + + FLNP R L P + D A R++QA N ++++I Sbjct: 31 EVLAQLIWQRQLATPASLAGFLNPD-RYLPTGPEAFGVEMDGAIARLLQAHANPDDRLLI 89 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 +GD+D DG + A++ L IPDR+ +G N +E+ I G L+I Sbjct: 90 WGDFDADGLTATAVLWEGLGQYFPQTERLFWTIPDRLQQSHGLNLEGLEQAIANGITLVI 149 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 T D G + + LQ+A+++G+DVIV DHH + E P AL+NP +L L V Sbjct: 150 TCDTGCSDAELLQWASDRGLDVIVTDHHTLLPERPPVTALINPRQLPTDHPLATLSGVAV 209 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM----- 269 + ++ +Y+ L P L LLDLVA+ + D+V L G R +GL Sbjct: 210 AYKLIEALYQALPLATAQP----LEHLLDLVAIGLIADLVDLRGDCRYLAQRGLQQLQQL 265 Query: 270 ---VARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGR-IGESNLGSRLLISDD 325 + PG+ L+ R S ++ + +GP +NA R G+++L +LL S D Sbjct: 266 AQVRPQASRRPGITELLNRCRGSGD-RPTDIRFGLGPRLNAVSRLQGKADLALQLLTSRD 324 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385 LA +++ LNQ R+ ++ +L + E ++ Q + +V+ G+ WH G++GL Sbjct: 325 PTAARRLAQQVEELNQRRQRLQRDLLRELEPQIQQQR----DRAALVLVGEGWHGGLLGL 380 Query: 386 LAARLKEKFGRPSFAISFEEDGKG----IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 +A+++ + +P+ +S + GS RSI G ++ ++ A + +L++ GGH Sbjct: 381 VASQVAHREDKPTLVLSLDPPKTQPRLARGSARSITGLNLYEL--LANQRSLLLRFGGHP 438 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 AAGLT+ + L + ++ P + + ++ + ++ L L + P Sbjct: 439 QAAGLTLIDEHLPLLREALEQRL-QQYPPDRSQAAIAPELTVSVADLDRPLFRALYALEP 497 Query: 502 YGAGNPNPVFAFPNHKLQS--IRVVN-----LAHLQMTFESQDSETLQAIAFRVYGTPLG 554 + P +LQ V + AIA Y Sbjct: 498 C---DRLPQLEVRRCRLQRQWQNSVGSGPYRRQYWTFQITDDRG----AIAQGQYWPESN 550 Query: 555 EFLMQSRGKRMHVTGHLCV 573 + G R + L + Sbjct: 551 AETLPPEGDRCDLVIELDL 569 >gi|45656950|ref|YP_001036.1| single-stranded DNA exonuclease [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600187|gb|AAS69673.1| single-stranded DNA exonuclease [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 643 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 114/608 (18%), Positives = 222/608 (36%), Gaps = 81/608 (13%) Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 + L +R L P P +L D + A + + I +KI++FGD D DG +S +L+ FL Sbjct: 44 EHLLYHGLREL-PSPFLLPDLEPALDLLKEFIQKEKKILLFGDRDCDGVSSTSLLGSFLK 102 Query: 118 HC----------------------------------------------------SVNA-- 123 + Sbjct: 103 KIHRGELILKTSNEEDYGLCPAALDFVKRIKPDLLITLDFGTTNHIQIDELASIGIKVIV 162 Query: 124 --NMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + IP+RI D Y +P + + + D Sbjct: 163 LDHHEIPERIPDCYLISPKRSDSIYPNEKICTSVLALKFIQAYLYSSLEEYNRATWIGDG 222 Query: 182 HQ--VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 + L +R + S R + L Sbjct: 223 NSLFSGFLIYRGKLLFQGDRQEAESKFSLTIHDESYSFQSSYPEREWFYQEFLKYPAILE 282 Query: 240 SLL---DLVALATVCDVVPLIGLNRAYVVKGLMVARR------QGNPGLKALIERVNI-S 289 L DL ++ TV D++PL G NR V +G + + GL L++ + Sbjct: 283 QYLQNFDLASIGTVSDMMPLYGENRIIVREGCKILFKLHKKETSHREGLFQLLQLMEFAD 342 Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 + +T+++LG+ +GP IN+ GR+ +++ LL+ ++ + + A +L LN+ R+ Sbjct: 343 NRVTSKDLGWGLGPMINSAGRMNRTDVALNLLLEENPELAKSGAKELQKLNEERKERTKR 402 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + + ++ + + + + SV+ + PG+ G++A RL E++ RP I+ + G Sbjct: 403 NIFKVDSFLKRK-KERTERSVLFCYEPDFEPGVSGIVATRLVEEYKRPVLFITP-DHGHA 460 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GS R+ ++ ++ A E + ++ GGH A G ++E L A N + Sbjct: 461 KGSIRAYGKENVLNLLKKA--ESVFLQFGGHKEAGGFSLEIDKIPELAKLIFDNADNWLA 518 Query: 470 ALITTPVFK-IDGVLN--ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-N 525 T + + +++ +N + L P+G NP P+++ N K+ + + + Sbjct: 519 EEQMTSTSEQTESLISLKPEELNPKIFQELSIFEPFGHENPIPLYSIKNAKIYHTKPMTD 578 Query: 526 LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLR 585 H++ E++Q + + L + S+ + + G L + +R Q Sbjct: 579 GKHVRFRILGAP-ESIQCLIWNRGKDFLE---LISKSVSLDLWGSLEESTFRSKTSLQFI 634 Query: 586 VLDASPVE 593 V E Sbjct: 635 VNYFQESE 642 >gi|295111723|emb|CBL28473.1| Single-stranded DNA-specific exonuclease [Synergistetes bacterium SGP1] Length = 547 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 134/572 (23%), Positives = 239/572 (41%), Gaps = 44/572 (7%) Query: 28 NRALAITQKHAIPDIVARVL--VNRN--VSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 ++ + ++ A VL + + + I A+D++NP L+ + A Sbjct: 12 ESTRSLARCVPCSELTAMVLQMMQQGGVMDIADAQDWMNPKFERLLDSLDL--GAASAVA 69 Query: 84 RIV-QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 R A + ++I+GDYD DG +S L M H +V +IP R V GYG N ++ Sbjct: 70 RDKWNAKSSLGNVLIYGDYDTDGISSTVLAMEIFRHKAVQVRYFIPRRDVQGYGLNAEVL 129 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 E+ + G ++ VDCG+ + L+ +G+DV V DHH V PA+ + D Sbjct: 130 EQVVRGGCNTLVVVDCGTNDSEMLEDLERRGLDVFVFDHHAVAE--APAFQAIVNPCADG 187 Query: 203 LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRA 262 LCA V++ + L LDLVALAT+ D +PL LNR+ Sbjct: 188 GGKARKLCATAVLWCWAW--------KEGILPRDWLKYALDLVALATISDCMPLNSLNRS 239 Query: 263 YVVKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 +V +G+ + R GL AL R+ ++ IT E L + P +NA GRI +++ R L Sbjct: 240 FVRRGMRLMRTNPRRGLGALFSRLRLNARQITEEQLSMRVIPCLNAPGRISCADVSVRAL 299 Query: 322 ISDDSQEL-EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 + + A +L +N+ R+ ++ + + V+ + W Sbjct: 300 LGVGGDDAVYECAGELIKMNRRRQ--------MISERIAGNIRESGEDDRHVMFDESWPV 351 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGH 440 G++ +A+R+ + R + A++ K G+ R G + ++S +L GGH Sbjct: 352 GVLSGVASRICAQ-RRSAVALAAPVGEKVRGTLRVPTGGNAVGILSE--ISDLLDAWGGH 408 Query: 441 AMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAG 500 AAG +V N+ + + ++ L+ + +++ + + G Sbjct: 409 RYAAGFSVLARNWDEVEGRLEGLLADVGVEDEVVSAIN----LSPARISLDDWRTVTALG 464 Query: 501 PYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQS 560 P+G NP P+F + + + + + L AF L + Sbjct: 465 PFGNDNPCPLFYCASSGEDRVEPLGKDGKHSAVRVDNVKLL---AFNAAPD-----LQDT 516 Query: 561 RGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G + H ++YWR ++ Q + D + V Sbjct: 517 SGIKGW-VYHPRLDYWRNEEQIQFIL-DYAVV 546 >gi|269792824|ref|YP_003317728.1| phosphoesterase RecJ domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100459|gb|ACZ19446.1| phosphoesterase RecJ domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 545 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 140/552 (25%), Positives = 241/552 (43%), Gaps = 45/552 (8%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIR-LLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++ V R + +L ++ L PL + +A + I + E+++I+ Sbjct: 23 SQFLSAVAGIRGWGEEEFLSWLWADLQQELEAIPLAEPEV-RALQVISS-VRPGERVIIY 80 Query: 99 GDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 GDYDVDG ++ L M + +IP R ++GYG + + K G L++ VDC Sbjct: 81 GDYDVDGLSATTLAMELMLARGAAVRYFIPHRFLEGYGFHVNTARKIAARGCDLLLVVDC 140 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 G+ +AL+ GI +V DHH +P LVNP+ D + LCAAGV++ Sbjct: 141 GTKDVEALEVIDQAGIPTVVFDHHTPGDG-LPKGVLVNPHCFDLPTPLTALCAAGVLWSW 199 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQGNP 277 + +++ + LDL LATV D + L LNR V +GL + RR Sbjct: 200 IW--------RSRIMDRSWTAARLDLACLATVADCMDLSVPLNRCIVKEGLKLIRRSPRR 251 Query: 278 GLKALIERVNISSP-ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 G+ AL+ R+ + + E L + P +NA GR+ + RLL D +E L ++ Sbjct: 252 GIGALLGRLGVEPQDVDEEVLSMKLIPCLNAPGRLDLAEEAVRLLYPGDGS-VEPLVDRV 310 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 LN+ RR + S +++ A+ + V G W G++ +A+RL GR Sbjct: 311 LSLNEERRRLSSVIMKDAQGDLDR----------HVYHGKDWPVGVLSSVASRLCNDRGR 360 Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456 P ++ DG G+ R G + + +L GGH AAG +V+R ++ + Sbjct: 361 PVALVAPAGDGL-RGTLRIPNGAG-DAVKILSRMSHMLSAFGGHRCAAGFSVQRHHWEAV 418 Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP-N 515 + + + V ++ ++ + L++ GP+G GNP P+ P Sbjct: 419 REGLEAALRELPSDRCRLDVIHW----PLDRIDQSMEEDLDALGPFGMGNPAPLLYHPGG 474 Query: 516 HKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 +++ + +Q E +AF +PL M++RG + + Sbjct: 475 FQVE---PMGRTGRVSKLLAQGREI---VAF---ASPLELQGMEARG----IVYRPKMEA 521 Query: 576 WRGSKRCQLRVL 587 WRG +R +L + Sbjct: 522 WRGRRRLKLYLE 533 >gi|325525094|gb|EGD02987.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia sp. TJI49] Length = 343 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 118/356 (33%), Positives = 173/356 (48%), Gaps = 20/356 (5%) Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISSPITA-ENLG 298 +LDLVAL TV DVV L G NR V +GL R + PG+ AL + + +LG Sbjct: 1 MLDLVALGTVADVVRLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLG 60 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + +GP +NA GR+ + +LG LI+DD LA +LDV+N+ RR +E+ M +QA A + Sbjct: 61 FGLGPRLNAAGRLSDMSLGIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADL 120 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGRSI 416 D A I + WH G++G++A RLKEKF RPSF + ++ GSGRSI Sbjct: 121 AD--VDPADACTITLFNPEWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSI 178 Query: 417 EGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 GF + + E +LV GGHAMAAG+T++ N R F+ A + Sbjct: 179 PGFHLRDALDLVSKREPDLLVAFGGHAMAAGVTLDADNVPRFAAAFEAVAREWLSDDALA 238 Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE 534 V + DG L + + +L+ +G G P P+F+ + S +V HL++ Sbjct: 239 RVIETDGELEDAYFTPQFVGLLDE-AVWGQGFPAPLFSGE-FDVVSQSLVKEKHLKLQL- 295 Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + AI F L + L + W G R QL V A+ Sbjct: 296 ARGRQRFNAIWFNHTEPLPASAL---------IAYRLVADTWNGVTRVQLIVEHAA 342 >gi|167720341|ref|ZP_02403577.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei DM98] Length = 344 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 117/356 (32%), Positives = 176/356 (49%), Gaps = 20/356 (5%) Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITA--ENLG 298 LLDLVAL TV DVV L G NR V +GL R A + R +A +LG Sbjct: 3 LLDLVALGTVADVVRLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAARDARSASGFDLG 62 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + +GP +NA GR+ + +LG L +DD LA +LD +N+ RR +E+ M +QA A + Sbjct: 63 FGLGPRLNAAGRLSDMSLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADL 122 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK--GIGSGRSI 416 + D +A+ I + WH G++G++A RLKE+F RP+F + +DG GSGRSI Sbjct: 123 AS--VDPAEAATITLFNPEWHQGVIGIVAGRLKERFHRPAFTFAHADDGGARVKGSGRSI 180 Query: 417 EGFDIGKMVSFA--VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 GF + + E ++V GGHAMAAG+T+E N R F+ A + Sbjct: 181 PGFHLRDAIDLISKREPDLIVTFGGHAMAAGVTLETANVPRFAAAFETVAREWLSDDALA 240 Query: 475 PVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE 534 V + DG L + ++++L+ A +G G P P+F+ + S +V HL++ Sbjct: 241 RVIETDGDLEDAYFTPQVVELLD-AAVWGQGFPAPLFSGE-FDVASQALVKDKHLKLQL- 297 Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ + AI F R + L + W G+ R QL V A+ Sbjct: 298 TRGRQRFNAIWFNHAE---------PLPARATLAFRLASDTWNGTTRVQLIVEHAA 344 >gi|205374212|ref|ZP_03227011.1| single-stranded-DNA-specific exonuclease [Bacillus coahuilensis m4-4] Length = 450 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 160/313 (51%), Gaps = 13/313 (4%) Query: 292 ITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAML 351 + E +G+ IGP +NA GR+ +++ LL++DD +E +A ++D +N+ R+ + S + Sbjct: 4 LNEEGVGFTIGPRLNAIGRLSDADPAVDLLLTDDMEEALAIAEEIDQMNKERKNIVSTIT 63 Query: 352 EQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE-EDGKGI 410 E+A V TQ ++ SV+V+ + W+PG+VG++A+RL ++F RP+ + + E G Sbjct: 64 EEAIEMVETQFP-LEDHSVLVLAKEGWNPGVVGIVASRLVDRFYRPTIVLGIDSEKGIAK 122 Query: 411 GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 GS RSI GFD+ + + +L GGH MAAG+T+ + L A + Sbjct: 123 GSARSIVGFDL--FQNLSTMRELLPHFGGHPMAAGMTLNIEDVNELRARLNTLAKETLTE 180 Query: 471 LITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAH 528 P+ ++D + V++ I+ L+ PYG GNP P F N + +++ + H Sbjct: 181 EDFVPLTEVDTHVTLDEVSLKSIEELDLLSPYGMGNPKPKFVIDNVHIGNMKKIGGNGNH 240 Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRG-KRMHVTGHLCVNYWRGSKRCQLRVL 587 L++ + +L I F LGE Q ++ + G L +N W K+ QL + Sbjct: 241 LKLNVIH-NGTSLDGIGF-----HLGELTEQLSPVSQISLMGELAINEWNSMKKPQLFIK 294 Query: 588 DASPVEGHHFAKK 600 D + + F + Sbjct: 295 DINVSDWQLFDVR 307 >gi|305432543|ref|ZP_07401704.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli JV20] gi|304444254|gb|EFM36906.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter coli JV20] Length = 385 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 99/409 (24%), Positives = 199/409 (48%), Gaps = 27/409 (6%) Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 + A+A++NP + D +C A V + ++ + + + +D+ L Sbjct: 1 MPQDTLPDAFAIINPKQKDCDFPDIEICGAQVAWYLIAALKEVCKLK------YDMGKFL 54 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 +L+A+A V D++ L LNRA V +G+ + KA+ ++ +N+G++I Sbjct: 55 ELLAIAIVADMMELRDLNRALVRRGIECINKSKRVAFKAI-KQYYQKDKFALDNIGFLIA 113 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P IN+ GR+ ++++ L + D + ++ N++R+ E + E + +++ Sbjct: 114 PLINSAGRMDDASISYEFLHTKDLDKASAYLEQIISFNESRKDEEKQLFEDSLSQI---- 169 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 + S IVV G WH G++G++A+RL + F +P+F S + + GS RS+ DI Sbjct: 170 --DENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNDQ-RLKGSARSVGKIDIL 226 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 ++S A IL GGH AAGL+++ +F + +K I + +I G+ Sbjct: 227 ALISKANF--ILSNYGGHKGAAGLSLDLDSFEKFKTIIKKECMEISQSEFL-DTDEILGI 283 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSET 540 L+ + ++ ++++LES P+G NP P F N +++ + + HL++ ++D++T Sbjct: 284 LDPNEIDFEMLEILESFEPFGHKNPRPFFILENLYVKNKKFLGKDEKHLKLIL-TKDNKT 342 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++A+ F P + + + G + N +RG Q + + Sbjct: 343 IEALFFNFDKEP-------QLYENISLLGSISKNEFRGLATPQFIIKEI 384 >gi|327197905|ref|YP_004306222.1| putative single-stranded DNA exonuclease [Lactococcus phage 949] gi|306009225|gb|ADM73620.1| putative single-stranded DNA exonuclease [Lactococcus phage 949] Length = 593 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 130/625 (20%), Positives = 250/625 (40%), Gaps = 89/625 (14%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + +R + ++L R + ++ ++FL P + P + Sbjct: 3 KWIQKKAKIKADREDDLK---------TKILKARGIPLEDHQEFLFPDEKWENH-PFEIR 52 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM---MRFLSHCS-VNANMYIPDRIV 132 + ++A RI++ I + E I++ GD D DG + A+M ++ L + N + P R Sbjct: 53 NVERAVNRILEGIADKETIVVSGDPDADGITATAIMFNRLKALQDFNEFNLDYIYPQR-D 111 Query: 133 DGYGP------------------------NPSLMEKFIN---------EGAQLIITVDCG 159 G+G + + EK I+ + A ++I +D Sbjct: 112 TGHGLYGQLSVQDHWLNKAEKAKAEKDKESLAKWEKLIDLSRSNIEKTKVADILIVLDSS 171 Query: 160 STSYDALQYATNQG--IDVIVIDHHQVK-----SEEIPAYALVNPNRLDDLSGQGHLCAA 212 S ++ A +D+I++DHH+ ++ L NP+ D S L A Sbjct: 172 SNDLKGVERARTLNPDLDIIILDHHEFDSKEIANKMDKEVILCNPHHHLDESVNKDLSGA 231 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVA 271 G+ + V I +L D DLVA+ V D++ ++ NR + +GL Sbjct: 232 GMAYKVAKGIDEVLDDDGFSN------KFRDLVAIGLVGDMMSVLNFENRYLISQGLQNV 285 Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 G + L + +++GY I P IN+ R+GE L ++L+ D+ + + Sbjct: 286 NNIG--LSRILKGAKINTYRYNTKDIGYSIAPLINSSARMGEIELAFQILMVDNDTDAKK 343 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 L +K+D LN+ R+ + A + +++ VIV++ + + G+ GL+A + Sbjct: 344 LRLKMDKLNKKRQETQK-----AVMQKYEDTQNMEDKIVIVIDSES-NKGMNGLVAQNIA 397 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 +K+ RP F ++ +DG GSGRS F+ + +S V+ GH A GL Sbjct: 398 QKYHRPCFVVTEGKDGICRGSGRSYGSFNTNEFLSEL----DFVEAQGHGQAHGLNFPLD 453 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVL-NASAVNIALIDMLESAGPYGAGNPNPV 510 L ++ ++ + + F D L N + L D++ G P V Sbjct: 454 RLDDLKEYIEENMPDNLETEQ---TFYYDIELENIEEAFMDLTDLININYITGNKFPEVV 510 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 N ++ V+ + F++ I F+V + + V G+ Sbjct: 511 VRMNNVMIEERAVIGKTKETVKFKTSGDLVF--IKFKVNEDWNKDIDTF---DTVSVVGN 565 Query: 571 LCVNYWRG------SKRCQLRVLDA 589 +N + ++ Q+ ++D Sbjct: 566 GTINEFYNFATKEMTRTPQIIIMDI 590 >gi|21465637|pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese Length = 424 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 120/422 (28%), Positives = 190/422 (45%), Gaps = 29/422 (6%) Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 ++I + GDYD DG A+++R L+ + + +IP R+ +GYG + + + + Sbjct: 32 QGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-AS 90 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 L +TVDCG T++ L+ G++VIV DHH P + D + Sbjct: 91 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPD---LKEKPT 147 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 AGV FL+L ++ L L DL A+ T+ DV PL G NRA V +GL Sbjct: 148 GAGVAFLLLWALHERLGL-------PPPLEYADLAAVGTIADVAPLWGWNRALVKEGLAR 200 Query: 271 ARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 GL+ L E V + + + I P INA R+GE+ RLL++DD+ E + Sbjct: 201 IPASSWVGLRLLAEAVGYTGKAVE--VAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQ 258 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 L +L LN R+ +E AML + + +A IV+ HPG++G++A+R+ Sbjct: 259 ALVGELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRI 312 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 E RP F ++ G G I + + E +L++ GGH AAG ++ Sbjct: 313 LEATLRPVFLVAQ-------GKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDE 365 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 F + +A + + + L + + L PYG GNP P+ Sbjct: 366 ALFPAFKARVEAYAARFPDPVREVALLDL---LPEPGLLPQVFRELALLEPYGEGNPEPL 422 Query: 511 FA 512 F Sbjct: 423 FL 424 >gi|255985658|gb|ACU46843.1| putative single-stranded DNA specific exonuclease [Lactococcus phage CB13] Length = 593 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 130/630 (20%), Positives = 250/630 (39%), Gaps = 99/630 (15%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILT 76 +W+ + +R + ++L R + ++ ++FL P + P + Sbjct: 3 KWIQKKAKIKADREDDLK---------TKILKARGIPLEDHQEFLFPDEKWENH-PFEIR 52 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM---MRFLSHCS-VNANMYIPDRIV 132 + ++A RI++ I + E I++ GD D DG + A+M ++ L + N + P R Sbjct: 53 NVERAVNRILEGIADKETIVVSGDPDADGITATAIMFNRLKALQDFNEFNLDYIYPQR-D 111 Query: 133 DGYGP------------------------NPSLMEKFIN---------EGAQLIITVDCG 159 G+G + + EK I+ + A ++I +D Sbjct: 112 TGHGLYGQLSVQDHWLNKAEKAKAEKDKESLAKWEKLIDLSRSNIEKTKVADILIVLDSS 171 Query: 160 STSYDALQYATNQG--IDVIVIDHHQVK-----SEEIPAYALVNPNRLDDLSGQGHLCAA 212 S + ++ A +D+I++DHH+ ++ L NP+ D S L A Sbjct: 172 SNDLEGVERARTLNPDLDIIILDHHEFDSKEIANKMDKEVILCNPHHHLDESVNKDLSGA 231 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVA 271 G+ + V I +L D DLVA+ V D++ ++ NR + +GL Sbjct: 232 GMAYKVAKGIDDVLDDDGFS------DQFRDLVAIGLVGDMMSVLNFENRYLISQGLQNV 285 Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 G + L + +++GY I P IN+ R+GE L ++ + D+ + E Sbjct: 286 NNVG--LSRILKGAKINTYRYNTKDIGYSIAPLINSSARMGEIELAFQIFMVDNDTDAEK 343 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 L +K+D LN+ R+ + A + D++ VIV++ + + G+ GL+A + Sbjct: 344 LRLKMDKLNKKRQETQK-----AVMQKYEDTQDMEDKIVIVIDSES-NKGMNGLVAQNIA 397 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 +K+ RP F ++ +DG GSGRS F+ + +S V+ GH A GL Sbjct: 398 QKYHRPCFVVTEGKDGVCRGSGRSYGSFNTNEFLSEL----DFVEAQGHGQAHGLNFPLD 453 Query: 452 NFGRLCDFFQKFAHNIVPALITTPVFKIDGVL-NASAV-----NIALIDMLESAGPYGAG 505 L ++ ++ + + F D L N ++ I+ + G Sbjct: 454 RLDDLKEYIEENMPDNLETEQ---TFYYDIELENVEEAFMALTDLTNINYIT-----GNN 505 Query: 506 NPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 P V N ++ V+ + F++ I F+V + + Sbjct: 506 FPEVVVRMDNVMIEERAVIGKTKETVKFKTSGDLVF--IKFKVNEDWNKDIDTF---DTV 560 Query: 566 HVTGHLCVNYWRG------SKRCQLRVLDA 589 V G+ +N + ++ Q+ ++D Sbjct: 561 SVVGNGTINEFYNFGTKEMTRTPQIIIMDI 590 >gi|294624922|ref|ZP_06703577.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600801|gb|EFF44883.1| single-stranded-DNA-specific exonuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 358 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 17/362 (4%) Query: 241 LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIERVNISS-PITAENLG 298 LLDLVA+ TV D+VPL NRA V GL R GL+ALI+ ++A ++G Sbjct: 2 LLDLVAVGTVADLVPLDTNNRALVSAGLRRLREGKGCIGLRALIDASGRDVARLSASDIG 61 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + +GP +NA GR+ + LG LL+S+D + +A L+ +N RR ++ M + AE V Sbjct: 62 FALGPRLNAAGRLEDMALGIELLLSEDWGQAREIAGTLEEINAERRAVQQLMTDDAEHAV 121 Query: 359 LTQCDDIQQ--ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG--IGSGR 414 D + WHPG++GL+A++LK++ RP A++ E G GS R Sbjct: 122 TKVVLDGDGALPIAACLFDAEWHPGVIGLVASKLKDRLHRPVIALAPAEPGSSQLRGSAR 181 Query: 415 SIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 SI G I +++ A G++ K GGHAMAAGL+++ FQ +V A + Sbjct: 182 SIPGLHIRDVLAAVDARHPGLIQKFGGHAMAAGLSIDHAALATFEQAFQAQVTAMVDASL 241 Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMT 532 DG L A ++ + L AGP+G G P P+F ++ RV+ HL++T Sbjct: 242 LHAQLHSDGELAAHELDHLHAEALRVAGPWGQGFPEPLFDGQ-FEVLQHRVLKERHLKLT 300 Query: 533 FESQDS-ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 E L AI F + L + + L + +RG QL V P Sbjct: 301 LRCPGRAEPLNAIHFNGWRGSDPARL-------VRLAYRLVADDYRGGTAVQLIVEHCEP 353 Query: 592 VE 593 Sbjct: 354 AT 355 >gi|255027933|ref|ZP_05299919.1| hypothetical protein LmonocytFSL_18891 [Listeria monocytogenes FSL J2-003] Length = 212 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 4/210 (1%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDP 72 S + W E +A + ++ I +A++L R ++ F +P DP Sbjct: 4 SKYLWNIEEAAED--KASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESY-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + + D A RI QAI +E+I+++GDYD DG S+A++M+ L H +A+ YIP+R Sbjct: 61 FLFAEMDLAVARIKQAIERNEQILVYGDYDADGVTSIAVLMKTLRHLGADADFYIPNRFT 120 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +GYGPN + + N+G LIITVD G + + + +A G+DVIV DHH+ + A Sbjct: 121 EGYGPNIAAFDMAKNQGTDLIITVDNGIAALEVMAHAKEIGLDVIVTDHHEPREIMPEAV 180 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 A+++P L GV + + + Sbjct: 181 AVIHPKHPKSAYPFDELAGVGVAYKLSHAL 210 >gi|289523399|ref|ZP_06440253.1| putative single-stranded DNA-specific exonuclease [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503091|gb|EFD24255.1| putative single-stranded DNA-specific exonuclease [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 550 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 127/571 (22%), Positives = 228/571 (39%), Gaps = 58/571 (10%) Query: 31 LAITQKHAIPDIVA---RV-LVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 + ++ A R+ +R + I A+ +L PS+ L+ + +A + Sbjct: 20 RELVDSLQCHELTALTLRIKYGDR-LDISKARAWLRPSLNSLLASLFLCEG-GEAVFPTL 77 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 +A+ K+ ++GDYDVDG AS L F + Y+P R+ DGYG NP++++ Sbjct: 78 RALPKGSKVALYGDYDVDGVASALLASEFAREKGWHVRYYLPHRLKDGYGLNPNVVKVIA 137 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 G L+I DCGS + + A + G+ V V DHH V + D+ + + Sbjct: 138 RMGFDLLIVTDCGSKNEKEIDLALDMGLKVAVFDHHLVDKICHRECIINPHIGGDEEARK 197 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 +L + LL LD+V+L+ V D +PL LNRA V + Sbjct: 198 LSAAGVLWCWLWQSGLVSQ----------DWLLDRLDIVSLSVVGDSMPLGLLNRALVRE 247 Query: 267 GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 GL PGL+ L ++++I PI L + P +N+ GRI + + L + S Sbjct: 248 GLKRLETTQRPGLRYLFDKLSIIYPIDENQLAMKLNPCLNSAGRISLAETALKAL--EHS 305 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +E A++L LN R+ + + QA + VV+ W G++ + Sbjct: 306 RESIKAALELVNLNYQRKKLSGELYNQATTGLR------DGRFKFVVDSAHWPLGLLSSV 359 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 A+RL +F RP ++ + G S R EG + +++ L GGH AAG Sbjct: 360 ASRLCYEFNRP-IVLAAQNGGNVRASLRVPEGLNAIEILEK--ISSHLKSWGGHKGAAGF 416 Query: 447 TVERVNFGRLCDFFQK---------FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLE 497 +V+ + + ++ A+ P ++ L + Sbjct: 417 SVDAKGWHEVKKKLEESLSKCCLLGSVSENEDAISFEPKMW----------DLHLWERFR 466 Query: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEF 556 P+G GN P F + ++ + +H ++ S + + + F Sbjct: 467 ELAPFGEGNEMPYFFISHQYDDVMKPLRGGSHYRLL-----SRSGEVLIFNFSEAE---- 517 Query: 557 LMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + +G+ V+ + G + ++ Sbjct: 518 --KYKGRIKGWLYRPFVDAFGGKLKLSMKAE 546 >gi|295104955|emb|CBL02499.1| Single-stranded DNA-specific exonuclease [Faecalibacterium prausnitzii SL3/3] Length = 580 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 114/597 (19%), Positives = 217/597 (36%), Gaps = 66/597 (11%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 ++ + D + ++ NR V L+ S + P L + + A R + + I+N I Sbjct: 10 RNDLSDPIGTIMENRGVKDYKIYMNLDDSC---LNSPWELDNMEDAVRLLNKHIWNKSII 66 Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 I D DVDG S ++M ++L + + +G + E + L+I Sbjct: 67 SILVDCDVDGFTSASMMFQYLKTIGYFGKINVLHHSGKEHGLSK---EIEVPPETTLLII 123 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 D GS + + + GID++++DHH E A + N N L AGVV Sbjct: 124 PDAGSNDVEQCKELRDNGIDILILDHHICDRENPYAVIVNNQNG---TYPNKELSGAGVV 180 Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQ 274 + L + ++ LDLVA+ + DV+ + + KGL R Sbjct: 181 YKFLQAV-------DEYNWTDVADRYLDLVAVGNIGDVMDMHSHETKRLCTKGL---ARI 230 Query: 275 GNPGLKALIER--VNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE---- 328 NP + AL+E NI T ++ + I P +NA R+G S R+ + +E Sbjct: 231 VNPMICALVEANSFNIKGDPTINDVQFYIVPMMNALIRVGSSEQKKRMFRAMVGEEQTFQ 290 Query: 329 -----------------LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + +A + + ++ AE + ++ V+ Sbjct: 291 YTPTRGKNAGVTIDETLAQHVARECSSCK--YQQNKTKDKAVAELQNWISKYGADRSKVL 348 Query: 372 VVEGDRW-HPGIVGLLAARLKEKFGRPSFAISFE--------EDGKGIGSGRSIEGFDIG 422 + G++A +L E +G+P + GS R+ +G I Sbjct: 349 FCNSTGILDSNLTGVVAIKLAEMYGKPCVLLREMACPEEPDENQEYFGGSMRNPDGSPIE 408 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + F + G GH AAG+ +++ N + ++ + + +D Sbjct: 409 SLKEFLMSTGDFESVLGHDNAAGVKIKKKNVPKAIADCN----ELLKDVTMSKAIVVDFD 464 Query: 483 LNASAVNIALIDMLESAG-PYGAGNPNPVFAFPNHKLQS--IRVVNLAHLQMTFESQDSE 539 + S + +AL + + G P F N L + + ++ + Sbjct: 465 FDYSKLTVALPKTMYEMHKIWAQGISEPYFYIKNIPLIHSGCAPMGKNGNMWKYSDEE-K 523 Query: 540 TLQAIAF----RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + F R+ G +F K ++ L +N + Q +++D + Sbjct: 524 GIDFVCFADNGRMIGWINNDFYGDQEEKYINAVCRLSLNQYGNKVTPQAQIVDFEVI 580 >gi|307069647|ref|YP_003878124.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Zinderia insecticola CARI] gi|306482907|gb|ADM89778.1| single-stranded-DNA-specific exonuclease RecJ [Candidatus Zinderia insecticola CARI] Length = 561 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 131/560 (23%), Positives = 247/560 (44%), Gaps = 26/560 (4%) Query: 42 IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 I + + +R VS ++ + + L+ +L + +KA + I++ I+N +KI I DY Sbjct: 24 IFSNIYSSRKVSSISKINY---NFKNLIKTKNLL-NIEKATKVIIKYIFNKKKICIIPDY 79 Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 D DG S L ++ L N +IP+R GYG + ++ K + + +LIITVD G + Sbjct: 80 DCDGITSCVLAIKILKKLGANVYYFIPNRFKYGYGLSIKII-KKLKKNTKLIITVDNGIS 138 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 S+ ++YA + I +I+ DHH + +VNPN + S +L GV F +L+ Sbjct: 139 SFKGIKYANKKNIKIIITDHHLPNKKIPNNCIIVNPNFKKNNSKIKNLSGVGVTFYLLLH 198 Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281 + L++ + + LD+VA+ T+ D+V L NR + G+ + LK Sbjct: 199 LNNKLKKKFLNFKKIKIKNFLDIVAIGTLADIVKLDYNNRILIYNGIR--NIKNLGILKL 256 Query: 282 LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 L I ++ + I P IN+ GRI + L + L++++ ++L + + +N Sbjct: 257 LKFLNKNKKNINCNDIIFYISPLINSTGRIKDPYLSIKFLLTNNKKKLNNIIKSIIKINN 316 Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP-SFA 400 R+ E ++L +I + +++ ++H GI+G++++++KEKF P Sbjct: 317 TRKKKEKSILFI--INNYINKININRYYSLIIYNKKFHEGIIGIISSKIKEKFNLPTIIF 374 Query: 401 ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI--LVKGGGHAMAAGLTVERVNFGRLCD 458 ++ GSGRSI+ +I ++ + + K GGH+MA GLT+ + Sbjct: 375 TKTKKKKFIKGSGRSIKNINIKNILEKINKSNSKIIKKFGGHSMAIGLTIFKNKLNLFKK 434 Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518 F + I + KID LN N I +L +G P+F + Sbjct: 435 KFNNYIKKKNNKYINKKILKIDCYLNVKYFNKKFIILLNK-QIWGNNFSEPIFY-NFFNI 492 Query: 519 QSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT-GHLCVNYWR 577 +++N H + + ++ +Y + + + +N + Sbjct: 493 IKQKIINKKHNFLLLKLKN---------NIYNSIWFNNNKIINFNNKILVFFKIYLNNFN 543 Query: 578 GSKRCQLRVLDASPVEGHHF 597 QL + + +F Sbjct: 544 NK--IQLILQYIKEINYENF 561 >gi|76799804|ref|ZP_00781871.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus agalactiae 18RS21] gi|76584843|gb|EAO61534.1| single-stranded DNA-specific exonuclease, 5''-3'' [Streptococcus agalactiae 18RS21] Length = 452 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 16/302 (5%) Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 I P +NA GR+ + N LL D +E + +A +D N+ R+ + + +QA + Sbjct: 1 IAPQLNALGRLDDPNPAIELLTGFDDEESQAIAQMIDQKNEERKEIVQTIFDQAMQML-- 58 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Q V V+ + WHPG++G++A R+ E+ G+P ++ EDG GS RS+E D Sbjct: 59 ----DQTKPVQVLAKENWHPGVLGIVAGRILERTGQPVIVLNI-EDGIAKGSARSVEALD 113 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 I +F + + GGH+ AAG+T+E G L + + ID Sbjct: 114 I--FQAFDQHRELFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTID 171 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDS 538 L +++ + E P+G N PVF + K+ RV+ HL++ E QD Sbjct: 172 SELRFDELSLDTVRDFEKLAPFGMDNKKPVFLLKDFKVSQARVMGQNGAHLKLKLE-QDG 230 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 + L +AF + G+ L EF + + + + L VN W G+ QL + DA F Sbjct: 231 QALDLVAFNM-GSQLQEF---QQAQHLELAVTLSVNQWNGATTLQLMLEDARVDGIQLFD 286 Query: 599 KK 600 + Sbjct: 287 IR 288 >gi|319645718|ref|ZP_07999948.1| YorK protein [Bacillus sp. BT1B_CT2] gi|317391468|gb|EFV72265.1| YorK protein [Bacillus sp. BT1B_CT2] Length = 572 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 113/579 (19%), Positives = 222/579 (38%), Gaps = 50/579 (8%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + +L NR + + + FL+ S + L + D+AA +++ + +I Sbjct: 10 DFCFSP-LKTILKNRGI--EDIEGFLSLS-EDAVNHYSNLINIDEAAECLIKHLRKKARI 65 Query: 96 MIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 I D DVDG S ++++ ++ N R+ + G ++ + I EG L+ Sbjct: 66 FIQVDSDVDGVTSSSIIINYIKRVFPEANIEW----RMHE--GKQHGIILETIPEGVDLV 119 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 I D GS ++ +GIDVIVIDHH+ E A+V N+L L AG Sbjct: 120 IIPDAGSNQFEEHLVLRQKGIDVIVIDHHECDKESQN--AIVVNNQLSPKYKNKALTGAG 177 Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVAR 272 + + + + L ++ +DLV++ + D R Y+ +GL R Sbjct: 178 MAYKLCQALDDKLGKNEA-------KRFIDLVSVGNIADSADSREPETRYYMNQGLKKVR 230 Query: 273 RQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS--------- 323 + + + +N + I P INA RIG + +++ S Sbjct: 231 N-PLIKELFIKQAYSTKGKKNIQNTQFYINPLINAAIRIGSQDEKDQMMRSLLESNEEIY 289 Query: 324 ---------DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + A L + Q ++ M + + + E ++ + ++ +IV Sbjct: 290 YKKRGKDEGELVSIHWDTARVLGNIKQRQKKMVDSAVLEIEKRIEEKGL-LKNKILIVYI 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL 434 + + GL+A +L ++ RP ED GSGR + + E G Sbjct: 349 EGILNKNLTGLVANQLAAEYKRPVLLARELEDRTLGGSGRGYDKGAVKNFKQLLEETGKF 408 Query: 435 VKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALID 494 GHA A G ++ N ++ D +IV I +++D + A + I Sbjct: 409 EFVEGHAEAFGFSITPENLIQVNDILNHKLKDIV---INQNEYEVDFEIAADNLTERFIK 465 Query: 495 MLESAGP-YGAGNPNPVFAFPNHKLQSIRV--VNLAHLQMTFESQDSETLQAIAFRVYGT 551 ++ S +G P+ A + ++ + + + T + + ++ + F+ Sbjct: 466 LINSYQDYWGYKVEEPLLAITDIEINKEDISHIGKK-TKNTVKFKVGG-IEYMKFKSDEE 523 Query: 552 PLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + + V G VN ++G + Q+ + + Sbjct: 524 FYESLINRGDRLVLTVIGRAKVNEYKGKETPQIEIEEME 562 >gi|302668999|ref|YP_003832824.1| ssDNA exonuclease RecJ2 [Butyrivibrio proteoclasticus B316] gi|302397339|gb|ADL36242.1| ssDNA exonuclease RecJ2 [Butyrivibrio proteoclasticus B316] Length = 543 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 134/537 (24%), Positives = 229/537 (42%), Gaps = 58/537 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +KAA I + I I +F DYDVDG + +M++ L +Y P R VDGYG Sbjct: 38 LEKAAEMIKRHIAAQLPIAVFTDYDVDGLGAALIMIQLLQALGAQYYVYAPRRSVDGYGI 97 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE-----IPAY 192 + + K ++ L+ITVD G + + + A G +V+++DHH + A Sbjct: 98 TNNFVSK-LSGYRGLLITVDNGIAAIEQVNRAKALGWEVLIMDHHHALENDGIPEIPRAD 156 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 +++P H C AG+ F + + + + L A++TV D Sbjct: 157 LIIDPEVFGTGCDFTHYCGAGLAFKLAQF---------MLDDQYLIDKLNTFAAISTVAD 207 Query: 253 VVPLIGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 VVPLI NR V +GL + R G GL+ L+E + I TA++LG+ IGP +NA R+ Sbjct: 208 VVPLIEDNRQIVKRGLELMNRGVGTVGLQKLLEYLQIRGFATAKDLGFSIGPMMNAATRM 267 Query: 312 GES-------NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 + L+ +D +M+L +N+ R+ + +A LE + +L Sbjct: 268 EAMYEGWNGSDFVINALLCEDEMLASQYSMQLSEINKQRKEITAAALETVKCDILD---- 323 Query: 365 IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKM 424 + G+ G++A R+ E+ +P+F EE+G GS RS + Sbjct: 324 -----SVNFIKVDAPAGLCGIIAPRVMEQNPKPTFVF-MEENGVCTGSARSDDETQNNVK 377 Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 +L+K GGH AAG + + N + ++ +V + D LN Sbjct: 378 EMLETCRDLLIKYGGHPGAAGFSFKIENMDEIHKRLSEYP--VVSNALKQ---VYDLELN 432 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFP---NHKLQSIRV------VNLA--HLQMTF 533 + ++ + L+ P+G G P+F N + Q+ + + HL++ Sbjct: 433 KEDI-VSTLCELDRIEPFGKGLEAPIFRVACRFNDRDQNGNITEYWHGMGKDGSHLRLDL 491 Query: 534 ESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 Q L+A+AF + +F K++++ G N + G + Q R Sbjct: 492 TPQ----LKAVAFNMK----PQFDEMGHPKQLYLIGRPGWNIYDGKRIAQFRCEAIE 540 >gi|242310450|ref|ZP_04809605.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter pullorum MIT 98-5489] gi|239522848|gb|EEQ62714.1| single-stranded-DNA-specific exonuclease recJ [Helicobacter pullorum MIT 98-5489] Length = 441 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 125/454 (27%), Positives = 213/454 (46%), Gaps = 29/454 (6%) Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++ IP R DGYG + +++++ ++IITVD G ++ +A + +GI++I+ DHH Sbjct: 2 ISIVIPSRFDDGYGLSSAMIDRL---DCEMIITVDNGISAIEAAEVCKQRGIELIITDHH 58 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 E +P + NP + +C A V + + I + + + + L Sbjct: 59 -TPQENLPDALICNPKLSP-HFPESEICGACVAWYLCAAIKQEMGIE------VQMAEFL 110 Query: 243 DLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIG 302 DL+ALA + DV+PL G+NR + KGL V + L L E P+ ++ LGY Sbjct: 111 DLLALAIISDVMPLRGMNRVLLKKGLEVLAQSKRAALVILKEHFK-RYPLNSQLLGYYFV 169 Query: 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 P +N GR+ E+ + LI D + + KL LNQ R+ +++ +A+ TQ Sbjct: 170 PLLNCAGRMEEAKIAYEFLIEKDYCKALEIFKKLQKLNQKRKNLQNKTFLEAKEYFETQ- 228 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIG 422 + ++ ++V ++W+ G+VG++AA+L E++ RPS ++ +E+ GS RS DI Sbjct: 229 EKFEELPFVLVCNEQWNEGVVGIVAAKLCEEYARPSIVLTHKEE-YLKGSMRS---LDID 284 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 M +G L GGH AAGL++ + DF +P I G Sbjct: 285 CMKILEQCQGYLEAFGGHFGAAGLSL---QKEKFLDFRDYLMQLKLPDKQKIIQSNILGS 341 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ 542 L VN+ + +L+ PYG N P F K++++++ H QM E Q+ + Sbjct: 342 LPLKEVNLEIFRILQEFEPYGEQNSIPQFVTQ-AKIRAVQIFGTNHSQMVLE-QEGVIRK 399 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 A+ F E L + M L + + Sbjct: 400 ALVFF-------ENLKAYENQEMGFAYSLQWDKF 426 >gi|9630257|ref|NP_046684.1| putative ss-DNA-specific endonuclease [Bacillus phage SPBc2] gi|16079094|ref|NP_389917.1| single-strand DNA-specific exonuclease; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|221309941|ref|ZP_03591788.1| hypothetical protein Bsubs1_11241 [Bacillus subtilis subsp. subtilis str. 168] gi|221314263|ref|ZP_03596068.1| hypothetical protein BsubsN3_11162 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319185|ref|ZP_03600479.1| hypothetical protein BsubsJ_11088 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323461|ref|ZP_03604755.1| hypothetical protein BsubsS_11217 [Bacillus subtilis subsp. subtilis str. SMY] gi|75077815|sp|O64145|YORK_BPSPC RecName: Full=Putative single-strand DNA-specific exonuclease yorK gi|81342019|sp|O31903|YORK_BACSU RecName: Full=Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK gi|2634428|emb|CAB13927.1| putative single-strand DNA-specific exonuclease; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025610|gb|AAC13105.1| putative ss-DNA-specific endonuclease [Bacillus phage SPbeta] Length = 576 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 111/585 (18%), Positives = 225/585 (38%), Gaps = 55/585 (9%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + +A +L NR + + K F+N ++ L + DKAA +++ + N K+ Sbjct: 10 DYNFDP-LATILKNRGI--EDPKLFVNVDQSSVIHY-SKLNNIDKAADCLIRHLNNKNKL 65 Query: 96 MIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 + D DVDG S ++++ ++ N + I D G + I + L+ Sbjct: 66 FVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQD------GKEHGIFIDTIPDDVDLV 119 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 I D GS+ ++ + +G ++IVIDHH+ + A+V N+L L AG Sbjct: 120 IIPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEH--AIVVNNQLSPNYSNKTLTGAG 177 Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVAR 272 + + I L ++ LDLV++ + D R ++ +GL Sbjct: 178 MAYKFCQAIDEKLNKNEA-------EQFLDLVSIGNIADSADSRNLETRYFMNEGLKKI- 229 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLI-------- 322 +P LK L ++ + +N + I P INA R+G S +++ Sbjct: 230 --KHPLLKKLFKKQEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEK 287 Query: 323 -------SDDSQELEMLAMKLDVLNQNR-RLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +++ + + + +L + + E K + + V++V Sbjct: 288 VPYKKRGQSETELVSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVY 347 Query: 375 GDRW-HPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFD--IGKMVSFAVE 430 + + GL+A +L E++ +P + E GK I SG I ++ Sbjct: 348 IEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELID 407 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+ GH AAG ++R N + + +I +D + A + Sbjct: 408 TGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDINIEEDIQN---VDFEIPAKRLRK 464 Query: 491 ALIDMLESAGP-YGAGNPNPVFAFPNHKLQSIRV--VNLAHLQMTFESQDSETLQAIAFR 547 I L+ +G P+ A + +++ ++ + + T + + + ++ I F+ Sbjct: 465 EFILQLDGYKDYWGYKVEEPLIAITDLEIEVEQIEHLGKK-NKTTVKFKHGD-IEYIRFK 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + ++V G N ++G K Q+ + + V Sbjct: 523 SDENYFNQLTASNGTLVINVIGKAKANEYKGKKTPQIEIYELEVV 567 >gi|158834139|gb|ABW81874.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834141|gb|ABW81875.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834149|gb|ABW81879.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 193 bits (490), Expect = 7e-47, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A+ +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280 >gi|20808502|ref|NP_623673.1| single-stranded DNA-specific exonuclease [Thermoanaerobacter tengcongensis MB4] gi|20517123|gb|AAM25277.1| Single-stranded DNA-specific exonuclease [Thermoanaerobacter tengcongensis MB4] Length = 491 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 127/439 (28%), Positives = 204/439 (46%), Gaps = 32/439 (7%) Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 IV+ I+ S+ I IFGDYDVDG +S ++ L + +++P+R +GYG P +++ Sbjct: 29 IVKTIFESKSIAIFGDYDVDGISSSLILKNALDVLGIQNKIFLPER-EEGYGIKPEHVQQ 87 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 EG +ITVD G T+++A + A GI +I+ DHH+ + AY + NP D Sbjct: 88 IKAEGFDAVITVDNGITAFEAAKAAREAGIKLIITDHHEPLAHLPDAYKIFNPKLYKDKY 147 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 AGV +L+ +LRQ N + L LATV DVVPL G N Sbjct: 148 Q--DYAGAGVAYLIA---RELLRQRNFSVTPAMI----QLAGLATVADVVPLDGNNWYIA 198 Query: 265 VKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 KGL + R+Q G+K ++ + +T ++G++I P INA GR+ +G LL+ Sbjct: 199 RKGLELMRKQPIKGIKEILRTAGRNHENLTGFDIGWIIAPRINATGRLKSPKMGLELLLY 258 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 A +++ LN+ R + + L + E + ++ GI Sbjct: 259 GT------NAEEVEQLNRKRLELVNQYLSRIE---------DSENKFLIYAFKNCPRGIT 303 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 GL+A R EKF +P S + GK + S R+ FD+ + + E + GGH A Sbjct: 304 GLIAGRAAEKFQKPVMVSSIDSSGKAVSSARTYGDFDLMEAFKYVSEHVDI-TFGGHKSA 362 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 AG++ + R+ + K+ P + +DGVL ++ + +S P+G Sbjct: 363 AGVSYSIRDLKRIQNLLNKYTEENPPKE---EIRDLDGVLT-KVPDLEEVMAFDSFEPFG 418 Query: 504 AGNPNPVFAFPNHKLQSIR 522 NP P F + +R Sbjct: 419 YKNPEPAFLLEG-TVTDVR 436 >gi|158834121|gb|ABW81865.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 193 bits (489), Expect = 9e-47, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 146/274 (53%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A+ +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTGR 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCSFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E + +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSAHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ ++G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSIGVSLLLTQDLSEARELAKD 280 >gi|158834129|gb|ABW81869.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834131|gb|ABW81870.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834133|gb|ABW81871.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834135|gb|ABW81872.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A+ +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRARLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280 >gi|158834113|gb|ABW81861.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834115|gb|ABW81862.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834117|gb|ABW81863.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834119|gb|ABW81864.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834123|gb|ABW81866.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 95/274 (34%), Positives = 143/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A+ +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTGR 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E +T +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTVADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280 >gi|158834137|gb|ABW81873.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A+ +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRVHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280 >gi|158834153|gb|ABW81881.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 144/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEDAIQILKEAFSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R + PG+ AL+E +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRARKSRPGIVALLEVASRSEHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELAKD 280 >gi|328912209|gb|AEB63805.1| Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK [Bacillus amyloliquefaciens LL3] Length = 576 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 112/585 (19%), Positives = 230/585 (39%), Gaps = 55/585 (9%) Query: 36 KHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKI 95 + ++ +L+NR + + K F++ + ++ L + DKA+ +++ + N KI Sbjct: 10 DYNFNP-LSTILINRGI--ENPKSFIDVNQSSVIH-FSKLDNIDKASDCLIKHLENKNKI 65 Query: 96 MIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 + D DVDG S ++++ ++ N + I D G + I + L+ Sbjct: 66 FVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQD------GKEHGIFIDTIPDDVDLV 119 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 I D GS+ ++ + +G ++IVIDHH+ + E A+V N+L L AG Sbjct: 120 IIPDAGSSQFEEHEALNKRGTEIIVIDHHECERESEH--AIVVNNQLSPNYSNKTLTGAG 177 Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVKGLMVAR 272 + + + L ++ LDLV++ + D R ++ +GL Sbjct: 178 MAYKFCQAVDEKLNKNEA-------EQFLDLVSIGNIADSADSRNLETRYFMNEGLKKI- 229 Query: 273 RQGNPGLKALIERVNISSP--ITAENLGYMIGPSINAGGRIGESNLGSRLLI-----SDD 325 +P LK L ++ + S+ +N + I P INA R+G S +++ + Sbjct: 230 --KHPLLKKLFKKQDFSTRGDKNIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEK 287 Query: 326 SQELEMLAMKLDVLNQN----R-------RLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 + + ++++ + R + A E K + + V+++ Sbjct: 288 VPYKKRGQSETELVSIHDDTVRILGNLKAKQKRIADAAGVEIKNRIEEKSLTANKVLIIY 347 Query: 375 GDRW-HPGIVGLLAARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFD--IGKMVSFAVE 430 + + GL+A +L E++ +P + E GK I SG I ++ Sbjct: 348 IEGILDKSLTGLVANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKVLID 407 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G+ GH AAG ++R N + + +I +D + A+ + Sbjct: 408 TGLFEFVEGHPNAAGFAIKRQNLILVNKVLNEKFKDIDIEEYVQN---VDFEIPANQLRK 464 Query: 491 ALIDMLESAGP-YGAGNPNPVFAFPNHK--LQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 + L S +G P+ A + + I + + T + + + ++ I F+ Sbjct: 465 EFLIKLYSYKDYWGYKVEEPLVAITELEVDVDQIEHIGKK-NKTTVKFKHGD-IEYIRFK 522 Query: 548 VYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + ++V G VN ++G + Q+ + D V Sbjct: 523 SDTEYFEKLTQSNGTLILNVVGKARVNEYKGRQTPQIEIYDLEVV 567 >gi|291529778|emb|CBK95364.1| Single-stranded DNA-specific exonuclease [Eubacterium rectale M104/1] Length = 594 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 116/567 (20%), Positives = 206/567 (36%), Gaps = 57/567 (10%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDR 130 + + + A+ ++ DYD DG + S + + +P R Sbjct: 37 YHINNMQEVMALFTDAVIKRYMMIFHTDYDGDGINCANIARNLASVLGITDLVKVVVPRR 96 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGYG +E + G +L+I D G + + ++ A G+ VI++DHH+ + Sbjct: 97 FSDGYGVQVRHVEAYAEWGCKLLILADNGIAAIEPVKRAKELGMKVIILDHHEKFVNDQK 156 Query: 191 AYALVNPNRLDDLS----GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 L + + L D C AG++++ I + A Sbjct: 157 EVVLPDADVLCDPHVTGADFVDYCGAGLMYIFANSIVSTCPWLSDGAKEKFHAVTSVYAA 216 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVA-RRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 + TV DVVPL G NR V G+ A + + G+ L++ N+ ITA + + + P Sbjct: 217 IGTVADVVPLTGENRRIVKAGIKNALAGRASTGMMELLKDANMLDRITAPQMAFFLCPMF 276 Query: 306 NAGGRIGESNLGS----RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 NA R+ + + + +E + N+ R+ + +A + Sbjct: 277 NAYERLDDGGSAEVSDATSYMGVHDESIENDCQIIKNKNEERKKLAEEAFARAVDYINAN 336 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFD 420 ++Q IV + GI GL A ++ EK+ RPS +S +D GSGRS + Sbjct: 337 --NLQNERFIVFVDEDGSAGINGLTAGKITEKYRRPSIVVSPTIDDNILKGSGRSRYWAN 394 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 + K+ + K GGH A G+T+ R PA + + D Sbjct: 395 LKKI--LDQSNEFIEKYGGHPGACGITLTRDKINDFIKAVNDLTPEA-PAEEQSDIILYD 451 Query: 481 GVLNASAVNI-ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV-----------VN--L 526 VN+ + + E P+G GNP VF + + + + Sbjct: 452 KECRV--VNLRKMFEETEKYQPFGEGNPEIVFRIDDIDIVGKKRYRAEGVDYYQFMGANK 509 Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW---------R 577 H+++ + Q I F E+ ++ V G L N + + Sbjct: 510 QHVKLF-----ANGFQLIWFGGAE----EYKKMGCPLKVSVLGTLNENIYVPDREAIPRK 560 Query: 578 GSKRCQLRVLDASPV------EGHHFA 598 + Q+++ D P E + Sbjct: 561 EYRTLQVQITDLKPADASDKSEWQNIP 587 >gi|158834151|gb|ABW81880.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 145/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A+ +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEAAIQILKEALSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTGR 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLILGLRAHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E + +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSAHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELARD 280 >gi|158834111|gb|ABW81860.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834125|gb|ABW81867.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834127|gb|ABW81868.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834143|gb|ABW81876.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834145|gb|ABW81877.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834147|gb|ABW81878.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] gi|158834155|gb|ABW81882.1| 5'-3' exonuclease [Candidatus Hamiltonella defensa] Length = 280 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 143/274 (52%), Gaps = 7/274 (2%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYI 127 + D L + A + + +A +++MI GD+DVDGA S AL M L N + I Sbjct: 7 LCDWQALAGIEDAIQILKEAFSLQKRMMIVGDFDVDGATSTALAMMALEAMGAQNVHFLI 66 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P+R +GYG P ++E+ GA LIITVD G +S++ + A ++G+ V++ DHH Sbjct: 67 PNRFEEGYGLTPKIVEQVSLRGADLIITVDNGISSHEGVDLAHHKGMQVLITDHHLPTER 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV----PLNFDLLSLLD 243 A A++NPN+L+ L GV F +++ + LR++ +L LD Sbjct: 127 LPNADAIINPNQLNCPFPSKSLAGVGVTFYLMLGLRAHLRKEGWFHKKNIQEPNLAEFLD 186 Query: 244 LVALATVCDVVPLIGLNRAYVVKGLMVARRQG-NPGLKALIER-VNISSPITAENLGYMI 301 LVAL TV DVVPL NR V +GL R PG+ AL+E +TA +LG+ + Sbjct: 187 LVALGTVADVVPLDTNNRILVHQGLNRIRAGKSRPGIVALLEVASRSEHRLTAADLGFAL 246 Query: 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMK 335 P +NA GR+ + G LL++ D E LA Sbjct: 247 APRLNAAGRLDNMSTGVSLLLTQDLSEARELARD 280 >gi|325475092|gb|EGC78278.1| single-stranded-DNA-specific exonuclease RecJ [Treponema denticola F0402] Length = 705 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 5/207 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W + G I +K+ + + +LV R + +L +R L P + Sbjct: 3 WQ--KKEIGPELVNEIKRKYGCDPLTSAILVRRGIIEGKDILFYLEDDMRYLH-SPFLFK 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + + A RI+ A EK++IFGD DVDG S L+ L ++ + IP + YG Sbjct: 60 NMEDAVDRILDAKEEGEKVLIFGDRDVDGITSTTLLYEALKDMGLDVSWRIPT-GDESYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + +EK LIITVDCG +++ ++ A + GIDVIV+DHH + A ++N Sbjct: 119 LSVEAVEKHAANDGTLIITVDCGISNFKEIEKANSLGIDVIVVDHHTPQENLPEAAVIIN 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223 D +L + ++ + Sbjct: 179 CKMPDSGYPHENLSGCATAWKLITALR 205 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 158/354 (44%), Gaps = 12/354 (3%) Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYM 300 + LVAL+T+ D++ L G NR V +GL ++ GL L+ + +PI E + + Sbjct: 358 IQLVALSTLADLMELTGENRIIVKQGLKEINKKPRLGLVDLMAMQKLLGAPIGTEEIAWN 417 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 I P +NA GR+G L ++ DS E A ++ +N++RR + S E A + Sbjct: 418 ISPLVNASGRMGRPETAIELFLAQDSGERTAKAQEIFQMNEDRRALGSKAWEIALPLAIE 477 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + + V+ V + +H GI G+LA +L E F P+ AI DG + S RS GF Sbjct: 478 SLKEYNEKLVVAVSAE-FHRGITGILAGKLAEYFKLPALAICLMPDGSAVASIRSARGFR 536 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479 + + + + GGH AAG +++ + + ++F+ ++ + I Sbjct: 537 LLDFLE--PYSELFLDYGGHDFAAGFGIKQEKLTKFLESLKQFSGSMEFENDADSETLTI 594 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536 D L + ++++++ PYG +P F K+ + ++ A HL+ E Sbjct: 595 DAELPHDYLKPEILNLVDKFEPYGCNSPALTFMTKRVKILNANIIGKAEPLHLRFNLEC- 653 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 A+ ++ EF G + ++ NY+ G+ ++ + D Sbjct: 654 GKYKWNALYWKAAEKLGTEF---KVGDYADIVFNVSKNYFNGTVTPKMVIKDLK 704 >gi|42527693|ref|NP_972791.1| single-stranded-DNA-specific exonuclease RecJ [Treponema denticola ATCC 35405] gi|41818521|gb|AAS12710.1| single-stranded-DNA-specific exonuclease RecJ [Treponema denticola ATCC 35405] Length = 710 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 5/207 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W + G I +K+ + + +LV R + +L +R L P + Sbjct: 3 WQ--KKEIGPELVNEIKRKYGCDPLTSAILVRRGIIEGKDILFYLEDDMRYLH-SPFLFK 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + + A RI+ A EK++IFGD DVDG S L+ L ++ + IP + YG Sbjct: 60 NMEDAVDRILDAKEEGEKVLIFGDRDVDGITSTTLLYEALKDMGLDVSWRIPT-GDESYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + +EK LIITVDCG +++ ++ A + GIDVIV+DHH + A ++N Sbjct: 119 LSMEAVEKHAANDGTLIITVDCGISNFKEIEKANSLGIDVIVVDHHTPQENLPEAAVIIN 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223 D +L + ++ + Sbjct: 179 CKMPDSGYPHENLSGCATAWKLITALR 205 Score = 166 bits (420), Expect = 9e-39, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 12/357 (3%) Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYM 300 + LVAL+T+ D++ L G NR V +GL ++ GL L+ + +PI E + + Sbjct: 358 IQLVALSTLADLMELTGENRIIVKQGLKEINKKPRLGLVDLMAMQKLLGAPIGTEEIAWN 417 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 I P +NA GR+G L ++ DS E A ++ +N++RR + S E A + Sbjct: 418 ISPLVNASGRMGRPETAIELFLAQDSGERTAKAQEIFQMNEDRRALGSKAWEIALPLAIE 477 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + + V+ V + +H GI G+LA +L E F P+ AI DG + S RS GF Sbjct: 478 SLKEYNEKLVVAVSAE-FHRGITGILAGKLAEYFKLPALAICLMPDGSAVASIRSARGFR 536 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479 + + + + GGH AAG +E+ + + ++F+ ++ + I Sbjct: 537 LLDFLE--PYSELFLDYGGHDFAAGFGIEQEKLTKFLESLKQFSGSMEFENDADSETLTI 594 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536 D L + ++ +++ PYG +P F K+ + ++ A HL+ E Sbjct: 595 DAELPHDYLKPEILHLVDKFEPYGCNSPALTFMTKRVKILNANIIGKAEPLHLRFNLEC- 653 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 A+ ++ EF G + ++ NY+ G+ ++ + D ++ Sbjct: 654 GKYKWNALYWKAAEKLGTEF---KVGDYADIVFNVSKNYFNGTVTPKMVIKDLKKID 707 >gi|213583109|ref|ZP_03364935.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 271 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 7/263 (2%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIV 132 L+ D A + A +I++ GD+D DGA S AL + + + + +P+R Sbjct: 9 QLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFE 68 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 DGYG +P ++++ GAQLI+TVD G +S+ + +A I VIV DHH A Sbjct: 69 DGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAE 128 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALA 248 A++NPN D L GV F +++ + LR +L LLDLVAL Sbjct: 129 AIINPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALG 188 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSIN 306 TV DVVPL NR +GL R + PG+KAL+E N + A +LG+ +GP +N Sbjct: 189 TVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLN 248 Query: 307 AGGRIGESNLGSRLLISDDSQEL 329 A GR+ + ++G LL+ D+ E Sbjct: 249 AAGRLDDMSVGVALLLCDNLGEA 271 >gi|313618803|gb|EFR90697.1| single-stranded-DNA-specific exonuclease RecJ [Listeria innocua FSL S4-378] Length = 518 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 14/311 (4%) Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 E +G+ + P +NA GR+G ++ + LL+++D +E LA ++D N+ R+ + + + Sbjct: 7 EETIGFGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQVVVDVTKL 66 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGS 412 A A + + ++IVV G+ W+ GI+G++A++L + RP+ + + G GS Sbjct: 67 AMAAIEAK---ESLGNIIVVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDPVTGIAKGS 123 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 GRS+E F + + ++ GGH MAAGLT+ N L + Q+ A + Sbjct: 124 GRSVEAFHLYQA--LDKHRSLMTAFGGHPMAAGLTLPAENLAELDNKLQEEAS-HLSDED 180 Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQ 530 P KI+ +N + ++++ I LE P+G NP P+F L+ + + HL+ Sbjct: 181 FRPALKIEEKINLADISVSFIAQLEKLAPFGMDNPKPIFLLEEMNLKGTKRIGADKTHLK 240 Query: 531 MTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++DS+ TL AI F V S + V G L +N W K+ QLR++D Sbjct: 241 TMLANEDSDVTLDAIGFGVGDL----VEKISPHAAVDVVGELSINEWNNIKKPQLRMMDI 296 Query: 590 SPVEGHHFAKK 600 F + Sbjct: 297 HIPHWQLFDVR 307 >gi|269941584|emb|CBI49989.1| phage putative phosphoesterase [Staphylococcus aureus subsp. aureus TW20] Length = 588 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 105/592 (17%), Positives = 231/592 (39%), Gaps = 51/592 (8%) Query: 32 AITQKH--AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89 + ++ + + +L NR + + + +++P+ L PD L D ++ + + I Sbjct: 4 KLKGEYTPNLDPLE-YILSNRGIKEEDYEKYISPT-EELQPDWKKLEDIEEGVKSLKSKI 61 Query: 90 YN-SEKIMIFGDYDVDGAASVALMMRFLS---HCSVNANMYIPDRIVDGYGPNPSLMEKF 145 + + KI I D D DG AS ++M +FL+ + IP + +G N + + Sbjct: 62 DDDNAKIGILIDADQDGLASGSIMYKFLTKQLQFDKERIIVIPP-LNKSHGINIERVLEH 120 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 ++IT D S+ ++ + N+GI+ +VIDHH + ++N D+ Sbjct: 121 GMTSGDILITPDSASSDFEQHEELYNKGINTLVIDHHLAPKNKDSKAIIINNQLSDE-FE 179 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL--NRAY 263 L + + +L V +L D V +L DL A+ V D Sbjct: 180 NKALTGSAMTYLFCVAYCELLGTDLTV-------NLKDLAAIGLVADRANFAHDLGAYYM 232 Query: 264 VVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESNLGSRLL 321 + GL + + N+ + A+++G+ + P+INA R+G + ++++ Sbjct: 233 MRDGLRKENIDSLMLKMIINKSSNLEQGVDLNAKDIGFNVAPTINAVFRMGTQDELTQVI 292 Query: 322 ISDDSQEL--------------EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 + E ++ + + ++ E+ +L++ + ++ + D + Sbjct: 293 HGMCEFDYTIHNKRKKMDLHISEEAYLRAMAVKRRQKKQENEVLDKIKERIKEKGSDKHK 352 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ G + G+ GL+A +L ++GRP + + GSGR+I I + Sbjct: 353 ILIVNSTGIVENNGLNGLIAMKLAREYGRPVLMVKRIGE-YFKGSGRNINNSPIPDLNKM 411 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + G L GHA A G+ + + + ++ ++ ++ D + Sbjct: 412 LTDTG-LFTCKGHANAFGVEFHVSDALEVLKAIE---SELIDVNLSDIEYEADFQWT-NN 466 Query: 488 VNIALIDML---ESAGPYGAGNPNPVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQ 542 ++ +I L + + G P+ N + ++I+++ + + Sbjct: 467 LDSNIIHTLANNKDM--WCNGIDEPLIRLKNILVRKENIKLIGKTGNTLKINVNG---ID 521 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + F + E + + VN +RG QL + + S + Sbjct: 522 CVKFFLKEEQKNEIVTAPDIMYFDLICTASVNSFRGMNTPQLMIEEYSISDA 573 >gi|313623675|gb|EFR93829.1| single-stranded-DNA-specific exonuclease RecJ [Listeria innocua FSL J1-023] Length = 520 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 14/311 (4%) Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 E +G+ + P +NA GR+G ++ + LL+++D +E LA ++D N+ R+ + + + Sbjct: 9 EETIGFGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQVVVDVTKL 68 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGS 412 A A + + ++IVV G+ W+ GI+G++A++L + RP+ + + G GS Sbjct: 69 AMAAIEAK---ESLGNIIVVSGEGWNTGILGIVASKLVSVYSRPAIVLGIDPVTGIAKGS 125 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 GRS+E F + + ++ GGH MAAGLT+ N L + Q+ A + Sbjct: 126 GRSVEAFHLYQA--LDKHRSLMTAFGGHPMAAGLTLPAENLAELDNKLQEEAS-HLSDED 182 Query: 473 TTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQ 530 P KI+ +N + ++++ I LE P+G NP P+F L+ + + HL+ Sbjct: 183 FRPALKIEEKINLADISVSFIAQLEKLAPFGMDNPKPIFLLEEMNLKGTKRIGADKTHLK 242 Query: 531 MTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 ++DS+ TL AI F V S + V G L +N W K+ QLR++D Sbjct: 243 TMLANEDSDVTLDAIGFGVGDL----VEKISPHAAVDVVGELSINEWNNIKKPQLRMMDI 298 Query: 590 SPVEGHHFAKK 600 F + Sbjct: 299 HIPHWQLFDVR 309 >gi|57867492|ref|YP_189155.1| single-stranded-DNA-specific exonuclease RecJ [Staphylococcus epidermidis RP62A] gi|57638150|gb|AAW54938.1| single-stranded-DNA-specific exonuclease RecJ, putative [Staphylococcus epidermidis RP62A] Length = 588 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 105/592 (17%), Positives = 231/592 (39%), Gaps = 51/592 (8%) Query: 32 AITQKH--AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89 + ++ + + +L NR + + + +++P+ L PD L D ++ + + I Sbjct: 4 KLKGEYTPNLDPLE-YILSNRGIKEEDYEKYISPT-EELQPDWKKLEDIEEGVKSLKSKI 61 Query: 90 YN-SEKIMIFGDYDVDGAASVALMMRFLS---HCSVNANMYIPDRIVDGYGPNPSLMEKF 145 + + KI I D D DG AS ++M +FL+ + IP + +G N + + Sbjct: 62 DDDNAKIGILIDADQDGLASGSIMYKFLTKQLQFDKERIIVIPP-LNKSHGINIERVLEH 120 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 ++IT D S+ ++ + N+GI+ +VIDHH + ++N D+ Sbjct: 121 GMTSGDILITPDSASSDFEQHEELYNKGINTLVIDHHLAPKNKDSKAIIINNQLSDE-FE 179 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL--NRAY 263 L + + +L V +L D V +L DL A+ V D Sbjct: 180 NKALTGSAMTYLFCVAYCELLGIDLTV-------NLKDLAAIGLVADRANFAHDLGAYYM 232 Query: 264 VVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESNLGSRLL 321 + GL + + N+ + A+++G+ + P+INA R+G + ++++ Sbjct: 233 MRDGLRKENIDSLMLKMIINKSSNLEQGVDLNAKDIGFNVAPTINAVFRMGTQDELTQVI 292 Query: 322 ISDDSQEL--------------EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 + E ++ + + ++ E+ +L++ + ++ + D + Sbjct: 293 HGMCEFDYTIHNKRKKMDLHISEEAYLRAMAVKRRQKKQENEVLDKIKERIKEKGSDKHK 352 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ G + G+ GL+A +L ++GRP + + GSGR+I I + Sbjct: 353 ILIVNSTGIVENNGLNGLIAMKLAREYGRPVLMVKRIGE-YFKGSGRNINNSPIPDLNKM 411 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + G L GHA A G+ + + + ++ ++ ++ D + Sbjct: 412 LTDTG-LFTCKGHANAFGVEFHVSDALEVLKAIE---SELIDVNLSDIEYEADFQWT-NN 466 Query: 488 VNIALIDML---ESAGPYGAGNPNPVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQ 542 ++ +I L + + G P+ N + ++I+++ + + Sbjct: 467 LDSNIIHTLANNKDM--WCNGIDEPLIHLKNILVRKENIKLIGKTGNTLKINVNG---ID 521 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 + F + E + + VN +RG QL + + S + Sbjct: 522 CVKFFLKEEQKNEIVTAPDIMYFDLICTASVNSFRGMNTPQLMIEEYSISDA 573 >gi|126667811|ref|ZP_01738778.1| recJ: single-stranded-DNA-specific exonuclease [Marinobacter sp. ELB17] gi|126627759|gb|EAZ98389.1| recJ: single-stranded-DNA-specific exonuclease [Marinobacter sp. ELB17] Length = 660 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 155/660 (23%), Positives = 244/660 (36%), Gaps = 125/660 (18%) Query: 44 ARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 +RVL NR V S + L+ +P L D KA RI A+ ++I + D+D Sbjct: 6 SRVLDNRGVRHPEVY-----SPKNLI-NPNGLMDGHKAGMRIAAALIRRQRIALVADFDC 59 Query: 104 DGAASVALMMRFLSHCS---------------------VNANMYIPDRIVDGYGPNPSLM 142 D A A+M + L+ S + + +PDR G+G PSL Sbjct: 60 DSATGAAVMKKGLTLLSETLALAGRPKSTANPVSPDSVSDIQIVVPDRQTHGHGLTPSLA 119 Query: 143 EKFINE-GAQLIITVDCGSTSYDALQYATNQGI--DVIVIDHHQVKSEEIPAYALVNPNR 199 + I A LII + GS + A D+IV+DHH YALV+PNR Sbjct: 120 TEVIQTLEANLIIALGTGSNAQPAATLIRQWQDAPDLIVLDHHAPAGTAPDTYALVSPNR 179 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF----------DLLSLLDLVALAT 249 D L + G+ F +L+L+ R + + + L DLVAL T Sbjct: 180 SDCLFESKAIHGTGLAFYMLILVRRCMVELIGGTPRGTAMADRLRAVPMNPLSDLVALGT 239 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQG-------------NPGLKALIERVNISSPITAEN 296 + D PL NR V GL + + GL+AL+E + PIT + Sbjct: 240 IGDKAPLDANNRLLVKMGLERINKGHQMTAKASHDKGYLSYGLRALLEVAKATYPITTHD 299 Query: 297 LGYMIGPSINAGGRI----GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352 L +N+ GR+ G + G L++D+ + LA + D LN R+ ++A+ Sbjct: 300 LDVHAAQRLNSVGRLALPAGLPDCGIECLLADNQIDATRLAKRCDDLNTQRKDSQAAVEA 359 Query: 353 QAE------------AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400 A+ + T D A+ + ++ D WH G+VGL+A+RL + G F Sbjct: 360 HAKATLDSVMADLSRNNLTTHNPDHPPATALAMKDDTWHTGLVGLIASRLATQTGATVFC 419 Query: 401 ISFE-----------------------------------EDGKGIGSGRSIEGFDIGKMV 425 + E + GSGRS + + Sbjct: 420 FAPETSAQPPDDAPHNTGTENAVIWQDAHLPETGNPATGDVNWLKGSGRSDS-VHLRDAL 478 Query: 426 SF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT----PVFKI 479 +F A +L++ GHA AA +T+ R + R + ++ Sbjct: 479 AFIRASNPDLLMQYSGHAGAASVTLYRPHLPRFRRLLTEAVDYLLATAPLQSLKMEALLD 538 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSE 539 DG L A+A L +E P+G P P F + ++ + AH M ++ Sbjct: 539 DGPLPATARTFPLAHWIEQ-QPWGNQFPEPQF-TQSFRIVKAQTAMDAHQMMVAVDANAN 596 Query: 540 TLQA----------IAFRVY--GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + F G+ + G + + L V G Q V+ Sbjct: 597 PADGQSGTAEPLQMLWFNSVGLGSNGVTRSALNAGDIVTLIYRLAVKRTHGKNALQGIVV 656 >gi|196227973|ref|ZP_03126840.1| phosphoesterase DHHA1 [Chthoniobacter flavus Ellin428] gi|196227376|gb|EDY21879.1| phosphoesterase DHHA1 [Chthoniobacter flavus Ellin428] Length = 234 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 12/245 (4%) Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 M +QAEA+++ + D + + IVV WHPG+VG++A+RL+++ RP+F + F+ G G Sbjct: 1 MYQQAEAQLM-ELFDAARDAAIVVGAAGWHPGVVGIVASRLQKRHHRPTFVVGFDGAGIG 59 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 GSGRSIEG + + L K GGH MAAGLTV +F F A I+ Sbjct: 60 KGSGRSIEGLSLVAALGRC--SDFLEKHGGHEMAAGLTVREGHFAEFRQAFCACAREILT 117 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAH 528 P ++D L ++ L+D ES P+G GNP+P+FA L RV+ H Sbjct: 118 DEQLQPRLRVDAELTLGEIDYELLDQHESLQPFGMGNPHPLFAARGVTLAGEPRVMKEKH 177 Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 L + Q+ + +A+ F L V + N W+G+ Q+ V Sbjct: 178 LSLILR-QNGDEYRAVWFNSAAQELPRL-------PWDVAFQIERNEWQGTVSPQIHVRA 229 Query: 589 ASPVE 593 E Sbjct: 230 VRRSE 234 >gi|332295058|ref|YP_004436981.1| phosphoesterase RecJ domain protein [Thermodesulfobium narugense DSM 14796] gi|332178161|gb|AEE13850.1| phosphoesterase RecJ domain protein [Thermodesulfobium narugense DSM 14796] Length = 559 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 128/508 (25%), Positives = 219/508 (43%), Gaps = 40/508 (7%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW L + +++++ ++ +L NR +S + + FL+ SI DP Sbjct: 15 YRWRKPLFENILDKSVYGYVRY--------ILENRQLSESHIERFLSISIDNF--DPKFE 64 Query: 76 TD-CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 D ++A I E I IFGDYD DG SVA++ FLS+ +P R +G Sbjct: 65 NDRVERAIHIFKNMINADEPIGIFGDYDADGVTSVAILCSFLSYLGKKFIFKLPTR-DEG 123 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG ++E F + G I+ +D GS S + Q A G++++ +DHH++ + L Sbjct: 124 YGIRVEVLEFFKDMGINNIVVLDSGSNSREVWQTARKMGLNLLYLDHHEILCDLEKDLNL 183 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +NP+ L LC+AGV+F L+L+ D +LL+L + TV D + Sbjct: 184 INPH----LWNGDLLCSAGVIFRFLMLL------DIFKNCCEIFPTLLELATIGTVGDSI 233 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGES 314 L+G +R V GL + PG+ I+ E+L + + P IN+ GR+G+ Sbjct: 234 ELLGDSRIIVKLGLNQLKNSTIPGIVNFFNIKM--PYISIEDLMFYLVPLINSAGRVGKP 291 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVE 374 +L L+ + + L+ LNQ R+ ++S + + V + Sbjct: 292 DLALSFLLEKNFHKSIEKCNLLESLNQKRKSIQSQFFSICMSILNESLYS---PHVHFMR 348 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF----DIGKMVSFAVE 430 D GI+G LA+RL + +P + GSGRS ++ + Sbjct: 349 LDNCPKGIIGPLASRLACSYKKP--FFLCSGEQLLYGSGRSPGNDIDLIELYNQIKSEYP 406 Query: 431 --EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 V GGH A G T+++ F + F++F + P ID + + ++ Sbjct: 407 AINEHFVNFGGHQGAVGFTIKKDAFPEIKKRFERFRIR-----ESIPFLNIDIIFDGFSI 461 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNH 516 + L++ P+G GN + Sbjct: 462 DDNFFRALKAMTPFGFGNQKVLVCTKGI 489 >gi|225551933|ref|ZP_03772873.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia sp. SV1] gi|225370931|gb|EEH00361.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia sp. SV1] Length = 708 Score = 183 bits (464), Expect = 7e-44, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFAATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L++ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELIDTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDIGENFIKKYPNFRKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + N+ L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNRNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYTTTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ E +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-EYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|307718353|ref|YP_003873885.1| single-stranded-DNA-specific exonuclease [Spirochaeta thermophila DSM 6192] gi|306532078|gb|ADN01612.1| single-stranded-DNA-specific exonuclease [Spirochaeta thermophila DSM 6192] Length = 709 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 7/225 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 RW NR L I+++ + + + +LV R + + F+ +R L +P + Sbjct: 3 RWQKPPI--DKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLH-NPFLF 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A R++QA E+I++FGD D DG +S L+ FL + + +P + Y Sbjct: 60 EDMPLAVERVIQAKEEGERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPM-GDEQY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + +E+ G LIITVDCG +S + A G+DVIV+DHH+ K E PAYA++ Sbjct: 119 GLSLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAII 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 +P L GVV L + + LL+ Sbjct: 179 DPKVEGSGYPFRDLAGCGVVAKFLWAL--TFGLSDHFNQEVSLLN 221 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 17/396 (4%) Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + V+F + + ++ + + ++ DLV L T+ D++PL NR Sbjct: 325 YREKPPEEIDVLFSLFQAV--LMEETGVLRSMERVM---DLVGLGTLADLMPLRNENRIL 379 Query: 264 VVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322 V +GL+ PGL+AL+ R + + ++ + +GP INA GR+G ++ RLL+ Sbjct: 380 VREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGPIINASGRMGSPDVAVRLLL 439 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 D E E L +L LN R+ + + ++ + + ++ V +V D G+ Sbjct: 440 CRDPAEAEALGDELIKLNDERKRLGEDLWQRIQPQAYESFTRFKEKFV-LVYHDAVQRGV 498 Query: 383 VGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 G+LAARL +KF P+ ++ EE+G+ +GS RS +G +G + E +L++ GGH Sbjct: 499 TGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQG--VGVLNLLTACEDLLMEYGGHD 556 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 AAG ++ + + ++ L ID + S + ++ ++E P Sbjct: 557 FAAGFSLHPERLEEFIERLVEVVEDLGLPLRGEEPLTIDAEIPPSWMTPDIMKVVEFFAP 616 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 YG NP + ++ I+ + H++ A+ + EF Sbjct: 617 YGEQNPPLRLLYREAVVRDIQFIGRNGQPHIKFHLAM-GGALWPAVYWGASDKVNVEF-- 673 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 S + V N ++ + QL V+D EG Sbjct: 674 -SEDDEVDVVFTPTWNTYQNQETIQLTVVDMRRCEG 708 >gi|332297729|ref|YP_004439651.1| single-stranded-DNA-specific exonuclease RecJ [Treponema brennaborense DSM 12168] gi|332180832|gb|AEE16520.1| single-stranded-DNA-specific exonuclease RecJ [Treponema brennaborense DSM 12168] Length = 709 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 3/198 (1%) Query: 27 INRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 + ++ A + A +L R ++ + + +L +R L P + + + A RI Sbjct: 10 KEVVHELHKRFACDPLAASILARRGITTGEDIQYYLENDVRYLH-SPFLFSAMEDAVDRI 68 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 + A + EK++IFGD DVDG S AL+ R LS ++ IP DGYG + +E+F Sbjct: 69 LSAKDDGEKVLIFGDRDVDGITSTALLYRCLSGMGIDVQWRIPT-GDDGYGLSLKAVEEF 127 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 + LIITVDCG ++ + A +DVIV DHH + PA ++NP D Sbjct: 128 AADYGTLIITVDCGISNTTEIARAAELSVDVIVTDHHNPPEQLPPATIIINPKLADSGYP 187 Query: 206 QGHLCAAGVVFLVLVLIY 223 + VV+ ++ + Sbjct: 188 FKDISGCAVVYKLVSALR 205 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 159/350 (45%), Gaps = 12/350 (3%) Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA--LIERVNISSPITAENLGY 299 L LV LA + D++PL NR V +GL L + +++ ++ + Sbjct: 360 LQLVMLAALADIMPLKNENRILVRQGLASINGGVLCPGLTELLARLNLLGKKLSSTDVSW 419 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 + P +NA GR+G+ L +L +S+D++E + +A ++ LN++RR + S E + Sbjct: 420 NVVPVLNAAGRLGQPELAVKLFLSEDAKERDEIASRIIQLNKDRRQLGSDAWGYTEKQAY 479 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGF 419 + + ++VV +R H G+ G+LAA L + F P+ A++F EDG +GS RS G+ Sbjct: 480 -ESFERFGRKLVVVVDERIHRGVSGILAANLVKAFNVPAIAVTFVEDGTAVGSMRSTRGY 538 Query: 420 DIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 D+ ++++ + + GGH AAG ++ + N + + + I + + Sbjct: 539 DVTELLAQC--GDLFINHGGHNFAAGFSLVKENVVPFTERLAQLSSGIELGENDEKLPQA 596 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN---LAHLQMTFESQ 536 D + + L+ ++ P+G NP F K+ ++ HL++T + Sbjct: 597 DAEIPHEWLTPDLLKTVDLFEPFGEENPPLFFFSRKLKIIGADILGKTEKKHLKLTL-AG 655 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 A+ + +F + G + V + N + G + QL + Sbjct: 656 GKTKWPALYWSAAERLGTDF---NVGDTVDVLYQVNRNTFNGMETAQLII 702 >gi|289803643|ref|ZP_06534272.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 364 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 183/362 (50%), Gaps = 9/362 (2%) Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 +++ GAQLI+TVD G +S+ + +A I VIV DHH A A++NPN D Sbjct: 3 VDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTDHHLPGDTLPDAEAIINPNLRD 62 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL----NFDLLSLLDLVALATVCDVVPLI 257 L GV F +++ + LR +L LLDLVAL TV DVVPL Sbjct: 63 CEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLD 122 Query: 258 GLNRAYVVKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESN 315 NR +GL R + PG+KAL+E N + A +LG+ +GP +NA GR+ + + Sbjct: 123 ANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMS 182 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVE 374 +G LL+ D+ E +LA +LD LNQ R+ +E M +A + + Sbjct: 183 VGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMY 242 Query: 375 GDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEG 432 WH G+VG+LA+R+KE+F RP A + DG GSGRSI+G + + Sbjct: 243 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPD 302 Query: 433 ILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIAL 492 +++K GGHAMAAGL++E F + F + + + DG L+A+ +++ + Sbjct: 303 LMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEV 362 Query: 493 ID 494 Sbjct: 363 AQ 364 >gi|284929366|ref|YP_003421888.1| single-stranded DNA-specific exonuclease [cyanobacterium UCYN-A] gi|284809810|gb|ADB95507.1| single-stranded DNA-specific exonuclease [cyanobacterium UCYN-A] Length = 780 Score = 183 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 109/609 (17%), Positives = 225/609 (36%), Gaps = 51/609 (8%) Query: 18 WVSLLGQEGINRALAITQKHAIPD---IVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPL 73 W S + I I ++++L NRN+ ++D K FL+ + Sbjct: 8 WQSPSLVDLPPSFTNILSSFNISPQENFISQILWNRNIRTVDQLKIFLDCDSYESLSIFE 67 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG---AASVALMMRFLSHC---SVNANMYI 127 ++ + R+ A+ N EK++I G +G S +L+ L + N YI Sbjct: 68 GWSEVIPSVYRLKAAVQNKEKVIICG---KEGLNSIISTSLLWEGLGNFLIPYTQLNYYI 124 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 P +G N + +++F E LIIT S L A + GID+I I + Sbjct: 125 PSYSTRCHGFNTASIKQFAIEEVNLIITCGIKDFSLQDLSLAKSFGIDIIAIGRNINPVN 184 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 ++ L L + + ++ ++ + + + +L +LLDLVA+ Sbjct: 185 LKDLIYTIDSYSLSVDHPFFDLSETSLAYKLIESLHTEIPK----TPSDNLDNLLDLVAI 240 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQ----GNPGLKALIERVNISSPITAENLGYMIGP 303 ++ ++ L R KG+ ++Q PG+ L+ +S ++ + IG Sbjct: 241 NSISTLLKLNIELRYLTKKGIQNLQKQLKNPSRPGIAYLLYLCKLSGN-RPTDICFGIGS 299 Query: 304 SINAGGRIGESN-LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQC 362 IN+ + +S+ LL + D E LA++ ++ N ++ ++ + + Sbjct: 300 RINSVCCVNKSSSFLIELLTNKDKDYSEKLALEAELANIRCNNLQQYIIRNIRQTL--KA 357 Query: 363 DDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE------DGKGIGSGRSI 416 D+ VIV+E W I+ L+ + ++ +P+ ++ E G + Sbjct: 358 IDLSITQVIVLENPEWESEILKLIVQEVSCEYNKPTILLTTVECKENEQQNLNFSKGYAY 417 Query: 417 EGFDIGKMVSFAVEEGILVKGGGHAMA--AGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 +I + + +L G + L++ N + ++ + T+ Sbjct: 418 SSNNISSYELISSQHDLLYSFYGEEYSDLVDLSLSNENIPLFRERANQYLRQKYVEIDTS 477 Query: 475 PVF-KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-----SIRVVNLAH 528 + D + S + +L L+ PYG GN P N L+ + + + Sbjct: 478 KSIVETDLTVTVSQLGQSLFRELKILEPYGIGNLVPKLLIKNCYLKISKNNNGKTFKNHN 537 Query: 529 LQ-----MTFESQDSET-LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR-GSKR 581 L+ T ++ + + L + V L + + G+ Sbjct: 538 LKYVKTEFTLYDSSTKKGFPGVWWGHSKGE----LQNKEDIKYDVIVELGYSNLQPGNYE 593 Query: 582 CQLR-VLDA 589 +L + + Sbjct: 594 VRLIEIQEI 602 >gi|257457097|ref|ZP_05622274.1| single-stranded-DNA-specific exonuclease RecJ [Treponema vincentii ATCC 35580] gi|257445476|gb|EEV20542.1| single-stranded-DNA-specific exonuclease RecJ [Treponema vincentii ATCC 35580] Length = 711 Score = 183 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 12/354 (3%) Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYM 300 L LVAL+ + D++ L G NR V +GL GL L+ + I I ++ + Sbjct: 358 LQLVALSLLADLMQLTGENRILVKQGLAAINAAPRAGLSELMIKQGLIGKQIGTNDIAWN 417 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 I P INA GR+G+ RL + D LA + +N++R+ + AE Sbjct: 418 ITPVINATGRMGKPETAIRLFLEKDPGVRNELATAIIAMNEDRKELGKTGWAVAEPIARE 477 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 ++ +VV D+ H GI G+L+ RL ++F PS I E+G +GS RS G+ Sbjct: 478 SLAKYREKLTVVV-SDKIHRGITGILSNRLADRFNVPSMVICLMENGTAVGSLRSARGYR 536 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479 + ++ + GGHA AAG ++ + Q+F I P I Sbjct: 537 VLSLLEA--YPDFFLDYGGHAFAAGFSLMQEKVAPFLKKVQEFTAAIEFDENSEHPSLAI 594 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL---AHLQMTFESQ 536 D L + L+ +L++ PYG G P +FA + + ++ HL++T Sbjct: 595 DAELPHGYLTPDLLTVLDTFEPYGEGFPPLLFAVKGVTITAASIMGKTQPQHLRLTL-DC 653 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + A+ ++ EF + G + + N + G+ Q+ + D Sbjct: 654 GTYKWTAVYWQAADKLNVEFKI---GDSIDAVFTVSRNSFNGNTVPQMVIQDMR 704 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 W I ++ Q++ +VA +L+ R ++ A L +R + +P + Sbjct: 2 NWEKKDIDPDI--VRSMAQQYGCSPLVASILLRRGIAEGSEAFFHLENDLRYVH-NPFLF 58 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 T+ + A R++ A E+++IFGD D DG +V ++ L+ + IP + Y Sbjct: 59 TNMEDAVDRLLDAKEEGERVLIFGDRDADGITAVTVLYEALTDLGILTTWRIPT-GDEPY 117 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ +G LI+TVDCG ++ + + YA +GIDVIVIDHH + + A ++ Sbjct: 118 GLSCEAVDAHEADGGTLIVTVDCGISNIEEIAYAAEKGIDVIVIDHHTPQDKLPDAAVII 177 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 N HL + V+V + + LL+ Sbjct: 178 NCKVPGSGYPNSHLSGCATAWKVVVALR--FGLLDIYKQQICLLN 220 >gi|158834161|gb|ABW81885.1| 5'-3' exonuclease [Candidatus Regiella insecticola] Length = 298 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 157/298 (52%), Gaps = 8/298 (2%) Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 A S AL + L + +P+R +GYG +P ++E + A LI+TVD G +S Sbjct: 1 ATSTALAVLALRSMGAKDVKYLLPNRFEEGYGLSPMIVELVARQNAALIVTVDNGISSPA 60 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 ++ A +GI V+V DHH A A++NPN L GV F +++ + Sbjct: 61 GVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLMLALRA 120 Query: 225 ILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQGNPGL 279 L+ + +L LLDLVAL TV DVVPL NR + +GL + ++ PG+ Sbjct: 121 RLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILIHQGLSRIRAKRCRPGI 180 Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 +AL++ + A +LG+ +GP +NA GR+ + ++G LL+SDD +LA +L+ Sbjct: 181 QALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILAEELNT 240 Query: 339 LNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFG 395 LNQ RR +E M +A A + D I + +WH G+VG+LA+R+KE+F Sbjct: 241 LNQERREIEQGMQLEALALCNALEDSDHILPYGIAMYHKKWHQGVVGILASRIKERFH 298 >gi|216264336|ref|ZP_03436328.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 156a] gi|215980809|gb|EEC21616.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 156a] Length = 708 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I + A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTLEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|315186022|gb|EFU19785.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta thermophila DSM 6578] Length = 709 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 5/207 (2%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLIL 75 RW NR L I+++ + + + +LV R + + F+ +R L +P + Sbjct: 3 RWQKPPI--DKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLH-NPFLF 59 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A R++QA E+I++FGD D DG +S L+ FL + + +P + Y Sbjct: 60 EDMPLAVERVIQAKEERERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPM-GDEQY 118 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + +E+ G LIITVDCG +S + A G+DVIV+DHH+ K E PAYA++ Sbjct: 119 GLSLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAII 178 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 +P L GVV L + Sbjct: 179 DPKVEGAGYPFRDLAGCGVVAKFLWAL 205 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 174/396 (43%), Gaps = 17/396 (4%) Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 + V+F + + ++ + + ++ DLV L T+ D++PL NR Sbjct: 325 YREKPPEEIDVLFSLFQAV--LMEETGVLRSMERVM---DLVGLGTLADLMPLRNENRIL 379 Query: 264 VVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322 V +GL+ PGL+AL+ R + + ++ + +GP INA GR+G ++ RLL+ Sbjct: 380 VREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGPVINASGRMGSPDVAVRLLL 439 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 DS E E L +L LN R+ + + ++ + + ++ V +V D G+ Sbjct: 440 CRDSAEAEALGDELLKLNDERKRLGEDLWQRIQPQAYESFTRFKEKFV-LVYHDAVQRGV 498 Query: 383 VGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 G+LAARL +KF P+ ++ EE+G+ +GS RS +G +G + E +L++ GGH Sbjct: 499 TGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQG--VGVLNLLTACEDLLMEYGGHD 556 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 AAG ++ + + ++ L ID + S + ++ ++E P Sbjct: 557 FAAGFSLHPERLEEFIERLVEVVEDLGLPLRDEEPLIIDAEIPPSWMTPDIMKVVEFFAP 616 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 YG NP + ++ I+ + H++ A+ + EF Sbjct: 617 YGEQNPPLRLLYREAVVRDIQFIGRNGQPHVKFHLAM-GGSLWPAVYWGASDKVNVEF-- 673 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 S + V N ++ + QL V+D EG Sbjct: 674 -SENDEVDVVFTPTWNTFQNQETIQLTVVDMKRCEG 708 >gi|15594599|ref|NP_212388.1| single-stranded-DNA-specific exonuclease (recJ) [Borrelia burgdorferi B31] gi|2688156|gb|AAC66639.1| single-stranded-DNA-specific exonuclease (recJ) [Borrelia burgdorferi B31] Length = 708 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFRKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDGNILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|226320554|ref|ZP_03796114.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 29805] gi|226233973|gb|EEH32694.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 29805] Length = 708 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNVYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|225550130|ref|ZP_03771090.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 118a] gi|225369242|gb|EEG98695.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 118a] Length = 708 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 181/476 (38%), Gaps = 32/476 (6%) Query: 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 S ++ ++L + + I ++ + N I + + L Sbjct: 238 SNYILKQYLR-LNNKNDPLINSNKLEKFVQNK-------------CIIIFNKEDQNELLN 283 Query: 168 YATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227 + I++ ID + ++ P + L + + + + Y ++ Sbjct: 284 KHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEVEIKDKLYYIFYNVIF 343 Query: 228 QDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287 + NK L L L VA+ T+ D +P+I NR + GL + + L++ N Sbjct: 344 ETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIALRERMSINYLLKDAN 402 Query: 288 I--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRL 345 I IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E ++ +N+ R+ Sbjct: 403 ILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIENKFKEIKEINELRKY 462 Query: 346 MESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE 405 E + + IV + GI +A RL + + + ++ ++ Sbjct: 463 KEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRLSSYYQKVAIFLTKQD 517 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 GS RS + ++S ++ GGH AAG T+ + Sbjct: 518 -NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHENLLEDFIKELEYATT 575 Query: 466 NIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV 524 + ID +L + +L +E PYG P+ N LQ ++++ Sbjct: 576 KVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREPILLMKNAYLQELKII 635 Query: 525 NL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 + H+ M +SQ+ + +AI F GT E L + + + + +++ Sbjct: 636 DKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYLDIIFTVNEDFY 688 >gi|225549170|ref|ZP_03770145.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 94a] gi|225370396|gb|EEG99834.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 94a] Length = 706 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 75/367 (20%), Positives = 150/367 (40%), Gaps = 18/367 (4%) Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL + Sbjct: 331 KLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIALRER 389 Query: 277 PGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 390 MSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIENKFK 449 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 ++ +N+ R+ E + + IV + GI +A RL + Sbjct: 450 EIKEINELRKYKEEKAWNS-----HDKNTIFKNDKFIVCYDNNTPKGISSRIATRLSSYY 504 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 505 QKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHENLLE 562 Query: 455 RLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 + + ID +L + +L +E PYG P+ Sbjct: 563 DFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREPILLM 622 Query: 514 PNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 N LQ +++++ H+ M +SQ+ + +AI F GT E L + + + Sbjct: 623 KNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYLDIIF 679 Query: 570 HLCVNYW 576 + +++ Sbjct: 680 TVNEDFY 686 >gi|224533136|ref|ZP_03673736.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi WI91-23] gi|224511863|gb|EEF82264.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi WI91-23] Length = 708 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKNININTIDISENFIKKYPNFRKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HDKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|221217762|ref|ZP_03589230.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 72a] gi|221192439|gb|EEE18658.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 72a] Length = 708 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|224533722|ref|ZP_03674310.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi CA-11.2a] gi|224513015|gb|EEF83378.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi CA-11.2a] Length = 708 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQTQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|312149627|gb|ADQ29698.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi N40] Length = 708 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQTQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 83/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ I++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQEIKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|223888713|ref|ZP_03623304.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 64b] gi|223885529|gb|EEF56628.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi 64b] Length = 708 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK +RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNVYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|226321572|ref|ZP_03797098.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi Bol26] gi|226232761|gb|EEH31514.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi Bol26] gi|312148300|gb|ADQ30959.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi JD1] Length = 708 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK +RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|218249182|ref|YP_002374777.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi ZS7] gi|218164370|gb|ACK74431.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia burgdorferi ZS7] Length = 708 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK +RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 167/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNKLLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSTDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|195941392|ref|ZP_03086774.1| single-stranded-DNA-specific exonuclease (recJ) [Borrelia burgdorferi 80a] Length = 708 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQAQELTRIAKQYNINTFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK +RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFIKRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV + GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HDKNTIFKNDKFIVCYDNNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L + +L +E PYG P Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESIPIDAILPKNLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILLMKNAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELDIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|237733214|ref|ZP_04563695.1| single-stranded-DNA-specific exonuclease recJ [Mollicutes bacterium D7] gi|229383758|gb|EEO33849.1| single-stranded-DNA-specific exonuclease recJ [Coprobacillus sp. D7] Length = 587 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 120/484 (24%), Positives = 203/484 (41%), Gaps = 46/484 (9%) Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 DP +L D AA I++ +KI I GDYD DG + +++ + + N N IPD Sbjct: 43 HDPRLLNDAQSAAEYILKT---DKKIFICGDYDCDGIMATSILFNTIKQFNSNVNFMIPD 99 Query: 130 RIVDGYGPNPSLMEKFINEGAQ---LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 RI+DGYG N +++ + LI+T D G ++A+ YA + G+ VIV DHH V Sbjct: 100 RIIDGYGLNIRMIDVIKTQVPPNEVLILTCDNGIACFEAIDYAKSLGMTVIVTDHHTVGE 159 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 + A +V+P + A V + + + + N L A Sbjct: 160 KLPNADFIVHPAL--GNYPFKEISGATVAYKLCQ-LIIEMGGLNIPNLEISNKQF---AA 213 Query: 247 LATVCDVVPLI---------GLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAEN 296 + V DV+P+ NR + +G+ R + +K L E N + + Sbjct: 214 ITVVSDVMPICSYYYDTMKVNENRRLLQEGITSMRNNPDWHIKMLSEMCNFNMETLDETT 273 Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQE--LEMLAMKLDVLNQNRRLMESAMLEQA 354 +G+ I P +NA GRI +++ + + L LN+ R+ M+ A L +A Sbjct: 274 IGFNIAPVLNASGRIAKADYAVDFFTKEQKDRDAAIVDCSYLVYLNEERKKMKIAELNKA 333 Query: 355 EAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDG---KGIG 411 E+ V + + H G++G++A + +K+ PS + + G Sbjct: 334 ESVVCGKSIKLA-------FYPELHKGLIGIVAGQFTDKYKVPSGIFTQVKKDGTVLWTG 386 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA--HNIVP 469 S RS + ++ ++ +V GGHA AAG+T+ N +K+ + P Sbjct: 387 SMRSNT-VHLYNALTEISKKCPIVAFGGHAGAAGITIADENIDLFKQIAEKYFYTNACEP 445 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV-NLAH 528 A V VL+A ++ P+G G P P F N S+ V H Sbjct: 446 ANYAIEVKDYRSVLDAGEC-------IKELKPFGNGLPKPQVKF-NFFCTSVDVFYKSGH 497 Query: 529 LQMT 532 ++++ Sbjct: 498 VKLS 501 >gi|323341705|ref|ZP_08081938.1| hypothetical protein HMPREF0357_10118 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464130|gb|EFY09323.1| hypothetical protein HMPREF0357_10118 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 510 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 108/516 (20%), Positives = 222/516 (43%), Gaps = 45/516 (8%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 ++A +++ + K+++ GDYD DG +S ++ + C + YIP+R+ +GYG + Sbjct: 36 NEAIDSMIRFYQTATKLIVCGDYDCDGVSSTSIAVLLAKKCKIEVGYYIPNRLKEGYGVS 95 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 + G + ++ +D G +++ + YA + G+ V V+DHH + + A A ++P+ Sbjct: 96 KDTITMAHERGYKDVLIIDNGVKAHEEIAYAKSLGMQVAVVDHHIIDEPVM-ADAFLHPD 154 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG 258 S + +CA+G+++ V + ++ +L + ATV DV+PL G Sbjct: 155 V--CSSYEASMCASGLIYCV----AETMGLSDEY--------MLAMACTATVADVMPLWG 200 Query: 259 LNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE---SN 315 NR V KG+ + AL++R + +A+ L + P IN GR+G+ N Sbjct: 201 KNREIVRKGIHALNQNQFLQFDALVKRNRFTHY-SAKLLSFQAIPKINTVGRLGDLANVN 259 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 + + D + A +L LN R+ A+ E A +V + ++ Sbjct: 260 TLVQYFTTTDESVITSYAKQLFKLNDYRKEQGKALKEVAMMQV-------NDDPIQIIVD 312 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 R+H G++G++A ++ ++ +P+ ++ + GS RS+ F + + + V Sbjct: 313 KRFHEGLLGIVANQVAQETMKPTLVLTEYD-NVLKGSARSMT-FSLQDIFTEV-RSDYFV 369 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGH A G+T+ + F + + ++ S + A ++ Sbjct: 370 AMGGHDFAYGMTLNKATFEDFKSDVNQIVSDFGAFEGRHESV---LSIDPSWITQAALEQ 426 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQ-AIAFRVYGTPLG 554 L P+G G P+ + + + +N + F + + A+ F Sbjct: 427 LRQLEPFGEGFKLPLMSIKIPRDFQLFNLNGYGFKYAF---NGFSFDEAVFF---TQQYQ 480 Query: 555 EFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ +Q+ + + G L ++ + L V D Sbjct: 481 KYQLQTARR---LIGTLDLDS---RSKNVLFVEDFE 510 >gi|219684751|ref|ZP_03539694.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii PBr] gi|219672113|gb|EED29167.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii PBr] Length = 708 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I I +++ I A +L+ R + + FL S L+ +P +L Sbjct: 2 KIWKQKETNIPIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDS-TNLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DK RI +AI ++E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KDIDKFINRINKAIKDNESILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH + ++ Sbjct: 120 GLSKELINMALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%) Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + + + Y I+ + NK L L L VA+ T+ D +P+I NR + Sbjct: 322 YFRYKEVEIKDKLYYIFYNIIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILK 380 Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L++ Sbjct: 381 AGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLA 440 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 DD ++E ++ +N+ R+ E + + IV GI Sbjct: 441 DDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 495 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 LA RL + + + ++ ++ GS RS + K + + +++ GGH A Sbjct: 496 SRLATRLSAYYQKVAIFLTKQD-NIIKGSIRSNNKIN-SKALISTIPSHLIINSGGHKAA 553 Query: 444 AGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AG T+ + + ID ++ + +L +E PY Sbjct: 554 AGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDAIVPKNLTKDSLFKTIEIFEPY 613 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 G P+ N LQ ++ ++ H+ M +SQ+ + +AI F GT E L Sbjct: 614 GYEFREPILMMENVYLQELKTIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 670 Query: 559 QSRGKRMHVTGHLCVNYW 576 + + + + +++ Sbjct: 671 IKENQYLDIIFTINEDFY 688 >gi|51598514|ref|YP_072702.1| single-stranded-DNA-specific exonuclease [Borrelia garinii PBi] gi|51573085|gb|AAU07110.1| single-stranded-DNA-specific exonuclease [Borrelia garinii PBi] Length = 708 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I I +++ I A +L+ R + + FL S L+ +P +L Sbjct: 2 KIWKQKETNIQIQELTRIAKQYNINPFEATLLIKREIKEEDFIFFLEDS-TNLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D DK RI +AI +E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KDIDKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH + ++ Sbjct: 120 GLSKELINIALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%) Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + + + Y I+ + NK L L L VA+ T+ D +P+I NR + Sbjct: 322 YFRYKEVEIKDKLYYIFYNIIFETNKNLLQRCLKR-LSFVAIGTIADNMPIINENRIILK 380 Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L++ Sbjct: 381 AGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLA 440 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 DD ++E ++ +N+ R+ E + + IV GI Sbjct: 441 DDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 495 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 LA RL + + + ++ ++ GS RS + K + + +++ GGH A Sbjct: 496 SRLATRLSAYYQKVAIFLTKQD-NIIKGSIRSNNKIN-SKALISTIPSHLIINSGGHKAA 553 Query: 444 AGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AG T+ + + ID ++ + +L +E PY Sbjct: 554 AGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDTIVPKNLTKDSLFKTIEIFEPY 613 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 G P+ N LQ ++ ++ H+ M +SQ+ + +AI F GT E L Sbjct: 614 GYEFREPILMMENVYLQELKTIDKNHNSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 670 Query: 559 QSRGKRMHVTGHLCVNYW 576 + + + + +++ Sbjct: 671 IKENQYLDIIFTINEDFY 688 >gi|251772535|gb|EES53101.1| putative RecJ exonuclease [Leptospirillum ferrodiazotrophum] Length = 555 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 123/594 (20%), Positives = 216/594 (36%), Gaps = 67/594 (11%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W + A+++ + + RVL+ R + + + P L Sbjct: 12 RDWDVQ--DTDESSVYALSRAWGLDPVWVRVLLGRGIDK---RSYERDITSPAPPGDDSL 66 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + + + E ++++ D DVDG +S A++ RF + + + +R DG Sbjct: 67 GEMAEPRAWFHDLLSSGEPVLVYADLDVDGLSSAAILSRFFRLRHHSHAVLLANR-EDGR 125 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 PS + F +G + II D G++S D L+ +G+ +V+DHH V E + Sbjct: 126 SLLPSRIRPFQKKGFRRIIVCDMGTSSADVLRMLLGEGMSCLVVDHHLVPEEWPRHSVPL 185 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 S AA + R + P L L+ + D P Sbjct: 186 VH--PSGRSALTSAGAAYT-------LIRPYLSSEEEPQMAFL------AGLSVLGDRAP 230 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 LI NR + L PG++ L+ R +PI + + + P +NA GR+G+ + Sbjct: 231 LIRENRYLTLSLLSEETLAVFPGIRLLLRRRVRRAPI-VSDYSFGVIPFLNAPGRMGDPS 289 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 LL+S + E E L +N+ R+ +E + E+ K + V Sbjct: 290 PSFDLLMSSSAGESEKTVAVLLEMNRRRQELEWLLYEEIRRKGPEE---------FVFFD 340 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 W PG++G +A R+ E++ R F + GS R G +++ G+ + Sbjct: 341 KDWFPGVLGRVAHRVSEEWNRTVFVGTMTASFTIRGSIRCRNGDRFSDIMAAL--SGLPI 398 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHN--------IVPALITTPVFKIDGVLNASA 487 GGGH MA GL + + + + +ID L A Sbjct: 399 TGGGHPMAGGLEFPADLLPEVSRRLSRLINTSPLNPEGGTMEGGDERDPLRIDAFLPAYF 458 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 N + P+G G P+F +++ E + + +QA A+R Sbjct: 459 RNPIFWEGYRKLFPFGEGFSRPLFGVRRARIE------------RLEEGNGK-MQACAYR 505 Query: 548 VYGTPLGEFLMQ-----SRGKRMHVTGHLCVNYWRGS----KRCQLRVLDASPV 592 F + S G+ + + RG +R V D P Sbjct: 506 WRHGSGRAFFREGEAILSPGQDYDLVVTPEI---RGKGDYLERL-FVVADYRPA 555 >gi|4101624|gb|AAD01239.1| unknown [Borrelia burgdorferi N40] Length = 476 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQTQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 57.5 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 3/202 (1%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLE 352 ++ +N+ R+ E Sbjct: 448 NKFKEIKEINELRKYKEEKAWN 469 >gi|325273844|ref|ZP_08140026.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp. TJI-51] gi|324101021|gb|EGB98685.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas sp. TJI-51] Length = 210 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 8/214 (3%) Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGG 438 G++G+LA+RLKE++ RP+ A + G GS RS+ GF I + A ++ K G Sbjct: 1 GVIGILASRLKERYHRPTIAFADAGAGMLKGSARSVPGFHIRDALDAVAARHPQLISKFG 60 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGL++ NF + F + + T DG L ++ L L + Sbjct: 61 GHAMAAGLSLPEANFPAFAEAFDEEVRRQLREDDLTGRLLSDGSLAVEEFHLDLAKALRN 120 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPLGEFL 557 AGP+G P P+F +L RVV HL++ +S+ S L IAF + + Sbjct: 121 AGPWGQHFPEPLFHG-VFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDR----DVW 175 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + L VN +RG++ QL + P Sbjct: 176 PNPTVRWVELAYKLDVNEFRGNESVQLMIAHMEP 209 >gi|260889847|ref|ZP_05901110.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] gi|260860453|gb|EEX74953.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] Length = 244 Score = 179 bits (455), Expect = 9e-43, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 10/230 (4%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 +W E + + + +++R+L+NR + + + FLN + + +P + Sbjct: 18 KWELKSYNEDYLTSK--SSEFGESKLISRLLLNREINTKEKVSKFLNSDKKDIH-NPFLF 74 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + +K RI +A N EKI+I+GDYDVDG + VA ++ L +N + YIP+R+ +G Sbjct: 75 ENMEKVVERIKKAGRNKEKIVIYGDYDVDGISGVAYLVIMLRKLGLNVDYYIPNRVHEGI 134 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH------QVKSEEI 189 G N +L+ A+L ITVD + + + N GID+I+ DHH + +E Sbjct: 135 GINKNLLNFLKKRDAKLFITVDISINNCEEILMLKNSGIDIIITDHHRQIGILEDGEQEK 194 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLL 239 L + + L +GV F + IY + K +L Sbjct: 195 ELDILTINPKTSSIYPNKSLSGSGVAFKLADAIYERYGANKKYCTIIWML 244 >gi|255027798|ref|ZP_05299784.1| hypothetical protein LmonocytFSL_18151 [Listeria monocytogenes FSL J2-003] Length = 323 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 15/333 (4%) Query: 268 LMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDS 326 + R N GL L ++ ++ T E +G+ + P +NA GR+G ++ + LL+++D Sbjct: 1 MRQLRESANLGLAVLAKKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLLTEDP 60 Query: 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLL 386 +E LA ++D N+ R+ + + A + + +V+VV G+ W+ GI+G++ Sbjct: 61 EEALFLAEEIDDANKERKQIVVDTTKLAMEAIEAK---DTLGNVLVVYGEGWNTGILGIV 117 Query: 387 AARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAG 445 A++L + RP+ + + G GSGRS++ F + + +++ GGH MAAG Sbjct: 118 ASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQA--LDKHRDLMMAFGGHPMAAG 175 Query: 446 LTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAG 505 LT+ N L Q+ A + P KI+ + + V++A I LE P+G Sbjct: 176 LTLPAENLTELEAKLQEEAS-YLSEEDFRPALKIEEKIKLADVSVAFIAQLEKLAPFGMD 234 Query: 506 NPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRVYGTPLGEFLMQSRG 562 NP P+F N L+ + + HL+ +++++ TL +I F V S Sbjct: 235 NPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFGVGDL----VDKISPT 290 Query: 563 KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + V G L +N W K+ QLR++D Sbjct: 291 AAVDVVGELSINEWNNVKKPQLRMMDIHISHWQ 323 >gi|224532079|ref|ZP_03672711.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia valaisiana VS116] gi|224511544|gb|EEF81950.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia valaisiana VS116] Length = 708 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W + I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKVINIQPEELSRIVKQYNINHFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI +E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH + ++ Sbjct: 120 GLSNELINMALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFQTESIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 168/431 (38%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + L + I++ ID + ++ P + L + Sbjct: 269 YIVIFNKEDQGQLLNKHFKRSINMNTIDISENFIKKYPNFRKKTLKDLIQATKYFKYKKI 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK + L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNLIFEINKNLIQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI ITA ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMPINYLLKDANILTKPNITATDIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E ++ ++ IV GI +A RL Sbjct: 448 NKFKEIKKINELRKYKEEKAWNS-----HSKNTILKNDKFIVCYDKNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ ++ GS RS + ++S +++ GGH AAG T+ Sbjct: 503 SSYYQKVAIFLTKQD-NIIKGSIRSNNKINSKALISIV-PSHLIINSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID +L +L +E PYG P Sbjct: 561 NLLENFIKELEYATTKVEYETTNENESISIDAILPKDLTKDSLFKTIEIFEPYGYEFREP 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 + N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 ILMMENAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELNIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|290953249|ref|ZP_06557870.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica URFT1] gi|295313529|ref|ZP_06804122.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica URFT1] Length = 383 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 167/393 (42%), Gaps = 22/393 (5%) Query: 209 LCAAGVVFLVLVLIYRI-LRQDNKVPLNFDLLSLLDLVALATVCDVVPL--IGLNRAYVV 265 + V +L + + R L+ + + ++ L +LLD VA+ TV D V + NR Sbjct: 1 IAGCMVAWLFMAALRRKYLQNNKMISQSYGLSNLLDFVAIGTVADCVSMATSHNNRIVTK 60 Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325 G+ + + +++E +G+ I P +N+ GR+ ++ L+ +D Sbjct: 61 FGIEQLKNNQRLCWDFV-----DKDKLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEED 115 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385 ++E + L N R+ ++ + ++A + QQ + + + + H GI G+ Sbjct: 116 EHKIEDIFDNLKQQNNQRKEIQKKLTQEAIVQAYQLN---QQKNSLCILLEDGHSGIHGI 172 Query: 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF----AVEEGILVKGGGHA 441 A+R+KE FG+ S + + SG + +I E +++K GGH Sbjct: 173 SASRIKEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHK 232 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALI--TTPVFKIDGVLNASAVNIALIDMLESA 499 AAGLT+++ +F + F+ +I+ P+ + D L+ + +D +++ Sbjct: 233 GAAGLTIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDAL 292 Query: 500 GPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFL 557 P+G P+F L+++R+V H Q+ ++ +++AI F + E L Sbjct: 293 EPFGREFEKPLFCNQ-FMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNATDNKILEQL 351 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + G + L + G L + Sbjct: 352 II--GDCIKACYELQKEEFLGQINLSLNIKTIE 382 >gi|296126378|ref|YP_003633630.1| single-stranded-DNA-specific exonuclease RecJ [Brachyspira murdochii DSM 12563] gi|296018194|gb|ADG71431.1| single-stranded-DNA-specific exonuclease RecJ [Brachyspira murdochii DSM 12563] Length = 719 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 97/436 (22%), Positives = 182/436 (41%), Gaps = 20/436 (4%) Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 YD++ G ++ K+ + A AL D L +F + Sbjct: 299 LPEYDSVYDLLQLGAKYGNVNIKTTKTLDDFALALNINIYKYDNIEYRDLIIKTEIFRRM 358 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 I + L + LV TV DVVPLI NR YV L + + Sbjct: 359 FYISQK-------NLQNYIRKKSILVLFGTVADVVPLIEENRVYVKCALKELEKPSHIRY 411 Query: 280 KALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 ++E++N+ ++ + + + + I P INA GR+G + +LL + +E LA + Sbjct: 412 NVMLEKINLLNTKVDTQVISWRIAPFINAAGRMGSAETALKLLTCELREEAVSLAETVYS 471 Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 +N+ R+ + + + + + + +I+V + G+ GL+A ++ ++G+ + Sbjct: 472 MNETRKSLTESNFNIVNEYI--KNNSCLKLPIIIVRSKKIEQGLTGLIAGKVLSEYGKTA 529 Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 + +DG +GS RS + ++ A L K GGH AAG T+ NF + Sbjct: 530 VIMHESDDGTCVGSIRSRGDDNARDLLEAA--SVYLTKFGGHKNAAGFTLSSDNFDKFQS 587 Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518 K+A N D L+ +++++ L LE PYG+GN P+F N K+ Sbjct: 588 KIIKYAANQNFNTEKDNDV-FDLELDFNSIDLKLAKDLELFEPYGSGNEEPIFISKNVKV 646 Query: 519 QSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 I+ + HL++ D + + AI + + + L + + + L VN Sbjct: 647 NDIKKMQKNNKLHLRLELLQSD-KKINAIIWNSSEEEVLKLLNSN---YIDIIYKLKVNR 702 Query: 576 WRGSKRCQLRVLDASP 591 + S+ ++ + + Sbjct: 703 YANSEDARIYIENYKV 718 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 3/186 (1%) Query: 38 AIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 + I+ +L R ++ + DF I L +P + D + R+ +AI ++EKI+ Sbjct: 6 NLHPIMKELLNLRGITSKEDIFDFFFQDIYSL-SNPFSIKDVNVFVARLKEAIESNEKIL 64 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 ++GD D DG + +++ L + N ++P+ GYG + ++E++ N G LIITV Sbjct: 65 VYGDKDADGVTAASIIYNTLKMVTKNVEAFVPN-HETGYGLSKMVIEEYANSGVSLIITV 123 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 DCG ++ + +++A + ID+IV DHH + AYAL NP + + V F Sbjct: 124 DCGISNVEEVEFARDLSIDIIVTDHHDIPEIMPNAYALFNPKISNTGFVSKNFSGCAVAF 183 Query: 217 LVLVLI 222 ++ Sbjct: 184 KLMQAF 189 >gi|325971472|ref|YP_004247663.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta sp. Buddy] gi|324026710|gb|ADY13469.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta sp. Buddy] Length = 709 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 5/207 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDPLILT 76 W + +++ + + A +LV R VS + K FL + L +P + Sbjct: 3 WN--KSPVSAQEIRRLHEQYGLDMLSASILVRRGQVSSEQVKFFLEQELTYLH-NPFLFD 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D ++ RI +AI EK+ + GD DVDG S AL+++ L + +P+ D YG Sbjct: 60 DMEEVVDRINEAIVEGEKVCVVGDRDVDGITSTALLVQELRTMGLEVGYQLPE-GDDPYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 ++K + L+ITVDCG +++ + +A + GID IV+DHH PA A+++ Sbjct: 119 MTLRGVDKAYEDKVTLMITVDCGISNFAEIAHAHSLGIDTIVLDHHISGDTLPPALAIID 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223 P HL GVV V+ + Sbjct: 179 PKMPGSGYPFEHLAGCGVVAKVIWALR 205 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 107/468 (22%), Positives = 195/468 (41%), Gaps = 24/468 (5%) Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA----- 191 PS + L I V L+ A ++ ID+ V+D +P Sbjct: 253 LPPSQSKALAFLSCGLPILVLDAQAELVQLKQAFSKKIDIHVVDMRSQMEAVMPVMKNKG 312 Query: 192 -YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 +AL N +R S G V+F + V L+ + S+LDLVA+ TV Sbjct: 313 LFALSNISRAIKYSPFG-KDELQVLFTLFVAYC----MKRYPGLDTEYESILDLVAIGTV 367 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGG 309 D++P+ NR V +GL V + L L N+ ++ ++ + I P INA G Sbjct: 368 ADLMPMEDENRIMVKRGLKVLAQGRRESLMPLFSMQNLLGKQLSTSDISWQISPVINASG 427 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQAS 369 R+G+ ++ +++S+D + E LA +L LN+ R+ + ++ + + Sbjct: 428 RMGKPSVALEMMLSNDISQTEELAGQLLRLNKERQKLGEEAWDRMLKMA-KDSFEATGSK 486 Query: 370 VIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV 429 ++VVE GI G++A+RL ++F P+ ++ +G+ S RS + F+ + Sbjct: 487 LVVVEDSTLSRGITGVMASRLLKQFNAPAIVLATVAEGRVSASMRSPDSFNARDF--LSR 544 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 + + GGHA A G +++ ++ ID L + + Sbjct: 545 FSDLFLDFGGHACAGGFSMDISQLEIFKKRVMDEIDSMDCLPEEVAEINIDCTLPEAYMT 604 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA-----HLQMTFESQDSETLQAI 544 +I ++E PYG N VF +++I+++N H++MT + A+ Sbjct: 605 PDIIKVVEFFEPYGEKNTPLVFLMEGAVIENIQIMNNKNGSVQHVKMTLAFGE-YKWPAL 663 Query: 545 AFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + +F G + + L NY+R + Q+ +LD P Sbjct: 664 YWNAADRIGKDF---DVGTSVDIAFRLGRNYFRNQETLQITILDLKPS 708 >gi|15639691|ref|NP_219141.1| single-stranded-DNA-specific exonuclease (recJ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025929|ref|YP_001933701.1| single-stranded-DNA-specific exonuclease [Treponema pallidum subsp. pallidum SS14] gi|3323008|gb|AAC65672.1| single-stranded-DNA-specific exonuclease (recJ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018504|gb|ACD71122.1| single-stranded-DNA-specific exonuclease [Treponema pallidum subsp. pallidum SS14] gi|291060068|gb|ADD72803.1| single-stranded-DNA-specific exonuclease RecJ [Treponema pallidum subsp. pallidum str. Chicago] Length = 706 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 88/357 (24%), Positives = 148/357 (41%), Gaps = 12/357 (3%) Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSPITAENLGYM 300 L LVA++T+ D++ L G NR V GL GL+ L + + +G+ Sbjct: 357 LQLVAISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAIQRLMGKKLGTVEVGWS 416 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 I P INA GR+G + L + ++ + + A K+ LN+ R+ + + E Sbjct: 417 IVPLINATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARA 476 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 + + VV D+ H G+ G+LA L E P I DG +GS RS G+ Sbjct: 477 SLETYSNR-LAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYH 535 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479 + + GGHA AAG ++ +L + +A I + Sbjct: 536 L--FSLLDPLADLFSDYGGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEF 593 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536 D L+A+ + L+ +++ PYG GNP F K+ S + H+++T ++Q Sbjct: 594 DAELDATQMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTLDAQ 653 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 + AI + EF + G + + N ++G+ QL + D E Sbjct: 654 VHK-WPAIYWGAGEKLAQEF---AVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE 706 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 6/209 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLI 74 RW + EG R +T +++ + A +LV R V A F +R L P P Sbjct: 2 KRWRAKALDEG--RVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYL-PGPFR 58 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 A R+ A EK++IFGD D DG ++ L+ L + +P + Sbjct: 59 FHAMSAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEALCAFGLTVCWRVPV-ADEP 117 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG + + +++ G LI+TVDCG ++ + YA ++GIDV+VIDHH +P + Sbjct: 118 YGLSCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVLVIDHHAAPET-LPDAII 176 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 +N L + V+ + Sbjct: 177 INAKVPGAGYPHEFLSGCATAWKVVTALR 205 >gi|111115079|ref|YP_709697.1| single-stranded-DNA-specific exonuclease [Borrelia afzelii PKo] gi|216263975|ref|ZP_03435969.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia afzelii ACA-1] gi|110890353|gb|ABH01521.1| single-stranded-DNA-specific exonuclease [Borrelia afzelii PKo] gi|215980019|gb|EEC20841.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia afzelii ACA-1] Length = 706 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+ R + + FL S+ L+ +P +L Sbjct: 2 KIWKQKEINIQAQELNRIVKQYNINPFEATLLIKREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK +RI +AI +E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFIKRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH + ++ Sbjct: 120 GLSNELINMALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPSEDFKTESIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 73/378 (19%), Positives = 146/378 (38%), Gaps = 18/378 (4%) Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + + + Y I+ + NK L L VA+ T+ D +P+I NR + Sbjct: 320 YFKYKEVEIKEKLYYIFYNIIFETNKNLFQKCLKR-LGFVAIGTIADNMPIINENRIILK 378 Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + + L++ I IT+ ++ Y I P +N+ GR+ ++++ L++ Sbjct: 379 IGLKEIALRERMSINYLLKDAGILTKPNITSIDIAYKIAPILNSTGRLEKADIAINFLLT 438 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 +D ++E ++ +N+ R+ E + + IV GI Sbjct: 439 NDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 493 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 +A RL + + + ++ + GS RS + ++S ++ GGH A Sbjct: 494 SRIATRLSVYYQKVAIFLTKQG-NIIKGSIRSNNKINSKTLISIIPSHLVI-NSGGHKAA 551 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPY 502 AG T+ + + ID ++ +L +E PY Sbjct: 552 AGFTLHENLLEDFIKELEYATTKVDYETTNENESILIDAIIPKDLTKDSLFKTIEIFEPY 611 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 G P+ N LQ +++++ H+ M +SQ+ + +AI F GT E L Sbjct: 612 GYEFKEPILMMENAYLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 668 Query: 559 QSRGKRMHVTGHLCVNYW 576 + + + + +++ Sbjct: 669 IKEDQYLDIIFTVNEDFY 686 >gi|320535226|ref|ZP_08035351.1| single-stranded-DNA-specific exonuclease RecJ [Treponema phagedenis F0421] gi|320147917|gb|EFW39408.1| single-stranded-DNA-specific exonuclease RecJ [Treponema phagedenis F0421] Length = 709 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 5/207 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILT 76 W G +TQ + + A +LV R + + + +L R +P + Sbjct: 3 WN--KKDIGKELVKELTQNYGCDALTASILVRRGIINGEDILFYLENDPR-FFHNPFLFK 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + + A RI+ A EK++IFGD DVDG + ++ L ++A +P + YG Sbjct: 60 NMEDAVDRILNAKDEGEKVLIFGDRDVDGITATTVLYEALIDMGLDAQWRVPS-GDETYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + ++++F + LIITVDCG ++ + YA +GID IV+DHH + PA ++N Sbjct: 119 LSNEVIDQFAEDYGTLIITVDCGISNMAEIAYAAEKGIDTIVVDHHTPQETLPPAAVIIN 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223 D Q L + + V + Sbjct: 179 HKIADCGYPQTDLSGCATAWKLAVALR 205 Score = 169 bits (429), Expect = 8e-40, Method: Composition-based stats. Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 12/354 (3%) Query: 242 LDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYM 300 L LVAL+T+ D++ L G NR V +GL GLK L+ + + ++ +++G+ Sbjct: 358 LQLVALSTIADLMELQGENRIIVKQGLAAMSTNPREGLKELLAKQKLLGKKLSTDDIGWQ 417 Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 + P INA GR+G+ L ++D +++ A + +N+ R+ + + + AE Sbjct: 418 VSPLINATGRMGKPETAIELFLADTAEKRNEKANAIITMNEERKQLGAEGWDIAEPLARE 477 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 I V D+ H GI G+L+ RL P I DG IGS RS G+ Sbjct: 478 SLPRFSGNLAIAV-SDKIHRGITGILSNRLANTLQVPVIVICILPDGTAIGSCRSARGYH 536 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKI 479 + ++ + GGH AAG ++ + L F+ +A + T I Sbjct: 537 LLALLE--PSADLFYDYGGHNFAAGFSLAKEQLPELLHAFELYAAAMEFSEDGETEELII 594 Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA---HLQMTFESQ 536 D L + L+++ + PYG +P +F N K+ ++ + HL++T Sbjct: 595 DAELPHEYLTPKLLELADLFEPYGEKSPKLLFTASNIKILNVSALGKTEKVHLKLTL-DC 653 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + A+ + +F + G + + N + G+ Q+ + D Sbjct: 654 GTYKWPALYWNAVEKLNVDF---AVGDSVDAVFTINRNSFNGTVTPQMIIQDMK 704 >gi|312880419|ref|ZP_07740219.1| phosphoesterase RecJ domain protein [Aminomonas paucivorans DSM 12260] gi|310783710|gb|EFQ24108.1| phosphoesterase RecJ domain protein [Aminomonas paucivorans DSM 12260] Length = 565 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 137/571 (23%), Positives = 232/571 (40%), Gaps = 48/571 (8%) Query: 33 ITQKHAIPDIVARVLVNR------NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIV 86 + ++ + + +L R + + +L+P + L+ + KA + Sbjct: 22 LARRLGLSPFLVGLL--RLQDPEFGSASEGLPGWLSPDLEGLLRALPLTPSERKARE-LF 78 Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 +A+ + +++GDYDVDG S L + L + +IP R GYG + S++ Sbjct: 79 EALPPGGRAVVYGDYDVDGLTSTTLALELLLLRGASVRYFIPHRFNQGYGFHESVVRTIA 138 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG- 205 + G L++ VDCG+ +A++ A GI V + DHHQ LVNP+ S Sbjct: 139 SRGCDLLVVVDCGTKDLEAVREARRAGIPVAIFDHHQAGEVLPEDAVLVNPHAEPASSPA 198 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYV 264 LCAAGV++ R+ L LDLV LAT+ D V L LNR+ V Sbjct: 199 ARQLCAAGVLWAWASRTEAAPRE--------WLEERLDLVCLATLADCVSLKNPLNRSLV 250 Query: 265 VKGLMVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 +GL V R GL+ L+E++++ + E+L + P +NA GR+ + RLL Sbjct: 251 RRGLQVLRSAPRRGLRLLLEKLDLQAPKVDEEDLTMKVIPCLNAAGRLDLAEQAVRLLHP 310 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 D + L L LNQ RR + + A V +G+ W G++ Sbjct: 311 GDEPL-DPLVRNLVDLNQKRRFLSGQVHRDARG----------DGDHHVHQGNDWPVGVL 359 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 +A+RL + GRP ++ + G+ R EG + L GGH A Sbjct: 360 SSVASRLCSERGRPVALVAPTGT-QLRGTLRMPEGGGGDAVAVLQELSSDLAAWGGHRQA 418 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 AG VE +G++ ++ ++ + + + A+ E P+G Sbjct: 419 AGFAVEPGLWGKVRPRLEQLLRDVP---LLSEPLHVLAW-PLEALTPEAWAEAEVLRPFG 474 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK 563 GNP+P+F + S++ + + + + R E + R Sbjct: 475 MGNPSPLFLDAGGAIPSVQPLGKT----------GKVFKVLLGRCELVAFDEERLLERVI 524 Query: 564 RMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 WRG ++ +L + V+G Sbjct: 525 PQGWIYRPRQEVWRGRRQLRLYLE--RIVQG 553 >gi|15894481|ref|NP_347830.1| single-stranded-DNA-specific exonuclease (recJ) [Clostridium acetobutylicum ATCC 824] gi|15024120|gb|AAK79170.1|AE007633_14 Single-stranded-DNA-specific exonuclease (recJ) [Clostridium acetobutylicum ATCC 824] gi|325508612|gb|ADZ20248.1| Single-stranded-DNA-specific exonuclease [Clostridium acetobutylicum EA 2018] Length = 548 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 118/590 (20%), Positives = 228/590 (38%), Gaps = 67/590 (11%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +WV+L + +L NR + K FLNP +P L Sbjct: 3 KQWVNLNKKPTDLSIEN-------------ILRNRGIK--NLKHFLNPLPSDFIPL-SKL 46 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +AA I++ I ++K IF D D+DG A+ +M ++L + + N + I I + Sbjct: 47 KRIFEAAEIIIKGIKENKKFTIFYDCDLDGTAAGTIMRKYLLNFTPNVD--IAYSIGKEH 104 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + ++ I L I VD + ++ Y G++VI+ DHH + + +V Sbjct: 105 GLSSINLDNIIQNTDIL-IAVDSSTGNHKEQDYLKQNGVEVIIYDHHDEPNNQ--NVCIV 161 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV- 254 N D L AGVV+ + I +++ L+ +DL A + DV+ Sbjct: 162 NSQFED--YPNKQLSGAGVVWKGCLAIDSLMK-------TKYALNYVDLAAAGILADVMD 212 Query: 255 --PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 NR + G G ++ + + ++ + + P +NA R+ Sbjct: 213 VGESYMENRLIITMGFKHLVNVG-------LKTAIGTYDFNSTSILFSVAPLVNAAIRMR 265 Query: 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 E+ + L ++ ++ + L KL + + + + + E ++ + ++ S Sbjct: 266 ENKIAIDFLFEEEKKQSKKLLKKLKEIKEKQNKLVDISMINLEFQMKQNNSENKKVSFGF 325 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED--GKGIGSGRSIEGFDIGKMVSFAVE 430 VE + GI G++A ++ KF +P+ +S+ G D +V Sbjct: 326 VE----NKGIAGVIATKVCSKFDKPAIVLSYPNPAKDFDKYIGSLRSNIDFKTIV----N 377 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 L K GH AAG+ +++ N +L D + V K D ++ A + + Sbjct: 378 NTKLAKSQGHERAAGIEIKKENLEKLLDT----LEQKLKNKEFKKVDKFDLLIKAEFLTL 433 Query: 491 ALIDMLES---AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFR 547 LI +E G N ++ H++ F ++ + + Sbjct: 434 NLIKQIEKINRLT--GKNFQPINVVLENVVPVDFTIMIKKHIKFNFRD-----IEFVYWN 486 Query: 548 VYGTPLGEFLMQSRG--KRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 + +F G + + V G V+Y+RG ++ Q+ + D V+ + Sbjct: 487 SID-KIQDFKTTCSGLYRSLSVMGIPQVSYFRGREKKQIMIQDYKDVKDN 535 >gi|225620519|ref|YP_002721776.1| single-stranded-D-specific exonuclease RecJ [Brachyspira hyodysenteriae WA1] gi|225215338|gb|ACN84072.1| single-stranded-D-specific exonuclease RecJ [Brachyspira hyodysenteriae WA1] Length = 719 Score = 176 bits (446), Expect = 9e-42, Method: Composition-based stats. Identities = 96/376 (25%), Positives = 171/376 (45%), Gaps = 13/376 (3%) Query: 216 FLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 ++ + I+R L ++ L + LV +V DVVPLI NRAYV L + Sbjct: 348 LIIKMEIFRRLFYISQKQLQSYIKKKSILVLFGSVADVVPLIEENRAYVKCALKELEKPS 407 Query: 276 NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 + ++ER+N+ ++ I + + + + P INA GR+G +LL + +E L+ Sbjct: 408 HIRYNIILERINLLNTKIDTQAISWRLAPFINAAGRMGSPETALKLLTCEIKEEAVTLSN 467 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 ++ +N+ R+ + + + T + +IVV+ + G+ GL+A ++ ++ Sbjct: 468 EVYNMNETRKSLTESNFSIVNEYIKTNG--CLEFPIIVVKSKKIEQGLTGLIAGKVLSEY 525 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 G+ + + EDG IGS RS + M+ +A L K GGH AAG T+ NF Sbjct: 526 GKTAVIMHESEDGICIGSIRSRGDDNARDMLEYANIY--LTKFGGHKNAAGFTLNTDNFD 583 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 + K+A + D ++ ++I +LE PYG GN P+F Sbjct: 584 KFQSKIIKYASSQNFQTEKKDDV-FDLEISFKDIDIKFARLLEMFEPYGFGNEEPLFMSK 642 Query: 515 NHKLQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHL 571 N K+ SI + HL++ QD++ + AI + + L + + + L Sbjct: 643 NVKVNSINKMKKNNKTHLRLEL-LQDNKKVNAIMWDKSDEEAQKLLSSN---YIDIIYKL 698 Query: 572 CVNYWRGSKRCQLRVL 587 VN + GS+ ++ V Sbjct: 699 KVNRFNGSEDARIYVE 714 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 3/186 (1%) Query: 38 AIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 + + +L R ++ + DF I L +P + D + R+ +AI N EKI+ Sbjct: 5 NLNTTILELLKLRGITSKEDIYDFFFQDIYSL-SNPFNIRDINVFVDRVKEAIDNDEKIL 63 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 ++GD D DG + +++ L + N ++P+ GYG + +++E++ N G LIITV Sbjct: 64 VYGDKDADGITAASIIYNTLKVVTKNVEAFVPN-HTTGYGLSKAVIEEYANSGVSLIITV 122 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 DCG ++ + +++A + ID+IV DHH + AYA+ NP + + V F Sbjct: 123 DCGISNAEEVEFARDLSIDIIVTDHHDIPEILPNAYAVFNPKISNTGFVSKNFSGCAVAF 182 Query: 217 LVLVLI 222 ++ Sbjct: 183 KLMQAF 188 >gi|224534230|ref|ZP_03674808.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia spielmanii A14S] gi|224514332|gb|EEF84648.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia spielmanii A14S] Length = 708 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W + I +++ + A +L+ R + + FL S+ L+ +P +L Sbjct: 2 KIWKQKELNIQAHELNRIVKQYNVNPFEATLLLKREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + +K RI +AI +E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNINKFINRINKAIKENENILIFGDKDADGITATIIMYETLKDFGLNVSYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH + ++ Sbjct: 120 GLSTELINIALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGEDFKTESIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKTCLAL 206 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 82/431 (19%), Positives = 163/431 (37%), Gaps = 18/431 (4%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + L + I++ ID + +++ P + L + Sbjct: 269 YIIIFNKEDQNQLLNKHFARNININTIDISENFTKKYPNFRKKTLKDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y I+ + NK L L L+ VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNIIFETNKNLLQKCLKR-LNFVAIGTIADNMPIINENRIILKAGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ I IT+ ++ Y I P +N+ GR+ ++N+ L++ D ++E Sbjct: 388 LRERMSINYLLKDAGILTKPNITSIDIAYKIAPILNSTGRLEKANIAINFLLTSDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ +N+ R+ E + + IV GI +A RL Sbjct: 448 NKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGISSRIATRL 502 Query: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 + + + ++ + GS RS + ++S ++ GGH AAG T+ Sbjct: 503 SVYYQKVAIFLTKQG-NIIKGSIRSNNKINSKTLISIVPSHLVI-NSGGHKAAAGFTLHE 560 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPV-FKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + + ID ++ +L +E PYG Sbjct: 561 NLLEDFIKELEYATTKVEYETTNENESILIDAIIPKDLTKDSLFKTIEIFEPYGYEFKEL 620 Query: 510 VFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 V N LQ +++++ H+ M +SQ+ + +AI F GT E L + + Sbjct: 621 VLMMKNVFLQELKIIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELNIKEDQYL 677 Query: 566 HVTGHLCVNYW 576 + + +++ Sbjct: 678 DIIFTVNEDFY 688 >gi|4102237|gb|AAD09318.1| p55-L5 [Borrelia burgdorferi N40] Length = 476 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 2/207 (0%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W I +++ I A +L+NR + + FL S+ L+ +P +L Sbjct: 2 KIWKQKETNIQTQELTRIAKQYNINAFEATLLINREIKEEDFMFFLEDSV-NLLHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI N+E I+IFGD D DG + +M L +N + IP Y Sbjct: 61 KNIDKFINRINKAIKNNENILIFGDKDADGIXATIIMYETLKDFGLNVSYXIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + L+ + + LIITVD G +S + + YA ++GI++I+ DHH ++ Sbjct: 120 GLSNELINTALEKKISLIITVDNGISSIEEINYANSKGIEIIITDHHLPGENFKTENIVI 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 NP+ DD + V F + + Sbjct: 180 NPHLKDDKYPFKEIAGCCVSFKACLAL 206 Score = 57.5 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 3/202 (1%) Query: 153 IITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 I + + L + I++ ID + ++ P + L + Sbjct: 269 CIIIFNKEDQNELLNKHFAKSININTIDISENFIKKYPNFIKKTLTDLIQATKYFKYKEV 328 Query: 213 GVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 + + + Y ++ + NK L L L VA+ T+ D +P+I NR + GL Sbjct: 329 EIKDKLYYIFYNVIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILKVGLKEIA 387 Query: 273 RQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L+++D ++E Sbjct: 388 LRERMSINYLLKDANILTKPNITSADIAYKIAPILNSTGRLEKADIAINFLLTNDINQIE 447 Query: 331 MLAMKLDVLNQNRRLMESAMLE 352 ++ +N+ R+ E Sbjct: 448 NKFKEIKEINELRKYKEEKAWN 469 >gi|269468992|gb|EEZ80563.1| single-stranded DNA-specific exonuclease [uncultured SUP05 cluster bacterium] Length = 267 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 15/279 (5%) Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 +++DD + A +L+ NQ R+ ++ + ++A+A V Q + + + WH Sbjct: 1 MLTDDINDARRYAKELEEFNQKRKQEQTRIQDEAQAIVDAQDV-TEGKFALSLFDPSWHE 59 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA--VEEGILVKGG 438 GIVG++A +LKE + P + D GS RSI I ++ G+++K G Sbjct: 60 GIVGIVAGKLKEDYHCPVAVFAKSGD-FLKGSIRSIPSVHIKDLLDLVDRHNPGLILKFG 118 Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 GHAMAAGL+++ +F F + + DG L A +++ ++++ Sbjct: 119 GHAMAAGLSIKAEDFYSFKRVFHDAIKAHLNGEMPKMELLTDGKLEAFDISLNNAEIIKE 178 Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFL 557 AGP+G G P+F ++ +VV HL+ + +++ AIAF F Sbjct: 179 AGPWGQGFEEPIFYGE-FEIVEQKVVGEKHLKCRLKLVGNNQVHDAIAF---------FQ 228 Query: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHH 596 K+ V L +N WRG+ QL V + + +H Sbjct: 229 DPLDTKKATVVYKLSLNIWRGNISLQLMVEQITSLTQNH 267 >gi|323650983|ref|YP_004243626.1| putative single-stranded-DNA-specific exonuclease [Bacillus subtilis subsp. natto] gi|323461623|dbj|BAJ77039.1| putative single-stranded-DNA-specific exonuclease [Bacillus subtilis subsp. natto] Length = 583 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 120/601 (19%), Positives = 238/601 (39%), Gaps = 65/601 (10%) Query: 29 RALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 + I+ + DI+ +L NRN+ FLNP+ + +P L + + A ++ Sbjct: 2 KIKQISSYNG--DIIDTILKNRNIK--DIDTFLNPNSSEDL-NPFDLHNIELGANVLLAH 56 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDRIVDGYGPNPSLMEKFI 146 + ++ I I D D DG +S +++ +++ + + ++ DR +G + +K Sbjct: 57 LLINDHIGILVDADADGFSSASIIYQYIKKIEPDSHVSYFLHDR--KAHGLTDEISQKIA 114 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 + LII D S D LQ GID+IV+DHH+V L+N ++ S Sbjct: 115 DSSIDLIIIPDAASNDVDELQRLYYMGIDIIVLDHHEVDKMPTHG-ILINNQLDENKSTN 173 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN-RAYVV 265 +L AG+ + + RIL LLDLVA+ + D + R V Sbjct: 174 KNLVGAGMAYKFCQALDRIL-------DTHYADDLLDLVAIGQIGDTSDISENEVRNLVF 226 Query: 266 KGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS-- 323 +GL A+++ I ++L + I P INA R+G + L + Sbjct: 227 RGLETINNP--LVKVAVMDVFGSLEGIAPKDLSFSIIPMINAVVRVGTEDEKDLLFRALN 284 Query: 324 ----------------------DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 D + L + + + +++M++++ K+ + Sbjct: 285 KIGDGRVWNVEKRKKNKKTGKFDKILVEQDLYEYAFDMMKKVKGRQNSMIKKSLEKLRSS 344 Query: 362 CDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDI 421 + S+ +++ I GL+A ++ +K+ +P+ + +++ K IGSGR E + Sbjct: 345 TYNEGGISIALLDSSDE-AAITGLVANKVAKKYQKPALVLYYKDK-KYIGSGRGDEKV-L 401 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDG 481 + + E G++ GHA A G+++ NF + V+++D Sbjct: 402 SSLKDWCNETGLVEFAQGHANAFGISIPEDNFEEFKKRTHEV-------EQNEFVYEVDL 454 Query: 482 VLNASAVNIALIDML---ESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS 538 ++ V+ +LI+ + + +G P+ AF K+ + + +TF Sbjct: 455 IVK-ENVDRSLIEDVTDNKHL--FGGKVQEPLLAFVGIKI-NKNFIRQKGSMLTFYENG- 509 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGK-RMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 ++ + + + M G VN + + QL ++D E + Sbjct: 510 --VEFVMYGAPEGLYESLKNNFDRQITMDFVGTPSVNVYGNKRTLQLVLVDCERNESGQY 567 Query: 598 A 598 Sbjct: 568 D 568 >gi|302338649|ref|YP_003803855.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta smaragdinae DSM 11293] gi|301635834|gb|ADK81261.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta smaragdinae DSM 11293] Length = 706 Score = 173 bits (439), Expect = 6e-41, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 166/356 (46%), Gaps = 12/356 (3%) Query: 239 LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENL 297 S+LDLVAL T+ D++PL NR V +G+ + G++ L+ R N+ ++ ++ Sbjct: 355 ESILDLVALGTLADMMPLEDENRILVKRGMKLLSEARRGGIQELLVRQNLLGKRLSTTDV 414 Query: 298 GYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 G+ I P INA GR+G + LL+ D+ + LA ++ LN+ R+ + + + Sbjct: 415 GWQISPIINATGRLGVPEKAADLLLETDAMKRAALADEVVSLNRKRKKLGESAWKTVVPL 474 Query: 358 VLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE 417 + + +VE +H GI G+LA+RL + FG PS I+ + +GS RS++ Sbjct: 475 AKKSLTQYGERFI-LVEDKSFHRGITGILASRLVQSFGVPSAVIAHLDTHL-VGSIRSVK 532 Query: 418 GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVF 477 G + + +L+ GGH +AAG ++ NF F + + Sbjct: 533 GINAKTFLES--FSDLLLDFGGHDLAAGFSLTFENFPSFLQRFAEMVERMEVPQNEEEAI 590 Query: 478 KIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL---AHLQMTFE 534 +ID L S + L D++E PYG +P VF +L I ++ HL++ Sbjct: 591 QIDAELPPSYMKPELCDIVERFEPYGEKSPPLVFMAKRVRLAEISLIGKPDPIHLKL-LV 649 Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 S A+ +R +F +G ++ + L NY++ ++ QL +LD Sbjct: 650 DSGSFKWPAVFWRSADRVGVDF---QQGDQVDILFRLGRNYFQNREQPQLTILDVR 702 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 3/205 (1%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTD 77 + +++++ I ++A ++ R V S D K + + +P + + Sbjct: 2 IWKKSDIDPEVVRDLSRQYGIDLLIASIMARRGVLSPDDVKFHIEEELS-FTHNPFLFDE 60 Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 + R+ A+ EK+ IFGD DVDG S LM + L + + +P + D YG Sbjct: 61 MTEVVDRLFLALDEGEKLRIFGDRDVDGITSTVLMKQQLEGMGLEVSWSLP-KGDDPYGL 119 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 L++ L+ITVDCG ++Y + YA +GID ++IDHH E A A++NP Sbjct: 120 TMELIDLMERNEETLLITVDCGISNYREIAYAREKGIDTLIIDHHNPSDELPCALAIINP 179 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLI 222 D L A GVV V+ + Sbjct: 180 KIADCGYPFSGLAAVGVVSKVIWAL 204 >gi|255019534|ref|ZP_05291626.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus caldus ATCC 51756] gi|254971032|gb|EET28502.1| Single-stranded-DNA-specific exonuclease recJ [Acidithiobacillus caldus ATCC 51756] Length = 278 Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 128/275 (46%), Gaps = 12/275 (4%) Query: 19 VSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDC 78 L Q A+T I ++AR+ R V+ L+ + L L D Sbjct: 2 RIQLRQAEHEPVTALTSA-GIDPVLARIYSARGVAGPDD---LDLGLAGLASY-TQLKDI 56 Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYGP 137 D+AA+R+ AI N+EK+ I GD+D DGAA +L++ + +++IP+R+ GYG Sbjct: 57 DQAAKRLAIAIKNAEKLAIAGDFDSDGAAGASLLIEGILDLGGRLPSLFIPNRMTQGYGL 116 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE-EIPAYALVN 196 +P L+ + L+ITVD G S + A +G DVI+ DHH A+VN Sbjct: 117 SPGLVAEMPA-DTNLVITVDNGIASIAGVAAARARGFDVIITDHHLAGERLPEDCAAIVN 175 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV---PLNFDLLSLLDLVALATVCDV 253 PN+ GV F ++ LR+D +L LDLVALAT+ DV Sbjct: 176 PNQPGCAFPWKGTAGVGVAFYLIAATRAKLREDEWFGDHRPEPNLSKYLDLVALATIADV 235 Query: 254 VPLIGLNRAYVVKGLMV-ARRQGNPGLKALIERVN 287 P NR ++ GL +R+ G+ AL+E Sbjct: 236 APFERNNRIFIAAGLERIRQRRCRIGILALLEVAG 270 >gi|167933078|ref|ZP_02520165.1| hypothetical protein cdivTM7_00529 [candidate division TM7 single-cell isolate TM7b] Length = 361 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 174/319 (54%), Gaps = 10/319 (3%) Query: 104 DGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 DG ++ AL++ + +IP+R V+GYG ++K + A LIITVDCGS Sbjct: 1 DGISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIITVDCGSLC 60 Query: 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 ++ + YA + GID +V DHH V PA A VNP L L GV F ++ + Sbjct: 61 HNEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVAFKLVQAL 120 Query: 223 YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 + L + + LLDLVAL TVCD+V L G NRA V G+ V ++Q GLKAL Sbjct: 121 QKELDGLPEGYEKW----LLDLVALGTVCDIVKLTGENRANVYWGIEVMKKQRRTGLKAL 176 Query: 283 IERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 + NI I+A+ LG++ GP INA GR+ ++L +LIS + + A +D LN Sbjct: 177 MAVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGDDALNKANYIDNLNS 236 Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401 +RR M+ + ++A D + V+V+ G W+ GI+G++AA++ EKF +P + + Sbjct: 237 HRRQMQDDIFKEA----CKIALDYKDDDVLVINGKNWNHGIIGIVAAKILEKFKKPVYIL 292 Query: 402 SFEEDGKGIGSGRSIEGFD 420 + ++G+ GS RS F Sbjct: 293 AENDNGETKGSARSFGDFS 311 >gi|158834157|gb|ABW81883.1| 5'-3' exonuclease [Candidatus Regiella insecticola] Length = 281 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 144/281 (51%), Gaps = 8/281 (2%) Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 A S AL + L + +P+R +GYG +P ++E+ + A LI+TVD G +S+ Sbjct: 1 ATSTALAVLALRSMGAKDVKYLVPNRFEEGYGLSPMIVERVARQNAALIVTVDNGISSHA 60 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 ++ A +GI V+V DHH A A++NPN L GV F +++ + Sbjct: 61 GVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLMLALRA 120 Query: 225 ILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQGNPGL 279 L+ + +L LLDLVAL TV DVVPL NR V +GL + ++ PG+ Sbjct: 121 RLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILVHQGLSRIRAKRCRPGI 180 Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 +AL++ + A +LG+ +GP +NA GR+ + ++G LL+SDD +LA +L+ Sbjct: 181 QALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILAEELNT 240 Query: 339 LNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRW 378 LNQ RR +E M +A A + D I + +W Sbjct: 241 LNQERREIEQGMQLEALALCNALEDPDHILPYGIAMYHKKW 281 >gi|203284175|ref|YP_002221915.1| single-stranded-DNA-specific exonuclease [Borrelia duttonii Ly] gi|201083618|gb|ACH93209.1| single-stranded-DNA-specific exonuclease [Borrelia duttonii Ly] Length = 718 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 9/279 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W + I +K+ I A +L++R + + FL S+ LM +P L Sbjct: 16 KIWKKKEIDIAEKNIVNIKKKYNISLFEATLLLSREIKEEDFLFFLESSV-NLMHNPFFL 74 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK RI +AI E ++IFGD D DG + +M L +N IP Y Sbjct: 75 KNIDKFIYRINEAILEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF-Y 133 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G +++K N+ LIITVDCG ++ + + YA ++ I+VI+ DHH E ++ Sbjct: 134 GLTKEVIDKAFNDKITLIITVDCGISNIEEINYARSKNIEVIITDHHLPNKEIDTENIII 193 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIY----RILRQDNKVPLNFDLLSLLDLVALATVC 251 +P+ DL + V F + +Y +D + + L A+ Sbjct: 194 DPHLKGDLYPFKEIAGCYVSFKACLALYLSTTNFYNKDLIFMFLEKFENNIKLHAIEINN 253 Query: 252 ---DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287 + N + + N + + Sbjct: 254 YILKKHITLDNNNDLQININQIEEFSQNKHIIVFNKIEQ 292 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 159/379 (41%), Gaps = 18/379 (4%) Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + + Y I+ + NK L L L VA+ T+ D +P+I NR V +GL + N Sbjct: 347 KLYYMFYNIIFETNKNLLQNCLKR-LKFVAIGTIADNMPIIDENRIAVKEGLKEIALREN 405 Query: 277 PGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 + L++ VNI IT+ ++ + I P +N+ GR+ ++++ R L+S D+ ++E Sbjct: 406 ISINYLLKEVNILTKPIITSTDIAFKIAPILNSTGRLEKADITIRFLLSQDTNKIENKFK 465 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 ++ +N R+ E + + IV GI +A RL + Sbjct: 466 EIKNINTLRKYKED-----ISWNTHNENTIFKNDKFIVCYDKNTPKGISSRMATRLSSYY 520 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 + + ++ + D GS RS + +++S + + +++ GGH AAG T+ Sbjct: 521 KKVAVFLTKQSD-IIKGSIRSNNKVNSKELISM-IPKHLIINSGGHKAAAGFTLYENVLN 578 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 + I + ID ++ LI ++ PYG + Sbjct: 579 EFIRELENALKKIEYKELQEDSILIDAIIPQDLSKTELIKTIDLFEPYGHDFREFILMME 638 Query: 515 NHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 N +Q IR ++ H+ M + + + +AI F GT + L G+ + + Sbjct: 639 NVCIQDIRTIDKNGTSKHISMKIIN-NIDYYKAIYFN--GTQTIQELGIKDGQNIDIIFT 695 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + + + + + L+++D Sbjct: 696 ISEDIYNQNDKI-LKIIDI 713 >gi|187918128|ref|YP_001883691.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia hermsii DAH] gi|119860976|gb|AAX16771.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia hermsii DAH] Length = 704 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 128/339 (37%), Gaps = 10/339 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W + I +K+ I + A +L+ R + + F+ S+ LM +P +L Sbjct: 2 KIWKKKEIDIPKENVVNIAKKYNISLLEATLLLRREIKEEDFLFFIESSV-NLMHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + DK R+ +AI E ++IFGD D DG + +M L +N IP Y Sbjct: 61 KNIDKFTYRMNEAIAEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G +++K + +IITVDCG ++ + YA ++ I+VI+ DHH E ++ Sbjct: 120 GLTKEIIDKAFEDKISIIITVDCGISNIEEANYARSKNIEVIITDHHLPNKEIDIENIII 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P+ D S + V F + +Y + L + L L L + Sbjct: 180 DPHLKGDPSPFKEIAGCYVSFKACLALY-----LSTTNLYNKNMVFLFLERLNNNITLHA 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSINAGGRIGE 313 + N + + + + L E I ++ N I Sbjct: 235 IEINNYMFKKYIALESNNDLQININKLEEFSKSKYVIVFNKNEQNQLLNEFFNYKIDIET 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE 352 ++ + + + +L + + + ++ E Sbjct: 295 IDISENFV-KKYPKFAKKTLKELMQITKYCKYRKTDTKE 332 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 94/482 (19%), Positives = 192/482 (39%), Gaps = 26/482 (5%) Query: 111 LMMRFLSHCSVNANMY---IPDRIVDGYGPNPSLMEKFIN------EGAQLIITVDCGST 161 ++ FL + N ++ I + + Y S + IN + V + Sbjct: 218 MVFLFLERLNNNITLHAIEINNYMFKKYIALESNNDLQININKLEEFSKSKYVIVFNKNE 277 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 L N ID+ ID + ++ P +A L ++ + + Sbjct: 278 QNQLLNEFFNYKIDIETIDISENFVKKYPKFAKKTLKELMQITKYCKYRKTDTKEKLYYV 337 Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281 Y I+ + NK L L L VA+ T+ D +P+I NR V +GL + N + Sbjct: 338 FYNIIFEVNKDLLKNCLKR-LKFVAIGTIADNMPIINENRIVVKEGLKEIALRENISINY 396 Query: 282 LIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339 L++ VNI IT+ ++ + + P +N+ GR+ ++++ + L+++D+ ++E ++ + Sbjct: 397 LLKEVNILTKPIITSTDIAFKVAPILNSTGRLEKADITIQFLLAEDTNQIENKFKEIKNI 456 Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 N R+ E A + + IV + GI +A RL + + + Sbjct: 457 NTLRKRKEE-----ASWIAHDENTIFKNDKFIVCYDKQTPKGISSRMATRLSAYYQKVAV 511 Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 ++ +E GS RS + +++S + +++ GGH AAG T+ Sbjct: 512 FLTKQE-NIIKGSIRSNNKVNSKELISM-IPSHLIINSGGHKAAAGFTLYEAVLNEFIKE 569 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 + I I ID ++ L+ +++ PYG G + + +Q Sbjct: 570 LENALDKIEYKEIHEDSILIDAIIPKDFNKRELLKIIDLFEPYGHGFREFILMMEDIYIQ 629 Query: 520 SIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 +R ++ H+ M ++ + + +AI F GT + L G+ + + + + Sbjct: 630 DLRTIDKNGTSKHISMKIKN-NKDYYRAIYFN--GTQKIQELGIKDGQNIDIIFTVGEDL 686 Query: 576 WR 577 + Sbjct: 687 YN 688 >gi|158834159|gb|ABW81884.1| 5'-3' exonuclease [Candidatus Regiella insecticola] Length = 269 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 7/262 (2%) Query: 106 AASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 A S AL + L + +P+R +GYG +P ++E+ + A LI+TVD G +S+ Sbjct: 1 ATSTALAVLALRSMGAKDVKYLVPNRFEEGYGLSPMIVERVARQNAALIVTVDNGISSHA 60 Query: 165 ALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 ++ A +GI V+V DHH A A++NPN L GV F +++ + Sbjct: 61 GVELAHQKGIRVLVTDHHLPGETLPNADAIINPNLKHCCFPSKSLAGVGVTFYLMLALRA 120 Query: 225 ILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL-MVARRQGNPGL 279 L+ + +L LLDLVAL TV DVVPL NR V +GL + ++ PG+ Sbjct: 121 RLKNEGWFAVKTLPIPNLAELLDLVALGTVADVVPLDSNNRILVHQGLSRIRAKRCRPGI 180 Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 +AL++ + A +LG+ +GP +NA GR+ + ++G LL+SDD +LA +L+ Sbjct: 181 QALLDVAKRDAKNLVASDLGFFLGPRLNAAGRLDDMSIGVELLLSDDPLAARILAEELNT 240 Query: 339 LNQNRRLMESAMLEQAEAKVLT 360 LNQ RR +E M A A Sbjct: 241 LNQERREIEQGMQXXALALCNA 262 >gi|203287711|ref|YP_002222726.1| single-stranded-DNA-specific exonuclease [Borrelia recurrentis A1] gi|201084931|gb|ACH94505.1| single-stranded-DNA-specific exonuclease [Borrelia recurrentis A1] Length = 719 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 10/280 (3%) Query: 16 FRWVSL-LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74 W + I +K+ I AR+L++R + + FL S+ LM +P Sbjct: 16 KIWKKKKEIDIAEENIVNIKKKYNISLFEARLLLSREIKEEDFLFFLESSV-NLMHNPFF 74 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + DK RI +AI E ++IFGD D DG + +M L +N IP Sbjct: 75 LKNIDKFIYRINEAILEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF- 133 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 YG +++K ++ LIITVDCG ++ + + YA ++ I+VI+ DHH E + Sbjct: 134 YGLTKEVIDKAFDDKITLIITVDCGISNIEEINYARSKNIEVIITDHHLPNKEIDTENII 193 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIY----RILRQDNKVPLNFDLLSLLDLVALATV 250 ++P+ DL + V F + +Y +D + + L A+ Sbjct: 194 IDPHLKGDLYPFKEIAGCYVSFKACLALYLSTTNFYNKDLIFMFLEKFENNIKLHAIEIN 253 Query: 251 C---DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN 287 + N + + N + + Sbjct: 254 NYILKKHITLDNNNDLQININQIEEFSQNKHIIVFNKIEQ 293 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 159/379 (41%), Gaps = 18/379 (4%) Query: 217 LVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + + Y I+ + NK L L L VA+ T+ D +P+I NR V +GL + N Sbjct: 348 KLYYMFYNIIFETNKNLLQNCLKR-LKFVAIGTIADNMPIIDENRIAVKEGLKEIALREN 406 Query: 277 PGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 + L++ VNI IT+ ++ + I P +N+ GR+ ++++ R L+S D+ ++E Sbjct: 407 ISINYLLKEVNILTKPIITSTDIAFKIAPILNSTGRLEKADITIRFLLSQDTNKIENKFK 466 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 ++ +N R+ E + + IV GI +A RL + Sbjct: 467 EIKNINTLRKYKED-----ISWNTHNENTIFKNDKFIVCYDKNTPKGISSRMATRLSSYY 521 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 + + ++ + D GS RS + +++S + + +++ GGH AAG T+ Sbjct: 522 KKVAVFLTKQSD-IIKGSIRSNNKVNSKELISM-IPKHLIINSGGHKAAAGFTLYENVLN 579 Query: 455 RLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP 514 + I + ID ++ LI ++ PYG + Sbjct: 580 EFIRELENALKKIEYKELQEDSILIDAIIPQDLSKTELIKTIDLFEPYGHDFREFILMME 639 Query: 515 NHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 N +Q IR ++ H+ M + + + +AI F GT + L G+ + + Sbjct: 640 NVCIQDIRTIDKNGTSKHISMKIIN-NIDYYKAIYFN--GTQTIQELGIKDGQNIDIIFT 696 Query: 571 LCVNYWRGSKRCQLRVLDA 589 + + + + + L+++D Sbjct: 697 ISEDIYNQNDKI-LKIIDI 714 >gi|330836367|ref|YP_004411008.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta coccoides DSM 17374] gi|329748270|gb|AEC01626.1| single-stranded-DNA-specific exonuclease RecJ [Spirochaeta coccoides DSM 17374] Length = 708 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 129/550 (23%), Positives = 224/550 (40%), Gaps = 35/550 (6%) Query: 57 AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIY-------NSEKIMIFGDYDVDGAASV 109 A +NP + L C AA+ I A+ E I++ D Sbjct: 173 AMAIINPKLEGSGYPFSHLAGCGVAAKCIW-ALRFSYTDFFREECILLHAQPGND----- 226 Query: 110 ALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYA 169 +++R L ++ + I + +V G P A + I V L+ A Sbjct: 227 TVIIRALRLRNMIVDDRISEEVVPGM-LPPEKSRLLQFLSAGVPILVLDEEEETSQLRKA 285 Query: 170 TNQGIDVIVIDHHQV-----KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR 224 +G+D+ + Q + + G ++++ + Sbjct: 286 FGRGVDIHCVSMRQEMEKVLPQIRGKSIFALTSISRGARYGLLGRDELDALYMLFMAFVM 345 Query: 225 ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIE 284 + L+ D SLLDLVA+ T+ D++P+I NR V +GL V + L+ L+ Sbjct: 346 H----KEPLLSEDYDSLLDLVAIGTIADLMPMIDENRILVRRGLSVLKSSRRKALQPLMA 401 Query: 285 RVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 N I ++ ++ + + P INA GR+GE ++ +L+S D+ E E LA +L LN+ R Sbjct: 402 MQNLIGRSLSTTDISWNLTPLINAAGRMGEPSIAVEMLLSKDAHESERLAGELVQLNKKR 461 Query: 344 RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 + M + + E K + ++VE G+ G++A+RL +F PS I+ Sbjct: 462 QKMGEDVWVRLEPKAKA-SKESHGGKFLMVEDPSISRGLTGIMASRLLRQFSIPSLVIAK 520 Query: 404 EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 +D + GS RS + F + + E + + GGHA A G ++E N D Sbjct: 521 TDDHRVTGSMRSPDDFHVRDF--LSQFEDLFLDYGGHARAGGFSMETDNLSGFKDRLMDV 578 Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 + +ID L A + ++ ++E PYG NP F + I Sbjct: 579 VERMDGVDEHGESIRIDCSLPARFMTPDIMKVVEFFEPYGEQNPPIHFMIEGAIISDISS 638 Query: 524 VNLA----HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 +N HL+++ S T A+ ++ EF + G ++V L NY+R + Sbjct: 639 MNNRQGSDHLRLSVSY-GSHTWPAVYWQAADKLDREFSL---GDSVNVVFRLGRNYFRNT 694 Query: 580 KRCQLRVLDA 589 + QL V+D Sbjct: 695 EIVQLTVMDI 704 Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 5/207 (2%) Query: 18 WVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLILT 76 W + + ++ + I A +L R + K FL + + +P Sbjct: 3 WE--KKRVSTETVGKLHERLGLDVITASILARRGIEEVQDVKFFLENEL-TFLHNPFHFD 59 Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D + R+ QA+ + EK+ IFGD DVDG L+ + ++A+ +P+ + YG Sbjct: 60 DMEVFVERMQQAVEDKEKVRIFGDRDVDGITGTVLLHQEFERLGLDASYKLPE-GDEPYG 118 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + ++ +G L++TVDCG ++ D + YA+ G+D +V+DHH PA A++N Sbjct: 119 LTMAGVDAAHADGVTLLVTVDCGISNNDEIAYASTLGLDTLVLDHHLGGDVLPPAMAIIN 178 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIY 223 P HL GV + + Sbjct: 179 PKLEGSGYPFSHLAGCGVAAKCIWALR 205 >gi|330874871|gb|EGH09020.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 248 Score = 169 bits (429), Expect = 9e-40, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 5/199 (2%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ ++++I Sbjct: 46 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALREGQRMLI 101 Query: 98 FGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 GD+D DGA + + + L + + +P+R GYG P ++E + QL+ITV Sbjct: 102 VGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQREPQLLITV 161 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 D G +S + + A G+ V+V DHH E A A+VNPN+ L GV+F Sbjct: 162 DNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTFPSKSLAGVGVIF 221 Query: 217 LVLVLIYRILRQDNKVPLN 235 VL+ + LR N Sbjct: 222 YVLMALRARLRDTGWFESN 240 >gi|302874947|ref|YP_003843580.1| phosphoesterase RecJ domain-containing protein [Clostridium cellulovorans 743B] gi|307690435|ref|ZP_07632881.1| phosphoesterase RecJ domain-containing protein [Clostridium cellulovorans 743B] gi|302577804|gb|ADL51816.1| phosphoesterase RecJ domain protein [Clostridium cellulovorans 743B] Length = 292 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 11/281 (3%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P ++ + DKA R+V AI N EKI+I+G YDVDG SV++++ L + + +IP+ Sbjct: 20 NPFLMKNVDKALERVVAAINNQEKIVIYGYYDVDGITSVSMLLLMLRYLKADVEYFIPET 79 Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 +++ I GA LI+T+ CG SY+ ++ GIDV++ID+ + + Sbjct: 80 ANANREIQYEVVKNHIKFLGADLILTIGCGINSYNQVELCKELGIDVVIIDNRSI-ENIV 138 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 P +N + D L AG+ + + + + LDL L T Sbjct: 139 PKTITINTKQKDCSYPFKDLSGAGMAYKFIEAV-------GIFYQIKSITKYLDLCMLGT 191 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPIT--AENLGYMIGPSINA 307 + VPL+ N+ V G+ N G+ ALIE N+ S A L + + P INA Sbjct: 192 ISSDVPLLDENKTLVELGISHLCDTKNHGINALIEENNVYSINEAAAYKLAFTVIPRINA 251 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMES 348 GR+ + + L +DD + +A L + + Sbjct: 252 IGRMDNARIVVELFTTDDKYRAKQIAKYLIKEVNLNKNIIK 292 >gi|148543893|ref|YP_001271263.1| phosphoesterase domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184153293|ref|YP_001841634.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus reuteri JCM 1112] gi|227364801|ref|ZP_03848849.1| phosphoesterase domain protein [Lactobacillus reuteri MM2-3] gi|325682574|ref|ZP_08162091.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri MM4-1A] gi|148530927|gb|ABQ82926.1| phosphoesterase, RecJ domain protein [Lactobacillus reuteri DSM 20016] gi|183224637|dbj|BAG25154.1| single-strand DNA-specific exonuclease RecJ [Lactobacillus reuteri JCM 1112] gi|227070145|gb|EEI08520.1| phosphoesterase domain protein [Lactobacillus reuteri MM2-3] gi|324978413|gb|EGC15363.1| single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri MM4-1A] Length = 155 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLI 74 F+W + ++ I I+A +L + + + AK F PS+ + DP + Sbjct: 6 FKWKL-ADNASSATVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIH-DPTL 63 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D DKA RI QA+ E+I I+GDYD DG S +LM L N N Y+P+R DG Sbjct: 64 LHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRFTDG 123 Query: 135 YGPNPSLMEKFINEGAQLI 153 YGPN ++ A + Sbjct: 124 YGPNMDAYQRLWAYLATFL 142 >gi|255024154|ref|ZP_05296140.1| single-stranded-DNA-specific exonuclease (RecJ) [Listeria monocytogenes FSL J1-208] Length = 300 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 101/314 (32%), Positives = 164/314 (52%), Gaps = 16/314 (5%) Query: 104 DGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 DG S+A++M+ L H NA YIP+R +GYGPN + + N+G LIITVD G + Sbjct: 1 DGVTSIAVLMKTLRHLGANAEFYIPNRFTEGYGPNIAAFDMAKNQGTDLIITVDNGIAAL 60 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 + + +A G+DVIV DHH+ + A A+++P L GV + + + Sbjct: 61 EVMTHAKEIGLDVIVTDHHEPREVMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHAL- 119 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 L ++ LLDLVA+ TV D+V L NR V GL R N GL L Sbjct: 120 --LGEEP--------KELLDLVAVGTVADLVSLTDENRLLVQLGLRQLRESANLGLSVLA 169 Query: 284 ERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 ++ ++ T E +G+ + P +NA GR+G ++ + LL+++D +E LA ++D N+ Sbjct: 170 KKASLKLEEATEETIGFGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKE 229 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ + + A + + +V+VV G+ W+ GI+G++A++L + RP+ + Sbjct: 230 RKQIVVDTTKLAMEAIEAKET---LGNVLVVYGEGWNTGILGIVASKLVGTYSRPAIVLG 286 Query: 403 FEE-DGKGIGSGRS 415 + G GSGRS Sbjct: 287 IDPVTGIAKGSGRS 300 >gi|28211808|ref|NP_782752.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani E88] gi|28204250|gb|AAO36689.1| single-stranded-DNA-specific exonuclease recJ [Clostridium tetani E88] Length = 281 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 11/266 (4%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 + DP ++ D+A +RI++A+ EKI+++G YD+DG A+V+++ L + + + +I Sbjct: 7 LHDPFLMKGMDEALKRIIKAVNKREKIVVYGCYDLDGIAAVSVLFLVLKYLNADVEYFIS 66 Query: 129 DRIVDGYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 D D + N +++ G L+IT CGS SYD ++ GIDVI+ D+H+ + E Sbjct: 67 DGCKDNFEINSDIVKNHVKFLGTNLMITAGCGSNSYDQIELCKKLGIDVIITDYHKCRDE 126 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 +P ++NPN+ D L ++GVV+ ++ I + LDL+ L Sbjct: 127 -VPNTLMINPNQKDCTYPFKELTSSGVVYKLVQAIS-------CYYQMKCVHKYLDLIML 178 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSI 305 P +G N+ V +GL N GLKAL + + + PS Sbjct: 179 GVSSTKPPYVGENKFIVEQGLYHINFTNNYGLKALAKVNKEKKITFKNINMILEDLMPSS 238 Query: 306 NAGGRIGESNLGSRLLISDDSQELEM 331 N+ + S + L + + E Sbjct: 239 NSPRVLDNSRITVELFTTSNIDRAEQ 264 >gi|119953053|ref|YP_945262.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia turicatae 91E135] gi|119861824|gb|AAX17592.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia turicatae 91E135] Length = 704 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 162/473 (34%), Gaps = 17/473 (3%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 W + I +K+ I + A +L+ R + + F+ S+ LM +P +L Sbjct: 2 KIWEKKEIDIKKENIINIAKKYNISILEATLLLRREIKEEDFLFFIESSV-NLMHNPFLL 60 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + +K R+ +AI E ++IFGD D DG + +M L +N IP Y Sbjct: 61 KNINKFIYRMNEAIAEKENVLIFGDKDADGITATIIMYETLKDFGINVTYKIPSNGEF-Y 119 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G +++K + + +IITVDCG ++ + YA ++ I+VI+ DHH E ++ Sbjct: 120 GLTKEIIDKALEDKISIIITVDCGISNIEEANYARSKNIEVIITDHHLPNKEIDIENIII 179 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P+ DLS + V F + +Y + L + L L L + Sbjct: 180 DPHLKGDLSPFKEIAGCYVSFKACLALY-----LSTTNLYNKNMVFLFLERLNNNITLHA 234 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSINAGGRIGE 313 + N + + + L E I + ++ N I Sbjct: 235 IEINNYILKKYITLESNNDLQININKLEEFSQSKYIIVFNKDEQNQLLNEFFNHKIDIET 294 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLE-------QAEAKVLTQCDDIQ 366 ++ + + + +L + + + E + E + Sbjct: 295 IDISENFV-KKYPKFAKKTLKELMQITKYFKYREINIKEKLYYIFYNIIFAINKDLLKNC 353 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + V + + R+ + G A+ + +I + Sbjct: 354 LKRLKFVAIGTIADNMPIINENRIVVREGLKEIALRENISINYLLKEANILTKPMITATD 413 Query: 427 FAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKI 479 A + ++ G A +T++ + + KF ++ I Sbjct: 414 IAFKIAPILNSTGRLEKADITIQFLLTEDINQIENKFKEIKNINILRKRKEDI 466 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 98/482 (20%), Positives = 189/482 (39%), Gaps = 26/482 (5%) Query: 111 LMMRFLSHCSVNANMY---IPDRIVDGYGPNPSLMEKFIN------EGAQLIITVDCGST 161 ++ FL + N ++ I + I+ Y S + IN I V Sbjct: 218 MVFLFLERLNNNITLHAIEINNYILKKYITLESNNDLQININKLEEFSQSKYIIVFNKDE 277 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVL 221 L N ID+ ID + ++ P +A L ++ + + + Sbjct: 278 QNQLLNEFFNHKIDIETIDISENFVKKYPKFAKKTLKELMQITKYFKYREINIKEKLYYI 337 Query: 222 IYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKA 281 Y I+ NK L L L VA+ T+ D +P+I NR V +GL + N + Sbjct: 338 FYNIIFAINKDLLKNCLKR-LKFVAIGTIADNMPIINENRIVVREGLKEIALRENISINY 396 Query: 282 LIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339 L++ NI ITA ++ + I P +N+ GR+ ++++ + L+++D ++E ++ + Sbjct: 397 LLKEANILTKPMITATDIAFKIAPILNSTGRLEKADITIQFLLTEDINQIENKFKEIKNI 456 Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 N R+ E ++ + IV GI +A RL + + + Sbjct: 457 NILRKRKEDISWNTHNENII-----FKNDKFIVCYDKHTPKGISSRMATRLSTYYQKVAV 511 Query: 400 AISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDF 459 ++ +E GS RS + +++S + +++ GGH AAG T+ Sbjct: 512 FLTRQE-NIIKGSIRSNNKVNSKELISM-IPNHLIINSGGHKAAAGFTLYESVLNEFIKE 569 Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 + I + ID ++ L+ ++ PYG G VF N +Q Sbjct: 570 LENALEKIEYKELYEDSILIDAIIPKDFNKKELLKIINLFEPYGHGFREFVFMMENVYIQ 629 Query: 520 SIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 +R ++ H+ M ++ + + +AI F GT + L G+ + + + + Sbjct: 630 DLRTIDKNGNSKHISMKIKN-NKDYYKAIYFN--GTQNIQKLGIKDGQNIDIICTISEDL 686 Query: 576 WR 577 + Sbjct: 687 YN 688 >gi|301063789|ref|ZP_07204290.1| DHH family protein [delta proteobacterium NaphS2] gi|300442108|gb|EFK06372.1| DHH family protein [delta proteobacterium NaphS2] Length = 180 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 5/176 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLI 74 W + + + + + A++L NR+++ K FL+P + +M DP+ Sbjct: 9 KIWKLAPQS---SFVSQLVAEVNVTPLQAQLLANRHLTDVHTIKPFLSPRLSQMM-DPMG 64 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + A I++A+ KI ++GDYD DG + AL+ FLSH ++ + Y+PDR+ +G Sbjct: 65 MKGMNDAVESILRAMEEQRKITVYGDYDADGLTATALLAVFLSHLGISVSTYVPDRLKEG 124 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 YG N +++ +GA LIITVDCG ++ + + A G+DV++ DHHQ+ E P Sbjct: 125 YGLNKKAVKRIQADGAGLIITVDCGISNGEEVNLAKTLGMDVVITDHHQMPPELKP 180 >gi|328553016|gb|AEB23508.1| single-strand DNA-specific exonuclease; phage SPbeta [Bacillus amyloliquefaciens TA208] Length = 562 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 117/593 (19%), Positives = 210/593 (35%), Gaps = 57/593 (9%) Query: 30 ALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89 + ++ + + ++ NR+++ A F N + ++ +L + DK +++ I Sbjct: 2 IYKLIGENDYKNPIYTIIKNRDIN---ADTFFNLNSSVINHY-SLLNNMDKGINCLLKHI 57 Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFIN 147 I I D D DG S A+++ +L+ + D+ G + I Sbjct: 58 ELKNNIFIQVDSDCDGYLSSAILINYLNQAFPGTKVKWRLHDKKDHGASL------ETIP 111 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 E L+I D GS Y Q +GID +V+DHH+ + E A++ N+L + Sbjct: 112 EDTHLLIIPDAGSNQYALHQELKERGIDTLVLDHHECEKES--NAAIIINNQLSNEYQNK 169 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG-LNRAYVVK 266 L G+V+ + L D S LDLVA+ + DV+ L R YV K Sbjct: 170 RLSGVGIVYKFCKALDDKLGLD-------LADSFLDLVAIGNIGDVIDLREPETRYYVKK 222 Query: 267 GLMVARRQGNPGLKAL--IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL--- 321 GL NP +K + + + I + I P INA R + ++ Sbjct: 223 GLKQI---KNPLIKEIVGRQSFFLDGNINIHFTAFSIVPFINAAIRYATMEEKTDMMKAL 279 Query: 322 ----------ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + + + +NR+ + L + + ++ Sbjct: 280 LGSQESVYYPRKKIYEPIVKSVARRISNTKNRQKKSLEKPVNVLIEQLIKENKTNDKVIV 339 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEE 431 + D GL+A +L +KF RP ++GK GS R E I E Sbjct: 340 LDVSDELKSSFTGLVATQLAKKFKRPVMLGRKTKEGKFGGSARGYEKSGIKDFKQLLTET 399 Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 G+ GHA A G +E F L ++ V ++D ++ A+ ++ Sbjct: 400 GLFNFCEGHANAFGFEIEAEYFENLSTQLNSIIEA---DVLLEDVHEVDFIIPAADMDAT 456 Query: 492 LIDMLESAG-PYGAGNPNPVFAFPNHKL--QSIRVVNLAHLQMTFESQDSETLQAIAFRV 548 LI + +G+ P+ A ++ +RV + + Sbjct: 457 LIKSIHKYRDDWGSTVEEPLIAIEGIQINNTDVRVYKNRTSTFVINVGEYKL-------T 509 Query: 549 YGTPLGEFLMQSRGK----RMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 G+F + V G VN + + ++D + F Sbjct: 510 KPYYKGDFDELFDNGDETFYLDVVGKCKVNKYENKSAPAVEIVDIEVTDSFLF 562 >gi|258616312|ref|ZP_05714082.1| single-stranded-DNA-specific exonuclease RecJ [Enterococcus faecium DO] Length = 155 Score = 166 bits (421), Expect = 7e-39, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID-YAKDFLNPSIRLLMPDPL 73 F W + L + ++ + V ++L R + FL+P + L DP Sbjct: 5 NFDWKLSETEPS-ESFLQMIRELKLSPFVGKLLWQRGYHEEKDINRFLHPKEQELH-DPY 62 Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 ++ D DKA RI +A+ + EKI+++GDYD DG S +M L +++P+R Sbjct: 63 LMHDMDKAISRIQEAVISGEKILVYGDYDADGITSATVMKETLELLGAEVEVFLPNRFEH 122 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYD 164 GYGPN S+ ++ I EG QLIITVD G D Sbjct: 123 GYGPNQSVYQEKIEEGIQLIITVDNGVAGND 153 >gi|331269248|ref|YP_004395740.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum BKT015925] gi|329125798|gb|AEB75743.1| single-stranded-DNA-specific exonuclease RecJ, putative [Clostridium botulinum BKT015925] Length = 303 Score = 163 bits (413), Expect = 6e-38, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 11/275 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 D LT+ +KA RI +A+ EKI+I G YD+DG SV+L+M L + + + YIPD Sbjct: 23 DSFSLTEVEKALNRITKAVNEREKIVICGSYDLDGITSVSLLMLILKYLNADVEYYIPDT 82 Query: 131 IVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 + G N +++E I GA LIITV CG S ++ N GIDVI+ D+H I Sbjct: 83 LEKGDIFNCNVIENHIKLLGASLIITVGCGVNSVKEVELCRNLGIDVIITDYH-KPKTSI 141 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 P ++NPN D + L A G+ + + +I + LDLVA+ Sbjct: 142 PNTIVINPNGKDYVYSLQSLNAVGIAYKLACVIAE-------NYHMKCVEKYLDLVAVGI 194 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINA 307 VPL+G N + KG+ N G+KA+ NI +T + + ++ P +NA Sbjct: 195 ASSNVPLVGENLDMLEKGMSYMVDTNNHGIKAITTINNIKKIDFLTLKKICKIVMPKVNA 254 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 GR+ ++ + L + DS+ + +A ++ + Sbjct: 255 VGRMDDARIVVELFTTSDSERAKRIAKYINKKKEC 289 >gi|328947956|ref|YP_004365293.1| single-stranded-DNA-specific exonuclease RecJ [Treponema succinifaciens DSM 2489] gi|328448280|gb|AEB13996.1| single-stranded-DNA-specific exonuclease RecJ [Treponema succinifaciens DSM 2489] Length = 721 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 14/235 (5%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP 72 S +WV + K ++ + A + R ++ F+ +R +P Sbjct: 2 SSSKWVKKAIS--KEEVEKLKNKFSLDSLTASIFARRGITSGKDILYFMEDDLR-FQHNP 58 Query: 73 LILTDCDKAARRIVQAI-------YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 + + A RI+ A+ EK++IFGD DVDG + ++ L ++ Sbjct: 59 FLFNSMEDAVDRILAAVPEKDSPKEEHEKVLIFGDKDVDGVTATTVLYDELCSLGIDVQY 118 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 +P+ D YG + ++ F + LIITVDCG ++ +++A + GIDVIV+DHH K Sbjct: 119 RVPE-GDDAYGLSIQAVDDFAKQNGSLIITVDCGISNNAEIEHAADLGIDVIVLDHHNPK 177 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 ++N D + VV+ V+ + + + LL+ Sbjct: 178 ENIPSPAIILNAKLSDSGYPFEEISGCAVVYKVVSALR--FSKSKWYKADEALLN 230 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 165/392 (42%), Gaps = 14/392 (3%) Query: 204 SGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 G G + + V + + N + L LVALA + D++P+ NR + Sbjct: 335 YGDHAPTEIGGFYNIFVTYVQQDLKKNFPSDSEKEKHDLQLVALAALADIMPMRNENRLF 394 Query: 264 VVKGLMVARRQG-NPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 V G+ +PGLK L+ + + IT+ ++ + + P++NA GR+G++ + L Sbjct: 395 VRSGINSINENNVHPGLKELMSNLGLLGKRITSTDICWTLIPNLNAAGRLGQAGIAIELF 454 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 + D E LA K+ LN R+ A + +D + V ++ + G Sbjct: 455 TAKDDSYREQLAKKIIELNTKRKAFTQEAEAIAGTQARNSVNDF-NGKLSFVIDEKINKG 513 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA 441 + G+LA RL G P+ A+++ +GS RS G+D+ + + V GGH Sbjct: 514 VSGILAGRLVSSLGVPAMAMTYVG-NLVVGSMRSCRGYDVTAF--LDQLKDLFVSYGGHN 570 Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 AAG + E+ F ++ + +ID L S + L +++ P Sbjct: 571 FAAGFSFEKEKFEEFKRRTKEL-SGTINLSDKNDEIQIDAELPPSYMTPDLKKIIDRFEP 629 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN---LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 G NP VF N + S V+ HL++T + ++ I + +F Sbjct: 630 TGNENPKLVFLAKNLPIVSGLVMGKAEKQHLKITVDCGKNK-WPCIFWNEGERLHRDF-- 686 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G ++++ ++ N + G++ QL +L Sbjct: 687 -DVGDKINIIFNIERNVFNGAETLQLMLLGIE 717 >gi|15895544|ref|NP_348893.1| SS-DNA-specific exonuclease domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15025280|gb|AAK80233.1|AE007728_12 Protein related to N-terminal domain of SS-DNA-specific exonuclease RecJ [Clostridium acetobutylicum ATCC 824] gi|325509692|gb|ADZ21328.1| N-terminal domain of SS-DNA-specific exonuclease RecJ [Clostridium acetobutylicum EA 2018] Length = 289 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 11/273 (4%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 M +P ++ ++A +RI +AI N EKI+++G DVD +++M+ L + + + IP Sbjct: 16 MHNPFLIEGMNEALQRIAKAINNREKIVLYGYCDVDSIIGMSIMLLVLKYLNADVEYLIP 75 Query: 129 DRIVDGYGPNPSLM-EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 D Y N + +K GA L+IT+ CG S ++ ID IV+D+H++ +E Sbjct: 76 DDFCGSYEVNADYVNDKIKYFGANLLITIGCGINSKESTALLKKLKIDTIVVDYHEMCNE 135 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 +VNPNR + C +G+VF + I + LDL A+ Sbjct: 136 -EDYAIVVNPNRKESKYPFNEFCVSGIVFKLCEAIS-------MYYQMKCVNKYLDLAAI 187 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSI 305 T+ L G N+ V +G+ + N G++AL++ ++ E L + P++ Sbjct: 188 GTIHKCEELSGENKIIVDQGIRKIQNTNNYGIEALLKLKSVEKVDIDEVRKLSEAVVPTV 247 Query: 306 NAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 NA G++ + + +L ++DS + E +A L+ Sbjct: 248 NAVGKMDNARIIVQLFTTEDSYKAEQIAKYLNN 280 >gi|153955749|ref|YP_001396514.1| hypothetical protein CKL_3135 [Clostridium kluyveri DSM 555] gi|146348607|gb|EDK35143.1| Conserved hypothetical protein related DNA exonuclease [Clostridium kluyveri DSM 555] Length = 283 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 10/274 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 M +P +L D ++A ++I++A+ EKI+I+G D+DG ASVA+++ L + + + +I Sbjct: 16 MENPFLLKDMEEAMKKIIKAVNKREKIVIYGTCDLDGIASVAILLLVLKYLNADVEYFIS 75 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 D+I D + + GA+LIIT CG S ++ GIDVI+ D+H+ Sbjct: 76 DKINDSSIKSDIIENHIKFLGAKLIITAGCGIKSLPEIELCKRLGIDVIITDYHKCGK-F 134 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 +P ++NPN+ L A GVVF + + + LDLV L Sbjct: 135 LPETIIINPNQPGCRYPFKDLIAVGVVFKLCQAVS-------IYYNMKYVSKYLDLVTLG 187 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSIN 306 + G N V +G+ N G+KAL++ I + I SI+ Sbjct: 188 IFSKKSYITGENEIMVREGMRYLNYTNNYGVKALLKVNKIHTINQENICELSNKIISSIS 247 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340 I + + L ++ E +A L Sbjct: 248 CKRYIDNARIAVELFTTESIDRAEQIAKYLKNEM 281 >gi|219856117|ref|YP_002473239.1| hypothetical protein CKR_2774 [Clostridium kluyveri NBRC 12016] gi|219569841|dbj|BAH07825.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 10/274 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 M +P +L D ++A ++I++A+ EKI+I+G D+DG ASVA+++ L + + + +I Sbjct: 26 MENPFLLKDMEEAMKKIIKAVNKREKIVIYGTCDLDGIASVAILLLVLKYLNADVEYFIS 85 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 D+I D + + GA+LIIT CG S ++ GIDVI+ D+H+ Sbjct: 86 DKINDSSIKSDIIENHIKFLGAKLIITAGCGIKSLPEIELCKRLGIDVIITDYHKCGK-F 144 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 +P ++NPN+ L A GVVF + + + LDLV L Sbjct: 145 LPETIIINPNQPGCRYPFKDLIAVGVVFKLCQAVS-------IYYNMKYVSKYLDLVTLG 197 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSIN 306 + G N V +G+ N G+KAL++ I + I SI+ Sbjct: 198 IFSKKSYITGENEIMVREGMRYLNYTNNYGVKALLKVNKIHTINQENICELSNKIISSIS 257 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340 I + + L ++ E +A L Sbjct: 258 CKRYIDNARIAVELFTTESIDRAEQIAKYLKNEM 291 >gi|300856536|ref|YP_003781520.1| putative single-stranded-DNA-specific exonuclease RecJ [Clostridium ljungdahlii DSM 13528] gi|300436651|gb|ADK16418.1| predicted single-stranded-DNA-specific exonuclease RecJ [Clostridium ljungdahlii DSM 13528] Length = 282 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 10/272 (3%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 M +P +L D +KA +RI++A+ EKI+I+G D+DG SV+LM+ L + + + +I Sbjct: 16 MNNPFLLKDMEKALKRIIKAVNEREKIVIYGTCDLDGITSVSLMLLVLKYLNADVEYFIS 75 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 D+I D + + GA++IIT CG S ++ GIDVI+ D+H+ Sbjct: 76 DKINDYSIKSDIIKNHIKFLGAKVIITAGCGIQSVSQIELCKTLGIDVIITDYHKSGE-I 134 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 +P +VNPN+ L A GV F + I + LDLVAL Sbjct: 135 LPKAIIVNPNQKQCTYPFKDLTAVGVTFKLSQAIS-------MYYDMKYISKYLDLVALG 187 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306 + + G N+ V +G+ + N G++AL++ +ISS L + SI Sbjct: 188 IFSRGIDITGENKIMVNEGMYYLKCTNNYGVRALLKVNDISSVNIENVRELSNKMMCSIK 247 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 I + + L I+++ E +A L Sbjct: 248 NKRYIDNARIAVELFITENMDRAEQIAKYLKN 279 >gi|253682373|ref|ZP_04863170.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum D str. 1873] gi|253562085|gb|EES91537.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum D str. 1873] Length = 298 Score = 160 bits (404), Expect = 7e-37, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 11/275 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 D T+ KA RI +A+ EKI+I G YD+DG SV+L+M L + + + YIPD Sbjct: 18 DSFSSTEVKKALNRITKAVNEREKIVICGSYDLDGITSVSLLMLILKYLNADVEYYIPDT 77 Query: 131 IVDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 + N +++E I GA LIITV CG S + ++ N GIDVI+ D+H I Sbjct: 78 LEKSDIFNCNVIENHITLLGASLIITVGCGINSVEEVELCRNLGIDVIITDYH-KPKINI 136 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 P ++NPNR D + + A G+V+ + I + LDLVA+ Sbjct: 137 PNTIVINPNRKDGIYSFENFNAVGIVYKLSCAIAE-------NYHMKCVEKYLDLVAIGI 189 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINA 307 VPL+G + KG+ N G+KA+ + NI +T + + ++ P +NA Sbjct: 190 ASSNVPLVGETLDMLEKGMSYMVNTNNHGIKAITKINNIKKIDFLTLKEICNIVMPKVNA 249 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 GR+ ++ + L + DS+ + +A ++ + Sbjct: 250 VGRMDDARIVVELFTTSDSERAKRIAKYINKKKEC 284 >gi|21324506|dbj|BAB99130.1| Single-stranded DNA-specific exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 626 Score = 159 bits (403), Expect = 9e-37, Method: Composition-based stats. Identities = 117/586 (19%), Positives = 202/586 (34%), Gaps = 89/586 (15%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD-RIVD 133 L D D+A I I +++I I D+D+DG ++ + L+ NM +PD R Sbjct: 50 LPDSDRATALIHDHITKAQEITIITDFDMDGISAGVIAYAGLAELGAQVNMVVPDYRGER 109 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + + LIIT D G S++ + A + I V+V DHH A Sbjct: 110 NVTASDIDRALELYPATSLIITCDVGIGSHEGIARAHERSIAVLVTDHHMEVEPCQ-ADV 168 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NPNR+D +C A V+F L R R D + D+ L + + DV Sbjct: 169 VLNPNRIDSDYPNKDICGAQVIFATLSDYARRYRADKII----DINLLAVFSGIGALADV 224 Query: 254 VPLIGLNRAYVVKGLM-------------------VARRQGNPGLKALIERVNISSP--- 291 +PL R V + + A R NP L+ VN S Sbjct: 225 MPLTRDTRPTVKQAIALLRLAIPQVSKNRFGGWDTYAARSVNPDTSTLMHIVNASQHDHR 284 Query: 292 --------------------------ITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325 I+ +G+ +GP NA R+G S L+ + Sbjct: 285 FIAAFQGISILLGELIAQKKLVNIDNISESFIGFTLGPMFNATRRVGGDMHDSFLVFAPH 344 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAK-VLTQCDDIQQASVIVVEGDRWHPGIVG 384 + +M + R++++ + +K Q V GI+G Sbjct: 345 AALASQPSMNPNRHAAISRIIDNNERRKELSKSSYAAVHSSDQPYAPFVWLSEAPSGILG 404 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD-IGKMVSFAVEEGILVKGGGHAMA 443 L+A++L + P+ I GS RS E I ++ + + + + GH A Sbjct: 405 LIASQLTRESDVPAIVI---NPDTLSGSARSPEWAPIITQVNTLSAQGHGGIHAAGHEYA 461 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK----------------------IDG 481 G+ + + P +D Sbjct: 462 CGMRFDNHDDIVTFVATLDALDKNTPREAQPADLHLVDIDHARPVLDNPSLTQELSTVDA 521 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSET 540 ++A+ + + LID L+ P+G G P + +V+ H + + T Sbjct: 522 AVDAAQL-LVLIDQLDQLQPFGHGFTYPRIDVTFRPAETEFKVMGQHHQHLKVITHSGLT 580 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 L + + + ++ + + ++ L VN +RG Q V Sbjct: 581 L--LWWN----KAQQLDEIAQSELVTMSVELDVNMFRGFISPQGIV 620 >gi|19552941|ref|NP_600943.1| single-stranded DNA-specific exonuclease [Corynebacterium glutamicum ATCC 13032] gi|62390618|ref|YP_226020.1| single-stranded-DNA-specific exonuclease [Corynebacterium glutamicum ATCC 13032] gi|41325956|emb|CAF20119.1| SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE [Corynebacterium glutamicum ATCC 13032] Length = 620 Score = 159 bits (403), Expect = 9e-37, Method: Composition-based stats. Identities = 117/586 (19%), Positives = 202/586 (34%), Gaps = 89/586 (15%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD-RIVD 133 L D D+A I I +++I I D+D+DG ++ + L+ NM +PD R Sbjct: 44 LPDSDRATALIHDHITKAQEITIITDFDMDGISAGVIAYAGLAELGAQVNMVVPDYRGER 103 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + + LIIT D G S++ + A + I V+V DHH A Sbjct: 104 NVTASDIDRALELYPATSLIITCDVGIGSHEGIARAHERSIAVLVTDHHMEVEPCQ-ADV 162 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++NPNR+D +C A V+F L R R D + D+ L + + DV Sbjct: 163 VLNPNRIDSDYPNKDICGAQVIFATLSDYARRYRADKII----DINLLAVFSGIGALADV 218 Query: 254 VPLIGLNRAYVVKGLM-------------------VARRQGNPGLKALIERVNISSP--- 291 +PL R V + + A R NP L+ VN S Sbjct: 219 MPLTRDTRPTVKQAIALLRLAIPQVSKNRFGGWDTYAARSVNPDTSTLMHIVNASQHDHR 278 Query: 292 --------------------------ITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325 I+ +G+ +GP NA R+G S L+ + Sbjct: 279 FIAAFQGISILLGELIAQKKLVNIDNISESFIGFTLGPMFNATRRVGGDMHDSFLVFAPH 338 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAK-VLTQCDDIQQASVIVVEGDRWHPGIVG 384 + +M + R++++ + +K Q V GI+G Sbjct: 339 AALASQPSMNPNRHAAISRIIDNNERRKELSKSSYAAVHSSDQPYAPFVWLSEAPSGILG 398 Query: 385 LLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD-IGKMVSFAVEEGILVKGGGHAMA 443 L+A++L + P+ I GS RS E I ++ + + + + GH A Sbjct: 399 LIASQLTRESDVPAIVI---NPDTLSGSARSPEWAPIITQVNTLSAQGHGGIHAAGHEYA 455 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK----------------------IDG 481 G+ + + P +D Sbjct: 456 CGMRFDNHDDIVTFVATLDALDKNTPREAQPADLHLVDIDHARPVLDNPSLTQELSTVDA 515 Query: 482 VLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ-SIRVVNLAHLQMTFESQDSET 540 ++A+ + + LID L+ P+G G P + +V+ H + + T Sbjct: 516 AVDAAQL-LVLIDQLDQLQPFGHGFTYPRIDVTFRPAETEFKVMGQHHQHLKVITHSGLT 574 Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 L + + + ++ + + ++ L VN +RG Q V Sbjct: 575 L--LWWN----KAQQLDEIAQSELVTMSVELDVNMFRGFISPQGIV 614 >gi|300871302|ref|YP_003786175.1| single-stranded-DNA-specific exonuclease [Brachyspira pilosicoli 95/1000] gi|300689003|gb|ADK31674.1| single-stranded-DNA-specific exonuclease [Brachyspira pilosicoli 95/1000] Length = 723 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 98/433 (22%), Positives = 176/433 (40%), Gaps = 21/433 (4%) Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 YD + G + ++ VK+ + A L D L +F + Sbjct: 302 LPEYDNVYDLLQLGANYGGVNIKSVKTLDEFALLLKVNIYKYDNILYRDLIIKMEIFRRM 361 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + + L + LV TV DVVPLI NRAY+ L + + Sbjct: 362 YYLSQK-------QLQNYIKRESILVLFGTVADVVPLIEENRAYIKCALAELEKPNHIRY 414 Query: 280 KALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 ++ER+ + ++ + + + + + P INA GR+G+ RLL S+ +E L+ ++ Sbjct: 415 NVILERIKLLNTKVDTQAVSWRLAPFINAAGRMGKPEYALRLLTSETREEAFQLSEEVYN 474 Query: 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPS 398 LN+ R+ + + + + +I+V+ D G+ GL+A ++ ++G+ + Sbjct: 475 LNETRKSLTESNFNIVCEYIKEN--NCMSYPIIIVKSDLIDRGLTGLIAGKVLSQYGKTA 532 Query: 399 FAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + +EDG GS RS + M+ L K GGH AAG TV NF + Sbjct: 533 VILYESKEDGVCTGSIRSRGDDNARDMLE--YSSVYLDKFGGHKNAAGFTVSVNNFEKFA 590 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 K+A D L+ +N+ + LE PYG N PVF+ Sbjct: 591 KKIIKYASEENFNTSKDEK-TYDLELDFKDINMQFAEYLELFEPYGFANEEPVFSTNRVT 649 Query: 518 LQSIRVVNLA---HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVN 574 + SI +N HL++ + ++ AI + E ++++ + +N Sbjct: 650 INSIEKINKNNKIHLKLQLQ-KNGIRANAIIWSSSEE---ECSKLEASNFINISYKIKIN 705 Query: 575 YWRGSKRCQLRVL 587 + GSK ++ + Sbjct: 706 RFNGSKEVKIYIE 718 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 3/186 (1%) Query: 38 AIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIM 96 + I+ +L R V S + DF I L +P + D + R+ +AI +EKI+ Sbjct: 8 NLNPIIKELLKLRGVVSKEDIFDFFFQDIYSL-SNPFNIRDMNAFVDRLKEAIEYNEKIL 66 Query: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 I+GD D DG + +++ L + N ++P+ GYG + ++E + N G LIITV Sbjct: 67 IYGDKDADGVTAASIIYNTLKAVTKNVEAFVPN-HEVGYGLSKDVIESYANSGVSLIITV 125 Query: 157 DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF 216 DCG ++ + +++A ID+IV DHH + AY + NP + + V F Sbjct: 126 DCGISNVEEVEFAREHSIDIIVTDHHDIPEILPNAYLIFNPKLSNTGFVSKNFSGCAVAF 185 Query: 217 LVLVLI 222 ++ Sbjct: 186 KLMQAF 191 >gi|183220699|ref|YP_001838695.1| single-stranded-DNA-specific exonuclease RecJ [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910800|ref|YP_001962355.1| single-stranded DNA-specific exonuclease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775476|gb|ABZ93777.1| Single-stranded DNA-specific exonuclease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779121|gb|ABZ97419.1| Single-stranded-DNA-specific exonuclease RecJ [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 662 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 19/369 (5%) Query: 229 DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV------KGLMVARRQGNPGLKAL 282 L DL + T+ D++PL+G NR +V L V ++ + L Sbjct: 296 QKIPEFFEQLEEETDLAGIGTITDMMPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELL 355 Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 E IT ++LG+ IGP INA GR+G++ LL+S++ E + A L +N+ Sbjct: 356 KELKLNPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENELEAKTRAKLLLSINEE 415 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R+ +++ E + + + I PG+ G++A R+ + + +P+ I+ Sbjct: 416 RKERTKRNMDRVE-RYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIA 474 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 ++G GS RS ++ ++ E + GGH A G ++ +L + Sbjct: 475 -PDNGDARGSVRSYGQENVLTLLESLSEH--FLHFGGHPEAGGFSISIDQIPKLEAALYE 531 Query: 463 FAHNIVPALITTPV---FKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 A + P D + + L+ + P+G GNP+ N K Sbjct: 532 KAKLWLAEDEERPKEHLINTDFTVLPEEMGEKLLKEWKDLEPFGQGNPDIKLGIRNAKAI 591 Query: 520 SIRVV-NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578 + + H++ S +L+ + + G F+ + G L N+++G Sbjct: 592 HLTPLSGGKHVRFHII--GSGSLKYMIWN-KGEEFQSFMSNH--GSFDLVGSLEENFYQG 646 Query: 579 SKRCQLRVL 587 Q V Sbjct: 647 RSTLQFIVE 655 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 9/188 (4%) Query: 41 DIVARVLVNR--NVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 ++ R LV+R + K+ L L P L D + A ++ +++KI+++ Sbjct: 14 PLL-RYLVDRREGLKNTSPKELLFSDFSCLH-SPFSLPDIEDAVSLLLSFAKSNKKILLY 71 Query: 99 GDYDVDGAASVALMMRFLSH----CSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 GD D DG +S L+ FL + N + + D YG + K L++ Sbjct: 72 GDRDSDGVSSTCLLAFFLKSHPEFLTANLEVMVSS-ESDPYGLCKEAVSKIQKAKPDLLV 130 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 T+D GS+ D + T GI VIV+DHH+V ALVNP R D + +C A + Sbjct: 131 TLDFGSSQADEIDSLTALGIQVIVLDHHEVPVRIPKNCALVNPRRTDSEYPEKKICTAAL 190 Query: 215 VFLVLVLI 222 F ++ I Sbjct: 191 SFKLVSAI 198 >gi|213580223|ref|ZP_03362049.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 173 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 8/178 (4%) Query: 418 GFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTP 475 G + + +++K GGHAMAAGL++E F + F + + + Sbjct: 1 GLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQG 60 Query: 476 VFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES 535 DG L+A+ +++ + +L AGP+G P P+F +L R+V HL++ E Sbjct: 61 EVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEP 119 Query: 536 -QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L IAF + T + + + + + L +N +RG++ Q+ + D P+ Sbjct: 120 VGGGPLLDGIAFNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 173 >gi|118443781|ref|YP_877915.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium novyi NT] gi|118134237|gb|ABK61281.1| single-stranded-DNA-specific exonuclease RecJ, putative [Clostridium novyi NT] Length = 292 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 11/267 (4%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 ++A++RI +A+ EKI+I G YD+DG SV+L++ L + + + YIPD + G N Sbjct: 26 NEASKRISRAVNKREKIVICGSYDLDGITSVSLLILILKYLNADVEYYIPDTLQKGDTFN 85 Query: 139 PSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 ++E I GA LIITV CG S + ++ + GID+I+ D+H+ IP +V+P Sbjct: 86 CDIIENHIKLLGASLIITVGCGINSIEEVELCRSLGIDIIITDYHR-PKGNIPNTIVVDP 144 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N + A G+ + + I + LDLVAL VPL+ Sbjct: 145 NDGLSKYSFKNFNAVGIAYKLAESIAEHY-------HVKCIEKYLDLVALGIASSDVPLV 197 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESN 315 G N + KG+ N G+KAL E NI +T + + M+ P +NA GR+ ++ Sbjct: 198 GENLDMLKKGMSYITDSNNHGIKALTEINNIEYIDFLTLKKMCKMVMPKVNAVGRMDDAR 257 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQN 342 + L + DS+ +A ++ N+ Sbjct: 258 IVVELFTTADSERARRIAKYINKKNEF 284 >gi|309799911|ref|ZP_07694115.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] gi|308116438|gb|EFO53910.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] Length = 291 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 10/287 (3%) Query: 240 SLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLG 298 LLDLVA+ T+ D+V L NR V GL V R GL+ + E ISS +T E +G Sbjct: 7 ELLDLVAIGTIADMVSLTDENRIMVQYGLEVLRNTQRMGLQEMFEIAGISSSDVTEETVG 66 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 + + P +NA GR+ + N LL D +E+ +A+ + N+ R+ + ++ ++A+ V Sbjct: 67 FQLAPRLNALGRLDDPNPAIDLLTGFDDEEVHEIALLIHQKNEERKEIVQSIYDEAKGMV 126 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG 418 + SV V+ + W+PG++G++A RL E+ G+ ++ EDG+ GS RSIE Sbjct: 127 ------DPERSVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNI-EDGRAKGSARSIEA 179 Query: 419 FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFK 478 DI + + + GGHA AAG+T+E L D + + Sbjct: 180 VDI--FEALDPHRELFITFGGHAGAAGMTLEEDKLEVLSDLLEAYIREKGADAQGKNNLF 237 Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525 +D L+ +++ + E P+G N PVF + ++++ RV+ Sbjct: 238 LDEELDLETLSLETVKSFERLAPFGMDNQKPVFYIRDFQVENARVMG 284 >gi|153867826|ref|ZP_01998054.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. SS] gi|152144854|gb|EDN71946.1| single-stranded-DNA-specific exonuclease RecJ [Beggiatoa sp. SS] Length = 333 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 107/325 (32%), Positives = 169/325 (52%), Gaps = 14/325 (4%) Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCA 211 ++ITVD G +S ++ A +G+ V+V DHH E+ A A+VNPN+ D +LC Sbjct: 1 MLITVDNGISSIKGVKAAKEKGMRVLVTDHHLQGKEKPDADAIVNPNQEGDTFPSKNLCG 60 Query: 212 AGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 GV+F V++ + LR+ +L +LLDLVAL TV DVV L NR + +G Sbjct: 61 VGVIFYVMMALRAHLREKGWFTEQGIPEPNLGNLLDLVALGTVADVVTLDYNNRILIEQG 120 Query: 268 LMVARRQ-GNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDD 325 L R PG++AL++ + A +L + +GP +NA GR+ + + G L+S+ Sbjct: 121 LRRIRANYCCPGIRALVQISKREQSYLIASDLAFYLGPRLNAAGRMDDMSYGIACLLSET 180 Query: 326 SQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGL 385 E + A L++ NQ RRL E+ M ++A + T D + + + ++WH G++G+ Sbjct: 181 DFEAKQHADLLEIFNQERRLEEAKMQQEALDMLDTLGDPDKLPIGLCLLDEKWHQGVIGI 240 Query: 386 LAARLKEKFGRPSFAISF------EEDGKGIGSGRSIEGFDIGKMVS--FAVEEGILVKG 437 LAAR+KE+ RP + + GSGRS+EG + ++ + ++ Sbjct: 241 LAARIKERLHRPVIIFTHDKDKKDQGQKMIRGSGRSVEGVHLRDVLEGIATQQPEVMGHF 300 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQK 462 GGHAMAAGLT+ F F Sbjct: 301 GGHAMAAGLTIPHSQFQAFQQAFDP 325 >gi|168187983|ref|ZP_02622618.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum C str. Eklund] gi|169294175|gb|EDS76308.1| single-stranded-DNA-specific exonuclease RecJ [Clostridium botulinum C str. Eklund] Length = 291 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 11/267 (4%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 ++A++RI +A+ EKI+I G YD+DG SV+L++ L + + + YIPD + G N Sbjct: 26 NEASKRISRAVNKREKIVICGSYDLDGITSVSLLILILKYLNADVEYYIPDTLQKGDTFN 85 Query: 139 PSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 ++E I GA LIITV CG S ++ + GIDVI+ D+H+ IP +V+P Sbjct: 86 CDVIENHIKLLGASLIITVGCGINSIREVELCRSLGIDVIITDYHR-PKWNIPNTIVVDP 144 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 N + A G+ + + I + LDLVAL +PL+ Sbjct: 145 NDGLSKYSFKNFNAVGIAYKLAEFIAEHY-------HVKCIEKYLDLVALGIASSDIPLV 197 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNIS--SPITAENLGYMIGPSINAGGRIGESN 315 G N + KG+ N G+KAL E NI +T + + ++ P +NA GR+ ++ Sbjct: 198 GENLDMLKKGMSYITESNNHGIKALTEINNIDDIDFLTLKKMCRIVMPKVNAVGRMDDAR 257 Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQN 342 + L + S+ +A ++ N+ Sbjct: 258 IVVELFTTAHSERARRIAKYINKKNEF 284 >gi|297519987|ref|ZP_06938373.1| ssDNA exonuclease RecJ [Escherichia coli OP50] Length = 300 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 9/300 (3%) Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLN----FDLLSLLDLVALATVCDVVPLIGLNRAYV 264 + GV F +++ + LR +L LLDLVAL TV DVVPL NR Sbjct: 1 MAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILT 60 Query: 265 VKGLMVARR-QGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLI 322 +G+ R + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL+ Sbjct: 61 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 120 Query: 323 SDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPG 381 D+ E +LA +LD LNQ R+ +E M +A + + + WH G Sbjct: 121 CDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQG 180 Query: 382 IVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGG 439 +VG+LA+R+KE+F RP A + DG GSGRSI+G + + G+++K GG Sbjct: 181 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMILKFGG 240 Query: 440 HAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESA 499 HAMAAGL++E F F + + + DG L+ + + + + +L A Sbjct: 241 HAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 300 >gi|319938090|ref|ZP_08012490.1| hypothetical protein HMPREF9488_03326 [Coprobacillus sp. 29_1] gi|319806996|gb|EFW03635.1| hypothetical protein HMPREF9488_03326 [Coprobacillus sp. 29_1] Length = 329 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 21/279 (7%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 M D +L D + I + I N++KI+I GDYD DG S + + L +C IP Sbjct: 41 MHDKYLLHDLREVVHAIGEFIKNNKKIVIIGDYDADGVTSTSCLYLTLDYCGACVEYLIP 100 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 R+ +GYG + +L++ I A +I+T D G ++ +A++YA ++GI VIV DHH Sbjct: 101 HRVKNGYGLSHALVDDAIAINADVILTCDNGISALEAIRYAKSKGIIVIVTDHHTPGETL 160 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY--------RILRQDNKVPLNFDLLS 240 A +V+P D ++ + + + I + L + F L Sbjct: 161 PIADYIVHPALGD--YPFSNISGCQTAYKLCLGIIEECSPLKDKKLIKKAMRRKEFQLKD 218 Query: 241 LL-DLVALATVCDVVPL---------IGLNRAYVVKGLMVARRQGNPGLKALIERVNISS 290 L L A++ V DV+PL + NR +++ G+ + ++ + ++ +++ + ++ Sbjct: 219 YLFQLSAISIVTDVMPLASIDEDTAKVNENRKWLMDGIEMIKKNPDWRIQMMLKELGVNQ 278 Query: 291 PITAEN-LGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 E +G+ +GP +NA GR+ ++ + L + +E Sbjct: 279 KTFEETSIGFYVGPCLNAVGRLTDAGKAVQFLTAQTKEE 317 >gi|255526669|ref|ZP_05393574.1| phosphoesterase RecJ domain protein [Clostridium carboxidivorans P7] gi|296187174|ref|ZP_06855571.1| DHH family protein [Clostridium carboxidivorans P7] gi|255509649|gb|EET85984.1| phosphoesterase RecJ domain protein [Clostridium carboxidivorans P7] gi|296048209|gb|EFG87646.1| DHH family protein [Clostridium carboxidivorans P7] Length = 290 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 11/274 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 DP +L +A RRI++A+ EKI+I+G YD+DG +V+L++ L + + + +P+ Sbjct: 18 DPFLLKGMKEALRRIIKAVNEREKIVIYGYYDLDGITAVSLLLLVLKYLNADVEYVVPED 77 Query: 131 IVDGYGPNPSLMEKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 + + +G + +++ GA+LIITV CG S ++ N GIDVI+ D+H+ + Sbjct: 78 MDEDFGIDSDIIKNHVKFLGAKLIITVGCGVNSVSQVELCKNLGIDVIITDYHKCSKV-L 136 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 P ++NPN+ L A G+ F + I + LDLV + Sbjct: 137 PETLIINPNQEGCKYTFKDLTAVGIAFKLAQSIS-------MYYQMKCISKYLDLVMIGI 189 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSINA 307 + + L G N+ V +G+ N GLKALI+ NI + Y I P + Sbjct: 190 ISRNISLTGENKIMVSQGMYHLNYTNNYGLKALIKIHNIVNINKESICKLAYNIVPVSKS 249 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 + + + L + E +A L + Sbjct: 250 RRNVDNARIAVELFTTASMDRAEQIAKYLKNETK 283 >gi|94988416|ref|YP_596517.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS9429] gi|94541924|gb|ABF31973.1| single-stranded-DNA-specific exonuclease recJ [Streptococcus pyogenes MGAS9429] Length = 445 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 16/278 (5%) Query: 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L D QE + +A+ + N+ R+ + + +QA A V Q V V+ Sbjct: 5 QPLSYLTGFDDQEAQAIALMIKKKNEERKALVQDIFDQAMAMVDPQ------KPVQVLAQ 58 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILV 435 WHPG++G++A R+ E G+ ++ ++G GS RS+E +I + + + Sbjct: 59 AGWHPGVLGIVAGRIMETIGQTVVVLTI-DNGFAKGSARSLEAINI--FEALNGKRELFT 115 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDM 495 GGHA AAG+T+ N L DF +F ID L+ +++ ++ Sbjct: 116 AFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSLDILKS 175 Query: 496 LESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIAFRVYGTPL 553 L+ PYG + PVF + ++ R + HL+ SQ + +AF G+ L Sbjct: 176 LDKLAPYGMDHQKPVFYVKDIRVSQARTIGQDQSHLKFKV-SQGKASFDVLAFGQ-GSQL 233 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 EF + + + L VN+W G+ Q ++DA Sbjct: 234 QEFRQATG---LELAVTLSVNHWNGNTSLQFMLVDARV 268 >gi|309799910|ref|ZP_07694114.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] gi|308116437|gb|EFO53909.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] Length = 141 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 1/134 (0%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 M DP +L D +KA RI AI E I+I+GDYD DG S +++ L +Y+P Sbjct: 1 MHDPYLLHDMEKAVERIRHAIEQGELILIYGDYDADGMTSASIVKESLEQLGAECLVYLP 60 Query: 129 DRIVDGYGPNPSLMEKFINEG-AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 +R DGYGPN S+ + FI + LI+TVD G ++A+ A + G+DVIV DHH + Sbjct: 61 NRFTDGYGPNASVYKYFIEQQGVSLIVTVDNGVAGHEAIDLARSMGVDVIVTDHHSIPEV 120 Query: 188 EIPAYALVNPNRLD 201 AYA+++P Sbjct: 121 LPDAYAIIHPEHPG 134 >gi|297521152|ref|ZP_06939538.1| ssDNA exonuclease RecJ [Escherichia coli OP50] Length = 194 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 5/177 (2%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 G +S+ +++A + GI VIV DHH A A++NPN D L GV Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGV 194 >gi|167720340|ref|ZP_02403576.1| single-stranded-DNA-specific exonuclease RecJ [Burkholderia pseudomallei DM98] Length = 196 Score = 147 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 7/192 (3%) Query: 27 INRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRI 85 A+ +H + ++AR+ R + S + ++ L+P P L C +AA + Sbjct: 11 PAALDALA-RHGLHPVLARLYAARGIASPADVET----ALSRLVP-PAQLKGCAQAAALL 64 Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 A+ K+++ DYD DGA + A+ +R L + +P+R GYG P ++E Sbjct: 65 ADALEAGRKMLVVADYDCDGATACAVAVRGLRMFGAKIDYLVPNRFEYGYGLTPEIVELA 124 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 L+ITVD G S D + A +GIDV+V DHH A A+VNPN+ Sbjct: 125 AARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFP 184 Query: 206 QGHLCAAGVVFL 217 H+ GV+F Sbjct: 185 SKHIAGVGVMFY 196 >gi|258545643|ref|ZP_05705877.1| single-stranded-DNA-specific exonuclease RecJ [Cardiobacterium hominis ATCC 15826] gi|258519110|gb|EEV87969.1| single-stranded-DNA-specific exonuclease RecJ [Cardiobacterium hominis ATCC 15826] Length = 269 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 129/283 (45%), Gaps = 18/283 (6%) Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 + G LL+++D Q + A + D N++R+ +E+ +++A +V + Sbjct: 1 MSDGVALLLAEDWQTAQDYAQQSDEKNRDRKALENEAVQEAARQVSPAL------PLAAA 54 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRSIEGFDIGKMVSFA--VE 430 WH GI+G+LAARLK +F RP+ + EDG S RS+ + ++++ A Sbjct: 55 YDPAWHEGIIGILAARLKSRFARPALVATDSNEDGWIKASLRSVSAVPLHELLNDAARHL 114 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 G ++ GGHA AAGL+V+R ++ L + + + IDG L A+ +N+ Sbjct: 115 PGEALRYGGHAAAAGLSVKREHYPALIEAINRAFLETYGTTVPPEPVYIDGELPAALLNL 174 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVY 549 LE P+GA P PVFA P ++ R++ AH ++ A F Sbjct: 175 DWARYLERLEPWGASLPVPVFANP-FEVLDCRLLGSAHTRLVLREMHSGNAYNASWFFHT 233 Query: 550 GTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 G R+ + L VN + G +R L V A P+ Sbjct: 234 ADY-------RPGTRLRIAYQLQVNRFYGDERLSLLVQHAQPL 269 >gi|217031568|ref|ZP_03437073.1| hypothetical protein HPB128_21g126 [Helicobacter pylori B128] gi|216946768|gb|EEC25364.1| hypothetical protein HPB128_21g126 [Helicobacter pylori B128] Length = 211 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 10/195 (5%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYI 127 P P + D KAA +I++A+ + +I++ GDYD DG S +M +F + + I Sbjct: 23 FPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAI 82 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ-VKS 186 P+R +DGYG + +EK A LIITVD G ++++ ++ + +I+ DHH Sbjct: 83 PNRFIDGYGISKKFLEK---HHAPLIITVDNGISAFEVARFCKEKNYTLIITDHHCLHHD 139 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E AYA++NP + D Q +C A V F + I+++L ++ LL L Sbjct: 140 EVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSS-----ELLCLAG 194 Query: 247 LATVCDVVPLIGLNR 261 +AT+ D++PL NR Sbjct: 195 VATIADMMPLTFFNR 209 >gi|163760326|ref|ZP_02167409.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea phototrophica DFL-43] gi|162282725|gb|EDQ33013.1| probable single-stranded-dna-specific exonuclease protein [Hoeflea phototrophica DFL-43] Length = 152 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 90/149 (60%) Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 MAAGLT+E+V G L FF++ A + V L KIDG L AS V + L DM+E AGP Sbjct: 1 MAAGLTIEKVRLGDLRSFFEEEAADTVAQLDAAHRLKIDGALAASGVTLDLADMIERAGP 60 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSR 561 +GAG+ PVFA PNH L +RVV H+++T D L IAFR T +G L+ R Sbjct: 61 FGAGHSQPVFAVPNHILSDVRVVGQNHVKLTLSGPDGGKLNGIAFRAADTEMGAVLLGGR 120 Query: 562 GKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 G H G + V++W+G +R Q+RV DA+ Sbjct: 121 GLAFHFAGSISVDHWQGVRRVQIRVTDAA 149 >gi|330883133|gb|EGH17282.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 273 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 95/272 (34%), Positives = 146/272 (53%), Gaps = 5/272 (1%) Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARR-QGNPGLKALIERVNISS- 290 +L LLDLVAL +V DVVPL NR V +GLM R + PGL+A++E Sbjct: 3 RAQPNLGELLDLVALGSVADVVPLDANNRILVHQGLMRIRAGRARPGLRAILEVARREPS 62 Query: 291 PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAM 350 IT+ +LG+++GP +NA GR+ + +LG L+ DD +A++LD LNQ+R+ +E M Sbjct: 63 RITSTDLGFILGPRLNAAGRLDDMSLGIECLLCDDPTLAREMAVQLDELNQDRKSIEQGM 122 Query: 351 LEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI 410 +A A++ + + + + + WH G++G+LA+RLKE++ RP+ A + +G Sbjct: 123 QREALAQLKDLPLESMPFGLCLFDAE-WHQGVIGILASRLKERYHRPTIAFASAGEGVLK 181 Query: 411 GSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIV 468 GS RS+ GF I + A ++ K GGHAMAAGL++ NF + F + Sbjct: 182 GSARSVPGFHIRDALDAVAASHPHLISKFGGHAMAAGLSLPEENFPAFAEAFDLEVRRQL 241 Query: 469 PALITTPVFKIDGVLNASAVNIALIDMLESAG 500 T DG L ++ L L +AG Sbjct: 242 DEQDLTGRLLSDGSLAVEEFHLELARALRNAG 273 >gi|150016416|ref|YP_001308670.1| phosphoesterase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902881|gb|ABR33714.1| phosphoesterase, RecJ domain protein [Clostridium beijerinckii NCIMB 8052] Length = 291 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 12/273 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P IL +KA R+ A+ N +KI+++G Y+VDG +V+ ++ L + + + I DR Sbjct: 18 NPFILKGMNKAIERLALAVNNRQKIVVYGTYNVDGICAVSSLILVLRYLNADVEYLIYDR 77 Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 N ++ ++ GA+L+IT+ G S + ++ GID+I++++ + + Sbjct: 78 QEADARINSVDIKNNVDFLGAELLITLGVGLKSKEEVELCKKLGIDLIILENEESD--LV 135 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 Y +NPN+ +L +G+ F ++ I + LDL+ + Sbjct: 136 NDYIYINPNQKGCQYRYKNLSTSGLTFKLMQAIA-------IYYNMKSINKYLDLILIGI 188 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINA 307 VP G N + +G N GL+++IE ++ N+ I P I A Sbjct: 189 QWAKVPSKGENGVLIKEGNKFLMNTNNNGLRSIIEFNSLEEFNNDGINNIIEFIIPPIGA 248 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLN 340 G + + + LL ++D + + L L Sbjct: 249 VGVMDNARIVLELLTTNDKDRADQIVKYLYRLK 281 >gi|312864801|ref|ZP_07725032.1| DHHA1 domain protein [Streptococcus downei F0415] gi|311099928|gb|EFQ58141.1| DHHA1 domain protein [Streptococcus downei F0415] Length = 406 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 10/235 (4%) Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 V+ + WHPG++G++A RL EK +P ++ EDG+ GS RS+E +I + Sbjct: 8 KPAQVLAKEGWHPGVLGIVAGRLLEKLSQPVILLNI-EDGEAKGSARSVEAVNI--FEAL 64 Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 I GGHA AAG+T+ N +L D + + ID L + Sbjct: 65 NPHREIFEAFGGHAGAAGMTLAVENLDQLSDTLCSYILDKGLDQAGKNSLVIDEELQLAD 124 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA--HLQMTFESQDSETLQAIA 545 +++ I LE P+G N PVF N ++ R + HL++ +Q +A Sbjct: 125 LSLETIQSLEKLAPFGMDNRKPVFLLRNFQVLQSRTMGQNGAHLKLKL-AQGGAEFGLVA 183 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 F L + Q+ G + + L VN W G QL ++DA + Sbjct: 184 F--SQGSLAQDFAQASG--LELAVTLSVNKWNGHTSLQLMLVDARVQGVQLIDIR 234 >gi|255652456|ref|ZP_05399358.1| hypothetical protein CdifQCD_19906 [Clostridium difficile QCD-37x79] Length = 566 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 95/493 (19%), Positives = 183/493 (37%), Gaps = 33/493 (6%) Query: 42 IVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDY 101 ++ VL NR + LN I D T+ D+A +++ I N+ KI I D Sbjct: 13 VLNTVLKNRGLDNQKINWLLNADILN-WEDYNNYTNIDRAYNCLLKNIRNNNKIGILVDT 71 Query: 102 DVDGAASVALMMRFLS-HCSVNANMYIPDRIV-DGYGPNPSLMEKFINEGAQLIITVDCG 159 DVDG S +++ F+ + YI +G +M+K I + +L+IT D Sbjct: 72 DVDGYCSSSIIYMFIKFDLQYDNVYYIQHTEKAKVHGLTKEVMDKVIEDNTKLLITPDSS 131 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 S ++ GID I +DHH ++P +++ N+ ++ A V + + Sbjct: 132 SENFKEQIELNRNGIDFIALDHHMYDLTKVPDTSIIINNKDGEV-ENIDGSGAMVTYKFI 190 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 I + D +DL +A + D + + L Y+ NP + Sbjct: 191 RYIVDKVNLDIGY-------KYIDLANVANISDSMDMRSLENRYIFNIGKQVNHITNPLI 243 Query: 280 KALIERVNISSPITAENLGYMIGPSINAGGRIGES------------NLGSRLLISDDSQ 327 + + + I + + +N+ + I P INA R G + S Sbjct: 244 LSFVHDLKIKNYLKIDNVVWGISPIINAIIRNGTIEDKELLFRAFIGEEKTITYKSKGEI 303 Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 + + L + + +N + + + ++A K + ++ VI+++ + + GL+A Sbjct: 304 KKQKLQDAIIRIGKNYKRKQKDITDKAI-KGNVKLFSVENDKVILIDSNSIDAKVTGLVA 362 Query: 388 ARLKEKFGRPSFAI-SFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 + F +P I + GS R D S V+ + GH + G Sbjct: 363 NKFMNVFNKPILMIRESDNKNNYTGSVRCPNYID--NFKSICVDSKLFNWCKGHESSFGY 420 Query: 447 TVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA-VNIALIDMLESAGPYGAG 505 + N + + NI F D +N + + I ++ + + Sbjct: 421 EFPKKNINKFIKYTNDKFKNITITSNVEVDFVFDSNININDLICIGELEDI-----WCGT 475 Query: 506 NPNPVFAFPNHKL 518 P F + ++ Sbjct: 476 IERPKFIIKDLRI 488 >gi|187778358|ref|ZP_02994831.1| hypothetical protein CLOSPO_01950 [Clostridium sporogenes ATCC 15579] gi|187771983|gb|EDU35785.1| hypothetical protein CLOSPO_01950 [Clostridium sporogenes ATCC 15579] Length = 292 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L D+A +RIV+A+ + EKI+++G YD DG A+++L++ Sbjct: 5 VDNLQWYKNPKVN----NPFLLNGMDRALKRIVKAVNHREKIVLYGYYDFDGIAAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSSSEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E+ + + PN HL A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKEKPKSTVIC-PNENSCSYPFKHLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKEENLYIVKEGLESLQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTQKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|237667839|ref|ZP_04527823.1| phosphoesterase, RecJ domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656187|gb|EEP53743.1| phosphoesterase, RecJ domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 292 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 115/275 (41%), Gaps = 12/275 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P IL +KA R+ A+ N +KI+++G Y+VDG +V+ ++ L + + + I DR Sbjct: 18 NPFILKGMNKAIERLALAVNNRQKIVVYGTYNVDGICAVSSLILVLRYLNADVEYLIYDR 77 Query: 131 IV-DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 D + + + GA+L+IT+ G S + + GID+IVI++ + Sbjct: 78 QENDARINSVDIKDNVDFLGAELLITLGVGLKSQEEVDLCKTLGIDLIVIENEISD--TV 135 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 Y +NPN+ L +G+ F ++ I + LDL+ + Sbjct: 136 NDYIYINPNQKGCQYRYKDLSTSGITFKLMQAIA-------IYYNMKSINKYLDLILIGV 188 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSINA 307 G N + +G N GL+++IE +I + + P I A Sbjct: 189 KWSRGSAKGENGILIKEGNKFLMNTNNNGLRSIIEFNDIKEFDDCGVNKIIESLIPPIGA 248 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 G + + LL ++D + L L +N Sbjct: 249 VGITDNARIVLELLTTNDKDRTNQIVKYLYSLKKN 283 >gi|218672850|ref|ZP_03522519.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli GR56] Length = 131 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 81/130 (62%) Query: 464 AHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV 523 A V L+ KIDG + AS + LID LE+AGPYG+G+ P+FA P H+++ R+ Sbjct: 2 AARTVANLVANETLKIDGAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARL 61 Query: 524 VNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 V H+++T E+ D L IAFR T LG L+ SRG +HV G L ++++G++R Q Sbjct: 62 VGEKHVKVTLEAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQ 121 Query: 584 LRVLDASPVE 593 LRV DA+P + Sbjct: 122 LRVCDAAPAK 131 >gi|153939198|ref|YP_001392339.1| DHH domain-containing protein [Clostridium botulinum F str. Langeland] gi|152935094|gb|ABS40592.1| DHH domain protein [Clostridium botulinum F str. Langeland] gi|295320331|gb|ADG00709.1| DHH domain protein [Clostridium botulinum F str. 230613] Length = 292 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L DKA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLEWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRATVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|322382947|ref|ZP_08056779.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153067|gb|EFX45525.1| single-strand DNA-specific exonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 416 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 9/183 (4%) Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGV 482 + +L GGH AAG+T+++ + L A ++ PV + D Sbjct: 1 MYENLTACRELLEHFGGHRSAAGMTIKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAA 60 Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET 540 + V + I+ L+ P+GA NP+P F N +L +R++ H+++ E+ Sbjct: 61 CHLKDVPLGWIEQLQKLEPFGASNPSPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGES 120 Query: 541 ---LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHF 597 ++A+ F + S R+ V G L +N W G +R QL + D E F Sbjct: 121 TVQIEALGFGKAHLS----ELISPTARLDVLGELGINEWNGIRRPQLTLKDLRITEIQLF 176 Query: 598 AKK 600 + Sbjct: 177 DWR 179 >gi|322807362|emb|CBZ04936.1| single-stranded-DNA-specific exonuclease RecJ,clostridial paralog [Clostridium botulinum H04402 065] Length = 292 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L+ DKA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLEWYKNPKVN----NPFLLSGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|170755270|ref|YP_001782696.1| DHH domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120482|gb|ACA44318.1| DHH domain protein [Clostridium botulinum B1 str. Okra] Length = 292 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L DKA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLEWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|148381012|ref|YP_001255553.1| DHH domain protein [Clostridium botulinum A str. ATCC 3502] gi|153932601|ref|YP_001385383.1| DHH domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935172|ref|YP_001388790.1| DHH domain-containing protein [Clostridium botulinum A str. Hall] gi|148290496|emb|CAL84624.1| putative single-stranded-DNA-specific exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152928645|gb|ABS34145.1| DHH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931086|gb|ABS36585.1| DHH domain protein [Clostridium botulinum A str. Hall] Length = 292 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L DKA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLQWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|170760080|ref|YP_001788381.1| DHH domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169407069|gb|ACA55480.1| DHH domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 292 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L +KA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLQWYKNPKVN----NPFLLNGMEKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|168181751|ref|ZP_02616415.1| DHH domain protein [Clostridium botulinum Bf] gi|237796517|ref|YP_002864069.1| DHH domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182675214|gb|EDT87175.1| DHH domain protein [Clostridium botulinum Bf] gi|229262243|gb|ACQ53276.1| DHH domain protein [Clostridium botulinum Ba4 str. 657] Length = 292 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L DKA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLQWYKNPKVN----NPFLLNGMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRSTIICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|145631268|ref|ZP_01787041.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae R3021] gi|144983195|gb|EDJ90690.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae R3021] Length = 174 Score = 140 bits (352), Expect = 7e-31, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R++ L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARHI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 G +S+D + + +GI V+V DHH Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPKLCRQP 167 >gi|168179555|ref|ZP_02614219.1| DHH domain protein [Clostridium botulinum NCTC 2916] gi|226950490|ref|YP_002805581.1| DHH domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|182669867|gb|EDT81843.1| DHH domain protein [Clostridium botulinum NCTC 2916] gi|226842686|gb|ACO85352.1| DHH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 292 Score = 139 bits (351), Expect = 9e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 17/290 (5%) Query: 54 IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMM 113 +D + + NP + +P +L++ DKA +RIV+A+ +KI+++G YD DG ++++L++ Sbjct: 5 VDNLEWYKNPKVN----NPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL 60 Query: 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQ 172 L + + +IPD + + + N + +E I GA LIITV CG S ++ Sbjct: 61 LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL 120 Query: 173 GIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 G+D+I+ D H+ E P ++ PN +L A+G+ + ++ + Sbjct: 121 GMDIIITDWHKCLKE-KPRSTVICPNENSCSYPFKYLSASGIAYKLVEALS-------MY 172 Query: 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVN-ISSP 291 LDLV L T+ + + G N V +GL + N GLKAL+ + Sbjct: 173 YKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDE 232 Query: 292 ITAENLGYMIGPSINAGG---RIGESNLGSRLLISDDSQELEMLAMKLDV 338 I +L + +I + + L + + +A L Sbjct: 233 INLYDLKKLTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKN 282 >gi|219685870|ref|ZP_03540677.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii Far04] gi|219672600|gb|EED29632.1| single-stranded-DNA-specific exonuclease RecJ [Borrelia garinii Far04] Length = 519 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%) Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVV 265 + + + Y I+ + NK L L L VA+ T+ D +P+I NR + Sbjct: 133 YFRYKEVAIKDKLYYIFYNIIFETNKNLLQKCLKR-LSFVAIGTIADNMPIINENRIILK 191 Query: 266 KGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 GL + + L++ NI IT+ ++ Y I P +N+ GR+ ++++ L++ Sbjct: 192 AGLKEIALRERMSINYLLKDANILTKPNITSMDIAYKIAPILNSTGRLEKADIAINFLLA 251 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 DD ++E ++ +N+ R+ E + + IV GI Sbjct: 252 DDINQIENKFKEIKEINELRKYKEEKAWNS-----HNKNTIFKNDKFIVCYDKNTPKGIS 306 Query: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMA 443 LA RL + + + ++ ++ GS RS + K + + +++ GGH A Sbjct: 307 SRLATRLSAYYQKVAIFLTKQD-NIIKGSIRSNNKIN-SKALISTIPSHLIINSGGHKAA 364 Query: 444 AGLTVERVNFGRLCDFFQKFAHNI-VPALITTPVFKIDGVLNASAVNIALIDMLESAGPY 502 AG T+ + + ID ++ + +L +E PY Sbjct: 365 AGFTLNENLLEDFIKELEYATTKVKYETTDENESILIDAIVPKNLTKDSLFKTIEIFEPY 424 Query: 503 GAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 G P+ N LQ ++ ++ H+ M +SQ+ + +AI F GT E L Sbjct: 425 GYEFREPILMMENVYLQELKTIDKNHSSKHINMRIKSQN-DYYKAIFFN--GTKKIEELN 481 Query: 559 QSRGKRMHVTGHLCVNYW 576 + + + + +++ Sbjct: 482 IKENQYLDIIFTINEDFY 499 >gi|145641181|ref|ZP_01796761.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae R3021] gi|145274018|gb|EDK13884.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae 22.4-21] Length = 174 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L D+A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIDQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 G +S+D + + ++GI V+V DHH Sbjct: 135 GVSSFDGVAFLKDKGIRVLVTDHHLPPKLCRQP 167 >gi|255024236|ref|ZP_05296222.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL J1-208] Length = 261 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V++A Sbjct: 1 DLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINLADVSVA 59 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAFRV 548 I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F V Sbjct: 60 FIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGFGV 119 Query: 549 YGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 S + V G L +N W K+ QLR++D F + Sbjct: 120 GDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 167 >gi|167957526|ref|ZP_02544600.1| single-stranded-DNA-specific exonuclease RecJ [candidate division TM7 single-cell isolate TM7c] Length = 283 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 16/294 (5%) Query: 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT 360 +GP +NA GR+ + +L++ D + KL+ LN RR ++ A+ E+A Sbjct: 2 LGPRMNAAGRLETAQHALDMLVARDGLAALEASEKLEELNSKRRGIQDAIFEEA----CV 57 Query: 361 QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD 420 Q + + V+VV D W+ G++G++A++L E++ +P F I + + GS RS D Sbjct: 58 QAEKLANDRVLVVSSDGWNHGVIGIVASKLVERYKKPVFIIGERGE-EATGSARSFG--D 114 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN-IVPALITTPVFKI 479 + + I++KGGGH AAG+T+ G +F + + + + Sbjct: 115 FSAADAVRAADDIIIKGGGHGAAAGVTLATEKIGDFRRRVNEFYDSLQLTNQERYLLPRA 174 Query: 480 DGVLN-ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ 536 D ++ S +N L+D L P+G GNP PV + S+R + H+++ + Sbjct: 175 DVEIDDFSEINEELVDNLAKMEPFGNGNPEPVLKITTASVLSVRRIGADGQHVKLALRDK 234 Query: 537 DSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 + + LQ +AF E + G + VN W+G + + R+L + Sbjct: 235 NGKVLQMLAFNA-----PEEFFREPGDEVVAWFQPTVNEWQGIRSVEGRLLHLA 283 >gi|145627799|ref|ZP_01783600.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.1-21] gi|144979574|gb|EDJ89233.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.1-21] Length = 174 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 5/153 (3%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 ++ R+ R + L+ +++ ++ +P L ++A +V+A +KI+I G Sbjct: 19 HPLLDRLYRARRI---QNTKELDRTLKSML-NPNQLYGIEQAVNLLVEAYQQQQKIVIVG 74 Query: 100 DYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 D+D DGA S AL + L + + +P+R GYG + + E I +G QL++TVD Sbjct: 75 DFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLMTVDN 134 Query: 159 GSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 G +S+D + + +GI V+V DHH Sbjct: 135 GVSSFDGVAFLKEKGIRVLVTDHHLPPKLCRQP 167 >gi|315303284|ref|ZP_07873920.1| single-stranded-DNA-specific exonuclease RecJ [Listeria ivanovii FSL F6-596] gi|313628346|gb|EFR96843.1| single-stranded-DNA-specific exonuclease RecJ [Listeria ivanovii FSL F6-596] Length = 385 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 8/179 (4%) Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + ++ GGH MAAGLT+ N L Q+ A ++ P +I+ +N Sbjct: 1 KALDKHRKLMTAFGGHPMAAGLTLPAENLAELEAKLQEEAS-LLTEEDFRPALQIEERIN 59 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSET-L 541 + V++A I LE P+G NP P+F KL+ + + HL+ + ++T L Sbjct: 60 LADVSVAFIAQLEKLAPFGMDNPKPIFLLEGMKLKGTKRIGADKTHLKTMLGTDGTDTPL 119 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 AI F V S + V G L +N W K+ QLR++D F + Sbjct: 120 DAIGFGVGDL----VEKISPSADVDVVGELSINEWNHIKKPQLRMMDIRIAHWQLFDVR 174 >gi|213861333|ref|ZP_03385803.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 116 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDS 538 DG L+A+ +++ + +L AGP+G P P+F +L R+V HL++ E Sbjct: 8 DGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGG 66 Query: 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 L IAF + T + + + + + L +N +RG++ Q+ + D P+ Sbjct: 67 PLLDGIAFNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 116 >gi|313608668|gb|EFR84510.1| single-stranded-DNA-specific exonuclease RecJ [Listeria monocytogenes FSL F2-208] Length = 380 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 8/174 (4%) Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVN 489 ++ GGH MAAGLT+ N L Q+ A + P KI+ +N + V+ Sbjct: 1 HRDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEAS-FLSEEDFRPALKIEEKINLADVS 59 Query: 490 IALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSE-TLQAIAF 546 +A I LE P+G NP P+F N L+ + + HL+ +++++ TL +I F Sbjct: 60 VAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIGF 119 Query: 547 RVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 V S + V G L +N W K+ QLR++D F + Sbjct: 120 GVGDL----VEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQLFDVR 169 >gi|217031567|ref|ZP_03437072.1| hypothetical protein HPB128_21g125 [Helicobacter pylori B128] gi|216946767|gb|EEC25363.1| hypothetical protein HPB128_21g125 [Helicobacter pylori B128] Length = 290 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 21/299 (7%) Query: 283 IERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 V + A ++ + I P IN+ GR+ ++ + L +++ Q+ L +L N Sbjct: 6 QREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMK 65 Query: 343 RRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAIS 402 R++++ + E+A + +IV D WH G++G++A++L E +PS + Sbjct: 66 RKMIQQQVFEEAFKHAMV------GEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFT 119 Query: 403 FEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQK 462 F+E G GSGRS D+ + + +L+ GGH A GL+V + N L + + Sbjct: 120 FKE-GVYKGSGRSSSNIDL--IDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLEN 176 Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 F I+P P L ++ L++++E+ PYG NP P+F N ++ + Sbjct: 177 FDFKILPFCEKEPPLT----LALKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEK 232 Query: 523 VVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 ++ +H + F+ ++ +AI F G+++ + ++ + + Sbjct: 233 IIKESHQVLRFKDKECVK-EAIYFNTERF-------LKAGEKVSAIFSVELDEYSNEPK 283 >gi|145627797|ref|ZP_01783598.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.1-21] gi|144979572|gb|EDJ89231.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.1-21] Length = 140 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 8/138 (5%) Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518 FF + + + V DG LN++ N+ ++++S G +G G P P F K+ Sbjct: 7 FFNQTVADWLDEEHLQGVIWTDGELNSNEFNLETAELIKSVGTWGQGFPEPCFDGE-FKI 65 Query: 519 QSIRVVN--LAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNY 575 R + HL+M E Q L AIAF + + + K+ + L +N Sbjct: 66 LDQRAIGQNKNHLKMLLEPKQGGVLLDAIAFNINTRLYPDLSI----KQARLAYKLDINE 121 Query: 576 WRGSKRCQLRVLDASPVE 593 +RG++ QL V P++ Sbjct: 122 FRGNRSLQLLVDYIEPID 139 >gi|167957072|ref|ZP_02544146.1| single-stranded-DNA-specific exonuclease RecJ [candidate division TM7 single-cell isolate TM7c] Length = 109 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 45 RVLVNRNVSIDYAKD-FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDV 103 ++LV R ++ A++ FL P + DP +L D +KA R+ QA EKI+I+GDYD+ Sbjct: 6 KILVARGLTTRAAREAFLRPDYAAVKHDPFLLLDMEKAVARLKQARQQGEKIVIYGDYDI 65 Query: 104 DGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEK 144 DG ++ AL++ + + +IP+R V+GYG ++K Sbjct: 66 DGLSATALLLDAFDKFGFEDVDAFIPNRFVEGYGMTMGAVDK 107 >gi|254469690|ref|ZP_05083095.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp. JE062] gi|211961525|gb|EEA96720.1| single-stranded-DNA-specific exonuclease RecJ [Pseudovibrio sp. JE062] Length = 140 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 460 FQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQ 519 + V IDGVL + N++L+DMLE AGPYGA + PVFA P+ ++ Sbjct: 1 MTEQLGEDVEQASADHELTIDGVLTPAGANLSLLDMLEQAGPYGASHAEPVFALPSVPIK 60 Query: 520 SIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS 579 +VV H+ +T D L+AIAF+ P G+ L+QSRGK +H+ G L V+ W+G Sbjct: 61 FSKVVGQGHVSVTLGGNDGTNLKAIAFKAEDQPHGKALLQSRGKPLHIAGSLSVDTWQGQ 120 Query: 580 KRCQLRVLDAS-PVEGH 595 + LR++D + P +G Sbjct: 121 AKPSLRIIDVADPSKGQ 137 >gi|256004892|ref|ZP_05429866.1| phosphoesterase DHHA1 [Clostridium thermocellum DSM 2360] gi|255991202|gb|EEU01310.1| phosphoesterase DHHA1 [Clostridium thermocellum DSM 2360] Length = 445 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 119/260 (45%), Gaps = 16/260 (6%) Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 +A K+D LN R+ ++ +++++A V T+ + +++V+ + WH GI+G+ A R+ Sbjct: 1 MAEKIDSLNTERKRVQQSIVDEAVEMVETRK---KNKTILVLYKEYWHHGIIGIAAGRIC 57 Query: 392 EKFGRPSFAISFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVER 450 E + +P+ S +EDG +GS RSIE +I +++ G L+K GGH+ AAGL++ + Sbjct: 58 ELYRKPAILFSLKEDGITAVGSARSIEEVNIYELIKEC--SGKLLKFGGHSQAAGLSIRK 115 Query: 451 VNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPV 510 + + A N D L +N L D ++SAGPYG G P Sbjct: 116 DDIEEFISQIEMEAENRYFIKDMVN-VNADMELGIEDINEELYDRIQSAGPYGEGFEAPC 174 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAI-AFRVYGTPLGEFLMQSRGKRMHVTG 569 F N + S R+ H M E Q + A+ F + G+ VT Sbjct: 175 FCIRNVIVLSDRMTEKKHHIMVLEDQKGNRIPAVKWFGEDES--------FEGRCFDVTC 226 Query: 570 HLCVNYWRGSKRCQLRVLDA 589 + N + QL + Sbjct: 227 RIGRNNYSKDAGIQLTLEYM 246 >gi|187933615|ref|YP_001885228.1| DHH domain protein [Clostridium botulinum B str. Eklund 17B] gi|187721768|gb|ACD22989.1| DHH domain protein [Clostridium botulinum B str. Eklund 17B] Length = 287 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 12/275 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P IL +KA R+V A+ N +KI+++G +VDG + A ++ L + + + I D Sbjct: 18 NPFILKGMNKALERVVSAVNNRKKIIVYGTSNVDGICATASLILVLKYLNADVEYLIYDE 77 Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 G N ++ ++ GA+L+IT+ G S + + GI++IV+++ + + I Sbjct: 78 ENGGDKLNSKDIKNNVDFLGAELLITLGLGLESQEEIDLCKKLGINLIVLENKES--KFI 135 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 Y +NPN+ L + + F ++ I + LDL+ + Sbjct: 136 DEYIYINPNQKGCQYRYKDLSISALTFKLMQSIA-------IYYNMKSINKYLDLILMGV 188 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY--MIGPSINA 307 P+ G N ++ +G N GL++++E NI I P+I Sbjct: 189 KFINTPIKGENGVFIKEGNKFLFNTNNNGLRSVMEFNNIMECDCYAMDSMIEFITPTIGP 248 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 G + + + LL +DD + + L +N Sbjct: 249 VGIMDNARIVLELLTTDDKDRADQIVKYLYSSKKN 283 >gi|325923456|ref|ZP_08185113.1| single-stranded DNA-specific exonuclease [Xanthomonas gardneri ATCC 19865] gi|325546064|gb|EGD17261.1| single-stranded DNA-specific exonuclease [Xanthomonas gardneri ATCC 19865] Length = 169 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 9/171 (5%) Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVL 483 A G++ K GGHAMAAGL+++ F+ ++V A + DG L Sbjct: 4 AAVDARHPGLIQKFGGHAMAAGLSMDHAALATFEQAFRSQVQSMVDASLLHAELHSDGEL 63 Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDS-ETLQ 542 A ++ + L AGP+G G P P+F ++ RV+ HL++T E L Sbjct: 64 AAHELDHLHAEALRVAGPWGQGFPEPLFDGR-FEVLQCRVLKERHLKLTLRCAGRAEPLN 122 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 AI F + G+ + + L + +RG QL V P Sbjct: 123 AIHFNGWRG-------SEPGRMVRLAYRLVSDDYRGGTAVQLIVEHCEPAT 166 >gi|289803791|ref|ZP_06534420.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 106 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 483 LNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETL 541 L+A+ +++ + +L AGP+G P P+F +L R+V HL++ E L Sbjct: 1 LSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLL 59 Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 IAF + T + + + + + L +N +RG++ Q+ + D P+ Sbjct: 60 DGIAFNIDTTCWPD----NGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 106 >gi|291533807|emb|CBL06920.1| hypothetical protein MHY_22920 [Megamonas hypermegale ART12/1] Length = 209 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 8/168 (4%) Query: 425 VSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLN 484 + E L+ GGH+ AAG T++ Q +A+ + P+++++ VL Sbjct: 3 NALTYCEQDLMVYGGHSKAAGFTIDLAKLDDFISHMQTYANEHLTDEDLIPIYQVETVLT 62 Query: 485 ASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQ 542 + + I+ L P+G GNP P F N + + HL+ F ++ Sbjct: 63 PQDITMDFIEELSLLEPFGMGNPKPQFVCQNLLVTKSMKMGKENNHLRFNFAY-NNTQYT 121 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 AI + + K + + +N+W Q ++ D Sbjct: 122 AIGWHMAD-----VADDINNKYVDILFQPELNHWNDHTYLQFKLSDLR 164 >gi|149183951|ref|ZP_01862331.1| hypothetical protein BSG1_19060 [Bacillus sp. SG-1] gi|148848337|gb|EDL62607.1| hypothetical protein BSG1_19060 [Bacillus sp. SG-1] Length = 344 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 7/140 (5%) Query: 463 FAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIR 522 FA + P+ ++D +N V+I I+ LE P+G GNP P + +R Sbjct: 2 FAEEQLTEEDFIPLTELDASINLEEVDIETIESLEMLAPFGMGNPKPKLLIEGVSISGMR 61 Query: 523 VVNLA--HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSK 580 + HL+++ + +D TL +I F + S + V G L +N W + Sbjct: 62 KIGGNQDHLKLSLQ-KDVYTLDSIGFGMGEF----ADHISPLSEISVIGELSINEWNNIR 116 Query: 581 RCQLRVLDASPVEGHHFAKK 600 + QL + D + F + Sbjct: 117 KPQLFLKDVTVDHWQLFDMR 136 >gi|1783377|gb|AAB41138.1| RecJ recombination protein [Chlamydophila caviae] Length = 268 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 7/245 (2%) Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA 388 + + LD +N+ R+ +E+ + K+L +I + + IV+ + WH ++ +++A Sbjct: 1 ADEIIQYLDKINRERQKIEADVFHDV-QKILKNKPEIVKQAAIVLSSNDWHARVIPIISA 59 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448 RL + + +P IS + G G GS R+I F + ++ + + GGH AAG+ + Sbjct: 60 RLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQKC--SSLFISYGGHDFAAGIII 116 Query: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 F ++ + +D + ++ L+ ++ P+G GNP Sbjct: 117 NEDQVEAFRKKFIHLVNSSLKKDKAVLTLPLDAQADFDEIDHDLLSSIDLFEPFGKGNPM 176 Query: 509 PVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVT 568 PVF H+++ +++ HL++ + L+ IAF + E L + K + + Sbjct: 177 PVFYTIVHQVRYPKLLPGNHLKLYL-NHGERNLEGIAFGLGDRI--EALKANWNKPLELA 233 Query: 569 GHLCV 573 + Sbjct: 234 YTPRL 238 >gi|254518559|ref|ZP_05130615.1| phosphoesterase domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226912308|gb|EEH97509.1| phosphoesterase domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 288 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 11/273 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P IL + +KA +V+AI N +KI+I+G +VDG +++ ++ L + + + I D Sbjct: 23 NPFILKNMNKAIEHMVEAINNRKKIVIYGVPNVDGLCAISSLILVLKYLNADIEYIIHDE 82 Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 + + G QL+IT+ +S + + GID+IV+++ +V +E Sbjct: 83 ASSSGIISEDIKNNVSFLGGQLLITLGIDLSSEREEELCRDLGIDLIVLENKEVNNER-- 140 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 Y +NPN+ +L +G+ F ++ I + LDL+ + Sbjct: 141 NYIYINPNQKGCQYRYKNLSISGLTFKLMQAIA-------IYYNIKSINKYLDLILIGEQ 193 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM--IGPSINAG 308 VPL G N + +G N GL++++ +I L + I P+INA Sbjct: 194 WAEVPLKGENGVILKEGRKFLINTNNYGLRSIMNYYSIVEMDEECILKIIDVITPTINAV 253 Query: 309 GRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 + + + LL + E + L+ Sbjct: 254 TMMDNARIIIELLTTTKKDRAEQITKYLNKSKM 286 >gi|18310922|ref|NP_562856.1| DHH domain protein [Clostridium perfringens str. 13] gi|18145604|dbj|BAB81646.1| hypothetical protein [Clostridium perfringens str. 13] Length = 284 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 13/272 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P + + +KA R+ AI N EKI+I+G D+D +++ +M L + + + + Sbjct: 18 SPFNIKNMNKAIERLASAINNREKIVIYGGCDLDSICAISSLMLILKYLNADVEYCVSSE 77 Query: 131 IVD-GYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 + Y + E GA+L+ITV CG + + ID+I++++ + + Sbjct: 78 HEEKNYDIDEYTLREDIAFLGAELLITVGCGLKNKEVENLCNRFNIDLIIMENKRT--KC 135 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 I +NP+ L +G+ F ++ I + LDL+ + Sbjct: 136 IYDSTYINPSEEKCSYRYKDLTNSGLTFKLMQAIA-------IYYNMKRINKYLDLILIG 188 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306 +V V G N + +G+ R + GL A+ NIS + I P Sbjct: 189 SVSKNVKNKGENGIILKEGIQYLRYTNSIGLNAIKSFFNISDINIDSINKIVNEITPREG 248 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 A + + + LL ++D E + + Sbjct: 249 AISKKDNAKIVVELLTTNDKDRAEQITKYIYN 280 >gi|110800381|ref|YP_696619.1| DHH domain-containing protein [Clostridium perfringens ATCC 13124] gi|168204877|ref|ZP_02630882.1| DHH domain protein [Clostridium perfringens E str. JGS1987] gi|168208640|ref|ZP_02634265.1| DHH domain protein [Clostridium perfringens B str. ATCC 3626] gi|168214140|ref|ZP_02639765.1| DHH domain protein [Clostridium perfringens CPE str. F4969] gi|168215565|ref|ZP_02641190.1| DHH domain protein [Clostridium perfringens NCTC 8239] gi|169343786|ref|ZP_02864785.1| DHH domain protein [Clostridium perfringens C str. JGS1495] gi|182624418|ref|ZP_02952202.1| DHH domain protein [Clostridium perfringens D str. JGS1721] gi|110675028|gb|ABG84015.1| DHH domain protein [Clostridium perfringens ATCC 13124] gi|169298346|gb|EDS80436.1| DHH domain protein [Clostridium perfringens C str. JGS1495] gi|170663580|gb|EDT16263.1| DHH domain protein [Clostridium perfringens E str. JGS1987] gi|170713121|gb|EDT25303.1| DHH domain protein [Clostridium perfringens B str. ATCC 3626] gi|170714374|gb|EDT26556.1| DHH domain protein [Clostridium perfringens CPE str. F4969] gi|177910421|gb|EDT72798.1| DHH domain protein [Clostridium perfringens D str. JGS1721] gi|182382118|gb|EDT79597.1| DHH domain protein [Clostridium perfringens NCTC 8239] Length = 284 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 109/272 (40%), Gaps = 13/272 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P + + +KA R+ AI N EKI+I+G D+D +++ +M L + + + + Sbjct: 18 SPFNIKNMNKAIERLASAINNREKIVIYGGCDLDSICAISSLMLILKYLNADVEYCVSSE 77 Query: 131 IVD-GYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 + Y + E GA+L+ITV CG + + ID+I++++ + + Sbjct: 78 HEEKNYDIDEYTLREDIAFLGAELLITVGCGLKNKEVENLCNRFNIDLIIMENKRT--KC 135 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 I +NP+ L +G+ F ++ I + LDL+ + Sbjct: 136 IYDSTYINPSEEKCSYRYKDLTNSGLTFKLMQAIA-------IYYNMKRINKYLDLILIG 188 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306 +V V G N + +G+ R + GL A+ NIS + I P Sbjct: 189 SVSKNVKNKGENGIILKEGIQYLRYTNSIGLNAIKSFFNISDINIDSINKIVNEITPREG 248 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 A + + + LL ++D E + + Sbjct: 249 AISKKDNAKIIVELLTTNDKDRAEQITKYIYN 280 >gi|309807695|ref|ZP_07701634.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308169069|gb|EFO71148.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 111 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 22 LGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF-LNPSIRLLMPDPLILTDCDK 80 ++ + + K+ + I A++ R ++ D DF LN L DP ++ D +K Sbjct: 4 KKKQAESLDKDLIAKYKLSPIQAKLFAIRGINTDQQLDFWLNADESKL-ADPFLMHDMEK 62 Query: 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 RI QAI EKI ++GDYD DG + ++M+ LS + + Sbjct: 63 TVDRINQAIDKGEKITVYGDYDADGITATSIMVETLSILGADVVFF 108 >gi|110803606|ref|YP_699216.1| DHH domain-containing protein [Clostridium perfringens SM101] gi|110684107|gb|ABG87477.1| DHH domain protein [Clostridium perfringens SM101] Length = 284 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 109/272 (40%), Gaps = 13/272 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 P + + +KA R+ AI N EKI+I+G D+D +++ +M L + + + + Sbjct: 18 SPFNIKNMNKAIERLASAINNREKIVIYGGCDLDSICAISSLMLILKYLNADVEYCVSSE 77 Query: 131 IVD-GYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 + Y + E GA+L+ITV CG + + ID+I++++ + + Sbjct: 78 HEEKNYDIDEYTLREDIAFLGAELLITVGCGLKNKEVENLCNRFNIDLIIMENKRT--KC 135 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 I +NP+ L +G+ F ++ I + LDL+ + Sbjct: 136 IYDSTYINPSEEKCSYRYKDLTNSGLTFKLMQAIA-------IYYNMKRINKYLDLILIG 188 Query: 249 TVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE--NLGYMIGPSIN 306 +V V G N + +G+ R + GL A+ +IS + I P Sbjct: 189 SVSKNVKNKGENGIILKEGIQYLRYTNSIGLNAIKSFFDISDINIDSINKIVNEITPREG 248 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDV 338 A + + + LL ++D E + + Sbjct: 249 AISKKDNAKIVVELLTTNDKDRAEQITKYIYN 280 >gi|188590091|ref|YP_001920358.1| DHH domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188500372|gb|ACD53508.1| DHH domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 287 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 12/275 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P IL +KA ++V A+ N +KI+I+G +VDG + A ++ L + + + I D Sbjct: 18 NPFILKGMNKALEKVVSAVNNRKKIIIYGTSNVDGICATASLILVLKYLNADVEYLIYDE 77 Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 N ++ ++ GA+L+IT+ G S + + GI++IV+++ + + I Sbjct: 78 ENGRDKLNSKDIKNNVDFLGAELLITLGLGLESQEEIDLCEKLGINLIVLENKES--KFI 135 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 Y +NPN+ L + + F ++ I + LDL+ + Sbjct: 136 DEYIYINPNQKGCQYRYKDLSISALTFKLMQSIA-------IYYNMKSINKYLDLILMGV 188 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINA 307 P+ G N ++ +G N GL++++E NI +++ I P+I Sbjct: 189 KFIDTPIKGENGVFIKEGNKFLFNTNNNGLRSVMEFNNIMECDCHAMDSMIEFITPTIGP 248 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 G + + + LL +DD + + L +N Sbjct: 249 VGIMDNARIVLELLTTDDKDRADQIVKYLYSSKKN 283 >gi|270618970|ref|ZP_06221784.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] gi|270317888|gb|EFA29219.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] Length = 154 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 1/123 (0%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGY 135 D+A +V+A +KI+I GD+D DGA S AL + L + + +P+R GY Sbjct: 2 GIDQAVNLLVEAYQQQQKIVIVGDFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGY 61 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 G + + E I +G QL++TVD G +S++ + + +GI V+V DHH PA A+V Sbjct: 62 GLSIPVAEMAIEKGVQLLMTVDNGVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIV 121 Query: 196 NPN 198 NPN Sbjct: 122 NPN 124 >gi|290954338|ref|ZP_06558959.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica URFT1] gi|295312225|ref|ZP_06803024.1| single-stranded-DNA-specific exonuclease [Francisella tularensis subsp. holarctica URFT1] Length = 197 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 9/178 (5%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 A+++ R I+ + LN SI+ L P + D +KA R+ QA+ N+E I + Sbjct: 20 GYDSFTAKIISARVRKIENLELILNGSIKDL-SSPFLFKDIEKAVERLYQAVQNNEIIGL 78 Query: 98 FGDYDVDGAASVALMMRFL-SHCSV---NANMYIPDRIVDGYGPNPSLMEKFI--NEGAQ 151 D+D DG S A++ L YI R+ +GYG + SLM + + Sbjct: 79 ETDHDCDGQTSHAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPS 138 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA--YALVNPNRLDDLSGQG 207 LIIT D GST + GID I+ DHH + E P A++NP + Sbjct: 139 LIITADNGSTDEPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDK 196 >gi|251779361|ref|ZP_04822281.1| DHH domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083676|gb|EES49566.1| DHH domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 287 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 119/275 (43%), Gaps = 12/275 (4%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +P IL +KA ++V A+ N +KI+I+G +VDG + A ++ L + + + I D Sbjct: 18 NPFILKGMNKALEKVVSAVNNRKKIIIYGTSNVDGICATASLILVLKYLNADVEYLIYDE 77 Query: 131 IVDGYGPNPSLMEKFINE-GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 N ++ ++ GA+L+IT+ G S + + GI++IV+++ + + I Sbjct: 78 ENGRDKLNSKDIKNNVDFLGAELLITLGLGLESQEEIDLCEKLGINLIVLENKES--KFI 135 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 Y +NPN+ L + + F ++ I + LDL+ + Sbjct: 136 DEYIYINPNQKGCQYRYKDLSISALTFKLMQSIA-------IYYNMKSINKYLDLILMGV 188 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSP-ITAENLGYMI-GPSINA 307 P+ G N ++ +G N GL++++E NI A + P+I Sbjct: 189 KFIDTPIKGENGVFIKEGNKFLFNTNNNGLRSVMEFNNIMECDFHAMDSMIEFITPTIGP 248 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN 342 G + + + LL +DD + + L +N Sbjct: 249 VGIMDNARIVLELLTTDDKDRADQIVKYLYSSKKN 283 >gi|86651823|gb|ABD14428.1| RecJ [Anaplasma centrale] Length = 135 Score = 126 bits (317), Expect = 8e-27, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHK 517 + F V G+L A AVN L L+ P+G GNP P F N + Sbjct: 3 EALYSFFLERFKHSDIQKVSYACGILTAGAVNFPLWRELQMLEPFGPGNPEPRFILKNVE 62 Query: 518 LQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWR 577 ++ V+ +H++ S D+ ++ + F+ GT G L+Q RG+ +H+ G + VN WR Sbjct: 63 IRKPEVMGGSHVRC-LISGDNALVKGVCFKCIGTEQGTTLLQ-RGRCVHLLGKISVNQWR 120 Query: 578 GSKRCQLRVLDAS 590 G++ Q + DA+ Sbjct: 121 GNEYVQFVMDDAA 133 >gi|330720704|gb|EGG98939.1| Single-stranded-DNA-specific exonuclease RecJ [gamma proteobacterium IMCC2047] Length = 121 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 468 VPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLA 527 + + DG L ++ L L AGP+G G P+F + R+V Sbjct: 1 MNEDALQAELQTDGALLGRECSMELAYALNQAGPWGQGFVQPMFEGE-FAISQQRLVGEK 59 Query: 528 HLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 HL++ + ++ AIAF + + +R+ + L +N +RG++ QL V Sbjct: 60 HLKLQLVDEKSGQSHDAIAFFIDLEVWP-----NEARRVKLVYKLDINRFRGNESLQLMV 114 Query: 587 LDASPV 592 P+ Sbjct: 115 EHLQPL 120 >gi|261883734|ref|ZP_06007773.1| YrvE [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 113 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRN-VSIDYAKDFLNPSIRLLMPDP 72 S RW E + IP I A++L +R V A+ FL+ L DP Sbjct: 4 SKKRWRIQRPDE--AVIERLANGLNIPVISAKILASRGLVDPKAARSFLHMDDSSLH-DP 60 Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSH 118 ++ D D A R I Q+I EKI+I+GDYD DG SV++++R L+ Sbjct: 61 YLMKDMDIAVRMIKQSIMEGEKILIYGDYDADGVTSVSVLLRALTR 106 >gi|329733227|gb|EGG69564.1| single-stranded-DNA-specific exonuclease RecJ family protein [Staphylococcus aureus subsp. aureus 21193] Length = 388 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 9/204 (4%) Query: 399 FAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCD 458 I + + G + + + + ++ K GGH MAAG+T++ N L + Sbjct: 3 TLILNIDREQNHAKGSARSIDQVSMFEILSAHQELIAKFGGHHMAAGMTMDIENIESLAE 62 Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518 K+ + PV ++D +L + + I I + P+G P+F + + Sbjct: 63 GLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIRDMNRLRPFGTDFSRPIFEMDDLSV 122 Query: 519 QSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 S++ + HL++T + L F G E + + +++ G + +N W Sbjct: 123 SSVKAIGQQKNHLKLTLGESNIAAL----FWQNGHLEPELQDE---QPINILGSVQINEW 175 Query: 577 RGSKRCQLRVLDASPVEGHHFAKK 600 G++ Q+ + D + E + Sbjct: 176 NGNQSPQIIIQDIAMNEQQILDYR 199 >gi|270671933|ref|ZP_06222630.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] gi|270316527|gb|EFA28378.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] Length = 144 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 96 MIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 MI GD+D DGA S AL + L + + +P+R GYG + + E I +G QL++ Sbjct: 1 MIVGDFDADGATSTALSVLALRQLGFSDVDYLVPNRFEQGYGLSIPVAEMAIEKGVQLLM 60 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 TVD G +S++ + + +GI V+V DHH PA A+VNPN L GV Sbjct: 61 TVDNGVSSFEGIAFLKEKGIRVLVTDHHLPPETLPPADAIVNPNLSQCHFPSKSLAGVGV 120 Query: 215 VFLVLVLIYRILRQDNKVP 233 F +++ + R+ Sbjct: 121 AFYLMLAVRAKFRELGIFT 139 >gi|218670431|ref|ZP_03520102.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli GR56] Length = 247 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 139/237 (58%), Positives = 174/237 (73%), Gaps = 1/237 (0%) Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 + + I+ GA+LI+TVDCGSTS++AL A + IDV+VIDHHQV E P +ALVNPNR D Sbjct: 2 INQLIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQVTHELPPCHALVNPNRED 61 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP-LNFDLLSLLDLVALATVCDVVPLIGLN 260 DLSGQGHLCAAGVVF+VLV R+LR L DLL LD+VALATVCDVVPL GLN Sbjct: 62 DLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRILAIDLLQWLDIVALATVCDVVPLKGLN 121 Query: 261 RAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRL 320 RAYVVKGL+ AR Q N GL AL + ++ P+T + G++IGP INAGGRIG++ LGSRL Sbjct: 122 RAYVVKGLVAARHQSNAGLAALFRKAGLAGPVTPYHFGFLIGPRINAGGRIGDAALGSRL 181 Query: 321 LISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR 377 L DD+ E EM+A +LD LN+ R+ ME+ ML++AEA+ L + D + ASVIV + Sbjct: 182 LTLDDAGEAEMIAQRLDELNRERQAMEALMLQEAEAEALAEYGDGEGASVIVTAHEN 238 >gi|260889846|ref|ZP_05901109.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] gi|260860452|gb|EEX74952.1| single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] Length = 296 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 18/305 (5%) Query: 290 SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESA 349 IT ++G+ I P NA GRI S I +D +L + ++ N+ RR +E+ Sbjct: 6 RNITTSDIGFFIAPIFNALGRIDNSKSVVNFFIQEDDFKLFSIIEEMKRANKIRRYLENE 65 Query: 350 MLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKG 409 + + E K+ +++ I ++ +WH G++G++ +R+ K+ P IS ++G G Sbjct: 66 IYNELEEKIQR----LERPKYIFMKSRKWHSGVIGVVCSRISIKYNIPVILISI-KNGYG 120 Query: 410 IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 S RSIEG +I ++ L + GGH +AAG V G + ++ I Sbjct: 121 KASCRSIEGINIFDILKSV--SDKLERFGGHDLAAGFLVSEKYLGEIEKHLRQRLA-IKN 177 Query: 470 ALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHL 529 +D LN +N + + P+G N P F + ++ + + Sbjct: 178 RENVQKTLHVDAWLNIEYLNKRKLHEINRLSPFGLDNQEPNFMDSDVSFLNLTKFGINNR 237 Query: 530 QMT-FESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR---CQLR 585 F +++ + I + + K+ + ++ +L+ Sbjct: 238 HFKGFVRKNNRIISVIGYNLGHKLKAN---NFYKKKFKIVYTP---IFKSGHSDLFIELK 291 Query: 586 VLDAS 590 + D Sbjct: 292 IKDFK 296 >gi|149002292|ref|ZP_01827234.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP14-BS69] gi|147759607|gb|EDK66598.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP14-BS69] Length = 305 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVV- 524 V +D L+ A+++ + E P+G N P+F N +++S R + Sbjct: 2 KKVADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKPIFYIKNFQVESARTMG 61 Query: 525 -NLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 AHL++ S+ + + +AF S+ K + + L VN W G Q Sbjct: 62 AGNAHLKLKI-SKGEASFEVVAFGQGRW----ATEFSQTKNLELAVKLSVNQWNGQTALQ 116 Query: 584 LRVLDASPVEG-HHFAKK 600 L ++DA VEG F + Sbjct: 117 LMMVDAR-VEGVQLFNIR 133 >gi|37522845|ref|NP_926222.1| hypothetical protein glr3276 [Gloeobacter violaceus PCC 7421] gi|35213847|dbj|BAC91217.1| glr3276 [Gloeobacter violaceus PCC 7421] Length = 662 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 107/593 (18%), Positives = 176/593 (29%), Gaps = 95/593 (16%) Query: 17 RWVSLLGQEGI-NRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLI 74 RW + A+ ++ AR L + + A+ FL P L P Sbjct: 4 RWNPQPTPSHLHPEVRALVGEYG-----ARALGSLGIGDPQSARAFLWPERSPLGHCP-T 57 Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVD---GAASVALMMRFLSHCSVNANMYIPDRI 131 + ++AA+ I Q I + I + D A + L+ L Sbjct: 58 WPELERAAQWIAQTISEGKSITLQT---ADRFESAVAALLLQEALREAG----------- 103 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 +++ L+I V A G I I+ + Sbjct: 104 -----TELTVVAGAQPVAQSLLIAVGS--------MPAAPPGCRTIAIEAR-LGEASGEG 149 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +N +L L A V ++++ + L Q N+ P LL +A + Sbjct: 150 LVALNALQLALDHPLRFLPEAAVAWMLVEAL---LGQLNRQPPPDRWADLLLAGCVAGLV 206 Query: 252 DVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRI 311 + R V+ GL +P L ALI + + ++A G Sbjct: 207 SLAHC----RPQVLAGLAQDGGGSHPLLAALISSHRRQI--------FKMAAPLDALGAR 254 Query: 312 GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + L + E A V+ E + + +Q V Sbjct: 255 ATAWLAGESDGGWEPLWREHEARIARVVQ--------------EGALAIESLGLQSQGVA 300 Query: 372 VVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEE-DGKGIGSGRSIEGFDIGKMVSFAVE 430 V+ W + L AARL ++G I+ E + GSG + EG D+ + + A Sbjct: 301 VLARVHWPRQALSLAAARLAGRYGLAVVLIACPEAEALAHGSGYAPEGTDL--IAALAAL 358 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPV--FKIDGVLNAS-- 486 + V+ GG A L E L + V P ID Sbjct: 359 RPLWVEAGGRPEAVRLVCESRWVAALQRELGREIARRVARERLEPPVAIAIDAETTLDLP 418 Query: 487 -AVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIA 545 ++ A LE P+G G P P A N++ Q + HL+ + Sbjct: 419 AELDRAF-HELERLAPFGPGRPRPRVAVRNYRPQWTLSRDGRHLECKIGPRTLRLRDG-- 475 Query: 546 FRVYGTPLGEFLMQSRGKRMHVTGHL---CVNYWRGSKRCQLRVLDASPVEGH 595 E + M + + N W G + P E Sbjct: 476 -------AEERARRQEAGLMELIFEMEPWEANLWWGR------LHAVQPAEAR 515 >gi|255018741|ref|ZP_05290867.1| hypothetical protein LmonF_15316 [Listeria monocytogenes FSL F2-515] Length = 223 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 479 IDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQ 536 I+ + + V++A I LE P+G NP P+F N L+ + + HL+ ++ Sbjct: 1 IEEKIKLADVSVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATE 60 Query: 537 DSE-TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 +++ TL +I F V S + V G L +N W K+ QLR++D Sbjct: 61 ENDATLDSIGFGVGDL----VDKISPTAAVDVVGELSINEWNNVKKPQLRMMDIHISHWQ 116 Query: 596 HFAKK 600 F + Sbjct: 117 LFDVR 121 >gi|330874873|gb|EGH09022.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 94 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Query: 495 MLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQ-DSETLQAIAFRVYGTPL 553 L +AGP+G P P+F +L RVV HL+M +++ S L IAF V Sbjct: 1 ALRNAGPWGQHFPEPLFHG-VFQLVEQRVVGERHLKMVLKTECGSVKLDGIAFGVDR--- 56 Query: 554 GEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + + + + L +N +RG++ QL V+ +P Sbjct: 57 -DIWPNPNIRWVELAYKLDLNEFRGNETVQLMVVHIAP 93 >gi|226323922|ref|ZP_03799440.1| hypothetical protein COPCOM_01699 [Coprococcus comes ATCC 27758] gi|225207471|gb|EEG89825.1| hypothetical protein COPCOM_01699 [Coprococcus comes ATCC 27758] Length = 181 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 17/171 (9%) Query: 432 GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIA 491 +L K GGH MAAGL++ N + + + + ID L VN Sbjct: 10 HLLSKFGGHKMAAGLSMPEENLEQFRKEINE--KSGITPEDLNEKIAIDMQLPFECVNEK 67 Query: 492 LIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFRVY 549 I L P+G GN PVFA +++S R++ L++ + + A+ F Sbjct: 68 FIGELAVLEPFGKGNARPVFAERQVQVESARILGKNKNVLKLQVKDLHGTRMDAMYFGDV 127 Query: 550 GTPLG-----------EFLMQSRGKRMHVT--GHLCVNYWRGSKRCQLRVL 587 T + E L++ G + + + +N ++G + Q+ + Sbjct: 128 NTFVEYVREKFGDIACECLLRGHGHGIVMAFTYYPDINEYQGVRTPQIVIQ 178 >gi|144897463|emb|CAM74327.1| Single-stranded-DNA-specific exonuclease [Magnetospirillum gryphiswaldense MSR-1] Length = 95 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 52/94 (55%) Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLM 558 GP+GAGN P FA ++ VV H+++ +S + L+AIAFR + +G L+ Sbjct: 1 MGPFGAGNREPRFAVTGARVVKADVVGSGHIRIIAQSAGGQRLKAIAFRAADSEMGLTLL 60 Query: 559 QSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +G+ H+ G L V+ W+G+ QL + DA+ Sbjct: 61 GGQGRTFHLAGTLRVDSWQGNNSVQLIIDDAAAA 94 >gi|256752578|ref|ZP_05493432.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter ethanolicus CCSD1] gi|256748516|gb|EEU61566.1| single-stranded-DNA-specific exonuclease RecJ [Thermoanaerobacter ethanolicus CCSD1] Length = 108 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLIL 75 +RW+ + + + + + +P I+A +L R +++ K FLNP ++ L P +L Sbjct: 9 YRWILKENK-DSRLSEEVQKTYGLPKIIADMLSAR-LNLQEVKSFLNPDLKDLY-SPYLL 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 +A I Q I + + I I+GDYDVDG + +++ L Sbjct: 66 RGIKEAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLK 107 >gi|297521588|ref|ZP_06939974.1| ssDNA exonuclease RecJ [Escherichia coli OP50] Length = 95 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTP 552 +L AGP+G P P+F + +L R+V HL++ E L IAF V Sbjct: 1 QLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 59 Query: 553 LGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + + + L +N +RG++ Q+ + + P+ Sbjct: 60 WPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 95 >gi|145627798|ref|ZP_01783599.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.1-21] gi|144979573|gb|EDJ89232.1| single-stranded-DNA-specific exonuclease [Haemophilus influenzae 22.1-21] Length = 254 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 7/254 (2%) Query: 214 VVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 + F +++ + R+ + LLDLVAL T+ DVVPL NR +GLM Sbjct: 1 MAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLVALGTIADVVPLDQNNRILAYQGLMRI 60 Query: 272 RRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 R + G+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + Sbjct: 61 RARHCRLGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKA 120 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAA 388 LA+ LD LNQ R+ +E+ M +A ++ I + WH G++G++++ Sbjct: 121 RELALDLDQLNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSS 180 Query: 389 RLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGL 446 R+K+++ RP A + + +G GS RSIEG + ++ +++K GGHAMAAGL Sbjct: 181 RIKDQYHRPVIAFAQDSEGILKGSARSIEGLHMRDVLERIHSQHPNMILKFGGHAMAAGL 240 Query: 447 TVERVNFGRLCDFF 460 ++ F F Sbjct: 241 SIREEYFADFQHIF 254 >gi|332686622|ref|YP_004456396.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus plutonius ATCC 35311] gi|332370631|dbj|BAK21587.1| single-stranded-DNA-specific exonuclease RecJ [Melissococcus plutonius ATCC 35311] Length = 155 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%) Query: 442 MAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 MAAGLT+ N L + L ID + + V++ALI L+ P Sbjct: 1 MAAGLTLSVENIILLKGYLFYCMKQQTINLDEKQEILIDMPIPVAEVSLALIKRLQLLAP 60 Query: 502 YGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQ 559 +G N P+F F + +Q+++ + +L+ + + L AIAF +G+ + Sbjct: 61 FGTKNAAPLFLFQDSMIQNVQQIGVNNNYLKFQLKDKQ-LVLDAIAF-----QMGKDKDE 114 Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK 600 ++ + G L +N WRG+ + Q+ V D F + Sbjct: 115 FSNTQVTIVGKLGINEWRGNCKPQVLVTDFMVKNAQLFDLR 155 >gi|330683922|gb|EGG95690.1| conserved domain protein [Staphylococcus epidermidis VCU121] Length = 340 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%) Query: 448 VERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNP 507 ++ N L D ++ + P KID +L+ S + I I ++ P+G Sbjct: 1 MDIDNVEALRDGLNEWMARLSETTSLEPSKKIDVLLDESDITIKNIKDIQKLRPFGTDFN 60 Query: 508 NPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRM 565 +P+F N + S++ + HL+MT TL A+ + G+ + Sbjct: 61 SPLFEIQNMTINSLKAIGKEQNHLKMTLGD---STLPALFW----QNGAYATQLDNGQTV 113 Query: 566 HVTGHLCVNYWRGSKRCQLRVLDAS 590 ++ G+L +N W G++ Q V D + Sbjct: 114 NLIGNLQINEWNGNQTPQFIVQDIA 138 >gi|305432544|ref|ZP_07401705.1| single-stranded-DNA-specific exonuclease [Campylobacter coli JV20] gi|304444255|gb|EFM36907.1| single-stranded-DNA-specific exonuclease [Campylobacter coli JV20] Length = 131 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 10/130 (7%) Query: 43 VARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYD 102 + ++L +R + L+ + L P P L D KAA RI +AI +EKI I GDYD Sbjct: 9 IRKILASR------FEKDLHTKLCDL-PLPCCLKDIYKAANRIKEAIDKNEKIAIVGDYD 61 Query: 103 VDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 VDG S +M F + + IP+R DGYG N ++ + LIITVD G + Sbjct: 62 VDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAA 118 Query: 163 YDALQYATNQ 172 ++A + + Sbjct: 119 FEAAKLCKEK 128 >gi|221316434|ref|ZP_03598239.1| hypothetical protein BsubsN3_22235 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 233 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 18/247 (7%) Query: 29 RALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 + I+ + DI+ +L NRN+ FLNP+ + +P L + + A ++ Sbjct: 2 KIKQISSYNG--DIIDTILKNRNIK--DIDTFLNPNSSEDL-NPFDLHNIELGANVLLAH 56 Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDRIVDGYGPNPSLMEKFI 146 + ++ I I D D DG +S +++ +++ + + ++ DR +G + +K Sbjct: 57 LLINDHIGILVDADADGFSSASIIYQYIKKIEPDSHVSYFLHDR--KAHGLTDEISQKIA 114 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 + LII D S D LQ GID+IV+DHH+V L+N ++ S Sbjct: 115 DSSIDLIIIPDAASNDVDELQRLYYMGIDIIVLDHHEVDKMPTHG-ILINNQLDENKSTN 173 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLN-RAYVV 265 +L AG+ + + RIL LLDLVA+ + D + R V Sbjct: 174 KNLVGAGMAYKFCQALDRIL-------DTHYADDLLDLVAIGQIGDTSDISENEVRNLVF 226 Query: 266 KGLMVAR 272 +GL Sbjct: 227 RGLETIN 233 >gi|300813750|ref|ZP_07094064.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512139|gb|EFK39325.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 189 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 18/178 (10%) Query: 429 VEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAV 488 L GGH MA GL++++ NF K A + T ID LN + Sbjct: 4 CIRDELEAFGGHKMACGLSIKKENFNNFNLNLNKNAK--LTRDDLTKKIYIDYPLNFPQI 61 Query: 489 NIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAF 546 N+ LI L P+G N P+F N K+ I + +++ E + A+ F Sbjct: 62 NMKLIQDLNKLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLED-NGVFQNALLF 120 Query: 547 RVYGTPLGE-------------FLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + L + ++ ++ V + VN +RG +LR+ Sbjct: 121 KDSNEFLKDLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGYSSIELRLKSYRV 178 >gi|315452914|ref|YP_004073184.1| single-stranded-DNA specific exonuclease [Helicobacter felis ATCC 49179] gi|315131966|emb|CBY82594.1| single-stranded-DNA specific exonuclease [Helicobacter felis ATCC 49179] Length = 433 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 99/422 (23%), Positives = 167/422 (39%), Gaps = 47/422 (11%) Query: 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SV 121 S+ L+ + D +A + QA+ +I++ GDYD DG + AL++ F Sbjct: 22 SLDSLL----TMGDGARALELLHQALQEKRQIILGGDYDCDGMSGSALVLYFFKEVLDHP 77 Query: 122 NANMYIPDRIVDGYGPNPSLMEKFIN---------------------EGAQLIITVDCGS 160 N IP R D YG + L E++ L IT+D G+ Sbjct: 78 YVNYIIPRRNTDCYGMSVELFEQYAYKRRLVRTRYIRGQPTGGQALDFNHSLFITIDNGA 137 Query: 161 TSYDA-LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 T D+ + +I+ DHH+ IPA L D + A V +L++ Sbjct: 138 TIPDSVCDFLHAHNTPLILSDHHEFLEGRIPACDAFVHPLLSDDHPFKGISGACVGYLLM 197 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + + + L + L L+T+ D++ L +V+ + + P Sbjct: 198 LAYAKHYKVK---MRLDQLQYMQVLAGLSTIGDMMDLSAPYNRQLVQRMDHTLKTQMPNS 254 Query: 280 KA-LIERVNISSPITAENLGYMIGPSINAGGRIGESN---LGSRLLISDDSQELEM-LAM 334 L + +P L + I P INA GR+ + ++ S+E A+ Sbjct: 255 IKALYQAHKYPTPYKLSALAWDIIPLINAVGRLDGIEGFCHCNLVVDLLASKEANPDYAL 314 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF 394 L NQ R+ + + + Q+ +V G R G++G+LA + E Sbjct: 315 LLVQTNQQRKEY---------IRTIKKTLKPTQSGGLVHAGGRIPRGLLGMLANQFLEGG 365 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFG 454 G S +E++ S RS E D+ +++S E+GI V+GGGH A G+ R N Sbjct: 366 GHVSLCWRYEQESIE-ASLRSKE-ADLMEILSQLKEKGIDVQGGGHKQACGVVFARQNDF 423 Query: 455 RL 456 + Sbjct: 424 QQ 425 >gi|322378512|ref|ZP_08052962.1| single-stranded-DNA specific exonuclease [Helicobacter suis HS1] gi|321149073|gb|EFX43523.1| single-stranded-DNA specific exonuclease [Helicobacter suis HS1] Length = 399 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 48/399 (12%) Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLM 142 + +A+ ++I+I GDYD DG + AL++ F + N IP R D YG + L+ Sbjct: 1 MREALNAQKQIIIGGDYDCDGMSGTALVLYFFKEVLHYPHINYIIPQRNTDCYGMSVELL 60 Query: 143 EKFINE---------------------GAQLIITVDCGSTSYDA-LQYATNQGIDVIVID 180 E++ N+ L IT+D G+T D+ + + +I+ D Sbjct: 61 EEYENKRRLVRTHYKNGQPIGGIALNLHNSLFITIDNGATIPDSVCDFLHARNTRLILSD 120 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HH + IP L+D + A V +L ++ + + L Sbjct: 121 HHHFLEDRIPKCDAFIHPLLNDNHPFKGISGACVGYLFMLAYAKQHKIK---MRLDHLQY 177 Query: 241 LLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 + L ++T+ D++ + NR + + + L+A+ + +P L + Sbjct: 178 MQVLAGISTIGDMMDVSAPYNRQLLKRMDKTLKTNMPASLQAIYQAQKYKNPYKLSTLAW 237 Query: 300 MIGPSINAGGRIG------ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 + P INA GR NL LL + + A L N+ R++ ++ Sbjct: 238 DVIPLINAVGRFDGISGFCHCNLVVDLLATQQANPAY--AALLVEANEKRKICVQSL--- 292 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-GS 412 + + Q + ++ G G++G+LA +L + A+ + G+ + S Sbjct: 293 ------KKSLETTQKNKLIYTGGEVPRGVLGVLANQLL-ENEGVCIALCWRYQGESVEVS 345 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 R+ EG I F ++ GGH A G+ Sbjct: 346 LRAKEGDLIVLFTRFKEMGIEVLG-GGHKQACGMVFNNN 383 >gi|322380523|ref|ZP_08054705.1| single-stranded-DNA-specific exonuclease [Helicobacter suis HS5] gi|321147052|gb|EFX41770.1| single-stranded-DNA-specific exonuclease [Helicobacter suis HS5] Length = 399 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 48/399 (12%) Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLM 142 + +A+ ++I+I GDYD DG + AL++ F + N IP R D YG + L+ Sbjct: 1 MREALNAQKQIIIGGDYDCDGMSGTALVLYFFKEVLHYPHINYIIPQRNTDCYGMSVELL 60 Query: 143 EKFINE---------------------GAQLIITVDCGSTSYDA-LQYATNQGIDVIVID 180 E++ N+ L IT+D G+T D+ + + +I+ D Sbjct: 61 EEYENKRRLVRTHYKNGQPIGGIALNLHNSLFITIDNGATIPDSVCDFLHARNTRLILSD 120 Query: 181 HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS 240 HH + IP L+D + A V +L ++ + + L Sbjct: 121 HHHFLEDRIPKCDAFIHPLLNDNHPFKGISGACVGYLFMLAYAKQHKIK---MRLDHLQY 177 Query: 241 LLDLVALATVCDVVPLI-GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGY 299 + L ++T+ D++ + NR + + + L+A+ + +P L + Sbjct: 178 MQVLAGISTIGDMMDVSAPYNRQLLKRMDKTLKTNMPASLQAIYQAQKYKNPYKLSTLAW 237 Query: 300 MIGPSINAGGRIG------ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 + P INA GR NL LL + + A L N+ R++ ++ Sbjct: 238 DVIPLINAVGRFDGISGFCHCNLVVDLLATQQANPAY--AALLVEANEKRKICVQSL--- 292 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGI-GS 412 + + Q + ++ G G++G+LA +L + A+ + G+ + S Sbjct: 293 ------KKSLETTQKNKLIYTGGEVPRGVLGVLANQLL-ENEGVCIALCWRYQGESVEVS 345 Query: 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 R+ EG I F ++ GGH A G+ Sbjct: 346 LRAKEGDLIVLFTRFKEMGIEVLG-GGHKQACGMVFNND 383 >gi|303233088|ref|ZP_07319762.1| DEAD/DEAH box helicase [Atopobium vaginae PB189-T1-4] gi|302480814|gb|EFL43900.1| DEAD/DEAH box helicase [Atopobium vaginae PB189-T1-4] Length = 519 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVN 525 N +PA +I V++ S + + +D LE P+G GN P+FA +++ V Sbjct: 2 NALPAEQFDDTDEISAVVSLSEITVQSLDSLEIMQPFGKGNERPLFAARGVIMKNKAKVG 61 Query: 526 --LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 HL+ Q L AI FR + + K + + W+G + + Sbjct: 62 SQGNHLRF-VAVQGKARLDAILFRAAHID----ELMANTKPVDIVFSASNETWQGRIKPK 116 Query: 584 LRVLDA 589 L V D Sbjct: 117 LIVQDI 122 >gi|218506942|ref|ZP_03504820.1| single-stranded-DNA-specific exonuclease protein [Rhizobium etli Brasil 5] Length = 84 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 54/84 (64%) Query: 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTG 569 +FA P H+++ R+V H+++T E+ D L IAFR T LG L+ SRG +HV G Sbjct: 1 LFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAG 60 Query: 570 HLCVNYWRGSKRCQLRVLDASPVE 593 L ++++G++R Q+RV DA+P + Sbjct: 61 TLGADHYQGARRIQMRVCDAAPAK 84 >gi|294671185|ref|ZP_06736039.1| hypothetical protein NEIELOOT_02893 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307123|gb|EFE48366.1| hypothetical protein NEIELOOT_02893 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 111 Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++AR+ R+V+ L + L+P +L +C+ AA R+ AI E I+I Sbjct: 22 GADPLIARLCAARDVAGPDE---LLDKLSALLPY-TLLKNCETAAVRLADAIEKQENILI 77 Query: 98 FGDYDVDGAASVALMMRFLSHCSVNANMY 126 DYD DGA + A+ ++ L + Y Sbjct: 78 VADYDADGATACAVGIKGLQAMGARVDFY 106 >gi|301321609|gb|ADK68999.1| Single-stranded DNA-specific exonuclease [Gordonia sp. KTR9] Length = 679 Score = 97.1 bits (240), Expect = 7e-18, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 7/189 (3%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L D D + I +AI I + DYD+DG A+ L L+ + + IP Sbjct: 50 LPDLDLSVELIHRAISQGRTITVLTDYDMDGVAAGILTYAGLAELGAHVELVIPH-YEGP 108 Query: 135 YGPNPSLMEKFINEGAQ--LIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 +++ + + L+IT D G S + + A ++G+ VIV DHH + A Sbjct: 109 REITAPKVDQALAQYPTTSLLITCDVGINSNEGIDRAHDRGVAVIVTDHHIQTVDVCRAD 168 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 A+V+PNR + +C + V +L R + + L + + D Sbjct: 169 AVVDPNRTGATYPEPDICGSQVALHILSAYART----HCPTKATAIAMLSVFGGIGGLAD 224 Query: 253 VVPLIGLNR 261 V+PL G R Sbjct: 225 VMPLRGQTR 233 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 105/343 (30%), Gaps = 79/343 (23%) Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL--EMLAMKLDVLNQNRRLMESAMLEQ 353 ++ + R + + + + + A L N+ R+ + A +E Sbjct: 349 DMADSFMVFVPEAVRSSRPDYHPEVFDTYEHLDAGRRSAADTLVANNETRKELTKAAMEG 408 Query: 354 AEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 +Q + PG++GLLA+ L ++ P+ I GS Sbjct: 409 I--------FAAEQPYAPYLWFSDAKPGVLGLLASNLLQETSMPTMVI---NPETLSGSA 457 Query: 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALIT 473 R+ E FD+ VS + + + GH A G+ + + +P + Sbjct: 458 RAPEWFDVLGFVSQMNDPRL--RAQGHHQACGVGFTDTHALAELIAAIAVYVDSLPEVDP 515 Query: 474 TPV----FKIDGVLNASAVNIA----------------------LIDMLESAGPYGAGNP 507 +D + + +++ L + L GP+G G P Sbjct: 516 EDQRADLHMMDIE-SLAQLDMESAEVLVRLRPDIPLPMAPELISLAESLSVLGPFGQGFP 574 Query: 508 NPVFAFPNHKLQ------SIRVV------NL------------AHLQMTFESQDSETLQA 543 + +L SI+++ HL++ L+ Sbjct: 575 A-----ADIRLTFQPASASIKLMSRKEEAGELQKGQAPEPADYKHLKVV----TGHGLEL 625 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 + + ++ S + T L N + G+ R Q + Sbjct: 626 LWWNKAD----QYQALSDATLVTATIELSTNLFMGNTRPQAFI 664 >gi|163791329|ref|ZP_02185742.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp. AT7] gi|159873408|gb|EDP67499.1| single-stranded-DNA-specific exonuclease RecJ [Carnobacterium sp. AT7] Length = 98 Score = 94.4 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 +W + +++ ++ + + + R + + + F+ P + DP ++ Sbjct: 7 KWKLNEPIVDHEKVTDLSKALSLSPLFIELCLQRGLDSKEKIEQFIQPD-ETWIYDPYLM 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDV 103 D ++A RI +A+ E+I I+GDYD Sbjct: 66 HDMERAVSRITEAVEQGEQITIYGDYDA 93 >gi|145652264|gb|ABP88187.1| hypothetical protein [Borrelia lonestari] Length = 168 Score = 93.3 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 8/172 (4%) Query: 428 AVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 + + +++ GGH AAG T K I + ID ++ + Sbjct: 1 MIPDHLIINSGGHKAAAGFTFYENVLNEFIKELVKAIKKIEYNELNENSIIIDALIPKNI 60 Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL----AHLQMTFESQDSETLQA 543 L+ + PYG G + + +Q IR ++ H+ M ++ + + +A Sbjct: 61 TKKELVKTINLFEPYGHGFKEFILKMEDVLIQEIRTIDKNGNSKHISMKIKN-NRDYYKA 119 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 I F GT + L G+ + + + +++ S++ L+++D + Sbjct: 120 IYFN--GTQNIQELEIKDGQNIDIIFTIGEDFYNQSEKI-LKIIDLKKRQNQ 168 >gi|625706|pir||S44445 single-stranded-DNA-specific exonuclease (EC 3.1.-.-) - Erwinia chrysanthemi (fragment) gi|495245|emb|CAA54109.1| recJ [Erwinia chrysanthemi] Length = 99 Score = 92.5 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97 ++P ++ R+ R V L S+R L+ D +L +A + QA+ ++ +I+I Sbjct: 19 SLPALLRRLYAQRGVRQ---MQELERSLRGLL-DYRLLGGITQAVEVLRQALADNRRIVI 74 Query: 98 FGDYDVDGAASVALMMRFLSHCSVN 122 GD+D DGA S AL + L + + Sbjct: 75 VGDFDADGATSTALTVLALRSMAAH 99 >gi|167933079|ref|ZP_02520166.1| single-stranded-DNA-specific exonuclease RecJ [candidate division TM7 single-cell isolate TM7b] Length = 169 Score = 91.4 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 10/136 (7%) Query: 459 FFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKL 518 + +N L+ +ID + S +N L+ + + P+G GNP PV + Sbjct: 38 YNSLQLNNQERYLLPKADVEID---DFSEINEDLVGKIATMEPFGNGNPEPVIKITAADI 94 Query: 519 QSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 +++ + H++++ D ++ +AF E + G + +N W Sbjct: 95 VNVQHMGTDGQHIKLSARDSDGVVIRMLAFNA-----PENFLCKPGDTASIWFRPVINKW 149 Query: 577 RGSKRCQLRVLDASPV 592 +G + + +L V Sbjct: 150 QGIRSVEGELLHLQLV 165 >gi|126733217|ref|ZP_01748964.1| probable single-stranded DNA-specific exonuclease [Roseobacter sp. CCS2] gi|126716083|gb|EBA12947.1| probable single-stranded DNA-specific exonuclease [Roseobacter sp. CCS2] Length = 130 Score = 91.0 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 5 AFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPS 64 AFL V S +G RWV +E + A+ Q+ + + RVLV R V A FL P+ Sbjct: 9 AFLNVTASANGRRWVGPTAEED-RLSEAMAQQTGLAPALCRVLVRRGVDAQDAPAFLAPT 67 Query: 65 IRLLMPDPLILT 76 +R L+PDP +L Sbjct: 68 LRDLLPDPRVLK 79 >gi|328957580|ref|YP_004374966.1| hypothetical protein CAR_c12580 [Carnobacterium sp. 17-4] gi|328673904|gb|AEB29950.1| hypothetical protein CAR_c12580 [Carnobacterium sp. 17-4] Length = 107 Score = 91.0 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDPLIL 75 +W I+ A +++ ++ + + + R + + + F+ P + DP ++ Sbjct: 7 KWKLKEQNSNIDVATDLSKALSLSPLFIELCLQRGLDSKEKIERFIKPDESWIY-DPYLI 65 Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDV 103 + A RI A+ E+I I+GDYD Sbjct: 66 YGMESAVSRITDAVEQGEQITIYGDYDA 93 >gi|289808345|ref|ZP_06538974.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 67 Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN-ANMYIPDRIVDGYG 136 D A + A +I++ GD+D DGA S AL + + + + +P+R DGYG Sbjct: 1 IDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYG 60 Query: 137 PNPSLME 143 +P +++ Sbjct: 61 LSPEVVD 67 >gi|90413182|ref|ZP_01221178.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium profundum 3TCK] gi|90325873|gb|EAS42325.1| putative single-stranded-DNA-specific exonuclease RecJ [Photobacterium profundum 3TCK] Length = 103 Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 40 PDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFG 99 P ++ R+ +R ++ + L + L+ L + A + +V A+ + +I+I G Sbjct: 20 PPLLQRIYASRGIASE---LELERGAKGLLSY-DKLHGIEPAVQLLVTALAENRRIIIVG 75 Query: 100 DYDVDGAA 107 D+D DGA Sbjct: 76 DFDADGAT 83 >gi|14520284|ref|NP_125759.1| putative ss-DNA-specific exonuclease recj related [Pyrococcus abyssi GE5] gi|5457499|emb|CAB48990.1| recJ-like single-stranded exonuclease recJ homolog [Pyrococcus abyssi GE5] Length = 481 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 70/473 (14%), Positives = 143/473 (30%), Gaps = 86/473 (18%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 +A I I I D DG S A++ + L+ + ++ I + Sbjct: 15 KEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSI------VKQVS 68 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 L+ + +E ++ I D GS S ++ + VI++DHH ++ E+P ++ Sbjct: 69 EDLVRQLKDEDYKVFIFSDLGSGSL-SIIKEHLKDRTVIILDHHPPENVELPEKHILVNP 127 Query: 199 RLDDLSGQGHLCAAGVVFLVLVLIYRI---------------LRQDNKVPLNFDL----- 238 + L +GV + + +++++ V +L Sbjct: 128 VQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIED 187 Query: 239 --------------------LSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278 L ++A AT ++ + G R + + L + Sbjct: 188 GKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAI-EWLRNNNFNPDKR 246 Query: 279 LKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA---- 333 L E + ++ IG+ + D E A Sbjct: 247 YWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREFATLLN 306 Query: 334 ----------------------MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI 371 + + + + + + ++ + + V+ Sbjct: 307 ATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVL 366 Query: 372 VVEGDRWH-----PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFDI 421 V + + + A + FA + E+ GS R+ E G+ + Sbjct: 367 YVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHL 426 Query: 422 GKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 G+ + A E I +GGGHA+AAG+ V + K V Sbjct: 427 GEALKKAAEM-IGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQ 478 >gi|300947615|ref|ZP_07161786.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300452790|gb|EFK16410.1| conserved hypothetical protein [Escherichia coli MS 116-1] Length = 86 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 +P ++ R+ +R V L S++ ++P L+ +KA + A +I++ Sbjct: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 Query: 99 GDYDVDGAA 107 GD+D DGA Sbjct: 78 GDFDADGAT 86 >gi|207092106|ref|ZP_03239893.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter pylori HPKX_438_AG0C1] Length = 76 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 P P + D KAA +I++A+ + +I++ GDYD DG S A+M +F + Sbjct: 23 FPSPFLFKDLKKAALKIIEAMQINTEILVVGDYDADGVISSAIMAKFFESLNYK 76 >gi|167948072|ref|ZP_02535146.1| single-stranded-DNA-specific exonuclease RecJ [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 71.3 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 4/168 (2%) Query: 264 VVKGLMVARR-QGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLL 321 + +GL R + PG++ALI + A +LGY IGP +NA GR+ + LG L Sbjct: 1 MEQGLRRIRAGRCRPGIEALIRLAGRDQSRLVASDLGYAIGPRLNAAGRLEDMGLGIECL 60 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ--ASVIVVEGDRWH 379 ++DD +A++LD LN+ RR +E M EQA+ + ++Q + + WH Sbjct: 61 LADDPSAALQMAVELDRLNRTRREIEQQMQEQAQQLLQQLHREMQGEIPLALCLYDPNWH 120 Query: 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 G+VG+LA+R+KEK+ RP A + DG GS RS+ I ++ Sbjct: 121 QGVVGILASRIKEKYHRPVIAFADVGDGILKGSARSVPALHIRDLLER 168 >gi|291545646|emb|CBL18754.1| hypothetical protein CK1_04440 [Ruminococcus sp. SR1/5] Length = 80 Score = 71.3 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 17 RWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLIL 75 RWV + AI ++ I ++AR++ NR+V D + +L + L P ++ Sbjct: 3 RWVVAAKRADFA---AIGKEFGIDPVIARLIRNRDVQDRDEIRRYLYGKVDEL-ASPHLM 58 Query: 76 TDCDKAARRIVQAIYNS 92 D DKA + I Sbjct: 59 KDVDKAVEILRNKIKEK 75 >gi|18978427|ref|NP_579784.1| hypothetical protein PF2055 [Pyrococcus furiosus DSM 3638] gi|18894271|gb|AAL82179.1| hypothetical protein PF2055 [Pyrococcus furiosus DSM 3638] Length = 477 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 69/468 (14%), Positives = 140/468 (29%), Gaps = 86/468 (18%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 +A + I I I D DG S A++ + L + ++ I + Sbjct: 12 EAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISI------VKQVSE 65 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+ + +E ++ I D GS S ++ + VI++DHH ++ ++ ++ Sbjct: 66 DLLRELKDEDYKIFIFSDLGSGSLSLIKEY-LKEKTVIILDHHPPENVKLEEKHILVNPV 124 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILR--------------QDNKVPLNFDLLSLLD-- 243 + L +GV + + R Q+N + L +++ Sbjct: 125 QFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDG 184 Query: 244 ------------------------LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 ++A AT ++ + G R + + L Sbjct: 185 KSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAI-EWLKNKGFNPEKKY 243 Query: 280 KALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA----- 333 L E ++ + IG+ + D E A Sbjct: 244 WELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATLLNA 303 Query: 334 ---------------------MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 K + ++ + + + ++ + V+ Sbjct: 304 TGRLNLGNLGVAVCLGDEEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVYVLY 363 Query: 373 VEGDRWH-----PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFDIG 422 V + + A + FA + E+ GS R+ E G+++G Sbjct: 364 VGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDEDPNLLKGSARTTERALAKGYNLG 423 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 + + A E +GGGHA+AAG+ + R K V Sbjct: 424 EALRKAAELVNG-EGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSK 470 >gi|14590012|ref|NP_142076.1| hypothetical protein PH0059 [Pyrococcus horikoshii OT3] gi|3256444|dbj|BAA29127.1| 478aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 478 Score = 70.6 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 85/280 (30%), Gaps = 24/280 (8%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +A + I I I D DG S A++ + L+ ++ I Sbjct: 13 IREAVDLVKFHIELGHTIRIISHRDADGITSAAILAKALAREGAKFHISI------VKQV 66 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + L+ + +E ++II D GS S + VI+ H E + L NP Sbjct: 67 SEELVRQLKDEEYKIIIFSDLGSGSLSLIGEHLKDKSVVILDHHPPEPVETHEKHILANP 126 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + S L +GV + + L + + V D+ Sbjct: 127 VQFGANSV-RDLSGSGVSYFFARELNE------------MNKDLAYIAIVGAVGDMQEND 173 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G+ + + + G ++ + + + L Y P I G+ Sbjct: 174 GVFHGMNLDIIEDGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEI--PEITGDERKA 231 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAK 357 L + + +++R+ + ++ Sbjct: 232 IEWLRNKGFDPDKKYWELS---DEDRKKLHDYLVIHMIKH 268 >gi|145652220|gb|ABP88155.1| putative RecJ [Borrelia lonestari] Length = 250 Score = 70.6 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 105/255 (41%), Gaps = 8/255 (3%) Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 I + L N+ I++ ID + ++ P +A + +S Sbjct: 1 EFSKNTYIVLFNKDEQNQLLNKFFNKKINIESIDISETFVKKFPKFAKKTLKEVMQISKY 60 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 + + + Y I+ + NK L L L VA+ T+ D +P+I NR V + Sbjct: 61 FKYKEIDIKEKLYYIFYNIIFEVNKDILKNCLKK-LKFVAIGTIADNMPIINENRIVVKE 119 Query: 267 GLMVARRQGNPGLKALIERVNI--SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISD 324 GL + N + L++ VNI + IT+ ++ + I P +N+ GR+ ++++ + L+++ Sbjct: 120 GLKEIALRENMSINYLLKEVNILTKTNITSTDIAFKIAPILNSTGRLEKADITIQFLLTE 179 Query: 325 DSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVG 384 D ++E ++ +N R+ E + + + IV GI Sbjct: 180 DINKIENKFKEIKNINTLRKHKEE-----ISWNIHNENTIFKNDKFIVCYDKYTPKGISS 234 Query: 385 LLAARLKEKFGRPSF 399 +A RL + + + Sbjct: 235 RMATRLASYYQKVAV 249 >gi|303244184|ref|ZP_07330522.1| phosphoesterase RecJ domain protein [Methanothermococcus okinawensis IH1] gi|302485569|gb|EFL48495.1| phosphoesterase RecJ domain protein [Methanothermococcus okinawensis IH1] Length = 468 Score = 70.6 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 25/253 (9%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + +A + + + I+I+ D DG + ++ L+ ++ A R + G Sbjct: 1 MPNLKRAVKTLRK--NRKNNILIYTHIDTDGITTRVILEELLNRLNIEAEF----RFLKG 54 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTS-------YDALQYATNQGIDVIVIDHHQVKSE 187 G N +E + LII D GS + ++I++DHH + Sbjct: 55 IGTNS--IEDIPFKDYDLIIFGDLGSGQLDLIKGKMEEYNLLDKTDKNIIILDHHIPANI 112 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 IP + +++ G +C AGV +L + P N DL L A+ Sbjct: 113 NIPKNIINVNPWNNNIDGGKEICGAGVSYLFAKM---------CNPRNIDLAKYAVLGAV 163 Query: 248 ATVCDVV-PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + ++ LIGLNR+ + + P L+ + N Sbjct: 164 GDIQNLEGKLIGLNRSILNDAVKSGEVVAFPDLQFYGKHTKPIFASIKYFTDVRTDLMNN 223 Query: 307 AGGRIGESNLGSR 319 I N ++ Sbjct: 224 DSRIINFINQINK 236 >gi|150401766|ref|YP_001325532.1| phosphoesterase domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150014469|gb|ABR56920.1| phosphoesterase RecJ domain protein [Methanococcus aeolicus Nankai-3] Length = 468 Score = 70.2 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 21/180 (11%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L + A + + + + I+++ D DG S ++ ++ ++NA R + Sbjct: 2 ELLKNLKLAVKILRK--NRNNNILVYTHIDTDGITSRVILEELMNKLNINAEF----RFL 55 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSY----DALQYATNQGIDVIVIDHHQVKSEE 188 G + + LII D GS + L+ + +I++DHH + Sbjct: 56 KQLGT--DTINEIPFNDYDLIIFADLGSGQINLIKEKLKNEKTKIPHIIILDHHITAKTQ 113 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 IP + +++ G +C AGV +L P DL L A+ Sbjct: 114 IPENIINVNPWNNNIDGGKEICGAGVCYLFA---------KTCNPRYTDLAKYAILGAVG 164 >gi|221316527|ref|ZP_03598332.1| single-stranded-DNA-specific exonuclease RecJ, putative [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 329 Score = 69.8 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 108/269 (40%), Gaps = 21/269 (7%) Query: 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEK 393 + + + +++M++++ K+ + + S+ +++ I GL+A ++ +K Sbjct: 69 EYAFDMMKKVKGRQNSMIKKSLEKLRSSTYNEGGISIALLDSSDE-AAITGLVANKVAKK 127 Query: 394 FGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNF 453 + +P+ + +++ K IGSGR E + + + E G++ GHA A G+++ NF Sbjct: 128 YQKPALVLYYKDK-KYIGSGRGDEKV-LSSLKDWCNETGLVEFAQGHANAFGISIPEDNF 185 Query: 454 GRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML---ESAGPYGAGNPNPV 510 + V+++D ++ V+ +LI+ + + +G P+ Sbjct: 186 EEFKKRTHEV-------EQNEFVYEVDLIVK-ENVDRSLIEDVTDNKHL--FGGKVQEPL 235 Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGK-RMHVTG 569 AF K+ + + +TF ++ + + + M G Sbjct: 236 LAFVGIKI-NKNFIRQKGSMLTFYENG---VEFVMYGAPEGLYESLKNNFDRQITMDFVG 291 Query: 570 HLCVNYWRGSKRCQLRVLDASPVEGHHFA 598 VN + + QL ++D E + Sbjct: 292 TPSVNVYGNKRTLQLVLVDCERNESGQYD 320 >gi|311697297|gb|ADQ00169.1| single-stranded-DNA-specific exonuclease RecJ-like protein [marine bacterium HP15] Length = 655 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 63/458 (13%), Positives = 151/458 (32%), Gaps = 46/458 (10%) Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDN-KVPL 234 ++ D + + A + + ++ + L +V+ + + K P Sbjct: 196 SVLSDSPRHEIRPSDAVLYPDCSLFEEDVNKKALTLTSLVYELCTQCREQAIEKVVKHPR 255 Query: 235 NFDLLSLLD---------LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG------- 278 + L++ L LVAL+ + D +P+ L R +V +G+ R Sbjct: 256 SQALMAQLQSACLESSEGLVALSLLLDDMPMTRLVRHFVKRGVEQINRGAILQPRTAHSK 315 Query: 279 ------LKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 +++L+ + P+T+++L + + P +A G + + L+S++ + Sbjct: 316 GVLSYGMRSLLAECELPLPVTSQSLQFGLSPLFSALCYAGTAEILIDCLLSNERKTASDK 375 Query: 333 AMKLDVLNQNR-----RLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 A K ++ + + M +E + D+ + +V + D + + + A Sbjct: 376 AAKASLIKAKTYFPSLKHLAGLMKGDSEKLDPSPAGDVHRFRYVVHDLDAANEKYIPVFA 435 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGIL----VKGGGHAMA 443 + + G +S G RS + ++ ++ + A + Sbjct: 436 EQKHAEHGVTQLVVSESAPGYARCFVRS-DVINVNDVLRECSFRLAVKGANFCFWADAFS 494 Query: 444 AGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYG 503 + + F + ++ DG L + AL +E P+G Sbjct: 495 GDILMPTSCFSDFEKIIARCLSESSAVEQSSENVIHDGPLGVNQRTSALALWVEK-QPWG 553 Query: 504 AGNPNPVFAFPNHKLQSIRVVNLAH--LQMTFESQDSETLQAIAFR--VYGTPLGEFLMQ 559 P P+F + +Q + +H +++ + + + AF + + Sbjct: 554 RQYPEPLFR-QSFVVQKSSTLMESHQEVKVRDVTPEGKVSHGEAFNLLWRNSVDKDQGRL 612 Query: 560 SRGKRMHVTGHLCVNY-------WRGSKRCQLRVLDAS 590 + V L V + L D + Sbjct: 613 RPDSIIDVEYRLKVRRSKSTSEVYGEIVNLSLVTEDIA 650 >gi|116753443|ref|YP_842561.1| phosphoesterase domain-containing protein [Methanosaeta thermophila PT] gi|116664894|gb|ABK13921.1| phosphoesterase, RecJ domain protein [Methanosaeta thermophila PT] Length = 427 Score = 67.9 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 29/207 (14%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + +KAA I +AI +++++ D DG +S L+ L+ + + R+ Sbjct: 1 MNAFEKAAETIARAILQCDRVVVVSHDDADGISSAGLICNALARAGIPFQARLTQRLT-- 58 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 I I+ D GS D + +V V+DHH+ Sbjct: 59 --------ADTIEGLKPPIVFCDMGSGQPDVISGIK---GEVFVLDHHKPVGSLNCISLN 107 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 + +D + A+GVV+ V+ R + + L L + + D Sbjct: 108 PHNFGIDGAF---EISASGVVYSVV----RKMGDN---------RDLAGLALVGAIGDRQ 151 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKA 281 +IG NR + +G+ + PGLK Sbjct: 152 AMIGANRHILEEGIAAGAVEVRPGLKM 178 >gi|270610609|ref|ZP_06221694.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] gi|270318042|gb|EFA29311.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] Length = 148 Score = 67.9 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 3/148 (2%) Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-IVVEGDRWHPGIVGLLAARLK 391 A+ LD LNQ R+ +E+ M +A ++ I + WH G++G++++R+K Sbjct: 1 ALDLDELNQTRKEIEAGMKLEAIKICQNLTALFKELPYGITLYQPDWHQGVLGIVSSRVK 60 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAV--EEGILVKGGGHAMAAGLTVE 449 +++ RP A + + +G GS RSIEG + ++ I++K GGHAMAAGL++ Sbjct: 61 DQYHRPVIAFTQDSEGILKGSARSIEGLHMRDVLERIHSQHPNIILKFGGHAMAAGLSIR 120 Query: 450 RVNFGRLCDFFQKFAHNIVPALITTPVF 477 F F + + + + Sbjct: 121 EEYFADFQHLFNQTIADWLDEEHLQGII 148 >gi|45359245|ref|NP_988802.1| single stranded DNA-specific exonuclease [Methanococcus maripaludis S2] gi|45048120|emb|CAF31238.1| single stranded DNA-specific exonuclease [Methanococcus maripaludis S2] Length = 467 Score = 67.9 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 108/310 (34%), Gaps = 37/310 (11%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + KA + + + +KI++ D DG S ++ L ++ A +I G Sbjct: 4 LLNLKKAVKILRK--NRDKKILVCTHIDTDGINSRIILENVLERLNIEAEFLFLRQIDYG 61 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ---YATNQGIDVIVIDHHQVKSEEIPA 191 I LII D GS D + T++ +I++DHH V +E+IP Sbjct: 62 -------TIDTIPFDNDLIIFADLGSGQIDLINEKLKETSKKPKIIILDHHIVSNEKIPE 114 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + D + G +C AGV + L P DL L A+ V Sbjct: 115 NIINVNPHNDGIDGGKEICGAGVCY---------LFAKICDPRFTDLAKYAVLGAVGDVQ 165 Query: 252 DVV-PLIGLNRAYV------------VKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 + LIGLNR + L + P ++ ++ + +T + Sbjct: 166 SLEGNLIGLNRDVILRDAVKAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDND-S 224 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +I N + G + L + +++ + L++ R + + Sbjct: 225 RIINFINNVNRKHGTDIIPKDYLCDLTFDQKKIMGSEF--LHKCSRYIPPDWRIHLPKVI 282 Query: 359 LTQCDDIQQA 368 + ++ Sbjct: 283 FGESYELTNE 292 >gi|330508024|ref|YP_004384452.1| phosphoesterase, RecJ domain-containing protein [Methanosaeta concilii GP-6] gi|328928832|gb|AEB68634.1| phosphoesterase, RecJ domain protein [Methanosaeta concilii GP-6] Length = 440 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 33/204 (16%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + DKAA I ++I E + + D DG S L+ L + + +R+ Sbjct: 1 MKRLDKAAEAIARSIRQCEHMRVISHNDADGITSAGLICHALMRAGIPFQATLVNRLD-- 58 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 I+ ++ D GS D + + V+DHH+ Sbjct: 59 --------RSVIDGLTGPVVFCDMGSGKPDLISRVQ---GECFVLDHHRP---------- 97 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVL--IYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 LD + HL F + +Y ++R L L + + D Sbjct: 98 --VGTLDCMHHNPHLFGIDGAFELSAAGTVYSVVRHMGDNA------DLAGLALVGAMGD 149 Query: 253 VVPLIGLNRAYVVKGLMVARRQGN 276 +IG NR+ + + + Q Sbjct: 150 RQAMIGANRSILEEAVASGAVQVR 173 >gi|328480025|gb|EGF49042.1| single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus MTCC 5462] Length = 168 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%) Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 +P + G L AGV F V + L L +DL AL T+ D+V Sbjct: 2 HPRHPEGHYPFGDLSGAGVAFKVATAL-----------LGEPPLESIDLAALGTIADLVK 50 Query: 256 LIGLNRAYVVKGLMVARRQGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGES 314 L NR GL + + Q GL A+++ + + +G++IGP +NA GR+G++ Sbjct: 51 LTDENRIIAQLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDA 110 Query: 315 NLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 N G LL + + LA ++ LNQ R+ + S + ++A T A+ Sbjct: 111 NPGVTLLTTFEEDVAAELAQQVGKLNQERQGLVSKIAQEALTMAQTPEIKRPNAAACQ 168 >gi|268324316|emb|CBH37904.1| putative phosphoesterase, DHH family [uncultured archaeon] Length = 460 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 24/198 (12%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + +KAA I E + YD DG SVA++ L + + I Sbjct: 6 KNLEKAAEI----IKRHEYARVISHYDADGITSVAIICTALLRRGIQFHATI-------- 53 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----QVKSEEIPA 191 N + L+I D G+ D + + DV++IDHH V P Sbjct: 54 -VNKVERSLIQDLNEGLVIFCDMGTAHTDLIL-EHLKEKDVVIIDHHVPLASVPIPTSPT 111 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + V N S + + + + + L L ++ Sbjct: 112 SSFVLVN-PYCSSEEKEEIGGDICAAGISYLLVRCLSTDANNNI----DLAGLAVAGSLG 166 Query: 252 DVVPLI-GLNRAYVVKGL 268 D V L G+N+ + +G+ Sbjct: 167 DKVALDSGINKLILDEGI 184 >gi|261349954|ref|ZP_05975371.1| putative single-stranded-DNA-specific exonuclease [Methanobrevibacter smithii DSM 2374] gi|288860737|gb|EFC93035.1| putative single-stranded-DNA-specific exonuclease [Methanobrevibacter smithii DSM 2374] Length = 444 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 +A+ + + I N+ I I D DG ++ A++ L +V + I R+ + Sbjct: 7 EASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE------ 60 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+ + +E L+I D GS+ + + DVI+ DHHQV E + + Sbjct: 61 DLINQLRHEKHDLVIFSDMGSSF---VGELNSFKCDVIIADHHQVSDVEAESNVVHINPH 117 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRI 225 L D+ G L G +L + + + Sbjct: 118 LFDIDGSRDLSGTGSSYLAVRDLDKK 143 >gi|148643253|ref|YP_001273766.1| single-stranded DNA-specific exonuclease [Methanobrevibacter smithii ATCC 35061] gi|148552270|gb|ABQ87398.1| single-stranded DNA-specific exonuclease, DHH family [Methanobrevibacter smithii ATCC 35061] Length = 444 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 9/146 (6%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 +A+ + + I N+ I I D DG ++ A++ L +V + I R+ + Sbjct: 7 EASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE------ 60 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+ + +E L+I D GS+ + + DVI+ DHHQV E + + Sbjct: 61 DLINQLRHEKHDLVIFSDMGSSF---VGELNSFKCDVIIADHHQVSDVEAESNVVHINPH 117 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRI 225 L D+ G L AG +L + + + Sbjct: 118 LFDIDGSRDLSGAGSSYLAVRDLDKK 143 >gi|222445486|ref|ZP_03608001.1| hypothetical protein METSMIALI_01125 [Methanobrevibacter smithii DSM 2375] gi|222435051|gb|EEE42216.1| hypothetical protein METSMIALI_01125 [Methanobrevibacter smithii DSM 2375] Length = 444 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 9/146 (6%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 +A+ + + I N+ I I D DG ++ A++ L +V + I R+ + Sbjct: 7 EASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE------ 60 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+ + +E L+I D GS+ + + DVI+ DHHQV E + + Sbjct: 61 DLINQLRHEKHDLVIFSDMGSSF---VGELNSFKCDVIIADHHQVSDVEAESNVVHINPH 117 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRI 225 L D+ G L AG +L + + + Sbjct: 118 LFDIDGSRDLSGAGSSYLAVRDLDKK 143 >gi|52549816|gb|AAU83665.1| putative single-stranded-DNA-specific exonuclease [uncultured archaeon GZfos32E7] Length = 460 Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 24/198 (12%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + +KAA I E + YD DG SVA++ L + + I Sbjct: 6 KNLEKAAEI----IKRHEYARVISHYDADGITSVAIICTALLRRGIQFHATI-------- 53 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH----QVKSEEIPA 191 N + L+I D G+ D + + DV++IDHH V P Sbjct: 54 -VNKVERSLIEDLNEGLVIFCDMGTAHTDLIL-EHLKEKDVVIIDHHVPLASVPIPTSPT 111 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + V N S + + + + + L L ++ Sbjct: 112 SSFVLVN-PYCSSEEKEEIGGDICAAGISYLLVRCLSTDANNNI----DLAGLAVAGSLG 166 Query: 252 DVVPLI-GLNRAYVVKGL 268 D V L G+N+ + +G+ Sbjct: 167 DKVALDSGINKLILDEGI 184 >gi|148826177|ref|YP_001290930.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittEE] gi|148716337|gb|ABQ98547.1| single-stranded-DNA-specific exonuclease RecJ [Haemophilus influenzae PittEE] Length = 61 Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 535 SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 Q L AIAF + + + K+ + L +N +RG++ QL V P++ Sbjct: 6 KQGGVLLDAIAFNINTRLYPDLSI----KQARLAYKLDINEFRGNRSLQLLVDYIEPID 60 >gi|159905375|ref|YP_001549037.1| phosphoesterase domain-containing protein [Methanococcus maripaludis C6] gi|159886868|gb|ABX01805.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C6] Length = 467 Score = 65.2 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 105/285 (36%), Gaps = 36/285 (12%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + KA + + + ++I++ D DG S ++ + L ++ A +I G Sbjct: 4 LINLKKAVKLLRK--NRDKRILVCTHIDTDGINSRIILEKVLERLNIEAEFLFLRQIDYG 61 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN---QGIDVIVIDHHQVKSEEIPA 191 I + LII D GS D + + +I++DHH + +E IP Sbjct: 62 -------TIDTIPFDSDLIIFADLGSGQIDLINEKLEELSKKPKIIILDHHFISNERIPE 114 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + + + G +C AGV +L P DL L A+ V Sbjct: 115 NIVNVNPHNNGIDGGKEICGAGVCYLFA---------KICDPRFTDLAKYAVLGAVGDVQ 165 Query: 252 DVV-PLIGLNRAYVVK------------GLMVARRQGNPGLKALIERVNISSPITAENLG 298 + LIGLNR ++K L + P ++ ++ + +T + Sbjct: 166 SLEGNLIGLNRDVILKDAINAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDNDS- 224 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNR 343 I IN R +++ + + D + E + + + +R Sbjct: 225 -RIINFINNVNRKHGTDIIPKDYMCDLTFEQKKILGSEFLHKCSR 268 >gi|150402879|ref|YP_001330173.1| phosphoesterase domain-containing protein [Methanococcus maripaludis C7] gi|150033909|gb|ABR66022.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C7] Length = 467 Score = 65.2 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + +A + + + +KI++ D DG S ++ + L ++ A +I G Sbjct: 4 LLNLKRAVKLLRK--NREKKILVCTHIDTDGINSRIILEKVLERLNIEAEFLFLRQIDYG 61 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN---QGIDVIVIDHHQVKSEEIPA 191 I LII D GS D + + +I++DHH + +E+IP Sbjct: 62 -------TIDTIPFDNDLIIFADLGSGQIDLINEKLKELSKKPKIIILDHHLISNEKIPE 114 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + + + G +C AGV + L P DL L A+ V Sbjct: 115 NIVNVNPHNNGIDGGKEICGAGVCY---------LFAKICNPRFTDLAKYAVLGAVGDVQ 165 Query: 252 DVV-PLIGLNRAYV------------VKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 + LIGLNR + L + P ++ ++ + +T + Sbjct: 166 SLEGNLIGLNRDLILRDAINAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDND-S 224 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 +I N + G + + L ++ +++ + Sbjct: 225 RIINFINNVNRKHGTNIIPKDYLCDLTFEQKKIMGSEF 262 >gi|291533806|emb|CBL06919.1| hypothetical protein MHY_22890 [Megamonas hypermegale ART12/1] Length = 86 Score = 65.2 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 15 GFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLI 74 RW L E L + I +A +L +N+ + AK FLNP+ ++ DP + Sbjct: 2 NKRWEILPIDEKKQILLE--KNLHISSSLAEILTRKNLDENSAKLFLNPT-KIPYHDPFL 58 Query: 75 LTDCDKAARR 84 L D +KA +R Sbjct: 59 LKDMEKACQR 68 >gi|242399248|ref|YP_002994672.1| SsDNA-specific exonuclease [Thermococcus sibiricus MM 739] gi|242265641|gb|ACS90323.1| SsDNA-specific exonuclease [Thermococcus sibiricus MM 739] Length = 476 Score = 64.8 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 26/287 (9%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 + A I I I I D DG + A++ + ++ + ++ I + Sbjct: 13 EGAELIKMHIELGHSIRIISHRDADGITAGAILAKAIAREGADFHLSI------VKQLSE 66 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNP 197 L+++ E ++ I D GS S ++ V++ DHH + E + +VNP Sbjct: 67 DLIKELAEEDQKIYIFSDLGSGSIRFIERY-LADATVVIADHHPPEDGEIEQENHVIVNP 125 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + S L +GV + + + + L L + V D+ + Sbjct: 126 TQFGADSV-RDLSGSGVAYFITKALNEKNK------------DLSYLALVGAVGDMQEVD 172 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G V+ + A++ L+ I + A+ L Y P + G G+ Sbjct: 173 GQFHGINVEIIDDAKKLELIELRKEIRLFGRETRTLAQMLAYASNPEL--PGITGDLRNA 230 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 L S + R+L ++ ++ + + D Sbjct: 231 IEFLRSKGFDPDVNYWQ--LKEEEKRKLHDALVIHLIKNNASKEDID 275 >gi|134046751|ref|YP_001098236.1| exonuclease RecJ [Methanococcus maripaludis C5] gi|132664376|gb|ABO36022.1| exonuclease RecJ [Methanococcus maripaludis C5] Length = 467 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 112/310 (36%), Gaps = 37/310 (11%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + KA + + + +KI++ D DG S ++ + L ++ A +I G Sbjct: 4 LINLKKAVKLLRK--NRDKKILVCTHIDTDGINSRIILEKVLERLNIGAEFLFLRQIDYG 61 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ---YATNQGIDVIVIDHHQVKSEEIPA 191 I LII D GS D + ++ +I++DHH + +E+IP Sbjct: 62 -------TVDTIPFDNDLIIFADLGSGQIDLINEKLKEISKKPKIIILDHHLISNEKIPE 114 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + + + G +C AGV + L P DL L A+ V Sbjct: 115 NIVNVNPHNNGIDGGKEICGAGVCY---------LFAKICDPRFTDLAKYAVLGAVGDVQ 165 Query: 252 DVV-PLIGLNRAYVVK------------GLMVARRQGNPGLKALIERVNISSPITAENLG 298 + LIGLNR ++K L + P ++ ++ + +T + Sbjct: 166 SLEGNLIGLNRDVILKDAIKSGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDND-S 224 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 +I N + G + L +E +++ + L++ R + A + Sbjct: 225 RIINFINNVNRKHGTDIIPKNYLCELTFEEKKIMGTEF--LHKCSRYIPPAWRIHLPKVI 282 Query: 359 LTQCDDIQQA 368 + ++ Sbjct: 283 FGESYELTNE 292 >gi|284162411|ref|YP_003401034.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM 5631] gi|284012408|gb|ADB58361.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM 5631] Length = 459 Score = 64.4 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 70/229 (30%), Gaps = 32/229 (13%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + K AR + I E + I D DG S A+ L ++ + + Sbjct: 1 MKEILKRARELADKIKKREYVKIVTHIDADGITSGAIAFESLRRAGIDCEIKFVKNLD-- 58 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +K + + D GS + +D ++ DHH + Sbjct: 59 -------SKKIEELSNEFVWFTDLGSGCIKDIVRFK---LDCVITDHHIPEGYYRYQLNP 108 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD-- 252 + L +G +LV + + + L+ L + + D Sbjct: 109 HDFGYDGSY----DLSGSGATYLVAKFLN-----------PMNHVDLIQLAIVGAIGDLQ 153 Query: 253 ---VVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 L+GLN+ + +G+ + L+ ++ + N Sbjct: 154 DSKNCKLVGLNKFLIEEGVKHGFLKVEKDLRFFGKQTRPVFKMLEYNFD 202 >gi|289596791|ref|YP_003483487.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469] gi|289534578|gb|ADD08925.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469] Length = 477 Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 78 CDKAARR---IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + +R I + I ++KI+I D DG S ++ R L + + RI Sbjct: 1 MESFLKRAKEIARKIEEADKIVIVSHIDADGITSGSIAARALQRLNKDF------RIDFV 54 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 + +E+ +E L+ D GS + G+D ++ DHH Sbjct: 55 KQLDERKIEELKDENPDLVWFTDLGSGMVHLMY-----GLDAVITDHH 97 >gi|254168764|ref|ZP_04875606.1| DHH family [Aciduliprofundum boonei T469] gi|197622390|gb|EDY34963.1| DHH family [Aciduliprofundum boonei T469] Length = 483 Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A+ I + I ++KI+I D DG S ++ R L + + RI + Sbjct: 14 AKEIARKIEEADKIVIVSHIDADGITSGSIAARALQRLNKDF------RIDFVKQLDERK 67 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +E+ +E L+ D GS + G+D ++ DHH Sbjct: 68 IEELKDENPDLVWFTDLGSGMVHLMY-----GLDAVITDHH 103 >gi|254168837|ref|ZP_04875678.1| DHH family [Aciduliprofundum boonei T469] gi|197622274|gb|EDY34848.1| DHH family [Aciduliprofundum boonei T469] Length = 483 Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A+ I + I ++KI+I D DG S ++ R L + + RI + Sbjct: 14 AKEIARKIEEADKIVIVSHIDADGITSGSIAARALQRLNKDF------RIDFVKQLDERK 67 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 +E+ +E L+ D GS + G+D ++ DHH Sbjct: 68 IEELKDENPDLVWFTDLGSGMVHLMY-----GLDAVITDHH 103 >gi|288932039|ref|YP_003436099.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM 10642] gi|288894287|gb|ADC65824.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM 10642] Length = 431 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 64/444 (14%), Positives = 137/444 (30%), Gaps = 91/444 (20%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + + + I+ YD DG + A++ L ++ + + + P Sbjct: 16 LDKHDYVRIYAHYDADGISGAAIVSIALMRMGKKVHVSFLKGLNESFEPE---------- 65 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 L I VD GS + + DVI++DHH L + G Sbjct: 66 --DLTIFVDMGSGYPEKISEIKE---DVIIVDHHFPVGRIEKENLAHINPHLAGIDGSFE 120 Query: 209 LCAAGVVFLVLVLI-----------------YRILRQDN--------------------- 230 + A+ + + + LR N Sbjct: 121 MSASATAYFFAEYLGNNYDLTALALIGIIGDKQKLRGGNLEVVKRGLERGYLERREGLKM 180 Query: 231 ------------------KVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVAR 272 +L L+ V++ + L + + G+ + Sbjct: 181 ISGKVREVLLYSTEPFLNFYGNEDELDKFLEEVSVDGEKEFDELGKEEESRLANGIAIRL 240 Query: 273 RQGNPGLKALIERVNISSPITAENL--GYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 + N + + E + M+ +NA GR +++ + + D+S Sbjct: 241 LKMNCYPGIFEDVFGEKFYLKNELIKNSIMLSEVVNACGRKSANSIAFAICMRDESYL-- 298 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 ++ R E + E V+ + +++++ I P + + Sbjct: 299 -----EKAVSLWREFQEELLEE-----VVKRIEEVKEGFCIRYLIMEDAPTTGPIASILS 348 Query: 391 KEKF-GRPSFAISFEEDGKGIGSGRSI----EGFDIGKMVSFAVEEGILVKGGGHAMAAG 445 + F +P AI+ ++ G+ S R E ++G+++ A E+ GGGH++AAG Sbjct: 349 RYIFSDKPFIAINVKKSGEVKVSARGNEKLAEKVNLGEVMRKAAEKVG-GSGGGHSVAAG 407 Query: 446 LTVERVNFGRLCDFFQKFAHNIVP 469 + + + + Sbjct: 408 ANINSDKVEEFLKEVDRLCCSSLS 431 >gi|297619809|ref|YP_003707914.1| phosphoesterase RecJ domain-containing protein [Methanococcus voltae A3] gi|297378786|gb|ADI36941.1| phosphoesterase RecJ domain protein [Methanococcus voltae A3] Length = 468 Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 23/256 (8%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L++ KA I+ Y++ I+++ D DG S A++ LS + +I G Sbjct: 4 LSNMQKATNEILNHKYDN--IIVYTHIDTDGLNSRAVLEETLSRQGIFPEYRFLRQIDYG 61 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ----YATNQGIDVIVIDHHQVKSEEIP 190 + L+I D GS D + + +++ DHH + +++P Sbjct: 62 ------TIGDIPFGDYDLVIFADLGSGQIDMIDAQIKSMNIKPPKIVIFDHHLCQFKKMP 115 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 Y D L+G LC AGV +L + R L L A+ V Sbjct: 116 EYITNVNPSQDGLNGSIELCGAGVCYLFARGLSLDNRD---------LSKYALLGAIGDV 166 Query: 251 CD-VVPLIGLNRAYVVK-GLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAG 308 + L GLNR ++K L + +P L+ + + N Sbjct: 167 QNLNGKLEGLNRNVILKDALDLNLVSKSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDNDS 226 Query: 309 GRIGESNLGSRLLISD 324 I N ++ S+ Sbjct: 227 RIINFINHVNKKYDSE 242 >gi|270682530|ref|ZP_06222775.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] gi|270316294|gb|EFA28227.1| Single-stranded-DNA-specific exonuclease recJ [Haemophilus influenzae HK1212] Length = 122 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 214 VVFLVLVLIYRILRQDNKVP--LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVA 271 + F +++ + R+ + LLDLVAL TV DVVPL NR +GLM Sbjct: 1 MAFYLMLAVRAKFRELGIFTAETQPNFTDLLDLVALGTVADVVPLDQNNRILAYQGLMRI 60 Query: 272 RRQ-GNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQEL 329 R + PG+ AL E N + T+ +LG+ IGP +NA GR+ ++G LL++++ + Sbjct: 61 RARHCRPGIIALAEVANRNVEQFTSSDLGFCIGPRLNAAGRLDNMSIGVELLLANEMSKA 120 Query: 330 E 330 Sbjct: 121 R 121 >gi|15679421|ref|NP_276538.1| hypothetical protein MTH1422 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622535|gb|AAB85899.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 457 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 77/468 (16%), Positives = 136/468 (29%), Gaps = 77/468 (16%) Query: 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 PS +PD IL +A++ + + + I I D DG ++ ++ R +S + Sbjct: 7 PSSSSKLPD-SILKRGAEASKVLEEHLERGNIIRIISHNDADGLSAAGVVARAISSMNGQ 65 Query: 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 ++ I R+ + ++K E L D GS + + DVIV DHH Sbjct: 66 FHISILSRLKKEF------IKKLSGEKYSLFFFCDMGSAYLEEIS---RLKGDVIVADHH 116 Query: 183 QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYR------------------ 224 Q E + + L L G L A+G +L L+ R Sbjct: 117 QPSESEAGPHVVHINPHLHGLDGSRDLSASGTAYLATRLLNRKTAPLALVGALGDMQYTD 176 Query: 225 -------------------------ILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 L PL + + D+ +G Sbjct: 177 GFTGANRFIMEEAVEEGVLQVHSDLKLASRYTEPLYRSIAYTFNPALPGLTGDMEASMGF 236 Query: 260 -NRAYVVKGLMVARRQG-----------NPGLKALIERVNISSPITAENLGYMIGPSINA 307 V G+ + E +L I ++A Sbjct: 237 LENIGVSYGVKYPDLSPEERDVLRDELTRINPEIFGEVFTSREFRNIGDLS-DIAGVLDA 295 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQ 367 G+ + +G L + + +A++ L +N R L + T +++Q Sbjct: 296 CGKNRKYGIGIGLCLGEREG-ALDVALE---LQKNYREELVKGLAWIRREGSTTLENLQY 351 Query: 368 ASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-----EGFDIG 422 I + + P +S + S R+ G ++G Sbjct: 352 IYSEDKAFKGIMGTIASISLSLKILDPDIPLLGLSRMDQHV-KVSARTTRPAVERGVNLG 410 Query: 423 KMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 + A GGGH +AAG V + + Sbjct: 411 VALRDA-AASFGGTGGGHDIAAGAMVPYRDMESFLQLVDEILGTQTGP 457 >gi|302889072|ref|XP_003043422.1| hypothetical protein NECHADRAFT_24662 [Nectria haematococca mpVI 77-13-4] gi|256724338|gb|EEU37709.1| hypothetical protein NECHADRAFT_24662 [Nectria haematococca mpVI 77-13-4] Length = 386 Score = 62.5 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 108/346 (31%), Gaps = 53/346 (15%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 A + I + + ++ +I D DVDG S A++ R L ++ ++ I G Sbjct: 25 IKAARKFIQECVSAKQRTLIVPDRDVDGLTSGAILERTLVLLGLDKDLISVHTIRKGGRL 84 Query: 138 NPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + K + + I V D GS L A ++ IVIDHH + E P AL+ Sbjct: 85 DDDVSRKAMADYKPAFIFVLDHGSQQSPPLIDAPHR---AIVIDHHYAEENEHPQDALLV 141 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 ++ + +L+ + ++ +++ + L L L L + P Sbjct: 142 TADNSPP----VATSSLLTYLICLDLHEEVKE-----ICDWLCVLGTLGELGNMVKWEPP 192 Query: 257 IGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 + + + + Y I+A R ++ Sbjct: 193 FPN--------------------------MKPTIEMHKTGIIYQAISLIHAPRRTAACDV 226 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQN------RRLMESAMLEQAEAKVLTQCDDIQQASV 370 + A L ++ RR + + ++ D + + Sbjct: 227 TIAW-------KALRAASSPKELTKDKNLVAARREIHEEFMRCNKSAAPRFSADGRVVVI 279 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF-EEDGKGIGSGRS 415 + + HP I A+ L + G S R Sbjct: 280 YLSSEAQVHPLIASRWASYLYTDLVEVVLVANEGYSPGMVSFSCRV 325 >gi|71023345|ref|XP_761902.1| hypothetical protein UM05755.1 [Ustilago maydis 521] gi|46100721|gb|EAK85954.1| hypothetical protein UM05755.1 [Ustilago maydis 521] Length = 576 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 119/401 (29%), Gaps = 22/401 (5%) Query: 78 CDKAARRIVQ--AIYNSEKIMIFGDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIV-- 132 +AA + A S++I++ D D DG +S +M R L ++ P RI Sbjct: 139 MQEAADFLRACAASSRSDRILLVPDKDADGLSSGVIMYRTLVQALGID-----PSRIDIH 193 Query: 133 ---DGYGPN-PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 G + S + GA+ II +D GS + L G ++ + + Sbjct: 194 LMTKGSNLSAESQRDSMSKYGAKWIIVLDQGSRNGPPLVPGAENGWKYEHVEAVRTMVVD 253 Query: 189 IPAYALVNPNRLDDLSGQ-GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVAL 247 A P L H L+ ++ R L + L D + + L Sbjct: 254 HHWLAEGEPGPEGCLMLNACHHKPVATASLLTWVLCRPLWSEETAELAQDRIDYV--AVL 311 Query: 248 ATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINA 307 T+ D+ + + + V + L + I +N ++ +++ Sbjct: 312 GTMGDLSVNVEWDPPFPDLTCEVKKWTK-KRLGSAIALLNAPRRTPDFDVITAWSALLSS 370 Query: 308 GGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQN--RRLMESAMLEQAEAKVLTQCDDI 365 + + + + + +M+A++ + + + + I Sbjct: 371 KSPLTILDPATNRHAARLYEARDMVALETERCTHTPPKFSKDGRVALLRITSAYQVHPSI 430 Query: 366 QQASVIVVEGDRWHPGIVGL--LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGK 423 ++ + L R + + I + + Sbjct: 431 ATRWTGALKSKNLQVVMCANDGYNQGLVNFSCRIAQVAKKRGEEVNIIQVLNSYADTDPE 490 Query: 424 MVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFA 464 + GH A+G + +F + + Q Sbjct: 491 WKKEVTDALGGNAFNGHPQASGGIFPKEHFDKFYELMQIGV 531 >gi|84488840|ref|YP_447072.1| putative single-stranded-DNA-specific exonuclease [Methanosphaera stadtmanae DSM 3091] gi|84372159|gb|ABC56429.1| putative single-stranded-DNA-specific exonuclease [Methanosphaera stadtmanae DSM 3091] Length = 455 Score = 62.1 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 20/196 (10%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D+A + I + I D DG S + + ++ I R+ Sbjct: 8 YLLNRADEACNLLRLHIEKGHVVRIISHNDADGLTSAGIFANAIKKAGGKFHITILPRLR 67 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 D +++ +L I D GS + +++ DVI+ DHHQV P Sbjct: 68 DS------NVKELNKSRYKLFIFSDMGSGNLESIS---KLKGDVIIADHHQVPEGVNPEI 118 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD 252 + N + ++ + + L+ +L LA Sbjct: 119 QVDNKEIIHVNPHIFNIDGT-----------KEVSGSGLSYLSVHGYEYYELAGLALTGA 167 Query: 253 VVPLIGLNRAYVVKGL 268 + N + L Sbjct: 168 YGDMQFKNGPQGINKL 183 >gi|110669551|ref|YP_659362.1| single-stranded-DNA-specific exonuclease [Haloquadratum walsbyi DSM 16790] gi|109627298|emb|CAJ53788.1| single-stranded-DNA-specific exonuclease [Haloquadratum walsbyi DSM 16790] Length = 489 Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 12/205 (5%) Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 +P P + A+R+ A E++++ D DG S A+ ++ L + Sbjct: 11 SDTIPVPELEQKATACAKRLRAA----ERVLVASHIDADGLTSAAIAVQALKRADIQCEA 66 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQV 184 +++ G +++ ++ D GS D + G + ++ DHHQ Sbjct: 67 VFANQLDAG------EIKRIAASKYDTVLFTDFGSGQLDIIDPYVRNGDFEAVIADHHQP 120 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 A L+ L + ++ + L D N DL +L + Sbjct: 121 AMTHDDNPAFSLQYHLNPLLVGIDGASQLSGAGASYILAQALESDTTETDNRDLAALAVV 180 Query: 245 VALATVCDVVP-LIGLNRAYVVKGL 268 A+ + L G N A V +G+ Sbjct: 181 GAVGDMQSSTDGLTGANAAIVEQGI 205 >gi|284162244|ref|YP_003400867.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM 5631] gi|284012241|gb|ADB58194.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM 5631] Length = 429 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 27/200 (13%) Query: 75 LTDCDKAARRI-VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D KA R ++ + + + IF YD DG + A++ L + + R + Sbjct: 1 MLDILKAIAREGIKFVEKHDFVRIFTHYDPDGITAGAIIATALIRLGKDFQV----RFLK 56 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 G + L+I D GS D + D IV+DHH Sbjct: 57 GLNEEVEYDKD------DLVILSDMGSGYPDVVSKIE---ADTIVVDHHIPTGRIEKDNL 107 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + L L G L A+G ++ ++ L + + + D Sbjct: 108 VHINPHLAGLDGTYELSASGTAYVFANVLGDN-------------RDLAGIALVGAIGDK 154 Query: 254 VPLIGLNRAYVVKGLMVARR 273 + G N + +G+ Sbjct: 155 QKMKGGNAEILREGIESGYI 174 >gi|282163338|ref|YP_003355723.1| single-stranded DNA-specific exonuclease RecJ [Methanocella paludicola SANAE] gi|282155652|dbj|BAI60740.1| single-stranded DNA-specific exonuclease RecJ [Methanocella paludicola SANAE] Length = 469 Score = 60.9 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 106/383 (27%), Gaps = 35/383 (9%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR 130 + + KAA + I ++ ++ D DG + +M + L P Sbjct: 5 NGDTMQRFRKAAELCAERIKKCDEAVVVSHIDADGLTAAGIMCKALDRLGR------PHE 58 Query: 131 IVDGYGPNPSLMEKFINEGA-QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 + + ++ + A +L+I D GS + ++ GID +V DHH+ E Sbjct: 59 EKFVKKLDDAALKGIADFSAGKLVIFTDLGSGALASI---KALGIDAVVTDHHRPAPVEY 115 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 + + L + S + + + + L V DL + + Sbjct: 116 EYHMNPHLYGL-NGSTEISGAGVSFLLSLCLGDNVDLGSLAIVGAVGDLQDMRTNALVGV 174 Query: 250 VCDVVPLIGLNRAYVV-KGLMVARRQGNPGLKALIERVNISSPI--TAENLGYMIGPSIN 306 ++ L K + + RQ P K L + P E+ Sbjct: 175 NRQILDLATSKGYIAYEKDIKLFGRQTRPVYKLLQYSSDPFIPGLSGCEDACIAFIEGAG 234 Query: 307 AGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQ 366 + L + L ++ + E +++ Sbjct: 235 IPIKKDNWRRWIDLGQGEKKSLTSRLFQYCMACGMPSHKIQRLVGEVYTLLKEEPGTELR 294 Query: 367 QASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR---------SIE 417 AS LL A + + A+ + G+ R + Sbjct: 295 DAS-----------EYSTLLNATARYDYADVGLAVCMGDRGEAFHYARDLLESHRHNLVN 343 Query: 418 GFDIGKMVSFAVEEGILVKGGGH 440 G ++ L H Sbjct: 344 GLNL-VADKGVCRMNNLQYFHAH 365 >gi|315230660|ref|YP_004071096.1| single-stranded-DNA-specific RecJ-like exonuclease [Thermococcus barophilus MP] gi|315183688|gb|ADT83873.1| single-stranded-DNA-specific RecJ-like exonuclease [Thermococcus barophilus MP] Length = 472 Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 89/266 (33%), Gaps = 25/266 (9%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 + A I I I I D DG + A++ + ++ N ++ I + Sbjct: 12 EGAELIKMHIELGHTIRIISHRDADGITAGAILAKAIAREGGNFHLSI------VKQLSE 65 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNP 197 L+ + NE ++ + D GS S ++ V++ DHH + + + LVNP Sbjct: 66 DLITELANEKQKIYVFSDLGSGSIKLIE-KHLSDASVVIADHHPPEDGEIKNDNHILVNP 124 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + S L +GV + V I R L L + V D+ + Sbjct: 125 TQFGADSV-RDLSGSGVAYFVAREINEKNR------------DLSYLALVGAVGDMQEID 171 Query: 258 GLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLG 317 G + + A+ ++ I + + L Y P I G+ Sbjct: 172 GQFHGMNLDIIEDAKELDLIEIRKEIRLYGRETRKLYQMLAYATNPEI--PEITGDERKA 229 Query: 318 SRLLISDDSQELEMLAMKLDVLNQNR 343 L + +M +L + R Sbjct: 230 IEFLRAKGFDP-DMYYWQLREEEKKR 254 >gi|88603522|ref|YP_503700.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1] gi|88188984|gb|ABD41981.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1] Length = 468 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 67/473 (14%), Positives = 137/473 (28%), Gaps = 93/473 (19%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L D AA A+ + E++ I D DG +S A++ + LS + + Sbjct: 2 SLLEDIRAAAD----AVRSCEEVTIISHIDADGISSEAILAQALSRDGIRVST------T 51 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPA 191 +P +++ I + + L I D GS L + I+IDHH +E Sbjct: 52 FVRQLDPLTLDQ-IPDDSSLKIFSDLGSGQQQMLLEKGLEPSRTIIIDHHVSQPAEHGDP 110 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD--LVALAT 249 + VN + AAGV +L+ + I K+ + ++ ++D + L Sbjct: 111 FIEVNCLNHG----HEKMSAAGVSYLLARELDSINTDLAKLAIIGNIGDMMDREHLCLTG 166 Query: 250 VCDVVPLIGLNRAYV---VKGLMVARRQGNPGLKALIERVNIS----------------- 289 + G+ + V L + P ++L ++ Sbjct: 167 PAREILQDGVRQGTVELWEHDLNIYGISTRPLPQSLAYSDDMDIPGVSRDPDGAGKFLER 226 Query: 290 ---------SPITAENLGYMIGPSINAGGRIGESNLG---------SRLLISDDSQEL-E 330 E+L + + G L +D + Sbjct: 227 IGITPIQPNRWPVWEDLSFDQKQQVCCAVIEQMVAHGKDTGRLFADHYLFPDEDRHQASL 286 Query: 331 MLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAA-- 388 A + + + + L A + + ++ + ++ + Sbjct: 287 RNASEFATMLNSCGRWQRPELGGAICRGDRMVAYREAEHMLRNHRSKIREVMLYITETGV 346 Query: 389 ---------RLKEKFGRPSFAISFE--------------------EDGKGIGSGRSIE-- 417 + +F I + S R+ Sbjct: 347 TELSHMLYIHVGGRFPDTIVGIGAGMALSRLNPEKPILIMCEDSLDPSMTKISMRTRPEV 406 Query: 418 ---GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNI 467 G D+ + ++ A E GGGH +AAG + + + + Sbjct: 407 VSKGVDLQQALTLACEGREGCSGGGHRIAAGAFIPKEEERAFIEDVNRILAQQ 459 >gi|57641187|ref|YP_183665.1| ssDNA-specific exonuclease [Thermococcus kodakarensis KOD1] gi|57159511|dbj|BAD85441.1| ssDNA-specific exonuclease [Thermococcus kodakarensis KOD1] Length = 477 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 88/285 (30%), Gaps = 22/285 (7%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 + A I I I + D DG + A++ + ++ + I + Sbjct: 12 EGAELIKMHIELGHTIRLISHRDADGITAGAILAKAVAREGGTFQLSI------VKQVSE 65 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+++ E ++ + D GS S + ++ N V+ H K ++ Sbjct: 66 ELIDQLAREKREIYVFSDLGSGSIELIEEKLNFATVVVADHHPPEKDSFSTDSHVLVNPV 125 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 + L +GV + V + R R + + + V D+ + G Sbjct: 126 PFGANSVRDLSGSGVAYFVAREMNRKNR------------DMAYVAIVGAVGDMQEIDGT 173 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 ++ + + G ++ + S + L Y P I G+ Sbjct: 174 FHGLNLEIIEDGKELGILEVRKELRLFGRESRPLYQMLAYATNPEI--PEITGDERKAIE 231 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 L + + R+L E+ ++ + + D Sbjct: 232 WLRAKGFDPEMKYWQ--LREEEKRKLHEALLVHMIKHGAPKEAID 274 >gi|20093501|ref|NP_613348.1| single-stranded DNA-specific exonuclease [Methanopyrus kandleri AV19] gi|19886333|gb|AAM01278.1| Single-stranded DNA-specific exonuclease [Methanopyrus kandleri AV19] Length = 340 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 63/339 (18%), Positives = 112/339 (33%), Gaps = 71/339 (20%) Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI--PDRIVDGYGPNPSLMEKFINE 148 E++ + D DVDG AS A++ L++ + +Y P + I Sbjct: 19 KDERVAVISDIDVDGLASAAILGHVLNNVGADFVLYFSPPANFEEVVS--------GIAP 70 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 ++I D GST A+ A ++G VIV+DHHQV + P + + Sbjct: 71 ECDVLIAADLGSTGETAIHDAKSEGCRVIVVDHHQVLEDVRPDVFIHDTR---------- 120 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 LCAA + + V ++ DL +A + + L Sbjct: 121 LCAAELCYWATVDLHER-----------------DLRLIAAYAAFTDYAEEYSRVLRETL 163 Query: 269 MVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 + R+ +L++ A R+ + L ++ Sbjct: 164 KMYDRRKVYTEASLLDY---------------------ALIRMDGEDRRELALKLPETP- 201 Query: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEA-KVLTQCDDIQQASVIVVEGDRWHPGIVGLLA 387 + L++ L AM E+ E + + + V D HP + G +A Sbjct: 202 -------VSELDEVYELARDAMAEEHEVLRRAREVAECLNEVVAYAIMDDVHPAMTGRVA 254 Query: 388 ARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 + + RP S R +EG +I + Sbjct: 255 SHVAGVKRRPVGVCVRRG----KISARVVEGEEIDVARA 289 >gi|212223666|ref|YP_002306902.1| ssDNA-specific exonuclease [Thermococcus onnurineus NA1] gi|212008623|gb|ACJ16005.1| ssDNA-specific exonuclease [Thermococcus onnurineus NA1] Length = 476 Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 100/291 (34%), Gaps = 27/291 (9%) Query: 78 CDKA---ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 +KA A I I I I D DG + A++ + + + + I ++ +G Sbjct: 7 LEKAREGAELIKMHIELGHTIRIISHRDADGITAGAILAKAILREGGSFQLSIVKQLSEG 66 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 L+++ E ++ + D GS S + ++ +G V+V DHH + E + Sbjct: 67 ------LIQELAAEKHKIYVFSDLGSGSIELIEKY-LEGATVVVADHHPPEKNEFSTDSH 119 Query: 195 VNPNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 + N + + L +GV + V + R L + + V D+ Sbjct: 120 LLVNPVPFGANSVRDLSGSGVAYFVAREMNEKNR------------DLAYIAIVGAVGDM 167 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 + G + + +R G ++ + S A+ L Y P I G+ Sbjct: 168 QEIDGTFHGMNLDIIEDGKRLGILEVRKELRLFGRESRTLAQMLAYATNPEI--PEITGD 225 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 L + + RRL ++ ++ + + D Sbjct: 226 DRKAIEFLRAKGFDPDMKYWQ--LREEEKRRLHDALVIHLIKHGAPKEAID 274 >gi|91774252|ref|YP_566944.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM 6242] gi|91713267|gb|ABE53194.1| Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase [Methanococcoides burtonii DSM 6242] Length = 437 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 71/456 (15%), Positives = 136/456 (29%), Gaps = 83/456 (18%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + + A +I I + D DG +S A++ + L ++ ++ I R+ D Sbjct: 4 MQKISELAEQIADIIEEYSHARVISHNDADGISSAAIICQALLRKNIPYHLTIVSRLEDS 63 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 + ++I D GS D + D IVIDHH + PA A+ Sbjct: 64 VAEMINET----TNEGDIVIFCDMGSGQPDIIGKVL---HDTIVIDHH-KPVGDSPAKAM 115 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLV------------LIYRILRQDNKVPLNFDL---- 238 +NP+ HLC A +LV I + + Sbjct: 116 INPHMFGIDGA-VHLCGATTTYLVAKGLDHENVDLAGIAIAGAVGDKQLFETANKIILDE 174 Query: 239 ----------------------------LSLLDLVA----LATVCDVVPLIGLNRAYVVK 266 LD+ + + D++ + G + Sbjct: 175 AVEAGVISIKKGLKVGSGDIADILENTPEPYLDITGDREKIDSFLDMLEIHGDIDSMDSD 234 Query: 267 GLMV------ARRQGNPGLKALIERVNISSPITAENL--GYMIGPSINAGGRIGESNLGS 318 L + +A+ V + E + Y + +N G+ L Sbjct: 235 KLQKLISTIVLKLTKRASPEAIDAAVGDVYILNNEVVKNVYDLVAIMNTCGKKKVPGLAL 294 Query: 319 RLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRW 378 L + DD L++ + + + + + S+ + GD Sbjct: 295 ALCMRDD-----------STLDEAKEMTTQSQKAIVNDINKAEGLLQKGKSIYYLIGDDL 343 Query: 379 HPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSI-----EGFDIGKMVSFAVEEGI 433 + + ++ F + +GK S R +G D+ + A + + Sbjct: 344 -ESTGMIASTVIRYIHPDMPFVAINKVEGKVKISSRGTRELVSKGLDLAYAMRTA-ADAV 401 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVP 469 +GGGH +A+G +VE + Sbjct: 402 GGQGGGHNIASGASVEPEKIEEFIALVDDIVAEQLS 437 >gi|319938091|ref|ZP_08012491.1| hypothetical protein HMPREF9488_03327 [Coprobacillus sp. 29_1] gi|319806997|gb|EFW03636.1| hypothetical protein HMPREF9488_03327 [Coprobacillus sp. 29_1] Length = 268 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 15/205 (7%) Query: 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE----EDGKGIGSGRSIEGFDI 421 + + ++ H G++G+LA+ + G P+F ++ GSGR +E ++ Sbjct: 3 DKHKINLIVQKELHEGVLGILASHYTNQNGYPTFVLTDCTIESGQKAWKGSGRGVEELNL 62 Query: 422 GKMVSFAVEE-GILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID 480 ++S +E G L GGHA A G+TV N + + + + + Sbjct: 63 YDILSQVQDETGTLYTFGGHAGAVGVTVLDENIEQFKSKITEIVEDRLAHSSYAKNYIQL 122 Query: 481 GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFP-NHKLQSIRVVNLAHLQMTFESQDSE 539 + + + ++ P+G G P+ N K ++ H + + D Sbjct: 123 TTIEQRK---EIAEAVKELKPFGNGLRLPIVELSYNVKEINLYY-KSKHAKFLHKEPDKS 178 Query: 540 TLQAIA-----FRVYGTPLGEFLMQ 559 + I + G + L Sbjct: 179 GTKTIWNNFELWNYGGLEEAKILCN 203 >gi|307254247|ref|ZP_07536088.1| hypothetical protein appser9_4980 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306862794|gb|EFM94747.1| hypothetical protein appser9_4980 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 56 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Query: 532 TFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 E AI F + + K + L +N ++G+K QLR+ + Sbjct: 1 MVEQPFGGLFDAIWFNADLRIFPDLSI----KSARLIYKLDINEFKGNKNLQLRIENI 54 >gi|46114980|ref|XP_383508.1| hypothetical protein FG03332.1 [Gibberella zeae PH-1] Length = 485 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 73/223 (32%), Gaps = 23/223 (10%) Query: 52 VSIDYAKDFLN-PSIRL-----LMPDPLILTD-CDKAARRIVQAIYNSEKIMIFGDYDVD 104 V+ D ++ PS R + P P D + A I + + S+ +I D DVD Sbjct: 67 VTTDKLPEYHETPSKRDKDGEIIWPAP---KDQMEAARNFIRECVAASKPTLIIPDKDVD 123 Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN-PSLMEKFINEGAQLIITVDCGSTSY 163 G S A++ + L ++ + + G + + I +D GS Sbjct: 124 GLTSGAILRKTLILMGLDPELISAYVMKKGLNVHDEESRRDMASYKPSFIFVLDQGSRES 183 Query: 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 + ++ +VIDHH + ++ P A L+ LI Sbjct: 184 PPVIDEPHR---ALVIDHHYAEEKDHPKDATFVTACN--------SPPVATSSLLTYLIC 232 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 R L D L ++ L P +A K Sbjct: 233 RDLHPD-VEETCNWLCAMGVHGDLGNAIKWEPPFPDFKAMFKK 274 >gi|330506679|ref|YP_004383107.1| phosphoesterase, RecJ domain-containing protein [Methanosaeta concilii GP-6] gi|328927487|gb|AEB67289.1| phosphoesterase, RecJ domain protein [Methanosaeta concilii GP-6] Length = 481 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 25/207 (12%) Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 +I ++I++ D DG + A++ L +++ + + +E+ Sbjct: 26 DSICRQKEILVVSHVDADGLTAAAIICAALDRHNIDYKPLF------FRQLDENALEEVA 79 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 ++GA L+I D GS + + + IV DHH+ K+ A +NP+ + Sbjct: 80 DQGADLVIFTDLGSGMIQEIL---ERNLQAIVADHHKPKACPAQPLAHINPHLVGADGAN 136 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 L +G FL+ + ++ + + ++ DL +A+ LIGLNR + Sbjct: 137 Q-LSGSGSAFLLARALASSPGANDDLAALAVVGAVGDLQDMASG----QLIGLNRYILDI 191 Query: 267 G-----------LMVARRQGNPGLKAL 282 G + + +Q P K L Sbjct: 192 GSRAGAVHFSRDIKLFGKQTRPVYKML 218 >gi|150399730|ref|YP_001323497.1| phosphoesterase domain-containing protein [Methanococcus vannielii SB] gi|150012433|gb|ABR54885.1| phosphoesterase RecJ domain protein [Methanococcus vannielii SB] Length = 467 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 24/188 (12%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L++ KA + + + + I++ D DG S ++ + L +++A +I Sbjct: 4 LSNLKKAVKTLRK--NRDKSILVCTHIDTDGLNSRIILEKVLERLNISAEFLFLRQID-- 59 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ---YATNQGIDVIVIDHHQVKSEEIPA 191 I LII D GS D ++ + + +I++DHH V +E+IP Sbjct: 60 -----YETIDEIPFEHDLIIFADLGSGQIDLIKEKLFEIKKNPHIIILDHHIVSNEKIPE 114 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 + D + G +C AGV +L + L L V Sbjct: 115 NIINVNPHNDGIDGGKEICGAGVSYLFAKVCN------------PRFTDLAKYAVLGAVG 162 Query: 252 DVVPLIGL 259 DV L G Sbjct: 163 DVQNLEGN 170 >gi|288932464|ref|YP_003436524.1| phosphoesterase DHHA1 [Ferroglobus placidus DSM 10642] gi|288894712|gb|ADC66249.1| phosphoesterase DHHA1 [Ferroglobus placidus DSM 10642] Length = 453 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 56/345 (16%), Positives = 108/345 (31%), Gaps = 38/345 (11%) Query: 83 RRIVQAIYNSEKI------MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 I +A SE+I +I D DG S A+ LS +A + ++ + Sbjct: 2 DLIKKAYEISERIKKEDEFLIVTHIDADGITSGAIAFETLSRIGKDAKIIFLKQLDE--- 58 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + I + + + D GS + L ++ ++ DHH + + Sbjct: 59 ----KAAEKIADENRFVWLTDLGSGNISLLLRRK---LEFVISDHHVPEMTYKWQLNPHD 111 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV--V 254 L + +LV + LN+DL L + A+ + D Sbjct: 112 FGYDGSY----DLSGSTTTYLVSRCL----------GLNYDLSPLAIVGAVGDLQDSREA 157 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMI-GPSINAGGRIGE 313 L+GLNR + + + L+ ++ + + G S N G I Sbjct: 158 KLVGLNRFVLEEAIKYGYLNAIKDLRFFGKQTRPVYKMLEYTFDPYLPGISGNEKGAIEF 217 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVL---NQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 + + +D L+ + R ME+ + K++ + + + Sbjct: 218 LSSLGVEVKREDWVRWIDLSREEKRKVVSGIVRVCMEAGYSYELIKKIVGETYVLLEEEE 277 Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 D LL A + F + + K R+ Sbjct: 278 GTELRDAM--EYSTLLNATARYGFEEVGLRVCLGDRDKHFRKARA 320 >gi|213582646|ref|ZP_03364472.1| ssDNA exonuclease RecJ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 102 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVI-VVEGDRWHPGIVGLL 386 E +LA +LD LNQ R+ +E M +A + + WH G+VG+L Sbjct: 4 EARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGIL 63 Query: 387 AARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMV 425 A+R+KE+F RP A + DG GSGRSI+G + Sbjct: 64 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAS 102 >gi|298675921|ref|YP_003727671.1| phosphoesterase RecJ domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288909|gb|ADI74875.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum Z-7303] Length = 471 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 30/199 (15%) Query: 75 LTDC-DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + + + A + + + I + + + D DG S ++ + L +N + ++ + Sbjct: 7 MQEMRNHAVKCVEE-ITKYDTVHVVSHIDADGLTSAGIICKALQRRGINYSTRFLKQLDE 65 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 +E +E +L+I D GS + + + GI+ ++ DHHQ K + Sbjct: 66 S------AIEDIASENHELVIFTDLGSGMIEEI---KSAGINAVISDHHQPKGDTKILQT 116 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +NP+ ++G L +G ++ + +L +N L DL + D Sbjct: 117 HLNPHIFG-VNGSSELSGSGTTYI----LASVLGDNN---------DLADLAIVGATGDF 162 Query: 254 VPLI-----GLNRAYVVKG 267 G+NR + +G Sbjct: 163 QHSKKGYLTGINRLILQEG 181 >gi|11498342|ref|NP_069569.1| hypothetical protein AF0735 [Archaeoglobus fulgidus DSM 4304] gi|2649876|gb|AAB90503.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 457 Score = 57.5 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 19/198 (9%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +AA + I +E++++ D DG + + L V + + R V Sbjct: 5 LKRAAE-LAGRILKNEEVLVVTHIDADGITAGTIAHTSLLRAGVESGI----RFVKQLDE 59 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + + I + + D GS + L GI+ + DHH +S +NP Sbjct: 60 SEI---EAIKDENTFVWFTDIGSGVLNMLD-----GIEFAITDHHLPQSHHP---MQLNP 108 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD--VVP 255 + L A +LV + + N DLL + + A+ + D Sbjct: 109 HDFGYDGAF-ELSGATTTYLVSKYLRNGRTLFDYENDNSDLLPISIVGAVGDLQDSRWGM 167 Query: 256 LIGLNRAYVVKGLMVARR 273 L GLNR V++GL + Sbjct: 168 LKGLNREIVMEGLRKKQI 185 >gi|11498306|ref|NP_069533.1| hypothetical protein AF0699 [Archaeoglobus fulgidus DSM 4304] gi|2649915|gb|AAB90540.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 438 Score = 57.1 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 29/190 (15%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 ARR + + I I+ +D DG ++ A++ + L ++ + + + Sbjct: 14 ARRAADLVARHDFIRIYTHHDADGISAGAIIAKALLKAGKAFHITFLKGLNEPFE----- 68 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNR 199 E +L++ D GS D + DV+++DHH E P A VNP+ Sbjct: 69 -----YEQGELLLFADMGSGYADLISQV---DTDVVILDHHIPNGEIRPKRNLAHVNPHL 120 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 + L A+GV + + R L + + + D ++G Sbjct: 121 VGMDGTF-ELSASGVCYFFANELGRN-------------RELASVALIGALGDKQRMVGG 166 Query: 260 NRAYVVKGLM 269 N + GL Sbjct: 167 NEEILRNGLE 176 >gi|119719428|ref|YP_919923.1| phosphoesterase domain-containing protein [Thermofilum pendens Hrk 5] gi|119524548|gb|ABL77920.1| phosphoesterase, RecJ domain protein [Thermofilum pendens Hrk 5] Length = 465 Score = 57.1 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A + + + + E +++ YD DG +S++LM+ FL V + R+V+ +P Sbjct: 12 AEFMSKLLESREWVLVVSHYDADGLSSLSLMLYFLWSHGVPFHA----RLVEQ--VDPRT 65 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 +E+ I +D GS ++ G ++++IDHH S + + Sbjct: 66 LEELPLGEYDYAIFLDLGSGYKHLIERYAE-GKNILLIDHHVPSSPKGEECCVEINPYRV 124 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 L+G A+ + +L+L + + + V L L LDL Sbjct: 125 GLNGSEEASASTLTYLLLRSLDEKVEKMVHVALVGALGDRLDL 167 >gi|240102921|ref|YP_002959230.1| recJ-like single-stranded exonuclease recJ-like protein (recJ) [Thermococcus gammatolerans EJ3] gi|239910475|gb|ACS33366.1| recJ-like single-stranded exonuclease recJ-like protein (recJ) [Thermococcus gammatolerans EJ3] Length = 476 Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 90/285 (31%), Gaps = 22/285 (7%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 + A I I I + D DG + A++ + ++ + + I + Sbjct: 12 EGAELIKMHIELGHTIRLVSHRDADGITAGAILAKAIAREGGSFQLSI------VKQVSE 65 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+++ E + + D GS S + + + V++ H + + L+ Sbjct: 66 ELLKELAEERRDVYVFSDLGSGSIELIDKYLDFATVVVIDHHPPEREKFSVDSHLLVNPV 125 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 + L +G + V + R R+ L + + V D+ + G Sbjct: 126 PFGANSVRDLSGSGAAYFVAREMNRANRE------------LAYIAIVGAVGDMQEIDGT 173 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 + + + G ++ + S + L Y P I G+ Sbjct: 174 FHGMNLDIIEDGKELGILEVRKELRLFGRESRPLRQMLAYATNPEI--PEITGDERKAIE 231 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 L + + + +RL ++ +L + V + D Sbjct: 232 WLRARGFDPDKHYWQ--LREEEKKRLHDALVLHMIKHAVPKEMID 274 >gi|161529017|ref|YP_001582843.1| phosphoesterase DHHA1 [Nitrosopumilus maritimus SCM1] gi|160340318|gb|ABX13405.1| phosphoesterase DHHA1 [Nitrosopumilus maritimus SCM1] Length = 473 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 9/143 (6%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 ++ I + + I + D DG S +++ + L N + + +++ Sbjct: 14 DKVTDCIRSKKSIFVTTHIDCDGLTSGSIITKALIRAGANCT------VRTSKEFSKNVV 67 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + F + I D G L G + IV+DHHQ+ EEI ++N + Sbjct: 68 DSFKTDSRDFHIVTDLGGGFGKDLN--ETLGDNWIVLDHHQIPDEEIENPNVINAWKYGI 125 Query: 203 LSGQGHLCAAGVVFLVLVLIYRI 225 G +CA G+ +L + + Sbjct: 126 DGGL-EICAGGMAYLASMALDEK 147 >gi|304313788|ref|YP_003848935.1| single-stranded-DNA-specific exonuclease [Methanothermobacter marburgensis str. Marburg] gi|302587247|gb|ADL57622.1| predicted single-stranded-DNA-specific exonuclease [Methanothermobacter marburgensis str. Marburg] Length = 458 Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 10/160 (6%) Query: 69 MPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 +PD IL +A++ + + + I + D DG ++ ++ R +S + ++ I Sbjct: 13 LPD-SILKRGSEASKLLEEHLEKGSIIRVISHNDADGLSAAGVVARAISSRNGQFHISIL 71 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 R+ + ++K E L D GS + + D+IV DHHQ E Sbjct: 72 SRLRKEF------IKKLGREKYSLFFFCDMGSAYLEEIS---RLKADIIVADHHQPSEFE 122 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ 228 + + L L G L A+G +L I R Q Sbjct: 123 ADSNVVHVNPHLHGLDGSRDLSASGAAYLATRNISRNTGQ 162 >gi|282164413|ref|YP_003356798.1| putative single-stranded-DNA-specific exonuclease RecJ [Methanocella paludicola SANAE] gi|282156727|dbj|BAI61815.1| putative single-stranded-DNA-specific exonuclease RecJ [Methanocella paludicola SANAE] Length = 435 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 43/210 (20%) Query: 75 LTDCDK----------AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 ++D K A I + + + +D DG + ++ L ++ Sbjct: 1 MSDMSKLDELSSLTRPAVN----KIKAQQFVRVVSHHDADGITACGIICHMLQRLNIPFQ 56 Query: 125 MYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 I + + + E + +I D GS D + +++DHH V Sbjct: 57 ATIVSNLDHSI--------EKLIEPGEFVIFCDMGSGQPDIV-----NKYQAVILDHHMV 103 Query: 185 KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 + + + +D S + +GV + + R++ ++ L L Sbjct: 104 LDGQKQIHVNPHLIGIDGGS---EVSGSGVAYS----LARMMGKN---------ADLAGL 147 Query: 245 VALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + D ++ +N+ + +G+ Sbjct: 148 AISGAIGDKQKMVSVNKDILNEGVNSGAIT 177 >gi|207093494|ref|ZP_03241281.1| single-stranded-DNA-specific exonuclease (recJ) [Helicobacter pylori HPKX_438_AG0C1] Length = 89 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 122 NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 + + IP+R +DGYG + +EK A LIITVD G +++A ++ + +I+ DH Sbjct: 5 HVRIAIPNRFMDGYGISKKFLEK---HHAPLIITVDNGINAFEAARFCKEKNYTLIITDH 61 Query: 182 HQ-VKSEEIPAYALVNPNRLDDLSGQGH 208 H E AYA++NP + D Q Sbjct: 62 HCLHHDEVPDAYAVINPKQPDCDFIQKE 89 >gi|15645053|ref|NP_207223.1| hypothetical protein HP0425 [Helicobacter pylori 26695] gi|2313533|gb|AAD07494.1| predicted coding region HP0425 [Helicobacter pylori 26695] Length = 417 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 59/417 (14%), Positives = 130/417 (31%), Gaps = 56/417 (13%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL------IITVDC--------------------GSTSYDALQYATNQGID 175 + +++ ++ +DC + + + Sbjct: 76 LNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAANTELQEILLEHFEQC 135 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 +I H + + I + N D+ + A + + Sbjct: 136 IITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQI---------FQTQT 186 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPIT 293 L +L+A+ + D + L + +V L A+ + + Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDDLDEI 244 Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 + G+ INA R+ G + L+ + + + + + +R Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYN 304 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKF-GRPSFAISFE 404 + E++ Q + V +++ G+ GL+A +K+ S I + Sbjct: 305 DIKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRD 364 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS R F ++ L++ GGH A GL+ + +F ++ Q Sbjct: 365 NKDGYSGSARGGGNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQ 415 >gi|294496451|ref|YP_003542944.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM 5219] gi|292667450|gb|ADE37299.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM 5219] Length = 455 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 31/191 (16%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I + + + D DG S ++ + L +N + + +++E N Sbjct: 12 IQKHDSVYVVSHIDADGLTSAGIICKALQRAGINYE------MRFVKQLDDNIIEDIANI 65 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 +L I D GS D++ +GI+ IV DHH +NP+ Sbjct: 66 NPELAIFTDLGSGMLDSI---NAKGINAIVSDHH---QPRGEGKYHLNPHLFGANGSYQ- 118 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-----GLNRAY 263 L +G +++ I + L+D+ + + D+ L G+NR Sbjct: 119 LSGSGTTYILANEIGQN-------------TDLVDIAMVGAIGDMQHLKKGHLTGVNRLL 165 Query: 264 VVKGLMVARRQ 274 + +G+ Sbjct: 166 LEEGVKNGHLS 176 >gi|288560803|ref|YP_003424289.1| ssDNA exonuclease RecJ2 [Methanobrevibacter ruminantium M1] gi|288543513|gb|ADC47397.1| ssDNA exonuclease RecJ2 [Methanobrevibacter ruminantium M1] Length = 480 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 19/149 (12%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D + + I +SE I I+ D DG +S A++ L + + I Sbjct: 7 PDMKQKYEEAKELIESSEDIKIYSHTDCDGISSGAILSTILKRIGKDYEIEI-------- 58 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH------QVKSEEI 189 N ++E + +L I D GS + + ++++DHH Sbjct: 59 -VNLDVLED-LEIEHELTIFSDLGSGQ--PVDKHAKKDSKILILDHHPPLREMDYPDSVE 114 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 Y +NP D + G +C G+ +L+ Sbjct: 115 YTYLEINPMFHD-IDGSQEICGGGLCYLL 142 >gi|288561353|ref|YP_003424839.1| ssDNA exonuclease RecJ1 [Methanobrevibacter ruminantium M1] gi|288544063|gb|ADC47947.1| ssDNA exonuclease RecJ1 [Methanobrevibacter ruminantium M1] Length = 432 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 24/221 (10%) Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 + + I N + I + D DG ++ ++ + ++ I R+ P ++ Sbjct: 2 LKKHIENEDIIRLISHNDADGLSAAGVIANAIKEEGGQFHITIVPRLK------PDVIRD 55 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLS 204 E +L + D GS ++ DVIV DHHQ E + L + Sbjct: 56 VSKEKYELYVFSDMGSAC---IKQLNRLKSDVIVADHHQPSEHEPKDNLIHVNPHLFGID 112 Query: 205 GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 G HL AG +LV+ + + L + + A + G+N+ Sbjct: 113 GSRHLSGAGSSYLVVRNMNKK-----------HLAYMALIGAFGDMQCANRFTGINQLI- 160 Query: 265 VKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 L + GN L ++ V+ + +++ Y + P++ Sbjct: 161 ---LKDGQEAGNLELHEDLKIVSKAQEPLYKSIAYTLNPAL 198 >gi|294496122|ref|YP_003542615.1| exonuclease RecJ [Methanohalophilus mahii DSM 5219] gi|292667121|gb|ADE36970.1| exonuclease RecJ [Methanohalophilus mahii DSM 5219] Length = 431 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 21/190 (11%) Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI 146 + I ++ + D DG + A+M L + + I R+ + N Sbjct: 4 EKISEYSRVRLISHNDADGITAAAVMCHALLREDIVFHASIVSRLDE----NVVETVNNS 59 Query: 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQ 206 + L++ D GS + ++ D I+IDHH E AY +VNP+ D Sbjct: 60 TDNGDLVLFCDMGSGQPELIEKVK---NDTIIIDHH-APVGETTAYVMVNPHLADIDGAY 115 Query: 207 GHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVK 266 ++CA+ ++V + + L L + D N + + Sbjct: 116 -YMCASTTAYVVATEMN------------PENKELAGLAIAGAIGDKQLFDRENGLILKE 162 Query: 267 GLMVARRQGN 276 G+ Sbjct: 163 GIESGSVSIR 172 >gi|310800624|gb|EFQ35517.1| DHH family protein [Glomerella graminicola M1.001] Length = 459 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 17/183 (9%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDG 134 + A I + + + +I D D DG AS A++ R L ++ Y+P + + Sbjct: 69 MEAARAFIRECVSAGKPTLIVPDKDADGLASGAILERTLVLLGLDPSLITAYLPPKGKNV 128 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 + + + + I +D GS S L ++G IVIDHH + P A Sbjct: 129 HDESCRS--EMASHEPAYIFILDQGSRSSPPLIDGPHRG---IVIDHHHALEGDHPEGA- 182 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 ++ D ++ + +L+ ++ D L + L Sbjct: 183 LHVTACDSPPV---ATSSLLTYLICRDLH-----DGVEGACDWLCVMGTHGDLGNTLKWE 234 Query: 255 PLI 257 P Sbjct: 235 PPF 237 >gi|116754737|ref|YP_843855.1| phosphoesterase domain-containing protein [Methanosaeta thermophila PT] gi|116666188|gb|ABK15215.1| phosphoesterase, RecJ domain protein [Methanosaeta thermophila PT] Length = 469 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 33/258 (12%) Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF 145 + I SE +++ D DG + ++ LS ++ Y P + +E+ Sbjct: 18 AEVISRSEDVLVVSHIDADGLTAAGVICTALSRKGID---YTPLFFK---QLDSRAIERI 71 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 + G+ L+I D GS + GI ++ DHH+ S EI + L G Sbjct: 72 ADAGSDLVIFTDLGSGMIQEISSF---GIRAVIADHHRPGSAEIYRGIVHINPHLLGGDG 128 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP--LIGLNRAY 263 H+ +G F++ + R N DL +L + A+ + D+ L+GLNR Sbjct: 129 ATHISGSGTAFILANAMGR----------NEDLSALAVVGAVGDLQDLSSGRLVGLNRRI 178 Query: 264 VVKG-----------LMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 + G L + +Q P K L + P + + I G R+G Sbjct: 179 IEVGSRAGVLSFGPDLKLFGKQTRPVFKMLEYSTDPYIPGLSGDEEACISFLKEIGIRLG 238 Query: 313 ESNLGSRLLISDDSQELE 330 R + D + Sbjct: 239 GERWR-RWIDLDQDERAR 255 >gi|147919692|ref|YP_686563.1| putative single-stranded DNA-specific exonuclease [uncultured methanogenic archaeon RC-I] gi|110621959|emb|CAJ37237.1| putative single-stranded DNA-specific exonuclease [uncultured methanogenic archaeon RC-I] Length = 461 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 60/355 (16%), Positives = 117/355 (32%), Gaps = 50/355 (14%) Query: 78 CDK---AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 ++ AA R I S+++++ D DG S ++ L + ++ Sbjct: 1 MERFSQAAERCADLIKKSDELLVVSHIDADGLTSAGIICTALQRLGKGYDTRFVKKLDA- 59 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +L + G + +I D GS + D + G+ ++ DHHQ K + P + Sbjct: 60 ----EALKQIAAIAGKRTVIFTDLGSGAIDQI---NELGLTAVIADHHQPKPSDYPYHLN 112 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV- 253 + L+ + +GV FL+ + + N DL SL + A+ + D+ Sbjct: 113 PHLVGLNGA---TDISGSGVTFLLALKL----------GPNEDLSSLAIVGAVGDLQDMR 159 Query: 254 -VPLIGLNRAYVVKG-----------LMVARRQGNPGLKALIERVNISSPI--TAENLGY 299 L+G+NR + G + + RQ P K L + P E Sbjct: 160 TNALVGVNRQILTLGVSGGYLSFEKDIKLFGRQTRPVYKLLQYCSDPYMPGLSGCEEACV 219 Query: 300 MIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL 359 + + L + ++ + L ++ + E Sbjct: 220 TFLENAGIPVKAESWRRWIDLSRDEKTRVISSLFQHCMACGMPSHKIQRLVGEVYTLCKE 279 Query: 360 TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR 414 +++ AS LL A + ++ AI + G+ R Sbjct: 280 EPGTEMRDAS-----------EFSTLLNATARYEYAETGLAICTGDRGEAFHYAR 323 >gi|332158235|ref|YP_004423514.1| putative ss-DNA-specific exonuclease recj related protein [Pyrococcus sp. NA2] gi|331033698|gb|AEC51510.1| putative ss-DNA-specific exonuclease recj related protein [Pyrococcus sp. NA2] Length = 475 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 69/474 (14%), Positives = 140/474 (29%), Gaps = 86/474 (18%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 +A + I I I D DG + A++ + L N ++ I Sbjct: 10 IREAVELVKFHIELGHTIRIVSHRDADGITAAAILAKALLREGANVHVSI------VKQV 63 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + L+++ +E ++II D GS S ++ + V+++DHH + ++ ++ Sbjct: 64 SKELLDELKDEEYKIIIFSDLGSGSLGLIEEY-LKEKSVVILDHHPPEDVKLSEKHILAN 122 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILR--------------QDNKVPLNFDLLSLLD 243 + L +GV + + R Q+N + L +++ Sbjct: 123 PVQFGANSVRDLSGSGVTYFFAKELNERNRDLAYIAIVGAVGDMQENDGIFHGMNLDIIE 182 Query: 244 --------------------------LVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277 ++A AT ++ + G R ++ L Sbjct: 183 DGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEIPEITGDER-RAMEWLRNKGFNPEK 241 Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA--- 333 L E + ++ + IG+ + D E A Sbjct: 242 RYWELSEEEKKRLHDLLVIHMIKHGAEKEDIDKLIGDVVISPLYPEGDPRHEAREFATLL 301 Query: 334 -----------------------MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV 370 K + + + + + + + + V Sbjct: 302 NATGRLNMGNLGVAVCMGDEEAYKKAVKMVEEYKREQIEARKWLIQNWDKEVWEGENVYV 361 Query: 371 IVVEGDRWH-----PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFD 420 + V + + + A + FA + E GS R+ E G+ Sbjct: 362 LYVGRNIRDTLVGIAASMAINAGLANPEKPVIVFADTDENPNLLKGSARTTEKALKKGYH 421 Query: 421 IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 +G+ + A E +GGGHA+AAG+ + R K V Sbjct: 422 LGEALKKASEIVGG-EGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVKGNENQ 474 >gi|15669167|ref|NP_247972.1| hypothetical protein MJ_0977 [Methanocaldococcus jannaschii DSM 2661] gi|2842584|sp|Q58387|RECJ_METJA RecName: Full=Single-stranded-DNA-specific exonuclease recJ gi|1591640|gb|AAB98980.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 469 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 38/272 (13%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + K A+ + + KI+I D DG S A++ + +++A+ Sbjct: 6 ELKKGAKVLQN--NKNNKILIVTHIDTDGLTSRAILQKLAERLNLDADFMFL------KQ 57 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQ------YATNQGIDVIVIDHHQVKSEEIP 190 + + LII D GS ++ +++ +I++DHHQ + +IP Sbjct: 58 ITIETINDIPFKDYDLIIFADLGSGQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIKIP 117 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 ++ N L +C AGV +L I DL L A+ + Sbjct: 118 KTI-IHINPLTIAKSGAEICGAGVSYLFAKAIN---------NDWIDLAKYAVLGAVGDI 167 Query: 251 CDVV-PLIGLNRAYVV-----------KGLMVARRQGNPGLKALIERVNISSPITAENLG 298 ++ LIGLNR + L + RQ P ++ ++ + + + Sbjct: 168 QNIEGKLIGLNRKILCDAIMNGDVKVKTDLQMYGRQTRPLFVSMRYWADVRTDLLNNDS- 226 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 I I + + + + + +++ E + Sbjct: 227 -KIIKYIQSINKKYDIEINPTMRLAEIPFEHK 257 >gi|317012804|gb|ADU83412.1| hypothetical protein HPLT_05100 [Helicobacter pylori Lithuania75] Length = 417 Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 58/412 (14%), Positives = 129/412 (31%), Gaps = 42/412 (10%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R V GYG Sbjct: 17 DFLREA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNVHGYGFTDLA 75 Query: 142 ME----------------------KFINEGAQLIITVDCG---STSYDALQYATNQGIDV 176 + K + L+ + D G + + + + Sbjct: 76 LNDLLSQPCIFNPKTNQLVRLDHIKNQFQKNPLLFSTDLGADLAANTELQEILLEHFEQC 135 Query: 177 IVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY-RILRQDNKVPL 234 I+ DHH + + I + N D+ + A + + + + ++ Sbjct: 136 IITDHHKSFEVDWIDKNKIAYINLNDEKDANYYSGAFTSALVFSQIFQTQTTPLEEELIA 195 Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL-KALIERVNISSPIT 293 L +DL D + ++ + + + + L + + ++ Sbjct: 196 ITLLSDRIDL----DHGDNLDMVLNLAPVKHECIQCFFKDKDFSLAQDDSDEISNLYGFN 251 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 N + A G + L+ + + + +R + Sbjct: 252 CINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPTSDPRLSTFNVKEFKRYNDIKKKMV 311 Query: 354 AEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFEEDGKGIG 411 E++ Q + V +++ G+ GL+A +K+ S I + G Sbjct: 312 KESEENAQIFPCNKILVALLDESCSIKVGVSGLVANNFLKKYPFNHSLCIYRDNKDGYSG 371 Query: 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 S R F ++ L++ GGH A GL+ + +F ++ Q Sbjct: 372 SARGDRNF------LSQIKTIPLIQSGGHEEAFGLSFAKEDFKKVMKSLQSL 417 >gi|289192500|ref|YP_003458441.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp. FS406-22] gi|288938950|gb|ADC69705.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp. FS406-22] Length = 469 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 99/274 (36%), Gaps = 38/274 (13%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 + K A+ + + KI+I D DG S ++ + +++A+ Sbjct: 4 WAELKKGAKVLQN--NKNSKILIVTHIDTDGLTSRVILQKLAERLNLDADFMFL------ 55 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ------YATNQGIDVIVIDHHQVKSEE 188 ++ + LII D GS ++ +++ +I++DHHQ + + Sbjct: 56 KQITIETIDDIPFKDYDLIIFADLGSGQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIK 115 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 IP ++ N L +C AGV +L I DL L A+ Sbjct: 116 IPKTI-IHINPLTIGKSGAEICGAGVSYLFAKAINNE---------WIDLAKYAVLGAVG 165 Query: 249 TVCDVV-PLIGLNRAYVV-----------KGLMVARRQGNPGLKALIERVNISSPITAEN 296 V ++ LIGLNR + L + RQ P ++ ++ + + + Sbjct: 166 DVQNIEGKLIGLNRKILCDAIMSGDIKVKTDLQMYGRQTRPLFVSMRYWADVRTDLLNND 225 Query: 297 LGYMIGPSINAGGRIGESNLGSRLLISDDSQELE 330 I I + + + + + +++ E + Sbjct: 226 S--KIIKYIQSINKKYDIEINPTMRLAEIPFEHK 257 >gi|21226315|ref|NP_632237.1| putative single-stranded-DNA-specific exonuclease [Methanosarcina mazei Go1] gi|20904562|gb|AAM29909.1| putative single-stranded-DNA-specific exonuclease [Methanosarcina mazei Go1] Length = 445 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 24/198 (12%) Query: 75 LTDCDKAARRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 +++ +K A I + + + D DG S +M L + + I ++ Sbjct: 1 MSELEKLINLAKNAADKIRRHKFVRVISHNDADGLTSAGIMAHALLRAGIPFQLSIASKL 60 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 G + + I+ +L+I D GS + + G DV++IDHHQ + PA Sbjct: 61 D---GAVIEEVNRSIS-SGELVIFCDMGSGHPELI---KQVGADVVIIDHHQ-PVGQSPA 112 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VN + + + L+ R L N L L V Sbjct: 113 KAVVNAHMVGIDGATDISASGT-----CYLVARELGTGNI--------DLAGLAIAGAVG 159 Query: 252 DVVPLIGLNRAYVVKGLM 269 D N + + L Sbjct: 160 DRQLFRTANAFILEEALK 177 >gi|21228072|ref|NP_633994.1| single-stranded-DNA-specific exonuclease recJ [Methanosarcina mazei Go1] gi|20906508|gb|AAM31666.1| Single-stranded-DNA-specific exonuclease recJ [Methanosarcina mazei Go1] Length = 466 Score = 54.8 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 31/193 (16%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R + I + + D DG S ++ L + + R V + Sbjct: 12 AGRCAEKIKKHRSVHVVSHIDADGLTSAGIICTALERGNFDYT----TRFVKQ--LDEKA 65 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 + +E +L++ D GS + + ++GI+ ++ DHHQ + +NP+ Sbjct: 66 LNTIADENHELVVFTDLGSGMCE---HIKSRGINAVISDHHQPQGTLE---FHLNPHLFG 119 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI---- 257 L +G +L+ + + L L + + D+ L Sbjct: 120 ANGSY-ELSGSGSTYLLASALGKN-------------RDLSSLAIVGAIGDMQHLKMGQL 165 Query: 258 -GLNRAYVVKGLM 269 G+NR + +G+ Sbjct: 166 VGINRIILEEGVK 178 >gi|308184767|ref|YP_003928900.1| hypothetical protein HPSJM_05050 [Helicobacter pylori SJM180] gi|308060687|gb|ADO02583.1| hypothetical protein HPSJM_05050 [Helicobacter pylori SJM180] Length = 417 Score = 54.8 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 68/417 (16%), Positives = 139/417 (33%), Gaps = 56/417 (13%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176 + +++ ++ +DC + D L ++ + G D Sbjct: 76 INDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGADLVSNIELQKILLEHFEQC 135 Query: 177 IVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 I+ DHH + + I + N D+ + A + + Sbjct: 136 IITDHHKSFEVDWIDKNEIAYINLNDEKDANYYSGAFTSALVFSQI---------FQIQT 186 Query: 236 FDLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPIT 293 L +L+A+ + D + L G N V+ + V + + V Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLNLMPVKHDRIKCFFKDKDLSLVQDDLDGI 244 Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 + G+ INA R+ G + L+ + + + + + +R Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPISDPRLSVFNVKEFKRYN 304 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFE 404 + E++ Q + V +++ G+ GL+A R +K+ S I + Sbjct: 305 DIKKKMVKESEENAQIFPCNRILVALLDESCSIKVGVSGLVADRFLKKYPFNRSLCIYKD 364 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS R F ++ L++ GGH A GL+ + +F ++ Q Sbjct: 365 NKDGYSGSARGGGNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQ 415 >gi|45358110|ref|NP_987667.1| RecJ-like protein [Methanococcus maripaludis S2] gi|44920867|emb|CAF30103.1| RecJ related protein [Methanococcus maripaludis S2] Length = 431 Score = 54.8 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 106/283 (37%), Gaps = 30/283 (10%) Query: 85 IVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 I + I N + I I +D DG + ++M++ L + N M I + + + +E Sbjct: 19 IKEKIENCDGLIRIVTHHDPDGLTAGSIMLKTLLRLNKNVQMTILEHL------SKESVE 72 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNPNRLD 201 + E ++ I D GS + + + + +++DHH +V EI +NP+ Sbjct: 73 ELSKENDKMFIFCDMGSGQINLI---NHLQFNAVILDHHPPEVAETEIGNILQLNPHLFG 129 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 + A+GV +L+ L DL +A V + + L Sbjct: 130 ANGA-KEISASGVCYLIAR-----------------LFEYYDLATVAVVGAIGDMQHLPF 171 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 + K ++ R+ N + + ++ Y P I I + L Sbjct: 172 IGLNKYILNEARKYRYLSVIKDIVYNCYNLPISRSIYYSTQPYIRELDGIDKIKEILEEL 231 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 + ++ +A K ++L +R ++ L ++ + +D Sbjct: 232 SINPEKKGITVAEKENLLEYFKRFNKNDDLIVDRYEINHKLND 274 >gi|254171836|ref|ZP_04878512.1| ssDNA-specific exonuclease [Thermococcus sp. AM4] gi|214033732|gb|EEB74558.1| ssDNA-specific exonuclease [Thermococcus sp. AM4] Length = 476 Score = 54.4 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 90/285 (31%), Gaps = 22/285 (7%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 + A I I I + D DG + A++ + ++ + + I + Sbjct: 12 EGAELIKMHIELGHTIRLISHRDADGITAGAILAKAIAREGGSFQLSI------VKQVSE 65 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 L+++ E ++ + D GS S + + + V++ H + + L+ Sbjct: 66 ELLKELAEERREIYVFSDLGSGSIELIDKYLDFATVVVIDHHPPEREKFSVDSHLLVNPV 125 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 + L +G + V + R R+ L + + V D+ + G Sbjct: 126 PFGANSVRDLSGSGAAYFVAREMNRANRE------------LAYVAIVGAVGDMQEIDGT 173 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSR 319 + + + G ++ + S + L Y P + G G+ Sbjct: 174 FHGMNLDIIEDGKELGILEVRKELRLFGRESRPLRQMLAYATNPEL--PGITGDERKAIE 231 Query: 320 LLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 L + + +RL ++ +L + + D Sbjct: 232 WLRAKGFDPDRHYWQ--LREEEKKRLHDALVLHLIKHGAPKETID 274 >gi|20089707|ref|NP_615782.1| ss-DNA-specific exonuclease [Methanosarcina acetivorans C2A] gi|19914637|gb|AAM04262.1| ss-DNA-specific exonuclease [Methanosarcina acetivorans C2A] Length = 476 Score = 54.4 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 31/193 (16%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R + I + I D DG S ++ L N R V + Sbjct: 22 ADRCAEEIRKHRSVHIVSHIDADGLTSAGIICTALER--GNFEYT--TRFVKQ--LDEKA 75 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 ++ +E + ++ D GS + + +GI +V DHHQ + +NP+ Sbjct: 76 LDTIADENHEFVVFTDLGSGMCEQI---KARGISAVVSDHHQPQGT---LDLHLNPHLFG 129 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI---- 257 L +G +L+ + + L L + V D+ L Sbjct: 130 ANGSY-ELSGSGTTYLLASALGKN-------------RDLSSLAIVGAVGDMQHLKMGQL 175 Query: 258 -GLNRAYVVKGLM 269 G+NR + +G+ Sbjct: 176 VGINRLILEEGVQ 188 >gi|296109839|ref|YP_003616788.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus ME] gi|295434653|gb|ADG13824.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus ME] Length = 454 Score = 54.4 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 35/234 (14%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L + ++A + I++ + +K +I D DG S ++ + +++A+ Sbjct: 2 LREIERARKFILKNLD--KKFLIVTHVDTDGLTSRVILQKLAERLNLDADYLFLT----- 54 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 PS +E+ +II D GS+ L+ + +I++DHHQ ++ ++ Sbjct: 55 -QLTPSTVEEVPFNDYDIIIMADLGSSHLSLLKEVRKK---IIILDHHQPENIKLSNIIH 110 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCD-V 253 VNP+ S LC A V +L+ N DL L A+ V + Sbjct: 111 VNPHLEGRSSL--DLCGASVSYLLARA----------FGNNIDLAKYAILGAVGDVQNIW 158 Query: 254 VPLIGLNRAY-----------VVKGLMVARRQGNPGLKALIERVNISSPITAEN 296 L GLNRA V L + R P +L ++ + + + Sbjct: 159 GRLEGLNRAILSDAILSGDLVVKSDLQLYGRCSRPLYISLRYWSDVRTDLLNND 212 >gi|315425837|dbj|BAJ47490.1| archaea-specific RecJ-like exonuclease [Candidatus Caldiarchaeum subterraneum] Length = 488 Score = 54.4 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 6/168 (3%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + AA RI + E I IF D D +S ++ L + +RI D Sbjct: 13 KQAENAAERIRNWVAQGEFIDIFTHNDADALSSAGIIAAALRREDARFRVRSLNRIDDF- 71 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 + A+ II D GS L V ++DHH+ +P + Sbjct: 72 ----IELFNSGYVEAKCIIFTDMGSGYTSELLPLLG-NRSVAILDHHEPVQASLPPEWVH 126 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 G + A+GV + V + + + + + L L D Sbjct: 127 VNPHQYGFDGAREISASGVSYFVAKAMNPANIEYSPIAVVGALGDLQD 174 >gi|312216999|emb|CBX96948.1| hypothetical protein [Leptosphaeria maculans] Length = 455 Score = 54.4 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 17/183 (9%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN---MYIPDRIVDG 134 ++A I + + ++ D D DG +S A++ L+ + A+ +Y P + + Sbjct: 55 IERAREIIRRCADARKPTVVLPDKDADGLSSGAILFHTLTMLGLPADSITIYFPPKGSNV 114 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 + + E I +D GS + + ++IDHH P A Sbjct: 115 H--DDITKETIATMSPSYIFVLDQGSRKSPPII---DTPHQCLIIDHHFADEGGFPQGAD 169 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 D +A + F + + ++ L+ L +L L + Sbjct: 170 -YVTAHDCPPV---ATSALLTFNICLPLHPDLKDK-----ISWLAALGTHGDLGSTIKWE 220 Query: 255 PLI 257 P Sbjct: 221 PPF 223 >gi|256810800|ref|YP_003128169.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens AG86] gi|256794000|gb|ACV24669.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens AG86] Length = 469 Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 89/262 (33%), Gaps = 25/262 (9%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + K A+ + + KI+I D DG S A++ + +++A+ Sbjct: 2 ESWAELKKGAKVLEK--NKDNKILIATHIDTDGLTSRAILQKLTERLNLDADFMFL---- 55 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ------YATNQGIDVIVIDHHQVKS 186 + + L+I D GS ++ +++ +I++DHHQ + Sbjct: 56 --KQITIETINDIPFKDYDLVIFADLGSGQLKMIKEKLDELNLSDKKDKIIILDHHQPEE 113 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 ++P A+++ N L +C AGV +L I DL L A Sbjct: 114 IKVPE-AVIHINPLTIGKSGAEICGAGVSYLFAKAINNE---------WVDLAKYAVLGA 163 Query: 247 LATVCDVV-PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSI 305 + + ++ L GLNR + +M + L+ + + Sbjct: 164 IGDIQNIEGKLTGLNREILNDAIMNGNIKIKSDLQMYGRQTRPLFVSMRYWVDVRTDLLN 223 Query: 306 NAGGRIGESNLGSRLLISDDSQ 327 N I ++ D + Sbjct: 224 NDSRIIKYIQYINKKYGIDVNP 245 >gi|329766547|ref|ZP_08258090.1| phosphoesterase DHHA1 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136802|gb|EGG41095.1| phosphoesterase DHHA1 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 473 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 +I I + + I + D DG S +++ + L I + ++ Sbjct: 14 DKISDCIKSRKSISVTTHIDCDGLTSGSIITKALIRAGAKCT------IRTSKEFSKKVI 67 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 E + + + D L + G + IV+DHHQ+ +E ++N + Sbjct: 68 ESLKKDSREFHVITDLAGGFSKNLD--ESLGENWIVLDHHQISEDEKENQNVINAWKYGI 125 Query: 203 LSGQGHLCAAGVVFLVLVLI 222 G +CA G+ +L + + Sbjct: 126 DGG-TEICAGGMAYLAAMAL 144 >gi|315425813|dbj|BAJ47467.1| archaea-specific RecJ-like exonuclease [Candidatus Caldiarchaeum subterraneum] gi|315427695|dbj|BAJ49291.1| archaea-specific RecJ-like exonuclease [Candidatus Caldiarchaeum subterraneum] Length = 488 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 6/168 (3%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + AA RI + E I IF D D +S ++ L + +RI D Sbjct: 13 KQAENAAERIRNWVAQGEFIDIFTHNDADALSSAGIIAAALRREDARFRVRSLNRIDDF- 71 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 + A+ II D GS L V + DHH+ +P + Sbjct: 72 ----IELFNSGYVEAKCIIFTDMGSGYTSELLPLLG-NRSVAIFDHHEPVQASLPPEWVH 126 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 G + A+GV + V + + + + + L L D Sbjct: 127 VNPHQYGFDGAREISASGVSYFVAKAMNPANIEYSPIAVVGALGDLQD 174 >gi|308063816|gb|ADO05703.1| hypothetical protein HPSAT_04885 [Helicobacter pylori Sat464] Length = 417 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 72/434 (16%), Positives = 148/434 (34%), Gaps = 60/434 (13%) Query: 69 MPDPLILTDCDKAARRI----VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123 MP +L K +RI ++ + I+ + D D DG + +++M + + Sbjct: 1 MPKKELLK-MSK--KRIFKDFLKEVKQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDF 57 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID 175 + P R GYG + +++ ++ +DC + D L ++ + G D Sbjct: 58 FFFSPLRNAHGYGFTDLAINDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGAD 117 Query: 176 -----------------VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLV 218 I+ DHH+ + + L+D + A LV Sbjct: 118 LAADTQLQEILLERFERCIITDHHKSFEVGLIDGNKIAYINLNDEKDANYYSGAFTSALV 177 Query: 219 LVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPG 278 I++ L + +L+A+ + D + L + +V L A+ + Sbjct: 178 FSQIFQ--------TQTTPLEN--ELIAITLLSDRIDLDHGDNLGMVLDLAQAKHERIQC 227 Query: 279 LKALIERV--NISSPITAENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQEL 329 + + G+ INA R+ G + L+ + Sbjct: 228 FFKDKDLSLAQDDLDGISNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPI 287 Query: 330 EMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAA 388 + + + + +R + E++ Q + V +++ GI GL+A Sbjct: 288 NDPRLSVFNVKEFKRYNDIKKKMVKESEENAQIFSCNKILVALLDESCSVKLGISGLVAN 347 Query: 389 RLKEKFGRP-SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLT 447 +K+ S I + GS R F ++ L++ GH A GL+ Sbjct: 348 NFLKKYSSNRSLCIYKDNKDGYGGSARGDRNF------LSQIKTIPLIQARGHKEAFGLS 401 Query: 448 VERVNFGRLCDFFQ 461 + +F ++ + Q Sbjct: 402 FAKKDFKKVVESLQ 415 >gi|254779588|ref|YP_003057694.1| hypothetical protein HELPY_1002 [Helicobacter pylori B38] gi|254001500|emb|CAX29516.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 442 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 65/439 (14%), Positives = 125/439 (28%), Gaps = 64/439 (14%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPN--- 138 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 139 -------------------PSLMEKFINEGAQLIITVDCG---STSYDALQYATNQGIDV 176 K + L+ + D G ++ + + Sbjct: 76 INDLLSQPCIFNPKTNQLVRLNCIKNQFQKDPLLFSADLGADLVSNIELQKILLEHFEQC 135 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 I+ DHH+ ++ + L+D + A LV I++ Sbjct: 136 IITDHHKSFEVDLIDGNKIAYINLNDEKDANYYSGAFTSALVFSQIFQ--------TQTT 187 Query: 237 DLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITA 294 L +L+++ + D + L G N V+ + + Sbjct: 188 PLEE--ELISITLLSDRIDLDNGDNLDMVLNLAQAKHDRIECFFKDKDFSLAQDDLDGIS 245 Query: 295 ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML-------------AMKLDVLNQ 341 G+ INA R+ + S + + N Sbjct: 246 NLYGFNCINYINALSRLSGAREFKGCYNSYLHYLVLKHFNPISDPRLSIFNVKEFTRYND 305 Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF-GRPSFA 400 ++ M E A+ + + G+ GL+A +K+ S Sbjct: 306 IKKKMVKESEENAQIFPCNKILVALLDESCSI-----KVGVSGLVANNFLKKYPFNHSLC 360 Query: 401 ISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460 I + GS R F ++ L++ GGH A GL+ + +F ++ Sbjct: 361 IYRDNKDGYSGSARGGGNF------LSQIKTIPLIQSGGHEEAFGLSFAKEDFKKVIKSL 414 Query: 461 QKFAHNIVPALITTPVFKI 479 Q N A Sbjct: 415 QAIRSNNAKAEFKKEDLTC 433 >gi|307260943|ref|ZP_07542626.1| hypothetical protein appser12_5110 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869355|gb|EFN01149.1| hypothetical protein appser12_5110 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 46 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 542 QAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 AI F + + K + L +N ++G+K QLR+ + Sbjct: 1 DAIWFNADLRIFPDLSI----KSARLIYKLDINEFKGNKNLQLRIENI 44 >gi|298674036|ref|YP_003725786.1| phosphoesterase RecJ domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287024|gb|ADI72990.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum Z-7303] Length = 711 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 19/158 (12%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF-LSHC----SVNANMYIPDR 130 K A+ I +A+ S+ I+I D DG S + R L +A Y+ R Sbjct: 322 PGMKKVAKEIRKAVIKSKPIVIRHHADADGMTSAVALERAVLPLISEVSGSDAEYYLYRR 381 Query: 131 ---IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDA--LQYATNQGIDVI 177 Y + + + LI+ VD GST D ++ A GID+I Sbjct: 382 SPSKAPFYELADVTKDLSFALEDMERHGQKFPLILLVDNGSTDEDTPAMRQARVYGIDMI 441 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 V+DHH E + Y + N G Sbjct: 442 VVDHHN-PDEVVDQYLQSHINPAHAGGDFGITTGMLCT 478 >gi|308062307|gb|ADO04195.1| hypothetical protein HPCU_05220 [Helicobacter pylori Cuz20] Length = 417 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 68/416 (16%), Positives = 139/416 (33%), Gaps = 54/416 (12%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176 + +++ +I +DC + D L ++ + G D Sbjct: 76 INDLLSQPCIFNPKTNQLIRLDCIKNQFQKDPLLFSADLGADLAADTQLQEILLERFEQC 135 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 I+ DHH+ + + L+D + A LV I++ Sbjct: 136 IITDHHKSFEVGLIDGNKIAYINLNDEKDANYYSGAFTSALVFSQIFQ--------TQTT 187 Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITA 294 L + +L+A+ + D + L + +V L A+ + + + Sbjct: 188 PLEN--ELIAITLLSDRIDLDHGDNLDMVLDLAQAKHERIQCFFKDKDLSLAQDDLDGIS 245 Query: 295 ENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347 G+ INA R+ G + L+ + + + + + +R Sbjct: 246 NLYGFNCINYINALSRLSGAREFKGCYDSYLYYLVLKHFNPINDPRLSVFNVKEFKRYNG 305 Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKFGRP-SFAISFEE 405 E++ Q + V +++ GI GL+A +K+ S I + Sbjct: 306 IKKKMVKESEENAQIFSCNKILVALLDESCSVKLGISGLVANNFLKKYSSNRSLCIYKDN 365 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS R F ++ L++ GH A GL+ + +F ++ + Q Sbjct: 366 KDGYGGSARGDRNF------LSQIKTIPLIQARGHEEAFGLSFAKEDFKKVVESLQ 415 >gi|325959845|ref|YP_004291311.1| phosphoesterase DHHA1 [Methanobacterium sp. AL-21] gi|325331277|gb|ADZ10339.1| phosphoesterase DHHA1 [Methanobacterium sp. AL-21] Length = 465 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 26/241 (10%) Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANM 125 L +P+ L+ +KA I ++ E I I+ D DG + A++ L + Sbjct: 2 LKSNPMNLS-FEKAHDLIKKS----EDIKIYTHIDCDGVTAGAVLSSMLDKLGKDHEVEF 56 Query: 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV- 184 D++ D + +L I D GS + +++DHH Sbjct: 57 ISLDQMDD------------LVTENELTIFSDLGSGQ--EMDKLCTSNSKTLILDHHPPI 102 Query: 185 ---KSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241 + +NP+ + L Y L + D+ + Sbjct: 103 RKLDNYLNGQLIELNPHHHNIDGSYEVSGGGMTYLLARTFGYTDLSWMGVLSAVGDMQNS 162 Query: 242 LDLVALATVCDV-VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 + + I N L + RQ P AL +++ PIT Sbjct: 163 FSGKLIGLNSSILQESIQQNLISSQNDLAIYGRQTRPLYIALSYFGDVNLPITNNKTECQ 222 Query: 301 I 301 + Sbjct: 223 M 223 >gi|73669259|ref|YP_305274.1| single-stranded-DNA-specific exonuclease RecJ [Methanosarcina barkeri str. Fusaro] gi|72396421|gb|AAZ70694.1| single-stranded-DNA-specific exonuclease RecJ [Methanosarcina barkeri str. Fusaro] Length = 466 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 25/199 (12%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 + +K A + + I + + + D DG S ++ L N R V Sbjct: 3 ETMKILNKEAEKCAEEIKKYKSVHVVSHIDADGLTSAGIICTALER--GNFEYT--TRFV 58 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 + ++ +E ++I D GS + ++ GI ++ DHHQ + Sbjct: 59 KQ--LDEKALDTIADENHNIVIFTDLGSGMCEQIESH---GIHAVISDHHQPQGSYQ--- 110 Query: 193 ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC- 251 +NP+ L +G +L+ + + N DL SL + A+ + Sbjct: 111 FHLNPHLFGANGSY-ELSGSGSTYLLASALGK----------NQDLSSLAIVGAVGDMQH 159 Query: 252 -DVVPLIGLNRAYVVKGLM 269 + L+G+NR + +G+ Sbjct: 160 LKMGQLVGINREILEEGVK 178 >gi|91773470|ref|YP_566162.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM 6242] gi|91712485|gb|ABE52412.1| Single stranded DNA specific Exonuclease recJ [Methanococcoides burtonii DSM 6242] Length = 461 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 31/184 (16%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I + + D DG S ++ + L + +++ + +E N Sbjct: 19 IKAQVSVYVVSHIDADGLTSAGIICKALEREGIEHSIHF------VKQLDEVEIESIANL 72 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 +L+I D GS D+L + GI+ ++ DHHQ + E Sbjct: 73 NPELVIFTDLGSGMIDSL---NSHGINAVIADHHQPRGELDYHLNPHLYGFNGSY----E 125 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI-----GLNRAY 263 L +G+ +++ + L DL + V D+ L GLNR Sbjct: 126 LSGSGMTYILANALGDN-------------KDLADLAIVGAVGDLQHLKKGHLTGLNRYI 172 Query: 264 VVKG 267 + +G Sbjct: 173 LEEG 176 >gi|308183136|ref|YP_003927263.1| hypothetical protein HPPC_04985 [Helicobacter pylori PeCan4] gi|308065321|gb|ADO07213.1| hypothetical protein HPPC_04985 [Helicobacter pylori PeCan4] Length = 417 Score = 52.1 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 66/416 (15%), Positives = 136/416 (32%), Gaps = 54/416 (12%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176 + +++ ++ +DC + D L ++ + G D Sbjct: 76 INDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGADLAANTQLQEILLERFEQC 135 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 I+ DHH+ + + L+D + A LV I++ Sbjct: 136 IITDHHKSFEVGLIDGNKIAYINLNDEKDANYYSGAFTSALVFSQIFQ--------TQTT 187 Query: 237 DLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPITA 294 L + +L+A+ + D + L + +V L A+ + + + Sbjct: 188 PLEN--ELIAITLLSDRIDLDHGDNLDMVLDLAQAKHERITCFFKDKDLSLAQDDLDGIS 245 Query: 295 ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL-------DVLNQNRRLME 347 G+ INA R+ + S + + + +R + Sbjct: 246 NLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPTSDPRLSVFNVKEFKRYND 305 Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFEE 405 E++ Q + V +++ G+ GL+A +K+ S I + Sbjct: 306 IKKKMVKESEENAQIFSCNKILVALLDESCSIKVGVSGLVANNFLKKYPSNRSLCIYRDN 365 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS R F ++ L++ GGH A GL+ + +F ++ Q Sbjct: 366 KDGYSGSARGDRDF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQ 415 >gi|257387120|ref|YP_003176893.1| phosphoesterase RecJ domain protein [Halomicrobium mukohataei DSM 12286] gi|257169427|gb|ACV47186.1| phosphoesterase RecJ domain protein [Halomicrobium mukohataei DSM 12286] Length = 492 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 20/195 (10%) Query: 75 LTDCDKA-ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L D A A+R+ +A +++++ D DG S A+ L IP +V Sbjct: 7 LDDVATACAQRLCRA----DRVLLASHIDADGLTSAAVASLALERAG------IPFEVVF 56 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVK--SEEIP 190 + + + ++ D GS D + G + ++ DHHQ + P Sbjct: 57 KKQLDETEIASIAAREYDTVLFTDFGSGQLDVISEHERAGDFEPVIADHHQPAVVDGQRP 116 Query: 191 AYALVNPNRLDDLSGQG------HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDL 244 + + + + + + ++ R L + + L L Sbjct: 117 SASGTDSHPAETEFHLNPLLVGLDGASELSGAGASYVLARALAEVGETEPPDGNRDLAGL 176 Query: 245 VALATVCDVVPLIGL 259 + V D+ + G Sbjct: 177 AVVGAVGDMQAVDGE 191 >gi|13541834|ref|NP_111522.1| single-stranded DNA-specific exonuclease [Thermoplasma volcanium GSS1] gi|14325270|dbj|BAB60174.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 493 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%) Query: 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 + FL R L + AAR I + + EK++I D DG +S A+ L Sbjct: 5 EYFLEKKHRDLY-------EMAVAAREI---LRDQEKVVIVSHNDADGLSSSAIAKVTLD 54 Query: 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 ++ + + + + + VD GS S + GI+ + Sbjct: 55 RAGISNEVIFVKNLD---------RDVLKSLPSGFKWFVDLGSGSM---HMIRDSGIECL 102 Query: 178 VIDHHQVKSEEIPAY 192 + DHH ++ Sbjct: 103 ITDHHVPDQFDVDED 117 >gi|55379663|ref|YP_137513.1| RecJ-like exonuclease [Haloarcula marismortui ATCC 43049] gi|55232388|gb|AAV47807.1| RecJ-like exonuclease [Haloarcula marismortui ATCC 43049] Length = 506 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 20/184 (10%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 +AA R++ A D DG S A+ LS + + Sbjct: 22 RAADRVLLA----------SHIDADGLTSAAIATAALSRAGIPVETVF------KKQLDA 65 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHH--QVKSEEIPAYALVN 196 + +E ++ D GS D + G + I+ DHH + P + Sbjct: 66 AEIESIAAHEYDTVLFTDFGSGQLDVISEHVAAGDFEAIIADHHQPSDPDDCHPDAVVAT 125 Query: 197 PNRLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP 255 D + L + + D L L + V D+ Sbjct: 126 DGYADFETHLNPLLEGINGASELSGAGAAYVLARALSTGETDNRDLAALAVVGAVGDMQA 185 Query: 256 LIGL 259 + G Sbjct: 186 VGGE 189 >gi|317180174|dbj|BAJ57960.1| hypothetical protein HPF32_0378 [Helicobacter pylori F32] Length = 417 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 66/416 (15%), Positives = 135/416 (32%), Gaps = 54/416 (12%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSVCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL------IITVDCGSTSY--DALQYATNQGID-----------------V 176 + +++ ++ +DC + D L ++ + G D Sbjct: 76 INDLLSKPCIFNPKTNQLVRLDCIKNQFQKDPLLFSADLGADLAADTQLQEILLERFEQC 135 Query: 177 IVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 I+ DHH+ + + L+D + A LV I++ Sbjct: 136 IITDHHKSFEVGLIDENKIAYINLNDEKDANYYSGAFTSALVFGQIFQ--------TQTT 187 Query: 237 DLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPITA 294 L + +L+A+ + D + L G N V+ + + + Sbjct: 188 PLEN--ELIAITLLSDCIDLDHGDNLDMVLNLAQAKHERIQCFFQDKDLSLAQDDLDGIS 245 Query: 295 ENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL-------DVLNQNRRLME 347 G+ INA R+ + S + + + + +R + Sbjct: 246 NLYGFNCINYINALSRLSGAREFKDCYDSYLHYLVLKHFNPINDPHLSVFNVKEFKRYND 305 Query: 348 SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKFGRP-SFAISFEE 405 E++ Q + V +++ GI GL+A +K+ S I + Sbjct: 306 IKKKMVKESEENAQIFSCNKILVALLDESCSVKLGISGLVANNFLKKYSSNRSLCIYRDN 365 Query: 406 DGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS R F ++ L++ GH A GL+ + +F ++ + Q Sbjct: 366 KDGYSGSARGDRNF------LSQIKTIPLIQARGHEKAFGLSFAKEDFKKVVESLQ 415 >gi|48477317|ref|YP_023023.1| single-stranded-DNA-specific exonuclease RecJ [Picrophilus torridus DSM 9790] gi|48429965|gb|AAT42830.1| single-stranded-DNA-specific exonuclease RecJ [Picrophilus torridus DSM 9790] Length = 444 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 15/182 (8%) Query: 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM-YIPDRIVDGYGPNPSLMEKF 145 + I ++ + + YD DG +S ++ L + ++ Y+ G+ + + Sbjct: 19 EKIRENDYVRVLAHYDGDGVSSAIILTNALKREGIKFHLSYVSSLDEKGF------RQLY 72 Query: 146 INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 E I VD GS + + +++DHH + + P +N N D Sbjct: 73 EEEKDVFTIMVDAGSDQAQFISDYN----NYVILDHHFHRDFKAPG---ININARDFGYN 125 Query: 206 -QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYV 264 C A + FL+ + + + ++ + D+ + + Sbjct: 126 GTTEACGATMAFLMALTMNEDNKDLLPFFVSGVMADKQDIGGFKGLNASIYNEYNKNKTF 185 Query: 265 VK 266 Sbjct: 186 HM 187 >gi|282164992|ref|YP_003357377.1| hypothetical protein MCP_2322 [Methanocella paludicola SANAE] gi|282157306|dbj|BAI62394.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 703 Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VALMMRFLSHCSV----NANMYIPDR 130 +K A+ I +AI S+ I++ D DG + VA+ L +A + R Sbjct: 318 PQMEKVAKHIRRAILKSQPIIVRHHADADGICAGVAVEKACLPLIKAQGDSDAEYHFFSR 377 Query: 131 ---IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSY--DALQYATNQGIDVI 177 Y + + + LII +D GST DA +YA GID++ Sbjct: 378 SPSKAPFYELEDINKDLTMALEDHERFGQAMPLIILMDNGSTEEDLDAYKYAKVYGIDLL 437 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 V+DHH E + Y + + N S G Sbjct: 438 VVDHH-HPDEIVDQYLIAHVNPYHAGSDFGITAGM 471 >gi|307354144|ref|YP_003895195.1| phosphoesterase RecJ domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157377|gb|ADN36757.1| phosphoesterase RecJ domain protein [Methanoplanus petrolearius DSM 11571] Length = 405 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 35/198 (17%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 + +A + + + S+ + +FG +D DG A+ +++ L ++ I G Sbjct: 3 IETSAGLVAEKLEKSDYVRVFGHHDADGIAAASIICHALYRQGKKFHLSI------KSGI 56 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 P + ++ + D GS+ D D +VIDHH +NP Sbjct: 57 KPEDIR-----SHEITVLCDLGSSMED-------LPEDTVVIDHHIP---CFNGEYHINP 101 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 L A+ V ++V + L L L + D + Sbjct: 102 RLFGIDGEL-DLAASAVAYMVADHMGDN-------------RDLCSLALLGMIGDHQEIA 147 Query: 258 GLNRAYVVKGLMVARRQG 275 G N V +G+ Sbjct: 148 GKNAGIVNEGIANQFITP 165 >gi|148241467|ref|YP_001226624.1| exonuclease VII large subunit [Synechococcus sp. RCC307] gi|147849777|emb|CAK27271.1| Exonuclease VII large subunit [Synechococcus sp. RCC307] Length = 384 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + S +N A+ +LE G P F ++ V+ HL + D ++QA Sbjct: 7 SVSELNEAIGVLLER------GF-APRFLVDGAVVK--PVLKKGHLWFSLSDGD-ASIQA 56 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ L + G + V G L N+W ++ LD P Sbjct: 57 VAWASTVARLS--FRPNDGDGVRVVGKL--NFWGARASLSVQALDIRPS 101 >gi|330894547|gb|EGH27208.1| single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. mori str. 301020] Length = 95 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 38 AIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 +P ++ R+ R V+ + L+ S+ L+P L D A +V A+ Sbjct: 46 DLPPLLTRLYAARGVACE---AELDKSLARLIPY-QQLKGIDAAVDLLVTALRE 95 >gi|260891373|ref|ZP_05902636.1| putative single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] gi|260858756|gb|EEX73256.1| putative single-stranded-DNA-specific exonuclease RecJ [Leptotrichia hofstadii F0254] Length = 473 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 6/87 (6%) Query: 509 PVFAFPNHKLQSIRVVN--LAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMH 566 P F N ++I+ + H+ + + A+ F F + Sbjct: 2 PTFRTNNVLFENIKFIGENKNHIMFDIKQKGFFNKNAVWFNSGEY----FKELNENLFYD 57 Query: 567 VTGHLCVNYWRGSKRCQLRVLDASPVE 593 + L ++ ++ V D + Sbjct: 58 IVYKLKTEMFQDRYYTKVYVEDVKVSQ 84 >gi|257052014|ref|YP_003129847.1| phosphoesterase RecJ domain protein [Halorhabdus utahensis DSM 12940] gi|256690777|gb|ACV11114.1| phosphoesterase RecJ domain protein [Halorhabdus utahensis DSM 12940] Length = 469 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 30/198 (15%) Query: 79 DKAAR---RIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D+AA R+ A +++++ D DG S + L + +++ D Sbjct: 9 DRAAECAQRLRSA----DEVLLASHIDADGLTSAGIATTALERAGIPTTTVFKNQLDD-- 62 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYAL 194 + Q ++ D GS DA+ QG + IV+DHHQ E + Sbjct: 63 ----EEIASIAARDFQTVLFTDFGSGQLDAITKHEQQGDFEPIVVDHHQPADAETRYHLN 118 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 +D S A+ + + R L +D + L L + V D+ Sbjct: 119 PLLEGIDGASELSGAGASYL-------LARALEEDEQDN-----RDLAALAVVGAVGDMQ 166 Query: 255 PLIGL----NRAYVVKGL 268 + G NRA V G+ Sbjct: 167 AVGGELVGANRAIVEDGM 184 >gi|124486165|ref|YP_001030781.1| hypothetical protein Mlab_1347 [Methanocorpusculum labreanum Z] gi|124363706|gb|ABN07514.1| phosphoesterase, DHHA1 [Methanocorpusculum labreanum Z] Length = 465 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 12/138 (8%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 D +AA I +A + D DG S A++ + +S + N ++ Sbjct: 6 DVSRAAEMIREANAA----TLISHIDADGITSEAIISQAVSRLGIPVNPVFVRQLE---- 57 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYALV 195 + K+I L I D G + L+ A V+++DHH + Y V Sbjct: 58 ---PMTMKYIPNDDTLKIFTDLGGGQQNLLEEAGIPTDKVLILDHHISQPAPGGTEYFQV 114 Query: 196 NPNRLDDLSGQGHLCAAG 213 N + + Sbjct: 115 NSQFYGEEYTKCSAAGIT 132 >gi|257076661|ref|ZP_05571022.1| single-stranded-DNA-specific exonuclease RecJ [Ferroplasma acidarmanus fer1] Length = 443 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 18/184 (9%) Query: 83 RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM-YIPDRIVDGYGPN 138 + QA + + + + YD DG +S ++++ L + ++ YI + +G+ Sbjct: 12 NILHQAGEKLKEEKYVRVLAHYDGDGVSSSIILLKALERLDIKYHLSYIKNLDNEGF--- 68 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 + E L I VD GS+ A+ + I++DHH E + +N N Sbjct: 69 ---RSLYEEEADSLNIIVDAGSSQIPAIADH----SNFIILDHHFYNKTET---SCININ 118 Query: 199 RLD-DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 D ++G C A + ++ + + R ++ + D+ L+ + + Sbjct: 119 ARDFGINGTRDACGATMAYIFALALDENNRDLFPFFMSGVMADKQDIGGLSGLNKDLYSE 178 Query: 258 GLNR 261 + Sbjct: 179 YNSY 182 >gi|210135190|ref|YP_002301629.1| hypothetical protein HPP12_0997 [Helicobacter pylori P12] gi|210133158|gb|ACJ08149.1| hypothetical protein HPP12_0997 [Helicobacter pylori P12] Length = 417 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 61/417 (14%), Positives = 125/417 (29%), Gaps = 56/417 (13%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D D + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDSMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 ----------------------MEKFINEGAQLIITVDCG---STSYDALQYATNQGIDV 176 K + L+ + D G ++ + + Sbjct: 76 INDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLVSNIELQKILLEHFKQC 135 Query: 177 IVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 I+ DHH + + I + N D+ + A Sbjct: 136 IITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALAF---------NQIFQTQT 186 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNR--AYVVKGLMVARRQGNPGLKALIERVNISSPIT 293 L +L+A+ + D + L + + R + S Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLNLAQPKHDRIKCFFKDKDLSLAQDDSDGI 244 Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 + G+ INA R+ G + L+ + + + + + +R Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINDPRLSVFNVKEFKRYN 304 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKFGRP-SFAISFE 404 + E++ Q + V +++ G+ GL+A +K+ S I + Sbjct: 305 DIKKKMVKESEENAQIFPCNKILVALLDESCSIKVGVSGLVANNFLKKYSFNRSLCIYRD 364 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 GS R F ++ L++ GGH A GL+ + +F ++ Q Sbjct: 365 NKDGYSGSARGDRNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVMKSLQ 415 >gi|20095028|ref|NP_614875.1| single-stranded-DNA-specific exonuclease [Methanopyrus kandleri AV19] gi|19888295|gb|AAM02805.1| Single-stranded-DNA-specific exonuclease [Methanopyrus kandleri AV19] Length = 442 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 119/362 (32%), Gaps = 37/362 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 ++A + + ++ D DG + ALM L +P R+ Sbjct: 18 LEEAVEFLED--LEGTAVRLYVHNDADGLTAGALMAFTLRCL------EVPTRLR----V 65 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 + E + + VD GS D L+ V+VIDHH++ S+ LVNP Sbjct: 66 LNTETELLKEDLDGPTVVVDMGSGILDKLR----NDHPVLVIDHHEISSKPSDNVLLVNP 121 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + G A+ V +L+ + ++ ++ +P + + D A + Sbjct: 122 REHG-VDGGTEASASTVAYLLCRRVVKV--EETCLPKAALVGAYGDNQA-----GKRGVR 173 Query: 258 GLNRAYVVKGLMVARRQGN-PGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNL 316 GLNR G + P I G + ++ A R G+ ++ Sbjct: 174 GLNRVPEEDGEKHEIIEIRDPAYWVFGRASMTVGEIVERVSGASVREALEA--RFGDLDV 231 Query: 317 GSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGD 376 L + + +++ ++R L+ ++ E+K ++ + + Sbjct: 232 APVDLSRE---------DEAEIVREHRELLSGEKRKELESKTGRIHVFDEERPLKALRDP 282 Query: 377 RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVK 436 ++ R E + A+ + + RS I + +S + Sbjct: 283 LETATLL-NACGRYGEGWAGVLIAMGSWDPLQLAKKLRSKHKAIIREALSRLSRGEGITD 341 Query: 437 GG 438 Sbjct: 342 RE 343 >gi|298674182|ref|YP_003725932.1| phosphoesterase RecJ domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287170|gb|ADI73136.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum Z-7303] Length = 450 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 27/194 (13%) Query: 83 RRIVQAIYNSEKIM------IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 I A SE I+ + D DG S A++ + L + + I R+ + Sbjct: 10 ELISTAKQVSETILKYSNVRVVSHNDTDGITSAAIICQALLREKIRYHATIVSRLDESVI 69 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + L+I D GS D + + D +VIDHH + E L Sbjct: 70 EDVNNT----ISEGDLVIFCDMGSGQPDLISNVSE---DTVVIDHHNPEGESTAKAVLNP 122 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 D S + ++ R + N L L + D Sbjct: 123 HFSEIDGSTYLSASGST------YMVAREMDSSNV--------DLSGLAVTGAIGDKQVF 168 Query: 257 IGLNRAYVVKGLMV 270 N + + + Sbjct: 169 ESANEFILDESVKN 182 >gi|15612368|ref|NP_224021.1| hypothetical protein jhp1303 [Helicobacter pylori J99] gi|4155912|gb|AAD06881.1| putative [Helicobacter pylori J99] Length = 410 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 61/414 (14%), Positives = 132/414 (31%), Gaps = 46/414 (11%) Query: 69 MPDPLILTDCDKAARRI----VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123 MP +L K +RI ++ + I+ + D D DG + +++M + + Sbjct: 1 MPKKELLK-MSK--KRIFKDFLEEVKRHRPIIFYTDNDCDGMLAGSVLMSMCYRLGIKDF 57 Query: 124 NMYIPDRIVDGYGPNPSLME----------------------KFINEGAQLIITVDCG-- 159 + P R GYG + K + L+ + D G Sbjct: 58 FFFSPLRNAHGYGFTDLALNDLLSQLCIFNPKTNQLVRLDYIKNQFQKTPLLFSADLGAD 117 Query: 160 -STSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 ++ + + + I+ DHH + + I + N D+ + A + Sbjct: 118 LVSNIELQKILLERFEQCIITDHHKSFEVDWIDKNKIAYINLNDEKDANYYSGAFTSALV 177 Query: 218 VLVLIY-RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGN 276 + + + ++ L +DL + V+ L + + + Sbjct: 178 FSQIFQIQTTPLEEELIAITLLSDRIDLDNGDNLDMVLNLAQPKHDRIEC---FFKDKDL 234 Query: 277 PGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336 + ++ ++ N + A G N L+ + + + Sbjct: 235 SLAQDDLDEISNLYGFNCINYINALSRLSGAREFKGCYNSYLHYLVLKHFNPISDPRLSV 294 Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF- 394 + + +R + E++ Q + V +++ G+ GL+A +K+ Sbjct: 295 FNVKEFKRYNDIKKKMVKESEENAQIFSCNKILVAILDESCSIKVGVSGLVANNFLKKYP 354 Query: 395 GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV 448 S I + GS R F ++ L++ GGH A GL+ Sbjct: 355 FNHSLCIYKDSKDGYSGSARGDGTF------LSQIKTIPLIQAGGHEEAFGLSF 402 >gi|147921763|ref|YP_684415.1| putative single-stranded DNA-specific exonuclease (RecJ-like) [uncultured methanogenic archaeon RC-I] gi|110619811|emb|CAJ35089.1| putative single-stranded DNA-specific exonuclease (RecJ-like) [uncultured methanogenic archaeon RC-I] Length = 430 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 29/180 (16%) Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 I + +D DG + ++ L V+ I N + I + A +I Sbjct: 22 IRVVSHHDADGITACGIICHALLRRKVHFQATIVS--------NLDPSIEAILDPAVPVI 73 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 D GS D + D I++DHH E + +D S +GV Sbjct: 74 FCDMGSGQPDIV-----NKYDAIILDHHVPVGEHKNIQVNPHLIGIDGGSEL---SGSGV 125 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + + RI+ + + L L + D + G N+ + + + Sbjct: 126 AY----ALARIMGDN---------VDLAGLAISGAIGDKQKMAGPNKDILDEAIKNGVIT 172 >gi|327399951|ref|YP_004340790.1| phosphoesterase RecJ domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315459|gb|AEA46075.1| phosphoesterase RecJ domain protein [Archaeoglobus veneficus SNP6] Length = 510 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 26/225 (11%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + A + + E++++ D DG S ++ ++ L + I+ Sbjct: 54 KEMLRKAYEVALMLKKQEEVLVVTHVDADGITSGSIALQALERAGIE------GNILFVK 107 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 +PS +E+ + T D GS D + + I+ ++ DHH V Sbjct: 108 QLDPSTIEQVADRNVFTWFT-DLGSGQLDLIA---EKKIECVITDHH-VPQGHYRLQLNP 162 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV-- 253 N +D G +V + LN+DL+SL + A+ + D Sbjct: 163 NDFGVDGAHELGGAPTTYLV-------------AKSMGLNYDLVSLAIVGAVGDLQDSRH 209 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 LIGLNR + +G+ L+ ++ + Sbjct: 210 GKLIGLNRLVLQEGVEGNFISAFRDLRLFGKQTRPVYKMLEYTFD 254 >gi|313124932|ref|YP_004035196.1| single-stranded DNA-specific exonuclease [Halogeometricum borinquense DSM 11551] gi|312291297|gb|ADQ65757.1| single-stranded DNA-specific exonuclease [Halogeometricum borinquense DSM 11551] Length = 478 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 23/178 (12%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R+ A +++++ D DG S A+ L + ++ Sbjct: 24 AARLRDA----DRVLLASHIDADGLTSAAIASSALERAGIPFETVFSKQLDK------EE 73 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200 + + ++ D GS D + G ++ DHHQ + + + Sbjct: 74 VASIAATEYETVLFTDFGSGQLDIIADHEAAGDFTPVIADHHQPADADTEFHLNPLRFGI 133 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIG 258 D S A+ V + R L ++ L L + V D+ G Sbjct: 134 DGASELSGAGASYV-------LARALEDEDGAN-----RDLAALAVVGAVGDMQNSQG 179 >gi|330945905|ref|XP_003306649.1| hypothetical protein PTT_19838 [Pyrenophora teres f. teres 0-1] gi|311315750|gb|EFQ85244.1| hypothetical protein PTT_19838 [Pyrenophora teres f. teres 0-1] Length = 1032 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 10/118 (8%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDG 134 D+A + I + + +I D D DG +S A++ L ++ ++Y P G Sbjct: 634 IDRARQIIKECAEAKKPTVILPDKDADGLSSGAILQHTLISLGLSPDLISVYFP---PKG 690 Query: 135 YGPNPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + + ++ + A I V D GS L + +VIDHH + P Sbjct: 691 FNVHDESTKEALTARAPFYIFVLDQGSRRSPPLIDSA---HTCLVIDHHFAEEGGFPK 745 >gi|317499046|ref|ZP_07957327.1| cellular tumor antigen p53 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893696|gb|EFV15897.1| cellular tumor antigen p53 [Lachnospiraceae bacterium 5_1_63FAA] Length = 76 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 519 QSIRVVNLAH--LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 + + V +++ +S + + F + K + T + +N + Sbjct: 2 ERVNVFGKNKNVIKLALKSSQGTRIDGMIFEDEDEFREKM---GTAKYITCTYYPVINEY 58 Query: 577 RGSKRCQLRVL 587 +G K Q+ + Sbjct: 59 QGYKSLQINIQ 69 >gi|298675074|ref|YP_003726824.1| phosphoesterase RecJ domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288062|gb|ADI74028.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum Z-7303] Length = 324 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 5/102 (4%) Query: 102 DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 D DG S A++ +L + Y+P + Y ++K + II D Sbjct: 6 DTDGICSAAILFEYL---GKEFDTYVPH--IGNYFFTVDEIDKISKKNYDFIIIADMAIP 60 Query: 162 SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 + + G+ + + DHH + + NP + + Sbjct: 61 EDNIVDLKNKSGVQIYIFDHHLQDNIQRNGIHHSNPVSIGEP 102 >gi|261402256|ref|YP_003246480.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius M7] gi|261369249|gb|ACX71998.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius M7] Length = 436 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 63/459 (13%), Positives = 148/459 (32%), Gaps = 83/459 (18%) Query: 73 LILTDCDKAARRIVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 L + ++ + I + I N + I + +D DG +S ++++ L + ++ + + Sbjct: 4 EKLKEMEEVVKAIKEKILNHNGYIRVITHHDTDGLSSGGILVKMLLRTNKLFHLTV---V 60 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEI 189 + K L I D GS + + + I++DHH K + Sbjct: 61 EHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIM---KNNFNAIILDHHPPKIKESFL 117 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 +NP+ + A+GV +LV F L L + Sbjct: 118 GDIIQLNPHIFGIDGA-KEITASGVCYLV--------------AREFGYYDLSVLAIVGI 162 Query: 250 VCDVV--PLIGLNRAYVVKGLMVARRQ------GNPGLKALIERVNISSPITAENLGYMI 301 + D+ PL+GLN+ V + + N + + + + +L Sbjct: 163 IGDMQYSPLLGLNKFIVNEAREYRFVKIVNDIVYNIYDVEMYKAIAYCTKPYIPDLASES 222 Query: 302 ----------------------GPSINAGGRIGESNL----GSRLLISDDSQELEMLAMK 335 + + + +R +I ++ +++ Sbjct: 223 KAFKFLKEIGIDPNKKYLDESERKKLLSSILFRYPKIDNLTVNRFIIEHKVKDAFLMSEM 282 Query: 336 LDVL---------------NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP 380 L+ + ++ + +L + + ++ + ++ S+ + Sbjct: 283 LNAVGRNGLFAVGIGICLEDEECINIGKNILWKYKKNLINELKSVKLESLKNILYFEGKK 342 Query: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGR-----SIEGFDIGKMVSFAVEEGILV 435 G++G++A+ L ++ + E S R G ++ ++ A E G Sbjct: 343 GMIGIIASILADEKPVIGY---HIEGDIAKFSARGNRDLVNRGLNLSVAMAVAEEFGG-- 397 Query: 436 KGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITT 474 GGGH +A+G V + + + + Sbjct: 398 TGGGHNVASGAVVPKDKIMDFLKRVDEIIGEQLNSKKNQ 436 >gi|208434902|ref|YP_002266568.1| hypothetical protein HPG27_948 [Helicobacter pylori G27] gi|208432831|gb|ACI27702.1| hypothetical protein HPG27_948 [Helicobacter pylori G27] Length = 417 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 62/419 (14%), Positives = 123/419 (29%), Gaps = 56/419 (13%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R V GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNVHGYGFTDLA 75 Query: 142 ME----------------------KFINEGAQLIITVDCGSTSYDALQYATNQ----GID 175 + K + L+ + D G+ Q Sbjct: 76 INDLLSKPCIFNPKTNQLVRLDYIKNQFQKNPLLFSADLGADLAADTQLQEILLERFEQC 135 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 +I H + I + N D+ + A + + Sbjct: 136 IITDHHKSFEVGLIDENKIAYINLNDEKDANYYSGAFTSALVFSQI---------FQTQT 186 Query: 236 FDLLSLLDLVALATVCDVVPL-IGLNRAYVVKGLMVARRQ-GNPGLKALIERVNISSPIT 293 L +L+A+ + D + L G N V+ + + Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLNLAPAKHERIQCFFKDKDLSLAQDDLDGI 244 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMK-------LDVLNQNRRLM 346 + G+ INA R+ + S + + + + +R Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPLNDPRLSVFNVKEFKRYN 304 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDR-WHPGIVGLLAARLKEKF-GRPSFAISFE 404 + E++ Q + V +++ G+ GL+A +K+ S I + Sbjct: 305 DIKKKMVKESEENAQIFSCNKILVALLDESCSIKVGVSGLVANNFLKKYPSNRSLCIYRD 364 Query: 405 EDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKF 463 GS R F ++ L++ GGH A GL+ + +F ++ Q Sbjct: 365 NKDGYSGSARGGGNF------LSQIKTIPLIQAGGHEEAFGLSFAKEDFKKVIKSLQTL 417 >gi|167946786|ref|ZP_02533860.1| hypothetical protein Epers_09643 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 43 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%) Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDAS 590 IAF M ++ + L VN +RG + QL V Sbjct: 1 IAFNQPE-------MGELASQVRLAYRLDVNEFRGRVQPQLVVEYIQ 40 >gi|150403481|ref|YP_001330775.1| phosphoesterase domain-containing protein [Methanococcus maripaludis C7] gi|150034511|gb|ABR66624.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C7] Length = 431 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 35/198 (17%) Query: 85 IVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 I + I N + I + +D DG S A++++ L + NA+M I + + + +E Sbjct: 19 IKEKIENCDGLIRVVTHHDPDGLTSGAIVLKTLIRLNKNAHMTILEHL------SKESIE 72 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVNPNRLD 201 + E ++ I D GS D + G + +++DHH ++ EI +NP+ Sbjct: 73 ELAKENDKMFIFCDMGSGQIDLMD---KLGFNAVILDHHPPEIAETEIGNILQLNPHIFG 129 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV-----PL 256 + A+GV +L+ L DL +A V + P Sbjct: 130 ANGA-KEISASGVCYLIAR-----------------LFEYYDLAPIAIVGAIGDMQHLPF 171 Query: 257 IGLNRAYVVKGLMVARRQ 274 IGLN+ + + Sbjct: 172 IGLNKYILNEARKYRYLS 189 >gi|73669607|ref|YP_305622.1| hypothetical protein Mbar_A2111 [Methanosarcina barkeri str. Fusaro] gi|72396769|gb|AAZ71042.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 452 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 27/198 (13%) Query: 78 CDKAARRIVQAIYNSEKIM------IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 + + I A +EKI + D DG S +M + L + + I ++ Sbjct: 1 MSELEKLIDLAKNAAEKIRKYRFVRVVSHNDADGLTSAGIMAQALLRAGICFQLSIAGKL 60 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + N + +L+I D GS + + DVIV+DHHQ + PA Sbjct: 61 DEAVIENVNKS----ISRNELVIFCDMGSGQPELIDKVA---ADVIVLDHHQ-PVGQSPA 112 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 A+VN + + + L+ R L N L L + Sbjct: 113 KAVVNAHLVGIEGATDISASGT-----CYLVARELAAGNV--------DLAGLALAGAIG 159 Query: 252 DVVPLIGLNRAYVVKGLM 269 D N + + L Sbjct: 160 DKQLFHTANAFILEEALK 177 >gi|294496570|ref|YP_003543063.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM 5219] gi|292667569|gb|ADE37418.1| phosphoesterase RecJ domain protein [Methanohalophilus mahii DSM 5219] Length = 710 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 29/190 (15%) Query: 43 VARVLVNRNVSIDYAKDFLNPS--IRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGD 100 + R+L R + + +FL S + L P + + AR I +AI S I++ Sbjct: 295 IDRILDQR--AEPHDIEFLVKSKLLEDLRP------EMKEVARIIKKAILRSRPILLRHH 346 Query: 101 YDVDGAAS-VALMMRFLSHC----SVNANMYIPDR---IVDGYGPNPSLME--------K 144 D DG + VA+ L + Y R Y + + Sbjct: 347 ADADGMTAGVAIEKAILPLIREVNGQDGEYYFYKRSPSKAPFYEIMDVTKDISFALEDAE 406 Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQ--GIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 ++ L++ VD GST D GID++V+DHH + + Y L + N Sbjct: 407 RHDQKLPLVVMVDNGSTEEDVPAMRQALIYGIDMVVVDHH-HPDKVVDDYLLAHVNPAHV 465 Query: 203 LSGQGHLCAA 212 G Sbjct: 466 GGDFGQTAGM 475 >gi|33866713|ref|NP_898272.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. WH 8102] gi|81835051|sp|Q7U490|EX7L_SYNPX RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit gi|33633491|emb|CAE08696.1| possible exodeoxyribonuclease VII large subunit [Synechococcus sp. WH 8102] Length = 387 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + + +N A+ ++LE G P F + + + HL +T + ++ A Sbjct: 10 SVAELNTAIGNLLER------GF-APRFLVE-ATVSRPQ-LKKGHLWLTLTDGE-ASISA 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ L G + V G L N+W ++VLD P Sbjct: 60 VAWASQLRQLRYRPEDGDG--VTVVGKL--NFWAARASLNVQVLDIRPS 104 >gi|15646020|ref|NP_208201.1| hypothetical protein HP1410 [Helicobacter pylori 26695] gi|2314586|gb|AAD08455.1| predicted coding region HP1410 [Helicobacter pylori 26695] Length = 394 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 111/375 (29%), Gaps = 50/375 (13%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL------IITVDC--------------------GSTSYDALQYATNQGID 175 + +++ ++ +DC + + + Sbjct: 76 LNDLLSQPCIFNPKTNQLVRLDCIKNQFQKNPLLFSADLGADLAANTELQEILLEHFEQC 135 Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 +I H + + I + N D+ + A + + Sbjct: 136 IITDHHKSFEVDWIDENKIAYINLNDEKDANYYSGAFTSALVFSQI---------FQTQT 186 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERV--NISSPIT 293 L +L+A+ + D + L + +V L A+ + + Sbjct: 187 TPLEE--ELIAITLLSDRIDLDHGDNLDMVLSLAQAKHERIKCFFKDKDLSLAQDDLDEI 244 Query: 294 AENLGYMIGPSINAGGRI-------GESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLM 346 + G+ INA R+ G + L+ + + + + + + Sbjct: 245 SNLYGFNCINYINALSRLSGAREFKGCYDSYLHYLVLKHFNPINXPRLSVFNVKEFKXYN 304 Query: 347 ESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHP-GIVGLLAARLKEKF-GRPSFAISFE 404 + E++ Q + V +++ G+ GL+A +K+ S I + Sbjct: 305 DXKKKMVKESEENAQIFPCNKILVALLDESCSTKVGVSGLVANNFLKKYPSNRSLCIYRD 364 Query: 405 EDGKGIGSGRSIEGF 419 GS R F Sbjct: 365 NKDGYSGSARGGGNF 379 >gi|219685861|ref|ZP_03540668.1| single-stranded-DNA-specific exonuclease [Borrelia garinii Far04] gi|219672591|gb|EED29623.1| single-stranded-DNA-specific exonuclease [Borrelia garinii Far04] Length = 49 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 46 VLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN 91 +L+ R + D FL S L+ +P +L D DK RI +AI Sbjct: 1 MLIKREIKEDDFIFFLEDS-TNLLHNPFLLKDIDKFINRINKAIKE 45 >gi|159904736|ref|YP_001548398.1| phosphoesterase domain-containing protein [Methanococcus maripaludis C6] gi|159886229|gb|ABX01166.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C6] Length = 431 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 30/283 (10%) Query: 85 IVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 I + I N I I +D DG S +++++ L + NA M I + + + +E Sbjct: 19 IKEKIENYDGLIRIVTHHDPDGLTSGSIVLKTLIRLNKNAQMTILEHL------SKESIE 72 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK--SEEIPAYALVNPNRLD 201 + E ++ I D GS + + N G + I++DHH K EI +NP+ Sbjct: 73 ELAKENDKMFIFCDMGSGQIE---FINNFGFNAIILDHHPPKVAETEIGDILQLNPHIFG 129 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNR 261 + A+GV +L+ L DL +A V + + L Sbjct: 130 ANGA-KEISASGVCYLIAR-----------------LFGYYDLAPVAIVGAIGDMQHLPF 171 Query: 262 AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 + K ++ R+ N + ++++ Y P I I + L Sbjct: 172 IGLNKYILNEARKYRYLSVIKDIVYNCYNLPISKSIYYSTQPYIRELSSIDKIKEIFDEL 231 Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 + ++ ++L ++ ++ L ++ + +D Sbjct: 232 KINPEKKGITAKESENLLECFKKFNKNDELMVDRYEINHKIND 274 >gi|167948074|ref|ZP_02535148.1| single-stranded-DNA-specific exonuclease RecJ [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 98 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 113 MRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171 + L +P+R GYG +P ++E + LIITVD G S + A Sbjct: 13 LLALQAFGCEKVGYLVPNRFEFGYGLSPEIVELAARQQPDLIITVDNGIASISGVSRAAE 72 Query: 172 QGIDVIVI 179 GI V Sbjct: 73 LGIPVTGY 80 >gi|309799912|ref|ZP_07694116.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] gi|308116439|gb|EFO53911.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] Length = 243 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 +AF S+ K++ + L VN W G QL ++DA VEG F + Sbjct: 2 VAFGQGKW----ATEFSQTKQLELAVTLSVNQWNGQTTLQLMMVDAR-VEGVQLFNIR 54 >gi|304314376|ref|YP_003849523.1| single-stranded-DNA-specific exonuclease [Methanothermobacter marburgensis str. Marburg] gi|302587835|gb|ADL58210.1| single-stranded-DNA-specific exonuclease [Methanothermobacter marburgensis str. Marburg] Length = 464 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 15/109 (13%) Query: 77 DCDK---AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 + D+ A RR + I +E + ++ D DG + ++ + L + I Sbjct: 2 NMDELEGALRRARKLIDEAETVTVYSHTDCDGITAATILSKLLDGLGKEHEINI------ 55 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 N + + + G L + D GS V+++DHH Sbjct: 56 ---ININEVPEV-EHGPDLTVFSDLGSGQMVHENMKR--NSRVLILDHH 98 >gi|325957863|ref|YP_004289329.1| phosphoesterase RecJ domain-containing protein [Methanobacterium sp. AL-21] gi|325329295|gb|ADZ08357.1| phosphoesterase RecJ domain protein [Methanobacterium sp. AL-21] Length = 453 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 11/146 (7%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIV 132 +L ++A + + + + I D DG ++ +M ++ ++ I R+ Sbjct: 8 SLLNKAEEACELLGRHLDQDHVVRIISHNDADGISAAGVMCNAVAKQQGKFHVTIIPRLK 67 Query: 133 DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 D + KF+ E +L I D GS + L+ DVI+ DHHQ + Sbjct: 68 D------ENIAKFLKEKYKLFIFCDMGSGN---LRGIKRLKGDVIIADHHQTIDSKEELS 118 Query: 193 ALVNP--NRLDDLSGQGHLCAAGVVF 216 + L +L G + +GV + Sbjct: 119 NSIVHVNPHLYELDGTKDVSGSGVSY 144 >gi|261402773|ref|YP_003246997.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius M7] gi|261369766|gb|ACX72515.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius M7] Length = 469 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 54/348 (15%), Positives = 116/348 (33%), Gaps = 39/348 (11%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG 136 + K + I + K++I D DG S A++ + ++A+ Sbjct: 6 ELKKGVNALKSKI--NGKVLIATHIDTDGLTSRAILQKLSERLELDADFMFL------KQ 57 Query: 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYA------TNQGIDVIVIDHHQVKSEEIP 190 +E+ L I D GS ++ ++ VI++DHHQ +S ++P Sbjct: 58 ITQRSIEEIPFNEYDLTIFADLGSGQLRMIKNKLEELKLADKDSKVIILDHHQPESIKLP 117 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 ++ N L G +C AGV +L + R DL L A+ V Sbjct: 118 RSI-IHINPLTIGKSGGEICGAGVSYLFAREVNRE---------WTDLAKYAVLGAVGDV 167 Query: 251 CDVV-PLIGLNR-----------AYVVKGLMVARRQGNPGLKALIERVNISSPITAENLG 298 ++ LIGLNR + L + RQ P ++ ++ + + + Sbjct: 168 QNIEGKLIGLNRLILEDARLRGDILIKSDLQMYGRQTRPLFVSMRYWADVRTDLLNNDS- 226 Query: 299 YMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKV 358 I + + + + L +++ E + + ++L + + + + Sbjct: 227 -RIIKYLQNISKKYDIEIDPSLRLAEIPFEHKRIIG-SELLIKCLNYVPNHWTSYIPKVI 284 Query: 359 LTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 + + + D +R + + + + Sbjct: 285 FGEVYEFKGEDFGSPLRDLEEFSTCINACSRYGDYETALNVLMGDRDK 332 >gi|147919533|ref|YP_686727.1| phosphoesterase (RecJ-like) [uncultured methanogenic archaeon RC-I] gi|110622123|emb|CAJ37401.1| predicted phosphoesterase (RecJ-like) [uncultured methanogenic archaeon RC-I] Length = 702 Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 19/148 (12%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VALMMRFL---SHCS-VNANMYIPDR 130 +K A RI +AI SE I+I D DG + VA+ L +A + R Sbjct: 317 PQMEKVALRIRKAILKSEPIIIRHHADADGICAGVAIERACLPLIRAQGDADAEHHFFSR 376 Query: 131 ---IVDGYGPNPSLME--------KFINEGAQLIITVDCGST--SYDALQYATNQGIDVI 177 Y + + + LI+ +D GST DA +Y ID++ Sbjct: 377 SPSKAPFYELEDVNKDLVMALEDNQRFGQRMPLIVLMDNGSTEEDIDAYRYTKVYDIDLL 436 Query: 178 VIDHHQVKSEEIPAYA-LVNPNRLDDLS 204 V+DHH + P VNP Sbjct: 437 VVDHHHPDTIVDPYLKGHVNPYHAGGDF 464 >gi|15678192|ref|NP_275307.1| single-stranded DNA exonuclease RecJ related protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2621206|gb|AAB84670.1| single-stranded DNA exonuclease RecJ related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 450 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 41/345 (11%), Positives = 102/345 (29%), Gaps = 38/345 (11%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + +SE + ++ D DG + ++ + L ++ + I N + + + Sbjct: 2 VESSETVTVYSHTDCDGITAATVLSKVLERLDMDHEVRI---------ININEVPEV-EL 51 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 + L I D GS + V+++DHH + + ++ + Sbjct: 52 SSDLTIFSDLGSGQRVHENLKS--NSRVLILDHHPPVRKMNFTAPSGDFLEINPIFYGMD 109 Query: 209 LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL 268 + L+ R + + LL V + + GLNR + + Sbjct: 110 GSTHVSGGGLTYLLAREFGYRD-----LSWMGLLAAVGDMQNITLGKMEGLNRDILQDSV 164 Query: 269 MVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 + + G P +NA G+ L + ++ Sbjct: 165 SEGQIEC---------------QSDLTIYGRHTRPLVNALSYFGDVTLPTTNNTNECIAR 209 Query: 329 LEMLAMKLDVLNQNRRLME------SAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 L+ L + L R+L + + + ++++ + + + + Sbjct: 210 LKNLGIPLKNGESQRKLCDLTDDEKRKLFNEIYRMMVSEVPERYHRYLPRLILGEVYELS 269 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 ++ + + + + + I G GK Sbjct: 270 SEERYTVFRDLSEFSTAVNACNRNSRWKLAMEIIGGDRKGKRDEL 314 >gi|288931846|ref|YP_003435906.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM 10642] gi|288894094|gb|ADC65631.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM 10642] Length = 407 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 55/432 (12%), Positives = 124/432 (28%), Gaps = 50/432 (11%) Query: 77 DCDKAARRIVQAIYNSEK-IMIFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDG 134 D KA + + + + + + I D DG S ++ L + I Sbjct: 8 DFLKAVKFTAEKLKDVTREVYIVHHNDADGICSALILTIALMRKGRDVKRYCI------- 60 Query: 135 YGPNPSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 +P ++E+ + +II D G + D + + +IDHH E Sbjct: 61 EKVHPKIIERIHEGKEDDVIIYTDLGGLALDTIAKIDGGRNYIFLIDHHPAVKVESEKVV 120 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 ++ L +SG + A+ + ++V I + + + + D D Sbjct: 121 ELDSELLG-ISGDLFISASSLTYMVARGIDEKNKDLAYLAVIGSVGDYHDRYGGVLGIDR 179 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 + L R + + + + + L A ++ G Sbjct: 180 LSLEEAIR-LGQAKIKIEKMRERYYIVPLKN--------YASDVAKAFTNLGVVGYLEKG 230 Query: 314 SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVV 373 N+ +S + + + + + L E E E + + Sbjct: 231 YNIAIECTLSGNVDDAIEKSQEYEKLK------ERKFKEMIERLKNGELKKERYVQWFHA 284 Query: 374 EGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGI 433 + D + G+ + +F + + +SF +D K + + Sbjct: 285 KDDFYPMGVKAI------GEFCQVTKDMSFFDDDKYVI-----------GFQNVYDYIPD 327 Query: 434 LVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI--- 490 L + +A+ ++ + ++P D +A + Sbjct: 328 LGEIKLNAVKVSGRTPIPLERKILNGVMPGFDCLIPEASKAVNGFPDATHKVAAATLIEK 387 Query: 491 ----ALIDMLES 498 I E Sbjct: 388 GKEEEFIRAFER 399 >gi|87125239|ref|ZP_01081085.1| Exonuclease VII, large subunit [Synechococcus sp. RS9917] gi|86167008|gb|EAQ68269.1| Exonuclease VII, large subunit [Synechococcus sp. RS9917] Length = 385 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 +N ++ +LE G P F + + + V HL MT D ++ A Sbjct: 10 TVQELNSSIGSLLER------GF-APRFLV-DATVSRPQ-VKKGHLWMTLTDGD-ASISA 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ L G + V G L N+W ++VLD P Sbjct: 60 VAWASKLRQLAYVPGDGEG--VRVVGKL--NFWATRASLAVQVLDIRPS 104 >gi|261350484|ref|ZP_05975901.1| single-stranded DNA exonuclease RecJ related protein [Methanobrevibacter smithii DSM 2374] gi|288861266|gb|EFC93564.1| single-stranded DNA exonuclease RecJ related protein [Methanobrevibacter smithii DSM 2374] Length = 473 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 99/310 (31%), Gaps = 44/310 (14%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I +S I I+ D DG S A++ I DR+ Y +++ + Sbjct: 19 IESSNDIKIYTHTDCDGICSGAILS------------IILDRLNKDYEIEFVNLDEIEDL 66 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEIPAYALVNPNRLDDLS-- 204 +T+ S + G ++++DHH A Sbjct: 67 DLDHKLTIFSDLGSGQGVDKNAKDGQKILILDHHPPLRDINYKNDKAYTYLEINPMFYGI 126 Query: 205 -GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 G ++C G+ + + F L + L+ + D+ N+ Sbjct: 127 DGSYYVCGGGLCYFL--------------AKTFGFKDLSWIGVLSAIGDMQ----NNKTG 168 Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 +GL Q + + L++ I G P A + L + + Sbjct: 169 HFEGL-NEIIQKDAINEGLLKVTKNDLNI----YGRSTRPLYVALSYFSDVKLPT----T 219 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 ++ QE +++ +L V ++ R S + E+ + ++ + V IV Sbjct: 220 NNQQEAKVVLEELGVDEKHNRKTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIV 279 Query: 384 GLLAARLKEK 393 G L E+ Sbjct: 280 GDAYTFLNEE 289 >gi|326422540|gb|EGD71936.1| Phosphoesterase RecJ domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 352 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 12/139 (8%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 K+ + I + IF +D DG S ALM L Y N Sbjct: 7 KKSIENVRDYISKNNDFTIFYHFDTDGIVSAALMTEVLKKFKKGVYYY--------RATN 58 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 EK E I V C + + ++ ++ +IDHHQ+ + A NP Sbjct: 59 YEDYEKMNIEEYSYNIIV-CDMQVRENVLPLFSK-RNLCIIDHHQI--INVDNIAYANPK 114 Query: 199 RLDDLSGQGHLCAAGVVFL 217 D + +F Sbjct: 115 LWGDNTYTPCSFLVYKIFE 133 >gi|189195300|ref|XP_001933988.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979867|gb|EDU46493.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 450 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 19/184 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDG 134 D+A + I + + +I D D DG +S A++ L ++ ++Y P G Sbjct: 52 IDRARQIIGECAEAQKPTVILPDKDADGLSSGAILQHTLISLGLSPDLISVYFP---PKG 108 Query: 135 YGPNPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + + ++ + A I V D GS L + +VIDHH + P Sbjct: 109 FNVHDKSTKEALTARAPSYIFVLDQGSRRSPPLIDSA---HTCLVIDHHFAEEGGFPEG- 164 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 D +A + + + + ++ L L +L L T Sbjct: 165 SAYVTAHDCPPV---ATSALLTYNICLPLHPDLSDK-----ISWLAALGTHGDLGTTIKW 216 Query: 254 VPLI 257 P Sbjct: 217 EPPF 220 >gi|222444943|ref|ZP_03607458.1| hypothetical protein METSMIALI_00559 [Methanobrevibacter smithii DSM 2375] gi|222434508|gb|EEE41673.1| hypothetical protein METSMIALI_00559 [Methanobrevibacter smithii DSM 2375] Length = 473 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 95/310 (30%), Gaps = 44/310 (14%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I +S I I+ D DG S A++ I DR+ Y +++ + Sbjct: 19 IESSNDIKIYTHTDCDGICSGAILS------------IILDRLNKDYEIEFVNLDEIEDL 66 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEIPAYALVNPNRLDDLS-- 204 +T+ S + G ++++DHH A Sbjct: 67 DLDHKLTIFSDLGSGQGVDKNAKDGQKILILDHHPPLRDINYKNDKAYTYLEINPMFYGI 126 Query: 205 -GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 G ++C G+ + + F L + L+ + D+ + Sbjct: 127 DGSYYVCGGGLCYFL--------------AKTFGFKDLSWIGVLSAIGDMQNNKTGHFEG 172 Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 + + + L++ I G P A + L + + Sbjct: 173 LNEIIQEDAINE-----GLLKVTKNDLNI----YGRSTRPLYVALSYFSDVKLPT----T 219 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 ++ QE +++ +L V ++ R S + E+ + ++ + V IV Sbjct: 220 NNQQEAKVVLEELGVDEKHNRKTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIV 279 Query: 384 GLLAARLKEK 393 G L E+ Sbjct: 280 GDAYTFLNEE 289 >gi|150400438|ref|YP_001324205.1| phosphoesterase domain-containing protein [Methanococcus vannielii SB] gi|150013141|gb|ABR55593.1| phosphoesterase RecJ domain protein [Methanococcus vannielii SB] Length = 432 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 34/225 (15%) Query: 85 IVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 I I E I I +D DG + ++++ L + M I +++ +L + Sbjct: 19 IKDKIEKKEGLIRIITHHDTDGLTAGFIILKTLYRLNKTFQMTILEQLTK-----ENLEK 73 Query: 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP--AYALVNPNRLD 201 + L I D GS D ++ N G D I++DHH + E +N + + Sbjct: 74 LSLENKDNLYIFCDMGSGQSDIIE---NLGFDAIILDHHPPTNFEAKFGKILQLNAHIIG 130 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV--PLIGL 259 G + A+G+ +LV F L + + + D+ P +GL Sbjct: 131 SN-GSKEISASGICYLV--------------ARTFGYYDLAPIAIIGAIGDMQHKPFLGL 175 Query: 260 NRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPS 304 N+ + + + N L + + V + Y Sbjct: 176 NKYILNEA------RKNRYLSVIKDSVYNCYNLPISKAIYYSTQP 214 >gi|134046092|ref|YP_001097578.1| phosphoesterase domain-containing protein [Methanococcus maripaludis C5] gi|132663717|gb|ABO35363.1| phosphoesterase, RecJ domain protein [Methanococcus maripaludis C5] Length = 431 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 25/270 (9%) Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 I I +D DG S +++++ L + NA M I + + + +E E ++ I Sbjct: 30 IRIVTHHDPDGLTSGSIVLKTLIRLNKNAQMTILEHL------SKESIEDLAKENDKMFI 83 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 D GS + + N G + I++DHH K E ++ N Sbjct: 84 FCDMGSGQIELI---NNLGFNAIILDHHPPKVAETEIGNILQLNPH-------------- 126 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + + + L L DL +A V + + L + K ++ R+ Sbjct: 127 --IFGANGAKEISASGVCYLIARLFGYYDLAPIAIVGAIGDMQHLPFIGLNKYILNEARK 184 Query: 275 GNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAM 334 N + ++++ Y P I I + L + ++ Sbjct: 185 NRYLSVIKDIVYNCYNLPISKSICYSTQPYIRELSSIDKIKEIFDELKINPEKKGITAKE 244 Query: 335 KLDVLNQNRRLMESAMLEQAEAKVLTQCDD 364 ++L + ++ L ++ + +D Sbjct: 245 AENLLEYFEKFNKNDELMVDRYEINHKIND 274 >gi|20092244|ref|NP_618319.1| hypothetical protein MA3432 [Methanosarcina acetivorans C2A] gi|19917479|gb|AAM06799.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 445 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 24/198 (12%) Query: 75 LTDCDKAARRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 +++ +K A I + I D DG S +M L + + I ++ Sbjct: 1 MSELEKLINLAKNAADKIRKHRFVRIVSHNDADGLTSAGIMALTLLRAGIGFQLSIAGKL 60 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + + ++I D GS + DV+V+DHH + PA Sbjct: 61 DETVIEEVNRT----VSKGDMVIFCDMGSGQPELTAKVA---ADVVVLDHH-KPVGQSPA 112 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +VN + + + L+ R L N L L V Sbjct: 113 KVMVNAHLVGIDGATDISASGT-----CYLVARELGTGNI--------DLAGLAIAGAVG 159 Query: 252 DVVPLIGLNRAYVVKGLM 269 D N + + L Sbjct: 160 DRQLFRTANAFILDEALK 177 >gi|224541036|ref|ZP_03681575.1| hypothetical protein CATMIT_00187 [Catenibacterium mitsuokai DSM 15897] gi|224526033|gb|EEF95138.1| hypothetical protein CATMIT_00187 [Catenibacterium mitsuokai DSM 15897] Length = 417 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Query: 483 LNASAVNIALIDM-LESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQDSE 539 L S ++ I+ L+ P+G G + + K+ S V ++++F + Sbjct: 311 LEISDLSKTNIEEYLQVLSPFGIGQEKTLVSIEGLKIHSA-PVKDYYDRIKLSFFIPNVG 369 Query: 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576 + I TP + +G+ + + G L +N + Sbjct: 370 GIDTI----IYTPGYKIDKFKQGQTVKIVGTLSINDF 402 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 24 QEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAAR 83 + ++ I + + I+A+ + +R + + + P + L + + Sbjct: 14 EVELSHTKEIMDSYEVNPIIAKYVEHRGFTKEDYEALNTP----FYYNFTDLENGETVVN 69 Query: 84 RIVQAIYNSEKIMIF 98 I +A + KI I Sbjct: 70 LIKEACASKSKIHIC 84 >gi|300709482|ref|YP_003735296.1| phosphoesterase DHHA1 [Halalkalicoccus jeotgali B3] gi|299123165|gb|ADJ13504.1| phosphoesterase DHHA1 [Halalkalicoccus jeotgali B3] Length = 469 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 24/179 (13%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R+ +A E +++ D DG S + L ++ + Sbjct: 16 ANRLREA----EAVLLASHIDADGLTSAGIAASALERAGISFEA------TFAKQLDSEE 65 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200 +E+ + ++ D GS D + N+G ++ DHHQ + L Sbjct: 66 LERIAASDFETVLFTDFGSGQLDLIAAHENRGAFTPVICDHHQPADAGTDFHC---NPLL 122 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 + L+G L AG +L+ + +D L L + V D+ G Sbjct: 123 EGLNGATELSGAGTAYLLARAL-----EDGTDN-----RDLAALAVVGAVGDMQSSEGE 171 >gi|16081637|ref|NP_394002.1| hypothetical protein Ta0527 [Thermoplasma acidophilum DSM 1728] gi|10639695|emb|CAC11667.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 491 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 15/116 (12%) Query: 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG 134 L K A RI I KI+I D DG +S A+ L + + Sbjct: 17 LFGIAKDASRI---IAEQRKIIIVSHIDADGLSSSAIAKTSLDRAGIENEVVF------- 66 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 VD GS S + I+ ++ DHH +I Sbjct: 67 --IKNLDPMVLKGLPPGFKWFVDLGSGSM---NMIRDANIECLITDHHLPDQFDID 117 >gi|149005721|ref|ZP_01829460.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP18-BS74] gi|147762661|gb|EDK69621.1| single-stranded-DNA-specific exonuclease RecJ [Streptococcus pneumoniae SP18-BS74] Length = 226 Score = 47.1 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG-HHFAKK 600 +AF S+ K + + L VN W G QL ++DA VEG F + Sbjct: 2 VAFGQGRW----ATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR-VEGVQLFNIR 54 >gi|307353101|ref|YP_003894152.1| phosphoesterase RecJ domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156334|gb|ADN35714.1| phosphoesterase RecJ domain protein [Methanoplanus petrolearius DSM 11571] Length = 459 Score = 47.1 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 16/147 (10%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D A I + +K+ I D DG S A+M + ++ + R V Sbjct: 5 KDISAVAGIIHDS----KKVTIISHIDADGITSEAIMRQAVARAGIEV------RSVFVR 54 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 P M K + + L + +D G+ + L+ +V++IDHH + + Sbjct: 55 QLEPITM-KHVPDDDSLKLFIDLGAGQQNLLEERGLSDREVVIIDHHVTQDVDTQYI--- 110 Query: 196 NPNRLDDLSGQGHLCAAGVVFLVLVLI 222 G L AAGV +LV I Sbjct: 111 --QANGLPYGHEKLSAAGVGYLVAREI 135 >gi|289581675|ref|YP_003480141.1| phosphoesterase RecJ domain protein [Natrialba magadii ATCC 43099] gi|289531228|gb|ADD05579.1| phosphoesterase RecJ domain protein [Natrialba magadii ATCC 43099] Length = 515 Score = 46.7 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 17/188 (9%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 D+A Q + +E++++ D DG S A+ + L + + Sbjct: 10 DRALEC-AQTLCEAERVLLASHIDADGLTSAAIASQALERAGIPFETVF------EKQLD 62 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNP 197 + +E ++ D GS D + G ++ DHHQ +NP Sbjct: 63 AAAIEAIAATEYDTVLFTDFGSGQLDEISVHEAAGAFTPVIADHHQPAD--AETDYHLNP 120 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQ------DNKVPLNFDLLSLLDLVALATVC 251 L AG +++ + + + ++ D L L + V Sbjct: 121 LLFGINGA-SELSGAGASYVLARALAEVSDETIIPDGGSETAARADNRDLAALAIVGAVG 179 Query: 252 DVVPLIGL 259 D+ G Sbjct: 180 DMQDSDGE 187 >gi|292654251|ref|YP_003534148.1| RecJ-like exonuclease [Haloferax volcanii DS2] gi|291371588|gb|ADE03815.1| RecJ-like exonuclease [Haloferax volcanii DS2] Length = 476 Score = 46.7 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 20/192 (10%) Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 P P + A R+ A +++++ D DG S + L + Sbjct: 4 PVPELTEHAAACAARLRDA----DRVLLASHIDADGLTSAGIASTALERAGIPFETVFCR 59 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 ++ + + + ++ D GS D + G VI H +E + Sbjct: 60 QLDE------AAVADIAATDYDTVLFTDFGSGQLDIIADHEAAGDFHPVIADHHQPAEGV 113 Query: 190 PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALAT 249 +NP R L+G L AG +++ + P D L L + Sbjct: 114 ETDHHLNPLRFG-LNGASELSGAGASYVLARAL---------EPDAGDNRDLAALAVVGA 163 Query: 250 VCDVVPLIGLNR 261 V D+ G R Sbjct: 164 VGDMQDTNGELR 175 >gi|255019532|ref|ZP_05291624.1| hypothetical protein ACA_1312 [Acidithiobacillus caldus ATCC 51756] gi|254971030|gb|EET28500.1| hypothetical protein ACA_1312 [Acidithiobacillus caldus ATCC 51756] Length = 49 Score = 46.7 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVL 587 + AI FR E GKR + L VN WR + QLR+ Sbjct: 1 MDAIWFRRNSEQSLE-----EGKRYTMVYALSVNRWRSRENLQLRIE 42 >gi|323705398|ref|ZP_08116973.1| phosphoesterase RecJ domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535300|gb|EGB25076.1| phosphoesterase RecJ domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 317 Score = 46.7 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDR 130 +IL D + +I +EKI + D DG SV + + ++ + +++I D Sbjct: 1 MILNDM-------LDSIREAEKIAVVTHVSPDGDGIGSVTALYKAMNKLKKDVSIFIDDD 53 Query: 131 IVDGYGPNPSLME--KFINEGAQLIITVDCG 159 + + Y P + + + L+ITVDC Sbjct: 54 VPEIYRFMPYTDKITRPFDISVDLLITVDCA 84 >gi|289597049|ref|YP_003483745.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469] gi|289534836|gb|ADD09183.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469] Length = 420 Score = 46.7 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 18/141 (12%) Query: 83 RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 R+ +A I + I YDVDG + ++ +L ++ + + Sbjct: 5 ERLKKARELIDKGDDFRILTHYDVDGICAGGIIAHYLLKNGKRFHISFFRNVDKEEISDI 64 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 E + +I D GS+ D+ ++IV+DHH+ + L Sbjct: 65 VNEEDY-------VIMSDMGSSLIDS------LEGNIIVLDHHKPPGDNDK--ILHINPH 109 Query: 200 LDDLSGQGHLCAAGVVFLVLV 220 LD +G C + + +++ Sbjct: 110 LDGYNGAHDACGSTLAYMLTR 130 >gi|269986480|gb|EEZ92765.1| phosphoesterase RecJ domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 352 Score = 46.3 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 12/129 (9%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 + + +F +D DG S AL+ L + Y P D + + E Sbjct: 17 VSKNNDFTVFYHFDTDGIVSAALLTAALKKLNKGVYYYRPTNYED-------YEKMDMQE 69 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH 208 ++ II D + + ++ +IDHHQ+ A NP D + Sbjct: 70 YSKNIIICDMQIRETQLELF---KDKNLCIIDHHQI--INADISAYANPKIWGDNTYTPC 124 Query: 209 LCAAGVVFL 217 +F Sbjct: 125 SLVVYNIFN 133 >gi|318040571|ref|ZP_07972527.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CB0101] Length = 385 Score = 45.9 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + + +N A+ +LE G P F + + + HL +T + ++ Sbjct: 11 SVAELNQAIASLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLVDEQ-ASISG 60 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + L + S G + V G L N+W +++LD P Sbjct: 61 VVWASQLSKLS--VQPSEGDGVLVVGKL--NFWASRASLCVQILDLRPS 105 >gi|310828063|ref|YP_003960420.1| phosphoesterase RecJ domain protein [Eubacterium limosum KIST612] gi|308739797|gb|ADO37457.1| phosphoesterase RecJ domain protein [Eubacterium limosum KIST612] Length = 324 Score = 45.9 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 15/153 (9%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMYI--PDRIVD 133 K I+ I ++ +I DG A A+ + + L N + YI P Sbjct: 1 MKKVPTEILDCIKENQSFLILVHNKPDGDAIGSAIALGKGLKALGKNVDYYIETPLEDKL 60 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + E + + ++ +DC + Y +VIDHH Sbjct: 61 QFFSESRYFEDELQDEYDVVAFLDCSTMEYAFKPVPMVDARTTVVIDHH----------- 109 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRIL 226 N D + A +VF +L + L Sbjct: 110 ATNQGYGDINFLEITAATAELVFRILDALDVEL 142 >gi|317009640|gb|ADU80220.1| hypothetical protein HPIN_05065 [Helicobacter pylori India7] Length = 329 Score = 45.9 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 69 MPDPLILTDCDKAARRIVQ----AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NA 123 MP +L K +RI + + I+ + D D DG + +++M + + Sbjct: 1 MPKKELLK-MSK--KRIFKDFFKEVKQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDF 57 Query: 124 NMYIPDRIVDGYGPNPSLMEKFINEGAQL 152 + P R GYG + +++ Sbjct: 58 FFFSPLRNAHGYGFTHLAINDLLSQPCIF 86 >gi|148643560|ref|YP_001274073.1| ssDNA exonuclease, RecJ [Methanobrevibacter smithii ATCC 35061] gi|148552577|gb|ABQ87705.1| ssDNA exonuclease, RecJ [Methanobrevibacter smithii ATCC 35061] Length = 473 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 44/310 (14%) Query: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE 148 I +S I I+ D DG S A++ I DR+ Y +++ + Sbjct: 19 IESSNDIKIYTHTDCDGICSGAILS------------IILDRLNKDYEIEFVNLDEIEDL 66 Query: 149 GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--KSEEIPAYALVNPNRLDDLS-- 204 +T+ S + ++++DHH A Sbjct: 67 DLDHKLTIFSDLGSGQGVDKNAKDDQKILILDHHPPLRDINYKNDKAYTYLEINPMFYGI 126 Query: 205 -GQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAY 263 G ++C G+ + + F L + L+ + D+ + Sbjct: 127 DGSYYVCGGGLCYFL--------------AKTFGFKDLSWIGVLSAIGDMQNNKTGHFEG 172 Query: 264 VVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLIS 323 + + + L++ I G P A + L + Sbjct: 173 LNEIIQEDAINE-----GLLKVTKNDLNI----YGRSTRPLYVALSYFSDVKLPI----T 219 Query: 324 DDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIV 383 ++ QE +++ +L V ++ R S + E+ + ++ + V IV Sbjct: 220 NNQQEAKVVLEELGVDEKHNRKTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIV 279 Query: 384 GLLAARLKEK 393 G L E+ Sbjct: 280 GDAYTFLNEE 289 >gi|289192804|ref|YP_003458745.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp. FS406-22] gi|288939254|gb|ADC70009.1| phosphoesterase RecJ domain protein [Methanocaldococcus sp. FS406-22] Length = 431 Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 58/439 (13%), Positives = 130/439 (29%), Gaps = 50/439 (11%) Query: 73 LILTDCDKAARRIVQAIYNS-EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 L + +K + I + I N I + +D DG +S ++ + L + ++ + + Sbjct: 2 EKLKEIEKVTKAIKEKILNHYGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV---V 58 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + K L I D GS + + I + +S Sbjct: 59 EHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEDIIKHNFNAIILDHHPPVIKESFVNEN 118 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLV-------LIYRILRQDNKVPLNFDLLSLLDL 244 +NP+ + G + A+GV +LV + I+ + N L + Sbjct: 119 IIQLNPHIFG-VDGAREITASGVCYLVAREFGYYDLSVLAIVGIIGDMQYNPLLGLNKFI 177 Query: 245 VALATVCDVVPLIGLNRAYVVK--GLMVARRQGNPGLKALIERVNISSPI-------TAE 295 V A V ++ + P + L + + Sbjct: 178 VNEAREYRYVKIMNDIVYNIYNVEIYKAIAYCTKPYIPELASEGKAFKFLKDIGIDPNKK 237 Query: 296 NLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL---------------- 339 L + + + + ++ + A L + Sbjct: 238 ELDDTDKKKLLSAIIFKYPKIENLMIDRYLIEHKVRDAFLLSEMLNAVGRNGLFAVGIGI 297 Query: 340 ---NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 + + + +L + + ++ + ++ + + G++G++A+ L + Sbjct: 298 CLEDDECIKIGNQILWEYKKNLINELKSVKLKKLNNIYYFEGKKGMIGIIASILVDDRPV 357 Query: 397 PSFAISFEEDGKGIGSGR-----SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 + E S R G ++ +S A E G GGGH +A+G V + Sbjct: 358 IGY---HIEGEIAKFSARGNRDLVNRGLNLSIAMSVAKEFGG--NGGGHDVASGAVVPKD 412 Query: 452 NFGRLCDFFQKFAHNIVPA 470 + + Sbjct: 413 KIMEFLKRVDEIIGEQLKK 431 >gi|91773749|ref|YP_566441.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM 6242] gi|91712764|gb|ABE52691.1| Nucleic acid binding protein [Methanococcoides burtonii DSM 6242] Length = 707 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAA-SVALMMRFLSHC----SVNANMYIPDR-- 130 K A+ I +AI S+ I++ D DG +VA+ L +A + R Sbjct: 324 MRKVAKEIKRAIIRSKPILLRHHADADGMTAAVAIEKAILPMIREVNGPDAEYHYYKRAP 383 Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179 Y + + L++ VD GST D A++ A GID++V+ Sbjct: 384 SKAPFYELPDVTKDISFALEDAARHGQKLPLVVMVDNGSTEEDVPAMRQAQVYGIDMVVV 443 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 DHH E + Y L + N G Sbjct: 444 DHH-HPDEIVDQYLLGHVNPAHVGGDFGMTAGMLAT 478 >gi|254167146|ref|ZP_04873999.1| DHH family [Aciduliprofundum boonei T469] gi|197624002|gb|EDY36564.1| DHH family [Aciduliprofundum boonei T469] Length = 420 Score = 45.9 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 46/429 (10%), Positives = 118/429 (27%), Gaps = 56/429 (13%) Query: 83 RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 R+ +A I + I YDVDG + ++ +L ++ + + Sbjct: 5 ERLKKARELIDKGDDFRILTHYDVDGICAGGIIAHYLLKNGKRFHISFFRNVDKEEILDI 64 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYAL---- 194 E ++ +D + L + G D I+ + + A Sbjct: 65 VNEENYVIMSDMGSSLIDSLEGNIIVLDHHKPAGDNDKILHINPHLDGYNGAHDACGSTL 124 Query: 195 ---------VNPNRLDDLSGQGHLCAAGVVFL--VLVLIYRILRQD-------------- 229 + P L + G + + L+++ Sbjct: 125 AYMLTREKEMIPFFLAGVFGDKQHIGGLTGLNKELFDELSLKLKKEFVLHGNVVNAILYS 184 Query: 230 ------NKVPLNFDLLSLLDLVALATVCDVVPLIGL--NRAYVVKGLMVARRQGNPGLKA 281 ++ +L + ++ D+ L + + L + + P Sbjct: 185 TEPFFPGLSGRQDEIERMLKDLGISLTKDIEKLSDEEKTKLISMLSLNLIKNSRIPEAGR 244 Query: 282 LIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQ 341 + + + I++ R ++ ++ D+S + + + Sbjct: 245 FV----FDFDVNLGTSIRYLTELIDSSARTDNQSVALAYILGDESAK--------ERMEI 292 Query: 342 NRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAI 401 RR + +++ K++ +++ + + + + L Sbjct: 293 LRREYKGRVIDG-LYKMMENLFEMEHLQYFFADDSYLSSSLATVGSLYLLNPRKATLGIF 351 Query: 402 SFEEDGKG-IGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFF 460 + GS + +G ++ A GGGH +AAG T+ + Sbjct: 352 VDDMVHISARGSKYLVPKVHLGDIMREA-ASKFGGNGGGHDIAAGATIPKGTEEEFLKEV 410 Query: 461 QKFAHNIVP 469 + Sbjct: 411 DILIGKSLS 419 >gi|154151369|ref|YP_001404987.1| phosphoesterase domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999921|gb|ABS56344.1| phosphoesterase, RecJ domain protein [Methanoregula boonei 6A8] Length = 466 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 20/149 (13%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 A+ +I A I I D DG + A++ + ++ IP R V Sbjct: 8 KAASEQIAAAHE----ITIISHIDADGISCEAILSQAIARQG------IPVRSVFVRQLE 57 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKSEEIPAYALVN 196 P M + + + I D G+ + L + DV+++DHH Q P + Sbjct: 58 PLTMPQV-PDDSSFKIFTDLGAGQQNLLAAKGLKEKDVLIVDHHVSQPGEITYPQVNCL- 115 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRI 225 G + AAGV +L+ + Sbjct: 116 ------PYGYTKMSAAGVSYLIAKALDEA 138 >gi|222099838|ref|YP_002534406.1| Phosphoesterase, RecJ domain protein [Thermotoga neapolitana DSM 4359] gi|221572228|gb|ACM23040.1| Phosphoesterase, RecJ domain protein [Thermotoga neapolitana DSM 4359] Length = 333 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%) Query: 85 IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPN 138 IV AI +I++ G D D +SV + L + +P + P+ Sbjct: 4 IVDAISQYNRILVVGHIMPDGDCVSSVLSLTLGLERIGKEVRAAIDYRVPYVFENF--PH 61 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 +E+ ++ +L+I VD S + + VIDHH Sbjct: 62 IERIEQNVDFEPELVIVVDASSPDRIGRFQDLLKEVPSAVIDHHSTN 108 >gi|317968034|ref|ZP_07969424.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CB0205] Length = 383 Score = 45.5 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + + +N A+ +LE G P F + + + HL +T + S ++ Sbjct: 11 SVAELNQAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLVDE-SASISG 60 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L S G + V G L N+W +++LD P Sbjct: 61 VVWSSQRERLS--YQPSEGDGVLVVGKL--NFWASRANLCVQILDIRPA 105 >gi|315452913|ref|YP_004073183.1| single-stranded-DNA-specific exonuclease [Helicobacter felis ATCC 49179] gi|315131965|emb|CBY82593.1| single-stranded-DNA-specific exonuclease [Helicobacter felis ATCC 49179] Length = 111 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 488 VNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL--AHLQMTFESQ 536 N I + + PYG GNP P+F L+S R + H+++ E Sbjct: 12 FNPEFIALYKRGEPYGVGNPTPLFEVC-APLKSWRFLGKTQQHVELVLEDG 61 >gi|124021951|ref|YP_001016258.1| exonuclease VII, large subunit [Prochlorococcus marinus str. MIT 9303] gi|123962237|gb|ABM76993.1| Exonuclease VII, large subunit [Prochlorococcus marinus str. MIT 9303] Length = 385 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N A+ +LE G P F + + + HL +T + ++ A Sbjct: 10 SVRDLNAAIGTLLER------GF-APRFLVE-ASVSKPQ-IKKGHLWLTLTDGN-ASITA 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ L + G + V G L N+W ++V+D P Sbjct: 60 VAWASKLQQLTYRPAEGDG--VTVVGKL--NFWATRASLAVQVIDLRPS 104 >gi|33863908|ref|NP_895468.1| exonuclease VII, large subunit [Prochlorococcus marinus str. MIT 9313] gi|33635491|emb|CAE21816.1| Exonuclease VII, large subunit [Prochlorococcus marinus str. MIT 9313] Length = 385 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N A+ +LE G P F + + + HL +T + ++ A Sbjct: 10 SVRDLNAAIGTLLER------GF-APRFLVE-ASVSKPQ-IKKGHLWLTLTDGN-ASITA 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 +A+ L + G + V G L N+W ++V+D P Sbjct: 60 VAWASKLQQLTYRPAEGDG--VTVVGKL--NFWATRASLAVQVIDLRPS 104 >gi|15669018|ref|NP_247822.1| hypothetical protein MJ_0831 [Methanocaldococcus jannaschii DSM 2661] gi|2833617|sp|Q58241|Y831_METJA RecName: Full=Uncharacterized protein MJ0831 gi|1591518|gb|AAB98830.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 432 Score = 45.5 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 60/437 (13%), Positives = 133/437 (30%), Gaps = 50/437 (11%) Query: 73 LILTDCDKAARRIVQAIYNS-EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 L + +K + I + I N I + +D DG +S ++ + L + ++ + + Sbjct: 3 EKLKEIEKVTKAIKEKILNHYGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV---V 59 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + K L I D GS + + I + S Sbjct: 60 EHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIIKHNFNAIILDHHPPVIKDSFINEN 119 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLV-------LIYRILRQDNKVPLNFDLLSLLDL 244 +NP+ + G + A+GV +LV + I+ + N L + Sbjct: 120 IIQLNPHIFG-VDGSREITASGVCYLVAREFGYYDLSVLAIVGIIGDMQYNPLLGLNKFI 178 Query: 245 VALATVCDVVPLIGLNRAYVV--KGLMVARRQGNPGLKALIERVNISSPI-------TAE 295 V A V ++ + + P + L + + Sbjct: 179 VNEAREYRYVKIMNDIVYNIYDVEIYKAIAYCTKPYIPDLASEGKAFKFLKDIGIDPNKK 238 Query: 296 NLGYMIGPSINAGGRIGESNL----GSRLLISDDSQELEMLAMKLDVL------------ 339 L + + + R LI ++ +L+ L+ + Sbjct: 239 QLDDTDKKKLLSAIIFKYPKIENLLIDRYLIEHKVRDAFLLSEMLNAVGRNGLFAVGIGI 298 Query: 340 ---NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396 + + + +L + + ++ + ++ + + G++G++A+ L + Sbjct: 299 CLEDDECIKIGNQILWEYKKNLINELKSVKLKKLNNIYYFEGKKGMIGIIASILVD---D 355 Query: 397 PSFAISFEEDGKGIGSGR-----SIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 E S R G ++ ++ A E G GGGH +A+G V + Sbjct: 356 KPVIGYHIEGDIAKFSARGNRDLVNRGLNLSVAMAVAKEFGG--NGGGHDVASGAVVSKD 413 Query: 452 NFGRLCDFFQKFAHNIV 468 + + Sbjct: 414 KVQEFLKRVDEIIGEQL 430 >gi|328480022|gb|EGF49040.1| single-stranded DNA-specific exonuclease [Lactobacillus rhamnosus MTCC 5462] Length = 66 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDY 56 + ++W Q ++Q A+P +A +L R + I Sbjct: 25 TQYQWQLAE-QPDPATTQQLSQTLAVPPFLATLLWQRGIKISQ 66 >gi|254167796|ref|ZP_04874646.1| DHH family [Aciduliprofundum boonei T469] gi|197623324|gb|EDY35889.1| DHH family [Aciduliprofundum boonei T469] Length = 356 Score = 45.1 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 18/141 (12%) Query: 83 RRIVQA---IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP 139 R+ +A I + I YDVDG + ++ +L ++ + + Sbjct: 5 ERLKKARELIDKGDDFRILTHYDVDGICAGGIIAHYLLKNGKRFHISFFRNVDKEEISDI 64 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 E + +I D GS+ D+ ++IV+DHH+ + L Sbjct: 65 VNEEDY-------VIMSDMGSSLIDS------LEGNIIVLDHHKPPGDNDK--ILHINPH 109 Query: 200 LDDLSGQGHLCAAGVVFLVLV 220 LD +G C + + +++ Sbjct: 110 LDGYNGAHDACGSTLAYMLTR 130 >gi|317177775|dbj|BAJ55564.1| hypothetical protein HPF16_0967 [Helicobacter pylori F16] gi|317178110|dbj|BAJ55899.1| hypothetical protein HPF16_1302 [Helicobacter pylori F16] Length = 129 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL 152 + +++ Sbjct: 76 INDLLSKPCIF 86 >gi|237756076|ref|ZP_04584654.1| phosphoesterase, RecJ domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691769|gb|EEP60799.1| phosphoesterase, RecJ domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 330 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 8/125 (6%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + I + + I+IF D DG S+ + FL N M + D Sbjct: 1 MEMSIPIIERLKREEKDILIFTHENPDCDGIGSMIALYLFLKKLGKNVTMAMKDDFPFVC 60 Query: 136 GPNP---SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 P + + IN + I VD S + + ++I IDHH E Sbjct: 61 DFMPEVNEIKKLPINHKFSVAILVDASSKKRAGTEVYAD---EIIRIDHHIGGEFESIYD 117 Query: 193 ALVNP 197 + + Sbjct: 118 IVDDF 122 >gi|33239563|ref|NP_874505.1| exonuclease VII, large subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237088|gb|AAP99157.1| Exonuclease VII, large subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 384 Score = 44.7 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N A+ ++L G P F + + + + HL +T ++ A Sbjct: 10 SVGELNQAIGNLLSR------GF-APTFLL-HATVSKAQ-LKNGHLWLTLTD-GKASISA 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + + ++ G + + G L N+W+ ++V+ P Sbjct: 60 VIWSSSLKNISFRPVEEDG--VELLGKL--NFWQNRATLVVQVIQIRPT 104 >gi|72383296|ref|YP_292651.1| exodeoxyribonuclease VII large subunit [Prochlorococcus marinus str. NATL2A] gi|72003146|gb|AAZ58948.1| Exodeoxyribonuclease VII large subunit [Prochlorococcus marinus str. NATL2A] Length = 386 Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 G P F +S + HL +T ++ A+A+ L Q G Sbjct: 30 GF-APKFILEAAVSKSQ--IKKGHLWLTLTD-GKASVDAVAWSSTIKSLKFLPKQDDG-- 83 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + G L N+W R ++V D P Sbjct: 84 VVIIGKL--NFWESQARVSVQVFDIRPS 109 >gi|288927246|ref|ZP_06421101.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae D17] gi|288335984|gb|EFC74410.1| single-stranded-DNA-specific exonuclease RecJ [Prevotella buccae D17] Length = 50 Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASP 591 + IAF + + + + N ++ ++ QL++ D P Sbjct: 2 VNGIAFGQSAS----ARYIKSKRSFDIVYTIEDNVFKHNQ-VQLQIEDIRP 47 >gi|297619456|ref|YP_003707561.1| phosphoesterase DHHA1 [Methanococcus voltae A3] gi|297378433|gb|ADI36588.1| phosphoesterase DHHA1 [Methanococcus voltae A3] Length = 497 Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 75 LTDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 L + + I I N + I + +D DG S A+++ L + ++ I + + D Sbjct: 11 LENFNNTINLIKSKIDNYQGIIRLITHHDPDGLTSGAILINTLMRINKQFHITIIENLND 70 Query: 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 N QL I D GS D + A ++ I++DHH VK +E Sbjct: 71 EKIEEFKKEATCKN--DQLFIFSDMGSGQIDKIINAK---LNAIILDHHPVKIKEYVINN 125 Query: 194 LVNPNRLDD 202 N ++ Sbjct: 126 EKNDKTNNN 134 >gi|20089795|ref|NP_615870.1| hypothetical protein MA0917 [Methanosarcina acetivorans C2A] gi|19914737|gb|AAM04350.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 714 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 19/156 (12%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASV-----ALMMRFLSHCSVNANMYIPDR-- 130 A+ I +AI++S I++ D DG S A++ +A Y R Sbjct: 330 MLHVAKEIKKAIFHSTPIILRHHADADGITSAIAIERAILPLITEIGGADAEYYFYKRAP 389 Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179 Y + + L+I VD GST D +++ A GI+++V+ Sbjct: 390 SKAPFYELADVTRDISFALEDYARHGQKMPLVILVDNGSTEEDVPSMRQAKVYGINMLVV 449 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 DHH + + Y + + N G Sbjct: 450 DHH-HPDDIVDQYLIGHANPAHVGGDFGVTAGMLCA 484 >gi|170289047|ref|YP_001739285.1| phosphoesterase domain-containing protein [Thermotoga sp. RQ2] gi|170176550|gb|ACB09602.1| phosphoesterase RecJ domain protein [Thermotoga sp. RQ2] Length = 333 Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCS----VNANMYIPDRI 131 D+ IV+ + +KI++ G D D +SV + L + IP Sbjct: 1 MDE----IVKVLSRHDKILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVF 56 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 P+ +E+ +N +L++ VD S+ + +VIDHH + Sbjct: 57 EKF--PHIDKIEENLNFDPELLVVVDASSSDRIGKFQNLLDKVPSVVIDHHSTNTNFGNW 114 Query: 192 YAL 194 + Sbjct: 115 NWV 117 >gi|225848967|ref|YP_002729131.1| phosphoesterase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643889|gb|ACN98939.1| phosphoesterase, RecJ domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 325 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 +K I + + I+IF D DG S+ + FL N M + D + Y Sbjct: 1 MEKTVPVIERLKREEKDILIFTHENPDGDGIGSMIALYLFLKKLGKNVTMAMKDDVPYVY 60 Query: 136 GPNPS---LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 P + + IN + I VD + Q ++I IDHH E Sbjct: 61 NFLPHVNEIKKLPINHKFSVAILVDAA---HRKRAGTEIQAHELIRIDHHVGGEFESIYD 117 Query: 193 ALVNP 197 + + Sbjct: 118 CVDDY 122 >gi|73670910|ref|YP_306925.1| hypothetical protein Mbar_A3472 [Methanosarcina barkeri str. Fusaro] gi|72398072|gb|AAZ72345.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 710 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 19/156 (12%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASV-----ALMMRFLSHCSVNANMYIPDR-- 130 A+ I +AI +S I++ D DG S A++ ++A Y R Sbjct: 326 MLHVAKEIKKAILHSTPIILRHHADADGITSAIAIERAILPLITEIGGMDAEYYFYKRAP 385 Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179 Y + + LII VD GST D +++ A GID++VI Sbjct: 386 SKAPFYELADVTRDISFALEDLSRHGQKMPLIILVDNGSTEEDVPSMRQAKVYGIDMLVI 445 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 DHH E + Y + + N G Sbjct: 446 DHH-HPDEIVDQYLIGHVNPAHVGGDFGVTAGMLCA 480 >gi|124485116|ref|YP_001029732.1| hypothetical protein Mlab_0289 [Methanocorpusculum labreanum Z] gi|124362657|gb|ABN06465.1| phosphoesterase, RecJ domain protein [Methanocorpusculum labreanum Z] Length = 399 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 35/198 (17%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 ++AA+ I + E + ++ +D DG +S A+M L + + + + Sbjct: 3 LEEAAKTIADRLRGMEYVEMYTHHDADGISSAAIMSIALKREGIAFRLRFLPVLTESDVT 62 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 NP + + D G++ ++IDHH + Sbjct: 63 NP-----------DISLLCDLGASC-------AGLPETTMIIDHHVPYTTSKYHINPRLF 104 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + L AAG +LV + L LV L + D L Sbjct: 105 GVDGET----ELSAAGCAYLVANALSDN-------------RDLAGLVLLGIIGDGQKLA 147 Query: 258 GLNRAYVVKGLMVARRQG 275 G+N + +G+ Sbjct: 148 GMNEKIIGEGIANNLINP 165 >gi|332673827|gb|AEE70644.1| conserved hypothetical protein [Helicobacter pylori 83] gi|332674171|gb|AEE70988.1| conserved hypothetical protein [Helicobacter pylori 83] Length = 129 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A + I+ + D D DG + +++M V + + P R GYG Sbjct: 17 DFLKEAKQHH-PIVFYTDNDCDGMLASSVLMSMCYRLGVKDFFFFSPLRNAHGYGFTDLA 75 Query: 142 MEKFINEGAQL 152 + +++ Sbjct: 76 INDLLSKPCIF 86 >gi|296108700|ref|YP_003615649.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus ME] gi|295433514|gb|ADG12685.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus ME] Length = 430 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 64/442 (14%), Positives = 160/442 (36%), Gaps = 62/442 (14%) Query: 73 LILTDCDKAARRIVQAIYNS----EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP 128 + L+ +K ++ + I N + I + +D DG +S ++ + L + + + Sbjct: 1 MELSGLEK-IEKLSKEIKNRIVEYDFIKVITHHDTDGLSSGTILTKTLFRANKTFQVKVV 59 Query: 129 DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--QVKS 186 + + + ++++K +++ L I D GS + + +D I++DHH +++ Sbjct: 60 EHL------SRNVIDKLVSKDNSLYIFADMGSGQIHDIL---EKEVDAIILDHHPPEIEE 110 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI------------------------ 222 E I +NP+ G + A+G + V Sbjct: 111 EFIDNIVQLNPHLYG-FDGAKEITASGTCYFVAREFGYYDLSQMAIVGMIGDMQFPPMGL 169 Query: 223 -------YRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG----LMVA 271 R R + +++ C + LN + L + Sbjct: 170 NKFIVNEAREKRYIKIFNDIIYNIYGVEIYKAMAYCTKPYIEDLNSEAKAEKFLLNLKID 229 Query: 272 RRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 ++ + + + ++ E +I + ++ +++L S +L + Sbjct: 230 PKKKDLSKEEYKKIISHLIFKYPEEAEKLIIERVLLRHKVRDAHLLSEMLNAVGRHGYFS 289 Query: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLK 391 + + + + + + + +L + +L++ ++ S+ ++ G +G++A L Sbjct: 290 IGIGIGLEDDECIRIGNKVLWDYKKALLSEIKRVELKSLRNIKYFEGRKGYIGIVAGILA 349 Query: 392 EKFGRPSFAISFEEDGKGIGSGRSIE-----GFDIGKMVSFAVEEGILVKGGGHAMAAGL 446 ++ + I E S R + G ++ K++S A E G GGGH +A+G Sbjct: 350 KEKPVIGYYI---EGDVAKFSARGNKKLVDRGLNLSKVMSIAKEFGG--TGGGHNIASGA 404 Query: 447 TVERVNFGRLCDFFQKFAHNIV 468 V + + + + Sbjct: 405 MVPKEKVKEFLERVDELIGEQL 426 >gi|322371457|ref|ZP_08046006.1| phosphoesterase RecJ domain protein [Haladaptatus paucihalophilus DX253] gi|320548989|gb|EFW90654.1| phosphoesterase RecJ domain protein [Haladaptatus paucihalophilus DX253] Length = 470 Score = 44.4 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 23/179 (12%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R+ A + +++ D DG S A+ L + + Sbjct: 16 ADRLRDA----DDVLLASHIDADGLTSAAIASSALERAGLPFETVF------CKQLDAEA 65 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200 + + ++ D GS D + + G + ++ DHHQ + + L Sbjct: 66 LAAIAATDHETVLFTDFGSGQLDIIAEHESAGDFEPVIADHHQPADADTEFHLNPLLFGL 125 Query: 201 DDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGL 259 D S AG +++ + P D L L + V D+ G Sbjct: 126 DGSSEL---SGAGASYVLARAL---------EPDAGDNRDLAALAVVGAVGDMQISDGE 172 >gi|303243738|ref|ZP_07330079.1| phosphoesterase RecJ domain protein [Methanothermococcus okinawensis IH1] gi|302485980|gb|EFL48903.1| phosphoesterase RecJ domain protein [Methanothermococcus okinawensis IH1] Length = 452 Score = 44.4 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 74/461 (16%), Positives = 142/461 (30%), Gaps = 95/461 (20%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM----YIPDRIVD 133 K RI ++ I + +D DG S AL+++ L + ++ Y+ VD Sbjct: 19 LKKITERIK---NHNGLIRVITHHDTDGLTSGALIIKMLYRLNKEFHLSIVEYLSKEFVD 75 Query: 134 GYGPNPSLMEKFINEGAQ------LIITVDCGSTSYDALQYATNQGIDVIVIDHHQV--K 185 G + + L I D GS+ + NQG++ I++DHH Sbjct: 76 KLGEEYNNRYNNNDNNNNNNEDNILYIFCDMGSS---RINDILNQGLNAIILDHHPPVIN 132 Query: 186 SEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLV 245 E+ +N + L + A+GV +LV F L L Sbjct: 133 DLEVKEIYQLNAHILGINGA-KEISASGVCYLV--------------AREFGFYDLSALA 177 Query: 246 ALATVCDVV--PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGP 303 + D+ P G+N+ + + G N I Sbjct: 178 ITGAIGDMQHKPFSGMNKYIINEAREHRYLTGILKDIIYNCYDLPVWKSMLYNTQPYIRE 237 Query: 304 SINAGGRIGESN---------------------------------LGSRLLISDDSQELE 330 N I + R +I + Sbjct: 238 LNNKEKIINFLKKLNIDPEKRNLNEEDRQKLKIALMPYVEKEEDIIVDRYVIKHKVDDAF 297 Query: 331 MLAMKLDVL---------------NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG 375 L+ L+ + + + + + +++ + + Q S+ +E Sbjct: 298 YLSELLNACGRKGLGSVGIGAAVEDDECINIAKDIYIEYKEEIIQEIRNTQINSLNNIEY 357 Query: 376 DRWHPGIVGLLAARLKEKFGRPSFAISFEEDGK-GIGSGR-----SIEGFDIGKMVSFAV 429 G+VG++A+ F + + E+G+ S R EG ++ + + A Sbjct: 358 FFGKKGMVGIIAS----LFVKDKPVLGIYEEGEYYKISSRGNKNLVNEGLNLSEAMKIAY 413 Query: 430 EEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 + G GGGH +A+G V +++ + + Sbjct: 414 KFGG--NGGGHNVASGARVPKIHLDEFLKEVDEIVGKQLKK 452 >gi|21228136|ref|NP_634058.1| hypothetical protein MM_2034 [Methanosarcina mazei Go1] gi|20906581|gb|AAM31730.1| conserved protein [Methanosarcina mazei Go1] Length = 710 Score = 44.4 bits (103), Expect = 0.052, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 19/156 (12%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASV-----ALMMRFLSHCSVNANMYIPDR-- 130 A+ I +AI +S I++ D DG S A++ +A Y R Sbjct: 326 MLHVAKEIKKAILHSTPILLRHHADADGITSAIAIERAILPLITEIGGSDAEYYFYKRAP 385 Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179 Y + + L+I VD GST D A++ A GID++VI Sbjct: 386 SKAPFYELADVTRDISFALEDYARHGQKMPLVIQVDNGSTEEDVPAMRQANVYGIDMLVI 445 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVV 215 DHH + + Y + + N G Sbjct: 446 DHH-HPDDIVDQYLIGHVNPAHVGGDFGVTAGMLCA 480 >gi|217033161|ref|ZP_03438618.1| hypothetical protein HPB128_13g2 [Helicobacter pylori B128] gi|298737055|ref|YP_003729585.1| hypothetical protein HPB8_1564 [Helicobacter pylori B8] gi|216945110|gb|EEC23811.1| hypothetical protein HPB128_13g2 [Helicobacter pylori B128] gi|298356249|emb|CBI67121.1| hypothetical protein HPB8_1564 [Helicobacter pylori B8] Length = 265 Score = 44.4 bits (103), Expect = 0.055, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSL 141 + +A I+ + D D DG + +++M + + + P R V GYG Sbjct: 17 DFLKEA-KQHRPIVFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNVHGYGFTDLA 75 Query: 142 MEKFINEGAQL 152 + +++ Sbjct: 76 INDLLSQPYIF 86 >gi|149370581|ref|ZP_01890270.1| hypothetical protein SCB49_13995 [unidentified eubacterium SCB49] gi|149356132|gb|EDM44689.1| hypothetical protein SCB49_13995 [unidentified eubacterium SCB49] Length = 340 Score = 44.4 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 27/194 (13%) Query: 93 EKIMIFGDYDVDG--AASVALMMRFLSHCSVNANMYIPDRIVDG------------YGPN 138 +KI+I G + DG S + + FL + + +P+ D Y N Sbjct: 17 KKIVIVGHKNPDGDAVGSTSALSLFLKSQGHDTQVIVPNDFPDFLKWMPASEDILIYSQN 76 Query: 139 PSLMEKFINEGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVN 196 + + I + + T+D + D TN D I+IDHHQ + Sbjct: 77 VTQANQLIKDADIIC-TLDFNSFTRVGDMQDALTNATADYIMIDHHQSPDDYAVLT---- 131 Query: 197 PNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 S +V+ + + + + N + D + Sbjct: 132 ------YSDTTMGSTCEMVYHFIDAMGQTNHISEAMATNMYTGIMTDTGSFRFASTTAKT 185 Query: 257 IGLNRAYVVKGLMV 270 + + G+ Sbjct: 186 HNVIAHLMETGIQH 199 >gi|156042990|ref|XP_001588052.1| hypothetical protein SS1G_11295 [Sclerotinia sclerotiorum 1980] gi|154695679|gb|EDN95417.1| hypothetical protein SS1G_11295 [Sclerotinia sclerotiorum 1980 UF-70] Length = 374 Score = 44.4 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---N 122 + P P + A I + + +I D D DG ++ +M R L + N Sbjct: 37 EEIWPAPRD--QLESAYDFIRECAKAQKPTLIVPDKDADGLSAGVIMYRTLIKLGLEEKN 94 Query: 123 ANMYIPDRIVDGYGPNPSL-MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 ++++ + G + + + +I +D GS + ++ ++IDH Sbjct: 95 LDIHL---VRKGSNIHEEYERKAMAEKKPSYVIVLDQGSRGGLPVID--DKSARSMIIDH 149 Query: 182 HQVKSEEIPAYALV 195 H A + Sbjct: 150 HFSDDFPKNAINFI 163 >gi|154151775|ref|YP_001405393.1| phosphoesterase domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|154000327|gb|ABS56750.1| phosphoesterase, RecJ domain protein [Methanoregula boonei 6A8] Length = 405 Score = 44.4 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 25/50 (50%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 +++A+ + + I + + ++ +D DG A+ A++ + + + I Sbjct: 3 LEESAKVVAEQIRRQQFVEVYAHHDADGIAAGAILCHAMLRAGIRFRLRI 52 >gi|124024875|ref|YP_001013991.1| exonuclease VII, large subunit [Prochlorococcus marinus str. NATL1A] gi|123959943|gb|ABM74726.1| Exonuclease VII, large subunit [Prochlorococcus marinus str. NATL1A] Length = 386 Score = 44.4 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 G P F + + + HL +T ++ A+A+ L Q G Sbjct: 30 GF-APKFIVE-ATVSKSQ-IKKGHLWLTLTD-GKASVDAVAWSSTIKSLKFLPKQDDG-- 83 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + G L N+W R ++V D P Sbjct: 84 VVIIGKL--NFWESQARVSVQVFDIRPS 109 >gi|76800756|ref|YP_325764.1| single-stranded-DNA-specific exonuclease [Natronomonas pharaonis DSM 2160] gi|76556621|emb|CAI48192.1| single-stranded-DNA-specific exonuclease [Natronomonas pharaonis DSM 2160] Length = 478 Score = 44.0 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 11/126 (8%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL 141 A R+++A + +++ D DG S A+ L + + + Sbjct: 19 AERLLEA----DSVLLASHIDADGLTSAAVAATALERAGLPFEVVF------EKQLDADA 68 Query: 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRL 200 + + ++ D GS D + G ++ DHHQ + + Sbjct: 69 LAALAGREYETVLFTDFGSGQLDIIADHEAAGDFTPVIADHHQPAEATTDYHLNPLLEGI 128 Query: 201 DDLSGQ 206 D S Sbjct: 129 DGASEL 134 >gi|169596751|ref|XP_001791799.1| hypothetical protein SNOG_01145 [Phaeosphaeria nodorum SN15] gi|160707366|gb|EAT90794.2| hypothetical protein SNOG_01145 [Phaeosphaeria nodorum SN15] Length = 830 Score = 44.0 bits (102), Expect = 0.069, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 19/172 (11%) Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN---ANMYIPDRIVDGYGPNPSLMEKFI 146 + ++ +I D D DG +S +++ L+ ++ ++Y P G + I Sbjct: 443 RSGKQTLILPDKDADGLSSGSILHHTLTTLGLSPSMISVYFPS---KGANIHDESTADAI 499 Query: 147 NEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSG 205 + + I V D GS + L +VIDHH P A D Sbjct: 500 SAVSPTFIFVLDQGSRNTPPLT---PAPHTCLVIDHHFADECGFPDGAD-YVTAHDCPPV 555 Query: 206 QGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 +A + + + + ++ L L +L L + P Sbjct: 556 ---ATSALLTYHICLPLHADLSDK-----ISWLCALGTHGDLGSTIKWQPPF 599 >gi|116754783|ref|YP_843901.1| phosphoesterase domain-containing protein [Methanosaeta thermophila PT] gi|116666234|gb|ABK15261.1| phosphoesterase, RecJ domain protein [Methanosaeta thermophila PT] Length = 722 Score = 44.0 bits (102), Expect = 0.074, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 19/153 (12%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-----VALMMRFLSHCSVNANMYIPDR-- 130 A+ I +AI+ S+ I+I D DG ++ A++ +A Y R Sbjct: 332 MRAVAKAIRRAIFKSKPIVIRHHADADGISAAVAIETAILPLMKEVGGPDAEYYSYRRAP 391 Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179 Y + + L++ +D GST D A+++A G++++V+ Sbjct: 392 SKAPFYELEDVTKDLSYALEDQSRYGQKMPLVVLIDNGSTEEDVPAMKHAQVYGLEMVVV 451 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 DHH ++ + Y + + N G Sbjct: 452 DHH-HPNDIVDQYLIAHVNPAHAGGDFGITTGM 483 >gi|148270327|ref|YP_001244787.1| phosphoesterase domain-containing protein [Thermotoga petrophila RKU-1] gi|147735871|gb|ABQ47211.1| phosphoesterase, RecJ domain protein [Thermotoga petrophila RKU-1] Length = 333 Score = 44.0 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCS----VNANMYIPDRI 131 D+ IV+ + +KI++ G D D +SV + L + IP Sbjct: 1 MDE----IVKVLSRHDKILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVF 56 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 P+ +E+ +N +L++ VD S + +VIDHH Sbjct: 57 EKF--PHIDKIEENLNFDPELLVVVDVSSPDRIGKFQDFLDKVPSVVIDHHSTN 108 >gi|288560822|ref|YP_003424308.1| archaea-specific RecJ-like exonuclease [Methanobrevibacter ruminantium M1] gi|288543532|gb|ADC47416.1| archaea-specific RecJ-like exonuclease [Methanobrevibacter ruminantium M1] Length = 780 Score = 44.0 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 27/154 (17%) Query: 59 DFL--NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VAL---M 112 DFL +P + L P +AA+ I +A+ + I++ D DG S VA+ + Sbjct: 343 DFLIESPVLERLKPK------MREAAKVIRRAVLDGRSILVRHHNDADGICSGVAIEKAV 396 Query: 113 MRFLSHCSV--NANMYIPDR---IVDGYGPNPSLME--------KFINEGAQLIITVDCG 159 + +L + +A + R Y + + + LI+ +D G Sbjct: 397 IPYLKENNPDNDAEYHYFKRSPSKAPFYELEDVVKDLSFALEDLDRHGQKLPLIVLLDNG 456 Query: 160 STSYDAL--QYATNQGIDVIVIDHHQVKSEEIPA 191 ST D + A I+++VIDHH + Sbjct: 457 STEEDIVALMQAKIYDIEIVVIDHHSPGNLITKT 490 >gi|303240813|ref|ZP_07327326.1| phosphoesterase RecJ domain protein [Acetivibrio cellulolyticus CD2] gi|302591701|gb|EFL61436.1| phosphoesterase RecJ domain protein [Acetivibrio cellulolyticus CD2] Length = 318 Score = 44.0 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Query: 83 RRIVQAIYNSEKIMIFGDYDVDG---AASVALMMRFLSHCSVNANMY----IPDRIVDGY 135 +RI+ AI N++ I I VDG +SVAL + L + +Y IP Sbjct: 4 KRIIDAINNAKSIAILPHVSVDGDGLGSSVALAL-ALEKMGKDITVYIEEEIPATYEFLP 62 Query: 136 GPNPSLMEKFINEGAQLIITVDCG 159 G + + K + L++ +D G Sbjct: 63 GKDYVEVYKSNPKKHDLVLALDTG 86 >gi|160902050|ref|YP_001567631.1| phosphoesterase domain-containing protein [Petrotoga mobilis SJ95] gi|160359694|gb|ABX31308.1| phosphoesterase RecJ domain protein [Petrotoga mobilis SJ95] Length = 335 Score = 44.0 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 11/161 (6%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRI---- 131 + + IV+ I ++ I+I G D D +S+ M L I D I Sbjct: 1 MSENLKEIVEEISKNDNILIVGHILPDGDDVSSLVSMTLGLEKLGKKVTAAIDDEIPEYL 60 Query: 132 -----VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 V +EK I + +++ +DC S V++IDHH + Sbjct: 61 LQFPLVKSKIKKFEDVEKIIYKNYDIMVILDCSSPDRIGRFEKYLNAFHVLLIDHHVTNT 120 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR 227 + L + V + + +L Sbjct: 121 YFGNLNWVDPSMASTAQMVYRILTSLNVEYDKELATMNLLG 161 >gi|219853096|ref|YP_002467528.1| phosphoesterase RecJ domain protein [Methanosphaerula palustris E1-9c] gi|219547355|gb|ACL17805.1| phosphoesterase RecJ domain protein [Methanosphaerula palustris E1-9c] Length = 468 Score = 43.6 bits (101), Expect = 0.086, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 23/231 (9%) Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNA-NMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 + I D DG S A++ + + A YI R +D L + + E L Sbjct: 23 VTIISHIDADGITSEAILAEAVQRAGIPATTHYI--RQLD------PLTIRTVPEDRSLK 74 Query: 154 ITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 + VD G+ + L+ +V++ DHH + +P G L AAG Sbjct: 75 VFVDLGAGQQNLLEERGLTVDEVLIADHHVAQPATLPY-----QQVNGVPYGHTRLSAAG 129 Query: 214 VVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA------TVCDVVPLIGLNRAYVVKG 267 V +L+ + R V + ++ ++ L T+ D G RA Sbjct: 130 VAYLIAKEMDRKNTDLASVAVVGNVGDMMARETLGLTGIARTIVDDGVANGSIRATAR-D 188 Query: 268 LMVARRQGNPGLKALIERVNISSPITAENL--GYMIGPSINAGGRIGESNL 316 L P L + P + ++ + + + Sbjct: 189 LNCYGTSTRPIHVCLSYNDDPLLPGISNDINGSLRFLQKVGVPLKTRDGRW 239 >gi|239617847|ref|YP_002941169.1| phosphoesterase RecJ domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506678|gb|ACR80165.1| phosphoesterase RecJ domain protein [Kosmotoga olearia TBF 19.5.1] Length = 326 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 23/175 (13%) Query: 89 IYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPNPSLM 142 I ++KI++ G D D +SV + L + IP + + + + Sbjct: 11 IEQAKKIVVCGHIMPDGDCISSVMSLSLGLEKLGKKVTPAIDWEIPSKFYEFPHVDKIIP 70 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQ-GIDVIVIDHHQVKSEEIPAYALVNPNRLD 201 + + L+I VD S + + GI IVIDHH+ + + Sbjct: 71 YSEELQLSDLLIVVDASSPDRIGGFQSLMKSGIRTIVIDHHKTNTYFGNVCWV------- 123 Query: 202 DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPL 256 + A +V+ +L L+ D LL+ L + + Sbjct: 124 ---DPKYSSTAQMVYHLLKLL------DVNYDEELALLNYLGIATDTGFFRYSSV 169 >gi|157363605|ref|YP_001470372.1| phosphoesterase domain-containing protein [Thermotoga lettingae TMO] gi|157314209|gb|ABV33308.1| phosphoesterase RecJ domain protein [Thermotoga lettingae TMO] Length = 322 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 85 IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPN 138 I+ I S+ I++ G D D +SV + L + +P + YG Sbjct: 6 IISQINESKFILVTGHIMPDGDDISSVTSLAVGLERLGKTVVGSIDYPVPWYYRNFYGVE 65 Query: 139 P-SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 E+ + LII VDC + IVIDHH Sbjct: 66 KLKTYEQAKDLDPDLIIVVDCSTPDRVGRFQNLLNDRKTIVIDHH 110 >gi|113953310|ref|YP_731724.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CC9311] gi|123031574|sp|Q0I748|EX7L_SYNS3 RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit gi|113880661|gb|ABI45619.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. CC9311] Length = 390 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 8/88 (9%) Query: 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKR 564 G P F + + V HL +T + ++ A+A+ L + + G Sbjct: 25 GF-APRFVIQ-ATVSRPQ-VKKGHLWLTLSDGE-ASITAVAWASKLKQLD--FVPADGDG 78 Query: 565 MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + V G L N+W ++VLD P Sbjct: 79 VTVIGKL--NFWSARASLAVQVLDMRPS 104 >gi|222480957|ref|YP_002567194.1| phosphoesterase DHHA1 [Halorubrum lacusprofundi ATCC 49239] gi|222453859|gb|ACM58124.1| phosphoesterase DHHA1 [Halorubrum lacusprofundi ATCC 49239] Length = 473 Score = 43.2 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 23/190 (12%) Query: 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 P P + + A R+ A +++++ D DG S A+ L+ ++ + Sbjct: 7 PVPELTARANACAGRLRAA----DRVLLASHIDADGLTSGAVASTALARAGIDHEVVF-- 60 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEE 188 + + +++ D GS D + ++G ++ DHHQ + Sbjct: 61 ----EKQLDAESIAGIAAREFDVVLFTDFGSGQLDVIVGHEDRGDFVPVIADHHQPADRD 116 Query: 189 IPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA 248 + L+ S AG +++ + + D L L + Sbjct: 117 TDFHLNPLLEGLNGASEL---SGAGASYVLARAL---------EGPDGDNRDLAALAVVG 164 Query: 249 TVCDVVPLIG 258 V D+ G Sbjct: 165 AVGDMQDSDG 174 >gi|150400577|ref|YP_001324343.1| phosphoesterase domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013280|gb|ABR55731.1| phosphoesterase RecJ domain protein [Methanococcus aeolicus Nankai-3] Length = 459 Score = 43.2 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 43/239 (17%) Query: 82 ARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY----- 135 +I I N + I I D DG S A++++ L+ + ++ I +++ + + Sbjct: 18 VEKITNKIKNHDGLIRIITHNDADGLTSGAIIIKLLTRQNKKFHLSIVEQLSEDFINELG 77 Query: 136 ----------GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH--Q 183 + N + L I D GS + + ++ I++DHH + Sbjct: 78 KENTINNIISKNESKGSDDHNNSNSVLYIFSDMGSGQINKIL---ENNLNSIILDHHPTE 134 Query: 184 VKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 + EI +NP+ + G + A+GV +LV F L Sbjct: 135 INDIEIENILQLNPHIFK-IDGSNEISASGVCYLV--------------AREFGYYDLSV 179 Query: 244 LVALATVCDVV--PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 L + D+ P IGLN+ + +G+ L + + I+ + Sbjct: 180 LAITGAIGDMQHLPFIGLNKFILNEGMEKQHIN-----GILRDIIYNCYDISITDSILF 233 >gi|108757296|ref|YP_631770.1| hypothetical protein MXAN_3580 [Myxococcus xanthus DK 1622] gi|108461176|gb|ABF86361.1| hypothetical protein MXAN_3580 [Myxococcus xanthus DK 1622] Length = 368 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 14/127 (11%) Query: 62 NPSIRLLMPDPLILTDCDK----AARR-IVQAIY-----NSEKIMIFGDYDVDGAASVAL 111 P+ L P++L A+ + A +++ VDG A+ AL Sbjct: 7 RPTALNLH--PMLLGHMKAPHWPASEEALANARDFLMTLKDRHVVVAPHPSVDGLAAGAL 64 Query: 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171 M+R L +P + + +P+ ++ + ++ S + D Sbjct: 65 MLRALQAMGARVKAQVPAKGE--HALSPTFQQRLRAAQPDAWVVLEMSSDAMDDSVAPPG 122 Query: 172 QGIDVIV 178 ++ Sbjct: 123 LPTLIVA 129 >gi|170291031|ref|YP_001737847.1| phosphoesterase domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175111|gb|ACB08164.1| phosphoesterase RecJ domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 445 Score = 43.2 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 29/189 (15%) Query: 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 + + D DG +S + + L +P + + +L+ + E Sbjct: 22 KGSHVRVISHIDADGLSSAGIFISILKRF------RVPFHLSSVKYVSDTLISELKKEPY 75 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 L I +D GS + L + V V+DHH+ SE+IP D + Sbjct: 76 DLYIFLDLGSGEVELL---KSMEKRVFVVDHHRPSSEDIPMLNPFTQGIDGD----RDVS 128 Query: 211 AAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVP---LIGLNRAYVVKG 267 ++G+ FL +YR +D S++ + + D+ GLN A + G Sbjct: 129 SSGLCFL----LYREFFED---------YSMVPVALTGALGDLQENGGFSGLNEAILNWG 175 Query: 268 LMVARRQGN 276 + + Sbjct: 176 VERGIIEVR 184 >gi|30143058|gb|AAP15445.1| unknown [Staphylococcus aureus subsp. aureus] Length = 111 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPG 381 ++D +E LA +++ N+ R+ + + + E+A A T+ +++ + WH G Sbjct: 1 MTDVEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKKGDL--FLLLAKENWHEG 58 Query: 382 IVGLLAARLKEKFGRPSFAIS-FEEDGKGIGSGRSIEGFDIGKMVSF 427 ++G++A+++ E F P+ ++ E GS RSI+ + +++S Sbjct: 59 VLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSMFEILSA 105 >gi|88603751|ref|YP_503929.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1] gi|88189213|gb|ABD42210.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1] Length = 408 Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 35/198 (17%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 + AA+ + + + I +D DG A+ ++M L + + I R+ + P Sbjct: 3 IETAAKDLAYELSRQSSVEILCHHDADGIAAGSIMAMALYRAGIPFRLRITHRLSEDNIP 62 Query: 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 ++ D G+ + +VIDHH E Sbjct: 63 KTRP-----------LLLCDLGAG-------LAGLPEETMVIDHHLPFFEGPHHV----N 100 Query: 198 NRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 R D + G LCAAG +LV + L L L + D L Sbjct: 101 PRYDGIDGDTDLCAAGTAYLVANALGDN-------------RDLAGLTLLGVIGDGQTLT 147 Query: 258 GLNRAYVVKGLMVARRQG 275 G N+ + L Sbjct: 148 GKNQDIYLDALGNGIISK 165 >gi|20093597|ref|NP_613444.1| RecJ-like exonuclease [Methanopyrus kandleri AV19] gi|19886456|gb|AAM01374.1| Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [Methanopyrus kandleri AV19] Length = 752 Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 19/132 (14%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRF----LSHCSVN--ANMYI 127 + + A+ I +A+ ++I D DG + + L + + A + Sbjct: 347 LWPRMREVAKEIKRAVLEGRPVLIRHHADADGISGGVALEEAILPILRENNPDPEAEYHF 406 Query: 128 PDRI----------VDGYGPNPSLMEKFIN-EGAQLIITVDCGSTSYD--ALQYATNQGI 174 R N +L + L++ +D G T D A++ G+ Sbjct: 407 YKRFPNKAPIYTLEDASRDLNHALEDVHRYGHQVPLLVLLDIGCTEEDVPAIEEMKAYGV 466 Query: 175 DVIVIDHHQVKS 186 DV+VIDHH Sbjct: 467 DVLVIDHHYPGE 478 >gi|327401698|ref|YP_004342537.1| phosphoesterase RecJ domain-containing protein [Archaeoglobus veneficus SNP6] gi|327317206|gb|AEA47822.1| phosphoesterase RecJ domain protein [Archaeoglobus veneficus SNP6] Length = 414 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 74/216 (34%), Gaps = 13/216 (6%) Query: 71 DPLILTD----CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 D + D + I + Y+ E +I D DG S A++ + ++ N+ Sbjct: 4 DGFLNHDFIKKMTQMGEMIKE--YSGEHAVIVHHNDADGICSAAILSKLCELLDLSVNLI 61 Query: 127 IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 I + + +++I D + + + + V +IDHH KS Sbjct: 62 C---IEKVHSSIVETI--HNRYEGEVVIYTDLAGLAAEMIDKVNDGRCTVWIIDHHPAKS 116 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 E + +P +SG + A+ + +L+ I+ ++ + + + D Sbjct: 117 VESETVFVFDPELFG-VSGDTFVSASTLNYLLSACIHEKMKSYAYLAVIGSVGDYHDRSG 175 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKAL 282 D ++ + + ++ ++ Sbjct: 176 GVLGFDRF-VLDEAVDLGQAKIKIEGQKERYYIQFF 210 >gi|188997397|ref|YP_001931648.1| phosphoesterase RecJ domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932464|gb|ACD67094.1| phosphoesterase RecJ domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 330 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 + + I + + I++F D DG S+ + FL N M + D Sbjct: 1 MEMSIPIIERLKREEKDILLFTHENPDCDGIGSMIALYLFLKKLGKNVTMAMKDDFPFVC 60 Query: 136 GPNP---SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY 192 P + + IN + I VD S ++ + +VI IDHH E Sbjct: 61 DFMPEVNEIKKLPINHKFSVAILVDASSKKRAGVEICAD---EVIRIDHHIGGEFESIYD 117 Query: 193 ALVNP 197 + + Sbjct: 118 IVDDF 122 >gi|218672101|ref|ZP_03521770.1| single-stranded-DNA-specific exonuclease RecJ [Rhizobium etli GR56] Length = 47 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 23/36 (63%) Query: 4 QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAI 39 +AFLGVE S RWV+ L Q G NRALA++Q Sbjct: 10 RAFLGVEKSALDNRWVARLDQAGQNRALAMSQFTGC 45 >gi|126179628|ref|YP_001047593.1| phosphoesterase, DHHA1 [Methanoculleus marisnigri JR1] gi|125862422|gb|ABN57611.1| phosphoesterase, DHHA1 [Methanoculleus marisnigri JR1] Length = 465 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY 135 D +AA I A + + I D DG ++ A++ + L+ S+ ++ Sbjct: 5 NDVRRAADLICDA----DSVTIVSHIDADGISTEAILAQALTRESMPVESVFVRQLE--- 57 Query: 136 GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALV 195 + + + + L + D G+ + L+ +V+++DHH V AY V Sbjct: 58 ----PMAMRHVPKDGSLKLFADLGAGQQNLLEEHGLSADEVLILDHH-VGQPCGTAYPQV 112 Query: 196 NPNRLD 201 N Sbjct: 113 NSLDHG 118 >gi|145498431|ref|XP_001435203.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402333|emb|CAK67806.1| unnamed protein product [Paramecium tetraurelia] Length = 3076 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 31/359 (8%), Positives = 70/359 (19%), Gaps = 24/359 (6%) Query: 131 IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP 190 DGY + + Q IT + + L Y N + + Sbjct: 1375 CQDGYYEANLSQCQICHISCQTCITSSNNCLTCETLLYYRNFNNNQCICQ-----DGYYD 1429 Query: 191 AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 + D I ++ N+ LV Sbjct: 1430 IGISMCQKCNDVCKTCQVTAYKCYSCYQSEHIRTLV--SNQCICQTGYYDNGTLVCQKCS 1487 Query: 251 CDVVPLIGLNRAYVVKGLMVARRQ-----GNPGLKALIERVNISSPITAENLGYMIGPSI 305 + + G + R P + N + S Sbjct: 1488 NECLTCSGSENHCTSCDINQKRIDQSVIYRCPCMTGFYSDENKICQKCHIKCTSCLNQSD 1547 Query: 306 NAGGRIGESNLGSRLLISDDSQELEML----AMKLDVLNQNRRLMESAMLEQAEAKVLTQ 361 + + L + + ++ NQ + + + Sbjct: 1548 HCLSCKLVTGSNRYTLSQNCDCKAGYFDDGIQLQCQQCNQRCKTCVNTSTNCLTCFDSLR 1607 Query: 362 CDDIQQASVIVVEGD--RWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEG- 418 + + D ++ + + + + G G Sbjct: 1608 FNPPNCNCIDGNYEDAQKYCQPCNHECSTCINKPENCLTCKPGRMTAQCVCQDGYFEAGV 1667 Query: 419 -----FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALI 472 +I L G + G + F L + + ++ Sbjct: 1668 QECLKCNIQCNTCNQTASNCLSCKGDRINSPGCSCPLGYFDDLINQNCQLCDSLCQTCD 1726 >gi|307638063|gb|ADN80513.1| hypothetical protein hp908_1392 [Helicobacter pylori 908] gi|325996666|gb|ADZ52071.1| hypothetical protein hp2018_13511 [Helicobacter pylori 2018] gi|325998256|gb|ADZ50464.1| hypothetical protein hp2017_13471 [Helicobacter pylori 2017] Length = 188 Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLME 143 + +A + I+ + D D DG + +++M + + + P R GYG + Sbjct: 19 LEEAKQHH-PIIFYTDNDCDGMLAGSVLMSMCYRLGIKDFFFFSPLRNAHGYGFTDLALN 77 Query: 144 KFINEGAQL 152 +++ Sbjct: 78 DLLSQPCIF 86 >gi|15644343|ref|NP_229395.1| hypothetical protein TM1595 [Thermotoga maritima MSB8] gi|281412632|ref|YP_003346711.1| phosphoesterase RecJ domain protein [Thermotoga naphthophila RKU-10] gi|4982166|gb|AAD36662.1|AE001804_6 conserved hypothetical protein [Thermotoga maritima MSB8] gi|281373735|gb|ADA67297.1| phosphoesterase RecJ domain protein [Thermotoga naphthophila RKU-10] Length = 333 Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 12/123 (9%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCS----VNANMYIPDRI 131 D+ IV+ + ++I++ G D D +SV + L + IP Sbjct: 1 MDE----IVKVLSQHDRILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVF 56 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 P +E+ N +L++ VD S + +VIDHH + Sbjct: 57 EKF--PYIDKIEENPNFDPELLVVVDASSPDRIGKFQDLLDKVPSVVIDHHSTNTNFGNW 114 Query: 192 YAL 194 + Sbjct: 115 NWV 117 >gi|15791135|ref|NP_280959.1| hypothetical protein VNG2333C [Halobacterium sp. NRC-1] gi|169236890|ref|YP_001690090.1| single-stranded-DNA-specific exonuclease [Halobacterium salinarum R1] gi|10581745|gb|AAG20439.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727956|emb|CAP14744.1| single-stranded-DNA-specific exonuclease [Halobacterium salinarum R1] Length = 475 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 7/128 (5%) Query: 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 +++ D DG S + L IP +V + + ++ Sbjct: 28 VLVASHIDADGLTSAGIASTALER------AAIPHEVVFSKQLDDEEIADIAGANHGTVL 81 Query: 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 D GS DA+ G VI H +E +NP + G L AG Sbjct: 82 FTDFGSGQLDAITAHERAGEFTPVIADHHQPAENAATDYHLNPLLEG-VDGGTELSGAGA 140 Query: 215 VFLVLVLI 222 +++ + Sbjct: 141 TYVLARAL 148 >gi|124485558|ref|YP_001030174.1| hypothetical protein Mlab_0735 [Methanocorpusculum labreanum Z] gi|124363099|gb|ABN06907.1| phosphoesterase, RecJ domain protein [Methanocorpusculum labreanum Z] Length = 612 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 28/155 (18%) Query: 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-----VALMMRFLSHCSVNANMYIP 128 + + K A+ + +A+ + I+I D DG + A+ +F+ + + Sbjct: 221 LWPEMRKLAKIVRRAVLTQQPIIIRHHADADGICAAVSVETAV-TQFIRDNGGDPD---Q 276 Query: 129 DRIVDGYGPNPSLMEK----------------FINEGAQLIITVDCGSTSYDA--LQYAT 170 D + P+ + + + LI+ +D GST D + Sbjct: 277 DNFLLRRSPSKAPFYEIEDVTRDLDMMLKDNVRFGQKLPLILLMDNGSTEEDMPSYKMTE 336 Query: 171 NQGIDVIVIDHHQVKSEEIPAYA-LVNPNRLDDLS 204 G+DVIV DHH VNP + Sbjct: 337 VYGLDVIVADHHHPDDTIDKYLLSHVNPYHVGGDF 371 >gi|154151128|ref|YP_001404746.1| phosphoesterase domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999680|gb|ABS56103.1| phosphoesterase, RecJ domain protein [Methanoregula boonei 6A8] Length = 611 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 20/152 (13%) Query: 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS-VAL---MMRFLSHCSVNA--NMY 126 ++ + K A+ I +A++ ++ I++ D DG S VA+ ++ + + + Y Sbjct: 220 SLMPEMRKVAKIIRRAVFTAQPIILRHHADADGICSAVAIEQAVVSLIRESGGDFDADYY 279 Query: 127 IPDR---IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDA--LQYATNQG 173 + R Y + + L+I D GST D + A+ Sbjct: 280 LFKRAPSKAPFYEIEDITRDLDFALKDHARFGQKMPLVILTDNGSTEEDEPSYKIASVYE 339 Query: 174 IDVIVIDHHQVKSEEIPAYA-LVNPNRLDDLS 204 I +VIDHH + VNP + Sbjct: 340 IPFVVIDHHHPDATIDKYLVGHVNPYHVGGDF 371 >gi|95929624|ref|ZP_01312366.1| phosphoesterase, RecJ-like [Desulfuromonas acetoxidans DSM 684] gi|95134321|gb|EAT15978.1| phosphoesterase, RecJ-like [Desulfuromonas acetoxidans DSM 684] Length = 323 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 7/144 (4%) Query: 86 VQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMY----IPDRIVDGYGPNP 139 V A+ + ++ +I D D +S + L + Y +PD+ G + Sbjct: 11 VDALASGQRFLIAAHEGPDGDAMSSTLALTNALREMGKDVVAYNVDGVPDKFCFLPGADT 70 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 + E +E +I+ +D G L +I IDHH + Y + + Sbjct: 71 VVSEIAASEHFDVIVILDAGELRRARLDARNLC-TTLINIDHHPFSEDFGDIYLVDDKCS 129 Query: 200 LDDLSGQGHLCAAGVVFLVLVLIY 223 L A V + Sbjct: 130 ATAAMLYRVLMACDYTISTEVALC 153 >gi|256810870|ref|YP_003128239.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens AG86] gi|256794070|gb|ACV24739.1| phosphoesterase RecJ domain protein [Methanocaldococcus fervens AG86] Length = 431 Score = 41.7 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 63/453 (13%), Positives = 136/453 (30%), Gaps = 78/453 (17%) Query: 73 LILTDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 L + +K + I + I N I + +D DG +S ++ + L + ++ + + Sbjct: 2 EKLNEIEKVTKAIKEKILNHTGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV---V 58 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPA 191 + K L I D GS + + I + S Sbjct: 59 EHLSKEVIEKLAKENEVNRPLFIFADMGSGQIEDIIKHDFNAIILDHHPPVVKDSFVNEN 118 Query: 192 YALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC 251 +NP+ + A+GV +LV F L L + Sbjct: 119 IIQLNPHIFGIDGA-REITASGVCYLV--------------AREFGYYDLSVLAIAGIIG 163 Query: 252 DVV--PLIGLNRAYVVKGLMVARRQ------GNPGLKALIERVNISSPITAENLGYMI-- 301 D+ PL+GLN+ V + + N + + + + L + Sbjct: 164 DMQYNPLLGLNKFIVNEAREYRYIKIISDIIYNIYNVEIYKAIAYCTKPYIPELASEVKA 223 Query: 302 --------------------GPSINAGGRIGESN----LGSRLLISDDSQELEMLAMKLD 337 + + + R LI ++ +L+ L+ Sbjct: 224 FKFLKEIGIDPNKKELDEADRKKLLSAIIFKYPKIENLIIDRYLIEHKVKDAFLLSEMLN 283 Query: 338 VL---------------NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 + + + + +L + + ++ + +++ + + G+ Sbjct: 284 AVGRNGLFAVGIGICLEDDECIKIGNEVLWEYKKNLVNELKNVKLKKLNNIYYFEGKKGM 343 Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-----GFDIGKMVSFAVEEGILVKG 437 +G++A+ L E E S R + G ++ ++ A E G G Sbjct: 344 IGVIASILVE---DKPVIGYHIEGDIAKFSARGNKELVNRGLNLSVAMAVAKEFGG--NG 398 Query: 438 GGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPA 470 GGH +A+G V + + + Sbjct: 399 GGHNVASGAVVPKDKVKEFLKRVDEIIGEQLSK 431 >gi|156937507|ref|YP_001435303.1| hypothetical protein Igni_0714 [Ignicoccus hospitalis KIN4/I] gi|156566491|gb|ABU81896.1| hypothetical protein Igni_0714 [Ignicoccus hospitalis KIN4/I] Length = 128 Score = 41.7 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 32/128 (25%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSI--------DYAKDFLNPSIRL 67 ++WV L +E + I K R++ + + + Sbjct: 13 YKWVELPREEALKLLEIIEGKLGKSP--------RDLQETMRYLRHFEEFYRDMQKRFKD 64 Query: 68 LMPDPLILTDCDKA---ARRIVQAIYNSEKIM-IFGDYD----VDGAASVALMMRFLSHC 119 + P L D + +I +E+I I +D VD L+ L Sbjct: 65 FIAPPHSLDDMIRGIVVVDKIALKKEGNEEIATIV--FDRRISVD------LLKEALKEL 116 Query: 120 SVNANMYI 127 + + Sbjct: 117 GYEVEVEV 124 >gi|84489981|ref|YP_448213.1| hypothetical protein Msp_1189 [Methanosphaera stadtmanae DSM 3091] gi|84373300|gb|ABC57570.1| RecJ [Methanosphaera stadtmanae DSM 3091] Length = 477 Score = 41.7 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 19/111 (17%) Query: 76 TDCD----KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI 131 D KA +I+ A E I +F D DG + +++ ++ ++ D Sbjct: 16 KHMDLLFSKAKDKILDA----EDITVFTHTDCDGITAGSILSSIFDKLEIDHSVNFVD-- 69 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 + + L I D G+ N VIV+DHH Sbjct: 70 --------INEVENLTTDTDLTIISDLGAGQN-VSNICDNSNKSVIVLDHH 111 >gi|11498935|ref|NP_070166.1| hypothetical protein AF1337 [Archaeoglobus fulgidus DSM 4304] gi|2649241|gb|AAB89907.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 692 Score = 41.7 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 24/187 (12%) Query: 50 RNVSIDYAKDFLNPSIRLLMPDPLILT----DCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 R + P R + + +L D K A+ + +AIY S ++I +D DG Sbjct: 287 RKRVEAEIERACEPDFRGFLIESEVLEALKEDMLKVAKELKKAIYESRPVIIRHHWDADG 346 Query: 106 AASVALMMRFLSHCSVNAN-------MYIPDRIVD--GYGPNPSLME--------KFINE 148 + + L+ + + R+ Y + + + + Sbjct: 347 TCGGVALEKALTDLVERVHSDSEAKYYLVKRRVSRAPFYELEDVVRDLDESLEDAERHGD 406 Query: 149 GAQLIITVDCGSTSYDALQYATNQ--GIDVIVIDHHQV-KSEEIPAYALVNPNRLDDLSG 205 L++ VD GS D G DVI IDHH + + VNP ++ S Sbjct: 407 KIPLVVLVDNGSGLEDVPAIRQFLLFGADVITIDHHFPDEEVDSYLLYHVNPYKVGGDSN 466 Query: 206 QGHLCAA 212 Sbjct: 467 YTSGVLC 473 >gi|284166935|ref|YP_003405214.1| phosphoesterase RecJ domain protein [Haloterrigena turkmenica DSM 5511] gi|284016590|gb|ADB62541.1| phosphoesterase RecJ domain protein [Haloterrigena turkmenica DSM 5511] Length = 500 Score = 41.3 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 10/131 (7%) Query: 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 ++++ D DG S A+ + L IP V + + + Sbjct: 24 RVLLASHIDADGLTSAAIAAQALER------AAIPFETVFEKQLDQDAIADIAATDYDTV 77 Query: 154 ITVDCGSTSYDALQYATNQG-IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 + D GS + + + G ++ DHHQ + + +D S A Sbjct: 78 LFTDFGSGQLEIIGEHEDAGAFTPVIADHHQPADRDTEFHLNPLLFGIDGASEL---SGA 134 Query: 213 GVVFLVLVLIY 223 G +++ + Sbjct: 135 GASYVLARALA 145 >gi|291279494|ref|YP_003496329.1| HAD-superfamily hydrolase [Deferribacter desulfuricans SSM1] gi|290754196|dbj|BAI80573.1| HAD-superfamily hydrolase [Deferribacter desulfuricans SSM1] Length = 308 Score = 41.3 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 529 LQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLD 588 +++ +D T I F +G + V ++ ++ G Q ++LD Sbjct: 27 IKVILMDKDGNTFNGIMFDSNKLKFDP----EKGHIVEVIANIQ--HYNGQ--PQFKILD 78 Query: 589 ASPVEGHH 596 S VEG + Sbjct: 79 MSLVEGEN 86 >gi|146165424|ref|XP_001014993.2| hypothetical protein TTHERM_00672160 [Tetrahymena thermophila] gi|146145482|gb|EAR94748.2| hypothetical protein TTHERM_00672160 [Tetrahymena thermophila SB210] Length = 580 Score = 40.9 bits (94), Expect = 0.56, Method: Composition-based stats. Identities = 28/361 (7%), Positives = 65/361 (18%), Gaps = 18/361 (4%) Query: 105 GAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG----- 159 G S L FL+ + + + G + + + + + C Sbjct: 135 GVCSTCLQGYFLNQIGICQPCTGSNCLTCGSSGSCTTCQNGFYPDSTSGSCLPCNSYGSL 194 Query: 160 STSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVL 219 S + + Q + + + ++ A + + Sbjct: 195 SQNCASCQTSNPAKCSICLPFYYADGQGRCRQVAFCDNIQPVGEVCLSCADGYYQDTNGK 254 Query: 220 VLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGL 279 + + D V I AY+ GL P Sbjct: 255 CKMCPQFGVARCSSATTIIQCTNDKALTFDKSQCVYKISHCTAYLNTGLCKTCDTSFPFN 314 Query: 280 KALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL 339 I ++ + + I Sbjct: 315 SKGTCIQTCQLAIPNCQTCVNGSDTVAVT----CTLCNAGYFIGPGGTSCISCGDLNHGG 370 Query: 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSF 399 Q + + D P + G + + Sbjct: 371 MQGCQTCVGTPFSCSLCLPGYFLDTGN-------ICKGCTPDLKGTGCQTCQSASTCQTC 423 Query: 400 AISFEEDGKGI--GSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + G + D+G M + + + Sbjct: 424 LTNTFGTGGTCNLCDASCGQCTDLGYMNCKTSCSSNMYYLDNSTICRQCNYNMPGCYQCS 483 Query: 458 D 458 + Sbjct: 484 N 484 >gi|116071440|ref|ZP_01468709.1| Exonuclease VII, large subunit [Synechococcus sp. BL107] gi|116066845|gb|EAU72602.1| Exonuclease VII, large subunit [Synechococcus sp. BL107] Length = 387 Score = 40.9 bits (94), Expect = 0.56, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N A+ +LE G P F + + V HL +T + ++ Sbjct: 10 SVGELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-VKKGHLWLTLTD-GTASISG 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L G + V G L N+W ++ LD P Sbjct: 60 VVWASKLAQLSYRPTDGDG--VTVVGKL--NFWAARASITVQALDIRPS 104 >gi|158564341|sp|Q3AH76|EX7L_SYNSC RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit Length = 387 Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + + +N A+ +LE G P F + + + HL +T S ++ Sbjct: 10 SVAELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLTD-GSASISG 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L G + V G L N+W ++ LD P Sbjct: 60 VVWASKLAQLS--YQPKDGDGVTVVGKL--NFWAARASLTVQALDIRPS 104 >gi|148240529|ref|YP_001225916.1| exonuclease VII large subunit [Synechococcus sp. WH 7803] gi|147849068|emb|CAK24619.1| Exonuclease VII large subunit [Synechococcus sp. WH 7803] Length = 383 Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N ++ +LE G P F L+ + HL +T D ++ Sbjct: 10 SVQELNASVGALLER------GF-APRFLVHGSALRPQ--IKKGHLWLTLSDGD-ASITV 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L + G + V G L N+W ++ +D P Sbjct: 60 VCWASRLKQLNFVPTEGEG--VTVVGKL--NFWSARASLAVQAIDLRPS 104 >gi|78213832|ref|YP_382611.1| exodeoxyribonuclease VII large subunit [Synechococcus sp. CC9605] gi|78198291|gb|ABB36056.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. CC9605] Length = 399 Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + + +N A+ +LE G P F + + + HL +T S ++ Sbjct: 22 SVAELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLTD-GSASISG 71 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L G + V G L N+W ++ LD P Sbjct: 72 VVWASKLAQLS--YQPKDGDGVTVVGKL--NFWAARASLTVQALDIRPS 116 >gi|11497695|ref|NP_068916.1| hypothetical protein AF0075 [Archaeoglobus fulgidus DSM 4304] gi|2650572|gb|AAB91152.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 413 Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 11/156 (7%) Query: 68 LMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 L + ++AA I Y + + D DG S AL+ + +C A + Sbjct: 8 LHQEFFEW--VERAANYIRS--YAGGGVTVVHHNDADGLCSGALLKKLCEYCGFEAELIC 63 Query: 128 PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 I Y P+++EK + +II D G + D + V++IDHH K Sbjct: 64 ---IEKVY---PAVVEKIHSSRDGMIIYTDLGGLAADMIDKINAGKSMVLIIDHHPAKDI 117 Query: 188 EIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 + +++P +SG + A+ + ++ + Sbjct: 118 DSDYVHVLDPELAG-ISGDVFVSASSLNYIFFRAVA 152 >gi|159902646|ref|YP_001549990.1| exodeoxyribonuclease VII [Prochlorococcus marinus str. MIT 9211] gi|159887822|gb|ABX08036.1| Exodeoxyribonuclease VII [Prochlorococcus marinus str. MIT 9211] Length = 382 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N A+ +L G P F + + + + HL +T ++ A Sbjct: 10 SVQELNHAIGHLLSR------GFS-PRFYL-HATVSKSQ-LKNGHLWLTLTD-GHASISA 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + G + + G L N+W +++++ P Sbjct: 60 VIWASTLKKFTYRPNDQDG--IEILGKL--NFWENRANLVVQIIEMRPS 104 >gi|148642320|ref|YP_001272833.1| RecJ-like exonuclease [Methanobrevibacter smithii ATCC 35061] gi|148551337|gb|ABQ86465.1| archaea-specific RecJ-like exonuclease [Methanobrevibacter smithii ATCC 35061] Length = 752 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 29/178 (16%) Query: 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPS--IRLLMPDPLILTDCDKAARRIVQAIYNS 92 +K + D++ L R + DFL S + L P +AA++I +AI + Sbjct: 308 KKAKLHDLIEDALNKR--AEPDDVDFLVKSDVLNRLKPK------MREAAQKIRRAILDG 359 Query: 93 EKIMIFGDYDVDGAASVALMMRFL----SHCSV--NANMYIPDR---IVDGYGPNPSLME 143 I++ D DG S M + + + +A Y R Y + + Sbjct: 360 RSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRSPSKAPFYELEDVVKD 419 Query: 144 --------KFINEGAQLIITVDCGSTSYDAL--QYATNQGIDVIVIDHHQVKSEEIPA 191 + + LI+ +D GST D + A ++V+VIDHH Sbjct: 420 LSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVVIDHHSPGDLITKE 477 >gi|150021403|ref|YP_001306757.1| phosphoesterase domain-containing protein [Thermosipho melanesiensis BI429] gi|149793924|gb|ABR31372.1| phosphoesterase, RecJ domain protein [Thermosipho melanesiensis BI429] Length = 326 Score = 40.9 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 11/120 (9%) Query: 85 IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVD----G 134 IV + ++KI++ G D D +SV + L + IP + Sbjct: 8 IVGTLNEAQKILVVGHIMPDGDDISSVLSLFLGLKSLGKQVVAAIDWKIPSYFFEIEEVK 67 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 Y N ++ + +I+ +D S VIVIDHH + + Sbjct: 68 YIKNYEEID-VYDFNPDIIVILDASSPDRVGRFSDVLNDFKVIVIDHHATNTYFGDINWV 126 >gi|116073872|ref|ZP_01471134.1| Exonuclease VII, large subunit [Synechococcus sp. RS9916] gi|116069177|gb|EAU74929.1| Exonuclease VII, large subunit [Synechococcus sp. RS9916] Length = 389 Score = 40.9 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 16/110 (14%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRV-VNLAHLQMTFESQDSETLQ 542 + +N A+ +LE G P F + + + V HL +T + ++ Sbjct: 10 SVRELNTAIGSLLER------GF-APRFL---VQATASKPQVKKGHLWITLTDGE-ASIT 58 Query: 543 AIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 A+A+ L G + V G L N+W ++VLD P Sbjct: 59 AVAWASKLKQLDYVPADGEG--VTVVGKL--NFWAARATLAVQVLDLRPS 104 >gi|78183946|ref|YP_376381.1| exonuclease VII, large subunit [Synechococcus sp. CC9902] gi|123757132|sp|Q3AZZ0|EX7L_SYNS9 RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit gi|78168240|gb|ABB25337.1| Exodeoxyribonuclease VII large subunit [Synechococcus sp. CC9902] Length = 387 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N A+ +LE G P F + + V HL +T + ++ Sbjct: 10 SVGELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-VKKGHLWLTLTD-GTASISG 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L G + V G L N+W ++ LD P Sbjct: 60 VVWASRLAQLSYRPTDGDG--VTVVGKL--NFWAARASITVQALDIRPS 104 >gi|88807160|ref|ZP_01122672.1| Exonuclease VII, large subunit [Synechococcus sp. WH 7805] gi|88788374|gb|EAR19529.1| Exonuclease VII, large subunit [Synechococcus sp. WH 7805] Length = 382 Score = 40.5 bits (93), Expect = 0.76, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + +N ++ +LE G P F L+ + HL +T + ++ Sbjct: 10 SVQELNASVGALLER------GF-APRFLVHGSALRPQ--IKKGHLWLTLSDGN-ASITV 59 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L + G + V G L N+W ++ +D P Sbjct: 60 VCWASRLQQLNFVPAEGEG--VTVVGKL--NFWATRASLAIQAIDLRPS 104 >gi|16082593|ref|NP_394590.1| single-stranded DNA-specific exonuclease [Thermoplasma acidophilum DSM 1728] Length = 446 Score = 40.5 bits (93), Expect = 0.78, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 16/156 (10%) Query: 96 MIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 + YD DG +S ++ L + R Y + I Sbjct: 28 RVIVHYDGDGTSSAIILTNMLKRLNK--------RFHLSYIKELNETGFRSLITDDTTIV 79 Query: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGH-LCAAGV 214 D GS + ++IV+DHH + +N N D H C + + Sbjct: 80 ADAGS----DQLRFVPEKKNIIVLDHHFYTKADWKG---MNINARDYGIDGTHEACGSTM 132 Query: 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATV 250 +++ +++ ++ + DL ++ + Sbjct: 133 SYMMALVMDEKNSDLFPFFMSGLIADKQDLGGISGM 168 >gi|315607829|ref|ZP_07882822.1| DHH family phosphoesterase [Prevotella buccae ATCC 33574] gi|315250298|gb|EFU30294.1| DHH family phosphoesterase [Prevotella buccae ATCC 33574] Length = 346 Score = 40.5 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVD------ 133 A + + I SE+I+I G DG A +L +L + ++ +PD + D Sbjct: 11 AATLRELIAASERIVICGHKSPDGDAIGSSLGWAAYLRSLGKSPDIVMPDAMPDFLHWLP 70 Query: 134 GYGPNPSLMEKFIN-----EGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVKS 186 ++ + A L+ +D D ++IDHH + Sbjct: 71 NSEKVVRHDKRTAEVSRMLQQADLLFCLDFNDPGRVEDMQADVVASPARKVMIDHHLDPN 130 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+ +P + +VF V+ + D + + D Sbjct: 131 FPDTALAVSHPEM---------SSTSEMVFRVVWQLGGFEGLDRQWAAPIYCGMMTDTGG 181 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + + + KG+ + N V + + + L + Sbjct: 182 FTYNSTNPEIYFIISQLLTKGIDKDKIYRNVFNNYSSWAVRLRGYMMCQKLNVFEDLHAS 241 Query: 307 AGGRIGESNLGSRLLISD 324 + D Sbjct: 242 YYAMTRTELRDFHFIRGD 259 >gi|288924809|ref|ZP_06418746.1| DHH subfamily 1 protein [Prevotella buccae D17] gi|288338596|gb|EFC76945.1| DHH subfamily 1 protein [Prevotella buccae D17] Length = 346 Score = 40.5 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVD------ 133 A + + I SE+I+I G DG A +L +L + ++ +PD + D Sbjct: 11 AATLRELIAASERIVICGHKSPDGDAIGSSLGWAAYLRSLGKSPDIVMPDAMPDFLHWLP 70 Query: 134 GYGPNPSLMEKFIN-----EGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVKS 186 ++ + A L+ +D D ++IDHH + Sbjct: 71 NSEKVVRHDKRTAEVSRMLQQADLLFCLDFNDPGRVEDMQADVVASPARKVMIDHHLDPN 130 Query: 187 EEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVA 246 A A+ +P + +VF V+ + D + + D Sbjct: 131 FPDTALAVSHPEM---------SSTSEMVFRVVWQLGGFDGLDRQWAAPIYCGMMTDTGG 181 Query: 247 LATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSIN 306 + + + KG+ + N V + + + L + Sbjct: 182 FTYNSTNPEIYFIISQLLTKGIDKDKIYRNVFNNYSSWAVRLRGYMMCQKLNVFEDLHAS 241 Query: 307 AGGRIGESNLGSRLLISD 324 + D Sbjct: 242 YYAMTRTELRDFHFIRGD 259 >gi|126178379|ref|YP_001046344.1| phosphoesterase domain-containing protein [Methanoculleus marisnigri JR1] gi|125861173|gb|ABN56362.1| phosphoesterase, RecJ domain protein [Methanoculleus marisnigri JR1] Length = 405 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 35/189 (18%) Query: 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFIN 147 + E + + +D DG A+ +++ + + I Sbjct: 13 HLLEQEFVEVLAHHDADGIAAASILCHAMFREGGRFRLRI------------------RP 54 Query: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 + + D D T+ DV+V+DHH P D Sbjct: 55 GISTADLPGDGSVLLCDFGSALTDLPGDVMVVDHHL-------------PRFEGDYHVNP 101 Query: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKG 267 HL + L D L L L + D L G NR V +G Sbjct: 102 HLAGIDGDRDISAAGAAYL----VAQRMGDNRDLAGLALLGIIGDDQALDGPNREIVNEG 157 Query: 268 LMVARRQGN 276 + Sbjct: 158 IANGFIAPR 166 >gi|220927912|ref|YP_002504821.1| phosphoesterase RecJ domain protein [Clostridium cellulolyticum H10] gi|219998240|gb|ACL74841.1| phosphoesterase RecJ domain protein [Clostridium cellulolyticum H10] Length = 320 Score = 40.1 bits (92), Expect = 0.96, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMY----IPDRI 131 +K +++AI +E I IF DG A +L + L +Y IPD Sbjct: 1 MEKG---LIKAIETAESIAIFPHTSADGDAIGSSLALALALKKTGKKVIVYMEESIPDTY 57 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCG 159 G ++ ++ L I +D G Sbjct: 58 KFLPGSELAVFISENDDIMGLNIALDTG 85 >gi|222444500|ref|ZP_03607015.1| hypothetical protein METSMIALI_00112 [Methanobrevibacter smithii DSM 2375] gi|222434065|gb|EEE41230.1| hypothetical protein METSMIALI_00112 [Methanobrevibacter smithii DSM 2375] Length = 752 Score = 40.1 bits (92), Expect = 0.99, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL----SHCSV--NANMYIPDR- 130 +AA++I +AI + I++ D DG S M + + + +A Y R Sbjct: 345 MREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRS 404 Query: 131 --IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDAL--QYATNQGIDVIV 178 Y + + + + LI+ +D GST D + A ++V+V Sbjct: 405 PSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVV 464 Query: 179 IDHHQVKSEEIPA 191 IDHH Sbjct: 465 IDHHSPGDLITKE 477 >gi|169343354|ref|ZP_02864358.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens C str. JGS1495] gi|169298440|gb|EDS80526.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens C str. JGS1495] Length = 330 Score = 40.1 bits (92), Expect = 1.00, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E+ + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEYEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|296132890|ref|YP_003640137.1| phosphoesterase RecJ domain protein [Thermincola sp. JR] gi|296031468|gb|ADG82236.1| phosphoesterase RecJ domain protein [Thermincola potens JR] Length = 326 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 8/112 (7%) Query: 85 IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 + +AI ++ I++ G D D S M FL M PD I YG P + Sbjct: 8 VAEAIRKAKHIIVCGHAMPDGDSIGSTLAMGLFLKSMDKKVTMLTPDPIPQIYGFLPLVQ 67 Query: 143 EKFINEGAQ----LIITVDCGSTSYDALQYATNQGIDVIV--IDHHQVKSEE 188 E E + +DC + A ++ IDHH Sbjct: 68 EIKPPEEFPDDADTAVILDCTDLNRVGAYLAERLKKVPVLINIDHHISNQVY 119 >gi|330509083|ref|YP_004385511.1| hypothetical protein MCON_3466 [Methanosaeta concilii GP-6] gi|328929891|gb|AEB69693.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 718 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 19/174 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAA-SVALMMRFLSHC----SVNANMYIPDR-- 130 A+ I +A+ S I++ D DG + +VA+ M L +A + R Sbjct: 321 MKAVAKEIRRAVLKSRPIVVRHHADADGISAAVAIEMAILPLIAEVSGPDAEYHNYRRAP 380 Query: 131 -IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYD--ALQYATNQGIDVIVI 179 Y + + LI+ +D GST D A++ A G++++V+ Sbjct: 381 SKAPFYELEDVTKDLTFALEDQSRHGQKMPLIVLMDNGSTEEDVPAMRQAQVYGLEMLVV 440 Query: 180 DHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP 233 DHH + + + + + N G + ++ + + P Sbjct: 441 DHH-HPHKIVDQFLVAHVNPAHAGGDFGLTTGMLATEIARMIHPEVENKIRHFP 493 >gi|255323577|ref|ZP_05364707.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae RM3277] gi|255299291|gb|EET78578.1| single-stranded-DNA-specific exonuclease RecJ [Campylobacter showae RM3277] Length = 38 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 560 SRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 G+ + + + N +RG QL V + Sbjct: 8 HAGESIDLVFSVSKNSFRGLVTPQLLVKEI 37 >gi|254431781|ref|ZP_05045484.1| exodeoxyribonuclease VII, large subunit [Cyanobium sp. PCC 7001] gi|197626234|gb|EDY38793.1| exodeoxyribonuclease VII, large subunit [Cyanobium sp. PCC 7001] Length = 407 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + S++N AL ++E G P F + + + + HL MT + ++ A Sbjct: 28 SVSSLNAALGSLMER------GF-APRFLL-DATVSRPQ-LKKGHLWMTLVDEQ-ASISA 77 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L + + G + V G L N+W ++VLD P Sbjct: 78 VVWASQRQKLS--MEPAEGDGVVVVGKL--NFWAARASLCVQVLDLRPS 122 >gi|283852150|ref|ZP_06369424.1| biotin and thiamin synthesis associated [Desulfovibrio sp. FW1012B] gi|283572540|gb|EFC20526.1| biotin and thiamin synthesis associated [Desulfovibrio sp. FW1012B] Length = 478 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Query: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 + I+A+ L + ++ + L DP +L AARR+ +AIY ++I++F Sbjct: 35 VSGIIAKALEYKGLTAEEVAVLLEVE------DPALLEAMYAAARRVKEAIY-GKRIVLF 87 Query: 99 G 99 Sbjct: 88 A 88 >gi|119944389|ref|YP_942069.1| KpsF/GutQ family protein [Psychromonas ingrahamii 37] gi|119862993|gb|ABM02470.1| KpsF/GutQ family protein [Psychromonas ingrahamii 37] Length = 319 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 506 NPNPVFAFPNHKLQSIR-VVNLAHLQMTFESQDSETLQAI 544 N +P F PN +L ++ H++ S+D + L I Sbjct: 275 NSSPCFISPNARLTEAEELMREKHIKWLVVSEDGKKLDGI 314 >gi|304314917|ref|YP_003850064.1| archaea-specific RecJ-like exonuclease [Methanothermobacter marburgensis str. Marburg] gi|302588376|gb|ADL58751.1| predicted archaea-specific RecJ-like exonuclease [Methanothermobacter marburgensis str. Marburg] Length = 725 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 23/161 (14%) Query: 49 NRNVSIDYAKDFLNPSIRLLMPDPLIL----TDCDKAARRIVQAIYNSEKIMIFGDYDVD 104 R + + P + L+ + L +AA+ I +AIY+ I++ D D Sbjct: 296 ARRLIDEAIDRRAEPKRKDLLIESETLEKLRPKLIEAAKAIRRAIYDGRSILVRHHADAD 355 Query: 105 GAAS-VAL---MMRFLSHCSV--NANMYIPDR---IVDGYGPNPSLME--------KFIN 147 G + VA+ ++ L + +A + R Y + + + Sbjct: 356 GICAGVAIEKAVVPLLRELNPSTDAEWHYFKRAPSKAPFYELEDVVKDLSYALEDLERHG 415 Query: 148 EGAQLIITVDCGSTSYDALQYATNQ--GIDVIVIDHHQVKS 186 + L++ +D GST D L + I+++V+DHH Sbjct: 416 QKLPLLVLLDNGSTEEDILALMKAKIYDIEIVVVDHHYPGE 456 >gi|309799909|ref|ZP_07694113.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] gi|308116436|gb|EFO53908.1| single-stranded DNA-specific exonuclease, 5'-3' [Streptococcus infantis SK1302] Length = 53 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 16 FRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSID 55 + W E I +K + VAR+L R + + Sbjct: 9 YNWQFAPQVED-ADFTKIAKKAGLGPEVARLLFERGIKDE 47 >gi|89890862|ref|ZP_01202371.1| phosphoesterase, DHH family [Flavobacteria bacterium BBFL7] gi|89517007|gb|EAS19665.1| phosphoesterase, DHH family [Flavobacteria bacterium BBFL7] Length = 341 Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 10/153 (6%) Query: 78 CDKA-ARRIVQAIYNSEKIMIFGDYDVDG--AASVALMMRFLSHCSVNANMYIPDRIVDG 134 + A + + + +KI+I + DG S + +L + + P+ D Sbjct: 1 MNTAQIQELKNHLSTPQKIVIVPHRNPDGDAIGSTTALYGYLKQLGHHCTIISPNDYPDF 60 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 P E + E + I D D + + + + Sbjct: 61 LKWMPFTDEIMVYEKQKTI--ADSLIQDADFIFILDQNAFHRAGDMETILTATNTTYVMI 118 Query: 195 VNPNRLDDLSGQGH-----LCAAGVVFLVLVLI 222 + + DD + + +++ + ++ Sbjct: 119 DHHQQPDDFATYMYSDTSMSSTCEMIYHFIDMM 151 >gi|307297767|ref|ZP_07577573.1| phosphoesterase RecJ domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306917027|gb|EFN47409.1| phosphoesterase RecJ domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 328 Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 7/124 (5%) Query: 78 CDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRI 131 + IV I + I++ G D D +SV + L + IP Sbjct: 1 MIRKITSIVSCIQKANDILVVGHIMPDGDCISSVVSLSMGLEKFGKKVTPAIDWKIPANF 60 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCGSTSY-DALQYATNQGIDVIVIDHHQVKSEEIP 190 + LII VD S + +GI +VIDHH + Sbjct: 61 TVFPWIDRIKDFSNDVVEPNLIIIVDASSPDRIGRFEQLLRKGIPSVVIDHHATNTYFAD 120 Query: 191 AYAL 194 + Sbjct: 121 DCWV 124 >gi|254166918|ref|ZP_04873772.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei T469] gi|289596529|ref|YP_003483225.1| metallophosphoesterase [Aciduliprofundum boonei T469] gi|197624528|gb|EDY37089.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei T469] gi|289534316|gb|ADD08663.1| metallophosphoesterase [Aciduliprofundum boonei T469] Length = 423 Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Query: 67 LLMPDPLILTDCD---KAARRIVQAIYNSEKI-MIFGDYDVDGAASVALM 112 L +P + D + +A + A+ +I I+G +D A S AL+ Sbjct: 48 DLFHNP--IPDMEIVRRAVEILKNAVDRGIRIYAIYGSHDF-SAGSTALL 94 >gi|260435825|ref|ZP_05789795.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 8109] gi|260413699|gb|EEX06995.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 8109] Length = 387 Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 16/110 (14%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + + +N A+ +LE G P F + + + HL +T + Sbjct: 10 SVAELNTAIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWLTLTDGSASISSV 60 Query: 544 IAFRVYGTPLGEFLMQSR-GKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L + Q + G + V G L N+W ++ LD P Sbjct: 61 VW----ASKLAQLSYQPKDGDGVTVVGKL--NFWAARASLTVQALDIRPS 104 >gi|124027462|ref|YP_001012782.1| DHH family phosphoesterase [Hyperthermus butylicus DSM 5456] gi|123978156|gb|ABM80437.1| predicted phosphoesterase, DHH family [Hyperthermus butylicus DSM 5456] Length = 355 Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 10/130 (7%) Query: 79 DKAARRIVQAIYNSEKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGY- 135 +KA + A I++ G D D A+ ++ L ++A + +P+ + Sbjct: 19 EKAEELLELAEDAGTPIVVTGHKNADPDALAAAYVIRNILRSRGLDARLVLPEGLSQPSK 78 Query: 136 -------GPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 G P+ +E E + L + VD S +D +VIDHH+ Sbjct: 79 RVAREILGVEPADVEDEPPEESALAVVVDTASPEQLGRLAEFVLQVDFVVIDHHESNRLA 138 Query: 189 IPAYALVNPN 198 A + Sbjct: 139 EKAALAIVDT 148 >gi|312137507|ref|YP_004004844.1| phosphoesterase recj domain protein [Methanothermus fervidus DSM 2088] gi|311225226|gb|ADP78082.1| phosphoesterase RecJ domain protein [Methanothermus fervidus DSM 2088] Length = 455 Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 16/37 (43%) Query: 86 VQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 + I +E + I+ D DG + A++ + + Sbjct: 13 KKVIEEAENVNIYTHIDCDGICAGAILSYLMEELGKD 49 >gi|207111474|ref|ZP_03245636.1| single-stranded-DNA specific exonuclease [Helicobacter pylori HPKX_438_CA4C1] Length = 47 Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query: 111 LMMRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 +M +F + + IP+R +DGYG + +EK A LIITVD G Sbjct: 1 IMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEK---HHAPLIITVDNG 47 >gi|66392184|ref|NP_001018150.1| DNA (cytosine-5)-methyltransferase 3A [Danio rerio] gi|62433265|dbj|BAD95480.1| DNA methyltransferase [Danio rerio] Length = 731 Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 23/226 (10%) Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149 N + I + + DG + L++ L + Y+ + + + + Sbjct: 446 ENRKPIRVLSLF--DGI-ATGLLV--LRELGIQVERYVASEVCEDSITVGIVRHQGRIMY 500 Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209 L Q + + ++VNP R + Sbjct: 501 ----------VGDVRQLTRKNIQEWGPFDL---VIGGSPCNDLSIVNPARKG-----LYE 542 Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 + F L++ ++ F L + + ++ D+ + N + + Sbjct: 543 GTGRLFFEFYRLLHEARPKEGDTRPFFWLFENVVAMGVSDKRDISRFLECNPVMIDAKEV 602 Query: 270 VARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESN 315 A + L S + + L + G+ Sbjct: 603 SAAHRARYFWGNLPGMNRPMSAMCTDKLDLQDCLEHGRTAKFGKVR 648 >gi|257064368|ref|YP_003144040.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit [Slackia heliotrinireducens DSM 20476] gi|256792021|gb|ACV22691.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit [Slackia heliotrinireducens DSM 20476] Length = 327 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 34/196 (17%) Query: 371 IVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE 430 + ++ +V + L + F + A + E+ G G G D + + ++ Sbjct: 1 MDFTSNKRPDDMVRITTPELADAFIEEAVAYTREQVGDGKVLLALSGGVDSSVVAALLIK 60 Query: 431 EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNI 490 A+ L VN G + + + + + +D Sbjct: 61 ----------AIGKQLVCVHVNHGLMRKGESEQVIEVFQNQMDANLIYVDA-------TD 103 Query: 491 ALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYG 550 +D+L G +P ++ +++ +++ L I F G Sbjct: 104 RFLDLLA-----GQADPE----------TKRHIIGEEFIKVF--DEEAAKLDGIGFLGQG 146 Query: 551 TPLGEFLMQSRGKRMH 566 T + L G + H Sbjct: 147 TIYPDILESEAGVKAH 162 >gi|261350952|ref|ZP_05976369.1| ribosomal protein, member of s1p family [Methanobrevibacter smithii DSM 2374] gi|288860292|gb|EFC92590.1| ribosomal protein, member of s1p family [Methanobrevibacter smithii DSM 2374] Length = 752 Score = 39.3 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFL----SHCSV--NANMYIPDR- 130 +AA++I +AI + I++ D DG S M + + + +A Y R Sbjct: 345 MREAAQKIRRAILDGRSILLRHHNDADGICSGVAMEKAIVPLVEQVNPSNDAQYYYFKRS 404 Query: 131 --IVDGYGPNPSLME--------KFINEGAQLIITVDCGSTSYDAL--QYATNQGIDVIV 178 Y + + + + LI+ +D GST D + A ++V+V Sbjct: 405 PSKAPFYELEDVVKDLSFALEDKERHGQKLPLIVLLDNGSTEEDIVALMQAKIYDVEVVV 464 Query: 179 IDHHQVKSEEIPA 191 IDHH Sbjct: 465 IDHHFPGDLITKE 477 >gi|289643642|ref|ZP_06475755.1| phosphoesterase RecJ domain protein [Frankia symbiont of Datisca glomerata] gi|289506533|gb|EFD27519.1| phosphoesterase RecJ domain protein [Frankia symbiont of Datisca glomerata] Length = 363 Score = 39.0 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAA-SVAL-MMRFLSHCSVNAN-------MYIPD 129 ++A I+ A+ E I++ D DG + A+ + L A+ +P Sbjct: 38 NRAVEAILSAVQGGESILLVAHVDPDGDSLGSAIALGLALRTLGSRASVSFDSDPFVVPR 97 Query: 130 RIVDGYGPNPSLMEKFINEGAQLIITVDCG-STSYDALQYATNQGIDVIVIDHHQVKSEE 188 + G + + + L++T+D G AL + ++VIDHH + Sbjct: 98 SLTFLPGQDLLVPPALVPATPDLVVTLDAGSLGRLGALGRVATRARRMVVIDHHASNTRF 157 Query: 189 IPAYAL 194 + Sbjct: 158 GDINVI 163 >gi|297192947|ref|ZP_06910345.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722649|gb|EDY66557.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 252 Score = 39.0 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 19/105 (18%) Query: 11 CSISGFRWVSLLGQEGINRALAIT--QKHAIP-DIVARVLVNRNVSIDYA--KDFLNPSI 65 S SG R ++R I ++ P + VA +L A + L Sbjct: 33 RSGSGHR---RYDDADLDRLQQILFYRELGFPLEEVAALL-----DDPDADPRAHLRRQH 84 Query: 66 RLLMPDPLILTDCDKAARRIVQAIYNS------EKIMIFGDYDVD 104 LL L + A R ++A EK +FGD+D D Sbjct: 85 ELLSARIARLKEMAAAVERAMEAKKMGINLTPEEKFEVFGDFDPD 129 >gi|110799108|ref|YP_694496.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens ATCC 13124] gi|110673755|gb|ABG82742.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens ATCC 13124] Length = 323 Score = 39.0 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 21 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 75 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 76 --VNSWQG--TLQLKVEHASKVT 94 >gi|18309005|ref|NP_560939.1| CMP-binding factor [Clostridium perfringens str. 13] gi|18143680|dbj|BAB79729.1| probable CMP-binding factor [Clostridium perfringens str. 13] Length = 330 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|182625357|ref|ZP_02953130.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens D str. JGS1721] gi|177909354|gb|EDT71806.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens D str. JGS1721] Length = 330 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|168214035|ref|ZP_02639660.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens CPE str. F4969] gi|170714465|gb|EDT26647.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens CPE str. F4969] Length = 330 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|110803547|ref|YP_697372.1| HD domain-containing protein [Clostridium perfringens SM101] gi|110684048|gb|ABG87418.1| HD domain protein [Clostridium perfringens SM101] Length = 323 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 21 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 75 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 76 --VNSWQG--TLQLKVEHASKVT 94 >gi|168217735|ref|ZP_02643360.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens NCTC 8239] gi|182380178|gb|EDT77657.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens NCTC 8239] Length = 330 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|168210478|ref|ZP_02636103.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens B str. ATCC 3626] gi|170711407|gb|EDT23589.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens B str. ATCC 3626] Length = 330 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|168206212|ref|ZP_02632217.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens E str. JGS1987] gi|170662305|gb|EDT14988.1| 3'-5' exoribonuclease YhaM [Clostridium perfringens E str. JGS1987] Length = 330 Score = 39.0 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 511 FAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGH 570 F + L++ +L + + + L + E + G Sbjct: 28 FLLKSVTLKTTNSGGKKYLDLVLSDKTGDILGKVW-----EIKPEHEELKSNTVFKIRGT 82 Query: 571 LCVNYWRGSKRCQLRVLDASPVE 593 VN W+G QL+V AS V Sbjct: 83 --VNSWQG--TLQLKVEHASKVT 101 >gi|327400231|ref|YP_004341070.1| phosphoesterase RecJ domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315739|gb|AEA46355.1| phosphoesterase RecJ domain protein [Archaeoglobus veneficus SNP6] Length = 434 Score = 38.6 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 20/122 (16%) Query: 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN- 138 KA I SE I I+ YD DG + R+ + Sbjct: 11 KAVEL----IKESEFIHIYTHYDADGI------------SAAAVLASALHRLDKPFQVTF 54 Query: 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPN 198 + + ++ A LII D GS D + +V+++DHH P +LV+ N Sbjct: 55 LKGLNQGVDCDADLIILADMGSGYPDIVSEI---DANVVIVDHHFPTGRIEPKRSLVHVN 111 Query: 199 RL 200 Sbjct: 112 PH 113 >gi|87301423|ref|ZP_01084264.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 5701] gi|87284391|gb|EAQ76344.1| exodeoxyribonuclease VII, large subunit [Synechococcus sp. WH 5701] Length = 400 Score = 38.6 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%) Query: 484 NASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQA 543 + S +N ++ +LE G P F + + + HL MT + + ++ A Sbjct: 25 SVSDLNRSIGSLLER------GF-APRFLLE-ATVSRPQ-LKKGHLWMTLLDE-TASISA 74 Query: 544 IAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 + + L + G + V G L N+W ++ LD P Sbjct: 75 VVWASALPRLS--FTPADGDGVIVVGKL--NFWGARASLCVQALDVRPS 119 >gi|326204068|ref|ZP_08193929.1| phosphoesterase RecJ domain protein [Clostridium papyrosolvens DSM 2782] gi|325985835|gb|EGD46670.1| phosphoesterase RecJ domain protein [Clostridium papyrosolvens DSM 2782] Length = 320 Score = 38.6 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 9/88 (10%) Query: 78 CDKAARRIVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMY----IPDRI 131 DK +V+A+ +E + IF DG A +L + L +Y IPD Sbjct: 1 MDK---ELVKAVEGAESVAIFPHISADGDAIGSSLALALALKKTGKKVIVYMEENIPDTF 57 Query: 132 VDGYGPNPSLMEKFINEGAQLIITVDCG 159 G + E L I +D G Sbjct: 58 KFLPGIELAGFISEDQEVMDLNIALDTG 85 >gi|124088291|ref|XP_001347040.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|145474489|ref|XP_001423267.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057429|emb|CAH03413.1| hypothetical protein, transmembrane helices [Paramecium tetraurelia] gi|124390327|emb|CAK55869.1| unnamed protein product [Paramecium tetraurelia] Length = 2954 Score = 38.6 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 23/259 (8%), Positives = 54/259 (20%), Gaps = 17/259 (6%) Query: 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL--- 217 A + ++Q N D + + + Sbjct: 628 CYDCGQYCAKCIQSKCLYCINNQGYFISFDKLNCAICNIKDCQYCFQYYQSDDKYYTTLD 687 Query: 218 ---VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQ 274 + I + L + N ++ + N G++ Sbjct: 688 YEPFMENIQQELIKIGCAQCNQNMY-------FNFQTNQCEEQLNNDVKCSFGIITKDFG 740 Query: 275 GNPGLKALIERVNISS--PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEML 332 + +K+L V I +T I IN G S + + + Sbjct: 741 KSICIKSLTPLVGIQQTECLTISFCEQCILNYINTDGF--CIKCSDGYYSSITTGQCKQC 798 Query: 333 AMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKE 392 + Q + E +A + + + + + + Sbjct: 799 PLTCKTCQQQNKNHEDFWKWDIKAFYKYFVNSNEDHYFEQYGLNFNTKNFEIVCTSCFSD 858 Query: 393 KFGRPSFAISFEEDGKGIG 411 F + Sbjct: 859 SFLYQNECFKNCGQDCSNC 877 >gi|83942803|ref|ZP_00955264.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp. EE-36] gi|83846896|gb|EAP84772.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp. EE-36] Length = 511 Score = 38.6 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 H+ + + DS + + + + L + M V + + G + Q+ + Sbjct: 51 GHIYLDLKD-DSSVISGVIW----KGVSARLETQPEEGMEVIATGRITTFGGQSKYQIVI 105 Query: 587 LDASPV 592 D P Sbjct: 106 EDIKPA 111 >gi|83955626|ref|ZP_00964206.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp. NAS-14.1] gi|83839920|gb|EAP79096.1| exodeoxyribonuclease VII, large subunit [Sulfitobacter sp. NAS-14.1] Length = 515 Score = 38.6 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 527 AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRV 586 H+ + + DS + + + + L + M V + + G + Q+ + Sbjct: 75 GHIYLDLKD-DSSVISGVIW----KGVSARLETQPEEGMEVIATGRITTFGGQSKYQIVI 129 Query: 587 LDASPV 592 D P Sbjct: 130 EDIKPA 135 >gi|212224857|ref|YP_002308093.1| hypothetical protein TON_1706 [Thermococcus onnurineus NA1] gi|212009814|gb|ACJ17196.1| Hypothetical protein TON_1706 [Thermococcus onnurineus NA1] Length = 311 Score = 38.2 bits (87), Expect = 3.8, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 23/155 (14%) Query: 96 MIFGDYDVDGAASVALMMRFL-----SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 +I +D DG S AL++R L ++ + + + R + + K I Sbjct: 3 LIVHHWDTDGITSAALLVRALCLEDFTNMTASIGEF---RFDE-------RIRKAIEGAE 52 Query: 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLC 210 +L + + + I+ + IDHH P +NP+ + L Sbjct: 53 KLYVMDFNVPGEVEKV------NIETLFIDHHTQPRIRNPKVKQINPSLDGEYYPSASLV 106 Query: 211 AAGV--VFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 + ++ + + + + LLD Sbjct: 107 VSEYFGLWNAWSALGVVGDIGERAFEVPRVNELLD 141 >gi|254440339|ref|ZP_05053833.1| hypothetical protein OA307_5209 [Octadecabacter antarcticus 307] gi|198255785|gb|EDY80099.1| hypothetical protein OA307_5209 [Octadecabacter antarcticus 307] Length = 341 Score = 38.2 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 27/155 (17%) Query: 80 KAARRIVQAIY-NSEKIMIFG----------------DYDVDGAASVAL-MMRFLSHCSV 121 +A R+ A+ I+IF DY VDG + ++ M L+ Sbjct: 83 EALERLSNALQAKGYHILIFTAPNSSDGIESVVRDLMDYQVDGIIAASVSMSSSLAALCA 142 Query: 122 NANMYIP----DRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 A IP +R G G + +D G + + + + Sbjct: 143 KAG--IPVVLFNRGQPGSGLSAVTSANVKGGYRATQALIDAG---HSRIAHIAGWNGSLT 197 Query: 178 VIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAA 212 D Q + + L +D + + AA Sbjct: 198 GTDRQQGFEDAMANAQLTPFAIVDGMYNRDIAAAA 232 >gi|289643700|ref|ZP_06475811.1| ATPase associated with various cellular activities AAA_5 [Frankia symbiont of Datisca glomerata] gi|289506478|gb|EFD27466.1| ATPase associated with various cellular activities AAA_5 [Frankia symbiont of Datisca glomerata] Length = 400 Score = 38.2 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 D D+A + A+ E +++ G G A +L+ RF Y+ R + Sbjct: 30 DRDEAVDLLALAVLCREHVLLVGPP---GTAKSSLLERFRRTLDARCFSYLLTRFTE 83 >gi|313206499|ref|YP_004045676.1| phosphoesterase recj domain protein [Riemerella anatipestifer DSM 15868] gi|312445815|gb|ADQ82170.1| phosphoesterase RecJ domain protein [Riemerella anatipestifer DSM 15868] gi|315023560|gb|EFT36564.1| hypothetical protein RAYM_07229 [Riemerella anatipestifer RA-YM] gi|325336055|gb|ADZ12329.1| Exopolyphosphatase-related protein [Riemerella anatipestifer RA-GD] Length = 334 Score = 38.2 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 10/201 (4%) Query: 85 IVQAIYNSEKIMIFGDYDVDG-AASVAL-MMRFLSHCSVNANMYIPDRIVDGYGPNPSLM 142 I I KI+I Y+ DG A +L + FL+ +V + +P+ P Sbjct: 10 IQNLITPDNKIVIITHYNPDGDAIGSSLGLKHFLATLNVETEVIVPNDFPKFLKWMPEAK 69 Query: 143 EKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD 202 + I E + IV + L++ ++ D Sbjct: 70 KITIAEYKKKKAFELIKDADVIFCLDFNTLSRIGIVGEWVSKSPATK---ILIDHHQQPD 126 Query: 203 LSGQGH-----LCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLI 257 + + +VF + + + + + + D Sbjct: 127 AFDFVYSDTSIPATSQMVFHFIEALESTQKLNQSIAECLYTGIMTDTGGFRFRSTSATTH 186 Query: 258 GLNRAYVVKGLMVARRQGNPG 278 + + G A N Sbjct: 187 RIIAQLIEHGADPANITSNTW 207 >gi|169623839|ref|XP_001805326.1| hypothetical protein SNOG_15163 [Phaeosphaeria nodorum SN15] gi|160705055|gb|EAT77388.2| hypothetical protein SNOG_15163 [Phaeosphaeria nodorum SN15] Length = 752 Score = 38.2 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 31/344 (9%), Positives = 75/344 (21%), Gaps = 17/344 (4%) Query: 176 VIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLN 235 + + E + L + ++ + ++L+ + + Sbjct: 278 IFACSTLMMGDIEEGSKWLALATKHEESFKDVSRLSTMQAMVLLLKAREASPKRGYFWRS 337 Query: 236 FDLLSLLDLVALATVCDVVPLIGLNRAYVVKGL--MVARRQGNPGLKALIERVNISSPIT 293 + + LVA+A ++ +R G + LI I P Sbjct: 338 WMAT--VSLVAMAKDLELHDHYDTHRMGKSCGSTGHDCIAKTRVWQMCLIFEAMIGGPQG 395 Query: 294 AENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ 353 + R+ + I+ + +A + + + Sbjct: 396 RYDYSVDPETVDYDMPRLVPGQDATEFQIARQFVQYTRVAKNVYQTASLYGKLRKKSADW 455 Query: 354 AEAKVL-------TQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 A + + + +V + + S + F Sbjct: 456 ALSPAFLGHNADFSVWLREIPDDMQIVYPQDGTAPWIPSHMIANMHCYHFLSIVMHFRPQ 515 Query: 407 GKGIGSGRSIEG-FDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAH 465 + + S A L + + + + Sbjct: 516 LHAVSENYDGTWKQHMMTCYSAAKTMCKLQESILKTYGMPGLLCMLRGISFHIYAVLTCT 575 Query: 466 NIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNP 509 + IT P I G + + G P P Sbjct: 576 MLHLVAITCPDPDIHG-----DAREFFVRHMRILETCGPHFPMP 614 >gi|145591097|ref|YP_001153099.1| phosphoesterase, DHHA1 [Pyrobaculum arsenaticum DSM 13514] gi|145282865|gb|ABP50447.1| phosphoesterase, DHHA1 [Pyrobaculum arsenaticum DSM 13514] Length = 321 Score = 38.2 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 5/91 (5%) Query: 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 ++ I D DG S AL+ L + + + Sbjct: 2 GRRLTILAHGDADGVCSAALVKAALRDQYSEIQVV----FTHPVDLVKDFQQYARGDVYI 57 Query: 152 LIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 + + +D + + + G V+ IDHH Sbjct: 58 VDVAIDEKAAQ-EVQKLFRAYGGRVVYIDHH 87 >gi|256028208|ref|ZP_05442042.1| putative cytoplasmic protein [Fusobacterium sp. D11] gi|289766140|ref|ZP_06525518.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289717695|gb|EFD81707.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 358 Score = 37.8 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 21/362 (5%) Query: 82 ARRIVQAIYNSE---KIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGP 137 A + SE K++I D DG S A++++ + N I + Sbjct: 2 ADILYDTRLKSEEAPKVIILTHGDADGLVS-AMIVKAFEELQNKNKTFLIMSSMDVTLEQ 60 Query: 138 NPSLMEKFINE----GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + I +D S + L+ +VI IDHH + + Sbjct: 61 TDKTFDYICKYASFGSKDRIYILDRPIPSVEWLKMKYLAYTNVINIDHHLTNNPTMYKDE 120 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 D +L L ++ + + L L + D+ Sbjct: 121 CCC-----DDIYFYWNDKLSAAYLTLEWFKPLIEKSEVYKKMY--EKLEPLAEATSCWDI 173 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L + L N K L + N N + E Sbjct: 174 FTWKNLGNSQKELLLKRRALSINSAEKILGAGAFYNFITKKLNSENYTEEIFNYFFLLDE 233 Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 NL L + + K L + A+ + + D + + + Sbjct: 234 AYNLKIDNLFDFAKRVISDFDYKGYKLGVIYGIDGDYQSIIADKILFDKKLDYEVVAFLN 293 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG-RSIEGFDIGKMVSFAVEE 431 V G + + + +K + + G SG R + ++ K + E Sbjct: 294 VYGTVSFRSKNDIDVSDIAKK---LGMIVGYSGGGHKHASGCRICDRDEMKKKMMEIFEH 350 Query: 432 GI 433 + Sbjct: 351 SM 352 >gi|237743727|ref|ZP_04574208.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229432758|gb|EEO42970.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 358 Score = 37.8 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 21/362 (5%) Query: 82 ARRIVQAIYNSE---KIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGP 137 A + SE K++I D DG S A++++ + N I + Sbjct: 2 ADILCDTRLKSEEAPKVIILTHGDADGLVS-AMIVKAFEELQNKNKTFLIMSSMDVTLEQ 60 Query: 138 NPSLMEKFINE----GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + I +D S + L+ +VI IDHH + + Sbjct: 61 TDKTFDYICKYASFGSKDRIYILDRPIPSVEWLKMKYLAYTNVINIDHHLTNNPTMYKDE 120 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 D +L L ++ + + L L + D+ Sbjct: 121 CCC-----DDIYFYWNDKLSAAYLTLEWFKPLIEKSEVYKKMY--EKLEPLAEATSCWDI 173 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L + L N K L + N N + E Sbjct: 174 FTWKNLGNSQKELLLKRRALSINSAEKILGAGAFYNFITKKLNSENYTEEIFNYFFLLDE 233 Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 NL L + + K L + A+ + + D + + + Sbjct: 234 AYNLKIDNLFDFAKRVISDFDYKGYKLGVIYGIDGDYQSIIADKILFDKKLDYEVVAFLN 293 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG-RSIEGFDIGKMVSFAVEE 431 V G + + + +K + + G SG R + ++ K + E Sbjct: 294 VYGTVSFRSKNDIDVSDIAKK---LGMIVGYSGGGHKHASGCRICDRDEMKKKMMEIFEH 350 Query: 432 GI 433 + Sbjct: 351 SM 352 >gi|167463039|ref|ZP_02328128.1| hypothetical protein Plarl_10827 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 426 Score = 37.8 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 4/161 (2%) Query: 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI 174 +L S YIP + G + + + + + IT+D + +++ Sbjct: 59 WLRDSSAQVKHYIP---LAGQDKELQQIIEGLIKRQMMYITMDPYANAFNETSNDKRWET 115 Query: 175 DVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL 234 D+ I + V + +L P L L + F + ILR Sbjct: 116 DLTEI-NPWVWERKYELDSLCYPIELSYLYWKQTGRTGMFDFTYQSALRAILRLIGTEQR 174 Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 + + D + G G+ + + Sbjct: 175 HGEKSDYRFERTTGLKTDTLRNQGKGMPVNYTGMTWSGFRP 215 >gi|322381410|ref|ZP_08055409.1| hypothetical protein PL1_2255 [Paenibacillus larvae subsp. larvae B-3650] gi|321154637|gb|EFX46912.1| hypothetical protein PL1_2255 [Paenibacillus larvae subsp. larvae B-3650] Length = 444 Score = 37.8 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 4/161 (2%) Query: 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGI 174 +L S YIP + G + + + + + IT+D + +++ Sbjct: 77 WLRDSSAQVKHYIP---LAGQDKELQQIIEGLIKRQMMYITMDPYANAFNETSNDKRWET 133 Query: 175 DVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPL 234 D+ I + V + +L P L L + F + ILR Sbjct: 134 DLTEI-NPWVWERKYELDSLCYPIELSYLYWKQTGRTGMFDFTYQSALRAILRLIGTEQR 192 Query: 235 NFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQG 275 + + D + G G+ + + Sbjct: 193 HGEKSDYRFERTTGLKTDTLRNQGKGMPVNYTGMTWSGFRP 233 >gi|225906902|gb|ACO36239.1| (+)-valencene synthase [Vitis vinifera] Length = 556 Score = 37.8 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 50/459 (10%), Positives = 112/459 (24%), Gaps = 41/459 (8%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKI-----MIFGDY----DVDG----AASVALMMRFLS 117 +P L + A +R+ A + ++I I + D+DG AL R L Sbjct: 69 NPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCNDMDGDLYNI---ALGFRLLR 125 Query: 118 HCSVNANMYIPDRIVDG------------YGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 + I ++ D G + + I+ T+ Sbjct: 126 QQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRVHGEDILAKALAFTTTHL 185 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF--LVLVLIY 223 + G + H + + + ++ + + Sbjct: 186 KAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQDEAFHDKTLLELAKLDFNLV 245 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + L ++ L LD + G + V R K + Sbjct: 246 QSLHKEELSNLARWWKE-LDFATKLPFARDRLVEGYFWMHGVYFEPQYLRGRRILTKVIA 304 Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL---- 339 + A + I A R +++ + K Sbjct: 305 MTSILDDIHDAYGTPEELKLFIEAIERWDINSINQLPEYMKLCYVALLDVYKEIEEEMEK 364 Query: 340 --NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 NQ R +++ + + + V E F Sbjct: 365 EGNQYRVHYAKEVMKNQVRAYFAEAKWLHEEHVPAFEEYMRVALASSGYCLLATTSFVGM 424 Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + E + + + + ++ + GH +A+ + +G Sbjct: 425 GEIATKEAFDWVTSDPKIMSSSNFITRLMDDIKSHKFEQKRGH-VASAVECYMKQYGVSE 483 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 + + + L +AV++ L+ L Sbjct: 484 EQVYSEFQKQIENAWLDINQEC---LKPTAVSMPLLARL 519 >gi|154248963|ref|YP_001409788.1| phosphoesterase domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154152899|gb|ABS60131.1| phosphoesterase RecJ domain protein [Fervidobacterium nodosum Rt17-B1] Length = 332 Score = 37.8 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%) Query: 85 IVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNA----NMYIPDRIVDGYGPN 138 IV + ++KI++ G D D +SV L + IP + N Sbjct: 8 IVAELNKAKKILVVGHIMPDGDDVSSVLSATLGLRKIGKEVLAGIDWRIPWYFQEFEEVN 67 Query: 139 PSLMEKF---INEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 L + N +++ +D S V+V+DHH + + Sbjct: 68 EILSYEKIMEANFNPDIVLILDASSPDRVGRFQEFFDNRTVLVVDHHGTNTLFGTYNWV 126 >gi|260495596|ref|ZP_05815721.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260196938|gb|EEW94460.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 358 Score = 37.8 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 21/362 (5%) Query: 82 ARRIVQAIYNSE---KIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGP 137 A + SE K++I D DG S A++++ + N I + Sbjct: 2 ADILCDTRLKSEEAPKVIILTHGDADGLVS-AMIVKAFEELQNKNKTFLIMSSMDVTLEQ 60 Query: 138 NPSLMEKFINE----GAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 + I +D S + L+ +VI IDHH + + Sbjct: 61 TNKTFDYICKYASFGSKDRIYILDRPIPSVEWLKMKYLAYTNVINIDHHLTNNPTMYKDE 120 Query: 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 D +L L ++ + + L L + D+ Sbjct: 121 CCC-----DDIYFYWNDKLSAAYLTLEWFKPLIEKSEVYKKMY--EKLEPLAEATSCWDI 173 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGE 313 L + L N K L + N N + E Sbjct: 174 FTWKNLGNSQKELLLKRRALSINSAEKILGAGAFYNFITKKLNSENYTEEIFNYFFLLDE 233 Query: 314 -SNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV 372 NL L + + K L + A+ + + D + + + Sbjct: 234 AYNLKIDNLFDFAKRVISDFDYKGYKLGVIYGIDGDYQSIIADKILFDKKLDYEVVAFLN 293 Query: 373 VEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG-RSIEGFDIGKMVSFAVEE 431 V G + + + +K + + G SG R + ++ K + E Sbjct: 294 VYGTVSFRSKNDIDVSDIAKK---LGMIVGYSGGGHKHASGCRICDRDEMKKKMMEIFEH 350 Query: 432 GI 433 + Sbjct: 351 SM 352 >gi|218295540|ref|ZP_03496353.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus Y51MC23] gi|218244172|gb|EED10698.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus Y51MC23] Length = 1030 Score = 37.8 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%) Query: 27 INRALAITQKHAIPDIVAR---VLVNRNV----SIDYAKDFLNPSIRLLMPDPLILTD-- 77 AL + ++ ++AR VL R + S + K +L L P IL D Sbjct: 693 PEEALELAKEVGF-PLLARPSYVLGGRAMRVLKSQEELKRYLEEVYGPLQEKPSILLDRY 751 Query: 78 CDKAARRIVQAIYNSEKIMIFG 99 + A V A+ + E++MI G Sbjct: 752 LEGALELDVDALSDGEEVMIAG 773 >gi|116492784|ref|YP_804519.1| single-stranded DNA-binding protein [Pediococcus pentosaceus ATCC 25745] gi|116102934|gb|ABJ68077.1| Single-stranded DNA-binding protein [Pediococcus pentosaceus ATCC 25745] Length = 132 Score = 37.4 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 545 AFRVYGTPLGEFLMQS---RGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 FR ++ +G + VTG L +N + G + Q+ V D Sbjct: 47 WFRCSVWGTRAITVEKFYKKGSHVVVTGSLSINEYNGKTQLQIDVSDF 94 >gi|299141106|ref|ZP_07034244.1| DHH subfamily 1 protein [Prevotella oris C735] gi|298578072|gb|EFI49940.1| DHH subfamily 1 protein [Prevotella oris C735] Length = 345 Score = 37.4 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 59/221 (26%), Gaps = 9/221 (4%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVD-----G 134 + I ++E I++ G DG A L +L +A + +PD D Sbjct: 11 VETLKATIRDAENIIVVGHKSPDGDALGACLAWTEYLRQWGKSAQIIVPDAFPDFLKWLP 70 Query: 135 YGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYAL 194 +K E L D T +++ K I + Sbjct: 71 GSEQVMRYDKHPEEVKALCQQAD--LLFCLDFNEMTRLEELQEIVEASPAKRVLIDHHLN 128 Query: 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVV 254 + +S +VF V+ + + K+ + D Sbjct: 129 PAIEGVVTVSHPEASSTCELVFRVICQLGDFDHLNQKIAAPIYCGMMTDTGGFTYNSTRP 188 Query: 255 PLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 + + + G+ + N + + +E Sbjct: 189 EIYTIIGMLLTTGIDKDKIYRNVFNNYSQWAIRFRGYLMSE 229 >gi|189183297|ref|YP_001937082.1| pyruvate phosphate dikinase [Orientia tsutsugamushi str. Ikeda] gi|189180068|dbj|BAG39848.1| phosphate dikinase precursor [Orientia tsutsugamushi str. Ikeda] Length = 901 Score = 37.4 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 16/89 (17%) Query: 29 RALAITQK-----HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM--PDPLILTDCDKA 81 +A + Q+ D+ +S D + F+N I + DP DC+ Sbjct: 779 QAYELAQEVDFFCFGTNDLTQTTY---GISRDDSTSFINQYIENDIFTADPFTTLDCEAV 835 Query: 82 ARRIVQAIYNSE------KIMIFGDYDVD 104 I AI KI I G++ D Sbjct: 836 GELIQIAIERGRTAKKHLKIGICGEHAAD 864 >gi|45478055|gb|AAS66358.1| (+)-valencene synthase [Vitis vinifera] Length = 556 Score = 37.4 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 49/459 (10%), Positives = 110/459 (23%), Gaps = 41/459 (8%) Query: 71 DPLILTDCDKAARRIVQAIYNSEKI-----MIFGDY----DVDG----AASVALMMRFLS 117 +P L + A +R+ A + ++I I + D+DG AL R L Sbjct: 69 NPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCNDMDGDLYNI---ALGFRLLR 125 Query: 118 HCSVNANMYIPDRIVDG------------YGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 + I ++ D G + + I+ T+ Sbjct: 126 QQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRVHGEDILAKALAFTTTHL 185 Query: 166 LQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVF--LVLVLIY 223 + G + H + + + ++ + + Sbjct: 186 KAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQDEAFHDKTLLELAKLDFNLV 245 Query: 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALI 283 + L ++ L LD + G + V R K + Sbjct: 246 QSLHKEELSNLARWWKE-LDFATKLPFARDRLVEGYFWMHGVYFEPQYLRGRRILTKVIA 304 Query: 284 ERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVL---- 339 + A + I A R +++ + K Sbjct: 305 MTSILDDIHDAYGTPEELKLFIEAIERWDINSINQLPEYMKLCYVALLDVYKEIEEEMEK 364 Query: 340 --NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRP 397 NQ R +++ + + + V E F Sbjct: 365 EGNQYRVHYAKEVMKNQVRAYFAEAKWLHEEHVPAFEEYMRVALASSGYCLLATTSFVGM 424 Query: 398 SFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLC 457 + E + + + + ++ + GH + + +G Sbjct: 425 GEIATKEAFDWVTSDPKIMSSSNFITRLMDDIKSHKFEQKRGHVTS-AVECYMKQYGVSE 483 Query: 458 DFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDML 496 + + + L +AV++ L+ L Sbjct: 484 EQVYSEFQKQIENAWLDINQEC---LKPTAVSMPLLARL 519 >gi|121583810|ref|NP_001073490.1| neurexin 1a [Danio rerio] gi|109137012|gb|ABG25161.1| neurexin 1a alpha [Danio rerio] Length = 1491 Score = 37.4 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 21/77 (27%) Query: 531 MTFESQDSET-----LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW-------RG 578 + E L I + E + + L N W RG Sbjct: 756 LRLELDGGRVRLTVNLDCIRINCTTSKGPETIFSGQN--------LNDNEWHTVRVVRRG 807 Query: 579 SKRCQLRVLDASPVEGH 595 K +L V D P EG Sbjct: 808 -KSLKLMVDDLQPSEGQ 823 >gi|145551642|ref|XP_001461498.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429332|emb|CAK94125.1| unnamed protein product [Paramecium tetraurelia] Length = 609 Score = 37.4 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 19/91 (20%) Query: 512 AFPNHKLQSIRVVNLAHL---QMTFESQDSETL------QAIAFRVYGTPLGEFLMQSRG 562 + K +V+ AH+ + S D + L ++I F Y G++L Sbjct: 472 YLRDVKSGKFKVIKDAHINYRRSIILSPDGKILGSDNGDKSIHF--YDVKTGQYLESFDN 529 Query: 563 KRMHVTGHLCVNYWRGSK--------RCQLR 585 + + G N + + QL Sbjct: 530 RYNDILGQFQTNIFNNNPHRNATSNITLQLI 560 >gi|73948652|ref|XP_849522.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis familiaris] Length = 327 Score = 37.4 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 56/207 (27%), Gaps = 29/207 (14%) Query: 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149 + I + + DG + L++ L + + YI + Sbjct: 139 EKRKPIRVLSLF--DGI-ATGLLV--LKDLGIQVDCYIASEVCKDS-------------- 179 Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHL 209 ITV D + +D + +++NP + Sbjct: 180 ----ITVGKIMYVGDVCSVTQKHIQEWGPLD-LVIGGSPCNGLSIINPAHKG-----LYE 229 Query: 210 CAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 + F L++ ++ F L + + ++ D+ ++ N + + Sbjct: 230 GTGRLFFEFYHLLHYARPKEGDDRPFFWLFENVVAMGISDKRDISRILKSNPMMINAKEV 289 Query: 270 VARRQGNPGLKALIERVNISSPITAEN 296 A + + L T + Sbjct: 290 SAAHRAHYFWGNLPGMNRRPLASTVND 316 >gi|145510748|ref|XP_001441306.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408547|emb|CAK73909.1| unnamed protein product [Paramecium tetraurelia] Length = 3013 Score = 37.4 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 35/384 (9%), Positives = 81/384 (21%), Gaps = 37/384 (9%) Query: 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDD-- 202 F +D + ++ I + +S VN N Sbjct: 1380 FRYFLMNSCPCLDGFYDVGIEMCQKCSEFCKTCSISSTKCQSCFPNHLRAVNQNNCTCIP 1439 Query: 203 ------------LSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS-LLDLVALAT 249 S C + + + + + L LD + Sbjct: 1440 GYFDSGSLICEKCSNSCQTCKNQKDYCTSCDVNQNRLDQSIIHKCPCLSDFYLDSNEICQ 1499 Query: 250 VCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGG 309 C V +N +G + + + + + Sbjct: 1500 KCHVKCSGCVNERNNCQGCKYLQGSNRLTISNQCNCKDGYYDDDFQIICNKCDNRCKTCQ 1559 Query: 310 RIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQ--------------AE 355 + ++ L + + + + + Q E Sbjct: 1560 KGAKNCLSCFSNVRINPPDCPCMKGYFETSQQVCEACEFQCDTCETMPSNCLTCKEGRIN 1619 Query: 356 AKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRS 415 + + ++ ++ D L K R +DG S Sbjct: 1620 KLCDCEDGYFEGGQILCIQCDFQCQKCKKSSTNCLACKGDRLQIPFCRCQDGYY-DDFYS 1678 Query: 416 IEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE-------RVNFGRLCDFFQKFAHNIV 468 +G L G ++ +T + + + + Sbjct: 1679 FNCLKCDYTCKTCSSQGCLKCNGNRILSDQMTCDPPPNSISWLLTPWCSNCEVAVMKIKL 1738 Query: 469 PALITTPVFKIDGVLNASAVNIAL 492 + T + D LN + + L Sbjct: 1739 SDDLATIIVLFDFPLNQNFFSTQL 1762 >gi|227833352|ref|YP_002835059.1| putative exopolyphosphatase family protein [Corynebacterium aurimucosum ATCC 700975] gi|262184338|ref|ZP_06043759.1| putative exopolyphosphatase family protein [Corynebacterium aurimucosum ATCC 700975] gi|227454368|gb|ACP33121.1| putative exopolyphosphatase family protein [Corynebacterium aurimucosum ATCC 700975] Length = 320 Score = 37.0 bits (84), Expect = 8.0, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 12/137 (8%) Query: 76 TDCDKAARRIVQAIYNSEKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 T+ + A +VQA I I D D S A + L I R Sbjct: 4 TNYEAAVDALVQA----SSICIITHLRPDADAVGSAAALTLALRQRGKQTRTVIGQRRDI 59 Query: 134 GYG------PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 + + + +G L +TVDCGS + + + Sbjct: 60 SANLFSIPTVDEIELVDELPQGYDLYVTVDCGSIDRTGSVAREIEEMAAVGRVLCIDHHA 119 Query: 188 EIPAYALVNPNRLDDLS 204 + +N S Sbjct: 120 SNDGFGAINVVDPVCES 136 >gi|148284437|ref|YP_001248527.1| pyruvate phosphate dikinase [Orientia tsutsugamushi str. Boryong] gi|146739876|emb|CAM79833.1| pyruvate, phosphate dikinase [Orientia tsutsugamushi str. Boryong] Length = 901 Score = 37.0 bits (84), Expect = 8.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 16/89 (17%) Query: 29 RALAITQK-----HAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLM--PDPLILTDCDKA 81 +A + Q+ D+ +S D + F+N I + DP DC+ Sbjct: 779 QAYELAQEVDFFCFGTNDLTQTTY---GISRDDSTSFINQYIENDIFAADPFATLDCEAV 835 Query: 82 ARRIVQAIYNSE------KIMIFGDYDVD 104 I AI KI I G++ D Sbjct: 836 GELIQIAIERGRTAKKHLKIGICGEHAAD 864 >gi|312075954|ref|XP_003140645.1| hypothetical protein LOAG_05060 [Loa loa] gi|307764193|gb|EFO23427.1| hypothetical protein LOAG_05060 [Loa loa] Length = 666 Score = 37.0 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMY----IPDRIVDGYGPNPSLMEKFINEG 149 ++I D+D D S ++M + N MY +P R G + Sbjct: 246 NVIIVSDHDADSITS-SIMTKLQCQHGNNYLMYGKDTVPIRFHYGGSSRIGDIIISARPE 304 Query: 150 AQLIITVDCGSTSYDALQYATNQGIDVI 177 + +T + + + + ID + Sbjct: 305 TSIFLTAEQNESYTRLGDHGYDNRIDSM 332 >gi|281424097|ref|ZP_06255010.1| DHH subfamily 1 protein [Prevotella oris F0302] gi|281401754|gb|EFB32585.1| DHH subfamily 1 protein [Prevotella oris F0302] Length = 345 Score = 37.0 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 11/222 (4%) Query: 82 ARRIVQAIYNSEKIMIFGDYDVDG-AASVALMM-RFLSHCSVNANMYIPDRIVDGYGPNP 139 + I ++E I++ G DG A L +L +A + +PD D P Sbjct: 11 VETLKATIRDAENIIVVGHKSPDGDALGACLAWTEYLRQWGKSAQIIVPDAFPDFLKWLP 70 Query: 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNR 199 + + + V C L + + + + ++ L++ + Sbjct: 71 GSEQVMRYDKHPEEVEVLC---QQADLLFCLDFNEMTRLEELQEIVEVSPAKRVLIDHHL 127 Query: 200 LD------DLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 +S +VF V+ + + K+ + D Sbjct: 128 NPAIEGVVTVSHPEASSTCELVFRVICQLGGFEHLNQKIAAPIYCGMMTDTGGFTYNSTR 187 Query: 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAE 295 + + + G+ + N + + +E Sbjct: 188 PEIYTIIGMLLTTGIDKDKIYRNVFNNYSQWAIRFRGYLMSE 229 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.127 0.346 Lambda K H 0.267 0.0389 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,501,096,219 Number of Sequences: 14124377 Number of extensions: 267333341 Number of successful extensions: 647849 Number of sequences better than 10.0: 2676 Number of HSP's better than 10.0 without gapping: 2460 Number of HSP's successfully gapped in prelim test: 216 Number of HSP's that attempted gapping in prelim test: 632412 Number of HSP's gapped (non-prelim): 2841 length of query: 600 length of database: 4,842,793,630 effective HSP length: 145 effective length of query: 455 effective length of database: 2,794,758,965 effective search space: 1271615329075 effective search space used: 1271615329075 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 84 (37.0 bits)